Query 013839
Match_columns 435
No_of_seqs 179 out of 2000
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 18:04:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013839.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013839hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4h51_A Aspartate aminotransfer 100.0 1.1E-61 3.7E-66 473.3 36.3 399 21-424 16-418 (420)
2 3k7y_A Aspartate aminotransfer 100.0 1.5E-60 5.3E-65 465.3 39.7 394 23-422 2-404 (405)
3 3meb_A Aspartate aminotransfer 100.0 5.6E-55 1.9E-59 433.6 42.3 405 20-424 19-445 (448)
4 4f4e_A Aromatic-amino-acid ami 100.0 7.4E-54 2.5E-58 422.5 41.6 397 21-420 20-419 (420)
5 7aat_A Aspartate aminotransfer 100.0 8.5E-54 2.9E-58 419.5 39.6 397 24-420 2-400 (401)
6 4eu1_A Mitochondrial aspartate 100.0 9.3E-54 3.2E-58 420.3 36.9 399 18-420 9-408 (409)
7 3fsl_A Aromatic-amino-acid ami 100.0 4.6E-51 1.6E-55 399.4 43.1 392 25-419 1-396 (397)
8 1ajs_A Aspartate aminotransfer 100.0 5.7E-49 1.9E-53 386.6 41.2 398 24-423 4-411 (412)
9 1yaa_A Aspartate aminotransfer 100.0 1.3E-48 4.6E-53 384.0 40.6 398 23-422 2-410 (412)
10 2q7w_A Aspartate aminotransfer 100.0 3.6E-48 1.2E-52 378.8 37.3 392 25-419 1-395 (396)
11 2ay1_A Aroat, aromatic amino a 100.0 4E-47 1.4E-51 371.2 38.3 389 25-419 1-392 (394)
12 3rq1_A Aminotransferase class 100.0 1.5E-46 5.1E-51 370.1 31.7 380 29-424 13-416 (418)
13 1b5p_A Protein (aspartate amin 100.0 3.4E-46 1.2E-50 363.6 27.3 360 29-421 8-383 (385)
14 3t18_A Aminotransferase class 100.0 8.7E-46 3E-50 364.0 30.0 380 25-424 8-411 (413)
15 3dyd_A Tyrosine aminotransfera 100.0 8E-46 2.7E-50 365.8 29.0 372 25-424 27-425 (427)
16 3tcm_A Alanine aminotransferas 100.0 3.2E-43 1.1E-47 353.4 38.7 345 68-426 107-497 (500)
17 3fvs_A Kynurenine--oxoglutarat 100.0 1E-44 3.5E-49 357.4 23.5 371 24-422 5-421 (422)
18 3b46_A Aminotransferase BNA3; 100.0 2.9E-44 1E-48 356.6 26.8 342 48-418 55-442 (447)
19 3ihj_A Alanine aminotransferas 100.0 3.7E-43 1.3E-47 352.4 31.8 361 51-426 64-496 (498)
20 3h14_A Aminotransferase, class 100.0 5.2E-43 1.8E-47 341.7 29.8 349 36-424 18-383 (391)
21 1gd9_A Aspartate aminotransfer 100.0 6.8E-43 2.3E-47 340.6 30.2 364 29-424 7-387 (389)
22 3aow_A Putative uncharacterize 100.0 4.3E-43 1.5E-47 348.0 29.2 360 32-423 61-445 (448)
23 2x5d_A Probable aminotransfera 100.0 3.4E-43 1.2E-47 345.5 27.6 367 25-424 10-399 (412)
24 3e2y_A Kynurenine-oxoglutarate 100.0 7.1E-44 2.4E-48 349.9 22.5 363 28-418 4-408 (410)
25 3jtx_A Aminotransferase; NP_28 100.0 8E-43 2.7E-47 340.9 28.6 339 47-420 27-395 (396)
26 3nra_A Aspartate aminotransfer 100.0 1.9E-43 6.6E-48 346.4 23.5 344 51-423 40-405 (407)
27 1j32_A Aspartate aminotransfer 100.0 1.4E-42 4.9E-47 338.2 28.8 354 38-423 19-387 (388)
28 2o1b_A Aminotransferase, class 100.0 8E-43 2.7E-47 341.9 24.9 342 48-422 45-402 (404)
29 2r2n_A Kynurenine/alpha-aminoa 100.0 2.6E-42 8.9E-47 340.5 27.8 367 29-422 11-423 (425)
30 2x5f_A Aspartate_tyrosine_phen 100.0 3.4E-42 1.2E-46 340.2 27.3 352 49-423 46-429 (430)
31 3ele_A Amino transferase; RER0 100.0 5.5E-42 1.9E-46 335.2 25.8 340 49-424 34-397 (398)
32 1o4s_A Aspartate aminotransfer 100.0 1.8E-41 6E-46 330.7 27.7 338 48-421 39-387 (389)
33 2o0r_A RV0858C (N-succinyldiam 100.0 5E-42 1.7E-46 337.1 23.9 362 27-423 5-396 (411)
34 1u08_A Hypothetical aminotrans 100.0 1.1E-41 3.6E-46 331.9 25.9 357 26-418 9-385 (386)
35 3g0t_A Putative aminotransfera 100.0 6.2E-42 2.1E-46 339.0 24.4 360 37-422 31-436 (437)
36 3qgu_A LL-diaminopimelate amin 100.0 1.2E-41 4.1E-46 338.2 26.5 340 47-424 66-441 (449)
37 3ppl_A Aspartate aminotransfer 100.0 1.2E-41 4.1E-46 336.0 26.1 347 49-424 32-421 (427)
38 1xi9_A Putative transaminase; 100.0 5.8E-41 2E-45 328.9 28.9 366 26-423 16-403 (406)
39 2dou_A Probable N-succinyldiam 100.0 1.9E-41 6.5E-46 328.9 24.9 337 48-420 23-375 (376)
40 1yiz_A Kynurenine aminotransfe 100.0 2.9E-41 9.8E-46 333.5 25.7 363 27-421 17-427 (429)
41 3fdb_A Beta C-S lyase, putativ 100.0 2.3E-41 7.9E-46 328.3 23.7 339 48-422 21-375 (377)
42 1bw0_A TAT, protein (tyrosine 100.0 7.1E-41 2.4E-45 329.3 27.5 355 50-424 33-414 (416)
43 2gb3_A Aspartate aminotransfer 100.0 3.3E-40 1.1E-44 323.9 31.6 345 48-431 41-409 (409)
44 3ezs_A Aminotransferase ASPB; 100.0 4.5E-41 1.5E-45 326.2 25.1 347 34-422 6-374 (376)
45 1vp4_A Aminotransferase, putat 100.0 3.4E-41 1.2E-45 332.5 24.5 352 49-427 42-422 (425)
46 3d6k_A Putative aminotransfera 100.0 1.2E-40 3.9E-45 328.4 27.8 358 36-424 20-419 (422)
47 2z61_A Probable aspartate amin 100.0 2.4E-40 8.2E-45 320.5 28.2 329 48-421 27-369 (370)
48 3ei9_A LL-diaminopimelate amin 100.0 1.1E-40 3.7E-45 329.7 25.8 336 48-422 54-427 (432)
49 3piu_A 1-aminocyclopropane-1-c 100.0 4.7E-40 1.6E-44 325.4 30.0 348 50-424 38-433 (435)
50 1v2d_A Glutamine aminotransfer 100.0 3.3E-40 1.1E-44 320.8 27.6 335 50-425 25-373 (381)
51 3ez1_A Aminotransferase MOCR f 100.0 2.3E-40 8E-45 326.4 26.4 359 38-425 15-417 (423)
52 3dzz_A Putative pyridoxal 5'-p 100.0 4.6E-40 1.6E-44 320.6 27.4 345 48-423 25-389 (391)
53 3kax_A Aminotransferase, class 100.0 3.3E-40 1.1E-44 320.7 25.9 341 48-420 22-382 (383)
54 1iay_A ACC synthase 2, 1-amino 100.0 1.7E-39 5.8E-44 320.7 31.3 346 50-422 36-426 (428)
55 2zyj_A Alpha-aminodipate amino 100.0 1.7E-39 5.9E-44 317.5 30.1 341 49-424 31-394 (397)
56 2zc0_A Alanine glyoxylate tran 100.0 3.6E-39 1.2E-43 316.2 31.2 347 48-423 32-404 (407)
57 3g7q_A Valine-pyruvate aminotr 100.0 8.1E-40 2.8E-44 321.8 25.1 360 34-424 14-414 (417)
58 3get_A Histidinol-phosphate am 100.0 8.5E-39 2.9E-43 308.9 31.2 324 49-420 29-364 (365)
59 4dq6_A Putative pyridoxal phos 100.0 1.3E-39 4.6E-44 317.3 25.7 339 49-420 31-390 (391)
60 3ly1_A Putative histidinol-pho 100.0 1.3E-38 4.3E-43 306.4 31.6 328 47-422 13-351 (354)
61 3op7_A Aminotransferase class 100.0 1.2E-39 4E-44 316.2 24.5 313 75-424 47-372 (375)
62 1c7n_A Cystalysin; transferase 100.0 2.1E-39 7.3E-44 317.0 25.2 345 50-425 31-395 (399)
63 3f6t_A Aspartate aminotransfer 100.0 3.7E-40 1.3E-44 333.2 19.5 343 51-425 104-527 (533)
64 1d2f_A MALY protein; aminotran 100.0 1.1E-38 3.7E-43 311.0 27.4 341 50-423 28-389 (390)
65 3ffh_A Histidinol-phosphate am 100.0 4.2E-38 1.4E-42 303.8 31.0 322 48-419 30-362 (363)
66 3l8a_A METC, putative aminotra 100.0 3.3E-39 1.1E-43 317.9 23.0 342 49-421 60-420 (421)
67 3asa_A LL-diaminopimelate amin 100.0 3.9E-39 1.3E-43 315.3 22.8 337 48-424 31-394 (400)
68 3if2_A Aminotransferase; YP_26 100.0 5.7E-39 2E-43 318.4 22.8 352 49-425 30-442 (444)
69 1fg7_A Histidinol phosphate am 100.0 3.4E-38 1.2E-42 303.7 27.0 314 50-418 29-353 (356)
70 3euc_A Histidinol-phosphate am 100.0 3.7E-38 1.3E-42 304.7 26.8 325 48-420 28-365 (367)
71 2zy4_A L-aspartate beta-decarb 100.0 2.7E-39 9.1E-44 327.0 19.1 340 52-424 106-523 (546)
72 3p1t_A Putative histidinol-pho 100.0 3.5E-36 1.2E-40 287.3 29.6 313 48-420 14-334 (337)
73 3b1d_A Betac-S lyase; HET: PLP 100.0 2.2E-40 7.5E-45 323.3 0.0 341 50-421 31-391 (392)
74 1lc5_A COBD, L-threonine-O-3-p 100.0 3.1E-36 1E-40 291.0 28.4 337 36-423 11-360 (364)
75 3cq5_A Histidinol-phosphate am 100.0 2.1E-36 7.2E-41 292.7 26.9 326 51-421 31-366 (369)
76 3ftb_A Histidinol-phosphate am 100.0 7.6E-36 2.6E-40 287.7 27.5 322 48-421 24-359 (361)
77 3bwn_A AT1G70560, L-tryptophan 100.0 6.9E-38 2.4E-42 305.3 13.1 326 48-422 20-386 (391)
78 3hdo_A Histidinol-phosphate am 100.0 2.5E-35 8.4E-40 284.2 29.3 317 48-421 24-353 (360)
79 1uu1_A Histidinol-phosphate am 100.0 1.5E-35 5.2E-40 282.8 24.2 310 50-419 19-334 (335)
80 2hox_A ALLIIN lyase 1; cystein 100.0 2.9E-36 9.9E-41 296.9 13.1 328 49-422 55-424 (427)
81 3fkd_A L-threonine-O-3-phospha 100.0 3.8E-34 1.3E-38 274.7 24.1 317 48-424 13-343 (350)
82 3a2b_A Serine palmitoyltransfe 100.0 3.5E-33 1.2E-37 272.8 25.8 330 48-424 41-393 (398)
83 3tqx_A 2-amino-3-ketobutyrate 100.0 4E-31 1.4E-35 258.1 25.3 328 48-424 41-397 (399)
84 1t3i_A Probable cysteine desul 100.0 1.1E-30 3.6E-35 256.7 24.5 327 50-425 27-415 (420)
85 1e5e_A MGL, methionine gamma-l 100.0 1E-29 3.4E-34 248.5 30.4 314 51-423 19-395 (404)
86 1bs0_A Protein (8-amino-7-oxon 100.0 1.4E-29 4.8E-34 246.0 27.0 321 48-419 37-383 (384)
87 1kmj_A Selenocysteine lyase; p 100.0 3.4E-30 1.2E-34 251.9 22.8 325 50-423 22-405 (406)
88 2dr1_A PH1308 protein, 386AA l 100.0 1.6E-29 5.4E-34 245.5 26.6 287 95-424 52-380 (386)
89 1eg5_A Aminotransferase; PLP-d 100.0 5.3E-30 1.8E-34 248.6 21.3 291 88-425 40-378 (384)
90 2e7j_A SEP-tRNA:Cys-tRNA synth 100.0 2.2E-30 7.5E-35 250.3 18.3 323 49-423 6-370 (371)
91 1jg8_A L-ALLO-threonine aldola 100.0 1.1E-29 3.8E-34 243.2 22.1 321 50-422 3-345 (347)
92 1fc4_A 2-amino-3-ketobutyrate 100.0 2.2E-29 7.7E-34 246.0 24.5 326 48-424 43-398 (401)
93 1sff_A 4-aminobutyrate aminotr 100.0 5.2E-30 1.8E-34 252.5 20.0 340 48-423 39-424 (426)
94 2w8t_A SPT, serine palmitoyltr 100.0 2.7E-29 9.1E-34 247.6 24.7 327 48-424 62-416 (427)
95 1vjo_A Alanine--glyoxylate ami 100.0 2.3E-29 8E-34 245.1 23.9 292 87-420 60-392 (393)
96 2bwn_A 5-aminolevulinate synth 100.0 4.7E-28 1.6E-32 236.7 28.3 328 49-422 45-399 (401)
97 2eh6_A Acoat, acetylornithine 100.0 3.8E-29 1.3E-33 242.1 20.0 324 48-419 26-374 (375)
98 3kki_A CAI-1 autoinducer synth 100.0 2.1E-28 7.3E-33 239.8 25.5 323 48-423 57-404 (409)
99 4adb_A Succinylornithine trans 100.0 3.7E-29 1.3E-33 244.8 19.7 333 48-424 37-401 (406)
100 2ez2_A Beta-tyrosinase, tyrosi 100.0 8.8E-28 3E-32 238.8 29.6 337 48-424 31-432 (456)
101 1elu_A L-cysteine/L-cystine C- 100.0 3.9E-29 1.3E-33 243.1 19.4 323 50-418 15-387 (390)
102 3zrp_A Serine-pyruvate aminotr 100.0 1.5E-28 5.3E-33 238.3 23.4 291 91-424 34-364 (384)
103 1svv_A Threonine aldolase; str 100.0 3.4E-28 1.2E-32 233.7 24.6 329 48-422 11-357 (359)
104 2z9v_A Aspartate aminotransfer 100.0 2.6E-28 8.9E-33 237.6 24.1 289 91-424 41-372 (392)
105 2ch1_A 3-hydroxykynurenine tra 100.0 2.1E-28 7E-33 238.6 23.4 289 93-425 52-385 (396)
106 2huf_A Alanine glyoxylate amin 100.0 2.9E-28 9.9E-33 237.3 23.8 322 48-425 16-385 (393)
107 1iug_A Putative aspartate amin 100.0 3E-28 1E-32 233.5 21.9 305 68-423 11-348 (352)
108 2ord_A Acoat, acetylornithine 100.0 1E-28 3.5E-33 241.1 18.5 324 48-422 38-396 (397)
109 3lvm_A Cysteine desulfurase; s 100.0 3.8E-28 1.3E-32 239.0 21.1 285 93-425 69-401 (423)
110 3f9t_A TDC, L-tyrosine decarbo 100.0 2.5E-28 8.4E-33 237.7 19.4 288 96-421 73-396 (397)
111 1m32_A 2-aminoethylphosphonate 100.0 4.5E-28 1.6E-32 233.3 20.8 289 92-422 37-364 (366)
112 3kgw_A Alanine-glyoxylate amin 100.0 8.6E-28 3E-32 233.7 22.8 290 92-424 56-389 (393)
113 4eb5_A Probable cysteine desul 100.0 1.3E-27 4.5E-32 231.6 23.4 289 92-425 43-375 (382)
114 2yrr_A Aminotransferase, class 100.0 1.5E-27 5.1E-32 228.5 22.1 287 91-422 32-352 (353)
115 3ruy_A Ornithine aminotransfer 100.0 8.8E-28 3E-32 234.0 20.8 327 48-420 34-391 (392)
116 1v72_A Aldolase; PLP-dependent 100.0 2.2E-27 7.6E-32 227.8 22.8 326 48-423 5-353 (356)
117 3nnk_A Ureidoglycine-glyoxylat 100.0 2.3E-27 7.9E-32 232.3 23.3 288 93-424 47-391 (411)
118 3i4j_A Aminotransferase, class 100.0 2E-27 6.8E-32 234.4 22.9 344 48-423 27-428 (430)
119 2eo5_A 419AA long hypothetical 100.0 2.2E-27 7.6E-32 233.3 23.1 331 48-422 40-417 (419)
120 3isl_A Purine catabolism prote 100.0 4.7E-27 1.6E-31 230.4 24.3 289 92-424 44-391 (416)
121 1vef_A Acetylornithine/acetyl- 100.0 2.5E-27 8.6E-32 231.0 21.9 335 48-420 43-394 (395)
122 3cai_A Possible aminotransfera 100.0 3.3E-27 1.1E-31 231.0 22.6 322 51-418 26-404 (406)
123 4hvk_A Probable cysteine desul 100.0 1.1E-26 3.9E-31 224.7 25.6 284 94-426 45-376 (382)
124 2rfv_A Methionine gamma-lyase; 100.0 1.7E-26 5.8E-31 225.4 26.6 252 51-356 21-282 (398)
125 2aeu_A Hypothetical protein MJ 100.0 9.3E-27 3.2E-31 225.2 23.5 319 48-424 25-372 (374)
126 3f0h_A Aminotransferase; RER07 100.0 8.8E-27 3E-31 225.5 22.5 284 95-422 55-373 (376)
127 3l44_A Glutamate-1-semialdehyd 100.0 6.7E-27 2.3E-31 230.9 21.9 338 48-425 53-432 (434)
128 3dxv_A Alpha-amino-epsilon-cap 99.9 2E-27 6.7E-32 235.1 17.6 342 48-424 41-426 (439)
129 2pb2_A Acetylornithine/succiny 99.9 9E-27 3.1E-31 228.9 21.8 326 48-423 55-418 (420)
130 2dkj_A Serine hydroxymethyltra 99.9 1.6E-26 5.4E-31 226.1 22.9 335 37-422 11-387 (407)
131 1ax4_A Tryptophanase; tryptoph 99.9 4E-26 1.4E-30 227.5 26.2 338 48-423 32-441 (467)
132 2oga_A Transaminase; PLP-depen 99.9 2.4E-26 8.1E-31 224.5 22.8 315 50-424 30-397 (399)
133 1s0a_A Adenosylmethionine-8-am 99.9 2.3E-26 7.9E-31 226.7 22.5 340 48-423 41-424 (429)
134 1b9h_A AHBA synthase, protein 99.9 7.6E-26 2.6E-30 220.0 25.8 304 70-422 17-387 (388)
135 2bkw_A Alanine-glyoxylate amin 99.9 3.5E-26 1.2E-30 221.8 23.1 290 93-422 39-383 (385)
136 3k28_A Glutamate-1-semialdehyd 99.9 2.6E-26 8.8E-31 226.4 22.4 336 47-423 50-427 (429)
137 3fq8_A Glutamate-1-semialdehyd 99.9 1.7E-26 5.7E-31 227.6 20.7 335 48-422 50-426 (427)
138 2po3_A 4-dehydrase; external a 99.9 8.4E-26 2.9E-30 222.4 25.7 316 54-425 20-388 (424)
139 4a6r_A Omega transaminase; tra 99.9 5.2E-26 1.8E-30 226.1 23.3 347 48-425 48-451 (459)
140 3gju_A Putative aminotransfera 99.9 1.1E-25 3.7E-30 223.9 24.9 348 48-424 49-457 (460)
141 3nx3_A Acoat, acetylornithine 99.9 9.3E-26 3.2E-30 219.9 23.0 330 48-422 34-394 (395)
142 1zod_A DGD, 2,2-dialkylglycine 99.9 2.6E-26 8.9E-31 226.6 18.8 339 48-422 41-431 (433)
143 3ffr_A Phosphoserine aminotran 99.9 8.9E-26 3E-30 217.0 22.0 315 51-420 4-361 (362)
144 4ffc_A 4-aminobutyrate aminotr 99.9 7E-26 2.4E-30 224.6 21.7 345 48-424 62-450 (453)
145 3mc6_A Sphingosine-1-phosphate 99.9 9.8E-26 3.3E-30 226.5 22.7 322 71-425 82-439 (497)
146 3lws_A Aromatic amino acid bet 99.9 3.6E-26 1.2E-30 219.7 18.4 305 67-420 21-356 (357)
147 1ibj_A CBL, cystathionine beta 99.9 9.5E-26 3.2E-30 223.4 21.4 231 50-325 89-328 (464)
148 3a8u_X Omega-amino acid--pyruv 99.9 1.8E-25 6.1E-30 221.7 23.0 340 48-423 48-447 (449)
149 3tfu_A Adenosylmethionine-8-am 99.9 9.6E-26 3.3E-30 223.7 20.8 343 48-424 71-454 (457)
150 3vax_A Putative uncharacterize 99.9 5.5E-27 1.9E-31 228.9 11.6 286 93-422 64-399 (400)
151 3mad_A Sphingosine-1-phosphate 99.9 6.8E-25 2.3E-29 221.2 27.1 332 68-425 111-471 (514)
152 1z7d_A Ornithine aminotransfer 99.9 1.6E-25 5.6E-30 220.7 22.1 329 48-424 63-430 (433)
153 3i5t_A Aminotransferase; pyrid 99.9 6.8E-25 2.3E-29 218.6 26.3 349 48-427 52-458 (476)
154 2oat_A Ornithine aminotransfer 99.9 5.3E-25 1.8E-29 217.4 24.7 327 48-422 74-438 (439)
155 2cy8_A D-phgat, D-phenylglycin 99.9 1.6E-25 5.3E-30 222.4 20.7 332 48-425 55-437 (453)
156 2epj_A Glutamate-1-semialdehyd 99.9 2.6E-25 9E-30 219.5 22.0 329 48-423 54-431 (434)
157 1qz9_A Kynureninase; kynurenin 99.9 5.5E-25 1.9E-29 215.8 24.0 317 50-423 27-402 (416)
158 3dod_A Adenosylmethionine-8-am 99.9 5E-26 1.7E-30 225.5 16.7 343 48-424 42-444 (448)
159 3a9z_A Selenocysteine lyase; P 99.9 2.6E-25 8.8E-30 219.4 21.4 284 94-424 63-429 (432)
160 3n5m_A Adenosylmethionine-8-am 99.9 1.8E-25 6.2E-30 221.8 19.2 339 47-422 46-451 (452)
161 3pj0_A LMO0305 protein; struct 99.9 1.1E-25 3.9E-30 216.3 16.5 288 86-419 42-358 (359)
162 1w23_A Phosphoserine aminotran 99.9 4.2E-26 1.4E-30 219.4 12.6 277 94-422 50-359 (360)
163 1mdo_A ARNB aminotransferase; 99.9 5.5E-24 1.9E-28 207.1 26.8 310 51-424 9-387 (393)
164 1wyu_B Glycine dehydrogenase s 99.9 1.3E-24 4.6E-29 216.6 22.5 325 51-422 67-440 (474)
165 3oks_A 4-aminobutyrate transam 99.9 4.3E-25 1.5E-29 218.9 18.8 342 48-422 59-450 (451)
166 3hmu_A Aminotransferase, class 99.9 1.1E-24 3.7E-29 216.9 21.7 349 47-424 52-453 (472)
167 2e7u_A Glutamate-1-semialdehyd 99.9 1.2E-24 3.9E-29 214.2 21.6 323 48-419 50-423 (424)
168 3ndn_A O-succinylhomoserine su 99.9 9.1E-24 3.1E-28 206.5 27.7 212 93-357 82-299 (414)
169 3uwc_A Nucleotide-sugar aminot 99.9 2E-24 6.9E-29 208.8 22.7 313 50-423 6-371 (374)
170 1pff_A Methionine gamma-lyase; 99.9 2.9E-24 9.8E-29 204.2 23.1 246 96-394 2-270 (331)
171 4e77_A Glutamate-1-semialdehyd 99.9 2.7E-24 9.3E-29 211.9 23.4 338 48-422 51-428 (429)
172 3cog_A Cystathionine gamma-lya 99.9 5.8E-24 2E-28 207.5 25.0 278 91-425 66-400 (403)
173 1gc0_A Methionine gamma-lyase; 99.9 1.7E-23 5.7E-28 204.2 28.2 287 54-395 25-338 (398)
174 3dr4_A Putative perosamine syn 99.9 3.5E-24 1.2E-28 208.5 23.3 308 50-420 22-390 (391)
175 1cs1_A CGS, protein (cystathio 99.9 2.4E-23 8.3E-28 202.2 28.7 280 90-424 50-384 (386)
176 3acz_A Methionine gamma-lyase; 99.9 2.3E-23 7.9E-28 202.5 28.1 274 91-421 58-387 (389)
177 3n0l_A Serine hydroxymethyltra 99.9 8.2E-24 2.8E-28 207.5 23.9 279 100-423 79-389 (417)
178 2cjg_A L-lysine-epsilon aminot 99.9 1.9E-24 6.5E-29 214.1 19.5 338 48-423 52-448 (449)
179 2c0r_A PSAT, phosphoserine ami 99.9 6.8E-25 2.3E-29 211.2 15.6 256 122-422 73-360 (362)
180 2oqx_A Tryptophanase; lyase, p 99.9 6.3E-24 2.2E-28 211.6 22.9 340 48-424 30-443 (467)
181 2c81_A Glutamine-2-deoxy-scyll 99.9 5.1E-23 1.8E-27 202.1 28.9 303 69-423 15-414 (418)
182 3qhx_A Cystathionine gamma-syn 99.9 4E-23 1.4E-27 200.9 27.7 215 91-357 65-284 (392)
183 3nyt_A Aminotransferase WBPE; 99.9 1.1E-23 3.8E-28 203.2 22.7 281 87-418 30-359 (367)
184 1qgn_A Protein (cystathionine 99.9 5.9E-22 2E-26 194.7 33.7 212 93-357 115-332 (445)
185 2fnu_A Aminotransferase; prote 99.9 1.8E-23 6.3E-28 202.0 21.9 301 68-424 11-373 (375)
186 3ecd_A Serine hydroxymethyltra 99.9 6.6E-24 2.3E-28 208.6 19.0 267 122-423 99-397 (425)
187 2cb1_A O-acetyl homoserine sul 99.9 3.9E-22 1.3E-26 195.3 31.2 164 85-284 47-216 (412)
188 3e9k_A Kynureninase; kynurenin 99.9 1.6E-23 5.6E-28 208.5 21.7 292 94-423 113-461 (465)
189 1rv3_A Serine hydroxymethyltra 99.9 9.2E-24 3.1E-28 210.9 19.3 330 50-422 44-430 (483)
190 3h7f_A Serine hydroxymethyltra 99.9 8.8E-24 3E-28 209.3 19.0 266 123-424 113-415 (447)
191 2dgk_A GAD-beta, GADB, glutama 99.9 3.5E-23 1.2E-27 205.3 23.1 315 71-426 56-437 (452)
192 3frk_A QDTB; aminotransferase, 99.9 1.7E-23 5.7E-28 202.3 18.3 282 88-421 32-366 (373)
193 2vi8_A Serine hydroxymethyltra 99.9 3.7E-24 1.3E-28 209.1 13.5 281 98-424 75-388 (405)
194 1n8p_A Cystathionine gamma-lya 99.9 1.6E-22 5.5E-27 196.7 24.5 212 91-356 54-274 (393)
195 1o69_A Aminotransferase; struc 99.9 5.2E-23 1.8E-27 200.4 20.1 284 88-422 26-386 (394)
196 2fyf_A PSAT, phosphoserine ami 99.9 2.5E-23 8.4E-28 203.0 17.6 274 94-422 80-397 (398)
197 3gbx_A Serine hydroxymethyltra 99.9 4.9E-23 1.7E-27 202.1 19.8 265 123-424 98-397 (420)
198 3ju7_A Putative PLP-dependent 99.9 4.3E-22 1.5E-26 192.5 24.2 308 67-422 13-374 (377)
199 3ri6_A O-acetylhomoserine sulf 99.9 1.2E-21 4.1E-26 191.9 25.9 278 91-420 81-429 (430)
200 3nmy_A Xometc, cystathionine g 99.9 1.9E-21 6.5E-26 189.2 24.8 214 92-357 67-286 (400)
201 3bb8_A CDP-4-keto-6-deoxy-D-gl 99.9 4.1E-21 1.4E-25 189.6 25.9 179 71-284 44-232 (437)
202 3hbx_A GAD 1, glutamate decarb 99.9 1.3E-21 4.5E-26 196.1 22.5 321 69-425 68-446 (502)
203 3ke3_A Putative serine-pyruvat 99.9 1.5E-21 5.2E-26 189.0 21.6 288 95-424 38-377 (379)
204 2fq6_A Cystathionine beta-lyas 99.9 2E-20 7E-25 182.6 27.3 213 92-357 82-301 (415)
205 2x3l_A ORN/Lys/Arg decarboxyla 99.9 2.2E-21 7.7E-26 191.6 20.3 286 88-423 53-353 (446)
206 3jzl_A Putative cystathionine 99.9 1.9E-20 6.4E-25 182.1 26.1 225 86-358 54-303 (409)
207 2z67_A O-phosphoseryl-tRNA(SEC 99.9 3.5E-21 1.2E-25 191.0 20.4 284 96-420 137-455 (456)
208 1js3_A DDC;, DOPA decarboxylas 99.9 2.2E-21 7.6E-26 194.1 18.7 327 69-426 86-477 (486)
209 3ht4_A Aluminum resistance pro 99.9 4.9E-20 1.7E-24 180.6 26.9 225 93-358 66-309 (431)
210 3i16_A Aluminum resistance pro 99.9 4.9E-20 1.7E-24 179.7 26.4 227 86-358 68-320 (427)
211 2yky_A Beta-transaminase; tran 99.8 1.2E-23 3.9E-28 207.4 0.0 333 47-424 97-461 (465)
212 2ctz_A O-acetyl-L-homoserine s 99.9 4.9E-20 1.7E-24 180.9 25.5 157 93-284 59-220 (421)
213 3hvy_A Cystathionine beta-lyas 99.9 5.6E-20 1.9E-24 179.3 25.6 226 86-358 69-320 (427)
214 2okj_A Glutamate decarboxylase 99.9 2.1E-20 7.2E-25 187.8 22.6 317 71-422 107-501 (504)
215 2a7v_A Serine hydroxymethyltra 99.9 1.7E-20 5.8E-25 185.8 21.1 337 37-422 42-440 (490)
216 1ohv_A 4-aminobutyrate aminotr 99.9 9.8E-21 3.4E-25 188.4 18.1 343 47-423 60-471 (472)
217 3vp6_A Glutamate decarboxylase 99.8 4.5E-20 1.5E-24 185.3 21.7 322 70-423 109-505 (511)
218 3b8x_A WBDK, pyridoxamine 5-ph 99.8 3E-19 1E-23 173.5 25.1 272 69-395 14-334 (390)
219 2qma_A Diaminobutyrate-pyruvat 99.8 1.3E-19 4.4E-24 181.8 22.2 318 69-422 113-495 (497)
220 1c4k_A Protein (ornithine deca 99.8 6E-19 2.1E-23 182.3 22.0 308 89-423 170-566 (730)
221 3k40_A Aromatic-L-amino-acid d 99.8 2.4E-19 8.3E-24 178.4 17.8 331 70-424 87-472 (475)
222 1wyu_A Glycine dehydrogenase ( 99.8 7.7E-19 2.6E-23 173.3 21.1 274 95-420 111-437 (438)
223 4e1o_A HDC, histidine decarbox 99.8 3.7E-19 1.3E-23 177.5 18.6 324 71-423 93-478 (481)
224 2jis_A Cysteine sulfinic acid 99.8 1.5E-18 5.2E-23 174.7 22.4 321 71-422 123-514 (515)
225 2vyc_A Biodegradative arginine 99.8 4.9E-18 1.7E-22 177.1 22.2 172 93-283 206-397 (755)
226 3n75_A LDC, lysine decarboxyla 99.7 9.2E-17 3.1E-21 164.7 19.3 299 88-421 191-558 (715)
227 3m5u_A Phosphoserine aminotran 99.7 2.9E-16 1E-20 149.7 17.5 274 94-422 52-359 (361)
228 4ao9_A Beta-phenylalanine amin 99.7 2.3E-15 7.9E-20 147.2 23.8 333 47-424 84-447 (454)
229 3qm2_A Phosphoserine aminotran 99.7 2.4E-16 8.1E-21 151.8 14.9 286 92-422 72-384 (386)
230 3e77_A Phosphoserine aminotran 99.7 1.2E-16 4.2E-21 152.9 11.2 280 94-422 60-374 (377)
231 3ou5_A Serine hydroxymethyltra 99.6 1.6E-13 5.4E-18 130.7 21.8 326 50-421 54-439 (490)
232 4atq_A 4-aminobutyrate transam 99.6 1.6E-13 5.4E-18 134.8 21.7 343 47-422 61-454 (456)
233 3hl2_A O-phosphoseryl-tRNA(SEC 99.5 4.5E-13 1.5E-17 128.1 20.0 280 122-425 139-463 (501)
234 4e3q_A Pyruvate transaminase; 99.5 4.1E-12 1.4E-16 125.2 25.2 346 47-424 64-469 (473)
235 3bc8_A O-phosphoseryl-tRNA(SEC 99.4 5.3E-11 1.8E-15 115.3 26.1 211 121-356 120-337 (450)
236 4a0g_A Adenosylmethionine-8-am 99.4 5.4E-13 1.9E-17 140.1 12.7 219 183-424 577-829 (831)
237 3gh5_A HEX1, beta-hexosaminida 77.3 16 0.00054 35.9 10.8 70 157-233 205-274 (525)
238 1jak_A Beta-N-acetylhexosamini 76.7 14 0.00049 36.1 10.3 69 158-233 181-249 (512)
239 2gjx_A Beta-hexosaminidase alp 74.7 11 0.00039 36.7 9.1 65 158-233 169-233 (507)
240 4fgs_A Probable dehydrogenase 65.6 23 0.0008 31.4 8.3 100 116-223 29-133 (273)
241 1c7s_A Beta-N-acetylhexosamini 64.9 22 0.00076 37.1 9.0 117 115-233 268-418 (858)
242 3guy_A Short-chain dehydrogena 57.8 56 0.0019 27.5 9.3 95 122-222 5-101 (230)
243 1now_A Beta-hexosaminidase bet 52.5 18 0.00063 35.3 5.7 64 158-233 175-238 (507)
244 4g81_D Putative hexonate dehyd 50.1 1.2E+02 0.0042 26.2 10.2 100 116-223 9-116 (255)
245 1ofu_X SULA, hypothetical prot 48.6 85 0.0029 23.7 9.8 100 124-231 11-113 (119)
246 3rd5_A Mypaa.01249.C; ssgcid, 47.8 49 0.0017 29.2 7.5 74 122-202 20-93 (291)
247 3ozo_A N-acetylglucosaminidase 45.5 25 0.00085 34.9 5.4 64 158-233 211-274 (572)
248 3rwb_A TPLDH, pyridoxal 4-dehy 43.7 71 0.0024 27.3 7.7 96 122-223 10-110 (247)
249 3rcn_A Beta-N-acetylhexosamini 42.1 18 0.00062 35.6 3.8 76 158-233 162-242 (543)
250 4dqx_A Probable oxidoreductase 41.7 1.3E+02 0.0045 26.2 9.3 95 122-222 31-130 (277)
251 3gvc_A Oxidoreductase, probabl 41.3 1.3E+02 0.0044 26.2 9.2 96 122-223 33-133 (277)
252 3tpc_A Short chain alcohol deh 37.7 1.3E+02 0.0044 25.7 8.5 95 122-222 11-114 (257)
253 1bqc_A Protein (beta-mannanase 37.0 78 0.0027 28.1 7.1 21 214-234 64-84 (302)
254 3ppi_A 3-hydroxyacyl-COA dehyd 36.7 1.8E+02 0.0062 25.1 9.4 95 122-222 34-138 (281)
255 3gem_A Short chain dehydrogena 36.6 64 0.0022 28.0 6.3 93 122-222 31-127 (260)
256 1i4n_A Indole-3-glycerol phosp 36.6 44 0.0015 29.2 5.0 83 143-236 76-158 (251)
257 3m1a_A Putative dehydrogenase; 36.5 1.7E+02 0.0057 25.3 9.2 95 122-222 9-108 (281)
258 1yht_A DSPB; beta barrel, hydr 36.2 31 0.0011 32.0 4.2 74 157-233 39-113 (367)
259 3grp_A 3-oxoacyl-(acyl carrier 35.6 1.6E+02 0.0056 25.4 8.8 95 122-222 31-130 (266)
260 2yl5_A Beta-N-acetylhexosamini 34.3 31 0.0011 33.0 4.0 28 206-233 86-113 (442)
261 4a29_A Engineered retro-aldol 34.1 35 0.0012 29.8 3.9 78 146-234 82-159 (258)
262 3pxx_A Carveol dehydrogenase; 34.1 1.3E+02 0.0046 26.0 8.1 95 122-222 14-126 (287)
263 4e6p_A Probable sorbitol dehyd 34.1 1.9E+02 0.0066 24.6 9.0 95 122-222 12-111 (259)
264 4gqr_A Pancreatic alpha-amylas 34.0 26 0.0009 33.6 3.6 32 210-241 72-103 (496)
265 4fn4_A Short chain dehydrogena 32.7 1.4E+02 0.0048 25.8 7.8 100 116-223 7-115 (254)
266 3tzq_B Short-chain type dehydr 31.8 2.5E+02 0.0085 24.1 9.7 95 122-222 15-116 (271)
267 3bzy_B ESCU; auto cleavage pro 31.7 26 0.00089 24.7 2.2 21 216-236 28-48 (83)
268 3tsm_A IGPS, indole-3-glycerol 31.2 71 0.0024 28.2 5.5 50 177-235 127-176 (272)
269 3rjz_A N-type ATP pyrophosphat 31.0 2.5E+02 0.0086 24.0 9.9 99 121-233 9-121 (237)
270 2yl6_A Beta-N-acetylhexosamini 30.7 29 0.001 33.1 3.1 28 206-233 83-110 (434)
271 3cu2_A Ribulose-5-phosphate 3- 30.6 2.6E+02 0.0087 23.9 9.3 17 251-267 200-218 (237)
272 1ea9_C Cyclomaltodextrinase; h 30.5 59 0.002 32.3 5.5 34 209-242 213-246 (583)
273 2ya0_A Putative alkaline amylo 30.5 30 0.001 35.4 3.4 28 214-241 254-281 (714)
274 4b79_A PA4098, probable short- 30.4 1.6E+02 0.0056 25.3 7.6 96 116-223 11-106 (242)
275 3kux_A Putative oxidoreductase 30.2 1.3E+02 0.0045 27.3 7.5 72 152-236 55-126 (352)
276 1ht6_A AMY1, alpha-amylase iso 29.4 60 0.002 30.4 5.1 31 212-242 66-96 (405)
277 1g94_A Alpha-amylase; beta-alp 28.9 36 0.0012 32.5 3.5 31 212-242 62-92 (448)
278 3db2_A Putative NADPH-dependen 28.7 1.6E+02 0.0056 26.6 7.9 73 152-237 54-126 (354)
279 1lwj_A 4-alpha-glucanotransfer 28.7 46 0.0016 31.6 4.2 32 212-243 67-98 (441)
280 3h7a_A Short chain dehydrogena 28.5 2.5E+02 0.0085 23.8 8.7 94 122-222 11-112 (252)
281 3f9i_A 3-oxoacyl-[acyl-carrier 28.5 2.1E+02 0.0071 24.1 8.2 73 122-201 18-90 (249)
282 1wzl_A Alpha-amylase II; pullu 27.9 50 0.0017 32.8 4.5 34 210-243 215-248 (585)
283 4eso_A Putative oxidoreductase 27.9 1.4E+02 0.0047 25.6 6.9 95 122-222 12-111 (255)
284 4dyv_A Short-chain dehydrogena 27.9 2.9E+02 0.01 23.8 9.7 95 122-222 32-132 (272)
285 3rih_A Short chain dehydrogena 27.5 1.4E+02 0.0048 26.3 7.1 96 122-223 45-149 (293)
286 1uls_A Putative 3-oxoacyl-acyl 27.2 1E+02 0.0036 26.1 6.0 94 122-223 9-107 (245)
287 3op4_A 3-oxoacyl-[acyl-carrier 27.1 2.4E+02 0.0082 23.8 8.4 95 122-222 13-112 (248)
288 4ibo_A Gluconate dehydrogenase 26.8 3E+02 0.01 23.6 9.1 95 122-222 30-132 (271)
289 1mxg_A Alpha amylase; hyperthe 26.6 54 0.0018 31.1 4.2 30 212-241 84-113 (435)
290 1gcy_A Glucan 1,4-alpha-maltot 26.4 53 0.0018 32.1 4.2 32 212-243 90-121 (527)
291 1j0h_A Neopullulanase; beta-al 26.3 57 0.002 32.4 4.5 31 212-242 220-250 (588)
292 4hp8_A 2-deoxy-D-gluconate 3-d 26.3 2.5E+02 0.0087 24.1 8.2 98 116-223 9-109 (247)
293 3tsc_A Putative oxidoreductase 26.2 2.4E+02 0.0083 24.2 8.4 96 122-223 15-131 (277)
294 2z1k_A (NEO)pullulanase; hydro 26.1 54 0.0018 31.5 4.2 30 213-242 95-124 (475)
295 2vt1_B Surface presentation of 25.8 37 0.0013 24.5 2.2 22 215-236 27-48 (93)
296 3is3_A 17BETA-hydroxysteroid d 25.8 2.7E+02 0.0091 23.9 8.5 95 122-222 22-125 (270)
297 1wza_A Alpha-amylase A; hydrol 25.7 58 0.002 31.4 4.3 30 213-242 80-109 (488)
298 4aie_A Glucan 1,6-alpha-glucos 25.6 55 0.0019 32.0 4.2 30 212-241 77-106 (549)
299 3ohs_X Trans-1,2-dihydrobenzen 25.4 1.5E+02 0.0052 26.6 7.0 72 152-236 54-125 (334)
300 2guy_A Alpha-amylase A; (beta- 25.4 52 0.0018 31.6 4.0 29 213-241 96-124 (478)
301 1f2d_A 1-aminocyclopropane-1-c 25.0 1.7E+02 0.0058 26.5 7.2 17 156-172 118-134 (341)
302 1jae_A Alpha-amylase; glycosid 24.9 50 0.0017 31.7 3.7 32 212-243 72-103 (471)
303 1tqj_A Ribulose-phosphate 3-ep 24.9 3.1E+02 0.011 23.1 8.7 31 205-235 143-180 (230)
304 3t7y_A YOP proteins translocat 24.9 35 0.0012 24.8 1.9 21 216-236 43-63 (97)
305 2ya1_A Putative alkaline amylo 24.8 43 0.0015 35.9 3.4 28 214-241 561-588 (1014)
306 1oft_A SULA, hypothetical prot 24.8 2.7E+02 0.0091 22.3 11.3 82 142-231 74-155 (161)
307 4dmm_A 3-oxoacyl-[acyl-carrier 24.8 2.9E+02 0.01 23.7 8.6 95 122-222 32-135 (269)
308 2nu8_A Succinyl-COA ligase [AD 24.7 1.1E+02 0.0036 27.2 5.6 71 153-236 53-123 (288)
309 1fob_A Beta-1,4-galactanase; B 24.6 91 0.0031 28.3 5.2 36 205-240 50-85 (334)
310 3ctl_A D-allulose-6-phosphate 24.6 3.2E+02 0.011 23.1 9.5 19 217-235 154-174 (231)
311 1ua7_A Alpha-amylase; beta-alp 24.5 52 0.0018 31.1 3.7 32 212-243 72-103 (422)
312 3e18_A Oxidoreductase; dehydro 24.5 1.5E+02 0.0052 27.0 6.9 73 151-236 52-124 (359)
313 2jo8_A Serine/threonine-protei 24.4 1.3E+02 0.0045 18.8 4.2 25 330-354 25-49 (51)
314 2dh2_A 4F2 cell-surface antige 24.3 60 0.0021 30.7 4.1 29 213-241 80-108 (424)
315 3ovp_A Ribulose-phosphate 3-ep 24.2 3.2E+02 0.011 23.0 9.8 28 208-235 148-176 (228)
316 1tks_A 3,4-dihydroxy-2-butanon 24.2 72 0.0025 26.7 4.0 36 195-233 159-194 (204)
317 4fb5_A Probable oxidoreductase 24.1 1.7E+02 0.0057 26.7 7.2 71 153-236 83-153 (393)
318 4gkb_A 3-oxoacyl-[acyl-carrier 24.1 3.1E+02 0.01 23.7 8.4 100 116-223 7-112 (258)
319 3e9m_A Oxidoreductase, GFO/IDH 24.1 1.9E+02 0.0066 25.8 7.4 73 152-237 55-127 (330)
320 2aaa_A Alpha-amylase; glycosid 24.0 62 0.0021 31.1 4.2 31 212-242 95-125 (484)
321 1ud2_A Amylase, alpha-amylase; 24.0 51 0.0017 31.7 3.6 30 212-241 78-107 (480)
322 3qlj_A Short chain dehydrogena 23.9 3.1E+02 0.011 24.3 8.8 96 122-223 31-144 (322)
