BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013838
(435 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VNY|A Chain A, Crystal Structure Of Beta-Glucuronidase From
Acidobacterium Capsulatum
pdb|3VNZ|A Chain A, Crystal Structure Of Beta-Glucuronidase From
Acidobacterium Capsulatum In Complex With D-Glucuronic
Acid
pdb|3VO0|A Chain A, Crystal Structure Of Beta-Glucuronidase From
Acidobacterium Capsulatum Covalent-Bonded With
2-Deoxy-2-Fluoro-D-Glucuronic Acid
Length = 488
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 81/337 (24%), Positives = 133/337 (39%), Gaps = 48/337 (14%)
Query: 90 IRIGGSLQDQVLYD--VGDLKAPCHPFRKMKDGLFGFSKGCLHMQRWDELNQLFNRTRAI 147
+RIGG+ + ++ A H G ++ + + + L++ ++T
Sbjct: 75 LRIGGNTSEYTFWNRHAKPTAADEHLAAGPDKGHHAAAREVITPEAVNNLSEFLDKTGWK 134
Query: 148 VSFGLNALHGRHNIRHNAWGGAWDSNNARDFLKYTISM--GYQIDSWEYGNE--LSGRTS 203
+ +GLN G NA D Y + ++ +++ GNE L R
Sbjct: 135 LIYGLNL-------------GKGTPENAADEAAYVMETIGADRLLAFQLGNEPDLFYRNG 181
Query: 204 I-GASVDAELYGKDLINLKNIINELYKNSSSKPTILAPGGFFDQEWYAKFLQVSGSNVVN 262
I AS D Y D I + N+ P ++ +W F +V
Sbjct: 182 IRPASYDFAAYAGDWQRFFTAIRKRVPNAP----FAGPDTAYNTKWLVPFADKFKHDV-K 236
Query: 263 GVTHHIYNLGPGVDPNL-VSKILNPQ-RLSRVSETFGNLKQTIEKHG-PWASAWVGESGG 319
++ H Y GP DP++ + +++ P RL + ET G LKQ G P+ + E+
Sbjct: 237 FISSHYYAEGPPTDPSMTIERLMKPNPRL--LGETAG-LKQVEADTGLPFR---LTETNS 290
Query: 320 AYNSGGRHVSNTFVNSFWYLDQLGMSSKYNTKVYCRQTLVGGNYGLLNATT------FIP 373
Y G + VS+TF + W D + + + GG YG FI
Sbjct: 291 CYQGGKQGVSDTFAAALWAGDLMYQQAAAGS---TGINFHGGGYGWYTPVAGTPEDGFIA 347
Query: 374 NPDYYSALLWHRLMGKGVLSVA--TDGSSS--LRSYA 406
P+YY LL+ + G G L A TD S++ L +YA
Sbjct: 348 RPEYYGMLLFAQ-AGAGQLLGAKLTDNSAAPLLTAYA 383
>pdb|2NZ5|A Chain A, Structure And Function Studies Of Cytochrome P450 158a1
From Streptomyces Coelicolor A3(2)
pdb|2NZ5|B Chain B, Structure And Function Studies Of Cytochrome P450 158a1
From Streptomyces Coelicolor A3(2)
pdb|2NZA|A Chain A, Structure And Function Studies Of Cytochrome P450 158a1
From Streptomyces Coelicolor A3(2)
pdb|2NZA|B Chain B, Structure And Function Studies Of Cytochrome P450 158a1
From Streptomyces Coelicolor A3(2)
Length = 413
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 251 KFLQVSGSNVVNGVTHHIYNLGPGVDPNLVSKILNPQRLSRVSETFGNLKQTIEKHGPWA 310
K L+ +++G+ I GP D LV ++L P ++ VSE G E+ W
Sbjct: 121 KRLRPRAQEILDGLVDGILAEGPPAD--LVERVLEPFPIAVVSEVMGVPAADRERVHSWT 178
Query: 311 SAWVGESGGA 320
+ SGGA
Sbjct: 179 RQIISTSGGA 188
>pdb|2DKK|A Chain A, Structure/function Studies Of Cytochrome P450 158a1 From
Streptomyces Coelicolor A3(2)
Length = 411
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 251 KFLQVSGSNVVNGVTHHIYNLGPGVDPNLVSKILNPQRLSRVSETFGNLKQTIEKHGPWA 310
K L+ +++G+ I GP D LV ++L P ++ VSE G E+ W
Sbjct: 121 KRLRPRAQEILDGLVDGILAEGPPAD--LVERVLEPFPIAVVSEVMGVPAADRERVHSWT 178
Query: 311 SAWVGESGGA 320
+ SGGA
Sbjct: 179 RQIISTSGGA 188
>pdb|3QYC|A Chain A, Structure Of A Dimeric Anti-Her2 Single Domain Antibody
pdb|3QYC|B Chain B, Structure Of A Dimeric Anti-Her2 Single Domain Antibody
Length = 146
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 19 LARDVTRVTIFVDATKTVATNDEHFICATV-DWWPHDKCNYNHCPWGNSSVINL 71
++RD ++ T+++ A + + C T+ D P D C Y WG +++ +
Sbjct: 72 ISRDNSKNTVYLQMNSLRAEDTAVYYCVTLPDLCPGDNCTYPDASWGQGTMVTV 125
>pdb|3ETD|A Chain A, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|B Chain B, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|C Chain C, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|D Chain D, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|E Chain E, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|F Chain F, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETE|A Chain A, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|B Chain B, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|C Chain C, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|D Chain D, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|E Chain E, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|F Chain F, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETG|A Chain A, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|B Chain B, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|C Chain C, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|D Chain D, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|E Chain E, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|F Chain F, Glutamate Dehydrogenase Complexed With Gw5074
