Query 013838
Match_columns 435
No_of_seqs 138 out of 487
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 07:54:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013838.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013838hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03662 Glyco_hydro_79n: Glyc 100.0 2.5E-73 5.5E-78 549.5 -1.3 318 25-343 2-319 (319)
2 COG3534 AbfA Alpha-L-arabinofu 100.0 7.7E-31 1.7E-35 256.9 22.6 376 26-433 4-440 (501)
3 PF01229 Glyco_hydro_39: Glyco 99.3 9.7E-11 2.1E-15 122.6 17.8 289 75-392 42-367 (486)
4 PF11790 Glyco_hydro_cc: Glyco 98.9 2.8E-08 6.1E-13 94.5 12.6 106 186-320 63-176 (239)
5 PF00150 Cellulase: Cellulase 98.5 3.2E-06 6.9E-11 81.7 14.1 218 74-324 22-251 (281)
6 PF02055 Glyco_hydro_30: O-Gly 98.3 2.4E-05 5.3E-10 81.7 17.3 235 175-433 207-473 (496)
7 PF12891 Glyco_hydro_44: Glyco 98.3 2.2E-06 4.8E-11 80.0 7.7 95 173-271 104-237 (239)
8 PF07745 Glyco_hydro_53: Glyco 98.1 0.00017 3.6E-09 71.5 18.1 206 72-321 23-241 (332)
9 PF12876 Cellulase-like: Sugar 97.7 6E-05 1.3E-09 60.1 5.3 74 187-269 9-88 (88)
10 COG5520 O-Glycosyl hydrolase [ 97.6 0.0011 2.4E-08 64.7 12.3 209 177-420 157-371 (433)
11 COG3867 Arabinogalactan endo-1 97.1 0.095 2.1E-06 50.4 19.3 214 71-321 61-287 (403)
12 smart00633 Glyco_10 Glycosyl h 97.0 0.21 4.7E-06 47.8 21.8 66 128-201 12-86 (254)
13 PF14587 Glyco_hydr_30_2: O-Gl 96.5 0.052 1.1E-06 54.5 13.0 167 137-321 109-312 (384)
14 COG3664 XynB Beta-xylosidase [ 96.4 0.028 6.1E-07 56.3 10.5 180 189-392 105-299 (428)
15 PRK10150 beta-D-glucuronidase; 96.4 0.11 2.3E-06 56.4 16.0 67 188-271 408-474 (604)
16 smart00813 Alpha-L-AF_C Alpha- 94.9 0.22 4.8E-06 45.4 10.0 64 371-434 64-139 (189)
17 PF06964 Alpha-L-AF_C: Alpha-L 93.9 0.2 4.3E-06 45.2 7.2 98 329-433 17-126 (177)
18 PF00332 Glyco_hydro_17: Glyco 93.7 0.93 2E-05 44.8 11.9 193 74-324 14-242 (310)
19 PF02836 Glyco_hydro_2_C: Glyc 91.6 1.8 4E-05 42.3 11.0 82 135-230 62-151 (298)
20 COG5309 Exo-beta-1,3-glucanase 91.2 4.9 0.00011 38.5 12.5 76 137-227 92-168 (305)
21 PF03198 Glyco_hydro_72: Gluca 85.2 29 0.00064 34.2 14.0 128 135-271 82-216 (314)
22 TIGR03356 BGL beta-galactosida 76.9 6.3 0.00014 40.8 6.7 100 77-201 58-165 (427)
23 PF02449 Glyco_hydro_42: Beta- 70.0 33 0.00073 34.6 9.9 56 78-155 15-70 (374)
24 PF02449 Glyco_hydro_42: Beta- 67.5 25 0.00055 35.5 8.5 107 260-383 251-367 (374)
25 PF14488 DUF4434: Domain of un 67.1 66 0.0014 28.6 10.0 91 132-240 65-161 (166)
26 PF02057 Glyco_hydro_59: Glyco 60.7 53 0.0011 35.8 9.4 154 183-388 168-336 (669)
27 COG2247 LytB Putative cell wal 59.1 13 0.00028 36.6 4.2 101 73-190 87-189 (337)
28 PRK09852 cryptic 6-phospho-bet 56.8 24 0.00052 37.1 6.1 103 79-201 77-184 (474)
29 PRK15014 6-phospho-beta-glucos 55.7 28 0.00061 36.6 6.4 99 79-200 75-181 (477)
30 COG3250 LacZ Beta-galactosidas 54.7 43 0.00094 37.6 7.9 60 135-200 347-409 (808)
31 KOG4701 Chitinase [Cell wall/m 53.3 2.6E+02 0.0057 28.4 13.4 42 133-182 91-132 (568)
32 PLN02849 beta-glucosidase 52.6 27 0.00057 37.1 5.7 68 132-201 119-191 (503)
33 PRK13511 6-phospho-beta-galact 50.3 31 0.00067 36.2 5.7 66 132-201 94-164 (469)
34 PRK09525 lacZ beta-D-galactosi 49.7 1.1E+02 0.0024 35.6 10.4 79 135-230 397-482 (1027)
35 PRK10340 ebgA cryptic beta-D-g 49.6 75 0.0016 36.9 9.1 81 135-230 381-469 (1021)
36 PRK09589 celA 6-phospho-beta-g 49.3 34 0.00074 36.0 5.9 68 132-201 108-180 (476)
37 PLN02814 beta-glucosidase 47.7 35 0.00077 36.1 5.7 68 132-201 117-189 (504)
38 PLN02998 beta-glucosidase 44.5 39 0.00084 35.8 5.4 68 132-201 122-194 (497)
39 TIGR01233 lacG 6-phospho-beta- 43.6 48 0.001 34.8 5.8 97 79-201 59-163 (467)
40 PRK09593 arb 6-phospho-beta-gl 42.9 57 0.0012 34.3 6.3 68 132-201 114-186 (478)
41 KOG2566 Beta-glucocerebrosidas 42.7 3.9E+02 0.0085 27.4 14.4 45 372-416 433-479 (518)
42 PF00232 Glyco_hydro_1: Glycos 41.5 30 0.00066 36.1 4.0 66 133-201 100-170 (455)
43 PF01870 Hjc: Archaeal hollida 37.9 80 0.0017 25.0 5.0 71 76-154 4-76 (88)
44 COG2723 BglB Beta-glucosidase/ 35.4 96 0.0021 32.4 6.4 106 76-201 62-172 (460)
45 TIGR01732 tiny_TM_bacill conse 33.7 25 0.00054 21.1 1.1 12 3-14 10-21 (26)
46 PF10960 DUF2762: Protein of u 28.9 35 0.00076 25.9 1.5 14 2-15 13-26 (71)
47 PF10566 Glyco_hydro_97: Glyco 28.2 1.3E+02 0.0028 29.2 5.6 128 128-268 28-157 (273)
48 PF00331 Glyco_hydro_10: Glyco 26.8 6.2E+02 0.013 24.9 19.2 221 128-381 55-317 (320)
49 COG1591 Holliday junction reso 24.7 1.8E+02 0.0039 25.0 5.2 73 75-155 10-89 (137)
50 COG2730 BglC Endoglucanase [Ca 24.4 5E+02 0.011 26.6 9.6 133 76-227 76-218 (407)
51 PRK10984 DNA-binding transcrip 24.3 79 0.0017 26.8 2.9 31 72-103 6-36 (127)
52 PF06692 MNSV_P7B: Melon necro 24.2 1.7E+02 0.0037 21.0 4.1 44 2-49 15-58 (61)
53 cd06543 GH18_PF-ChiA-like PF-C 24.0 68 0.0015 31.5 2.9 46 142-197 219-265 (294)
54 KOG0564 5,10-methylenetetrahyd 22.8 3.2E+02 0.007 28.8 7.4 48 130-184 90-142 (590)
55 PF01522 Polysacc_deac_1: Poly 22.8 3.5E+02 0.0077 21.6 6.8 78 131-229 17-94 (123)
56 COG0381 WecB UDP-N-acetylgluco 22.8 6.5E+02 0.014 25.7 9.6 98 216-338 15-112 (383)
57 COG4124 ManB Beta-mannanase [C 22.4 4.6E+02 0.0099 26.4 8.2 114 191-321 183-299 (355)
58 PF07417 Crl: Transcriptional 21.8 69 0.0015 27.1 2.1 30 73-103 5-34 (125)
59 PLN02803 beta-amylase 20.9 2.5E+02 0.0054 29.9 6.4 95 129-230 141-245 (548)
No 1
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=100.00 E-value=2.5e-73 Score=549.54 Aligned_cols=318 Identities=55% Similarity=1.066 Sum_probs=153.2
Q ss_pred eEEEEecCCCcccccCCceeEEEecccCCCCCCCCCCCCCCcccccCCCCcHHHHHHHHHcCCceEecCCcccceeeeec
Q 013838 25 RVTIFVDATKTVATNDEHFICATVDWWPHDKCNYNHCPWGNSSVINLDLSHPLLANAIQAFQSLRIRIGGSLQDQVLYDV 104 (435)
Q Consensus 25 ~~~v~v~~~~~~~~i~~~f~g~sie~~~~~~~~~~~~~w~~~~~~~~~~~~~~l~~l~~~l~p~~LRiGG~~~D~~~~~~ 104 (435)
.++|.|+.+.+++++|++|++.++||||+++|+|++++||+++++|+|++++.|++++|+|+|.+||+||+.+|+++|+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~f~catldwwp~~kc~y~~~~w~~as~~nlDL~n~~L~~a~~al~P~~iRvGGslqD~v~Y~~ 81 (319)
T PF03662_consen 2 DGTVVVDGSTAIATTDENFVCATLDWWPPSKCDYGQCSWGNASILNLDLSNPILINAAKALSPLYIRVGGSLQDQVIYDT 81 (319)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcCCCCCCCCccccccchhhHHHHHHHHhhcCCEEEEEeecCCCCcccCCCCCCCCCChHHHHHHHHHHHh
Q 013838 105 GDLKAPCHPFRKMKDGLFGFSKGCLHMQRWDELNQLFNRTRAIVSFGLNALHGRHNIRHNAWGGAWDSNNARDFLKYTIS 184 (435)
Q Consensus 105 ~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~d~f~~f~~~~g~~~i~~lN~~~~~~~~~~~~~~~~w~~~~A~~~l~y~~~ 184 (435)
+....+|.|+.++++..||++++|+++++||++++||+++|+++|||||++.++...+++++.+.|+++||+++++|+.+
T Consensus 82 ~~~~~~c~~~~~~~~~~~~fs~~clt~~rwd~l~~F~~~tG~~liFgLNAL~g~~~~~~~~~~g~WnssNA~~Ll~Yt~s 161 (319)
T PF03662_consen 82 GDNKQPCSPFVKNASGLFGFSNGCLTMSRWDELNNFAQKTGLKLIFGLNALLGRRQLADRDWDGSWNSSNAQSLLKYTAS 161 (319)
T ss_dssp ------------------------------HHHHHHHHHHT-EEEEEE-TTTS-HHHHHHHHHHHHHHH-TTTEEEEEES
T ss_pred cccccccccccccccccccccccccchhHHHHHHHHHHHhCCEEEEEecccCCCCCCCCCCcCCCCChHHHHHHHHHHHH
Confidence 98778999888888889999999999999999999999999999999999988643333345689999999999999999
Q ss_pred cCCccceeeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCeEECCCCCCCHHHHHHHHhhhCCCccceE
Q 013838 185 MGYQIDSWEYGNELSGRTSIGASVDAELYGKDLINLKNIINELYKNSSSKPTILAPGGFFDQEWYAKFLQVSGSNVVNGV 264 (435)
Q Consensus 185 ~g~~v~~wElGNEpd~~~~~~~~~t~~~Ya~d~~~~~~~i~~~~p~~~~~~~~~gp~~~~~~~~~~~fl~~~~~~~id~v 264 (435)
++|+|++|||||||+.. +.+..++++||++|+.+++++|+++|++...+|+++||++..+.+|+++||++.+++.||+|
T Consensus 162 kgy~I~~WELGNEl~g~-g~~~~v~a~qyakD~~~Lr~il~~iy~~~~~~P~v~gP~~~~d~~w~~~FL~~~g~~~vD~v 240 (319)
T PF03662_consen 162 KGYNIDSWELGNELNGS-GVGASVSAEQYAKDFIQLRKILNEIYKNALPGPLVVGPGGFFDADWLKEFLKASGPGVVDAV 240 (319)
T ss_dssp S-GGG--------HHHH-SSSTT--HHHHHHHH---HHHHHHHHHH-TT---EEEEEESS-GGGHHHHHHHTTTT--SEE
T ss_pred cCCCccccccccccCCC-CCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCCeEECCCCCCCHHHHHHHHHhcCCCccCEE
Confidence 99999999999999985 77889999999999999999999999887789999999998889999999999887569999
Q ss_pred EEeeeCCCCCCChhhhhhccChhhhhhHHHHHHHHHHHHHHhCCCCceEEcccccCcCCCCCCcchHHHHHHHHHHHhh
Q 013838 265 THHIYNLGPGVDPNLVSKILNPQRLSRVSETFGNLKQTIEKHGPWASAWVGESGGAYNSGGRHVSNTFVNSFWYLDQLG 343 (435)
Q Consensus 265 s~H~Y~~~~g~~~~~~~~ll~~~~l~~~~~~~~~~~~~~~~~~~~~p~wl~Etns~~~~G~~~vsdtf~aaLw~lD~l~ 343 (435)
|||+|+.++|.|+.+.+++++|.+|+++..+++.+++++++++|++++|||||+++|++|+++|||||+++|||||+||
T Consensus 241 T~H~Y~lg~g~d~~l~~~~l~p~~Ld~~~~~~~~~~~~v~~~~p~~~~WlGEtg~Ay~gG~~~vSdtFv~~FwwLDqLG 319 (319)
T PF03662_consen 241 TWHHYNLGSGRDPALIEDFLNPSYLDTLADTFQKLQQVVQEYGPGKPVWLGETGSAYNGGAPGVSDTFVAGFWWLDQLG 319 (319)
T ss_dssp EEEEEEE--TT-TT-HHHHTS--HHHHHHHHHHHHH-----HHH---EEEEEEEEESTT--TTTTTSTHHHHHHHHHH-
T ss_pred EEEecCCCCCchHHHHHHhcChhhhhHHHHHHHHHhhhhcccCCCCCeEEeCcccccCCCCCCccHHHHHHHHHHHhhC
Confidence 9999999888888888999999999999999999999999999999999999999999999999999999999999996
No 2
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]
Probab=99.97 E-value=7.7e-31 Score=256.87 Aligned_cols=376 Identities=17% Similarity=0.171 Sum_probs=254.0
Q ss_pred EEEEecCCCcccccCCceeEEEecccCCCCCCCCCCCCCCcccccCCCCcHHHHHHHHHcCCceEe-cCCcccceeeeec
Q 013838 26 VTIFVDATKTVATNDEHFICATVDWWPHDKCNYNHCPWGNSSVINLDLSHPLLANAIQAFQSLRIR-IGGSLQDQVLYDV 104 (435)
Q Consensus 26 ~~v~v~~~~~~~~i~~~f~g~sie~~~~~~~~~~~~~w~~~~~~~~~~~~~~l~~l~~~l~p~~LR-iGG~~~D~~~~~~ 104 (435)
.++.|+++..++.||.+++|+++| +.+++.|+|..-+.+..++.+..+++++.++|.|.+|+|| +|||.+|.|+|.+
T Consensus 4 a~~~v~~d~~ig~I~k~iYG~F~E--HlGr~vY~Giyepd~p~~d~~G~RkDVle~lk~Lk~P~lR~PGGnFvs~Y~WeD 81 (501)
T COG3534 4 ARAVVDTDYTIGKIDKRIYGHFIE--HLGRAVYEGIYEPDSPIADERGFRKDVLEALKDLKIPVLRWPGGNFVSGYHWED 81 (501)
T ss_pred cceeechhhccCcchhhhhhHHHH--hhccceeeeeecCCCCCcchhhhHHHHHHHHHhcCCceeecCCccccccccccc
Confidence 467899999999999999999999 6788999887656555556677899999999999999999 5999999999999
Q ss_pred CCCCCCCCCCcC------CCCCCCCccccccchhhHHHHHHHHhhcCCEEEEEeecCCCCcccCCCCCCCCCChHHHHHH
Q 013838 105 GDLKAPCHPFRK------MKDGLFGFSKGCLHMQRWDELNQLFNRTRAIVSFGLNALHGRHNIRHNAWGGAWDSNNARDF 178 (435)
Q Consensus 105 ~~~~~~~~p~~~------~~~~~~g~~~~~~~~~~~d~f~~f~~~~g~~~i~~lN~~~~~~~~~~~~~~~~w~~~~A~~~ 178 (435)
+.++...+|.+. .+++.||+ ++|++||+++|+++++.+|++++ ...+|++|
T Consensus 82 GIGP~e~Rp~rldlaW~t~EtN~~Gt----------~EF~~~~e~iGaep~~avN~Gsr-------------gvd~ar~~ 138 (501)
T COG3534 82 GIGPREERPRRLDLAWGTTETNEFGT----------HEFMDWCELIGAEPYIAVNLGSR-------------GVDEARNW 138 (501)
T ss_pred CcCchhhCchhhcccccccccccccH----------HHHHHHHHHhCCceEEEEecCCc-------------cHHHHHHH
Confidence 988776676544 37777886 99999999999999999999886 57899999
Q ss_pred HHHHH----------------hcCCccceeeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCeEECCCC
Q 013838 179 LKYTI----------------SMGYQIDSWEYGNELSGRTSIGASVDAELYGKDLINLKNIINELYKNSSSKPTILAPGG 242 (435)
Q Consensus 179 l~y~~----------------~~g~~v~~wElGNEpd~~~~~~~~~t~~~Ya~d~~~~~~~i~~~~p~~~~~~~~~gp~~ 242 (435)
++||+ +++++|++|.||||.|+.|++| ..++.+|++-..+++++++-++|+++ ..+.|.++
T Consensus 139 vEY~n~pggtywsdlR~~~G~~~P~nvK~w~lGNEm~GpWq~G-~~~a~EY~~~A~e~~k~~k~~d~t~e--~~v~g~a~ 215 (501)
T COG3534 139 VEYCNHPGGTYWSDLRRENGREEPWNVKYWGLGNEMDGPWQCG-HKTAPEYGRLANEYRKYMKYFDPTIE--NVVCGSAN 215 (501)
T ss_pred HHHccCCCCChhHHHHHhcCCCCCcccceEEeccccCCCcccc-cccCHHHHHHHHHHHHHHhhcCcccc--ceEEeecC
Confidence 99987 2467899999999999998887 45677888888888889988888752 23333222
Q ss_pred ---CCCHHHHHHHHhhhCCCccceEEEeeeCCCCCCCh-hhhhhccChhhhhhHHHHH-HHHHHHHHHhCC--CCceEEc
Q 013838 243 ---FFDQEWYAKFLQVSGSNVVNGVTHHIYNLGPGVDP-NLVSKILNPQRLSRVSETF-GNLKQTIEKHGP--WASAWVG 315 (435)
Q Consensus 243 ---~~~~~~~~~fl~~~~~~~id~vs~H~Y~~~~g~~~-~~~~~ll~~~~l~~~~~~~-~~~~~~~~~~~~--~~p~wl~ 315 (435)
..++.|.+.+|.++.. .+|++|+|.|..+...+. .....-+. ++.....+ ..+.-+.+++.+ +..+-+.