323 3c01_E Surface presentation of 23.7 38 0.0013 24.7 1.9 21 216-236 28-48 (98)
324 3moi_A Probable dehydrogenase; 23.6 1.7E+02 0.0059 26.9 7.1 21 213-233 100-120 (387)
325 1hvx_A Alpha-amylase; hydrolas 23.4 52 0.0018 32.1 3.5 30 212-241 79-108 (515)
326 3bh4_A Alpha-amylase; calcium, 23.4 53 0.0018 31.6 3.6 30 212-241 76-105 (483)
327 3evn_A Oxidoreductase, GFO/IDH 23.1 2E+02 0.007 25.6 7.4 71 153-236 56-126 (329)
328 2qlc_A DNA repair protein RADC 23.0 76 0.0026 24.3 3.6 58 180-241 54-121 (126)
329 2o23_A HADH2 protein; HSD17B10 22.9 3.4E+02 0.012 22.8 10.2 76 122-203 16-94 (265)
330 1hjs_A Beta-1,4-galactanase; 4 22.9 1E+02 0.0034 28.1 5.1 36 205-240 50-85 (332)
331 3n74_A 3-ketoacyl-(acyl-carrie 22.8 2.4E+02 0.0083 23.8 7.6 95 122-222 13-113 (261)
332 1wpc_A Glucan 1,4-alpha-maltoh 22.8 55 0.0019 31.5 3.6 30 212-241 80-109 (485)
333 3vc3_A Beta-cyanoalnine syntha 22.8 48 0.0016 30.4 3.0 50 122-172 92-141 (344)
334 3m07_A Putative alpha amylase; 22.7 77 0.0026 31.7 4.7 33 211-243 199-231 (618)
335 3v5n_A Oxidoreductase; structu 22.6 2.4E+02 0.0081 26.3 7.9 73 152-237 93-170 (417)
336 3uve_A Carveol dehydrogenase ( 22.6 2.8E+02 0.0096 23.9 8.1 28 122-150 15-42 (286)
337 3oqb_A Oxidoreductase; structu 22.5 2.8E+02 0.0097 25.3 8.4 72 152-236 71-142 (383)
338 3t7c_A Carveol dehydrogenase; 22.5 3.9E+02 0.013 23.3 10.2 95 122-222 32-147 (299)
339 3gaf_A 7-alpha-hydroxysteroid 22.5 3.5E+02 0.012 22.8 9.2 95 122-222 16-117 (256)
340 4fc7_A Peroxisomal 2,4-dienoyl 22.4 3.7E+02 0.013 23.1 10.0 95 122-222 31-134 (277)
341 4had_A Probable oxidoreductase 22.3 1.3E+02 0.0044 27.3 5.8 72 153-237 75-146 (350)
342 2ew8_A (S)-1-phenylethanol deh 22.3 3.5E+02 0.012 22.7 10.0 95 122-222 11-111 (249)
343 2wc7_A Alpha amylase, catalyti 22.1 57 0.0019 31.5 3.5 30 213-242 101-130 (488)
344 3uuw_A Putative oxidoreductase 21.9 2.2E+02 0.0076 25.1 7.3 70 153-237 57-126 (308)
345 3ged_A Short-chain dehydrogena 21.9 2.8E+02 0.0097 23.7 7.7 95 122-223 6-105 (247)
346 3i23_A Oxidoreductase, GFO/IDH 21.7 1.8E+02 0.0063 26.2 6.8 71 153-236 54-124 (349)
347 1hdc_A 3-alpha, 20 beta-hydrox 21.6 3.7E+02 0.013 22.7 8.7 95 122-222 9-108 (254)
348 4ew6_A D-galactose-1-dehydroge 21.6 1.3E+02 0.0044 27.1 5.6 73 152-237 68-141 (330)
349 1vhx_A Putative holliday junct 21.4 2.4E+02 0.0082 22.1 6.5 59 178-238 40-101 (150)
350 4h1h_A LMO1638 protein; MCCF-l 21.2 1.6E+02 0.0055 26.6 6.1 65 140-206 9-89 (327)
351 1zja_A Trehalulose synthase; s 20.9 77 0.0026 31.2 4.2 31 212-242 77-107 (557)
352 3t4x_A Oxidoreductase, short c 20.8 3.9E+02 0.013 22.7 9.5 94 122-222 14-114 (267)
353 4hkt_A Inositol 2-dehydrogenas 20.8 2.4E+02 0.0082 25.1 7.3 72 153-237 52-123 (331)
354 2p2s_A Putative oxidoreductase 20.7 2.9E+02 0.0098 24.7 7.9 72 152-236 54-125 (336)
355 1hxh_A 3BETA/17BETA-hydroxyste 20.7 3.8E+02 0.013 22.5 10.1 95 122-222 10-109 (253)
356 3r1i_A Short-chain type dehydr 20.6 1.8E+02 0.0062 25.2 6.3 95 122-222 36-138 (276)
357 3tla_A MCCF; serine protease, 20.5 1.8E+02 0.006 26.9 6.3 72 140-213 40-127 (371)
358 1xp8_A RECA protein, recombina 20.5 4.9E+02 0.017 23.7 9.5 17 217-233 190-206 (366)
359 3pgx_A Carveol dehydrogenase; 20.5 3.2E+02 0.011 23.5 8.0 28 122-150 19-46 (280)
360 3tjr_A Short chain dehydrogena 20.3 4.3E+02 0.015 23.0 8.9 95 122-222 35-137 (301)
361 3lyl_A 3-oxoacyl-(acyl-carrier 20.3 3.8E+02 0.013 22.3 9.1 95 122-222 9-111 (247)
362 1ytl_A Acetyl-COA decarboxylas 20.2 1.8E+02 0.0062 23.5 5.6 46 179-234 21-67 (174)
363 1vl8_A Gluconate 5-dehydrogena 20.2 4E+02 0.014 22.7 9.4 95 122-222 25-128 (267)
364 3tfo_A Putative 3-oxoacyl-(acy 20.2 2.8E+02 0.0097 23.8 7.4 96 122-223 8-111 (264)
365 1m7x_A 1,4-alpha-glucan branch 20.1 68 0.0023 32.1 3.7 31 211-241 201-231 (617)
366 2glx_A 1,5-anhydro-D-fructose 20.0 2.7E+02 0.0091 24.8 7.5 72 152-236 50-121 (332)
No 1
>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}
Probab=100.00 E-value=1.1e-61 Score=473.34 Aligned_cols=399 Identities=40% Similarity=0.651 Sum_probs=346.8
Q ss_pred cccccccccCCCCCCchhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhc-CCCCCCCCCCcccHHHHH
Q 013839 21 RTVGWWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIA-GSEFLESISASVSTKMVE 99 (435)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Y~~~~g~~~lr~ 99 (435)
.+-+.|++++..|+++++.+.++++++.++ +|||++|.|.|++|.+++.+.|+++...+. .+..++|.|..|+++||+
T Consensus 16 ~~~~~~~~v~~~p~d~i~~l~~~~~~d~~~-kinLgvG~y~d~~g~~~vl~~Vk~A~~~~~~~~~~~~Y~p~~G~p~lr~ 94 (420)
T 4h51_A 16 TTAERWQKIQAQAPDVIFDLAKRAAAAKGP-KANLVIGAYRDEQGRPYPLRVVRKAEQLLLDMNLDYEYLPISGYQPFID 94 (420)
T ss_dssp CHHHHHHTCCCCCCCHHHHHHHHHHHCCSS-CEECCSCCCBCTTSCBCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHH
T ss_pred hhhHHHhCCCCCCCChHHHHHHHHhcCCCC-CEEeecCcccCCCCCCCCCHHHHHHHHHHhcCCCCCCCCCcCChHHHHH
Confidence 345689999999999999999999887666 999999999999999999999998887765 455678999999999999
Q ss_pred HHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHH--HhCCCCEEEEcCCCChhhHHHHhhCCCCee-eeeecCCC
Q 013839 100 ESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQR--RFHPESHIYFPDPTWSNHHNIWRDAQIPER-TYHYYDPD 176 (435)
Q Consensus 100 ~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~--~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~-~v~~~~~~ 176 (435)
++++++++.+.. .+++..+.|.||++|+..++.++. +++|||+|++++|+|++|..+++..|++.+ .++..+++
T Consensus 95 aia~~~~g~~~~---~~~~~~~qt~ggtga~~~a~~~l~~~~~~pgd~V~ip~P~w~~y~~i~~~aG~~~V~~~~~~~~~ 171 (420)
T 4h51_A 95 EAVKIIYGNTVE---LENLVAVQTLSGTGAVSLGAKLLTRVFDAETTPIYLSDPTWPNHYGVVKAAGWKNICTYAYYDPK 171 (420)
T ss_dssp HHHHHHHC---C---GGGEEEEEEEHHHHHHHHHHHHHTTTSCTTTSCEEEEESCCTHHHHHHHHTTCCCEEEEECEEGG
T ss_pred HHHHHhcCCCcc---ccccceeeecCchHHHHHHHHHHHHhcCCCCCEEEEecCCchhHHHHHHHcCCeEEEeecccccc
Confidence 999999876543 456666689999999988764443 346999999999999999999999999754 55555566
Q ss_pred CCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhh
Q 013839 177 SKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFL 256 (435)
Q Consensus 177 ~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~ 256 (435)
++++|.+.+.+.+...+++++++++++||||||.+++.++|++|+++|+++++++|+|++|++|.+++.+.+...++.+.
T Consensus 172 ~~~~d~~~~~~~l~~~~~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~ 251 (420)
T 4h51_A 172 TVSLNFEGMKKDILAAPDGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFA 251 (420)
T ss_dssp GTEECHHHHHHHHHHSCSSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHH
T ss_pred ccCCCHHHHHHHHhccCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHH
Confidence 78899999999988777788999999999999999999999999999999999999999999999986544555666667
Q ss_pred hcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHH
Q 013839 257 EDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVK 336 (435)
Q Consensus 257 ~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~ 336 (435)
+..++++++.||||.|+++|||+||+++.+...+...++...+....+..+++++..+|.++..++.++.+..+|+++++
T Consensus 252 ~~~~~~i~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~~~~~ 331 (420)
T 4h51_A 252 RRGIEVLLAQSFSKNMGLYSERAGTLSLLLKDKTKRADVKSVMDSLIREEYTCPPAHGARLAHLILSNNELRKEWEAELS 331 (420)
T ss_dssp HTTCCCEEEEECTTTSCCGGGCEEEEEEECSCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred hhCceEEEEeccccccccccCceEEEEecccCHHHHHHHHHHHHHhhhcccCcchHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 77889999999999999999999999876655665666777788788888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCCCHHHHHHHhhhccEEEeCCCcEEeccCCCCcHHHHHHHH
Q 013839 337 IMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLTPYQVDRLAKEFHIYMTQDGRISMAGVTTGNVNYLANAI 416 (435)
Q Consensus 337 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ll~~~gI~i~pggRis~~~~~~e~i~~~~~~l 416 (435)
.++++++++|+.+.+.|+++|.+..|.++.+++|||.|++++.++++.| +++||++.|+||||+++++++++++++++|
T Consensus 332 ~m~~r~~~~R~~l~~~L~~~g~~~~~~~i~~q~GmF~~~gls~e~v~~L-~e~~Vy~~~~gRis~Agl~~~ni~~~a~aI 410 (420)
T 4h51_A 332 AMAERIRTMRRTVYDELLRLQTPGSWEHVINQIGMFSFLGLSKAQCEYC-QNHNIFITVSGRANMAGLTHETALMLAQTI 410 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSSCCTHHHHCCSSEEECCCCHHHHHHH-HHTTEECCTTCEEEGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCeecCCCceEEecCcCHHHHHHH-HhCCEEEcCCCEEEeccCCHHHHHHHHHHH
Confidence 9999999999999999999998888988999999999999999988755 789999999999999988999999999999
Q ss_pred HHHHHhhh
Q 013839 417 HEVTRSEQ 424 (435)
Q Consensus 417 ~~~l~~~~ 424 (435)
.+++++..
T Consensus 411 ~~vvr~i~ 418 (420)
T 4h51_A 411 NDAVRNVN 418 (420)
T ss_dssp HHHHC---
T ss_pred HHHHHHhh
Confidence 99997754
No 2
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0
Probab=100.00 E-value=1.5e-60 Score=465.25 Aligned_cols=394 Identities=26% Similarity=0.461 Sum_probs=333.7
Q ss_pred cccccccCCCCCCchhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHh--cCCCCCCCCCCcccHHHHHH
Q 013839 23 VGWWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKI--AGSEFLESISASVSTKMVEE 100 (435)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Y~~~~g~~~lr~~ 100 (435)
.|+|++++..++++++.+.++++++..+++|||++|.|+++++.+++++.++++.. + ..+...+|.+..|.++||++
T Consensus 2 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~~~~~~Y~~~~G~~~lr~a 80 (405)
T 3k7y_A 2 DKLLSSLENIEVDNILKTAREFKEDTCEEKINLSIGVCCNDDGDLHIFDSVLNADK-LVTENYKEKPYLLGNGTEDFSTL 80 (405)
T ss_dssp CCGGGGCCCCCCCHHHHHHHHHTTSSCSSCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHHCCCCCCCTTSSCHHHHHH
T ss_pred cchhhcCCCCCCChHHHHHHHHhcCCCcCcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCCCCCCCCCCCCCcHHHHHH
Confidence 46899999999999999999998877789999999997677766677778887766 5 23346789999999999999
Q ss_pred HHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhC--CCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCC
Q 013839 101 SVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFH--PESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSK 178 (435)
Q Consensus 101 ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~--~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~ 178 (435)
+++++.+.+...+.++++..++|.|+++|+.++ +..++. | |+|++++|+|++|...++..|++++.+|+.+++++
T Consensus 81 ia~~~~~~~~~~~~~~~i~i~~t~G~~~al~~~--~~~l~~~~~-d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~ 157 (405)
T 3k7y_A 81 TQNLIFGNNSKYIEDKKICTIQCIGGTGAIFVL--LEFLKMLNV-ETLYVTNPPYINHVNMIESRGFNLKYINFFDYNLI 157 (405)
T ss_dssp HHHHHHCSSCTTTTTTCEEEEEEEHHHHHHHHH--HHHHHTTTC-CEEEEESSCCHHHHHHHHTTTCEEEEECCEETTTT
T ss_pred HHHHHcCCCCccccccceEEEEcCchHHHHHHH--HHHHHhcCC-CEEEEeCCCCHhHHHHHHHcCCeEEEEeccccccC
Confidence 999998777665666765333899999999998 444444 8 99999999999999999999999999998555578
Q ss_pred CcChHhHHHHhhcCCCCcEEEEeCC-CCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhh
Q 013839 179 SLDFAALMDDIKNAPDSSFFLLHPS-AHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLE 257 (435)
Q Consensus 179 ~~d~e~l~~~i~~~~~~~~~v~~~~-p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~ 257 (435)
++|++.|++++.+. ++++++++++ ||||||.+++.+++++|+++|++|+++||+||+|.++.+++.+.+..++..+.+
T Consensus 158 ~~d~~~l~~~l~~~-~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~ 236 (405)
T 3k7y_A 158 DINYDLFLNDLRNI-PNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEE 236 (405)
T ss_dssp EECHHHHHHHHHHS-CSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHT
T ss_pred CcCHHHHHHHHHhC-CCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHh
Confidence 99999999999754 2455666654 599999999999999999999999999999999999998643334456666655
Q ss_pred cCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHH
Q 013839 258 DEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKI 337 (435)
Q Consensus 258 ~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~ 337 (435)
..+++|+++||||+|+++|||+||+++++++++..+.+.+.+.+..+..+.+++.++|.++..+|.++.+.+.|.++++.
T Consensus 237 ~~~~~i~~~S~SK~~~l~GlRiG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~l~~ 316 (405)
T 3k7y_A 237 KNIAFSVCQSFSKNMSLYGERAGALHIVCKNQEEKKIVFNNLCFIVRKFYSSPVIHTNRILCQLLNNQNLKLNWIKELSQ 316 (405)
T ss_dssp TTCCEEEEEECTTTSCCTTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred cCCcEEEEeeCCccCCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 56899999999999999999999997545577755556666666666677788899999999999988777888899999
Q ss_pred HHHHHHHHHHHHHHHHH----hhCCCCCccccccCcceeEecCCCHHHHHHHhhhccEEEeCCCcEEeccCCCCcHHHHH
Q 013839 338 MADRIQRKRTTLRQNLE----KLGSSLNWEHITNQLGMFCFSGLTPYQVDRLAKEFHIYMTQDGRISMAGVTTGNVNYLA 413 (435)
Q Consensus 338 ~~~~~~~~~~~l~~~l~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ll~~~gI~i~pggRis~~~~~~e~i~~~~ 413 (435)
++++++++|+.+.+.|+ ++|.+..|.+.++++|||+|++++.+++.++ +++||.+.|+||||+++.+++++++++
T Consensus 317 ~~~~~~~~R~~l~~~L~~~~~~~g~~~~~~~~~p~gg~f~~~~l~~~~~~~L-~~~gV~v~p~~Ris~a~~~~~~i~~~~ 395 (405)
T 3k7y_A 317 LSQRITNNRILFFNKLETYQKKYNLNYDWNVYKKQRGLFSFVPLLAKIAEHL-KTHHIYIINNGRINVSGITKNNVDYIA 395 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGTCCCCGGGGSSCCSSEEECGGGGGGTTTT-TTTTEECCTTSEEEGGGCCTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhcCCCCCCccccCCceEEEecCCCHHHHHHH-HHCCEeecCCCeEEEeccCHHHHHHHH
Confidence 99999999999999999 8886666888999999999999977777777 889999999999999887899999999
Q ss_pred HHHHHHHHh
Q 013839 414 NAIHEVTRS 422 (435)
Q Consensus 414 ~~l~~~l~~ 422 (435)
++|+++++.
T Consensus 396 ~~i~~~~~~ 404 (405)
T 3k7y_A 396 DKICLSLSQ 404 (405)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhh
Confidence 999998864
No 3
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Probab=100.00 E-value=5.6e-55 Score=433.65 Aligned_cols=405 Identities=39% Similarity=0.679 Sum_probs=347.3
Q ss_pred ccccccccccCCCCCCchhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhc---CCCCCCCCCCcccHH
Q 013839 20 SRTVGWWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIA---GSEFLESISASVSTK 96 (435)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Y~~~~g~~~ 96 (435)
..++++|++++..++++++.+.++++.+.++++|+|++|.|.|+++++++.+.+++++..+. .....+|.+..|.++
T Consensus 19 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~~~~G~~~ 98 (448)
T 3meb_A 19 PGSMSVFSGFPASPPDAILNLTVLYNADTNPKKVNLGVGAYRDESGKPWILPAVKEAEAIISSDLSKYNKEYPPVAGFPL 98 (448)
T ss_dssp ---CCTTTTCCCCCCCTTHHHHHHHHHCCCTTCEEESSCCCCCTTSCCCCCHHHHHHHHHHHHCTTTTCCSCCCTTCCHH
T ss_pred cchhhHHhcCCCCCCChHHHHHHHHHhCCCCCeEEeecccccCCCCCEechHHHHHHHHHHhhcccCCCCCCCCCcchHH
Confidence 34678999999999999999999998877788999999999888888888888888866664 233677999999999
Q ss_pred HHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHh----hCCCCeeeeee
Q 013839 97 MVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWR----DAQIPERTYHY 172 (435)
Q Consensus 97 lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~----~~g~~~~~v~~ 172 (435)
+|+++++++++.+..++++++|..+.|+||++|+.+++.+++++.+||+|++++|+|.++...++ ..|++++.+++
T Consensus 99 lr~~ia~~l~g~~~~~~~~~~i~~~~t~ggt~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~~~~~G~~v~~~~~ 178 (448)
T 3meb_A 99 FLEAAQFLMFGKDSKAAQEGRIASCQSLSGTGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTY 178 (448)
T ss_dssp HHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCTHHHHHHHHHHCTTTSCCEEECC
T ss_pred HHHHHHHHhcCCCccccCcCcEEEEECCcHHHHHHHHHHHHHHhCCCCEEEECCCCCHhHHHHHHhhHHhCCCeEEEEec
Confidence 99999999977765555678998222999999999866577788999999999999999999999 99999999998
Q ss_pred cCCC-CCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHH
Q 013839 173 YDPD-SKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQA 251 (435)
Q Consensus 173 ~~~~-~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~ 251 (435)
.+++ ++++|++++++.+++.+++++++++++||||||.+++.+++++|+++|++||+++|+||+|+++.+++.+.+.++
T Consensus 179 ~~~~~~~~~d~e~l~~~l~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~ 258 (448)
T 3meb_A 179 LRKDGELEIDFSNTKKDIQSAPEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFA 258 (448)
T ss_dssp BCTTSCSSBCHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHH
T ss_pred cccccCCCcCHHHHHHHHHhCCCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchh
Confidence 5555 689999999999986545688999999999999999999999999999999999999999999998753334456
Q ss_pred HHHhhhcCCeEEEEecccccccccCCcccEEEEEe--------cChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhC
Q 013839 252 IRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILC--------VDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILS 323 (435)
Q Consensus 252 ~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~ 323 (435)
+..+.+..++++++.|+||.||++|+|+||+.+++ ++++..+.+++.+....+..+.+++.++|.++..+|.
T Consensus 259 ~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~ 338 (448)
T 3meb_A 259 VRMFVDAGVEVLVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQIRKTWSMSAIHGAYIVQVIVH 338 (448)
T ss_dssp HHHHHHTTCCEEEEEECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHT
T ss_pred HHHHhhcCCcEEEEecccccCCCccccceeeeeeeccccccccCCHHHHHHHHHHHHHHHhcccCCccHHHHHHHHHHhc
Confidence 66666667899999999999999999999984334 4564444588888887778888999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-----CccccccCcceeEecCCCHHHHHHHhhhccEEEeCC-C
Q 013839 324 DPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSL-----NWEHITNQLGMFCFSGLTPYQVDRLAKEFHIYMTQD-G 397 (435)
Q Consensus 324 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~~ll~~~gI~i~pg-g 397 (435)
+..+.+.|.+++++.+++++++++.+.+.|++++.+. .+.+..+++|+|.|++++.+++..+++++||.+.|| |
T Consensus 339 ~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ll~~~gV~v~~G~g 418 (448)
T 3meb_A 339 DKRLLQMFYDNVKEMSARIHRMRSLLHASLAKRKTPGPGSKGTWDHILTAIGMFTFTGLTPEHVDYLKEKWSIYLVKAGG 418 (448)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSTTTCCCTHHHHCCSSEEECCCCHHHHHHHHHHHCEEECSGGG
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCcccccceeCCCceEEEecCCCHHHHHHHHHhCCEEEeCCCc
Confidence 9888888888899999999999999999999986554 377788999999999999988988888899999995 6
Q ss_pred cEEeccCCCCcHHHHHHHHHHHHHhhh
Q 013839 398 RISMAGVTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 398 Ris~~~~~~e~i~~~~~~l~~~l~~~~ 424 (435)
|||++..+++++++++++|+++++++.
T Consensus 419 Ris~a~~~~~~i~~~~~~l~~~l~~~~ 445 (448)
T 3meb_A 419 RMSMCGLTESNCDYVAEAIHDAVTKLP 445 (448)
T ss_dssp EEEGGGCCTTTHHHHHHHHHHHHHHSC
T ss_pred EEEEecCCHHHHHHHHHHHHHHHHhcc
Confidence 999987788899999999999987543
No 4
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Probab=100.00 E-value=7.4e-54 Score=422.48 Aligned_cols=397 Identities=37% Similarity=0.639 Sum_probs=334.2
Q ss_pred cccccccccCCCCCCchhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHh-cCCCCCCCCCCcccHHHHH
Q 013839 21 RTVGWWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKI-AGSEFLESISASVSTKMVE 99 (435)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Y~~~~g~~~lr~ 99 (435)
.+++++++++..++++++.+...+.++..+++|||+.|.|.++++.+++.+.+.+++... ..+...+|++..|.+++|+
T Consensus 20 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~ 99 (420)
T 4f4e_A 20 GSMSLFSAVELAPRDPILGLNEAFNADTRPTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEAGLPRGYLPIDGIAAYDA 99 (420)
T ss_dssp --CCTTTTCCCCCCCHHHHHHHHHHHCCCSSCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTCCCCCCCCTTCCHHHHH
T ss_pred cccCHhhcCCcCCCChHHHHHHHHHhcCCCCcEEeeeeeeECCCCCccCcHHHHHHHHHHhccCCCCCCCCCCCcHHHHH
Confidence 466789999999999999999988877778999999997655555555555555555444 3434678999999999999
Q ss_pred HHHHhHcCCCCccccCC--CeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCC
Q 013839 100 ESVKLVYGKDSDVVKEG--RSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDS 177 (435)
Q Consensus 100 ~ia~~l~~~~~~~~~~~--~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~ 177 (435)
++++++.+.....++++ +++ +|+||++|+.+++.+++++.+||+|++++|+|.++...++..|++++.++..++++
T Consensus 100 ~ia~~l~~~~~~~~~~~~~~i~--~t~G~t~al~~~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~ 177 (420)
T 4f4e_A 100 SVQKLLLGDDSPLIAAGRVVTA--QALGGTGALKIGADFLRTLNPKAKVAISDPSWENHRALFDMAGFEVVAYPYYDAKT 177 (420)
T ss_dssp HHHHHHHCTTCHHHHTTCEEEE--EEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHTTCCEEEEECEETTT
T ss_pred HHHHHhcCCCccccccCceEEE--ECCccHHHHHHHHHHHHHhCCCCEEEEeCCCcHhHHHHHHHcCCeEEEeeeecccc
Confidence 99999977665444577 777 99999999999866667789999999999999999999999999999999855567
Q ss_pred CCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhh
Q 013839 178 KSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLE 257 (435)
Q Consensus 178 ~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~ 257 (435)
+++|++.+++.+++.+++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++ +.+..++..+.+
T Consensus 178 ~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~-~~~~~~~~~~~~ 256 (420)
T 4f4e_A 178 NGVNFDGMLAALNGYEPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESI-EADAAAVRLFAA 256 (420)
T ss_dssp TEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCT-TGGGHHHHHHHH
T ss_pred CccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCc-chhhHHHHHHHh
Confidence 8999999999998665678999999999999999999999999999999999999999999999863 234566666666
Q ss_pred cCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHH
Q 013839 258 DEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKI 337 (435)
Q Consensus 258 ~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~ 337 (435)
..+++++++|+||.+|++|+|+||+++++++++..+.+...++...+..+.+++.++|.++..++.+..+.+.|.+++++
T Consensus 257 ~~~~~i~~~S~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 336 (420)
T 4f4e_A 257 ANLNVFVSSSFSKSFSLYGERVGALSIITDSKDEAARVLSQLKRVIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGE 336 (420)
T ss_dssp TTCCEEEEEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred cCCCEEEEEeCCccCcCcCCCcEEEEEEcCCHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 67899999999999999999999997445466644455556666555677788999999999999988877778889999
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCCCHHHHHHHhhhccEEEeCCCcEEeccCCCCcHHHHHHHHH
Q 013839 338 MADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLTPYQVDRLAKEFHIYMTQDGRISMAGVTTGNVNYLANAIH 417 (435)
Q Consensus 338 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ll~~~gI~i~pggRis~~~~~~e~i~~~~~~l~ 417 (435)
.+++++++++.+.+.|++++.+.++.+..+++|+|+|++++.+.+..+++++||.+.|++|||++..+++++++++++|+
T Consensus 337 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~gI~v~~~~Ris~~~~~~~~i~~~~~~l~ 416 (420)
T 4f4e_A 337 MRDRIRAMRNGLVERLKAAGIERDFSFINAQRGMFSYSGLTSAQVDRLREEFGIYAVSTGRICVAALNTRNLDVVANAIA 416 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSSCCTHHHHSCSSEEECCCCHHHHHHHHHHHCEECCTTSEEEGGGCCTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCceeECCCccEEEEeCCCHHHHHHHHHhCCEEecCCCeEEEecCCHHHHHHHHHHHH
Confidence 99999999999999999885333477888899999999999888888888899999999999998778899999999999
Q ss_pred HHH
Q 013839 418 EVT 420 (435)
Q Consensus 418 ~~l 420 (435)
+++
T Consensus 417 ~~l 419 (420)
T 4f4e_A 417 AVL 419 (420)
T ss_dssp HHH
T ss_pred HHh
Confidence 875
No 5
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=100.00 E-value=8.5e-54 Score=419.47 Aligned_cols=397 Identities=51% Similarity=0.888 Sum_probs=335.9
Q ss_pred ccccccCCCCCCchhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhc-CCCCCCCCCCcccHHHHHHHH
Q 013839 24 GWWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIA-GSEFLESISASVSTKMVEESV 102 (435)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Y~~~~g~~~lr~~ia 102 (435)
|+|++++..+++.++...+.++.+.++++|+|+.|.|+|..+++.+.+.+++++..+. .....+|.+..|.+++|++++
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia 81 (401)
T 7aat_A 2 SWWSHVEMGPPDPILGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASA 81 (401)
T ss_dssp CSSTTCCCCCCCHHHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHH
T ss_pred ChhhcCCCCCCChhHHHHHHHhhCCCCCceeeeeeeEECCCCCEechHHHHHHHHHhcccccccCCCCCCCCHHHHHHHH
Confidence 6788999999999999999998877788999999998777766666667777666654 223677999999999999999
Q ss_pred HhHcCCCCccccCCCeeeEecCCchhHHHHHHH-HHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcC
Q 013839 103 KLVYGKDSDVVKEGRSAGVQALSGTGACRLFAE-FQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLD 181 (435)
Q Consensus 103 ~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~-~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d 181 (435)
+++.+..+..+++++|..+.|+||++|+.++.. +..++.+||+|++++|+|.++...++..|++++.+++.+++++++|
T Consensus 82 ~~~~~~~~~~~~~~~i~~v~t~G~~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d 161 (401)
T 7aat_A 82 ELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLD 161 (401)
T ss_dssp HHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEEC
T ss_pred HHhcCCCccccccCceEEEecCcchHHHHHHHHHHHHhccCCCEEEEcCCCchhHHHHHHHcCCeeEeeeeeccccCccC
Confidence 999776666667889873349999999998852 2334589999999999999999999999999999998555578999
Q ss_pred hHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCe
Q 013839 182 FAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHL 261 (435)
Q Consensus 182 ~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~ 261 (435)
++.+++.+++..++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++.+.+..++..+.+..++
T Consensus 162 ~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~ 241 (401)
T 7aat_A 162 FTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGID 241 (401)
T ss_dssp HHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCC
T ss_pred HHHHHHHHHhCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCCc
Confidence 99998888765467899999999999999999999999999999999999999999999986422133455555566789
Q ss_pred EEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q 013839 262 IGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADR 341 (435)
Q Consensus 262 ~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~ 341 (435)
+++++|+||.||++|+|+||+++...+++..+.+...+....+..+.+++...|.+++.++.++.+.+.|.+++++.+++
T Consensus 242 ~i~~~S~sK~~~~~G~RiG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 321 (401)
T 7aat_A 242 VVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADR 321 (401)
T ss_dssp CEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCCcccccccCceEEEEEEeCCHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999975344666555567777777677778888999999998999888877788899999999
Q ss_pred HHHHHHHHHHHHHhhCCCCCccccccCcceeEecCCCHHHHHHHhhhccEEEeCCCcEEeccCCCCcHHHHHHHHHHHH
Q 013839 342 IQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLTPYQVDRLAKEFHIYMTQDGRISMAGVTTGNVNYLANAIHEVT 420 (435)
Q Consensus 342 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ll~~~gI~i~pggRis~~~~~~e~i~~~~~~l~~~l 420 (435)
++++++.+.+.|++++.+..+.+..+++|+|.|++++.+++..+++++||.+.|++|||++..+++++++++++|++++
T Consensus 322 ~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~~~Ris~~~~~~~~i~~~~~~l~~~~ 400 (401)
T 7aat_A 322 IISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLKPEQVERLTKEFSIYMTKDGRISVAGVASSNVGYLAHAIHQVT 400 (401)
T ss_dssp HHHHHHHHHHHHHHTTCCSCCHHHHHCCSSEEECCCCHHHHHHHHHHHCEECCTTCEEEGGGCCTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCCceecCCcceEEecCCCHHHHHHHHHhCCEeccCCCeEEeccCChhhHHHHHHHHHHHh
Confidence 9999999999999987555577788999999999999888888888899999999999998778888999999998875
No 6
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}
Probab=100.00 E-value=9.3e-54 Score=420.34 Aligned_cols=399 Identities=40% Similarity=0.698 Sum_probs=320.1
Q ss_pred ccccccccccccCCCCCCchhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHH
Q 013839 18 TSSRTVGWWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKM 97 (435)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~l 97 (435)
+++---+++++++..++++++.+.++++.+..+++|+|++|.|++.++++.+.+.++++ ......+|.+..|.++|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~v~~a~~~a----~~~~~~~y~~~~g~~~l 84 (409)
T 4eu1_A 9 MGTLEAQTQGPGSMGKPDPILGLGQDFRMDPAKRKVNLSIGVYRDDADQPFVLECVKQA----TLGTNMDYAPVTGIASF 84 (409)
T ss_dssp ------------------CHHHHHHHHHHCCCSSCEECCCSSCCCTTSCCCCCHHHHTC----CCCSCCCCCCTTCCHHH
T ss_pred ccchhhhHhhcCCCCCCChHHHHHHHHhhCCCcCceeeeeeEEECCCCCEeecHHHHhc----CccccccCCCCCCcHHH
Confidence 45555579999999999999999999988788899999999986776555555554443 33336779999999999
Q ss_pred HHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHH-HHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCC
Q 013839 98 VEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQ-RRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPD 176 (435)
Q Consensus 98 r~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~-~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~ 176 (435)
|+++++++.+.+..++++++|.+..+.||++|+.++..++ .++.+||+|++++|+|.++...++..|++++.+++.+++
T Consensus 85 r~~ia~~~~~~~~~~~~~~~i~~~~~~~g~ga~~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~ 164 (409)
T 4eu1_A 85 VEEAQKLCFGPTCAALRDGRIASCQTLGGTGALRIGGDLLNRFVANCNRIYGPDVGYPNHESIFAKAGMELTPYSYYDPA 164 (409)
T ss_dssp HHHHHHHHHCSSCHHHHTTCEEEEEESHHHHHHHHHHHHGGGTSSSCCEEEEESSCCTHHHHHHHHTTCEEEEECCEETT
T ss_pred HHHHHHHHcCCCchhhccCceeeeecccchHHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHcCCeEEEEEeecCc
Confidence 9999999977766555577886557999999998875333 356789999999999999999999999999999985566
Q ss_pred CCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhh
Q 013839 177 SKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFL 256 (435)
Q Consensus 177 ~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~ 256 (435)
++++|++++++.+++.+++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++...+..++..+.