Length = 501
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 53/136 (38%), Gaps = 21/136 (15%)
Query: 271 LGPGVDPNLVSKILNPQRLSRVSETFGNL--KQTIEKHGPWASAWVGESG--GAYNSGGR 326
+GPGVD + +S +++T+ + I H + + G G ++ GR
Sbjct: 158 IGPGVDVPAPDMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGR 217
Query: 327 ---HVSNTFVNSFWYLDQLGMSSKYNTKVYCRQTLVGGNYGLLNATTFIPNPDYYSALLW 383
H F+N Y+ LGM+ + K + Q GN GL +S
Sbjct: 218 GVFHGIENFINEASYMSILGMTPGFGDKTFAVQGF--GNVGL------------HSMRYL 263
Query: 384 HRLMGKGVLSVATDGS 399
HR K V +DGS
Sbjct: 264 HRFGAKCVAVGESDGS 279
>pdb|3MW9|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|B Chain B, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|C Chain C, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|D Chain D, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|E Chain E, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|F Chain F, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MVO|A Chain A, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|B Chain B, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|C Chain C, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|D Chain D, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|E Chain E, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|F Chain F, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVQ|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|B Chain B, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|C Chain C, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|D Chain D, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|E Chain E, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|F Chain F, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3QMU|A Chain A, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|B Chain B, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|C Chain C, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|D Chain D, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|E Chain E, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|F Chain F, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|G Chain G, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|H Chain H, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|I Chain I, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|J Chain J, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|K Chain K, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|L Chain L, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
Length = 501
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 53/136 (38%), Gaps = 21/136 (15%)
Query: 271 LGPGVDPNLVSKILNPQRLSRVSETFGNL--KQTIEKHGPWASAWVGESG--GAYNSGGR 326
+GPGVD + +S +++T+ + I H + + G G ++ GR
Sbjct: 158 IGPGVDVPAPDMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGR 217
Query: 327 ---HVSNTFVNSFWYLDQLGMSSKYNTKVYCRQTLVGGNYGLLNATTFIPNPDYYSALLW 383
H F+N Y+ LGM+ + K + Q GN GL +S
Sbjct: 218 GVFHGIENFINEASYMSILGMTPGFGDKTFVVQGF--GNVGL------------HSMRYL 263
Query: 384 HRLMGKGVLSVATDGS 399
HR K + +DGS
Sbjct: 264 HRFGAKCITVGESDGS 279
>pdb|1NR1|A Chain A, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|B Chain B, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|C Chain C, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|D Chain D, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|E Chain E, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|F Chain F, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
