Query 013837
Match_columns 435
No_of_seqs 347 out of 3980
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 18:02:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013837.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013837hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yh0_A Splicing factor U2AF 65 100.0 2.9E-34 9.8E-39 253.2 25.6 194 173-376 3-196 (198)
2 2g4b_A Splicing factor U2AF 65 100.0 4.8E-34 1.6E-38 246.0 22.6 171 172-372 2-172 (172)
3 4f02_A Polyadenylate-binding p 100.0 5.4E-34 1.9E-38 254.2 15.2 167 172-373 13-180 (213)
4 3md3_A Nuclear and cytoplasmic 100.0 5.5E-33 1.9E-37 237.7 19.5 164 175-372 1-165 (166)
5 1l3k_A Heterogeneous nuclear r 100.0 1.3E-33 4.4E-38 248.6 15.0 177 170-376 9-185 (196)
6 1fje_B Nucleolin RBD12, protei 100.0 7.9E-33 2.7E-37 239.1 19.2 166 170-374 9-174 (175)
7 1b7f_A Protein (SXL-lethal pro 100.0 8.2E-33 2.8E-37 237.2 16.0 164 173-371 2-168 (168)
8 2qfj_A FBP-interacting repress 100.0 2.1E-33 7.3E-38 251.2 11.8 184 168-375 22-206 (216)
9 1fxl_A Paraneoplastic encephal 100.0 1.5E-31 5.1E-36 229.0 20.0 160 174-371 2-167 (167)
10 2cjk_A Nuclear polyadenylated 100.0 3.6E-33 1.2E-37 239.2 8.8 165 173-374 2-166 (167)
11 3nmr_A Cugbp ELAV-like family 100.0 7.6E-31 2.6E-35 226.5 16.6 165 173-372 2-175 (175)
12 3tyt_A Heterogeneous nuclear r 100.0 1.4E-30 4.9E-35 229.6 18.2 185 173-371 3-204 (205)
13 3pgw_A U1-A; protein-RNA compl 100.0 5.9E-30 2E-34 238.4 21.4 189 170-372 5-281 (282)
14 2adc_A Polypyrimidine tract-bi 100.0 1.2E-29 4.2E-34 228.6 21.5 187 171-374 31-228 (229)
15 3sde_A Paraspeckle component 1 100.0 8.9E-30 3E-34 234.1 18.3 156 171-374 19-179 (261)
16 3smz_A Protein raver-1, ribonu 100.0 1.7E-29 5.8E-34 235.5 20.4 158 170-375 18-176 (284)
17 2ghp_A U4/U6 snRNA-associated 100.0 6.6E-30 2.3E-34 239.3 16.9 172 173-374 116-291 (292)
18 3smz_A Protein raver-1, ribonu 100.0 3.1E-30 1.1E-34 240.5 14.3 172 172-376 93-266 (284)
19 1qm9_A Polypyrimidine tract-bi 100.0 1.8E-29 6.2E-34 222.4 15.2 183 174-374 3-197 (198)
20 2ghp_A U4/U6 snRNA-associated 100.0 3.9E-29 1.3E-33 234.0 17.4 157 170-375 37-198 (292)
21 2kn4_A Immunoglobulin G-bindin 99.9 1.5E-23 5E-28 177.5 14.7 142 219-376 10-152 (158)
22 4fxv_A ELAV-like protein 1; RN 99.9 6.2E-22 2.1E-26 153.0 12.5 81 293-373 18-98 (99)
23 2i2y_A Fusion protein consists 99.9 2.6E-22 8.9E-27 168.2 11.1 136 220-374 11-148 (150)
24 2lxi_A RNA-binding protein 10; 99.8 1.3E-21 4.5E-26 148.7 7.6 82 295-376 2-85 (91)
25 3s8s_A Histone-lysine N-methyl 99.8 1.2E-20 4.2E-25 148.5 12.6 83 292-374 4-86 (110)
26 2lkz_A RNA-binding protein 5; 99.8 8.7E-21 3E-25 144.8 8.4 82 292-373 7-94 (95)
27 3bs9_A Nucleolysin TIA-1 isofo 99.8 5.9E-20 2E-24 138.7 11.7 82 293-374 5-86 (87)
28 3md1_A Nuclear and cytoplasmic 99.8 8.9E-20 3.1E-24 136.4 12.1 81 295-375 2-82 (83)
29 2lea_A Serine/arginine-rich sp 99.8 9.6E-21 3.3E-25 155.1 6.9 124 223-376 5-129 (135)
30 2dgo_A Cytotoxic granule-assoc 99.8 1.9E-19 6.4E-24 143.5 14.0 88 290-377 11-98 (115)
31 2cqc_A Arginine/serine-rich sp 99.8 1.3E-19 4.6E-24 139.2 12.5 84 290-373 11-94 (95)
32 2cq0_A Eukaryotic translation 99.8 1.1E-19 3.7E-24 141.9 11.8 87 290-376 11-97 (103)
33 1whw_A Hypothetical protein ri 99.8 1.3E-19 4.4E-24 140.4 12.0 85 292-376 6-90 (99)
34 2x1f_A MRNA 3'-END-processing 99.8 1.1E-19 3.8E-24 139.8 11.6 82 294-375 2-83 (96)
35 1x5s_A Cold-inducible RNA-bind 99.8 1E-19 3.6E-24 141.7 11.3 87 290-376 8-94 (102)
36 2cqb_A Peptidyl-prolyl CIS-tra 99.8 8.5E-20 2.9E-24 142.2 10.8 86 291-376 9-94 (102)
37 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1.1E-19 3.8E-24 136.5 11.0 81 292-372 5-85 (85)
38 2dnz_A Probable RNA-binding pr 99.8 1.3E-19 4.5E-24 139.2 11.6 85 292-376 3-87 (95)
39 2dnm_A SRP46 splicing factor; 99.8 9.2E-20 3.2E-24 142.3 10.5 86 291-376 10-95 (103)
40 2e5h_A Zinc finger CCHC-type a 99.8 1.3E-19 4.6E-24 138.8 11.2 82 291-372 13-94 (94)
41 1x5u_A Splicing factor 3B subu 99.8 1.6E-19 5.3E-24 141.5 11.8 88 289-376 10-97 (105)
42 2cpz_A CUG triplet repeat RNA- 99.8 2E-19 7E-24 143.3 12.5 86 291-376 22-107 (115)
43 2dgs_A DAZ-associated protein 99.8 1.8E-19 6.1E-24 139.5 11.8 85 291-376 7-91 (99)
44 4f25_A Polyadenylate-binding p 99.8 1.6E-19 5.6E-24 143.6 11.8 81 293-375 4-84 (115)
45 2div_A TRNA selenocysteine ass 99.8 1.5E-19 5E-24 140.1 11.2 85 291-375 6-95 (99)
46 1x5t_A Splicing factor 3B subu 99.8 1.2E-19 3.9E-24 139.8 10.5 85 292-376 3-88 (96)
47 3p5t_L Cleavage and polyadenyl 99.8 2.8E-20 9.5E-25 141.3 6.8 81 295-375 2-84 (90)
48 2do4_A Squamous cell carcinoma 99.8 3.5E-19 1.2E-23 138.1 13.0 84 291-375 14-97 (100)
49 1rk8_A CG8781-PA, CG8781-PA pr 99.8 1.9E-19 6.5E-24 153.1 12.3 141 227-376 11-154 (165)
50 2dgp_A Bruno-like 4, RNA bindi 99.8 1.9E-19 6.6E-24 141.3 11.2 87 290-376 9-98 (106)
51 2cpf_A RNA binding motif prote 99.8 2.1E-19 7.3E-24 138.8 11.3 85 292-376 3-90 (98)
52 1x4h_A RNA-binding protein 28; 99.8 3.3E-19 1.1E-23 141.1 12.6 88 290-377 11-104 (111)
53 1p27_B RNA-binding protein 8A; 99.8 2.5E-19 8.4E-24 140.6 11.3 84 292-375 21-104 (106)
54 2la6_A RNA-binding protein FUS 99.8 3.2E-19 1.1E-23 138.1 11.8 82 291-372 10-99 (99)
55 2jrs_A RNA-binding protein 39; 99.8 2.5E-19 8.5E-24 140.8 11.1 84 291-374 23-106 (108)
56 2cph_A RNA binding motif prote 99.8 4.1E-19 1.4E-23 139.7 12.0 86 291-376 12-99 (107)
57 2dng_A Eukaryotic translation 99.8 5.2E-19 1.8E-23 137.9 12.2 84 291-376 12-95 (103)
58 3ns6_A Eukaryotic translation 99.8 6E-20 2E-24 142.3 6.7 80 294-373 6-92 (100)
59 2fy1_A RNA-binding motif prote 99.8 3.8E-19 1.3E-23 141.6 11.3 83 292-375 5-87 (116)
60 2ywk_A Putative RNA-binding pr 99.8 4.6E-19 1.6E-23 136.1 11.3 82 291-373 13-94 (95)
61 2d9p_A Polyadenylate-binding p 99.8 5E-19 1.7E-23 138.1 11.6 85 290-376 11-95 (103)
62 1oo0_B CG8781-PA, drosophila Y 99.8 4.1E-19 1.4E-23 140.3 11.2 84 292-375 24-107 (110)
63 2dnh_A Bruno-like 5, RNA bindi 99.8 8.4E-19 2.9E-23 137.3 12.8 84 292-376 13-99 (105)
64 1sjq_A Polypyrimidine tract-bi 99.8 2.7E-19 9.3E-24 137.7 9.6 82 291-378 13-96 (105)
65 2kxn_B Transformer-2 protein h 99.8 2.3E-19 7.9E-24 145.6 9.7 87 289-375 41-127 (129)
66 2cqi_A Nucleolysin TIAR; RNA r 99.8 1.4E-18 4.8E-23 135.5 13.9 86 290-377 11-96 (103)
67 3ulh_A THO complex subunit 4; 99.8 7.8E-19 2.7E-23 138.0 12.3 81 291-372 26-106 (107)
68 3r27_A HnRNP L, heterogeneous 99.8 4.6E-19 1.6E-23 135.0 10.5 79 291-375 18-98 (100)
69 2dhg_A TRNA selenocysteine ass 99.8 4.2E-19 1.5E-23 138.8 10.6 85 291-376 6-92 (104)
70 2cpe_A RNA-binding protein EWS 99.8 5.4E-19 1.9E-23 140.4 11.3 87 290-376 11-105 (113)
71 2dgx_A KIAA0430 protein; RRM d 99.8 8.2E-19 2.8E-23 134.8 11.9 81 292-375 7-91 (96)
72 2dh8_A DAZ-associated protein 99.8 4.9E-19 1.7E-23 138.7 10.8 87 290-377 12-98 (105)
73 3s7r_A Heterogeneous nuclear r 99.8 1.1E-18 3.7E-23 131.7 12.0 80 291-371 8-87 (87)
74 2wbr_A GW182, gawky, LD47780P; 99.8 6.7E-19 2.3E-23 129.0 10.4 73 293-371 6-78 (89)
75 1wi8_A EIF-4B, eukaryotic tran 99.8 5.7E-19 2E-23 138.0 10.7 83 292-376 13-96 (104)
76 2cqp_A RNA-binding protein 12; 99.8 3.9E-19 1.3E-23 137.4 9.6 84 291-374 12-95 (98)
77 4a8x_A RNA-binding protein wit 99.8 5.9E-19 2E-23 133.5 10.4 83 293-375 3-86 (88)
78 3ucg_A Polyadenylate-binding p 99.8 8.5E-19 2.9E-23 132.9 11.2 80 294-374 6-85 (89)
79 3pgw_S U1-70K; protein-RNA com 99.8 9.6E-20 3.3E-24 178.0 7.5 84 292-375 100-183 (437)
80 2cq3_A RNA-binding protein 9; 99.8 1.8E-18 6.2E-23 134.9 13.4 87 289-377 10-96 (103)
81 3n9u_C Cleavage and polyadenyl 99.8 5.4E-19 1.9E-23 148.1 11.1 81 293-373 54-136 (156)
82 1u6f_A Tcubp1, RNA-binding pro 99.8 1.3E-18 4.6E-23 143.5 13.3 87 290-376 38-124 (139)
83 2cqd_A RNA-binding region cont 99.8 1.1E-18 3.9E-23 139.2 12.3 85 290-375 13-97 (116)
84 2do0_A HnRNP M, heterogeneous 99.8 2.1E-18 7.1E-23 137.2 13.7 85 290-375 11-95 (114)
85 2ek1_A RNA-binding protein 12; 99.8 2.2E-19 7.6E-24 137.9 7.7 83 291-373 12-94 (95)
86 2khc_A Testis-specific RNP-typ 99.8 5.3E-19 1.8E-23 141.6 9.9 84 289-372 35-118 (118)
87 4f25_A Polyadenylate-binding p 99.8 1.6E-19 5.5E-24 143.7 6.8 108 174-310 5-113 (115)
88 3ex7_B RNA-binding protein 8A; 99.8 6E-19 2E-23 143.0 10.2 86 292-377 20-105 (126)
89 2rs2_A Musashi-1, RNA-binding 99.8 7.3E-19 2.5E-23 138.4 10.4 87 291-378 22-108 (109)
90 2cqg_A TDP-43, TAR DNA-binding 99.8 2.9E-18 1E-22 133.7 13.7 86 290-377 11-96 (103)
91 2dgv_A HnRNP M, heterogeneous 99.8 1.5E-18 5.2E-23 132.3 11.6 83 292-376 6-88 (92)
92 1p1t_A Cleavage stimulation fa 99.8 6.5E-19 2.2E-23 137.7 9.5 81 294-374 8-88 (104)
93 1h2v_Z 20 kDa nuclear CAP bind 99.8 2.9E-18 1E-22 144.4 13.5 85 292-376 37-121 (156)
94 2dgw_A Probable RNA-binding pr 99.8 3.2E-18 1.1E-22 130.2 12.5 81 292-375 8-88 (91)
95 2cq1_A PTB-like protein L; RRM 99.8 2.3E-18 8E-23 132.7 11.6 82 290-377 11-94 (101)
96 1s79_A Lupus LA protein; RRM, 99.8 6.8E-19 2.3E-23 136.6 8.6 78 293-372 10-87 (103)
97 2mss_A Protein (musashi1); RNA 99.8 4.4E-19 1.5E-23 129.8 6.8 75 296-371 1-75 (75)
98 2kt5_A RNA and export factor-b 99.8 5.5E-18 1.9E-22 136.8 13.8 86 290-376 31-116 (124)
99 2cpi_A CCR4-NOT transcription 99.8 1.3E-18 4.3E-23 137.6 9.7 85 291-375 12-102 (111)
100 1x4d_A Matrin 3; structural ge 99.8 1E-18 3.4E-23 134.6 8.3 79 291-375 12-93 (102)
101 2cq4_A RNA binding motif prote 99.8 1.2E-18 4E-23 138.6 9.0 79 294-373 25-103 (114)
102 1wex_A Hypothetical protein (r 99.8 2.6E-18 9E-23 133.3 10.5 80 291-376 12-93 (104)
103 2ad9_A Polypyrimidine tract-bi 99.8 2.4E-18 8.2E-23 135.9 10.4 81 291-377 28-110 (119)
104 2m2b_A RNA-binding protein 10; 99.8 4.7E-19 1.6E-23 144.5 6.5 84 291-375 20-109 (131)
105 1x4a_A Splicing factor, argini 99.8 5.9E-18 2E-22 133.4 12.5 83 291-376 19-101 (109)
106 1x4e_A RNA binding motif, sing 99.8 2.8E-19 9.7E-24 134.3 4.7 81 292-372 3-83 (85)
107 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 3.6E-18 1.2E-22 141.1 11.5 83 289-371 58-140 (140)
108 2err_A Ataxin-2-binding protei 99.8 2.4E-18 8.2E-23 135.5 9.9 83 290-374 25-107 (109)
109 2ki2_A SS-DNA binding protein 99.8 3.8E-19 1.3E-23 135.1 4.9 80 295-375 2-81 (90)
110 1wez_A HnRNP H', FTP-3, hetero 99.8 1.7E-18 5.7E-23 134.4 8.4 83 290-375 11-93 (102)
111 2dis_A Unnamed protein product 99.8 2.7E-18 9.4E-23 135.3 9.7 83 293-375 7-93 (109)
112 1x4b_A Heterogeneous nuclear r 99.8 3.1E-18 1.1E-22 136.6 10.1 83 293-376 26-108 (116)
113 2nlw_A Eukaryotic translation 99.8 3.7E-18 1.3E-22 133.5 10.0 81 292-374 13-100 (105)
114 2j76_E EIF-4B, EIF4B, eukaryot 99.8 6.7E-19 2.3E-23 136.4 5.6 82 291-374 16-98 (100)
115 1uaw_A Mouse-musashi-1; RNP-ty 99.8 9.7E-19 3.3E-23 128.7 6.2 76 295-371 1-76 (77)
116 2jwn_A Embryonic polyadenylate 99.8 4.8E-18 1.6E-22 137.2 10.8 81 294-375 36-116 (124)
117 2a3j_A U1 small nuclear ribonu 99.8 4.5E-18 1.6E-22 136.9 10.6 81 292-375 27-111 (127)
118 2cpy_A RNA-binding protein 12; 99.7 1.9E-18 6.5E-23 137.3 8.1 80 291-372 12-92 (114)
119 1wg5_A Heterogeneous nuclear r 99.7 3.6E-18 1.2E-22 133.3 9.5 83 292-376 13-96 (104)
120 2db1_A Heterogeneous nuclear r 99.7 4.2E-18 1.4E-22 136.0 9.7 79 292-372 15-96 (118)
121 1x5o_A RNA binding motif, sing 99.7 7.3E-18 2.5E-22 134.0 11.1 82 292-374 23-112 (114)
122 1x4c_A Splicing factor, argini 99.7 1.5E-17 5E-22 130.8 12.2 77 292-375 13-94 (108)
123 2fc9_A NCL protein; structure 99.7 7.7E-18 2.6E-22 130.8 10.4 82 290-375 11-92 (101)
124 2dgu_A Heterogeneous nuclear r 99.7 2E-17 6.7E-22 128.9 12.0 79 291-377 8-86 (103)
125 2dnq_A RNA-binding protein 4B; 99.7 1.5E-17 5.3E-22 126.1 11.0 77 292-376 6-82 (90)
126 2fc8_A NCL protein; structure 99.7 1.3E-17 4.4E-22 129.8 10.8 82 291-375 12-93 (102)
127 2j8a_A Histone-lysine N-methyl 99.7 1.5E-17 5E-22 130.1 10.8 81 295-375 3-97 (136)
128 2ytc_A PRE-mRNA-splicing facto 99.7 1.7E-17 5.8E-22 124.5 10.8 76 291-372 9-85 (85)
129 3lqv_A PRE-mRNA branch site pr 99.7 1.4E-17 4.9E-22 132.6 11.0 81 292-375 6-86 (115)
130 2hgn_A Heterogeneous nuclear r 99.7 8.5E-19 2.9E-23 143.2 3.8 82 292-376 44-125 (139)
131 2hgl_A HNRPF protein, heteroge 99.7 5.6E-18 1.9E-22 138.0 8.6 79 292-372 42-123 (136)
132 2jvr_A Nucleolar protein 3; RN 99.7 9.4E-18 3.2E-22 131.5 9.5 79 292-374 26-105 (111)
133 3q2s_C Cleavage and polyadenyl 99.7 5.7E-18 1.9E-22 151.3 9.3 82 293-374 67-150 (229)
134 1wel_A RNA-binding protein 12; 99.7 2E-18 6.7E-23 139.4 5.7 82 291-373 22-103 (124)
135 1iqt_A AUF1, heterogeneous nuc 99.7 2.2E-18 7.7E-23 126.0 5.5 75 296-371 1-75 (75)
136 1why_A Hypothetical protein ri 99.7 1.6E-17 5.5E-22 127.9 10.5 79 291-375 14-94 (97)
137 1fj7_A Nucleolin RBD1, protein 99.7 1.2E-18 4E-23 135.4 4.1 83 292-376 15-97 (101)
138 2cpj_A Non-POU domain-containi 99.7 1.4E-17 4.7E-22 128.9 9.9 80 291-376 12-91 (99)
139 2krb_A Eukaryotic translation 99.7 3.5E-18 1.2E-22 126.9 6.1 72 295-368 2-80 (81)
140 2cpx_A Hypothetical protein FL 99.7 3.4E-18 1.1E-22 136.2 6.2 85 292-376 23-107 (115)
141 1x4g_A Nucleolysin TIAR; struc 99.7 2.7E-17 9.1E-22 129.6 11.3 79 292-376 23-101 (109)
142 1nu4_A U1A RNA binding domain; 99.7 9.7E-18 3.3E-22 129.2 8.2 81 292-375 6-90 (97)
143 2dnp_A RNA-binding protein 14; 99.7 4.1E-17 1.4E-21 123.8 11.5 77 291-375 6-82 (90)
144 2dnn_A RNA-binding protein 12; 99.7 1.7E-17 5.7E-22 129.8 9.5 76 294-372 16-91 (109)
145 2dgt_A RNA-binding protein 30; 99.7 5.5E-17 1.9E-21 123.6 12.1 78 291-376 7-84 (92)
146 2jvo_A Nucleolar protein 3; nu 99.7 2.3E-17 8E-22 129.4 10.2 77 291-375 28-104 (108)
147 2la4_A Nuclear and cytoplasmic 99.7 1.3E-17 4.6E-22 129.4 8.5 77 292-374 25-101 (101)
148 1wf1_A RNA-binding protein RAL 99.7 3.5E-17 1.2E-21 129.1 11.0 75 293-375 26-101 (110)
149 2e5j_A Methenyltetrahydrofolat 99.7 3.3E-17 1.1E-21 126.2 10.5 79 292-375 17-95 (97)
150 2hvz_A Splicing factor, argini 99.7 1.3E-17 4.6E-22 129.4 8.3 76 295-375 1-76 (101)
151 2xnq_A Nuclear polyadenylated 99.7 5.4E-17 1.9E-21 124.7 11.6 76 291-374 19-95 (97)
152 1x4f_A Matrin 3; structural ge 99.7 4.7E-18 1.6E-22 132.7 5.7 79 291-375 22-103 (112)
153 2f3j_A RNA and export factor b 99.7 2.1E-17 7.1E-22 141.5 10.2 83 292-375 86-168 (177)
154 2lmi_A GRSF-1, G-rich sequence 99.7 3.6E-18 1.2E-22 134.0 4.8 80 291-372 8-90 (107)
155 1whx_A Hypothetical protein ri 99.7 2E-17 6.8E-22 130.5 8.6 77 294-376 10-86 (111)
156 1fjc_A Nucleolin RBD2, protein 99.7 1.8E-17 6.3E-22 127.4 8.1 79 292-375 14-92 (96)
157 2diu_A KIAA0430 protein; struc 99.7 3.6E-17 1.2E-21 120.9 8.9 73 293-375 7-85 (96)
158 3zzy_A Polypyrimidine tract-bi 99.7 8.7E-17 3E-21 128.5 11.7 78 294-376 28-108 (130)
159 2cqh_A IGF-II mRNA-binding pro 99.7 3.9E-17 1.3E-21 124.7 9.1 78 292-376 6-85 (93)
160 2lcw_A RNA-binding protein FUS 99.5 9.9E-19 3.4E-23 139.5 0.0 84 292-375 5-96 (116)
161 2dha_A FLJ20171 protein; RRM d 99.7 2E-17 6.8E-22 132.2 7.5 79 292-372 21-103 (123)
162 4f02_A Polyadenylate-binding p 99.7 8.9E-17 3E-21 142.6 12.5 83 292-374 13-95 (213)
163 2cpd_A Apobec-1 stimulating pr 99.7 2E-16 6.8E-21 122.2 12.8 78 291-376 12-91 (99)
164 2xs2_A Deleted in azoospermia- 99.7 3.5E-17 1.2E-21 127.3 8.3 80 293-375 8-87 (102)
165 1sjr_A Polypyrimidine tract-bi 99.7 1.1E-16 3.8E-21 132.8 11.7 78 294-375 46-125 (164)
166 2pe8_A Splicing factor 45; RRM 99.7 1.4E-16 4.7E-21 123.8 11.5 81 292-372 6-92 (105)
167 2kvi_A Nuclear polyadenylated 99.7 4.7E-17 1.6E-21 125.0 8.4 77 292-376 8-85 (96)
168 2e44_A Insulin-like growth fac 99.7 9.3E-17 3.2E-21 123.4 10.0 80 292-375 13-93 (96)
169 2cq2_A Hypothetical protein LO 99.7 7.2E-17 2.5E-21 126.0 9.4 79 291-375 22-107 (114)
170 3egn_A RNA-binding protein 40; 99.7 2.1E-17 7.2E-22 137.0 6.7 82 291-375 42-131 (143)
171 2hgm_A HNRPF protein, heteroge 99.7 3.2E-17 1.1E-21 131.3 7.1 80 291-373 39-120 (126)
172 1fxl_A Paraneoplastic encephal 99.7 2.3E-16 7.8E-21 134.2 12.7 82 294-375 2-83 (167)
173 1x5p_A Negative elongation fac 99.7 3.3E-16 1.1E-20 120.5 12.2 78 291-376 12-89 (97)
174 2e5g_A U6 snRNA-specific termi 99.7 1.4E-16 4.8E-21 121.8 9.9 78 292-375 6-83 (94)
175 2wbr_A GW182, gawky, LD47780P; 99.7 1.3E-16 4.4E-21 116.9 9.1 73 173-257 6-79 (89)
176 2e5i_A Heterogeneous nuclear r 99.7 2.5E-16 8.4E-21 125.5 11.5 75 296-376 27-104 (124)
177 4fxv_A ELAV-like protein 1; RN 99.7 1.4E-17 4.9E-22 128.4 4.1 80 172-257 17-97 (99)
178 1b7f_A Protein (SXL-lethal pro 99.7 1.9E-16 6.5E-21 134.9 11.4 83 293-375 2-84 (168)
179 1wg1_A KIAA1579 protein, homol 99.7 1.2E-16 4.2E-21 120.5 8.7 76 293-375 4-79 (88)
180 2lxi_A RNA-binding protein 10; 99.7 7.5E-17 2.6E-21 122.3 7.1 80 174-259 1-83 (91)
181 1sjq_A Polypyrimidine tract-bi 99.7 2.2E-16 7.6E-21 121.4 9.6 77 172-260 14-93 (105)
182 3beg_B Splicing factor, argini 99.7 1.4E-16 4.8E-21 126.6 7.1 74 293-373 15-93 (115)
183 3lqv_A PRE-mRNA branch site pr 99.7 6E-17 2.1E-21 128.9 4.8 102 173-320 7-109 (115)
184 2hvz_A Splicing factor, argini 99.6 1.9E-16 6.6E-21 122.8 7.3 74 175-260 1-76 (101)
185 1l3k_A Heterogeneous nuclear r 99.6 6.1E-16 2.1E-20 135.3 11.4 84 291-375 10-93 (196)
186 3r27_A HnRNP L, heterogeneous 99.6 3E-16 1E-20 119.5 7.9 76 172-259 19-97 (100)
187 1fj7_A Nucleolin RBD1, protein 99.6 9.1E-16 3.1E-20 119.0 10.7 82 172-260 15-96 (101)
188 3d2w_A TAR DNA-binding protein 99.6 6.2E-16 2.1E-20 116.7 9.2 75 292-375 9-85 (89)
189 2dnl_A Cytoplasmic polyadenyla 99.6 3.7E-16 1.3E-20 124.0 7.6 78 292-372 6-86 (114)
190 3tyt_A Heterogeneous nuclear r 99.6 1.3E-15 4.5E-20 133.8 10.7 78 293-375 3-81 (205)
191 2lkz_A RNA-binding protein 5; 99.6 1.1E-16 3.8E-21 121.9 3.3 82 171-258 6-94 (95)
192 2hzc_A Splicing factor U2AF 65 99.6 1.1E-15 3.8E-20 115.0 8.8 71 293-370 5-86 (87)
193 2bz2_A Negative elongation fac 99.6 1.3E-15 4.5E-20 121.8 9.3 77 292-376 37-113 (121)
194 1x4a_A Splicing factor, argini 99.6 1.3E-15 4.3E-20 119.9 9.0 82 170-260 18-100 (109)
195 3md3_A Nuclear and cytoplasmic 99.6 2E-15 6.8E-20 128.1 10.9 80 295-375 1-80 (166)
196 3pgw_A U1-A; protein-RNA compl 99.6 6.5E-15 2.2E-19 136.5 15.2 82 291-375 6-91 (282)
197 2cpz_A CUG triplet repeat RNA- 99.6 4.7E-16 1.6E-20 123.7 6.4 85 170-260 21-106 (115)
198 3v4m_A Splicing factor U2AF 65 99.6 1.7E-15 5.7E-20 117.7 9.2 81 292-372 3-95 (105)
199 2qfj_A FBP-interacting repress 99.6 1.4E-15 4.9E-20 135.0 9.9 82 294-375 28-109 (216)
200 2jvr_A Nucleolar protein 3; RN 99.6 1.3E-15 4.5E-20 119.3 8.1 78 171-258 25-104 (111)
201 2e5j_A Methenyltetrahydrofolat 99.6 2.1E-15 7.1E-20 116.0 9.1 78 171-259 16-94 (97)
202 1x4g_A Nucleolysin TIAR; struc 99.6 6.3E-15 2.1E-19 115.9 11.9 81 168-260 19-100 (109)
203 2hzc_A Splicing factor U2AF 65 99.6 3.2E-15 1.1E-19 112.4 9.6 84 172-256 4-87 (87)
204 2cq1_A PTB-like protein L; RRM 99.6 1.4E-15 4.9E-20 117.1 7.7 77 172-260 13-92 (101)
205 2la4_A Nuclear and cytoplasmic 99.6 1.7E-15 6E-20 117.4 8.2 76 171-258 24-100 (101)
206 1x4d_A Matrin 3; structural ge 99.6 4.7E-16 1.6E-20 119.7 4.9 77 172-260 13-93 (102)
207 1wf0_A TDP-43, TAR DNA-binding 99.6 7.1E-16 2.4E-20 116.3 5.7 78 292-376 3-80 (88)
208 2xnq_A Nuclear polyadenylated 99.6 2.9E-15 9.9E-20 115.0 9.2 77 168-258 16-94 (97)
209 2a3j_A U1 small nuclear ribonu 99.6 1.2E-15 4E-20 122.7 7.3 81 172-261 27-112 (127)
210 1wex_A Hypothetical protein (r 99.6 1.7E-15 5.8E-20 117.4 7.8 77 172-260 13-92 (104)
211 2cqi_A Nucleolysin TIAR; RNA r 99.6 6.2E-15 2.1E-19 114.7 11.1 79 170-260 11-94 (103)
212 3ue2_A Poly(U)-binding-splicin 99.6 3.4E-15 1.2E-19 118.2 9.5 80 293-372 19-107 (118)
213 2cpx_A Hypothetical protein FL 99.6 4.7E-15 1.6E-19 117.8 10.2 83 172-260 23-106 (115)
214 3s8s_A Histone-lysine N-methyl 99.6 1.9E-15 6.4E-20 118.7 7.7 81 173-259 5-86 (110)
215 2dit_A HIV TAT specific factor 99.6 8.7E-15 3E-19 115.6 11.6 82 290-375 11-103 (112)
216 1x5u_A Splicing factor 3B subu 99.6 7E-16 2.4E-20 120.6 4.9 84 171-260 12-96 (105)
217 3mdf_A Peptidyl-prolyl CIS-tra 99.6 6.5E-16 2.2E-20 115.7 4.5 79 172-256 5-84 (85)
218 2ad9_A Polypyrimidine tract-bi 99.6 9.9E-16 3.4E-20 120.9 5.7 77 172-260 29-108 (119)
219 1why_A Hypothetical protein ri 99.6 4.1E-15 1.4E-19 114.3 8.8 76 172-259 15-93 (97)
220 3u1l_A PRE-mRNA-splicing facto 99.6 2.4E-15 8.2E-20 133.4 8.4 78 292-375 132-230 (240)
221 2voo_A Lupus LA protein; RNA-b 99.6 6.8E-15 2.3E-19 127.8 11.1 78 294-373 109-186 (193)
222 2ytc_A PRE-mRNA-splicing facto 99.6 2.3E-15 7.8E-20 112.7 7.0 74 171-256 9-84 (85)
223 2jvo_A Nucleolar protein 3; nu 99.6 3.3E-15 1.1E-19 117.1 8.0 77 169-259 26-103 (108)
224 2cqc_A Arginine/serine-rich sp 99.6 5E-15 1.7E-19 113.4 8.9 82 171-258 12-94 (95)
225 1x5t_A Splicing factor 3B subu 99.6 1.1E-15 3.7E-20 117.4 5.1 82 173-260 4-87 (96)
226 2mss_A Protein (musashi1); RNA 99.6 7.6E-16 2.6E-20 112.4 4.0 75 176-256 1-75 (75)
227 2dgx_A KIAA0430 protein; RRM d 99.6 9.2E-15 3.1E-19 112.1 10.0 76 172-259 7-90 (96)
228 2dgs_A DAZ-associated protein 99.6 4.5E-15 1.5E-19 114.6 8.3 78 171-260 7-90 (99)
229 2cpd_A Apobec-1 stimulating pr 99.6 1.2E-14 4.1E-19 112.1 10.7 77 170-260 11-90 (99)
230 3nmr_A Cugbp ELAV-like family 99.6 7.9E-15 2.7E-19 125.6 10.7 82 294-375 3-89 (175)
231 2cqb_A Peptidyl-prolyl CIS-tra 99.6 1.1E-15 3.8E-20 118.7 4.7 83 172-260 10-93 (102)
232 1whx_A Hypothetical protein ri 99.6 2.8E-15 9.5E-20 118.2 7.0 76 171-258 7-83 (111)
233 2cq3_A RNA-binding protein 9; 99.6 7.8E-15 2.7E-19 114.1 9.4 79 170-260 11-94 (103)
234 3p5t_L Cleavage and polyadenyl 99.6 1.3E-15 4.5E-20 115.3 4.8 80 175-260 2-84 (90)
235 2cpj_A Non-POU domain-containi 99.6 2.3E-15 7.7E-20 116.2 6.2 77 171-259 12-89 (99)
236 1u6f_A Tcubp1, RNA-binding pro 99.6 2.5E-14 8.6E-19 117.7 12.8 85 170-260 38-123 (139)
237 2cqp_A RNA-binding protein 12; 99.6 1.9E-15 6.6E-20 116.4 5.6 81 172-258 13-94 (98)
238 2jwn_A Embryonic polyadenylate 99.6 1.8E-15 6.1E-20 122.1 5.6 85 169-259 31-115 (124)
239 2dnq_A RNA-binding protein 4B; 99.6 8.1E-15 2.8E-19 110.9 8.9 75 172-260 6-81 (90)
240 2cpe_A RNA-binding protein EWS 99.6 1.7E-15 5.9E-20 120.0 5.4 91 170-260 11-104 (113)
241 2cph_A RNA binding motif prote 99.6 8.8E-15 3E-19 114.7 9.4 85 170-260 11-98 (107)
242 2x1f_A MRNA 3'-END-processing 99.6 8E-15 2.7E-19 112.4 8.9 82 174-261 2-84 (96)
243 2fy1_A RNA-binding motif prote 99.6 6.5E-15 2.2E-19 117.0 8.6 82 172-260 5-87 (116)
244 2cjk_A Nuclear polyadenylated 99.6 4E-15 1.4E-19 126.5 7.9 78 294-373 3-80 (167)
245 2rs2_A Musashi-1, RNA-binding 99.6 6.8E-15 2.3E-19 115.6 8.6 86 168-259 19-104 (109)
246 1x4c_A Splicing factor, argini 99.6 1.1E-14 3.6E-19 114.3 9.7 76 172-260 13-94 (108)
247 1s79_A Lupus LA protein; RRM, 99.6 4.2E-15 1.4E-19 115.2 7.1 82 171-259 8-89 (103)
248 2e5h_A Zinc finger CCHC-type a 99.6 6.8E-15 2.3E-19 112.4 8.2 75 171-257 13-94 (94)
249 2err_A Ataxin-2-binding protei 99.6 2.7E-15 9.2E-20 117.9 6.1 84 168-259 23-107 (109)
250 3ucg_A Polyadenylate-binding p 99.6 8.9E-16 3E-20 116.1 3.1 82 172-259 4-85 (89)
251 2cpf_A RNA binding motif prote 99.6 6.8E-15 2.3E-19 113.3 8.1 82 173-260 4-89 (98)
252 2ek1_A RNA-binding protein 12; 99.6 1.8E-15 6.3E-20 115.8 4.8 79 173-257 14-93 (95)
253 2dnp_A RNA-binding protein 14; 99.6 1.5E-14 5.2E-19 109.4 9.8 76 171-260 6-82 (90)
254 2la6_A RNA-binding protein FUS 99.6 9.3E-16 3.2E-20 118.4 3.1 83 172-256 11-98 (99)
255 3s7r_A Heterogeneous nuclear r 99.6 5.6E-15 1.9E-19 111.1 7.3 81 170-256 7-87 (87)
256 2div_A TRNA selenocysteine ass 99.6 1.6E-15 5.4E-20 117.1 4.3 83 171-259 6-94 (99)
257 1x4f_A Matrin 3; structural ge 99.6 2.9E-15 9.8E-20 116.9 5.7 78 171-260 22-103 (112)
258 1whw_A Hypothetical protein ri 99.6 1.3E-14 4.4E-19 112.0 9.3 83 172-260 6-89 (99)
259 2dnz_A Probable RNA-binding pr 99.6 9.5E-15 3.3E-19 111.8 8.4 82 173-260 4-86 (95)
260 2dgp_A Bruno-like 4, RNA bindi 99.6 2.9E-15 1E-19 117.2 5.6 85 170-260 9-97 (106)
261 3md1_A Nuclear and cytoplasmic 99.6 7.9E-15 2.7E-19 109.2 7.7 79 175-259 2-81 (83)
262 2khc_A Testis-specific RNP-typ 99.6 1.3E-14 4.3E-19 115.9 9.4 81 170-256 36-117 (118)
263 2f3j_A RNA and export factor b 99.6 3.5E-14 1.2E-18 121.5 12.7 80 172-258 86-166 (177)
264 2dgv_A HnRNP M, heterogeneous 99.6 3.4E-15 1.2E-19 113.5 5.8 80 172-259 6-86 (92)
265 1wel_A RNA-binding protein 12; 99.6 1.4E-15 4.8E-20 122.6 3.7 81 172-258 23-103 (124)
266 1x4b_A Heterogeneous nuclear r 99.5 2.2E-15 7.4E-20 120.0 4.6 85 170-260 23-107 (116)
267 2j76_E EIF-4B, EIF4B, eukaryot 99.5 3.9E-16 1.3E-20 120.8 0.2 84 169-259 14-98 (100)
268 2dgo_A Cytotoxic granule-assoc 99.5 1.7E-14 5.7E-19 114.7 9.6 86 170-261 11-97 (115)
269 2dgu_A Heterogeneous nuclear r 99.5 3.2E-14 1.1E-18 110.5 11.1 75 172-260 9-84 (103)
270 2ywk_A Putative RNA-binding pr 99.5 8.7E-15 3E-19 112.0 7.6 76 170-257 12-93 (95)
271 1iqt_A AUF1, heterogeneous nuc 99.5 1.9E-15 6.5E-20 110.2 3.7 75 176-256 1-75 (75)
272 3ns6_A Eukaryotic translation 99.5 8.5E-16 2.9E-20 118.8 1.9 80 173-258 5-92 (100)
273 2jrs_A RNA-binding protein 39; 99.5 1.6E-15 5.6E-20 118.8 3.4 83 171-259 23-106 (108)
274 2dnm_A SRP46 splicing factor; 99.5 5.6E-15 1.9E-19 114.9 6.4 84 171-260 10-94 (103)
275 2cq4_A RNA binding motif prote 99.5 6.4E-15 2.2E-19 116.9 6.8 83 170-258 21-103 (114)
276 4a8x_A RNA-binding protein wit 99.5 1.2E-14 4E-19 109.6 7.9 80 173-258 3-84 (88)
277 2adc_A Polypyrimidine tract-bi 99.5 1.4E-14 4.9E-19 129.8 9.8 78 292-374 32-110 (229)
278 2d9p_A Polyadenylate-binding p 99.5 6.8E-15 2.3E-19 114.4 6.7 82 171-260 12-94 (103)
279 2cq0_A Eukaryotic translation 99.5 1.1E-15 3.9E-20 118.9 2.2 84 171-260 12-96 (103)
280 3bs9_A Nucleolysin TIA-1 isofo 99.5 8.1E-15 2.8E-19 110.2 6.8 80 173-258 5-85 (87)
281 1p27_B RNA-binding protein 8A; 99.5 6.9E-15 2.4E-19 115.0 6.7 83 171-259 20-103 (106)
282 1x5s_A Cold-inducible RNA-bind 99.5 1.1E-14 3.7E-19 113.1 7.7 84 171-260 9-93 (102)
283 2do4_A Squamous cell carcinoma 99.5 1.4E-14 4.8E-19 112.0 8.3 83 170-259 13-96 (100)
284 1x4h_A RNA-binding protein 28; 99.5 2.1E-14 7.2E-19 113.3 9.5 84 171-260 12-102 (111)
285 1jmt_A Splicing factor U2AF 35 99.5 3.5E-15 1.2E-19 115.8 4.8 72 299-371 20-103 (104)
286 2fc9_A NCL protein; structure 99.5 3.9E-15 1.3E-19 115.4 5.1 81 170-260 11-92 (101)
287 3n9u_C Cleavage and polyadenyl 99.5 2.5E-15 8.5E-20 125.7 4.2 81 172-258 53-136 (156)
288 2dh8_A DAZ-associated protein 99.5 1.7E-15 5.8E-20 118.3 2.9 85 170-260 12-96 (105)
289 2dgt_A RNA-binding protein 30; 99.5 1.9E-14 6.5E-19 109.4 8.7 76 171-260 7-83 (92)
290 2cq2_A Hypothetical protein LO 99.5 1.6E-14 5.3E-19 112.8 8.3 76 172-259 23-106 (114)
291 2cpy_A RNA-binding protein 12; 99.5 1.9E-15 6.4E-20 119.9 3.1 83 171-260 12-95 (114)
292 1wi8_A EIF-4B, eukaryotic tran 99.5 2.3E-15 7.8E-20 117.4 3.5 82 172-260 13-95 (104)
293 2dnh_A Bruno-like 5, RNA bindi 99.5 1.2E-14 4.1E-19 113.5 7.7 83 171-260 12-98 (105)
294 2db1_A Heterogeneous nuclear r 99.5 3.6E-15 1.2E-19 118.9 4.8 81 171-258 14-97 (118)
295 2kxn_B Transformer-2 protein h 99.5 1.1E-14 3.9E-19 117.8 7.6 83 171-259 43-126 (129)
296 1fjc_A Nucleolin RBD2, protein 99.5 5.6E-15 1.9E-19 113.3 5.5 79 170-259 12-91 (96)
297 2m2b_A RNA-binding protein 10; 99.5 3.7E-15 1.3E-19 121.3 4.7 86 170-260 19-109 (131)
298 2dng_A Eukaryotic translation 99.5 2.1E-15 7.3E-20 117.3 3.1 82 172-260 13-94 (103)
299 2cqh_A IGF-II mRNA-binding pro 99.5 5.9E-15 2E-19 112.5 5.4 77 172-260 6-84 (93)
300 3egn_A RNA-binding protein 40; 99.5 1.6E-14 5.5E-19 119.5 7.7 88 172-260 43-131 (143)
301 1x5p_A Negative elongation fac 99.5 4.9E-14 1.7E-18 108.2 9.8 76 171-260 12-88 (97)
302 1p1t_A Cleavage stimulation fa 99.5 1.9E-15 6.5E-20 117.8 1.8 85 171-261 5-90 (104)
303 2dgw_A Probable RNA-binding pr 99.5 5.5E-15 1.9E-19 112.2 4.3 80 172-259 8-87 (91)
304 1fje_B Nucleolin RBD12, protei 99.5 7.3E-15 2.5E-19 126.0 5.5 83 291-375 10-92 (175)
305 1wg5_A Heterogeneous nuclear r 99.5 4.1E-15 1.4E-19 115.8 3.6 80 172-258 13-93 (104)
306 2nlw_A Eukaryotic translation 99.5 2.1E-14 7.2E-19 112.0 7.5 82 171-260 12-101 (105)
307 1wf1_A RNA-binding protein RAL 99.5 2.8E-14 9.5E-19 112.4 8.2 74 172-259 25-100 (110)
308 2diu_A KIAA0430 protein; struc 99.5 2.8E-14 9.6E-19 105.4 7.6 71 174-260 8-85 (96)
309 3ulh_A THO complex subunit 4; 99.5 2.1E-14 7E-19 112.5 7.3 79 172-257 27-106 (107)
310 1oo0_B CG8781-PA, drosophila Y 99.5 2.5E-14 8.4E-19 112.7 7.7 83 171-259 23-106 (110)
311 1nu4_A U1A RNA binding domain; 99.5 2.3E-14 8E-19 110.1 7.3 77 172-260 6-90 (97)
312 2hgl_A HNRPF protein, heteroge 99.5 4.7E-15 1.6E-19 120.6 3.6 81 171-258 41-124 (136)
313 2dhg_A TRNA selenocysteine ass 99.5 3.9E-14 1.3E-18 110.3 8.7 82 172-260 7-91 (104)
314 2cqg_A TDP-43, TAR DNA-binding 99.5 6E-14 2E-18 109.0 9.4 84 170-260 11-94 (103)
315 2cqd_A RNA-binding region cont 99.5 9.6E-14 3.3E-18 110.4 10.9 84 169-259 12-96 (116)
316 2do0_A HnRNP M, heterogeneous 99.5 4.3E-14 1.5E-18 112.0 8.8 82 171-259 12-94 (114)
317 2e5g_A U6 snRNA-specific termi 99.5 4.4E-14 1.5E-18 107.8 8.5 77 172-260 6-83 (94)
318 2fc8_A NCL protein; structure 99.5 6.7E-15 2.3E-19 114.3 3.9 81 171-260 12-93 (102)
319 2dis_A Unnamed protein product 99.5 1E-13 3.5E-18 108.9 10.7 83 173-260 7-93 (109)
320 3ex7_B RNA-binding protein 8A; 99.5 2.3E-14 7.9E-19 115.8 7.0 84 171-260 19-103 (126)
321 2krb_A Eukaryotic translation 99.5 2.2E-14 7.4E-19 106.3 6.1 72 174-253 1-80 (81)
322 1wez_A HnRNP H', FTP-3, hetero 99.5 2.6E-15 8.8E-20 116.3 0.9 79 172-258 13-91 (102)
323 2lea_A Serine/arginine-rich sp 99.5 6E-15 2.1E-19 120.5 3.1 84 171-260 44-128 (135)
324 2kt5_A RNA and export factor-b 99.5 5E-14 1.7E-18 113.5 8.4 82 171-259 32-114 (124)
325 1wg1_A KIAA1579 protein, homol 99.5 1.5E-14 5.1E-19 108.9 5.0 73 173-258 4-77 (88)
326 1h2v_Z 20 kDa nuclear CAP bind 99.5 3.9E-14 1.3E-18 119.0 8.1 85 170-260 35-120 (156)
327 2dha_A FLJ20171 protein; RRM d 99.5 1.1E-14 3.6E-19 116.3 4.2 83 171-258 20-104 (123)
328 2kvi_A Nuclear polyadenylated 99.5 1.7E-14 5.7E-19 110.6 5.1 75 171-259 7-83 (96)
329 2kn4_A Immunoglobulin G-bindin 99.5 2.2E-14 7.4E-19 120.9 6.2 82 172-259 68-150 (158)
330 2cpi_A CCR4-NOT transcription 99.5 2.3E-14 7.8E-19 113.0 5.9 77 172-260 13-102 (111)
331 2dnn_A RNA-binding protein 12; 99.5 2.7E-14 9.4E-19 111.5 6.2 78 173-258 15-92 (109)
332 2lmi_A GRSF-1, G-rich sequence 99.5 4.2E-15 1.4E-19 116.4 1.5 81 171-258 8-91 (107)
333 1qm9_A Polypyrimidine tract-bi 99.5 3.1E-14 1.1E-18 124.6 7.2 77 294-375 3-80 (198)
334 2i2y_A Fusion protein consists 99.5 8.3E-14 2.8E-18 116.1 9.4 78 170-259 69-148 (150)
335 3s6e_A RNA-binding protein 39; 99.5 1.2E-13 4.1E-18 108.4 9.7 76 292-371 5-90 (114)
336 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 1E-13 3.5E-18 114.2 9.6 81 170-256 59-140 (140)
337 2e44_A Insulin-like growth fac 99.5 7.9E-14 2.7E-18 106.8 8.1 76 172-259 13-92 (96)
338 1uaw_A Mouse-musashi-1; RNP-ty 99.5 4.2E-15 1.4E-19 109.0 0.8 75 175-256 1-76 (77)
339 1x4e_A RNA binding motif, sing 99.5 1.3E-14 4.4E-19 108.6 3.4 79 173-257 4-83 (85)
340 3sde_A Paraspeckle component 1 99.5 1.1E-13 3.8E-18 126.6 10.1 78 292-375 20-97 (261)
341 2yh0_A Splicing factor U2AF 65 99.5 4.1E-13 1.4E-17 117.4 13.1 75 294-375 4-89 (198)
342 2lcw_A RNA-binding protein FUS 99.2 3.9E-15 1.3E-19 118.5 0.0 90 171-260 4-96 (116)
343 2d9o_A DNAJ (HSP40) homolog, s 99.5 4.2E-13 1.4E-17 102.7 11.1 76 294-376 10-92 (100)
344 2ki2_A SS-DNA binding protein 99.5 1.7E-14 5.9E-19 109.2 3.2 79 175-260 2-81 (90)
345 3beg_B Splicing factor, argini 99.5 5.8E-14 2E-18 111.3 6.2 73 172-257 14-92 (115)
346 1sjr_A Polypyrimidine tract-bi 99.5 1.8E-13 6E-18 113.6 9.2 77 173-259 45-124 (164)
347 1x5o_A RNA binding motif, sing 99.5 4E-14 1.4E-18 112.2 5.0 81 170-257 21-110 (114)
348 2hgn_A Heterogeneous nuclear r 99.4 6.2E-15 2.1E-19 120.3 -0.4 82 170-259 42-123 (139)
349 2hgm_A HNRPF protein, heteroge 99.4 1.2E-14 4.1E-19 116.3 1.2 75 172-257 40-119 (126)
350 3q2s_C Cleavage and polyadenyl 99.4 1.6E-14 5.5E-19 128.9 1.9 80 173-258 67-149 (229)
351 3zzy_A Polypyrimidine tract-bi 99.4 1.9E-13 6.5E-18 109.1 7.6 75 174-259 28-106 (130)
352 2e5i_A Heterogeneous nuclear r 99.4 2.6E-13 8.9E-18 107.9 8.2 73 175-259 26-102 (124)
353 1rk8_A CG8781-PA, CG8781-PA pr 99.4 1.3E-13 4.6E-18 116.8 6.8 83 172-260 70-153 (165)
354 2g4b_A Splicing factor U2AF 65 99.4 4.1E-13 1.4E-17 114.5 9.7 75 294-375 4-89 (172)
355 3pgw_S U1-70K; protein-RNA com 99.4 1.3E-13 4.6E-18 134.5 7.5 83 172-260 100-183 (437)
356 2bz2_A Negative elongation fac 99.4 1.6E-13 5.3E-18 109.7 6.3 74 172-259 37-111 (121)
357 3d2w_A TAR DNA-binding protein 99.4 2.6E-13 8.9E-18 102.2 6.9 75 170-259 7-84 (89)
358 3tht_A Alkylated DNA repair pr 99.4 5.3E-13 1.8E-17 124.8 9.6 76 291-372 15-97 (345)
359 2xs2_A Deleted in azoospermia- 99.4 9.5E-14 3.2E-18 107.7 2.5 80 171-258 6-85 (102)
360 1wf0_A TDP-43, TAR DNA-binding 99.4 3.4E-13 1.2E-17 101.5 4.9 75 173-260 4-79 (88)
361 3u1l_A PRE-mRNA-splicing facto 99.4 4.8E-13 1.6E-17 118.6 6.5 78 171-260 131-230 (240)
362 2j8a_A Histone-lysine N-methyl 99.3 2.9E-13 9.8E-18 105.9 1.5 77 175-257 3-94 (136)
363 2voo_A Lupus LA protein; RNA-b 99.3 2.1E-12 7.2E-17 112.0 6.7 81 171-260 106-188 (193)
364 2dnl_A Cytoplasmic polyadenyla 99.3 3.2E-12 1.1E-16 101.1 7.1 76 172-256 6-85 (114)
365 2pe8_A Splicing factor 45; RRM 99.3 1.2E-11 4E-16 95.8 7.5 77 172-257 6-92 (105)
366 2dit_A HIV TAT specific factor 99.2 1.4E-11 4.6E-16 97.1 7.1 78 172-259 13-102 (112)
367 2dnr_A Synaptojanin-1; RRM dom 99.2 6.5E-11 2.2E-15 86.7 8.3 72 294-374 7-86 (91)
368 1owx_A Lupus LA protein, SS-B, 99.2 7.5E-11 2.6E-15 92.4 8.7 75 291-371 15-93 (121)
369 3tht_A Alkylated DNA repair pr 99.2 5.3E-11 1.8E-15 111.3 8.1 75 171-257 15-97 (345)
370 3dxb_A Thioredoxin N-terminall 99.1 4.6E-10 1.6E-14 99.8 10.1 79 294-372 124-211 (222)
371 3v4m_A Splicing factor U2AF 65 99.1 2.5E-10 8.6E-15 88.3 6.9 73 173-257 4-95 (105)
372 2d9o_A DNAJ (HSP40) homolog, s 99.0 1.3E-09 4.6E-14 83.1 9.4 74 174-260 10-91 (100)
373 1ufw_A Synaptojanin 2; RNP dom 99.0 4E-10 1.4E-14 82.8 6.0 73 292-373 13-94 (95)
374 1jmt_A Splicing factor U2AF 35 99.0 1.3E-10 4.6E-15 89.7 2.6 66 179-256 20-103 (104)
375 3ue2_A Poly(U)-binding-splicin 98.9 1.7E-09 5.8E-14 85.3 5.8 80 172-257 18-107 (118)
376 3s6e_A RNA-binding protein 39; 98.8 3.9E-09 1.3E-13 82.6 6.5 73 173-257 6-91 (114)
377 2dnr_A Synaptojanin-1; RRM dom 98.8 1.6E-08 5.4E-13 74.0 6.6 70 174-257 7-84 (91)
378 1owx_A Lupus LA protein, SS-B, 98.7 1.7E-08 6E-13 79.0 6.3 72 172-255 16-92 (121)
379 2l9w_A U4/U6 snRNA-associated- 98.7 1.2E-07 4.2E-12 70.9 9.6 73 293-371 20-97 (117)
380 1ufw_A Synaptojanin 2; RNP dom 98.6 3.4E-08 1.2E-12 72.6 4.8 71 173-257 14-93 (95)
381 2l9w_A U4/U6 snRNA-associated- 98.4 1.1E-06 3.8E-11 65.8 8.8 76 172-254 19-95 (117)
382 2dhx_A Poly (ADP-ribose) polym 98.3 4.6E-06 1.6E-10 62.0 8.7 74 173-255 7-80 (104)
383 3dxb_A Thioredoxin N-terminall 98.0 3.9E-06 1.3E-10 74.2 4.8 78 174-257 124-211 (222)
384 1wey_A Calcipressin 1; structu 98.0 2.1E-05 7.3E-10 58.8 7.4 75 292-372 3-82 (104)
385 1uw4_A UPF3X; nonsense mediate 97.8 9.2E-05 3.1E-09 54.5 8.7 78 295-372 2-86 (91)
386 1whv_A Poly(A)-specific ribonu 97.7 0.00019 6.4E-09 52.7 8.6 56 292-356 14-69 (100)
387 2dhx_A Poly (ADP-ribose) polym 97.7 0.00063 2.2E-08 50.6 10.7 75 292-375 6-85 (104)
388 1wwh_A Nucleoporin 35, nucleop 97.6 0.00028 9.5E-09 54.4 8.3 72 293-372 23-95 (119)
389 1wwh_A Nucleoporin 35, nucleop 97.3 0.0012 4.1E-08 50.8 8.1 73 171-256 21-94 (119)
390 1wey_A Calcipressin 1; structu 97.2 0.00044 1.5E-08 51.7 5.1 73 173-257 4-82 (104)
391 2l08_A Regulator of nonsense t 97.1 0.0006 2.1E-08 50.4 4.9 78 295-372 10-94 (97)
392 3ctr_A Poly(A)-specific ribonu 97.0 0.0011 3.7E-08 48.9 5.4 53 296-357 8-60 (101)
393 3p3d_A Nucleoporin 53; structu 96.8 0.0013 4.4E-08 51.3 4.8 77 294-372 7-97 (132)
394 1uw4_A UPF3X; nonsense mediate 96.3 0.0044 1.5E-07 45.5 4.5 64 175-248 2-72 (91)
395 3p3d_A Nucleoporin 53; structu 96.0 0.0042 1.4E-07 48.4 3.3 82 174-256 7-96 (132)
396 1whv_A Poly(A)-specific ribonu 95.6 0.016 5.4E-07 42.6 4.7 52 174-240 16-67 (100)
397 3pq1_A Poly(A) RNA polymerase; 95.5 0.0077 2.6E-07 58.2 3.5 55 295-355 54-108 (464)
398 3pq1_A Poly(A) RNA polymerase; 94.4 0.012 4.2E-07 56.8 1.6 61 170-243 49-110 (464)
399 3ctr_A Poly(A)-specific ribonu 94.3 0.022 7.4E-07 42.0 2.4 51 175-240 7-57 (101)
400 2l08_A Regulator of nonsense t 94.0 0.03 1E-06 41.3 2.6 72 173-248 8-80 (97)
401 3d45_A Poly(A)-specific ribonu 88.3 1.1 3.8E-05 44.1 7.8 55 294-357 440-494 (507)
402 1jmt_B Splicing factor U2AF 65 82.3 0.46 1.6E-05 25.9 1.0 16 112-127 6-21 (28)
403 3d45_A Poly(A)-specific ribonu 62.5 11 0.00037 37.0 5.9 54 174-242 440-494 (507)
404 2g0c_A ATP-dependent RNA helic 59.1 14 0.00046 25.4 4.5 59 305-372 12-75 (76)
405 4eyt_A Telomerase associated p 50.0 65 0.0022 22.8 9.6 55 294-356 12-66 (129)
406 4e8u_A Putative uncharacterize 46.5 36 0.0012 27.7 5.6 49 296-347 14-73 (172)
407 3zzp_A TS9, ribosomal protein 34.2 85 0.0029 21.7 5.2 61 223-320 6-70 (77)
408 3fry_A Probable copper-exporti 29.5 1.2E+02 0.0041 19.8 6.0 54 295-355 7-60 (73)
409 4eyt_A Telomerase associated p 28.6 1.6E+02 0.0053 20.8 6.6 54 172-239 10-63 (129)
410 1xn9_A 30S ribosomal protein S 24.4 2.1E+02 0.0072 20.9 6.4 47 304-351 28-79 (101)
411 4a17_R RPL23A, 60S ribosomal p 22.1 2.1E+02 0.0071 22.6 6.0 56 297-355 89-146 (150)
412 2v94_A RPS24, 30S ribosomal pr 22.0 2.4E+02 0.0083 20.8 6.5 47 304-351 37-88 (107)
413 3u5e_X 60S ribosomal protein L 21.4 2.1E+02 0.0072 22.3 5.8 56 297-355 81-138 (142)
414 3lpe_A Putative transcription 20.9 57 0.0019 23.4 2.4 25 335-359 49-73 (92)
415 3h7h_B Transcription elongatio 20.3 82 0.0028 23.3 3.2 34 321-359 41-74 (106)
416 2xzm_P RPS24E; ribosome, trans 20.2 2.5E+02 0.0087 22.1 6.1 47 304-351 31-82 (149)
No 1
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=2.9e-34 Score=253.23 Aligned_cols=194 Identities=46% Similarity=0.792 Sum_probs=162.0
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHHhCCceecCceEE
Q 013837 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVR 252 (435)
Q Consensus 173 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~l~ 252 (435)
.+++|||+|||+.+|+++|+++|..||.|.++.. .+...|.++.++.++|||||+|.+.++|.+||.|+|..|.|+.|.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~-~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al~l~g~~~~g~~i~ 81 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQ-APGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLK 81 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCS-SSSCSEEEEEEETTTTEEEEEESCSHHHHHHGGGTTEEETTEEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhccccc-CCCCceEEeEecCCCCEEEEEeCCHHHHHHHHHhcCCEEcCceEE
Confidence 4689999999999999999999999999887532 233468999999999999999999999999999999999999999
Q ss_pred EcCCCCCCcchhhcCCCCCCCCCccccccccccCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCC
Q 013837 253 VRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT 332 (435)
Q Consensus 253 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~t 332 (435)
|.++..+..............+ ...........++|||+|||..+|+++|+++|++||.|..|.|+.++.+
T Consensus 82 v~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~ 152 (198)
T 2yh0_A 82 IRRPHDYQPLPGMSENPSVYVP---------GVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSAT 152 (198)
T ss_dssp EECCCCCCCCCCSSSCSSCCCT---------TSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTT
T ss_pred EeCCCCCCCCCCCcCCCcCCCC---------CCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCC
Confidence 9998776432221111000000 0011223356789999999999999999999999999999999999889
Q ss_pred CCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEccCCCC
Q 013837 333 GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSG 376 (435)
Q Consensus 333 g~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~~~~~ 376 (435)
|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.||.++..