T Consensus 165 ~~~~d~~~l~~~l~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~ 244 (409)
T 4eu1_A 165 TKGLNLAGMLECLDKAPEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRHLV 244 (409)
T ss_dssp TTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHH
T ss_pred CCcCcHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHHHH
Confidence 78999999999997644567888889999999999999999999999999999999999999999874211234555555
Q ss_pred hcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHH
Q 013839 257 EDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVK 336 (435)
Q Consensus 257 ~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~ 336 (435)
+..+++++++|+||.+|++|+|+||+++++++++..+.+++.++...+..+.+++.++|.++..+|.+..+.+.|.++++
T Consensus 245 ~~~~~~i~~~S~SK~~g~~G~riG~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 324 (409)
T 4eu1_A 245 DMVPNLIVAQSFSKNFGLYGHRCGALHISTASAEEAKRLVSQLALLIRPMYNNPPLYGAWVVSSILKDPQLTALWKKELK 324 (409)
T ss_dssp TTSSCCEEEEECTTTSSCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred hhCCcEEEEecCcccccCccCCceEEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 66678999999999999999999997222447776666777777776677788899999999999998877777888899
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCCCHHHHHHHhhhccEEEeCCCcEEeccCCCCcHHHHHHHH
Q 013839 337 IMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLTPYQVDRLAKEFHIYMTQDGRISMAGVTTGNVNYLANAI 416 (435)
Q Consensus 337 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ll~~~gI~i~pggRis~~~~~~e~i~~~~~~l 416 (435)
+.+++++++++.+.+.|+++|.+..+.+..+++|+|.|++++.+++..+++++||.+.|++||+++..+++++++++++|
T Consensus 325 ~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~p~~Ri~~~~~~~~~i~~~~~~l 404 (409)
T 4eu1_A 325 QMSSRIAEVRKRLVSELKACGSVHDWSHIERQVGMMAYTGLTREQVELLRSEYHIYMTLNGRAAVSGLNSTNVEYVSQAI 404 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHSCSSEEECCCCHHHHHHHHHHHCEECCTTCEEEGGGCCTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcceecCCceEEEEeCCCHHHHHHHHHcCCEEEcCCCEEEEEecCHhhHHHHHHHH
Confidence 99999999999999999998765557778899999999999988888888889999999999999887889999999999
Q ss_pred HHHH
Q 013839 417 HEVT 420 (435)
Q Consensus 417 ~~~l 420 (435)
++++
T Consensus 405 ~~~l 408 (409)
T 4eu1_A 405 HNVT 408 (409)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8875
No 7
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*
Probab=100.00 E-value=4.6e-51 Score=399.44 Aligned_cols=392 Identities=36% Similarity=0.609 Sum_probs=325.7
Q ss_pred cccccCCCCCCchhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHH--hcCCCCCCCCCCcccHHHHHHHH
Q 013839 25 WWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAK--IAGSEFLESISASVSTKMVEESV 102 (435)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Y~~~~g~~~lr~~ia 102 (435)
++++++..+++.++.+.+.+.++..+++|+|+.|.|.+.++.+++.+.+.+++.+ +......+|++..|.+++|++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la 80 (397)
T 3fsl_A 1 MFQKVDAYAGDPILTLMERFKEDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIA 80 (397)
T ss_dssp CCTTCCCCCCCHHHHHHHHHHTCCCSCCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSCCCCCCCCCTTCCHHHHHHHH
T ss_pred CcccCCCCCCCchhhHHHHHhcCCCCCeEEEeeeEEECCCCCccCcHHHHHHHHhhccCccccccCCCCCchHHHHHHHH
Confidence 4678888999999999999988777899999999765555545554555555554 44434667999999999999999
Q ss_pred HhHcCCCCccccCC--CeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCc
Q 013839 103 KLVYGKDSDVVKEG--RSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSL 180 (435)
Q Consensus 103 ~~l~~~~~~~~~~~--~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~ 180 (435)
+++.+.....++++ +|+ +|+||++|+.++..+++++.+||+|+++.|+|.++...++..|++++.++..+++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~i~--~t~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 158 (397)
T 3fsl_A 81 PLLFGADHPVLKQQRVATI--QTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGV 158 (397)
T ss_dssp HHHHCTTCHHHHTTCEEEE--EESHHHHHHHHHHHHHHHHCTTCCEEEESSCCHHHHHHHHHTTCCEEEECCEETTTTEE
T ss_pred HHHhcCCcccccccceEEE--EcCCcHHHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHHcCCceEEEeeeeccCCcC
Confidence 99976655334577 777 99999999999865667789999999999999999999999999999998854567899
Q ss_pred ChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCC
Q 013839 181 DFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEH 260 (435)
Q Consensus 181 d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~ 260 (435)
|++++++.+.+.+++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.++. +....++..+.+..+
T Consensus 159 d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~~ 237 (397)
T 3fsl_A 159 RFNDLLATLKTLQAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGM-EEDAYAIRAIASAGL 237 (397)
T ss_dssp CHHHHHHHHTTCCTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCT-TGGGHHHHHHHHTTC
T ss_pred cHHHHHHHHHhCCCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCc-ccccHHHHHHHhcCC
Confidence 9999999998655678999999999999999999999999999999999999999999999862 124456666666678
Q ss_pred eEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHH
Q 013839 261 LIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMAD 340 (435)
Q Consensus 261 ~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~ 340 (435)
++++++|+||.+|++|+|+||+++.+.+++..+.+...++...+..+.+++.++|.++..++.+..+.+.|.+++++.++
T Consensus 238 ~~i~~~S~SK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 317 (397)
T 3fsl_A 238 PALVSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRT 317 (397)
T ss_dssp CEEEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHH
T ss_pred CEEEEecccccccCcCCCeeEEEEecCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999997434456644445555555445567778899999999999988777777788999999
Q ss_pred HHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCCCHHHHHHHhhhccEEEeCCCcEEeccCCCCcHHHHHHHHHHH
Q 013839 341 RIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLTPYQVDRLAKEFHIYMTQDGRISMAGVTTGNVNYLANAIHEV 419 (435)
Q Consensus 341 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ll~~~gI~i~pggRis~~~~~~e~i~~~~~~l~~~ 419 (435)
+++++++.+.+.|++++.+.++.+..+++|+|+|++++.+.+..+++++||.+.||+||+++..+++++++++++|+++
T Consensus 318 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~Ris~~~~~~~~i~~~~~~l~~~ 396 (397)
T 3fsl_A 318 RILAMRQELVKVLSTEMPERNFDYLLNQRGMFSYTGLSAAQVDRLREEFGVYLIASGRMCVAGLNTANVQRVAKAFAAV 396 (397)
T ss_dssp HHHHHHHHHHHHHHHHCTTSCCTHHHHCCSSEEECCCCHHHHHHHHHTTCEECCTTCEEEGGGCCTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCceeecCCceEEEecCCCHHHHHHHHHhCCEEECCCCeEEEEecCHhhHHHHHHHHHhh
Confidence 9999999999999988532236677889999999999988888888889999999999999877889999999999875
No 8
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Probab=100.00 E-value=5.7e-49 Score=386.60 Aligned_cols=398 Identities=43% Similarity=0.727 Sum_probs=323.1
Q ss_pred ccccccCCCCCCchhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhc--CCCCCCCCCCcccHHHHHHH
Q 013839 24 GWWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIA--GSEFLESISASVSTKMVEES 101 (435)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Y~~~~g~~~lr~~i 101 (435)
+++++++..+++.++.+.+...+..++++|+|+.|.|++.++++.+++.+.+++.+.. .+....|.+..|.+++|+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~l 83 (412)
T 1ajs_A 4 SVFAEVPQAQPVLVFKLIADFREDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTCA 83 (412)
T ss_dssp CTTTTCCCCCCCHHHHHHHHHHTCCCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHH
T ss_pred chhhhCcccCCchHHHHHHHHhhcCCCCceeeccceecCCCCCccccHHHHHHHHHhhhChhhccCCCCCCCCHHHHHHH
Confidence 4788888888888988888887666788999999997665555556666776666654 33456798889999999999
Q ss_pred HHhHcCCCCccccCCCeeeEe--cCCchhHHHHHHHHHHHhCCC-----CEEEEcCCCChhhHHHHhhCCCC-eeeeeec
Q 013839 102 VKLVYGKDSDVVKEGRSAGVQ--ALSGTGACRLFAEFQRRFHPE-----SHIYFPDPTWSNHHNIWRDAQIP-ERTYHYY 173 (435)
Q Consensus 102 a~~l~~~~~~~~~~~~v~~~~--t~gg~~a~~~~~~~~~~~~~g-----d~Vlv~~p~y~~~~~~~~~~g~~-~~~v~~~ 173 (435)
++++.+..+..+.+++|. + |+||++|+.++..+...+.+| |+|+++.|+|.++...++..|++ ++.++..
T Consensus 84 a~~~~~~~~~~~~~~~v~--~~~t~gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~ 161 (412)
T 1ajs_A 84 SRLALGDDSPALQEKRVG--GVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYW 161 (412)
T ss_dssp HHHHHCTTCHHHHTTCEE--EEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHTTCSCEEEEECE
T ss_pred HHHHhcCCCCccCCCcEE--EEECCCcHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHHHHHHcCCceeEEEeee
Confidence 999966544444578988 7 999999999986555667899 99999999999999999999999 9999874
Q ss_pred CCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHH
Q 013839 174 DPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIR 253 (435)
Q Consensus 174 ~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~ 253 (435)
+++++++|++++++++.+.+++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++.+....++.
T Consensus 162 ~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~ 241 (412)
T 1ajs_A 162 DTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIR 241 (412)
T ss_dssp ETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHH
T ss_pred cCCCCccCHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHH
Confidence 34668899999999997544467888899999999999999999999999999999999999999998753101233454
Q ss_pred HhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHH
Q 013839 254 IFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWID 333 (435)
Q Consensus 254 ~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~ 333 (435)
.+....++++++.|+||.+|++|+|+||+++.+.+++..+.+++.+....+..+.+++.++|.++..+|.+..+.+.|.+
T Consensus 242 ~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~ 321 (412)
T 1ajs_A 242 YFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTG 321 (412)
T ss_dssp HHHHTTCCEEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHH
T ss_pred HHhccCCcEEEEEecccccCCCCcceEEEEEecCCHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHcCcchhHHHHH
Confidence 44445678999999999999889999999621125654455666666655555666789999999999987654555667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCCCHHHHHHHhhhccEEEeCCCcEEeccCCCCcHHHHH
Q 013839 334 EVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLTPYQVDRLAKEFHIYMTQDGRISMAGVTTGNVNYLA 413 (435)
Q Consensus 334 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ll~~~gI~i~pggRis~~~~~~e~i~~~~ 413 (435)
++++.+++++++++.+.+.|++++.+..+.+..+++|+|+|++++.+++..+++++||.+.|++||+++..+++++++++
T Consensus 322 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~Ris~~~~~~~~i~~~~ 401 (412)
T 1ajs_A 322 NVKTMADRILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGLNPKQVEYLINQKHIYLLPSGRINMCGLTTKNLDYVA 401 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHCCSSEEECCCCHHHHHHHHHTTCEECCTTSEEEGGGCCTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCeeEEcCCCceEEEeCCCHHHHHHHHHhCCEEecCCcEEEeeeCCHHHHHHHH
Confidence 88899999999999999999988633346677788999999999877888888889999999999999855899999999
Q ss_pred HHHHHHHHhh
Q 013839 414 NAIHEVTRSE 423 (435)
Q Consensus 414 ~~l~~~l~~~ 423 (435)
++|+++++++
T Consensus 402 ~~l~~~l~~~ 411 (412)
T 1ajs_A 402 TSIHEAVTKI 411 (412)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhc
Confidence 9999988653
No 9
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1
Probab=100.00 E-value=1.3e-48 Score=383.98 Aligned_cols=398 Identities=40% Similarity=0.726 Sum_probs=321.0
Q ss_pred cccccccCCCCCCchhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHH-hc-CCCCCCCCCCcccHHHHHH
Q 013839 23 VGWWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAK-IA-GSEFLESISASVSTKMVEE 100 (435)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~Y~~~~g~~~lr~~ 100 (435)
+|++++++..++++++.+.+.+.+.+++++|+|+.|.|++.++.+.+++.+.+++.. .. .+...+|.+..|.+++|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~ 81 (412)
T 1yaa_A 2 ATLFNNIELLPPDALFGIKQRYGQDQRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSN 81 (412)
T ss_dssp TTTTTTCCCCCCCTTHHHHHHHHTCCCSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHH
T ss_pred cchhccCcccCCCcHHHHHHHHhcCCCCCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCcccccCCCCCCCcHHHHHH
Confidence 357888888888888888888876666889999999987777666666767766665 44 2335679888999999999
Q ss_pred HHHhHcCCCCccccCCCeeeEe--cCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCC
Q 013839 101 SVKLVYGKDSDVVKEGRSAGVQ--ALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSK 178 (435)
Q Consensus 101 ia~~l~~~~~~~~~~~~v~~~~--t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~ 178 (435)
+++++.+..+.++.+++|. + |+||++|+.++..+...+.+||+|++++|+|.++...++..|++++.++..+++++
T Consensus 82 ia~~~~~~~~~~~~~~~i~--~~~t~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~ 159 (412)
T 1yaa_A 82 AAKIIFGTQSDALQEDRVI--SVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETK 159 (412)
T ss_dssp HHHHHHCTTCHHHHTTCEE--EEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHHTTTCCEEEEECEETTTT
T ss_pred HHHHHhcCCCCCCCcceEE--EEeccchHhHHHHHHHHHHHhCCCCEEEEeCCCCccHHHHHHHcCceEEEEeeecCCCC
Confidence 9999966554445578988 7 99999999988655666789999999999999999999999999999987434468
Q ss_pred CcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhc
Q 013839 179 SLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLED 258 (435)
Q Consensus 179 ~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~ 258 (435)
++|++++++.+.+.++.+.++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++......++..+...
T Consensus 160 ~~d~~~l~~~l~~~~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~ 239 (412)
T 1yaa_A 160 SLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEK 239 (412)
T ss_dssp EECHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHH
T ss_pred ccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhc
Confidence 89999999999754334667777999999999999999999999999999999999999999875310112344343333
Q ss_pred CC---eEEEEecccccccccCCcccEEEEEe----cChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHH
Q 013839 259 EH---LIGCAQSYAKSMGLYGHRVGCLSILC----VDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLW 331 (435)
Q Consensus 259 ~~---~~i~~~s~SK~~g~~G~RvG~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~ 331 (435)
.+ ++++++|+||.+|++|+|+||+++++ .+++..+.+++.+....+..+.+++.++|.++..+|.+..+.+.|
T Consensus 240 ~~~~~~~i~~~s~sK~~~~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~ 319 (412)
T 1yaa_A 240 LSTVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQW 319 (412)
T ss_dssp TTTTCCEEEEEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHH
T ss_pred CCCCcceEEEeccCCCCCCcCCcceEEEEEecCCCCCHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHhCCHHHHHHH
Confidence 44 89999999999998899999995213 144434456777776555666777899999999999887666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCCCHHHHHHHhhhccEEEeCCCcEEeccCCCCcHHH
Q 013839 332 IDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLTPYQVDRLAKEFHIYMTQDGRISMAGVTTGNVNY 411 (435)
Q Consensus 332 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ll~~~gI~i~pggRis~~~~~~e~i~~ 411 (435)
.+++++.+++++++++.+.+.|++++.+..+.+..+++|+|+|++++.+.+..+++++||.+.+..||+++..+++++++
T Consensus 320 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~Ris~~~~~~~~i~~ 399 (412)
T 1yaa_A 320 HKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGLTPQMVKRLEETHAVYLVASGRASIAGLNQGNVEY 399 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCTHHHHCCSSEEECCCCHHHHHHHHHHHCEECCTTSEEEGGGCCTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeeeccCceEEEeeCCCHHHHHHHHHhCCEEeccCcEEEEccCCHhHHHH
Confidence 77899999999999999999999886322356778899999999998877888887899999997899997658999999
Q ss_pred HHHHHHHHHHh
Q 013839 412 LANAIHEVTRS 422 (435)
Q Consensus 412 ~~~~l~~~l~~ 422 (435)
++++|+++++.
T Consensus 400 ~~~~l~~~~~~ 410 (412)
T 1yaa_A 400 VAKAIDEVVRF 410 (412)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998764
No 10
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...
Probab=100.00 E-value=3.6e-48 Score=378.79 Aligned_cols=392 Identities=37% Similarity=0.657 Sum_probs=298.4
Q ss_pred cccccCCCCCCchhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHh-cCCCCCCCCCCcccHHHHHHHHH
Q 013839 25 WWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKI-AGSEFLESISASVSTKMVEESVK 103 (435)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Y~~~~g~~~lr~~ia~ 103 (435)
+|++++..+++.++.....+....+++.|||+.|.|.+.++...+++.+.+++.+. ......+|.+..|.+++|+++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~ 80 (396)
T 2q7w_A 1 MFENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQE 80 (396)
T ss_dssp -CTTCCCCCC-----------------CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCTTCCHHHHHHHHH
T ss_pred CccccccCCCchHHHHHHHHhccCCCCceecccccccCCCCCccCcHHHHHHHHhhcCcccccCCCCCCCCHHHHHHHHH
Confidence 36677888888887777777655557899999999755544344555555555544 22235679888999999999999
Q ss_pred hHcCCCCccccCCCeeeEe--cCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcC
Q 013839 104 LVYGKDSDVVKEGRSAGVQ--ALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLD 181 (435)
Q Consensus 104 ~l~~~~~~~~~~~~v~~~~--t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d 181 (435)
++.+.+..++++++|. + |+||++|+.++..++..+.+||+|+++.|+|.++...++..|++++.++..+++++++|
T Consensus 81 ~~~~~~~~~~~~~~v~--~~~~~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d 158 (396)
T 2q7w_A 81 LLFGKGSALINDKRAR--TAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLD 158 (396)
T ss_dssp HHHCTTCHHHHTTCEE--EEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEEC
T ss_pred HHhcCCCCccccccEE--EEecccchhhHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHcCCceEEEecccCCCCCcC
Confidence 9966544334578888 6 99999999998544545679999999999999999999999999999987433568999
Q ss_pred hHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCe
Q 013839 182 FAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHL 261 (435)
Q Consensus 182 ~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~ 261 (435)
++++++.+.+.+++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++ .....++..+....++
T Consensus 159 ~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~~~ 237 (396)
T 2q7w_A 159 FDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGL-EEDAEGLRAFAAMHKE 237 (396)
T ss_dssp HHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCH-HHHTHHHHHHHHHCSC
T ss_pred HHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCc-cchhHHHHHHHhcCCc
Confidence 999999997543357889999999999999999999999999999999999999999998752 0122345444444578
Q ss_pred EEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q 013839 262 IGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADR 341 (435)
Q Consensus 262 ~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~ 341 (435)
+++++|+||.+|++|+|+||+++.+++++..+.+++.+....+..+.+++.++|.++..+|++..+.+.|.+++++.+++
T Consensus 238 ~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~ 317 (396)
T 2q7w_A 238 LIVASSYSXNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQR 317 (396)
T ss_dssp EEEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CH
T ss_pred EEEEEeccccccccccccceEEEEcCCHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHhcChhhHHHHHHHHHHHHHH
Confidence 99999999999999999999962123454444477777665555666779999999999998875566677888999999
Q ss_pred HHHHHHHHHHHHHhhCCCCCccccccCcceeEecCCCHHHHHHHhhhccEEEeCCCcEEeccCCCCcHHHHHHHHHHH
Q 013839 342 IQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLTPYQVDRLAKEFHIYMTQDGRISMAGVTTGNVNYLANAIHEV 419 (435)
Q Consensus 342 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ll~~~gI~i~pggRis~~~~~~e~i~~~~~~l~~~ 419 (435)
++++++.+.+.|++++.+..+.+..+++|+|+|++++.+.+..+++++||.+.|+.||+++..+++++++++++|+++
T Consensus 318 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~Ris~~~~~~e~i~~~~~~l~~~ 395 (396)
T 2q7w_A 318 IQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKEQVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVAV 395 (396)
T ss_dssp HHHHHHHHHHHHHHTTCCSCCTHHHHCCSSEEECCCCHHHHHHHHHHHCEECCTTCEEEGGGCCTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCcceecCCCceEEEecCCHHHHHHHHHhcCeeecCCceEEEeecCHHHHHHHHHHHHhc
Confidence 999999999999988632235667789999999999887788888889999999889999755899999999999875
No 11
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*
Probab=100.00 E-value=4e-47 Score=371.20 Aligned_cols=389 Identities=33% Similarity=0.590 Sum_probs=308.9
Q ss_pred cccccCCCCCCchhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhc-CCCCCCCCCCcccHHHHHHHHH
Q 013839 25 WWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIA-GSEFLESISASVSTKMVEESVK 103 (435)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Y~~~~g~~~lr~~ia~ 103 (435)
+|++++..+++.++.+.+.+....+++.|||+.|.|.+.++...+.+.+.+++.+.. .+....|++..|.+++|+++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~ 80 (394)
T 2ay1_A 1 MLGNLKPQAPDKILALMGEFRADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGE 80 (394)
T ss_dssp CGGGCCCCCCCSHHHHHHHHHHCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHH
T ss_pred CCccCccCCCccHHHHHHHHHhCCCccccccccceeeCCCCCccCcHHHHHHHHHhcCCcccCCCCCCCCcHHHHHHHHH
Confidence 367788888888988888887666678999999997555443455566666655543 2235679998999999999999
Q ss_pred hHcCCCCccccCCCeeeEe--cCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcC
Q 013839 104 LVYGKDSDVVKEGRSAGVQ--ALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLD 181 (435)
Q Consensus 104 ~l~~~~~~~~~~~~v~~~~--t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d 181 (435)
++.+... ++++|. + |+||++|+.++..++..+.+||+|+++.|+|.++...++..|++++.++..+++++++|
T Consensus 81 ~~~~~~~---~~~~v~--~~~~~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d 155 (394)
T 2ay1_A 81 LILGDGL---KSETTA--TLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVD 155 (394)
T ss_dssp HHHGGGC---CGGGEE--EEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEEC
T ss_pred HHhCCCC---CcccEE--EEecCCchhHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCceEEEecccccCCccC
Confidence 9854321 367888 7 99999999998544433569999999999999999999999999999987433568899
Q ss_pred hHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCe
Q 013839 182 FAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHL 261 (435)
Q Consensus 182 ~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~ 261 (435)
++++++.+.+.+++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. ....++..+....++
T Consensus 156 ~~~l~~~l~~~~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~~~ 234 (394)
T 2ay1_A 156 FEGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLE-EDAAGTRLIASRIPE 234 (394)
T ss_dssp HHHHHHHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHH-HHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcc-cchHHHHHHhhcCCC
Confidence 9999999985433578888999999999999999999999999999999999999999887520 012344444444568
Q ss_pred EEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q 013839 262 IGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADR 341 (435)
Q Consensus 262 ~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~ 341 (435)
+++++|+||.+|++|+|+||+++.+++++..+.+.+.+....+..+.+++.++|.++..+|.+..+.+.|.++.++.+++
T Consensus 235 ~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~ 314 (394)
T 2ay1_A 235 VLIAASCSKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSG 314 (394)
T ss_dssp EEEEEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeccCCCcCcCCccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999963123565444455656554455566678999999999998875666667888999999
Q ss_pred HHHHHHHHHHHHHhhCCCCCccccccCcceeEecCCCHHHHHHHhhhccEEEeCCCcEEeccCCCCcHHHHHHHHHHH
Q 013839 342 IQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLTPYQVDRLAKEFHIYMTQDGRISMAGVTTGNVNYLANAIHEV 419 (435)
Q Consensus 342 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ll~~~gI~i~pggRis~~~~~~e~i~~~~~~l~~~ 419 (435)
++++++.+.+.|++++.+..+.+..+++|+|+|++++.+.+..+++++||.+.|+.||+++..+++++++++++|+++
T Consensus 315 ~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~gi~v~~~~Ris~~~~~~~~i~~~~~~l~~~ 392 (394)
T 2ay1_A 315 MLRLREQLAGELRDLSGSDRFGFVAEHRGMFSRLGATPEQVKRIKEEFGIYMVGDSRINIAGLNDNTIPILARAIIEV 392 (394)
T ss_dssp HHHHHHHHHHHHHHHHTSSTTTHHHHCCSSEEECCCCHHHHHHHHHHHCEECCTTCEEEGGGCCTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCeeEEcCCceEEEeeCCCHHHHHHHHHhCCEEecCCCeEEeecCCHhhHHHHHHHHHHc
Confidence 999999999999988632235666788899999999877787788889999999889999766899999999999875
No 12
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=100.00 E-value=1.5e-46 Score=370.10 Aligned_cols=380 Identities=19% Similarity=0.272 Sum_probs=298.6
Q ss_pred cCCCCCCchhhHHHHHhcCC----CCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHh
Q 013839 29 VAPAAKDPINGVTEAFLADP----SPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKL 104 (435)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~----~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~ 104 (435)
....+++.++.+.+++++.. +.++|+|+.|.|.+.++...+++.+.+++.++.......|.+..|.+++|++++++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~ 92 (418)
T 3rq1_A 13 KGKKLKDVIFVTAGQAQADAKENGRENVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSDSEHVGYAPIAGIPDFLCAAEKE 92 (418)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHHHCGGGCEECCSSCCBCTTSCBCCCHHHHHHHHTCCHHHHHSCCCTTCCHHHHHHHHHH
T ss_pred CCCCCCchHHHHHHHHHhhhhhhcCCCeEECCCCcccCCCCCccccHHHHHHHHHhcccccCCCCCCCChHHHHHHHHHH
Confidence 33455667777776665422 45899999999877666677777778777765532246799999999999999999
Q ss_pred HcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHh
Q 013839 105 VYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAA 184 (435)
Q Consensus 105 l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~ 184 (435)
+.+..... .+++++ +|+||++|+.++ +.+++.+||+|++++|+|.++...++..|++++.+++. ++++++|++.
T Consensus 93 ~~~~~~~~-~~~~i~--~t~g~~~al~~~--~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~-~~~~~~d~~~ 166 (418)
T 3rq1_A 93 CFGNFRPE-GHIRSI--ATAGGTGGIHHL--IHNYTEPGDEVLTADWYWGAYRVICSDTGRTLVTYSLF-DEHNNFNHEA 166 (418)
T ss_dssp HHGGGCCS-SEEEEE--EESHHHHHHHHH--HHHHSCTTCEEEEESSCCTHHHHHHHHTTCEEEEECSB-CTTSSBCHHH
T ss_pred HhcccCcc-ccccEE--ECCchHHHHHHH--HHHhcCCCCEEEECCCCchhHHHHHHHcCCEEEEEeee-CCCCCcCHHH
Confidence 85543221 123777 899999999998 77778999999999999999999999999999999984 3458999999
Q ss_pred HHHHhhcC--CCCcEEEEeCCC-CCCCCCCCCHHHHHHHHHHHH------hcCceeeeeccCCCccCCCCcccHHHH-HH
Q 013839 185 LMDDIKNA--PDSSFFLLHPSA-HNPTGVDPTEEQWREISYQFK------VKGHFPFFDMAYQGFASGDLDKDAQAI-RI 254 (435)
Q Consensus 185 l~~~i~~~--~~~~~~v~~~~p-~NPtG~~~~~~~l~~i~~~~~------~~~~~vi~Deay~~~~~~~~~~~~~~~-~~ 254 (435)
|++++++. ++.++++++++| |||||.+++.+++++|+++|+ +|++++|+||+|.++.+++ ....++ ..
T Consensus 167 l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~--~~~~~~~~~ 244 (418)
T 3rq1_A 167 FQNRVNELAAKQTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEK--DEVRAFFNK 244 (418)
T ss_dssp HHHHHHHHHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCH--HHHHGGGGG
T ss_pred HHHHHHHhhccCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCCh--HHHHHHHHH
Confidence 99998731 022348889999 999999999999999999999 8999999999999988653 111122 11
Q ss_pred hhhcCCe--EEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhh----ccccCCChhHHHHHHHHhCChhhH
Q 013839 255 FLEDEHL--IGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIAR----AMYGSPPVHGILLVATILSDPNLK 328 (435)
Q Consensus 255 ~~~~~~~--~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~q~~~~~~l~~~~l~ 328 (435)
..+..++ +++++|+||.+|++|+|+||+++.+.+++ +++.+.+... ..+.+++.++|.++..++.+..+.
T Consensus 245 ~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~ 320 (418)
T 3rq1_A 245 FSHLPKEILTCVCYSLSKGFTMYGQRVGAMIGISDDEE----IADEFFEVNKSTSRATWSNICRPAMRTMANIVADPAKF 320 (418)
T ss_dssp GTTCCTTEEEEEEEESTTTTTCCSSCCEEEEEEESSHH----HHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTCHHHH
T ss_pred HHhcCCCceEEEEEeCCCCCcCcCCcceEEEEEeCCHH----HHHHHHHHHHHHHhhccCCCchHHHHHHHHHhCCHHHH
Confidence 2223344 58999999999999999999974334677 6666655432 234678999999999999987766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCC-CHHHHHHHhhhccEEEeCCC---cEEeccC
Q 013839 329 SLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL-TPYQVDRLAKEFHIYMTQDG---RISMAGV 404 (435)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~ll~~~gI~i~pgg---Ris~~~~ 404 (435)
+.|.++.++++++++++++.+.+.|+++| +.+..+++|+|+|+.+ +.+.+.+.|+++||.+.||+ ||+++..
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~iRis~~~~ 396 (418)
T 3rq1_A 321 KEYEAERNCYYQLIRDRADIFKQEAAQVG----LPMLPYRGGFFITIPTDSANAICEELKKEHIYVIALANGIRIAACGI 396 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT----CCCCCCCSSSEEEEECTTHHHHHHHHHHTTEECEECSSEEEEEGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCCCCCceEEEEcCCCCHHHHHHHHHhCCEEEecCCCCeEEEEecC
Confidence 67777888889999999999999999886 4577889999999876 45555456678999999986 9998756
Q ss_pred CCCcHHHHHHHHHHHHHhhh
Q 013839 405 TTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 405 ~~e~i~~~~~~l~~~l~~~~ 424 (435)
+++++++++++|+++++++.
T Consensus 397 ~~~~i~~~~~~l~~~l~~~~ 416 (418)
T 3rq1_A 397 PKCQMTGLAEKIYNAMKSLG 416 (418)
T ss_dssp CHHHHTTHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999987654
No 13
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Probab=100.00 E-value=3.4e-46 Score=363.56 Aligned_cols=360 Identities=15% Similarity=0.138 Sum_probs=279.4
Q ss_pred cCCCCCCchhhHHHHHhc--CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHc
Q 013839 29 VAPAAKDPINGVTEAFLA--DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVY 106 (435)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~--~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~ 106 (435)
+...+++.+..+.+...+ ..+++.|+|+.|+| +. +.++.+.+.+...+..+ ...|++..|.+++|+++++++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~-~~---~~~~~v~~a~~~~~~~~-~~~y~~~~g~~~lr~~ia~~~~ 82 (385)
T 1b5p_A 8 VQAMKPSATVAVNAKALELRRQGVDLVALTAGEP-DF---DTPEHVKEAARRALAQG-KTKYAPPAGIPELREALAEKFR 82 (385)
T ss_dssp HHHCCCCHHHHHHHHHHHHHHTTCCCEECCCSSC-SS---CCCHHHHHHHHHHHHTT-CCSCCCTTCCHHHHHHHHHHHH
T ss_pred HhhcCcchHHHHHHHHHHHHhcCCCEEEecCCCC-CC---CCCHHHHHHHHHHHhcC-CCCCCCCCCCHHHHHHHHHHHH
Confidence 333444445444443322 13568999999996 33 33334444434444333 4569888899999999999995
Q ss_pred CCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHH
Q 013839 107 GKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALM 186 (435)
Q Consensus 107 ~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~ 186 (435)
...+..+++++|+ +|+||++|+.++ +.+++.+||+|++++|+|..+...++..|++++.+++.+++++.+|+++++
T Consensus 83 ~~~g~~~~~~~i~--~t~g~~~al~~~--~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~ 158 (385)
T 1b5p_A 83 RENGLSVTPEETI--VTVGGSQALFNL--FQAILDPGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVR 158 (385)
T ss_dssp HTTCCCCCGGGEE--EESHHHHHHHHH--HHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHHHHH
T ss_pred HHhCCCCChHHEE--EcCChHHHHHHH--HHHhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEeecCcccCCCCCHHHHH
Confidence 4433334577888 999999999998 677789999999999999999999999999999999843356789999999
Q ss_pred HHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEe
Q 013839 187 DDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQ 266 (435)
Q Consensus 187 ~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 266 (435)
+++. ++++++++++||||||.+++.+++++|+++|++||+++|+||+|..+.+++ . ..++..+.+ +++++++
T Consensus 159 ~~l~---~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~-~--~~~~~~~~~--~~~i~~~ 230 (385)
T 1b5p_A 159 RAIT---PRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEG-E--HFSPGRVAP--EHTLTVN 230 (385)
T ss_dssp TTCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSS-C--CCCGGGTCT--TTEEEEE
T ss_pred HhcC---CCCEEEEEeCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCC-C--CCCHHHcCC--CCEEEEE
Confidence 9887 568999999999999999999999999999999999999999999988753 1 112333322 7899999
Q ss_pred cccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHH
Q 013839 267 SYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKR 346 (435)
Q Consensus 267 s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 346 (435)
||||.+|++|+|+||+++ +++ +++.+.+.....+.+++.+.|.++..+|...... .+++++.++++++++
T Consensus 231 s~SK~~~~~G~RiG~~~~---~~~----~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~---~~~~~~~~~~~~~~~ 300 (385)
T 1b5p_A 231 GAAKAFAMTGWRIGYACG---PKE----VIKAMASVSRQSTTSPDTIAQWATLEALTNQEAS---RAFVEMAREAYRRRR 300 (385)
T ss_dssp ESTTTTTCGGGCCEEEEC---CHH----HHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHH---HHHHHHHHHHHHHHH
T ss_pred echhhcCCcccceEEEEe---CHH----HHHHHHHHHhhccCCCCHHHHHHHHHHHhCCCcc---hHHHHHHHHHHHHHH
Confidence 999999999999999974 777 8887877666666788999999998888651000 156788899999999
Q ss_pred HHHHHHHHhhCCCCCccccccCcceeEecCC-----CHHH-HHHHhhhccEEEeCC------C--cEEeccCCCCcHHHH
Q 013839 347 TTLRQNLEKLGSSLNWEHITNQLGMFCFSGL-----TPYQ-VDRLAKEFHIYMTQD------G--RISMAGVTTGNVNYL 412 (435)
Q Consensus 347 ~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~-~~~ll~~~gI~i~pg------g--Ris~~~~~~e~i~~~ 412 (435)
+.+.+.|+++| +.+..+++++|+|+.+ +.+. .+.++ ++||.+.|| + |||++. ++++++++
T Consensus 301 ~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~gv~v~~g~~f~~~~~iRis~~~-~~~~i~~~ 374 (385)
T 1b5p_A 301 DLLLEGLTALG----LKAVRPSGAFYVLMDTSPIAPDEVRAAERLL-EAGVAVVPGTDFAAFGHVRLSYAT-SEENLRKA 374 (385)
T ss_dssp HHHHHHHHHHT----CCBCCCSBTTEEEEECTTTCSSHHHHHHHHH-HTTEECEESGGGTCTTEEEEECCS-CHHHHHHH
T ss_pred HHHHHHHHHCC----CeecCCCeeEEEEEecCCCCCCHHHHHHHHH-HCCeEEecccccCCCCeEEEEecC-CHHHHHHH
Confidence 99999999885 4577788999999754 4444 45554 789999987 2 999984 88889999
Q ss_pred HHHHHHHHH
Q 013839 413 ANAIHEVTR 421 (435)
Q Consensus 413 ~~~l~~~l~ 421 (435)
+++|+++++
T Consensus 375 l~~l~~~l~ 383 (385)
T 1b5p_A 375 LERFARVLG 383 (385)
T ss_dssp HHHGGGGC-
T ss_pred HHHHHHHHh
Confidence 998877653
No 14
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=100.00 E-value=8.7e-46 Score=364.05 Aligned_cols=380 Identities=17% Similarity=0.200 Sum_probs=294.7
Q ss_pred cccccCCCCCCchhhHHHHHhcC----CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHH
Q 013839 25 WWDHVAPAAKDPINGVTEAFLAD----PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEE 100 (435)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ 100 (435)
+.++.....++.++.+.+++++. .++++|+|+.|.|.+.++...+++.+.+++.++.......|.+..|.+++|++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~Y~~~~g~~~lr~~ 87 (413)
T 3t18_A 8 IKRATWNNGPDLAFDINNKANAAIEKYGREAVINAALGTLLDDKGKIIALPSVYDRLDEMDRSHIASYAPIEGEKDYRKI 87 (413)
T ss_dssp CTTTCCCCCCCHHHHHHHHHHHHHHHHCGGGCEECCSCCCBCTTSCBCCCHHHHHHHHHSCHHHHHSCCCTTCCHHHHHH
T ss_pred hhhcccCCCCChHHHHHHHHhhhhhhccccceEeccccCccCCCCCcCChHHHHHHHHhcCcccccCcCCCCCCHHHHHH
Confidence 34455556777787777665432 24589999999986666666677777877777643234679999999999999
Q ss_pred HHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCc
Q 013839 101 SVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSL 180 (435)
Q Consensus 101 ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~ 180 (435)
+++++.+..... .+++++ +|+||++|+.++ +..++.+||+|++++|+|..+...++..|++++.+++. ++++++
T Consensus 88 la~~~~~~~~~~-~~~~i~--~t~g~~~al~~~--~~~~~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~-~~~~~~ 161 (413)
T 3t18_A 88 VIDTLFGPYKPE-GYISAI--ATPGGTGAIRSA--IFSYLDEGDPLICHDYYWAPYRKICEEFGRNFKTFEFF-TDDFAF 161 (413)
T ss_dssp HHHHHHGGGCCS-SEEEEE--EESHHHHHHHHH--HHHHCCSSCEEEEESSCCTHHHHHHHHHTCEEEEECCB-CTTSSB
T ss_pred HHHHHhcccCcc-ccCcEE--EcCccHHHHHHH--HHHhcCCCCEEEECCCCcccHHHHHHHhCCeEEEeecc-CCCCCc
Confidence 999985543221 234777 999999999998 77778999999999999999999999999999999984 344899
Q ss_pred ChHhHHHHhhcC-CCCcE-EEEeCCC-CCCCCCCCCHHHHHHHHHHHH------hcCceeeeeccCCCccCCCCcccHHH
Q 013839 181 DFAALMDDIKNA-PDSSF-FLLHPSA-HNPTGVDPTEEQWREISYQFK------VKGHFPFFDMAYQGFASGDLDKDAQA 251 (435)
Q Consensus 181 d~e~l~~~i~~~-~~~~~-~v~~~~p-~NPtG~~~~~~~l~~i~~~~~------~~~~~vi~Deay~~~~~~~~~~~~~~ 251 (435)
|+++|++++.+. .++++ ++++++| |||||.+++.+++++|+++|+ +||+++|+||+|.++.+++. ...+
T Consensus 162 d~~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~--~~~~ 239 (413)
T 3t18_A 162 NIDVYKEAIDEGIRDSDRIASLINSPGNNPTGYSLSDEEWDEVITFLKEKAEDKDKKITLIVDVAYLEFAGDGD--QQRK 239 (413)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTTSTTCEEEEEEECTTGGGSSSSS--TTTG
T ss_pred CHHHHHHHHHHHhhcCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHhhccCCcEEEEEecccccccCChh--hHHH
Confidence 999999998731 01455 8888999 999999999999999999999 89999999999999998642 2222
Q ss_pred H-HHhhhcCCe--EEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhh----ccccCCChhHHHHHHHHhCC
Q 013839 252 I-RIFLEDEHL--IGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIAR----AMYGSPPVHGILLVATILSD 324 (435)
Q Consensus 252 ~-~~~~~~~~~--~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~q~~~~~~l~~ 324 (435)
+ ....+..++ +++++|+||.+|++|+|+||+++.+.+++ +++.+.+... ..+.+++.++|.++..++.+
T Consensus 240 ~~~~~~~~~~~~~~i~~~S~sK~~~~~G~riG~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~ 315 (413)
T 3t18_A 240 FFEKFSNLPRNLFVVVAFSMSKSHTAYGLRSGAAVGISSSKE----IIEEFEASLAHSARCNWSNGTHAAQNILIELERA 315 (413)
T ss_dssp GGGGGTTCCTTEEEEEEEEHHHHTTCGGGCCEEEEEEESCHH----HHHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTSH
T ss_pred HHHHHhhcCCCeeEEEEEecCccCCCcCcCcEEEEEecCCHH----HHHHHHHHHHHhhhccccCCChHHHHHHHHHhcC
Confidence 2 222233344 58999999999999999999964233677 6666665433 23456889999999999987
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCC-CHHHHHHHhhhccEEEeCCC---cEE
Q 013839 325 PNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL-TPYQVDRLAKEFHIYMTQDG---RIS 400 (435)
Q Consensus 325 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~ll~~~gI~i~pgg---Ris 400 (435)
..+.+ |.++.++.+++++++++.+.+.|+++| +.+..+++++|+|+++ +.+.+.+.|+++||.+.||+ ||+
T Consensus 316 ~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~g~~~iRis 390 (413)
T 3t18_A 316 ENKKI-YEQELVDLRNMLKSRADVFVTAAKENK----LTMIPYFGGFFTFIPTDKAFDIVKDLEKENIFTIPSAKGIRVA 390 (413)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTT----CCCBCCCSSSCEEEECSCHHHHHHHHHHTTEECEECSSEEEEC
T ss_pred hHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcC----CCccCCCceEEEEeCCCCHHHHHHHHHhCCEEEecCCCceEEE
Confidence 65444 567778889999999999999999886 4677889999999865 55555445578999999986 999
Q ss_pred eccCCCCcHHHHHHHHHHHHHhhh
Q 013839 401 MAGVTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 401 ~~~~~~e~i~~~~~~l~~~l~~~~ 424 (435)
++..+++++ +++|.+++++..