Length = 496
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 53/136 (38%), Gaps = 21/136 (15%)
Query: 271 LGPGVDPNLVSKILNPQRLSRVSETFGNL--KQTIEKHGPWASAWVGESG--GAYNSGGR 326
+GPG+D + +S +++T+ + I H + + G G ++ GR
Sbjct: 153 IGPGIDVPAPDMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGR 212
Query: 327 ---HVSNTFVNSFWYLDQLGMSSKYNTKVYCRQTLVGGNYGLLNATTFIPNPDYYSALLW 383
H F+N Y+ LGM+ + K + Q GN GL +S
Sbjct: 213 GVFHGIENFINEASYMSILGMTPGFGDKTFVVQGF--GNVGL------------HSMRYL 258
Query: 384 HRLMGKGVLSVATDGS 399
HR K + +DGS
Sbjct: 259 HRFGAKCIAVGESDGS 274
>pdb|1NQT|A Chain A, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|B Chain B, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|C Chain C, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|D Chain D, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|E Chain E, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|F Chain F, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|G Chain G, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|H Chain H, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|I Chain I, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|J Chain J, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|K Chain K, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|L Chain L, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NR7|A Chain A, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|B Chain B, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|C Chain C, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|D Chain D, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|E Chain E, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|F Chain F, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|G Chain G, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|H Chain H, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|I Chain I, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|J Chain J, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|K Chain K, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|L Chain L, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
Length = 496
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 53/136 (38%), Gaps = 21/136 (15%)
Query: 271 LGPGVDPNLVSKILNPQRLSRVSETFGNL--KQTIEKHGPWASAWVGESG--GAYNSGGR 326
+GPG+D + +S +++T+ + I H + + G G ++ GR
Sbjct: 153 IGPGIDVPAPDMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGR 212
Query: 327 ---HVSNTFVNSFWYLDQLGMSSKYNTKVYCRQTLVGGNYGLLNATTFIPNPDYYSALLW 383
H F+N Y+ LGM+ + K + Q GN GL +S
Sbjct: 213 GVFHGIENFINEASYMSILGMTPGFGDKTFVVQGF--GNVGL------------HSMRYL 258
Query: 384 HRLMGKGVLSVATDGS 399
HR K + +DGS
Sbjct: 259 HRFGAKCIAVGESDGS 274
>pdb|1L1F|A Chain A, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|B Chain B, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|C Chain C, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|D Chain D, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|E Chain E, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|F Chain F, Structure Of Human Glutamate Dehydrogenase-Apo Form
Length = 505
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 53/136 (38%), Gaps = 21/136 (15%)
Query: 271 LGPGVDPNLVSKILNPQRLSRVSETFGNL--KQTIEKHGPWASAWVGESG--GAYNSGGR 326
+GPG+D + +S +++T+ + I H + + G G ++ GR
Sbjct: 162 IGPGIDVPAPDMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGR 221
Query: 327 ---HVSNTFVNSFWYLDQLGMSSKYNTKVYCRQTLVGGNYGLLNATTFIPNPDYYSALLW 383
H F+N Y+ LGM+ + K + Q GN GL +S
Sbjct: 222 GVFHGIENFINEASYMSILGMTPGFGDKTFVVQGF--GNVGL------------HSMRYL 267
Query: 384 HRLMGKGVLSVATDGS 399
HR K + +DGS
Sbjct: 268 HRFGAKCIAVGESDGS 283
>pdb|1KWH|A Chain A, Structure Analysis Algq2, A
Macromolecule(Alginate)-Binding Periplasmic Protein Of
Sphingomonas Sp. A1.