T Consensus 153 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 153 GLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp CSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred CCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 99999999999999999999999999999999999999987653
No 2
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=100.00 E-value=4.8e-34 Score=245.97 Aligned_cols=171 Identities=51% Similarity=0.910 Sum_probs=153.8
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHHhCCceecCceE
Q 013837 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAV 251 (435)
Q Consensus 172 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~l 251 (435)
++.++|||+|||+.+|+++|+++|..||.+.++.. .+...|.++.++.++|||||+|.+.++|.+|+.+++..+.|++|
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~-~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i 80 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQ-APGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSL 80 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCS-SSSCSEEEEEEETTTTEEEEEESSHHHHHHHGGGTTCEETTEEC
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhccccc-CCCCceeeeEecCCCCEEEEEeCCHHHHHHHHHhCCcEecCcee
Confidence 35789999999999999999999999998876432 22336889999999999999999999999999999999999999
Q ss_pred EEcCCCCCCcchhhcCCCCCCCCCccccccccccCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCC
Q 013837 252 RVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRD 331 (435)
Q Consensus 252 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~ 331 (435)
.|.++..... .....+|||+|||..+|+++|+++|++||.|..|.|+.++.
T Consensus 81 ~v~~~~~~~~-----------------------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~ 131 (172)
T 2g4b_A 81 KIRRPHDYQP-----------------------------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSA 131 (172)
T ss_dssp EEECCSSCCC-----------------------------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTT
T ss_pred eecCCcccCC-----------------------------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCC
Confidence 9998754421 12357899999999999999999999999999999999988
Q ss_pred CCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 013837 332 TGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (435)
Q Consensus 332 tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~ 372 (435)
+|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.||.
T Consensus 132 ~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 132 TGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp TCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 99999999999999999999999999999999999999983
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=5.4e-34 Score=254.17 Aligned_cols=167 Identities=20% Similarity=0.360 Sum_probs=141.3
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCce
Q 013837 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 250 (435)
Q Consensus 172 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~ 250 (435)
.+.++|||+|||+++|+++|+++|+.||.|..+. ++.+..++.++|||||+|.+.++|.+|+ .+++..+.|+.
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~------i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~ 86 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIR------VCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 86 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEE------EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEE------EecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcc
Confidence 3567999999999999999999999999864421 1111224567899999999999999999 69999999999
Q ss_pred EEEcCCCCCCcchhhcCCCCCCCCCccccccccccCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecC
Q 013837 251 VRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDR 330 (435)
Q Consensus 251 l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~ 330 (435)
|.|.++........ ....+|||+|||..+|+++|+++|+.||.|+.|.|+.+.
T Consensus 87 i~~~~~~~~~~~~~---------------------------~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~ 139 (213)
T 4f02_A 87 VRIMWSQRDPSLRK---------------------------SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE 139 (213)
T ss_dssp CEEEECCCCTHHHH---------------------------HCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET
T ss_pred cccccccccccccc---------------------------cccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC
Confidence 99988754432211 224589999999999999999999999999999999985
Q ss_pred CCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 013837 331 DTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (435)
Q Consensus 331 ~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~~ 373 (435)
+.++|||||+|.+.++|.+||+.|||..|+|+.|.|.+|.+
T Consensus 140 --~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 140 --NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp --TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred --CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 45799999999999999999999999999999999999954
No 4
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.5e-33 Score=237.72 Aligned_cols=164 Identities=21% Similarity=0.366 Sum_probs=142.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCceEEE
Q 013837 175 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVRV 253 (435)
Q Consensus 175 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~l~v 253 (435)
++|||+|||..+|+++|+++|+.||.|..+. +.....+.++|||||+|.+.++|..|+ .++|..+.|+.|.|
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~-------i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v 73 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIK-------IMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKI 73 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEE-------EECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEE-------EEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEE
Confidence 5899999999999999999999999753311 111112456799999999999999999 79999999999999
Q ss_pred cCCCCCCcchhhcCCCCCCCCCccccccccccCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCC
Q 013837 254 RRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTG 333 (435)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg 333 (435)
.++..... .......+|||+|||..+|+++|+++|++||.|..+.++.++.+|
T Consensus 74 ~~~~~~~~---------------------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~ 126 (166)
T 3md3_A 74 NWAFQSQQ---------------------------SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTG 126 (166)
T ss_dssp EECCCCCC---------------------------CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTC
T ss_pred EEcCCCCC---------------------------CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCC
Confidence 98754321 122345789999999999999999999999999999999998899
Q ss_pred CcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 013837 334 NSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (435)
Q Consensus 334 ~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~ 372 (435)
.++|||||+|.+.++|.+|+..|||..|+|+.|.|.||+
T Consensus 127 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 127 SSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp CEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 999999999999999999999999999999999999985
No 5
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=1.3e-33 Score=248.62 Aligned_cols=177 Identities=21% Similarity=0.387 Sum_probs=143.5
Q ss_pred hcccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHHhCCceecCc
Q 013837 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGV 249 (435)
Q Consensus 170 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~l~~~~~~g~ 249 (435)
.....++|||+|||+.+|+++|+++|..||.|..+. ++.+..++.++|||||+|.+.++|.+||++++..|.|+
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~------i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~ 82 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCV------VMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGR 82 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEE------EEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEE------EEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCE
Confidence 345678999999999999999999999999864311 01111134568999999999999999998899999999
Q ss_pred eEEEcCCCCCCcchhhcCCCCCCCCCccccccccccCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeec
Q 013837 250 AVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKD 329 (435)
Q Consensus 250 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~ 329 (435)
.|.|.++........ .......++|||+|||..+|+++|+++|+.||.|..|.|+.+
T Consensus 83 ~l~v~~~~~~~~~~~-----------------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~ 139 (196)
T 1l3k_A 83 VVEPKRAVSREDSQR-----------------------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTD 139 (196)
T ss_dssp ECEEEECCC----------------------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEEC
T ss_pred EeeeecccCcccccc-----------------------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeec
Confidence 999998765432110 112234579999999999999999999999999999999999
Q ss_pred CCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEccCCCC
Q 013837 330 RDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSG 376 (435)
Q Consensus 330 ~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~~~~~ 376 (435)
..+|.++|||||+|.+.++|.+||.. +|..|+|+.|.|.+|.++..
T Consensus 140 ~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~ 185 (196)
T 1l3k_A 140 RGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQE 185 (196)
T ss_dssp TTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC----
T ss_pred CCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChhH
Confidence 88999999999999999999999985 89999999999999977654
No 6
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=100.00 E-value=7.9e-33 Score=239.06 Aligned_cols=166 Identities=17% Similarity=0.355 Sum_probs=147.4
Q ss_pred hcccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHHhCCceecCc
Q 013837 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGV 249 (435)
Q Consensus 170 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~l~~~~~~g~ 249 (435)
.....++|||+|||..+|+++|+++|..||.+.+. .+.+..++.++|||||+|.+.++|.+|++|++..|.|+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~-------~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~ 81 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDL-------AVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGN 81 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTC-------CCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceE-------EEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCe
Confidence 34567899999999999999999999999998762 36778889999999999999999999999999999999
Q ss_pred eEEEcCCCCCCcchhhcCCCCCCCCCccccccccccCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeec
Q 013837 250 AVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKD 329 (435)
Q Consensus 250 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~ 329 (435)
+|.|.++..... ......++|||+|||..+|+++|+++|+.||.|..+
T Consensus 82 ~l~v~~~~~~~~---------------------------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----- 129 (175)
T 1fje_B 82 EIKLEKPKGRDS---------------------------KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----- 129 (175)
T ss_dssp EEEEECCCCSSC---------------------------STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----
T ss_pred EEEEecCCCccc---------------------------cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----
Confidence 999998765421 112345799999999999999999999999988655
Q ss_pred CCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 013837 330 RDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374 (435)
Q Consensus 330 ~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~~~ 374 (435)
..+|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.||.++
T Consensus 130 ~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 130 SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 457899999999999999999999999999999999999999765
No 7
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=8.2e-33 Score=237.22 Aligned_cols=164 Identities=20% Similarity=0.323 Sum_probs=142.6
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCceE
Q 013837 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAV 251 (435)
Q Consensus 173 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~l 251 (435)
+.++|||+|||..+|+++|+++|..||.|..+.+ +.+...+.++|||||+|.+.++|..|+ .+++..+.|++|
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i------~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l 75 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRI------MRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRL 75 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEEC------CEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE------EEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEE
Confidence 4689999999999999999999999998543211 111123446799999999999999999 599999999999
Q ss_pred EEcCCCCCCcchhhcCCCCCCCCCccccccccccCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCC
Q 013837 252 RVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRD 331 (435)
Q Consensus 252 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~ 331 (435)
.|.++..... .....+|||+|||..+|+++|+++|++||.|..+.|+.++.
T Consensus 76 ~v~~~~~~~~-----------------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~ 126 (168)
T 1b7f_A 76 KVSYARPGGE-----------------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKL 126 (168)
T ss_dssp EEEECCCCSS-----------------------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTT
T ss_pred EEEecCCCcc-----------------------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCC
Confidence 9998764321 23457899999999999999999999999999999999988
Q ss_pred CCCcceEEEEEEcCHHHHHHHHHHhCCceeCC--eEEEEEEc
Q 013837 332 TGNSKGYGFCVYQDPAVTDIACAALNGLKMGD--KTLTVRRA 371 (435)
Q Consensus 332 tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g--~~l~V~~a 371 (435)
+|.++|||||+|.+.++|.+|+..|||..|.| +.|+|.||
T Consensus 127 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 127 TGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp TCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 89999999999999999999999999999988 99999986
No 8
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=2.1e-33 Score=251.15 Aligned_cols=184 Identities=26% Similarity=0.401 Sum_probs=150.3
Q ss_pred hhhcccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHH-hCCcee
Q 013837 168 QQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMA-LDGIIF 246 (435)
Q Consensus 168 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~-l~~~~~ 246 (435)
.......++|||+|||..+|+++|+++|..||.|..+. .+.+...+.++|||||+|.+.++|.+|++ |++..|
T Consensus 22 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~------i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~ 95 (216)
T 2qfj_A 22 QGALAIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSID------MSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVML 95 (216)
T ss_dssp HHHHHHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEE------ECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCC
T ss_pred CcccCcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEE------EeecCCCCccCceEEEEeCCHHHHHHHHHHccCCee
Confidence 44556789999999999999999999999999854321 01111245678999999999999999995 999999
Q ss_pred cCceEEEcCCCCCCcchhhcCCCCCCCCCccccccccccCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEE
Q 013837 247 EGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDL 326 (435)
Q Consensus 247 ~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i 326 (435)
.|+.|.|.++........... .........++|||+|||..+|+++|+++|++||.|..|.|
T Consensus 96 ~g~~l~v~~~~~~~~~~~~~~------------------~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i 157 (216)
T 2qfj_A 96 GGRNIKVGRPSNIGQAQPIID------------------QLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATL 157 (216)
T ss_dssp C-CCCEEECCSCCGGGHHHHH------------------HHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEE
T ss_pred CCeeEEEecCCCccccchhhh------------------hhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEE
Confidence 999999998765432211000 00001234579999999999999999999999999999999
Q ss_pred eecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEccCCC
Q 013837 327 VKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASS 375 (435)
Q Consensus 327 ~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~~~~ 375 (435)
+.++.+|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.|+.+..
T Consensus 158 ~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 158 ARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPP 206 (216)
T ss_dssp EECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCS
T ss_pred EecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCC
Confidence 9998899999999999999999999999999999999999999998764
No 9
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.98 E-value=1.5e-31 Score=228.99 Aligned_cols=160 Identities=22% Similarity=0.368 Sum_probs=139.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEE---ecCCCcEEEEEecCHHHHHHHH-HhCCceecCc
Q 013837 174 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVY---INHEKKFAFVEMRTVEEASNAM-ALDGIIFEGV 249 (435)
Q Consensus 174 ~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~---~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~ 249 (435)
.++|||+|||+.+|+++|+++|..||.|.. +..+. .+.++|||||+|.+.++|..|+ .++|..+.|+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~---------v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~ 72 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIES---------CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTK 72 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEE---------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEE---------EEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCc
Confidence 579999999999999999999999998533 11111 3445699999999999999999 5999999999
Q ss_pred eEEEcCCCCCCcchhhcCCCCCCCCCccccccccccCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeec
Q 013837 250 AVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKD 329 (435)
Q Consensus 250 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~ 329 (435)
+|.|.++.+... .....+|||+|||..+|+++|+++|++||.|..+.|+.+
T Consensus 73 ~l~v~~~~~~~~-----------------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~ 123 (167)
T 1fxl_A 73 TIKVSYARPSSA-----------------------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVD 123 (167)
T ss_dssp ECEEEECCCCCG-----------------------------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC
T ss_pred eEEEEecCCCcc-----------------------------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEec
Confidence 999998764321 123468999999999999999999999999999999999
Q ss_pred CCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeE--EEEEEc
Q 013837 330 RDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKT--LTVRRA 371 (435)
Q Consensus 330 ~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~--l~V~~a 371 (435)
..+|.++|||||+|.+.++|.+|++.|||..|.|+. |.|.||
T Consensus 124 ~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 124 QVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp TTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 888999999999999999999999999999999964 999886
No 10
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.98 E-value=3.6e-33 Score=239.22 Aligned_cols=165 Identities=20% Similarity=0.442 Sum_probs=141.1
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHHhCCceecCceEE
Q 013837 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVR 252 (435)
Q Consensus 173 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~l~ 252 (435)
+.++|||+|||+.+|+++|+++|+.||.|..+.+ +.+..++.++|||||+|.+.++|.+|+. ++..+.|+.|.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i------~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~i~ 74 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKI------MKDPATGRSRGFGFLSFEKPSSVDEVVK-TQHILDGKVID 74 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEEC------CCCTTTSSCCSCEEEEESSTHHHHHHHH-SCCEETTEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEE------EECCCCCCccceEEEEEccHHHHHHHHh-cccccCCeEcc
Confidence 5689999999999999999999999998543211 1111235678999999999999999996 46789999999
Q ss_pred EcCCCCCCcchhhcCCCCCCCCCccccccccccCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCC
Q 013837 253 VRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT 332 (435)
Q Consensus 253 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~t 332 (435)
|.++..... .....+|||+|||..+|+++|+++|++||.|..+.|+.++.+
T Consensus 75 v~~~~~~~~-----------------------------~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~ 125 (167)
T 2cjk_A 75 PKRAIPRDE-----------------------------QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDT 125 (167)
T ss_dssp CEECCCHHH-----------------------------HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSS
T ss_pred cccccchhh-----------------------------ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCC
Confidence 987643211 112458999999999999999999999999999999999889
Q ss_pred CCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 013837 333 GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374 (435)
Q Consensus 333 g~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~~~ 374 (435)
|.++|||||+|.+.++|.+|++ ++|..|+|+.|.|.||.++
T Consensus 126 g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 126 GQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp STTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred CccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 9999999999999999999998 8999999999999999765
No 11
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.97 E-value=7.6e-31 Score=226.45 Aligned_cols=165 Identities=21% Similarity=0.327 Sum_probs=136.2
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEec--CCCcEEEEEecCHHHHHHHH-HhCCceec--
Q 013837 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN--HEKKFAFVEMRTVEEASNAM-ALDGIIFE-- 247 (435)
Q Consensus 173 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~--~~~g~afv~f~~~~~a~~a~-~l~~~~~~-- 247 (435)
+.++|||+|||+.+|+++|+++|..||.|..+. .+.+...+ .++|||||+|.+.++|.+|+ .|++..+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~------i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~ 75 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEIN------VLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPG 75 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEE------EEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTT
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEE------EEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccC
Confidence 468999999999999999999999999864411 01111112 56899999999999999999 59998776
Q ss_pred -CceEEEcCCCCCCcchhhcCCCCCCCCCccccccccccCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEE
Q 013837 248 -GVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDL 326 (435)
Q Consensus 248 -g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i 326 (435)
++.+.+.++.... .......+|||+|||..+|+++|+++|++||.|..|.|
T Consensus 76 ~~~~~~~~~~~~~~----------------------------~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~ 127 (175)
T 3nmr_A 76 MHHPIQMKPADSEK----------------------------NNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRI 127 (175)
T ss_dssp CSSCCEEEECGGGC----------------------------CSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE
T ss_pred CccceEEccccccc----------------------------cccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEE
Confidence 5777777654221 11123568999999999999999999999999999999
Q ss_pred eecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeC---CeEEEEEEcc
Q 013837 327 VKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMG---DKTLTVRRAT 372 (435)
Q Consensus 327 ~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~---g~~l~V~~a~ 372 (435)
+.++ +|.++|||||+|.+.++|.+|++.|||..+. |+.|.|.||.
T Consensus 128 ~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 128 LRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp EECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred EECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 9986 5999999999999999999999999998776 4999999984
No 12
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.97 E-value=1.4e-30 Score=229.63 Aligned_cols=185 Identities=15% Similarity=0.124 Sum_probs=138.8
Q ss_pred cCCeEEEcCCC-CCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecC-CCcEEEEEecCHHHHHHHH-HhCCceecCc
Q 013837 173 HARRVYVGGLP-PLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINH-EKKFAFVEMRTVEEASNAM-ALDGIIFEGV 249 (435)
Q Consensus 173 ~~~~l~V~nlp-~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~-~~g~afv~f~~~~~a~~a~-~l~~~~~~g~ 249 (435)
+.++|||+||| ..+|+++|+++|..||. |..+.+.. .+|||||+|.+.++|..|+ .|||..|.|+
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~------------v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 70 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGN------------VEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQ 70 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSC------------EEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCC------------eEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 46799999999 89999999999999997 55555443 5799999999999999999 5999999999
Q ss_pred eEEEcCCCCCCcchhhcCCCCCCCCC-ccccc---cccc----cCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCe
Q 013837 250 AVRVRRPTDYNPTLAAALGPGQPSPN-LNLAA---VGLA----SGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTL 321 (435)
Q Consensus 250 ~l~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~----~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v 321 (435)
+|.|.++.................+. ..... .... ........+..+|||+|||+.+|+++|+++|++||.|
T Consensus 71 ~l~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v 150 (205)
T 3tyt_A 71 KMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVK 150 (205)
T ss_dssp ECEEEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCC
T ss_pred eEEEEEccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCc
Confidence 99999876433210000000000000 00000 0000 0011123456789999999999999999999999999
Q ss_pred --eEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCe----EEEEEEc
Q 013837 322 --HGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDK----TLTVRRA 371 (435)
Q Consensus 322 --~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~----~l~V~~a 371 (435)
..|.|+.+. +..+|||||+|.+.++|.+||..|||..|.|. ++.|+||
T Consensus 151 ~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 151 RPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp CCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred ceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 899988874 55679999999999999999999999999886 5777765
No 13
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=5.9e-30 Score=238.40 Aligned_cols=189 Identities=21% Similarity=0.309 Sum_probs=143.0
Q ss_pred hcccCCeEEEcCCCCCCCHHHHH----HHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCc
Q 013837 170 ATRHARRVYVGGLPPLANEQAIA----TFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGI 244 (435)
Q Consensus 170 ~~~~~~~l~V~nlp~~~t~~~l~----~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~ 244 (435)
.....++|||+|||+.+|+++|+ ++|..||.|.. |.....+.++|||||+|.+.++|.+|+ .|||.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~---------v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 75 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILD---------ILVSRSLKMRGQAFVIFKEVSSATNALRSMQGF 75 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEE---------EEEcCCCCcceEEEEEECCHHHHHHHHHHhcCC
Confidence 34568999999999999999966 89999998643 333336778999999999999999999 79999
Q ss_pred eecCceEEEcCCCCCCcchhhcCCCCCC----------------------------------------------------
Q 013837 245 IFEGVAVRVRRPTDYNPTLAAALGPGQP---------------------------------------------------- 272 (435)
Q Consensus 245 ~~~g~~l~v~~~~~~~~~~~~~~~~~~~---------------------------------------------------- 272 (435)
.|.|+.|.|.++...........+....
T Consensus 76 ~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (282)
T 3pgw_A 76 PFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMH 155 (282)
T ss_pred eeCCcEEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccc
Confidence 9999999999886544211000000000
Q ss_pred ----------CCC----cccccc----------ccc------cCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCee
Q 013837 273 ----------SPN----LNLAAV----------GLA------SGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLH 322 (435)
Q Consensus 273 ----------~~~----~~~~~~----------~~~------~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~ 322 (435)
.+. ...... ... ........+.++|||+|||..+|+++|+++|++||.|.
T Consensus 156 ~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~ 235 (282)
T 3pgw_A 156 HMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFK 235 (282)
T ss_pred cCCCCCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeE
Confidence 000 000000 000 00012233567899999999999999999999999999
Q ss_pred EEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeC-CeEEEEEEcc
Q 013837 323 GFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMG-DKTLTVRRAT 372 (435)
Q Consensus 323 ~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~-g~~l~V~~a~ 372 (435)
.|.|+.++ +|||||+|.+.++|.+||..|||..|. |+.|+|.||+
T Consensus 236 ~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 236 EVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred EEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 99998753 589999999999999999999999999 9999999985
No 14
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.97 E-value=1.2e-29 Score=228.59 Aligned_cols=187 Identities=19% Similarity=0.206 Sum_probs=143.1
Q ss_pred cccCCeEEEcCCCC-CCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCC-CcEEEEEecCHHHHHHHH-HhCCceec
Q 013837 171 TRHARRVYVGGLPP-LANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHE-KKFAFVEMRTVEEASNAM-ALDGIIFE 247 (435)
Q Consensus 171 ~~~~~~l~V~nlp~-~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~-~g~afv~f~~~~~a~~a~-~l~~~~~~ 247 (435)
....++|||+|||+ .+|+++|+++|..||. |..+.+... +|||||+|.+.++|.+|+ .|++..|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~------------i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~ 98 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGD------------VQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLH 98 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTC------------EEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCS
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCC------------eEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 35678999999999 9999999999999997 555655544 699999999999999999 59999999
Q ss_pred CceEEEcCCCCCCcchhhcCCCCCCCCC------ccccccccccCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcC-C
Q 013837 248 GVAVRVRRPTDYNPTLAAALGPGQPSPN------LNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFG-T 320 (435)
Q Consensus 248 g~~l~v~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G-~ 320 (435)
|+.|.|.++................... .................+.++|||+|||..+|+++|+++|++|| .
T Consensus 99 g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~ 178 (229)
T 2adc_A 99 GKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGV 178 (229)
T ss_dssp SSBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCC
T ss_pred CeEEEEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCC
Confidence 9999999887543211110000000000 00000000000112234568999999999999999999999999 9
Q ss_pred eeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeC-CeEEEEEEccCC
Q 013837 321 LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMG-DKTLTVRRATAS 374 (435)
Q Consensus 321 v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~-g~~l~V~~a~~~ 374 (435)
|..|.|+.+ .+|||||+|.+.++|.+|+..|||..|. |+.|+|.|++++
T Consensus 179 i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 179 VKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp EEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred eeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 999998663 3689999999999999999999999999 999999999754
No 15
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.97 E-value=8.9e-30 Score=234.09 Aligned_cols=156 Identities=22% Similarity=0.362 Sum_probs=141.2
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCc
Q 013837 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGV 249 (435)
Q Consensus 171 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~ 249 (435)
....++|||+|||+.+|+++|+++|..||. |..+.+..++|||||+|.+.++|..|+ .++|..|.|+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~------------i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~ 86 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGE------------PSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILKSR 86 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCC------------CSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCC------------EEEEEEeCCCcEEEEEECCHHHHHHHHHHcCCcEECCc
Confidence 356789999999999999999999999997 555667788999999999999999999 5999999999
Q ss_pred eEEEcCCCCCCcchhhcCCCCCCCCCccccccccccCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeec
Q 013837 250 AVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKD 329 (435)
Q Consensus 250 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~ 329 (435)
.|.|.++.+ ..+|||+|||..+|+++|+++|+.||.|..|.|+.+
T Consensus 87 ~l~v~~a~~-----------------------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~ 131 (261)
T 3sde_A 87 PLRIRFATH-----------------------------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD 131 (261)
T ss_dssp ECEEEECCC-----------------------------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE
T ss_pred eeEeeeccc-----------------------------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC
Confidence 999998642 358999999999999999999999999999999999
Q ss_pred CCCCCcceEEEEEEcCHHHHHHHHHHh-CCceeC---CeEEEEEEccCC
Q 013837 330 RDTGNSKGYGFCVYQDPAVTDIACAAL-NGLKMG---DKTLTVRRATAS 374 (435)
Q Consensus 330 ~~tg~~~G~afV~f~~~~~A~~Al~~l-~g~~~~---g~~l~V~~a~~~ 374 (435)
.+|.++|||||+|.+.++|.+||..| +|..+. |++|.|.++...
T Consensus 132 -~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 132 -DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp -TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCE
T ss_pred -CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeecccc
Confidence 58999999999999999999999999 455554 999999998754
No 16
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=1.7e-29 Score=235.52 Aligned_cols=158 Identities=28% Similarity=0.407 Sum_probs=145.1
Q ss_pred hcccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecC
Q 013837 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEG 248 (435)
Q Consensus 170 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g 248 (435)
.....++|||+|||..+|+++|+++|..|| |..+.++.++|||||+|.+.++|..|+ .++|..|.|
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G-------------i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g 84 (284)
T 3smz_A 18 QFRNRRKILIRGLPGDVTNQEVHDLLSDYE-------------LKYCFVDKYKGTAFVTLLNGEQAEAAINAFHQSRLRE 84 (284)
T ss_dssp HHHCCCEEEEECCCTTCCHHHHHHHTTTSC-------------EEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHcC-------------CEEEEEecCCCEEEEEeCCHHHHHHHHHHcCCCeeCC
Confidence 345779999999999999999999999997 445566889999999999999999999 699999999
Q ss_pred ceEEEcCCCCCCcchhhcCCCCCCCCCccccccccccCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEee
Q 013837 249 VAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVK 328 (435)
Q Consensus 249 ~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~ 328 (435)
++|.|.++. ...+|||+|||..+|+++|+++|+.||.|..+.|+.
T Consensus 85 ~~i~v~~~~-----------------------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~ 129 (284)
T 3smz_A 85 RELSVQLQP-----------------------------------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVY 129 (284)
T ss_dssp EECEEEECC-----------------------------------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE
T ss_pred eEEEEEecC-----------------------------------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEe
Confidence 999998632 235899999999999999999999999999999999
Q ss_pred cCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEccCCC
Q 013837 329 DRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASS 375 (435)
Q Consensus 329 ~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~~~~ 375 (435)
++.+|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.++.++.
T Consensus 130 ~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~ 176 (284)
T 3smz_A 130 SERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQ 176 (284)
T ss_dssp CTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGG
T ss_pred eCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCC
Confidence 98899999999999999999999999999999999999999997654
No 17
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=6.6e-30 Score=239.28 Aligned_cols=172 Identities=15% Similarity=0.334 Sum_probs=140.8
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHHHH-HhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHH-hCCceecCce
Q 013837 173 HARRVYVGGLPPLANEQAIATFFSQVM-TAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMA-LDGIIFEGVA 250 (435)
Q Consensus 173 ~~~~l~V~nlp~~~t~~~l~~~f~~~G-~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~-l~~~~~~g~~ 250 (435)
..++|||+|||..+|+++|.++|..|| .|..+.+ + ....+.++|||||+|.+.++|..|+. |+|..|.|+.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i------~-~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 188 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRL------P-SLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYT 188 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEEC------C--------CCEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEE------E-eCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 578999999999999999999999999 7654321 1 11225678999999999999999995 9999999999
Q ss_pred EEEcCCCCCCcchhhcCCCCCCCCCccccccccccCCCCCCCCCCeEEEcCCCCC-CCHHHHHHHHHhcCCeeEEEEeec
Q 013837 251 VRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYY-FTETQIKELLESFGTLHGFDLVKD 329 (435)
Q Consensus 251 l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~-~te~~l~~~F~~~G~v~~v~i~~~ 329 (435)
|.|.++.+....... ........+|||+|||.. +|+++|+++|+.||.|..|.|+.+
T Consensus 189 l~v~~a~~~~~~~~~----------------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~ 246 (292)
T 2ghp_A 189 LVTKVSNPLEKSKRT----------------------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAG 246 (292)
T ss_dssp CEEEECCCC-------------------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSC
T ss_pred EEEEECCCCcccccc----------------------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEec
Confidence 999987654321110 012345679999999999 999999999999999999999998
Q ss_pred CC-CCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 013837 330 RD-TGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374 (435)
Q Consensus 330 ~~-tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~~~ 374 (435)
.. ||.++|||||+|.+.++|.+|+ .|||..|+|+.|.|.||.++
T Consensus 247 ~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 247 QKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp CC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred CCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 76 6999999999999999999999 99999999999999999775
No 18
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=3.1e-30 Score=240.53 Aligned_cols=172 Identities=17% Similarity=0.174 Sum_probs=145.8
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCce
Q 013837 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 250 (435)
Q Consensus 172 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~ 250 (435)
...++|||+|||+.+|+++|+++|..||.|..+. .+.+..++.++|||||+|.+.++|..|+ .|+|..+.|+.
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~------i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~ 166 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCF------LVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRT 166 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEE------EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEE------EEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 4567999999999999999999999999854310 0111123456899999999999999999 79999999999
Q ss_pred EEEcCCCCCCcchhhcCCCCCCCCCccccccccccCCCCCCCCCCeEEEcCCCCCC-CHHHHHHHHHhcCCeeEEEEeec
Q 013837 251 VRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYF-TETQIKELLESFGTLHGFDLVKD 329 (435)
Q Consensus 251 l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~-te~~l~~~F~~~G~v~~v~i~~~ 329 (435)
|.|.++..... .......++|||+|||..+ |+++|+++|+.||.|..|.|+.+
T Consensus 167 i~v~~a~~~~~--------------------------~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~ 220 (284)
T 3smz_A 167 LYVHWTDAGQL--------------------------TPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACG 220 (284)
T ss_dssp CEEEECCGGGC--------------------------CTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEEC
T ss_pred EEEEECCCCCC--------------------------CcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEEC
Confidence 99998754321 1112446789999999995 99999999999999999999998
Q ss_pred CCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEccCCCC
Q 013837 330 RDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSG 376 (435)
Q Consensus 330 ~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~~~~~ 376 (435)
. +|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.|+.++..
T Consensus 221 ~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 221 Q-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp S-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSC
T ss_pred C-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCc
Confidence 6 799999999999999999999999999999999999999977653
No 19
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.96 E-value=1.8e-29 Score=222.43 Aligned_cols=183 Identities=19% Similarity=0.211 Sum_probs=140.1
Q ss_pred CCeEEEcCCCC-CCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCC-CcEEEEEecCHHHHHHHH-HhCCceecCce
Q 013837 174 ARRVYVGGLPP-LANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHE-KKFAFVEMRTVEEASNAM-ALDGIIFEGVA 250 (435)
Q Consensus 174 ~~~l~V~nlp~-~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~-~g~afv~f~~~~~a~~a~-~l~~~~~~g~~ 250 (435)
.++|||+|||+ .+|+++|+++|..||.| ..+.+... +|||||+|.+.++|.+|+ .|+|..|.|+.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i------------~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~ 70 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDV------------QRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKP 70 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCC------------SEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCE------------EEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeE
Confidence 57999999999 99999999999999974 34444333 699999999999999999 59999999999
Q ss_pred EEEcCCCCCCcchhhcCCCCCCCCCcccccc-------ccccCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcC-Cee
Q 013837 251 VRVRRPTDYNPTLAAALGPGQPSPNLNLAAV-------GLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFG-TLH 322 (435)
Q Consensus 251 l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G-~v~ 322 (435)
|.|.++................. ....... ...........+.++|||+|||..+|+++|+++|+.|| .|.
T Consensus 71 l~v~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~ 149 (198)
T 1qm9_A 71 IRITLSKHQNVQLPREGQEDQGL-TKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVK 149 (198)
T ss_dssp CEEEECCCCSCCCSSSSSSSSSC-EEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCC
T ss_pred EEEEEecCCCcCCCCcCCccccc-cccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCce
Confidence 99998765432111100000000 0000000 00000111234578999999999999999999999999 999
Q ss_pred EEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeC-CeEEEEEEccCC
Q 013837 323 GFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMG-DKTLTVRRATAS 374 (435)
Q Consensus 323 ~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~-g~~l~V~~a~~~ 374 (435)
.|.|+.+ .+|||||+|.+.++|.+|+..|||..|+ |+.|+|.|++++
T Consensus 150 ~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 150 GFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp EEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred EEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 9998764 2789999999999999999999999999 999999999754
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.96 E-value=3.9e-29 Score=233.99 Aligned_cols=157 Identities=20% Similarity=0.280 Sum_probs=132.9
Q ss_pred hcccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe----cCCCcEEEEEecCHHHHHHHHHhCCce
Q 013837 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI----NHEKKFAFVEMRTVEEASNAMALDGII 245 (435)
Q Consensus 170 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~----~~~~g~afv~f~~~~~a~~a~~l~~~~ 245 (435)
.....++|||+|||+.+|+++|+++|..||.|. .+.+ ..++|||||+|.+.++|.+|+++++..
T Consensus 37 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~------------~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~ 104 (292)
T 2ghp_A 37 RNRELTTVLVKNLPKSYNQNKVYKYFKHCGPII------------HVDVADSLKKNFRFARIEFARYDGALAAITKTHKV 104 (292)
T ss_dssp -----CEEEEEEECTTCCHHHHHHHHGGGSCEE------------EEEEEECTTSSSEEEEEEESSHHHHHHHHTTTTCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE------------EEEEEECCCCCcEEEEEEECCHHHHHHHHHhCCcE
Confidence 456789999999999999999999999999753 3333 225899999999999999999999999
Q ss_pred ecCceEEEcCCCCCCcchhhcCCCCCCCCCccccccccccCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcC-CeeEE
Q 013837 246 FEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFG-TLHGF 324 (435)
Q Consensus 246 ~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G-~v~~v 324 (435)
|.|+.|.|.++. .++|||+|||..+|+++|.++|+.|| .|..|
T Consensus 105 ~~g~~i~v~~~~------------------------------------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v 148 (292)
T 2ghp_A 105 VGQNEIIVSHLT------------------------------------ECTLWMTNFPPSYTQRNIRDLLQDINVVALSI 148 (292)
T ss_dssp ETTEECEEEECC------------------------------------SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEE
T ss_pred eCCcEEEEEECC------------------------------------CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEE
Confidence 999999998642 46899999999999999999999999 99999
Q ss_pred EEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEccCCC
Q 013837 325 DLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASS 375 (435)
Q Consensus 325 ~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~~~~ 375 (435)
.|+.++. |.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.+..
T Consensus 149 ~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 198 (292)
T 2ghp_A 149 RLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLE 198 (292)
T ss_dssp ECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC-
T ss_pred EEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCc
Confidence 9999865 8899999999999999999999999999999999999997654
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.91 E-value=1.5e-23 Score=177.54 Aligned_cols=142 Identities=18% Similarity=0.186 Sum_probs=108.0
Q ss_pred cCCCcEEEEEecCHHHHHHHH-HhCCceecCceEEEcCCCCCCcchhhcCCCCCCCCCccccccccccCCCCCCCCCCeE
Q 013837 219 NHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRV 297 (435)
Q Consensus 219 ~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 297 (435)
...+|||||+|.+.++|.+|+ .+++....+..+.+........... . ..............+|
T Consensus 10 ~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~---~-------------~~~~~~~~~~~~~~~l 73 (158)
T 2kn4_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTE---G-------------SHHHHHHMDVEGMTSL 73 (158)
T ss_dssp SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEEC---C-------------CCCSSCCCCCCBCCEE
T ss_pred ccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccc---c-------------ccccccccCCCCCCEE
Confidence 357899999999999999999 5665333222222221111000000 0 0000011223446799
Q ss_pred EEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEccCCCC
Q 013837 298 FVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSG 376 (435)
Q Consensus 298 ~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~~~~~ 376 (435)
||+|||..+|+++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|||..|.|+.|.|.||.++..
T Consensus 74 ~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 74 KVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 152 (158)
T ss_dssp EEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSC
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 9999999999999999999999999999999988999999999999999999999999999999999999999987643
No 22
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.87 E-value=6.2e-22 Score=152.96 Aligned_cols=81 Identities=31% Similarity=0.532 Sum_probs=78.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 013837 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (435)
Q Consensus 293 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~ 372 (435)
..++|||+|||..+|+++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+||+.|||..|.|+.|+|.||+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred C
Q 013837 373 A 373 (435)
Q Consensus 373 ~ 373 (435)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 5
No 23
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.87 E-value=2.6e-22 Score=168.17 Aligned_cols=136 Identities=15% Similarity=0.159 Sum_probs=110.6
Q ss_pred CCCcEEEEEecCHHHHHHHH-Hh-CCceecCceEEEcCCCCCCcchhhcCCCCCCCCCccccccccccCCCCCCCCCCeE
Q 013837 220 HEKKFAFVEMRTVEEASNAM-AL-DGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRV 297 (435)
Q Consensus 220 ~~~g~afv~f~~~~~a~~a~-~l-~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 297 (435)
.-+|+++|+|.+.++|.+|+ ++ ||..+.| .|.+.++............. ............++|
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~l 76 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHH-------------HHHMHRDSCPLDCKV 76 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSC-------------CCCSCSSSSTTSCEE
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccc-------------cccccccCCCCCCEE
Confidence 45799999999999999999 68 9999999 99999775432111000000 000112233556899
Q ss_pred EEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 013837 298 FVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374 (435)
Q Consensus 298 ~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~~~ 374 (435)
||+|||+.+|+++|+++|+.||.|..|.|+.+ ++|||||+|.+.++|.+||..|||..|+|+.|.|.|+.++
T Consensus 77 ~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 77 YVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp EEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred EEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 99999999999999999999999999999886 5899999999999999999999999999999999999765
No 24
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.85 E-value=1.3e-21 Score=148.74 Aligned_cols=82 Identities=20% Similarity=0.328 Sum_probs=77.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcC-CeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHh-CCceeCCeEEEEEEcc
Q 013837 295 DRVFVGGLPYYFTETQIKELLESFG-TLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL-NGLKMGDKTLTVRRAT 372 (435)
Q Consensus 295 ~~l~V~nLp~~~te~~l~~~F~~~G-~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l-~g~~~~g~~l~V~~a~ 372 (435)
++|||+|||..+|+++|+++|++|| .|..|.|++++.||.++|||||+|.+.++|.+||+.| |+..|.|+.|.|.||.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 6899999999999999999999999 7999999999999999999999999999999999987 5678999999999998
Q ss_pred CCCC
Q 013837 373 ASSG 376 (435)
Q Consensus 373 ~~~~ 376 (435)
+++.
T Consensus 82 ~~~~ 85 (91)
T 2lxi_A 82 PKPK 85 (91)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7754
No 25
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.84 E-value=1.2e-20 Score=148.49 Aligned_cols=83 Identities=11% Similarity=0.123 Sum_probs=78.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 013837 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a 371 (435)
.+.++|||+|||+.+|+++|+++|++||.|..|.|+.++.||.++|||||+|.+.++|.+||+.|||..|.|+.|+|.+|
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 013837 372 TAS 374 (435)
Q Consensus 372 ~~~ 374 (435)
..+
T Consensus 84 ~~~ 86 (110)
T 3s8s_A 84 IKG 86 (110)
T ss_dssp STT
T ss_pred CCC
Confidence 533
No 26
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.83 E-value=8.7e-21 Score=144.76 Aligned_cols=82 Identities=20% Similarity=0.320 Sum_probs=76.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCC--eeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCc----eeCCeE
Q 013837 292 EGPDRVFVGGLPYYFTETQIKELLESFGT--LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGL----KMGDKT 365 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~--v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~----~~~g~~ 365 (435)
..-.+|||+|||+.+|+++|+++|++||. |..|.|++|+.||.++|||||+|.+.++|.+||+.|||. .|+|+.
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 44579999999999999999999999995 678999999999999999999999999999999999986 589999
Q ss_pred EEEEEccC
Q 013837 366 LTVRRATA 373 (435)
Q Consensus 366 l~V~~a~~ 373 (435)
|.|.||+.
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999964
No 27
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.82 E-value=5.9e-20 Score=138.67 Aligned_cols=82 Identities=30% Similarity=0.455 Sum_probs=76.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 013837 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (435)
Q Consensus 293 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~ 372 (435)
+.++|||+|||..+|+++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+|+..|||..|.|+.|+|.||.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 45689999999999999999999999999999999998899999999999999999999999999999999999999997
Q ss_pred CC
Q 013837 373 AS 374 (435)
Q Consensus 373 ~~ 374 (435)
++
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 65
No 28
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.82 E-value=8.9e-20 Score=136.38 Aligned_cols=81 Identities=21% Similarity=0.404 Sum_probs=77.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 013837 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374 (435)
Q Consensus 295 ~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~~~ 374 (435)
.+|||+|||..+|+++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.||.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 58999999999999999999999999999999999889999999999999999999999999999999999999999765
Q ss_pred C
Q 013837 375 S 375 (435)
Q Consensus 375 ~ 375 (435)
.
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 3
No 29
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.82 E-value=9.6e-21 Score=155.10 Aligned_cols=124 Identities=19% Similarity=0.280 Sum_probs=81.8
Q ss_pred cEEEEEecCHHHHHHHH-HhCCceecCceEEEcCCCCCCcchhhcCCCCCCCCCccccccccccCCCCCCCCCCeEEEcC
Q 013837 223 KFAFVEMRTVEEASNAM-ALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGG 301 (435)
Q Consensus 223 g~afv~f~~~~~a~~a~-~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~n 301 (435)
-++|++|.+...|..|| .++|....|.. .+.+.. ........++|||+|
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~-~~~~~~-----------------------------~~~~~~~~~~l~V~n 54 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRG-SMSYGR-----------------------------PPPDVEGMTSLKVDN 54 (135)
T ss_dssp -------------------------------CCSCC-----------------------------SCSSGGGCCCEEEEC
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCC-CCCcCC-----------------------------CCCCCCCCCEEEEeC
Confidence 46788888999999999 58776655543 111111 111223457899999
Q ss_pred CCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEccCCCC
Q 013837 302 LPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSG 376 (435)
Q Consensus 302 Lp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~~~~~ 376 (435)
||..+|+++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||..|||..|.|+.|+|.|++.+..
T Consensus 55 Lp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~ 129 (135)
T 2lea_A 55 LTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 129 (135)
T ss_dssp CCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCC
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 999999999999999999999999999988999999999999999999999999999999999999999987654
No 30
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.82 E-value=1.9e-19 Score=143.55 Aligned_cols=88 Identities=30% Similarity=0.437 Sum_probs=82.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 013837 290 GAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVR 369 (435)
Q Consensus 290 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~ 369 (435)
.....++|||+|||..+|+++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||+.|||..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34566799999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EccCCCCC
Q 013837 370 RATASSGQ 377 (435)
Q Consensus 370 ~a~~~~~~ 377 (435)
|+..+...
T Consensus 91 ~a~~~~~~ 98 (115)
T 2dgo_A 91 WATRKPPA 98 (115)
T ss_dssp ESSCCCCC
T ss_pred EccCCCCC
Confidence 99877543
No 31
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.3e-19 Score=139.15 Aligned_cols=84 Identities=20% Similarity=0.415 Sum_probs=79.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 013837 290 GAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVR 369 (435)
Q Consensus 290 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~ 369 (435)
...+.++|||+|||..+|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34556799999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred EccC
Q 013837 370 RATA 373 (435)
Q Consensus 370 ~a~~ 373 (435)
||+.
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9864
No 32
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.1e-19 Score=141.91 Aligned_cols=87 Identities=29% Similarity=0.427 Sum_probs=81.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 013837 290 GAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVR 369 (435)
Q Consensus 290 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~ 369 (435)
.....++|||+|||..+|+++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|||..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EccCCCC
Q 013837 370 RATASSG 376 (435)
Q Consensus 370 ~a~~~~~ 376 (435)
|+.++..
T Consensus 91 ~a~~~~~ 97 (103)
T 2cq0_A 91 WAKPSTN 97 (103)
T ss_dssp ESSCCCC
T ss_pred ECCCCCC
Confidence 9987653
No 33
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.3e-19 Score=140.35 Aligned_cols=85 Identities=26% Similarity=0.431 Sum_probs=80.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 013837 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a 371 (435)
...++|||+|||..+|+++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|||..|.|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45679999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 013837 372 TASSG 376 (435)
Q Consensus 372 ~~~~~ 376 (435)
.++..
T Consensus 86 ~~~~~ 90 (99)
T 1whw_A 86 TIKKE 90 (99)
T ss_dssp CCCST
T ss_pred CCCcc
Confidence 87754
No 34
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.81 E-value=1.1e-19 Score=139.82 Aligned_cols=82 Identities=32% Similarity=0.551 Sum_probs=78.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 013837 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (435)
Q Consensus 294 ~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~~ 373 (435)
.++|||+|||..+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+|++.|||..|+|+.|.|.||.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 57999999999999999999999999999999999988999999999999999999999999999999999999999987
Q ss_pred CC
Q 013837 374 SS 375 (435)
Q Consensus 374 ~~ 375 (435)
+.
T Consensus 82 ~~ 83 (96)
T 2x1f_A 82 SD 83 (96)
T ss_dssp SS
T ss_pred CC
Confidence 65
No 35
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1e-19 Score=141.73 Aligned_cols=87 Identities=29% Similarity=0.540 Sum_probs=81.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 013837 290 GAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVR 369 (435)
Q Consensus 290 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~ 369 (435)
.....++|||+|||..+|+++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||+.|||..|.|+.|+|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EccCCCC
Q 013837 370 RATASSG 376 (435)
Q Consensus 370 ~a~~~~~ 376 (435)
|+.++..
T Consensus 88 ~a~~~~~ 94 (102)
T 1x5s_A 88 QAGKSSD 94 (102)
T ss_dssp EEECCCC
T ss_pred ECCCCCC
Confidence 9987654
No 36
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=8.5e-20 Score=142.23 Aligned_cols=86 Identities=19% Similarity=0.303 Sum_probs=81.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013837 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (435)
Q Consensus 291 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~ 370 (435)
....++|||+|||..+|+++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||+.|||..|.|+.|.|.|
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 45678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 013837 371 ATASSG 376 (435)
Q Consensus 371 a~~~~~ 376 (435)
+.++..
T Consensus 89 a~~~~~ 94 (102)
T 2cqb_A 89 AKPMRI 94 (102)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 987754
No 37
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.81 E-value=1.1e-19 Score=136.54 Aligned_cols=81 Identities=19% Similarity=0.336 Sum_probs=77.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 013837 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a 371 (435)
.+.++|||+|||..+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+|++.|||..|.|+.|+|.||
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45689999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred c
Q 013837 372 T 372 (435)
Q Consensus 372 ~ 372 (435)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 38
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.3e-19 Score=139.20 Aligned_cols=85 Identities=33% Similarity=0.644 Sum_probs=80.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 013837 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a 371 (435)
.+.++|||+|||..+|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..|||..|.|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 35679999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 013837 372 TASSG 376 (435)
Q Consensus 372 ~~~~~ 376 (435)
.++..
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 87653
No 39
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=9.2e-20 Score=142.28 Aligned_cols=86 Identities=20% Similarity=0.374 Sum_probs=81.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013837 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (435)
Q Consensus 291 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~ 370 (435)
....++|||+|||..+|+++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||..|||..|.|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 45578999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 013837 371 ATASSG 376 (435)
Q Consensus 371 a~~~~~ 376 (435)
|+....
T Consensus 90 a~~~~~ 95 (103)
T 2dnm_A 90 ARYGRR 95 (103)
T ss_dssp CSSCCS
T ss_pred CCcCCC
Confidence 987643
No 40
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.3e-19 Score=138.85 Aligned_cols=82 Identities=23% Similarity=0.448 Sum_probs=78.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013837 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (435)
Q Consensus 291 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~ 370 (435)
....++|||+|||..+|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|++.|||..|.|+.|+|.|
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 45567999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cc
Q 013837 371 AT 372 (435)
Q Consensus 371 a~ 372 (435)
|+
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 84
No 41
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.6e-19 Score=141.53 Aligned_cols=88 Identities=28% Similarity=0.425 Sum_probs=82.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q 013837 289 GGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 368 (435)
Q Consensus 289 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V 368 (435)
......++|||+|||..+|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..|||..|.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 33456789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEccCCCC
Q 013837 369 RRATASSG 376 (435)
Q Consensus 369 ~~a~~~~~ 376 (435)
.++.++..
T Consensus 90 ~~a~~~~~ 97 (105)
T 1x5u_A 90 NKASAHNK 97 (105)
T ss_dssp EETTTTSC
T ss_pred EECCCCCc
Confidence 99987653
No 42
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.81 E-value=2e-19 Score=143.30 Aligned_cols=86 Identities=24% Similarity=0.476 Sum_probs=80.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013837 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (435)
Q Consensus 291 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~ 370 (435)
....++|||+|||..+|+++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||+.|||..|.|+.|+|.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34567999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 013837 371 ATASSG 376 (435)
Q Consensus 371 a~~~~~ 376 (435)
+.++..
T Consensus 102 a~~~~~ 107 (115)
T 2cpz_A 102 KRSKND 107 (115)
T ss_dssp CCCSCC
T ss_pred cCCCCc
Confidence 987653
No 43
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.8e-19 Score=139.55 Aligned_cols=85 Identities=25% Similarity=0.533 Sum_probs=80.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013837 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (435)
Q Consensus 291 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~ 370 (435)
....++|||+|||..+|+++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||+ |||..|.|+.|.|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 3556899999999999999999999999999999999999899999999999999999999999 999999999999999
Q ss_pred ccCCCC
Q 013837 371 ATASSG 376 (435)
Q Consensus 371 a~~~~~ 376 (435)
+.++..
T Consensus 86 a~~~~~ 91 (99)
T 2dgs_A 86 AEPRDS 91 (99)
T ss_dssp CCCCCC
T ss_pred CCCCcc
Confidence 987754
No 44
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.81 E-value=1.6e-19 Score=143.64 Aligned_cols=81 Identities=23% Similarity=0.494 Sum_probs=75.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 013837 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (435)
Q Consensus 293 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~ 372 (435)
...+|||+|||..+|+++|+++|+.||.|..|.|+.++ +.++|||||+|.+.++|.+||+.|||..|.|+.|.|.++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 34689999999999999999999999999999999985 4589999999999999999999999999999999999997
Q ss_pred CCC
Q 013837 373 ASS 375 (435)
Q Consensus 373 ~~~ 375 (435)
++.
T Consensus 82 ~~~ 84 (115)
T 4f25_A 82 SRK 84 (115)
T ss_dssp CCC
T ss_pred Ccc
Confidence 654
No 45
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.5e-19 Score=140.08 Aligned_cols=85 Identities=24% Similarity=0.393 Sum_probs=80.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCee-EEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeE----
Q 013837 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLH-GFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKT---- 365 (435)
Q Consensus 291 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~-~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~---- 365 (435)
....++|||+|||..+|+++|+++|++||.|. .|.|+.++.+|.++|||||+|.+.++|.+|+..|||..|.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 45678999999999999999999999999999 9999999989999999999999999999999999999999999
Q ss_pred EEEEEccCCC
Q 013837 366 LTVRRATASS 375 (435)
Q Consensus 366 l~V~~a~~~~ 375 (435)
|+|.||++..
T Consensus 86 l~v~~a~~~~ 95 (99)
T 2div_A 86 FKLNYATYSG 95 (99)
T ss_dssp CCEEETTCCS
T ss_pred EEEeecCCCC
Confidence 9999997653
No 46
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.2e-19 Score=139.81 Aligned_cols=85 Identities=29% Similarity=0.513 Sum_probs=80.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEE-EEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013837 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGF-DLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v-~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~ 370 (435)
.+.++|||+|||..+|+++|+++|+.||.|..| .|+.++.+|.++|||||+|.+.++|.+||..|||..|.|+.|+|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 346799999999999999999999999999999 9999988999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 013837 371 ATASSG 376 (435)
Q Consensus 371 a~~~~~ 376 (435)
+.++..
T Consensus 83 a~~~~~ 88 (96)
T 1x5t_A 83 AFKKDS 88 (96)
T ss_dssp SCCCCC
T ss_pred ecccCC
Confidence 987653
No 47
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.81 E-value=2.8e-20 Score=141.34 Aligned_cols=81 Identities=17% Similarity=0.339 Sum_probs=73.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcC--CeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 013837 295 DRVFVGGLPYYFTETQIKELLESFG--TLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (435)
Q Consensus 295 ~~l~V~nLp~~~te~~l~~~F~~~G--~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~ 372 (435)
.+|||+|||..+|+++|+++|++|| .|..|.|+.++.+|.++|||||+|.+.++|.+||+.|||..|.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 3799999999999999999999999 99999999999999999999999999999999999999999999999999997
Q ss_pred CCC
Q 013837 373 ASS 375 (435)
Q Consensus 373 ~~~ 375 (435)
+..
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 664
No 48
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=3.5e-19 Score=138.13 Aligned_cols=84 Identities=21% Similarity=0.540 Sum_probs=79.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013837 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (435)
Q Consensus 291 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~ 370 (435)
....++|||+|||..+|+++|+++|+.||.|..|.|+.++ +|.++|||||+|.+.++|.+||+.|||..|.|+.|+|.|
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456789999999999999999999999999999999997 899999999999999999999999999999999999999
Q ss_pred ccCCC
Q 013837 371 ATASS 375 (435)
Q Consensus 371 a~~~~ 375 (435)
+.++.