T Consensus 391 ~~~~~~~~~---l~~l~~~l~~~~ 411 (413)
T 3t18_A 391 ICGVGEEKI---PKLVQRLAFYTN 411 (413)
T ss_dssp TTTSCGGGH---HHHHHHHHHHHH
T ss_pred EeeCCHHHH---HHHHHHHHHHHh
Confidence 976566776 888888887654
No 15
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*
Probab=100.00 E-value=8e-46 Score=365.80 Aligned_cols=372 Identities=15% Similarity=0.116 Sum_probs=283.1
Q ss_pred cccccCCCCCCchhhHHHHHhcCCC--CCeeeeecceecCCCCCcccchHHHHHHHHh-cCCCCCCCCCCcccHHHHHHH
Q 013839 25 WWDHVAPAAKDPINGVTEAFLADPS--PYKINLGVGAYRDDKGRPVVLQCVREAEAKI-AGSEFLESISASVSTKMVEES 101 (435)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Y~~~~g~~~lr~~i 101 (435)
.++.++..++++++.+.+.++.+++ +++|+|+.|.| +..+...+++.+.+++... ......+|.+..|.+++|+++
T Consensus 27 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~l~~g~~-~~~g~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~l 105 (427)
T 3dyd_A 27 RPSDMAKKTFNPIRAIVDNMKVKPNPNKTMISLSIGDP-TVFGNLPTDPEVTQAMKDALDSGKYNGYAPSIGFLSSREEI 105 (427)
T ss_dssp CCCC----------------CCCCCTTSCCEECCCSCT-TTTSSSCCCHHHHHHHHHHHHHCCSSSCCCTTCCHHHHHHH
T ss_pred chhhHhhcccchHHHHHHHHhhcccCCCCEEeCCCcCC-CccCCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcHHHHHHH
Confidence 3567777777888888888766443 56799999997 4333344445555554443 333356799999999999999
Q ss_pred HHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcC
Q 013839 102 VKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLD 181 (435)
Q Consensus 102 a~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d 181 (435)
++++.+. ..++.+++++ +|+||++|+.++ +..++.+||+|+++.|+|.++...++..|++++.++..+++++++|
T Consensus 106 a~~~~~~-~~~~~~~~v~--~t~g~t~al~~~--~~~l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d 180 (427)
T 3dyd_A 106 ASYYHCP-EAPLEAKDVI--LTSGCSQAIDLC--LAVLANPGQNILVPRPGFSLYKTLAESMGIEVKLYNLLPEKSWEID 180 (427)
T ss_dssp HHHHCBT-TBCCCGGGEE--EESSHHHHHHHH--HHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEEC
T ss_pred HHHHhhc-CCCCChHHEE--EecCcHHHHHHH--HHHhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCC
Confidence 9999654 4445578888 999999999998 6666789999999999999999999999999999998655678999
Q ss_pred hHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCe
Q 013839 182 FAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHL 261 (435)
Q Consensus 182 ~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~ 261 (435)
++++++.+. ++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. ...++..+ +...+
T Consensus 181 ~~~l~~~l~---~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~--~~~~~~~~-~~~~~ 254 (427)
T 3dyd_A 181 LKQLEYLID---EKTACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDC--KYEPLATL-STDVP 254 (427)
T ss_dssp HHHHHSSCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSC--CCCCGGGG-CSSCC
T ss_pred HHHHHHHhc---cCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCC--cCccHHHh-CCCCc
Confidence 999999987 5688999999999999999999999999999999999999999999987642 22233333 33456
Q ss_pred EEEEecccccccccCCcccEEEEEecC------hhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHH
Q 013839 262 IGCAQSYAKSMGLYGHRVGCLSILCVD------SKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEV 335 (435)
Q Consensus 262 ~i~~~s~SK~~g~~G~RvG~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~ 335 (435)
+++++|+||.|+++|+|+||+++ .+ ++ +++.+...... ..+++.++|.++..+|.... .+++
T Consensus 255 vi~~~S~sK~~~~~G~riG~~~~--~~~~~~~~~~----i~~~l~~~~~~-~~~~~~~~~~a~~~~L~~~~-----~~~~ 322 (427)
T 3dyd_A 255 ILSCGGLAKRWLVPGWRLGWILI--HDRRDIFGNE----IRDGLVKLSQR-ILGPCTIVQGALKSILCRTP-----GEFY 322 (427)
T ss_dssp EEEEEESTTTSSCGGGCCEEEEE--ECSTTSSHHH----HHHHHHHHHHH-HCCSCHHHHHHHHHHHHHSC-----HHHH
T ss_pred EEEEeeccccCCCcCcceEEEEe--cCcchhhHHH----HHHHHHHHHhc-cCCCCHHHHHHHHHHHHhcC-----HHHH
Confidence 89999999999999999999974 23 34 77777665443 46789999999999987422 2567
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCCC----------HHHHHHHhhhccEEEeCCC--------
Q 013839 336 KIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLT----------PYQVDRLAKEFHIYMTQDG-------- 397 (435)
Q Consensus 336 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~----------~~~~~~ll~~~gI~i~pgg-------- 397 (435)
++.+++++++++.+.+.|++++ ++.+..+++|+|+|++++ .+++..+++++||.+.||+
T Consensus 323 ~~~~~~~~~~~~~l~~~L~~~~---g~~~~~p~~g~~~~~~l~~~~~~~~~~~~~~~~~l~~~~gV~v~~g~~~~~~~~i 399 (427)
T 3dyd_A 323 HNTLSFLKSNADLCYGALAAIP---GLRPVRPSGAMYLMVGIEMEHFPEFENDVEFTERLVAEQSVHCLPATCFEYPNFI 399 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHHHST---TEEEECCSBTTEEEEEECGGGCTTCSSHHHHHHHHHHHHCEECEEGGGGTCTTEE
T ss_pred HHHHHHHHHHHHHHHHHHhcCC---CceecCCCeeEEEEEecCHhhcCCCCCHHHHHHHHHHHCCEEEECCcccCCCCeE
Confidence 7888999999999999999873 266778899999997542 3556777778999999872
Q ss_pred cEEeccCCCCcHHHHHHHHHHHHHhhh
Q 013839 398 RISMAGVTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 398 Ris~~~~~~e~i~~~~~~l~~~l~~~~ 424 (435)
||+++. +++++++++++|++++++..
T Consensus 400 Ris~~~-~~e~i~~~l~~l~~~l~~~~ 425 (427)
T 3dyd_A 400 RVVITV-PEVMMLEACSRIQEFCEQHY 425 (427)
T ss_dssp EEESCS-CHHHHHHHHHHHHHHHHHHC
T ss_pred EEEECC-CHHHHHHHHHHHHHHHHHhh
Confidence 999974 89999999999999987654
No 16
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=100.00 E-value=3.2e-43 Score=353.41 Aligned_cols=345 Identities=16% Similarity=0.157 Sum_probs=276.1
Q ss_pred ccchHHHHHHHHhcC--C-CCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHh-CCC
Q 013839 68 VVLQCVREAEAKIAG--S-EFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRF-HPE 143 (435)
Q Consensus 68 ~~~~~~~~~~~~~~~--~-~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~-~~g 143 (435)
.|.+.++++...+.. + ....|+++.|.+++|+++++++...++.++++++|+ +|+|+++++.++ +..++ .+|
T Consensus 107 ~p~~~~~~a~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~--~t~G~~~al~~~--~~~l~~~~g 182 (500)
T 3tcm_A 107 FSADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIF--LTDGASPGVHLM--MQLLIRNEK 182 (500)
T ss_dssp SCHHHHHHHHHHHTTSTTSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEE--EESSSHHHHHHH--HHHHCCSTT
T ss_pred CCHHHHHHHHHHHHcCCCCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEE--EcCCHHHHHHHH--HHHHcCCCC
Confidence 455577777666653 2 467899999999999999999853333334478888 999999999988 66666 799
Q ss_pred CEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcC---CCCcEEEEeCCCCCCCCCCCCHHHHHHH
Q 013839 144 SHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNA---PDSSFFLLHPSAHNPTGVDPTEEQWREI 220 (435)
Q Consensus 144 d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~---~~~~~~v~~~~p~NPtG~~~~~~~l~~i 220 (435)
|+|++++|+|..+...++..|++++.+++.++++|++|+++|++++++. ..+++++++++||||||.+++.+++++|
T Consensus 183 d~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~~i 262 (500)
T 3tcm_A 183 DGILVPIPQYPLYSASIALHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDI 262 (500)
T ss_dssp EEEEEEESCCTHHHHHHHHTTCEEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHHHHH
T ss_pred CEEEEeCCCcHhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHHHHH
Confidence 9999999999999999999999999999865557899999999999742 1267899999999999999999999999
Q ss_pred HHHHHhcCceeeeeccCCCccCCCCcccHHHHHHh---h---hcCCeEEEEecccccc-cccCCcccEEEEEecChhHHH
Q 013839 221 SYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIF---L---EDEHLIGCAQSYAKSM-GLYGHRVGCLSILCVDSKQAA 293 (435)
Q Consensus 221 ~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~---~---~~~~~~i~~~s~SK~~-g~~G~RvG~~~~~~~~~~~~~ 293 (435)
+++|++|++++|+||+|..+.+++. ....++..+ . ....++++++|+||.| |++|+|+||+++...+++
T Consensus 263 ~~la~~~~~~li~Deay~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~--- 338 (500)
T 3tcm_A 263 VKFCKNEGLVLLADEVYQENIYVDN-KKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGFSAP--- 338 (500)
T ss_dssp HHHHHHHTCEEEEECTTTTCBCCTT-CCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEEESCCTT---
T ss_pred HHHHHHcCCEEEEecCccccccCCC-CCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEEEEeCCCHH---
Confidence 9999999999999999999888532 112222221 1 1224689999999999 899999999974333677
Q ss_pred HHHHHHHHHhhccccCCChhHHHHHHHHhCCh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCc
Q 013839 294 AIRSQIQQIARAMYGSPPVHGILLVATILSDP----NLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQL 369 (435)
Q Consensus 294 ~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~----~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 369 (435)
+++.+.+... ...+++.++|.++..++..+ ...+.|.++.+..+++++++++.+.+.|++++ ++.+.++++
T Consensus 339 -~~~~l~~~~~-~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~---g~~~~~~~g 413 (500)
T 3tcm_A 339 -VREQIYKIAS-VNLCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKLE---GITCNEAEG 413 (500)
T ss_dssp -HHHHHHHHHH-TTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTST---TEECCCCCB
T ss_pred -HHHHHHHHHh-cccCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CcEEecCCe
Confidence 7777777553 46788999999999999742 34555677888999999999999999999873 377889999
Q ss_pred ceeEecCC--CH---------------HHHHHHhhhccEEEeCC-------C----cEEeccCCCCcHHHHHHHHHHHHH
Q 013839 370 GMFCFSGL--TP---------------YQVDRLAKEFHIYMTQD-------G----RISMAGVTTGNVNYLANAIHEVTR 421 (435)
Q Consensus 370 g~~~~~~~--~~---------------~~~~~ll~~~gI~i~pg-------g----Ris~~~~~~e~i~~~~~~l~~~l~ 421 (435)
|+|.|+++ .. .++.++++++||.+.|| | |++++ .+++++++++++|+++++
T Consensus 414 ~~~~~~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~-~~~e~i~~~i~~l~~~~~ 492 (500)
T 3tcm_A 414 AMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTIL-PQEDKIPAVISRFTVFHE 492 (500)
T ss_dssp TTEECCEECCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCCTTCCBEEEESC-SCTTTHHHHHHHHHHHHH
T ss_pred EEEEeeeecCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEEC-CCHHHHHHHHHHHHHHHH
Confidence 99999643 21 12467788899999976 2 99998 589999999999999998
Q ss_pred hhhhh
Q 013839 422 SEQET 426 (435)
Q Consensus 422 ~~~~~ 426 (435)
+..++
T Consensus 493 ~~~~~ 497 (500)
T 3tcm_A 493 AFMSE 497 (500)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76644
No 17
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Probab=100.00 E-value=1e-44 Score=357.37 Aligned_cols=371 Identities=13% Similarity=0.059 Sum_probs=290.1
Q ss_pred ccccccCCCCCCchhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCC-CCCCCCCcccHHHHHHHH
Q 013839 24 GWWDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSE-FLESISASVSTKMVEESV 102 (435)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Y~~~~g~~~lr~~ia 102 (435)
.+.+++...+++.+........ ++++|+|+.|.| +. ++++.+.+.+...+..+. ...|++..|.+++|++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~---~~~~i~l~~g~~-~~---~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la 77 (422)
T 3fvs_A 5 LQARRLDGIDYNPWVEFVKLAS---EHDVVNLGQGFP-DF---PPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILA 77 (422)
T ss_dssp CSCGGGTTCCCCHHHHHHHHHH---TSCCEECCCSSC-SS---CCCHHHHHHHHHHHHSCGGGGSCCCTTCCHHHHHHHH
T ss_pred hHHHHhhccCccHHHHHHHHhh---cCCceEeCCCCC-CC---CCCHHHHHHHHHHHhCCCccCCCCCCCCCHHHHHHHH
Confidence 3455666677666666655553 468999999996 33 344444444444444332 367999899999999999
Q ss_pred HhHcCCCCccccC-CCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecC-------
Q 013839 103 KLVYGKDSDVVKE-GRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYD------- 174 (435)
Q Consensus 103 ~~l~~~~~~~~~~-~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~------- 174 (435)
+++....+.++++ ++|. +++||++|+.++ +..++.+||+|+++.|+|.++...++..|++++.+++..
T Consensus 78 ~~~~~~~g~~~~~~~~i~--~~~g~~~a~~~~--~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~ 153 (422)
T 3fvs_A 78 SFFGELLGQEIDPLRNVL--VTVGGYGALFTA--FQALVDEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGE 153 (422)
T ss_dssp HHHHHHHTCCCCHHHHEE--EESHHHHHHHHH--HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCCCSSS
T ss_pred HHHHHhhCCCCCCCCcEE--EECChHHHHHHH--HHHHcCCCCEEEEcCCCchhhHHHHHHcCCEEEEEecccccccccc
Confidence 9984322222335 5888 999999999988 666788999999999999999999999999999998842
Q ss_pred ---CCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHH
Q 013839 175 ---PDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQA 251 (435)
Q Consensus 175 ---~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~ 251 (435)
++++.+|++++++++. ++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. ...+
T Consensus 154 ~~~~~~~~~d~~~l~~~~~---~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~--~~~~ 228 (422)
T 3fvs_A 154 LGSSSNWQLDPMELAGKFT---SRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGH--QHIS 228 (422)
T ss_dssp CCBGGGSBCCHHHHHTTCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC--CCCC
T ss_pred cccccCCCCCHHHHHhhcC---CCceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCC--CCCC
Confidence 1346789999999887 6789999999999999999999999999999999999999999999887642 2223
Q ss_pred HHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhH-HH
Q 013839 252 IRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLK-SL 330 (435)
Q Consensus 252 ~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~-~~ 330 (435)
+..+....++++++.|+||.+|++|+|+||+++ +++ +++.+.........+++.+.|.++..++.+.... ..
T Consensus 229 ~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~ 301 (422)
T 3fvs_A 229 IASLPGMWERTLTIGSAGKTFSATGWKVGWVLG---PDH----IMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQ 301 (422)
T ss_dssp GGGSTTTGGGEEEEEEHHHHHTCGGGCCEEEEC---CHH----HHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHTTTC
T ss_pred hhhcccccCcEEEEecchhccCCccceEEEEEe---CHH----HHHHHHHHHhhccCCCCcHHHHHHHHHHhhccccccc
Confidence 434433347899999999999999999999964 778 7887877666667788899999998888631000 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCCCH------------------HHHHHHhhhccEE
Q 013839 331 WIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLTP------------------YQVDRLAKEFHIY 392 (435)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~------------------~~~~~ll~~~gI~ 392 (435)
+.+++++.+++++++++.+.+.|+++| +.+..+++|+|+|+.+.. +++..+++++||.
T Consensus 302 ~~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~ 377 (422)
T 3fvs_A 302 PSSYFVQFPQAMQRCRDHMIRSLQSVG----LKPIIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLV 377 (422)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHTTT----CEEEBCSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcC----CeecCCCeeeEEEEechhhcccccccccccccccHHHHHHHHHHhcCEE
Confidence 125678889999999999999999886 566788999999986622 4567777888999
Q ss_pred EeCC-------------C--cEEeccCCCCcHHHHHHHHHHHHHh
Q 013839 393 MTQD-------------G--RISMAGVTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 393 i~pg-------------g--Ris~~~~~~e~i~~~~~~l~~~l~~ 422 (435)
+.|| + ||+++. +++++++++++|++++++
T Consensus 378 v~~g~~f~~~~~~~~~~~~iRis~~~-~~e~i~~~l~~l~~~l~~ 421 (422)
T 3fvs_A 378 AIPVSIFYSVPHQKHFDHYIRFCFVK-DEATLQAMDEKLRKWKVE 421 (422)
T ss_dssp CEEGGGGSCHHHHTTSCSEEEEECCC-CHHHHHHHHHHHHHHHHC
T ss_pred EeCcHHhcCCcCCCCCCCeEEEEecC-CHHHHHHHHHHHHHHHhh
Confidence 9874 1 999987 999999999999998764
No 18
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-44 Score=356.63 Aligned_cols=342 Identities=13% Similarity=0.099 Sum_probs=271.8
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCch
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~ 127 (435)
.++++|+|+.|.| +. +.++.+.+.+.+.+......+|++..|.+++|+++++++....+..+++++|. +|+||+
T Consensus 55 ~~~~~i~l~~g~~-~~---~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~v~--~t~G~~ 128 (447)
T 3b46_A 55 QGRELINLGQGFF-SY---SPPQFAIKEAQKALDIPMVNQYSPTRGRPSLINSLIKLYSPIYNTELKAENVT--VTTGAN 128 (447)
T ss_dssp TTSCCEECCCCSC-SS---CCCHHHHHHHHHHTTSGGGGSCCCTTCCHHHHHHHHHHHTTTTTSCCCGGGEE--EESHHH
T ss_pred cCCCeEEccCCCC-CC---CCCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEE--EeCCHH
Confidence 4578999999996 44 33444444444444431246799999999999999999954433334467888 999999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCC----------CCCcChHhHHHHhhcCCCCcE
Q 013839 128 GACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPD----------SKSLDFAALMDDIKNAPDSSF 197 (435)
Q Consensus 128 ~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~----------~~~~d~e~l~~~i~~~~~~~~ 197 (435)
+|+.++ +..++.+||+|++++|+|..+...++..|++++.+++.+++ ++++|+++|++++. ++++
T Consensus 129 ~al~~~--~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~---~~~~ 203 (447)
T 3b46_A 129 EGILSC--LMGLLNAGDEVIVFEPFFDQYIPNIELCGGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAIT---SKTK 203 (447)
T ss_dssp HHHHHH--HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCC---TTEE
T ss_pred HHHHHH--HHHHcCCCCEEEEeCCCchhHHHHHHHcCCEEEEEeCCCccccccccccccCcccCHHHHHHhhc---cCCe
Confidence 999998 67778899999999999999999999999999999884332 57899999999887 6789
Q ss_pred EEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHh-hhcCCeEEEEecccccccccC
Q 013839 198 FLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIF-LEDEHLIGCAQSYAKSMGLYG 276 (435)
Q Consensus 198 ~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~s~SK~~g~~G 276 (435)
++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. ..++..+ .+..++++++.|+||.++++|
T Consensus 204 ~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~---~~~~~~~~~~~~~~~i~i~S~sK~~~~~G 280 (447)
T 3b46_A 204 AVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDS---FTRIATLSPEIGQLTLTVGSAGKSFAATG 280 (447)
T ss_dssp EEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSC---CCCGGGSCHHHHTTEEEEEEHHHHTTCTT
T ss_pred EEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCCC---CcCHHHcCCCCCCcEEEEecCchhcCCcc
Confidence 999999999999999999999999999999999999999999887641 1122222 223467999999999999999
Q ss_pred CcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013839 277 HRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKL 356 (435)
Q Consensus 277 ~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 356 (435)
+|+||++ +.+++ +++.+.........+++.+.|.++..+|.... ..+++++.+++++++++.+.+.|+++
T Consensus 281 ~riG~~~--~~~~~----l~~~l~~~~~~~~~~~~~~~~~a~~~aL~~~~----~~~~~~~~~~~~~~~~~~l~~~L~~~ 350 (447)
T 3b46_A 281 WRIGWVL--SLNAE----LLSYAAKAHTRICFASPSPLQEACANSINDAL----KIGYFEKMRQEYINKFKIFTSIFDEL 350 (447)
T ss_dssp SCCEEEE--CSCHH----HHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHH----HHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhEEEE--eCCHH----HHHHHHHHHhhccCCCChHHHHHHHHHHhCCc----chHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 9999995 33667 77777776555567789999999888886531 23567889999999999999999988
Q ss_pred CCCCCccccccCcceeEecCCC-------------------H-HHHHHHhhhccEEEeCC-------------C--cEEe
Q 013839 357 GSSLNWEHITNQLGMFCFSGLT-------------------P-YQVDRLAKEFHIYMTQD-------------G--RISM 401 (435)
Q Consensus 357 ~~~~~~~~~~~~~g~~~~~~~~-------------------~-~~~~~ll~~~gI~i~pg-------------g--Ris~ 401 (435)
| +.+..+++|+|+|+.+. . +++..+++++||.+.|| + ||++
T Consensus 351 g----~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~iRls~ 426 (447)
T 3b46_A 351 G----LPYTAPEGTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRFAV 426 (447)
T ss_dssp T----CCEECCSBSSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGGGTTEEEEEC
T ss_pred C----CeecCCCeeEEEEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCCCCCEEEEEE
Confidence 6 45667889999998542 2 34566766789999875 2 9999
Q ss_pred ccCCCCcHHHHHHHHHH
Q 013839 402 AGVTTGNVNYLANAIHE 418 (435)
Q Consensus 402 ~~~~~e~i~~~~~~l~~ 418 (435)
+. +++++++++++|++
T Consensus 427 ~~-~~e~l~~~~~~l~~ 442 (447)
T 3b46_A 427 CK-DDAYLENAVERLKL 442 (447)
T ss_dssp CS-CHHHHHHHHHHGGG
T ss_pred eC-CHHHHHHHHHHHHH
Confidence 76 88999999999876
No 19
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.7e-43 Score=352.42 Aligned_cols=361 Identities=13% Similarity=0.164 Sum_probs=272.0
Q ss_pred CeeeeecceecCCCCCc----------------------ccchHHHHHHHHhcC---CCCCCCCCCcccHHHHHHHHHhH
Q 013839 51 YKINLGVGAYRDDKGRP----------------------VVLQCVREAEAKIAG---SEFLESISASVSTKMVEESVKLV 105 (435)
Q Consensus 51 ~~i~l~~g~~~~~~~~~----------------------~~~~~~~~~~~~~~~---~~~~~Y~~~~g~~~lr~~ia~~l 105 (435)
++|++.+|+|.. .+.. .|...++++.+.+.. .....|+++.|.+++|+++++++
T Consensus 64 ~~i~~nig~p~~-~~~~~~~~~r~~l~l~~~p~~~~~~~~P~~~~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~ 142 (498)
T 3ihj_A 64 EVIRANIGDAQA-MGQQPITFLRQVMALCTYPNLLDSPSFPEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYI 142 (498)
T ss_dssp SCBCCC-----------CCHHHHHHHHHHHCGGGGGCSSSCHHHHHHHHHHHHHC----------CCSCHHHHHHHHHHH
T ss_pred hhhhcCCcCccc-ccCCcchHHHHHHHHhcCccccCcccCCHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 899999999722 2211 244445555444442 13567999999999999999999
Q ss_pred cCCCC-ccccCCCeeeEecCCchhHHHHHHHHHHHhCCCC----EEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCc
Q 013839 106 YGKDS-DVVKEGRSAGVQALSGTGACRLFAEFQRRFHPES----HIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSL 180 (435)
Q Consensus 106 ~~~~~-~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd----~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~ 180 (435)
...++ .+.++++|+ +|+|+++++.++ +..++.+|| +|+++.|+|+.+...++..|++++.+++.++++|++
T Consensus 143 ~~~~gG~~~~~~~i~--~t~G~~~ai~~~--~~~l~~~gd~~~d~Vlv~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~ 218 (498)
T 3ihj_A 143 TRRDGGVPADPDNIY--LTTGASDGISTI--LKILVSGGGKSRTGVMIPIPQYPLYSAVISELDAIQVNYYLDEENCWAL 218 (498)
T ss_dssp HHHTTTCCCCGGGEE--EESSHHHHHHHH--HHHHCCCCGGGSEEEEEEESCCTHHHHHHHHTTCEEEEEECBGGGTTBC
T ss_pred HHhcCCCCCCcccEE--EcCCHHHHHHHH--HHHHcCCCCCCCCEEEEeCCCchhHHHHHHHcCCEEEEeeccccccCCC
Confidence 53331 334478988 999999999988 666778875 999999999999999999999999999865557899
Q ss_pred ChHhHHHHhhcCCC--CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhh-
Q 013839 181 DFAALMDDIKNAPD--SSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLE- 257 (435)
Q Consensus 181 d~e~l~~~i~~~~~--~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~- 257 (435)
|+++|++++++.+. +++++++++||||||.+++.+++++|+++|++|++++|+||+|..+.+++. ....++..+..
T Consensus 219 d~~~le~~l~~~~~~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~~~~~li~De~y~~~~~~~~-~~~~s~~~~~~~ 297 (498)
T 3ihj_A 219 NVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPD-CRFHSFKKVLYE 297 (498)
T ss_dssp CHHHHHHHHHHHTTTSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTT-CCCCCHHHHHHH
T ss_pred CHHHHHHHHHhhhccCCCeEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCcEEEEEcCccccccCCC-CCcCCHHHHHHH
Confidence 99999999974311 578999999999999999999999999999999999999999999988642 11223332211
Q ss_pred ------cCCeEEEEecccccc-cccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCCh----h
Q 013839 258 ------DEHLIGCAQSYAKSM-GLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDP----N 326 (435)
Q Consensus 258 ------~~~~~i~~~s~SK~~-g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~----~ 326 (435)
...++++++|+||.+ |++|+|+||+++.+.+++ +++.+.+... ...+++.++|.++..++..+ .
T Consensus 298 ~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~~~~----l~~~l~~~~~-~~~~~~~~~q~a~~~~l~~~~~g~~ 372 (498)
T 3ihj_A 298 MGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPE----IKGQLVKLLS-VRLCPPVSGQAAMDIVVNPPVAGEE 372 (498)
T ss_dssp TCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEESCCHH----HHHHHHHHHH-HSCCCCHHHHHHHHHHTCCCCTTST
T ss_pred hcccccCceeEEEEeccccccccCcccceEEEEEecCCHH----HHHHHHHHHh-ccCCCCHHHHHHHHHHhcCCccCcc
Confidence 234589999999999 899999999973234788 7777777654 56788999999999998752 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCC---------------CHHH--HHHHhhhc
Q 013839 327 LKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL---------------TPYQ--VDRLAKEF 389 (435)
Q Consensus 327 l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~---------------~~~~--~~~ll~~~ 389 (435)
..+.|.++.+..+++++++++.+.+.|++++ ++.+.++++|+|+|+.+ +.+. +.++++++
T Consensus 373 ~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~---g~~~~~p~gg~~~~~~l~~p~~~~~~~~~~g~~~~~~~~~~ll~~~ 449 (498)
T 3ihj_A 373 SFEQFSREKESVLGNLAKKAKLTEDLFNQVP---GIHCNPLQGAMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEET 449 (498)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHTST---TEECCCCCBSSEECCEECCCHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CcEecCCCeEEEEEEeccCchhhhHHHHhcCCCcHHHHHHHHHHHC
Confidence 3334556677888999999999999999873 27788999999999732 2332 57778889
Q ss_pred cEEEeCC-------C----cEEeccCCCCcHHHHHHHHHHHHHhhhhh
Q 013839 390 HIYMTQD-------G----RISMAGVTTGNVNYLANAIHEVTRSEQET 426 (435)
Q Consensus 390 gI~i~pg-------g----Ris~~~~~~e~i~~~~~~l~~~l~~~~~~ 426 (435)
||.+.|| | |++++. +++++++++++|++++++..++
T Consensus 450 gI~v~pG~~f~~~~~~~~~Ris~~~-~~e~l~~~i~~L~~~~~~~~~~ 496 (498)
T 3ihj_A 450 GICVVPGSGFGQREGTYHFRMTILP-PVEKLKTVLQKVKDFHINFLEK 496 (498)
T ss_dssp CBCCEEGGGTCCCTTCCBEEEECCS-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEeCcccCCCCCCCEEEEEeCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 9999985 1 999964 8899999999999999876543
No 20
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}
Probab=100.00 E-value=5.2e-43 Score=341.69 Aligned_cols=349 Identities=15% Similarity=0.128 Sum_probs=268.7
Q ss_pred chhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccC
Q 013839 36 PINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKE 115 (435)
Q Consensus 36 ~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~ 115 (435)
.++...+++.. +++++|+|+.|.+ +. +.++.+.+.+...+..+ ...|++..|.+++|+++++++....+.+..+
T Consensus 18 ~~~~~~~~~~~-~g~~~i~l~~g~~-~~---~~~~~v~~a~~~~~~~~-~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~ 91 (391)
T 3h14_A 18 DVMEAARRAEE-AGRRIIHMEVGQP-GT---GAPRGAVEALAKSLETD-ALGYTVALGLPALRQRIARLYGEWYGVDLDP 91 (391)
T ss_dssp HHHHHHHHHHH-TTCCCEECCCSSC-SS---CSCHHHHHHHHHHHC-----------CCHHHHHHHHHHHHHHHCCCCCG
T ss_pred HHHHHHHHHHh-cCCCeEEccCCCC-CC---CCCHHHHHHHHHHHhcC-CCCCCCCCChHHHHHHHHHHHHHHhCCCCCH
Confidence 34444455533 5678999999995 32 33444444444444433 4679999999999999999984322222336
Q ss_pred CCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCC
Q 013839 116 GRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDS 195 (435)
Q Consensus 116 ~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~ 195 (435)
++|. +|+||++|+.++ +..++.+||+|+++.|+|.++...++..|++++.++..++.++.+|++++++. +
T Consensus 92 ~~v~--~t~g~~~al~~~--~~~l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~------~ 161 (391)
T 3h14_A 92 GRVV--ITPGSSGGFLLA--FTALFDSGDRVGIGAPGYPSYRQILRALGLVPVDLPTAPENRLQPVPADFAGL------D 161 (391)
T ss_dssp GGEE--EESSHHHHHHHH--HHHHCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEECCGGGTTSCCHHHHTTS------C
T ss_pred HHEE--EecChHHHHHHH--HHHhcCCCCEEEEcCCCCccHHHHHHHcCCEEEEeecCcccCCCCCHHHHHhc------C
Confidence 7888 999999999998 77778899999999999999999999999999999984334578899988664 4
Q ss_pred cEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEeccccccccc
Q 013839 196 SFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLY 275 (435)
Q Consensus 196 ~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~ 275 (435)
++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++.. .+. ....+++++++|+||.+|++
T Consensus 162 ~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~---~~~---~~~~~~~i~~~s~sK~~g~~ 235 (391)
T 3h14_A 162 LAGLMVASPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKA---VTA---LELTDECYVINSFSKYFSMT 235 (391)
T ss_dssp CSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCC---CCG---GGTCSSSEEEEESSSTTCCT
T ss_pred CeEEEECCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCC---cCh---hhcCCCEEEEEechhccCCc
Confidence 678888999999999999999999999999999999999999998876421 111 12357899999999999999
Q ss_pred CCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013839 276 GHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEK 355 (435)
Q Consensus 276 G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 355 (435)
|+|+||+++ +++ +++.+.+.......+++.+.|.++.+++... +++++.+++++++++.+.+.|++
T Consensus 236 G~r~G~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~l~~ 301 (391)
T 3h14_A 236 GWRVGWMVV---PED----QVRVVERIAQNMFICAPHASQVAALAALDCD-------AELQANLDVYKANRKLMLERLPK 301 (391)
T ss_dssp TSCCEEEEC---CGG----GHHHHHHHHHHTTCCCCHHHHHHHHHHTTCH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceeEEEEe---CHH----HHHHHHHHHhhhccCCCHHHHHHHHHHhCCh-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999964 778 7777877766667788999999998888732 67888999999999999999998
Q ss_pred hCCCCCccccccCcceeEecCC-----CHH-HHHHHhhhccEEEeCC---------C--cEEeccCCCCcHHHHHHHHHH
Q 013839 356 LGSSLNWEHITNQLGMFCFSGL-----TPY-QVDRLAKEFHIYMTQD---------G--RISMAGVTTGNVNYLANAIHE 418 (435)
Q Consensus 356 ~~~~~~~~~~~~~~g~~~~~~~-----~~~-~~~~ll~~~gI~i~pg---------g--Ris~~~~~~e~i~~~~~~l~~ 418 (435)
++. .....+++++|+|+.+ +.+ +...+++++||.+.|| + ||+++. +++++++++++|++
T Consensus 302 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~iRis~~~-~~~~i~~~l~~l~~ 377 (391)
T 3h14_A 302 AGF---TRIAPPDGAFYVYADVSDLTDDSRAFAAEILEKAGVAVTPGLDFDPERGAGTLRFSYAR-ATADIEEGLDRLEA 377 (391)
T ss_dssp HTC---CCBCCCCBTTEEEEECTTTCSCHHHHHHHHHHHHCEECEEGGGTCTTTGGGEEEEECCS-CHHHHHHHHHHHHH
T ss_pred cCC---CcccCCCeeEEEEEecCccCCCHHHHHHHHHHHCCEEEcCchhhCCCCCCCeEEEEecC-CHHHHHHHHHHHHH
Confidence 864 2345678889998743 444 4466676679999875 1 999987 88999999999999
Q ss_pred HHHhhh
Q 013839 419 VTRSEQ 424 (435)
Q Consensus 419 ~l~~~~ 424 (435)
++++..
T Consensus 378 ~~~~~~ 383 (391)
T 3h14_A 378 FMQARG 383 (391)
T ss_dssp HHHHC-
T ss_pred HHHHhc
Confidence 997654
No 21
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*
Probab=100.00 E-value=6.8e-43 Score=340.59 Aligned_cols=364 Identities=16% Similarity=0.148 Sum_probs=282.1
Q ss_pred cCCCCCCchhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCC
Q 013839 29 VAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGK 108 (435)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~ 108 (435)
+...+++.+..+.+..++. ++.|+|+.|.+ +. +.++.+.+.+...+... ...|++..|.+++|+++++++...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~--~~~i~l~~~~~-~~---~~~~~v~~a~~~~~~~~-~~~y~~~~g~~~l~~~la~~~~~~ 79 (389)
T 1gd9_A 7 LELVSASEIRKLFDIAAGM--KDVISLGIGEP-DF---DTPQHIKEYAKEALDKG-LTHYGPNIGLLELREAIAEKLKKQ 79 (389)
T ss_dssp HHHSCCCHHHHHHHHHHTC--SSCEECCCCSC-SS---CCCHHHHHHHHHHHHTT-CCSCCCTTCCHHHHHHHHHHHHHH
T ss_pred hHhCChhHHHHHHHHHhhh--cCeEecCCCCC-CC---CCCHHHHHHHHHHHhCC-CCCCCCCCCcHHHHHHHHHHHHHH
Confidence 3334555566666666532 68999999995 32 33334444444444433 456988889999999999998322
Q ss_pred CCccccCCC-eeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHH
Q 013839 109 DSDVVKEGR-SAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMD 187 (435)
Q Consensus 109 ~~~~~~~~~-v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~ 187 (435)
.+.+.++++ +. +++||++|+.++ +..++.+||+|++++|+|.++...++..|++++.++..+++++.+|+++|++
T Consensus 80 ~g~~~~~~~~v~--~~~g~~~a~~~~--~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~ 155 (389)
T 1gd9_A 80 NGIEADPKTEIM--VLLGANQAFLMG--LSAFLKDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKK 155 (389)
T ss_dssp HCCCCCTTTSEE--EESSTTHHHHHH--HTTTCCTTCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHHHH
T ss_pred hCCCCCCCCeEE--EcCChHHHHHHH--HHHhCCCCCEEEEcCCCchhHHHHHHHCCCEEEEeccCCccCCCCCHHHHHH
Confidence 111123667 88 999999999988 6666789999999999999999999999999999988422357899999999
Q ss_pred HhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEec
Q 013839 188 DIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQS 267 (435)
Q Consensus 188 ~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s 267 (435)
++. ++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. ...++..+.+..+++++++|
T Consensus 156 ~l~---~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~s 230 (389)
T 1gd9_A 156 YVT---DKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDA--RHYSIASLDGMFERTITVNG 230 (389)
T ss_dssp HCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTC--CCCCGGGSTTCGGGEEEEEE
T ss_pred hcC---cCceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCC--CCCCHhhccCCCCCEEEEec
Confidence 997 5688999999999999999999999999999999999999999999887531 11223333222467999999
Q ss_pred ccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHH
Q 013839 268 YAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRT 347 (435)
Q Consensus 268 ~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 347 (435)
+||.+|++|+|+||+++ +++ +++.+.........+++.+.|.++..+|.... ..+++++.+++++++++
T Consensus 231 ~sK~~~~~G~r~G~~~~---~~~----~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~----~~~~~~~~~~~~~~~~~ 299 (389)
T 1gd9_A 231 FSKTFAMTGWRLGFVAA---PSW----IIERMVKFQMYNATCPVTFIQYAAAKALKDER----SWKAVEEMRKEYDRRRK 299 (389)
T ss_dssp STTTTTCGGGCCEEEEC---CHH----HHHHHHHHHTTTTCSCCHHHHHHHHHHHTCHH----HHHHHHHHHHHHHHHHH
T ss_pred ChhhcCCcccceEEEEE---CHH----HHHHHHHHHhhhccCCCHHHHHHHHHHHhCCC----cchHHHHHHHHHHHHHH
Confidence 99999999999999964 777 88888776665567888999999999998642 11367888999999999
Q ss_pred HHHHHHHhhCCCCCccccccCcceeEecCC-----CHHH-HHHHhhhccEEEeCC--------C--cEEeccCCCCcHHH
Q 013839 348 TLRQNLEKLGSSLNWEHITNQLGMFCFSGL-----TPYQ-VDRLAKEFHIYMTQD--------G--RISMAGVTTGNVNY 411 (435)
Q Consensus 348 ~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~-~~~ll~~~gI~i~pg--------g--Ris~~~~~~e~i~~ 411 (435)
.+.+.|+++| +.+..+++|+|+|+.+ +.+. ...+++++||.+.|| + ||+++. +++++++
T Consensus 300 ~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~-~~~~i~~ 374 (389)
T 1gd9_A 300 LVWKRLNEMG----LPTVKPKGAFYIFPRIRDTGLTSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISYAT-AYEKLEE 374 (389)
T ss_dssp HHHHHHHHTT----CCCCCCCBTTEECCBCGGGTCCHHHHHHHHHHHTCEECEEGGGGCGGGTTBEEEECCS-CHHHHHH
T ss_pred HHHHHHHHcC----CeecCCCeeeEEEEeccCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEEEEecC-CHHHHHH
Confidence 9999999886 4566788899998755 4444 455654789999875 1 999987 8899999
Q ss_pred HHHHHHHHHHhhh
Q 013839 412 LANAIHEVTRSEQ 424 (435)
Q Consensus 412 ~~~~l~~~l~~~~ 424 (435)
++++|++++++.+
T Consensus 375 ~l~~l~~~~~~~~ 387 (389)
T 1gd9_A 375 AMDRMERVLKERK 387 (389)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcc
Confidence 9999999887543
No 22
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*
Probab=100.00 E-value=4.3e-43 Score=347.96 Aligned_cols=360 Identities=13% Similarity=0.127 Sum_probs=277.0
Q ss_pred CCCCchhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHh-cCC--CCCCCCCCcccHHHHHHHHHhHcCC
Q 013839 32 AAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKI-AGS--EFLESISASVSTKMVEESVKLVYGK 108 (435)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~Y~~~~g~~~lr~~ia~~l~~~ 108 (435)
..++.+.++..... ++++|+|+.|.| +.. ..|.+.+.+++... ... ...+|++..|.++||+++++++...
T Consensus 61 ~~~s~~~~~~~~~~---~~~~i~l~~g~p-~~~--~~p~~~v~~a~~~~l~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~ 134 (448)
T 3aow_A 61 MRASEVRELLKLVE---TSDIISLAGGLP-NPK--TFPKEIIRDILVEIMEKYADKALQYGTTKGFTPLRETLMKWLGKR 134 (448)
T ss_dssp CCCCHHHHHHHHHH---TSSSEECCCCCC-CGG--GSCHHHHHHHHHHHHHHSHHHHHSCCCTTCCHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHhcc---CCCcEeCCCCCC-Cch--hCCHHHHHHHHHHHHHhhhHHHhCCCCCCCcHHHHHHHHHHHHHh
Confidence 44455545444442 467999999997 322 23444444444333 221 1357999999999999999998222
Q ss_pred CCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHH
Q 013839 109 DSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDD 188 (435)
Q Consensus 109 ~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~ 188 (435)
.+.+ .+++|+ +|+|+++|+.++ +..++.+||+|+++.|+|.++...++..|++++.++.. ++ ++|++.|+++
T Consensus 135 ~g~~-~~~~v~--~t~G~~~al~~~--~~~l~~~Gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~-~~--g~d~~~L~~~ 206 (448)
T 3aow_A 135 YGIS-QDNDIM--ITSGSQQALDLI--GRVFLNPGDIVVVEAPTYLAALQAFNFYEPQYIQIPLD-DE--GMKVEILEEK 206 (448)
T ss_dssp HCCC-TTSEEE--EESSHHHHHHHH--HHHHCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEE-TT--EECHHHHHHH
T ss_pred cCcC-ChhhEE--EeCcHHHHHHHH--HHHHcCCCCEEEEeCCChHHHHHHHHHcCCEEEEeccC-CC--CCCHHHHHHH
Confidence 1111 267888 999999999998 66678899999999999999999999999999999983 33 5999999999
Q ss_pred hh----cCCCCcEEE-EeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEE
Q 013839 189 IK----NAPDSSFFL-LHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIG 263 (435)
Q Consensus 189 i~----~~~~~~~~v-~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i 263 (435)
++ +. .+++++ ++++|+||||.+++.+++++|+++|++||+++|+||+|..+.+++. ...++..+ +..++++
T Consensus 207 l~~~~~~~-~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~--~~~~~~~~-~~~~~vi 282 (448)
T 3aow_A 207 LKELKSQG-KKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGN--PEKKIKAL-DNEGRVI 282 (448)
T ss_dssp HHHHHHTT-CCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSC--CCCCTGGG-CTTSCEE
T ss_pred HhhhhccC-CCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCC--CCcCHHhc-CCCCCEE
Confidence 86 32 357776 6899999999999999999999999999999999999999987542 12233333 3346899
Q ss_pred EEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Q 013839 264 CAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQ 343 (435)
Q Consensus 264 ~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~ 343 (435)
+++||||.++ +|+|+||+++ +++ +++.+.........+++.++|.++..+|.... +.+++++.+++++
T Consensus 283 ~~~S~SK~~~-~GlriG~v~~---~~~----l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~----~~~~~~~~~~~~~ 350 (448)
T 3aow_A 283 YLGTFSKILA-PGFRIGWMVG---DPG----IIRKMEIAKQSTDLCTNVFGQVVAWRYVDGGY----LEKHIPEIRKFYK 350 (448)
T ss_dssp EEEESTTTTC-GGGCCEEEEE---CHH----HHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTH----HHHHHHHHHHHHH
T ss_pred EEccchhhcc-ccccEEEEEe---CHH----HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC----HHHHHHHHHHHHH
Confidence 9999999999 9999999975 788 77777776655566789999999999997642 4577889999999
Q ss_pred HHHHHHHHHHHhhCCCCCccccccCcceeEecCC----CHH-HHHHHhhhccEEEeCC--------C----cEEeccCCC
Q 013839 344 RKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL----TPY-QVDRLAKEFHIYMTQD--------G----RISMAGVTT 406 (435)
Q Consensus 344 ~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~----~~~-~~~~ll~~~gI~i~pg--------g----Ris~~~~~~ 406 (435)
++++.+.+.|++.. +.++.+..+.+|+|+|+.+ +.+ ++..+++ +||.+.|| + |++++..++
T Consensus 351 ~~~~~l~~~L~~~~-~~g~~~~~p~~g~~~~v~~~~~~~~~~l~~~l~~-~gV~v~pg~~f~~~~~~~~~iRls~~~~~~ 428 (448)
T 3aow_A 351 PRRDAMLEALEEFM-PEGVKWTKPEGGMFIWVTLPDGIDSKKMLERAIK-KGVAYVPGEAFYAHRDVKNTMRLNFTYVDE 428 (448)
T ss_dssp HHHHHHHHHHHHHC-CTTCEECCCSBSSEEEEECSTTCCHHHHHHHHHH-TTEECEEGGGGSTTCCCCSEEEEECSSSCT
T ss_pred HHHHHHHHHHHHhC-CCCeEEeCCCccEEEEEEcCCCCCHHHHHHHHHH-CCcEEEcchhhcCCCCCCCEEEEEeCCCCH
Confidence 99999999998751 1125666788999999865 344 4466654 69999875 1 999976578
Q ss_pred CcHHHHHHHHHHHHHhh
Q 013839 407 GNVNYLANAIHEVTRSE 423 (435)
Q Consensus 407 e~i~~~~~~l~~~l~~~ 423 (435)
+++++++++|++++++.