T Consensus 216 ~~n~~~~~W~~~vl~~~~e-~vD~ISlH~Y~Gn~~~~t~ny~~~~~~---~~~~i~~l~~~~d~Vk~k~r~kk~v~l~fD 291 (501)
T COG3534 216 GANPTDPNWEAVVLEEAYE-RVDYISLHYYKGNATDDTPNYWAKSLK---LDRYIDDLIKKIDYVKAKKRSKKRVGLSFD 291 (501)
T ss_pred CCCCCchHHHHHHHHHHhh-hcCeEEEEEecCccccCcHHHHHHHhh---hhHHHHHHHHHHHHHHhccccccceeEEEe
Confidence 3467999999988877 499999999964322111 11111111 11111111 112222233433 3456789
Q ss_pred ccccCcCCC-------C----CCc---chHHHHHHHHHHHhhhhhccCCeEEE--eeeccCccccc-ccC-CCCCCCcch
Q 013838 316 ESGGAYNSG-------G----RHV---SNTFVNSFWYLDQLGMSSKYNTKVYC--RQTLVGGNYGL-LNA-TTFIPNPDY 377 (435)
Q Consensus 316 Etns~~~~G-------~----~~v---sdtf~aaLw~lD~l~~~A~~g~~~v~--~q~l~g~~Y~l-~~~-~~~~p~P~Y 377 (435)
|.|..+..- . |+. -.+|-.||...-.+..+++.--+|.+ .-+++.--=.+ ... +.....|.|
T Consensus 292 EWnvWy~~~~~d~~~~~w~~~p~~Le~~ytl~Dal~~g~~l~~f~k~sdrV~iAniAQlVNvi~ai~~ekgg~~~~~~~y 371 (501)
T COG3534 292 EWNVWYHVRKEDLDRIPWGTAPGLLEQIYTLEDALFAGSLLNIFHKHSDRVRIANIAQLVNVLAAIMTEKGGPAWLTPIY 371 (501)
T ss_pred cccceeecchhhhccccCCCCCccccccchHHHHHHHHHHHHHHHhhcceeehhHHHHHHHHhhheeecCCCcceeeehh
Confidence 999876541 0 111 24555666555556666555544332 11122100001 111 124568999
Q ss_pred HHHHHHHHhcCCceeEeecCC----------CCceEEEEEeecCCC--ceeEeeeecC-CCccceeecC
Q 013838 378 YSALLWHRLMGKGVLSVATDG----------SSSLRSYAHCSKERL--TPLASQYLVG-KPVFPFSIDG 433 (435)
Q Consensus 378 y~~ll~~~~~G~~vl~~~~~~----------~~~~~~YA~~~~~~~--~~~~~~~~~~-~~~~~~~~~~ 433 (435)
|+..+++.+.+...|.+.+++ .+.+.+-|.+.++.. .+.+.|.-.. +.-++.++.|
T Consensus 372 ~~~~~~~~~g~~~~l~~~v~~p~yd~~~~~~vp~ld~sas~~~~~~~l~i~vvN~~~~d~~~~~i~l~G 440 (501)
T COG3534 372 YPFQMASVHGRGTALKVAVDSPTYDCELAEDVPYLDASASYDEEGGELTIFVVNRALEDALKLNISLNG 440 (501)
T ss_pred hhhhheeeccCceEEEEEeccCceeccccccCcceeeeeeecccCCeEEEEEEeccccccccceEEecc
Confidence 999999988877777776631 235666666655533 3444444322 2344555544
No 3
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=99.29 E-value=9.7e-11 Score=122.60 Aligned_cols=289 Identities=16% Similarity=0.194 Sum_probs=146.7
Q ss_pred cHHHHHHHHHcCCceEecCCcccceee-eecCCCCCCCCCCcCCCCCCCCccccccchhhHHHHHHHHhhcCCEEEEEee
Q 013838 75 HPLLANAIQAFQSLRIRIGGSLQDQVL-YDVGDLKAPCHPFRKMKDGLFGFSKGCLHMQRWDELNQLFNRTRAIVSFGLN 153 (435)
Q Consensus 75 ~~~l~~l~~~l~p~~LRiGG~~~D~~~-~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~d~f~~f~~~~g~~~i~~lN 153 (435)
+..|..+.+.+|--+||+=|-..|.+. +.... ++ | ...+.-+..|++++|..+.|++|++-|.
T Consensus 42 q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~-----------~~---~--~~~Ynf~~lD~i~D~l~~~g~~P~vel~ 105 (486)
T PF01229_consen 42 QEQLRELQEELGFRYVRFHGLFSDDMMVYSESD-----------ED---G--IPPYNFTYLDQILDFLLENGLKPFVELG 105 (486)
T ss_dssp HHHHHHHHCCS--SEEEES-TTSTTTT-EEEEE-----------TT---E--EEEE--HHHHHHHHHHHHCT-EEEEEE-
T ss_pred HHHHHHHHhccCceEEEEEeeccCchhhccccc-----------cC---C--CCcCChHHHHHHHHHHHHcCCEEEEEEE
Confidence 344555556678899999888665443 32200 00 0 0125567789999999999999999987
Q ss_pred cCCCCcccCCCCC-CCCCC-----hHH-------HHHHHHHHH-hcCC-cc--ceeeeeccCCCCCCCCCCCCHHHHHHH
Q 013838 154 ALHGRHNIRHNAW-GGAWD-----SNN-------ARDFLKYTI-SMGY-QI--DSWEYGNELSGRTSIGASVDAELYGKD 216 (435)
Q Consensus 154 ~~~~~~~~~~~~~-~~~w~-----~~~-------A~~~l~y~~-~~g~-~v--~~wElGNEpd~~~~~~~~~t~~~Ya~d 216 (435)
+.-.. .+.+.. .-.|. |.. ..++++... +.|. .| -+||+.||||+. .....-+.++|.+-
T Consensus 106 f~p~~--~~~~~~~~~~~~~~~~pp~~~~~W~~lv~~~~~h~~~RYG~~ev~~W~fEiWNEPd~~-~f~~~~~~~ey~~l 182 (486)
T PF01229_consen 106 FMPMA--LASGYQTVFWYKGNISPPKDYEKWRDLVRAFARHYIDRYGIEEVSTWYFEIWNEPDLK-DFWWDGTPEEYFEL 182 (486)
T ss_dssp SB-GG--GBSS--EETTTTEE-S-BS-HHHHHHHHHHHHHHHHHHHHHHHHTTSEEEESS-TTST-TTSGGG-HHHHHHH
T ss_pred echhh--hcCCCCccccccCCcCCcccHHHHHHHHHHHHHHHHhhcCCccccceeEEeCcCCCcc-cccCCCCHHHHHHH
Confidence 53211 111100 01111 122 233333332 2232 13 367999999985 22223367889999
Q ss_pred HHHHHHHHHHhhcCCCCCCeEECCCCC-CCHHHHHHHHhh---hCCCccceEEEeeeCCCCCCCh-hhhhhccChhhhhh
Q 013838 217 LINLKNIINELYKNSSSKPTILAPGGF-FDQEWYAKFLQV---SGSNVVNGVTHHIYNLGPGVDP-NLVSKILNPQRLSR 291 (435)
Q Consensus 217 ~~~~~~~i~~~~p~~~~~~~~~gp~~~-~~~~~~~~fl~~---~~~~~id~vs~H~Y~~~~g~~~-~~~~~ll~~~~l~~ 291 (435)
|+..+++||+++|. .++.||+.. ....|+.+|++- ... .+|++|+|.|+.+...+. ......+. ..++
T Consensus 183 y~~~~~~iK~~~p~----~~vGGp~~~~~~~~~~~~~l~~~~~~~~-~~DfiS~H~y~~~~~~~~~~~~~~~~~--~~~~ 255 (486)
T PF01229_consen 183 YDATARAIKAVDPE----LKVGGPAFAWAYDEWCEDFLEFCKGNNC-PLDFISFHSYGTDSAEDINENMYERIE--DSRR 255 (486)
T ss_dssp HHHHHHHHHHH-TT----SEEEEEEEETT-THHHHHHHHHHHHCT----SEEEEEEE-BESESE-SS-EEEEB----HHH
T ss_pred HHHHHHHHHHhCCC----CcccCccccccHHHHHHHHHHHHhcCCC-CCCEEEEEecccccccccchhHHhhhh--hHHH
Confidence 99999999999886 589899432 134677777653 222 589999999985421110 01111111 1223
Q ss_pred HHHHHHHHHHHHH-HhCCCCceEEcccccCcCCCCCCcchHHHHHHHHHHHhhhhhccCCeEEEee-------------e
Q 013838 292 VSETFGNLKQTIE-KHGPWASAWVGESGGAYNSGGRHVSNTFVNSFWYLDQLGMSSKYNTKVYCRQ-------------T 357 (435)
Q Consensus 292 ~~~~~~~~~~~~~-~~~~~~p~wl~Etns~~~~G~~~vsdtf~aaLw~lD~l~~~A~~g~~~v~~q-------------~ 357 (435)
+..+++.+++++. +..|.+|+.++|.|+.... ...+.|+...|-..+..++......++.+.-. .
T Consensus 256 ~~~~~~~~~~~~~~e~~p~~~~~~tE~n~~~~~-~~~~~dt~~~aA~i~k~lL~~~~~~l~~~sywt~sD~Fee~~~~~~ 334 (486)
T PF01229_consen 256 LFPELKETRPIINDEADPNLPLYITEWNASISP-RNPQHDTCFKAAYIAKNLLSNDGAFLDSFSYWTFSDRFEENGTPRK 334 (486)
T ss_dssp HHHHHHHHHHHHHTSSSTT--EEEEEEES-SST-T-GGGGSHHHHHHHHH-HHHHGGGT-SEEEES-SBS---TTSS-SS
T ss_pred HHHHHHHHHHHHhhccCCCCceeecccccccCC-CcchhccccchhhHHHHHHHhhhhhhhhhhccchhhhhhccCCCCC
Confidence 3345555655555 4557899999999986632 23445555444334554333221112221111 1
Q ss_pred ccCcccccccCCCCCCCcchHHHHHHHHhcCCcee
Q 013838 358 LVGGNYGLLNATTFIPNPDYYSALLWHRLMGKGVL 392 (435)
Q Consensus 358 l~g~~Y~l~~~~~~~p~P~Yy~~ll~~~~~G~~vl 392 (435)
.+-|.+||+... ..+.|.||+..+.+++ |.+++
T Consensus 335 pf~ggfGLlt~~-gI~KPa~~A~~~L~~l-g~~~~ 367 (486)
T PF01229_consen 335 PFHGGFGLLTKL-GIPKPAYYAFQLLNKL-GDRLV 367 (486)
T ss_dssp SSSS-S-SEECC-CEE-HHHHHHHHHTT---SEEE
T ss_pred ceecchhhhhcc-CCCchHHHHHHHHHhh-CceeE
Confidence 122446777665 5689999999999988 66554
No 4
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=98.86 E-value=2.8e-08 Score=94.51 Aligned_cols=106 Identities=16% Similarity=0.175 Sum_probs=76.6
Q ss_pred CCccceeeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCeEECCCCCC-------CHHHHHHHHhhhC-
Q 013838 186 GYQIDSWEYGNELSGRTSIGASVDAELYGKDLINLKNIINELYKNSSSKPTILAPGGFF-------DQEWYAKFLQVSG- 257 (435)
Q Consensus 186 g~~v~~wElGNEpd~~~~~~~~~t~~~Ya~d~~~~~~~i~~~~p~~~~~~~~~gp~~~~-------~~~~~~~fl~~~~- 257 (435)
+...++++.-||||... +..++|+++++.|+++.+.++. .+.++++|+... ..+|+++|++...
T Consensus 63 ~~~~~~ll~fNEPD~~~--qsn~~p~~aa~~w~~~~~~~~~------~~~~l~sPa~~~~~~~~~~g~~Wl~~F~~~~~~ 134 (239)
T PF11790_consen 63 HPGSKHLLGFNEPDLPG--QSNMSPEEAAALWKQYMNPLRS------PGVKLGSPAVAFTNGGTPGGLDWLSQFLSACAR 134 (239)
T ss_pred ccCccceeeecCCCCCC--CCCCCHHHHHHHHHHHHhHhhc------CCcEEECCeecccCCCCCCccHHHHHHHHhccc
Confidence 55688999999999853 6689999999999999888773 246999998732 2479999998764
Q ss_pred CCccceEEEeeeCCCCCCChhhhhhccChhhhhhHHHHHHHHHHHHHHhCCCCceEEcccccC
Q 013838 258 SNVVNGVTHHIYNLGPGVDPNLVSKILNPQRLSRVSETFGNLKQTIEKHGPWASAWVGESGGA 320 (435)
Q Consensus 258 ~~~id~vs~H~Y~~~~g~~~~~~~~ll~~~~l~~~~~~~~~~~~~~~~~~~~~p~wl~Etns~ 320 (435)
.-.+|++++|.|. .+. +.+... +..+.++++ +||||||.+-.
T Consensus 135 ~~~~D~iavH~Y~----~~~------------~~~~~~---i~~~~~~~~--kPIWITEf~~~ 176 (239)
T PF11790_consen 135 GCRVDFIAVHWYG----GDA------------DDFKDY---IDDLHNRYG--KPIWITEFGCW 176 (239)
T ss_pred CCCccEEEEecCC----cCH------------HHHHHH---HHHHHHHhC--CCEEEEeeccc
Confidence 2369999999992 111 112222 233333444 99999999854
No 5
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.46 E-value=3.2e-06 Score=81.66 Aligned_cols=218 Identities=16% Similarity=0.079 Sum_probs=110.6
Q ss_pred CcHHHHHHHHHcCCceEecCCcccceeeeecCCCCCCCCCCcCCCCCCCCccccccchhhHHHHHHHHhhcCCEEEEEee
Q 013838 74 SHPLLANAIQAFQSLRIRIGGSLQDQVLYDVGDLKAPCHPFRKMKDGLFGFSKGCLHMQRWDELNQLFNRTRAIVSFGLN 153 (435)
Q Consensus 74 ~~~~l~~l~~~l~p~~LRiGG~~~D~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~d~f~~f~~~~g~~~i~~lN 153 (435)
........++++|.-.||+.=. |..-..+.+ +... ..-.-.+++++++.|++.|..+|+.+.
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~------~~~~~~~~~--------~~~~----~~~~~~~ld~~v~~a~~~gi~vild~h 83 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVG------WEAYQEPNP--------GYNY----DETYLARLDRIVDAAQAYGIYVILDLH 83 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEE------STSTSTTST--------TTSB----THHHHHHHHHHHHHHHHTT-EEEEEEE
T ss_pred CHHHHHHHHHHCCCCEEEeCCC------HHHhcCCCC--------Cccc----cHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 4566778889999999997333 211000000 0000 011235579999999999999999987
Q ss_pred cCCCCcccCCCCCCCCCChHHHHHH----HHH-HHh--cCCccceeeeeccCCCCCCC--CCCCCHHHHHHHHHHHHHHH
Q 013838 154 ALHGRHNIRHNAWGGAWDSNNARDF----LKY-TIS--MGYQIDSWEYGNELSGRTSI--GASVDAELYGKDLINLKNII 224 (435)
Q Consensus 154 ~~~~~~~~~~~~~~~~w~~~~A~~~----l~y-~~~--~g~~v~~wElGNEpd~~~~~--~~~~t~~~Ya~d~~~~~~~i 224 (435)
...+ .... ...........+. ++. +.. ....+.+|||.|||+..... ....++.+|.+-+.+..++|
T Consensus 84 ~~~~--w~~~--~~~~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~I 159 (281)
T PF00150_consen 84 NAPG--WANG--GDGYGNNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAI 159 (281)
T ss_dssp ESTT--CSSS--TSTTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHH
T ss_pred cCcc--cccc--ccccccchhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccCCccccccccchhhhhHHHHHHHHH
Confidence 5310 0000 0011122222222 222 222 23357799999999986211 01225577888889999999
Q ss_pred HHhhcCCCCCCeEECCCC-CCCHHHHHHHHhh--hCCCccceEEEeeeCCCCCCChhhhhhccChhhhhhHHHHHHHHHH
Q 013838 225 NELYKNSSSKPTILAPGG-FFDQEWYAKFLQV--SGSNVVNGVTHHIYNLGPGVDPNLVSKILNPQRLSRVSETFGNLKQ 301 (435)
Q Consensus 225 ~~~~p~~~~~~~~~gp~~-~~~~~~~~~fl~~--~~~~~id~vs~H~Y~~~~g~~~~~~~~ll~~~~l~~~~~~~~~~~~ 301 (435)
++..|+. +.++++.. ..+.. ..+.+. ... ..+.+++|.|.... ...................++.+..
T Consensus 160 r~~~~~~---~i~~~~~~~~~~~~--~~~~~~P~~~~-~~~~~~~H~Y~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (281)
T PF00150_consen 160 RAADPNH---LIIVGGGGWGADPD--GAAADNPNDAD-NNDVYSFHFYDPYD---FSDQWNPGNWGDASALESSFRAALN 230 (281)
T ss_dssp HHTTSSS---EEEEEEHHHHTBHH--HHHHHSTTTTT-TSEEEEEEEETTTC---HHTTTSTCSHHHHHHHHHHHHHHHH
T ss_pred HhcCCcc---eeecCCCccccccc--hhhhcCccccc-CceeEEeeEeCCCC---cCCccccccchhhhHHHHHHHHHHH
Confidence 9998762 23333311 11111 111111 112 36899999998421 1000000001111122233344433
Q ss_pred HHHHhCCCCceEEcccccCcCCC
Q 013838 302 TIEKHGPWASAWVGESGGAYNSG 324 (435)
Q Consensus 302 ~~~~~~~~~p~wl~Etns~~~~G 324 (435)
.+.+ .++|+|+||++.....+
T Consensus 231 ~~~~--~g~pv~~gE~G~~~~~~ 251 (281)
T PF00150_consen 231 WAKK--NGKPVVVGEFGWSNNDG 251 (281)
T ss_dssp HHHH--TTSEEEEEEEESSTTTS
T ss_pred HHHH--cCCeEEEeCcCCcCCCC
Confidence 3333 35899999999865333
No 6
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=98.32 E-value=2.4e-05 Score=81.73 Aligned_cols=235 Identities=17% Similarity=0.181 Sum_probs=130.0
Q ss_pred HHHHHHHH---HhcCCccceeeeeccCCCC-----CCCCCCCCHHHHHHHHHH-HHHHHHHhhcCCCCCCeEECCCCC--
Q 013838 175 ARDFLKYT---ISMGYQIDSWEYGNELSGR-----TSIGASVDAELYGKDLIN-LKNIINELYKNSSSKPTILAPGGF-- 243 (435)
Q Consensus 175 A~~~l~y~---~~~g~~v~~wElGNEpd~~-----~~~~~~~t~~~Ya~d~~~-~~~~i~~~~p~~~~~~~~~gp~~~-- 243 (435)
|.-+++|. +++|.+|.+.-+.|||+.. ......|++++-++=.+. |.-+|++..+. .+.+|++-+-.
T Consensus 207 A~Y~vkfi~aY~~~GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g--~d~kI~~~D~n~~ 284 (496)
T PF02055_consen 207 ADYFVKFIQAYKKEGIPIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLG--KDVKILIYDHNRD 284 (496)
T ss_dssp HHHHHHHHHHHHCTT--ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT---TTSEEEEEEEEGG
T ss_pred HHHHHHHHHHHHHCCCCeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCC--CceEEEEEecCCc
Confidence 66666665 3579999999999999962 122457898775332222 56667665321 24677664422
Q ss_pred CCHHHHHHHHhhh-CCCccceEEEeeeCCCCCCChhhhhhccChhhhhhHHHHHHHHHHHHHHhCCCCceEEcccccCcC
Q 013838 244 FDQEWYAKFLQVS-GSNVVNGVTHHIYNLGPGVDPNLVSKILNPQRLSRVSETFGNLKQTIEKHGPWASAWVGESGGAYN 322 (435)
Q Consensus 244 ~~~~~~~~fl~~~-~~~~id~vs~H~Y~~~~g~~~~~~~~ll~~~~l~~~~~~~~~~~~~~~~~~~~~p~wl~Etns~~~ 322 (435)
..++|...+|+.. ..+.||.+.+|.|.. ++. +.. +.+ +.+.-|++.+|.||......
T Consensus 285 ~~~~~~~~il~d~~A~~yv~GiA~HwY~g----~~~-------~~~----------l~~-~h~~~P~k~l~~TE~~~g~~ 342 (496)
T PF02055_consen 285 NLPDYADTILNDPEAAKYVDGIAFHWYGG----DPS-------PQA----------LDQ-VHNKFPDKFLLFTEACCGSW 342 (496)
T ss_dssp GTTHHHHHHHTSHHHHTTEEEEEEEETTC----S-H-------CHH----------HHH-HHHHSTTSEEEEEEEESS-S
T ss_pred ccchhhhhhhcChhhHhheeEEEEECCCC----Cch-------hhH----------HHH-HHHHCCCcEEEeeccccCCC
Confidence 2357888888632 123699999999963 110 011 111 12346889999999853322
Q ss_pred CCCCCc-chHHHHHHHHHHHhhhhhccCCeEEEeeecc----Cc-----cc----ccccCC--CCCCCcchHHHHHHHHh
Q 013838 323 SGGRHV-SNTFVNSFWYLDQLGMSSKYNTKVYCRQTLV----GG-----NY----GLLNAT--TFIPNPDYYSALLWHRL 386 (435)
Q Consensus 323 ~G~~~v-sdtf~aaLw~lD~l~~~A~~g~~~v~~q~l~----g~-----~Y----~l~~~~--~~~p~P~Yy~~ll~~~~ 386 (435)
.....+ ...+..+..+...+...-+++...++..+++ || ++ -.++.. .+..+|.||++-=|+++
T Consensus 343 ~~~~~~~~g~w~~~~~y~~~ii~~lnn~~~gw~~WNl~LD~~GGP~~~~n~~d~~iivd~~~~~~~~~p~yY~~gHfSKF 422 (496)
T PF02055_consen 343 NWDTSVDLGSWDRAERYAHDIIGDLNNWVSGWIDWNLALDENGGPNWVGNFCDAPIIVDSDTGEFYKQPEYYAMGHFSKF 422 (496)
T ss_dssp TTS-SS-TTHHHHHHHHHHHHHHHHHTTEEEEEEEESEBETTS---TT---B--SEEEEGGGTEEEE-HHHHHHHHHHTT
T ss_pred CcccccccccHHHHHHHHHHHHHHHHhhceeeeeeeeecCCCCCCcccCCCCCceeEEEcCCCeEEEcHHHHHHHHHhcc
Confidence 111111 1234455555544444446666655444332 21 11 112221 24468999999999999
Q ss_pred c--CCceeEeecCCC-CceEEEEEeecCCC-ceeEeeeecCCCccceeecC
Q 013838 387 M--GKGVLSVATDGS-SSLRSYAHCSKERL-TPLASQYLVGKPVFPFSIDG 433 (435)
Q Consensus 387 ~--G~~vl~~~~~~~-~~~~~YA~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 433 (435)
+ |...+.++.... ..|.+-|+-++++. .+++.|......+|-+.|.+
T Consensus 423 V~PGa~RI~st~~~~~~~l~~vAF~nPDGs~vvVv~N~~~~~~~~~v~v~~ 473 (496)
T PF02055_consen 423 VRPGAVRIGSTSSSSDSGLEAVAFLNPDGSIVVVVLNRGDSDQNFSVTVKD 473 (496)
T ss_dssp S-TT-EEEEEEESSSTTTEEEEEEEETTSEEEEEEEE-SSS-EEEEEEEEC
T ss_pred cCCCCEEEEeeccCCCCceeEEEEECCCCCEEEEEEcCCCCccceEEEEec
Confidence 9 555565554322 37999999998887 56677777666666677754
No 7
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=98.28 E-value=2.2e-06 Score=79.96 Aligned_cols=95 Identities=13% Similarity=0.216 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHh------cCCccceeeeeccCCCCC--C---CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCeEECCC
Q 013838 173 NNARDFLKYTIS------MGYQIDSWEYGNELSGRT--S---IGASVDAELYGKDLINLKNIINELYKNSSSKPTILAPG 241 (435)
Q Consensus 173 ~~A~~~l~y~~~------~g~~v~~wElGNEpd~~~--~---~~~~~t~~~Ya~d~~~~~~~i~~~~p~~~~~~~~~gp~ 241 (435)
.=..+||.+... .+..|++|.|.|||+++. + ++...+.+++.+...+++++||+++|+ ++++||.