T Consensus 93 a~~~~ 97 (100)
T 2do4_A 93 SNSGP 97 (100)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 98764
No 49
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.81 E-value=1.9e-19 Score=153.06 Aligned_cols=141 Identities=21% Similarity=0.174 Sum_probs=80.6
Q ss_pred EEecCHHHHHHHH-HhCCceec--CceEEEcCCCCCCcchhhcCCCCCCCCCccccccccccCCCCCCCCCCeEEEcCCC
Q 013837 227 VEMRTVEEASNAM-ALDGIIFE--GVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLP 303 (435)
Q Consensus 227 v~f~~~~~a~~a~-~l~~~~~~--g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp 303 (435)
.+|.+.++|..|+ .+++.... |+.+.+.+....... ...+..+. ...............++|||+|||
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~------~~~~~~~s---~~~~~~~~~~~~~~~~~l~V~nLp 81 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIH------SYERVRNE---DDDELEPGPQRSVEGWILFVTSIH 81 (165)
T ss_dssp ----------------------------------------------------------------CCCCC-CEEEEEESCC
T ss_pred hhhhccccccccchhhccccccccCCCCCCCcccccccc------CccccccC---CCCCCCCCCCCCCCCCEEEEeCCC
Confidence 7899999999999 57776554 555554432111000 00000000 000000011223446789999999
Q ss_pred CCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEccCCCC
Q 013837 304 YYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASSG 376 (435)
Q Consensus 304 ~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~~~~~ 376 (435)
..+|+++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|||..|.|+.|.|.||..+..
T Consensus 82 ~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 154 (165)
T 1rk8_A 82 EEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGP 154 (165)
T ss_dssp TTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC-
T ss_pred CCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCC
Confidence 9999999999999999999999999988999999999999999999999999999999999999999987754
No 50
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.80 E-value=1.9e-19 Score=141.25 Aligned_cols=87 Identities=29% Similarity=0.453 Sum_probs=80.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCcee---CCeEE
Q 013837 290 GAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKM---GDKTL 366 (435)
Q Consensus 290 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~---~g~~l 366 (435)
.....++|||+|||..+|+++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+||+.|||..+ .|+.|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 345567999999999999999999999999999999999998999999999999999999999999999988 89999
Q ss_pred EEEEccCCCC
Q 013837 367 TVRRATASSG 376 (435)
Q Consensus 367 ~V~~a~~~~~ 376 (435)
.|.|+..+..
T Consensus 89 ~v~~a~~~~~ 98 (106)
T 2dgp_A 89 QVKPADSESR 98 (106)
T ss_dssp EEEECCCCSC
T ss_pred EEEECCcccc
Confidence 9999987654
No 51
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=2.1e-19 Score=138.84 Aligned_cols=85 Identities=24% Similarity=0.448 Sum_probs=79.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCC---CCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q 013837 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRD---TGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 368 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~---tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V 368 (435)
.+.++|||+|||..+|+++|+++|+.||.|..|.|+.++. |+.++|||||+|.+.++|.+||..|||..|.|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4567999999999999999999999999999999999876 6689999999999999999999999999999999999
Q ss_pred EEccCCCC
Q 013837 369 RRATASSG 376 (435)
Q Consensus 369 ~~a~~~~~ 376 (435)
.++..+..
T Consensus 83 ~~a~~~~~ 90 (98)
T 2cpf_A 83 RISERATK 90 (98)
T ss_dssp ECSSCSSC
T ss_pred EEccCCCC
Confidence 99987653
No 52
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=3.3e-19 Score=141.15 Aligned_cols=88 Identities=27% Similarity=0.406 Sum_probs=82.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhC------CceeCC
Q 013837 290 GAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALN------GLKMGD 363 (435)
Q Consensus 290 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~------g~~~~g 363 (435)
...+.++|||+|||..+|+++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|| |..|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 34567899999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred eEEEEEEccCCCCC
Q 013837 364 KTLTVRRATASSGQ 377 (435)
Q Consensus 364 ~~l~V~~a~~~~~~ 377 (435)
+.|.|.|+.++...
T Consensus 91 ~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 91 RQLKVDLAVTRDEA 104 (111)
T ss_dssp CEEEEECCCCCCCC
T ss_pred EEEEEEECCCCccC
Confidence 99999999877543
No 53
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.5e-19 Score=140.65 Aligned_cols=84 Identities=25% Similarity=0.344 Sum_probs=79.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 013837 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a 371 (435)
...++|||+|||..+|+++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.||
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 013837 372 TASS 375 (435)
Q Consensus 372 ~~~~ 375 (435)
.++.
T Consensus 101 ~~~~ 104 (106)
T 1p27_B 101 FVRG 104 (106)
T ss_dssp EESS
T ss_pred cCCC
Confidence 7764
No 54
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.80 E-value=3.2e-19 Score=138.07 Aligned_cols=82 Identities=24% Similarity=0.418 Sum_probs=78.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeE--------EEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeC
Q 013837 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHG--------FDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMG 362 (435)
Q Consensus 291 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~--------v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~ 362 (435)
....++|||+|||..+|+++|+++|++||.|.. |.|+.++.+|.++|||||+|.+.++|.+|++.|||..|.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 355689999999999999999999999999999 999999989999999999999999999999999999999
Q ss_pred CeEEEEEEcc
Q 013837 363 DKTLTVRRAT 372 (435)
Q Consensus 363 g~~l~V~~a~ 372 (435)
|+.|+|.+|+
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999984
No 55
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.80 E-value=2.5e-19 Score=140.80 Aligned_cols=84 Identities=33% Similarity=0.693 Sum_probs=79.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013837 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (435)
Q Consensus 291 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~ 370 (435)
....++|||+|||..+|+++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+|++.|||..|.|+.|+|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 45567999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccCC
Q 013837 371 ATAS 374 (435)
Q Consensus 371 a~~~ 374 (435)
++++
T Consensus 103 a~~k 106 (108)
T 2jrs_A 103 VTER 106 (108)
T ss_dssp SCSS
T ss_pred cccC
Confidence 9765
No 56
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=4.1e-19 Score=139.66 Aligned_cols=86 Identities=23% Similarity=0.449 Sum_probs=80.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeec-CCCCCcceEEEEEEcCHHHHHHHHHHh-CCceeCCeEEEE
Q 013837 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKD-RDTGNSKGYGFCVYQDPAVTDIACAAL-NGLKMGDKTLTV 368 (435)
Q Consensus 291 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~-~~tg~~~G~afV~f~~~~~A~~Al~~l-~g~~~~g~~l~V 368 (435)
....++|||+|||..+|+++|+++|+.||.|..|.|+.+ +.+|.++|||||+|.+.++|.+||..| ||..|.|+.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 355689999999999999999999999999999999998 778999999999999999999999999 999999999999
Q ss_pred EEccCCCC
Q 013837 369 RRATASSG 376 (435)
Q Consensus 369 ~~a~~~~~ 376 (435)
.|+.++..
T Consensus 92 ~~a~~~~~ 99 (107)
T 2cph_A 92 EWADSEVT 99 (107)
T ss_dssp EECCCCCC
T ss_pred EeCCCCCC
Confidence 99987654
No 57
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.80 E-value=5.2e-19 Score=137.94 Aligned_cols=84 Identities=25% Similarity=0.504 Sum_probs=78.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013837 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (435)
Q Consensus 291 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~ 370 (435)
..+.++|||+|||..+|+++|+++|+.|| |..|.|+.++.+|.++|||||+|.+.++|.+|| .|||..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 45568999999999999999999999997 999999999989999999999999999999999 8999999999999999
Q ss_pred ccCCCC
Q 013837 371 ATASSG 376 (435)
Q Consensus 371 a~~~~~ 376 (435)
+.++..
T Consensus 90 a~~~~~ 95 (103)
T 2dng_A 90 AEGRKQ 95 (103)
T ss_dssp CCCCCC
T ss_pred ecCCCC
Confidence 987653
No 58
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.80 E-value=6e-20 Score=142.31 Aligned_cols=80 Identities=16% Similarity=0.268 Sum_probs=76.9
Q ss_pred CCeEEEcCCCC------CCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCC-eEE
Q 013837 294 PDRVFVGGLPY------YFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGD-KTL 366 (435)
Q Consensus 294 ~~~l~V~nLp~------~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g-~~l 366 (435)
.++|||+|||. .+++++|+++|++||.|..|.|+.++.||.++|||||+|.+.++|.+||+.|||..|.| +.|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 46899999999 99999999999999999999999999999999999999999999999999999999999 999
Q ss_pred EEEEccC
Q 013837 367 TVRRATA 373 (435)
Q Consensus 367 ~V~~a~~ 373 (435)
.|.+|.+
T Consensus 86 ~V~~a~~ 92 (100)
T 3ns6_A 86 FLYTMKD 92 (100)
T ss_dssp EEEESHH
T ss_pred EEEECch
Confidence 9999954
No 59
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.79 E-value=3.8e-19 Score=141.62 Aligned_cols=83 Identities=30% Similarity=0.572 Sum_probs=78.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 013837 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a 371 (435)
...++|||+|||..+|+++|+++|++||.|..|.|+.++ +|.++|||||+|.+.++|.+||+.|||..|.|+.|+|.++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 456799999999999999999999999999999999997 8999999999999999999999999999999999999999
Q ss_pred cCCC
Q 013837 372 TASS 375 (435)
Q Consensus 372 ~~~~ 375 (435)
++..
T Consensus 84 ~~~~ 87 (116)
T 2fy1_A 84 KKPS 87 (116)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 7664
No 60
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.79 E-value=4.6e-19 Score=136.13 Aligned_cols=82 Identities=30% Similarity=0.544 Sum_probs=77.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013837 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (435)
Q Consensus 291 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~ 370 (435)
....++|||+|||..+++++|+++|++||.|..|.|+.++. |.++|||||+|.+.++|.+|+..|||..|.|+.|+|.|
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 34567999999999999999999999999999999999975 99999999999999999999999999999999999999
Q ss_pred ccC
Q 013837 371 ATA 373 (435)
Q Consensus 371 a~~ 373 (435)
|+.
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 864
No 61
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=5e-19 Score=138.08 Aligned_cols=85 Identities=22% Similarity=0.390 Sum_probs=79.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 013837 290 GAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVR 369 (435)
Q Consensus 290 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~ 369 (435)
.....++|||+|||..+|+++|+++|+.||.|..|.|+.+ +|.++|||||+|.+.++|.+||..|||..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 88 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 3456789999999999999999999999999999999998 79999999999999999999999999999999999999
Q ss_pred EccCCCC
Q 013837 370 RATASSG 376 (435)
Q Consensus 370 ~a~~~~~ 376 (435)
|+.++..
T Consensus 89 ~a~~~~~ 95 (103)
T 2d9p_A 89 LAQRKEE 95 (103)
T ss_dssp ECSSCCC
T ss_pred Eeccccc
Confidence 9987654
No 62
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.79 E-value=4.1e-19 Score=140.33 Aligned_cols=84 Identities=27% Similarity=0.328 Sum_probs=79.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 013837 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a 371 (435)
...++|||+|||..+|+++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|||..|.|+.|.|.|+
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 44578999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cCCC
Q 013837 372 TASS 375 (435)
Q Consensus 372 ~~~~ 375 (435)
.++.
T Consensus 104 ~~~~ 107 (110)
T 1oo0_B 104 FVKG 107 (110)
T ss_dssp EESS
T ss_pred ccCC
Confidence 8764
No 63
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.79 E-value=8.4e-19 Score=137.34 Aligned_cols=84 Identities=24% Similarity=0.388 Sum_probs=79.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCC---eEEEE
Q 013837 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGD---KTLTV 368 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g---~~l~V 368 (435)
...++|||+|||..+|+++|+++|+.||.|..|.|+.++ +|.++|||||+|.+.++|.+||+.|||..|.| +.|.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 456899999999999999999999999999999999997 79999999999999999999999999999988 99999
Q ss_pred EEccCCCC
Q 013837 369 RRATASSG 376 (435)
Q Consensus 369 ~~a~~~~~ 376 (435)
.||..+..
T Consensus 92 ~~a~~~~~ 99 (105)
T 2dnh_A 92 KFADTDKE 99 (105)
T ss_dssp EESCSSCC
T ss_pred EECccCcc
Confidence 99987653
No 64
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.7e-19 Score=137.74 Aligned_cols=82 Identities=12% Similarity=0.166 Sum_probs=73.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhC--CceeCCeEEEE
Q 013837 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALN--GLKMGDKTLTV 368 (435)
Q Consensus 291 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~--g~~~~g~~l~V 368 (435)
..+.++|||+|||+.+|+++|+++|++||.|..|.|+++ +|||||+|.+.++|.+|++.|+ |..|.|++|.|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 345679999999999999999999999999999999875 6899999999999999999886 47899999999
Q ss_pred EEccCCCCCC
Q 013837 369 RRATASSGQS 378 (435)
Q Consensus 369 ~~a~~~~~~~ 378 (435)
.||+.+....
T Consensus 87 ~~A~~~~~~~ 96 (105)
T 1sjq_A 87 QFSNHKELKT 96 (105)
T ss_dssp CCCSSSSCCC
T ss_pred EEcCCCCCCc
Confidence 9998876443
No 65
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.79 E-value=2.3e-19 Score=145.56 Aligned_cols=87 Identities=20% Similarity=0.386 Sum_probs=81.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q 013837 289 GGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 368 (435)
Q Consensus 289 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V 368 (435)
....+.++|||+|||..+|+++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|||..|.|+.|.|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34456789999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred EEccCCC
Q 013837 369 RRATASS 375 (435)
Q Consensus 369 ~~a~~~~ 375 (435)
.|+.++.
T Consensus 121 ~~a~~~~ 127 (129)
T 2kxn_B 121 DFSITKR 127 (129)
T ss_dssp SCCSSSS
T ss_pred EEecCCC
Confidence 9997764
No 66
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.4e-18 Score=135.50 Aligned_cols=86 Identities=27% Similarity=0.397 Sum_probs=78.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 013837 290 GAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVR 369 (435)
Q Consensus 290 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~ 369 (435)
.....++|||+|||..+|+++|+++|++||.|..|.|+.++. .++|||||+|.+.++|.+||..|||..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 345678999999999999999999999999999999999854 368999999999999999999999999999999999
Q ss_pred EccCCCCC
Q 013837 370 RATASSGQ 377 (435)
Q Consensus 370 ~a~~~~~~ 377 (435)
|+..+...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2cqi_A 89 WATTPSSQ 96 (103)
T ss_dssp ECCCTTCC
T ss_pred ECCCCccc
Confidence 99876543
No 67
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.79 E-value=7.8e-19 Score=138.01 Aligned_cols=81 Identities=25% Similarity=0.393 Sum_probs=77.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013837 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (435)
Q Consensus 291 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~ 370 (435)
..+.++|||+|||..+|+++|+++|++||.|..|.|+.++ +|.++|||||+|.+.++|.+||+.|||..|.|+.|+|.|
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 4556799999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred cc
Q 013837 371 AT 372 (435)
Q Consensus 371 a~ 372 (435)
|+
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 85
No 68
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.79 E-value=4.6e-19 Score=135.04 Aligned_cols=79 Identities=16% Similarity=0.160 Sum_probs=71.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCce--eCCeEEEE
Q 013837 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLK--MGDKTLTV 368 (435)
Q Consensus 291 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~--~~g~~l~V 368 (435)
..+.++|||+|||+.+|+++|.++|++||.|..|.|++. +|||||+|++.++|.+|++.|+|.. |.|+.|.|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 456789999999999999999999999999999998753 6899999999999999999999875 78999999
Q ss_pred EEccCCC
Q 013837 369 RRATASS 375 (435)
Q Consensus 369 ~~a~~~~ 375 (435)
+||+.+.
T Consensus 92 ~~S~~k~ 98 (100)
T 3r27_A 92 NYSTSQK 98 (100)
T ss_dssp EECSCSC
T ss_pred Eeccccc
Confidence 9997654
No 69
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=4.2e-19 Score=138.77 Aligned_cols=85 Identities=26% Similarity=0.394 Sum_probs=79.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHh-cCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCce-eCCeEEEE
Q 013837 291 AEGPDRVFVGGLPYYFTETQIKELLES-FGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLK-MGDKTLTV 368 (435)
Q Consensus 291 ~~~~~~l~V~nLp~~~te~~l~~~F~~-~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~-~~g~~l~V 368 (435)
..+.++|||+|||..+|+++|+++|+. ||.|..|.|+.++ +|.++|||||+|.+.++|.+||..|||.. |.|+.|.|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 345679999999999999999999999 9999999999998 89999999999999999999999999999 99999999
Q ss_pred EEccCCCC
Q 013837 369 RRATASSG 376 (435)
Q Consensus 369 ~~a~~~~~ 376 (435)
.++.++..
T Consensus 85 ~~a~~~~~ 92 (104)
T 2dhg_A 85 SVAIPKAS 92 (104)
T ss_dssp CBCCCCCS
T ss_pred EEccCCCc
Confidence 99977653
No 70
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.4e-19 Score=140.38 Aligned_cols=87 Identities=21% Similarity=0.356 Sum_probs=81.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCee--------EEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCcee
Q 013837 290 GAEGPDRVFVGGLPYYFTETQIKELLESFGTLH--------GFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKM 361 (435)
Q Consensus 290 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~--------~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~ 361 (435)
.....++|||+|||..+|+++|+++|+.||.|. .|.|+.++.+|.++|||||+|.+.++|.+||..|||..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 345678999999999999999999999999998 699999988999999999999999999999999999999
Q ss_pred CCeEEEEEEccCCCC
Q 013837 362 GDKTLTVRRATASSG 376 (435)
Q Consensus 362 ~g~~l~V~~a~~~~~ 376 (435)
.|+.|+|.++..+..
T Consensus 91 ~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 91 QGSKLKVSLARKKPP 105 (113)
T ss_dssp TTEECEEECSSCCCC
T ss_pred CCCEEEEEECCCCCC
Confidence 999999999987653
No 71
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=8.2e-19 Score=134.85 Aligned_cols=81 Identities=20% Similarity=0.256 Sum_probs=75.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEE
Q 013837 292 EGPDRVFVGGLPYYFTETQIK----ELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLT 367 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~te~~l~----~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~ 367 (435)
...++|||+|||..+++++|+ ++|++||.|..|.|+.++.+ +|||||+|.+.++|.+||+.|||..|.|+.|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 345789999999999999999 99999999999999998764 89999999999999999999999999999999
Q ss_pred EEEccCCC
Q 013837 368 VRRATASS 375 (435)
Q Consensus 368 V~~a~~~~ 375 (435)
|.+|.+..
T Consensus 84 V~~a~~~~ 91 (96)
T 2dgx_A 84 VSLATGAS 91 (96)
T ss_dssp EEECCCSS
T ss_pred EEEcCCCC
Confidence 99997664
No 72
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=4.9e-19 Score=138.66 Aligned_cols=87 Identities=24% Similarity=0.521 Sum_probs=81.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 013837 290 GAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVR 369 (435)
Q Consensus 290 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~ 369 (435)
.....++|||+|||..+|+++|+++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||.. ||..|.|+.|.|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 345678999999999999999999999999999999999988999999999999999999999998 9999999999999
Q ss_pred EccCCCCC
Q 013837 370 RATASSGQ 377 (435)
Q Consensus 370 ~a~~~~~~ 377 (435)
++.++...
T Consensus 91 ~a~~~~~~ 98 (105)
T 2dh8_A 91 PCTPRGMQ 98 (105)
T ss_dssp CSCCSSCC
T ss_pred EccCCCCC
Confidence 99877543
No 73
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.79 E-value=1.1e-18 Score=131.69 Aligned_cols=80 Identities=24% Similarity=0.559 Sum_probs=75.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013837 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (435)
Q Consensus 291 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~ 370 (435)
....++|||+|||..+|+++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+||+ +++..|.|+.|.|.+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 3556899999999999999999999999999999999999899999999999999999999997 588999999999998
Q ss_pred c
Q 013837 371 A 371 (435)
Q Consensus 371 a 371 (435)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 6
No 74
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.79 E-value=6.7e-19 Score=129.00 Aligned_cols=73 Identities=19% Similarity=0.324 Sum_probs=69.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 013837 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (435)
Q Consensus 293 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a 371 (435)
....|||+||++.+||++|+++|.+||+|..+.|.. ++|||||+|.+.++|.+|++.|||..+.|++|.|.+|
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 356899999999999999999999999999999865 5899999999999999999999999999999999999
No 75
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.7e-19 Score=137.99 Aligned_cols=83 Identities=28% Similarity=0.492 Sum_probs=78.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCC-CCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013837 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT-GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~t-g~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~ 370 (435)
.+.++|||+|||..+|+++|+++|+.|| |..|.|+.++.+ |.++|||||+|.+.++|.+|| .|||..|.|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 4567999999999999999999999999 999999999887 999999999999999999999 8999999999999999
Q ss_pred ccCCCC
Q 013837 371 ATASSG 376 (435)
Q Consensus 371 a~~~~~ 376 (435)
+.++..
T Consensus 91 a~~~~~ 96 (104)
T 1wi8_A 91 ADQAQD 96 (104)
T ss_dssp CCCCCC
T ss_pred ccCCCC
Confidence 987754
No 76
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=3.9e-19 Score=137.39 Aligned_cols=84 Identities=15% Similarity=0.322 Sum_probs=78.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013837 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (435)
Q Consensus 291 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~ 370 (435)
....++|||+|||..+|+++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|.+||+.|||..|.|+.|+|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34567899999999999999999999999999888888888999999999999999999999999999999999999999
Q ss_pred ccCC
Q 013837 371 ATAS 374 (435)
Q Consensus 371 a~~~ 374 (435)
+...
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 9654
No 77
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.79 E-value=5.9e-19 Score=133.47 Aligned_cols=83 Identities=23% Similarity=0.462 Sum_probs=77.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCC-cceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 013837 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGN-SKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (435)
Q Consensus 293 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~-~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a 371 (435)
..++|||+|||..+|+++|+++|++||.|..|.|+.+..++. ++|||||+|.+.++|.+|+..|||..|+|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 357899999999999999999999999999999999987665 8999999999999999999999999999999999999
Q ss_pred cCCC
Q 013837 372 TASS 375 (435)
Q Consensus 372 ~~~~ 375 (435)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
No 78
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.78 E-value=8.5e-19 Score=132.87 Aligned_cols=80 Identities=16% Similarity=0.373 Sum_probs=76.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 013837 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (435)
Q Consensus 294 ~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~~ 373 (435)
.++|||+|||..+|+++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+|+ .|||..|.|+.|+|.++.+
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 368999999999999999999999999999999999889999999999999999999999 8999999999999999976
Q ss_pred C
Q 013837 374 S 374 (435)
Q Consensus 374 ~ 374 (435)
+
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 79
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.78 E-value=9.6e-20 Score=177.97 Aligned_cols=84 Identities=20% Similarity=0.426 Sum_probs=79.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 013837 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a 371 (435)
.+.++|||+|||+.||+++|.++|++||.|+.|.|+.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.||
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 45679999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cCCC
Q 013837 372 TASS 375 (435)
Q Consensus 372 ~~~~ 375 (435)
....
T Consensus 180 ~~~~ 183 (437)
T 3pgw_S 180 RGRT 183 (437)
T ss_pred CCCC
Confidence 7654
No 80
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.8e-18 Score=134.88 Aligned_cols=87 Identities=24% Similarity=0.535 Sum_probs=79.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q 013837 289 GGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 368 (435)
Q Consensus 289 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V 368 (435)
......++|||+|||..+|+++|+++|+.||.|..|.|+.++. .++|||||+|.+.++|.+||..|||..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 87 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3345678999999999999999999999999999999999854 38999999999999999999999999999999999
Q ss_pred EEccCCCCC
Q 013837 369 RRATASSGQ 377 (435)
Q Consensus 369 ~~a~~~~~~ 377 (435)
.++.++...
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2cq3_A 88 NNATARVMT 96 (103)
T ss_dssp EECCSSCCC
T ss_pred EEcccCCCC
Confidence 999877543
No 81
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.78 E-value=5.4e-19 Score=148.08 Aligned_cols=81 Identities=25% Similarity=0.430 Sum_probs=76.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcC--CeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013837 293 GPDRVFVGGLPYYFTETQIKELLESFG--TLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (435)
Q Consensus 293 ~~~~l~V~nLp~~~te~~l~~~F~~~G--~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~ 370 (435)
..++|||+|||+.+|+++|+++|+.|| .|..|.|+.++.+|.++|||||+|.+.++|.+||..|||..|.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 457999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q 013837 371 ATA 373 (435)
Q Consensus 371 a~~ 373 (435)
|.+
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 954
No 82
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.78 E-value=1.3e-18 Score=143.53 Aligned_cols=87 Identities=30% Similarity=0.512 Sum_probs=81.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 013837 290 GAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVR 369 (435)
Q Consensus 290 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~ 369 (435)
.....++|||+|||..+|+++|+++|+.||.|+.|.|+.++.+|.++|||||+|.+.++|.+||+.|||..|.|+.|+|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred EccCCCC
Q 013837 370 RATASSG 376 (435)
Q Consensus 370 ~a~~~~~ 376 (435)
+|..+..
T Consensus 118 ~a~~~~~ 124 (139)
T 1u6f_A 118 LAASGHQ 124 (139)
T ss_dssp ESSCCCC
T ss_pred ECCCCCC
Confidence 9987653
No 83
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.1e-18 Score=139.18 Aligned_cols=85 Identities=32% Similarity=0.591 Sum_probs=79.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 013837 290 GAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVR 369 (435)
Q Consensus 290 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~ 369 (435)
.....++|||+|||..+|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+||..||+ .|.|+.|+|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 345568999999999999999999999999999999999998999999999999999999999999998 8999999999
Q ss_pred EccCCC
Q 013837 370 RATASS 375 (435)
Q Consensus 370 ~a~~~~ 375 (435)
+|..+.
T Consensus 92 ~a~~~~ 97 (116)
T 2cqd_A 92 LAYLGA 97 (116)
T ss_dssp ESTTTC
T ss_pred EcccCC
Confidence 997653
No 84
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=2.1e-18 Score=137.24 Aligned_cols=85 Identities=22% Similarity=0.357 Sum_probs=78.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 013837 290 GAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVR 369 (435)
Q Consensus 290 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~ 369 (435)
.....++|||+|||..+|+++|+++|+.||.|..|.|+.++ +|.++|||||+|.+.++|.+||..|||..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 34556899999999999999999999999999999999997 59999999999999999999999999999999999999
Q ss_pred EccCCC
Q 013837 370 RATASS 375 (435)
Q Consensus 370 ~a~~~~ 375 (435)
++....
T Consensus 90 ~a~~~~ 95 (114)
T 2do0_A 90 MDERAL 95 (114)
T ss_dssp ECSCCC
T ss_pred EcccCC
Confidence 997543
No 85
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.78 E-value=2.2e-19 Score=137.92 Aligned_cols=83 Identities=16% Similarity=0.339 Sum_probs=76.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013837 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (435)
Q Consensus 291 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~ 370 (435)
....++|||+|||..+|+++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+||+.|||..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 34467999999999999999999999999999899999888999999999999999999999999999999999999999
Q ss_pred ccC
Q 013837 371 ATA 373 (435)
Q Consensus 371 a~~ 373 (435)
+..
T Consensus 92 a~s 94 (95)
T 2ek1_A 92 PSS 94 (95)
T ss_dssp CC-
T ss_pred ccC
Confidence 853
No 86
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.78 E-value=5.3e-19 Score=141.62 Aligned_cols=84 Identities=27% Similarity=0.468 Sum_probs=78.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q 013837 289 GGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 368 (435)
Q Consensus 289 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V 368 (435)
......++|||+|||..+|+++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+||+.|||..|.|+.|+|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 33455689999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEcc
Q 013837 369 RRAT 372 (435)
Q Consensus 369 ~~a~ 372 (435)
.|++
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 9983
No 87
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.78 E-value=1.6e-19 Score=143.69 Aligned_cols=108 Identities=19% Similarity=0.215 Sum_probs=65.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCceEE
Q 013837 174 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVR 252 (435)
Q Consensus 174 ~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~l~ 252 (435)
..+|||+|||+.+|+++|+++|..||.|..+ .+....+.++|||||+|.+.++|.+|+ .|++..|.|+.|.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v--------~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~ 76 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSC--------KVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVF 76 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEE--------EEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEE--------EEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 4579999999999999999999999986442 111122346899999999999999999 6999999999999
Q ss_pred EcCCCCCCcchhhcCCCCCCCCCccccccccccCCCCCCCCCCeEEEcCCCCCCCHHH
Q 013837 253 VRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQ 310 (435)
Q Consensus 253 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~ 310 (435)
|.++......... ........++|||+|||+.+|++.
T Consensus 77 V~~a~~~~~~~~~---------------------~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 77 VGRFKSRKEREAE---------------------LGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp EEESSCCCC-------------------------------------------------
T ss_pred EEECCCccccccc---------------------cccccCCCCceEeCCCCCCccccc
Confidence 9987654321110 001122345799999999999863
No 88
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.78 E-value=6e-19 Score=143.05 Aligned_cols=86 Identities=24% Similarity=0.329 Sum_probs=80.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 013837 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a 371 (435)
...++|||+|||..+|+++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+||+.|||..|.|+.|.|.||
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 44678999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 013837 372 TASSGQ 377 (435)
Q Consensus 372 ~~~~~~ 377 (435)
.++...
T Consensus 100 ~~~~~~ 105 (126)
T 3ex7_B 100 FVRGPP 105 (126)
T ss_dssp EESSSC
T ss_pred cCCCCC
Confidence 876543
No 89
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.78 E-value=7.3e-19 Score=138.40 Aligned_cols=87 Identities=25% Similarity=0.430 Sum_probs=78.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013837 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (435)
Q Consensus 291 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~ 370 (435)
....++|||+|||..+|+++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||..+ |..|+|+.|.|.+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEE
Confidence 345679999999999999999999999999999999999989999999999999999999999975 5999999999999
Q ss_pred ccCCCCCC
Q 013837 371 ATASSGQS 378 (435)
Q Consensus 371 a~~~~~~~ 378 (435)
+.++..++
T Consensus 101 a~~~~~~~ 108 (109)
T 2rs2_A 101 AFPRRAQP 108 (109)
T ss_dssp CCCCCCCC
T ss_pred ccCCCCCC
Confidence 98876554
No 90
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.9e-18 Score=133.68 Aligned_cols=86 Identities=23% Similarity=0.390 Sum_probs=79.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 013837 290 GAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVR 369 (435)
Q Consensus 290 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~ 369 (435)
.....++|||+|||..+|+++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||. ++..|.|+.|.|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~ 88 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEE
Confidence 34566899999999999999999999999999999999999899999999999999999999998 5789999999999
Q ss_pred EccCCCCC
Q 013837 370 RATASSGQ 377 (435)
Q Consensus 370 ~a~~~~~~ 377 (435)
++.++...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2cqg_A 89 LPNSKQSQ 96 (103)
T ss_dssp CCCTTCCC
T ss_pred ecCCCCcC
Confidence 99877543
No 91
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.78 E-value=1.5e-18 Score=132.34 Aligned_cols=83 Identities=31% Similarity=0.608 Sum_probs=77.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 013837 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a 371 (435)
.+.++|||+|||..+|+++|+++|++||.|..|.|+.+ +|.++|||||+|.+.++|.+|+..|||..|.|+.|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45679999999999999999999999999999999984 7899999999999999999999999999999999999999
Q ss_pred cCCCC
Q 013837 372 TASSG 376 (435)
Q Consensus 372 ~~~~~ 376 (435)
.+...
T Consensus 84 ~~~~~ 88 (92)
T 2dgv_A 84 RNASG 88 (92)
T ss_dssp SCCSS
T ss_pred CCCCC
Confidence 87653
No 92
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=6.5e-19 Score=137.72 Aligned_cols=81 Identities=42% Similarity=0.727 Sum_probs=77.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 013837 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (435)
Q Consensus 294 ~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~~ 373 (435)
.++|||+|||..+|+++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+|++.|||..|.|+.|.|.+|..
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 87 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAAS 87 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTC
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCC
Confidence 46899999999999999999999999999999999988999999999999999999999999999999999999999965
Q ss_pred C
Q 013837 374 S 374 (435)
Q Consensus 374 ~ 374 (435)
.
T Consensus 88 ~ 88 (104)
T 1p1t_A 88 E 88 (104)
T ss_dssp T
T ss_pred c
Confidence 5
No 93
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.77 E-value=2.9e-18 Score=144.39 Aligned_cols=85 Identities=24% Similarity=0.372 Sum_probs=80.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 013837 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a 371 (435)
...++|||+|||..+|+++|+++|++||.|+.|.|+.++.++.++|||||+|.+.++|.+||..|||..|.|+.|+|.||
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 013837 372 TASSG 376 (435)
Q Consensus 372 ~~~~~ 376 (435)
.+...
T Consensus 117 ~~~~~ 121 (156)
T 1h2v_Z 117 AGFKE 121 (156)
T ss_dssp SCCCT
T ss_pred CCCCC
Confidence 87653
No 94
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=3.2e-18 Score=130.21 Aligned_cols=81 Identities=23% Similarity=0.365 Sum_probs=76.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 013837 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a 371 (435)
....+|||+|||..+|+++|+++|+.| .|..|.|+.+ .+|.++|||||+|.+.++|.+||. |||..|+|+.|.|.+|
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 456799999999999999999999999 9999999999 689999999999999999999999 9999999999999999
Q ss_pred cCCC
Q 013837 372 TASS 375 (435)
Q Consensus 372 ~~~~ 375 (435)
..++
T Consensus 85 ~~~~ 88 (91)
T 2dgw_A 85 KSGP 88 (91)
T ss_dssp SSCC
T ss_pred CcCC
Confidence 7764
No 95
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.3e-18 Score=132.73 Aligned_cols=82 Identities=13% Similarity=0.143 Sum_probs=73.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHh--CCceeCCeEEE
Q 013837 290 GAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL--NGLKMGDKTLT 367 (435)
Q Consensus 290 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l--~g~~~~g~~l~ 367 (435)
...+.++|||+|||+.+|+++|+++|++||.|..|.|+.+ +|||||+|.+.++|.+|++.| ++..|.|+.|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 84 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIY 84 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEE
Confidence 3456789999999999999999999999999999988764 789999999999999999977 57889999999
Q ss_pred EEEccCCCCC
Q 013837 368 VRRATASSGQ 377 (435)
Q Consensus 368 V~~a~~~~~~ 377 (435)
|.||+.+...
T Consensus 85 V~~a~~~~~~ 94 (101)
T 2cq1_A 85 IQYSNHKELK 94 (101)
T ss_dssp EEECSCSSCC
T ss_pred EEEcCcccCc
Confidence 9999876543
No 96
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=6.8e-19 Score=136.64 Aligned_cols=78 Identities=22% Similarity=0.258 Sum_probs=74.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 013837 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (435)
Q Consensus 293 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~ 372 (435)
..++|||+|||..+|+++|.++|++||.|..|.|+.++. |.++|||||+|.+.++|.+||. ++|..|+|+.|.|.++.
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 357899999999999999999999999999999999987 9999999999999999999999 99999999999999973
No 97
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.77 E-value=4.4e-19 Score=129.80 Aligned_cols=75 Identities=25% Similarity=0.585 Sum_probs=72.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 013837 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (435)
Q Consensus 296 ~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a 371 (435)
+|||+|||..+|+++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+|++ |||..|+|+.|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999998899999999999999999999998 9999999999999986
No 98
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.77 E-value=5.5e-18 Score=136.84 Aligned_cols=86 Identities=22% Similarity=0.367 Sum_probs=80.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 013837 290 GAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVR 369 (435)
Q Consensus 290 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~ 369 (435)
.....++|||+|||..+++++|+++|+.||.|..|.|+.++ +|.++|||||+|.+.++|.+|+..|||..|.|+.|+|.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34566899999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred EccCCCC
Q 013837 370 RATASSG 376 (435)
Q Consensus 370 ~a~~~~~ 376 (435)
+|.....
T Consensus 110 ~a~~~~~ 116 (124)
T 2kt5_A 110 LVASQID 116 (124)
T ss_dssp EECCTTC
T ss_pred EeCCCCC
Confidence 9977643
No 99
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.3e-18 Score=137.61 Aligned_cols=85 Identities=18% Similarity=0.267 Sum_probs=77.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH---HHHHhcCCeeEEEEeecCCCC---CcceEEEEEEcCHHHHHHHHHHhCCceeCCe
Q 013837 291 AEGPDRVFVGGLPYYFTETQIK---ELLESFGTLHGFDLVKDRDTG---NSKGYGFCVYQDPAVTDIACAALNGLKMGDK 364 (435)
Q Consensus 291 ~~~~~~l~V~nLp~~~te~~l~---~~F~~~G~v~~v~i~~~~~tg---~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~ 364 (435)
....++|||+|||+.+++++|. ++|++||.|..|.|+.++.++ .++|||||+|.+.++|.+||+.|||..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3456799999999999999999 999999999999999987654 4569999999999999999999999999999
Q ss_pred EEEEEEccCCC
Q 013837 365 TLTVRRATASS 375 (435)
Q Consensus 365 ~l~V~~a~~~~ 375 (435)
.|+|.||.++.
T Consensus 92 ~l~V~~a~~k~ 102 (111)
T 2cpi_A 92 TLKASLGTTKY 102 (111)
T ss_dssp EEEEESCCCCS
T ss_pred EEEEEeccccc
Confidence 99999998775
No 100
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1e-18 Score=134.61 Aligned_cols=79 Identities=14% Similarity=0.100 Sum_probs=71.4
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCc--eeCCeEEE
Q 013837 291 AEGPDRVFVGGLPY-YFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGL--KMGDKTLT 367 (435)
Q Consensus 291 ~~~~~~l~V~nLp~-~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~--~~~g~~l~ 367 (435)
..+.++|||+|||+ .+|+++|+++|++||.|..|.|+++ +|||||+|++.++|.+||+.||+. .|.|++|.
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 34678999999999 9999999999999999999999875 579999999999999999998864 59999999
Q ss_pred EEEccCCC
Q 013837 368 VRRATASS 375 (435)
Q Consensus 368 V~~a~~~~ 375 (435)
|.||....
T Consensus 86 V~~a~~~~ 93 (102)
T 1x4d_A 86 VHLSQKYK 93 (102)
T ss_dssp EEEECCCT
T ss_pred EEECCCCC
Confidence 99997553
No 101
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.2e-18 Score=138.61 Aligned_cols=79 Identities=18% Similarity=0.365 Sum_probs=75.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 013837 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (435)
Q Consensus 294 ~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~~ 373 (435)
.++|||+|||..+|+++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+|| .|||..|.|+.|.|.++..
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 478999999999999999999999999999999999989999999999999999999999 8999999999999999854
No 102
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=2.6e-18 Score=133.30 Aligned_cols=80 Identities=16% Similarity=0.132 Sum_probs=71.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCc--eeCCeEEEE
Q 013837 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGL--KMGDKTLTV 368 (435)
Q Consensus 291 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~--~~~g~~l~V 368 (435)
..+.++|||+|||+.+|+++|+++|++||.|..|.|+.+ +|||||+|.+.++|.+|++.|++. .|.|+.|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 456689999999999999999999999999999988764 789999999999999999988654 599999999
Q ss_pred EEccCCCC
Q 013837 369 RRATASSG 376 (435)
Q Consensus 369 ~~a~~~~~ 376 (435)
.|++.+..
T Consensus 86 ~~a~~~~~ 93 (104)
T 1wex_A 86 NYSTSKRI 93 (104)
T ss_dssp EECSSSSC
T ss_pred EEccCccc
Confidence 99987653
No 103
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.4e-18 Score=135.93 Aligned_cols=81 Identities=12% Similarity=0.162 Sum_probs=73.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhC--CceeCCeEEEE
Q 013837 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALN--GLKMGDKTLTV 368 (435)
Q Consensus 291 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~--g~~~~g~~l~V 368 (435)
..+.++|||+|||+.+|+++|+++|++||.|+.|.|+.+ +|||||+|++.++|.+|++.|+ +..|.|++|.|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 345689999999999999999999999999999999875 7899999999999999999887 46899999999
Q ss_pred EEccCCCCC
Q 013837 369 RRATASSGQ 377 (435)
Q Consensus 369 ~~a~~~~~~ 377 (435)
.||+.+...
T Consensus 102 ~~a~~k~~~ 110 (119)
T 2ad9_A 102 QFSNHKELK 110 (119)
T ss_dssp EECSSSSCC
T ss_pred EEccCCCCC
Confidence 999877643
No 104
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.76 E-value=4.7e-19 Score=144.50 Aligned_cols=84 Identities=21% Similarity=0.288 Sum_probs=78.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeE--EEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCc----eeCCe
Q 013837 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHG--FDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGL----KMGDK 364 (435)
Q Consensus 291 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~--v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~----~~~g~ 364 (435)
....++|||+|||+.+|+++|+++|++||.|.. |.|+.++.+|.++|||||+|.+. +|.+||..|||. .|.|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 356689999999999999999999999999976 99999999999999999999999 999999999999 99999
Q ss_pred EEEEEEccCCC
Q 013837 365 TLTVRRATASS 375 (435)
Q Consensus 365 ~l~V~~a~~~~ 375 (435)
.|.|.|+.++.
T Consensus 99 ~l~V~~a~~~~ 109 (131)
T 2m2b_A 99 TINVEFAKGSK 109 (131)
T ss_dssp CCCCEECCCSC
T ss_pred EEEEEECCCCC
Confidence 99999997653
No 105
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=5.9e-18 Score=133.39 Aligned_cols=83 Identities=20% Similarity=0.416 Sum_probs=75.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013837 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (435)
Q Consensus 291 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~ 370 (435)
....++|||+|||..+|+++|+++|++||.|..|.|..+ +.++|||||+|.+.++|.+||+.|||..|.|+.|+|.|
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 345689999999999999999999999999999999664 56899999999999999999999999999999999999
Q ss_pred ccCCCC
Q 013837 371 ATASSG 376 (435)
Q Consensus 371 a~~~~~ 376 (435)
++.+..
T Consensus 96 a~~~~~ 101 (109)
T 1x4a_A 96 PRSGRG 101 (109)
T ss_dssp CCCCCC
T ss_pred cccCCC
Confidence 987653
No 106
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.8e-19 Score=134.26 Aligned_cols=81 Identities=21% Similarity=0.420 Sum_probs=76.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 013837 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a 371 (435)
.+.++|||+|||..+|+++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+|+..|||..|.|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 45679999999999999999999999999999999999889999999999999999999999999999999999998876
Q ss_pred c
Q 013837 372 T 372 (435)
Q Consensus 372 ~ 372 (435)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 107
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.76 E-value=3.6e-18 Score=141.13 Aligned_cols=83 Identities=20% Similarity=0.365 Sum_probs=77.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q 013837 289 GGAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 368 (435)
Q Consensus 289 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V 368 (435)
......++|||+|||..+|+++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+||+.|||..|.|+.|+|
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 137 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 137 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34456789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EEc
Q 013837 369 RRA 371 (435)
Q Consensus 369 ~~a 371 (435)
.||
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 986
No 108
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.4e-18 Score=135.46 Aligned_cols=83 Identities=25% Similarity=0.580 Sum_probs=76.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 013837 290 GAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVR 369 (435)
Q Consensus 290 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~ 369 (435)
.....++|||+|||..+|+++|+++|++||.|..|.|+.++ +.++|||||+|.+.++|.+|+..|||..|+|+.|.|.
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999885 4589999999999999999999999999999999999
Q ss_pred EccCC
Q 013837 370 RATAS 374 (435)
Q Consensus 370 ~a~~~ 374 (435)
+|.++
T Consensus 103 ~a~~~ 107 (109)
T 2err_A 103 NATAR 107 (109)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 99765
No 109
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.76 E-value=3.8e-19 Score=135.11 Aligned_cols=80 Identities=33% Similarity=0.561 Sum_probs=74.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 013837 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374 (435)
Q Consensus 295 ~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~~~ 374 (435)
++|||+|||..+++++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.+ |.+|+..|||..|+|+.|+|.+|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 47999999999999999999999999999999999989999999999999999 99999999999999999999999765
Q ss_pred C
Q 013837 375 S 375 (435)
Q Consensus 375 ~ 375 (435)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 110
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.7e-18 Score=134.39 Aligned_cols=83 Identities=16% Similarity=0.199 Sum_probs=75.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 013837 290 GAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVR 369 (435)
Q Consensus 290 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~ 369 (435)
......+|||+|||+.+|+++|+++|+.||.| .|.|+.++ +|.++|||||+|.+.++|.+||+ +|+..|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELF 87 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 34556799999999999999999999999954 99999997 89999999999999999999995 89999999999999
Q ss_pred EccCCC
Q 013837 370 RATASS 375 (435)
Q Consensus 370 ~a~~~~ 375 (435)
++....
T Consensus 88 ~~~~~~ 93 (102)
T 1wez_A 88 LNSTAG 93 (102)
T ss_dssp EECCCC
T ss_pred ECCCCC
Confidence 987654
No 111
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.7e-18 Score=135.35 Aligned_cols=83 Identities=19% Similarity=0.338 Sum_probs=77.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCC-eeEEEEe-ecCCCCCcceEEEEEEcCHHHHHHHHHHhC--CceeCCeEEEE
Q 013837 293 GPDRVFVGGLPYYFTETQIKELLESFGT-LHGFDLV-KDRDTGNSKGYGFCVYQDPAVTDIACAALN--GLKMGDKTLTV 368 (435)
Q Consensus 293 ~~~~l~V~nLp~~~te~~l~~~F~~~G~-v~~v~i~-~~~~tg~~~G~afV~f~~~~~A~~Al~~l~--g~~~~g~~l~V 368 (435)
..++|||+|||..+|+++|+++|+.||. |..|.|+ .++.+|.++|||||+|.+.++|.+|+..|| +..|.|+.|+|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 4578999999999999999999999998 9999998 788889999999999999999999999996 59999999999
Q ss_pred EEccCCC
Q 013837 369 RRATASS 375 (435)
Q Consensus 369 ~~a~~~~ 375 (435)
.||.++.
T Consensus 87 ~~a~~~~ 93 (109)
T 2dis_A 87 DWAEPEI 93 (109)
T ss_dssp EESCSSC
T ss_pred EEcCCCC
Confidence 9998764
No 112
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.1e-18 Score=136.65 Aligned_cols=83 Identities=27% Similarity=0.492 Sum_probs=78.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 013837 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (435)
Q Consensus 293 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~ 372 (435)
..++|||+|||..+|+++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||.. +|..|.|+.|.|.++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 347899999999999999999999999999999999998999999999999999999999997 9999999999999998
Q ss_pred CCCC
Q 013837 373 ASSG 376 (435)
Q Consensus 373 ~~~~ 376 (435)
++..
T Consensus 105 ~~~~ 108 (116)
T 1x4b_A 105 AREE 108 (116)
T ss_dssp SCCC
T ss_pred CCcc
Confidence 7754
No 113
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.75 E-value=3.7e-18 Score=133.48 Aligned_cols=81 Identities=23% Similarity=0.313 Sum_probs=74.8
Q ss_pred CCCCeEEEcCCCCCC------CHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCe-
Q 013837 292 EGPDRVFVGGLPYYF------TETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDK- 364 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~------te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~- 364 (435)
...++|||+|||..+ |+++|+++|++||.|..|.|+ ..+|.++|||||+|.+.++|.+||..|||..|.|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 346799999999999 789999999999999999988 36899999999999999999999999999999998
Q ss_pred EEEEEEccCC
Q 013837 365 TLTVRRATAS 374 (435)
Q Consensus 365 ~l~V~~a~~~ 374 (435)
.|+|.+|...
T Consensus 91 ~l~V~~a~~~ 100 (105)
T 2nlw_A 91 TFRVNLFTDF 100 (105)
T ss_dssp EEEEECSCCC
T ss_pred eEEEEEcchH
Confidence 9999999754
No 114
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.75 E-value=6.7e-19 Score=136.44 Aligned_cols=82 Identities=27% Similarity=0.498 Sum_probs=75.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecC-CCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 013837 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDR-DTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVR 369 (435)
Q Consensus 291 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~-~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~ 369 (435)
....++|||+|||..+|+++|+++|+.|| |..|.|+.++ .+|.++|||||+|.+.++|.+|| .|||..|+|+.|.|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 34568999999999999999999999999 9999999998 58999999999999999999999 899999999999999
Q ss_pred EccCC
Q 013837 370 RATAS 374 (435)
Q Consensus 370 ~a~~~ 374 (435)
++.++
T Consensus 94 ~a~~~ 98 (100)
T 2j76_E 94 VADQA 98 (100)
T ss_dssp ECCCS
T ss_pred eccCC
Confidence 99765
No 115
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=9.7e-19 Score=128.68 Aligned_cols=76 Identities=28% Similarity=0.494 Sum_probs=73.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 013837 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (435)
Q Consensus 295 ~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a 371 (435)
++|||+|||..+|+++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+|+..++ ..|+|+.|.|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999998899999999999999999999999999 9999999999987
No 116
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.75 E-value=4.8e-18 Score=137.25 Aligned_cols=81 Identities=21% Similarity=0.411 Sum_probs=77.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 013837 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (435)
Q Consensus 294 ~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~~ 373 (435)
.++|||+|||..+|+++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+|| .|||..|.|+.|.|.++..
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 478999999999999999999999999999999999889999999999999999999999 7999999999999999976
Q ss_pred CC
Q 013837 374 SS 375 (435)
Q Consensus 374 ~~ 375 (435)
..
T Consensus 115 ~~ 116 (124)
T 2jwn_A 115 NM 116 (124)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 117
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.75 E-value=4.5e-18 Score=136.85 Aligned_cols=81 Identities=12% Similarity=0.229 Sum_probs=73.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEE
Q 013837 292 EGPDRVFVGGLPYYFTETQIK----ELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLT 367 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~te~~l~----~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~ 367 (435)
.+.++|||+|||+.+++++|+ ++|++||.|..|.+.. ++.++|||||+|.+.++|..|+..|||..|.|+.|+
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 456799999999999999876 6999999999888754 578999999999999999999999999999999999
Q ss_pred EEEccCCC
Q 013837 368 VRRATASS 375 (435)
Q Consensus 368 V~~a~~~~ 375 (435)
|.||..+.
T Consensus 104 V~~a~~~~ 111 (127)
T 2a3j_A 104 ITFSETPQ 111 (127)
T ss_dssp EEECCCCC
T ss_pred EEEccCcc
Confidence 99997653
No 118
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.9e-18 Score=137.29 Aligned_cols=80 Identities=13% Similarity=0.222 Sum_probs=75.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCe-eEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 013837 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTL-HGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVR 369 (435)
Q Consensus 291 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v-~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~ 369 (435)
....++|||+|||+.+|+++|+++|+.||.| ..|.|+.++ +|.++|||||+|.+.++|.+||.. ||..|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 4556899999999999999999999999999 899999998 899999999999999999999996 9999999999999
Q ss_pred Ecc
Q 013837 370 RAT 372 (435)
Q Consensus 370 ~a~ 372 (435)
++.
T Consensus 90 ~a~ 92 (114)
T 2cpy_A 90 VVT 92 (114)
T ss_dssp EEC
T ss_pred ECC
Confidence 994
No 119
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.6e-18 Score=133.28 Aligned_cols=83 Identities=16% Similarity=0.312 Sum_probs=76.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeE-EEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013837 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHG-FDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~-v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~ 370 (435)
....+|||+|||+.+|+++|+++|+.||.|.. |.|+.+ .+|.++|||||+|.+.++|.+||.. ||..|+|+.|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 45679999999999999999999999999987 888888 6899999999999999999999996 99999999999999
Q ss_pred ccCCCC
Q 013837 371 ATASSG 376 (435)
Q Consensus 371 a~~~~~ 376 (435)
+..+..
T Consensus 91 ~~~~~~ 96 (104)
T 1wg5_A 91 SSRAEV 96 (104)
T ss_dssp ECTTTS
T ss_pred CCHHHH
Confidence 976643
No 120
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.75 E-value=4.2e-18 Score=135.99 Aligned_cols=79 Identities=18% Similarity=0.315 Sum_probs=74.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCC---eeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q 013837 292 EGPDRVFVGGLPYYFTETQIKELLESFGT---LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 368 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~---v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V 368 (435)
...++|||+|||+.+|+++|+++|+.||. |..|.|+.++. |.++|||||+|.+.++|.+||+ |||..|+|+.|.|
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 45678999999999999999999999999 89999999976 9999999999999999999999 9999999999999
Q ss_pred EEcc
Q 013837 369 RRAT 372 (435)
Q Consensus 369 ~~a~ 372 (435)
.++.
T Consensus 93 ~~a~ 96 (118)
T 2db1_A 93 FKSH 96 (118)
T ss_dssp EEEC
T ss_pred EECC
Confidence 9984
No 121
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=7.3e-18 Score=134.04 Aligned_cols=82 Identities=21% Similarity=0.484 Sum_probs=77.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCcee--------CC
Q 013837 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKM--------GD 363 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~--------~g 363 (435)
...++|||+|||..+|+++|+++|+.||.|..|.|+.++ +|.++|||||+|.+.++|.+||..|||..| .+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 456899999999999999999999999999999999998 899999999999999999999999999999 68
Q ss_pred eEEEEEEccCC
Q 013837 364 KTLTVRRATAS 374 (435)
Q Consensus 364 ~~l~V~~a~~~ 374 (435)
++|.|.||.++
T Consensus 102 ~~l~v~~a~p~ 112 (114)
T 1x5o_A 102 EPLLCKFSGPS 112 (114)
T ss_dssp SCBEEEECCCS
T ss_pred CceeEEccCCC
Confidence 88999999754
No 122
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.5e-17 Score=130.78 Aligned_cols=77 Identities=22% Similarity=0.289 Sum_probs=72.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCC-----eEE
Q 013837 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGD-----KTL 366 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g-----~~l 366 (435)
...++|||+|||+.+|+++|+++|++||.|+.|.|+.+ |||||+|.+.++|.+||+.|||..|.| +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 45679999999999999999999999999999999875 799999999999999999999999999 999
Q ss_pred EEEEccCCC
Q 013837 367 TVRRATASS 375 (435)
Q Consensus 367 ~V~~a~~~~ 375 (435)
+|.+|.++.
T Consensus 86 ~V~~a~~~~ 94 (108)
T 1x4c_A 86 RVKVDGPRS 94 (108)
T ss_dssp EEEESSCCS
T ss_pred EEEeCCCCC
Confidence 999998765
No 123
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=7.7e-18 Score=130.77 Aligned_cols=82 Identities=17% Similarity=0.288 Sum_probs=74.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 013837 290 GAEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVR 369 (435)
Q Consensus 290 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~ 369 (435)
.....++|||+|||..+|+++|+++|++||.| .|+.+ .++.++|||||+|.+.++|.+||..|||..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 34567899999999999999999999999987 56666 578999999999999999999999999999999999999
Q ss_pred EccCCC
Q 013837 370 RATASS 375 (435)
Q Consensus 370 ~a~~~~ 375 (435)
|+.++.
T Consensus 87 ~a~~~~ 92 (101)
T 2fc9_A 87 LQGPRG 92 (101)
T ss_dssp ECSSCC
T ss_pred EcCCCC
Confidence 998764
No 124
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.74 E-value=2e-17 Score=128.93 Aligned_cols=79 Identities=19% Similarity=0.307 Sum_probs=72.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013837 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (435)
Q Consensus 291 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~ 370 (435)
..+.++|||+|||..+|+++|+++|++||.|..|.|++ |||||+|.+.++|.+||+.|||..|.|+.|.|.|
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEE
Confidence 45568999999999999999999999999999998863 5999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 013837 371 ATASSGQ 377 (435)
Q Consensus 371 a~~~~~~ 377 (435)
+.++...
T Consensus 80 a~~~~~~ 86 (103)
T 2dgu_A 80 AKPPDQK 86 (103)
T ss_dssp CCCCCCC
T ss_pred cCCCccc
Confidence 9877543
No 125
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.5e-17 Score=126.12 Aligned_cols=77 Identities=29% Similarity=0.510 Sum_probs=71.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 013837 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a 371 (435)
.+.++|||+|||..+|+++|+++|++||.|..|.|+ +|||||+|.+.++|.+|+..|||..|.|+.|+|.|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 456799999999999999999999999999999987 479999999999999999999999999999999999
Q ss_pred cCCCC
Q 013837 372 TASSG 376 (435)
Q Consensus 372 ~~~~~ 376 (435)
.++..
T Consensus 78 ~~~~~ 82 (90)
T 2dnq_A 78 KNKSK 82 (90)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 87654
No 126
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.3e-17 Score=129.76 Aligned_cols=82 Identities=27% Similarity=0.401 Sum_probs=75.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013837 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (435)
Q Consensus 291 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~ 370 (435)
..+.++|||+|||..+|+++|+++|+.|+ .|.++.++.++.++|||||+|.+.++|.+||..|||..|.|+.|.|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 45668999999999999999999999873 678888888899999999999999999999999999999999999999
Q ss_pred ccCCC
Q 013837 371 ATASS 375 (435)
Q Consensus 371 a~~~~ 375 (435)
|+++.
T Consensus 89 a~~~~ 93 (102)
T 2fc8_A 89 AKPKG 93 (102)
T ss_dssp CCCCC
T ss_pred ecCCC
Confidence 98765
No 127
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.73 E-value=1.5e-17 Score=130.12 Aligned_cols=81 Identities=14% Similarity=0.091 Sum_probs=73.1
Q ss_pred CeEEEcCC----CCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcC----HHH----HHHHHH--HhCCce
Q 013837 295 DRVFVGGL----PYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQD----PAV----TDIACA--ALNGLK 360 (435)
Q Consensus 295 ~~l~V~nL----p~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~----~~~----A~~Al~--~l~g~~ 360 (435)
+.|||+|| |+.+++++|+++|+.||.|..+.++.|++||.++|||||+|.+ +++ |.+|+. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 58999999 9999999999999999999999999999999999999999996 333 788888 789999
Q ss_pred eCCeEEEEEEccCCC
Q 013837 361 MGDKTLTVRRATASS 375 (435)
Q Consensus 361 ~~g~~l~V~~a~~~~ 375 (435)
|+|+.|+|.+-....
T Consensus 83 I~Gr~irV~ln~~g~ 97 (136)
T 2j8a_A 83 IMGFKFEVILNKHSI 97 (136)
T ss_dssp ETTEEEEEEECCTTH
T ss_pred ecCcEEEEEECcccH
Confidence 999999999975543
No 128
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.7e-17 Score=124.48 Aligned_cols=76 Identities=21% Similarity=0.396 Sum_probs=70.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHh-CCceeCCeEEEEE
Q 013837 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL-NGLKMGDKTLTVR 369 (435)
Q Consensus 291 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l-~g~~~~g~~l~V~ 369 (435)
....++|||+|||..+|+++|+++|++||.|..|.|+.+ +|||||+|.+.++|.+|+..| +|..|.|+.|+|.