T Consensus 429 e~i~~~~~~L~~~l~~~ 445 (448)
T 3aow_A 429 DKIMEGIKRLAETIKEE 445 (448)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999998764
No 23
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}
Probab=100.00 E-value=3.4e-43 Score=345.46 Aligned_cols=367 Identities=12% Similarity=0.123 Sum_probs=270.0
Q ss_pred cccccCCCCCCchhh---HHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhc-CCCCCCCCCCcccHHHHHH
Q 013839 25 WWDHVAPAAKDPING---VTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIA-GSEFLESISASVSTKMVEE 100 (435)
Q Consensus 25 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Y~~~~g~~~lr~~ 100 (435)
+.+++...+++.... ..+++.. ++++.|||+.|.+ +. .. ++.+.+++.... .....+|++..|.+++|++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~idl~~g~~-~~---~~-~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~ 83 (412)
T 2x5d_A 10 RFARIDRLPPYVFNITAELKMAARR-RGEDIIDLSMGNP-DG---PT-PPHIVEKLCTVAQREDTHGYSTSRGIPRLRRA 83 (412)
T ss_dssp -----------CHHHHHHHHHHHHH-TTCCCEECSSCCC-CS---CC-CHHHHHHHHHTC---------CTTCCHHHHHH
T ss_pred hhHHHhhcCchHHHHHHHHHHHHhh-cCCCEEecCCCCC-CC---CC-CHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHH
Confidence 444444444443433 2333322 4678999999995 32 33 334444444433 3224569888999999999
Q ss_pred HHHhHcCCCCccccC-CCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCC
Q 013839 101 SVKLVYGKDSDVVKE-GRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKS 179 (435)
Q Consensus 101 ia~~l~~~~~~~~~~-~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~ 179 (435)
+++++....+.++++ +++. +++||++|+.++ +..++.+||+|+++.|+|.++...++..|++++.++..+++++.
T Consensus 84 ia~~~~~~~g~~~~~~~~v~--~t~g~~~a~~~~--~~~~~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 159 (412)
T 2x5d_A 84 ISHWYRDRYDVQIDPESEAI--VTIGSKEGLAHL--MLATLDHGDTILVPNPSYPIHIYGAVIAGAQVRSVPLVPGIDFF 159 (412)
T ss_dssp HHHHHHHHHCCCCCTTTSEE--EESCHHHHHHHH--HHHHCCTTCEEEEEESCCHHHHHHHHHHTCEEEEEECSTTSCHH
T ss_pred HHHHHHHHhCCCCCCCcCEE--EcCChHHHHHHH--HHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEeecCCccCCC
Confidence 999983211111235 5888 999999999998 66678899999999999999999999999999999884222455
Q ss_pred cChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcC
Q 013839 180 LDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDE 259 (435)
Q Consensus 180 ~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~ 259 (435)
+|+++|++++. ++++++++++||||||.+++.+++++|+++|++||+++|+||+|..+.+++. ...++..+....
T Consensus 160 ~d~~~l~~~i~---~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~~~ 234 (412)
T 2x5d_A 160 NELERAIRESI---PKPRMMILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGW--KAPSIMQVPGAK 234 (412)
T ss_dssp HHHHHHHHTEE---SCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC--CCCCGGGSTTGG
T ss_pred CCHHHHHHhcc---cCceEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC--CCCChhhccCcc
Confidence 88999999887 5678888899999999999999999999999999999999999999887531 112333332224
Q ss_pred CeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHH
Q 013839 260 HLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMA 339 (435)
Q Consensus 260 ~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~ 339 (435)
+++++++|+||.+|++|+|+||+++ +++ +++.+.........+.+.++|.++..+|.... +++++.+
T Consensus 235 ~~~i~~~s~sK~~~~~G~r~G~~~~---~~~----~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~------~~~~~~~ 301 (412)
T 2x5d_A 235 DIAVEFFTLSKSYNMAGWRIGFMVG---NPE----LVSALARIKSYHDYGTFTPLQVAAIAALEGDQ------QCVRDIA 301 (412)
T ss_dssp GTEEEEEECC-CCSCTTSCCEEEEE---CHH----HHHHHHHHHHHHCCCCCHHHHHHHHHHHHSCS------HHHHHHH
T ss_pred CcEEEEecCccccCCcccceEEEEc---CHH----HHHHHHHHHhhhccCCCHHHHHHHHHHHhCCH------HHHHHHH
Confidence 6799999999999999999999974 888 77777776655567889999999998887543 5678888
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCC-------CHH-HHHHHhhhccEEEeCC--------C--cEEe
Q 013839 340 DRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL-------TPY-QVDRLAKEFHIYMTQD--------G--RISM 401 (435)
Q Consensus 340 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~-------~~~-~~~~ll~~~gI~i~pg--------g--Ris~ 401 (435)
++++++++.+.+.|++++ +.+..+++|+|+|+.+ +.+ ++..+++++||.+.|| + ||++
T Consensus 302 ~~~~~~~~~l~~~L~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~iRis~ 377 (412)
T 2x5d_A 302 RQYQQRRDVLVKGLREAG----WMVENPKASMYVWAKIPEPYAHLGSLEFAKKLLQDAKVSVSPGIGFGDYGDDHVRFAL 377 (412)
T ss_dssp HHHHHHHHHHHHHHHHHT----CCCCCCSBSSEEEEECCTTTGGGCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEEC
T ss_pred HHHHHHHHHHHHHHHHCC----CEecCCCeeeEEEEEcCCccCCCCHHHHHHHHHHHCCEEEeCchhhCCCCCCeEEEEe
Confidence 999999999999999886 4566788899998755 333 4466666689999975 2 9999
Q ss_pred ccCCCCcHHHHHHHHHHHHHhhh
Q 013839 402 AGVTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 402 ~~~~~e~i~~~~~~l~~~l~~~~ 424 (435)
+. +++++++++++|++++++..
T Consensus 378 ~~-~~~~l~~~l~~l~~~l~~~~ 399 (412)
T 2x5d_A 378 IE-NRDRLRQAVRGIKAMFRADG 399 (412)
T ss_dssp CS-CHHHHHHHHHHHHHHHHHTT
T ss_pred cC-CHHHHHHHHHHHHHHHHhcC
Confidence 87 88999999999999997654
No 24
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Probab=100.00 E-value=7.1e-44 Score=349.93 Aligned_cols=363 Identities=12% Similarity=0.038 Sum_probs=281.1
Q ss_pred ccCCCCCCchhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcC
Q 013839 28 HVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYG 107 (435)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~ 107 (435)
++...+++.+....+.. .++++|+|+.|.| +. +.++.+.+.+.+.+.......|++..|.+++|+++++++..
T Consensus 4 ~~~~~~~~~~~~~~~~~---~~~~~i~l~~~~~-~~---~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~la~~~~~ 76 (410)
T 3e2y_A 4 RIEGLDSNVWVEFTKLA---ADPSVVNLGQGFP-DI---SPPSYVKEELSKAAFIDNMNQYTRGFGHPALVKALSCLYGK 76 (410)
T ss_dssp GGTTCCCCHHHHTTTTT---TSTTSEECSSCCC-CS---CCCHHHHHHHHHHHTCGGGGSCCCTTCCHHHHHHHHHHHHH
T ss_pred hhccCCccHHHHHHHHh---cCCCeEEecCCCC-CC---CCCHHHHHHHHHHHhCccccCCCCCCChHHHHHHHHHHHHH
Confidence 34444544443333222 4578999999995 43 34444444444444443355799989999999999999843
Q ss_pred CCCccccC-CCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecC---------CCC
Q 013839 108 KDSDVVKE-GRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYD---------PDS 177 (435)
Q Consensus 108 ~~~~~~~~-~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~---------~~~ 177 (435)
..+.++++ ++|. +++||++|+.++ +..++.+||+|+++.|+|..+...++..|++++.+++.. +++
T Consensus 77 ~~~~~~~~~~~i~--~~~g~~~a~~~~--~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~ 152 (410)
T 3e2y_A 77 IYQRQIDPNEEIL--VAVGAYGSLFNS--IQGLVDPGDEVIIMVPFYDCYEPMVRMAGAVPVFIPLRSKPTDGMKWTSSD 152 (410)
T ss_dssp HHTSCCCTTTSEE--EESHHHHHHHHH--HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEECCCCSSCCBGGG
T ss_pred HhCCCCCCCCCEE--EeCCcHHHHHHH--HHHhcCCCCEEEEeCCCchhhHHHHHHcCCEEEEEeccccccccccccccC
Confidence 22222335 6888 999999999998 666788999999999999999999999999999998742 135
Q ss_pred CCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhh
Q 013839 178 KSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLE 257 (435)
Q Consensus 178 ~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~ 257 (435)
+.+|++++++++. ++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. ...++..+..
T Consensus 153 ~~~d~~~l~~~~~---~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~--~~~~~~~~~~ 227 (410)
T 3e2y_A 153 WTFDPRELESKFS---SKTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGH--THVKIATLPG 227 (410)
T ss_dssp EECCHHHHHTTCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC--CCCCGGGSTT
T ss_pred CcCCHHHHHhhcC---CCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCC--CCCCHHHcCC
Confidence 6789999999886 6789999999999999999999999999999999999999999999887642 2223444444
Q ss_pred cCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChh-hHHHHHHHHH
Q 013839 258 DEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPN-LKSLWIDEVK 336 (435)
Q Consensus 258 ~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~-l~~~~~~~~~ 336 (435)
..++++++.|+||.+|++|+|+||+++ +++ +++.+.........+++.+.|.++..+|.+.. ....+.++++
T Consensus 228 ~~~~~i~~~S~sK~~g~~G~r~G~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~ 300 (410)
T 3e2y_A 228 MWERTITIGSAGKTFSVTGWKLGWSIG---PAH----LIKHLQTVQQNSFYTCATPLQAALAEAFWIDIKRMDDPECYFN 300 (410)
T ss_dssp CGGGEEEEEEHHHHSSCGGGCCEEEEC---CHH----HHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHH
T ss_pred ccCeEEEEecchhhcCCCCceEEEEEE---CHH----HHHHHHHHHHhhccCCChHHHHHHHHHHHhhhccccchHHHHH
Confidence 457899999999999999999999964 888 88888777666677889999999988886300 0000125678
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCCC----------------HHHHHHHhhhccEEEeCC----
Q 013839 337 IMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLT----------------PYQVDRLAKEFHIYMTQD---- 396 (435)
Q Consensus 337 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~----------------~~~~~~ll~~~gI~i~pg---- 396 (435)
+.+++++++++.+.+.|+++| +.+..+++|+|+|+.+. .+++..+++++||.+.||
T Consensus 301 ~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~ 376 (410)
T 3e2y_A 301 SLPKELEVKRDRMVRLLNSVG----LKPIVPDGGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFC 376 (410)
T ss_dssp HHHHHHHHHHHHHHHHHHTTT----CEEEBCSBSSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHCC----CeecCCCccEEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEEeCchhhC
Confidence 888999999999999999886 56678899999987542 156677888899999875
Q ss_pred ---------C--cEEeccCCCCcHHHHHHHHHH
Q 013839 397 ---------G--RISMAGVTTGNVNYLANAIHE 418 (435)
Q Consensus 397 ---------g--Ris~~~~~~e~i~~~~~~l~~ 418 (435)
+ ||+++. +++++++++++|++
T Consensus 377 ~~~~~~~~~~~iRis~~~-~~e~l~~~l~~l~~ 408 (410)
T 3e2y_A 377 DSKSKPHFEKLVRFCFIK-KDSTLDAAEEIFRA 408 (410)
T ss_dssp CTTTHHHHTTEEEEECCC-CHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCEEEEEEcC-CHHHHHHHHHHHHh
Confidence 1 999977 89999999999875
No 25
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=100.00 E-value=8e-43 Score=340.88 Aligned_cols=339 Identities=13% Similarity=0.079 Sum_probs=271.3
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCcc-ccCC-CeeeEecC
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDV-VKEG-RSAGVQAL 124 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~-~~~~-~v~~~~t~ 124 (435)
++++++|+|+.|.+ +. +.++ .+.+++.+.... ...|++..|.+++|+++++++....+.+ +.++ +|+ +|+
T Consensus 27 ~~g~~~i~l~~~~~-~~---~~~~-~v~~a~~~~~~~-~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~~i~--~t~ 98 (396)
T 3jtx_A 27 PEGMEAVPLHIGEP-KH---PTPK-VITDALTASLHE-LEKYPLTAGLPELRQACANWLKRRYDGLTVDADNEIL--PVL 98 (396)
T ss_dssp CTTCCCEECSCCSC-CS---CCCH-HHHHHHHHTGGG-GGSCCCTTCCHHHHHHHHHHHHHHTTTCCCCTTTSEE--EES
T ss_pred ccCCCeEEeCCcCC-CC---CCCH-HHHHHHHHHhhh-ccCCCCCCCcHHHHHHHHHHHHHhcCCCCCCCCCeEE--EcC
Confidence 45789999999995 33 3333 344444443333 5679999999999999999984332222 3366 888 999
Q ss_pred CchhHHHHHHHHHHHhCCC-----CEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEE
Q 013839 125 SGTGACRLFAEFQRRFHPE-----SHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFL 199 (435)
Q Consensus 125 gg~~a~~~~~~~~~~~~~g-----d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v 199 (435)
|+++++.++ +..++.+| |+|+++.|+|.++...++..|++++.+++ +++++.+|+++|++++. ++++++
T Consensus 99 g~~~al~~~--~~~~~~~g~~~~~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~-~~~g~~~d~~~l~~~~~---~~~~~v 172 (396)
T 3jtx_A 99 GSREALFSF--VQTVLNPVSDGIKPAIVSPNPFYQIYEGATLLGGGEIHFANC-PAPSFNPDWRSISEEVW---KRTKLV 172 (396)
T ss_dssp SHHHHHHHH--HHHHCCC---CCCCEEEEEESCCHHHHHHHHHTTCEEEEEEC-CTTTCCCCGGGSCHHHH---HTEEEE
T ss_pred CcHHHHHHH--HHHHhCCCCccCCCEEEEcCCCcHhHHHHHHHcCCEEEEeec-CCCCCccCHHHHHHhhc---cCcEEE
Confidence 999999998 66778887 79999999999999999999999999998 56677889999999998 578999
Q ss_pred EeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHH---HhhhcCCeEEEEecccccccccC
Q 013839 200 LHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIR---IFLEDEHLIGCAQSYAKSMGLYG 276 (435)
Q Consensus 200 ~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~s~SK~~g~~G 276 (435)
++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. ....... .+....++++++.|+||.++++|
T Consensus 173 ~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G 251 (396)
T 3jtx_A 173 FVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGN-KPLGCLQAAAQLGRSRQKLLMFTSLSKRSNVPG 251 (396)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTC-CCCCHHHHHHHTTCCCTTEEEEEESTTTSSCGG
T ss_pred EEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCC-CCchHHhhhhhcccccCcEEEEeccccccCCcc
Confidence 9999999999999999999999999999999999999999887641 1111111 11223578999999999999999
Q ss_pred CcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013839 277 HRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKL 356 (435)
Q Consensus 277 ~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 356 (435)
+|+||+++ +++ +++.+.+.......+++.++|.++..++... +++++.+++++++++.+.+.|+++
T Consensus 252 ~r~G~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~l~~~ 317 (396)
T 3jtx_A 252 LRSGFVAG---DAE----LLKNFLLYRTYHGSAMSIPVQRASIAAWDDE-------QHVIDNRRLYQEKFERVIPILQQV 317 (396)
T ss_dssp GCCEEEEE---CHH----HHHHHHHHHHHHTCCCCHHHHHHHHHHHHCC-------HHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cceEEEEe---CHH----HHHHHHHHHhhcccCCCHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999964 888 8888887666666788999999999988763 677888999999999999999775
Q ss_pred CCCCCccccccCcceeEecCCC----HHHHHHHhhhccEEEeCC--------------C--cEEeccCCCCcHHHHHHHH
Q 013839 357 GSSLNWEHITNQLGMFCFSGLT----PYQVDRLAKEFHIYMTQD--------------G--RISMAGVTTGNVNYLANAI 416 (435)
Q Consensus 357 ~~~~~~~~~~~~~g~~~~~~~~----~~~~~~ll~~~gI~i~pg--------------g--Ris~~~~~~e~i~~~~~~l 416 (435)
. .+..+++|+|+|+.+. .+++..+++++||.+.|| + ||+++. +++++++++++|
T Consensus 318 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iRis~~~-~~~~i~~~l~~l 391 (396)
T 3jtx_A 318 F-----DVKLPDASFYIWLKVPDGDDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVA-DVATCVKAAEDI 391 (396)
T ss_dssp S-----CCCCCSSSSEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEEEECCS-CHHHHHHHHHHH
T ss_pred C-----CccCCCeeEEEEEECCCCCHHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEEEEEcC-CHHHHHHHHHHH
Confidence 2 3556788999998763 345577767789999774 2 999977 899999999999
Q ss_pred HHHH
Q 013839 417 HEVT 420 (435)
Q Consensus 417 ~~~l 420 (435)
++++
T Consensus 392 ~~~l 395 (396)
T 3jtx_A 392 VSLY 395 (396)
T ss_dssp HHHC
T ss_pred HHHh
Confidence 8764
No 26
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=100.00 E-value=1.9e-43 Score=346.43 Aligned_cols=344 Identities=13% Similarity=0.070 Sum_probs=272.9
Q ss_pred CeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccC-CCeeeEecCCchhH
Q 013839 51 YKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKE-GRSAGVQALSGTGA 129 (435)
Q Consensus 51 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~-~~v~~~~t~gg~~a 129 (435)
..|||+.|+| ++.+.++.+.+.+.+.+.......|++..|.+++++++++++....+.++++ ++++ +++||++|
T Consensus 40 ~~id~~~g~~---~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~l~~~l~~~~g~~~~~~~~i~--~~~g~~~a 114 (407)
T 3nra_A 40 RPVDFSHGDV---DAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLI--ITPGTQGA 114 (407)
T ss_dssp CCEETTSCCT---TTSCCCTTHHHHHHHHHHHTHHHHSCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEE--EESHHHHH
T ss_pred ceeeecCcCC---CCCCCcHHHHHHHHHHHhcCCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEE--EeCCcHHH
Confidence 4799999997 2234444555554555443223469888999999999999983222222223 6888 99999999
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecC----CCCCCcChHhHHHHhhcCCCCcEEEEeCCCC
Q 013839 130 CRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYD----PDSKSLDFAALMDDIKNAPDSSFFLLHPSAH 205 (435)
Q Consensus 130 ~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~----~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~ 205 (435)
+.++ +.+++.+||+|+++.|+|.++...++..|++++.++... ++++++|+++|++++. ++++++++++||
T Consensus 115 ~~~~--~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~---~~~~~v~~~~p~ 189 (407)
T 3nra_A 115 LFLA--VAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFK---AGARVFLFSNPN 189 (407)
T ss_dssp HHHH--HHTTCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHH---TTCCEEEEESSC
T ss_pred HHHH--HHHhCCCCCEEEEcCCcccchHHHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHh---hCCcEEEEcCCC
Confidence 9988 666788999999999999999999999999999998731 3568899999999998 467888999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhh-hcCCeEEEEecccccccccCCcccEEEE
Q 013839 206 NPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFL-EDEHLIGCAQSYAKSMGLYGHRVGCLSI 284 (435)
Q Consensus 206 NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~s~SK~~g~~G~RvG~~~~ 284 (435)
||||.+++.+++++|+++|++||+++|+||+|..+.+++. ...++..+. ...++++++.|+||.+|++|+|+||+++
T Consensus 190 nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~--~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~ 267 (407)
T 3nra_A 190 NPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGA--SYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAFG 267 (407)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTC--CCCCGGGCTTSCGGGEEEEECSSSTTCCGGGCCEEEEE
T ss_pred CCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCC--CCCChhhcCcccCCcEEEEeCcccccCCCeeeEEEEEc
Confidence 9999999999999999999999999999999999887642 222333332 3457899999999999999999999974
Q ss_pred EecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccc
Q 013839 285 LCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEH 364 (435)
Q Consensus 285 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 364 (435)
+++ +++.+.........+++.+.|.++..+|.... +++++.+++++++++.+.+.|++++ .+.+
T Consensus 268 ---~~~----~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~------~~~~~~~~~~~~~~~~l~~~L~~~~---~~~~ 331 (407)
T 3nra_A 268 ---SRA----IIARMEKLQAIVSLRAAGYSQAVLRGWFDEAP------GWMEDRIARHQAIRDELLHVLRGCE---GVFA 331 (407)
T ss_dssp ---CHH----HHHHHHHHHHHHTSSSCHHHHGGGGGTTCCCT------THHHHHHHHHHHHHHHHHHHHHTST---TCBC
T ss_pred ---CHH----HHHHHHHHHhhhccCCChHHHHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHhcCC---Ccee
Confidence 888 88888877766667788888888888887543 4567778888999999999998873 2567
Q ss_pred cccCcceeEecCC-----CHH-HHHHHhhhccEEEeCCC----------cEEeccCCCCcHHHHHHHHHHHHHhh
Q 013839 365 ITNQLGMFCFSGL-----TPY-QVDRLAKEFHIYMTQDG----------RISMAGVTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 365 ~~~~~g~~~~~~~-----~~~-~~~~ll~~~gI~i~pgg----------Ris~~~~~~e~i~~~~~~l~~~l~~~ 423 (435)
..+++++|+|+.+ +.+ +...+++++||.+.||. ||+++. +++++++++++|++++++.
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~-~~~~i~~~~~~l~~~~~~~ 405 (407)
T 3nra_A 332 RTPQAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSPHTADSVRLNFSQ-DHEAAVAAARRIVTLVERY 405 (407)
T ss_dssp CCCSBSSEECCBCCCBSSCHHHHHHHHHHHHCEECEEGGGTCTTCTTBEEEECCS-CHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeeEEEEEeCCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEeCC-CHHHHHHHHHHHHHHHHHh
Confidence 7788889999855 333 44666566799999751 999987 8999999999999998764
No 27
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=100.00 E-value=1.4e-42 Score=338.19 Aligned_cols=354 Identities=14% Similarity=0.124 Sum_probs=274.4
Q ss_pred hhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCC
Q 013839 38 NGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGR 117 (435)
Q Consensus 38 ~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~ 117 (435)
....++... ++++.|+|+.|.+ +. +.++.+.+.+...+..+ ...|++..|.+++|+++++++....+.+..+++
T Consensus 19 ~~~~~~~~~-~g~~~i~l~~~~~-~~---~~~~~v~~a~~~~~~~~-~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~ 92 (388)
T 1j32_A 19 DAKAKAMKA-EGIDVCSFSAGEP-DF---NTPKHIVEAAKAALEQG-KTRYGPAAGEPRLREAIAQKLQRDNGLCYGADN 92 (388)
T ss_dssp HHHHHHHHT-TTCCCEECCCSSC-SS---CCCHHHHHHHHHHHHTT-CCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGG
T ss_pred HHHHHHHHh-cCCCEEECCCCCC-CC---CCCHHHHHHHHHHHhcC-CCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhh
Confidence 333444432 4678999999996 33 33334444444444333 456999889999999999998422111223678
Q ss_pred eeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcE
Q 013839 118 SAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSF 197 (435)
Q Consensus 118 v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~ 197 (435)
+. +++||++|+.++ +..++.+||+|++++|+|..+...++..|++++.++...++++.+|+++|+++++ ++++
T Consensus 93 v~--~~~g~~~a~~~~--~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~---~~~~ 165 (388)
T 1j32_A 93 IL--VTNGGKQSIFNL--MLAMIEPGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAIT---PKTK 165 (388)
T ss_dssp EE--EESHHHHHHHHH--HHHHCCTTCEEEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCC---TTEE
T ss_pred EE--EcCCHHHHHHHH--HHHhcCCCCEEEEcCCCChhHHHHHHHcCCEEEEecCCcccCCCCCHHHHHHhcC---cCce
Confidence 88 999999999998 6666889999999999999999999999999999987433357899999999997 5789
Q ss_pred EEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhh-cCCeEEEEecccccccccC
Q 013839 198 FLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLE-DEHLIGCAQSYAKSMGLYG 276 (435)
Q Consensus 198 ~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~s~SK~~g~~G 276 (435)
++++++|+||||.+++.+++++|+++|++||+++|+||+|.++.+++. ...++..+.. ..++++++.|+||.+|++|
T Consensus 166 ~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G 243 (388)
T 1j32_A 166 LLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDA--QHLSIGAASPEAYERSVVCSGFAKTYAMTG 243 (388)
T ss_dssp EEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC--CCCCGGGSCHHHHHTEEEEEESTTTTTCTT
T ss_pred EEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCC--CCCCHHHccccccCCEEEEeechhccCCcc
Confidence 999999999999999999999999999999999999999999887541 1112222211 1357899999999999999
Q ss_pred CcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013839 277 HRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKL 356 (435)
Q Consensus 277 ~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 356 (435)
+|+||+++ +++ +++.+.........+++.+.|.++..+|.... +++++.+++++++++.+.+.|+++
T Consensus 244 ~r~G~~~~---~~~----~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~------~~~~~~~~~~~~~~~~l~~~L~~~ 310 (388)
T 1j32_A 244 WRVGFLAG---PVP----LVKAATKIQGHSTSNVCTFAQYGAIAAYENSQ------DCVQEMLAAFAERRRYMLDALNAM 310 (388)
T ss_dssp TCCEEEEC---CHH----HHHHHHHHHHTTTCSCCHHHHHHHHHHHHSCS------HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cceEEEEe---CHH----HHHHHHHHHhhcccCCCHHHHHHHHHHHhCCc------HHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999964 777 77777776666667888999998888886433 567788899999999999999887
Q ss_pred CCCCCccccccCcceeEecCC-----CHHHH-HHHhhhccEEEeCC------C--cEEeccCCCCcHHHHHHHHHHHHHh
Q 013839 357 GSSLNWEHITNQLGMFCFSGL-----TPYQV-DRLAKEFHIYMTQD------G--RISMAGVTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 357 ~~~~~~~~~~~~~g~~~~~~~-----~~~~~-~~ll~~~gI~i~pg------g--Ris~~~~~~e~i~~~~~~l~~~l~~ 422 (435)
+ ++.+..+++++|+|+.+ +.+.+ ..+++++||.+.|| + |++++. +++++++++++|++++++
T Consensus 311 ~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~-~~~~i~~~~~~l~~~l~~ 386 (388)
T 1j32_A 311 P---GLECPKPDGAFYMFPSIAKTGRSSLDFCSELLDQHQVATVPGAAFGADDCIRLSYAT-DLDTIKRGMERLEKFLHG 386 (388)
T ss_dssp T---TCBCCCCCBTTEECCBCGGGTCCHHHHHHHHHHHHCEECEEGGGGTCTTBEEEECCS-CHHHHHHHHHHHHHHHHH
T ss_pred C---CCcccCCCeeEEEEEecCCCCCCHHHHHHHHHHhCCEEEeChhhhCCCCcEEEEecC-CHHHHHHHHHHHHHHHHH
Confidence 3 25667788899998854 44444 56655589999986 2 999975 889999999999998865
Q ss_pred h
Q 013839 423 E 423 (435)
Q Consensus 423 ~ 423 (435)
+
T Consensus 387 ~ 387 (388)
T 1j32_A 387 I 387 (388)
T ss_dssp H
T ss_pred h
Confidence 3
No 28
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}
Probab=100.00 E-value=8e-43 Score=341.90 Aligned_cols=342 Identities=15% Similarity=0.109 Sum_probs=267.9
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccC-CCeeeEecCCc
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKE-GRSAGVQALSG 126 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~-~~v~~~~t~gg 126 (435)
++.+.|+|+.|.+ +. ..++.+.+.+.+.+.......|++..|.+++|+++++++....+.+.++ ++|. +++|+
T Consensus 45 ~g~~~idl~~g~~-~~---~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~--~t~G~ 118 (404)
T 2o1b_A 45 GPLPLINMAVGIP-DG---PTPQGIIDHFQKALTIPENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVC--ILYGT 118 (404)
T ss_dssp CSSCCEECCCCSC-SS---CCCHHHHHHHHHHTTCHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEE--EESSH
T ss_pred CCCCEEecCCcCC-CC---CCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCcccEE--EcCCc
Confidence 4567999999996 32 2333333333333332223469888899999999999983211111224 6888 99999
Q ss_pred hhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCC
Q 013839 127 TGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHN 206 (435)
Q Consensus 127 ~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~N 206 (435)
++|+.++ +..++.+||+|+++.|+|.++...++..|++++.++.. ++++.+|+++|++++. ++++++++++|+|
T Consensus 119 ~~al~~~--~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~-~~~~~~d~~~l~~~l~---~~~~~v~l~~p~n 192 (404)
T 2o1b_A 119 KNGLVAV--PTCVINPGDYVLLPDPGYTDYLAGVLLADGKPVPLNLE-PPHYLPDWSKVDSQII---DKTKLIYLTYPNN 192 (404)
T ss_dssp HHHHHHH--HHHHCCTTCEEEEEESCCSSHHHHHHHTTCEEEEEECC-TTTCCCCGGGSCHHHH---HHEEEEEECSSCT
T ss_pred HHHHHHH--HHHhcCCCCEEEEcCCCchhHHHHHHHCCCEEEEeccC-cccCcCCHHHHHHhhc---cCceEEEEcCCCC
Confidence 9999998 66678899999999999999999999999999999883 4556789999999987 5689999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEe
Q 013839 207 PTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILC 286 (435)
Q Consensus 207 PtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~ 286 (435)
|||.+++.+++++|+++|++||+++|+||+|..+.+++. ..++..+.+..+++++++|+||.+|++|+|+||+++
T Consensus 193 ptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~---~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~-- 267 (404)
T 2o1b_A 193 PTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAK---NPSILASENGKDVAIEIYSLSKGYNMSGFRVGFAVG-- 267 (404)
T ss_dssp TTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSC---CCCGGGSTTHHHHEEEEEESTTTTTCGGGCCEEEEE--
T ss_pred CCCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCC---CCChhhcCCCCCCEEEEEecchhccCchhheEeEec--
Confidence 999999999999999999999999999999999887531 112222222235789999999999999999999964
Q ss_pred cChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccc
Q 013839 287 VDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHIT 366 (435)
Q Consensus 287 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 366 (435)
+++ +++.+.........+++.+.|.++..+|... .+++++.+++++++++.+.+.|++++ +.+..
T Consensus 268 -~~~----~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~------~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~ 332 (404)
T 2o1b_A 268 -NKD----MIQALKKYQTHTNAGMFGALQDAAIYALNHY------DDFLEEQSNVFKTRRDRFEAMLAKAD----LPFVH 332 (404)
T ss_dssp -CHH----HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC------HHHHHHHHHHHHHHHHHHHHHHHHTT----CCEEC
T ss_pred -CHH----HHHHHHHHHhhccCCCCHHHHHHHHHHHhcC------HHHHHHHHHHHHHHHHHHHHHHHhcC----CeecC
Confidence 888 7777777665556788999999998888653 26678889999999999999999875 45667
Q ss_pred cCcceeEecCC----CH-HHHHHHhhhccEEEeCC--------C--cEEeccCCCCcHHHHHHHHHHHHHh
Q 013839 367 NQLGMFCFSGL----TP-YQVDRLAKEFHIYMTQD--------G--RISMAGVTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 367 ~~~g~~~~~~~----~~-~~~~~ll~~~gI~i~pg--------g--Ris~~~~~~e~i~~~~~~l~~~l~~ 422 (435)
+++|+|+|+.+ +. ++++.+++++||.+.|| + ||+++. +++++++++++|++++++
T Consensus 333 ~~~g~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRis~~~-~~e~l~~~l~~l~~~l~~ 402 (404)
T 2o1b_A 333 AKGGIYVWLETPPGYDSEQFEQFLVQEKSILVAPGKPFGENGNRYVRISLAL-DDQKLDEAAIRLTELAYL 402 (404)
T ss_dssp CCBSSEEEEECCTTCCHHHHHHHHHHHHCEECEESGGGCGGGTTEEEEECCS-CTTHHHHHHHHHHGGGGG
T ss_pred CCcceEEEEeCCCCCCHHHHHHHHHHHCCEEEeCchhhCcCCCCeEEEEEcC-CHHHHHHHHHHHHHHHHh
Confidence 88899999755 33 34566666789999985 2 999987 889999999999887754
No 29
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=100.00 E-value=2.6e-42 Score=340.51 Aligned_cols=367 Identities=13% Similarity=0.136 Sum_probs=274.0
Q ss_pred cCCCCCCchhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHH----------HHhcCCCCCCCCCCcccHHHH
Q 013839 29 VAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAE----------AKIAGSEFLESISASVSTKMV 98 (435)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~Y~~~~g~~~lr 98 (435)
+...+++.+.++.+...+ ..+++|+|+.|.| +.. .+|...+.... ... ....+|.+..|.++||
T Consensus 11 ~~~~~~~~~~~~~~~~~~-~~~~~i~l~~G~p-~~~--~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~Y~~~~G~~~lr 84 (425)
T 2r2n_A 11 SAARNPSPIRTMTDILSR-GPKSMISLAGGLP-NPN--MFPFKTAVITVENGKTIQFGEEMM--KRALQYSPSAGIPELL 84 (425)
T ss_dssp HHTCCCCSGGGHHHHHHH-SCTTCEECCCCCC-CGG--GCSEEEEEEEETTSCCEEECHHHH--HHHTSCCCTTCCHHHH
T ss_pred HhcCCCchHHHHHHHhhc-CCCCeEEcCCcCC-Cch--hCCHHHHHHHHhhcccccccccch--hhhcCCCCCCCCHHHH
Confidence 334455556555555543 2367999999998 432 22211110000 000 0124699999999999
Q ss_pred HHHHHhHc---CCCCcccc----CCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeee
Q 013839 99 EESVKLVY---GKDSDVVK----EGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYH 171 (435)
Q Consensus 99 ~~ia~~l~---~~~~~~~~----~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~ 171 (435)
+++++++. +....+.+ +++|+ +|+|+++|+.++ +..++.+||+|++++|+|.++...++..|++++.++
T Consensus 85 ~~ia~~l~~~~g~~~~~~~~~~~~~~i~--~t~G~~~al~~~--~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~ 160 (425)
T 2r2n_A 85 SWLKQLQIKLHNPPTIHYPPSQGQMDLC--VTSGSQQGLCKV--FEMIINPGDNVLLDEPAYSGTLQSLHPLGCNIINVA 160 (425)
T ss_dssp HHHHHHHHHHHCCTTTTSCGGGTCEEEE--EESSHHHHHHHH--HHHHCCTTCEEEEESSCCHHHHHHHGGGTCEEEEEC
T ss_pred HHHHHHHHHhcCCCCccccccCCcCcEE--EeCcHHHHHHHH--HHHhCCCCCEEEEeCCCcHHHHHHHHHcCCEEEEeC
Confidence 99999983 33221000 25787 999999999998 677788999999999999999999999999999998
Q ss_pred ecCCCCCCcChHhHHHHhhcCC---------CCcEEEE-eCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCcc
Q 013839 172 YYDPDSKSLDFAALMDDIKNAP---------DSSFFLL-HPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFA 241 (435)
Q Consensus 172 ~~~~~~~~~d~e~l~~~i~~~~---------~~~~~v~-~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~ 241 (435)
+. ++ ++|+++|++.+++.+ +++++++ +++||||||.+++.+++++|+++|++||+++|+||+|.++.
T Consensus 161 ~~-~~--~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~li~De~~~~~~ 237 (425)
T 2r2n_A 161 SD-ES--GIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDDPYYFLQ 237 (425)
T ss_dssp EE-TT--EECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGB
T ss_pred cC-CC--CCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCccccc
Confidence 83 33 699999999987321 3456664 58999999999999999999999999999999999999888
Q ss_pred CCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHH
Q 013839 242 SGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATI 321 (435)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~ 321 (435)
+++. ...++..+ +..+++++++|+||.++ +|+|+||+++ +++ +++.+.........+++.++|.++..+
T Consensus 238 ~~g~--~~~~~~~~-~~~~~~i~~~s~SK~~~-~GlRiG~~~~---~~~----l~~~l~~~~~~~~~~~~~~~q~a~~~~ 306 (425)
T 2r2n_A 238 FNKF--RVPTFLSM-DVDGRVIRADSFSKIIS-SGLRIGFLTG---PKP----LIERVILHIQVSTLHPSTFNQLMISQL 306 (425)
T ss_dssp SSSS--CCCCTGGG-CTTSCEEEEEESTTTTC-STTCCEEEEE---EHH----HHHHHHHHHHTTTCSSCHHHHHHHHHH
T ss_pred CCCC--CCCCcccc-CCCCCEEEEccchhhcc-CccceEEEec---CHH----HHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 7542 12233333 33468999999999999 9999999974 777 888888776666678899999999998
Q ss_pred hCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCCccccccCcceeEecCC-----CHHHHHHHhhhccEEEeC
Q 013839 322 LSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKL-GSSLNWEHITNQLGMFCFSGL-----TPYQVDRLAKEFHIYMTQ 395 (435)
Q Consensus 322 l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~g~~~~~~~-----~~~~~~~ll~~~gI~i~p 395 (435)
|.... .+.+.+++++.+++++++++.+.+.|++. +. ...+..+++|+|+|+.+ +.+++.+.+.++||.+.|
T Consensus 307 l~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~--~~~~~~p~~g~~~~~~~~~~~~~~~~~~~~l~~~gv~v~p 383 (425)
T 2r2n_A 307 LHEWG-EEGFMAHVDRVIDFYSNQKDAILAAADKWLTG--LAEWHVPAAGMFLWIKVKGINDVKELIEEKAVKMGVLMLP 383 (425)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSS--SEEECCCSBSSEEEEEETTCSCCHHHHHTHHHHTTEECEE
T ss_pred HHhcc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CeEEeCCCceEEEEEEeCCCCCHHHHHHHHHHHCCcEEec
Confidence 86521 12355778899999999999999999875 21 12455678999999854 234455556789999987
Q ss_pred C-----------C--cEEeccCCCCcHHHHHHHHHHHHHh
Q 013839 396 D-----------G--RISMAGVTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 396 g-----------g--Ris~~~~~~e~i~~~~~~l~~~l~~ 422 (435)
| + ||+++..+++++++++++|++++++
T Consensus 384 g~~f~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~ 423 (425)
T 2r2n_A 384 GNAFYVDSSAPSPYLRASFSSASPEQMDVAFQVLAQLIKE 423 (425)
T ss_dssp GGGGSSSTTSCCCEEEEECSSCCHHHHHHHHHHHHHHHHH
T ss_pred hhhhcCCCCCCCCEEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 4 2 9999745899999999999998864
No 30
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}
Probab=100.00 E-value=3.4e-42 Score=340.24 Aligned_cols=352 Identities=14% Similarity=0.181 Sum_probs=272.7
Q ss_pred CCCeeeeecceecCCCCCcccchH--HHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCC---eeeEec
Q 013839 49 SPYKINLGVGAYRDDKGRPVVLQC--VREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGR---SAGVQA 123 (435)
Q Consensus 49 ~~~~i~l~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~---v~~~~t 123 (435)
.++.|||+.|.|. .. ..++.. ++++.+++.......|++..|.+++|+++++++...+ ....+++ +. +|
T Consensus 46 ~~~~i~l~~g~~~-~~--~~~~~~~~~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~-~~~~~~~~~~i~--~t 119 (430)
T 2x5f_A 46 KSTTYNATIGMAT-NK--DGKMFASSLDAMFNDLTPDEIFPYAPPQGIEELRDLWQQKMLRDN-PELSIDNMSRPI--VT 119 (430)
T ss_dssp TTCSEECCCSSCE-ET--TEECCCHHHHTTBSSCCGGGTSSCCCTTCCHHHHHHHHHHHHHHC-TTCCGGGBCCCE--EE
T ss_pred CCCcEEeeeeecc-CC--CCchhhHHHHHHHHhcCcccccccCCCCCCHHHHHHHHHHHhccC-cccCCCccceEE--Ec
Confidence 3578999999852 11 222322 3433333322135679998899999999999984322 2233567 88 89
Q ss_pred CCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhh-CCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeC
Q 013839 124 LSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRD-AQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHP 202 (435)
Q Consensus 124 ~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~-~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~ 202 (435)
+|+++|+.++ +..++.+||+|++++|+|.++...++. .|++++.++.. ++++++|+++|++++++.+.++++++++
T Consensus 120 ~g~~~al~~~--~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~~~~~-~~~~~~d~~~l~~~l~~~~~~~~~v~i~ 196 (430)
T 2x5f_A 120 NALTHGLSLV--GDLFVNQDDTILLPEHNWGNYKLVFNTRNGANLQTYPIF-DKDGHYTTDSLVEALQSYNKDKVIMILN 196 (430)
T ss_dssp SHHHHHHHHH--HHHHCCTTCEEEEESSCCTHHHHHHTTTTCCEEEEECCB-CTTSCBCSHHHHHHHHHCCSSEEEEEEC
T ss_pred CCchHHHHHH--HHHHhCCCCEEEEcCCcCccHHHHHHHhcCCeEEEEecc-CccCCcCHHHHHHHHHhcCCCCEEEEEc
Confidence 9999999998 666788999999999999999999999 99999999884 3237899999999998543478999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHh-----cCceeeeeccCCCccCCCCcccHHHHH-HhhhcCCe---EEEEeccccccc
Q 013839 203 SAHNPTGVDPTEEQWREISYQFKV-----KGHFPFFDMAYQGFASGDLDKDAQAIR-IFLEDEHL---IGCAQSYAKSMG 273 (435)
Q Consensus 203 ~p~NPtG~~~~~~~l~~i~~~~~~-----~~~~vi~Deay~~~~~~~~~~~~~~~~-~~~~~~~~---~i~~~s~SK~~g 273 (435)
+||||||.+++.+++++|+++|++ ||+++|+||+|.++.+++. ...++. .+.+..++ +++++|+||.+|
T Consensus 197 ~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~ 274 (430)
T 2x5f_A 197 YPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDV--YTQSLFTALTNLHSNAILPIRLDGATKEFF 274 (430)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSS--CCSCHHHHHHTTCCTTEEEEEEEEHHHHTT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcc--cchHHHHHHhhccCCcceEEEEEecccCCC
Confidence 999999999999999999999999 9999999999999987642 112332 33333567 999999999999
Q ss_pred ccCCcccEEEEEecChhHHHHHHHHHHHHhhc----cccCCChhHHHHHHHHhC-ChhhHHHHHHHHHHHHHHHHHHHHH
Q 013839 274 LYGHRVGCLSILCVDSKQAAAIRSQIQQIARA----MYGSPPVHGILLVATILS-DPNLKSLWIDEVKIMADRIQRKRTT 348 (435)
Q Consensus 274 ~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~q~~~~~~l~-~~~l~~~~~~~~~~~~~~~~~~~~~ 348 (435)
++|+|+||+++.+.+++ +++.+...... .+.+++.++|.++..+|. +.. |.+++++.+++++++++.