T Consensus 104 ~y~~ewV~~l~~~~g~a~~~~gvk~y~lDNEP~LW~~TH~dVHP~~~t~~El~~r~i~~AkaiK~~DP~----a~v~GP~ 179 (239)
T PF12891_consen 104 VYMDEWVNYLVNKYGNASTNGGVKYYSLDNEPDLWHSTHRDVHPEPVTYDELRDRSIEYAKAIKAADPD----AKVFGPV 179 (239)
T ss_dssp EEHHHHHHHHHHHH--TTSTTS--EEEESS-GGGHHHHTTTT--S---HHHHHHHHHHHHHHHHHH-TT----SEEEEEE
T ss_pred hHHHHHHHHHHHHHhccccCCCceEEEecCchHhhcccccccCCCCCCHHHHHHHHHHHHHHHHhhCCC----CeEeech
Confidence 346778887643 256699999999999874 2 377889999999999999999999987 4999996
Q ss_pred CC---------CC------------HHHHHHHHhh-------hCCCccceEEEeeeCC
Q 013838 242 GF---------FD------------QEWYAKFLQV-------SGSNVVNGVTHHIYNL 271 (435)
Q Consensus 242 ~~---------~~------------~~~~~~fl~~-------~~~~~id~vs~H~Y~~ 271 (435)
.. .+ ..|+.=||++ .|...+|++.+|+||.
T Consensus 180 ~wgw~~y~~~~~d~~~~~d~~~~g~~~fl~wyL~qm~~~~~~~G~RLLDvlDiH~YPq 237 (239)
T PF12891_consen 180 EWGWCGYFSSADDAPGWPDRAAHGNYDFLPWYLDQMKEAEKSTGKRLLDVLDIHYYPQ 237 (239)
T ss_dssp E-SHHHHHHTTTHHTTHHHHHHTTT-SHHHHHHHHHHHHHHHHTS-S-SEEEEEE--S
T ss_pred hhccceeeccCccccccccccccCCcchHHHHHHHHHHhhhhcCceeeeeeeeeecCC
Confidence 32 11 1255556653 3444799999999985
No 8
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=98.14 E-value=0.00017 Score=71.53 Aligned_cols=206 Identities=16% Similarity=0.120 Sum_probs=106.5
Q ss_pred CCCcHHHHHHHHHcCCceEecCCcccceeeeecCCCCCCCCCCcCCCCCCCCccccccchhhHHHHHHHHhhcCCEEEEE
Q 013838 72 DLSHPLLANAIQAFQSLRIRIGGSLQDQVLYDVGDLKAPCHPFRKMKDGLFGFSKGCLHMQRWDELNQLFNRTRAIVSFG 151 (435)
Q Consensus 72 ~~~~~~l~~l~~~l~p~~LRiGG~~~D~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~d~f~~f~~~~g~~~i~~ 151 (435)
+....++.+++|.-|.-.||+ + .|..... . +..+..+--++.+=+++.|.++++.
T Consensus 23 ~G~~~d~~~ilk~~G~N~vRl------R-vwv~P~~--------------~----g~~~~~~~~~~akrak~~Gm~vlld 77 (332)
T PF07745_consen 23 NGQEKDLFQILKDHGVNAVRL------R-VWVNPYD--------------G----GYNDLEDVIALAKRAKAAGMKVLLD 77 (332)
T ss_dssp TSSB--HHHHHHHTT--EEEE------E-E-SS-TT--------------T----TTTSHHHHHHHHHHHHHTT-EEEEE
T ss_pred CCCCCCHHHHHHhcCCCeEEE------E-eccCCcc--------------c----ccCCHHHHHHHHHHHHHCCCeEEEe
Confidence 445677889999999877764 2 2332110 0 1223344466677778899999998
Q ss_pred eecCCCCcccCCCCCCCCCChH----HHHHHHHH-------HHhcCCccceeeeeccCCCC--CCCCCCCCHHHHHHHHH
Q 013838 152 LNALHGRHNIRHNAWGGAWDSN----NARDFLKY-------TISMGYQIDSWEYGNELSGR--TSIGASVDAELYGKDLI 218 (435)
Q Consensus 152 lN~~~~~~~~~~~~~~~~w~~~----~A~~~l~y-------~~~~g~~v~~wElGNEpd~~--~~~~~~~t~~~Ya~d~~ 218 (435)
+-+..-=.++....-=.+|... -+.++-+| .+..|....-+|||||.+.. +..+..-+.+++++-+.
T Consensus 78 fHYSD~WaDPg~Q~~P~aW~~~~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ 157 (332)
T PF07745_consen 78 FHYSDFWADPGKQNKPAAWANLSFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLN 157 (332)
T ss_dssp E-SSSS--BTTB-B--TTCTSSSHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHH
T ss_pred ecccCCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHH
Confidence 8763210000000001345432 22233333 34578889999999998764 23344567788888888
Q ss_pred HHHHHHHHhhcCCCCCCeEECCCCCCCHHHHHHHHhhhCCCccceEEEeeeCCCCCCChhhhhhccChhhhhhHHHHHHH
Q 013838 219 NLKNIINELYKNSSSKPTILAPGGFFDQEWYAKFLQVSGSNVVNGVTHHIYNLGPGVDPNLVSKILNPQRLSRVSETFGN 298 (435)
Q Consensus 219 ~~~~~i~~~~p~~~~~~~~~gp~~~~~~~~~~~fl~~~~~~~id~vs~H~Y~~~~g~~~~~~~~ll~~~~l~~~~~~~~~ 298 (435)
.-.+++|++.|+++...-+..|+......|+-+.|...+. ..|.+.+++||.-.+ .++.+ ...
T Consensus 158 ag~~AVr~~~p~~kV~lH~~~~~~~~~~~~~f~~l~~~g~-d~DviGlSyYP~w~~-------------~l~~l---~~~ 220 (332)
T PF07745_consen 158 AGIKAVREVDPNIKVMLHLANGGDNDLYRWFFDNLKAAGV-DFDVIGLSYYPFWHG-------------TLEDL---KNN 220 (332)
T ss_dssp HHHHHHHTHSSTSEEEEEES-TTSHHHHHHHHHHHHHTTG-G-SEEEEEE-STTST--------------HHHH---HHH
T ss_pred HHHHHHHhcCCCCcEEEEECCCCchHHHHHHHHHHHhcCC-CcceEEEecCCCCcc-------------hHHHH---HHH
Confidence 8889999987764211111233222122444444444554 589999999996322 12222 234
Q ss_pred HHHHHHHhCCCCceEEcccccCc
Q 013838 299 LKQTIEKHGPWASAWVGESGGAY 321 (435)
Q Consensus 299 ~~~~~~~~~~~~p~wl~Etns~~ 321 (435)
++.+.++++ +|+++.||+-.+
T Consensus 221 l~~l~~ry~--K~V~V~Et~yp~ 241 (332)
T PF07745_consen 221 LNDLASRYG--KPVMVVETGYPW 241 (332)
T ss_dssp HHHHHHHHT---EEEEEEE---S
T ss_pred HHHHHHHhC--CeeEEEeccccc
Confidence 555556674 999999998654
No 9
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=97.72 E-value=6e-05 Score=60.15 Aligned_cols=74 Identities=20% Similarity=0.101 Sum_probs=41.7
Q ss_pred CccceeeeeccCCCCCC-----CCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCeEECCCCCCCHHHHHHHHhhhC-CCc
Q 013838 187 YQIDSWEYGNELSGRTS-----IGASVDAELYGKDLINLKNIINELYKNSSSKPTILAPGGFFDQEWYAKFLQVSG-SNV 260 (435)
Q Consensus 187 ~~v~~wElGNEpd~~~~-----~~~~~t~~~Ya~d~~~~~~~i~~~~p~~~~~~~~~gp~~~~~~~~~~~fl~~~~-~~~ 260 (435)
.+|.+|||+||+++... .......+.|.+-.++..++|++++|+. |..+|- ...+... +++.. + .
T Consensus 9 ~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~---pvt~g~-~~~~~~~----~~~~~~~-~ 79 (88)
T PF12876_consen 9 PRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQ---PVTSGF-WGGDWED----LEQLQAE-N 79 (88)
T ss_dssp GGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS----EE--B---S-TTH----HHHS--T-T
T ss_pred CCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCC---cEEeec-ccCCHHH----HHHhchh-c
Confidence 45889999999444322 1223456888899999999999999873 333332 2211112 33332 3 4
Q ss_pred cceEEEeee
Q 013838 261 VNGVTHHIY 269 (435)
Q Consensus 261 id~vs~H~Y 269 (435)
+|++|+|.|
T Consensus 80 ~DvisfH~Y 88 (88)
T PF12876_consen 80 LDVISFHPY 88 (88)
T ss_dssp -SSEEB-EE
T ss_pred CCEEeeecC
Confidence 899999998
No 10
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=97.55 E-value=0.0011 Score=64.68 Aligned_cols=209 Identities=12% Similarity=0.075 Sum_probs=113.1
Q ss_pred HHHHHHHhcCCccceeeeeccCCCCC-CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCeEECCCCCCC-HHHHHHHHh
Q 013838 177 DFLKYTISMGYQIDSWEYGNELSGRT-SIGASVDAELYGKDLINLKNIINELYKNSSSKPTILAPGGFFD-QEWYAKFLQ 254 (435)
Q Consensus 177 ~~l~y~~~~g~~v~~wElGNEpd~~~-~~~~~~t~~~Ya~d~~~~~~~i~~~~p~~~~~~~~~gp~~~~~-~~~~~~fl~ 254 (435)
+.|.|.+..|.++++..+=||||.-+ ..+..|+|++-.+=++++..-+.+ ..+++-|+...+ +.|-+..|+
T Consensus 157 ~fv~~m~~nGvnlyalSVQNEPd~~p~~d~~~wtpQe~~rF~~qyl~si~~-------~~rV~~pes~~~~~~~~dp~ln 229 (433)
T COG5520 157 DFVLEMKNNGVNLYALSVQNEPDYAPTYDWCWWTPQEELRFMRQYLASINA-------EMRVIIPESFKDLPNMSDPILN 229 (433)
T ss_pred HHHHHHHhCCCceeEEeeccCCcccCCCCcccccHHHHHHHHHHhhhhhcc-------ccEEecchhccccccccccccc
Confidence 34445567899999999999999764 336689998876666666554443 358888887532 345444454
Q ss_pred hhC-CCccceEEEeeeCCCCCCChhhhhhccChhhhhhHHHHHHHHHHHHHHhCCCCceEEcccccCcCCCCCCcchHHH
Q 013838 255 VSG-SNVVNGVTHHIYNLGPGVDPNLVSKILNPQRLSRVSETFGNLKQTIEKHGPWASAWVGESGGAYNSGGRHVSNTFV 333 (435)
Q Consensus 255 ~~~-~~~id~vs~H~Y~~~~g~~~~~~~~ll~~~~l~~~~~~~~~~~~~~~~~~~~~p~wl~Etns~~~~G~~~vsdtf~ 333 (435)
.-. -..||.+.+|.|... ... -| +...+....+|.+|++|+-... .-++-.|.
T Consensus 230 Dp~a~a~~~ilg~H~Ygg~--v~~-------~p-------------~~lak~~~~gKdlwmte~y~~e--sd~~s~dr-- 283 (433)
T COG5520 230 DPKALANMDILGTHLYGGQ--VSD-------QP-------------YPLAKQKPAGKDLWMTECYPPE--SDPNSADR-- 283 (433)
T ss_pred CHhHhcccceeEeeecccc--ccc-------ch-------------hhHhhCCCcCCceEEeecccCC--CCCCcchH--
Confidence 211 125999999999521 100 00 1111123447999999984321 01111233
Q ss_pred HHHHHHHHhhhhhccC-CeEEEeeeccCcccccccCCCCCCCcchHHHHHHHHhcCCc--eeEeecCCCCceEEEEEeec
Q 013838 334 NSFWYLDQLGMSSKYN-TKVYCRQTLVGGNYGLLNATTFIPNPDYYSALLWHRLMGKG--VLSVATDGSSSLRSYAHCSK 410 (435)
Q Consensus 334 aaLw~lD~l~~~A~~g-~~~v~~q~l~g~~Y~l~~~~~~~p~P~Yy~~ll~~~~~G~~--vl~~~~~~~~~~~~YA~~~~ 410 (435)
.++|...++..+...| .+.+.-..+. .+|+..... -.-.-.-|.+--+...++.. +|+.+.+--..+.+-|+-.+
T Consensus 284 ~~~~~~~hi~~gm~~gg~~ayv~W~i~-~~~~~~~~~-gg~~k~~y~ma~fskf~q~gy~rldat~sp~~nvyvsayvg~ 361 (433)
T COG5520 284 EALHVALHIHIGMTEGGFQAYVWWNIR-LDYGGGPNH-GGNSKRGYCMAHFSKFVQNGYVRLDATKSPYGNVYVSAYVGP 361 (433)
T ss_pred HHHHHHHHHHhhccccCccEEEEEEEe-eccCCCcCC-CcccccceeEeeeeeeccCCceEEecccCccceEEEEEEecC
Confidence 6788887776655544 4544433222 233332221 01112344555556666666 33333221224444454444
Q ss_pred CCCceeEeee
Q 013838 411 ERLTPLASQY 420 (435)
Q Consensus 411 ~~~~~~~~~~ 420 (435)
++-.|++||.
T Consensus 362 nkvvivaink 371 (433)
T COG5520 362 NKVVIVAINK 371 (433)
T ss_pred CcEEEEeecc
Confidence 5556666665
No 11
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=97.10 E-value=0.095 Score=50.44 Aligned_cols=214 Identities=13% Similarity=0.078 Sum_probs=114.6
Q ss_pred CCCCcHHHHHHHHHcCCceEecCCcccceeeeecCCCCCCCCCCcCCCCCCCCccccccchhhHHHHHHHHhhcCCEEEE
Q 013838 71 LDLSHPLLANAIQAFQSLRIRIGGSLQDQVLYDVGDLKAPCHPFRKMKDGLFGFSKGCLHMQRWDELNQLFNRTRAIVSF 150 (435)
Q Consensus 71 ~~~~~~~l~~l~~~l~p~~LRiGG~~~D~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~d~f~~f~~~~g~~~i~ 150 (435)
.+...++..+++|.-|.-++|+ -.|.+.... +. .++.-+.-.-..--++..=++..|.++++
T Consensus 61 ~ng~~qD~~~iLK~~GvNyvRl-------RvwndP~ds--------ng---n~yggGnnD~~k~ieiakRAk~~GmKVl~ 122 (403)
T COG3867 61 TNGVRQDALQILKNHGVNYVRL-------RVWNDPYDS--------NG---NGYGGGNNDLKKAIEIAKRAKNLGMKVLL 122 (403)
T ss_pred cCChHHHHHHHHHHcCcCeEEE-------EEecCCccC--------CC---CccCCCcchHHHHHHHHHHHHhcCcEEEe
Confidence 3456788889999999988885 134432110 00 01100110111113455556777999998
Q ss_pred EeecCCCCcccCCCCCCCCCChHH----HHHHHHH-------HHhcCCccceeeeeccCCCC--CCCCCCCCHHHHHHHH
Q 013838 151 GLNALHGRHNIRHNAWGGAWDSNN----ARDFLKY-------TISMGYQIDSWEYGNELSGR--TSIGASVDAELYGKDL 217 (435)
Q Consensus 151 ~lN~~~~~~~~~~~~~~~~w~~~~----A~~~l~y-------~~~~g~~v~~wElGNEpd~~--~~~~~~~t~~~Ya~d~ 217 (435)
..-+..-=.++.....-.+|.-.+ -+++-+| .++.|....-.|+|||.++. |..|..-+-+..++-+
T Consensus 123 dFHYSDfwaDPakQ~kPkaW~~l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~L~ 202 (403)
T COG3867 123 DFHYSDFWADPAKQKKPKAWENLNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEGRNFDKMAALL 202 (403)
T ss_pred eccchhhccChhhcCCcHHhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceeccCCCCcChHHHHHHH
Confidence 876532100011001112342111 1122223 23567778889999999874 2334433556677777
Q ss_pred HHHHHHHHHhhcCCCCCCeEECCCCCCCHHHHHHHHhhhCCCccceEEEeeeCCCCCCChhhhhhccChhhhhhHHHHHH
Q 013838 218 INLKNIINELYKNSSSKPTILAPGGFFDQEWYAKFLQVSGSNVVNGVTHHIYNLGPGVDPNLVSKILNPQRLSRVSETFG 297 (435)
Q Consensus 218 ~~~~~~i~~~~p~~~~~~~~~gp~~~~~~~~~~~fl~~~~~~~id~vs~H~Y~~~~g~~~~~~~~ll~~~~l~~~~~~~~ 297 (435)
.+-.++++++.|+++.-..+.-|.......|+-+=|.+.+. ..|.+...+||+-.| ++.+ +. .
T Consensus 203 n~g~~avrev~p~ikv~lHla~g~~n~~y~~~fd~ltk~nv-dfDVig~SyYpyWhg----tl~n---------L~---~ 265 (403)
T COG3867 203 NAGIRAVREVSPTIKVALHLAEGENNSLYRWIFDELTKRNV-DFDVIGSSYYPYWHG----TLNN---------LT---T 265 (403)
T ss_pred HHHhhhhhhcCCCceEEEEecCCCCCchhhHHHHHHHHcCC-CceEEeeeccccccC----cHHH---------HH---h
Confidence 77778888877765322222334444334565544545554 489999999986422 1111 11 2
Q ss_pred HHHHHHHHhCCCCceEEcccccCc
Q 013838 298 NLKQTIEKHGPWASAWVGESGGAY 321 (435)
Q Consensus 298 ~~~~~~~~~~~~~p~wl~Etns~~ 321 (435)
.+..+.++|. +.+.+-|+.-.|
T Consensus 266 nl~dia~rY~--K~VmV~Etay~y 287 (403)
T COG3867 266 NLNDIASRYH--KDVMVVETAYTY 287 (403)
T ss_pred HHHHHHHHhc--CeEEEEEeccee
Confidence 3455555665 789999987644
No 12
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=97.03 E-value=0.21 Score=47.78 Aligned_cols=66 Identities=12% Similarity=0.021 Sum_probs=41.0
Q ss_pred ccchhhHHHHHHHHhhcCCEEEEEeecCCCCcccCCCCCCCCCCh-----HHHHHHHHHH----HhcCCccceeeeeccC
Q 013838 128 CLHMQRWDELNQLFNRTRAIVSFGLNALHGRHNIRHNAWGGAWDS-----NNARDFLKYT----ISMGYQIDSWEYGNEL 198 (435)
Q Consensus 128 ~~~~~~~d~f~~f~~~~g~~~i~~lN~~~~~~~~~~~~~~~~w~~-----~~A~~~l~y~----~~~g~~v~~wElGNEp 198 (435)
....+..|+++++|++.|.++-...=+=.. ....|.. +....+.+|. ...+.++..|++.|||
T Consensus 12 ~~n~~~~D~~~~~a~~~gi~v~gH~l~W~~--------~~P~W~~~~~~~~~~~~~~~~i~~v~~ry~g~i~~wdV~NE~ 83 (254)
T smart00633 12 QFNFSGADAIVNFAKENGIKVRGHTLVWHS--------QTPDWVFNLSKETLLARLENHIKTVVGRYKGKIYAWDVVNEA 83 (254)
T ss_pred ccChHHHHHHHHHHHHCCCEEEEEEEeecc--------cCCHhhhcCCHHHHHHHHHHHHHHHHHHhCCcceEEEEeeec
Confidence 445566799999999999997543211110 1123432 1234455553 3456679999999999
Q ss_pred CCC
Q 013838 199 SGR 201 (435)
Q Consensus 199 d~~ 201 (435)
...