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 345679999999999999999999999999999999874 789999999999999999999 9999999999999
Q ss_pred Ecc
Q 013837 370 RAT 372 (435)
Q Consensus 370 ~a~ 372 (435)
||+
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 984
No 129
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.73 E-value=1.4e-17 Score=132.57 Aligned_cols=81 Identities=20% Similarity=0.401 Sum_probs=74.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 013837 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a 371 (435)
.+.++|||+|||..+|+++|+++|+.||.|..|.|+.+ +.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 45679999999999999999999999999999999876 456999999999999999999999999999999999999
Q ss_pred cCCC
Q 013837 372 TASS 375 (435)
Q Consensus 372 ~~~~ 375 (435)
.+..
T Consensus 83 ~~~~ 86 (115)
T 3lqv_A 83 NANR 86 (115)
T ss_dssp CHHH
T ss_pred cCCh
Confidence 7643
No 130
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.73 E-value=8.5e-19 Score=143.23 Aligned_cols=82 Identities=16% Similarity=0.197 Sum_probs=75.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 013837 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a 371 (435)
....+|||+|||+.+|+++|+++|++|| |+.|.|+.++. |.++|||||+|.+.++|.+|| .+|+..|+|+.|.|.++
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 4457899999999999999999999999 67999999976 999999999999999999999 69999999999999999
Q ss_pred cCCCC
Q 013837 372 TASSG 376 (435)
Q Consensus 372 ~~~~~ 376 (435)
.....
T Consensus 121 ~~~~~ 125 (139)
T 2hgn_A 121 STTGA 125 (139)
T ss_dssp CCSCC
T ss_pred CCCCC
Confidence 76643
No 131
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.73 E-value=5.6e-18 Score=137.95 Aligned_cols=79 Identities=18% Similarity=0.286 Sum_probs=75.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCC---eeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q 013837 292 EGPDRVFVGGLPYYFTETQIKELLESFGT---LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 368 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~---v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V 368 (435)
...++|||+|||+.+|+++|+++|+.||. |..|.|+.++. |.++|||||+|.+.++|.+||+ |||..|+|+.|.|
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V 119 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV 119 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence 44678999999999999999999999999 89999999987 9999999999999999999999 9999999999999
Q ss_pred EEcc
Q 013837 369 RRAT 372 (435)
Q Consensus 369 ~~a~ 372 (435)
.++.
T Consensus 120 ~~a~ 123 (136)
T 2hgl_A 120 FKSH 123 (136)
T ss_dssp EECC
T ss_pred EECC
Confidence 9984
No 132
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.73 E-value=9.4e-18 Score=131.51 Aligned_cols=79 Identities=16% Similarity=0.158 Sum_probs=71.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcC-CeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013837 292 EGPDRVFVGGLPYYFTETQIKELLESFG-TLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~ 370 (435)
....+|||+|||+.+|+++|+++|++|| .|..+.|..+ .++|||||+|.+.++|.+||+.|||..|.|+.|.|.+
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3456899999999999999999999999 8999888543 4789999999999999999999999999999999999
Q ss_pred ccCC
Q 013837 371 ATAS 374 (435)
Q Consensus 371 a~~~ 374 (435)
+...
T Consensus 102 a~~~ 105 (111)
T 2jvr_A 102 DDNP 105 (111)
T ss_dssp SCC-
T ss_pred CCCC
Confidence 9654
No 133
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.73 E-value=5.7e-18 Score=151.32 Aligned_cols=82 Identities=17% Similarity=0.331 Sum_probs=77.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcC--CeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013837 293 GPDRVFVGGLPYYFTETQIKELLESFG--TLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (435)
Q Consensus 293 ~~~~l~V~nLp~~~te~~l~~~F~~~G--~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~ 370 (435)
..++|||+|||+.+|+++|+++|+.|| .|+.|.|+.++.+|.++|||||+|.+.++|.+||+.|||..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 456899999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 013837 371 ATAS 374 (435)
Q Consensus 371 a~~~ 374 (435)
|+..
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 9543
No 134
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2e-18 Score=139.45 Aligned_cols=82 Identities=18% Similarity=0.309 Sum_probs=75.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013837 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (435)
Q Consensus 291 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~ 370 (435)
.....+|||+|||+.+|+++|+++|+.||.|..+.++.+..+|.++|||||+|.+.++|.+||. |||..|+|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3456799999999999999999999999999886667766789999999999999999999999 999999999999999
Q ss_pred ccC
Q 013837 371 ATA 373 (435)
Q Consensus 371 a~~ 373 (435)
|..
T Consensus 101 a~~ 103 (124)
T 1wel_A 101 ITK 103 (124)
T ss_dssp ECH
T ss_pred CCH
Confidence 943
No 135
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.73 E-value=2.2e-18 Score=126.01 Aligned_cols=75 Identities=23% Similarity=0.432 Sum_probs=72.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 013837 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (435)
Q Consensus 296 ~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a 371 (435)
+|||+|||..+|+++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+|+. ++|..|.|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 58999999999999999999999999999999998899999999999999999999999 5999999999999986
No 136
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.6e-17 Score=127.92 Aligned_cols=79 Identities=27% Similarity=0.526 Sum_probs=72.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeC--CeEEEE
Q 013837 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMG--DKTLTV 368 (435)
Q Consensus 291 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~--g~~l~V 368 (435)
..+.++|||+|||..+|+++|+++|++||.|..|.|..+ +|||||+|.+.++|.+|++.|||..|. |+.|.|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 345689999999999999999999999999999988754 689999999999999999999999999 999999
Q ss_pred EEccCCC
Q 013837 369 RRATASS 375 (435)
Q Consensus 369 ~~a~~~~ 375 (435)
.|+.++.
T Consensus 88 ~~a~~~~ 94 (97)
T 1why_A 88 DFAKSGP 94 (97)
T ss_dssp EECCCCC
T ss_pred EECCCCC
Confidence 9998764
No 137
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.73 E-value=1.2e-18 Score=135.43 Aligned_cols=83 Identities=19% Similarity=0.330 Sum_probs=75.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 013837 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a 371 (435)
....+|||+|||..+|+++|+++|+.||.|.. .++.+..+|.++|||||+|.+.++|.+||+ |||..|.|+.|.|.+|
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 45679999999999999999999999999887 666776788999999999999999999999 9999999999999999
Q ss_pred cCCCC
Q 013837 372 TASSG 376 (435)
Q Consensus 372 ~~~~~ 376 (435)
.++..
T Consensus 93 ~~~~~ 97 (101)
T 1fj7_A 93 KGRDG 97 (101)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 87653
No 138
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.4e-17 Score=128.85 Aligned_cols=80 Identities=33% Similarity=0.527 Sum_probs=73.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013837 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (435)
Q Consensus 291 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~ 370 (435)
..+.++|||+|||..+|+++|+++|++||.|..|.|+++ +|||||+|.+.++|.+|++.|||..|.|+.|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 355679999999999999999999999999999999864 68999999999999999999999999999999999
Q ss_pred ccCCCC
Q 013837 371 ATASSG 376 (435)
Q Consensus 371 a~~~~~ 376 (435)
+.++..
T Consensus 86 a~~~~~ 91 (99)
T 2cpj_A 86 ACHSAS 91 (99)
T ss_dssp SSCCSC
T ss_pred cCCCCC
Confidence 987653
No 139
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.73 E-value=3.5e-18 Score=126.90 Aligned_cols=72 Identities=25% Similarity=0.401 Sum_probs=67.5
Q ss_pred CeEEEcCCCCCC------CHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCe-EEE
Q 013837 295 DRVFVGGLPYYF------TETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDK-TLT 367 (435)
Q Consensus 295 ~~l~V~nLp~~~------te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~-~l~ 367 (435)
++|||+|||..+ |+++|+++|++||.|..|.|+ +.+|.++|||||+|.+.++|.+|+..|||..|.|+ .|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 589999999999 789999999999999999987 35899999999999999999999999999999999 887
Q ss_pred E
Q 013837 368 V 368 (435)
Q Consensus 368 V 368 (435)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 140
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.4e-18 Score=136.24 Aligned_cols=85 Identities=20% Similarity=0.258 Sum_probs=73.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 013837 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a 371 (435)
.+.++|||+|||..+|+++|+++|+.||.|..+.+..+..+|.++|||||+|.+.++|.+||..|||..|.|+.|.|.||
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 45689999999999999999999999999843322222226889999999999999999999999999999999999999
Q ss_pred cCCCC
Q 013837 372 TASSG 376 (435)
Q Consensus 372 ~~~~~ 376 (435)
..+..
T Consensus 103 ~~~~~ 107 (115)
T 2cpx_A 103 KNKKQ 107 (115)
T ss_dssp CCCSC
T ss_pred cCCCC
Confidence 87654
No 141
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.7e-17 Score=129.58 Aligned_cols=79 Identities=18% Similarity=0.372 Sum_probs=73.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 013837 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a 371 (435)
...++|||+|||..+|+++|+++|+.||.|..|.|+.+ +|||||+|.+.++|.+||..|||..|.|+.|+|.|+
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 45679999999999999999999999999999999876 689999999999999999999999999999999999
Q ss_pred cCCCC
Q 013837 372 TASSG 376 (435)
Q Consensus 372 ~~~~~ 376 (435)
+.+..
T Consensus 97 ~~~~~ 101 (109)
T 1x4g_A 97 KESPD 101 (109)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 87754
No 142
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.72 E-value=9.7e-18 Score=129.21 Aligned_cols=81 Identities=15% Similarity=0.364 Sum_probs=74.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEE
Q 013837 292 EGPDRVFVGGLPYYFTETQIK----ELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLT 367 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~te~~l~----~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~ 367 (435)
.+.++|||+|||..+|+++|+ ++|++||.|..|.|+. +|.++|||||+|.+.++|.+|+..|||..|.|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 456799999999999999999 9999999999998874 477889999999999999999999999999999999
Q ss_pred EEEccCCC
Q 013837 368 VRRATASS 375 (435)
Q Consensus 368 V~~a~~~~ 375 (435)
|.|+.++.
T Consensus 83 v~~a~~~~ 90 (97)
T 1nu4_A 83 IQYAKTDS 90 (97)
T ss_dssp EEECSSCC
T ss_pred EEEccCCC
Confidence 99997764
No 143
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=4.1e-17 Score=123.77 Aligned_cols=77 Identities=27% Similarity=0.406 Sum_probs=71.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013837 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (435)
Q Consensus 291 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~ 370 (435)
....++|||+|||..+|+++|+++|++||.|..|.|++ +||||+|.+.++|.+|+..|||..|.|+.|.|.+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 35567999999999999999999999999999999874 3999999999999999999999999999999999
Q ss_pred ccCCC
Q 013837 371 ATASS 375 (435)
Q Consensus 371 a~~~~ 375 (435)
+.+..
T Consensus 78 a~~~~ 82 (90)
T 2dnp_A 78 STKGQ 82 (90)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 98764
No 144
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.7e-17 Score=129.83 Aligned_cols=76 Identities=25% Similarity=0.373 Sum_probs=71.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 013837 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (435)
Q Consensus 294 ~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~ 372 (435)
..+|||+|||+.+|+++|+++|+.| .|..|.|+.++. |.++|||||+|.+.++|.+|| .|||..|+|+.|.|..+.
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 3589999999999999999999999 899999999975 999999999999999999999 599999999999999883
No 145
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=5.5e-17 Score=123.59 Aligned_cols=78 Identities=19% Similarity=0.335 Sum_probs=71.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013837 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (435)
Q Consensus 291 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~ 370 (435)
....++|||+|||..+|+++|+++|++||.|..|.|++ +||||+|.+.++|.+|+..|||..|.|+.|+|.+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 35567999999999999999999999999999999874 3999999999999999999999999999999999
Q ss_pred ccCCCC
Q 013837 371 ATASSG 376 (435)
Q Consensus 371 a~~~~~ 376 (435)
+.++..
T Consensus 79 a~~~~~ 84 (92)
T 2dgt_A 79 STSRLR 84 (92)
T ss_dssp SSCCCS
T ss_pred ccCCCC
Confidence 987653
No 146
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.72 E-value=2.3e-17 Score=129.38 Aligned_cols=77 Identities=18% Similarity=0.446 Sum_probs=72.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013837 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (435)
Q Consensus 291 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~ 370 (435)
....++|||+|||..+|+++|+++|++||.|..|.|+ +|||||+|.+.++|.+|+..|||..|+|+.|.|.|
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 4556899999999999999999999999999999987 58999999999999999999999999999999999
Q ss_pred ccCCC
Q 013837 371 ATASS 375 (435)
Q Consensus 371 a~~~~ 375 (435)
+..+.
T Consensus 100 a~~~~ 104 (108)
T 2jvo_A 100 SKLPA 104 (108)
T ss_dssp CSCCC
T ss_pred ecCCC
Confidence 97764
No 147
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.3e-17 Score=129.43 Aligned_cols=77 Identities=19% Similarity=0.389 Sum_probs=71.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 013837 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a 371 (435)
...++|||+|||..+|+++|+++|+.||.|..|.|.. ++|||||+|.+.++|.+|+..|||..|.|+.|+|.||
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 3457999999999999999999999999999999873 4789999999999999999999999999999999999
Q ss_pred cCC
Q 013837 372 TAS 374 (435)
Q Consensus 372 ~~~ 374 (435)
+++
T Consensus 99 ~~~ 101 (101)
T 2la4_A 99 KER 101 (101)
T ss_dssp CCC
T ss_pred cCC
Confidence 653
No 148
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.72 E-value=3.5e-17 Score=129.10 Aligned_cols=75 Identities=24% Similarity=0.460 Sum_probs=69.9
Q ss_pred CCCeEEEcCCCCC-CCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 013837 293 GPDRVFVGGLPYY-FTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (435)
Q Consensus 293 ~~~~l~V~nLp~~-~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a 371 (435)
..++|||+|||.. +|+++|+++|++||.|..|.| ++|||||+|.+.++|.+||+.|||..|+|+.|+|.|+
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 4579999999999 999999999999999999988 3789999999999999999999999999999999999
Q ss_pred cCCC
Q 013837 372 TASS 375 (435)
Q Consensus 372 ~~~~ 375 (435)
....
T Consensus 98 ~~~~ 101 (110)
T 1wf1_A 98 GEPK 101 (110)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7543
No 149
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=3.3e-17 Score=126.15 Aligned_cols=79 Identities=28% Similarity=0.434 Sum_probs=71.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 013837 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a 371 (435)
...++|||+|||..+|+++|+++|+.||.|. +.++.+ .++|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 4467999999999999999999999999997 666654 56899999999999999999999999999999999999
Q ss_pred cCCC
Q 013837 372 TASS 375 (435)
Q Consensus 372 ~~~~ 375 (435)
.++.
T Consensus 92 ~~~~ 95 (97)
T 2e5j_A 92 RQQR 95 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7764
No 150
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.72 E-value=1.3e-17 Score=129.41 Aligned_cols=76 Identities=20% Similarity=0.375 Sum_probs=72.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 013837 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374 (435)
Q Consensus 295 ~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~~~ 374 (435)
++|||+|||..+|+++|+++|++||.|..|.|+.+ ++|||||+|.+.++|.+|++.|||..|.|+.|.|.+++.+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999999886 5899999999999999999999999999999999999876
Q ss_pred C
Q 013837 375 S 375 (435)
Q Consensus 375 ~ 375 (435)
.
T Consensus 76 ~ 76 (101)
T 2hvz_A 76 P 76 (101)
T ss_dssp C
T ss_pred C
Confidence 5
No 151
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.72 E-value=5.4e-17 Score=124.74 Aligned_cols=76 Identities=16% Similarity=0.363 Sum_probs=70.4
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEE
Q 013837 291 AEGPDRVFVGGLPY-YFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVR 369 (435)
Q Consensus 291 ~~~~~~l~V~nLp~-~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~ 369 (435)
....++|||+|||. .+++++|+++|+.||.|..|.|. +|||||+|.+.++|.+|+..|||..|.|+.|+|.
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 90 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILE 90 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34568999999998 99999999999999999999883 6899999999999999999999999999999999
Q ss_pred EccCC
Q 013837 370 RATAS 374 (435)
Q Consensus 370 ~a~~~ 374 (435)
|++.+
T Consensus 91 ~a~~~ 95 (97)
T 2xnq_A 91 VSSSN 95 (97)
T ss_dssp ECCCC
T ss_pred ecCCC
Confidence 99764
No 152
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=4.7e-18 Score=132.72 Aligned_cols=79 Identities=14% Similarity=0.220 Sum_probs=71.0
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhC--CceeCCeEEE
Q 013837 291 AEGPDRVFVGGLPYY-FTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALN--GLKMGDKTLT 367 (435)
Q Consensus 291 ~~~~~~l~V~nLp~~-~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~--g~~~~g~~l~ 367 (435)
..+.++|||+|||+. +|+++|+++|++||.|..|.|++ ++|||||+|.+.++|.+|++.|| +..|.|+.|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 456789999999998 99999999999999999999975 37899999999999999999886 4569999999
Q ss_pred EEEccCCC
Q 013837 368 VRRATASS 375 (435)
Q Consensus 368 V~~a~~~~ 375 (435)
|.||..+.
T Consensus 96 V~~a~~~~ 103 (112)
T 1x4f_A 96 VDLSEKYK 103 (112)
T ss_dssp EEEECSCS
T ss_pred EEECcccc
Confidence 99997664
No 153
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.71 E-value=2.1e-17 Score=141.54 Aligned_cols=83 Identities=22% Similarity=0.353 Sum_probs=78.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 013837 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a 371 (435)
...++|||+|||..+|+++|+++|+.||.|+.|.|+.++ +|.++|||||+|.+.++|.+||+.|||..|.|+.|+|.||
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 456799999999999999999999999999999999998 8999999999999999999999999999999999999999
Q ss_pred cCCC
Q 013837 372 TASS 375 (435)
Q Consensus 372 ~~~~ 375 (435)
....
T Consensus 165 ~~~~ 168 (177)
T 2f3j_A 165 ASQI 168 (177)
T ss_dssp SSGG
T ss_pred cCCC
Confidence 7653
No 154
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.71 E-value=3.6e-18 Score=134.02 Aligned_cols=80 Identities=16% Similarity=0.270 Sum_probs=75.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCC---eeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEE
Q 013837 291 AEGPDRVFVGGLPYYFTETQIKELLESFGT---LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLT 367 (435)
Q Consensus 291 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~---v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~ 367 (435)
.....+|||+|||+.+|+++|+++|+.||. |..|.|+.++. |.++|||||+|.+.++|.+||. |||..|+|+.|.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 355679999999999999999999999998 89999999987 9999999999999999999999 999999999999
Q ss_pred EEEcc
Q 013837 368 VRRAT 372 (435)
Q Consensus 368 V~~a~ 372 (435)
|.++.
T Consensus 86 V~~a~ 90 (107)
T 2lmi_A 86 VYEIN 90 (107)
T ss_dssp CEECC
T ss_pred EEECC
Confidence 99984
No 155
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=2e-17 Score=130.54 Aligned_cols=77 Identities=18% Similarity=0.141 Sum_probs=71.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 013837 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (435)
Q Consensus 294 ~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~~ 373 (435)
.++|||+|||..+|+++|+++|++||.|..|.|+. ++|||||+|.+.++|.+||..|||..|.|+.|.|.||..
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 46899999999999999999999999999998875 478999999999999999999999999999999999977
Q ss_pred CCC
Q 013837 374 SSG 376 (435)
Q Consensus 374 ~~~ 376 (435)
...
T Consensus 84 ~~~ 86 (111)
T 1whx_A 84 GVF 86 (111)
T ss_dssp TTT
T ss_pred Ccc
Confidence 643
No 156
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.71 E-value=1.8e-17 Score=127.36 Aligned_cols=79 Identities=15% Similarity=0.304 Sum_probs=72.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 013837 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a 371 (435)
...++|||+|||..+|+++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 456799999999999999999999999988665 246889999999999999999999999999999999999999
Q ss_pred cCCC
Q 013837 372 TASS 375 (435)
Q Consensus 372 ~~~~ 375 (435)
.++.
T Consensus 89 ~~~~ 92 (96)
T 1fjc_A 89 GEKG 92 (96)
T ss_dssp SSSC
T ss_pred CCCC
Confidence 7764
No 157
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=3.6e-17 Score=120.88 Aligned_cols=73 Identities=14% Similarity=0.195 Sum_probs=65.3
Q ss_pred CCCe-EEEcCCCCCCCHHH----HHHHHHhc-CCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEE
Q 013837 293 GPDR-VFVGGLPYYFTETQ----IKELLESF-GTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTL 366 (435)
Q Consensus 293 ~~~~-l~V~nLp~~~te~~----l~~~F~~~-G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l 366 (435)
+..+ |||+|||+.+++++ |+++|++| |.|++| +| |+|||+|.+.++|.+|++.|||..|.|+.|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 3455 99999999999988 55899999 499887 34 999999999999999999999999999999
Q ss_pred EEEEccCCC
Q 013837 367 TVRRATASS 375 (435)
Q Consensus 367 ~V~~a~~~~ 375 (435)
+|.||+.+.
T Consensus 77 ~v~~A~~~s 85 (96)
T 2diu_A 77 IVSFTPKNR 85 (96)
T ss_dssp EEESSCCSC
T ss_pred EEEecCCCc
Confidence 999998764
No 158
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.70 E-value=8.7e-17 Score=128.52 Aligned_cols=78 Identities=22% Similarity=0.297 Sum_probs=70.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceE-EEEEEcCHHHHHHHHHHhCCceeCC--eEEEEEE
Q 013837 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGY-GFCVYQDPAVTDIACAALNGLKMGD--KTLTVRR 370 (435)
Q Consensus 294 ~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~-afV~f~~~~~A~~Al~~l~g~~~~g--~~l~V~~ 370 (435)
.-.|||+||++.+|+++|+++|++||.|.+|.|+.. .+|| |||+|.+.++|.+|++.|||..|.| +.|+|+|
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ 102 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 102 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEE
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEe
Confidence 346889999999999999999999999999988765 2677 9999999999999999999999988 9999999
Q ss_pred ccCCCC
Q 013837 371 ATASSG 376 (435)
Q Consensus 371 a~~~~~ 376 (435)
|+++..
T Consensus 103 ak~~~l 108 (130)
T 3zzy_A 103 SKLTSL 108 (130)
T ss_dssp CSCSSC
T ss_pred cCCCce
Confidence 987653
No 159
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.9e-17 Score=124.73 Aligned_cols=78 Identities=23% Similarity=0.393 Sum_probs=69.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCC-eeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCC-ceeCCeEEEEE
Q 013837 292 EGPDRVFVGGLPYYFTETQIKELLESFGT-LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNG-LKMGDKTLTVR 369 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~-v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g-~~~~g~~l~V~ 369 (435)
...++|||+|||..+|+++|+++|++||. |..+.+. ++|||||+|.+.++|.+|++.||| ..|.|+.|+|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 45679999999999999999999999999 6555552 378999999999999999999999 99999999999
Q ss_pred EccCCCC
Q 013837 370 RATASSG 376 (435)
Q Consensus 370 ~a~~~~~ 376 (435)
|+.++..
T Consensus 79 ~a~~~~~ 85 (93)
T 2cqh_A 79 YSVSKKL 85 (93)
T ss_dssp ECCCCCC
T ss_pred EccCccc
Confidence 9987653
No 160
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.54 E-value=9.9e-19 Score=139.50 Aligned_cols=84 Identities=24% Similarity=0.413 Sum_probs=78.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeE--------EEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCC
Q 013837 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHG--------FDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGD 363 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~--------v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g 363 (435)
.+.++|||+|||..+|+++|+++|++||.|.. |.|+.++.+|.++|||||+|.+.++|.+||..|||..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 34578999999999999999999999999998 8999998899999999999999999999999999999999
Q ss_pred eEEEEEEccCCC
Q 013837 364 KTLTVRRATASS 375 (435)
Q Consensus 364 ~~l~V~~a~~~~ 375 (435)
+.|.|.+|.++.
T Consensus 85 ~~l~V~~a~~~~ 96 (116)
T 2lcw_A 85 NPIKVSFATRRA 96 (116)
Confidence 999999997654
No 161
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=2e-17 Score=132.22 Aligned_cols=79 Identities=19% Similarity=0.286 Sum_probs=72.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCe----eEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEE
Q 013837 292 EGPDRVFVGGLPYYFTETQIKELLESFGTL----HGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLT 367 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v----~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~ 367 (435)
....+|||+|||+.+|+++|+++|++||.| ..|.|+.+. +|.++|||||+|.+.++|.+||.. |+..|+|+.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 345799999999999999999999999975 689999984 899999999999999999999995 99999999999
Q ss_pred EEEcc
Q 013837 368 VRRAT 372 (435)
Q Consensus 368 V~~a~ 372 (435)
|..+.
T Consensus 99 V~~a~ 103 (123)
T 2dha_A 99 LFRST 103 (123)
T ss_dssp CEEEC
T ss_pred EEECC
Confidence 99983
No 162
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.70 E-value=8.9e-17 Score=142.62 Aligned_cols=83 Identities=22% Similarity=0.275 Sum_probs=78.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 013837 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a 371 (435)
.+.++|||+|||..+|+++|+++|++||.|+.|.|++++.+|.++|||||+|.+.++|.+||..|||..+.|+.|+|.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCC
Q 013837 372 TAS 374 (435)
Q Consensus 372 ~~~ 374 (435)
...
T Consensus 93 ~~~ 95 (213)
T 4f02_A 93 QRD 95 (213)
T ss_dssp CCC
T ss_pred ccc
Confidence 654
No 163
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2e-16 Score=122.22 Aligned_cols=78 Identities=18% Similarity=0.270 Sum_probs=71.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhc--CCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q 013837 291 AEGPDRVFVGGLPYYFTETQIKELLESF--GTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 368 (435)
Q Consensus 291 ~~~~~~l~V~nLp~~~te~~l~~~F~~~--G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V 368 (435)
....++|||+|||..+|+++|+++|++| |.|..|.+. +|||||+|.+.++|.+||..|||..|.|+.|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 3456899999999999999999999999 889888764 569999999999999999999999999999999
Q ss_pred EEccCCCC
Q 013837 369 RRATASSG 376 (435)
Q Consensus 369 ~~a~~~~~ 376 (435)
.|+.++..
T Consensus 84 ~~a~~~~~ 91 (99)
T 2cpd_A 84 TLAKPVDK 91 (99)
T ss_dssp ECCCCCCC
T ss_pred EECCCCCC
Confidence 99987653
No 164
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.70 E-value=3.5e-17 Score=127.28 Aligned_cols=80 Identities=29% Similarity=0.564 Sum_probs=75.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 013837 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (435)
Q Consensus 293 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~ 372 (435)
..++|||+|||..+|+++|+++|+.||.|..|.|+.++ +|.++|||||+|.+.++|.+|+. +|..|+|+.|.|.++.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 34689999999999999999999999999999999998 89999999999999999999999 9999999999999997
Q ss_pred CCC
Q 013837 373 ASS 375 (435)
Q Consensus 373 ~~~ 375 (435)
.+.
T Consensus 85 ~~~ 87 (102)
T 2xs2_A 85 RKQ 87 (102)
T ss_dssp ECC
T ss_pred cCc
Confidence 654
No 165
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.70 E-value=1.1e-16 Score=132.82 Aligned_cols=78 Identities=22% Similarity=0.273 Sum_probs=71.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCC--eEEEEEEc
Q 013837 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGD--KTLTVRRA 371 (435)
Q Consensus 294 ~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g--~~l~V~~a 371 (435)
..+|||+||++.+|+++|+++|++||.|+.|.|+.+. ++|||||+|.+.++|.+|++.|||..|.| +.|+|.||
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 3468999999999999999999999999999987542 57999999999999999999999999965 99999999
Q ss_pred cCCC
Q 013837 372 TASS 375 (435)
Q Consensus 372 ~~~~ 375 (435)
+++.
T Consensus 122 k~~~ 125 (164)
T 1sjr_A 122 KLTS 125 (164)
T ss_dssp SSSS
T ss_pred cCCc
Confidence 8775
No 166
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.69 E-value=1.4e-16 Score=123.79 Aligned_cols=81 Identities=15% Similarity=0.085 Sum_probs=72.6
Q ss_pred CCCCeEEEcCCCC-----CCCHHHHHHHHHhcCCeeEEEEeecCCC-CCcceEEEEEEcCHHHHHHHHHHhCCceeCCeE
Q 013837 292 EGPDRVFVGGLPY-----YFTETQIKELLESFGTLHGFDLVKDRDT-GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKT 365 (435)
Q Consensus 292 ~~~~~l~V~nLp~-----~~te~~l~~~F~~~G~v~~v~i~~~~~t-g~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~ 365 (435)
.++++|+|.||.. ..++++|+++|++||.|+.|.|+.++.+ +.++|||||+|.+.++|.+|+..|||..|+|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4567999999963 2378999999999999999999998654 688999999999999999999999999999999
Q ss_pred EEEEEcc
Q 013837 366 LTVRRAT 372 (435)
Q Consensus 366 l~V~~a~ 372 (435)
|.|.|+.
T Consensus 86 i~v~~a~ 92 (105)
T 2pe8_A 86 VKACFYN 92 (105)
T ss_dssp CEEEECC
T ss_pred EEEEEcC
Confidence 9999994
No 167
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.69 E-value=4.7e-17 Score=124.96 Aligned_cols=77 Identities=16% Similarity=0.363 Sum_probs=70.8
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013837 292 EGPDRVFVGGLPY-YFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (435)
Q Consensus 292 ~~~~~l~V~nLp~-~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~ 370 (435)
.+.++|||+|||. .+|+++|+++|++||.|..|.|. +|||||+|.+.++|.+|+..|||..|.|+.|.|.+
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 4567999999998 99999999999999999999884 67999999999999999999999999999999999
Q ss_pred ccCCCC
Q 013837 371 ATASSG 376 (435)
Q Consensus 371 a~~~~~ 376 (435)
+..+..
T Consensus 80 a~~~~~ 85 (96)
T 2kvi_A 80 SSSNAR 85 (96)
T ss_dssp EECCCC
T ss_pred cCcCCC
Confidence 977643
No 168
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=9.3e-17 Score=123.39 Aligned_cols=80 Identities=18% Similarity=0.247 Sum_probs=72.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEE-EEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013837 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGF-DLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v-~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~ 370 (435)
...++|||+|||+.+|+++|+++|+.||.|..| .|+.++.+ |.|||+|.+.++|.+||..|||..|.|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 345789999999999999999999999999999 58887654 3499999999999999999999999999999999
Q ss_pred ccCCC
Q 013837 371 ATASS 375 (435)
Q Consensus 371 a~~~~ 375 (435)
|.++.
T Consensus 89 a~~~~ 93 (96)
T 2e44_A 89 IPDEM 93 (96)
T ss_dssp CCCCC
T ss_pred cCccc
Confidence 98763
No 169
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=7.2e-17 Score=126.02 Aligned_cols=79 Identities=23% Similarity=0.329 Sum_probs=70.5
Q ss_pred CCCCCeEEE--cCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCcee-----CC
Q 013837 291 AEGPDRVFV--GGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKM-----GD 363 (435)
Q Consensus 291 ~~~~~~l~V--~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~-----~g 363 (435)
..++++||| +||++.+|+++|+++|++||.|..|.|+.+ +|||||+|.+.++|.+|++.|||..| .|
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 345678999 779999999999999999999999887642 78999999999999999999999998 78
Q ss_pred eEEEEEEccCCC
Q 013837 364 KTLTVRRATASS 375 (435)
Q Consensus 364 ~~l~V~~a~~~~ 375 (435)
.+|.|.|+..-+
T Consensus 96 ~~l~v~~a~~~p 107 (114)
T 2cq2_A 96 ITLYLNFVEKVQ 107 (114)
T ss_dssp EECEEEEESCCC
T ss_pred cEEEEEecccCc
Confidence 999999997544
No 170
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.69 E-value=2.1e-17 Score=136.96 Aligned_cols=82 Identities=21% Similarity=0.267 Sum_probs=73.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEE--------EEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeC
Q 013837 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGF--------DLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMG 362 (435)
Q Consensus 291 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v--------~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~ 362 (435)
..+.++|||+|||+.+|+++|+++|+.||.|..+ .+. .+|.++|||||+|.+.++|.+||..|||..|.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~ 118 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEANGYVLF 118 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHHTTBEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 3556899999999999999999999999998763 333 36889999999999999999999999999999
Q ss_pred CeEEEEEEccCCC
Q 013837 363 DKTLTVRRATASS 375 (435)
Q Consensus 363 g~~l~V~~a~~~~ 375 (435)
|+.|.|.||....
T Consensus 119 g~~l~V~~a~~~~ 131 (143)
T 3egn_A 119 GKPMVVQFARSAR 131 (143)
T ss_dssp TEECEEEECCCSC
T ss_pred CcEEEEEECCCCC
Confidence 9999999997654
No 171
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.69 E-value=3.2e-17 Score=131.26 Aligned_cols=80 Identities=19% Similarity=0.375 Sum_probs=72.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCee--EEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q 013837 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLH--GFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 368 (435)
Q Consensus 291 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~--~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V 368 (435)
.....+|||+|||+.+|+++|+++|+.| .|+ .|.|+.++. |.++|||||+|.+.++|.+||+ +++..|+|+.|.|
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V 115 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIEV 115 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEE
Confidence 3456789999999999999999999999 666 899999986 9999999999999999999999 5889999999999
Q ss_pred EEccC
Q 013837 369 RRATA 373 (435)
Q Consensus 369 ~~a~~ 373 (435)
.++..
T Consensus 116 ~~a~~ 120 (126)
T 2hgm_A 116 FKSSQ 120 (126)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 99853
No 172
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.68 E-value=2.3e-16 Score=134.16 Aligned_cols=82 Identities=38% Similarity=0.599 Sum_probs=78.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 013837 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (435)
Q Consensus 294 ~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~~ 373 (435)
.++|||+|||..+|+++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+|++.|||..+.|+.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 47899999999999999999999999999999999988999999999999999999999999999999999999999976
Q ss_pred CC
Q 013837 374 SS 375 (435)
Q Consensus 374 ~~ 375 (435)
..
T Consensus 82 ~~ 83 (167)
T 1fxl_A 82 SS 83 (167)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 173
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=3.3e-16 Score=120.47 Aligned_cols=78 Identities=22% Similarity=0.335 Sum_probs=70.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013837 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (435)
Q Consensus 291 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~ 370 (435)
....++|||+|| .+|+++|+++|++||.|..|.|. .++|||||+|.+.++|.+||..|||..|.|+.|+|.|
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 345679999996 89999999999999999999884 3578999999999999999999999999999999999
Q ss_pred ccCCCC
Q 013837 371 ATASSG 376 (435)
Q Consensus 371 a~~~~~ 376 (435)
+.++..
T Consensus 84 a~~~~~ 89 (97)
T 1x5p_A 84 ARKQPM 89 (97)
T ss_dssp CSSCCC
T ss_pred CCCCCC
Confidence 987654
No 174
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.4e-16 Score=121.83 Aligned_cols=78 Identities=24% Similarity=0.420 Sum_probs=70.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 013837 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a 371 (435)
...++|||+|||..+|+++|+++|+.||.|..| +.++.+|. ||||+|.+.++|.+||. |||..|.|+.|.|.++
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 345799999999999999999999999999987 56655665 99999999999999999 9999999999999999
Q ss_pred cCCC
Q 013837 372 TASS 375 (435)
Q Consensus 372 ~~~~ 375 (435)
..+.
T Consensus 80 ~~~~ 83 (94)
T 2e5g_A 80 EQKE 83 (94)
T ss_dssp CCSC
T ss_pred CcCC
Confidence 7654
No 175
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.68 E-value=1.3e-16 Score=116.90 Aligned_cols=73 Identities=18% Similarity=0.223 Sum_probs=67.6
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCceE
Q 013837 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAV 251 (435)
Q Consensus 173 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~l 251 (435)
.+..|||+||++.+||++|+++|.+||. |..+.+..++|||||+|.+.++|.+|+ .||+..+.|++|
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~------------V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I 73 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGP------------LVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLANTTI 73 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSC------------EEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCC------------EEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEE
Confidence 3567999999999999999999999997 677777889999999999999999999 699999999999
Q ss_pred EEcCCC
Q 013837 252 RVRRPT 257 (435)
Q Consensus 252 ~v~~~~ 257 (435)
.|..+.
T Consensus 74 ~V~~A~ 79 (89)
T 2wbr_A 74 FAESPS 79 (89)
T ss_dssp EEECCC
T ss_pred EEEECC
Confidence 999874
No 176
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.68 E-value=2.5e-16 Score=125.48 Aligned_cols=75 Identities=19% Similarity=0.207 Sum_probs=67.9
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceE-EEEEEcCHHHHHHHHHHhCCceeCC--eEEEEEEcc
Q 013837 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGY-GFCVYQDPAVTDIACAALNGLKMGD--KTLTVRRAT 372 (435)
Q Consensus 296 ~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~-afV~f~~~~~A~~Al~~l~g~~~~g--~~l~V~~a~ 372 (435)
.|||+||++.+|+++|+++|++||.|+.|.|+.. .|| |||+|.+.++|..|++.|||..|.| +.|+|.||+
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 4689999999999999999999999999998652 276 9999999999999999999999987 699999998
Q ss_pred CCCC
Q 013837 373 ASSG 376 (435)
Q Consensus 373 ~~~~ 376 (435)
++..
T Consensus 101 ~~~l 104 (124)
T 2e5i_A 101 PTRL 104 (124)
T ss_dssp CSCC
T ss_pred CCcc
Confidence 7653
No 177
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.68 E-value=1.4e-17 Score=128.38 Aligned_cols=80 Identities=18% Similarity=0.331 Sum_probs=66.6
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCce
Q 013837 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 250 (435)
Q Consensus 172 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~ 250 (435)
-...+|||+|||+++|+++|+++|..||.|..+. .+.+..++.++|||||+|.+.++|.+|+ .|||..|.|++
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~------i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~ 90 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAK------LIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKT 90 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEE------EEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeE------eeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 3467899999999999999999999999864421 1112224567899999999999999999 59999999999
Q ss_pred EEEcCCC
Q 013837 251 VRVRRPT 257 (435)
Q Consensus 251 l~v~~~~ 257 (435)
|.|.++.
T Consensus 91 l~V~~Ak 97 (99)
T 4fxv_A 91 IKVSYAR 97 (99)
T ss_dssp CEEEECC
T ss_pred EEEEEee
Confidence 9999875
No 178
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.68 E-value=1.9e-16 Score=134.87 Aligned_cols=83 Identities=25% Similarity=0.432 Sum_probs=79.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 013837 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (435)
Q Consensus 293 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~ 372 (435)
+.++|||+|||..+|+++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+|+..|||..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 35799999999999999999999999999999999998899999999999999999999999999999999999999998
Q ss_pred CCC
Q 013837 373 ASS 375 (435)
Q Consensus 373 ~~~ 375 (435)
+..
T Consensus 82 ~~~ 84 (168)
T 1b7f_A 82 PGG 84 (168)
T ss_dssp CCS
T ss_pred CCc
Confidence 654
No 179
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.67 E-value=1.2e-16 Score=120.50 Aligned_cols=76 Identities=17% Similarity=0.242 Sum_probs=70.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 013837 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (435)
Q Consensus 293 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~ 372 (435)
..++|||+|||..+|+++|+++|++| .|..+.|. .++|||||+|.+.++|.+|++.|||..|.|+.|+|.++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 45789999999999999999999999 99999884 468999999999999999999999999999999999996
Q ss_pred CCC
Q 013837 373 ASS 375 (435)
Q Consensus 373 ~~~ 375 (435)
...
T Consensus 77 ~~~ 79 (88)
T 1wg1_A 77 TDA 79 (88)
T ss_dssp CCC
T ss_pred CCc
Confidence 553
No 180
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.67 E-value=7.5e-17 Score=122.33 Aligned_cols=80 Identities=21% Similarity=0.199 Sum_probs=67.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHHHH-HhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHH-h-CCceecCce
Q 013837 174 ARRVYVGGLPPLANEQAIATFFSQVM-TAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMA-L-DGIIFEGVA 250 (435)
Q Consensus 174 ~~~l~V~nlp~~~t~~~l~~~f~~~G-~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~-l-~~~~~~g~~ 250 (435)
+++|||+|||+.+|+++|+++|+.|| .|..+. ++.+..++.++|||||+|.+.++|.+||+ + ++..+.|++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~------i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~ 74 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVR------LMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQK 74 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCC------SSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEE------EEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEE
Confidence 46899999999999999999999999 665532 24445567889999999999999999995 5 567899999
Q ss_pred EEEcCCCCC
Q 013837 251 VRVRRPTDY 259 (435)
Q Consensus 251 l~v~~~~~~ 259 (435)
|.|.++.+.
T Consensus 75 i~V~~a~~~ 83 (91)
T 2lxi_A 75 VSMHYSDPK 83 (91)
T ss_dssp EEEECCCSC
T ss_pred EEEEEcCCC
Confidence 999998654
No 181
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.2e-16 Score=121.44 Aligned_cols=77 Identities=19% Similarity=0.239 Sum_probs=68.2
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHH-hC--CceecC
Q 013837 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMA-LD--GIIFEG 248 (435)
Q Consensus 172 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~-l~--~~~~~g 248 (435)
...++|||+|||+.+|+++|+++|.+||. |.++.+..++|||||+|.+.++|..|++ ++ +..|.|
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~------------V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~G 81 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGK------------VTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRG 81 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCC------------EEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------EEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 46789999999999999999999999997 6667777789999999999999999995 65 478999
Q ss_pred ceEEEcCCCCCC
Q 013837 249 VAVRVRRPTDYN 260 (435)
Q Consensus 249 ~~l~v~~~~~~~ 260 (435)
++|.|.++....
T Consensus 82 r~l~V~~A~~~~ 93 (105)
T 1sjq_A 82 QPIYIQFSNHKE 93 (105)
T ss_dssp EECCBCCCSSSS
T ss_pred EEEEEEEcCCCC
Confidence 999999987543
No 182
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.65 E-value=1.4e-16 Score=126.56 Aligned_cols=74 Identities=22% Similarity=0.302 Sum_probs=66.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeE-----EE
Q 013837 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKT-----LT 367 (435)
Q Consensus 293 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~-----l~ 367 (435)
..++|||+|||+.+|+++|+++|++||.|+.|.|+.+ |||||+|.+.++|.+||+.|||..|.|+. |+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 3578999999999999999999999999999999765 89999999999999999999999999998 66
Q ss_pred EEEccC
Q 013837 368 VRRATA 373 (435)
Q Consensus 368 V~~a~~ 373 (435)
|..+.+
T Consensus 88 v~~~~~ 93 (115)
T 3beg_B 88 VKVDGP 93 (115)
T ss_dssp EEECC-
T ss_pred eccCCC
Confidence 666644
No 183
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.65 E-value=6e-17 Score=128.90 Aligned_cols=102 Identities=19% Similarity=0.181 Sum_probs=84.5
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCceE
Q 013837 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAV 251 (435)
Q Consensus 173 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~l 251 (435)
..++|||+|||..+|+++|+++|..||.|.. +.....+.++|||||+|.+.++|..|+ .|||..|.|+.|
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~---------v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 77 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQ---------IRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYL 77 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEE---------EEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE---------EEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 5689999999999999999999999998533 222223567899999999999999999 499999999999
Q ss_pred EEcCCCCCCcchhhcCCCCCCCCCccccccccccCCCCCCCCCCeEEEcCCCCCCCHHHHHHHHHhcCC
Q 013837 252 RVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVFVGGLPYYFTETQIKELLESFGT 320 (435)
Q Consensus 252 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~ 320 (435)
.|.++..... ..+++...++++|.++|++||.
T Consensus 78 ~v~~a~~~~~-------------------------------------~~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 78 VVLYYNANRA-------------------------------------FQKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp EEEECCHHHH-------------------------------------TTTSCHHHHHHHHHHHHHHHCC
T ss_pred EEEEecCChh-------------------------------------hhhhhHhHhHHHHHHHHHHhCC
Confidence 9998753210 0467777889999999999985
No 184
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.65 E-value=1.9e-16 Score=122.81 Aligned_cols=74 Identities=34% Similarity=0.455 Sum_probs=64.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecC-CCcEEEEEecCHHHHHHHH-HhCCceecCceEE
Q 013837 175 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINH-EKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVR 252 (435)
Q Consensus 175 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~-~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~l~ 252 (435)
++|||+|||..+|+++|+++|..||.| ..+.+.. ++|||||+|.+.++|.+|+ .|++..|.|+.|.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i------------~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 68 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPL------------RTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVR 68 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCC------------SEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCe------------EEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEE
Confidence 489999999999999999999999974 3333333 6999999999999999999 5999999999999
Q ss_pred EcCCCCCC
Q 013837 253 VRRPTDYN 260 (435)
Q Consensus 253 v~~~~~~~ 260 (435)
|.++....
T Consensus 69 V~~a~~~~ 76 (101)
T 2hvz_A 69 VELSTGMP 76 (101)
T ss_dssp EEESSSCC
T ss_pred EEEccCCC
Confidence 99987654
No 185
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.65 E-value=6.1e-16 Score=135.28 Aligned_cols=84 Identities=27% Similarity=0.521 Sum_probs=77.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013837 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (435)
Q Consensus 291 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~ 370 (435)
....++|||+|||..+|+++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||.. +|..|.|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKR 88 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeec
Confidence 34567999999999999999999999999999999999998999999999999999999999985 99999999999999
Q ss_pred ccCCC
Q 013837 371 ATASS 375 (435)
Q Consensus 371 a~~~~ 375 (435)
+....
T Consensus 89 ~~~~~ 93 (196)
T 1l3k_A 89 AVSRE 93 (196)
T ss_dssp CCC--
T ss_pred ccCcc
Confidence 97653
No 186
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.65 E-value=3e-16 Score=119.47 Aligned_cols=76 Identities=21% Similarity=0.150 Sum_probs=67.4
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCce--ecC
Q 013837 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGII--FEG 248 (435)
Q Consensus 172 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~--~~g 248 (435)
.++++|||+|||+.+|+++|.++|.+||. |.++.+..++|||||+|.+.++|.+|+ .|++.. |.|
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~------------V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~G 86 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGP------------ISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAG 86 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSC------------EEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEETT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCC------------EEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeCC
Confidence 46789999999999999999999999997 666777778999999999999999999 587764 789
Q ss_pred ceEEEcCCCCC
Q 013837 249 VAVRVRRPTDY 259 (435)
Q Consensus 249 ~~l~v~~~~~~ 259 (435)
++|.|.+++..
T Consensus 87 r~i~V~~S~~k 97 (100)
T 3r27_A 87 HPAFVNYSTSQ 97 (100)
T ss_dssp EEEEEEECSCS
T ss_pred cEEEEEecccc
Confidence 99999998654
No 187
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.64 E-value=9.1e-16 Score=118.97 Aligned_cols=82 Identities=21% Similarity=0.434 Sum_probs=74.0
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHHhCCceecCceE
Q 013837 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAV 251 (435)
Q Consensus 172 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~l 251 (435)
...++|||+|||+.+|+++|+++|..||.|.. . .+.+..++.++|||||+|.+.++|.+|++||+..|.|+.|
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~------~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l 87 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-L------AVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEI 87 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-C------CCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-E------EEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEE
Confidence 45789999999999999999999999999876 2 3677788899999999999999999999999999999999
Q ss_pred EEcCCCCCC
Q 013837 252 RVRRPTDYN 260 (435)
Q Consensus 252 ~v~~~~~~~ 260 (435)
.|.++....
T Consensus 88 ~V~~a~~~~ 96 (101)
T 1fj7_A 88 KLEKPKGRD 96 (101)
T ss_dssp EEECCSCCC
T ss_pred EEEEcCCCC
Confidence 999986543
No 188
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.64 E-value=6.2e-16 Score=116.67 Aligned_cols=75 Identities=17% Similarity=0.338 Sum_probs=62.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCce--eCCeEEEEE
Q 013837 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLK--MGDKTLTVR 369 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~--~~g~~l~V~ 369 (435)
.+..+|||+|||+.+|+++|+++|++||.|..|.|+.+ ++|||||+|.+.++|.+ |+|.. +.|+.|.|.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~ 79 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHIS 79 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEE
Confidence 45679999999999999999999999999999999875 68999999999999983 45554 569999999
Q ss_pred EccCCC
Q 013837 370 RATASS 375 (435)
Q Consensus 370 ~a~~~~ 375 (435)
+|.++.
T Consensus 80 ~a~~k~ 85 (89)
T 3d2w_A 80 NAEPKH 85 (89)
T ss_dssp ECC---
T ss_pred EcCCCC
Confidence 997653
No 189
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=3.7e-16 Score=123.96 Aligned_cols=78 Identities=27% Similarity=0.427 Sum_probs=68.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCC---CCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEE
Q 013837 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDT---GNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTV 368 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~t---g~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V 368 (435)
...++|||+|||+.+|+++|+++|++||.|. +.++.+..+ |.++|||||+|.+.++|.+||+.|+ .++|+.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 4467899999999999999999999999999 888888776 7999999999999999999999984 477777777
Q ss_pred EEcc
Q 013837 369 RRAT 372 (435)
Q Consensus 369 ~~a~ 372 (435)
..+.
T Consensus 83 ~~~~ 86 (114)
T 2dnl_A 83 VSSP 86 (114)
T ss_dssp ECCS
T ss_pred ccCC
Confidence 6553
No 190
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.62 E-value=1.3e-15 Score=133.81 Aligned_cols=78 Identities=17% Similarity=0.188 Sum_probs=72.1
Q ss_pred CCCeEEEcCCC-CCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 013837 293 GPDRVFVGGLP-YYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (435)
Q Consensus 293 ~~~~l~V~nLp-~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a 371 (435)
+.++|||+||| ..+|+++|+++|++||.|.+|.|+.+ .+|||||+|.+.++|.+||+.|||..|.|+.|.|.|+
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 35799999999 89999999999999999999999875 3799999999999999999999999999999999999
Q ss_pred cCCC
Q 013837 372 TASS 375 (435)
Q Consensus 372 ~~~~ 375 (435)
+.+.
T Consensus 78 ~~~~ 81 (205)
T 3tyt_A 78 KQPA 81 (205)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 7543
No 191
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.62 E-value=1.1e-16 Score=121.92 Aligned_cols=82 Identities=17% Similarity=0.281 Sum_probs=66.8
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHHHHHh--hcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCc---
Q 013837 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTA--IGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGI--- 244 (435)
Q Consensus 171 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i--~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~--- 244 (435)
...-.||||+|||+.+|+++|+++|++||.+ ..+. .+.+..++.++|||||+|.+.++|.+|+ .||+.
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~------i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~ 79 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIR------LIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPP 79 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEE------CCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSC
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEE------EEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCC
Confidence 4456799999999999999999999999963 2211 1233345778999999999999999999 58885
Q ss_pred -eecCceEEEcCCCC
Q 013837 245 -IFEGVAVRVRRPTD 258 (435)
Q Consensus 245 -~~~g~~l~v~~~~~ 258 (435)
.|+|++|.|.++..
T Consensus 80 ~~i~Gr~i~V~~Aks 94 (95)
T 2lkz_A 80 LKIDGKTIGVDFAKS 94 (95)
T ss_dssp EEETTEEEEEEECCC
T ss_pred ceECCEEEEEEEccC
Confidence 58999999998763
No 192
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.62 E-value=1.1e-15 Score=115.00 Aligned_cols=71 Identities=24% Similarity=0.541 Sum_probs=66.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhc----C-------CeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCcee
Q 013837 293 GPDRVFVGGLPYYFTETQIKELLESF----G-------TLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKM 361 (435)
Q Consensus 293 ~~~~l~V~nLp~~~te~~l~~~F~~~----G-------~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~ 361 (435)
..++|||+|||..+|+++|+++|+.| | .|..+.+..+ +|||||+|.+.++|.+|+ .|||..|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 45799999999999999999999999 8 8999988764 789999999999999999 8999999
Q ss_pred CCeEEEEEE
Q 013837 362 GDKTLTVRR 370 (435)
Q Consensus 362 ~g~~l~V~~ 370 (435)
.|+.|+|+.
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999999974
No 193
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.62 E-value=1.3e-15 Score=121.80 Aligned_cols=77 Identities=22% Similarity=0.338 Sum_probs=70.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 013837 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a 371 (435)
...++|||+|| .+|+++|+++|++||.|..|.|. .++|||||+|.+.++|.+||..|||..|.|+.|+|.|+
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 45679999996 69999999999999999999986 35899999999999999999999999999999999999
Q ss_pred cCCCC
Q 013837 372 TASSG 376 (435)
Q Consensus 372 ~~~~~ 376 (435)
.++..
T Consensus 109 ~~~~~ 113 (121)
T 2bz2_A 109 RKQPM 113 (121)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 87643
No 194
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.3e-15 Score=119.94 Aligned_cols=82 Identities=28% Similarity=0.403 Sum_probs=68.3
Q ss_pred hcccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecC
Q 013837 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEG 248 (435)
Q Consensus 170 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g 248 (435)
.....++|||+|||..+|+++|+++|..||.|.. +.......++|||||+|.+.++|.+|+ .||+..|.|
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~---------~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 88 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRD---------IDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDG 88 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEE---------EEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE---------EEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 3456789999999999999999999999998533 111223346899999999999999999 799999999
Q ss_pred ceEEEcCCCCCC
Q 013837 249 VAVRVRRPTDYN 260 (435)
Q Consensus 249 ~~l~v~~~~~~~ 260 (435)
+.|.|.++....
T Consensus 89 ~~l~V~~a~~~~ 100 (109)
T 1x4a_A 89 YRLRVEFPRSGR 100 (109)
T ss_dssp EECEEECCCCCC
T ss_pred eEEEEEEcccCC
Confidence 999999987643
No 195
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.62 E-value=2e-15 Score=128.15 Aligned_cols=80 Identities=23% Similarity=0.410 Sum_probs=74.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEccCC
Q 013837 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATAS 374 (435)
Q Consensus 295 ~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~~~ 374 (435)
++|||+|||..+|+++|+++|++||.|..|.|+.++ ++.++|||||+|.+.++|.+|+..|||..+.|+.|.|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 479999999999999999999999999999999986 4789999999999999999999999999999999999999765
Q ss_pred C
Q 013837 375 S 375 (435)
Q Consensus 375 ~ 375 (435)
.
T Consensus 80 ~ 80 (166)
T 3md3_A 80 Q 80 (166)
T ss_dssp C
T ss_pred C
Confidence 4
No 196
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.61 E-value=6.5e-15 Score=136.50 Aligned_cols=82 Identities=15% Similarity=0.364 Sum_probs=75.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEE
Q 013837 291 AEGPDRVFVGGLPYYFTETQIK----ELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTL 366 (435)
Q Consensus 291 ~~~~~~l~V~nLp~~~te~~l~----~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l 366 (435)
..+.++|||+|||..+|+++|+ ++|+.||.|..|.|++ +|.++|||||+|.+.++|.+||..|||..|.|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 3557899999999999999966 8999999999998886 57899999999999999999999999999999999
Q ss_pred EEEEccCCC
Q 013837 367 TVRRATASS 375 (435)
Q Consensus 367 ~V~~a~~~~ 375 (435)
+|.|+....
T Consensus 83 ~v~~a~~~~ 91 (282)
T 3pgw_A 83 RIQYAKTDS 91 (282)
T ss_pred EEEEeccCc
Confidence 999997654
No 197
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.61 E-value=4.7e-16 Score=123.69 Aligned_cols=85 Identities=16% Similarity=0.261 Sum_probs=69.4
Q ss_pred hcccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecC
Q 013837 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEG 248 (435)
Q Consensus 170 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g 248 (435)
.....++|||+|||..+|+++|+++|..||.|..+. ++.+...+.++|||||+|.+.++|.+|+ .||+..|.|
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 94 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAK------VFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGM 94 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEE------EEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE------EEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECC
Confidence 345678999999999999999999999999864411 1111124556799999999999999999 699999999
Q ss_pred ceEEEcCCCCCC
Q 013837 249 VAVRVRRPTDYN 260 (435)
Q Consensus 249 ~~l~v~~~~~~~ 260 (435)
+.|.|.++....
T Consensus 95 ~~l~V~~a~~~~ 106 (115)
T 2cpz_A 95 KRLKVQLKRSKN 106 (115)
T ss_dssp EECEEECCCCSC
T ss_pred EEEEEEEcCCCC
Confidence 999999987654
No 198
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.61 E-value=1.7e-15 Score=117.73 Aligned_cols=81 Identities=11% Similarity=0.205 Sum_probs=71.1
Q ss_pred CCCCeEEEcCC--CCCCC--------HHHHHHHHHhcCCeeEEEEeecCCC--CCcceEEEEEEcCHHHHHHHHHHhCCc
Q 013837 292 EGPDRVFVGGL--PYYFT--------ETQIKELLESFGTLHGFDLVKDRDT--GNSKGYGFCVYQDPAVTDIACAALNGL 359 (435)
Q Consensus 292 ~~~~~l~V~nL--p~~~t--------e~~l~~~F~~~G~v~~v~i~~~~~t--g~~~G~afV~f~~~~~A~~Al~~l~g~ 359 (435)
.++++|+|.|| |..+. +++|+++|++||.|+.|.|+++..+ +.++|||||+|.+.++|.+|+..|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 45789999999 33332 4799999999999999999988754 367999999999999999999999999
Q ss_pred eeCCeEEEEEEcc
Q 013837 360 KMGDKTLTVRRAT 372 (435)
Q Consensus 360 ~~~g~~l~V~~a~ 372 (435)
.|+|+.|.|.|+.