pdb|1J1N|A Chain A, Structure Analysis Of Algq2, A
Macromolecule(alginate)-binding Periplasmic Protein Of
Sphingomonas Sp. A1., Complexed With An Alginate
Tetrasaccharide
pdb|1J1N|B Chain B, Structure Analysis Of Algq2, A
Macromolecule(alginate)-binding Periplasmic Protein Of
Sphingomonas Sp. A1., Complexed With An Alginate
Tetrasaccharide
Length = 492
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 44/111 (39%), Gaps = 15/111 (13%)
Query: 305 KHGPWASAWVGESGGAYNSGGRHVSNTFVNSFWYLDQLGMSSKYNTKVYCRQTLVGGNYG 364
KH PWA A+ G +HV+ WY + L + K R+ + GGN G
Sbjct: 219 KH-PWAET-------AFRDGMKHVAQ------WYKEGLIDKEIFTRKAKAREQMFGGNLG 264
Query: 365 LLNATTFIPNPDYYSALLWHRLMGKGVLSVATDGSSSLRSYAHCSKERLTP 415
F + L + G ++ +A +S + + S++++ P
Sbjct: 265 GFTHDWFASTMTFNEGLA-KTVPGFKLIPIAPPTNSKGQRWEEDSRQKVRP 314
>pdb|2WJ5|A Chain A, Rat Alpha Crystallin Domain
Length = 101
Score = 28.9 bits (63), Expect = 5.9, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 266 HHIYNLGPGVDPNLVSKILNPQRLSRVSET 295
H Y L PGVDP V+ L+P+ + + T
Sbjct: 57 HRRYRLPPGVDPAAVTSALSPEGVLSIQAT 86
>pdb|2ZYS|A Chain A, A. Fulgidus Lipase With Fatty Acid Fragment And Chloride
Length = 479
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 270 NLGPGVDPNLVSKILNPQRLSRVSETFGNLKQTIEKHGPWASA----WVGESGGAY 321
N+ +DP + KIL+ R + ETF L + I++ + A VG S G +
Sbjct: 85 NISQIIDPETLDKILSKSRERLIDETFSRLDRVIDEALAESGADKVDLVGHSMGTF 140
>pdb|2ZYR|A Chain A, A. Fulgidus Lipase With Fatty Acid Fragment And Magnesium
pdb|2ZYR|B Chain B, A. Fulgidus Lipase With Fatty Acid Fragment And Magnesium
Length = 484
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 270 NLGPGVDPNLVSKILNPQRLSRVSETFGNLKQTIEK 305
N+ +DP + KIL+ R + ETF L + I++
Sbjct: 85 NISQIIDPETLDKILSKSRERLIDETFSRLDRVIDE 120
>pdb|2ZYH|A Chain A, Mutant A. Fulgidus Lipase S136a Complexed With Fatty Acid
Fragment
pdb|2ZYH|B Chain B, Mutant A. Fulgidus Lipase S136a Complexed With Fatty Acid
Fragment
Length = 475
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 270 NLGPGVDPNLVSKILNPQRLSRVSETFGNLKQTIEK 305
N+ +DP + KIL+ R + ETF L + I++
Sbjct: 85 NISQIIDPETLDKILSKSRERLIDETFSRLDRVIDE 120
>pdb|2ZYI|A Chain A, A. Fulgidus Lipase With Fatty Acid Fragment And Calcium
pdb|2ZYI|B Chain B, A. Fulgidus Lipase With Fatty Acid Fragment And Calcium
Length = 475
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 270 NLGPGVDPNLVSKILNPQRLSRVSETFGNLKQTIEK 305
N+ +DP + KIL+ R + ETF L + I++
Sbjct: 85 NISQIIDPETLDKILSKSRERLIDETFSRLDRVIDE 120
>pdb|1WYN|A Chain A, Solution Structure Of The Ch Domain Of Human Calponin-2
Length = 146
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 131 MQRWDELNQLFNRTRAIVSFGLNAL 155
MQ W +L L N +A+VS+G+N +
Sbjct: 67 MQNWHQLENLSNFIKAMVSYGMNPV 91
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,043,977
Number of Sequences: 62578
Number of extensions: 610277
Number of successful extensions: 1718
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1704
Number of HSP's gapped (non-prelim): 24
length of query: 435
length of database: 14,973,337
effective HSP length: 102
effective length of query: 333
effective length of database: 8,590,381
effective search space: 2860596873
effective search space used: 2860596873
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)