T Consensus 84 ~~~ 86 (254)
T smart00633 84 LHD 86 (254)
T ss_pred ccC
Confidence 864
No 13
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=96.46 E-value=0.052 Score=54.52 Aligned_cols=167 Identities=13% Similarity=0.027 Sum_probs=78.2
Q ss_pred HHHHHhhcCCEEEEEeecC-----CCCcccCCCC-----CCCCCChHHHHHHHHHH---HhcCCccceeeeeccCCCCC-
Q 013838 137 LNQLFNRTRAIVSFGLNAL-----HGRHNIRHNA-----WGGAWDSNNARDFLKYT---ISMGYQIDSWEYGNELSGRT- 202 (435)
Q Consensus 137 f~~f~~~~g~~~i~~lN~~-----~~~~~~~~~~-----~~~~w~~~~A~~~l~y~---~~~g~~v~~wElGNEpd~~~- 202 (435)
|++-+++.|++.+....-. +.......++ -...|-..-|.-|++++ ++.|.++.+.+.=|||+..+
T Consensus 109 fL~~Ak~rGV~~f~aFSNSPP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~NEP~~~W~ 188 (384)
T PF14587_consen 109 FLKAAKERGVNIFEAFSNSPPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADVVKHYKKWGINFDYISPFNEPQWNWA 188 (384)
T ss_dssp HHHHHHHTT---EEEE-SSS-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S-TTS-GG
T ss_pred HHHHHHHcCCCeEEEeecCCCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHhcCCccceeCCcCCCCCCCC
Confidence 7888999999877754211 0000000000 00111122355555544 45788999999999999754
Q ss_pred ---CCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCeEECCCCC-C------------CHHHHHHHHhhhCCC-------
Q 013838 203 ---SIGASVDAELYGKDLINLKNIINELYKNSSSKPTILAPGGF-F------------DQEWYAKFLQVSGSN------- 259 (435)
Q Consensus 203 ---~~~~~~t~~~Ya~d~~~~~~~i~~~~p~~~~~~~~~gp~~~-~------------~~~~~~~fl~~~~~~------- 259 (435)
+-|+.+++++-++-.+.+++.|++.-.+ .+|..++.. . ...-+..|++.....
T Consensus 189 ~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~----t~I~~~Ea~~~~~l~~~~~~~~~r~~~i~~ff~~~s~~yi~~l~~ 264 (384)
T PF14587_consen 189 GGSQEGCHFTNEEQADVIRALDKALKKRGLS----TKISACEAGDWEYLYKTDKNDWGRGNQIEAFFNPDSSTYIGDLPN 264 (384)
T ss_dssp --SS-B----HHHHHHHHHHHHHHHHHHT-S-----EEEEEEESSGGGGS---S-TTS---HHHHHHSTTSTT--TT-TT
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHHHhcCCC----ceEEecchhhHHHHhhccCCchhhhhhHHhhcCCCchhhhhcccc
Confidence 3377899988888888888888886332 356555421 0 012346777654321
Q ss_pred ccceEEEeeeCCCCCCChhhhhhccChhhhhhHHHHHHHHHHHHHHhCCCCceEEcccccCc
Q 013838 260 VVNGVTHHIYNLGPGVDPNLVSKILNPQRLSRVSETFGNLKQTIEKHGPWASAWVGESGGAY 321 (435)
Q Consensus 260 ~id~vs~H~Y~~~~g~~~~~~~~ll~~~~l~~~~~~~~~~~~~~~~~~~~~p~wl~Etns~~ 321 (435)
.-..|+-|.|.... + .+.+...-+.+.+.++++.+++++|.+|+.-..
T Consensus 265 v~~~i~~HsYwt~~---~-----------~~~l~~~R~~~~~~~~~~~~~~~~wqtE~~il~ 312 (384)
T PF14587_consen 265 VPNIISGHSYWTDS---P-----------WDDLRDIRKQLADKLDKYSPGLKYWQTEYCILG 312 (384)
T ss_dssp EEEEEEE--TT-SS---S-----------HHHHHHHHHHHHHHHHTTSS--EEEE----S--
T ss_pred chhheeecccccCC---C-----------HHHHHHHHHHHHHHHHhhCcCCceeeeeeeecc
Confidence 23578999997531 1 122233334566777788899999999986543
No 14
>COG3664 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=96.38 E-value=0.028 Score=56.30 Aligned_cols=180 Identities=17% Similarity=0.163 Sum_probs=101.1
Q ss_pred cceeeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCeEECCCCCCCHHHHHHHHhhhCCCccceEEEee
Q 013838 189 IDSWEYGNELSGRTSIGASVDAELYGKDLINLKNIINELYKNSSSKPTILAPGGFFDQEWYAKFLQVSGSNVVNGVTHHI 268 (435)
Q Consensus 189 v~~wElGNEpd~~~~~~~~~t~~~Ya~d~~~~~~~i~~~~p~~~~~~~~~gp~~~~~~~~~~~fl~~~~~~~id~vs~H~ 268 (435)
.-.|++-|||+.. ..-.+|-+-+...+ ++.+|.+ .+-| ...++....|++. .+ .||+|+.|.
T Consensus 105 kw~f~~~~~pn~~------ad~~eyfk~y~~~a---~~~~p~i----~vg~---~w~~e~l~~~~k~-~d-~idfvt~~a 166 (428)
T COG3664 105 KWPFYSPNEPNLL------ADKQEYFKLYDATA---RQRAPSI----QVGG---SWNTERLHEFLKK-AD-EIDFVTELA 166 (428)
T ss_pred ecceeecCCCCcc------cchHHHHHHHHhhh---hccCcce----eecc---ccCcHHHhhhhhc-cC-cccceeecc
Confidence 4578999999986 23334422222222 2444442 3322 2233445566653 33 499999999
Q ss_pred eCCCC-CCC-hhhhhhccChhhhhhHHHHHHHHHHHHHHhCCCCceEEcccccCcCCCCCCcchHHHHHHHHHHHhhhhh
Q 013838 269 YNLGP-GVD-PNLVSKILNPQRLSRVSETFGNLKQTIEKHGPWASAWVGESGGAYNSGGRHVSNTFVNSFWYLDQLGMSS 346 (435)
Q Consensus 269 Y~~~~-g~~-~~~~~~ll~~~~l~~~~~~~~~~~~~~~~~~~~~p~wl~Etns~~~~G~~~vsdtf~aaLw~lD~l~~~A 346 (435)
|.... +.+ +...+..+.++ .......+.++..+++++-++|+.++|.|..+ ++...+-++|.+|--.+..|..+.
T Consensus 167 ~~~~av~~~~~~~~~~~l~~~--~~~l~~~r~~~d~i~~~~~~~pl~~~~wntlt-~~~~~~n~sy~raa~i~~~Lr~~g 243 (428)
T COG3664 167 NSVDAVDFSTPGAEEVKLSEL--KRTLEDLRGLKDLIQHHSLGLPLLLTNWNTLT-GPREPTNGSYVRAAYIMRLLREAG 243 (428)
T ss_pred cccccccccCCCchhhhhhhh--hhhhhHHHHHHHHHHhccCCCcceeecccccC-CCccccCceeehHHHHHHHHHhcC
Confidence 97432 111 11111122222 34556677888888988889999999999877 444456677777655555554432
Q ss_pred ccCCe--------EE---Eee--eccCcccccccCCCCCCCcchHHHHHHHHhcCCcee
Q 013838 347 KYNTK--------VY---CRQ--TLVGGNYGLLNATTFIPNPDYYSALLWHRLMGKGVL 392 (435)
Q Consensus 347 ~~g~~--------~v---~~q--~l~g~~Y~l~~~~~~~p~P~Yy~~ll~~~~~G~~vl 392 (435)
..-.. .. +.+ .++ +..+++++. ...+|.|+..+++.++ |+.++
T Consensus 244 ~~v~a~~yW~~sdl~e~~g~~~~~~~-~gfel~~~~-~~rrpa~~~~l~~n~L-g~~~l 299 (428)
T COG3664 244 SPVDAFGYWTNSDLHEEHGPPEAPFV-GGFELFAPY-GGRRPAWMAALFFNRL-GRTLL 299 (428)
T ss_pred ChhhhhhhhhcccccccCCCcccccc-cceeeeccc-ccchhHHHHHHHHHHH-HHHhh
Confidence 22110 00 111 111 222344443 3469999999999999 76554
No 15
>PRK10150 beta-D-glucuronidase; Provisional
Probab=96.37 E-value=0.11 Score=56.38 Aligned_cols=67 Identities=15% Similarity=0.174 Sum_probs=37.4
Q ss_pred ccceeeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCeEECCCCCCCHHHHHHHHhhhCCCccceEEEe
Q 013838 188 QIDSWEYGNELSGRTSIGASVDAELYGKDLINLKNIINELYKNSSSKPTILAPGGFFDQEWYAKFLQVSGSNVVNGVTHH 267 (435)
Q Consensus 188 ~v~~wElGNEpd~~~~~~~~~t~~~Ya~d~~~~~~~i~~~~p~~~~~~~~~gp~~~~~~~~~~~fl~~~~~~~id~vs~H 267 (435)
.|..|.+|||+... .+....-++++.+++|+.+|+ ++...+-...... .. +.... .+|.+++|
T Consensus 408 SIi~Ws~gNE~~~~--------~~~~~~~~~~l~~~~k~~Dpt---R~vt~~~~~~~~~--~~---~~~~~-~~Dv~~~N 470 (604)
T PRK10150 408 SVVMWSIANEPASR--------EQGAREYFAPLAELTRKLDPT---RPVTCVNVMFATP--DT---DTVSD-LVDVLCLN 470 (604)
T ss_pred eEEEEeeccCCCcc--------chhHHHHHHHHHHHHHhhCCC---CceEEEecccCCc--cc---ccccC-cccEEEEc
Confidence 37799999998642 122223456778888998876 2322221100000 00 11112 58999999
Q ss_pred eeCC
Q 013838 268 IYNL 271 (435)
Q Consensus 268 ~Y~~ 271 (435)
.|+.
T Consensus 471 ~Y~~ 474 (604)
T PRK10150 471 RYYG 474 (604)
T ss_pred ccce
Confidence 8863
No 16
>smart00813 Alpha-L-AF_C Alpha-L-arabinofuranosidase C-terminus. This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase. This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides.
Probab=94.95 E-value=0.22 Score=45.45 Aligned_cols=64 Identities=19% Similarity=0.175 Sum_probs=46.6
Q ss_pred CCCCcchHHHHHHHHhcCCceeEeecCCC---------CceEEEEEeecCCC--ceeEeeeecC-CCccceeecCC
Q 013838 371 FIPNPDYYSALLWHRLMGKGVLSVATDGS---------SSLRSYAHCSKERL--TPLASQYLVG-KPVFPFSIDGR 434 (435)
Q Consensus 371 ~~p~P~Yy~~ll~~~~~G~~vl~~~~~~~---------~~~~~YA~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~ 434 (435)
...+|.||+..||++++|.+++++.+.+. +.+.+-|.+..++. .+.+.|+... .-.+-+.++|.
T Consensus 64 ~~~t~~Yyv~~lfs~~~g~~~l~~~v~~~~~~~~~~~~~~ld~sA~~~~~~~~~~v~vvN~~~~~~~~~~l~l~g~ 139 (189)
T smart00813 64 AWRTTTYYVFQLFSKHQGGTVLPVTISSPTYDGEDSDVPALDASASKDEDGGSLTVKVVNRSPEEAVTVTISLRGL 139 (189)
T ss_pred EEECCcCHHHHHhhhhCCceEEEEEeeCCccccCcccCCcEEEEEEEeCCCCEEEEEEEeCCCCcCEEEEEEecCC
Confidence 55789999999999999999999876422 46777777766543 4566787644 45566666763
No 17
>PF06964 Alpha-L-AF_C: Alpha-L-arabinofuranosidase C-terminus; InterPro: IPR010720 This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (3.2.1.55 from EC). This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides [].; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process; PDB: 3FW6_A 3II1_A 3S2C_K 1QW9_A 1PZ3_B 1PZ2_B 1QW8_A 3UG4_A 3UG3_A 4ATW_B ....
Probab=93.93 E-value=0.2 Score=45.19 Aligned_cols=98 Identities=18% Similarity=0.259 Sum_probs=58.4
Q ss_pred chHHHHHHHHHHHhhhhhccCCe--EEEeeeccC--ccc----ccc--cCCCCCCCcchHHHHHHHHhcCCceeEeecCC
Q 013838 329 SNTFVNSFWYLDQLGMSSKYNTK--VYCRQTLVG--GNY----GLL--NATTFIPNPDYYSALLWHRLMGKGVLSVATDG 398 (435)
Q Consensus 329 sdtf~aaLw~lD~l~~~A~~g~~--~v~~q~l~g--~~Y----~l~--~~~~~~p~P~Yy~~ll~~~~~G~~vl~~~~~~ 398 (435)
..++.+||..+-+|..+-|++-. +-+.-.++. +.+ .++ +.+....+|.||+..||+++.|.++|
T Consensus 17 ~~~l~~AL~~A~~l~~~eRnsD~V~ma~~A~l~~~~~~~~w~~~li~~~~~~~~~tpsY~v~~lf~~~~g~~~l------ 90 (177)
T PF06964_consen 17 RYTLRDALAEAAFLNGFERNSDVVKMACYAPLVNNIGDTQWTPDLITFDGDQVFGTPSYYVQKLFSNHRGDTVL------ 90 (177)
T ss_dssp --BHHHHHHHHHHHHHHHHTTTTEEEEEEE-SBSTTS------SEEEETTSEEEESHHHHHHHHHHHCTTSEEE------
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEeEEccchhhccccccccccceEEcCCCCEEECchHHHHHHHHhcCCCeEe------
Confidence 35566666666667666666633 333333442 111 232 22234579999999999999999999
Q ss_pred CCceEEEEEeecCC--CceeEeeeecCCCccceeecC
Q 013838 399 SSSLRSYAHCSKER--LTPLASQYLVGKPVFPFSIDG 433 (435)
Q Consensus 399 ~~~~~~YA~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 433 (435)
+.+-+-|.+..++ ..+-+.|+....-++-+.++|
T Consensus 91 -~~l~~~As~d~~~~~l~v~vVN~~~~~~~v~l~l~g 126 (177)
T PF06964_consen 91 -PPLDVSASRDEDGGELYVKVVNRSSEPQTVTLNLQG 126 (177)
T ss_dssp -ESEEEEEEEETTTTEEEEEEEE-SSSBEEEEEEETT
T ss_pred -ccEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEcC
Confidence 5566677776666 355566665554555555555
No 18
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=93.69 E-value=0.93 Score=44.83 Aligned_cols=193 Identities=19% Similarity=0.238 Sum_probs=90.0
Q ss_pred CcHHHHHHHHHcCCceEecCCcccceeeeecCCCCCCCCCCcCCCCCCCCccccccchhhHHHHHHHHhhcCCEEEEEee
Q 013838 74 SHPLLANAIQAFQSLRIRIGGSLQDQVLYDVGDLKAPCHPFRKMKDGLFGFSKGCLHMQRWDELNQLFNRTRAIVSFGLN 153 (435)
Q Consensus 74 ~~~~l~~l~~~l~p~~LRiGG~~~D~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~d~f~~f~~~~g~~~i~~lN 153 (435)
+-..++++.|..+...+|+ |++.. +.+..|+ .+|+++++++.
T Consensus 14 ~p~~vv~l~ks~~i~~vri---------~d~~~----------------------------~iL~a~a-~S~i~v~v~vp 55 (310)
T PF00332_consen 14 SPCKVVSLLKSNGITKVRI---------YDADP----------------------------SILRAFA-GSGIEVMVGVP 55 (310)
T ss_dssp -HHHHHHHHHHTT--EEEE---------SS--H----------------------------HHHHHHT-TS--EEEEEE-
T ss_pred CHHHHHHHHHhcccccEEe---------ecCcH----------------------------HHHHHHh-cCCceeeeccC
Confidence 5677889999988877774 43210 3333344 47999999886
Q ss_pred cCCCCcccCCCCCCCCCChHHHHHHHHHHHh---cCCccceeeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcC
Q 013838 154 ALHGRHNIRHNAWGGAWDSNNARDFLKYTIS---MGYQIDSWEYGNELSGRTSIGASVDAELYGKDLINLKNIINELYKN 230 (435)
Q Consensus 154 ~~~~~~~~~~~~~~~~w~~~~A~~~l~y~~~---~g~~v~~wElGNEpd~~~~~~~~~t~~~Ya~d~~~~~~~i~~~~p~ 230 (435)
-.. +.. .+=....|..|++--.. ..-++.+..+|||.-.. ........--+.+++++++.-
T Consensus 56 N~~----l~~----la~~~~~A~~Wv~~nv~~~~~~~~i~~i~VGnEv~~~------~~~~~lvpAm~ni~~aL~~~~-- 119 (310)
T PF00332_consen 56 NED----LAS----LASSQSAAGSWVRTNVLPYLPAVNIRYIAVGNEVLTG------TDNAYLVPAMQNIHNALTAAG-- 119 (310)
T ss_dssp GGG----HHH----HHHHHHHHHHHHHHHTCTCTTTSEEEEEEEEES-TCC------SGGGGHHHHHHHHHHHHHHTT--
T ss_pred hHH----HHH----hccCHHHHhhhhhhcccccCcccceeeeecccccccC------ccceeeccHHHHHHHHHHhcC--
Confidence 110 000 00023456667663221 12358999999997754 111145666677788887652
Q ss_pred CCCCCeEECC------------C-CCCCHHH------HHHHHhhhCCCccceEEEeeeCC-----CCCCCh---hhh---
Q 013838 231 SSSKPTILAP------------G-GFFDQEW------YAKFLQVSGSNVVNGVTHHIYNL-----GPGVDP---NLV--- 280 (435)
Q Consensus 231 ~~~~~~~~gp------------~-~~~~~~~------~~~fl~~~~~~~id~vs~H~Y~~-----~~g~~~---~~~--- 280 (435)
...++++..| + +.+..++ +.+||+..+. .+.+.-||+ ++..-+ ++.
T Consensus 120 L~~~IkVst~~~~~vl~~s~PPS~g~F~~~~~~~~~~~l~fL~~t~s----pf~vN~yPyfa~~~~~~~~~l~yAlf~~~ 195 (310)
T PF00332_consen 120 LSDQIKVSTPHSMDVLSNSFPPSAGVFRSDIASVMDPLLKFLDGTNS----PFMVNVYPYFAYQNNPQNISLDYALFQPN 195 (310)
T ss_dssp -TTTSEEEEEEEGGGEEE-SSGGG-EESHHHHHHHHHHHHHHHHHT------EEEE--HHHHHHHSTTTS-HHHHTT-SS
T ss_pred cCCcceeccccccccccccCCCccCcccccchhhhhHHHHHhhccCC----CceeccchhhhccCCcccCCccccccccc
Confidence 1124566532 2 1223333 3567777653 233333431 111000 000
Q ss_pred hhccCh--hhhhhHHHHHHHHHHHHHHhC-CCCceEEcccccCcCCC
Q 013838 281 SKILNP--QRLSRVSETFGNLKQTIEKHG-PWASAWVGESGGAYNSG 324 (435)
Q Consensus 281 ~~ll~~--~~l~~~~~~~~~~~~~~~~~~-~~~p~wl~Etns~~~~G 324 (435)
....++ .+-.-+..+++.+...+.+.+ +++++|+||||-.+.|+
T Consensus 196 ~~~~D~~~~y~nlfDa~~da~~~a~~~~g~~~~~vvv~ETGWPs~G~ 242 (310)
T PF00332_consen 196 SGVVDGGLAYTNLFDAMVDAVYAAMEKLGFPNVPVVVGETGWPSAGD 242 (310)
T ss_dssp S-SEETTEEESSHHHHHHHHHHHHHHTTT-TT--EEEEEE---SSSS
T ss_pred ccccccchhhhHHHHHHHHHHHHHHHHhCCCCceeEEeccccccCCC
Confidence 000011 111223455677777776554 57899999999777544
No 19
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=91.63 E-value=1.8 Score=42.26 Aligned_cols=82 Identities=18% Similarity=0.219 Sum_probs=42.5
Q ss_pred HHHHHHHhhcCCEEEEEeecC-CCCcccCC----CCCCCCCCh---HHHHHHHHHHHhcCCccceeeeeccCCCCCCCCC
Q 013838 135 DELNQLFNRTRAIVSFGLNAL-HGRHNIRH----NAWGGAWDS---NNARDFLKYTISMGYQIDSWEYGNELSGRTSIGA 206 (435)
Q Consensus 135 d~f~~f~~~~g~~~i~~lN~~-~~~~~~~~----~~~~~~w~~---~~A~~~l~y~~~~g~~v~~wElGNEpd~~~~~~~ 206 (435)
+.|+++|.+.|.-++--+... .+...... ...+..|.. ++.+++++..+. .-.|..|.+|||+
T Consensus 62 ~~~~~~cD~~GilV~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~N-HPSIi~W~~gNE~-------- 132 (298)
T PF02836_consen 62 PRFYDLCDELGILVWQEIPLEGHGSWQDFGNCNYDADDPEFRENAEQELREMVRRDRN-HPSIIMWSLGNES-------- 132 (298)
T ss_dssp HHHHHHHHHHT-EEEEE-S-BSCTSSSSTSCTSCTTTSGGHHHHHHHHHHHHHHHHTT--TTEEEEEEEESS--------
T ss_pred HHHHHHHhhcCCEEEEeccccccCccccCCccccCCCCHHHHHHHHHHHHHHHHcCcC-cCchheeecCccC--------
Confidence 689999999999888776551 11000000 000011111 123333332222 2337799999997
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhcC
Q 013838 207 SVDAELYGKDLINLKNIINELYKN 230 (435)
Q Consensus 207 ~~t~~~Ya~d~~~~~~~i~~~~p~ 230 (435)
.+...+.++.+.+++.+|+
T Consensus 133 -----~~~~~~~~l~~~~k~~Dpt 151 (298)
T PF02836_consen 133 -----DYREFLKELYDLVKKLDPT 151 (298)
T ss_dssp -----HHHHHHHHHHHHHHHH-TT
T ss_pred -----ccccchhHHHHHHHhcCCC
Confidence 3445566778888888886
No 20
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=91.20 E-value=4.9 Score=38.48 Aligned_cols=76 Identities=13% Similarity=0.068 Sum_probs=46.7
Q ss_pred HHHHHhhcCCEEEEEeecCCCCcccCCCCCCCCCChHHHHHHHHHHHhcC-CccceeeeeccCCCCCCCCCCCCHHHHHH
Q 013838 137 LNQLFNRTRAIVSFGLNALHGRHNIRHNAWGGAWDSNNARDFLKYTISMG-YQIDSWEYGNELSGRTSIGASVDAELYGK 215 (435)
Q Consensus 137 f~~f~~~~g~~~i~~lN~~~~~~~~~~~~~~~~w~~~~A~~~l~y~~~~g-~~v~~wElGNEpd~~~~~~~~~t~~~Ya~ 215 (435)
+..-+.+.|.++++|+=.... ...+.+. ..+..|-...+ ..|..+-+|||-=.. ...+++|..+
T Consensus 92 v~pAa~~~g~kv~lGiw~tdd----------~~~~~~~-til~ay~~~~~~d~v~~v~VGnEal~r----~~~tasql~~ 156 (305)
T COG5309 92 VLPAAEASGFKVFLGIWPTDD----------IHDAVEK-TILSAYLPYNGWDDVTTVTVGNEALNR----NDLTASQLIE 156 (305)
T ss_pred hHHHHHhcCceEEEEEeeccc----------hhhhHHH-HHHHHHhccCCCCceEEEEechhhhhc----CCCCHHHHHH
Confidence 333456678888888754221 1112221 11223322233 348899999996432 4678999999
Q ss_pred HHHHHHHHHHHh
Q 013838 216 DLINLKNIINEL 227 (435)
Q Consensus 216 d~~~~~~~i~~~ 227 (435)
...+.|.++++.