T Consensus 275 ~~G~riG~~~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~----~~~~~~~~~~~~~~~~~~ 346 (430)
T 2x5f_A 275 AWGFRVGFMTFGTSDQT----TKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNKQ----FDKEIEQNIQTLKERYEV 346 (430)
T ss_dssp CGGGCCEEEEEBCCCHH----HHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSCHH----HHHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEecCCHH----HHHHHHHHHhhhhhcccCCCChHHHHHHHHHHccChH----HHHHHHHHHHHHHHHHHH
Confidence 99999999962113666 66666655444 567899999999999998 753 445667799999999999
Q ss_pred HHHHHH----hhCCCCCccccccCcceeEecCC---CHH-HHHHHhhhccEEEeCCC----cEEeccCCCCcHHHHHHHH
Q 013839 349 LRQNLE----KLGSSLNWEHITNQLGMFCFSGL---TPY-QVDRLAKEFHIYMTQDG----RISMAGVTTGNVNYLANAI 416 (435)
Q Consensus 349 l~~~l~----~~~~~~~~~~~~~~~g~~~~~~~---~~~-~~~~ll~~~gI~i~pgg----Ris~~~~~~e~i~~~~~~l 416 (435)
+.+.|+ +.+ +.+..+++|+|+|+.+ +.+ +...+++++||.+.||+ ||+++..+++++++++++|
T Consensus 347 l~~~L~~~~~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~iRis~~~~~~e~i~~~~~~l 422 (430)
T 2x5f_A 347 TKEVVYADQYHSH----WQAYDFNSGYFMAIKVHDVDPEALRKHLIDKYSIGVIALNATDIRIAFSCVEKDDIPHVFDSI 422 (430)
T ss_dssp HHHHHTCGGGTTT----EEECCCCBSSEEEEEESSSCHHHHHHHHHHHHCEECEECSSSEEEEEGGGSCGGGHHHHHHHH
T ss_pred HHHHHHhhCCCCC----ceeeCCCceEEEEeCCCCCCHHHHHHHHHHhCCEEEecCCCCeEEEEEecCCHHHHHHHHHHH
Confidence 999998 443 5677788999998854 444 44666554899999973 9999844889999999999
Q ss_pred HHHHHhh
Q 013839 417 HEVTRSE 423 (435)
Q Consensus 417 ~~~l~~~ 423 (435)
+++++++
T Consensus 423 ~~~l~~~ 429 (430)
T 2x5f_A 423 AKAIDDL 429 (430)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9998754
No 31
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=100.00 E-value=5.5e-42 Score=335.22 Aligned_cols=340 Identities=14% Similarity=0.156 Sum_probs=263.5
Q ss_pred CCCeeeeecceecCCCCCcccchHHHHHHHHhcCCC---CCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCC
Q 013839 49 SPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSE---FLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALS 125 (435)
Q Consensus 49 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~g 125 (435)
++++|+|+.|.| +. +.++.+.+.+.+.+.... ...|++..|.+++|+++++++....+.+.++++|. +|+|
T Consensus 34 ~~~~i~l~~~~~-~~---~~~~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~--~~~g 107 (398)
T 3ele_A 34 KENVYDFSIGNP-SI---PAPQIVNDTIKELVTDYDSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLY--MTMG 107 (398)
T ss_dssp GGGCEECCSCCC-CS---CCCHHHHHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEE--EESS
T ss_pred CCCeEEeecCCC-CC---CCCHHHHHHHHHHHhcCCccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEE--EccC
Confidence 468999999985 33 333333333333333211 45698999999999999999842222223477888 9999
Q ss_pred chhHHHHHHHHHHHhCCC-CEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCC
Q 013839 126 GTGACRLFAEFQRRFHPE-SHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSA 204 (435)
Q Consensus 126 g~~a~~~~~~~~~~~~~g-d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p 204 (435)
+++|+.++ +..++.+| |+|++++|+|.++...++..|++++.+|. +++++++|+++|++++. ++++++++++|
T Consensus 108 ~~~al~~~--~~~l~~~g~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~-~~~~~~~d~~~l~~~l~---~~~~~v~~~~p 181 (398)
T 3ele_A 108 AAASLSIC--FRALTSDAYDEFITIAPYFPEYKVFVNAAGARLVEVPA-DTEHFQIDFDALEERIN---AHTRGVIINSP 181 (398)
T ss_dssp HHHHHHHH--HHHHCCSTTCEEEEESSCCTHHHHHHHHTTCEEEEECC-CTTTSSCCHHHHHHTCC---TTEEEEEECSS
T ss_pred HHHHHHHH--HHHHcCCCCCEEEEeCCCchhhHHHHHHcCCEEEEEec-CCcCCcCCHHHHHHHhC---cCCCEEEEcCC
Confidence 99999998 67778999 99999999999999999999999999998 45578999999999997 67899999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHh------cCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCc
Q 013839 205 HNPTGVDPTEEQWREISYQFKV------KGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHR 278 (435)
Q Consensus 205 ~NPtG~~~~~~~l~~i~~~~~~------~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~R 278 (435)
|||||.+++.+++++|+++|++ ||+++|+||+|.++.+++.. .+ ...+..+++++++|+||.+|++|+|
T Consensus 182 ~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~--~~---~~~~~~~~~i~~~s~sK~~~~~G~r 256 (398)
T 3ele_A 182 NNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIK--VP---FVTKYYDNTLVCYSYSKSLSLPGER 256 (398)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCC--CC---CGGGTCSSEEEEEESTTTSSCTTTC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCC--cC---ChHhhcCCeEEEEehhhcCCCccce
Confidence 9999999999999999999999 99999999999999876411 11 1223457899999999999999999
Q ss_pred ccEEEEEecChhHHH--HHHHHHHHHhhc-cccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013839 279 VGCLSILCVDSKQAA--AIRSQIQQIARA-MYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEK 355 (435)
Q Consensus 279 vG~~~~~~~~~~~~~--~~~~~l~~~~~~-~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 355 (435)
+||+++ +++..+ .+...+...... .+.+++.+.|.++..++.+.. .+++++++++.+.+.|++
T Consensus 257 ~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-----------~~~~~~~~~~~l~~~L~~ 322 (398)
T 3ele_A 257 IGYVLV---PDEVYDKAELYAAVCGAGRALGYVCAPSLFQKMIVKCQGATG-----------DINAYKENRDLLYEGLTR 322 (398)
T ss_dssp CEEEEC---CTTSTTHHHHHHHHHHHHHHTTCCCSCHHHHHHHTTCTTCCC-----------CHHHHHHHHHHHHHHHHH
T ss_pred eEEEEE---cchhhhHHHHHHHHHHHhhhccccCCCHHHHHHHHHHhcCHH-----------HHHHHHHHHHHHHHHHHH
Confidence 999964 544211 234444443332 356778888888888877542 356778888899999988
Q ss_pred hCCCCCccccccCcceeEecCC---CHHHHHHHhhhccEEEeCCC--------cEEeccCCCCcHHHHHHHHHHHHHhhh
Q 013839 356 LGSSLNWEHITNQLGMFCFSGL---TPYQVDRLAKEFHIYMTQDG--------RISMAGVTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 356 ~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~ll~~~gI~i~pgg--------Ris~~~~~~e~i~~~~~~l~~~l~~~~ 424 (435)
++ +.+..+++++|+|+.+ +.+.+.+.++++||.+.||. ||+++. +++++++++++|++++++..
T Consensus 323 ~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~~-~~e~i~~~l~~l~~~l~~~~ 397 (398)
T 3ele_A 323 IG----YHCFKPDGAFYMFVKALEDDSNAFCEKAKEEDVLIVAADGFGCPGWVRISYCV-DREMIKHSMPAFEKIYKKYN 397 (398)
T ss_dssp HT----CCEECCSBSSEEEEECSSSCHHHHHHHHHTTTEECEESGGGTCTTEEEEECCS-CHHHHHHHHHHHHHHHHHHC
T ss_pred cC----CeecCCCeeEEEEEEcCCCCHHHHHHHHHHCCEEEeCccccCCCCeEEEEecC-CHHHHHHHHHHHHHHHHHhh
Confidence 86 4577889999999865 45555445577999999872 999974 89999999999999987653
No 32
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1
Probab=100.00 E-value=1.8e-41 Score=330.72 Aligned_cols=338 Identities=16% Similarity=0.151 Sum_probs=266.8
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCch
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~ 127 (435)
.+++.|+|+.|.+ +. +.++.+.+.+...+... ...|++..|.+++|+++++++....+.+++++++. +++||+
T Consensus 39 ~g~~~i~l~~~~~-~~---~~~~~v~~a~~~~~~~~-~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~v~--~~~g~t 111 (389)
T 1o4s_A 39 KGEDVINLTAGEP-DF---PTPEPVVEEAVRFLQKG-EVKYTDPRGIYELREGIAKRIGERYKKDISPDQVV--VTNGAK 111 (389)
T ss_dssp TTCCCEECCCSSC-SS---CCCHHHHHHHHHHHTTC-CCCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEE--EESHHH
T ss_pred cCCCEEEccCCCC-CC---CCCHHHHHHHHHHHhcC-CCCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEE--EecCHH
Confidence 4578999999996 32 33334444444444333 45698888999999999999842211122367888 999999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCC
Q 013839 128 GACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNP 207 (435)
Q Consensus 128 ~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NP 207 (435)
+|+.++ +..++.+||+|++++|+|..+...++..|++++.++..+++++.+|+++|+++++ ++++++++++|+||
T Consensus 112 ~al~~~--~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~---~~~~~v~~~~p~np 186 (389)
T 1o4s_A 112 QALFNA--FMALLDPGDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLV---GKTKAVLINSPNNP 186 (389)
T ss_dssp HHHHHH--HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCC---TTEEEEEEESSCTT
T ss_pred HHHHHH--HHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhcc---cCceEEEEcCCCCC
Confidence 999998 6666889999999999999999999999999999988432467899999999987 57889999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEec
Q 013839 208 TGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCV 287 (435)
Q Consensus 208 tG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~ 287 (435)
||.+++.+++++|+++|++||+++|+||+|..+.+++. ..++..+....+++++++|+||.+|++|+|+||+++
T Consensus 187 tG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~---~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~l~~--- 260 (389)
T 1o4s_A 187 TGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDE---FTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLIS--- 260 (389)
T ss_dssp TCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSC---CCCHHHHCSSSTTEEEEEESTTTTTCGGGCCEEEEC---
T ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCC---CCCHhhcCCCCCcEEEEeechhhcCCcccceEEEEe---
Confidence 99999999999999999999999999999999887531 112333322356799999999999999999999964
Q ss_pred ChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccc
Q 013839 288 DSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITN 367 (435)
Q Consensus 288 ~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 367 (435)
+++ +++.+.........+++.+.|.++..+|... .++.+++++++++.+.+.|++++ +.+..+
T Consensus 261 ~~~----~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~---------~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~ 323 (389)
T 1o4s_A 261 SEK----VATAVSKIQSHTTSCINTVAQYAALKALEVD---------NSYMVQTFKERKNFVVERLKKMG----VKFVEP 323 (389)
T ss_dssp CHH----HHHHHHHHHHHHTCSCCHHHHHHHHHHTTCC---------CHHHHHHHHHHHHHHHHHHHHTT----CCCCCC
T ss_pred CHH----HHHHHHHHhhhcccCCCHHHHHHHHHHHhcc---------HHHHHHHHHHHHHHHHHHHHhcC----CeeecC
Confidence 777 7777777665556678889999988888753 35667788889999999998875 456667
Q ss_pred CcceeEecCC--CHHH-HHHHhhhccEEEeCC------C--cEEeccCCCCcHHHHHHHHHHHHH
Q 013839 368 QLGMFCFSGL--TPYQ-VDRLAKEFHIYMTQD------G--RISMAGVTTGNVNYLANAIHEVTR 421 (435)
Q Consensus 368 ~~g~~~~~~~--~~~~-~~~ll~~~gI~i~pg------g--Ris~~~~~~e~i~~~~~~l~~~l~ 421 (435)
++|+|+|+.+ +.+. .+.+++++||.+.|| + |++++. +++++++++++|+++++
T Consensus 324 ~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~Ris~~~-~~~~l~~~l~~l~~~l~ 387 (389)
T 1o4s_A 324 EGAFYLFFKVRGDDVKFCERLLEEKKVALVPGSAFLKPGFVRLSFAT-SIERLTEALDRIEDFLN 387 (389)
T ss_dssp SBSSEEEEECSSCHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCS-CHHHHHHHHHHHHHHHT
T ss_pred CcceEEEEeCCCCHHHHHHHHHHHCCEEEeCchhcCCCCeEEEEEeC-CHHHHHHHHHHHHHHHh
Confidence 8899999866 4444 466655789999886 2 999986 88999999999998774
No 33
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Probab=100.00 E-value=5e-42 Score=337.06 Aligned_cols=362 Identities=14% Similarity=0.081 Sum_probs=273.5
Q ss_pred cccCCCCCCchhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHc
Q 013839 27 DHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVY 106 (435)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~ 106 (435)
+++...+++.+ ..+.++.. .++.|+|+.|.+ +. +.++.+.+.+.+.+..+ ...|++..|.+++++++++++.
T Consensus 5 ~~~~~~~~~~~-~~~~~~~~--~~~~i~l~~~~~-~~---~~~~~v~~a~~~~~~~~-~~~y~~~~g~~~l~~~la~~~~ 76 (411)
T 2o0r_A 5 SRLRPYATTVF-AEMSALAT--RIGAVNLGQGFP-DE---DGPPKMLQAAQDAIAGG-VNQYPPGPGSAPLRRAIAAQRR 76 (411)
T ss_dssp GGGGGGSSCHH-HHHHHHHH--TTTCEESSCSSC-SS---CCCHHHHHHHHHHHHTT-CCSCCCTTCCHHHHHHHHHHHH
T ss_pred hHhHhcCccHH-HHHHHHhh--cCCeeeccCcCC-CC---CCCHHHHHHHHHHHhcC-CCCCCCCCCCHHHHHHHHHHHH
Confidence 34444444433 44444432 356899999985 32 23333444444444333 4569988999999999999983
Q ss_pred CCCCccccCC-CeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCC-CCCCcChHh
Q 013839 107 GKDSDVVKEG-RSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDP-DSKSLDFAA 184 (435)
Q Consensus 107 ~~~~~~~~~~-~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~-~~~~~d~e~ 184 (435)
...+.+..++ ++. +++||++|+.++ +..++.+||+|++++|+|.++...++..|++++.++..++ +++.+|+++
T Consensus 77 ~~~g~~~~~~~~v~--~t~g~~~al~~~--~~~~~~~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~ 152 (411)
T 2o0r_A 77 RHFGVDYDPETEVL--VTVGATEAIAAA--VLGLVEPGSEVLLIEPFYDSYSPVVAMAGAHRVTVPLVPDGRGFALDADA 152 (411)
T ss_dssp HHHCCCCCTTTSEE--EEEHHHHHHHHH--HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHH
T ss_pred HHcCCCCCCCceEE--EeCCHHHHHHHH--HHHhcCCCCEEEEeCCCcHhHHHHHHHcCCEEEEeeccccccCCCCCHHH
Confidence 2111122356 888 999999999998 6666889999999999999999999999999999987422 246799999
Q ss_pred HHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEE
Q 013839 185 LMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGC 264 (435)
Q Consensus 185 l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~ 264 (435)
|+++++ ++++++++++|+||||.+++.+++++|+++|++||+++|+||+|.++.+++. ...++..+....+++++
T Consensus 153 l~~~l~---~~~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~~~~~~i~ 227 (411)
T 2o0r_A 153 LRRAVT---PRTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHA--RHLPLAGFDGMAERTIT 227 (411)
T ss_dssp HHHHCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTC--CCCCGGGSTTTGGGEEE
T ss_pred HHHhhc---cCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCC--CCcChhhccCCCCCEEE
Confidence 999997 5789999999999999999999999999999999999999999999887531 11233333222467999
Q ss_pred EecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHH
Q 013839 265 AQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQR 344 (435)
Q Consensus 265 ~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~ 344 (435)
+.|+||.+|++|+|+||+++ +++ +++.+.........+.+.+.|.++..+|... .+++++.++++++
T Consensus 228 ~~s~sK~~~~~G~r~G~~~~---~~~----~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~------~~~~~~~~~~~~~ 294 (411)
T 2o0r_A 228 ISSAAKMFNCTGWKIGWACG---PAE----LIAGVRAAKQYLSYVGGAPFQPAVALALDTE------DAWVAALRNSLRA 294 (411)
T ss_dssp EEEHHHHTTCTTTCEEEEEC---CHH----HHHHHHHHHHHHTSCCCTTHHHHHHHHHHHC------HHHHHHHHHHHHH
T ss_pred EeechhhcCCccceEEEEee---CHH----HHHHHHHHHhhccCCCChHHHHHHHHHHhCC------hHHHHHHHHHHHH
Confidence 99999999999999999964 787 7777776555445667788888888888532 2567888899999
Q ss_pred HHHHHHHHHHhhCCCCCccccccCcceeEecCC------CHH-HHHHHhhhccEEEeCC-----------------C---
Q 013839 345 KRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL------TPY-QVDRLAKEFHIYMTQD-----------------G--- 397 (435)
Q Consensus 345 ~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~------~~~-~~~~ll~~~gI~i~pg-----------------g--- 397 (435)
+++.+.+.|++++ +.+..+++|+|+|+.+ +.. +...+++++||.+.|| +
T Consensus 295 ~~~~l~~~L~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~ 370 (411)
T 2o0r_A 295 RRDRLAAGLTEIG----FAVHDSYGTYFLCADPRPLGYDDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHL 370 (411)
T ss_dssp HHHHHHHHHHHHT----CEECCCCBSSEEEEECGGGTCCCHHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGC
T ss_pred HHHHHHHHHHHcC----CEecCCCeeEEEEEecCCCCCCCHHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCe
Confidence 9999999998886 4566788898998754 233 4466666789999752 2
Q ss_pred -cEEeccCCCCcHHHHHHHHHHHHHhh
Q 013839 398 -RISMAGVTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 398 -Ris~~~~~~e~i~~~~~~l~~~l~~~ 423 (435)
||+++. +++++++++++|++++++.
T Consensus 371 iRis~~~-~~e~i~~~~~~l~~~~~~~ 396 (411)
T 2o0r_A 371 VRFTFCK-RDDTLDEAIRRLSVLAERP 396 (411)
T ss_dssp EEEECCS-CHHHHHHHHHHHGGGGC--
T ss_pred EEEEecC-CHHHHHHHHHHHHHHHhcc
Confidence 999976 8889999999998876543
No 34
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1
Probab=100.00 E-value=1.1e-41 Score=331.90 Aligned_cols=357 Identities=12% Similarity=0.085 Sum_probs=272.4
Q ss_pred ccccCCCCCCchhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhH
Q 013839 26 WDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLV 105 (435)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l 105 (435)
.+++...+.+ .+....++.. .++.|+|+.|.+ +. +.++.+.+.+.+.+..+ ...|++..|.+++|+++++++
T Consensus 9 ~~~~~~~~~~-~~~~~~~~~~--~~~~i~l~~~~~-~~---~~~~~v~~a~~~~~~~~-~~~y~~~~g~~~l~~~la~~l 80 (386)
T 1u08_A 9 QSKLPQLGTT-IFTQMSALAQ--QHQAINLSQGFP-DF---DGPRYLQERLAHHVAQG-ANQYAPMTGVQALREAIAQKT 80 (386)
T ss_dssp CCSCCCCCCC-HHHHHHHHHH--HTTCEECCCSSC-SS---CCCHHHHHHHHHHHHTT-CCSCCCTTCCHHHHHHHHHHH
T ss_pred chhhhcCCcc-HHHHHHHHHh--cCCeEEecCCCC-CC---CCCHHHHHHHHHHHHhh-ccCCCCCCCCHHHHHHHHHHH
Confidence 3445555544 3344444432 257899999986 33 23333433333444333 457988889999999999998
Q ss_pred cCCCCccccCC-CeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHh
Q 013839 106 YGKDSDVVKEG-RSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAA 184 (435)
Q Consensus 106 ~~~~~~~~~~~-~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~ 184 (435)
....+.+.+++ ++. +++|+++|+.++ +..++.+||+|++++|+|..+...++..|++++.++. +++++++|+++
T Consensus 81 ~~~~g~~~~~~~~v~--~~~g~~~a~~~~--~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~-~~~~~~~d~~~ 155 (386)
T 1u08_A 81 ERLYGYQPDADSDIT--VTAGATEALYAA--ITALVRNGDEVICFDPSYDSYAPAIALSGGIVKRMAL-QPPHFRVDWQE 155 (386)
T ss_dssp HHHHSCCCCTTTTEE--EESSHHHHHHHH--HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEEC-CTTTCCCCHHH
T ss_pred HHHhCCCCCCCCCEE--EcCChHHHHHHH--HHHhCCCCCEEEEeCCCchhHHHHHHHcCCEEEEeec-CcccCcCCHHH
Confidence 22111122366 888 999999999988 6666789999999999999999999999999999988 34467899999
Q ss_pred HHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEE
Q 013839 185 LMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGC 264 (435)
Q Consensus 185 l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~ 264 (435)
|++++. ++++++++++|+||||.+++.+++++|+++|++||+++|+||+|.++.+++. ...++..+....+++++
T Consensus 156 l~~~l~---~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~~~~~~i~ 230 (386)
T 1u08_A 156 FAALLS---ERTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQ--GHASVLAHPQLRERAVA 230 (386)
T ss_dssp HHHHCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSS--CCCCGGGSHHHHTTEEE
T ss_pred HHHhhc---ccCEEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEEccccccccCCC--CCcChhcccCccCcEEE
Confidence 999996 6789999999999999999999999999999999999999999999887542 11122222222467999
Q ss_pred EecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHH
Q 013839 265 AQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQR 344 (435)
Q Consensus 265 ~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~ 344 (435)
+.|+||.+|++|+|+||+++ +++ +++.+.........+.+.+.|.++..+|.... +++++.++++++
T Consensus 231 ~~s~sK~~~~~G~r~G~~~~---~~~----~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~------~~~~~~~~~~~~ 297 (386)
T 1u08_A 231 VSSFGKTYHMTGWKVGYCVA---PAP----ISAEIRKVHQYLTFSVNTPAQLALADMLRAEP------EHYLALPDFYRQ 297 (386)
T ss_dssp EEEHHHHTTCGGGCCEEEEC---CHH----HHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCT------HHHHTHHHHHHH
T ss_pred EecchhhcCCcccceEEEEc---CHH----HHHHHHHHHHhhccCCChHHHHHHHHHHhCCc------HHHHHHHHHHHH
Confidence 99999999999999999964 777 77777776555556788889988888886432 567888999999
Q ss_pred HHHHHHHHHHhhCCCCCccccccCcceeEecCC------CHHHH-HHHhhhccEEEeCC--------C----cEEeccCC
Q 013839 345 KRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL------TPYQV-DRLAKEFHIYMTQD--------G----RISMAGVT 405 (435)
Q Consensus 345 ~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~------~~~~~-~~ll~~~gI~i~pg--------g----Ris~~~~~ 405 (435)
+++.+.+.|++++ +.+..+++|+|+|+.+ +.+.+ ..+++++||.+.|| + ||+++. +
T Consensus 298 ~~~~l~~~L~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~iRis~~~-~ 372 (386)
T 1u08_A 298 KRDILVNALNESR----LEILPCEGTYFLLVDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAK-K 372 (386)
T ss_dssp HHHHHHHHTTSSS----CEECCCCBSSEEEEECTTTCCSCHHHHHHHHHHHSCEECEEGGGGCSSCCCSCEEEEECCS-C
T ss_pred HHHHHHHHHHHCC----CeecCCCceEEEEEecCCCCCCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCEEEEEEcC-C
Confidence 9999999998775 5566778889999854 34444 55666789999864 2 999976 8
Q ss_pred CCcHHHHHHHHHH
Q 013839 406 TGNVNYLANAIHE 418 (435)
Q Consensus 406 ~e~i~~~~~~l~~ 418 (435)
++++++++++|++
T Consensus 373 ~~~i~~~~~~l~~ 385 (386)
T 1u08_A 373 ESTLLAAAERLRQ 385 (386)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhh
Confidence 8899999998864
No 35
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=100.00 E-value=6.2e-42 Score=339.02 Aligned_cols=360 Identities=12% Similarity=0.061 Sum_probs=276.2
Q ss_pred hhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCC
Q 013839 37 INGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEG 116 (435)
Q Consensus 37 ~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~ 116 (435)
++.....+...+++++|+|+.|.+ +. +.++.+.+.+...+..+....|++..|.+++|+++++++....+.++.++
T Consensus 31 ~~~~~~~~~~~~g~~~i~l~~~~~-~~---~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~ 106 (437)
T 3g0t_A 31 LVALVTNLEKATGTKFCRMEMGVP-GL---PAPQIGIETEIQKLREGVASIYPNLDGLPELKQEASRFAKLFVNIDIPAR 106 (437)
T ss_dssp HHHHHHHHHHHHTCCCEECCCCSC-CS---CCCHHHHHHHHHHHHHTGGGSCCCTTCCHHHHHHHHHHHHHHHCCCCCGG
T ss_pred HHHHHHHHHHhcCCCEEeccCcCC-CC---CCCHHHHHHHHHHHhCCcCcCCCCCCChHHHHHHHHHHHHHhhCCCCCcc
Confidence 334444443335678999999995 32 33444444444444333236799999999999999999953222233467
Q ss_pred CeeeEecCCchhHHHHHHHHHHHh--CCCC--EEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcC
Q 013839 117 RSAGVQALSGTGACRLFAEFQRRF--HPES--HIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNA 192 (435)
Q Consensus 117 ~v~~~~t~gg~~a~~~~~~~~~~~--~~gd--~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~ 192 (435)
+++ +|+|+++|+.++ +..++ .+|| +|+++.|+|.++...++..|++++.+++. ++++.+|++.|++++.+
T Consensus 107 ~i~--~t~g~t~al~~~--~~~l~~~~~gd~~~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~-~~~~~~d~~~l~~~l~~- 180 (437)
T 3g0t_A 107 ACV--PTVGSMQGCFVS--FLVANRTHKNREYGTLFIDPGFNLNKLQCRILGQKFESFDLF-EYRGEKLREKLESYLQT- 180 (437)
T ss_dssp GEE--EESHHHHHHHHH--HHHHTTSCTTCSCCEEEEESCCHHHHHHHHHHTCCCEEEEGG-GGCTTHHHHHHHHHHTT-
T ss_pred cEE--EeCCHHHHHHHH--HHHHhcCCCCCccEEEEeCCCcHhHHHHHHHcCCEEEEEeec-CCCCccCHHHHHHHHhc-
Confidence 888 999999999998 66667 8999 99999999999999999999999999984 56678999999999932
Q ss_pred CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccH---HHH-HHhhhcCCeEEEEecc
Q 013839 193 PDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDA---QAI-RIFLEDEHLIGCAQSY 268 (435)
Q Consensus 193 ~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~---~~~-~~~~~~~~~~i~~~s~ 268 (435)
++++++++++||||||.+++.+++++|+++|++||+++|+|++|..+.+++. ... +++ ..+.+..+++++++|+
T Consensus 181 -~~~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~s~ 258 (437)
T 3g0t_A 181 -GQFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKD-YSHPGEPLYQPSVANYTDNYILALSS 258 (437)
T ss_dssp -TCCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSC-CCSTTSSCCCCCGGGTCSCEEEEEES
T ss_pred -CCceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCC-cCcccccchhhccCCCCCcEEEEEcC
Confidence 5678898999999999999999999999999999999999999998877521 111 001 2333346789999999
Q ss_pred cccccccCCcccEEEEEecChhHHHHHHH-H-----------------HHHHhhccccCCChhHHHHHHHHhCChhhHHH
Q 013839 269 AKSMGLYGHRVGCLSILCVDSKQAAAIRS-Q-----------------IQQIARAMYGSPPVHGILLVATILSDPNLKSL 330 (435)
Q Consensus 269 SK~~g~~G~RvG~~~~~~~~~~~~~~~~~-~-----------------l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~ 330 (435)
||.+|++|+|+||+++ +++ +++ . +.+.......+++.++|.++..+|.... .
T Consensus 259 sK~~~~~G~r~G~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~---~ 328 (437)
T 3g0t_A 259 SKAFSYAGQRIGVLMI---SGK----LYEREYPDLEESFGRLRFGEALSSSALYALSSGATHSAQWGMAAMLKACN---D 328 (437)
T ss_dssp TTTTSCGGGCCEEEEE---CHH----HHHCBCGGGHHHHSCSBHHHHHHTTHHHHHHSSSCHHHHHHHHHHHHHHH---T
T ss_pred ccCCCCccceeEEEEE---CHH----HhhhhhhcccccccccchhHHHHHHHHhhhcCCCCHHHHHHHHHHHhCcH---h
Confidence 9999999999999974 777 666 5 6665555567889999999998886531 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccc------cc-CcceeEecCC---CHHHHHHHhhhccEEEeCC----
Q 013839 331 WIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHI------TN-QLGMFCFSGL---TPYQVDRLAKEFHIYMTQD---- 396 (435)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~------~~-~~g~~~~~~~---~~~~~~~ll~~~gI~i~pg---- 396 (435)
|..++++.+++++++++.+.+.|++++ +.+. .+ .+++|+|+.+ +.+.+...|.++||.+.|+
T Consensus 329 ~~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~~~~~~ 404 (437)
T 3g0t_A 329 GEYNFRDSVIEYGRKARIMKKMFLDNG----FNIVYDKDGNEPLADGFYFTVGYKGMDSSKLIEKFVRYGMCAITLKTTG 404 (437)
T ss_dssp TSCCHHHHHHHHHHHHHHHHHHHHTTT----EEESSCEETTEECCSSSEEEEEETTCCHHHHHHHHHHTTEECEESTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC----CEEeccccCCCCCceeEEEEEecCCCCHHHHHHHHHHcCeEEeeccccC
Confidence 112278889999999999999999885 4555 34 7889999854 5555544445679999986
Q ss_pred ----C--cEEeccCCCCcHHHHHHHHHHHHHh
Q 013839 397 ----G--RISMAGVTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 397 ----g--Ris~~~~~~e~i~~~~~~l~~~l~~ 422 (435)
+ |++++..+++++++++++|++++++
T Consensus 405 ~~~~~~iRis~~~~~~e~i~~~~~~l~~~~~~ 436 (437)
T 3g0t_A 405 SKRNEAMRICTSLLPESQFPDLEKRLQMLNAE 436 (437)
T ss_dssp CCCTTCEEEECSSSCGGGHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 2 9999866899999999999998753
No 36
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}
Probab=100.00 E-value=1.2e-41 Score=338.21 Aligned_cols=340 Identities=14% Similarity=0.164 Sum_probs=264.4
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcC----CCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEe
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAG----SEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQ 122 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~ 122 (435)
.+++++|+|+.|.+ +. +.++.+++.+.+.+.. .....|++..|.++||+++++++. .+...++++|+ +
T Consensus 66 ~~~~~~i~l~~g~~-~~---~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~--~g~~~~~~~i~--~ 137 (449)
T 3qgu_A 66 NPDAKIISLGIGDT-TE---PLPKYIADAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFY--GHAGRAADEIF--I 137 (449)
T ss_dssp CTTCCCEECSSCCC-CC---CCCHHHHHHHHHHHHGGGGSCCCCCSTTTTCCHHHHHHHHHHHH--TTTTCCGGGEE--E
T ss_pred CCCCCEEEeeCCCC-CC---CCCHHHHHHHHHHHHhhccccCCCCCCCCCCcHHHHHHHHHHHH--cCCCCCHHHEE--E
Confidence 45678999999985 43 3344444444343331 235679998999999999999985 33334477888 9
Q ss_pred cCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCC----------eeeeeecCCCCCCcChHhHHHHhhcC
Q 013839 123 ALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIP----------ERTYHYYDPDSKSLDFAALMDDIKNA 192 (435)
Q Consensus 123 t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~----------~~~v~~~~~~~~~~d~e~l~~~i~~~ 192 (435)
++|+++++.++ .+++.+||+|++++|+|.++...++..|++ ++.+++.+++++..|++++
T Consensus 138 t~G~~~al~~~---~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 207 (449)
T 3qgu_A 138 SDGSKCDIARI---QMMFGSKPTVAVQDPSYPVYVDTSVMMGMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKA------- 207 (449)
T ss_dssp ESCHHHHHHHH---HHHHCSSSCEEEEESCCTHHHHHHHHHTCSCCBCSSSBTTEEEEECCGGGTTCCCGGGC-------
T ss_pred ccCHHHHHHHH---HHHhCCCCEEEEcCCCChhHHHHHHHcCCcccccccccceeEEEecccccCCcCChhHc-------
Confidence 99999998876 456789999999999999999999999998 8888884433455554432
Q ss_pred CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccc
Q 013839 193 PDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSM 272 (435)
Q Consensus 193 ~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~ 272 (435)
++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. ...++..+....++++++.|+||.+
T Consensus 208 -~~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~--~~~~~~~~~~~~~~~i~~~s~sK~~ 284 (449)
T 3qgu_A 208 -KRTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPD--CPKTIYEIPGADEVAIETCSFSKYA 284 (449)
T ss_dssp -CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTT--SCSSGGGSTTGGGTEEEEEECSGGG
T ss_pred -CCCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCC--CCCCHhhccCCCCcEEEEecchhhc
Confidence 4577888889999999999999999999999999999999999999988641 2234444433457799999999999
Q ss_pred cccCCcccEEEEEecChhHHHHHHH--------HHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHH
Q 013839 273 GLYGHRVGCLSILCVDSKQAAAIRS--------QIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQR 344 (435)
Q Consensus 273 g~~G~RvG~~~~~~~~~~~~~~~~~--------~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~ 344 (435)
|++|+|+||+++ +++ +++ .+.......+.+++.++|.++..++.+.. .+++++.++++++
T Consensus 285 g~~G~r~G~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-----~~~~~~~~~~~~~ 352 (449)
T 3qgu_A 285 GFTGVRLGWTVV---PKA----LKYANGEPVHADWNRVMTTCFNGASNIVQAGGLACLQPEG-----LKEMNAMIKFYKE 352 (449)
T ss_dssp TCTTCCCEEEEC---CTT----CBCTTSCBHHHHHHHHHHHSCCCCCHHHHHHHHHHTSHHH-----HHHHHHHHHHHHH
T ss_pred CCccceeEEEec---CHH----HHhhhhhhHHHHHHHHhhcccCCCCHHHHHHHHHHHhhcC-----HHHHHHHHHHHHH
Confidence 999999999964 666 443 45554555667889999999999987632 2567888999999
Q ss_pred HHHHHHHHHHhhCCCCCccccccCcceeEecCC---CH-HHHHHHhhhccEEEeCC--------C--cEEeccCCCCcHH
Q 013839 345 KRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL---TP-YQVDRLAKEFHIYMTQD--------G--RISMAGVTTGNVN 410 (435)
Q Consensus 345 ~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~---~~-~~~~~ll~~~gI~i~pg--------g--Ris~~~~~~e~i~ 410 (435)
+++.+.+.|+++| +.+..+++++|+|+.+ +. +++..+++++||.+.|| + ||+++. ++++++
T Consensus 353 ~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gI~v~pg~~f~~~~~~~iRis~~~-~~e~i~ 427 (449)
T 3qgu_A 353 NAQILKTTFTEMG----FSVYGGDDAPYIWVGFPGKPSWDVFAEILERCNIVTTPGSGYGPAGEGFVRASAFG-SRENIL 427 (449)
T ss_dssp HHHHHHHHHHHTT----CCEEESSSSSEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS-CHHHHH
T ss_pred HHHHHHHHHHHCC----CeeeCCCCeeEEEEECCCCCHHHHHHHHHHHCCEEEecchHhCCCCCCeEEEEecC-CHHHHH
Confidence 9999999999886 5677788899999966 33 45577777779999986 2 999866 899999
Q ss_pred HHHHHHHHHHHhhh
Q 013839 411 YLANAIHEVTRSEQ 424 (435)
Q Consensus 411 ~~~~~l~~~l~~~~ 424 (435)
+++++|++++++..
T Consensus 428 ~~l~~l~~~~~~~~ 441 (449)
T 3qgu_A 428 EAVRRFKEAYGKRN 441 (449)
T ss_dssp HHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999986543
No 37
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}
Probab=100.00 E-value=1.2e-41 Score=336.02 Aligned_cols=347 Identities=16% Similarity=0.062 Sum_probs=265.6
Q ss_pred CCCeeeeecceecCCCCCcccc-hHHHHHH---HHhcC--CCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEe
Q 013839 49 SPYKINLGVGAYRDDKGRPVVL-QCVREAE---AKIAG--SEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQ 122 (435)
Q Consensus 49 ~~~~i~l~~g~~~~~~~~~~~~-~~~~~~~---~~~~~--~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~ 122 (435)
.+..|||+.|.| +.. ..|. +.+.++. ..+.. ....+|++..|.++||+++++++ +. ++++|+ +
T Consensus 32 ~~~~i~~~~G~p-~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~-~~-----~~~~i~--~ 100 (427)
T 3ppl_A 32 KNLKLDLTRGKP-SSE--QLDFADELLALPGKGDFKAADGTDVRNYGGLDGIVDIRQIWADLL-GV-----PVEQVL--A 100 (427)
T ss_dssp TCCCEECCCCSC-CHH--HHHTTGGGGGCSCTTCCBCTTSCBTTSSCCSSCCHHHHHHHHHHH-TS-----CGGGEE--E
T ss_pred CCceEecCCCCC-ChH--HCCCcHHHHHHhhhHHHhhccchhhcCCCCCCCcHHHHHHHHHHh-CC-----CcceEE--E
Confidence 457899999997 322 2221 1233333 22221 23567999999999999999998 32 267888 9
Q ss_pred cCCchhHHH--HHHHHHHHhC--C----------CCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHH
Q 013839 123 ALSGTGACR--LFAEFQRRFH--P----------ESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDD 188 (435)
Q Consensus 123 t~gg~~a~~--~~~~~~~~~~--~----------gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~ 188 (435)
|+|+++++. ++ +..++. | ||+|++++|+|..+...++..|++++.+|+. ++ ++|++.|+++
T Consensus 101 t~G~~~al~~~~~--~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~~~g~~~~~v~~~-~~--g~d~~~l~~~ 175 (427)
T 3ppl_A 101 GDASSLNIMFDVI--SWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFSITERFGFEMISVPMN-ED--GPDMDAVEEL 175 (427)
T ss_dssp CSSCHHHHHHHHH--HHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHTTCEEEEEEEE-TT--EECHHHHHHH
T ss_pred eCCcHHHHHHHHH--HHHHhccCCcccccccCCCCCEEEEcCCCcHHHHHHHHHcCCEEEEeCCC-CC--CCCHHHHHHH
Confidence 999999994 55 444555 5 9999999999999999999999999999984 43 5999999999
Q ss_pred hhcCCCCcEEEE-eCCCCCCCCCCCCHHHHHHHHHHH-HhcCceeeeeccCCCccCCCCcccHHHHHHh---hhcCCeEE
Q 013839 189 IKNAPDSSFFLL-HPSAHNPTGVDPTEEQWREISYQF-KVKGHFPFFDMAYQGFASGDLDKDAQAIRIF---LEDEHLIG 263 (435)
Q Consensus 189 i~~~~~~~~~v~-~~~p~NPtG~~~~~~~l~~i~~~~-~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~---~~~~~~~i 263 (435)
+.. +++++++ +++||||||.+++.+++++|+++| ++||+++|+||+|.++.+++......++..+ .+..++++
T Consensus 176 l~~--~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 253 (427)
T 3ppl_A 176 VKN--PQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFW 253 (427)
T ss_dssp TTS--TTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEE
T ss_pred Hhc--CCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCcccccCCCCCCccchhhhhhccCCCCcEE
Confidence 842 4677776 458999999999999999999999 9999999999999997765421111122222 23567899
Q ss_pred EEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Q 013839 264 CAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQ 343 (435)
Q Consensus 264 ~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~ 343 (435)
+++||||. +++|+|+||+++ +++ +++.+.........+++.+.|.++..++.+.. .+.+++++.++.++
T Consensus 254 ~~~S~SK~-~~~G~r~G~~~~---~~~----l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~---~~~~~~~~~~~~~~ 322 (427)
T 3ppl_A 254 AFTSTSKI-TLAGAGVSFFLT---SAE----NRKWYTGHAGIRGIGPNKVNQLAHARYFGDAE---GVRAVMRKHAASLA 322 (427)
T ss_dssp EEEESTTT-SCTTSSCEEEEC---CHH----HHHHHHHHHHHHCSCCCHHHHHHHHHHHCSHH---HHHHHHHHHHHHHH
T ss_pred EEechhhc-cCcCccEEEEEc---CHH----HHHHHHHHhhcccCCCCHHHHHHHHHHHhChh---hHHHHHHHHHHHHH
Confidence 99999999 679999999964 888 88888887776778899999999999998721 24466778888888
Q ss_pred HHHHHHHHHHHhh-CCCCCccccccCcceeEecCC---CHHHHHHHhhhccEEEeCCC--------------cEEeccCC
Q 013839 344 RKRTTLRQNLEKL-GSSLNWEHITNQLGMFCFSGL---TPYQVDRLAKEFHIYMTQDG--------------RISMAGVT 405 (435)
Q Consensus 344 ~~~~~l~~~l~~~-~~~~~~~~~~~~~g~~~~~~~---~~~~~~~ll~~~gI~i~pgg--------------Ris~~~~~ 405 (435)
++++.+.+.|.+. +.-..+.+..+++|+|+|+.+ +.+.+.++++++||.+.||| ||+++..+
T Consensus 323 ~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~~~~~Ris~~~~~ 402 (427)
T 3ppl_A 323 PKFNKVLEILDSRLAEYGVAQWTVPAGGYFISLDVVPGTASRVAELAKEAGIALTGAGSSYPLRQDPENKNLRLAPSLPP 402 (427)
T ss_dssp HHHHHHHHHHHHHHGGGTCCEECCCSBSSCEEEECSTTCHHHHHHHHHHTTEECCCTTTTSGGGCCTTSCEEEECCSSSC
T ss_pred HHHHHHHHHHHHhcCCCCceEEeCCCccEEEEEECCcchHHHHHHHHHHCCCEEecCcCcCCCCCCCCCCeEEEECCCCC
Confidence 8888888777542 210124566788999999976 35556556678999999831 99997667
Q ss_pred CCcHHHHHHHHHHHHHhhh
Q 013839 406 TGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 406 ~e~i~~~~~~l~~~l~~~~ 424 (435)
++++++++++|++++++..