T Consensus 83 ~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 83 KFANRVVVTKYCD 95 (105)
T ss_dssp EETTEECEEEEEC
T ss_pred EeCCCEEEEEEeC
Confidence 9999999999984
No 199
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.61 E-value=1.4e-15 Score=135.04 Aligned_cols=82 Identities=27% Similarity=0.543 Sum_probs=74.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 013837 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (435)
Q Consensus 294 ~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~~ 373 (435)
.++|||+|||..+|+++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||+.|||..|.|+.|.|.++..
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 107 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCC
Confidence 46899999999999999999999999999999999988999999999999999999999999999999999999999865
Q ss_pred CC
Q 013837 374 SS 375 (435)
Q Consensus 374 ~~ 375 (435)
..
T Consensus 108 ~~ 109 (216)
T 2qfj_A 108 IG 109 (216)
T ss_dssp CG
T ss_pred cc
Confidence 53
No 200
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.61 E-value=1.3e-15 Score=119.29 Aligned_cols=78 Identities=18% Similarity=0.184 Sum_probs=66.0
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHHHH-HhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecC
Q 013837 171 TRHARRVYVGGLPPLANEQAIATFFSQVM-TAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEG 248 (435)
Q Consensus 171 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G-~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g 248 (435)
....++|||+|||+.+|+++|+++|..|| .|.. +.+....++|||||+|.+.++|.+|+ .|||..|.|
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~----------v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~G 94 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTF----------SSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRG 94 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSE----------EECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEE----------EEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 34568999999999999999999999999 6432 11212357999999999999999999 699999999
Q ss_pred ceEEEcCCCC
Q 013837 249 VAVRVRRPTD 258 (435)
Q Consensus 249 ~~l~v~~~~~ 258 (435)
+.|.|.++..
T Consensus 95 r~i~V~~a~~ 104 (111)
T 2jvr_A 95 SVITVERDDN 104 (111)
T ss_dssp EEEEEEESCC
T ss_pred eEEEEEECCC
Confidence 9999998754
No 201
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=2.1e-15 Score=115.98 Aligned_cols=78 Identities=21% Similarity=0.273 Sum_probs=68.4
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCc
Q 013837 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGV 249 (435)
Q Consensus 171 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~ 249 (435)
....++|||+|||+.+|+++|+++|..||.|. +.+.++.++|||||+|.+.++|.+|+ .|||..|.|+
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-----------~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 84 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-----------LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTD 84 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-----------SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSS
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-----------EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 34578999999999999999999999999851 23445688999999999999999999 6999999999
Q ss_pred eEEEcCCCCC
Q 013837 250 AVRVRRPTDY 259 (435)
Q Consensus 250 ~l~v~~~~~~ 259 (435)
.|.|.++...
T Consensus 85 ~l~V~~a~~~ 94 (97)
T 2e5j_A 85 TLRVALARQQ 94 (97)
T ss_dssp CCEEEECCCC
T ss_pred EEEEEEcCCC
Confidence 9999987654
No 202
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=6.3e-15 Score=115.90 Aligned_cols=81 Identities=25% Similarity=0.413 Sum_probs=72.4
Q ss_pred hhhcccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCcee
Q 013837 168 QQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIF 246 (435)
Q Consensus 168 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~ 246 (435)
.......++|||+|||..+|+++|+++|..||. |..+.+...+|||||+|.+.++|.+|+ .|++..|
T Consensus 19 ~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~------------i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 86 (109)
T 1x4g_A 19 NQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQ------------IMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTI 86 (109)
T ss_dssp HHSCSSCCEEEEECCSSCCCHHHHHHHHHHHSC------------EEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCC------------eEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEE
Confidence 344567889999999999999999999999997 667777777999999999999999999 6999999
Q ss_pred cCceEEEcCCCCCC
Q 013837 247 EGVAVRVRRPTDYN 260 (435)
Q Consensus 247 ~g~~l~v~~~~~~~ 260 (435)
.|+.|.|.++....
T Consensus 87 ~g~~l~v~~a~~~~ 100 (109)
T 1x4g_A 87 EGHVVKCYWGKESP 100 (109)
T ss_dssp TTEECEEECCCCCC
T ss_pred CCcEEEEEecCCCC
Confidence 99999999987654
No 203
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.60 E-value=3.2e-15 Score=112.43 Aligned_cols=84 Identities=46% Similarity=0.825 Sum_probs=72.3
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHHhCCceecCceE
Q 013837 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAV 251 (435)
Q Consensus 172 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~l 251 (435)
...++|||+|||+.+|+++|+++|..||.+.+... .+...|..+.+..++|||||+|.+.++|.+|+.||+..|.|+.|
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~-~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~~l~g~~~~g~~l 82 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQ-APGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSL 82 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCS-SSSCSEEEEEECSSSSEEEEEESSHHHHHHHGGGTTCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhccccc-CCCCcceEEEecCCCcEEEEEcCCHHHHHHHHhcCCCEECCeEE
Confidence 46789999999999999999999999976544221 22335888999999999999999999999999999999999999
Q ss_pred EEcCC
Q 013837 252 RVRRP 256 (435)
Q Consensus 252 ~v~~~ 256 (435)
.|.++
T Consensus 83 ~V~rp 87 (87)
T 2hzc_A 83 KIRRP 87 (87)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 99863
No 204
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.4e-15 Score=117.07 Aligned_cols=77 Identities=17% Similarity=0.171 Sum_probs=67.7
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHH-h--CCceecC
Q 013837 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMA-L--DGIIFEG 248 (435)
Q Consensus 172 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~-l--~~~~~~g 248 (435)
.+.++|||+|||+.+|+++|+++|.+||. |..+.+...+|||||+|.+.++|..|++ | ++..|.|
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~------------v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~G 80 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGK------------VTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRN 80 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSC------------EEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------EEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 45789999999999999999999999997 5566666779999999999999999994 4 6788999
Q ss_pred ceEEEcCCCCCC
Q 013837 249 VAVRVRRPTDYN 260 (435)
Q Consensus 249 ~~l~v~~~~~~~ 260 (435)
++|.|.++....
T Consensus 81 r~l~V~~a~~~~ 92 (101)
T 2cq1_A 81 QPIYIQYSNHKE 92 (101)
T ss_dssp EECEEEECSCSS
T ss_pred cEEEEEEcCccc
Confidence 999999987543
No 205
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.60 E-value=1.7e-15 Score=117.36 Aligned_cols=76 Identities=22% Similarity=0.400 Sum_probs=67.9
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCc
Q 013837 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGV 249 (435)
Q Consensus 171 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~ 249 (435)
....++|||+|||..+|+++|+++|..||. |..+.+..++|||||+|.+.++|..|+ .|||..|.|+
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~------------i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 91 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGF------------ILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGR 91 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSC------------CSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCC------------EEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 345689999999999999999999999997 445555688999999999999999999 6999999999
Q ss_pred eEEEcCCCC
Q 013837 250 AVRVRRPTD 258 (435)
Q Consensus 250 ~l~v~~~~~ 258 (435)
.|.|.++.+
T Consensus 92 ~l~V~~a~~ 100 (101)
T 2la4_A 92 NLRTGWGKE 100 (101)
T ss_dssp ECCCCBCCC
T ss_pred EEEEEeccC
Confidence 999998764
No 206
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=4.7e-16 Score=119.66 Aligned_cols=77 Identities=22% Similarity=0.235 Sum_probs=68.0
Q ss_pred ccCCeEEEcCCCC-CCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCC--ceec
Q 013837 172 RHARRVYVGGLPP-LANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDG--IIFE 247 (435)
Q Consensus 172 ~~~~~l~V~nlp~-~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~--~~~~ 247 (435)
.+.++|||+|||+ .+|+++|+++|.+||. |.++.+..++|||||+|.+.++|..|+ .|++ ..|.
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~------------V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~ 80 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGV------------ISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVF 80 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSC------------EEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEET
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCC------------EEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceEC
Confidence 3678999999999 9999999999999997 677777778999999999999999999 5765 5699
Q ss_pred CceEEEcCCCCCC
Q 013837 248 GVAVRVRRPTDYN 260 (435)
Q Consensus 248 g~~l~v~~~~~~~ 260 (435)
|++|.|.++....
T Consensus 81 Gr~l~V~~a~~~~ 93 (102)
T 1x4d_A 81 GKPVRVHLSQKYK 93 (102)
T ss_dssp TEECEEEEECCCT
T ss_pred CcEEEEEECCCCC
Confidence 9999999987543
No 207
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=7.1e-16 Score=116.33 Aligned_cols=78 Identities=19% Similarity=0.424 Sum_probs=66.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 013837 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a 371 (435)
...++|||+|||..+|+++|+++|++||.|..|.|+.+ ++|||||+|.+.++|++|+. .+..+.|+.|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEec
Confidence 34579999999999999999999999999999999865 58999999999999986433 235569999999999
Q ss_pred cCCCC
Q 013837 372 TASSG 376 (435)
Q Consensus 372 ~~~~~ 376 (435)
.++..
T Consensus 76 ~~~~~ 80 (88)
T 1wf0_A 76 EPKHN 80 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87654
No 208
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.60 E-value=2.9e-15 Score=115.02 Aligned_cols=77 Identities=14% Similarity=0.327 Sum_probs=66.4
Q ss_pred hhhcccCCeEEEcCCCC-CCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCce
Q 013837 168 QQATRHARRVYVGGLPP-LANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGII 245 (435)
Q Consensus 168 ~~~~~~~~~l~V~nlp~-~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~ 245 (435)
.......++|||+|||. .+++++|+++|..||. |..+.+ .+|||||+|.+.++|.+|+ .|||..
T Consensus 16 ~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~------------v~~v~i--~~g~afV~f~~~~~A~~Ai~~l~g~~ 81 (97)
T 2xnq_A 16 PRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGH------------IMQINI--KNAFGFIQFDNPQSVRDAIEXESQEM 81 (97)
T ss_dssp ---CCTTCEEEEESCCSSCCCHHHHHHHHGGGSC------------EEEEEE--CSSEEEEEESSHHHHHHHHHHHTTSE
T ss_pred cCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCC------------EEEEEE--eCCEEEEEECCHHHHHHHHHHcCCCE
Confidence 34456789999999998 9999999999999997 555555 4899999999999999999 599999
Q ss_pred ecCceEEEcCCCC
Q 013837 246 FEGVAVRVRRPTD 258 (435)
Q Consensus 246 ~~g~~l~v~~~~~ 258 (435)
+.|+.|.|.++..
T Consensus 82 ~~g~~l~V~~a~~ 94 (97)
T 2xnq_A 82 NFGKKLILEVSSS 94 (97)
T ss_dssp ETTEECEEEECCC
T ss_pred ECCEEEEEEecCC
Confidence 9999999998754
No 209
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.60 E-value=1.2e-15 Score=122.71 Aligned_cols=81 Identities=15% Similarity=0.212 Sum_probs=67.9
Q ss_pred ccCCeEEEcCCCCCCCHHHHH----HHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCcee
Q 013837 172 RHARRVYVGGLPPLANEQAIA----TFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIF 246 (435)
Q Consensus 172 ~~~~~l~V~nlp~~~t~~~l~----~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~ 246 (435)
.+.++|||+|||+.+++++|+ ++|++||.|+. |.....+.++|||||+|.+.++|..|+ .|||..|
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~---------v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l 97 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILD---------IVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPF 97 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEE---------EEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEE---------EEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEe
Confidence 356899999999999999876 69999998643 222234578999999999999999999 6999999
Q ss_pred cCceEEEcCCCCCCc
Q 013837 247 EGVAVRVRRPTDYNP 261 (435)
Q Consensus 247 ~g~~l~v~~~~~~~~ 261 (435)
.|++|.|.|+.....
T Consensus 98 ~gr~l~V~~a~~~~~ 112 (127)
T 2a3j_A 98 QGNPLVITFSETPQS 112 (127)
T ss_dssp TTSCCEEEECCCCCH
T ss_pred CCCEEEEEEccCcch
Confidence 999999999876543
No 210
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=1.7e-15 Score=117.39 Aligned_cols=77 Identities=18% Similarity=0.185 Sum_probs=66.9
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHH-hCC--ceecC
Q 013837 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMA-LDG--IIFEG 248 (435)
Q Consensus 172 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~-l~~--~~~~g 248 (435)
.+.++|||+|||+.+++++|+++|.+||. |..+.+..++|||||+|.+.++|.+|++ |++ ..|.|
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~------------V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~G 80 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGT------------ICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAG 80 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSC------------EEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCC------------EEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 45689999999999999999999999997 5566666789999999999999999994 654 56999
Q ss_pred ceEEEcCCCCCC
Q 013837 249 VAVRVRRPTDYN 260 (435)
Q Consensus 249 ~~l~v~~~~~~~ 260 (435)
++|.|.++....
T Consensus 81 r~l~V~~a~~~~ 92 (104)
T 1wex_A 81 QQAFFNYSTSKR 92 (104)
T ss_dssp SBCEEEECSSSS
T ss_pred EEEEEEEccCcc
Confidence 999999987543
No 211
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=6.2e-15 Score=114.67 Aligned_cols=79 Identities=27% Similarity=0.394 Sum_probs=67.8
Q ss_pred hcccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe----cCCCcEEEEEecCHHHHHHHHH-hCCc
Q 013837 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI----NHEKKFAFVEMRTVEEASNAMA-LDGI 244 (435)
Q Consensus 170 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~----~~~~g~afv~f~~~~~a~~a~~-l~~~ 244 (435)
.....++|||+|||..+|+++|+++|..||.|. .+.+ ..++|||||+|.+.++|.+|+. |++.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~------------~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 78 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCK------------SCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGR 78 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEE------------EEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEe------------EEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCC
Confidence 345678999999999999999999999999853 3333 2367999999999999999994 9999
Q ss_pred eecCceEEEcCCCCCC
Q 013837 245 IFEGVAVRVRRPTDYN 260 (435)
Q Consensus 245 ~~~g~~l~v~~~~~~~ 260 (435)
.|.|+.|.|.++....
T Consensus 79 ~~~g~~l~V~~a~~~~ 94 (103)
T 2cqi_A 79 KILGKEVKVNWATTPS 94 (103)
T ss_dssp EETTEEEEEEECCCTT
T ss_pred CcCCCeEEEEECCCCc
Confidence 9999999999987643
No 212
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.59 E-value=3.4e-15 Score=118.15 Aligned_cols=80 Identities=14% Similarity=0.118 Sum_probs=70.8
Q ss_pred CCCeEEEcCCCC--C---CCHHHHHHHHHhcCCeeEEEEeecCC----CCCcceEEEEEEcCHHHHHHHHHHhCCceeCC
Q 013837 293 GPDRVFVGGLPY--Y---FTETQIKELLESFGTLHGFDLVKDRD----TGNSKGYGFCVYQDPAVTDIACAALNGLKMGD 363 (435)
Q Consensus 293 ~~~~l~V~nLp~--~---~te~~l~~~F~~~G~v~~v~i~~~~~----tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g 363 (435)
++++|+|.||-. . -.++||+++|++||.|..|.|+.+.. ++.++|||||+|.+.++|.+|+..|||.+|+|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 567999999942 2 24689999999999999999999864 45678999999999999999999999999999
Q ss_pred eEEEEEEcc
Q 013837 364 KTLTVRRAT 372 (435)
Q Consensus 364 ~~l~V~~a~ 372 (435)
+.|.|.|+.
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999999984
No 213
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=4.7e-15 Score=117.84 Aligned_cols=83 Identities=16% Similarity=0.268 Sum_probs=71.9
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCce
Q 013837 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 250 (435)
Q Consensus 172 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~ 250 (435)
...++|||+|||..+|+++|+++|..||.|..+. ..+...++.++|||||+|.+.++|..|+ .|++..|.|+.
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~------~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 96 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPP------IQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKI 96 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSC------CEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceE------EEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 4568999999999999999999999999975432 2445557888999999999999999999 59999999999
Q ss_pred EEEcCCCCCC
Q 013837 251 VRVRRPTDYN 260 (435)
Q Consensus 251 l~v~~~~~~~ 260 (435)
|.|.++....
T Consensus 97 l~v~~a~~~~ 106 (115)
T 2cpx_A 97 LVIEFGKNKK 106 (115)
T ss_dssp CEEEECCCCS
T ss_pred EEEEEccCCC
Confidence 9999987654
No 214
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.59 E-value=1.9e-15 Score=118.72 Aligned_cols=81 Identities=10% Similarity=0.011 Sum_probs=67.5
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCceE
Q 013837 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAV 251 (435)
Q Consensus 173 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~l 251 (435)
+.++|||+|||+.+|+++|+++|.+||.|..+. ++.+..++.++|||||+|.+.++|.+|+ .|||..|.|+.|
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~------i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i 78 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVE------ILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNII 78 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEE------EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEE------EEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 467999999999999999999999999864421 1122223667899999999999999999 599999999999
Q ss_pred EEcCCCCC
Q 013837 252 RVRRPTDY 259 (435)
Q Consensus 252 ~v~~~~~~ 259 (435)
.|.++...
T Consensus 79 ~V~~a~~~ 86 (110)
T 3s8s_A 79 HAQLDIKG 86 (110)
T ss_dssp EEEECSTT
T ss_pred EEEECCCC
Confidence 99987543
No 215
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=8.7e-15 Score=115.57 Aligned_cols=82 Identities=17% Similarity=0.292 Sum_probs=70.8
Q ss_pred CCCCCCeEEEcCCCCCCC-----------HHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCC
Q 013837 290 GAEGPDRVFVGGLPYYFT-----------ETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNG 358 (435)
Q Consensus 290 ~~~~~~~l~V~nLp~~~t-----------e~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g 358 (435)
.+.+.++|+|.||....+ +++|+++|++||.|..|.| .++ .++|||||+|.+.++|.+|+..|||
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 445678999999954432 6899999999999999965 553 3799999999999999999999999
Q ss_pred ceeCCeEEEEEEccCCC
Q 013837 359 LKMGDKTLTVRRATASS 375 (435)
Q Consensus 359 ~~~~g~~l~V~~a~~~~ 375 (435)
..|.|+.|.|.|+.++.
T Consensus 87 ~~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 87 RWFGGRQITAQAWDGTT 103 (112)
T ss_dssp CEETTEECEEEECCSCC
T ss_pred CEECCcEEEEEEeCCCC
Confidence 99999999999997764
No 216
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=7e-16 Score=120.55 Aligned_cols=84 Identities=25% Similarity=0.379 Sum_probs=68.4
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCc
Q 013837 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGV 249 (435)
Q Consensus 171 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~ 249 (435)
....++|||+|||..+|+++|+++|..||.|..+.+ +.+..++.++|||||+|.+.++|.+|+ .|++..|.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i------~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 85 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHM------PKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGK 85 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEEC------CBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE------EecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 356789999999999999999999999998543211 111123456799999999999999999 5999999999
Q ss_pred eEEEcCCCCCC
Q 013837 250 AVRVRRPTDYN 260 (435)
Q Consensus 250 ~l~v~~~~~~~ 260 (435)
.|.|.++....
T Consensus 86 ~l~v~~a~~~~ 96 (105)
T 1x5u_A 86 PIRVNKASAHN 96 (105)
T ss_dssp BCEEEETTTTS
T ss_pred EEEEEECCCCC
Confidence 99999886543
No 217
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.59 E-value=6.5e-16 Score=115.73 Aligned_cols=79 Identities=23% Similarity=0.351 Sum_probs=65.4
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCce
Q 013837 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 250 (435)
Q Consensus 172 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~ 250 (435)
...++|||+|||..+++++|+++|..||.|..+.+ +.+..++.++|||||+|.+.++|..|+ .|||..|.|++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i------~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 78 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQI------PLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRT 78 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEEC------CEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEE------EECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 46789999999999999999999999998543110 111123456899999999999999999 69999999999
Q ss_pred EEEcCC
Q 013837 251 VRVRRP 256 (435)
Q Consensus 251 l~v~~~ 256 (435)
|.|.++
T Consensus 79 l~v~~a 84 (85)
T 3mdf_A 79 IRVNLA 84 (85)
T ss_dssp CEEEEC
T ss_pred EEEEEc
Confidence 999876
No 218
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=9.9e-16 Score=120.92 Aligned_cols=77 Identities=18% Similarity=0.217 Sum_probs=66.3
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhC--CceecC
Q 013837 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALD--GIIFEG 248 (435)
Q Consensus 172 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~--~~~~~g 248 (435)
.+.++|||+|||+.+|+++|+++|.+||.| .++.+..++|||||+|.+.++|.+|+ .++ +..|.|
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V------------~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~G 96 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKV------------TNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRG 96 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCC------------CEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCE------------EEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 457899999999999999999999999984 44555556999999999999999999 476 468999
Q ss_pred ceEEEcCCCCCC
Q 013837 249 VAVRVRRPTDYN 260 (435)
Q Consensus 249 ~~l~v~~~~~~~ 260 (435)
++|.|.++....
T Consensus 97 r~l~V~~a~~k~ 108 (119)
T 2ad9_A 97 QPIYIQFSNHKE 108 (119)
T ss_dssp BCCEEEECSSSS
T ss_pred eEEEEEEccCCC
Confidence 999999987543
No 219
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=4.1e-15 Score=114.29 Aligned_cols=76 Identities=21% Similarity=0.349 Sum_probs=68.6
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceec--C
Q 013837 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFE--G 248 (435)
Q Consensus 172 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~--g 248 (435)
...++|||+|||..+|+++|+++|..||. |..+.+...+|||||+|.+.++|.+|+ .||+..|. |
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~------------v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g 82 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGS------------IRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPD 82 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSC------------EEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCSSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------eeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeCCCC
Confidence 35689999999999999999999999987 666777777999999999999999999 59999999 9
Q ss_pred ceEEEcCCCCC
Q 013837 249 VAVRVRRPTDY 259 (435)
Q Consensus 249 ~~l~v~~~~~~ 259 (435)
+.|.|.++...
T Consensus 83 ~~l~V~~a~~~ 93 (97)
T 1why_A 83 RRLRVDFAKSG 93 (97)
T ss_dssp CBCEEEECCCC
T ss_pred cEEEEEECCCC
Confidence 99999998754
No 220
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.58 E-value=2.4e-15 Score=133.43 Aligned_cols=78 Identities=21% Similarity=0.385 Sum_probs=70.4
Q ss_pred CCCCeEEEcCCCCCC---------CHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCcee-
Q 013837 292 EGPDRVFVGGLPYYF---------TETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKM- 361 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~---------te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~- 361 (435)
...++|||+||+..+ ++++|+++|++||.|+.|.|+.. +|||||+|.+.++|+.|+++|+|..|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l~ 205 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTLL 205 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCCC
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEEe
Confidence 456799999999998 79999999999999999999864 79999999999999999999999999
Q ss_pred -----------CCeEEEEEEccCCC
Q 013837 362 -----------GDKTLTVRRATASS 375 (435)
Q Consensus 362 -----------~g~~l~V~~a~~~~ 375 (435)
.|+.|.|.||+..+
T Consensus 206 ~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 206 LPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CTTSTTGGGGGGSCCCEEEECC---
T ss_pred ccccccccccCCCCEEEEEEccCCC
Confidence 89999999997654
No 221
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.58 E-value=6.8e-15 Score=127.81 Aligned_cols=78 Identities=22% Similarity=0.260 Sum_probs=72.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 013837 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (435)
Q Consensus 294 ~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~~ 373 (435)
.++|||+|||..+|+++|.++|++||.|..|.|+.+. +|.++|||||+|.+.++|.+||..+ +..|+|+.|.|.++..
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 4689999999999999999999999999999999986 5899999999999999999999855 5699999999999854
No 222
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=2.3e-15 Score=112.71 Aligned_cols=74 Identities=22% Similarity=0.364 Sum_probs=67.1
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHH-h-CCceecC
Q 013837 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMA-L-DGIIFEG 248 (435)
Q Consensus 171 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~-l-~~~~~~g 248 (435)
....++|||+|||..+|+++|+++|..||. |..+.+..++|||||+|.+.++|..|+. | ++..+.|
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~------------i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g 76 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGE------------IRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNG 76 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSC------------EEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEETT
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCC------------EeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeECC
Confidence 346789999999999999999999999987 6667777789999999999999999995 8 9999999
Q ss_pred ceEEEcCC
Q 013837 249 VAVRVRRP 256 (435)
Q Consensus 249 ~~l~v~~~ 256 (435)
++|.|.|+
T Consensus 77 ~~l~v~~a 84 (85)
T 2ytc_A 77 RRLNVKWG 84 (85)
T ss_dssp EECCEEEC
T ss_pred CEEEEEec
Confidence 99999876
No 223
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.58 E-value=3.3e-15 Score=117.07 Aligned_cols=77 Identities=23% Similarity=0.311 Sum_probs=66.3
Q ss_pred hhcccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceec
Q 013837 169 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFE 247 (435)
Q Consensus 169 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~ 247 (435)
......++|||+|||..+|+++|+++|..||.|. .+.+. +|||||+|.+.++|.+|+ .|||..|.
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~------------~v~i~--kg~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMK------------EVKIL--NGFAFVEFEEAESAAKAIEEVHGKSFA 91 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCC------------EEEEE--TTEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEE------------EEEEE--CCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 4456789999999999999999999999999853 33332 899999999999999999 59999999
Q ss_pred CceEEEcCCCCC
Q 013837 248 GVAVRVRRPTDY 259 (435)
Q Consensus 248 g~~l~v~~~~~~ 259 (435)
|+.|.|.++...
T Consensus 92 g~~l~V~~a~~~ 103 (108)
T 2jvo_A 92 NQPLEVVYSKLP 103 (108)
T ss_dssp TEECEEESCSCC
T ss_pred CeEEEEEEecCC
Confidence 999999998654
No 224
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=5e-15 Score=113.35 Aligned_cols=82 Identities=23% Similarity=0.320 Sum_probs=66.2
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCc
Q 013837 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGV 249 (435)
Q Consensus 171 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~ 249 (435)
....++|||+|||..+|+++|+++|..||.|..+. .+.+..++.++|||||+|.+.++|.+|+ .||+..|.|+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~------i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 85 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVS------IVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGR 85 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEE------EEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEE------EEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 34578999999999999999999999999853310 0111112456799999999999999999 5999999999
Q ss_pred eEEEcCCCC
Q 013837 250 AVRVRRPTD 258 (435)
Q Consensus 250 ~l~v~~~~~ 258 (435)
+|.|.++..
T Consensus 86 ~l~v~~a~~ 94 (95)
T 2cqc_A 86 RIRVSGPSS 94 (95)
T ss_dssp EEEEECCSC
T ss_pred EEEEEecCC
Confidence 999998753
No 225
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.1e-15 Score=117.38 Aligned_cols=82 Identities=15% Similarity=0.304 Sum_probs=68.6
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcC-CCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHH-hCCceecCce
Q 013837 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGG-NSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMA-LDGIIFEGVA 250 (435)
Q Consensus 173 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~-~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~-l~~~~~~g~~ 250 (435)
..++|||+|||..+|+++|+++|..||.|..+ . ++.+..++.++|||||+|.+.++|.+|+. ||+..|.|++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~------i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 77 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPK------IMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRP 77 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCE------ECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE------EEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 56899999999999999999999999987542 1 11111345678999999999999999995 9999999999
Q ss_pred EEEcCCCCCC
Q 013837 251 VRVRRPTDYN 260 (435)
Q Consensus 251 l~v~~~~~~~ 260 (435)
|.|.++....
T Consensus 78 l~v~~a~~~~ 87 (96)
T 1x5t_A 78 ITVSYAFKKD 87 (96)
T ss_dssp CEEEESCCCC
T ss_pred EEEEEecccC
Confidence 9999987554
No 226
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.58 E-value=7.6e-16 Score=112.39 Aligned_cols=75 Identities=15% Similarity=0.280 Sum_probs=64.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHHhCCceecCceEEEcC
Q 013837 176 RVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRR 255 (435)
Q Consensus 176 ~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~l~v~~ 255 (435)
+|||+|||+.+|+++|+++|..||.|..+.+ +.+..++.++|||||+|.+.++|.+|+++++..|.|+.|.|.+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i------~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~ 74 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAML------MFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKK 74 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECC------CBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEEC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEE------EecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEe
Confidence 5999999999999999999999998755322 2222356678999999999999999999999999999999987
Q ss_pred C
Q 013837 256 P 256 (435)
Q Consensus 256 ~ 256 (435)
+
T Consensus 75 A 75 (75)
T 2mss_A 75 A 75 (75)
T ss_dssp C
T ss_pred C
Confidence 4
No 227
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=9.2e-15 Score=112.05 Aligned_cols=76 Identities=17% Similarity=0.167 Sum_probs=66.1
Q ss_pred ccCCeEEEcCCCCCCCHHHHH----HHHHHHHHhhcCCCCCCCCceEEEEecCC---CcEEEEEecCHHHHHHHH-HhCC
Q 013837 172 RHARRVYVGGLPPLANEQAIA----TFFSQVMTAIGGNSAGPGDAVVNVYINHE---KKFAFVEMRTVEEASNAM-ALDG 243 (435)
Q Consensus 172 ~~~~~l~V~nlp~~~t~~~l~----~~f~~~G~i~~~~~~~~~~~v~~~~~~~~---~g~afv~f~~~~~a~~a~-~l~~ 243 (435)
...++|||+|||+.+++++|+ ++|..||. |..+.+..+ +|||||+|.+.++|.+|+ .|||
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~------------v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g 74 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGK------------VKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHR 74 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSC------------EEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCc------------EEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCC
Confidence 356799999999999999999 99999997 455555432 899999999999999999 5999
Q ss_pred ceecCceEEEcCCCCC
Q 013837 244 IIFEGVAVRVRRPTDY 259 (435)
Q Consensus 244 ~~~~g~~l~v~~~~~~ 259 (435)
..|.|+.|.|.++...
T Consensus 75 ~~~~gr~l~V~~a~~~ 90 (96)
T 2dgx_A 75 YKIGSKKILVSLATGA 90 (96)
T ss_dssp EEETTEEEEEEECCCS
T ss_pred CEECCeEEEEEEcCCC
Confidence 9999999999988654
No 228
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=4.5e-15 Score=114.56 Aligned_cols=78 Identities=18% Similarity=0.403 Sum_probs=68.2
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe------cCCCcEEEEEecCHHHHHHHHHhCCc
Q 013837 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI------NHEKKFAFVEMRTVEEASNAMALDGI 244 (435)
Q Consensus 171 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~------~~~~g~afv~f~~~~~a~~a~~l~~~ 244 (435)
....++|||+|||..+|+++|+++|..||.| ..+.+ +.++|||||+|.+.++|.+|+++++.
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i------------~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~ 74 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVV------------TEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFH 74 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCE------------EEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCe------------EEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCC
Confidence 3467899999999999999999999999974 34433 45689999999999999999999999
Q ss_pred eecCceEEEcCCCCCC
Q 013837 245 IFEGVAVRVRRPTDYN 260 (435)
Q Consensus 245 ~~~g~~l~v~~~~~~~ 260 (435)
.|.|+.|.|.++....
T Consensus 75 ~~~g~~l~V~~a~~~~ 90 (99)
T 2dgs_A 75 DIMGKKVEVKRAEPRD 90 (99)
T ss_dssp BSSSCBCEEEECCCCC
T ss_pred EECCeEEEEEECCCCc
Confidence 9999999999887553
No 229
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.2e-14 Score=112.14 Aligned_cols=77 Identities=25% Similarity=0.386 Sum_probs=67.1
Q ss_pred hcccCCeEEEcCCCCCCCHHHHHHHHHHH--HHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHH-hCCcee
Q 013837 170 ATRHARRVYVGGLPPLANEQAIATFFSQV--MTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMA-LDGIIF 246 (435)
Q Consensus 170 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~--G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~-l~~~~~ 246 (435)
.....++|||+|||+.+|+++|+++|..| |. |..+.+ .+|||||+|.+.++|.+|+. ||+..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~------------v~~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~ 76 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGA------------VERVKK--IRDYAFVHFSNREDAVEAMKALNGKVL 76 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTC------------EEEEEE--CSSEEEEEESSHHHHHHHHHHHSSEEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcc------------eEEEEE--eCCeEEEEeCCHHHHHHHHHHhCCCEe
Confidence 34567899999999999999999999999 65 555554 47899999999999999994 999999
Q ss_pred cCceEEEcCCCCCC
Q 013837 247 EGVAVRVRRPTDYN 260 (435)
Q Consensus 247 ~g~~l~v~~~~~~~ 260 (435)
.|+.|.|.++....
T Consensus 77 ~g~~l~v~~a~~~~ 90 (99)
T 2cpd_A 77 DGSPIEVTLAKPVD 90 (99)
T ss_dssp TTEEEEEECCCCCC
T ss_pred CCcEEEEEECCCCC
Confidence 99999999987643
No 230
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.57 E-value=7.9e-15 Score=125.61 Aligned_cols=82 Identities=24% Similarity=0.478 Sum_probs=75.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCC--CcceEEEEEEcCHHHHHHHHHHhCCceeC---CeEEEE
Q 013837 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTG--NSKGYGFCVYQDPAVTDIACAALNGLKMG---DKTLTV 368 (435)
Q Consensus 294 ~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg--~~~G~afV~f~~~~~A~~Al~~l~g~~~~---g~~l~V 368 (435)
.++|||+|||..+|+++|+++|++||.|..|.|+.++.+| .++|||||+|.+.++|.+|++.|||..+. ++.|.|
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~ 82 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQM 82 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEE
Confidence 4689999999999999999999999999999999998876 89999999999999999999999998876 688899
Q ss_pred EEccCCC
Q 013837 369 RRATASS 375 (435)
Q Consensus 369 ~~a~~~~ 375 (435)
.++....
T Consensus 83 ~~~~~~~ 89 (175)
T 3nmr_A 83 KPADSEK 89 (175)
T ss_dssp EECGGGC
T ss_pred ccccccc
Confidence 8886554
No 231
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.1e-15 Score=118.74 Aligned_cols=83 Identities=22% Similarity=0.332 Sum_probs=69.3
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCce
Q 013837 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 250 (435)
Q Consensus 172 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~ 250 (435)
...++|||+|||..+|+++|+++|..||.|..+.+ +.+..++.++|||||+|.+.++|.+|+ .||+..|.|+.
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i------~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 83 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQI------PLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRT 83 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEEC------CCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEE------EecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 46789999999999999999999999998644221 112233567899999999999999999 69999999999
Q ss_pred EEEcCCCCCC
Q 013837 251 VRVRRPTDYN 260 (435)
Q Consensus 251 l~v~~~~~~~ 260 (435)
|.|.++....
T Consensus 84 l~V~~a~~~~ 93 (102)
T 2cqb_A 84 IRVNLAKPMR 93 (102)
T ss_dssp EEEEECCCCC
T ss_pred EEEEeCCCCC
Confidence 9999987654
No 232
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=2.8e-15 Score=118.17 Aligned_cols=76 Identities=21% Similarity=0.153 Sum_probs=69.2
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCc
Q 013837 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGV 249 (435)
Q Consensus 171 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~ 249 (435)
....++|||+|||+.+|+++|+++|..||. |..+.+..++|||||+|.+.++|..|+ .|||..|.|+
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~------------i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 74 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRFGS------------LGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHV 74 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTTSC------------EEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------EEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCe
Confidence 445789999999999999999999999997 667777789999999999999999999 6999999999
Q ss_pred eEEEcCCCC
Q 013837 250 AVRVRRPTD 258 (435)
Q Consensus 250 ~l~v~~~~~ 258 (435)
.|.|.|+..
T Consensus 75 ~l~V~~a~~ 83 (111)
T 1whx_A 75 PLYLEWAPI 83 (111)
T ss_dssp BCEEEEEET
T ss_pred EEEEEECCC
Confidence 999998754
No 233
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=7.8e-15 Score=114.10 Aligned_cols=79 Identities=24% Similarity=0.365 Sum_probs=68.0
Q ss_pred hcccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEec----CCCcEEEEEecCHHHHHHHH-HhCCc
Q 013837 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN----HEKKFAFVEMRTVEEASNAM-ALDGI 244 (435)
Q Consensus 170 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~----~~~g~afv~f~~~~~a~~a~-~l~~~ 244 (435)
.....++|||+|||..+|+++|+++|..||.| ..+.+. .++|||||+|.+.++|.+|+ .|++.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v------------~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 78 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKI------------LDVEIIFNERGSKGFGFVTFENSADADRAREKLHGT 78 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCE------------EEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCe------------EEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 34567899999999999999999999999974 344332 35899999999999999999 59999
Q ss_pred eecCceEEEcCCCCCC
Q 013837 245 IFEGVAVRVRRPTDYN 260 (435)
Q Consensus 245 ~~~g~~l~v~~~~~~~ 260 (435)
.|.|+.|.|.++....
T Consensus 79 ~~~g~~l~v~~a~~~~ 94 (103)
T 2cq3_A 79 VVEGRKIEVNNATARV 94 (103)
T ss_dssp EETTEECEEEECCSSC
T ss_pred EECCEEEEEEEcccCC
Confidence 9999999999987654
No 234
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.57 E-value=1.3e-15 Score=115.30 Aligned_cols=80 Identities=15% Similarity=0.157 Sum_probs=61.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHHH--HhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCceE
Q 013837 175 RRVYVGGLPPLANEQAIATFFSQVM--TAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAV 251 (435)
Q Consensus 175 ~~l~V~nlp~~~t~~~l~~~f~~~G--~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~l 251 (435)
.+|||+|||+.+|+++|+++|..|| .|..+. .+.+..++.++|||||+|.+.++|.+|+ .|||..|.|+.|
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~------i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i 75 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIK------FFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNP 75 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEE------EEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEE------EEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEE
Confidence 4799999999999999999999999 654311 1111125667899999999999999999 699999999999
Q ss_pred EEcCCCCCC
Q 013837 252 RVRRPTDYN 260 (435)
Q Consensus 252 ~v~~~~~~~ 260 (435)
.|.++.+..
T Consensus 76 ~V~~~~~~~ 84 (90)
T 3p5t_L 76 VVTPSNKLE 84 (90)
T ss_dssp EECCC----
T ss_pred EEEECCCCc
Confidence 999876543
No 235
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=2.3e-15 Score=116.25 Aligned_cols=77 Identities=29% Similarity=0.480 Sum_probs=68.9
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCc
Q 013837 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGV 249 (435)
Q Consensus 171 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~ 249 (435)
....++|||+|||..+|+++|+++|..||. |..+.+..++|||||+|.+.++|.+|+ .|++..|.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~------------i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~ 79 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGK------------AGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGK 79 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCC------------CSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCC------------eEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 346789999999999999999999999997 455666678999999999999999999 6999999999
Q ss_pred eEEEcCCCCC
Q 013837 250 AVRVRRPTDY 259 (435)
Q Consensus 250 ~l~v~~~~~~ 259 (435)
.|.|.++...
T Consensus 80 ~l~v~~a~~~ 89 (99)
T 2cpj_A 80 QLRVRFACHS 89 (99)
T ss_dssp CCEEEESSCC
T ss_pred eEEEEEcCCC
Confidence 9999988654
No 236
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.57 E-value=2.5e-14 Score=117.70 Aligned_cols=85 Identities=15% Similarity=0.239 Sum_probs=68.7
Q ss_pred hcccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecC
Q 013837 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEG 248 (435)
Q Consensus 170 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g 248 (435)
.....++|||+|||..+|+++|+++|..||.|..+. ++.+..++.++|||||+|.+.++|.+|+ .||+..|.|
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 111 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVK------IVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILN 111 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEE------EEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE------EEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 445678999999999999999999999999854310 0111112445899999999999999999 599999999
Q ss_pred ceEEEcCCCCCC
Q 013837 249 VAVRVRRPTDYN 260 (435)
Q Consensus 249 ~~l~v~~~~~~~ 260 (435)
+.|.|.++....
T Consensus 112 ~~l~v~~a~~~~ 123 (139)
T 1u6f_A 112 KRLKVALAASGH 123 (139)
T ss_dssp CEEEEEESSCCC
T ss_pred eEEEEEECCCCC
Confidence 999999887654
No 237
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=1.9e-15 Score=116.43 Aligned_cols=81 Identities=16% Similarity=0.119 Sum_probs=69.2
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCce
Q 013837 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 250 (435)
Q Consensus 172 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~ 250 (435)
...++|||+|||+.+|+++|+++|..||.|..+. .+.+...+.++|||||+|.+.++|.+|+ .||+..|.|+.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~------~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 86 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSV------CLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRK 86 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTC------EEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceE------EEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeE
Confidence 4568999999999999999999999999875421 2344445667899999999999999999 69999999999
Q ss_pred EEEcCCCC
Q 013837 251 VRVRRPTD 258 (435)
Q Consensus 251 l~v~~~~~ 258 (435)
|.|.++..
T Consensus 87 l~V~~a~~ 94 (98)
T 2cqp_A 87 VKLVLGSG 94 (98)
T ss_dssp CEEEESSC
T ss_pred EEEEEcCC
Confidence 99998754
No 238
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.57 E-value=1.8e-15 Score=122.07 Aligned_cols=85 Identities=21% Similarity=0.350 Sum_probs=69.8
Q ss_pred hhcccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHHhCCceecC
Q 013837 169 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEG 248 (435)
Q Consensus 169 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~l~~~~~~g 248 (435)
......++|||+|||..+|+++|+++|..||.|..+. .+.+...+.++|||||+|.+.++|.+|++|+|..|.|
T Consensus 31 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g 104 (124)
T 2jwn_A 31 KKEIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRIT------ILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRG 104 (124)
T ss_dssp HHHHHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEE------EEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETT
T ss_pred cccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE------EEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECC
Confidence 3445678999999999999999999999999864411 0111124567899999999999999999999999999
Q ss_pred ceEEEcCCCCC
Q 013837 249 VAVRVRRPTDY 259 (435)
Q Consensus 249 ~~l~v~~~~~~ 259 (435)
+.|.|.++...
T Consensus 105 ~~l~V~~a~~~ 115 (124)
T 2jwn_A 105 RTIKVLPKRTN 115 (124)
T ss_dssp EECEEEESSCC
T ss_pred eEEEEEECCCC
Confidence 99999987654
No 239
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=8.1e-15 Score=110.95 Aligned_cols=75 Identities=27% Similarity=0.448 Sum_probs=66.5
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCce
Q 013837 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 250 (435)
Q Consensus 172 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~ 250 (435)
...++|||+|||..+|+++|+++|..||. |..+.+. +|||||+|.+.++|.+|+ .|++..|.|+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~------------i~~v~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 71 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGK------------VLECDII--KNYGFVHIEDKTAAEDAIRNLHHYKLHGVN 71 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSC------------EEEEEEE--TTEEEEEESSHHHHHHHHHHHTTCBCSSCB
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCC------------EEEEEEE--CCEEEEEECCHHHHHHHHHHhcCCccCCcE
Confidence 45789999999999999999999999997 4444444 799999999999999999 69999999999
Q ss_pred EEEcCCCCCC
Q 013837 251 VRVRRPTDYN 260 (435)
Q Consensus 251 l~v~~~~~~~ 260 (435)
|.|.++....
T Consensus 72 l~v~~a~~~~ 81 (90)
T 2dnq_A 72 INVEASKNKS 81 (90)
T ss_dssp CEEECSSCCC
T ss_pred EEEEECCCCC
Confidence 9999987654
No 240
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.7e-15 Score=120.00 Aligned_cols=91 Identities=21% Similarity=0.216 Sum_probs=70.1
Q ss_pred hcccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCC--CCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCcee
Q 013837 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGP--GDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIF 246 (435)
Q Consensus 170 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~--~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~ 246 (435)
.....++|||+|||..+|+++|+++|..||.|..+..... ..++.+..++.++|||||+|.+.++|.+|+ .||+..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 4457899999999999999999999999998742100000 001111133556899999999999999999 5999999
Q ss_pred cCceEEEcCCCCCC
Q 013837 247 EGVAVRVRRPTDYN 260 (435)
Q Consensus 247 ~g~~l~v~~~~~~~ 260 (435)
.|+.|.|.++....
T Consensus 91 ~g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 91 QGSKLKVSLARKKP 104 (113)
T ss_dssp TTEECEEECSSCCC
T ss_pred CCCEEEEEECCCCC
Confidence 99999999987654
No 241
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=8.8e-15 Score=114.67 Aligned_cols=85 Identities=19% Similarity=0.223 Sum_probs=68.4
Q ss_pred hcccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEE-EEecCCCcEEEEEecCHHHHHHHH-Hh-CCcee
Q 013837 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVN-VYINHEKKFAFVEMRTVEEASNAM-AL-DGIIF 246 (435)
Q Consensus 170 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~-~~~~~~~g~afv~f~~~~~a~~a~-~l-~~~~~ 246 (435)
.....++|||+|||..+|+++|+++|..||.|..+.+ +.+ ...+.++|||||+|.+.++|.+|+ .| |+..|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i------~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~ 84 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRL------PKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHL 84 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEC------CCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBS
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEE------ecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeE
Confidence 3456789999999999999999999999998533211 011 113445899999999999999999 58 99999
Q ss_pred cCceEEEcCCCCCC
Q 013837 247 EGVAVRVRRPTDYN 260 (435)
Q Consensus 247 ~g~~l~v~~~~~~~ 260 (435)
.|+.|.|.++....
T Consensus 85 ~g~~l~v~~a~~~~ 98 (107)
T 2cph_A 85 YGRRLVLEWADSEV 98 (107)
T ss_dssp SSCBCEEEECCCCC
T ss_pred CCCEEEEEeCCCCC
Confidence 99999999987654
No 242
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.57 E-value=8e-15 Score=112.45 Aligned_cols=82 Identities=23% Similarity=0.379 Sum_probs=66.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCceEE
Q 013837 174 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVR 252 (435)
Q Consensus 174 ~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~l~ 252 (435)
.++|||+|||..+++++|+++|..||.|..+.+ +.+...+.++|||||+|.+.++|.+|+ .|+|..|.|+.|.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i------~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 75 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKM------MFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLK 75 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEC------CBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEE------EeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 579999999999999999999999997433111 111112456899999999999999999 6999999999999
Q ss_pred EcCCCCCCc
Q 013837 253 VRRPTDYNP 261 (435)
Q Consensus 253 v~~~~~~~~ 261 (435)
|.++.....
T Consensus 76 V~~a~~~~~ 84 (96)
T 2x1f_A 76 CGYSSNSDI 84 (96)
T ss_dssp EEECSCSSG
T ss_pred EEEcCCCCC
Confidence 999876543
No 243
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.57 E-value=6.5e-15 Score=117.03 Aligned_cols=82 Identities=21% Similarity=0.397 Sum_probs=67.9
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCce
Q 013837 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 250 (435)
Q Consensus 172 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~ 250 (435)
...++|||+|||..+|+++|+++|..||.|..+. +....++.++|||||+|.+.++|.+|+ .|||..|.|+.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~-------i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~ 77 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVL-------LIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKA 77 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEE-------EECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE-------EEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 4568999999999999999999999999864311 111114567899999999999999999 59999999999
Q ss_pred EEEcCCCCCC
Q 013837 251 VRVRRPTDYN 260 (435)
Q Consensus 251 l~v~~~~~~~ 260 (435)
|.|.++....
T Consensus 78 l~V~~a~~~~ 87 (116)
T 2fy1_A 78 IKVEQAKKPS 87 (116)
T ss_dssp CEEEECCCSS
T ss_pred EEEEECCCCC
Confidence 9999987544
No 244
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.57 E-value=4e-15 Score=126.54 Aligned_cols=78 Identities=28% Similarity=0.597 Sum_probs=73.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEccC
Q 013837 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATA 373 (435)
Q Consensus 294 ~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~~ 373 (435)
.++|||+|||..+|+++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+|+. ++..+.|+.|.|.++.+
T Consensus 3 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEcccccccc
Confidence 4689999999999999999999999999999999998899999999999999999999998 46899999999999854
No 245
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.56 E-value=6.8e-15 Score=115.56 Aligned_cols=86 Identities=10% Similarity=0.196 Sum_probs=64.4
Q ss_pred hhhcccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHHhCCceec
Q 013837 168 QQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFE 247 (435)
Q Consensus 168 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~l~~~~~~ 247 (435)
.+.....++|||+|||..+|+++|+++|..||.|..+.+ +.+..++.++|||||+|.+.++|.+|+...+..|.
T Consensus 19 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i------~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~ 92 (109)
T 2rs2_A 19 SHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLV------MRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELD 92 (109)
T ss_dssp -------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEE------CCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEET
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEE------EECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCC
Confidence 445567899999999999999999999999998533110 01111255689999999999999999976679999
Q ss_pred CceEEEcCCCCC
Q 013837 248 GVAVRVRRPTDY 259 (435)
Q Consensus 248 g~~l~v~~~~~~ 259 (435)
|+.|.|.++...
T Consensus 93 g~~l~V~~a~~~ 104 (109)
T 2rs2_A 93 SKTIDPKVAFPR 104 (109)
T ss_dssp TEEEEEEECCCC
T ss_pred CEEEEEEEccCC
Confidence 999999987654
No 246
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=1.1e-14 Score=114.31 Aligned_cols=76 Identities=25% Similarity=0.339 Sum_probs=67.1
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecC--
Q 013837 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEG-- 248 (435)
Q Consensus 172 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g-- 248 (435)
...++|||+|||+.+|+++|+++|..||. |..+.+..+ |||||+|.+.++|.+|| .||+..|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~------------i~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 79 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGD------------VCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHE 79 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSC------------EEEEEEETT-TEEEEEESSHHHHHHHHHHSSSEEEECTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------EeEEEEecC-CEEEEEECCHHHHHHHHHHHCcCCccCCc
Confidence 45789999999999999999999999997 555555555 99999999999999999 599999999
Q ss_pred ---ceEEEcCCCCCC
Q 013837 249 ---VAVRVRRPTDYN 260 (435)
Q Consensus 249 ---~~l~v~~~~~~~ 260 (435)
+.|.|.++....
T Consensus 80 ~~~~~i~V~~a~~~~ 94 (108)
T 1x4c_A 80 GETAYIRVKVDGPRS 94 (108)
T ss_dssp SCEEEEEEEESSCCS
T ss_pred CcceEEEEEeCCCCC
Confidence 999999887643
No 247
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=4.2e-15 Score=115.19 Aligned_cols=82 Identities=18% Similarity=0.235 Sum_probs=67.2
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHHhCCceecCce
Q 013837 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVA 250 (435)
Q Consensus 171 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~ 250 (435)
....++|||+|||+.+|+++|.++|+.||.|..+. ++.+ ..+.++|||||+|.+.++|..|+.+++..|.|+.
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~------i~~d-~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~ 80 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQ------MRRT-LHKAFKGSIFVVFDSIESAKKFVETPGQKYKETD 80 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEE------EECC-CTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTT
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEE------EEEC-CCCCCccEEEEEECCHHHHHHHHHcCCCEECCEE
Confidence 34568999999999999999999999999854311 0111 1156789999999999999999999999999999
Q ss_pred EEEcCCCCC
Q 013837 251 VRVRRPTDY 259 (435)
Q Consensus 251 l~v~~~~~~ 259 (435)
|.|.++.++
T Consensus 81 l~V~~~~~~ 89 (103)
T 1s79_A 81 LLILFKDDY 89 (103)
T ss_dssp CEEEEHHHH
T ss_pred EEEEEchHH
Confidence 999876544
No 248
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=6.8e-15 Score=112.40 Aligned_cols=75 Identities=23% Similarity=0.301 Sum_probs=65.4
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe------cCCCcEEEEEecCHHHHHHHH-HhCC
Q 013837 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI------NHEKKFAFVEMRTVEEASNAM-ALDG 243 (435)
Q Consensus 171 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~------~~~~g~afv~f~~~~~a~~a~-~l~~ 243 (435)
....++|||+|||..+++++|+++|..||.| ..+.+ +.++|||||+|.+.++|.+|+ .||+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v------------~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 80 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKV------------VKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINN 80 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCE------------EEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCe------------EEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCC
Confidence 3467899999999999999999999999974 33433 456899999999999999999 6999
Q ss_pred ceecCceEEEcCCC
Q 013837 244 IIFEGVAVRVRRPT 257 (435)
Q Consensus 244 ~~~~g~~l~v~~~~ 257 (435)
..|.|+.|.|.+++
T Consensus 81 ~~~~g~~l~v~~ak 94 (94)
T 2e5h_A 81 KQLFGRVIKASIAI 94 (94)
T ss_dssp EEETTEEEEEEECC
T ss_pred CeeCCcEEEEEecC
Confidence 99999999998763
No 249
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=2.7e-15 Score=117.89 Aligned_cols=84 Identities=20% Similarity=0.325 Sum_probs=69.2
Q ss_pred hhhcccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCcee
Q 013837 168 QQATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIF 246 (435)
Q Consensus 168 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~ 246 (435)
.......++|||+|||..+|+++|+++|..||.|..+. +....+.++|||||+|.+.++|.+|+ .|+|..|
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~--------i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~ 94 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVE--------IIFNERGSKGFGFVTFENSADADRAREKLHGTVV 94 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEE--------ECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEE
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEE--------EEECCCCCceEEEEEECCHHHHHHHHHHcCCCEE
Confidence 34556789999999999999999999999999864421 11112346899999999999999999 5999999
Q ss_pred cCceEEEcCCCCC
Q 013837 247 EGVAVRVRRPTDY 259 (435)
Q Consensus 247 ~g~~l~v~~~~~~ 259 (435)
+|+.|.|.++...
T Consensus 95 ~g~~l~V~~a~~~ 107 (109)
T 2err_A 95 EGRKIEVNNATAR 107 (109)
T ss_dssp TTEECEEEECCCS
T ss_pred CCEEEEEEECCCC
Confidence 9999999987643
No 250
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.56 E-value=8.9e-16 Score=116.06 Aligned_cols=82 Identities=23% Similarity=0.389 Sum_probs=67.5
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHHhCCceecCceE
Q 013837 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAV 251 (435)
Q Consensus 172 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~l 251 (435)
...++|||+|||..+|+++|+++|..||.|..+. .+.+..++.++|||||+|.+.++|.+|+.+++..|.|+.|
T Consensus 4 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l 77 (89)
T 3ucg_A 4 ADARSIYVGNVDYGATAEELEAHFHGCGSVNRVT------ILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQI 77 (89)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEE------EEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEEC
T ss_pred CcCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEE------EEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEE
Confidence 3568999999999999999999999999864311 0111124566899999999999999999999999999999
Q ss_pred EEcCCCCC
Q 013837 252 RVRRPTDY 259 (435)
Q Consensus 252 ~v~~~~~~ 259 (435)
.|.++...
T Consensus 78 ~V~~a~~~ 85 (89)
T 3ucg_A 78 KVIPKRTN 85 (89)
T ss_dssp EEEETTTT
T ss_pred EEEEccCC
Confidence 99987643
No 251
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=6.8e-15 Score=113.32 Aligned_cols=82 Identities=21% Similarity=0.280 Sum_probs=67.1
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEE---ecCCCcEEEEEecCHHHHHHHH-HhCCceecC
Q 013837 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVY---INHEKKFAFVEMRTVEEASNAM-ALDGIIFEG 248 (435)
Q Consensus 173 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~---~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g 248 (435)
+.++|||+|||+.+|+++|+++|..||.|..+. .+.+.. ++.++|||||+|.+.++|.+|+ .||+..|.|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 77 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCT------ISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDG 77 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEE------EEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE------EEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCC
Confidence 568999999999999999999999999864421 011111 2256799999999999999999 499999999
Q ss_pred ceEEEcCCCCCC
Q 013837 249 VAVRVRRPTDYN 260 (435)
Q Consensus 249 ~~l~v~~~~~~~ 260 (435)
+.|.|.++....
T Consensus 78 ~~l~V~~a~~~~ 89 (98)
T 2cpf_A 78 HKLEVRISERAT 89 (98)
T ss_dssp EECEEECSSCSS
T ss_pred eEEEEEEccCCC
Confidence 999999987654
No 252
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.56 E-value=1.8e-15 Score=115.81 Aligned_cols=79 Identities=18% Similarity=0.179 Sum_probs=67.0
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCceE
Q 013837 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAV 251 (435)
Q Consensus 173 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~l 251 (435)
..++|||+|||+.+|+++|+++|..||.|..+. .+.+...+.++|||||+|.+.++|.+|+ .||+..|.|+.|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~------~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l 87 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSV------CLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKV 87 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCC------EEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceE------EEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEE
Confidence 458999999999999999999999999875432 2333344567899999999999999999 599999999999
Q ss_pred EEcCCC
Q 013837 252 RVRRPT 257 (435)
Q Consensus 252 ~v~~~~ 257 (435)
.|.++.
T Consensus 88 ~v~~a~ 93 (95)
T 2ek1_A 88 KLSGPS 93 (95)
T ss_dssp EEECCC
T ss_pred EEEecc
Confidence 999764
No 253
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=1.5e-14 Score=109.44 Aligned_cols=76 Identities=22% Similarity=0.416 Sum_probs=66.8
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCc
Q 013837 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGV 249 (435)
Q Consensus 171 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~ 249 (435)
....++|||+|||..+|+++|+++|..||. |..+.+. ++||||+|.+.++|.+|+ .||+..|.|+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~------------v~~~~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~ 71 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGR------------VIECDVV--KDYAFVHMEKEADAKAAIAQLNGKEVKGK 71 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSC------------EEEEEEC--SSCEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCC------------EEEEEEE--CCEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 346789999999999999999999999997 5555554 569999999999999999 5999999999
Q ss_pred eEEEcCCCCCC
Q 013837 250 AVRVRRPTDYN 260 (435)
Q Consensus 250 ~l~v~~~~~~~ 260 (435)
.|.|.++....