T Consensus 157 ~I~~vrsav~~a 168 (305)
T COG5309 157 YIDDVRSAVKEA 168 (305)
T ss_pred HHHHHHHHHHhc
Confidence 999999999865
No 21
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=85.19 E-value=29 Score=34.17 Aligned_cols=128 Identities=16% Similarity=0.212 Sum_probs=55.3
Q ss_pred HHHHHHHhhcCCEEEEEeecCCCCcccCCCCCCCCCChHHHHHHHHHHHh-cC-CccceeeeeccCCCCCCCCCCCCHHH
Q 013838 135 DELNQLFNRTRAIVSFGLNALHGRHNIRHNAWGGAWDSNNARDFLKYTIS-MG-YQIDSWEYGNELSGRTSIGASVDAEL 212 (435)
Q Consensus 135 d~f~~f~~~~g~~~i~~lN~~~~~~~~~~~~~~~~w~~~~A~~~l~y~~~-~g-~~v~~wElGNEpd~~~~~~~~~t~~~ 212 (435)
|+.|+...++|.=+|+.||..... +...++...|+..--....+.... .+ .++.+|=+|||.-.-. .+..+..
T Consensus 82 d~CM~~~~~aGIYvi~Dl~~p~~s--I~r~~P~~sw~~~l~~~~~~vid~fa~Y~N~LgFf~GNEVin~~---~~t~aap 156 (314)
T PF03198_consen 82 DECMSAFADAGIYVILDLNTPNGS--INRSDPAPSWNTDLLDRYFAVIDAFAKYDNTLGFFAGNEVINDA---SNTNAAP 156 (314)
T ss_dssp HHHHHHHHHTT-EEEEES-BTTBS----TTS------HHHHHHHHHHHHHHTT-TTEEEEEEEESSS-ST---T-GGGHH
T ss_pred HHHHHHHHhCCCEEEEecCCCCcc--ccCCCCcCCCCHHHHHHHHHHHHHhccCCceEEEEecceeecCC---CCcccHH
Confidence 899999999999999999875332 322233347765443332222221 23 4577999999986531 1233444
Q ss_pred HHHH-HHHHHHHHHHhhcCCCCCCeEECCCCCCC---HHHHHHHHhhhC-CCccceEEEeeeCC
Q 013838 213 YGKD-LINLKNIINELYKNSSSKPTILAPGGFFD---QEWYAKFLQVSG-SNVVNGVTHHIYNL 271 (435)
Q Consensus 213 Ya~d-~~~~~~~i~~~~p~~~~~~~~~gp~~~~~---~~~~~~fl~~~~-~~~id~vs~H~Y~~ 271 (435)
|.+. .|..++.|++. ..+..-+|-+.+.. ..-+.++|.=.. ...+|++.+-.|.+
T Consensus 157 ~vKAavRD~K~Yi~~~----~~R~IPVGYsaaD~~~~r~~~a~Yl~Cg~~~~~iDf~g~N~Y~W 216 (314)
T PF03198_consen 157 YVKAAVRDMKAYIKSK----GYRSIPVGYSAADDAEIRQDLANYLNCGDDDERIDFFGLNSYEW 216 (314)
T ss_dssp HHHHHHHHHHHHHHHS----SS----EEEEE---TTTHHHHHHHTTBTT-----S-EEEEE---
T ss_pred HHHHHHHHHHHHHHhc----CCCCCceeEEccCChhHHHHHHHHhcCCCcccccceeeecccee
Confidence 5433 22233334332 11223344333322 123455564221 12599999999975
No 22
>TIGR03356 BGL beta-galactosidase.
Probab=76.94 E-value=6.3 Score=40.82 Aligned_cols=100 Identities=14% Similarity=0.131 Sum_probs=64.7
Q ss_pred HHHHHHHHcCCceEecCCcccceeeeecCCCCCCCCCCcCCCCCCCCccccccc---hhhHHHHHHHHhhcCCEEEEEee
Q 013838 77 LLANAIQAFQSLRIRIGGSLQDQVLYDVGDLKAPCHPFRKMKDGLFGFSKGCLH---MQRWDELNQLFNRTRAIVSFGLN 153 (435)
Q Consensus 77 ~l~~l~~~l~p~~LRiGG~~~D~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~---~~~~d~f~~f~~~~g~~~i~~lN 153 (435)
.=+.+++.+|-..+|++=.++- ..|.. . ..+. -...+++++-+++.|.+||++|.
T Consensus 58 eDi~l~~~~G~~~~R~si~Wsr---i~p~g---~----------------~~~n~~~~~~y~~~i~~l~~~gi~pivtL~ 115 (427)
T TIGR03356 58 EDVALMKELGVDAYRFSIAWPR---IFPEG---T----------------GPVNPKGLDFYDRLVDELLEAGIEPFVTLY 115 (427)
T ss_pred HHHHHHHHcCCCeEEcccchhh---cccCC---C----------------CCcCHHHHHHHHHHHHHHHHcCCeeEEeec
Confidence 3457888999999998765432 11110 0 0111 24568999999999999999995
Q ss_pred cCCCCcccCCCCCCCCC-ChHHHHHHHHHHH----hcCCccceeeeeccCCCC
Q 013838 154 ALHGRHNIRHNAWGGAW-DSNNARDFLKYTI----SMGYQIDSWEYGNELSGR 201 (435)
Q Consensus 154 ~~~~~~~~~~~~~~~~w-~~~~A~~~l~y~~----~~g~~v~~wElGNEpd~~ 201 (435)
=-.-+.... ..+.| +++....+++||+ ..+..|++|+.=|||+..
T Consensus 116 Hfd~P~~l~---~~gGw~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~~ 165 (427)
T TIGR03356 116 HWDLPQALE---DRGGWLNRDTAEWFAEYAAVVAERLGDRVKHWITLNEPWCS 165 (427)
T ss_pred cCCccHHHH---hcCCCCChHHHHHHHHHHHHHHHHhCCcCCEEEEecCccee
Confidence 221111000 02456 4456777888864 467789999999999965
No 23
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=69.99 E-value=33 Score=34.63 Aligned_cols=56 Identities=16% Similarity=0.180 Sum_probs=33.6
Q ss_pred HHHHHHHcCCceEecCCcccceeeeecCCCCCCCCCCcCCCCCCCCccccccchhhHHHHHHHHhhcCCEEEEEeecC
Q 013838 78 LANAIQAFQSLRIRIGGSLQDQVLYDVGDLKAPCHPFRKMKDGLFGFSKGCLHMQRWDELNQLFNRTRAIVSFGLNAL 155 (435)
Q Consensus 78 l~~l~~~l~p~~LRiGG~~~D~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~d~f~~f~~~~g~~~i~~lN~~ 155 (435)
-+.++|++|--++|+|=- .|.. .+| +. +.+.-+.+|.+++.+++.|.++|+++.-.
T Consensus 15 d~~~m~~~G~n~vri~~~-----~W~~------lEP----~e-------G~ydF~~lD~~l~~a~~~Gi~viL~~~~~ 70 (374)
T PF02449_consen 15 DLRLMKEAGFNTVRIGEF-----SWSW------LEP----EE-------GQYDFSWLDRVLDLAAKHGIKVILGTPTA 70 (374)
T ss_dssp HHHHHHHHT-SEEEE-CC-----EHHH------H-S----BT-------TB---HHHHHHHHHHHCTT-EEEEEECTT
T ss_pred HHHHHHHcCCCEEEEEEe-----chhh------ccC----CC-------CeeecHHHHHHHHHHHhccCeEEEEeccc
Confidence 346778889999998643 2321 011 11 23344668999999999999999988643
No 24
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=67.53 E-value=25 Score=35.51 Aligned_cols=107 Identities=15% Similarity=0.090 Sum_probs=41.3
Q ss_pred ccceEEEeeeCCCCCCChhhhhhccChhhhhhHHHHHHHHHHHHHHhCCCCceEEcccccCcCC-CCC--CcchHHHHHH
Q 013838 260 VVNGVTHHIYNLGPGVDPNLVSKILNPQRLSRVSETFGNLKQTIEKHGPWASAWVGESGGAYNS-GGR--HVSNTFVNSF 336 (435)
Q Consensus 260 ~id~vs~H~Y~~~~g~~~~~~~~ll~~~~l~~~~~~~~~~~~~~~~~~~~~p~wl~Etns~~~~-G~~--~vsdtf~aaL 336 (435)
.+|.++++.|+.+...... . .+..+ .-...+++....++|+|+.|+.+...+ +.. ...... -.+
T Consensus 251 ~~D~~~~d~Y~~~~~~~~~--~---~~~~~-------a~~~dl~R~~~~~kpf~v~E~~~g~~~~~~~~~~~~pg~-~~~ 317 (374)
T PF02449_consen 251 YLDVVSWDSYPDGSFDFYD--D---DPYSL-------AFNHDLMRSLAKGKPFWVMEQQPGPVNWRPYNRPPRPGE-LRL 317 (374)
T ss_dssp GSSSEEEEE-HHHHHTTTT-------TTHH-------HHHHHHHHHHTTT--EEEEEE--S--SSSSS-----TTH-HHH
T ss_pred hCCcceeccccCcccCCCC--C---CHHHH-------HHHHHHHHhhcCCCceEeecCCCCCCCCccCCCCCCCCH-HHH
Confidence 5899999999851000000 0 11111 111222333356799999999764221 111 111111 234
Q ss_pred HHHHHhhhhhccCCeEE-E---eeeccC---cccccccCCCCCCCcchHHHHHH
Q 013838 337 WYLDQLGMSSKYNTKVY-C---RQTLVG---GNYGLLNATTFIPNPDYYSALLW 383 (435)
Q Consensus 337 w~lD~l~~~A~~g~~~v-~---~q~l~g---~~Y~l~~~~~~~p~P~Yy~~ll~ 383 (435)
|..-.+ ..|.+.+ + |+...| ..+++++.+...+++.|.-..=.
T Consensus 318 ~~~~~~----A~Ga~~i~~~~wr~~~~g~E~~~~g~~~~dg~~~~~~~~e~~~~ 367 (374)
T PF02449_consen 318 WSWQAI----AHGADGILFWQWRQSRFGAEQFHGGLVDHDGREPTRRYREVAQL 367 (374)
T ss_dssp HHHHHH----HTT-S-EEEC-SB--SSSTTTTS--SB-TTS--B-HHHHHHHHH
T ss_pred HHHHHH----HHhCCeeEeeeccCCCCCchhhhcccCCccCCCCCcHHHHHHHH
Confidence 433333 3455433 2 445555 45689988844777777655433
No 25
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=67.06 E-value=66 Score=28.64 Aligned_cols=91 Identities=13% Similarity=0.226 Sum_probs=54.9
Q ss_pred hhHHHHHHHHhhcCCEEEEEeecCCCCcccCCCCCC---CCCChHHHHHHHHHHH-h--cCCccceeeeeccCCCCCCCC
Q 013838 132 QRWDELNQLFNRTRAIVSFGLNALHGRHNIRHNAWG---GAWDSNNARDFLKYTI-S--MGYQIDSWEYGNELSGRTSIG 205 (435)
Q Consensus 132 ~~~d~f~~f~~~~g~~~i~~lN~~~~~~~~~~~~~~---~~w~~~~A~~~l~y~~-~--~g~~v~~wElGNEpd~~~~~~ 205 (435)
...+.+++.|++.|.++++||++... ++. .+|..+....+++... . +...+++|=|=+|++.+
T Consensus 65 d~l~~~L~~A~~~Gmkv~~Gl~~~~~-------~w~~~~~~~~~~~~~~v~~el~~~yg~h~sf~GWYip~E~~~~---- 133 (166)
T PF14488_consen 65 DLLEMILDAADKYGMKVFVGLYFDPD-------YWDQGDLDWEAERNKQVADELWQRYGHHPSFYGWYIPYEIDDY---- 133 (166)
T ss_pred cHHHHHHHHHHHcCCEEEEeCCCCch-------hhhccCHHHHHHHHHHHHHHHHHHHcCCCCCceEEEecccCCc----
Confidence 34589999999999999999987421 111 1121111122222211 1 12259999999999976
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhhcCCCCCCeEECC
Q 013838 206 ASVDAELYGKDLINLKNIINELYKNSSSKPTILAP 240 (435)
Q Consensus 206 ~~~t~~~Ya~d~~~~~~~i~~~~p~~~~~~~~~gp 240 (435)
++.. .+.++.+.+.++++.++ .|..+.|
T Consensus 134 -~~~~---~~~~~~l~~~lk~~s~~---~Pv~ISp 161 (166)
T PF14488_consen 134 -NWNA---PERFALLGKYLKQISPG---KPVMISP 161 (166)
T ss_pred -ccch---HHHHHHHHHHHHHhCCC---CCeEEec
Confidence 3333 44466777778877553 4555555
No 26
>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 59 GH59 from CAZY comprises enzymes with only one known activity; galactocerebrosidase (3.2.1.46 from EC). Globoid cell leukodystrophy (Krabbe disease) is a severe, autosomal recessive disorder that results from deficiency of galactocerebrosidase (GALC) activity [, , ]. GALC is responsible for the lysosomal catabolism of certain galactolipids, including galactosylceramide and psychosine [].; GO: 0004336 galactosylceramidase activity, 0006683 galactosylceramide catabolic process; PDB: 3ZR6_A 3ZR5_A.
Probab=60.71 E-value=53 Score=35.82 Aligned_cols=154 Identities=18% Similarity=0.154 Sum_probs=65.5
Q ss_pred HhcCCccceeeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCeEECCCCCCCHHHHHHHHhh-hCCCcc
Q 013838 183 ISMGYQIDSWEYGNELSGRTSIGASVDAELYGKDLINLKNIINELYKNSSSKPTILAPGGFFDQEWYAKFLQV-SGSNVV 261 (435)
Q Consensus 183 ~~~g~~v~~wElGNEpd~~~~~~~~~t~~~Ya~d~~~~~~~i~~~~p~~~~~~~~~gp~~~~~~~~~~~fl~~-~~~~~i 261 (435)
+.+|..|.|..+.||=. ++ .+|. +.+|+.+++.. -.++||++.+.... .+...++.. .-...|
T Consensus 168 ~~~gl~idYvg~~NEr~--------~~-~~~i---k~lr~~l~~~g---y~~vkiva~D~~~~-~~~~~m~~D~~l~~av 231 (669)
T PF02057_consen 168 KTHGLDIDYVGIWNERG--------FD-VNYI---KWLRKALNSNG---YNKVKIVAADNNWE-SISDDMLSDPELRNAV 231 (669)
T ss_dssp HHH-----EE-S-TTS------------HHHH---HHHHHHHHHTT----TT-EEEEEEE-ST-THHHHHHH-HHHHHH-
T ss_pred HHhCCCceEechhhccC--------CC-hhHH---HHHHHHHhhcc---ccceEEEEeCCCcc-chhhhhhcCHHHHhcc
Confidence 45789999999999943 22 4564 45677776641 14579999875532 233333221 111148
Q ss_pred ceEEEeeeCCCCCCChhhhhhccChhhhhhHHHHHHHHHHHHHHhCCCCceEEcccccCcCCCCCCcchHHHHHHHHHHH
Q 013838 262 NGVTHHIYNLGPGVDPNLVSKILNPQRLSRVSETFGNLKQTIEKHGPWASAWVGESGGAYNSGGRHVSNTFVNSFWYLDQ 341 (435)
Q Consensus 262 d~vs~H~Y~~~~g~~~~~~~~ll~~~~l~~~~~~~~~~~~~~~~~~~~~p~wl~Etns~~~~G~~~vsdtf~aaLw~lD~ 341 (435)
|.+..| |+.. +.. .. .+.. +||+|-+|-.|..+ +..+++-| +..