T Consensus 403 ~~~i~~~~~~l~~~l~~~~ 421 (427)
T 3ppl_A 403 VEELEVAMDGVATCVLLAA 421 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8999999999999998765
No 38
>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Probab=100.00 E-value=5.8e-41 Score=328.91 Aligned_cols=366 Identities=14% Similarity=0.102 Sum_probs=275.4
Q ss_pred ccccCCCCCCchhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhH
Q 013839 26 WDHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLV 105 (435)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l 105 (435)
.+++.......+. ..+++.. ++++.|+|+.|.+... ..+.++...+.+...+... ...|++..|.+++|+++++++
T Consensus 16 ~~~~~~~~~~~~~-~~~~~~~-~g~~~i~l~~~~~~~~-~~~~~~~v~~a~~~~~~~~-~~~y~~~~g~~~l~~~la~~l 91 (406)
T 1xi9_A 16 ALSVEYAIRDVVL-PARELEK-KGIKVIRLNIGDPVKF-DFQPPEHMKEAYCKAIKEG-HNYYGDSEGLPELRKAIVERE 91 (406)
T ss_dssp HHTCCC--------CHHHHHH-TTCCCEECCCCCGGGT-TCCCCHHHHHHHHHHHHTT-CCSCCCTTCCHHHHHHHHHHH
T ss_pred HhcCChhHHHHHH-HHHHHHH-cCCCEEEecCCCCCcC-CCCCCHHHHHHHHHHHhcC-CCCCCCCCCcHHHHHHHHHHH
Confidence 3444444434455 5555544 4678999999996210 1233344444444444433 346988889999999999998
Q ss_pred cCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhH
Q 013839 106 YGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAAL 185 (435)
Q Consensus 106 ~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l 185 (435)
....+.+.+++++. +++||++|+.++ +..++.+||+|++++|+|.++...++..|++++.++..+++++.+|++.|
T Consensus 92 ~~~~g~~~~~~~v~--~t~g~~~al~~~--~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l 167 (406)
T 1xi9_A 92 KRKNGVDITPDDVR--VTAAVTEALQLI--FGALLDPGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDI 167 (406)
T ss_dssp HHHHCCCCCGGGEE--EESHHHHHHHHH--HHHHCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHH
T ss_pred HHhcCCCCCHHHEE--EcCChHHHHHHH--HHHhCCCCCEEEEcCCCCccHHHHHHHcCCEEEEeecCCCcCCcCCHHHH
Confidence 43212123367888 999999999998 66668899999999999999999999999999999984324677899999
Q ss_pred HHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCe-EEE
Q 013839 186 MDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHL-IGC 264 (435)
Q Consensus 186 ~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~-~i~ 264 (435)
++.++ ++++++++++|+||||.+++.+++++|+++|++||+++|+||+|.++.+++. ..++..+ + .++ +++
T Consensus 168 ~~~l~---~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~---~~~~~~~-~-~~~~~i~ 239 (406)
T 1xi9_A 168 RKKIT---DRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGE---HISPGSL-T-KDVPVIV 239 (406)
T ss_dssp HHHCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSC---CCCHHHH-C-SSSCEEE
T ss_pred HHhhC---cCceEEEEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccccCCC---CCCHHHc-C-CCceEEE
Confidence 99997 5688999999999999999999999999999999999999999999887421 1233333 2 567 999
Q ss_pred EecccccccccCCcccEEEEEecCh----hHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHH
Q 013839 265 AQSYAKSMGLYGHRVGCLSILCVDS----KQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMAD 340 (435)
Q Consensus 265 ~~s~SK~~g~~G~RvG~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~ 340 (435)
++|+||.++++|+|+||+++ +.++ + +++.+....... .+++.+.|.++..+|.... +.+++.++
T Consensus 240 ~~s~sK~~~~~G~r~G~~~~-~~~~~~~~~----l~~~l~~~~~~~-~~~~~~~~~a~~~~l~~~~------~~~~~~~~ 307 (406)
T 1xi9_A 240 MNGLSKVYFATGWRLGYMYF-VDPENKLSE----VREAIDRLARIR-LCPNTPAQFAAIAGLTGPM------DYLKEYMK 307 (406)
T ss_dssp EEESTTTTCCGGGCCEEEEE-ECTTCTTHH----HHHHHHHHHHHT-CCSCSHHHHHHHHHHHSCC------HHHHHHHH
T ss_pred EeccccccCCCccEEEEEEE-ecCchhHHH----HHHHHHHHHHhh-cCCCHHHHHHHHHHHhCCc------HHHHHHHH
Confidence 99999999999999999961 1277 7 777777655544 6788889999988885332 44778889
Q ss_pred HHHHHHHHHHHHHHhhCCCCCccccccCcceeEecC------CCHHH-HHHHhhhccEEEeCC--------C--cEEecc
Q 013839 341 RIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSG------LTPYQ-VDRLAKEFHIYMTQD--------G--RISMAG 403 (435)
Q Consensus 341 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~------~~~~~-~~~ll~~~gI~i~pg--------g--Ris~~~ 403 (435)
+++++++.+.+.|++++ ++.+..+++|+|+|+. .+.+. ...+++++||.+.|| + ||+++
T Consensus 308 ~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~lRis~~- 383 (406)
T 1xi9_A 308 KLKERRDYIYKRLNEIP---GISTTKPQGAFYIFPKIEVGPWKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFRAVFL- 383 (406)
T ss_dssp HHHHHHHHHHHHHHTST---TEECCCCCBSSEECCEECSCSCSSHHHHHHHHHHHHCEECEEGGGGCGGGTTBEEEECC-
T ss_pred HHHHHHHHHHHHHHhCC---CCeeecCCeeEEEEEecCccCCCCHHHHHHHHHHhCCEEEeCchhcCCCCCCEEEEEec-
Confidence 99999999999998873 2566677889998863 34444 456655789999875 2 99998
Q ss_pred CCCCcHHHHHHHHHHHHHhh
Q 013839 404 VTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 404 ~~~e~i~~~~~~l~~~l~~~ 423 (435)
.+++++++++++|++++++.
T Consensus 384 ~~~~~i~~~~~~l~~~l~~~ 403 (406)
T 1xi9_A 384 PPIEILEEAMDRFEKFMKER 403 (406)
T ss_dssp SCHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 48899999999999998764
No 39
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}
Probab=100.00 E-value=1.9e-41 Score=328.90 Aligned_cols=337 Identities=15% Similarity=0.135 Sum_probs=263.5
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCC-CeeeEecCCc
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEG-RSAGVQALSG 126 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~-~v~~~~t~gg 126 (435)
++++.|||+.|.+ +. ..++.+.+.+.+.+..+....|++..|.+++|+++++++....+.+.+++ +|. +++|+
T Consensus 23 ~g~~~idl~~~~~-~~---~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~--~~~g~ 96 (376)
T 2dou_A 23 RGVGLIDLSIGST-DL---PPPEAPLKALAEALNDPTTYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREAL--ALIGS 96 (376)
T ss_dssp TTCCCEECSSCCC-CC---CCCHHHHHHHHHHTTCGGGSSCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEE--EESSH
T ss_pred cCCCEEeccCCCC-CC---CCCHHHHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEE--EcCCc
Confidence 5678999999996 32 23334444334444333356688877999999999999832111112244 888 99999
Q ss_pred hhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCC
Q 013839 127 TGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHN 206 (435)
Q Consensus 127 ~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~N 206 (435)
++|+.++ +..++.+||+|+++.|+|.++...++..|++++.+|. ++++.+|++++++++. ++++++++++|||
T Consensus 97 ~~a~~~~--~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~--~~~~~~d~~~l~~~l~---~~~~~v~l~~p~n 169 (376)
T 2dou_A 97 QEGLAHL--LLALTEPEDLLLLPEVAYPSYFGAARVASLRTFLIPL--REDGLADLKAVPEGVW---REAKVLLLNYPNN 169 (376)
T ss_dssp HHHHHHH--HHHHCCTTCEEEEESSCCHHHHHHHHHTTCEEEEECB--CTTSSBCGGGSCHHHH---HHEEEEEECSSCT
T ss_pred HHHHHHH--HHHhcCCCCEEEECCCCcHhHHHHHHHcCCEEEEeeC--CCCCCCCHHHHHHhhc---cCceEEEECCCCC
Confidence 9999988 6667789999999999999999999999999999987 4566789999999987 5689999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEe
Q 013839 207 PTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILC 286 (435)
Q Consensus 207 PtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~ 286 (435)
|||.+++.+++++|+++|++||+++|+||+|.++.+++. ..++....+..+++++++|+||.+|++|+|+||+++
T Consensus 170 ptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~---~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~-- 244 (376)
T 2dou_A 170 PTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGE---APSPLALPGAKERVVELFSLSKSYNLAGFRLGFALG-- 244 (376)
T ss_dssp TTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSC---CCCGGGSTTGGGTEEEEEEHHHHHTCGGGCCEEEEE--
T ss_pred CcCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCC---CCChhhcCCCCCcEEEEecchhhcCChhheeEEEec--
Confidence 999999999999999999999999999999999887531 112222223346789999999999999999999964
Q ss_pred cChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccc
Q 013839 287 VDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHIT 366 (435)
Q Consensus 287 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 366 (435)
+++ +++.+.........+.+.+.|.++..+|.... +++++.+++++++++.+.+.|+++ +.+..
T Consensus 245 -~~~----~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~------~~~~~~~~~~~~~~~~l~~~L~~~-----~~~~~ 308 (376)
T 2dou_A 245 -SEE----ALARLERVKGVIDFNQYAGVLRMGVEALKTPK------EVVRGYARVYRERALGMAEALKGV-----LSLLP 308 (376)
T ss_dssp -CHH----HHHHHHHHHHHHCCCSCHHHHHHHHHHHTSCH------HHHHHHHHHHHHHHHHHHHHHTTT-----SEECC
T ss_pred -CHH----HHHHHHHHHHhcccCCCHHHHHHHHHHHhCcH------HHHHHHHHHHHHHHHHHHHHHHHh-----cCccC
Confidence 888 77777776655556788999999999997632 667888899999999999999775 34566
Q ss_pred cCcceeEecCC----CHH-HHHHHhhhccEEEeCC--------C--cEEeccCCCCcHHHHHHHHHHHH
Q 013839 367 NQLGMFCFSGL----TPY-QVDRLAKEFHIYMTQD--------G--RISMAGVTTGNVNYLANAIHEVT 420 (435)
Q Consensus 367 ~~~g~~~~~~~----~~~-~~~~ll~~~gI~i~pg--------g--Ris~~~~~~e~i~~~~~~l~~~l 420 (435)
+++|+|+|+.+ +.+ +...+++ +||.+.|| + ||+++. +++++++++++|++++
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~v~~g~~f~~~~~~~~Ris~~~-~~~~i~~~l~~l~~~l 375 (376)
T 2dou_A 309 PRATMYLWGRLPEGVDDLEFGLRLVE-RGVALAPGRGFGPGGKGFVRIALVR-PLEELLEAAKRIREAL 375 (376)
T ss_dssp CCBSSEEEEECCTTCCHHHHHHHHHH-TTEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHTC
T ss_pred CCeeEEEEEECCCCCCHHHHHHHHHH-CCEEEcCchhhCCCCCCeEEEEecC-CHHHHHHHHHHHHHHh
Confidence 77899998855 333 4466654 59999875 2 999976 8889999999988754
No 40
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*
Probab=100.00 E-value=2.9e-41 Score=333.50 Aligned_cols=363 Identities=12% Similarity=0.040 Sum_probs=275.6
Q ss_pred cccCCCCCCchhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCC--CCCCCCCCcccHHHHHHHHHh
Q 013839 27 DHVAPAAKDPINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGS--EFLESISASVSTKMVEESVKL 104 (435)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~Y~~~~g~~~lr~~ia~~ 104 (435)
+++....+. .+....+... .++.|+|+.|.+ +. +.++.+.+.+.+.+... ....|++..|.++++++++++
T Consensus 17 ~~~~~~~~~-~~~~~~~~~~--~~~~i~l~~~~~-~~---~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la~~ 89 (429)
T 1yiz_A 17 KRYQGSTKS-VWVEYIQLAA--QYKPLNLGQGFP-DY---HAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKL 89 (429)
T ss_dssp SSCCCCTTC-HHHHHHHHHH--HHCCEECCSSSC-SS---CCCHHHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHHH
T ss_pred HHhhhCCch-HHHHHHHHhc--cCCEEEecCCCC-CC---CCCHHHHHHHHHHHhccccCccCCCCCCCcHHHHHHHHHH
Confidence 444444443 3343333322 357899999986 32 33334444444444331 245798888999999999999
Q ss_pred HcCCCCccccCC-CeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCC-------
Q 013839 105 VYGKDSDVVKEG-RSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPD------- 176 (435)
Q Consensus 105 l~~~~~~~~~~~-~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~------- 176 (435)
+....+.+..++ ++. +++||++|+.++ +..++.+||+|+++.|+|.++...++..|++++.++..+++
T Consensus 90 l~~~~g~~~~~~~~v~--~~~g~~~a~~~~--~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 165 (429)
T 1yiz_A 90 YSQLVDRTINPMTEVL--VTVGAYEALYAT--IQGHVDEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISS 165 (429)
T ss_dssp HHHHHTSCCCTTTSEE--EESHHHHHHHHH--HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCSSSSEEG
T ss_pred HHHHhCCCCCCcCCEE--EecChHHHHHHH--HHHhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEEeCCcccccccccc
Confidence 832111122367 888 999999999988 66667899999999999999999999999999999884321
Q ss_pred -CCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHh
Q 013839 177 -SKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIF 255 (435)
Q Consensus 177 -~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~ 255 (435)
++++|++.|++++. ++++++++++|+||||.+++.+++++|+++|++||+++|+||+|.++.+++. ...++..+
T Consensus 166 ~~~~~d~~~l~~~l~---~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~ 240 (429)
T 1yiz_A 166 ADWVLDNNELEALFN---EKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPF--EHIRICTL 240 (429)
T ss_dssp GGCBCCHHHHHHHCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTS--CCCCGGGS
T ss_pred cCcccCHHHHHHHhc---cCceEEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCC--CCcChhhc
Confidence 57899999999996 6789999999999999999999999999999999999999999999887542 11223223
Q ss_pred hhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCC-----hhhHHH
Q 013839 256 LEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSD-----PNLKSL 330 (435)
Q Consensus 256 ~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~-----~~l~~~ 330 (435)
.+..++++++.|+||.+|++|+|+||+++ +++ +++.+.........+.+.+.|.++..+|.. ..
T Consensus 241 ~~~~~~~~~~~s~sK~~~~~G~r~G~~~~---~~~----~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~---- 309 (429)
T 1yiz_A 241 PGMWERTITIGSAGKTFSLTGWKIGWAYG---PEA----LLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKS---- 309 (429)
T ss_dssp TTTGGGEEEEEEHHHHHTCGGGCCEEEES---CHH----HHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTS----
T ss_pred cCCcCceEEEecchhccCCCCcceEEEEe---CHH----HHHHHHHHHhhcccCCChHHHHHHHHHHhcccccccc----
Confidence 22346899999999999999999999963 777 777777765555677889999988888865 21
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCCC----------------H-HHHHHHhhhccEEE
Q 013839 331 WIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLT----------------P-YQVDRLAKEFHIYM 393 (435)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~----------------~-~~~~~ll~~~gI~i 393 (435)
+.+++++.+++++++++.+.+.|++++ +.+..+++|+|+|+.+. . +++..+++++||.+
T Consensus 310 ~~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v 385 (429)
T 1yiz_A 310 PECYFNSISGELMAKRDYMASFLAEVG----MNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQG 385 (429)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHT----CEEEECSBSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEEC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCC----CcccCCCcceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEE
Confidence 125678888999999999999999886 45667788999998542 2 34465666789999
Q ss_pred eCC-------------C--cEEeccCCCCcHHHHHHHHHHHHH
Q 013839 394 TQD-------------G--RISMAGVTTGNVNYLANAIHEVTR 421 (435)
Q Consensus 394 ~pg-------------g--Ris~~~~~~e~i~~~~~~l~~~l~ 421 (435)
.|| + ||+++. +++++++++++|+++++
T Consensus 386 ~~g~~f~~~~~~~~~~~~iRis~~~-~~e~i~~~l~~l~~~l~ 427 (429)
T 1yiz_A 386 IPPSAFYSEPNKHLGEDFVRYCFFK-KDENLQKAAEILRKWKG 427 (429)
T ss_dssp BCGGGGSCGGGGGGTTTEEEEECCS-CHHHHHHHHHHHHHHSC
T ss_pred eCchHhCCCcccCCCCCeEEEEecC-CHHHHHHHHHHHHHhcc
Confidence 864 2 999986 88999999999988753
No 41
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=100.00 E-value=2.3e-41 Score=328.27 Aligned_cols=339 Identities=8% Similarity=0.027 Sum_probs=270.6
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCch
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~ 127 (435)
++++.|||+.|.+ +. +.++.+.+.+...+..+ ...|++ .| +++|+++++++....+.+..++++. +|+||+
T Consensus 21 ~g~~~idl~~~~~-~~---~~~~~v~~a~~~~~~~~-~~~y~~-~~-~~lr~~la~~~~~~~~~~~~~~~i~--~t~g~~ 91 (377)
T 3fdb_A 21 YGQGVLPLWVAES-DF---STCPAVLQAITDAVQRE-AFGYQP-DG-SLLSQATAEFYADRYGYQARPEWIF--PIPDVV 91 (377)
T ss_dssp SCTTSEECCSSCC-CS---CCCHHHHHHHHHHHHTT-CCSSCC-SS-CCHHHHHHHHHHHHHCCCCCGGGEE--EESCHH
T ss_pred cCCCeeeecccCC-CC---CCCHHHHHHHHHHHHcC-CCCCCC-CC-HHHHHHHHHHHHHHhCCCCCHHHEE--EeCChH
Confidence 5678999999984 22 34444444444454443 556988 77 8999999999853222223467888 999999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCC
Q 013839 128 GACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNP 207 (435)
Q Consensus 128 ~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NP 207 (435)
+|+.++ +..++.+||+|+++.|+|.++...++..|++++.++.. + + +|+++|++++. ++++++++++||||
T Consensus 92 ~a~~~~--~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~-~-~--~d~~~l~~~l~---~~~~~v~i~~p~np 162 (377)
T 3fdb_A 92 RGLYIA--IDHFTPAQSKVIVPTPAYPPFFHLLSATQREGIFIDAT-G-G--INLHDVEKGFQ---AGARSILLCNPYNP 162 (377)
T ss_dssp HHHHHH--HHHHSCTTCCEEEEESCCTHHHHHHHHHTCCEEEEECT-T-S--CCHHHHHHHHH---TTCCEEEEESSBTT
T ss_pred HHHHHH--HHHhcCCCCEEEEcCCCcHhHHHHHHHcCCEEEEccCC-C-C--CCHHHHHHHhc---cCCCEEEEeCCCCC
Confidence 999998 66678899999999999999999999999999999883 3 2 89999999998 56789999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEec
Q 013839 208 TGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCV 287 (435)
Q Consensus 208 tG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~ 287 (435)
||.+++.+++++|+++|++||+++|+||+|.++.+++ +....++..+.. .+++++++|+||.+|++|+|+||++ +.
T Consensus 163 tG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g-~~~~~~~~~~~~-~~~~i~~~s~sK~~g~~G~r~G~~~--~~ 238 (377)
T 3fdb_A 163 LGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDG-QHTVAAGVSDTA-ASVCITITAPSKAWNIAGLKCAQII--FS 238 (377)
T ss_dssp TTBCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSS-CCCCGGGSCHHH-HHHEEEEECSTTTTTCGGGCCEEEE--CC
T ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCC-CCCcccHHHccC-CCcEEEEEeChHhccCcchhheEEE--eC
Confidence 9999999999999999999999999999999988764 001122222211 4678999999999999999999986 33
Q ss_pred ChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCCccccc
Q 013839 288 DSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKL-GSSLNWEHIT 366 (435)
Q Consensus 288 ~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~ 366 (435)
+++ +++.+.........+++.++|.++..++.+.. +++++.+++++++++.+.+.|++. + ++.+..
T Consensus 239 ~~~----~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~------~~~~~~~~~~~~~~~~l~~~L~~~~~---~~~~~~ 305 (377)
T 3fdb_A 239 NPS----DAEHWQQLSPVIKDGASTLGLIAAEAAYRYGT------DFLNQEVAYLKNNHDFLLHEIPKRIP---GAKITP 305 (377)
T ss_dssp SHH----HHHHHHHSCHHHHCCCCHHHHHHHHHHHHHCH------HHHHHHHHHHHHHHHHHHHHHHHHST---TCEECC
T ss_pred CHH----HHHHHHHHHHhhcCCCCHHHHHHHHHHHhccH------HHHHHHHHHHHHHHHHHHHHHHhhCC---CceEec
Confidence 677 77777776656667899999999888887532 667888999999999999999884 3 267788
Q ss_pred cCcceeEecCC-----CHHHHHHHhhhccEEEeCCC----------cEEeccCCCCcHHHHHHHHHHHHHh
Q 013839 367 NQLGMFCFSGL-----TPYQVDRLAKEFHIYMTQDG----------RISMAGVTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 367 ~~~g~~~~~~~-----~~~~~~~ll~~~gI~i~pgg----------Ris~~~~~~e~i~~~~~~l~~~l~~ 422 (435)
++++++.|+.+ +.+++..+++++||.+.||. ||+++. +++++++++++|++++++
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~Ris~~~-~~e~i~~~l~~l~~~l~~ 375 (377)
T 3fdb_A 306 MQATYLMWIDFRDTTIEGSPSEFFIEKAKVAMNDGAWFGEDGTGFCRLNFAT-SREVLEEAIDRMAKAVSH 375 (377)
T ss_dssp CSBCSEEEEECTTSCCCSCHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHHHTT
T ss_pred CCeeEEEEEECcccCCCHHHHHHHHHhCCEEecCChhccCCCCCEEEEEeCC-CHHHHHHHHHHHHHHHhh
Confidence 89999988854 34567778777799999762 999986 889999999999998764
No 42
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1
Probab=100.00 E-value=7.1e-41 Score=329.30 Aligned_cols=355 Identities=14% Similarity=0.134 Sum_probs=268.5
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcC------CCCccccCCCeeeEec
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYG------KDSDVVKEGRSAGVQA 123 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~------~~~~~~~~~~v~~~~t 123 (435)
++.|+|+.|.|...+..+.++.+.+.+...+.......|++..|.+++|+++++++.. ..+.++++++|+ ++
T Consensus 33 ~~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~v~--~~ 110 (416)
T 1bw0_A 33 KPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNVV--LC 110 (416)
T ss_dssp SCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEE--EE
T ss_pred CCeEEecCcCCCcccCCCCCHHHHHHHHHHhhCCccCCcCCCCCCHHHHHHHHHHHHhhhcccccCCCCCCcceEE--Ee
Confidence 5789999999721122244444444444444443345798888999999999999951 233334577888 99
Q ss_pred CCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCC
Q 013839 124 LSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPS 203 (435)
Q Consensus 124 ~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~ 203 (435)
+|+++|+.++ +..++.+||+|++++|+|.++...++..|++++.+++.+++++.+|+++|++.+. ++++++++++
T Consensus 111 ~g~~~al~~~--~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~---~~~~~v~i~~ 185 (416)
T 1bw0_A 111 SGGSHGILMA--ITAICDAGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKD---DKTKLLIVTN 185 (416)
T ss_dssp SHHHHHHHHH--HHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCC---TTEEEEEEES
T ss_pred CChHHHHHHH--HHHhCCCCCEEEEcCCCcHhHHHHHHHcCcEEEEeecCcccCCCCCHHHHHHHhc---cCCeEEEEeC
Confidence 9999999988 6666889999999999999999999999999999988433357899999999987 5678999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcc--cHHHHHHhhhcCCeEEEEecccccccccCCcccE
Q 013839 204 AHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDK--DAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGC 281 (435)
Q Consensus 204 p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~ 281 (435)
|+||||.+++.+++++|+++|++||+++|+||+|.++.+++... ...++..+ +...++++++|+||.++++|+|+||
T Consensus 186 p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~-~~~~~~i~~~s~sK~~~~~Glr~G~ 264 (416)
T 1bw0_A 186 PSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADF-ETTVPRVILGGTAKNLVVPGWRLGW 264 (416)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSS-CCSCCEEEEEESTTTTSCGGGCCEE
T ss_pred CCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHc-cCCCcEEEEecchhhCCCCCceEEE
Confidence 99999999999999999999999999999999999988754200 11122222 2234689999999999999999999
Q ss_pred EEEEecCh-hHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 013839 282 LSILCVDS-KQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSL 360 (435)
Q Consensus 282 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 360 (435)
+++ +++ +..+.+...+++... ...+++.++|.++..+|.... .+++++.+++++++++.+.+.|++++
T Consensus 265 ~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~~--- 333 (416)
T 1bw0_A 265 LLY--VDPHGNGPSFLEGLKRVGM-LVCGPCTVVQAALGEALLNTP-----QEHLDQIVAKIEESAMYLYNHIGECI--- 333 (416)
T ss_dssp EEE--ECTTCSCHHHHHHHHHHHH-HHTCSCHHHHHHHHHHHHSSC-----HHHHHHHHHHHHHHHHHHHHHHTTST---
T ss_pred EEe--eCchhhHHHHHHHHHHHhc-cccCCCcHHHHHHHHHHhccc-----HHHHHHHHHHHHHHHHHHHHHHHhCC---
Confidence 974 344 333335444444322 245788899999988887422 25677888899999999999998763
Q ss_pred CccccccCcceeEecCC---------CHH-HHHHHhhhccEEEeCC------C--cEEeccCCCCcHHHHHHHHHHHHHh
Q 013839 361 NWEHITNQLGMFCFSGL---------TPY-QVDRLAKEFHIYMTQD------G--RISMAGVTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 361 ~~~~~~~~~g~~~~~~~---------~~~-~~~~ll~~~gI~i~pg------g--Ris~~~~~~e~i~~~~~~l~~~l~~ 422 (435)
++.+..+.+|+|+|+.+ +.+ ++..+++++||.+.|| + ||+++. +++++++++++|.+++++
T Consensus 334 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~iRis~~~-~~e~l~~~l~~l~~~l~~ 412 (416)
T 1bw0_A 334 GLAPTMPRGAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHAPGFTRLTTTR-PVEVYREAVERIKAFCQR 412 (416)
T ss_dssp TEEECCCCBTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTCTTEEEEECCS-CHHHHHHHHHHHHHHHHH
T ss_pred CCcccCCCeeEEEEEeCCHHHcCCCCCHHHHHHHHHHHCCEEEecccccCCCCeEEEEecC-CHHHHHHHHHHHHHHHHH
Confidence 25566677888988643 333 4466666789999986 2 999964 888999999999999876
Q ss_pred hh
Q 013839 423 EQ 424 (435)
Q Consensus 423 ~~ 424 (435)
..
T Consensus 413 ~~ 414 (416)
T 1bw0_A 413 HA 414 (416)
T ss_dssp HB
T ss_pred hh
Confidence 43
No 43
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1
Probab=100.00 E-value=3.3e-40 Score=323.87 Aligned_cols=345 Identities=14% Similarity=0.131 Sum_probs=267.6
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCch
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~ 127 (435)
.+++.|+|+.|.+ +. +.++.+.+.+ ..+..+ ...|++..|..++++++++++....+.+..++++. +++||+
T Consensus 41 ~g~~~i~l~~~~~-~~---~~~~~v~~a~-~~l~~~-~~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~--~~~g~t 112 (409)
T 2gb3_A 41 RGVRIHHLNIGQP-DL---KTPEVFFERI-YENKPE-VVYYSHSAGIWELREAFASYYKRRQRVDVKPENVL--VTNGGS 112 (409)
T ss_dssp TTCEEEECSSCCC-CS---CCCTHHHHHH-HHTCCS-SCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEE--EESHHH
T ss_pred cCCCEEeccCCCC-CC---CCCHHHHHHH-HHHhcC-CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCHHHEE--EeCCHH
Confidence 4678999999996 32 3344444444 555433 45698888999999999999954333233467888 999999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCC
Q 013839 128 GACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNP 207 (435)
Q Consensus 128 ~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NP 207 (435)
+|+.++ +..++.+||+|++++|+|..+...++..|++++.++..+++++.+ +++|++++. ++++++++++|+||
T Consensus 113 ~a~~~~--~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~-~~~l~~~l~---~~~~~v~~~~p~np 186 (409)
T 2gb3_A 113 EAILFS--FAVIANPGDEILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAI-PQNLESFIN---ERTKGIVLSNPCNP 186 (409)
T ss_dssp HHHHHH--HHHHCCTTCEEEEEESCCTHHHHHHHHHTCEEEEEECCGGGTSCC-CTTGGGGCC---TTEEEEEEESSCTT
T ss_pred HHHHHH--HHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEeccCCCCCCcc-HHHHHHhhC---cCCeEEEECCCCCC
Confidence 999998 666688999999999999999999999999999998742234555 889988886 57899999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEec
Q 013839 208 TGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCV 287 (435)
Q Consensus 208 tG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~ 287 (435)
||.+++.+++++|.++|++||+++|+||+|..+.+++. ..++ +.+..+++++++|+||.+|++|+|+||++ +
T Consensus 187 tG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~---~~~~--~~~~~~~~i~~~s~sK~~g~~G~r~G~~~--~- 258 (409)
T 2gb3_A 187 TGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGE---FASA--LSIESDKVVVIDSVSKKFSACGARVGCLI--T- 258 (409)
T ss_dssp TCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSC---CCCG--GGSCCTTEEEEEESTTTTTCGGGCCEEEE--C-
T ss_pred CCCCcCHHHHHHHHHHHHHcCCEEEEECcccccccCCC---CCCc--cccCCCCEEEEecchhccCCccceEEEEE--E-
Confidence 99999999999999999999999999999998887531 1111 22234679999999999999999999996 4
Q ss_pred Ch-hHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccc-c
Q 013839 288 DS-KQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEH-I 365 (435)
Q Consensus 288 ~~-~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~ 365 (435)
++ + +++.+........ +++.+.|.++..+|+... +++++.+++++++++.+.+.|++++ +.+ .
T Consensus 259 ~~~~----l~~~l~~~~~~~~-~~~~~~~~a~~~~l~~~~------~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~ 323 (409)
T 2gb3_A 259 RNEE----LISHAMKLAQGRL-APPLLEQIGSVGLLNLDD------SFFDFVRETYRERVETVLKKLEEHG----LKRFT 323 (409)
T ss_dssp SCHH----HHHHHHHHHHHSC-CCCHHHHHHHHHHHTCCH------HHHHHHHHHHHHHHHHHHHHHHHTT----CCCBC
T ss_pred CcHH----HHHHHHHHHhccC-CCCHHHHHHHHHHHhccH------HHHHHHHHHHHHHHHHHHHHHHHcC----ceeee
Confidence 55 7 7777776655444 788999999989996532 5678888999999999999999875 445 5
Q ss_pred ccCcceeEecCC---CHHH-HHHHhhh-----ccEEEeCC-----------C--cEEeccCCCCcHHHHHHHHHHHHHhh
Q 013839 366 TNQLGMFCFSGL---TPYQ-VDRLAKE-----FHIYMTQD-----------G--RISMAGVTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 366 ~~~~g~~~~~~~---~~~~-~~~ll~~-----~gI~i~pg-----------g--Ris~~~~~~e~i~~~~~~l~~~l~~~ 423 (435)
.+++|+|+|+.+ +.+. ...++++ +||.+.|| + ||+++ .+++++++++++|++++++.
T Consensus 324 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~~~~~~~~iRis~~-~~~e~i~~~~~~l~~~l~~~ 402 (409)
T 2gb3_A 324 KPSGAFYITAELPVEDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPGLGKKEIRIACV-LEKDLLSRAIDVLMEGLKMF 402 (409)
T ss_dssp CCSBSSEEEEECSSSCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTTTTSSEEEEECC-SCHHHHHHHHHHHHHHHHHH
T ss_pred CCCeeEEEEEEeCCCCHHHHHHHHHhccccccCcEEEeCchHhCCCCCCCCCEEEEEeC-CCHHHHHHHHHHHHHHHHHh
Confidence 678899999754 4444 4666554 49999864 2 99998 48899999999999999876
Q ss_pred hhhhcccc
Q 013839 424 QETAKILC 431 (435)
Q Consensus 424 ~~~~~~~~ 431 (435)
. .....|
T Consensus 403 ~-~~~~~~ 409 (409)
T 2gb3_A 403 C-SSRISC 409 (409)
T ss_dssp H-C-----
T ss_pred h-hcccCC
Confidence 5 444444
No 44
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0
Probab=100.00 E-value=4.5e-41 Score=326.15 Aligned_cols=347 Identities=11% Similarity=0.048 Sum_probs=268.0
Q ss_pred CCchhhHHHHHhc-CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCcc
Q 013839 34 KDPINGVTEAFLA-DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDV 112 (435)
Q Consensus 34 ~~~~~~~~~~~~~-~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~ 112 (435)
++.........+. ..+.++|||+.|.+ +. +.+ +.+.+++.+.... ...|++..|.+++|+++++++....+.+
T Consensus 6 ~~~~~~~~~~~~~~~~~g~~i~l~~~~~-~~---~~~-~~v~~a~~~~~~~-~~~y~~~~g~~~lr~~la~~l~~~~g~~ 79 (376)
T 3ezs_A 6 PYPFERLRALLKEITPKKRGLDLGIGEP-QF---ETP-KFIQDALKNHTHS-LNIYPKSAFEESLRAAQRGFFKRRFKIE 79 (376)
T ss_dssp CCHHHHHHHHHTTCCCSSCCCBCSSCCC-CS---CCC-HHHHHHHHTTGGG-GGSCCCTTCCHHHHHHHHHHHHHHHSCC
T ss_pred cchHHHHHHHHHhhhccCCEEEeCCCCC-CC---CCC-HHHHHHHHHhhhh-cCCCCCCCCCHHHHHHHHHHHHHHhCCC
Confidence 3444444444432 11238999999995 32 333 4444444444333 5679999999999999999983222222
Q ss_pred ccCCCeeeEecCCchhHHHHHHHHHHHhCC--CCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhh
Q 013839 113 VKEGRSAGVQALSGTGACRLFAEFQRRFHP--ESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIK 190 (435)
Q Consensus 113 ~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~--gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~ 190 (435)
+++++|. +|+|+++++.++ +..++.+ ||+|+++.|+|..+...++..|++++.++..+++ ++++ ++++.+.
T Consensus 80 ~~~~~i~--~t~g~~~al~~~--~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~-~l~~~~~ 152 (376)
T 3ezs_A 80 LKENELI--STLGSREVLFNF--PSFVLFDYQNPTIAYPNPFYQIYEGAAKFIKAKSLLMPLTKEN--DFTP-SLNEKEL 152 (376)
T ss_dssp CCGGGEE--EESSSHHHHHHH--HHHHTTTCSSCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGG--TSCC-CCCHHHH
T ss_pred CCHHHEE--ECcCcHHHHHHH--HHHHcCCCCCCEEEEecCCcHhHHHHHHHcCCEEEEcccCCCC--Ccch-hHHhhhc
Confidence 3367888 999999999988 6667889 9999999999999999999999999999884322 4454 6666666
Q ss_pred cCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhh-----cCCeEEEE
Q 013839 191 NAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLE-----DEHLIGCA 265 (435)
Q Consensus 191 ~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~-----~~~~~i~~ 265 (435)
++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. ..+.....+ ..++++++
T Consensus 153 ---~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~ 226 (376)
T 3ezs_A 153 ---QEVDLVILNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSEIYENTP---PPSLLEACMLAGNEAFKNVLVI 226 (376)
T ss_dssp ---HHCSEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSC---CCCHHHHHHHTTCTTCTTEEEE
T ss_pred ---cCCCEEEEcCCCCCcCCCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCC---CCCHHHccccccccccCcEEEE
Confidence 4678888999999999999999999999999999999999999999888642 112222222 46789999
Q ss_pred ecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHH
Q 013839 266 QSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRK 345 (435)
Q Consensus 266 ~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~ 345 (435)
+|+||.+|++|+|+||+++ +++ +++.+.........+++.+.|.++..++... +++++.+++++++
T Consensus 227 ~s~sK~~g~~G~r~G~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-------~~~~~~~~~~~~~ 292 (376)
T 3ezs_A 227 HSLSKRSSAPGLRSGFIAG---DSR----LLEKYKAFRAYLGYTSANAIQKASEAAWLDD-------RHAEFFRNIYANN 292 (376)
T ss_dssp EESTTTTTCGGGCCEEEEE---CHH----HHHHHHHHHTTTCCCCCHHHHHHHHHHHHCS-------HHHHHHHHHHHHH
T ss_pred ecchhccCCccceeEEEee---CHH----HHHHHHHHHhhhcCCCChHHHHHHHHHHhCc-------HHHHHHHHHHHHH
Confidence 9999999999999999964 888 8888887766666788999999999998864 5578888999999
Q ss_pred HHHHHHHHHhhCCCCCccccccCcceeEecCC-CHH-HHHHHhhhccEEEeCC----------C--cEEeccCCCCcHHH
Q 013839 346 RTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL-TPY-QVDRLAKEFHIYMTQD----------G--RISMAGVTTGNVNY 411 (435)
Q Consensus 346 ~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~-~~~-~~~~ll~~~gI~i~pg----------g--Ris~~~~~~e~i~~ 411 (435)
++.+.+.|+ + +. .+.+|+|+|+.+ +.+ +...+++++||.+.|| + ||+++. +++++++
T Consensus 293 ~~~l~~~l~--~----~~--~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~-~~~~i~~ 363 (376)
T 3ezs_A 293 LKLARKIFK--N----TL--IYPYSFYVYLPVQNGENFAKTLYQNEGIITLPALYLGRNRIGADYVRLALVY-DTPLLEK 363 (376)
T ss_dssp HHHHHHHST--T----CC--CCSBSSEEEEECSCHHHHHHHHHHHHCCBCEEGGGGCSTTTTTTEEEEECCS-CHHHHHH
T ss_pred HHHHHHHhc--C----CC--CCCcceEEEEECCCHHHHHHHHHHhCCEEEeCcHHhCCCCCCCCeEEEEEcC-CHHHHHH
Confidence 999998887 3 33 578899999987 344 4566655589999874 1 999976 8999999
Q ss_pred HHHHHHHHHHh
Q 013839 412 LANAIHEVTRS 422 (435)
Q Consensus 412 ~~~~l~~~l~~ 422 (435)
++++|++++++
T Consensus 364 ~l~~l~~~l~~ 374 (376)
T 3ezs_A 364 PLEIIETYREN 374 (376)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHh
Confidence 99999998753
No 45
>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1
Probab=100.00 E-value=3.4e-41 Score=332.55 Aligned_cols=352 Identities=16% Similarity=0.155 Sum_probs=268.6
Q ss_pred CCCeeeeecceecCCCCCcccchHHHHHHHH-hcCC--CCCCCCCCcccHHHHHHHHHhHcCCCCcc-ccCCCeeeEecC
Q 013839 49 SPYKINLGVGAYRDDKGRPVVLQCVREAEAK-IAGS--EFLESISASVSTKMVEESVKLVYGKDSDV-VKEGRSAGVQAL 124 (435)
Q Consensus 49 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~-~~~~~v~~~~t~ 124 (435)
+++.|||+.|.| +.. ..+.+.+.+++.. +... ....|++..|.+++|+++++++....+.+ ..+++|. +++
T Consensus 42 ~~~~idl~~g~~-~~~--~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~v~--~t~ 116 (425)
T 1vp4_A 42 DKDAISFGGGVP-DPE--TFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLI--FTV 116 (425)
T ss_dssp STTCEECCCCSC-CGG--GSCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEE--EEE
T ss_pred CCCceeCCCCCC-Ccc--cCCHHHHHHHHHHHHhhcchhhcCCCCCCCCHHHHHHHHHHHHhccCCCCCCcccEE--Eec
Confidence 568999999986 322 2233444444333 3221 13569888899999999999983211111 2367888 999
Q ss_pred CchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcC-----CCCcEEE
Q 013839 125 SGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNA-----PDSSFFL 199 (435)
Q Consensus 125 gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~-----~~~~~~v 199 (435)
|+++|+.++ +.+++.+||+|+++.|+|.++...++..|++++.++.. ++ ++|++.|++++++. ..+++++
T Consensus 117 G~~~al~~~--~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~-~~--~~d~~~l~~~l~~~~~~~~~~~~~~v 191 (425)
T 1vp4_A 117 GSQQALDLI--GKLFLDDESYCVLDDPAYLGAINAFRQYLANFVVVPLE-DD--GMDLNVLERKLSEFDKNGKIKQVKFI 191 (425)
T ss_dssp HHHHHHHHH--HHHHCCTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEE-TT--EECHHHHHHHHHHHHHTTCGGGEEEE
T ss_pred cHHHHHHHH--HHHhCCCCCEEEEeCCCcHHHHHHHHHcCCEEEEeccC-CC--CCCHHHHHHHHHhhhhcccCCCceEE
Confidence 999999888 66678899999999999999999999999999999983 33 59999999998731 1257787
Q ss_pred -EeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCc
Q 013839 200 -LHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHR 278 (435)
Q Consensus 200 -~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~R 278 (435)
++++|+||||.+++.+++++|+++|++||+++|+||+|.++.+++. ...++..+ +..+++++++|+||.++ +|+|
T Consensus 192 ~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~-~~~~~~i~~~s~sK~~~-~G~r 267 (425)
T 1vp4_A 192 YVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGE--TVDPIFKI-GGPERVVLLNTFSKVLA-PGLR 267 (425)
T ss_dssp EEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSC--CCCCHHHH-HCTTTEEEEEESTTTTC-GGGC
T ss_pred EECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCC--CCcCHHHh-CCCCCEEEEeccccccc-cccc
Confidence 5899999999999999999999999999999999999999887542 11233333 23467899999999999 9999
Q ss_pred ccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 013839 279 VGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGS 358 (435)
Q Consensus 279 vG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 358 (435)
+||+++ +++ +++.+.........+.+.++|.++..+|.... +.+++++.+++++++++.+.+.|++..