T Consensus 72 ~l~v~~a~~~~ 82 (90)
T 2dnp_A 72 RINVELSTKGQ 82 (90)
T ss_dssp ECEEEESCCCC
T ss_pred EEEEEECCCCC
Confidence 99999987553
No 254
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.56 E-value=9.3e-16 Score=118.43 Aligned_cols=83 Identities=23% Similarity=0.358 Sum_probs=65.2
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEE----ecCCCcEEEEEecCHHHHHHHH-HhCCcee
Q 013837 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVY----INHEKKFAFVEMRTVEEASNAM-ALDGIIF 246 (435)
Q Consensus 172 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~----~~~~~g~afv~f~~~~~a~~a~-~l~~~~~ 246 (435)
...++|||+|||..+|+++|+++|..||.|...... +..++.+. ++.++|||||+|.+.++|.+|+ .|||..|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~--~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKT--GQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTT--TEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeecccc--ccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 456899999999999999999999999986430000 00002222 3456899999999999999999 5999999
Q ss_pred cCceEEEcCC
Q 013837 247 EGVAVRVRRP 256 (435)
Q Consensus 247 ~g~~l~v~~~ 256 (435)
.|+.|.|.++
T Consensus 89 ~g~~l~V~~A 98 (99)
T 2la6_A 89 SGNPIKVSFA 98 (99)
T ss_dssp SSSBCEEEEC
T ss_pred CCcEEEEEec
Confidence 9999999876
No 255
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.56 E-value=5.6e-15 Score=111.08 Aligned_cols=81 Identities=11% Similarity=0.314 Sum_probs=65.9
Q ss_pred hcccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHHhCCceecCc
Q 013837 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGV 249 (435)
Q Consensus 170 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~l~~~~~~g~ 249 (435)
.....++|||+|||+.+|+++|+++|..||.|..+. .+.+..++.++|||||+|.+.++|.+|+++++..|.|+
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~ 80 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCT------IKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGR 80 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEE------EEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEE------EeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCE
Confidence 445778999999999999999999999999854311 01111235568999999999999999999899999999
Q ss_pred eEEEcCC
Q 013837 250 AVRVRRP 256 (435)
Q Consensus 250 ~l~v~~~ 256 (435)
.|.|.++
T Consensus 81 ~i~v~~A 87 (87)
T 3s7r_A 81 VIDPKKA 87 (87)
T ss_dssp EEEEEEC
T ss_pred EEEEEeC
Confidence 9999864
No 256
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=1.6e-15 Score=117.15 Aligned_cols=83 Identities=18% Similarity=0.333 Sum_probs=67.4
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHHHHHhh-cCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHH-hCCceecC
Q 013837 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAI-GGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMA-LDGIIFEG 248 (435)
Q Consensus 171 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~-~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~-l~~~~~~g 248 (435)
....++|||+|||+.+|+++|+++|..||.|. .+. ++.+..++.++|||||+|.+.++|.+|++ ||+..|.|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~------i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 79 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVK------IIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPG 79 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEE------EEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESS
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEE------EeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCC
Confidence 34678999999999999999999999999864 311 11111234567999999999999999995 99999999
Q ss_pred ce----EEEcCCCCC
Q 013837 249 VA----VRVRRPTDY 259 (435)
Q Consensus 249 ~~----l~v~~~~~~ 259 (435)
+. |.|.++...
T Consensus 80 ~~~~~~l~v~~a~~~ 94 (99)
T 2div_A 80 ATPAKRFKLNYATYS 94 (99)
T ss_dssp CSSCEECCEEETTCC
T ss_pred CCcceeEEEeecCCC
Confidence 99 999987654
No 257
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=2.9e-15 Score=116.92 Aligned_cols=78 Identities=23% Similarity=0.312 Sum_probs=67.0
Q ss_pred cccCCeEEEcCCCCC-CCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhC--Ccee
Q 013837 171 TRHARRVYVGGLPPL-ANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALD--GIIF 246 (435)
Q Consensus 171 ~~~~~~l~V~nlp~~-~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~--~~~~ 246 (435)
..+.++|||+|||+. +|+++|+++|.+||. |..+.+..++|||||+|.+.++|..|+ .|+ +..|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~------------V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l 89 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGK------------IKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWF 89 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSC------------CSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCS
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCC------------EEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceE
Confidence 346789999999998 999999999999998 445555678999999999999999999 464 5679
Q ss_pred cCceEEEcCCCCCC
Q 013837 247 EGVAVRVRRPTDYN 260 (435)
Q Consensus 247 ~g~~l~v~~~~~~~ 260 (435)
.|++|.|.++....
T Consensus 90 ~Gr~l~V~~a~~~~ 103 (112)
T 1x4f_A 90 QGRCVKVDLSEKYK 103 (112)
T ss_dssp SSSCCEEEEECSCS
T ss_pred CCEEEEEEECcccc
Confidence 99999999986543
No 258
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=1.3e-14 Score=112.00 Aligned_cols=83 Identities=24% Similarity=0.310 Sum_probs=67.7
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCce
Q 013837 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 250 (435)
Q Consensus 172 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~ 250 (435)
...++|||+|||..+|+++|+++|..||.|..+.+ +.+...+.++|||||+|.+.++|.+|+ .||+..|.|+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i------~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 79 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHY------PIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRM 79 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEEC------CCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEE------EecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 46789999999999999999999999997433111 011113456799999999999999999 79999999999
Q ss_pred EEEcCCCCCC
Q 013837 251 VRVRRPTDYN 260 (435)
Q Consensus 251 l~v~~~~~~~ 260 (435)
|.|.++....
T Consensus 80 l~V~~a~~~~ 89 (99)
T 1whw_A 80 LHVLPSTIKK 89 (99)
T ss_dssp EEEEECCCCS
T ss_pred EEEEEcCCCc
Confidence 9999987654
No 259
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=9.5e-15 Score=111.80 Aligned_cols=82 Identities=21% Similarity=0.257 Sum_probs=67.0
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCceE
Q 013837 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAV 251 (435)
Q Consensus 173 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~l 251 (435)
.+++|||+|||..+|+++|+++|..||.|..+. .+.+..++.++|||||+|.+.++|.+|+ .||+..|.|++|
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~------i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 77 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIV------LMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPM 77 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEE------EECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEE------EeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEE
Confidence 568999999999999999999999999854311 0111113556899999999999999999 499999999999
Q ss_pred EEcCCCCCC
Q 013837 252 RVRRPTDYN 260 (435)
Q Consensus 252 ~v~~~~~~~ 260 (435)
.|.++....
T Consensus 78 ~V~~a~~~~ 86 (95)
T 2dnz_A 78 RVGHVTERL 86 (95)
T ss_dssp EEEESSCCC
T ss_pred EEEEccccc
Confidence 999987654
No 260
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.55 E-value=2.9e-15 Score=117.19 Aligned_cols=85 Identities=16% Similarity=0.229 Sum_probs=69.1
Q ss_pred hcccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCcee--
Q 013837 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIF-- 246 (435)
Q Consensus 170 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~-- 246 (435)
.....++|||+|||..+|+++|+++|..||.|..+.+ +.+..++.++|||||+|.+.++|.+|+ .||+..+
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i------~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~ 82 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTV------LKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLP 82 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEEC------CCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE------EecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccC
Confidence 3456789999999999999999999999998644211 111123567899999999999999999 5999987
Q ss_pred -cCceEEEcCCCCCC
Q 013837 247 -EGVAVRVRRPTDYN 260 (435)
Q Consensus 247 -~g~~l~v~~~~~~~ 260 (435)
.|++|.|.++....
T Consensus 83 ~~g~~l~v~~a~~~~ 97 (106)
T 2dgp_A 83 GMNRPIQVKPADSES 97 (106)
T ss_dssp TCSSCCEEEECCCCS
T ss_pred CCCceEEEEECCccc
Confidence 89999999887543
No 261
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.55 E-value=7.9e-15 Score=109.21 Aligned_cols=79 Identities=18% Similarity=0.415 Sum_probs=64.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCceEEE
Q 013837 175 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVRV 253 (435)
Q Consensus 175 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~l~v 253 (435)
.+|||+|||..+++++|+++|..||.|..+. .+.+..++.++|||||+|.+.++|..|+ .|||..|.|+.|.|
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~------i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 75 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGH------VMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRI 75 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEE------EEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEE------EEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 5899999999999999999999999854310 0111123455899999999999999999 59999999999999
Q ss_pred cCCCCC
Q 013837 254 RRPTDY 259 (435)
Q Consensus 254 ~~~~~~ 259 (435)
.++.+.
T Consensus 76 ~~a~~~ 81 (83)
T 3md1_A 76 NWAAKL 81 (83)
T ss_dssp EECCCC
T ss_pred EecCcC
Confidence 988654
No 262
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.55 E-value=1.3e-14 Score=115.91 Aligned_cols=81 Identities=17% Similarity=0.268 Sum_probs=65.9
Q ss_pred hcccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecC
Q 013837 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEG 248 (435)
Q Consensus 170 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g 248 (435)
.....++|||+|||..+|+++|+++|..||.|..+.+ +.+..++.++|||||+|.+.++|.+|+ .|||..|.|
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i------~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 109 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKV------FIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGT 109 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEE------CCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE------EeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 3456789999999999999999999999998533110 111123456899999999999999999 599999999
Q ss_pred ceEEEcCC
Q 013837 249 VAVRVRRP 256 (435)
Q Consensus 249 ~~l~v~~~ 256 (435)
+.|.|.++
T Consensus 110 ~~l~V~~a 117 (118)
T 2khc_A 110 KRLKVQLK 117 (118)
T ss_dssp EECCEEEC
T ss_pred EEEEEEec
Confidence 99999875
No 263
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.55 E-value=3.5e-14 Score=121.46 Aligned_cols=80 Identities=15% Similarity=0.164 Sum_probs=66.5
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCce
Q 013837 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 250 (435)
Q Consensus 172 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~ 250 (435)
...++|||+|||+.+++++|+++|..||.|..+.+ +.+ ..+.++|||||+|.+.++|.+|+ .||+..|.|++
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i------~~d-~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~ 158 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAV------DYD-RSGRSLGTADVHFERRADALKAMKQYKGVPLDGRP 158 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEE------CCC-TTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE------EEC-CCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEE
Confidence 35689999999999999999999999998643211 111 13567899999999999999999 59999999999
Q ss_pred EEEcCCCC
Q 013837 251 VRVRRPTD 258 (435)
Q Consensus 251 l~v~~~~~ 258 (435)
|.|.++..
T Consensus 159 l~V~~a~~ 166 (177)
T 2f3j_A 159 MDIQLVAS 166 (177)
T ss_dssp CEEEEESS
T ss_pred EEEEEecC
Confidence 99998764
No 264
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.55 E-value=3.4e-15 Score=113.55 Aligned_cols=80 Identities=18% Similarity=0.219 Sum_probs=67.3
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCce
Q 013837 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 250 (435)
Q Consensus 172 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~ 250 (435)
...++|||+|||..+|+++|+++|..||.|..+ .+....+.++|||||+|.+.++|.+|+ .|++..|.|+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~--------~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~ 77 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYA--------DIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGRE 77 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEE--------EEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEE--------EEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 467899999999999999999999999986431 111124456899999999999999999 59999999999
Q ss_pred EEEcCCCCC
Q 013837 251 VRVRRPTDY 259 (435)
Q Consensus 251 l~v~~~~~~ 259 (435)
|.|.++...
T Consensus 78 l~v~~a~~~ 86 (92)
T 2dgv_A 78 IDVRIDRNA 86 (92)
T ss_dssp CCCEECSCC
T ss_pred EEEEEcCCC
Confidence 999987654
No 265
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.4e-15 Score=122.57 Aligned_cols=81 Identities=19% Similarity=0.190 Sum_probs=69.7
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHHhCCceecCceE
Q 013837 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAV 251 (435)
Q Consensus 172 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~l 251 (435)
...++|||+|||+.+|+++|+++|..||.|..+. .+.+..++.++|||||+|.+.++|.+||.+|+..|.|+.|
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~------~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i 96 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSI------YIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFI 96 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTC------EEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceE------EEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEE
Confidence 4568999999999999999999999999875421 2334446677899999999999999999999999999999
Q ss_pred EEcCCCC
Q 013837 252 RVRRPTD 258 (435)
Q Consensus 252 ~v~~~~~ 258 (435)
.|.++..
T Consensus 97 ~V~~a~~ 103 (124)
T 1wel_A 97 QVHPITK 103 (124)
T ss_dssp EEEEECH
T ss_pred EEEECCH
Confidence 9998754
No 266
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2.2e-15 Score=120.00 Aligned_cols=85 Identities=19% Similarity=0.329 Sum_probs=68.8
Q ss_pred hcccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHHhCCceecCc
Q 013837 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGV 249 (435)
Q Consensus 170 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~l~~~~~~g~ 249 (435)
.....++|||+|||..+|+++|+++|..||.|..+. ++.+..++.++|||||+|.+.++|.+||..++..|.|+
T Consensus 23 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~------i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~ 96 (116)
T 1x4b_A 23 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCV------VMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGR 96 (116)
T ss_dssp HHHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEE------EECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE------EEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCE
Confidence 345668999999999999999999999999864311 01111235578999999999999999997799999999
Q ss_pred eEEEcCCCCCC
Q 013837 250 AVRVRRPTDYN 260 (435)
Q Consensus 250 ~l~v~~~~~~~ 260 (435)
.|.|.++....
T Consensus 97 ~l~V~~a~~~~ 107 (116)
T 1x4b_A 97 VVEPKRAVARE 107 (116)
T ss_dssp EEEEECCSSCC
T ss_pred EEEEEECCCCc
Confidence 99999987653
No 267
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.55 E-value=3.9e-16 Score=120.76 Aligned_cols=84 Identities=17% Similarity=0.227 Sum_probs=65.6
Q ss_pred hhcccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEE-EecCCCcEEEEEecCHHHHHHHHHhCCceec
Q 013837 169 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNV-YINHEKKFAFVEMRTVEEASNAMALDGIIFE 247 (435)
Q Consensus 169 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~-~~~~~~g~afv~f~~~~~a~~a~~l~~~~~~ 247 (435)
......++|||+|||..+|+++|+++|..|| |..+.+ +.+. ..+.++|||||+|.+.++|.+|+.|+|..|.
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i------~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~ 86 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRL------PREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLG 86 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEEC------SCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBT
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEE------EecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEEC
Confidence 3445679999999999999999999999998 654221 1111 2455789999999999999999999999999
Q ss_pred CceEEEcCCCCC
Q 013837 248 GVAVRVRRPTDY 259 (435)
Q Consensus 248 g~~l~v~~~~~~ 259 (435)
|+.|.|.++...
T Consensus 87 g~~l~V~~a~~~ 98 (100)
T 2j76_E 87 NRRIRVDVADQA 98 (100)
T ss_dssp TBCCCCEECCCS
T ss_pred CeEEEEEeccCC
Confidence 999999987653
No 268
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.55 E-value=1.7e-14 Score=114.66 Aligned_cols=86 Identities=23% Similarity=0.339 Sum_probs=68.9
Q ss_pred hcccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecC
Q 013837 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEG 248 (435)
Q Consensus 170 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g 248 (435)
.....++|||+|||..+|+++|+++|..||.|..+. ++.+...+.++|||||+|.+.++|.+|+ .|++..|.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 84 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDAR------VVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG 84 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEE------EEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETT
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE------EEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 345678999999999999999999999999854310 0011113445799999999999999999 599999999
Q ss_pred ceEEEcCCCCCCc
Q 013837 249 VAVRVRRPTDYNP 261 (435)
Q Consensus 249 ~~l~v~~~~~~~~ 261 (435)
+.|.|.++.....
T Consensus 85 ~~l~V~~a~~~~~ 97 (115)
T 2dgo_A 85 RQIRTNWATRKPP 97 (115)
T ss_dssp EECEEEESSCCCC
T ss_pred EEEEEEEccCCCC
Confidence 9999999876543
No 269
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.55 E-value=3.2e-14 Score=110.54 Aligned_cols=75 Identities=21% Similarity=0.317 Sum_probs=66.4
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCce
Q 013837 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 250 (435)
Q Consensus 172 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~ 250 (435)
...++|||+|||+.+|+++|+++|..||. |..+.+. ++||||+|.+.++|.+|+ .|++..|.|+.
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~------------i~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~ 74 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGK------------LERVKKL--KDYAFIHFDERDGAVKAMEEMNGKDLEGEN 74 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSC------------EEEEEEC--SSCEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------EEEEEEE--CCEEEEEeCCHHHHHHHHHHHCCCccCCCE
Confidence 45689999999999999999999999997 4555553 679999999999999999 59999999999
Q ss_pred EEEcCCCCCC
Q 013837 251 VRVRRPTDYN 260 (435)
Q Consensus 251 l~v~~~~~~~ 260 (435)
|.|.++....
T Consensus 75 l~v~~a~~~~ 84 (103)
T 2dgu_A 75 IEIVFAKPPD 84 (103)
T ss_dssp EEEEECCCCC
T ss_pred EEEEEcCCCc
Confidence 9999987654
No 270
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.55 E-value=8.7e-15 Score=112.02 Aligned_cols=76 Identities=32% Similarity=0.468 Sum_probs=65.8
Q ss_pred hcccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe-----cCCCcEEEEEecCHHHHHHHHH-hCC
Q 013837 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI-----NHEKKFAFVEMRTVEEASNAMA-LDG 243 (435)
Q Consensus 170 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~-----~~~~g~afv~f~~~~~a~~a~~-l~~ 243 (435)
.....++|||+|||+.+++++|+++|..||.|. .+.+ +.++|||||+|.+.++|.+|++ ||+
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~------------~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g 79 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLT------------KVTICKDREGKPKSFGFVCFKHPESVSYAIALLNG 79 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEE------------EEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTT
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEE------------EEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCC
Confidence 345678999999999999999999999999853 3332 3457999999999999999995 999
Q ss_pred ceecCceEEEcCCC
Q 013837 244 IIFEGVAVRVRRPT 257 (435)
Q Consensus 244 ~~~~g~~l~v~~~~ 257 (435)
..|.|+.|.|.++.
T Consensus 80 ~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 80 IRLYGRPINVSGPS 93 (95)
T ss_dssp CEETTEECEEECCC
T ss_pred CEECCCEEEEEEcC
Confidence 99999999999875
No 271
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.55 E-value=1.9e-15 Score=110.24 Aligned_cols=75 Identities=17% Similarity=0.276 Sum_probs=63.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHHhCCceecCceEEEcC
Q 013837 176 RVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVRVRR 255 (435)
Q Consensus 176 ~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~l~v~~ 255 (435)
+|||+|||..+|+++|+++|..||.|..+.+ +.+..++.++|||||+|.+.++|.+|+++++..+.|+.|.|.+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i------~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~ 74 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIEL------PMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKV 74 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECC------CCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE------EecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEE
Confidence 5999999999999999999999998755322 2223346779999999999999999998899999999999875
Q ss_pred C
Q 013837 256 P 256 (435)
Q Consensus 256 ~ 256 (435)
+
T Consensus 75 a 75 (75)
T 1iqt_A 75 A 75 (75)
T ss_dssp C
T ss_pred C
Confidence 3
No 272
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.55 E-value=8.5e-16 Score=118.76 Aligned_cols=80 Identities=18% Similarity=0.271 Sum_probs=66.8
Q ss_pred cCCeEEEcCCCC------CCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCce
Q 013837 173 HARRVYVGGLPP------LANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGII 245 (435)
Q Consensus 173 ~~~~l~V~nlp~------~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~ 245 (435)
..++|||+|||. .+++++|+++|.+||.|..+. ++.+..++.++|||||+|.+.++|.+|+ .|||..
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~------i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~ 78 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNME------FPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKR 78 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEE------CCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEE------EEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcc
Confidence 467999999999 999999999999999864421 1222233667899999999999999999 699999
Q ss_pred ecC-ceEEEcCCCC
Q 013837 246 FEG-VAVRVRRPTD 258 (435)
Q Consensus 246 ~~g-~~l~v~~~~~ 258 (435)
|.| +.|.|.++.+
T Consensus 79 ~~g~r~l~V~~a~~ 92 (100)
T 3ns6_A 79 LDLKHRLFLYTMKD 92 (100)
T ss_dssp SSSSCBCEEEESHH
T ss_pred cCCCeEEEEEECch
Confidence 999 9999998753
No 273
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.54 E-value=1.6e-15 Score=118.85 Aligned_cols=83 Identities=20% Similarity=0.307 Sum_probs=67.3
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCc
Q 013837 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGV 249 (435)
Q Consensus 171 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~ 249 (435)
....++|||+|||..+|+++|+++|..||.|..+. .+.+...+.++|||||+|.+.++|..|+ .|+|..|.|+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~------i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~ 96 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQ------LMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGR 96 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEE------EEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE------EEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 45678999999999999999999999999854310 0111112456799999999999999999 5999999999
Q ss_pred eEEEcCCCCC
Q 013837 250 AVRVRRPTDY 259 (435)
Q Consensus 250 ~l~v~~~~~~ 259 (435)
.|.|.++.+.
T Consensus 97 ~l~V~~a~~k 106 (108)
T 2jrs_A 97 PMKVGHVTER 106 (108)
T ss_dssp CCEEECSCSS
T ss_pred EEEEEEcccC
Confidence 9999987653
No 274
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=5.6e-15 Score=114.91 Aligned_cols=84 Identities=18% Similarity=0.173 Sum_probs=68.0
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHH-hCCceecCc
Q 013837 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMA-LDGIIFEGV 249 (435)
Q Consensus 171 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~-l~~~~~~g~ 249 (435)
....++|||+|||..+|+++|+++|..||.|..+.+ +.+..++.++|||||+|.+.++|.+|++ ||+..|.|+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i------~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 83 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYI------PREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGR 83 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEC------CBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTB
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE------EeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 346789999999999999999999999997533111 1111125568999999999999999995 999999999
Q ss_pred eEEEcCCCCCC
Q 013837 250 AVRVRRPTDYN 260 (435)
Q Consensus 250 ~l~v~~~~~~~ 260 (435)
.|.|.++....
T Consensus 84 ~l~V~~a~~~~ 94 (103)
T 2dnm_A 84 ELRVQVARYGR 94 (103)
T ss_dssp CCEEEECSSCC
T ss_pred EEEEEECCcCC
Confidence 99999987543
No 275
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=6.4e-15 Score=116.87 Aligned_cols=83 Identities=23% Similarity=0.308 Sum_probs=67.6
Q ss_pred hcccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHHhCCceecCc
Q 013837 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGV 249 (435)
Q Consensus 170 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~l~~~~~~g~ 249 (435)
.....++|||+|||..+|+++|+++|..||.|..+.+ +.+..++.++|||||+|.+.++|.+||.||+..|.|+
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i------~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~ 94 (114)
T 2cq4_A 21 EERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRI------ISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGV 94 (114)
T ss_dssp THHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEE------CCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEE------EecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCe
Confidence 3456789999999999999999999999997533110 1111225678999999999999999999999999999
Q ss_pred eEEEcCCCC
Q 013837 250 AVRVRRPTD 258 (435)
Q Consensus 250 ~l~v~~~~~ 258 (435)
.|.|.++..
T Consensus 95 ~l~V~~a~~ 103 (114)
T 2cq4_A 95 PIIVQASQA 103 (114)
T ss_dssp EEEEEEHHH
T ss_pred EEEEEecCC
Confidence 999997653
No 276
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.54 E-value=1.2e-14 Score=109.57 Aligned_cols=80 Identities=23% Similarity=0.292 Sum_probs=64.5
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecC-CCcEEEEEecCHHHHHHHHH-hCCceecCce
Q 013837 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINH-EKKFAFVEMRTVEEASNAMA-LDGIIFEGVA 250 (435)
Q Consensus 173 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~-~~g~afv~f~~~~~a~~a~~-l~~~~~~g~~ 250 (435)
..++|||+|||..+|+++|+++|..||.|..+.+ +.+..++. ++|||||+|.+.++|.+|+. |||..|.|+.
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i------~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 76 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDM------PVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQE 76 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEEC------CEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEE------EeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeE
Confidence 4679999999999999999999999998533110 11111122 78999999999999999995 9999999999
Q ss_pred EEEcCCCC
Q 013837 251 VRVRRPTD 258 (435)
Q Consensus 251 l~v~~~~~ 258 (435)
|.|.++.+
T Consensus 77 l~v~~a~~ 84 (88)
T 4a8x_A 77 ITATAVLA 84 (88)
T ss_dssp CEEEEECC
T ss_pred EEEEECCC
Confidence 99998754
No 277
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.54 E-value=1.4e-14 Score=129.85 Aligned_cols=78 Identities=18% Similarity=0.290 Sum_probs=73.4
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013837 292 EGPDRVFVGGLPY-YFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (435)
Q Consensus 292 ~~~~~l~V~nLp~-~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~ 370 (435)
.+.++|||+|||. .+|+++|+++|+.||.|..|.|+.++ +|||||+|.+.++|.+||+.|||..|.|+.|.|.+
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 4568999999999 99999999999999999999999874 78999999999999999999999999999999999
Q ss_pred ccCC
Q 013837 371 ATAS 374 (435)
Q Consensus 371 a~~~ 374 (435)
+...
T Consensus 107 a~~~ 110 (229)
T 2adc_A 107 SKHQ 110 (229)
T ss_dssp CSCC
T ss_pred ecCc
Confidence 9765
No 278
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=6.8e-15 Score=114.43 Aligned_cols=82 Identities=22% Similarity=0.257 Sum_probs=68.6
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCc
Q 013837 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGV 249 (435)
Q Consensus 171 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~ 249 (435)
....++|||+|||+.+|+++|+++|..||.|..+. +....+.++|||||+|.+.++|.+|+ .||+..|.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~--------i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 83 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAK--------VMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 83 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEE--------EEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE--------EEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 34678999999999999999999999999864321 11114467899999999999999999 5999999999
Q ss_pred eEEEcCCCCCC
Q 013837 250 AVRVRRPTDYN 260 (435)
Q Consensus 250 ~l~v~~~~~~~ 260 (435)
.|.|.++....
T Consensus 84 ~l~V~~a~~~~ 94 (103)
T 2d9p_A 84 PLYVALAQRKE 94 (103)
T ss_dssp BCEEEECSSCC
T ss_pred EEEEEEecccc
Confidence 99999987654
No 279
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.1e-15 Score=118.90 Aligned_cols=84 Identities=15% Similarity=0.228 Sum_probs=68.0
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCc
Q 013837 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGV 249 (435)
Q Consensus 171 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~ 249 (435)
....++|||+|||..+|+++|+++|..||.|..+. ++.+..++.++|||||+|.+.++|.+|+ .||+..|.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 85 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIY------LAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHL 85 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEE------EEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEE------EeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCc
Confidence 45678999999999999999999999999854311 0111123456799999999999999999 5999999999
Q ss_pred eEEEcCCCCCC
Q 013837 250 AVRVRRPTDYN 260 (435)
Q Consensus 250 ~l~v~~~~~~~ 260 (435)
.|.|.++....
T Consensus 86 ~l~v~~a~~~~ 96 (103)
T 2cq0_A 86 ILNVEWAKPST 96 (103)
T ss_dssp ECEEEESSCCC
T ss_pred EEEEEECCCCC
Confidence 99999987553
No 280
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.54 E-value=8.1e-15 Score=110.20 Aligned_cols=80 Identities=25% Similarity=0.346 Sum_probs=64.2
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCceE
Q 013837 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAV 251 (435)
Q Consensus 173 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~l 251 (435)
..++|||+|||..+|+++|+++|..||.|..+. .+.+..++.++|||||+|.+.++|..|+ .||+..|.|+.|
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 78 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDAR------VVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 78 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEE------EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEE------EEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 567999999999999999999999999854310 0011113446799999999999999999 599999999999
Q ss_pred EEcCCCC
Q 013837 252 RVRRPTD 258 (435)
Q Consensus 252 ~v~~~~~ 258 (435)
.|.++..
T Consensus 79 ~v~~a~~ 85 (87)
T 3bs9_A 79 RTNWATR 85 (87)
T ss_dssp EEEEEC-
T ss_pred EEEecCC
Confidence 9998754
No 281
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=6.9e-15 Score=115.04 Aligned_cols=83 Identities=22% Similarity=0.194 Sum_probs=66.6
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCc
Q 013837 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGV 249 (435)
Q Consensus 171 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~ 249 (435)
....++|||+|||..+|+++|+++|..||.|..+. .+.+..++.++|||||+|.+.++|.+|+ .|||..|.|+
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 93 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIH------LNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQ 93 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEE------EEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEE------EEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCc
Confidence 34568999999999999999999999999853310 0011112456899999999999999999 5999999999
Q ss_pred eEEEcCCCCC
Q 013837 250 AVRVRRPTDY 259 (435)
Q Consensus 250 ~l~v~~~~~~ 259 (435)
.|.|.++...
T Consensus 94 ~l~V~~a~~~ 103 (106)
T 1p27_B 94 PISVDWCFVR 103 (106)
T ss_dssp BCEEEESEES
T ss_pred EEEEEeecCC
Confidence 9999987543
No 282
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.1e-14 Score=113.08 Aligned_cols=84 Identities=25% Similarity=0.413 Sum_probs=68.0
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCc
Q 013837 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGV 249 (435)
Q Consensus 171 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~ 249 (435)
....++|||+|||+.+|+++|+++|..||.|..+.+ +.+...+.++|||||+|.+.++|.+|+ .||+..|.|+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i------~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 82 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVV------VKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGR 82 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEE------CCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEE------EeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 346789999999999999999999999998543110 111113456899999999999999999 6999999999
Q ss_pred eEEEcCCCCCC
Q 013837 250 AVRVRRPTDYN 260 (435)
Q Consensus 250 ~l~v~~~~~~~ 260 (435)
.|.|.++....
T Consensus 83 ~l~v~~a~~~~ 93 (102)
T 1x5s_A 83 QIRVDQAGKSS 93 (102)
T ss_dssp CCEEEEEECCC
T ss_pred EEEEEECCCCC
Confidence 99999876543
No 283
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=1.4e-14 Score=111.97 Aligned_cols=83 Identities=18% Similarity=0.287 Sum_probs=67.5
Q ss_pred hcccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecC
Q 013837 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEG 248 (435)
Q Consensus 170 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g 248 (435)
.....++|||+|||..+|+++|+++|..||.|..+. +.....+.++|||||+|.+.++|.+|+ .||+..|.|
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~-------i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 85 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLR-------LVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKE 85 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEE-------EEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEE-------EEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 345678999999999999999999999999854311 111112456799999999999999999 699999999
Q ss_pred ceEEEcCCCCC
Q 013837 249 VAVRVRRPTDY 259 (435)
Q Consensus 249 ~~l~v~~~~~~ 259 (435)
+.|.|.++.+.
T Consensus 86 ~~l~v~~a~~~ 96 (100)
T 2do4_A 86 NIIKVAISNSG 96 (100)
T ss_dssp CEEEEEECCCC
T ss_pred EEEEEEECCCC
Confidence 99999987654
No 284
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=2.1e-14 Score=113.27 Aligned_cols=84 Identities=20% Similarity=0.280 Sum_probs=68.3
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhC------C
Q 013837 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALD------G 243 (435)
Q Consensus 171 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~------~ 243 (435)
....++|||+|||+.+|+++|+++|..||.|..+.+ +.+..++.++|||||+|.+.++|.+|| .++ +
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i------~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~ 85 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRV------VLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGG 85 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEC------CBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEE------EecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCC
Confidence 346789999999999999999999999997533211 111123457899999999999999999 599 9
Q ss_pred ceecCceEEEcCCCCCC
Q 013837 244 IIFEGVAVRVRRPTDYN 260 (435)
Q Consensus 244 ~~~~g~~l~v~~~~~~~ 260 (435)
..|.|+.|.|.++....
T Consensus 86 ~~~~g~~l~v~~a~~~~ 102 (111)
T 1x4h_A 86 LKLDGRQLKVDLAVTRD 102 (111)
T ss_dssp EESSSCEEEEECCCCCC
T ss_pred cEEcCEEEEEEECCCCc
Confidence 99999999999987653
No 285
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.54 E-value=3.5e-15 Score=115.78 Aligned_cols=72 Identities=13% Similarity=0.259 Sum_probs=62.4
Q ss_pred EcCCCCCCCHHHHHHHH------------HhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEE
Q 013837 299 VGGLPYYFTETQIKELL------------ESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTL 366 (435)
Q Consensus 299 V~nLp~~~te~~l~~~F------------~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l 366 (435)
+.||+..+++++|++.| ++||.|..|.|+.+. ++.++|||||+|.+.++|.+|+..|||..|+|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45566666776666555 999999999999886 47899999999999999999999999999999999
Q ss_pred EEEEc
Q 013837 367 TVRRA 371 (435)
Q Consensus 367 ~V~~a 371 (435)
.|.|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99997
No 286
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=3.9e-15 Score=115.36 Aligned_cols=81 Identities=20% Similarity=0.274 Sum_probs=69.0
Q ss_pred hcccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHH-hCCceecC
Q 013837 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMA-LDGIIFEG 248 (435)
Q Consensus 170 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~-l~~~~~~g 248 (435)
.....++|||+|||..+|+++|+++|..||.|. .+.+ ..+.++|||||+|.+.++|.+|+. ||+..|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~---------~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 80 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFIK---------VPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEG 80 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEEE---------CCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEE---------EEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 345678999999999999999999999999751 1222 456789999999999999999995 99999999
Q ss_pred ceEEEcCCCCCC
Q 013837 249 VAVRVRRPTDYN 260 (435)
Q Consensus 249 ~~l~v~~~~~~~ 260 (435)
+.|.|.++....
T Consensus 81 ~~l~v~~a~~~~ 92 (101)
T 2fc9_A 81 RAIRLELQGPRG 92 (101)
T ss_dssp EEEEEEECSSCC
T ss_pred eEEEEEEcCCCC
Confidence 999999987543
No 287
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.54 E-value=2.5e-15 Score=125.73 Aligned_cols=81 Identities=20% Similarity=0.251 Sum_probs=65.0
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHHHH--HhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecC
Q 013837 172 RHARRVYVGGLPPLANEQAIATFFSQVM--TAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEG 248 (435)
Q Consensus 172 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G--~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g 248 (435)
...++|||+|||+.+|+++|+++|..|| .|..+. ++.+..++.++|||||+|.+.++|.+|| .|||..|.|
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~------i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~G 126 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELK------FAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNG 126 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEE------EEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEE------EEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 4568999999999999999999999999 643311 1111124567899999999999999999 589999999
Q ss_pred ceEEEcCCCC
Q 013837 249 VAVRVRRPTD 258 (435)
Q Consensus 249 ~~l~v~~~~~ 258 (435)
+.|.|.++..
T Consensus 127 r~l~V~~a~~ 136 (156)
T 3n9u_C 127 EKVDVRPATR 136 (156)
T ss_dssp EECEEEECCH
T ss_pred eEeEEEEcCC
Confidence 9999998764
No 288
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=1.7e-15 Score=118.32 Aligned_cols=85 Identities=16% Similarity=0.292 Sum_probs=68.5
Q ss_pred hcccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHHhCCceecCc
Q 013837 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGV 249 (435)
Q Consensus 170 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~l~~~~~~g~ 249 (435)
.....++|||+|||+.+|+++|+++|..||.|..+. ++.+..++.++|||||+|.+.++|.+||..++..|.|+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~------i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~ 85 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCV------IMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGR 85 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEE------EEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE------EeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCE
Confidence 345678999999999999999999999999864311 01111234567999999999999999996699999999
Q ss_pred eEEEcCCCCCC
Q 013837 250 AVRVRRPTDYN 260 (435)
Q Consensus 250 ~l~v~~~~~~~ 260 (435)
.|.|.++....
T Consensus 86 ~l~V~~a~~~~ 96 (105)
T 2dh8_A 86 NIDPKPCTPRG 96 (105)
T ss_dssp EEBCCCSCCSS
T ss_pred EEEEEEccCCC
Confidence 99999987554
No 289
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=1.9e-14 Score=109.37 Aligned_cols=76 Identities=26% Similarity=0.433 Sum_probs=66.2
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCc
Q 013837 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGV 249 (435)
Q Consensus 171 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~ 249 (435)
....++|||+|||..+|+++|+++|..||.| ..+.+. ++||||+|.+.++|.+|+ .||+..|.|+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v------------~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~ 72 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPV------------IECDIV--KDYAFVHMERAEDAVEAIRGLDNTEFQGK 72 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCC------------CEEEEC--SSEEEEEESCHHHHHHHHHHHTTEEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCe------------EEEEEE--CCEEEEEECCHHHHHHHHHHhCCCeeCCc
Confidence 4567899999999999999999999999974 344443 569999999999999999 6999999999
Q ss_pred eEEEcCCCCCC
Q 013837 250 AVRVRRPTDYN 260 (435)
Q Consensus 250 ~l~v~~~~~~~ 260 (435)
.|.|.++....
T Consensus 73 ~l~V~~a~~~~ 83 (92)
T 2dgt_A 73 RMHVQLSTSRL 83 (92)
T ss_dssp EEEEEESSCCC
T ss_pred EEEEEEccCCC
Confidence 99999987553
No 290
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.6e-14 Score=112.77 Aligned_cols=76 Identities=18% Similarity=0.279 Sum_probs=66.7
Q ss_pred ccCCeEEE--cCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCcee--
Q 013837 172 RHARRVYV--GGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIF-- 246 (435)
Q Consensus 172 ~~~~~l~V--~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~-- 246 (435)
.+.++||| +||++.+|+++|+++|.+||. |..+.+..++|||||+|.+.++|.+|+ .|||..|
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~------------v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~ 90 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGL------------VDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVD 90 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSC------------EEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEEEC
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCC------------eEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEcc
Confidence 35678999 779999999999999999997 566666678999999999999999999 6999988
Q ss_pred ---cCceEEEcCCCCC
Q 013837 247 ---EGVAVRVRRPTDY 259 (435)
Q Consensus 247 ---~g~~l~v~~~~~~ 259 (435)
.|++|.|.++...
T Consensus 91 ~lg~g~~l~v~~a~~~ 106 (114)
T 2cq2_A 91 DLGQKITLYLNFVEKV 106 (114)
T ss_dssp TTSCEEECEEEEESCC
T ss_pred ccCCCcEEEEEecccC
Confidence 6889999987644
No 291
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.9e-15 Score=119.87 Aligned_cols=83 Identities=12% Similarity=0.099 Sum_probs=68.6
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHHHHHh-hcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHHhCCceecCc
Q 013837 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTA-IGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGV 249 (435)
Q Consensus 171 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i-~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~l~~~~~~g~ 249 (435)
....++|||+|||+.+|+++|+++|..||.| ..+. ++.+. ++.++|||||+|.+.++|.+||++++..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~------i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr 84 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVH------VLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGR 84 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEE------ECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEE------EEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCe
Confidence 3467899999999999999999999999875 3311 11122 56789999999999999999997799999999
Q ss_pred eEEEcCCCCCC
Q 013837 250 AVRVRRPTDYN 260 (435)
Q Consensus 250 ~l~v~~~~~~~ 260 (435)
.|.|.++....
T Consensus 85 ~i~v~~a~~~~ 95 (114)
T 2cpy_A 85 EAFVHVVTLED 95 (114)
T ss_dssp EEEEEEECHHH
T ss_pred EEEEEECCHHH
Confidence 99999876543
No 292
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.3e-15 Score=117.37 Aligned_cols=82 Identities=17% Similarity=0.239 Sum_probs=67.7
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe-cCCCcEEEEEecCHHHHHHHHHhCCceecCce
Q 013837 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI-NHEKKFAFVEMRTVEEASNAMALDGIIFEGVA 250 (435)
Q Consensus 172 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~-~~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~ 250 (435)
...++|||+|||+.+|+++|+++|..|| |..+.+ +.+..+ +.++|||||+|.+.++|.+||.|++..|.|+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i------~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~ 85 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRL------PREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKR 85 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEEC------CBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEE------ecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcE
Confidence 3568999999999999999999999998 644211 111122 56789999999999999999999999999999
Q ss_pred EEEcCCCCCC
Q 013837 251 VRVRRPTDYN 260 (435)
Q Consensus 251 l~v~~~~~~~ 260 (435)
|.|.++....
T Consensus 86 l~V~~a~~~~ 95 (104)
T 1wi8_A 86 IRVDVADQAQ 95 (104)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEccCCC
Confidence 9999887643
No 293
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.54 E-value=1.2e-14 Score=113.46 Aligned_cols=83 Identities=22% Similarity=0.217 Sum_probs=67.5
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecC-
Q 013837 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEG- 248 (435)
Q Consensus 171 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g- 248 (435)
....++|||+|||..+|+++|+++|..||.|..+. +.....+.++|||||+|.+.++|.+|+ .||+..|.|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~-------i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg 84 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECT-------VLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPG 84 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEE-------EEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE-------EEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCC
Confidence 34678999999999999999999999999864321 111113445899999999999999999 599999998
Q ss_pred --ceEEEcCCCCCC
Q 013837 249 --VAVRVRRPTDYN 260 (435)
Q Consensus 249 --~~l~v~~~~~~~ 260 (435)
++|.|.++....
T Consensus 85 ~~~~l~V~~a~~~~ 98 (105)
T 2dnh_A 85 ASSSLVVKFADTDK 98 (105)
T ss_dssp CSSCCEEEESCSSC
T ss_pred CCccEEEEECccCc
Confidence 999999887543
No 294
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.54 E-value=3.6e-15 Score=118.86 Aligned_cols=81 Identities=17% Similarity=0.194 Sum_probs=67.3
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHHHHH---hhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHHhCCceec
Q 013837 171 TRHARRVYVGGLPPLANEQAIATFFSQVMT---AIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFE 247 (435)
Q Consensus 171 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~---i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~l~~~~~~ 247 (435)
....++|||+|||+.+|+++|+++|..||. |..+. +.....+.++|||||+|.+.++|.+||++++..|.
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~-------i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~ 86 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVH-------FIYTREGRQSGEAFVELESEDDVKLALKKDRESMG 86 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEE-------EEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEET
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEE-------EEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeEC
Confidence 456789999999999999999999999998 44311 11112356789999999999999999999999999
Q ss_pred CceEEEcCCCC
Q 013837 248 GVAVRVRRPTD 258 (435)
Q Consensus 248 g~~l~v~~~~~ 258 (435)
|+.|.|.++..
T Consensus 87 gr~i~V~~a~~ 97 (118)
T 2db1_A 87 HRYIEVFKSHR 97 (118)
T ss_dssp TEEEEEEEECH
T ss_pred CeEEEEEECCH
Confidence 99999987753
No 295
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.53 E-value=1.1e-14 Score=117.77 Aligned_cols=83 Identities=22% Similarity=0.259 Sum_probs=67.6
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCc
Q 013837 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGV 249 (435)
Q Consensus 171 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~ 249 (435)
....++|||+|||+.+|+++|+++|..||.|..+. ++.+..++..+|||||+|.+.++|.+|+ .||+..|.|+
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~------i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~ 116 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVS------IVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGR 116 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEE------EECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE------EEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 35678999999999999999999999999853311 0011123467899999999999999999 5999999999
Q ss_pred eEEEcCCCCC
Q 013837 250 AVRVRRPTDY 259 (435)
Q Consensus 250 ~l~v~~~~~~ 259 (435)
+|.|.++...
T Consensus 117 ~l~V~~a~~~ 126 (129)
T 2kxn_B 117 RIRVDFSITK 126 (129)
T ss_dssp CCEESCCSSS
T ss_pred EEEEEEecCC
Confidence 9999998654
No 296
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.53 E-value=5.6e-15 Score=113.32 Aligned_cols=79 Identities=18% Similarity=0.252 Sum_probs=69.0
Q ss_pred hcccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHH-hCCceecC
Q 013837 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMA-LDGIIFEG 248 (435)
Q Consensus 170 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~-l~~~~~~g 248 (435)
.....++|||+|||..+|+++|+++|..||.|.. + ...+.++|||||+|.+.++|.+|+. |+|..|.|
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~---------~--~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 80 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRL---------V--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDG 80 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECC---------E--EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETT
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEE---------e--CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 3456789999999999999999999999998621 3 5566788999999999999999995 99999999
Q ss_pred ceEEEcCCCCC
Q 013837 249 VAVRVRRPTDY 259 (435)
Q Consensus 249 ~~l~v~~~~~~ 259 (435)
+.|.|.++.+.
T Consensus 81 ~~l~v~~a~~~ 91 (96)
T 1fjc_A 81 RSVSLYYTGEK 91 (96)
T ss_dssp EEEEEEECSSS
T ss_pred eEEEEEEcCCC
Confidence 99999987654
No 297
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.53 E-value=3.7e-15 Score=121.28 Aligned_cols=86 Identities=15% Similarity=0.278 Sum_probs=70.4
Q ss_pred hcccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCc----
Q 013837 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGI---- 244 (435)
Q Consensus 170 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~---- 244 (435)
.....++|||+|||+.+|+++|+++|..||.|.... ..++.+..++.++|||||+|.+. +|.+|+ .||+.
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~----v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~ 93 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSN----VRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPL 93 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTT----EECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceee----EEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCc
Confidence 345678999999999999999999999999874310 01233344677899999999999 999999 69999
Q ss_pred eecCceEEEcCCCCCC
Q 013837 245 IFEGVAVRVRRPTDYN 260 (435)
Q Consensus 245 ~~~g~~l~v~~~~~~~ 260 (435)
.|.|+.|.|.++....
T Consensus 94 ~~~gr~l~V~~a~~~~ 109 (131)
T 2m2b_A 94 TIDGKTINVEFAKGSK 109 (131)
T ss_dssp CGGGCCCCCEECCCSC
T ss_pred cCCCEEEEEEECCCCC
Confidence 9999999999887653
No 298
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.53 E-value=2.1e-15 Score=117.30 Aligned_cols=82 Identities=22% Similarity=0.321 Sum_probs=66.8
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHHhCCceecCceE
Q 013837 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAV 251 (435)
Q Consensus 172 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~l 251 (435)
...++|||+|||+.+|+++|+++|..|| |..+. ++.+..++.++|||||+|.+.++|.+||.||+..|.|+.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~------i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l 85 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVR------LVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSL 85 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEE------EEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEE------EeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEE
Confidence 4578999999999999999999999996 53311 0111123456899999999999999999999999999999
Q ss_pred EEcCCCCCC
Q 013837 252 RVRRPTDYN 260 (435)
Q Consensus 252 ~v~~~~~~~ 260 (435)
.|.++....
T Consensus 86 ~V~~a~~~~ 94 (103)
T 2dng_A 86 RVDIAEGRK 94 (103)
T ss_dssp EEEECCCCC
T ss_pred EEEEecCCC
Confidence 999887543
No 299
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=5.9e-15 Score=112.49 Aligned_cols=77 Identities=21% Similarity=0.389 Sum_probs=65.6
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCC-ceecCc
Q 013837 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDG-IIFEGV 249 (435)
Q Consensus 172 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~-~~~~g~ 249 (435)
...++|||+|||..+|+++|+++|..||.|+.. +.. .++|||||+|.+.++|.+|+ .||+ ..|.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~--------~~~----~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~ 73 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAG--------QVL----LKSGYAFVDYPDQNWAIRAIETLSGKVELHGK 73 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSS--------CEE----EETTEEEECCSCHHHHHHHHHHHTTTCEETTE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEE--------EEE----cCCCEEEEEECCHHHHHHHHHHccCCeeECCE
Confidence 356899999999999999999999999984321 111 25899999999999999999 5999 999999
Q ss_pred eEEEcCCCCCC
Q 013837 250 AVRVRRPTDYN 260 (435)
Q Consensus 250 ~l~v~~~~~~~ 260 (435)
.|.|.++....
T Consensus 74 ~l~v~~a~~~~ 84 (93)
T 2cqh_A 74 IMEVDYSVSKK 84 (93)
T ss_dssp ECEEEECCCCC
T ss_pred EEEEEEccCcc
Confidence 99999987543
No 300
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.52 E-value=1.6e-14 Score=119.49 Aligned_cols=88 Identities=16% Similarity=0.183 Sum_probs=71.2
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCce
Q 013837 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 250 (435)
Q Consensus 172 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~ 250 (435)
...++|||+|||+.+|+++|+++|..||.|..+.+. ..-.+....++.++|||||+|.+.++|.+|+ .|||..|.|+.
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~-~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQR-IMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHH-HHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccccccc-ceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 456899999999999999999999999987431000 0001333467889999999999999999999 59999999999
Q ss_pred EEEcCCCCCC
Q 013837 251 VRVRRPTDYN 260 (435)
Q Consensus 251 l~v~~~~~~~ 260 (435)
|.|.++....
T Consensus 122 l~V~~a~~~~ 131 (143)
T 3egn_A 122 MVVQFARSAR 131 (143)
T ss_dssp CEEEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999986543
No 301
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=4.9e-14 Score=108.24 Aligned_cols=76 Identities=22% Similarity=0.349 Sum_probs=68.0
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCc
Q 013837 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGV 249 (435)
Q Consensus 171 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~ 249 (435)
....++|||+|| .+|+++|+++|..||. |..+.+..++|||||+|.+.++|.+|+ .|++..|.|+
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~------------i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 77 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGN------------IIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESV 77 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSC------------EEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCC------------EEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 346789999996 8999999999999997 666777889999999999999999999 6999999999
Q ss_pred eEEEcCCCCCC
Q 013837 250 AVRVRRPTDYN 260 (435)
Q Consensus 250 ~l~v~~~~~~~ 260 (435)
.|.|.++....
T Consensus 78 ~l~v~~a~~~~ 88 (97)
T 1x5p_A 78 QLKVNIARKQP 88 (97)
T ss_dssp EEEEECCSSCC
T ss_pred EEEEEECCCCC
Confidence 99999986543
No 302
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.9e-15 Score=117.85 Aligned_cols=85 Identities=31% Similarity=0.434 Sum_probs=68.9
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCc
Q 013837 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGV 249 (435)
Q Consensus 171 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~ 249 (435)
....++|||+|||..+++++|+++|..||.|..+. .+.+...+.++|||||+|.+.++|.+|+ .|||..|.|+
T Consensus 5 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~------i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 78 (104)
T 1p1t_A 5 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFR------LVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGR 78 (104)
T ss_dssp HHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEE------EEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSS
T ss_pred CCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEE------EEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCc
Confidence 34568999999999999999999999999864311 0111113456899999999999999999 5999999999
Q ss_pred eEEEcCCCCCCc
Q 013837 250 AVRVRRPTDYNP 261 (435)
Q Consensus 250 ~l~v~~~~~~~~ 261 (435)
.|.|.++.....
T Consensus 79 ~l~v~~a~~~~~ 90 (104)
T 1p1t_A 79 ALRVDNAASEKN 90 (104)
T ss_dssp CBEEEETTCTTH
T ss_pred EEEEEeCCCccc
Confidence 999999876554
No 303
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=5.5e-15 Score=112.17 Aligned_cols=80 Identities=19% Similarity=0.268 Sum_probs=66.3
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHHhCCceecCceE
Q 013837 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAV 251 (435)
Q Consensus 172 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~l 251 (435)
...++|||+|||+.+|+++|+++|..| .|..+. .+.+ ..+.++|||||+|.+.++|.+|+.+|+..|.|+.|
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~------i~~~-~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i 79 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIR------IVRN-AHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYI 79 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEE------EEEC-TTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEE------EEEC-CCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEE
Confidence 457899999999999999999999999 654311 1111 23556899999999999999999999999999999
Q ss_pred EEcCCCCC
Q 013837 252 RVRRPTDY 259 (435)
Q Consensus 252 ~v~~~~~~ 259 (435)
.|.++...
T Consensus 80 ~v~~a~~~ 87 (91)
T 2dgw_A 80 EVFREKSG 87 (91)
T ss_dssp EEEEESSC
T ss_pred EEEECCcC
Confidence 99987654
No 304
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.52 E-value=7.3e-15 Score=125.98 Aligned_cols=83 Identities=18% Similarity=0.308 Sum_probs=72.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEE
Q 013837 291 AEGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRR 370 (435)
Q Consensus 291 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~ 370 (435)
....++|||+|||..+|+++|+++|..||.|.. .++.+..+|.++|||||+|.+.++|.+||+ |||..|.|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 87 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEec
Confidence 455689999999999999999999999998766 234444578899999999999999999995 999999999999999
Q ss_pred ccCCC
Q 013837 371 ATASS 375 (435)
Q Consensus 371 a~~~~ 375 (435)
+..+.
T Consensus 88 ~~~~~ 92 (175)
T 1fje_B 88 PKGRD 92 (175)
T ss_dssp CCCSS
T ss_pred CCCcc
Confidence 97654
No 305
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=4.1e-15 Score=115.84 Aligned_cols=80 Identities=19% Similarity=0.199 Sum_probs=66.3
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhc-CCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHHhCCceecCce
Q 013837 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIG-GNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVA 250 (435)
Q Consensus 172 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~-~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~ 250 (435)
...++|||+|||+.+|+++|+++|..||.|.. +. ++.+ .++.++|||||+|.+.++|.+||..++..|+|+.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~------i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~ 85 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMT------LPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY 85 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEE------CCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEE------EEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcE
Confidence 45689999999999999999999999997532 10 0111 3567789999999999999999977999999999
Q ss_pred EEEcCCCC
Q 013837 251 VRVRRPTD 258 (435)
Q Consensus 251 l~v~~~~~ 258 (435)
|.|.++..
T Consensus 86 i~v~~~~~ 93 (104)
T 1wg5_A 86 IEIFKSSR 93 (104)
T ss_dssp CEEEEECT
T ss_pred EEEEECCH
Confidence 99987654
No 306
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.51 E-value=2.1e-14 Score=111.96 Aligned_cols=82 Identities=20% Similarity=0.244 Sum_probs=67.9
Q ss_pred cccCCeEEEcCCCCCC------CHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCC
Q 013837 171 TRHARRVYVGGLPPLA------NEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDG 243 (435)
Q Consensus 171 ~~~~~~l~V~nlp~~~------t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~ 243 (435)
....++|||+|||+.+ |+++|+++|..||.|..+.+ . ..++.++|||||+|.+.++|.+|+ .|||
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i-------~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g 83 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFY-------P-EEDGKTKGYIFLEYASPAHAVDAVKNADG 83 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEEC-------C-CBTTBSCCEEEEEECSSSHHHHHHHHCSS
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEe-------e-CCCCCeeeEEEEEECCHHHHHHHHHHhCC
Confidence 3456899999999999 88999999999998644211 0 124467899999999999999999 5999
Q ss_pred ceecCc-eEEEcCCCCCC
Q 013837 244 IIFEGV-AVRVRRPTDYN 260 (435)
Q Consensus 244 ~~~~g~-~l~v~~~~~~~ 260 (435)
..|.|+ +|.|.++.+..
T Consensus 84 ~~~~g~~~l~V~~a~~~~ 101 (105)
T 2nlw_A 84 YKLDKQHTFRVNLFTDFD 101 (105)
T ss_dssp EECSTTCEEEEECSCCCC
T ss_pred cccCCCceEEEEEcchHh
Confidence 999998 99999987543
No 307
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.51 E-value=2.8e-14 Score=112.36 Aligned_cols=74 Identities=20% Similarity=0.369 Sum_probs=65.3
Q ss_pred ccCCeEEEcCCCCC-CCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCc
Q 013837 172 RHARRVYVGGLPPL-ANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGV 249 (435)
Q Consensus 172 ~~~~~l~V~nlp~~-~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~ 249 (435)
...++|||+|||+. +|+++|+++|..||.|. .+.+ ++|||||+|.+.++|.+|+ .|++..|.|+
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~------------~v~i--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 90 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVA------------GCSV--HKGYAFVQYSNERHARAAVLGENGRVLAGQ 90 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCS------------EEEE--ETTEEEEECSSSHHHHHHHHHHTTCEETTE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeE------------EEEE--eCCEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 34689999999999 99999999999999753 3333 6899999999999999999 7999999999
Q ss_pred eEEEcCCCCC
Q 013837 250 AVRVRRPTDY 259 (435)
Q Consensus 250 ~l~v~~~~~~ 259 (435)
.|.|.++...
T Consensus 91 ~l~V~~a~~~ 100 (110)
T 1wf1_A 91 TLDINMAGEP 100 (110)
T ss_dssp ECCEEESCCC
T ss_pred EEEEEECCCC
Confidence 9999988643
No 308
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=2.8e-14 Score=105.43 Aligned_cols=71 Identities=13% Similarity=0.150 Sum_probs=61.1
Q ss_pred CCe-EEEcCCCCCCCHHH----HHHHHHHHH-HhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCcee
Q 013837 174 ARR-VYVGGLPPLANEQA----IATFFSQVM-TAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIF 246 (435)
Q Consensus 174 ~~~-l~V~nlp~~~t~~~----l~~~f~~~G-~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~ 246 (435)
+.| |||+|||+.+++++ |+++|.+|| +|+ ++ + .|+|||+|.+.++|..|+ .|+|..|
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl------------~V-t---gG~AfV~F~~~esA~~A~~~l~G~~l 71 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVL------------SI-T---GCSAILRFINQDSAERAQKRMENEDV 71 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEE------------EC-C---TTCEEEEESSHHHHHHHHHHHTTCCS
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeE------------EE-e---cCEEEEEECCHHHHHHHHHHhcCCcc
Confidence 445 99999999999988 558999995 854 33 2 299999999999999999 6999999
Q ss_pred cCceEEEcCCCCCC
Q 013837 247 EGVAVRVRRPTDYN 260 (435)
Q Consensus 247 ~g~~l~v~~~~~~~ 260 (435)
.|++|.|.+++...
T Consensus 72 ~gr~i~v~~A~~~s 85 (96)
T 2diu_A 72 FGNRIIVSFTPKNR 85 (96)
T ss_dssp SSSCCEEESSCCSC
T ss_pred CCceEEEEecCCCc
Confidence 99999999987654
No 309
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.51 E-value=2.1e-14 Score=112.53 Aligned_cols=79 Identities=16% Similarity=0.189 Sum_probs=65.2
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCce
Q 013837 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 250 (435)
Q Consensus 172 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~ 250 (435)
...++|||+|||+.+|+++|+++|..||.|..+. ++.+ ..+.++|||||+|.+.++|.+|+ .|++..|.|+.