T Consensus 232 dvig~H-Y~~~---~~~---------------~~-------a~~~--~K~lW~SE~~s~~~-------~~~g~g~~-ar~ 275 (669)
T PF02057_consen 232 DVIGYH-YPGT---YSS---------------KN-------AKLT--GKPLWSSEDYSTFN-------YNVGAGCW-ARI 275 (669)
T ss_dssp -EEEEE-S-TT---------------------HH-------HHHH--T-EEEEEEEE-S-T-------THHHHHHH-HHH
T ss_pred cEeccc-cCCC---CcH---------------HH-------HHHh--CCCeEEcCCccccc-------CcCchHHH-HHH
Confidence 999999 4421 110 00 0112 59999999766442 22233333 222
Q ss_pred hhh-hhccCCeEEEeeeccCcccccccCC---------C----CCCCcchHHHHHHHHhcC
Q 013838 342 LGM-SSKYNTKVYCRQTLVGGNYGLLNAT---------T----FIPNPDYYSALLWHRLMG 388 (435)
Q Consensus 342 l~~-~A~~g~~~v~~q~l~g~~Y~l~~~~---------~----~~p~P~Yy~~ll~~~~~G 388 (435)
|-. ..+-....++-|.+|++.|.-+... + ....+..|++.=+.++.-
T Consensus 276 ln~~yv~g~mT~~I~w~lVasyYp~lpy~~~gL~~A~ePWSG~Y~v~~~iWv~AHtTQFt~ 336 (669)
T PF02057_consen 276 LNRNYVNGRMTAYINWPLVASYYPGLPYSRKGLMTANEPWSGHYEVDSPIWVTAHTTQFTQ 336 (669)
T ss_dssp HHHHHHHH--SEEEEE-SEE-S-TTSTTTT-SSCE---TTT---B--HHHHHHHHHHTT--
T ss_pred HHhhhhccceEEEEeehhhhhhcCCCCCCCccceEecCCcccceEecceeeeeeehhccCC
Confidence 211 2223344567889998777332221 1 234667888877777753
No 27
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=59.13 E-value=13 Score=36.56 Aligned_cols=101 Identities=20% Similarity=0.169 Sum_probs=58.9
Q ss_pred CCcHHHHHHHHHcCCceEecCCcccceeeeecCCCCCCCCCCcCCCCCCCCcccc--ccchhhHHHHHHHHhhcCCEEEE
Q 013838 73 LSHPLLANAIQAFQSLRIRIGGSLQDQVLYDVGDLKAPCHPFRKMKDGLFGFSKG--CLHMQRWDELNQLFNRTRAIVSF 150 (435)
Q Consensus 73 ~~~~~l~~l~~~l~p~~LRiGG~~~D~~~~~~~~~~~~~~p~~~~~~~~~g~~~~--~~~~~~~d~f~~f~~~~g~~~i~ 150 (435)
-..+...+.+|.+|-.+.|+||. |++- ..... ..-+.++-.+.|+..+. +.+..+=+++++.-++ |.-|++
T Consensus 87 AVs~~yE~~Lks~GitV~RigG~--nR~E--Ta~~v--~~~~~~~yp~af~n~kvvvv~GwDy~~~~~e~~k~-~~~p~~ 159 (337)
T COG2247 87 AVSPNYENALKSLGITVKRIGGA--NRYE--TAEKV--AKFFREDYPNAFKNVKVVVVYGWDYADALMELMKE-GIVPVI 159 (337)
T ss_pred cCChhHHHHHHhCCcEEEEecCc--chHH--HHHHH--HHHHHhhchhhhcCeEEEEEeccccHHHHHHHHhc-CcceeE
Confidence 34788899999999999999998 5432 11000 00011111112221122 3344444689999998 987777
Q ss_pred EeecCCCCcccCCCCCCCCCChHHHHHHHHHHHhcCCccc
Q 013838 151 GLNALHGRHNIRHNAWGGAWDSNNARDFLKYTISMGYQID 190 (435)
Q Consensus 151 ~lN~~~~~~~~~~~~~~~~w~~~~A~~~l~y~~~~g~~v~ 190 (435)
--|-.. .-.|...-+....+|+...++.++
T Consensus 160 ~~n~~~----------~~~~~~~~~l~~s~~a~~~~~pi~ 189 (337)
T COG2247 160 LKNTSI----------LVRWSRKLALAESPYAANIGCPIL 189 (337)
T ss_pred eccccc----------ccccccceeeeecHhHHhcCCccc
Confidence 444211 123554556667788888888886
No 28
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=56.81 E-value=24 Score=37.12 Aligned_cols=103 Identities=10% Similarity=0.036 Sum_probs=65.6
Q ss_pred HHHHHHcCCceEecCCcccceeeeecCCCCCCCCCCcCCCCCCCCccccccchhhHHHHHHHHhhcCCEEEEEeecCCCC
Q 013838 79 ANAIQAFQSLRIRIGGSLQDQVLYDVGDLKAPCHPFRKMKDGLFGFSKGCLHMQRWDELNQLFNRTRAIVSFGLNALHGR 158 (435)
Q Consensus 79 ~~l~~~l~p~~LRiGG~~~D~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~d~f~~f~~~~g~~~i~~lN~~~~~ 158 (435)
+.|++.||-...|++=+++- .-|..... .+ +. =.-...+.+++-+++.|.+||++|+--..+
T Consensus 77 i~l~~~lG~~~yR~si~WsR---i~P~g~~~--~~------n~-------~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P 138 (474)
T PRK09852 77 IALMAEMGFKVFRTSIAWSR---LFPQGDEL--TP------NQ-------QGIAFYRSVFEECKKYGIEPLVTLCHFDVP 138 (474)
T ss_pred HHHHHHcCCCeEEeeceeee---eeeCCCCC--CC------CH-------HHHHHHHHHHHHHHHcCCEEEEEeeCCCCC
Confidence 46889999988888766432 22221000 00 00 012446889999999999999999853322
Q ss_pred cccCCCCCCCCCCh-HHHHHHHHHHH----hcCCccceeeeeccCCCC
Q 013838 159 HNIRHNAWGGAWDS-NNARDFLKYTI----SMGYQIDSWEYGNELSGR 201 (435)
Q Consensus 159 ~~~~~~~~~~~w~~-~~A~~~l~y~~----~~g~~v~~wElGNEpd~~ 201 (435)
.... +.-+.|.. +.+..+++||. ..|..|++|--=|||+.+
T Consensus 139 ~~l~--~~~GGW~~~~~~~~F~~ya~~~~~~fgd~Vk~WiTfNEPn~~ 184 (474)
T PRK09852 139 MHLV--TEYGSWRNRKMVEFFSRYARTCFEAFDGLVKYWLTFNEINIM 184 (474)
T ss_pred HHHH--HhcCCCCCHHHHHHHHHHHHHHHHHhcCcCCeEEeecchhhh
Confidence 1110 01266755 45667777764 578999999999999854
No 29
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=55.70 E-value=28 Score=36.63 Aligned_cols=99 Identities=9% Similarity=0.086 Sum_probs=63.3
Q ss_pred HHHHHHcCCceEecCCcccceeeeecCCCCCCCCCCcCCCCCCCCccccccch---hhHHHHHHHHhhcCCEEEEEeecC
Q 013838 79 ANAIQAFQSLRIRIGGSLQDQVLYDVGDLKAPCHPFRKMKDGLFGFSKGCLHM---QRWDELNQLFNRTRAIVSFGLNAL 155 (435)
Q Consensus 79 ~~l~~~l~p~~LRiGG~~~D~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~---~~~d~f~~f~~~~g~~~i~~lN~~ 155 (435)
+.|++.||--..|++=.++= .-|.... ..+.+ ...+.+++-+++.|.+|+++|.=-
T Consensus 75 I~Lm~elG~~~yRfSIsWsR---I~P~G~~------------------~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~ 133 (477)
T PRK15014 75 IKLFAEMGFKCFRTSIAWTR---IFPKGDE------------------AQPNEEGLKFYDDMFDELLKYNIEPVITLSHF 133 (477)
T ss_pred HHHHHHcCCCEEEeccccee---eccCCCC------------------CCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCC
Confidence 47889999888887655332 1111000 01122 345888889999999999999622
Q ss_pred CCCcccCCCCCCCCC-ChHHHHHHHHHHH----hcCCccceeeeeccCCC
Q 013838 156 HGRHNIRHNAWGGAW-DSNNARDFLKYTI----SMGYQIDSWEYGNELSG 200 (435)
Q Consensus 156 ~~~~~~~~~~~~~~w-~~~~A~~~l~y~~----~~g~~v~~wElGNEpd~ 200 (435)
..+...-+ .-+.| +++.+..+++||. ..+.+|++|--=|||+.
T Consensus 134 dlP~~L~~--~yGGW~n~~~~~~F~~Ya~~~f~~fgdrVk~WiT~NEp~~ 181 (477)
T PRK15014 134 EMPLHLVQ--QYGSWTNRKVVDFFVRFAEVVFERYKHKVKYWMTFNEINN 181 (477)
T ss_pred CCCHHHHH--hcCCCCChHHHHHHHHHHHHHHHHhcCcCCEEEEecCccc
Confidence 21110100 01668 5566778888873 57889999999999984
No 30
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=54.71 E-value=43 Score=37.59 Aligned_cols=60 Identities=15% Similarity=0.205 Sum_probs=35.2
Q ss_pred HHHHHHHhhcCCEEEEEeecCCCCcccCCCCCCCCCChHHHHHHHHHHH---hcCCccceeeeeccCCC
Q 013838 135 DELNQLFNRTRAIVSFGLNALHGRHNIRHNAWGGAWDSNNARDFLKYTI---SMGYQIDSWEYGNELSG 200 (435)
Q Consensus 135 d~f~~f~~~~g~~~i~~lN~~~~~~~~~~~~~~~~w~~~~A~~~l~y~~---~~g~~v~~wElGNEpd~ 200 (435)
++|.++|.+.|.=+|=-.++..-. .++ +..| .+++.+-+++.. +..-.|--|.+|||+..
T Consensus 347 ~~~ydLcDelGllV~~Ea~~~~~~--~~~---~~~~-~k~~~~~i~~mver~knHPSIiiWs~gNE~~~ 409 (808)
T COG3250 347 EEFYDLCDELGLLVIDEAMIETHG--MPD---DPEW-RKEVSEEVRRMVERDRNHPSIIIWSLGNESGH 409 (808)
T ss_pred HHHHHHHHHhCcEEEEecchhhcC--CCC---Ccch-hHHHHHHHHHHHHhccCCCcEEEEeccccccC
Confidence 789999999999888776663211 111 1233 233333333321 12234669999999764
No 31
>KOG4701 consensus Chitinase [Cell wall/membrane/envelope biogenesis]
Probab=53.29 E-value=2.6e+02 Score=28.41 Aligned_cols=42 Identities=14% Similarity=0.207 Sum_probs=28.3
Q ss_pred hHHHHHHHHhhcCCEEEEEeecCCCCcccCCCCCCCCCChHHHHHHHHHH
Q 013838 133 RWDELNQLFNRTRAIVSFGLNALHGRHNIRHNAWGGAWDSNNARDFLKYT 182 (435)
Q Consensus 133 ~~d~f~~f~~~~g~~~i~~lN~~~~~~~~~~~~~~~~w~~~~A~~~l~y~ 182 (435)
++.+=++-|+..|.++++.|--+.|.+... +.++|..++.|.
T Consensus 91 qi~~di~~CQS~GiKVlLSLGG~~GnYs~~--------~d~dA~~fA~~L 132 (568)
T KOG4701|consen 91 QIETDIQVCQSNGIKVLLSLGGYNGNYSLN--------NDDDATNFAFQL 132 (568)
T ss_pred hhhhHHHHHHhcCeEEEEeccCcccceeec--------cchhHHHHHHHH
Confidence 345567789999999999986655544333 335666666653
No 32
>PLN02849 beta-glucosidase
Probab=52.61 E-value=27 Score=37.07 Aligned_cols=68 Identities=18% Similarity=0.191 Sum_probs=47.5
Q ss_pred hhHHHHHHHHhhcCCEEEEEeecCCCCcccCCCCCCCCCC-hHHHHHHHHHHH----hcCCccceeeeeccCCCC
Q 013838 132 QRWDELNQLFNRTRAIVSFGLNALHGRHNIRHNAWGGAWD-SNNARDFLKYTI----SMGYQIDSWEYGNELSGR 201 (435)
Q Consensus 132 ~~~d~f~~f~~~~g~~~i~~lN~~~~~~~~~~~~~~~~w~-~~~A~~~l~y~~----~~g~~v~~wElGNEpd~~ 201 (435)
...+++.+-+.+.|.+|+++|.=-..+...-+ .-+.|. ++.+..+++||+ ..|.+|++|--=|||+.+
T Consensus 119 ~fY~~lid~l~~~GI~P~VTL~H~dlP~~L~~--~yGGW~nr~~v~~F~~YA~~~f~~fgDrVk~WiT~NEP~~~ 191 (503)
T PLN02849 119 QFYKNFIQELVKHGIEPHVTLFHYDHPQYLED--DYGGWINRRIIKDFTAYADVCFREFGNHVKFWTTINEANIF 191 (503)
T ss_pred HHHHHHHHHHHHcCCeEEEeecCCCCcHHHHH--hcCCcCCchHHHHHHHHHHHHHHHhcCcCCEEEEecchhhh
Confidence 34588888999999999999862211111100 016674 456778888864 578999999999999964
No 33
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=50.30 E-value=31 Score=36.21 Aligned_cols=66 Identities=15% Similarity=0.288 Sum_probs=47.3
Q ss_pred hhHHHHHHHHhhcCCEEEEEeecCCCCcccCCCCCCCCCC-hHHHHHHHHHHH----hcCCccceeeeeccCCCC
Q 013838 132 QRWDELNQLFNRTRAIVSFGLNALHGRHNIRHNAWGGAWD-SNNARDFLKYTI----SMGYQIDSWEYGNELSGR 201 (435)
Q Consensus 132 ~~~d~f~~f~~~~g~~~i~~lN~~~~~~~~~~~~~~~~w~-~~~A~~~l~y~~----~~g~~v~~wElGNEpd~~ 201 (435)
...+++++-+++.|.+|+++|.=-..+....+ .+.|. ++.+..+++||. ..|. |++|--=|||+.+
T Consensus 94 ~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~---~GGW~n~~~v~~F~~YA~~~~~~fgd-Vk~W~T~NEP~~~ 164 (469)
T PRK13511 94 EYYHRLFAECHKRHVEPFVTLHHFDTPEALHS---NGDWLNRENIDHFVRYAEFCFEEFPE-VKYWTTFNEIGPI 164 (469)
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCCCcHHHHH---cCCCCCHHHHHHHHHHHHHHHHHhCC-CCEEEEccchhhh
Confidence 44588899999999999999963222111111 36774 455777888864 5789 9999999999865
No 34
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=49.67 E-value=1.1e+02 Score=35.60 Aligned_cols=79 Identities=18% Similarity=0.121 Sum_probs=43.6
Q ss_pred HHHHHHHhhcCCEEEEEeecC-CCCc---ccCCCCCCCCCChHHHHHHHHHH-H-hcCC-ccceeeeeccCCCCCCCCCC
Q 013838 135 DELNQLFNRTRAIVSFGLNAL-HGRH---NIRHNAWGGAWDSNNARDFLKYT-I-SMGY-QIDSWEYGNELSGRTSIGAS 207 (435)
Q Consensus 135 d~f~~f~~~~g~~~i~~lN~~-~~~~---~~~~~~~~~~w~~~~A~~~l~y~-~-~~g~-~v~~wElGNEpd~~~~~~~~ 207 (435)
+.|+++|.+.|.=++=-+|+. .+-. ...+ +..|.... .+.++.. . .+++ .|..|.+|||+...
T Consensus 397 p~fydlcDe~GilV~dE~~~e~hg~~~~~~~~~---dp~~~~~~-~~~~~~mV~RdrNHPSIi~WSlgNE~~~g------ 466 (1027)
T PRK09525 397 PLWYELCDRYGLYVVDEANIETHGMVPMNRLSD---DPRWLPAM-SERVTRMVQRDRNHPSIIIWSLGNESGHG------ 466 (1027)
T ss_pred HHHHHHHHHcCCEEEEecCccccCCccccCCCC---CHHHHHHH-HHHHHHHHHhCCCCCEEEEEeCccCCCcC------
Confidence 689999999999777666652 1100 0000 11232221 1222222 1 1233 37799999997531
Q ss_pred CCHHHHHHHHHHHHHHHHHhhcC
Q 013838 208 VDAELYGKDLINLKNIINELYKN 230 (435)
Q Consensus 208 ~t~~~Ya~d~~~~~~~i~~~~p~ 230 (435)
..++++.+++|+.+|+
T Consensus 467 -------~~~~~l~~~~k~~Dpt 482 (1027)
T PRK09525 467 -------ANHDALYRWIKSNDPS 482 (1027)
T ss_pred -------hhHHHHHHHHHhhCCC
Confidence 1245677888888876
No 35
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=49.64 E-value=75 Score=36.87 Aligned_cols=81 Identities=15% Similarity=0.195 Sum_probs=43.7
Q ss_pred HHHHHHHhhcCCEEEEEeecCC-CCcccCC--C-CCCCCCCh---HHHHHHHHHHHhcCC-ccceeeeeccCCCCCCCCC
Q 013838 135 DELNQLFNRTRAIVSFGLNALH-GRHNIRH--N-AWGGAWDS---NNARDFLKYTISMGY-QIDSWEYGNELSGRTSIGA 206 (435)
Q Consensus 135 d~f~~f~~~~g~~~i~~lN~~~-~~~~~~~--~-~~~~~w~~---~~A~~~l~y~~~~g~-~v~~wElGNEpd~~~~~~~ 206 (435)
..|++.|.+.|.=++=-.|+.. +-....+ . .....|.. +++.++++. .+++ .|..|.+|||+..
T Consensus 381 ~~fydlcDe~GllV~dE~~~e~~g~~~~~~~~~~~~~p~~~~~~~~~~~~mV~R--drNHPSIi~WslGNE~~~------ 452 (1021)
T PRK10340 381 PRFYELCDIYGLFVMAETDVESHGFANVGDISRITDDPQWEKVYVDRIVRHIHA--QKNHPSIIIWSLGNESGY------ 452 (1021)
T ss_pred HHHHHHHHHCCCEEEECCcccccCcccccccccccCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECccCccc------
Confidence 6899999999997665555421 1000000 0 00111311 122233221 1222 3779999999742
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhcC
Q 013838 207 SVDAELYGKDLINLKNIINELYKN 230 (435)
Q Consensus 207 ~~t~~~Ya~d~~~~~~~i~~~~p~ 230 (435)
...++++.+++|+.+|+
T Consensus 453 -------g~~~~~~~~~~k~~Dpt 469 (1021)
T PRK10340 453 -------GCNIRAMYHAAKALDDT 469 (1021)
T ss_pred -------cHHHHHHHHHHHHhCCC
Confidence 12456788889998876
No 36
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=49.33 E-value=34 Score=35.96 Aligned_cols=68 Identities=15% Similarity=0.190 Sum_probs=47.4
Q ss_pred hhHHHHHHHHhhcCCEEEEEeecCCCCcccCCCCCCCCCC-hHHHHHHHHHHH----hcCCccceeeeeccCCCC
Q 013838 132 QRWDELNQLFNRTRAIVSFGLNALHGRHNIRHNAWGGAWD-SNNARDFLKYTI----SMGYQIDSWEYGNELSGR 201 (435)
Q Consensus 132 ~~~d~f~~f~~~~g~~~i~~lN~~~~~~~~~~~~~~~~w~-~~~A~~~l~y~~----~~g~~v~~wElGNEpd~~ 201 (435)
...+++++-+.+.|.+|+++|.=-..+....+ .-+.|. ++.+..+++||+ ..|.+|++|--=|||+..
T Consensus 108 ~~Y~~lid~L~~~GI~P~VTL~H~dlP~~L~~--~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk~WiT~NEp~~~ 180 (476)
T PRK09589 108 QFYDDLFDECLKQGIEPVVTLSHFEMPYHLVT--EYGGWRNRKLIDFFVRFAEVVFTRYKDKVKYWMTFNEINNQ 180 (476)
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCCCCHHHHH--hcCCcCChHHHHHHHHHHHHHHHHhcCCCCEEEEecchhhh
Confidence 34588888899999999999963221110100 016784 455778888864 578999999999999854
No 37
>PLN02814 beta-glucosidase
Probab=47.68 E-value=35 Score=36.14 Aligned_cols=68 Identities=15% Similarity=0.163 Sum_probs=47.1
Q ss_pred hhHHHHHHHHhhcCCEEEEEeecCCCCcccCCCCCCCCCCh-HHHHHHHHHHH----hcCCccceeeeeccCCCC
Q 013838 132 QRWDELNQLFNRTRAIVSFGLNALHGRHNIRHNAWGGAWDS-NNARDFLKYTI----SMGYQIDSWEYGNELSGR 201 (435)
Q Consensus 132 ~~~d~f~~f~~~~g~~~i~~lN~~~~~~~~~~~~~~~~w~~-~~A~~~l~y~~----~~g~~v~~wElGNEpd~~ 201 (435)
...+++.+-+++.|.+|+++|.=-..+....+ .-+.|.. +.+..+++||+ ..|.+|++|--=|||+.+
T Consensus 117 ~fY~~lId~l~~~GI~P~VTL~H~dlP~~L~~--~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk~WiT~NEP~~~ 189 (504)
T PLN02814 117 LFYKNLIKELRSHGIEPHVTLYHYDLPQSLED--EYGGWINRKIIEDFTAFADVCFREFGEDVKLWTTINEATIF 189 (504)
T ss_pred HHHHHHHHHHHHcCCceEEEecCCCCCHHHHH--hcCCcCChhHHHHHHHHHHHHHHHhCCcCCEEEeccccchh
Confidence 44588888899999999999862211110100 0156744 55677788864 579999999999999965
No 38
>PLN02998 beta-glucosidase
Probab=44.52 E-value=39 Score=35.77 Aligned_cols=68 Identities=19% Similarity=0.266 Sum_probs=47.1
Q ss_pred hhHHHHHHHHhhcCCEEEEEeecCCCCcccCCCCCCCCCC-hHHHHHHHHHHH----hcCCccceeeeeccCCCC
Q 013838 132 QRWDELNQLFNRTRAIVSFGLNALHGRHNIRHNAWGGAWD-SNNARDFLKYTI----SMGYQIDSWEYGNELSGR 201 (435)
Q Consensus 132 ~~~d~f~~f~~~~g~~~i~~lN~~~~~~~~~~~~~~~~w~-~~~A~~~l~y~~----~~g~~v~~wElGNEpd~~ 201 (435)
...+.+.+-+++.|.+|+++|.=-..+....+ .-+.|. ++.+..+++||+ ..|.+|++|--=|||+.+
T Consensus 122 ~~Y~~lid~L~~~GIeP~VTL~H~dlP~~L~~--~yGGW~n~~~v~~F~~YA~~~~~~fgdrVk~WiT~NEP~~~ 194 (497)
T PLN02998 122 QYYNNLIDELITHGIQPHVTLHHFDLPQALED--EYGGWLSQEIVRDFTAYADTCFKEFGDRVSHWTTINEVNVF 194 (497)
T ss_pred HHHHHHHHHHHHcCCceEEEecCCCCCHHHHH--hhCCcCCchHHHHHHHHHHHHHHHhcCcCCEEEEccCcchh
Confidence 34588888899999999999862211111100 015674 455677888864 579999999999999965
No 39
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=43.58 E-value=48 Score=34.81 Aligned_cols=97 Identities=13% Similarity=0.192 Sum_probs=61.6
Q ss_pred HHHHHHcCCceEecCCcccceeeeecCCCCCCCCCCcCCCCCCCCccccccc---hhhHHHHHHHHhhcCCEEEEEeecC
Q 013838 79 ANAIQAFQSLRIRIGGSLQDQVLYDVGDLKAPCHPFRKMKDGLFGFSKGCLH---MQRWDELNQLFNRTRAIVSFGLNAL 155 (435)
Q Consensus 79 ~~l~~~l~p~~LRiGG~~~D~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~---~~~~d~f~~f~~~~g~~~i~~lN~~ 155 (435)
+.|++.||....|++=.++= --|.. . ..+. =...+++.+-+++.|.+|+++|.=-
T Consensus 59 i~L~~~lG~~~yRfSIsWsR---I~P~g-~------------------~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~ 116 (467)
T TIGR01233 59 LELAEEYGVNGIRISIAWSR---IFPTG-Y------------------GEVNEKGVEFYHKLFAECHKRHVEPFVTLHHF 116 (467)
T ss_pred HHHHHHcCCCEEEEecchhh---ccCCC-C------------------CCcCHHHHHHHHHHHHHHHHcCCEEEEeccCC
Confidence 47889999888887655331 11110 0 0111 2345888888999999999998632
Q ss_pred CCCcccCCCCCCCCCCh-HHHHHHHHHHH----hcCCccceeeeeccCCCC
Q 013838 156 HGRHNIRHNAWGGAWDS-NNARDFLKYTI----SMGYQIDSWEYGNELSGR 201 (435)
Q Consensus 156 ~~~~~~~~~~~~~~w~~-~~A~~~l~y~~----~~g~~v~~wElGNEpd~~ 201 (435)
..+...-+ .+.|.. +.+..+++||+ ..|. |++|--=|||+.+
T Consensus 117 dlP~~L~~---~GGW~n~~~v~~F~~YA~~~f~~fgd-Vk~WiT~NEP~~~ 163 (467)
T TIGR01233 117 DTPEALHS---NGDFLNRENIEHFIDYAAFCFEEFPE-VNYWTTFNEIGPI 163 (467)
T ss_pred CCcHHHHH---cCCCCCHHHHHHHHHHHHHHHHHhCC-CCEEEEecchhhh
Confidence 22111111 367754 55677788864 4675 9999999999975
No 40
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=42.91 E-value=57 Score=34.34 Aligned_cols=68 Identities=9% Similarity=0.073 Sum_probs=47.3
Q ss_pred hhHHHHHHHHhhcCCEEEEEeecCCCCcccCCCCCCCCCCh-HHHHHHHHHHH----hcCCccceeeeeccCCCC
Q 013838 132 QRWDELNQLFNRTRAIVSFGLNALHGRHNIRHNAWGGAWDS-NNARDFLKYTI----SMGYQIDSWEYGNELSGR 201 (435)
Q Consensus 132 ~~~d~f~~f~~~~g~~~i~~lN~~~~~~~~~~~~~~~~w~~-~~A~~~l~y~~----~~g~~v~~wElGNEpd~~ 201 (435)
...+++++-+.+.|.+|+++|.=-..+.... +.-+.|.. +.+..+++||+ ..|.+|++|--=|||+.+
T Consensus 114 ~~Y~~lId~L~~~GI~P~VTL~H~dlP~~L~--~~~GGW~n~~~v~~F~~YA~~~~~~fgdrVk~WiT~NEP~~~ 186 (478)
T PRK09593 114 QFYEDIFKECHKYGIEPLVTITHFDCPMHLI--EEYGGWRNRKMVGFYERLCRTLFTRYKGLVKYWLTFNEINMI 186 (478)
T ss_pred HHHHHHHHHHHHcCCEEEEEecccCCCHHHH--hhcCCCCChHHHHHHHHHHHHHHHHhcCcCCEEEeecchhhh
Confidence 3458888899999999999995221111010 01267754 45677788864 579999999999999965
No 41
>KOG2566 consensus Beta-glucocerebrosidase [Carbohydrate transport and metabolism]
Probab=42.68 E-value=3.9e+02 Score=27.36 Aligned_cols=45 Identities=11% Similarity=0.242 Sum_probs=31.8
Q ss_pred CCCcchHHHHHHHHhcCCceeEee--cCCCCceEEEEEeecCCCcee
Q 013838 372 IPNPDYYSALLWHRLMGKGVLSVA--TDGSSSLRSYAHCSKERLTPL 416 (435)
Q Consensus 372 ~p~P~Yy~~ll~~~~~G~~vl~~~--~~~~~~~~~YA~~~~~~~~~~ 416 (435)
.-.|-||++--|++++-+...+|. ...+..|.+-|+-..++...+
T Consensus 433 YKQPmfya~~hFSkFl~pGs~Rv~~~i~~~~~ve~~aflnpdGskvv 479 (518)
T KOG2566|consen 433 YKQPMFYALGHFSKFLPPGSVRVGHSINQNLDVEATAFLNPDGSKVV 479 (518)
T ss_pred hhccHHHHHHHHhhcCCCCceEeeeeeccccccceeEEEcCCCcEEE
Confidence 347999999999999855444433 334567888888888887543
No 42
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=41.52 E-value=30 Score=36.07 Aligned_cols=66 Identities=15% Similarity=0.165 Sum_probs=45.5
Q ss_pred hHHHHHHHHhhcCCEEEEEeecCCCCcccCCCCCCCCC-ChHHHHHHHHHHH----hcCCccceeeeeccCCCC
Q 013838 133 RWDELNQLFNRTRAIVSFGLNALHGRHNIRHNAWGGAW-DSNNARDFLKYTI----SMGYQIDSWEYGNELSGR 201 (435)
Q Consensus 133 ~~d~f~~f~~~~g~~~i~~lN~~~~~~~~~~~~~~~~w-~~~~A~~~l~y~~----~~g~~v~~wElGNEpd~~ 201 (435)
..+++++-+++.|.+||++|.=-..+....+ .+.| +++.+..+++||+ ..|..|++|--=|||+.+
T Consensus 100 ~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~---~ggw~~~~~~~~F~~Ya~~~~~~~gd~V~~w~T~NEp~~~ 170 (455)
T PF00232_consen 100 FYRDLIDELLENGIEPIVTLYHFDLPLWLED---YGGWLNRETVDWFARYAEFVFERFGDRVKYWITFNEPNVF 170 (455)
T ss_dssp HHHHHHHHHHHTT-EEEEEEESS--BHHHHH---HTGGGSTHHHHHHHHHHHHHHHHHTTTBSEEEEEETHHHH
T ss_pred hhHHHHHHHHhhccceeeeeeecccccceee---cccccCHHHHHHHHHHHHHHHHHhCCCcceEEecccccee
Confidence 3478888899999999999973221111100 2556 3566777888864 578899999999999864
No 43
>PF01870 Hjc: Archaeal holliday junction resolvase (hjc); InterPro: IPR002732 This entry represents Holliday junction resolvases (hjc gene) and related proteins, primarily from archaeal species []. The Holliday junction is an essential intermediate of homologous recombination. Holliday junctions are four-stranded DNA complexes that are formed during recombination and related DNA repair events. In the presence of divalent cations, these junctions exist predominantly as the stacked-X form in which the double-helical segments are coaxially stacked and twisted by 60 degrees in a right-handed direction across the junction cross-over. In this structure, the stacked arms resemble two adjacent double-helices, but are linked at the junction by two common strands that cross-over between the duplexes []. During homologous recombination, genetic information is physically exchanged between parental DNAs via crossing single strands of the same polarity within the four-way Holliday structure. This process is terminated by the endonucleolytic activity of resolvases, which convert the four-way DNA back to two double strands.; PDB: 2WJ0_A 2WIZ_B 2WIW_B 2WCW_C 2WCZ_A 1HH1_A 1GEF_D 1IPI_B 2EO0_B 1OB9_A ....
Probab=37.85 E-value=80 Score=25.00 Aligned_cols=71 Identities=15% Similarity=0.048 Sum_probs=47.2
Q ss_pred HHHHHHHHHcCCceEecCCc-ccceeeeecCCCC-CCCCCCcCCCCCCCCccccccchhhHHHHHHHHhhcCCEEEEEee
Q 013838 76 PLLANAIQAFQSLRIRIGGS-LQDQVLYDVGDLK-APCHPFRKMKDGLFGFSKGCLHMQRWDELNQLFNRTRAIVSFGLN 153 (435)
Q Consensus 76 ~~l~~l~~~l~p~~LRiGG~-~~D~~~~~~~~~~-~~~~p~~~~~~~~~g~~~~~~~~~~~d~f~~f~~~~g~~~i~~lN 153 (435)
..|.+++..-|=.++|..|+ ..|-.--+.+..- -.|... . ..+..+.+.+++.+.+|++..|.++++.+=
T Consensus 4 rel~~~L~~~Gf~v~R~~~Sg~~DiiA~~~~~~l~IEvKs~----~----~~~~~l~~eqve~L~~f~~~fg~~p~iAvK 75 (88)
T PF01870_consen 4 RELVKILWERGFAVVRAAGSGGGDIIAGKGGRYLAIEVKST----S----KDKIYLEKEQVEKLKEFSKRFGAEPLIAVK 75 (88)
T ss_dssp HHHHHHHHHTT-EEEEBSCCSSSSEEEEETTEEEEEEEEEE----S----SSEEEEEHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred HHHHHHHHhCCcEEEEecCCCCcCEEEECCCEEEEEEEeec----c----CCceeECHHHHHHHHHHHHHhCCeEEEEEE
Confidence 35778888888899998665 4465544443210 011100 0 013578999999999999999999999987
Q ss_pred c
Q 013838 154 A 154 (435)
Q Consensus 154 ~ 154 (435)
+
T Consensus 76 ~ 76 (88)
T PF01870_consen 76 F 76 (88)
T ss_dssp E
T ss_pred E
Confidence 6
No 44
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=35.38 E-value=96 Score=32.38 Aligned_cols=106 Identities=13% Similarity=0.102 Sum_probs=64.1
Q ss_pred HHHHHHHHHcCCceEecCCcccceeeeecCCCCCCCCCCcCCCCCCCCccccccchhhHHHHHHHHhhcCCEEEEEeecC
Q 013838 76 PLLANAIQAFQSLRIRIGGSLQDQVLYDVGDLKAPCHPFRKMKDGLFGFSKGCLHMQRWDELNQLFNRTRAIVSFGLNAL 155 (435)
Q Consensus 76 ~~l~~l~~~l~p~~LRiGG~~~D~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~d~f~~f~~~~g~~~i~~lN~~ 155 (435)
+.=+.|++.+|--..|++=.++= +|-.+.+.. .+.- .=...+++.+=|.+.|.+|+++|.=-
T Consensus 62 keDi~L~~emG~~~~R~SI~WsR--IfP~g~~~e---------~N~~-------gl~fY~~l~del~~~gIep~vTL~Hf 123 (460)
T COG2723 62 KEDIALAKEMGLNAFRTSIEWSR--IFPNGDGGE---------VNEK-------GLRFYDRLFDELKARGIEPFVTLYHF 123 (460)
T ss_pred HHHHHHHHHcCCCEEEeeeeEEE--eecCCCCCC---------cCHH-------HHHHHHHHHHHHHHcCCEEEEEeccc
Confidence 44468999999888887544321 121111100 0010 11345788888999999999998632
Q ss_pred CCCcccCCCCCCCCCChHH-HHHHHHHHH----hcCCccceeeeeccCCCC
Q 013838 156 HGRHNIRHNAWGGAWDSNN-ARDFLKYTI----SMGYQIDSWEYGNELSGR 201 (435)
Q Consensus 156 ~~~~~~~~~~~~~~w~~~~-A~~~l~y~~----~~g~~v~~wElGNEpd~~ 201 (435)
..+...-+ .-+.|...+ ...+++||+ +.+.+|++|-.=|||+..
T Consensus 124 d~P~~L~~--~ygGW~nR~~i~~F~~ya~~vf~~f~dkVk~W~TFNE~n~~ 172 (460)
T COG2723 124 DLPLWLQK--PYGGWENRETVDAFARYAATVFERFGDKVKYWFTFNEPNVV 172 (460)
T ss_pred CCcHHHhh--ccCCccCHHHHHHHHHHHHHHHHHhcCcceEEEEecchhhh
Confidence 21111111 115786654 556677764 578899999999999875
No 45
>TIGR01732 tiny_TM_bacill conserved hypothetical tiny transmembrane protein. This model represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=33.66 E-value=25 Score=21.06 Aligned_cols=12 Identities=33% Similarity=0.661 Sum_probs=9.3
Q ss_pred hhhHHHHHHhhh
Q 013838 3 IFLSLFIYLISY 14 (435)
Q Consensus 3 ~~~~~~~~~~~~ 14 (435)
+.+++||.||-.
T Consensus 10 livVLFILLIIi 21 (26)
T TIGR01732 10 LIVVLFILLVIV 21 (26)
T ss_pred HHHHHHHHHHHh
Confidence 567899998865
No 46
>PF10960 DUF2762: Protein of unknown function (DUF2762); InterPro: IPR024405 BhlA is a SP-beta prophage-derived protein found in Bacillus subtilis [, ] and other Bacilli. A related protein, UviB, has also been described in Clostridia, where it is believed to be involved in bacteriocin secretion or immunity [, ].
Probab=28.92 E-value=35 Score=25.93 Aligned_cols=14 Identities=50% Similarity=1.122 Sum_probs=11.5
Q ss_pred chhhHHHHHHhhhh
Q 013838 2 GIFLSLFIYLISYL 15 (435)
Q Consensus 2 ~~~~~~~~~~~~~~ 15 (435)
|+|.+||++|+.|.
T Consensus 13 G~fA~LFv~Ll~yv 26 (71)
T PF10960_consen 13 GIFAVLFVWLLFYV 26 (71)
T ss_pred CcHHHHHHHHHHHH
Confidence 78888888888874
No 47
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=28.17 E-value=1.3e+02 Score=29.24 Aligned_cols=128 Identities=11% Similarity=0.043 Sum_probs=63.3
Q ss_pred ccchhhHHHHHHHHhhcCCEEEEEeecCCCCc-ccCCCCCCCCCChHHHHHHHHHHHhcCCccceeeeeccCCCCCCCCC
Q 013838 128 CLHMQRWDELNQLFNRTRAIVSFGLNALHGRH-NIRHNAWGGAWDSNNARDFLKYTISMGYQIDSWEYGNELSGRTSIGA 206 (435)
Q Consensus 128 ~~~~~~~d~f~~f~~~~g~~~i~~lN~~~~~~-~~~~~~~~~~w~~~~A~~~l~y~~~~g~~v~~wElGNEpd~~~~~~~ 206 (435)
.++......+++||.+.|++-++. +.+=... ...+.+.+..+......++++|++++|..|..|---+.
T Consensus 28 g~~t~~~k~yIDfAa~~G~eYvlv-D~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~~~--------- 97 (273)
T PF10566_consen 28 GATTETQKRYIDFAAEMGIEYVLV-DAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHSET--------- 97 (273)
T ss_dssp SSSHHHHHHHHHHHHHTT-SEEEE-BTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEECCH---------
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEe-ccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEeCCc---------
Confidence 457777899999999999998875 4321100 00000111222345688999999999988867743222
Q ss_pred CCCHHHHHHHHHHHHHHHHHh-hcCCCCCCeEECCCCCCCHHHHHHHHhhhCCCccceEEEee
Q 013838 207 SVDAELYGKDLINLKNIINEL-YKNSSSKPTILAPGGFFDQEWYAKFLQVSGSNVVNGVTHHI 268 (435)
Q Consensus 207 ~~t~~~Ya~d~~~~~~~i~~~-~p~~~~~~~~~gp~~~~~~~~~~~fl~~~~~~~id~vs~H~ 268 (435)
.++...|-++.+++-+.+++. ... .++.+++-+...-..|.+++++.+....+ .|.+|-
T Consensus 98 ~~~~~~~~~~~~~~f~~~~~~Gv~G--vKidF~~~d~Q~~v~~y~~i~~~AA~~~L-mvnfHg 157 (273)
T PF10566_consen 98 GGNVANLEKQLDEAFKLYAKWGVKG--VKIDFMDRDDQEMVNWYEDILEDAAEYKL-MVNFHG 157 (273)
T ss_dssp TTBHHHHHCCHHHHHHHHHHCTEEE--EEEE--SSTSHHHHHHHHHHHHHHHHTT--EEEETT
T ss_pred chhhHhHHHHHHHHHHHHHHcCCCE--EeeCcCCCCCHHHHHHHHHHHHHHHHcCc-EEEecC
Confidence 233444544433333444332 111 12233433322223566777765543212 466774
No 48
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=26.84 E-value=6.2e+02 Score=24.91 Aligned_cols=221 Identities=11% Similarity=0.049 Sum_probs=100.9
Q ss_pred ccchhhHHHHHHHHhhcCCEEEEEeec-CCCCcccCCCCCCC--CCChHH---HHHH-HHHH----HhcC--Cccceeee
Q 013838 128 CLHMQRWDELNQLFNRTRAIVSFGLNA-LHGRHNIRHNAWGG--AWDSNN---ARDF-LKYT----ISMG--YQIDSWEY 194 (435)
Q Consensus 128 ~~~~~~~d~f~~f~~~~g~~~i~~lN~-~~~~~~~~~~~~~~--~w~~~~---A~~~-l~y~----~~~g--~~v~~wEl 194 (435)
.++-+.-|.+++||++.|.++--..=+ ... +|+ +-.. .+++.+ ..+. -+|. ...+ .+|+.|.+
T Consensus 55 ~~~~~~~D~~~~~a~~~g~~vrGH~LvW~~~---~P~-w~~~~~~~~~~~~~~~~~~l~~~I~~v~~~y~~~g~i~~WDV 130 (320)
T PF00331_consen 55 RFNFESADAILDWARENGIKVRGHTLVWHSQ---TPD-WVFNLANGSPDEKEELRARLENHIKTVVTRYKDKGRIYAWDV 130 (320)
T ss_dssp BEE-HHHHHHHHHHHHTT-EEEEEEEEESSS---S-H-HHHTSTTSSBHHHHHHHHHHHHHHHHHHHHTTTTTTESEEEE
T ss_pred ccCccchhHHHHHHHhcCcceeeeeEEEccc---ccc-eeeeccCCCcccHHHHHHHHHHHHHHHHhHhccccceEEEEE
Confidence 344455699999999999987633212 111 121 1111 233332 2222 2332 2345 57999999
Q ss_pred eccCCCCCC--CCCCCCH------HHHHHHHHHHHHHHHHhhcCCCCCCeEECCCCC--CC---H---HHHHHHHhhhCC
Q 013838 195 GNELSGRTS--IGASVDA------ELYGKDLINLKNIINELYKNSSSKPTILAPGGF--FD---Q---EWYAKFLQVSGS 258 (435)
Q Consensus 195 GNEpd~~~~--~~~~~t~------~~Ya~d~~~~~~~i~~~~p~~~~~~~~~gp~~~--~~---~---~~~~~fl~~~~~ 258 (435)
=|||=...+ .+-.-+. .+|.+++-+++ ++.+|+ .+++-=+-. .. . .+.+.+. ..|.
T Consensus 131 vNE~i~~~~~~~~~r~~~~~~~lG~~yi~~aF~~A---~~~~P~----a~L~~NDy~~~~~~k~~~~~~lv~~l~-~~gv 202 (320)
T PF00331_consen 131 VNEAIDDDGNPGGLRDSPWYDALGPDYIADAFRAA---READPN----AKLFYNDYNIESPAKRDAYLNLVKDLK-ARGV 202 (320)
T ss_dssp EES-B-TTSSSSSBCTSHHHHHHTTCHHHHHHHHH---HHHHTT----SEEEEEESSTTSTHHHHHHHHHHHHHH-HTTH
T ss_pred eeecccCCCccccccCChhhhcccHhHHHHHHHHH---HHhCCC----cEEEeccccccchHHHHHHHHHHHHHH-hCCC
Confidence 999865421 1111111 34544444444 455565 455421100 01 1 2233333 3343
Q ss_pred CccceEEEeeeCCCCCCChhhhhhccChhhhhhHHHHHHHHHHHHHHhCCCCceEEcccccCcCCCCCCcchHHHHHHHH
Q 013838 259 NVVNGVTHHIYNLGPGVDPNLVSKILNPQRLSRVSETFGNLKQTIEKHGPWASAWVGESGGAYNSGGRHVSNTFVNSFWY 338 (435)
Q Consensus 259 ~~id~vs~H~Y~~~~g~~~~~~~~ll~~~~l~~~~~~~~~~~~~~~~~~~~~p~wl~Etns~~~~G~~~vsdtf~aaLw~ 338 (435)
.||+|-+...... +. + + +.+...++.+ ..-++|+.+||..-......+.....-..|-++
T Consensus 203 -pIdgIG~Q~H~~~-~~-~--------~---~~i~~~l~~~------~~~Gl~i~ITElDv~~~~~~~~~~~~~~qA~~~ 262 (320)
T PF00331_consen 203 -PIDGIGLQSHFDA-GY-P--------P---EQIWNALDRF------ASLGLPIHITELDVRDDDNPPDAEEEEAQAEYY 262 (320)
T ss_dssp -CS-EEEEEEEEET-TS-S--------H---HHHHHHHHHH------HTTTSEEEEEEEEEESSSTTSCHHHHHHHHHHH
T ss_pred -ccceechhhccCC-CC-C--------H---HHHHHHHHHH------HHcCCceEEEeeeecCCCCCcchHHHHHHHHHH
Confidence 4999987432211 11 1 1 1122222222 134699999998654432221111223456677
Q ss_pred HHHhhhhhccC---CeEEEeeecc------Cc---cc-ccccCCCCCCCcchHHHH
Q 013838 339 LDQLGMSSKYN---TKVYCRQTLV------GG---NY-GLLNATTFIPNPDYYSAL 381 (435)
Q Consensus 339 lD~l~~~A~~g---~~~v~~q~l~------g~---~Y-~l~~~~~~~p~P~Yy~~l 381 (435)
-+++-.+.+.. +..+.-.++. +. .+ .|++.+ ..|.|-|++.+
T Consensus 263 ~~~~~~~~~~~~~~v~git~Wg~~D~~sW~~~~~~~~~~lfd~~-~~~Kpa~~~~~ 317 (320)
T PF00331_consen 263 RDFLTACFSHPPAAVEGITWWGFTDGYSWRPDTPPDRPLLFDED-YQPKPAYDAIV 317 (320)
T ss_dssp HHHHHHHHHTTHCTEEEEEESSSBTTGSTTGGHSEG--SSB-TT-SBB-HHHHHHH
T ss_pred HHHHHHHHhCCccCCCEEEEECCCCCCcccCCCCCCCCeeECCC-cCCCHHHHHHH
Confidence 77776666665 4544433222 12 12 244544 78999999864
No 49
>COG1591 Holliday junction resolvase - archaeal type [DNA replication, recombination, and repair]
Probab=24.75 E-value=1.8e+02 Score=24.99 Aligned_cols=73 Identities=15% Similarity=-0.005 Sum_probs=46.2
Q ss_pred cHHHHHHHHHcCCceEecCCcc------cceeeeecCCCC-CCCCCCcCCCCCCCCccccccchhhHHHHHHHHhhcCCE
Q 013838 75 HPLLANAIQAFQSLRIRIGGSL------QDQVLYDVGDLK-APCHPFRKMKDGLFGFSKGCLHMQRWDELNQLFNRTRAI 147 (435)
Q Consensus 75 ~~~l~~l~~~l~p~~LRiGG~~------~D~~~~~~~~~~-~~~~p~~~~~~~~~g~~~~~~~~~~~d~f~~f~~~~g~~ 147 (435)
-..|+++++..|=++||..++- -|-.-.+.+.-- -.|.... ..+..+.+.+.+.+..|++..|.+
T Consensus 10 EReLv~~L~e~GfAvvR~paSG~sk~p~pDivA~~g~~~l~iE~K~~~--------~~kiYl~~e~ve~L~~FA~~fGg~ 81 (137)
T COG1591 10 ERELVRILWERGFAVVRAPASGGSKRPLPDIVAGNGGVYLAIEVKSRR--------ETKIYLDKEQVEKLVEFARRFGGE 81 (137)
T ss_pred HHHHHHHHHhcCceEEEcccCCCCCCCCCCEEecCCCEEEEEEEEecc--------CCcEEEcHHHHHHHHHHHHHcCCc
Confidence 3568888899999999983332 122111111000 0111100 124578899999999999999999
Q ss_pred EEEEeecC
Q 013838 148 VSFGLNAL 155 (435)
Q Consensus 148 ~i~~lN~~ 155 (435)
+++++-+.