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~------i~~~-~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 99 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAA------VHYD-RSGRSLGTADVHFERKADALKAMKQYNGVPLDGRP 99 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEE------EEEC-TTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE------EEEC-CCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 4578999999999999999999999999854311 0111 13456899999999999999999 59999999999
Q ss_pred EEEcCCC
Q 013837 251 VRVRRPT 257 (435)
Q Consensus 251 l~v~~~~ 257 (435)
|.|.++.
T Consensus 100 l~V~~a~ 106 (107)
T 3ulh_A 100 MNIQLVT 106 (107)
T ss_dssp CEEEEEC
T ss_pred EEEEEeC
Confidence 9998764
No 310
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.51 E-value=2.5e-14 Score=112.68 Aligned_cols=83 Identities=20% Similarity=0.167 Sum_probs=66.7
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCc
Q 013837 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGV 249 (435)
Q Consensus 171 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~ 249 (435)
....++|||+|||..+|+++|+++|..||.|..+.+ +.+..++.++|||||+|.+.++|..|+ .|+|..|.|+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i------~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 96 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHL------NLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQ 96 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEC------CBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE------EecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 346789999999999999999999999997433110 011112445799999999999999999 5999999999
Q ss_pred eEEEcCCCCC
Q 013837 250 AVRVRRPTDY 259 (435)
Q Consensus 250 ~l~v~~~~~~ 259 (435)
.|.|.++...
T Consensus 97 ~l~V~~a~~~ 106 (110)
T 1oo0_B 97 TIQVDWCFVK 106 (110)
T ss_dssp ECEEEESEES
T ss_pred EEEEEEcccC
Confidence 9999987543
No 311
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.51 E-value=2.3e-14 Score=110.07 Aligned_cols=77 Identities=19% Similarity=0.360 Sum_probs=67.3
Q ss_pred ccCCeEEEcCCCCCCCHHHHH----HHHHHHHHhhcCCCCCCCCceEEEE---ecCCCcEEEEEecCHHHHHHHH-HhCC
Q 013837 172 RHARRVYVGGLPPLANEQAIA----TFFSQVMTAIGGNSAGPGDAVVNVY---INHEKKFAFVEMRTVEEASNAM-ALDG 243 (435)
Q Consensus 172 ~~~~~l~V~nlp~~~t~~~l~----~~f~~~G~i~~~~~~~~~~~v~~~~---~~~~~g~afv~f~~~~~a~~a~-~l~~ 243 (435)
.+.++|||+|||..+++++|+ ++|..||.| ..+. .+.++|||||+|.+.++|..|+ .|+|
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i------------~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g 73 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQI------------LDILVSRSLKMRGQAFVIFKEVSSATNALRSMQG 73 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCE------------EEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCE------------EEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCC
Confidence 467899999999999999999 999999974 3443 3467899999999999999999 5999
Q ss_pred ceecCceEEEcCCCCCC
Q 013837 244 IIFEGVAVRVRRPTDYN 260 (435)
Q Consensus 244 ~~~~g~~l~v~~~~~~~ 260 (435)
..|.|+.|.|.++....
T Consensus 74 ~~~~g~~l~v~~a~~~~ 90 (97)
T 1nu4_A 74 FPFYDKPMRIQYAKTDS 90 (97)
T ss_dssp CEETTEECEEEECSSCC
T ss_pred CEECCcEEEEEEccCCC
Confidence 99999999999987654
No 312
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.51 E-value=4.7e-15 Score=120.58 Aligned_cols=81 Identities=19% Similarity=0.192 Sum_probs=67.4
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHHHHH---hhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHHhCCceec
Q 013837 171 TRHARRVYVGGLPPLANEQAIATFFSQVMT---AIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFE 247 (435)
Q Consensus 171 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~---i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~l~~~~~~ 247 (435)
....++|||+|||+.+|+++|+++|..||. |..+. ++.+ ..+.++|||||+|.+.++|.+||++|+..|.
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~------i~~d-~~g~srG~aFV~F~~~e~a~~Al~~~g~~l~ 113 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVH------FIYT-REGRQSGEAFVELGSEDDVKMALKKDRESMG 113 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEE------EEEC-SSSCEEEEEEEECSSHHHHHHHHTTTEEESS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEE------EEEC-CCCCCCeEEEEEECCHHHHHHHHhcCCCEEC
Confidence 456789999999999999999999999998 43311 1122 2367789999999999999999999999999
Q ss_pred CceEEEcCCCC
Q 013837 248 GVAVRVRRPTD 258 (435)
Q Consensus 248 g~~l~v~~~~~ 258 (435)
|+.|.|.++..
T Consensus 114 gr~i~V~~a~~ 124 (136)
T 2hgl_A 114 HRYIEVFKSHR 124 (136)
T ss_dssp SSEEEEEECCH
T ss_pred CEEEEEEECCh
Confidence 99999998653
No 313
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=3.9e-14 Score=110.31 Aligned_cols=82 Identities=21% Similarity=0.370 Sum_probs=67.6
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHH-HHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCce-ecC
Q 013837 172 RHARRVYVGGLPPLANEQAIATFFSQ-VMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGII-FEG 248 (435)
Q Consensus 172 ~~~~~l~V~nlp~~~t~~~l~~~f~~-~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~-~~g 248 (435)
...++|||+|||+.+|+++|+++|.. ||.|..+. ++.+. ++.++|||||+|.+.++|.+|+ .|++.. |.|
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~------i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g 79 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGK------VVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGS 79 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEE------EEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEE------EEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCC
Confidence 45689999999999999999999999 99864321 01111 4556899999999999999999 599999 999
Q ss_pred ceEEEcCCCCCC
Q 013837 249 VAVRVRRPTDYN 260 (435)
Q Consensus 249 ~~l~v~~~~~~~ 260 (435)
+.|.|.++....
T Consensus 80 ~~l~v~~a~~~~ 91 (104)
T 2dhg_A 80 KPVRLSVAIPKA 91 (104)
T ss_dssp SCCCCCBCCCCC
T ss_pred EeEEEEEccCCC
Confidence 999999986544
No 314
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=6e-14 Score=109.04 Aligned_cols=84 Identities=21% Similarity=0.315 Sum_probs=67.4
Q ss_pred hcccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHHhCCceecCc
Q 013837 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGV 249 (435)
Q Consensus 170 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~l~~~~~~g~ 249 (435)
.....++|||+|||+.+|+++|+++|..||.|..+. ++.+..++.++|||||+|.+.++|.+||. ++..|.|+
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~ 83 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQ------VKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGR 83 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEE------EEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEE------EEecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCe
Confidence 345678999999999999999999999999864311 01111235568999999999999999997 57899999
Q ss_pred eEEEcCCCCCC
Q 013837 250 AVRVRRPTDYN 260 (435)
Q Consensus 250 ~l~v~~~~~~~ 260 (435)
.|.|.++....
T Consensus 84 ~l~v~~a~~~~ 94 (103)
T 2cqg_A 84 WCDCKLPNSKQ 94 (103)
T ss_dssp EEEEECCCTTC
T ss_pred EEEEEecCCCC
Confidence 99999987653
No 315
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=9.6e-14 Score=110.37 Aligned_cols=84 Identities=18% Similarity=0.277 Sum_probs=66.8
Q ss_pred hhcccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceec
Q 013837 169 QATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFE 247 (435)
Q Consensus 169 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~ 247 (435)
......++|||+|||..+|+++|+++|..||.|..+.+ +.+..++.++|||||+|.+.++|.+|| .+++ .|.
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i------~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~ 84 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVV------ITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IID 84 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEE------SCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EET
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEE------EEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCC
Confidence 34557799999999999999999999999998533110 111113456899999999999999999 4887 899
Q ss_pred CceEEEcCCCCC
Q 013837 248 GVAVRVRRPTDY 259 (435)
Q Consensus 248 g~~l~v~~~~~~ 259 (435)
|+.|.|.++...
T Consensus 85 g~~l~V~~a~~~ 96 (116)
T 2cqd_A 85 GRKANVNLAYLG 96 (116)
T ss_dssp TEECEEEESTTT
T ss_pred CEEEEEEEcccC
Confidence 999999998654
No 316
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=4.3e-14 Score=112.04 Aligned_cols=82 Identities=15% Similarity=0.182 Sum_probs=66.7
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCc
Q 013837 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGV 249 (435)
Q Consensus 171 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~ 249 (435)
....++|||+|||..+|+++|+++|..||.|..+. +.....+.++|||||+|.+.++|.+|+ .||+..|.|+
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~-------i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 84 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRAD-------ILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDR 84 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEE-------EEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE-------EEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCC
Confidence 34678999999999999999999999999854311 111112345799999999999999999 4999999999
Q ss_pred eEEEcCCCCC
Q 013837 250 AVRVRRPTDY 259 (435)
Q Consensus 250 ~l~v~~~~~~ 259 (435)
.|.|.++...
T Consensus 85 ~l~v~~a~~~ 94 (114)
T 2do0_A 85 PMHVKMDERA 94 (114)
T ss_dssp ECEEEECSCC
T ss_pred EEEEEEcccC
Confidence 9999987654
No 317
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=4.4e-14 Score=107.78 Aligned_cols=77 Identities=23% Similarity=0.386 Sum_probs=64.6
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCc-EEEEEecCHHHHHHHHHhCCceecCce
Q 013837 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKK-FAFVEMRTVEEASNAMALDGIIFEGVA 250 (435)
Q Consensus 172 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g-~afv~f~~~~~a~~a~~l~~~~~~g~~ 250 (435)
...++|||+|||+.+|+++|+++|..||.| ..+......+ ||||+|.+.++|.+|++|++..|.|+.
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v------------~~v~~~~~~g~~afV~f~~~~~a~~ai~l~g~~~~g~~ 73 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPV------------ASVVMDKDKGVFAIVEMGDVGAREAVLSQSQHSLGGHR 73 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCE------------EEEEECSSSCCEEEEEESSHHHHHHHHTCSCCEETTEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCe------------EEEEEcCCCCcEEEEEECCHHHHHHHHhcCCeEECCEE
Confidence 356799999999999999999999999985 3333332222 999999999999999999999999999
Q ss_pred EEEcCCCCCC
Q 013837 251 VRVRRPTDYN 260 (435)
Q Consensus 251 l~v~~~~~~~ 260 (435)
|.|.++....
T Consensus 74 l~V~~a~~~~ 83 (94)
T 2e5g_A 74 LRVRPREQKE 83 (94)
T ss_dssp CCCBCSCCSC
T ss_pred EEEEECCcCC
Confidence 9999876543
No 318
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=6.7e-15 Score=114.28 Aligned_cols=81 Identities=21% Similarity=0.322 Sum_probs=66.6
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCc
Q 013837 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGV 249 (435)
Q Consensus 171 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~ 249 (435)
....++|||+|||..+|+++|+++|..|+.+. .+.+...+.++|||||+|.+.++|.+|| .||+..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~---------~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 82 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSVRAR---------IVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGN 82 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCSEEE---------EEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCeEEE---------EEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 35678999999999999999999999774321 1222234566899999999999999999 5999999999
Q ss_pred eEEEcCCCCCC
Q 013837 250 AVRVRRPTDYN 260 (435)
Q Consensus 250 ~l~v~~~~~~~ 260 (435)
.|.|.++....
T Consensus 83 ~l~V~~a~~~~ 93 (102)
T 2fc8_A 83 KVTLDWAKPKG 93 (102)
T ss_dssp ECEEEECCCCC
T ss_pred EEEEEEecCCC
Confidence 99999987654
No 319
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1e-13 Score=108.89 Aligned_cols=83 Identities=20% Similarity=0.243 Sum_probs=65.8
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHHHHH-hhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhC--CceecC
Q 013837 173 HARRVYVGGLPPLANEQAIATFFSQVMT-AIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALD--GIIFEG 248 (435)
Q Consensus 173 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~-i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~--~~~~~g 248 (435)
..++|||+|||..+|+++|+++|..||. |..+.++ ..+..++.++|||||+|.+.++|..|+ .|+ +..|.|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~-----~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g 81 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVY-----ASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG 81 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECC-----SSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTT
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEE-----ccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecC
Confidence 5689999999999999999999999987 4331110 011112367899999999999999999 585 589999
Q ss_pred ceEEEcCCCCCC
Q 013837 249 VAVRVRRPTDYN 260 (435)
Q Consensus 249 ~~l~v~~~~~~~ 260 (435)
+.|.|.++....
T Consensus 82 ~~l~V~~a~~~~ 93 (109)
T 2dis_A 82 HQIAVDWAEPEI 93 (109)
T ss_dssp BCCEEEESCSSC
T ss_pred CeEEEEEcCCCC
Confidence 999999987654
No 320
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.50 E-value=2.3e-14 Score=115.82 Aligned_cols=84 Identities=21% Similarity=0.190 Sum_probs=67.4
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCc
Q 013837 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGV 249 (435)
Q Consensus 171 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~ 249 (435)
....++|||+|||+.+|+++|+++|..||.|..+.+ +.+..++.++|||||+|.+.++|.+|+ .||+..|.|+
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i------~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 92 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHL------NLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQ 92 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEC------CBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE------EecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCe
Confidence 345789999999999999999999999997533111 111113445899999999999999999 5999999999
Q ss_pred eEEEcCCCCCC
Q 013837 250 AVRVRRPTDYN 260 (435)
Q Consensus 250 ~l~v~~~~~~~ 260 (435)
.|.|.++....
T Consensus 93 ~l~v~~a~~~~ 103 (126)
T 3ex7_B 93 PISVDWCFVRG 103 (126)
T ss_dssp BCEEEESEESS
T ss_pred EEEEEEecCCC
Confidence 99999886543
No 321
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.50 E-value=2.2e-14 Score=106.25 Aligned_cols=72 Identities=19% Similarity=0.256 Sum_probs=60.3
Q ss_pred CCeEEEcCCCCCC------CHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCcee
Q 013837 174 ARRVYVGGLPPLA------NEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIF 246 (435)
Q Consensus 174 ~~~l~V~nlp~~~------t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~ 246 (435)
+++|||+|||..+ |+++|+++|.+||.|..+.+ ...++.++|||||+|.+.++|.+|+ .|||..|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i--------~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~ 72 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFY--------PEEDGKTKGYIFLEYASPAHAVDAVKNADGYKL 72 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEEC--------CCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEe--------cCCCCcEeEEEEEEECCHHHHHHHHHHhcCccc
Confidence 3689999999999 78999999999998544211 1124467899999999999999999 5999999
Q ss_pred cCc-eEEE
Q 013837 247 EGV-AVRV 253 (435)
Q Consensus 247 ~g~-~l~v 253 (435)
.|+ +|.|
T Consensus 73 ~g~~~l~V 80 (81)
T 2krb_A 73 DKQHTFRV 80 (81)
T ss_dssp SSSSCCCC
T ss_pred CCceeEEe
Confidence 999 8877
No 322
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=2.6e-15 Score=116.33 Aligned_cols=79 Identities=27% Similarity=0.191 Sum_probs=65.2
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHHhCCceecCceE
Q 013837 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAV 251 (435)
Q Consensus 172 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~l 251 (435)
...++|||+|||+.+|+++|+++|..||. +.+. ++.+ ..+.++|||||+|.+.++|.+||++|+..|.|+.|
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~------i~~d-~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i 84 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVH------IEIG-PDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYV 84 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEE------EEES-SSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEE------EEEC-CCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEE
Confidence 45689999999999999999999999983 2211 1122 24567899999999999999999999999999999
Q ss_pred EEcCCCC
Q 013837 252 RVRRPTD 258 (435)
Q Consensus 252 ~v~~~~~ 258 (435)
.|.++..
T Consensus 85 ~V~~~~~ 91 (102)
T 1wez_A 85 ELFLNST 91 (102)
T ss_dssp EEEEECC
T ss_pred EEEECCC
Confidence 9987653
No 323
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.50 E-value=6e-15 Score=120.49 Aligned_cols=84 Identities=20% Similarity=0.285 Sum_probs=69.5
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCc
Q 013837 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGV 249 (435)
Q Consensus 171 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~ 249 (435)
....++|||+|||..+|+++|+++|..||.|..+.+ +.+..++.++|||||+|.+.++|.+|+ .||+..|.|+
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i------~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~ 117 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYI------PRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR 117 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEEC------CCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE------EecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 456789999999999999999999999998644211 111224567899999999999999999 5999999999
Q ss_pred eEEEcCCCCCC
Q 013837 250 AVRVRRPTDYN 260 (435)
Q Consensus 250 ~l~v~~~~~~~ 260 (435)
.|.|.++....
T Consensus 118 ~l~V~~a~~~~ 128 (135)
T 2lea_A 118 ELRVQMARYGR 128 (135)
T ss_dssp CCEEEECCCCC
T ss_pred EEEEEECCCCC
Confidence 99999987543
No 324
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.50 E-value=5e-14 Score=113.47 Aligned_cols=82 Identities=16% Similarity=0.148 Sum_probs=68.1
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHH-hCCceecCc
Q 013837 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMA-LDGIIFEGV 249 (435)
Q Consensus 171 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~-l~~~~~~g~ 249 (435)
....++|||+|||..+++++|+++|..||.|..+. +.....+.++|||||+|.+.++|.+|+. ||+..|.|+
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~-------i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 104 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAA-------VDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGR 104 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEE-------EECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEE-------EEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 35678999999999999999999999999864421 1111145678999999999999999995 999999999
Q ss_pred eEEEcCCCCC
Q 013837 250 AVRVRRPTDY 259 (435)
Q Consensus 250 ~l~v~~~~~~ 259 (435)
.|.|.++...
T Consensus 105 ~l~V~~a~~~ 114 (124)
T 2kt5_A 105 PMDIQLVASQ 114 (124)
T ss_dssp EEEEEEECCT
T ss_pred EEEEEEeCCC
Confidence 9999987654
No 325
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.49 E-value=1.5e-14 Score=108.94 Aligned_cols=73 Identities=23% Similarity=0.334 Sum_probs=63.9
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCceE
Q 013837 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAV 251 (435)
Q Consensus 173 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~l 251 (435)
..++|||+|||+.+++++|+++|.+| .|.. +.+..++|||||+|.+.++|.+|+ .|||..+.|++|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~------------~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 70 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKY------------CYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDL 70 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCC------------EEEEGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEE------------EEEeCCCcEEEEEECCHHHHHHHHHHhCCCeECCcEE
Confidence 46799999999999999999999999 6432 333378999999999999999999 599999999999
Q ss_pred EEcCCCC
Q 013837 252 RVRRPTD 258 (435)
Q Consensus 252 ~v~~~~~ 258 (435)
.|.++..
T Consensus 71 ~V~~a~~ 77 (88)
T 1wg1_A 71 IVQLQPT 77 (88)
T ss_dssp EEEECCC
T ss_pred EEEEcCC
Confidence 9998754
No 326
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.49 E-value=3.9e-14 Score=119.00 Aligned_cols=85 Identities=21% Similarity=0.286 Sum_probs=68.4
Q ss_pred hcccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecC
Q 013837 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEG 248 (435)
Q Consensus 170 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g 248 (435)
.....++|||+|||..+|+++|+++|..||.|..+. ++.+..++.++|||||+|.+.++|.+|| .||+..|.|
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 108 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKII------MGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDD 108 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEE------EEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETT
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE------EEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 345678999999999999999999999999854310 0011112456799999999999999999 499999999
Q ss_pred ceEEEcCCCCCC
Q 013837 249 VAVRVRRPTDYN 260 (435)
Q Consensus 249 ~~l~v~~~~~~~ 260 (435)
+.|.|.++....
T Consensus 109 ~~l~V~~a~~~~ 120 (156)
T 1h2v_Z 109 RIIRTDWDAGFK 120 (156)
T ss_dssp EECEEEEESCCC
T ss_pred eEEEEEECCCCC
Confidence 999999987654
No 327
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=1.1e-14 Score=116.35 Aligned_cols=83 Identities=24% Similarity=0.260 Sum_probs=66.6
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEE--EecCCCcEEEEEecCHHHHHHHHHhCCceecC
Q 013837 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNV--YINHEKKFAFVEMRTVEEASNAMALDGIIFEG 248 (435)
Q Consensus 171 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~--~~~~~~g~afv~f~~~~~a~~a~~l~~~~~~g 248 (435)
....++|||+|||+.+|+++|+++|..||.|.+. ...|..+ ..+.++|||||+|.+.++|.+||+.++..|.|
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~-----v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~g 94 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGG-----KEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGK 94 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTG-----GGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCC-----cceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCC
Confidence 3567899999999999999999999999875210 0012222 35667899999999999999999779999999
Q ss_pred ceEEEcCCCC
Q 013837 249 VAVRVRRPTD 258 (435)
Q Consensus 249 ~~l~v~~~~~ 258 (435)
+.|.|..+..
T Consensus 95 R~i~V~~a~~ 104 (123)
T 2dha_A 95 RYIELFRSTA 104 (123)
T ss_dssp CEECCEEECH
T ss_pred eEEEEEECCH
Confidence 9999987653
No 328
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.49 E-value=1.7e-14 Score=110.61 Aligned_cols=75 Identities=15% Similarity=0.298 Sum_probs=64.4
Q ss_pred cccCCeEEEcCCCC-CCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecC
Q 013837 171 TRHARRVYVGGLPP-LANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEG 248 (435)
Q Consensus 171 ~~~~~~l~V~nlp~-~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g 248 (435)
..+.++|||+|||+ .+|+++|+++|..||.|. .+.+ .+|||||+|.+.++|..|+ .|++..+.|
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~------------~v~i--~~g~afV~f~~~~~A~~A~~~l~g~~~~g 72 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIM------------QINI--KNAFGFIQFDNPQSVRDAIECESQEMNFG 72 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCC------------EEEE--ETTEEEEEESCHHHHHHHHHHHTCSSCBT
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEE------------EEEE--eCCEEEEEECCHHHHHHHHHHcCCCeeCC
Confidence 35678999999998 999999999999999753 3333 3899999999999999999 599999999
Q ss_pred ceEEEcCCCCC
Q 013837 249 VAVRVRRPTDY 259 (435)
Q Consensus 249 ~~l~v~~~~~~ 259 (435)
+.|.|.++...
T Consensus 73 ~~l~V~~a~~~ 83 (96)
T 2kvi_A 73 KKLILEVSSSN 83 (96)
T ss_dssp TTBCEEEEECC
T ss_pred cEEEEEEcCcC
Confidence 99999987654
No 329
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.49 E-value=2.2e-14 Score=120.87 Aligned_cols=82 Identities=21% Similarity=0.290 Sum_probs=68.3
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCce
Q 013837 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 250 (435)
Q Consensus 172 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~ 250 (435)
...++|||+|||+.+|+++|+++|..||.|..+.+ +.+..++.++|||||+|.+.++|..|+ .|||..|.|++
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i------~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 141 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYI------PRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRE 141 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEC------CCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE------eecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 45789999999999999999999999998543211 111124567899999999999999999 59999999999
Q ss_pred EEEcCCCCC
Q 013837 251 VRVRRPTDY 259 (435)
Q Consensus 251 l~v~~~~~~ 259 (435)
|.|.++...
T Consensus 142 l~v~~a~~~ 150 (158)
T 2kn4_A 142 LRVQMARYG 150 (158)
T ss_dssp EEEEEECCS
T ss_pred EEEEECCCC
Confidence 999988754
No 330
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=2.3e-14 Score=112.99 Aligned_cols=77 Identities=19% Similarity=0.288 Sum_probs=65.9
Q ss_pred ccCCeEEEcCCCCCCCHHHHH---HHHHHHHHhhcCCCCCCCCceEEEEec---------CCCcEEEEEecCHHHHHHHH
Q 013837 172 RHARRVYVGGLPPLANEQAIA---TFFSQVMTAIGGNSAGPGDAVVNVYIN---------HEKKFAFVEMRTVEEASNAM 239 (435)
Q Consensus 172 ~~~~~l~V~nlp~~~t~~~l~---~~f~~~G~i~~~~~~~~~~~v~~~~~~---------~~~g~afv~f~~~~~a~~a~ 239 (435)
...++|||+|||+.+++++|. ++|.+||.|.. +.+. .++|||||+|.+.++|.+|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~------------v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai 80 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHK------------VVINNSTSYAGSQGPSASAYVTYIRSEDALRAI 80 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEE------------EEEECCSSCCSSSCCCEEEEEEESSHHHHHHHH
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEE------------EEEecCCCcCccCCCCeEEEEEECcHHHHHHHH
Confidence 356799999999999999999 99999998543 3322 34589999999999999999
Q ss_pred -HhCCceecCceEEEcCCCCCC
Q 013837 240 -ALDGIIFEGVAVRVRRPTDYN 260 (435)
Q Consensus 240 -~l~~~~~~g~~l~v~~~~~~~ 260 (435)
.||+..|.|++|.|.++....
T Consensus 81 ~~lng~~~~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 81 QCVNNVVVDGRTLKASLGTTKY 102 (111)
T ss_dssp HHHTTEEETTEEEEEESCCCCS
T ss_pred HHhCCCEECCEEEEEEeccccc
Confidence 599999999999999987654
No 331
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=2.7e-14 Score=111.49 Aligned_cols=78 Identities=17% Similarity=0.218 Sum_probs=63.7
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHHhCCceecCceEE
Q 013837 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVR 252 (435)
Q Consensus 173 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~l~ 252 (435)
...+|||+|||+.+|+++|+++|..| .|..+. ++.+ ..+.++|||||+|.+.++|.+||.+|+..|+|+.|.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~------i~~d-~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~ 86 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVH------LLKD-HVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVE 86 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEE------ECCC-TTCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEE------EEEC-CCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEE
Confidence 45799999999999999999999999 542211 0111 125678999999999999999999999999999999
Q ss_pred EcCCCC
Q 013837 253 VRRPTD 258 (435)
Q Consensus 253 v~~~~~ 258 (435)
|..+..
T Consensus 87 V~~a~~ 92 (109)
T 2dnn_A 87 VSPATE 92 (109)
T ss_dssp EEECCH
T ss_pred EEECCc
Confidence 987653
No 332
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.49 E-value=4.2e-15 Score=116.39 Aligned_cols=81 Identities=17% Similarity=0.207 Sum_probs=67.5
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHHHHH---hhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHHhCCceec
Q 013837 171 TRHARRVYVGGLPPLANEQAIATFFSQVMT---AIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFE 247 (435)
Q Consensus 171 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~---i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~l~~~~~~ 247 (435)
....++|||+|||+.+|+++|+++|..||. |..+. ++.+.. +.++|||||+|.+.++|.+||.+++..|+
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~------i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~ 80 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIH------FLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMG 80 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEE------CCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSS
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEE------EEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeC
Confidence 356789999999999999999999999887 43321 122222 67899999999999999999999999999
Q ss_pred CceEEEcCCCC
Q 013837 248 GVAVRVRRPTD 258 (435)
Q Consensus 248 g~~l~v~~~~~ 258 (435)
|+.|.|.++..
T Consensus 81 gr~i~V~~a~~ 91 (107)
T 2lmi_A 81 QRYVEVYEINN 91 (107)
T ss_dssp SSCCCCEECCH
T ss_pred CeEEEEEECCH
Confidence 99999988754
No 333
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.49 E-value=3.1e-14 Score=124.64 Aligned_cols=77 Identities=17% Similarity=0.270 Sum_probs=72.1
Q ss_pred CCeEEEcCCCC-CCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 013837 294 PDRVFVGGLPY-YFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (435)
Q Consensus 294 ~~~l~V~nLp~-~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~ 372 (435)
.++|||+|||. .+|+++|+++|+.||.|..|.|+.++ +|||||+|.+.++|.+|+..|||..|.|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 46899999999 99999999999999999999998874 7899999999999999999999999999999999997
Q ss_pred CCC
Q 013837 373 ASS 375 (435)
Q Consensus 373 ~~~ 375 (435)
...
T Consensus 78 ~~~ 80 (198)
T 1qm9_A 78 HQN 80 (198)
T ss_dssp CCS
T ss_pred CCC
Confidence 653
No 334
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.49 E-value=8.3e-14 Score=116.14 Aligned_cols=78 Identities=28% Similarity=0.412 Sum_probs=68.3
Q ss_pred hcccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecC-CCcEEEEEecCHHHHHHHH-HhCCceec
Q 013837 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINH-EKKFAFVEMRTVEEASNAM-ALDGIIFE 247 (435)
Q Consensus 170 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~-~~g~afv~f~~~~~a~~a~-~l~~~~~~ 247 (435)
.....++|||+|||+.+|+++|+++|..||. |..+.+.. ++|||||+|.+.++|..|+ .|||..|.
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~------------i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 136 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYGP------------LRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLC 136 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHSC------------EEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhCC------------EEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 3456789999999999999999999999997 55565554 4999999999999999999 59999999
Q ss_pred CceEEEcCCCCC
Q 013837 248 GVAVRVRRPTDY 259 (435)
Q Consensus 248 g~~l~v~~~~~~ 259 (435)
|++|.|.++.+.
T Consensus 137 g~~l~v~~a~~~ 148 (150)
T 2i2y_A 137 GCRVRVELSNGE 148 (150)
T ss_dssp SSCCEEEECCCC
T ss_pred CeEEEEEEcCCC
Confidence 999999987643
No 335
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.49 E-value=1.2e-13 Score=108.45 Aligned_cols=76 Identities=14% Similarity=0.087 Sum_probs=66.3
Q ss_pred CCCCeEEEcCCCCCC----------CHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCcee
Q 013837 292 EGPDRVFVGGLPYYF----------TETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKM 361 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~----------te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~ 361 (435)
.++++|.|.||-... .++||+++|++||.|+.|.|.++. ++|||||+|.+.++|.+|+..|||.+|
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 457799999994322 236899999999999999987653 489999999999999999999999999
Q ss_pred CCeEEEEEEc
Q 013837 362 GDKTLTVRRA 371 (435)
Q Consensus 362 ~g~~l~V~~a 371 (435)
+|+.|.|.|+
T Consensus 81 ~GR~i~v~~~ 90 (114)
T 3s6e_A 81 AGKMITAAYV 90 (114)
T ss_dssp TTEECEEEEE
T ss_pred CCEEEEEEEE
Confidence 9999999998
No 336
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.48 E-value=1e-13 Score=114.16 Aligned_cols=81 Identities=22% Similarity=0.349 Sum_probs=65.3
Q ss_pred hcccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecC
Q 013837 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEG 248 (435)
Q Consensus 170 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g 248 (435)
.....++|||+|||..+|+++|+++|..||.|..+.+ +.+..++.++|||||+|.+.++|.+|+ .||+..|.|
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i------~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 132 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQI------PLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG 132 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEEC------CCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETT
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEE------eecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 3456789999999999999999999999998533110 111122456899999999999999999 699999999
Q ss_pred ceEEEcCC
Q 013837 249 VAVRVRRP 256 (435)
Q Consensus 249 ~~l~v~~~ 256 (435)
+.|.|.++
T Consensus 133 ~~l~v~~A 140 (140)
T 2ku7_A 133 RTIRVNLA 140 (140)
T ss_dssp EEEEEEC-
T ss_pred EEEEEEeC
Confidence 99999874
No 337
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=7.9e-14 Score=106.84 Aligned_cols=76 Identities=18% Similarity=0.312 Sum_probs=65.1
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEE---EecCCCcEEEEEecCHHHHHHHH-HhCCceec
Q 013837 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNV---YINHEKKFAFVEMRTVEEASNAM-ALDGIIFE 247 (435)
Q Consensus 172 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~---~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~ 247 (435)
...++|||+|||+.+|+++|+++|..||. |..+ ......+.|||+|.+.++|..|+ .|||..|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~------------v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~ 80 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGV------------VESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLE 80 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSC------------EEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCS
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCC------------eEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 35689999999999999999999999997 4444 22334566999999999999999 59999999
Q ss_pred CceEEEcCCCCC
Q 013837 248 GVAVRVRRPTDY 259 (435)
Q Consensus 248 g~~l~v~~~~~~ 259 (435)
|++|.|.++.+.
T Consensus 81 g~~l~V~~a~~~ 92 (96)
T 2e44_A 81 NFTLKVAYIPDE 92 (96)
T ss_dssp SCBCEEEECCCC
T ss_pred CcEEEEEEcCcc
Confidence 999999988754
No 338
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=4.2e-15 Score=109.00 Aligned_cols=75 Identities=12% Similarity=0.250 Sum_probs=61.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHH-hCCceecCceEEE
Q 013837 175 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMA-LDGIIFEGVAVRV 253 (435)
Q Consensus 175 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~-l~~~~~~g~~l~v 253 (435)
++|||+|||..+++++|+++|..||.|..+. .+.+..++.++|||||+|.+.++|.+|++ ++ ..+.|++|.|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~------i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v 73 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECL------VMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDP 73 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEE------EECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE------EecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEE
Confidence 4799999999999999999999999864311 11111245678999999999999999995 66 9999999999
Q ss_pred cCC
Q 013837 254 RRP 256 (435)
Q Consensus 254 ~~~ 256 (435)
.++
T Consensus 74 ~~a 76 (77)
T 1uaw_A 74 KVA 76 (77)
T ss_dssp EEC
T ss_pred Eec
Confidence 875
No 339
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.3e-14 Score=108.58 Aligned_cols=79 Identities=19% Similarity=0.333 Sum_probs=64.5
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCceE
Q 013837 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAV 251 (435)
Q Consensus 173 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~l 251 (435)
..++|||+|||+.+++++|+++|..||.|..+. .+.+...+.++|||||+|.+.++|..|+ .|||..|.|+.|
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~------i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~ 77 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTK------AILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMA 77 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEE------EECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE------EEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEE
Confidence 568999999999999999999999999854311 0111123456899999999999999999 599999999999
Q ss_pred EEcCCC
Q 013837 252 RVRRPT 257 (435)
Q Consensus 252 ~v~~~~ 257 (435)
+|.++.
T Consensus 78 ~~~~~~ 83 (85)
T 1x4e_A 78 KQSGPS 83 (85)
T ss_dssp CSSCCC
T ss_pred eecCCC
Confidence 998754
No 340
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.47 E-value=1.1e-13 Score=126.57 Aligned_cols=78 Identities=32% Similarity=0.538 Sum_probs=71.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 013837 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA 371 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a 371 (435)
...++|||+|||..+|+++|+++|+.||.|..|.|.++ +|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 44578999999999999999999999999999998653 789999999999999999999999999999999999
Q ss_pred cCCC
Q 013837 372 TASS 375 (435)
Q Consensus 372 ~~~~ 375 (435)
.+..
T Consensus 94 ~~~~ 97 (261)
T 3sde_A 94 THGA 97 (261)
T ss_dssp CCSS
T ss_pred ccCC
Confidence 7643
No 341
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.47 E-value=4.1e-13 Score=117.37 Aligned_cols=75 Identities=21% Similarity=0.491 Sum_probs=66.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhc----C-------CeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeC
Q 013837 294 PDRVFVGGLPYYFTETQIKELLESF----G-------TLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMG 362 (435)
Q Consensus 294 ~~~l~V~nLp~~~te~~l~~~F~~~----G-------~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~ 362 (435)
.++|||+|||..+|+++|+++|+.| | .|..+.+ +.++|||||+|.+.++|.+|| .|||..|.
T Consensus 4 ~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~~ 76 (198)
T 2yh0_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (198)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEET
T ss_pred eeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEEc
Confidence 5799999999999999999999999 5 4555554 345899999999999999999 79999999
Q ss_pred CeEEEEEEccCCC
Q 013837 363 DKTLTVRRATASS 375 (435)
Q Consensus 363 g~~l~V~~a~~~~ 375 (435)
|+.|.|.++....
T Consensus 77 g~~i~v~~~~~~~ 89 (198)
T 2yh0_A 77 GQSLKIRRPHDYQ 89 (198)
T ss_dssp TEEEEEECCCCCC
T ss_pred CceEEEeCCCCCC
Confidence 9999999997654
No 342
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.20 E-value=3.9e-15 Score=118.47 Aligned_cols=90 Identities=20% Similarity=0.234 Sum_probs=71.3
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCC--CCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceec
Q 013837 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGP--GDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFE 247 (435)
Q Consensus 171 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~--~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~ 247 (435)
..+.++|||+|||..+++++|+++|..||.|..+..... ..++.+..++.++|||||+|.+.++|.+|+ .||+..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 346789999999999999999999999999754110000 012333455678999999999999999999 59999999
Q ss_pred CceEEEcCCCCCC
Q 013837 248 GVAVRVRRPTDYN 260 (435)
Q Consensus 248 g~~l~v~~~~~~~ 260 (435)
|+.|.|.++....
T Consensus 84 g~~l~V~~a~~~~ 96 (116)
T 2lcw_A 84 GNPIKVSFATRRA 96 (116)
Confidence 9999999986543
No 343
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=4.2e-13 Score=102.69 Aligned_cols=76 Identities=12% Similarity=0.182 Sum_probs=63.7
Q ss_pred CCeEEEcCCC-------CCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEE
Q 013837 294 PDRVFVGGLP-------YYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTL 366 (435)
Q Consensus 294 ~~~l~V~nLp-------~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l 366 (435)
...|.|.-.. ..+|+++|+++|++||.|..|.|+ +.++|||||+|.+.++|..||..+++ +.|+.|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeE
Confidence 3466665543 458999999999999999999987 35799999999999999999997554 679999
Q ss_pred EEEEccCCCC
Q 013837 367 TVRRATASSG 376 (435)
Q Consensus 367 ~V~~a~~~~~ 376 (435)
+|.|+..+..
T Consensus 83 ~V~~a~~~~~ 92 (100)
T 2d9o_A 83 KISWLEGQPQ 92 (100)
T ss_dssp EEECSSCCCC
T ss_pred EEEEccCCCC
Confidence 9999987653
No 344
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.46 E-value=1.7e-14 Score=109.15 Aligned_cols=79 Identities=29% Similarity=0.415 Sum_probs=62.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCceEEE
Q 013837 175 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVAVRV 253 (435)
Q Consensus 175 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~l~v 253 (435)
++|||+|||..+++++|+++|..||.|..+.+ +.+..++.++|||||+|.+.+ |..|+ .|||..+.|+.|.|
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i------~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V 74 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKL------IYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRV 74 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEE------CCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSE
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEE------EEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEE
Confidence 58999999999999999999999998643110 111123567899999999999 99999 59999999999999
Q ss_pred cCCCCCC
Q 013837 254 RRPTDYN 260 (435)
Q Consensus 254 ~~~~~~~ 260 (435)
.++....
T Consensus 75 ~~a~~~~ 81 (90)
T 2ki2_A 75 TEANPKK 81 (90)
T ss_dssp EEC----
T ss_pred EEcCCCC
Confidence 9886543
No 345
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.46 E-value=5.8e-14 Score=111.35 Aligned_cols=73 Identities=26% Similarity=0.361 Sum_probs=61.1
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCce
Q 013837 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 250 (435)
Q Consensus 172 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~ 250 (435)
...++|||+|||+.+|+++|+++|..||. |..+.+... |||||+|.+.++|.+|| .||+..|.|+.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~------------v~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 80 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGD------------VCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHE 80 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSC------------EEEEEECTT-SEEEEEESSHHHHHHHHHHHTTCBCCCTT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCC------------eEEEEEecC-CEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 35689999999999999999999999997 556666555 99999999999999999 59999999998
Q ss_pred -----EEEcCCC
Q 013837 251 -----VRVRRPT 257 (435)
Q Consensus 251 -----l~v~~~~ 257 (435)
|.|....
T Consensus 81 ~~~~~i~v~~~~ 92 (115)
T 3beg_B 81 GETAYIRVKVDG 92 (115)
T ss_dssp SCCCBCEEEECC
T ss_pred eeeEEEEeccCC
Confidence 5555443
No 346
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.46 E-value=1.8e-13 Score=113.59 Aligned_cols=77 Identities=17% Similarity=0.194 Sum_probs=64.6
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecC--c
Q 013837 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEG--V 249 (435)
Q Consensus 173 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g--~ 249 (435)
...+|||+||++.+|+++|+++|++||.|.. |. +.....+|||||+|.+.++|..|+ .|||..|.| +
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~---------V~-i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~ 114 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLK---------II-TFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACC 114 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEE---------EE-EEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCS
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEE---------EE-EEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCc
Confidence 3457999999999999999999999998643 21 223446789999999999999999 699999966 9
Q ss_pred eEEEcCCCCC
Q 013837 250 AVRVRRPTDY 259 (435)
Q Consensus 250 ~l~v~~~~~~ 259 (435)
.|+|.|+...
T Consensus 115 ~L~V~~Ak~~ 124 (164)
T 1sjr_A 115 TLRIDFSKLT 124 (164)
T ss_dssp CEEEEECSSS
T ss_pred EEEEEEecCC
Confidence 9999998754
No 347
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=4e-14 Score=112.24 Aligned_cols=81 Identities=12% Similarity=0.266 Sum_probs=65.3
Q ss_pred hcccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCcee--
Q 013837 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIF-- 246 (435)
Q Consensus 170 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~-- 246 (435)
.....++|||+|||+.+|+++|+++|..||.|..+. ++.+ ..+.++|||||+|.+.++|.+|+ .|||..|
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~------i~~~-~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~ 93 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTR------ILRD-SSGTSRGVGFARMESTEKCEAVIGHFNGKFIKT 93 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEE------EEEC-SSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE------EEEC-CCCCcceEEEEEECCHHHHHHHHHHhCCCEEcC
Confidence 345678999999999999999999999999864321 0111 13556899999999999999999 5999999
Q ss_pred ------cCceEEEcCCC
Q 013837 247 ------EGVAVRVRRPT 257 (435)
Q Consensus 247 ------~g~~l~v~~~~ 257 (435)
.+++|.|.++.
T Consensus 94 ~~~~~~~~~~l~v~~a~ 110 (114)
T 1x5o_A 94 PPGVSAPTEPLLCKFSG 110 (114)
T ss_dssp CTTSCCCSSCBEEEECC
T ss_pred CccccCCCCceeEEccC
Confidence 57788888775
No 348
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.45 E-value=6.2e-15 Score=120.26 Aligned_cols=82 Identities=24% Similarity=0.184 Sum_probs=66.2
Q ss_pred hcccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHHhCCceecCc
Q 013837 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGV 249 (435)
Q Consensus 170 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~l~~~~~~g~ 249 (435)
.....++|||+|||+++|+++|+++|..|| ++.+.+ +.+. .+.++|||||+|.+.++|.+||++|+..|.|+
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i------~~d~-~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR 113 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHI------EIGP-DGRVTGEADVEFATHEEAVAAMSKDRANMQHR 113 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEEC------CCSS-SSCSSCCCEEECSHHHHHHHHTTCCSCSSSSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEE------EECC-CCCCceEEEEEeCCHHHHHHHHhhCCCEECCE
Confidence 345678999999999999999999999998 533211 2221 26789999999999999999999999999999
Q ss_pred eEEEcCCCCC
Q 013837 250 AVRVRRPTDY 259 (435)
Q Consensus 250 ~l~v~~~~~~ 259 (435)
.|.|.++...
T Consensus 114 ~i~V~~a~~~ 123 (139)
T 2hgn_A 114 YIELFLNSTT 123 (139)
T ss_dssp CCCCEECCCS
T ss_pred EEEEEECCCC
Confidence 9999876543
No 349
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.44 E-value=1.2e-14 Score=116.26 Aligned_cols=75 Identities=20% Similarity=0.224 Sum_probs=62.9
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe-----cCCCcEEEEEecCHHHHHHHHHhCCcee
Q 013837 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI-----NHEKKFAFVEMRTVEEASNAMALDGIIF 246 (435)
Q Consensus 172 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~-----~~~~g~afv~f~~~~~a~~a~~l~~~~~ 246 (435)
...++|||+|||+.+|+++|+++|..| .|+. ..+.+ +.++|||||+|.+.++|.+||++++..|
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~----------~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l 108 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVP----------NGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERI 108 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEE----------EEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-Ccee----------eEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEE
Confidence 456889999999999999999999999 4320 03332 5678999999999999999998888999
Q ss_pred cCceEEEcCCC
Q 013837 247 EGVAVRVRRPT 257 (435)
Q Consensus 247 ~g~~l~v~~~~ 257 (435)
.|+.|.|.++.
T Consensus 109 ~gR~I~V~~a~ 119 (126)
T 2hgm_A 109 GHRYIEVFKSS 119 (126)
T ss_dssp TTBCCCCEEEC
T ss_pred CCEEEEEEECC
Confidence 99999998653
No 350
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.44 E-value=1.6e-14 Score=128.91 Aligned_cols=80 Identities=15% Similarity=0.144 Sum_probs=65.4
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHHHH--HhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCc
Q 013837 173 HARRVYVGGLPPLANEQAIATFFSQVM--TAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGV 249 (435)
Q Consensus 173 ~~~~l~V~nlp~~~t~~~l~~~f~~~G--~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~ 249 (435)
..++|||+|||+.+|+++|+++|..|| .|+.+. ++.+..++.++|||||+|.+.++|.+|| .||+..|.|+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~------i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr 140 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIK------FFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQ 140 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEE------EEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTB
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEE------EEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCE
Confidence 567999999999999999999999999 754311 1111124567899999999999999999 5999999999
Q ss_pred eEEEcCCCC
Q 013837 250 AVRVRRPTD 258 (435)
Q Consensus 250 ~l~v~~~~~ 258 (435)
.|.|.++..
T Consensus 141 ~l~V~~a~~ 149 (229)
T 3q2s_C 141 NPVVTPVNK 149 (229)
T ss_dssp CCEEEECCH
T ss_pred EeEEEECCC
Confidence 999998764
No 351
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.43 E-value=1.9e-13 Score=109.14 Aligned_cols=75 Identities=19% Similarity=0.243 Sum_probs=63.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcE-EEEEecCHHHHHHHH-HhCCceecC--c
Q 013837 174 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKF-AFVEMRTVEEASNAM-ALDGIIFEG--V 249 (435)
Q Consensus 174 ~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~-afv~f~~~~~a~~a~-~l~~~~~~g--~ 249 (435)
-..|||+||++.+|+++|+++|++||.|.. |... ...+|| |||+|.+.++|..|+ .|||..|.| +
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~---------V~i~--~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~ 96 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLK---------IITF--TKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACC 96 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEE---------EEEE--EETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEE
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEE---------EEEE--cCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCc
Confidence 346889999999999999999999998643 2211 235687 999999999999999 699999998 9
Q ss_pred eEEEcCCCCC
Q 013837 250 AVRVRRPTDY 259 (435)
Q Consensus 250 ~l~v~~~~~~ 259 (435)
.|+|.|++..
T Consensus 97 ~LrI~~ak~~ 106 (130)
T 3zzy_A 97 TLRIDFSKLT 106 (130)
T ss_dssp EEEEEECSCS
T ss_pred EEEEEecCCC
Confidence 9999998754
No 352
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.43 E-value=2.6e-13 Score=107.94 Aligned_cols=73 Identities=16% Similarity=0.102 Sum_probs=60.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcE-EEEEecCHHHHHHHH-HhCCceecC--ce
Q 013837 175 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKF-AFVEMRTVEEASNAM-ALDGIIFEG--VA 250 (435)
Q Consensus 175 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~-afv~f~~~~~a~~a~-~l~~~~~~g--~~ 250 (435)
..|||+||++.+|+++|+++|++||.|.. +.+....|| |||+|.+.++|..|+ .|||..|.| +.
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~------------v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~ 93 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQR------------IVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCT 93 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEE------------EEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSE
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEE------------EEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCeE
Confidence 35789999999999999999999998643 222112486 999999999999999 699999987 69
Q ss_pred EEEcCCCCC
Q 013837 251 VRVRRPTDY 259 (435)
Q Consensus 251 l~v~~~~~~ 259 (435)
|.|.++...
T Consensus 94 l~V~~Ak~~ 102 (124)
T 2e5i_A 94 LKIEYARPT 102 (124)
T ss_dssp EEEECCSCS
T ss_pred EEEEEecCC
Confidence 999988754
No 353
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.43 E-value=1.3e-13 Score=116.75 Aligned_cols=83 Identities=20% Similarity=0.166 Sum_probs=66.2
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCce
Q 013837 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 250 (435)
Q Consensus 172 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~ 250 (435)
...++|||+|||+.+|+++|.++|..||.|..+. ++.+..++.++|||||+|.+.++|.+|| .|||..|.|+.
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~------i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 143 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIH------LNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQT 143 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEE------EEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEE------EEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 4567999999999999999999999999854310 0011113445799999999999999999 59999999999
Q ss_pred EEEcCCCCCC
Q 013837 251 VRVRRPTDYN 260 (435)
Q Consensus 251 l~v~~~~~~~ 260 (435)
|.|.++....
T Consensus 144 l~V~~a~~~~ 153 (165)
T 1rk8_A 144 IQVDWCFVKG 153 (165)
T ss_dssp CEEEESEECC
T ss_pred EEEEEecCCC
Confidence 9999876543
No 354
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.43 E-value=4.1e-13 Score=114.54 Aligned_cols=75 Identities=21% Similarity=0.483 Sum_probs=66.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhc----C-------CeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeC
Q 013837 294 PDRVFVGGLPYYFTETQIKELLESF----G-------TLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMG 362 (435)
Q Consensus 294 ~~~l~V~nLp~~~te~~l~~~F~~~----G-------~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~ 362 (435)
.++|||+|||..+|+++|+++|++| | .|..+.+.. ++|||||+|.+.++|.+|+ .|||..|.
T Consensus 4 ~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~~~~~~~ 76 (172)
T 2g4b_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (172)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred ccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-HhCCcEec
Confidence 4689999999999999999999999 6 666666643 4799999999999999999 79999999
Q ss_pred CeEEEEEEccCCC
Q 013837 363 DKTLTVRRATASS 375 (435)
Q Consensus 363 g~~l~V~~a~~~~ 375 (435)
|+.|.|.++....
T Consensus 77 g~~i~v~~~~~~~ 89 (172)
T 2g4b_A 77 GQSLKIRRPHDYQ 89 (172)
T ss_dssp TEECEEECCSSCC
T ss_pred CceeeecCCcccC
Confidence 9999999987653
No 355
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.43 E-value=1.3e-13 Score=134.52 Aligned_cols=83 Identities=16% Similarity=0.148 Sum_probs=70.2
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCce
Q 013837 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 250 (435)
Q Consensus 172 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~ 250 (435)
...++|||+|||+.+|+++|.++|..||.|+.+. ++.+..++.++|||||+|.+.++|.+|| .|||..|.|+.
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~------i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~ 173 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIH------MVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRR 173 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEE------eeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEE
Confidence 3457999999999999999999999999875532 1233345678999999999999999999 69999999999
Q ss_pred EEEcCCCCCC
Q 013837 251 VRVRRPTDYN 260 (435)
Q Consensus 251 l~v~~~~~~~ 260 (435)
|.|.++....
T Consensus 174 i~V~~a~~~~ 183 (437)
T 3pgw_S 174 VLVDVERGRT 183 (437)
T ss_pred EEEEEeCCCC
Confidence 9999987543
No 356
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.42 E-value=1.6e-13 Score=109.68 Aligned_cols=74 Identities=23% Similarity=0.345 Sum_probs=65.3
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCce
Q 013837 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 250 (435)
Q Consensus 172 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~ 250 (435)
...++|||+|| .+|+++|+++|..||.| ..+.+..++|||||+|.+.++|.+|+ .|+|..|.|+.
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I------------~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~ 102 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNI------------IDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQ 102 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCC------------SCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCB
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCE------------EEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 46789999996 79999999999999985 33444588999999999999999999 69999999999
Q ss_pred EEEcCCCCC
Q 013837 251 VRVRRPTDY 259 (435)
Q Consensus 251 l~v~~~~~~ 259 (435)
|.|.++...
T Consensus 103 l~V~~a~~~ 111 (121)
T 2bz2_A 103 LKVNIARKQ 111 (121)
T ss_dssp CEEEECCSS
T ss_pred EEEEEeCCC
Confidence 999998754
No 357
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.42 E-value=2.6e-13 Score=102.15 Aligned_cols=75 Identities=28% Similarity=0.450 Sum_probs=57.7
Q ss_pred hcccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEec-CCCcEEEEEecCHHHHHHHHHhCCc--ee
Q 013837 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN-HEKKFAFVEMRTVEEASNAMALDGI--IF 246 (435)
Q Consensus 170 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~-~~~g~afv~f~~~~~a~~a~~l~~~--~~ 246 (435)
......+|||+|||+++|+++|+++|++||. |..+.+. .++|||||+|.+.++|.+ +++. .+
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~------------i~~v~i~~~srGfaFV~F~~~~~A~~---~~~~~~~~ 71 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGE------------VVDVFIPKPFRAFAFVTFADDKVAQS---LCGEDLII 71 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSC------------EEEEECCSSCCSEEEEEESCHHHHHH---HTTCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCC------------EEEEEEeeCCCCEEEEEECCHHHHHH---HcCCCccc
Confidence 3456789999999999999999999999997 4444443 379999999999999984 3444 45
Q ss_pred cCceEEEcCCCCC
Q 013837 247 EGVAVRVRRPTDY 259 (435)
Q Consensus 247 ~g~~l~v~~~~~~ 259 (435)
.|+.|.|.++.+.
T Consensus 72 ~g~~v~v~~a~~k 84 (89)
T 3d2w_A 72 KGISVHISNAEPK 84 (89)
T ss_dssp TTEEEEEEECC--
T ss_pred CCEEEEEEEcCCC
Confidence 6999999987654
No 358
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.40 E-value=5.3e-13 Score=124.83 Aligned_cols=76 Identities=21% Similarity=0.292 Sum_probs=66.1
Q ss_pred CCCCCeEEEcC--CCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeC---Ce-
Q 013837 291 AEGPDRVFVGG--LPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMG---DK- 364 (435)
Q Consensus 291 ~~~~~~l~V~n--Lp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~---g~- 364 (435)
..++.+|||+| |++.+|+++|+++|++||.|..|.|.. ++|||||+|.+.++|++||++|||..+. |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 46678999999 578999999999999999999887653 4799999999999999999999999883 44
Q ss_pred -EEEEEEcc
Q 013837 365 -TLTVRRAT 372 (435)
Q Consensus 365 -~l~V~~a~ 372 (435)
.|.|.|+.
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 68888884
No 359
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.38 E-value=9.5e-14 Score=107.69 Aligned_cols=80 Identities=18% Similarity=0.309 Sum_probs=65.5
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHHhCCceecCce
Q 013837 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVA 250 (435)
Q Consensus 171 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~ 250 (435)
....++|||+|||..+|+++|+++|..||.|..+. .+.+ ..+.++|||||+|.+.++|.+|+. ++..|+|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~------i~~~-~~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~ 77 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVK------IITD-RTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKK 77 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEE------EEEC-TTSCEEEEEEEEESSCCCHHHHTT-CCCEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEE------EEEC-CCCCccceEEEEECCHHHHHHHHh-CCCeECCEE
Confidence 44668999999999999999999999999864311 0111 134568999999999999999999 999999999
Q ss_pred EEEcCCCC
Q 013837 251 VRVRRPTD 258 (435)
Q Consensus 251 l~v~~~~~ 258 (435)
|.|.++..
T Consensus 78 l~v~~a~~ 85 (102)
T 2xs2_A 78 LKLGPAIR 85 (102)
T ss_dssp CEEEEEEE
T ss_pred EEEEECCc
Confidence 99987653
No 360
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=3.4e-13 Score=101.47 Aligned_cols=75 Identities=24% Similarity=0.375 Sum_probs=61.0
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEec-CCCcEEEEEecCHHHHHHHHHhCCceecCceE
Q 013837 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN-HEKKFAFVEMRTVEEASNAMALDGIIFEGVAV 251 (435)
Q Consensus 173 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~-~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~l 251 (435)
..++|||+|||..+|+++|+++|..||.| ..+.+. .++|||||+|.+.++|.+|+.. ...+.|+.|
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i------------~~v~i~~~~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l 70 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDV------------MDVFIPKPFRAFAFVTFADDQIAQSLCGE-DLIIKGISV 70 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCC------------CEEECCSSCCSCCEEECSCHHHHHHTTTC-EEEETTEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCe------------eEEEEecCCCCEEEEEECCHHHHHHHhcC-CceeCCEEE
Confidence 56899999999999999999999999975 333332 3689999999999999865432 456689999
Q ss_pred EEcCCCCCC
Q 013837 252 RVRRPTDYN 260 (435)
Q Consensus 252 ~v~~~~~~~ 260 (435)
.|.++....
T Consensus 71 ~v~~a~~~~ 79 (88)
T 1wf0_A 71 HISNAEPKH 79 (88)
T ss_dssp EEECCCCCC
T ss_pred EEEecCCCC
Confidence 999876543
No 361
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.37 E-value=4.8e-13 Score=118.64 Aligned_cols=78 Identities=22% Similarity=0.333 Sum_probs=68.4
Q ss_pred cccCCeEEEcCCCCCC---------CHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-H
Q 013837 171 TRHARRVYVGGLPPLA---------NEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-A 240 (435)
Q Consensus 171 ~~~~~~l~V~nlp~~~---------t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~ 240 (435)
....++|||+||+..+ ++++|+++|.+||. |..+.+..++|||||+|.+.++|..|+ .
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~------------I~~v~v~~~kG~AFV~F~~~~~Ae~A~~a 198 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGD------------IDRIRYVESKNCGFVKFKYQANAEFAKEA 198 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSC------------EEEEEEEGGGTEEEEEESSHHHHHHHHHH
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCC------------EEEEEEECCCCEEEEEeCCHHHHHHHHHH
Confidence 4567899999999998 79999999999997 666666678999999999999999999 6
Q ss_pred hCCcee------------cCceEEEcCCCCCC
Q 013837 241 LDGIIF------------EGVAVRVRRPTDYN 260 (435)
Q Consensus 241 l~~~~~------------~g~~l~v~~~~~~~ 260 (435)
|+|..| .|+.|.|.|+.+..