T Consensus 82 p~iavKf~ 89 (137)
T COG1591 82 PYIAVKFP 89 (137)
T ss_pred eEEEEEeC
Confidence 99999764
No 50
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=24.39 E-value=5e+02 Score=26.57 Aligned_cols=133 Identities=17% Similarity=0.102 Sum_probs=65.3
Q ss_pred HHHHHHHHHcCCceEecCCcccceeeeecCCCCCCCCCCcCCCCCCCCccccccch-hhHHHHHHHHhhcCCEEEEEeec
Q 013838 76 PLLANAIQAFQSLRIRIGGSLQDQVLYDVGDLKAPCHPFRKMKDGLFGFSKGCLHM-QRWDELNQLFNRTRAIVSFGLNA 154 (435)
Q Consensus 76 ~~l~~l~~~l~p~~LRiGG~~~D~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~-~~~d~f~~f~~~~g~~~i~~lN~ 154 (435)
......++..|--.||+.=+.-...+.+. ..| +..+ .+. ...++..+++++.|..+++.+-.
T Consensus 76 ~~~~~~ik~~G~n~VRiPi~~~~~~~~~~------~~p------~~~~-----~~~~~~ld~~I~~a~~~gi~V~iD~H~ 138 (407)
T COG2730 76 EEDFDQIKSAGFNAVRIPIGYWALQATDG------DNP------YLIG-----LTQLKILDEAINWAKKLGIYVLIDLHG 138 (407)
T ss_pred hhHHHHHHHcCCcEEEcccchhhhhccCC------CCC------Ceec-----chHHHHHHHHHHHHHhcCeeEEEEecc
Confidence 55667778899999996333111111110 001 0100 111 15688999999999999998643
Q ss_pred CCCC-cccCCCCCCCCCCh-----HHHHHHHHHH-Hh--cCCccceeeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 013838 155 LHGR-HNIRHNAWGGAWDS-----NNARDFLKYT-IS--MGYQIDSWEYGNELSGRTSIGASVDAELYGKDLINLKNIIN 225 (435)
Q Consensus 155 ~~~~-~~~~~~~~~~~w~~-----~~A~~~l~y~-~~--~g~~v~~wElGNEpd~~~~~~~~~t~~~Ya~d~~~~~~~i~ 225 (435)
..+. .........+.+.. +.-.+..++. .+ ....|-.+|+=|||.+. ..+..|+... ...+..+++.+.
T Consensus 139 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~w~~ia~~f~~~~~VIg~~~~NEP~~~-~~~~~w~~~~-~~A~~~v~~~i~ 216 (407)
T COG2730 139 YPGGNNGHEHSGYTSDYKEENENVEATIDIWKFIANRFKNYDTVIGFELINEPNGI-VTSETWNGGD-DEAYDVVRNAIL 216 (407)
T ss_pred cCCCCCCcCcccccccccccchhHHHHHHHHHHHHHhccCCCceeeeeeecCCccc-CCccccccch-HHHHHHHHhhhh
Confidence 2211 00000001122222 3333444443 22 23447689999999962 2223333322 233444445554
Q ss_pred Hh
Q 013838 226 EL 227 (435)
Q Consensus 226 ~~ 227 (435)
..
T Consensus 217 ~~ 218 (407)
T COG2730 217 SN 218 (407)
T ss_pred hc
Confidence 43
No 51
>PRK10984 DNA-binding transcriptional regulator Crl; Provisional
Probab=24.32 E-value=79 Score=26.81 Aligned_cols=31 Identities=16% Similarity=0.313 Sum_probs=26.3
Q ss_pred CCCcHHHHHHHHHcCCceEecCCcccceeeee
Q 013838 72 DLSHPLLANAIQAFQSLRIRIGGSLQDQVLYD 103 (435)
Q Consensus 72 ~~~~~~l~~l~~~l~p~~LRiGG~~~D~~~~~ 103 (435)
+.++.+|+...++||| |||=+=+.-+++.||
T Consensus 6 ~~~~~RLlk~f~alGP-YlRE~qc~e~~ffFD 36 (127)
T PRK10984 6 GHPKSRLIKKFTALGP-YLREGQCEENRFFFD 36 (127)
T ss_pred CCCchHHHHHHHHhCc-hhchhcccCCCEEee
Confidence 3567788888888987 999999999998887
No 52
>PF06692 MNSV_P7B: Melon necrotic spot virus P7B protein; InterPro: IPR009575 This family consists of several Melon necrotic spot virus (MNSV) P7B proteins. The function of this family is unknown.
Probab=24.19 E-value=1.7e+02 Score=20.98 Aligned_cols=44 Identities=16% Similarity=0.295 Sum_probs=27.5
Q ss_pred chhhHHHHHHhhhhhhhhccccceEEEEecCCCcccccCCceeEEEec
Q 013838 2 GIFLSLFIYLISYLPVILARDVTRVTIFVDATKTVATNDEHFICATVD 49 (435)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~i~~~f~g~sie 49 (435)
|.||+|||-++..+-.+.++-.....=+++.+ .+--.++|++.|
T Consensus 15 ~~lLiliis~~f~lI~~l~qq~~~y~HH~d~S----s~KTQyvgIsTn 58 (61)
T PF06692_consen 15 GPLLILIISFVFFLITSLGQQGNTYVHHFDNS----SVKTQYVGISTN 58 (61)
T ss_pred hHHHHHHHHHHHHHHhhhccCCCeeEEeecCc----cceeEEEEEecC
Confidence 56888888877776666666555555555543 223346666655
No 53
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=24.01 E-value=68 Score=31.45 Aligned_cols=46 Identities=11% Similarity=0.328 Sum_probs=35.3
Q ss_pred hhcCCEEEEEeecCCCCcccCCCCCCCCCChHHHHHHHHHHHhcCCc-cceeeeecc
Q 013838 142 NRTRAIVSFGLNALHGRHNIRHNAWGGAWDSNNARDFLKYTISMGYQ-IDSWEYGNE 197 (435)
Q Consensus 142 ~~~g~~~i~~lN~~~~~~~~~~~~~~~~w~~~~A~~~l~y~~~~g~~-v~~wElGNE 197 (435)
+..|+.+|+|+|--.. .-...++|+.++.+++++|.. +..|.+.=.
T Consensus 219 ~~ig~TpMiG~nD~~~----------e~ft~~da~~~~~fA~~~~l~~~s~Ws~~RD 265 (294)
T cd06543 219 AMIGVTPMIGVNDVGS----------EVFTLADAQTLVDFAKEKGLGRLSMWSLNRD 265 (294)
T ss_pred HHccccccccccCCCC----------ceeeHHHHHHHHHHHHhCCCCeEeeeeccCC
Confidence 3589999999995321 135789999999999988865 888988533
No 54
>KOG0564 consensus 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=22.76 E-value=3.2e+02 Score=28.82 Aligned_cols=48 Identities=17% Similarity=0.158 Sum_probs=32.6
Q ss_pred chhhHHHHHHHHhhcCCEEEEEeecCCCCcccCCCCCCCCCChHH-----HHHHHHHHHh
Q 013838 130 HMQRWDELNQLFNRTRAIVSFGLNALHGRHNIRHNAWGGAWDSNN-----ARDFLKYTIS 184 (435)
Q Consensus 130 ~~~~~d~f~~f~~~~g~~~i~~lN~~~~~~~~~~~~~~~~w~~~~-----A~~~l~y~~~ 184 (435)
..+..|.-++-|+..|.+=|+.|- | ++|- ....|...+ |.++++|.++
T Consensus 90 ~~~~Id~aLe~a~~~GirNILALR---G--DpP~--g~d~~~~~e~gF~yA~DLVr~Irs 142 (590)
T KOG0564|consen 90 PKEMIDKALEQAKALGIRNILALR---G--DPPI--GQDKWVEEEGGFRYAVDLVRYIRS 142 (590)
T ss_pred cHHHHHHHHHHHHHhCchhhhhhc---C--CCCC--CccccccccCCchhHHHHHHHHHH
Confidence 456678888889999999888652 2 1221 123465554 9999999865
No 55
>PF01522 Polysacc_deac_1: Polysaccharide deacetylase; InterPro: IPR002509 This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase []. It also includes chitin deacetylase from yeast [], and endoxylanases which hydrolyses glucosidic bonds in xylan [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0005975 carbohydrate metabolic process; PDB: 2IW0_A 2CC0_B 2VYO_A 2J13_A 2C71_A 2C79_A 1W1A_1 1W1B_1 1W17_A 1NY1_B ....
Probab=22.76 E-value=3.5e+02 Score=21.63 Aligned_cols=78 Identities=17% Similarity=0.226 Sum_probs=48.3
Q ss_pred hhhHHHHHHHHhhcCCEEEEEeecCCCCcccCCCCCCCCCChHHHHHHHHHHHhcCCccceeeeeccCCCCCCCCCCCCH
Q 013838 131 MQRWDELNQLFNRTRAIVSFGLNALHGRHNIRHNAWGGAWDSNNARDFLKYTISMGYQIDSWEYGNELSGRTSIGASVDA 210 (435)
Q Consensus 131 ~~~~d~f~~f~~~~g~~~i~~lN~~~~~~~~~~~~~~~~w~~~~A~~~l~y~~~~g~~v~~wElGNEpd~~~~~~~~~t~ 210 (435)
...+..++++.++.|++..|-+.-. | ..+-.++++...+. .+||||-.+.. ..-...+.
T Consensus 17 ~~~~~~~~~~l~~~~i~at~fv~~~--------------~-~~~~~~~l~~l~~~-----G~ei~~H~~~H-~~~~~~~~ 75 (123)
T PF01522_consen 17 RDNYDRLLPLLKKYGIPATFFVIGS--------------W-VERYPDQLRELAAA-----GHEIGNHGWSH-PNLSTLSP 75 (123)
T ss_dssp HTHHHHHHHHHHHTT--EEEEE-HH--------------H-HHHHHHHHHHHHHT-----T-EEEEE-SSS-SCGGGS-H
T ss_pred hhhHHHHHHHHHhcccceeeeeccc--------------c-cccccccchhHHHH-----HHHHHhcCCcc-cccccCCH
Confidence 4556899999999999988877531 1 22223444444332 48889887654 12235688
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 013838 211 ELYGKDLINLKNIINELYK 229 (435)
Q Consensus 211 ~~Ya~d~~~~~~~i~~~~p 229 (435)
++..++..+-++.|++..+
T Consensus 76 ~~~~~ei~~~~~~l~~~~g 94 (123)
T PF01522_consen 76 EELRREIERSREILEEITG 94 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 8888999999999988753
No 56
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=22.75 E-value=6.5e+02 Score=25.71 Aligned_cols=98 Identities=15% Similarity=0.206 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCeEECCCCCCCHHHHHHHHhhhCCCccceEEEeeeCCCCCCChhhhhhccChhhhhhHHHH
Q 013838 216 DLINLKNIINELYKNSSSKPTILAPGGFFDQEWYAKFLQVSGSNVVNGVTHHIYNLGPGVDPNLVSKILNPQRLSRVSET 295 (435)
Q Consensus 216 d~~~~~~~i~~~~p~~~~~~~~~gp~~~~~~~~~~~fl~~~~~~~id~vs~H~Y~~~~g~~~~~~~~ll~~~~l~~~~~~ 295 (435)
|+..++-.++++.........++--|-+.+.+++..||+..+- .. +.|..+...+..+.. +.....
T Consensus 15 E~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~~~le~~~i---~~---pdy~L~i~~~~~tl~--------~~t~~~ 80 (383)
T COG0381 15 EAIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLDQVLELFGI---RK---PDYDLNIMKPGQTLG--------EITGNI 80 (383)
T ss_pred HHHHHhHHHHHHHhCCCCceEEEEecccccHHHHHHHHHHhCC---CC---CCcchhccccCCCHH--------HHHHHH
Confidence 4556777777663332123445544556677888999876643 22 344433221111111 123345
Q ss_pred HHHHHHHHHHhCCCCceEEcccccCcCCCCCCcchHHHHHHHH
Q 013838 296 FGNLKQTIEKHGPWASAWVGESGGAYNSGGRHVSNTFVNSFWY 338 (435)
Q Consensus 296 ~~~~~~~~~~~~~~~p~wl~Etns~~~~G~~~vsdtf~aaLw~ 338 (435)
+..+.+++.+..|+..+..|-|++ +|++||+.
T Consensus 81 i~~~~~vl~~~kPD~VlVhGDT~t-----------~lA~alaa 112 (383)
T COG0381 81 IEGLSKVLEEEKPDLVLVHGDTNT-----------TLAGALAA 112 (383)
T ss_pred HHHHHHHHHhhCCCEEEEeCCcch-----------HHHHHHHH
Confidence 667788888888999999998874 56666663
No 57
>COG4124 ManB Beta-mannanase [Carbohydrate transport and metabolism]
Probab=22.38 E-value=4.6e+02 Score=26.40 Aligned_cols=114 Identities=15% Similarity=0.111 Sum_probs=63.3
Q ss_pred eeeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHh--hcCCCCCCeEE-CCCCCCCHHHHHHHHhhhCCCccceEEEe
Q 013838 191 SWEYGNELSGRTSIGASVDAELYGKDLINLKNIINEL--YKNSSSKPTIL-APGGFFDQEWYAKFLQVSGSNVVNGVTHH 267 (435)
Q Consensus 191 ~wElGNEpd~~~~~~~~~t~~~Ya~d~~~~~~~i~~~--~p~~~~~~~~~-gp~~~~~~~~~~~fl~~~~~~~id~vs~H 267 (435)
+|--==|++..+-+...++++||.+-|+...+.|.+. .+. .++. .|.+. .+..+.+.. |...+|.|.+-
T Consensus 183 y~r~~mE~n~~~FwWg~~d~~~yk~lw~~~~dy~~~~r~l~~----lk~~yspn~~--~~~~~~yYP--Gd~YVDiVGL~ 254 (355)
T COG4124 183 YWRPEMEMNSGWFWWGFWDPNQYKQLWIRLHDYLRKSRGLPW----LKFMYSPNGG--FKGLEAYYP--GDNYVDIVGLD 254 (355)
T ss_pred EechhhccCCCeeeeccCCHHHHHHHHHHHHHHHhhccCCCe----eEEEEcCCCC--cccchhcCC--CCceeeeeeee
Confidence 7777777776544456899999999999999999876 222 3443 34332 122333332 33368888888
Q ss_pred eeCCCCCCChhhhhhccChhhhhhHHHHHHHHHHHHHHhCCCCceEEcccccCc
Q 013838 268 IYNLGPGVDPNLVSKILNPQRLSRVSETFGNLKQTIEKHGPWASAWVGESGGAY 321 (435)
Q Consensus 268 ~Y~~~~g~~~~~~~~ll~~~~l~~~~~~~~~~~~~~~~~~~~~p~wl~Etns~~ 321 (435)
-|...+ ++. .+.....++.+....-+. +..+-++|+|+.|+|...
T Consensus 255 ~ysd~~-~n~--~~~~~~~tyaelt~~gy~------~~~~~nKPf~faElGp~~ 299 (355)
T COG4124 255 VYSDDP-YNQ--GDTGRDKTYAELTGPGYN------RVAGFNKPFGFAELGPEG 299 (355)
T ss_pred ccccCc-ccc--ccccccccHHHHhcCcch------hhhhcCCceeeecccccC
Confidence 886542 110 011111111111110011 112346999999999754
No 58
>PF07417 Crl: Transcriptional regulator Crl; InterPro: IPR009986 This family contains the bacterial transcriptional regulator Crl (approximately 130 residues long). This is a transcriptional regulator of the csgA curlin subunit gene for curli fibres that are found on the surface of certain bacteria [].These proteins bind to the sigma-S subunit of RNA polymerase, activating expression of sigma-S-regulated genes. They also stimulate RNA polymerase holoenzyme formation and may bind to several other sigma factors, such as sigma-70 and sigma-32.; GO: 0016987 sigma factor activity, 0045893 positive regulation of transcription, DNA-dependent, 0005737 cytoplasm; PDB: 3RPJ_A.
Probab=21.77 E-value=69 Score=27.05 Aligned_cols=30 Identities=23% Similarity=0.424 Sum_probs=22.2
Q ss_pred CCcHHHHHHHHHcCCceEecCCcccceeeee
Q 013838 73 LSHPLLANAIQAFQSLRIRIGGSLQDQVLYD 103 (435)
Q Consensus 73 ~~~~~l~~l~~~l~p~~LRiGG~~~D~~~~~ 103 (435)
.++.+|....++||| |||=+=+..|++.||
T Consensus 5 ~~~~RLlk~f~alGP-YlRE~qc~e~~ffFD 34 (125)
T PF07417_consen 5 PTHSRLLKKFAALGP-YLREGQCQEDRFFFD 34 (125)
T ss_dssp S-HHHHHHHHHTT-T-TB-GGG-BTTEEEEE
T ss_pred CchHHHHHHHHhhCc-hhcccccccCcEeee
Confidence 457778888888886 999999999999987
No 59
>PLN02803 beta-amylase
Probab=20.94 E-value=2.5e+02 Score=29.88 Aligned_cols=95 Identities=13% Similarity=0.133 Sum_probs=52.9
Q ss_pred cchhhHHHHHHHHhhcCCEEEEEeecC--CCCcccCCC--CCCCCCChHHHHH--HHHHHHhcCC---ccceeeeeccCC
Q 013838 129 LHMQRWDELNQLFNRTRAIVSFGLNAL--HGRHNIRHN--AWGGAWDSNNARD--FLKYTISMGY---QIDSWEYGNELS 199 (435)
Q Consensus 129 ~~~~~~d~f~~f~~~~g~~~i~~lN~~--~~~~~~~~~--~~~~~w~~~~A~~--~l~y~~~~g~---~v~~wElGNEpd 199 (435)
+..+...++.+++|+.|+++...+.+- .+. +.|. -+-..|..+.... =+-|..+.|. .-..|.+-|+|-
T Consensus 141 YdWsgY~~l~~mvr~~GLKlq~vmSFHqCGGN--VGD~~~IpLP~WV~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pv 218 (548)
T PLN02803 141 YNWEGYAELVQMVQKHGLKLQVVMSFHQCGGN--VGDSCSIPLPPWVLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPV 218 (548)
T ss_pred CCcHHHHHHHHHHHHcCCeEEEEEEecccCCC--CCCcccccCCHHHHHhhhcCCCceEecCCCCcccceeccccccchh
Confidence 344556999999999999999888773 221 2110 1122342221110 0111112221 122555666666
Q ss_pred CCCCCCCCCCH-HHHHHHHHHHHHHHHHhhcC
Q 013838 200 GRTSIGASVDA-ELYGKDLINLKNIINELYKN 230 (435)
Q Consensus 200 ~~~~~~~~~t~-~~Ya~d~~~~~~~i~~~~p~ 230 (435)
+. .-|| +.|.+-.+.|++.++.+..+
T Consensus 219 l~-----GRTplq~Y~Dfm~SFr~~F~~~l~~ 245 (548)
T PLN02803 219 LR-----GRTPIQVYSDYMRSFRERFKDYLGG 245 (548)
T ss_pred cc-----CCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 53 3466 66988889999999887543
Done!