T Consensus 199 m~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 199 MSNQTLLLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp HTTCCCCCTTSTTGGGGGGSCCCEEEECC---
T ss_pred hCCCEEeccccccccccCCCCEEEEEEccCCC
Confidence 999999 89999999987654
No 362
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.32 E-value=2.9e-13 Score=105.94 Aligned_cols=77 Identities=12% Similarity=0.081 Sum_probs=63.1
Q ss_pred CeEEEcCC----CCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecC----HHH----HHHHHH--
Q 013837 175 RRVYVGGL----PPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRT----VEE----ASNAMA-- 240 (435)
Q Consensus 175 ~~l~V~nl----p~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~----~~~----a~~a~~-- 240 (435)
.+|||+|| |+.+++.+|+++|..||+|..+. .+.+..++.++|||||+|.+ +++ |.+|+.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~------li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~ 76 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFE------AFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKH 76 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEE------EEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHT
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEE------EEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHh
Confidence 68999999 99999999999999999986642 35555677889999999996 433 777764
Q ss_pred -hCCceecCceEEEcCCC
Q 013837 241 -LDGIIFEGVAVRVRRPT 257 (435)
Q Consensus 241 -l~~~~~~g~~l~v~~~~ 257 (435)
++|..|.|++|.|..-.
T Consensus 77 ~lng~~I~Gr~irV~ln~ 94 (136)
T 2j8a_A 77 ESSGCFIMGFKFEVILNK 94 (136)
T ss_dssp TTTCEEETTEEEEEEECC
T ss_pred hhcCCeecCcEEEEEECc
Confidence 79999999999998643
No 363
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.31 E-value=2.1e-12 Score=112.04 Aligned_cols=81 Identities=19% Similarity=0.240 Sum_probs=66.9
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEE--ecCCCcEEEEEecCHHHHHHHHHhCCceecC
Q 013837 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVY--INHEKKFAFVEMRTVEEASNAMALDGIIFEG 248 (435)
Q Consensus 171 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~--~~~~~g~afv~f~~~~~a~~a~~l~~~~~~g 248 (435)
....++|||+|||+.+|+++|.++|..||.|.. |.... .+.++|||||+|.+.++|.+|++..+..|.|
T Consensus 106 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~---------v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~G 176 (193)
T 2voo_A 106 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLN---------IQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKE 176 (193)
T ss_dssp HHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEE---------EEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETT
T ss_pred ccccCEEEecCCCCcCCHHHHHHHHhcCCCEEE---------EEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECC
Confidence 345689999999999999999999999998543 21111 2456899999999999999999866779999
Q ss_pred ceEEEcCCCCCC
Q 013837 249 VAVRVRRPTDYN 260 (435)
Q Consensus 249 ~~l~v~~~~~~~ 260 (435)
+.|.|.+..++.
T Consensus 177 r~l~V~~~~~y~ 188 (193)
T 2voo_A 177 TDLLILFKDDYF 188 (193)
T ss_dssp EECEEEETTTC-
T ss_pred EEEEEEEhHHHH
Confidence 999999887764
No 364
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=3.2e-12 Score=101.09 Aligned_cols=76 Identities=21% Similarity=0.247 Sum_probs=57.4
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe---cCCCcEEEEEecCHHHHHHHH-HhCCceec
Q 013837 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI---NHEKKFAFVEMRTVEEASNAM-ALDGIIFE 247 (435)
Q Consensus 172 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~---~~~~g~afv~f~~~~~a~~a~-~l~~~~~~ 247 (435)
...++|||+|||+.+|+++|+++|.+||.|. +.+ +.+..+ +.++|||||+|.+.++|.+|| .++ .++
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~------~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~ 76 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDW------PHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EED 76 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EEC------TTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EET
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEE------eecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcC
Confidence 4578999999999999999999999999863 111 111112 567999999999999999999 462 356
Q ss_pred CceEEEcCC
Q 013837 248 GVAVRVRRP 256 (435)
Q Consensus 248 g~~l~v~~~ 256 (435)
|+.|.+...
T Consensus 77 G~~~~~~~~ 85 (114)
T 2dnl_A 77 GKLYLCVSS 85 (114)
T ss_dssp TEEEEEECC
T ss_pred CcEEEeccC
Confidence 666665543
No 365
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.25 E-value=1.2e-11 Score=95.83 Aligned_cols=77 Identities=19% Similarity=0.109 Sum_probs=62.6
Q ss_pred ccCCeEEEcCCCC-----CCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEE----ecCCCcEEEEEecCHHHHHHHH-Hh
Q 013837 172 RHARRVYVGGLPP-----LANEQAIATFFSQVMTAIGGNSAGPGDAVVNVY----INHEKKFAFVEMRTVEEASNAM-AL 241 (435)
Q Consensus 172 ~~~~~l~V~nlp~-----~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~----~~~~~g~afv~f~~~~~a~~a~-~l 241 (435)
.++++|+|.||.. .-++++|+++|++||.|.. +..+. .+.++|||||+|.+.++|.+|+ .|
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~---------v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~l 76 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGK---------CVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDL 76 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEE---------EEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEE---------EEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHH
Confidence 4578999999963 2378999999999998654 21121 1357899999999999999999 69
Q ss_pred CCceecCceEEEcCCC
Q 013837 242 DGIIFEGVAVRVRRPT 257 (435)
Q Consensus 242 ~~~~~~g~~l~v~~~~ 257 (435)
||..|.|+.|.|.++.
T Consensus 77 nG~~~~Gr~i~v~~a~ 92 (105)
T 2pe8_A 77 NGRYFGGRVVKACFYN 92 (105)
T ss_dssp TTCEETTEECEEEECC
T ss_pred CCCEECCcEEEEEEcC
Confidence 9999999999999875
No 366
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.23 E-value=1.4e-11 Score=97.08 Aligned_cols=78 Identities=22% Similarity=0.245 Sum_probs=63.7
Q ss_pred ccCCeEEEcCCCCCCC-----------HHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-
Q 013837 172 RHARRVYVGGLPPLAN-----------EQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM- 239 (435)
Q Consensus 172 ~~~~~l~V~nlp~~~t-----------~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~- 239 (435)
...++|+|.||....+ +++|+++|.+||.|.. + .+....++|||||+|.+.++|.+|+
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~---------v-~i~~~~~~G~afV~f~~~~~A~~Ai~ 82 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRK---------L-LLFDRHPDGVASVSFRDPEEADYCIQ 82 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSE---------E-EEETTCTTCEEEEECSCHHHHHHHHH
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeE---------E-EEecCCCCEEEEEEECCHHHHHHHHH
Confidence 4678999999944332 6899999999998644 2 2233347899999999999999999
Q ss_pred HhCCceecCceEEEcCCCCC
Q 013837 240 ALDGIIFEGVAVRVRRPTDY 259 (435)
Q Consensus 240 ~l~~~~~~g~~l~v~~~~~~ 259 (435)
.|||..|.|++|.|.++.+.
T Consensus 83 ~lng~~~~gr~l~v~~a~~~ 102 (112)
T 2dit_A 83 TLDGRWFGGRQITAQAWDGT 102 (112)
T ss_dssp HSTTCEETTEECEEEECCSC
T ss_pred HcCCCEECCcEEEEEEeCCC
Confidence 69999999999999987653
No 367
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.19 E-value=6.5e-11 Score=86.69 Aligned_cols=72 Identities=19% Similarity=0.290 Sum_probs=60.8
Q ss_pred CCeEEEcCCCC----CCCH----HHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeE
Q 013837 294 PDRVFVGGLPY----YFTE----TQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKT 365 (435)
Q Consensus 294 ~~~l~V~nLp~----~~te----~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~ 365 (435)
..||+|...+. +.-. .+|.+.|.+||.|..++|+.+. +||+|.+.++|.+||+ |||..++|+.
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~Gr~ 77 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLNRT 77 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETTEE
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCCeE
Confidence 34777776652 2333 6789999999999999998873 8999999999999999 9999999999
Q ss_pred EEEEEccCC
Q 013837 366 LTVRRATAS 374 (435)
Q Consensus 366 l~V~~a~~~ 374 (435)
|+|+++++.
T Consensus 78 LkV~lkt~d 86 (91)
T 2dnr_A 78 ITIALKSPS 86 (91)
T ss_dssp EEEEECCCS
T ss_pred EEEEeCCCC
Confidence 999999754
No 368
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.18 E-value=7.5e-11 Score=92.44 Aligned_cols=75 Identities=13% Similarity=0.127 Sum_probs=67.7
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcC-HHHHHHHHHHhC--CceeCCeEE
Q 013837 291 AEGPDRVFVGGLPYY-FTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQD-PAVTDIACAALN--GLKMGDKTL 366 (435)
Q Consensus 291 ~~~~~~l~V~nLp~~-~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~-~~~A~~Al~~l~--g~~~~g~~l 366 (435)
....+.|+|+||+.. +++++|+++|+.||.|..|.+..+.. .|||+|.+ ..+|..|+..|| |..|+|..+
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 455678999999999 99999999999999999999988754 59999999 899999999994 889999999
Q ss_pred EEEEc
Q 013837 367 TVRRA 371 (435)
Q Consensus 367 ~V~~a 371 (435)
++...
T Consensus 89 ~~evL 93 (121)
T 1owx_A 89 TWEVL 93 (121)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 99876
No 369
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.15 E-value=5.3e-11 Score=111.32 Aligned_cols=75 Identities=17% Similarity=0.235 Sum_probs=63.6
Q ss_pred cccCCeEEEcC--CCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceec
Q 013837 171 TRHARRVYVGG--LPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFE 247 (435)
Q Consensus 171 ~~~~~~l~V~n--lp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~ 247 (435)
..+.++|||+| |++.+|+++|+++|.+||. |..+.+..++|||||+|.+.++|.+|+ .|||..+.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~------------V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~ 82 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGL------------VDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVV 82 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSC------------EEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCC------------eEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCccc
Confidence 35678999999 5789999999999999997 566677778999999999999999999 69999884
Q ss_pred ---Cc--eEEEcCCC
Q 013837 248 ---GV--AVRVRRPT 257 (435)
Q Consensus 248 ---g~--~l~v~~~~ 257 (435)
|+ +|.|.+..
T Consensus 83 ~~~g~~~~ly~~~~~ 97 (345)
T 3tht_A 83 DDLGQKITLYLNFVE 97 (345)
T ss_dssp CTTSCEEECEEEECS
T ss_pred cccCCceEEEEEEee
Confidence 44 67777753
No 370
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.07 E-value=4.6e-10 Score=99.80 Aligned_cols=79 Identities=14% Similarity=0.123 Sum_probs=66.5
Q ss_pred CCeEEEcCCC-----CCCCHHHHHHHHHhcCCeeEEEEeecCC----CCCcceEEEEEEcCHHHHHHHHHHhCCceeCCe
Q 013837 294 PDRVFVGGLP-----YYFTETQIKELLESFGTLHGFDLVKDRD----TGNSKGYGFCVYQDPAVTDIACAALNGLKMGDK 364 (435)
Q Consensus 294 ~~~l~V~nLp-----~~~te~~l~~~F~~~G~v~~v~i~~~~~----tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~ 364 (435)
...+.+.|+- ..-.+++|.+.|++||.|..+.|+.+.. ++.++|++||+|.+.++|.+|+..|||.+|+|+
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr 203 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 203 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCe
Confidence 3456665552 2235689999999999999999986543 458999999999999999999999999999999
Q ss_pred EEEEEEcc
Q 013837 365 TLTVRRAT 372 (435)
Q Consensus 365 ~l~V~~a~ 372 (435)
.|.|.|+.
T Consensus 204 ~i~~~~~~ 211 (222)
T 3dxb_A 204 KVVAEVYD 211 (222)
T ss_dssp BCEEEECC
T ss_pred EEEEEEcC
Confidence 99999984
No 371
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.06 E-value=2.5e-10 Score=88.35 Aligned_cols=73 Identities=18% Similarity=0.124 Sum_probs=59.4
Q ss_pred cCCeEEEcCC--CCCC--------CHHHHHHHHHHHHHhhcCCCCCCCCceEEEEec--------CCCcEEEEEecCHHH
Q 013837 173 HARRVYVGGL--PPLA--------NEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN--------HEKKFAFVEMRTVEE 234 (435)
Q Consensus 173 ~~~~l~V~nl--p~~~--------t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~--------~~~g~afv~f~~~~~ 234 (435)
+++.|.|.|+ |..+ .+++|++.|++||.|.. +.+. .++|||||+|.+.++
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~------------v~i~~~~~~~~~~~~G~~fV~f~~~~~ 71 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKS------------IEIPRPVDGVEVPGCGKIFVEFTSVFD 71 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEE------------EECCCCBTTBCCTTTTEEEEEESSHHH
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEE------------EEEeccCCCCCcCCcEEEEEEECCHHH
Confidence 4678999998 3333 24789999999998543 3332 468999999999999
Q ss_pred HHHHH-HhCCceecCceEEEcCCC
Q 013837 235 ASNAM-ALDGIIFEGVAVRVRRPT 257 (435)
Q Consensus 235 a~~a~-~l~~~~~~g~~l~v~~~~ 257 (435)
|.+|+ .|||..|.|+.|.|.+..
T Consensus 72 A~~Ai~~lnG~~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 72 CQKAMQGLTGRKFANRVVVTKYCD 95 (105)
T ss_dssp HHHHHHHHTTCEETTEECEEEEEC
T ss_pred HHHHHHHhCCCEeCCCEEEEEEeC
Confidence 99999 699999999999998753
No 372
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=1.3e-09 Score=83.12 Aligned_cols=74 Identities=11% Similarity=0.065 Sum_probs=57.4
Q ss_pred CCeEEEcCCC-------CCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe-cCCCcEEEEEecCHHHHHHHHHhCCce
Q 013837 174 ARRVYVGGLP-------PLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI-NHEKKFAFVEMRTVEEASNAMALDGII 245 (435)
Q Consensus 174 ~~~l~V~nlp-------~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~-~~~~g~afv~f~~~~~a~~a~~l~~~~ 245 (435)
..+|.|.-.. ..+|+++|+++|.+||.| ..+.+ +.++|||||+|.+.++|..|+.. +..
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V------------~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~-~~~ 76 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEV------------LNLVLSSKKPGTAVVEFATVKAAELAVQN-EVG 76 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCE------------EEEEEESSSSSEEEEEESCHHHHHHHHHT-CCB
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCE------------EEEEEccCCCCEEEEEECCHHHHHHHHHh-cCC
Confidence 3456665544 458999999999999985 33333 57899999999999999999953 344
Q ss_pred ecCceEEEcCCCCCC
Q 013837 246 FEGVAVRVRRPTDYN 260 (435)
Q Consensus 246 ~~g~~l~v~~~~~~~ 260 (435)
+.|++|.|.|+....
T Consensus 77 ~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 77 LVDNPLKISWLEGQP 91 (100)
T ss_dssp CSSSBCEEECSSCCC
T ss_pred CCCCeEEEEEccCCC
Confidence 689999999987553
No 373
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.02 E-value=4e-10 Score=82.82 Aligned_cols=73 Identities=14% Similarity=0.169 Sum_probs=61.2
Q ss_pred CCCCeEEEcCCCCC-----CCH----HHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeC
Q 013837 292 EGPDRVFVGGLPYY-----FTE----TQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMG 362 (435)
Q Consensus 292 ~~~~~l~V~nLp~~-----~te----~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~ 362 (435)
.+..||+|..++.. +-. .+|.+.|..||.|..++|+.++ +||+|.+.++|.+||+ |||..++
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEET
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeC
Confidence 34458999887643 222 5688999999999999999873 9999999999999999 9999999
Q ss_pred CeEEEEEEccC
Q 013837 363 DKTLTVRRATA 373 (435)
Q Consensus 363 g~~l~V~~a~~ 373 (435)
|+.|+|++..+
T Consensus 84 Gr~L~V~~k~~ 94 (95)
T 1ufw_A 84 GRAVKISGPSS 94 (95)
T ss_dssp TEEEEEECCCC
T ss_pred CeEEEEeccCC
Confidence 99999998643
No 374
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.98 E-value=1.3e-10 Score=89.75 Aligned_cols=66 Identities=17% Similarity=0.315 Sum_probs=53.5
Q ss_pred EcCCCCCCCHHHHHHHH------------HHHHHhhcCCCCCCCCceEEEEe-----cCCCcEEEEEecCHHHHHHHH-H
Q 013837 179 VGGLPPLANEQAIATFF------------SQVMTAIGGNSAGPGDAVVNVYI-----NHEKKFAFVEMRTVEEASNAM-A 240 (435)
Q Consensus 179 V~nlp~~~t~~~l~~~f------------~~~G~i~~~~~~~~~~~v~~~~~-----~~~~g~afv~f~~~~~a~~a~-~ 240 (435)
+.|||..+++++|.+.| ++||.|. .+.+ +.++|||||+|.+.++|.+|+ .
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~------------~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~ 87 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVE------------EMNVCDNLGDHLVGNVYVKFRREEDAEKAVID 87 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEE------------EEEECCSSSSSSEEEEEEEESCHHHHHHHHHH
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceE------------EEEEEeCCCCCccEEEEEEECCHHHHHHHHHH
Confidence 56777778887777666 9999854 3333 346899999999999999999 6
Q ss_pred hCCceecCceEEEcCC
Q 013837 241 LDGIIFEGVAVRVRRP 256 (435)
Q Consensus 241 l~~~~~~g~~l~v~~~ 256 (435)
|||..+.|++|.|.++
T Consensus 88 lng~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 88 LNNRWFNGQPIHAELS 103 (104)
T ss_dssp HTTCEETTEECCEEEC
T ss_pred HCCCEECCEEEEEEEc
Confidence 9999999999999864
No 375
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.89 E-value=1.7e-09 Score=85.29 Aligned_cols=80 Identities=15% Similarity=0.041 Sum_probs=61.6
Q ss_pred ccCCeEEEcCCCC--C---CCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe----cCCCcEEEEEecCHHHHHHHH-Hh
Q 013837 172 RHARRVYVGGLPP--L---ANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI----NHEKKFAFVEMRTVEEASNAM-AL 241 (435)
Q Consensus 172 ~~~~~l~V~nlp~--~---~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~----~~~~g~afv~f~~~~~a~~a~-~l 241 (435)
.++++|+|.|+-. . -.+++|++.|.+||.|..+. ++.+... +.++|||||+|.+.++|.+|+ .|
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~------I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~L 91 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVI------IYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQAL 91 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEE------EEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEE------EeecCCCcccCCcceEEEEEEECCHHHHHHHHHHH
Confidence 4688999999942 2 23789999999999975521 1111111 234699999999999999999 69
Q ss_pred CCceecCceEEEcCCC
Q 013837 242 DGIIFEGVAVRVRRPT 257 (435)
Q Consensus 242 ~~~~~~g~~l~v~~~~ 257 (435)
||..|.|+.|.|.+..
T Consensus 92 nGr~f~GR~i~v~~~~ 107 (118)
T 3ue2_A 92 NGRWFAGRKVVAEVYD 107 (118)
T ss_dssp TTCEETTEECEEEEEC
T ss_pred CCCEECCcEEEEEEcC
Confidence 9999999999998754
No 376
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.85 E-value=3.9e-09 Score=82.60 Aligned_cols=73 Identities=15% Similarity=0.193 Sum_probs=57.8
Q ss_pred cCCeEEEcCCCCCC----------CHHHHHHHHHHHHHhhcCCCCCCCCceEEEEe--cCCCcEEEEEecCHHHHHHHH-
Q 013837 173 HARRVYVGGLPPLA----------NEQAIATFFSQVMTAIGGNSAGPGDAVVNVYI--NHEKKFAFVEMRTVEEASNAM- 239 (435)
Q Consensus 173 ~~~~l~V~nlp~~~----------t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~--~~~~g~afv~f~~~~~a~~a~- 239 (435)
++++|.|.|+=... .+++|++.|++||.|.. +.+ ...+|||||+|.+.++|.+|+
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~------------v~i~~~~~~G~~fV~f~~~e~A~~Ai~ 73 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIH------------IYVDKNSAQGNVYVKCPSIAAAIAAVN 73 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSE------------EEECTTCTTCCEEEECSSHHHHHHHHH
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEE------------EEEecCCCcEEEEEEECCHHHHHHHHH
Confidence 46678888874321 24688999999998643 333 235899999999999999999
Q ss_pred HhCCceecCceEEEcCCC
Q 013837 240 ALDGIIFEGVAVRVRRPT 257 (435)
Q Consensus 240 ~l~~~~~~g~~l~v~~~~ 257 (435)
.|||..|.|+.|.|.++.
T Consensus 74 ~lnG~~f~GR~i~v~~~~ 91 (114)
T 3s6e_A 74 ALHGRWFAGKMITAAYVP 91 (114)
T ss_dssp HHTTCEETTEECEEEEEC
T ss_pred HhCCCEECCEEEEEEEEc
Confidence 699999999999999764
No 377
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.75 E-value=1.6e-08 Score=74.03 Aligned_cols=70 Identities=14% Similarity=0.148 Sum_probs=55.7
Q ss_pred CCeEEEcCCCC----CCCH----HHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHHhCCce
Q 013837 174 ARRVYVGGLPP----LANE----QAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGII 245 (435)
Q Consensus 174 ~~~l~V~nlp~----~~t~----~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~l~~~~ 245 (435)
.-||+|.-++. .... .+|.+.|.+||. |+.+++...+ +||+|.+.++|.+|++|||..
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~------------Vi~vr~~~d~--~fVtF~d~~sAlaAi~mnG~~ 72 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGE------------VILIRFVEDK--MWVTFLEGSSALNVLSLNGKE 72 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCC------------EEEEEECSSS--EEEEESSHHHHHHGGGGTTCE
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCC------------eEEEEEecCC--EEEEECChHHHHHHHhcCCeE
Confidence 44788877662 2323 668888999986 6666665544 899999999999999999999
Q ss_pred ecCceEEEcCCC
Q 013837 246 FEGVAVRVRRPT 257 (435)
Q Consensus 246 ~~g~~l~v~~~~ 257 (435)
+.|+.|+|+.++
T Consensus 73 v~Gr~LkV~lkt 84 (91)
T 2dnr_A 73 LLNRTITIALKS 84 (91)
T ss_dssp ETTEEEEEEECC
T ss_pred eCCeEEEEEeCC
Confidence 999999999765
No 378
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.72 E-value=1.7e-08 Score=78.98 Aligned_cols=72 Identities=10% Similarity=0.034 Sum_probs=62.8
Q ss_pred ccCCeEEEcCCCCC-CCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecC-HHHHHHHH-Hh--CCcee
Q 013837 172 RHARRVYVGGLPPL-ANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRT-VEEASNAM-AL--DGIIF 246 (435)
Q Consensus 172 ~~~~~l~V~nlp~~-~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~-~~~a~~a~-~l--~~~~~ 246 (435)
...+.|+|+||+.. ++.++|+++|+.||. |..|.+......|||+|.+ ..+|..|+ .+ ++..|
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~------------V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i 83 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGE------------IKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQL 83 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCC------------EEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCBCT
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCC------------EEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCcEE
Confidence 45788999999999 999999999999986 7778887788899999999 89999999 57 47889
Q ss_pred cCceEEEcC
Q 013837 247 EGVAVRVRR 255 (435)
Q Consensus 247 ~g~~l~v~~ 255 (435)
.|..+.+..
T Consensus 84 ~g~~~~~ev 92 (121)
T 1owx_A 84 RNKEVTWEV 92 (121)
T ss_dssp TSSSEEEEE
T ss_pred eCcEEEEEE
Confidence 998888864
No 379
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.69 E-value=1.2e-07 Score=70.92 Aligned_cols=73 Identities=15% Similarity=0.129 Sum_probs=67.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhc-----CCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEE
Q 013837 293 GPDRVFVGGLPYYFTETQIKELLESF-----GTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLT 367 (435)
Q Consensus 293 ~~~~l~V~nLp~~~te~~l~~~F~~~-----G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~ 367 (435)
..++|-+-|||..+++..|+.++++| |.|..|.+..|. |-|+|+|.+...|-+|.-+|+|..|.|++|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 35789999999999999999999999 999999998874 3599999999999999999999999999999
Q ss_pred EEEc
Q 013837 368 VRRA 371 (435)
Q Consensus 368 V~~a 371 (435)
|.-.
T Consensus 94 ~gTv 97 (117)
T 2l9w_A 94 SGTI 97 (117)
T ss_dssp EECH
T ss_pred ecCH
Confidence 9865
No 380
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.62 E-value=3.4e-08 Score=72.60 Aligned_cols=71 Identities=23% Similarity=0.280 Sum_probs=55.5
Q ss_pred cCCeEEEcCCCCC-----CCH----HHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHHhCC
Q 013837 173 HARRVYVGGLPPL-----ANE----QAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDG 243 (435)
Q Consensus 173 ~~~~l~V~nlp~~-----~t~----~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~l~~ 243 (435)
+.-||+|.-++.. ... .+|.+.|.+||+| +.+++...+ +||+|.+.++|.+||+|||
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~V------------ilvr~v~d~--~fVtF~d~~sAl~AI~ldG 79 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTI------------VLVRINQGQ--MLVTFADSHSALSVLDVDG 79 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCC------------SEEEEETTE--EEEECSCSHHHHHHHHGGG
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCE------------EEEEEecCc--EEEEEcChHHHHHHHhcCC
Confidence 3458999888643 222 5688899999873 344544444 9999999999999999999
Q ss_pred ceecCceEEEcCCC
Q 013837 244 IIFEGVAVRVRRPT 257 (435)
Q Consensus 244 ~~~~g~~l~v~~~~ 257 (435)
..++|+.|+|++..
T Consensus 80 ~~v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 80 MKVKGRAVKISGPS 93 (95)
T ss_dssp SEETTEEEEEECCC
T ss_pred eeeCCeEEEEeccC
Confidence 99999999998643
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.44 E-value=1.1e-06 Score=65.79 Aligned_cols=76 Identities=14% Similarity=0.209 Sum_probs=64.2
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecCce
Q 013837 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEGVA 250 (435)
Q Consensus 172 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g~~ 250 (435)
...++|-|-|||..++...|+.|++++-.|. ...+..+.+-.+.+=|+|+|.+...|-+|. +|+|.+|.|++
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~-------~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef~gr~ 91 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHIN-------EKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQFQGKV 91 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCC-------TTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEETTEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccC-------ccceeEEEEecCCCceEEEEccchhhHHHHhhcCCeeecCeE
Confidence 4578999999999999999999999993221 112556666677888999999999999998 89999999999
Q ss_pred EEEc
Q 013837 251 VRVR 254 (435)
Q Consensus 251 l~v~ 254 (435)
|.+.
T Consensus 92 Lr~g 95 (117)
T 2l9w_A 92 IRSG 95 (117)
T ss_dssp EEEE
T ss_pred EEec
Confidence 9997
No 382
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.26 E-value=4.6e-06 Score=62.04 Aligned_cols=74 Identities=19% Similarity=0.261 Sum_probs=60.5
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHHhCCceecCceEE
Q 013837 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEGVAVR 252 (435)
Q Consensus 173 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~l~~~~~~g~~l~ 252 (435)
..++|.|.|||..+.++.|.-+|+.--. .-+..|..+.... +-|+|+|.+.+.|...|+-..+.|++..|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rr-------sGGG~V~~v~~~~--~~AvItF~d~~va~rVL~k~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRR-------SGGGPVLSWQRLG--CGGVLTFREPADAERVLAQADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTT-------TCCCCEEEEEEET--TEEEEEESSHHHHHHHHTCSCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCc-------CCCceeeEEEEcC--CcEEEEEcChHHHHHHhcCCcceecCeEEE
Confidence 3578999999999999999999997200 0134577777655 889999999999999998878999999999
Q ss_pred EcC
Q 013837 253 VRR 255 (435)
Q Consensus 253 v~~ 255 (435)
|..
T Consensus 78 V~P 80 (104)
T 2dhx_A 78 LRP 80 (104)
T ss_dssp EEE
T ss_pred EEc
Confidence 974
No 383
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.01 E-value=3.9e-06 Score=74.18 Aligned_cols=78 Identities=15% Similarity=0.039 Sum_probs=56.0
Q ss_pred CCeEEEcCCCC-----CCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEec----CCCcEEEEEecCHHHHHHHH-HhCC
Q 013837 174 ARRVYVGGLPP-----LANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYIN----HEKKFAFVEMRTVEEASNAM-ALDG 243 (435)
Q Consensus 174 ~~~l~V~nlp~-----~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~----~~~g~afv~f~~~~~a~~a~-~l~~ 243 (435)
...+.+.|+-. .-.+++|.+.|.+||.|.... ++.+...+ .++|++||+|.+.++|.+|+ .|||
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~------v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~g 197 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVI------IYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNG 197 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEE------EEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEE------EecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcC
Confidence 34455555432 235688999999999864421 01111111 56799999999999999999 6999
Q ss_pred ceecCceEEEcCCC
Q 013837 244 IIFEGVAVRVRRPT 257 (435)
Q Consensus 244 ~~~~g~~l~v~~~~ 257 (435)
..|.|++|.|.+..
T Consensus 198 r~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 198 RWFAGRKVVAEVYD 211 (222)
T ss_dssp CBSSSSBCEEEECC
T ss_pred ceECCeEEEEEEcC
Confidence 99999999998754
No 384
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.98 E-value=2.1e-05 Score=58.78 Aligned_cols=75 Identities=12% Similarity=0.096 Sum_probs=63.1
Q ss_pred CCCCeEEEcCCCCCC-C----HHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEE
Q 013837 292 EGPDRVFVGGLPYYF-T----ETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTL 366 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~-t----e~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l 366 (435)
..+++|+|.||+..+ + .+.++++|..|+++......+.- .=..|.|.++++|.+|-..||+..|.|+.|
T Consensus 3 ~~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~ 76 (104)
T 1wey_A 3 SGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEM 76 (104)
T ss_dssp SCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEEC
T ss_pred CCCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCcee
Confidence 345789999998765 2 25789999999998887776642 247899999999999999999999999999
Q ss_pred EEEEcc
Q 013837 367 TVRRAT 372 (435)
Q Consensus 367 ~V~~a~ 372 (435)
+|-|+.
T Consensus 77 r~YFgq 82 (104)
T 1wey_A 77 KLYFAQ 82 (104)
T ss_dssp EEECCC
T ss_pred EEEecC
Confidence 999995
No 385
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.85 E-value=9.2e-05 Score=54.50 Aligned_cols=78 Identities=14% Similarity=0.175 Sum_probs=62.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCC--cceEEEEEEcCHHHHHHHHHHhCCceeC---C--eEEE
Q 013837 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGN--SKGYGFCVYQDPAVTDIACAALNGLKMG---D--KTLT 367 (435)
Q Consensus 295 ~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~--~~G~afV~f~~~~~A~~Al~~l~g~~~~---g--~~l~ 367 (435)
++|.|++||+.+||+++.+.+..+..+........+.+.. .-.-|||.|.+.+++....+.++|+.|- | ....
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 4799999999999999999999998877776666543322 2246999999999999999999999883 2 3456
Q ss_pred EEEcc
Q 013837 368 VRRAT 372 (435)
Q Consensus 368 V~~a~ 372 (435)
|+||-
T Consensus 82 VE~AP 86 (91)
T 1uw4_A 82 VEFAP 86 (91)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 77774
No 386
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.73 E-value=0.00019 Score=52.70 Aligned_cols=56 Identities=18% Similarity=0.385 Sum_probs=47.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHh
Q 013837 292 EGPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l 356 (435)
.....++| ++|..+...||.++|+.||.| .|..+-|. -|||.|.+.+.|..|+..+
T Consensus 14 ~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 14 KRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred CCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 33456677 999999999999999999976 47777763 6999999999999999965
No 387
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.66 E-value=0.00063 Score=50.59 Aligned_cols=75 Identities=20% Similarity=0.268 Sum_probs=61.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHh-----cCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEE
Q 013837 292 EGPDRVFVGGLPYYFTETQIKELLES-----FGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTL 366 (435)
Q Consensus 292 ~~~~~l~V~nLp~~~te~~l~~~F~~-----~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l 366 (435)
...++|.|.|||..+.++.|.-+|+. -|.|..+.... +-|+|+|.+.+.|+..|+ ...+.|.|..|
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~-k~~H~L~~~~L 76 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLA-QADHELHGAQL 76 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHT-CSCCBSSSSBC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhc-CCcceecCeEE
Confidence 34579999999999999999999997 25687776643 368999999999999987 34789999999
Q ss_pred EEEEccCCC
Q 013837 367 TVRRATASS 375 (435)
Q Consensus 367 ~V~~a~~~~ 375 (435)
.|....+..
T Consensus 77 sV~P~~~~~ 85 (104)
T 2dhx_A 77 SLRPAPPRA 85 (104)
T ss_dssp EEEECCCCC
T ss_pred EEEcCCCCC
Confidence 998765543
No 388
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.60 E-value=0.00028 Score=54.36 Aligned_cols=72 Identities=17% Similarity=0.181 Sum_probs=59.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCC-eEEEEEEc
Q 013837 293 GPDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGD-KTLTVRRA 371 (435)
Q Consensus 293 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g-~~l~V~~a 371 (435)
..+.|.|-+.|... ...|...|++||.|++..... + ..+..|.|.+..+|++||. .||..|+| ..|-|...
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~----~--~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN----T--GNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS----S--SSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC----C--CCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 35689999999884 677889999999998777621 1 3478999999999999999 69999984 77888886
Q ss_pred c
Q 013837 372 T 372 (435)
Q Consensus 372 ~ 372 (435)
.
T Consensus 95 ~ 95 (119)
T 1wwh_A 95 I 95 (119)
T ss_dssp C
T ss_pred C
Confidence 4
No 389
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.25 E-value=0.0012 Score=50.79 Aligned_cols=73 Identities=19% Similarity=0.259 Sum_probs=59.6
Q ss_pred cccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHHhCCceecC-c
Q 013837 171 TRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIIFEG-V 249 (435)
Q Consensus 171 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~l~~~~~~g-~ 249 (435)
......|.|-+.|+.. ...|...|.+||.| +..........-.|.|.+..+|.+||..||..|.| .
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~I------------v~~~~~~~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~ 87 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNI------------LKHVMSNTGNWMHIRYQSKLQARKALSKDGRIFGESI 87 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCE------------EEEEECSSSSEEEEEESSHHHHHHHHTTTTCEETTTE
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcE------------EEeccCCCCCeEEEEeCCHHHHHHHHHhCCeEecCCE
Confidence 3457789999999986 57788999999984 44444556789999999999999999999999985 6
Q ss_pred eEEEcCC
Q 013837 250 AVRVRRP 256 (435)
Q Consensus 250 ~l~v~~~ 256 (435)
.|-|.+.
T Consensus 88 mIGV~p~ 94 (119)
T 1wwh_A 88 MIGVKPC 94 (119)
T ss_dssp ECEEEEC
T ss_pred EEEEEEC
Confidence 6777654
No 390
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.21 E-value=0.00044 Score=51.69 Aligned_cols=73 Identities=11% Similarity=0.018 Sum_probs=58.7
Q ss_pred cCCeEEEcCCCCCC-CH----HHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCcee
Q 013837 173 HARRVYVGGLPPLA-NE----QAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIF 246 (435)
Q Consensus 173 ~~~~l~V~nlp~~~-t~----~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~ 246 (435)
.+.+|+|.||+..+ +. +.++++|..|+. +.....-++-.-..|.|.++++|.+|- +|++..+
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~------------~~tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~~f 71 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDK------------DTTFQYFKSFKRVRINFSNPLSAADARLRLHKTEF 71 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCS------------SCEEEEETTTTEEEEECSSTTHHHHHHHTSTTSEE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCc------------CcceeecCcceEEEEEeCChHHHHHHHHHhcccee
Confidence 35689999998865 32 567888888865 333455556667899999999999999 7999999
Q ss_pred cCceEEEcCCC
Q 013837 247 EGVAVRVRRPT 257 (435)
Q Consensus 247 ~g~~l~v~~~~ 257 (435)
+|+.|+|-++.
T Consensus 72 ~g~~~r~YFgq 82 (104)
T 1wey_A 72 LGKEMKLYFAQ 82 (104)
T ss_dssp TTEECEEECCC
T ss_pred cCceeEEEecC
Confidence 99999999876
No 391
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.11 E-value=0.0006 Score=50.37 Aligned_cols=78 Identities=17% Similarity=0.165 Sum_probs=54.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCC--cceEEEEEEcCHHHHHHHHHHhCCceeCC-----eEEE
Q 013837 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGN--SKGYGFCVYQDPAVTDIACAALNGLKMGD-----KTLT 367 (435)
Q Consensus 295 ~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~--~~G~afV~f~~~~~A~~Al~~l~g~~~~g-----~~l~ 367 (435)
-+|.|+.||+.+||+++.+.+..+-.+........+.+.+ .-.-|||.|.+.++.....+.++|..|-+ -...
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a~ 89 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPAV 89 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEEE
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeeeE
Confidence 4799999999999999877777654443322222222111 11348999999999999999999998832 3566
Q ss_pred EEEcc
Q 013837 368 VRRAT 372 (435)
Q Consensus 368 V~~a~ 372 (435)
|+||-
T Consensus 90 VE~AP 94 (97)
T 2l08_A 90 VEFAP 94 (97)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 77773
No 392
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.02 E-value=0.0011 Score=48.87 Aligned_cols=53 Identities=19% Similarity=0.410 Sum_probs=45.3
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhC
Q 013837 296 RVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALN 357 (435)
Q Consensus 296 ~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~ 357 (435)
.++| ++|..+...||.++|+.||.| .|..+-|. -|||.|.+.+.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 4556 999999999999999999954 57777763 69999999999999999764
No 393
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.83 E-value=0.0013 Score=51.31 Aligned_cols=77 Identities=22% Similarity=0.277 Sum_probs=56.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCeeE-EEEeecC------------CCC-CcceEEEEEEcCHHHHHHHHHHhCCc
Q 013837 294 PDRVFVGGLPYYFTETQIKELLESFGTLHG-FDLVKDR------------DTG-NSKGYGFCVYQDPAVTDIACAALNGL 359 (435)
Q Consensus 294 ~~~l~V~nLp~~~te~~l~~~F~~~G~v~~-v~i~~~~------------~tg-~~~G~afV~f~~~~~A~~Al~~l~g~ 359 (435)
...|.|-+.|... ...|.+.|++||.|++ +.+..+. -.+ ....+..|.|.+..+|.+||. .||.
T Consensus 7 e~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 3578888997664 4567789999999865 2211100 000 124578999999999999999 6999
Q ss_pred eeCCeEEEEEEcc
Q 013837 360 KMGDKTLTVRRAT 372 (435)
Q Consensus 360 ~~~g~~l~V~~a~ 372 (435)
.|+|..|-|....
T Consensus 85 ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 85 VFNGVLLGVIPYT 97 (132)
T ss_dssp EETTEECEEEECC
T ss_pred EeCcEEEEEEECC
Confidence 9999999999883
No 394
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.30 E-value=0.0044 Score=45.47 Aligned_cols=64 Identities=16% Similarity=0.308 Sum_probs=47.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecC------CCcEEEEEecCHHHHHHHH-HhCCceec
Q 013837 175 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINH------EKKFAFVEMRTVEEASNAM-ALDGIIFE 247 (435)
Q Consensus 175 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~------~~g~afv~f~~~~~a~~a~-~l~~~~~~ 247 (435)
.+|.|++||+.+||+++.+.+..+..+ ......-|. .-.-|||.|.+.+++.... .++|+.|.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~----------d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEH----------DYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCE----------EEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccc----------eEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 479999999999999999888876421 011111222 1258999999999999998 59999886
Q ss_pred C
Q 013837 248 G 248 (435)
Q Consensus 248 g 248 (435)
+
T Consensus 72 D 72 (91)
T 1uw4_A 72 D 72 (91)
T ss_dssp C
T ss_pred c
Confidence 4
No 395
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.01 E-value=0.0042 Score=48.43 Aligned_cols=82 Identities=15% Similarity=0.237 Sum_probs=56.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceE------EEEec--CCCcEEEEEecCHHHHHHHHHhCCce
Q 013837 174 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVV------NVYIN--HEKKFAFVEMRTVEEASNAMALDGII 245 (435)
Q Consensus 174 ~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~------~~~~~--~~~g~afv~f~~~~~a~~a~~l~~~~ 245 (435)
...|.|-+.|...+ ..|.+.|++||.|+............ ..+.. .......|+|.+..+|.+||..||..
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~i 85 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAV 85 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCE
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeE
Confidence 45689999977665 56888999999987632111000000 00011 13568899999999999999999999
Q ss_pred ecCceEEEcCC
Q 013837 246 FEGVAVRVRRP 256 (435)
Q Consensus 246 ~~g~~l~v~~~ 256 (435)
|.|.-|-|.+.
T Consensus 86 i~G~mIGV~Py 96 (132)
T 3p3d_A 86 FNGVLLGVIPY 96 (132)
T ss_dssp ETTEECEEEEC
T ss_pred eCcEEEEEEEC
Confidence 99997788754
No 396
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=95.61 E-value=0.016 Score=42.56 Aligned_cols=52 Identities=17% Similarity=0.217 Sum_probs=41.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHH
Q 013837 174 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMA 240 (435)
Q Consensus 174 ~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~ 240 (435)
...++| ++|......||.++|..||.| .|.=+ +-..|||.|.+++.|..||.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv----------~I~Wi----dDTsAlvvf~~~~~a~~al~ 67 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNI----------QISWI----DDTSAFVSLSQPEQVQIAVN 67 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSC----------CCEEE----ETTEEEEECSCHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCE----------EEEEE----cCCeEEEEecCHHHHHHHHH
Confidence 345666 999999999999999999843 12222 24689999999999999995
No 397
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.48 E-value=0.0077 Score=58.19 Aligned_cols=55 Identities=13% Similarity=0.188 Sum_probs=41.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHH
Q 013837 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355 (435)
Q Consensus 295 ~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~ 355 (435)
+.|+|. .|..+++.+|.+.|++||+|..+.+.++. .-||.|||.+.+++..++..
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHSS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhc
Confidence 679997 68899999999999999999999887753 25999999999998877653
No 398
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=94.39 E-value=0.012 Score=56.82 Aligned_cols=61 Identities=18% Similarity=0.176 Sum_probs=42.0
Q ss_pred hcccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCC-cEEEEEecCHHHHHHHHHhCC
Q 013837 170 ATRHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEK-KFAFVEMRTVEEASNAMALDG 243 (435)
Q Consensus 170 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~-g~afv~f~~~~~a~~a~~l~~ 243 (435)
.+...++|+|. .|..+++.+|.++|++||.|. ++..-.++ -||.|||.+.+++..++...+
T Consensus 49 ~~qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~------------~~~~~~~~g~~~~vef~~~~~~~~~~~~~~ 110 (464)
T 3pq1_A 49 REQAQRTVLIH-CPEKISENKFLKYLSQFGPIN------------NHFFYESFGLYAVVEFCQKESIGSLQNGTH 110 (464)
T ss_dssp HHHHHTEEEEE-ECCC---CHHHHHHGGGSCCC------------CEEEECSSSEEEEEECC---CCHHHHSSCC
T ss_pred HHHhcceEEEE-cCCCCCHHHHHHHHHhcCCcc------------eEEEEccCCeEEEEEeCCHHHHHHHHhccC
Confidence 34567899998 799999999999999999853 33333344 599999999999998874433
No 399
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=94.33 E-value=0.022 Score=41.98 Aligned_cols=51 Identities=20% Similarity=0.231 Sum_probs=40.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHHH
Q 013837 175 RRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMA 240 (435)
Q Consensus 175 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~~ 240 (435)
..++| ++|......||.++|..||.| ....+ +-..|||.|.+++.|..||.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv------------~I~Wi--dDTsAlvvf~~~~~a~~al~ 57 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI------------QISWI--DDTSAFVSLSQPEQVKIAVN 57 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE------------EEEEE--ETTEEEEEEEEECHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE------------EEEEE--cCCeEEEEecCHHHHHHHHH
Confidence 34666 999999999999999999842 22222 24689999999999999995
No 400
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=93.96 E-value=0.03 Score=41.32 Aligned_cols=72 Identities=18% Similarity=0.218 Sum_probs=46.1
Q ss_pred cCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhCCceecC
Q 013837 173 HARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALDGIIFEG 248 (435)
Q Consensus 173 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~~~~~~g 248 (435)
.+-+|.|+.||+.+||+++.+.+..+-.+ .....-+++.-. -...-.-|||.|.+.++..... .++|..|.+
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~-d~~~fv~G~~s~---~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAH-DYFEFFAADLSL---YPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSE-EECCCCCCCSSS---CCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCcc-ceEEEeCCccCC---CCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 35589999999999999987776654111 000000000000 0011257999999999999999 599988854
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=88.35 E-value=1.1 Score=44.08 Aligned_cols=55 Identities=18% Similarity=0.390 Sum_probs=45.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhC
Q 013837 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALN 357 (435)
Q Consensus 294 ~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~ 357 (435)
...++|+ +|..+...+|.++|+.||.| .|..+-+ ..|||.|.+.+.|..++..++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHH
Confidence 4567776 88899999999999999965 4555544 269999999999999999874
No 402
>1jmt_B Splicing factor U2AF 65 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens}
Probab=82.34 E-value=0.46 Score=25.92 Aligned_cols=16 Identities=19% Similarity=0.397 Sum_probs=13.7
Q ss_pred CCccCCCCccCCCCCC
Q 013837 112 SGFDMAPPAAAMLPGA 127 (435)
Q Consensus 112 ~~~~~~p~~~~~~~~~ 127 (435)
..||++|+||+++++.
T Consensus 6 ~~WDvpP~GyE~vtp~ 21 (28)
T 1jmt_B 6 KYWDVPPPGFEHITPM 21 (28)
T ss_dssp CCBTCCCTTCTTSCHH
T ss_pred cccCCCCCCccccCHH
Confidence 3799999999998864
No 403
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=62.51 E-value=11 Score=37.02 Aligned_cols=54 Identities=19% Similarity=0.213 Sum_probs=41.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH-HhC
Q 013837 174 ARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM-ALD 242 (435)
Q Consensus 174 ~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~-~l~ 242 (435)
...++|+ +|..+...+|.++|+.||.+ .-..+ +...|||.|.+.+.|..++ .++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v------------~V~wi--ddt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI------------QISWI--DDTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC------------EEEEC--SSSEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE------------EEEEE--cCCeEEEEECCHHHHHHHHHHHH
Confidence 3466666 99999999999999999742 11222 4578999999999999999 453
No 404
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=59.12 E-value=14 Score=25.43 Aligned_cols=59 Identities=7% Similarity=0.088 Sum_probs=37.6
Q ss_pred CCCHHHHHHHHHhcCC-----eeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCceeCCeEEEEEEcc
Q 013837 305 YFTETQIKELLESFGT-----LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRAT 372 (435)
Q Consensus 305 ~~te~~l~~~F~~~G~-----v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~~~~g~~l~V~~a~ 372 (435)
.+...+|..++..-+. |=.|.|.. .|.||+-... .|..++..|++..+.|+.+.|..+.
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d--------~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMD--------NASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECS--------SCEEEEECTT-CHHHHHHHHTTCCC---CCCEEECC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeC--------CcEEEEECHH-HHHHHHHHhccccCcCceEEEEECC
Confidence 4566777777765544 33445533 2789988654 4677889999999999999998874
No 405
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=49.99 E-value=65 Score=22.76 Aligned_cols=55 Identities=13% Similarity=0.143 Sum_probs=43.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHh
Q 013837 294 PDRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAAL 356 (435)
Q Consensus 294 ~~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l 356 (435)
.+-|.|-|+|..+-..++.-.....|---.+..+ .|.|.|.|.+.++...||..|
T Consensus 12 nclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHH
T ss_pred CcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHH
Confidence 4567789999999998888777777765444443 256999999999999999876
No 406
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=46.53 E-value=36 Score=27.69 Aligned_cols=49 Identities=8% Similarity=0.131 Sum_probs=35.1
Q ss_pred eEEEcCCCC-C--------CCHHHHHHHH--HhcCCeeEEEEeecCCCCCcceEEEEEEcCHH
Q 013837 296 RVFVGGLPY-Y--------FTETQIKELL--ESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPA 347 (435)
Q Consensus 296 ~l~V~nLp~-~--------~te~~l~~~F--~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~ 347 (435)
.++|-|+|. . ...++|.+.| ..|.++. |..+.++. -+.|+|.|+|..--
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~--Gh~g~aIv~F~~dw 73 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYL--GHSGTAIVEFNKDW 73 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSS--BEEEEEEEECCSSH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCC--CCceeEEEEecCCh
Confidence 567778886 2 2347899977 8999875 55555542 37899999998743
No 407
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=34.17 E-value=85 Score=21.66 Aligned_cols=61 Identities=15% Similarity=0.197 Sum_probs=39.6
Q ss_pred cEEEEEecCHHHHHHHH----HhCCceecCceEEEcCCCCCCcchhhcCCCCCCCCCccccccccccCCCCCCCCCCeEE
Q 013837 223 KFAFVEMRTVEEASNAM----ALDGIIFEGVAVRVRRPTDYNPTLAAALGPGQPSPNLNLAAVGLASGAIGGAEGPDRVF 298 (435)
Q Consensus 223 g~afv~f~~~~~a~~a~----~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 298 (435)
-|.++.|....++.+-| .+|...+.-..|++.-+..| .++|
T Consensus 6 ~Yvl~~~~a~~~~i~Eler~~rine~VlR~l~vr~d~~r~Y-----------------------------------E~m~ 50 (77)
T 3zzp_A 6 YTTWYQVEMPEDRVNDLARELRIRDNVRRVMVVASTTPGRY-----------------------------------EVNI 50 (77)
T ss_dssp TEEEEEEECCHHHHHHHHHHHHTSTTEEEEEEEECSSTTEE-----------------------------------EEEE
T ss_pred EEEEEEEEeCHhHHHHHHHHhCCCHHHHHHHHHhccCCCce-----------------------------------EEEE
Confidence 48899998776666655 36777775444444433322 2566
Q ss_pred EcCCCCCCCHHHHHHHHHhcCC
Q 013837 299 VGGLPYYFTETQIKELLESFGT 320 (435)
Q Consensus 299 V~nLp~~~te~~l~~~F~~~G~ 320 (435)
| |.+.++++.+..+.++|-.
T Consensus 51 I--l~P~l~ee~~~~~vek~~~ 70 (77)
T 3zzp_A 51 V--LNPNLDQSQLQNEKEIIQR 70 (77)
T ss_dssp E--ECTTCCHHHHHHHHHHHHH
T ss_pred E--ECCCCCHHHHHHHHHHHHH
Confidence 6 4567889888888877643
No 408
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=29.54 E-value=1.2e+02 Score=19.80 Aligned_cols=54 Identities=15% Similarity=-0.024 Sum_probs=41.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHH
Q 013837 295 DRVFVGGLPYYFTETQIKELLESFGTLHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355 (435)
Q Consensus 295 ~~l~V~nLp~~~te~~l~~~F~~~G~v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~ 355 (435)
.++.|.+|.-.--...|...+.. ..|..+.+-.. .+.+.|.|.+.++...||+.
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN------EAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS------EEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc------CCEEEEEECCHHHHHHHHHH
Confidence 36889999877788999999999 88887777443 45688888855566677774
No 409
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=28.63 E-value=1.6e+02 Score=20.83 Aligned_cols=54 Identities=7% Similarity=0.039 Sum_probs=41.2
Q ss_pred ccCCeEEEcCCCCCCCHHHHHHHHHHHHHhhcCCCCCCCCceEEEEecCCCcEEEEEecCHHHHHHHH
Q 013837 172 RHARRVYVGGLPPLANEQAIATFFSQVMTAIGGNSAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAM 239 (435)
Q Consensus 172 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~~~~~~~~v~~~~~~~~~g~afv~f~~~~~a~~a~ 239 (435)
+..|-|.|-|+|..+-..++.-.....|- -..+.. -.|.|.|.|.+.++...|+
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgy------------efycdy--idgqamirfqnsdeqrlai 63 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGY------------EFYCDY--IDGQAMIRFQNSDEQRLAI 63 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCC------------CEEEEE--CSSCEEEEESSHHHHHHHH
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCe------------eEeeee--ecCeeEEEecCChHHHHHH
Confidence 45688999999999988888777666653 122222 3588999999999999999
No 410
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=24.39 E-value=2.1e+02 Score=20.89 Aligned_cols=47 Identities=17% Similarity=0.251 Sum_probs=27.0
Q ss_pred CCCCHHHHHHHHHh-cCC---eeEE-EEeecCCCCCcceEEEEEEcCHHHHHH
Q 013837 304 YYFTETQIKELLES-FGT---LHGF-DLVKDRDTGNSKGYGFCVYQDPAVTDI 351 (435)
Q Consensus 304 ~~~te~~l~~~F~~-~G~---v~~v-~i~~~~~tg~~~G~afV~f~~~~~A~~ 351 (435)
..++..+|++.+.+ |+. +.-| .+...-..|.+.|||.| |.+.+.|.+
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk 79 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQ 79 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 45677888776664 443 2222 22222234667788776 777766654
No 411
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=22.12 E-value=2.1e+02 Score=22.59 Aligned_cols=56 Identities=13% Similarity=0.107 Sum_probs=38.3
Q ss_pred EEEcCCCCCCCHHHHHHHHHh-cCC-eeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHH
Q 013837 297 VFVGGLPYYFTETQIKELLES-FGT-LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355 (435)
Q Consensus 297 l~V~nLp~~~te~~l~~~F~~-~G~-v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~ 355 (435)
.|+--.+...+..+|++.++. ||. |..|..+.-+. | .--|||.+....+|......
T Consensus 89 ~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~-g--~KKAyV~La~~~dAldvAnk 146 (150)
T 4a17_R 89 TMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTIT-G--NKKAYIRLAADSDSLTLANK 146 (150)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTT-S--CEEEEEEECSSSCHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCC-C--cEEEEEEcCCCCcHHHHHHh
Confidence 344445778899999998886 564 67776666542 2 23599999887777665443
No 412
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=22.00 E-value=2.4e+02 Score=20.79 Aligned_cols=47 Identities=17% Similarity=0.062 Sum_probs=27.0
Q ss_pred CCCCHHHHHHHHH-hcCC---eeEEE-EeecCCCCCcceEEEEEEcCHHHHHH
Q 013837 304 YYFTETQIKELLE-SFGT---LHGFD-LVKDRDTGNSKGYGFCVYQDPAVTDI 351 (435)
Q Consensus 304 ~~~te~~l~~~F~-~~G~---v~~v~-i~~~~~tg~~~G~afV~f~~~~~A~~ 351 (435)
..++..+|++.+. .|+. +.-|. +...-..|.+.|||.| |.+.+.|.+
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 88 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLY 88 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 3456777776555 3554 22222 2222234667888877 888877764
No 413
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=21.41 E-value=2.1e+02 Score=22.34 Aligned_cols=56 Identities=9% Similarity=0.065 Sum_probs=38.3
Q ss_pred EEEcCCCCCCCHHHHHHHHHh-cCC-eeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHH
Q 013837 297 VFVGGLPYYFTETQIKELLES-FGT-LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAA 355 (435)
Q Consensus 297 l~V~nLp~~~te~~l~~~F~~-~G~-v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~ 355 (435)
.|+--.....+..+|++.++. ||. |..|..+.-+. | .--|||.+....+|......
T Consensus 81 ~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~-g--~KKAyV~L~~~~daldvAnk 138 (142)
T 3u5e_X 81 ILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPN-G--TKKAYVRLTADYDALDIANR 138 (142)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTT-S--CEEEEEEECTTCCHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCC-C--ceEEEEEeCCCCcHHHHHHh
Confidence 344456778899999998886 564 77777666542 2 23599999888777665443
No 414
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=20.93 E-value=57 Score=23.38 Aligned_cols=25 Identities=12% Similarity=0.126 Sum_probs=21.6
Q ss_pred cceEEEEEEcCHHHHHHHHHHhCCc
Q 013837 335 SKGYGFCVYQDPAVTDIACAALNGL 359 (435)
Q Consensus 335 ~~G~afV~f~~~~~A~~Al~~l~g~ 359 (435)
-.||.||++...++...++..+.|.
T Consensus 49 fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 49 LKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp STTEEEEEESSHHHHHHHHTTCTTE
T ss_pred cCCEEEEEEecchhHHHHHHCCCCc
Confidence 5799999999999999999877664
No 415
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=20.32 E-value=82 Score=23.29 Aligned_cols=34 Identities=15% Similarity=0.168 Sum_probs=25.2
Q ss_pred eeEEEEeecCCCCCcceEEEEEEcCHHHHHHHHHHhCCc
Q 013837 321 LHGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGL 359 (435)
Q Consensus 321 v~~v~i~~~~~tg~~~G~afV~f~~~~~A~~Al~~l~g~ 359 (435)
|.++..+.. .+||.|||=....+...|++.+.+.
T Consensus 41 I~Si~~~~~-----lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 41 IKSVVAPEH-----VKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp CCEEEECTT-----CCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred eEEEEecCC-----CceEEEEEeCCHHHHHHHHhcccce
Confidence 555544322 5899999999999999998876443
No 416
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=20.18 E-value=2.5e+02 Score=22.06 Aligned_cols=47 Identities=15% Similarity=0.183 Sum_probs=27.3
Q ss_pred CCCCHHHHHHHHHh-cCCeeE-EEEe---ecCCCCCcceEEEEEEcCHHHHHH
Q 013837 304 YYFTETQIKELLES-FGTLHG-FDLV---KDRDTGNSKGYGFCVYQDPAVTDI 351 (435)
Q Consensus 304 ~~~te~~l~~~F~~-~G~v~~-v~i~---~~~~tg~~~G~afV~f~~~~~A~~ 351 (435)
..++..+|++.+.. |+.=.+ |.|. ..-..|.+.|||.| |.+.+.|.+
T Consensus 31 aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk 82 (149)
T 2xzm_P 31 PTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLK 82 (149)
T ss_dssp CSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHh
Confidence 35677788776664 554111 2222 12223667788887 788777764
Done!