T Consensus 268 ~G~~~~---~~~----~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~----~~~~~~~~~~~~~~~~~~l~~~L~~~~- 335 (425)
T 1vp4_A 268 IGMVAG---SKE----FIRKIVQAKQSADLCSPAITHRLAARYLERYD----LLEQLKPTIELYRRKRTVMLNALEEYF- 335 (425)
T ss_dssp EEEEEC---CHH----HHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSC----HHHHTHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred eEEEee---CHH----HHHHHHHHhhhhcCCCCHHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHHHHHHHHHHHhC-
Confidence 999964 777 77777766555556778999999998887532 346778889999999999999998761
Q ss_pred CC--CccccccCcceeEecCC----CH-HHHHHHhhhccEEEeCC----------C--cEEeccCCCCcHHHHHHHHHHH
Q 013839 359 SL--NWEHITNQLGMFCFSGL----TP-YQVDRLAKEFHIYMTQD----------G--RISMAGVTTGNVNYLANAIHEV 419 (435)
Q Consensus 359 ~~--~~~~~~~~~g~~~~~~~----~~-~~~~~ll~~~gI~i~pg----------g--Ris~~~~~~e~i~~~~~~l~~~ 419 (435)
+. ++.+..+.+|+|+|+.+ +. ++.+.+++ +||.+.|| + ||+++..+++++++++++|+++
T Consensus 336 ~~~~g~~~~~~~~g~~~~~~~~~~~~~~~l~~~l~~-~gi~v~~g~~f~~~~~~~~~iRis~~~~~~e~i~~~l~~l~~~ 414 (425)
T 1vp4_A 336 SDIPGVKWVKSEGGLFIWLTLPEGFDTWEMFEYAKR-KKVFYVPGRVFKVYDEPSPSMRLSFCLPPDEKIVEGIKRLREV 414 (425)
T ss_dssp TTSTTCEECCCSBSSEEEEECCTTCCTTTTHHHHHH-HTEECEEGGGGCTTCCCCSEEEEECSSSCHHHHHHHHHHHHHH
T ss_pred CCCCceEEecCCccEEEEEEcCCCCCHHHHHHHHHH-CCCEEECchhhcCCCCCCCeEEEEeCCCCHHHHHHHHHHHHHH
Confidence 11 25566678899999855 23 34566654 59999874 2 9999765789999999999999
Q ss_pred HHhhhhhh
Q 013839 420 TRSEQETA 427 (435)
Q Consensus 420 l~~~~~~~ 427 (435)
+++...+.
T Consensus 415 l~~~~~~~ 422 (425)
T 1vp4_A 415 VLEYGKEK 422 (425)
T ss_dssp HHHHHHHT
T ss_pred HHHHHhhc
Confidence 98766443
No 46
>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}
Probab=100.00 E-value=1.2e-40 Score=328.43 Aligned_cols=358 Identities=13% Similarity=0.040 Sum_probs=266.6
Q ss_pred chhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhc--CC-CCCCCCCCcccHHHHHHHHHhHcCCCCcc
Q 013839 36 PINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIA--GS-EFLESISASVSTKMVEESVKLVYGKDSDV 112 (435)
Q Consensus 36 ~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~ 112 (435)
.++....++.. . ..+|+|+.|.| +...++.++...+.+..++. .+ ...+|++..|.++||+++++++ +.
T Consensus 20 ~~~~~~~~l~~-~-~~~i~l~~g~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~-~~---- 91 (422)
T 3d6k_A 20 EVTAKYAELKA-K-NLSLDLTRGKP-SAEQLDLSNDLLSLPGGDFRTKDGVDCRNYGGLLGIADIRELWAEAL-GL---- 91 (422)
T ss_dssp HHHHHHHHHHH-T-TCCEECCCCSC-CHHHHHTTGGGGGCSTTCCBCTTCCBTTSSCCSSCCHHHHHHHHHHH-TC----
T ss_pred HHHHHHHHHhc-c-CCeEeCCCCCC-ChhhCCCcHHHHHHHHHHHhhccchhhhCCCCCCCCHHHHHHHHHHh-CC----
Confidence 45555555543 2 35899999996 31111333333332222321 21 3567999999999999999998 32
Q ss_pred ccCCCeeeEecCCchhHH--HHHHHHHHHhCC------------CCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCC
Q 013839 113 VKEGRSAGVQALSGTGAC--RLFAEFQRRFHP------------ESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSK 178 (435)
Q Consensus 113 ~~~~~v~~~~t~gg~~a~--~~~~~~~~~~~~------------gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~ 178 (435)
++++|+ +|+|+++++ .++ +..+..+ ||+|++++|+|.++...++..|++++.+|+. ++
T Consensus 92 -~~~~i~--~t~G~~~al~l~~~--~~~l~~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~-~~-- 163 (422)
T 3d6k_A 92 -PADLVV--AQDGSSLNIMFDLI--SWSYTWGNNDSSRPWSAEEKVKWLCPVPGYDRHFTITEHFGFEMINVPMT-DE-- 163 (422)
T ss_dssp -CGGGEE--ECSSCHHHHHHHHH--HHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHHTCEEEEEEEE-TT--
T ss_pred -ChhHEE--EecchHHHHHHHHH--HHHhcCcccccccccccCCCCEEEEeCCccHHHHHHHHHcCCEEEecCCC-CC--
Confidence 267888 899999987 444 3333444 3589999999999999999999999999983 43
Q ss_pred CcChHhHHHHhhcCCCCcEEEE-eCCCCCCCCCCCCHHHHHHHHHHHH-hcCceeeeeccCCC--ccCCCCcccHHHHHH
Q 013839 179 SLDFAALMDDIKNAPDSSFFLL-HPSAHNPTGVDPTEEQWREISYQFK-VKGHFPFFDMAYQG--FASGDLDKDAQAIRI 254 (435)
Q Consensus 179 ~~d~e~l~~~i~~~~~~~~~v~-~~~p~NPtG~~~~~~~l~~i~~~~~-~~~~~vi~Deay~~--~~~~~~~~~~~~~~~ 254 (435)
++|++.|++.+++ .++++++ +++||||||.+++.+++++|+++|+ +|++++|+||+|.. +.+++ ....++..
T Consensus 164 g~d~~~l~~~l~~--~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~--~~~~~~~~ 239 (422)
T 3d6k_A 164 GPDMGVVRELVKD--PQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEF--PIVHNVIE 239 (422)
T ss_dssp EECHHHHHHHHTS--TTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCC--CCCCCHHH
T ss_pred CCCHHHHHHHHhc--CCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCccccccCCCC--CCCcChhh
Confidence 5999999999962 2577777 7999999999999999999999999 99999999999976 44332 11112222
Q ss_pred h---hhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHH
Q 013839 255 F---LEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLW 331 (435)
Q Consensus 255 ~---~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~ 331 (435)
+ .+..+++++++||||. +++|+|+||+++ +++ +++.+.+.......+++.++|.++..+|.+. ..+
T Consensus 240 ~~~~~~~~~~~i~~~S~SK~-~~~GlriG~~~~---~~~----l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~---~~~ 308 (422)
T 3d6k_A 240 FAQAAGNPNRFWFMSSTSKI-THAGSGVSFFAS---SKE----NIEWYASHANVRGIGPNKLNQLAHAQFFGDV---AGL 308 (422)
T ss_dssp HHHHTTCTTCEEEEEESTTT-SCTTSSCEEEEC---CHH----HHHHHHHHHHHHCSCCCHHHHHHHHHHHCSH---HHH
T ss_pred HhhccCCCCcEEEEcChhhh-cCcccceEEEEe---CHH----HHHHHHHHHHhhcCCCCHHHHHHHHHHHhCc---chH
Confidence 1 2446789999999999 679999999964 788 8888887766666788999999999999872 124
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-CCCCCccccccCcceeEecCC---CHHHHHHHhhhccEEEeCC-----------
Q 013839 332 IDEVKIMADRIQRKRTTLRQNLEKL-GSSLNWEHITNQLGMFCFSGL---TPYQVDRLAKEFHIYMTQD----------- 396 (435)
Q Consensus 332 ~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~g~~~~~~~---~~~~~~~ll~~~gI~i~pg----------- 396 (435)
.+++++.++.++++++.+.+.|.+. +....+.+..+++|+|+|+.+ +.+.+..+++++||.+.|+
T Consensus 309 ~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~l~~~gV~v~~~g~~f~~~~~~~ 388 (422)
T 3d6k_A 309 KAHMLKHAASLAPKFERVLEILDSRLSEYGVAKWTSPTGGYFISVDVVPGTASRVVELAKEAGIALTGAGSSFPLHNDPN 388 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEECCCSBSSCEEEEESTTCHHHHHHHHHHTTEECCCTTTTSGGGCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcCCceEEeCCCcceEEEEECCCCCHHHHHHHHHHCCeEEEcCccccCCCCCCC
Confidence 5678888888999998888888652 100014556778999999866 3566666778899999982
Q ss_pred -C--cEEeccCCCCcHHHHHHHHHHHHHhhh
Q 013839 397 -G--RISMAGVTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 397 -g--Ris~~~~~~e~i~~~~~~l~~~l~~~~ 424 (435)
+ |||++..+++++++++++|++++++..
T Consensus 389 ~~~iRis~~~~~~e~i~~~~~~l~~~l~~~~ 419 (422)
T 3d6k_A 389 NENIRLAPSLPPVAELEVAMDGFATCVLMAA 419 (422)
T ss_dssp SCEEEECCSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 1 999874488999999999999987653
No 47
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=100.00 E-value=2.4e-40 Score=320.47 Aligned_cols=329 Identities=16% Similarity=0.157 Sum_probs=260.4
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCch
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~ 127 (435)
.+++.|+|+.|.+ +. ..++...+.+.+.+..+ ...|++..|.+++|+++++++....+.+..++++. +++||+
T Consensus 27 ~g~~~i~l~~~~~-~~---~~~~~v~~a~~~~~~~~-~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~--~~~g~~ 99 (370)
T 2z61_A 27 EGKKVIHLEIGEP-DF---NTPKPIVDEGIKSLKEG-KTHYTDSRGILELREKISELYKDKYKADIIPDNII--ITGGSS 99 (370)
T ss_dssp TTCCCEECCCCSC-SS---CCCHHHHHHHHHHHHTT-CCSCCCTTCCHHHHHHHHHHHHHHSSCCCCGGGEE--EESSHH
T ss_pred cCCCEEEccCCCC-CC---CCCHHHHHHHHHHHHcC-ccCCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEE--ECCChH
Confidence 4578999999996 32 23344444444444433 45698888999999999999943222223467888 999999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCC
Q 013839 128 GACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNP 207 (435)
Q Consensus 128 ~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NP 207 (435)
+|+.++ +..++.+||+|++++|+|..+...++..|++++.++ +|+++|++.++ ++++++++++|+||
T Consensus 100 ~a~~~~--~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~--------~d~~~l~~~l~---~~~~~v~~~~p~np 166 (370)
T 2z61_A 100 LGLFFA--LSSIIDDGDEVLIQNPCYPCYKNFIRFLGAKPVFCD--------FTVESLEEALS---DKTKAIIINSPSNP 166 (370)
T ss_dssp HHHHHH--HHHHCCTTCEEEEESSCCTHHHHHHHHTTCEEEEEC--------SSHHHHHHHCC---SSEEEEEEESSCTT
T ss_pred HHHHHH--HHHhcCCCCEEEEeCCCchhHHHHHHHcCCEEEEeC--------CCHHHHHHhcc---cCceEEEEcCCCCC
Confidence 999998 666688999999999999999999999999888775 58999999987 57889999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEec
Q 013839 208 TGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCV 287 (435)
Q Consensus 208 tG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~ 287 (435)
||.+++.+ |.++|++||+++|+||+|..+.+++. ..++..+.+..+++++++|+||.+|++|+|+||+++
T Consensus 167 tG~~~~~~----l~~~~~~~~~~li~De~~~~~~~~g~---~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~--- 236 (370)
T 2z61_A 167 LGEVIDRE----IYEFAYENIPYIISDEIYNGLVYEGK---CYSAIEFDENLEKTILINGFSKLYAMTGWRIGYVIS--- 236 (370)
T ss_dssp TCCCCCHH----HHHHHHHHCSEEEEECTTTTCBSSSC---CCCGGGTCTTCSSEEEEEESTTTTTCGGGCCEEEEC---
T ss_pred cCcccCHH----HHHHHHHcCCEEEEEcchhhcccCCC---CcCHHHccCCCCcEEEEecChhccCCccceEEEEEE---
Confidence 99999987 89999999999999999999887531 112323323457899999999999999999999964
Q ss_pred ChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCC-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccc
Q 013839 288 DSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSD-PNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHIT 366 (435)
Q Consensus 288 ~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~-~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 366 (435)
+++ +++.+.........+++.+.|.++..+|+. . .+++++.+++++++++.+.+.|++++ +.+..
T Consensus 237 ~~~----~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~------~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~ 302 (370)
T 2z61_A 237 NDE----IIEAILKLQQNLFISAPTISQYAALKAFEKET------EREINSMIKEFDRRRRLVLKYVKDFG----WEVNN 302 (370)
T ss_dssp CHH----HHHHHHHHHHHHTSSSCHHHHHHHGGGGSHHH------HHHHHHHHHHHHHHHHHHHHHHHHTT----CBCCC
T ss_pred CHH----HHHHHHHHHhhcccCCCHHHHHHHHHHHhccC------HHHHHHHHHHHHHHHHHHHHHHHHcC----CeecC
Confidence 777 777777766555668889999988888864 2 26678888999999999999999875 45667
Q ss_pred cCcceeEecCC--CHHH-HHHHhhhccEEEeCC--------C--cEEeccCCCCcHHHHHHHHHHHHH
Q 013839 367 NQLGMFCFSGL--TPYQ-VDRLAKEFHIYMTQD--------G--RISMAGVTTGNVNYLANAIHEVTR 421 (435)
Q Consensus 367 ~~~g~~~~~~~--~~~~-~~~ll~~~gI~i~pg--------g--Ris~~~~~~e~i~~~~~~l~~~l~ 421 (435)
+++|+|+|+.+ +.+. ...+++++||.+.|| + ||+++. +++++++++++|+++++
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~Ri~~~~-~~~~i~~~~~~l~~~l~ 369 (370)
T 2z61_A 303 PIGAYYVFPNIGEDGREFAYKLLKEKFVALTPGIGFGSKGKNYIRISYAN-SYENIKEGLERIKEFLN 369 (370)
T ss_dssp CCBTTEECCBCSSCHHHHHHHHHHHHCEECEEGGGGCGGGSSBEEEECCS-CHHHHHHHHHHHHHHHC
T ss_pred CCcceEEEEecCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEeC-CHHHHHHHHHHHHHHHh
Confidence 78899999876 4444 466655789999875 2 999985 88999999999988764
No 48
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*
Probab=100.00 E-value=1.1e-40 Score=329.70 Aligned_cols=336 Identities=15% Similarity=0.183 Sum_probs=258.7
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhc---C-CCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEec
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIA---G-SEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQA 123 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t 123 (435)
+++++|+|++|++ +. +.++.+++++.+.+. . .....|++..|.++|++++++++.. ...+.+++|+ ++
T Consensus 54 ~~~~~i~l~~~~~-~~---~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~--~~~~~~~~i~--~t 125 (432)
T 3ei9_A 54 PDAQVISLGIGDT-TE---PIPEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYG--GLGIGDDDVF--VS 125 (432)
T ss_dssp TTCCCEECSSCCC-CS---CCCHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHHHHHHHHHHHT--TTTCCGGGEE--EE
T ss_pred CCCCeEEccCCCC-CC---CCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHc--cCCCCcceEE--EC
Confidence 4568999999996 44 344444444444333 1 2245798889999999999999852 2223477888 99
Q ss_pred CCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCC------------CeeeeeecCCCCCCcChHhHHHHhhc
Q 013839 124 LSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQI------------PERTYHYYDPDSKSLDFAALMDDIKN 191 (435)
Q Consensus 124 ~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~------------~~~~v~~~~~~~~~~d~e~l~~~i~~ 191 (435)
+|+++++.++ .+++.+||+|++++|+|.++...++..|. +++.+++.++.++..|++. .
T Consensus 126 ~G~~~al~~l---~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~- 196 (432)
T 3ei9_A 126 DGAKCDISRL---QVMFGSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPDLST-----V- 196 (432)
T ss_dssp SCHHHHHHHH---HHHHCTTCCEEEEESCCTHHHHHHHHHTCSCCEETTTTEETTCEEEECCGGGTTSCCGGG-----C-
T ss_pred CChHHHHHHH---HHHcCCCCEEEEeCCCCHHHHHHHHHcCCcccccccccccCceEEeccCcccCCcCChhh-----C-
Confidence 9999998764 55678999999999999999998887774 6777777433334445433 1
Q ss_pred CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEeccccc
Q 013839 192 APDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKS 271 (435)
Q Consensus 192 ~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~ 271 (435)
++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. ..++..+.+..+++++++|+||.
T Consensus 197 --~~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~---~~~~~~~~~~~~~~i~~~S~SK~ 271 (432)
T 3ei9_A 197 --GRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDN---PRSIFEIPGAEEVAMETASFSNY 271 (432)
T ss_dssp --CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSC---CSSGGGSTTGGGTEEEEEESHHH
T ss_pred --CCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCC---CCChhhcCCCCCeEEEEecchhc
Confidence 4678888899999999999999999999999999999999999999887632 22333333345679999999999
Q ss_pred ccccCCcccEEEEEecChhHHHHH--------HHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Q 013839 272 MGLYGHRVGCLSILCVDSKQAAAI--------RSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQ 343 (435)
Q Consensus 272 ~g~~G~RvG~~~~~~~~~~~~~~~--------~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~ 343 (435)
+|++|+|+||+++ +++ + ++.+.+.....+.+++.++|.++.+++.+.. .+++++.+++++
T Consensus 272 ~g~~G~r~G~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-----~~~~~~~~~~~~ 339 (432)
T 3ei9_A 272 AGFTGVRLGWTVI---PKK----LLYSDGFPVAKDFNRIICTCFNGASNISQAGALACLTPEG-----LEAMHKVIGFYK 339 (432)
T ss_dssp HCTTTTCCEEEEC---CTT----CBCTTSCBHHHHHHHHHHHSCCCSCHHHHHHHHHHSSHHH-----HHHHHHHHHHHH
T ss_pred cCCcccceEEEEE---ChH----HhhcchHHHHHHHHHHhccccCCCCHHHHHHHHHHHhccc-----HHHHHHHHHHHH
Confidence 9999999999964 666 5 5666665555667789999999988887432 256788899999
Q ss_pred HHHHHHHHHHHhhCCCCCccccccCcceeEecCC---C-HHHHHHHhhhccEEEeCC--------C--cEEeccCCCCcH
Q 013839 344 RKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL---T-PYQVDRLAKEFHIYMTQD--------G--RISMAGVTTGNV 409 (435)
Q Consensus 344 ~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~---~-~~~~~~ll~~~gI~i~pg--------g--Ris~~~~~~e~i 409 (435)
++++.+.+.|+++| +.+..+.+++|+|+.+ + .+++..+++++||.+.|| + ||+++. +++++
T Consensus 340 ~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~iRis~~~-~~e~l 414 (432)
T 3ei9_A 340 ENTNIIIDTFTSLG----YDVYGGKNAPYVWVHFPNQSSWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVSAFG-HRENI 414 (432)
T ss_dssp HHHHHHHHHHHHTT----CCEEECSSSSEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEECCS-CHHHH
T ss_pred HHHHHHHHHHHHCC----ceecCCCcceEEEEECCCCCHHHHHHHHHHHCCEEEeCchHhCCCCCCEEEEEecC-CHHHH
Confidence 99999999999886 4566777889999976 3 345677777789999986 1 999866 88999
Q ss_pred HHHHHHHHHHHHh
Q 013839 410 NYLANAIHEVTRS 422 (435)
Q Consensus 410 ~~~~~~l~~~l~~ 422 (435)
++++++|++--+.
T Consensus 415 ~~~l~rl~~~~~~ 427 (432)
T 3ei9_A 415 LEACRRFKQLYKH 427 (432)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhh
Confidence 9999999876543
No 49
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=100.00 E-value=4.7e-40 Score=325.39 Aligned_cols=348 Identities=16% Similarity=0.207 Sum_probs=270.5
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcCCCC------------CCCCCCcccHHHHHHHHHhHcC--CCCccccC
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEF------------LESISASVSTKMVEESVKLVYG--KDSDVVKE 115 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~Y~~~~g~~~lr~~ia~~l~~--~~~~~~~~ 115 (435)
...|+|+.+. + +.+.+.+.+++........ ..|++..|.++||+++++++.. ....+.++
T Consensus 38 ~~~i~lg~~~----~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~ 111 (435)
T 3piu_A 38 NGIIQMGLAE----N--QLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDP 111 (435)
T ss_dssp TSBEECSSCC----C--CSSHHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCG
T ss_pred CCeEEecccc----c--cccHHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhCCCCCCCH
Confidence 3577888876 2 3445566666665432111 4699999999999999999852 11222346
Q ss_pred CCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHh-hCCCCeeeeeecCCCCCCcChHhHHHHhhcC--
Q 013839 116 GRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWR-DAQIPERTYHYYDPDSKSLDFAALMDDIKNA-- 192 (435)
Q Consensus 116 ~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~-~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~-- 192 (435)
++++ +++||++|+.++ +..++.+||+|+++.|+|.++...+. ..|++++.++..++.++.+|++.|++++.+.
T Consensus 112 ~~v~--~~~gg~~a~~~~--~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~ 187 (435)
T 3piu_A 112 NHLV--LTAGATSANETF--IFCLADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEK 187 (435)
T ss_dssp GGEE--EEEHHHHHHHHH--HHHHCCTTCEEEEEESCCTTHHHHTTTTTCCEEEEEECCGGGTSCCCHHHHHHHHHHHHH
T ss_pred HHEE--EcCChHHHHHHH--HHHhcCCCCeEEECCCccccHHHHHHHhcCCEEEEeeCCCccCCcCCHHHHHHHHHHHHh
Confidence 7888 999999999998 67778899999999999999988887 7899999999854445779999999998741
Q ss_pred -CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhc---------CCeE
Q 013839 193 -PDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLED---------EHLI 262 (435)
Q Consensus 193 -~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~---------~~~~ 262 (435)
..+++++++++||||||.+++.+++++|+++|++||+++|+||+|..+.+++. ...++..+... .+++
T Consensus 188 ~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~--~~~~~~~~~~~~~~d~~~~~~~~~ 265 (435)
T 3piu_A 188 RNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSP--SFISVMEVLKDRNCDENSEVWQRV 265 (435)
T ss_dssp TTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSS--CCCCHHHHHHC-------CGGGGE
T ss_pred cCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC--CCcCHHHhccccccccccCCCCCE
Confidence 23689999999999999999999999999999999999999999999777642 22233233222 5788
Q ss_pred EEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q 013839 263 GCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRI 342 (435)
Q Consensus 263 i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~ 342 (435)
++++|+||.+|++|+|+||++ +.+++ +.+.+++... +.+.+.+.|.++..++.+..+ ..+++++.++++
T Consensus 266 i~i~s~sK~~g~~G~r~G~~~--~~~~~----~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~ 334 (435)
T 3piu_A 266 HVVYSLSKDLGLPGFRVGAIY--SNDDM----VVAAATKMSS--FGLVSSQTQHLLSAMLSDKKL---TKNYIAENHKRL 334 (435)
T ss_dssp EEEEESSSSSCCGGGCEEEEE--ESCHH----HHHHHHHHGG--GSCCCHHHHHHHHHHHHCHHH---HHHHHHHHHHHH
T ss_pred EEEEeeecccCCCceeEEEEE--eCCHH----HHHHHHHHhh--cCCCCHHHHHHHHHHhcChHH---HHHHHHHHHHHH
Confidence 999999999999999999996 43566 6666665433 346778899999888876542 134667888999
Q ss_pred HHHHHHHHHHHHhhCCCCCccccccCcceeEecCCCH-----------HHHHHHhhhccEEEeCC--------C--cEEe
Q 013839 343 QRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLTP-----------YQVDRLAKEFHIYMTQD--------G--RISM 401 (435)
Q Consensus 343 ~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~-----------~~~~~ll~~~gI~i~pg--------g--Ris~ 401 (435)
+++++.+.+.|++++ +.+..+++|+|+|+.+.. +++..+++++||.+.|| + ||++
T Consensus 335 ~~~~~~l~~~L~~~g----~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~ 410 (435)
T 3piu_A 335 KQRQKKLVSGLQKSG----ISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCF 410 (435)
T ss_dssp HHHHHHHHHHHHTTT----CEECCCCSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSTTEEEEEC
T ss_pred HHHHHHHHHHHHhcC----CcccCCCeeEEEEEEcccccccCCchhHHHHHHHHHHHCCEEEeCCcccCCCCCCEEEEEe
Confidence 999999999999886 567788888999986631 34566767679999985 1 9999
Q ss_pred ccCCCCcHHHHHHHHHHHHHhhh
Q 013839 402 AGVTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 402 ~~~~~e~i~~~~~~l~~~l~~~~ 424 (435)
+..+++++++++++|++++++..
T Consensus 411 ~~~~~e~i~~~l~~l~~~l~~~~ 433 (435)
T 3piu_A 411 ANLPERTLDLAMQRLKAFVGEYY 433 (435)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHC
T ss_pred eCCCHHHHHHHHHHHHHHHHHHh
Confidence 76588999999999999987654
No 50
>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*
Probab=100.00 E-value=3.3e-40 Score=320.75 Aligned_cols=335 Identities=17% Similarity=0.144 Sum_probs=262.6
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhH
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGA 129 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a 129 (435)
++.|+|+.|.+ +. +.++.+.+.+.+.+.. ...|++..|.+++|+++++++ +.+ ++++. +++||++|
T Consensus 25 ~~~i~l~~~~~-~~---~~~~~v~~a~~~~~~~--~~~y~~~~~~~~l~~~la~~~-~~~-----~~~v~--~~~g~~~a 90 (381)
T 1v2d_A 25 LGAVNLGQGFP-SN---PPPPFLLEAVRRALGR--QDQYAPPAGLPALREALAEEF-AVE-----PESVV--VTSGATEA 90 (381)
T ss_dssp HTCEECCCCSC-SS---CCCHHHHHHHHHHTTT--SCSCCCTTCCHHHHHHHHHHH-TSC-----GGGEE--EESSHHHH
T ss_pred CCeEEecCCCC-CC---CCCHHHHHHHHHHHHH--hcCCCCCCCCHHHHHHHHHhc-CCC-----hhhEE--EcCChHHH
Confidence 56899999986 33 3333344444444433 456988889999999999997 332 45777 99999999
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecC-CCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCC
Q 013839 130 CRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYD-PDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPT 208 (435)
Q Consensus 130 ~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~-~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPt 208 (435)
+.++ +..++.+||+|++++|+|..+...++..|++++.++... ++++.+|+++|++++. ++++++++++|+|||
T Consensus 91 ~~~~--~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~---~~~~~v~~~~~~npt 165 (381)
T 1v2d_A 91 LYVL--LQSLVGPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALT---PRTRALLLNTPMNPT 165 (381)
T ss_dssp HHHH--HHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHTTCC---TTEEEEEEESSCTTT
T ss_pred HHHH--HHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEEeCCCCCccCCcCHHHHHHhcC---cCCEEEEECCCCCCC
Confidence 9998 666678999999999999999999999999999998730 2457899999999886 578999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecC
Q 013839 209 GVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVD 288 (435)
Q Consensus 209 G~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~ 288 (435)
|.+++.+++++|+++|++||+++|+||+|.++.++.. ..++..+ ..++++++.|+||.+|++|+|+||+++ +
T Consensus 166 G~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~g~~---~~~~~~~--~~~~~~~~~s~sK~~~~~G~r~G~~~~---~ 237 (381)
T 1v2d_A 166 GLVFGERELEAIARLARAHDLFLISDEVYDELYYGER---PRRLREF--APERTFTVGSAGKRLEATGYRVGWIVG---P 237 (381)
T ss_dssp CCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSC---CCCHHHH--CTTTEEEEEEHHHHTTCGGGCCEEEEC---C
T ss_pred CCccCHHHHHHHHHHHHHcCCEEEEEcCccccccCCC---CCCHHHh--cCCCEEEEeechhhcCCcccceEEEEe---C
Confidence 9999999999999999999999999999998876321 1122222 346899999999999999999999964 7
Q ss_pred hhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccC
Q 013839 289 SKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQ 368 (435)
Q Consensus 289 ~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 368 (435)
++ +++.+.........+++.+.|.++..+|.... +.+++++.+++++++++++.+.|++.+ +.+..++
T Consensus 238 ~~----~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~----~~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~ 305 (381)
T 1v2d_A 238 KE----FMPRLAGMRQWTSFSAPTPLQAGVAEALKLAR----REGFYEALREGYRRRRDLLAGGLRAMG----LRVYVPE 305 (381)
T ss_dssp TT----THHHHHHHHHHHTSSCCHHHHHHHHHHHHHHH----HTTHHHHHHHHHHHHHHHHHHHHHHTT----CCEECCS
T ss_pred HH----HHHHHHHHHhhcccCCCcHHHHHHHHHHhCcc----cHHHHHHHHHHHHHHHHHHHHHHHHCC----CEecCCC
Confidence 77 77777665555566788899988888886431 125677888999999999999998876 4566778
Q ss_pred cceeEecCCCH-HHHHHHhhhccEEEeCC----------C--cEEeccCCCCcHHHHHHHHHHHHHhhhh
Q 013839 369 LGMFCFSGLTP-YQVDRLAKEFHIYMTQD----------G--RISMAGVTTGNVNYLANAIHEVTRSEQE 425 (435)
Q Consensus 369 ~g~~~~~~~~~-~~~~~ll~~~gI~i~pg----------g--Ris~~~~~~e~i~~~~~~l~~~l~~~~~ 425 (435)
+|+|+|+.+.. + +..+++++||.+.|| + ||+++. +++++++++++|++++++..+
T Consensus 306 ~~~~~~~~~~~~~-~~~~l~~~gi~v~~g~~~~~~~~~~~~iRi~~~~-~~~~i~~~~~~l~~~l~~~r~ 373 (381)
T 1v2d_A 306 GTYFLMAELPGWD-AFRLVEEARVALIPASAFYLEDPPKDLFRFAFCK-TEEELHLALERLGRVVNSPRE 373 (381)
T ss_dssp BSSEEEEECTTCC-HHHHHHHTCEECEEGGGGCSSSCCTTEEEEECCS-CHHHHHHHHHHHHHHC-----
T ss_pred cceEEEEecChHh-HHHHHHhCCEEEecchHhCCCCCCCCEEEEEeCC-CHHHHHHHHHHHHHHHhhccc
Confidence 88999986632 3 666777899999874 2 999987 889999999999998876543
No 51
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=100.00 E-value=2.3e-40 Score=326.35 Aligned_cols=359 Identities=14% Similarity=0.031 Sum_probs=269.1
Q ss_pred hhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHH--HHhcCC-CCCCC-CCCcccHHHHHHHHHhHcCCCCccc
Q 013839 38 NGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAE--AKIAGS-EFLES-ISASVSTKMVEESVKLVYGKDSDVV 113 (435)
Q Consensus 38 ~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~Y-~~~~g~~~lr~~ia~~l~~~~~~~~ 113 (435)
+....++. .....|||+.|.| +...++.++...+.+. ..+..+ ...+| ++..|.++||+++++++ +.
T Consensus 15 ~~~~~~~~--~~~~~i~l~~g~p-~~~~~~~~~~v~~a~~~~~~~~~~~~~~~Yp~~~~g~~~lr~~ia~~~-~~----- 85 (423)
T 3ez1_A 15 RQAYEAFK--ARGLNLNMQRGQP-ADADFDLSNGLLTVLGAEDVRMDGLDLRNYPGGVAGLPSARALFAGYL-DV----- 85 (423)
T ss_dssp HHHHHHHH--HHTCCEESCCCCC-CHHHHHTTGGGGGSCCGGGCEETTEETTSSCSCTTCCHHHHHHHHHHT-TS-----
T ss_pred HHHHHHhh--cCCceEecCCCCC-ChHhCCCcHHHHHHHhhhHHhhcchhhhCCCCCCCChHHHHHHHHHHh-CC-----
Confidence 34444443 2357899999997 3111123323333221 222222 24679 88899999999999998 32
Q ss_pred cCCCeeeEecCCchhHHH--HHHHHHHHhC--C---------CCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCc
Q 013839 114 KEGRSAGVQALSGTGACR--LFAEFQRRFH--P---------ESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSL 180 (435)
Q Consensus 114 ~~~~v~~~~t~gg~~a~~--~~~~~~~~~~--~---------gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~ 180 (435)
++++|+ +|+|+++++. ++ +..++. + ||+|+++.|+|.++...++..|++++.++.. ++ ++
T Consensus 86 ~~~~i~--~t~G~~~al~~~~~--~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~-~~--g~ 158 (423)
T 3ez1_A 86 KAENVL--VWNNSSLELQGLVL--TFALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFLLLQTLGFELLTVDMQ-SD--GP 158 (423)
T ss_dssp CGGGEE--ECSSCHHHHHHHHH--HHHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHHHHHHHTCEEEEEEEE-TT--EE
T ss_pred ChhhEE--EeCCcHHHHHHHHH--HHHHhccCCCccccccCCCCEEEEcCCCcHHHHHHHHHcCCEEEeccCC-CC--CC
Confidence 256888 9999999997 66 555666 7 5999999999999999999999999999984 33 69
Q ss_pred ChHhHHHHhhcCCCCcEEEE-eCCCCCCCCCCCCHHHHHHHHHHH-HhcCceeeeeccCCCccCCC-Ccc---cHHHHHH
Q 013839 181 DFAALMDDIKNAPDSSFFLL-HPSAHNPTGVDPTEEQWREISYQF-KVKGHFPFFDMAYQGFASGD-LDK---DAQAIRI 254 (435)
Q Consensus 181 d~e~l~~~i~~~~~~~~~v~-~~~p~NPtG~~~~~~~l~~i~~~~-~~~~~~vi~Deay~~~~~~~-~~~---~~~~~~~ 254 (435)
|++.|++++.+. +++++++ +++||||||.+++.+++++|+++| ++||+++|+||+|..+.+.+ ... +...+..
T Consensus 159 d~~~l~~~l~~~-~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~ 237 (423)
T 3ez1_A 159 DVDAVERLAGTD-PSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLAR 237 (423)
T ss_dssp CHHHHHHHHHSC-TTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHH
T ss_pred CHHHHHHHHhhC-CCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhh
Confidence 999999999532 5677775 579999999999999999999999 99999999999998655442 111 2222222
Q ss_pred hhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCC--hhhHHHHH
Q 013839 255 FLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSD--PNLKSLWI 332 (435)
Q Consensus 255 ~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~--~~l~~~~~ 332 (435)
..+..+++++++||||. +++|+|+||+++ +++ +++.+.........+++.+.|.++..++.+ .. +.
T Consensus 238 ~~~~~~~~i~~~S~sK~-~~~G~r~G~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~----~~ 305 (423)
T 3ez1_A 238 DAGYPDRAFVFASTSKI-TFAGAGLGFVAS---SED----NIRWLSKYLGAQSIGPNKVEQARHVKFLTEYPGG----LE 305 (423)
T ss_dssp HHTCTTSEEEEEESTTT-SCSSSSCEEEEE---CHH----HHHHHHHHHHHSCSCCCHHHHHHHHHHHHHSTTH----HH
T ss_pred ccCCCCeEEEEeCchhh-ccCCcceEEEEe---CHH----HHHHHHHHHhhhccCCCHHHHHHHHHHHHhccch----HH
Confidence 23456889999999999 569999999975 888 888888877777788999999999998875 33 44
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh-hCCCC-CccccccCcceeEecCC---CHHHHHHHhhhccEEEeC-C----------
Q 013839 333 DEVKIMADRIQRKRTTLRQNLEK-LGSSL-NWEHITNQLGMFCFSGL---TPYQVDRLAKEFHIYMTQ-D---------- 396 (435)
Q Consensus 333 ~~~~~~~~~~~~~~~~l~~~l~~-~~~~~-~~~~~~~~~g~~~~~~~---~~~~~~~ll~~~gI~i~p-g---------- 396 (435)
+++++.++.++++++.+.+.|.+ ++.-. .+.+..+++|+|+|+.+ +.+.+.++++++||.+.| |
T Consensus 306 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~l~~~gv~v~~~g~~~~~~~~~~ 385 (423)
T 3ez1_A 306 GLMRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLPKGGYFISLDTAEPVADRVVKLAEAAGVSLTPAGATYPAGQDPH 385 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSEEECCCSBSSCEEEEESSSCHHHHHHHHHHTTEECCCTTTTSSTTCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcCCCceEEeCCCccEEEEEECCCCcHHHHHHHHHHCCcEEecCcccccCCCCCC
Confidence 66677777777777777777754 22101 24566788999999865 456676667889999998 2
Q ss_pred -C--cEEeccCCCCcHHHHHHHHHHHHHhhhh
Q 013839 397 -G--RISMAGVTTGNVNYLANAIHEVTRSEQE 425 (435)
Q Consensus 397 -g--Ris~~~~~~e~i~~~~~~l~~~l~~~~~ 425 (435)
+ ||+++..+++++++++++|++++++...
T Consensus 386 ~~~iRis~~~~~~~~i~~~~~~l~~~l~~~~~ 417 (423)
T 3ez1_A 386 NRNLRLAPTRPPVEEVRTAMQVVAACIRLATE 417 (423)
T ss_dssp SCEEEECCSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 1 9999755889999999999999987653
No 52
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=100.00 E-value=4.6e-40 Score=320.63 Aligned_cols=345 Identities=12% Similarity=0.112 Sum_probs=268.8
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCch
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~ 127 (435)
.++++|+|+.|.+ +. +.++.+.+.+...+... ...|++. ..++++++++++....+.+..+++|. +++|++
T Consensus 25 ~g~~~i~~~~~~~-~~---~~~~~v~~a~~~~~~~~-~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~i~--~~~g~~ 95 (391)
T 3dzz_A 25 LKEKELPMWIAEM-DF---KIAPEIMASMEEKLKVA-AFGYESV--PAEYYKAVADWEEIEHRARPKEDWCV--FASGVV 95 (391)
T ss_dssp CCTTCEECCSSCC-SS---CCCHHHHHHHHHHHTTC-CCCCBCC--CHHHHHHHHHHHHHHHSCCCCGGGEE--EESCHH
T ss_pred cCCCceeccccCC-CC---CCCHHHHHHHHHHHhcC-cCCCCCC--CHHHHHHHHHHHHHHhCCCCCHHHEE--ECCCHH
Confidence 4568999999985 33 44444545444555443 5567765 68999999999843322223367888 999999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeec-CCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCC
Q 013839 128 GACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYY-DPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHN 206 (435)
Q Consensus 128 ~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~-~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~N 206 (435)
+|+.++ +..++.+||+|+++.|+|.++...++..|++++.++.. ++.++.+|+++|++++++ ++++++++++|+|
T Consensus 96 ~a~~~~--~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~--~~~~~v~i~~p~n 171 (391)
T 3dzz_A 96 PAISAM--VRQFTSPGDQILVQEPVYNMFYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLAT--PSVRMMVFCNPHN 171 (391)
T ss_dssp HHHHHH--HHHHSCTTCEEEECSSCCHHHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTS--TTEEEEEEESSBT
T ss_pred HHHHHH--HHHhCCCCCeEEECCCCcHHHHHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhc--cCceEEEEECCCC
Confidence 999988 66678899999999999999999999999999999873 133356999999999963 4688999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhh-hcCCeEEEEecccccccccCCcccEEEEE
Q 013839 207 PTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFL-EDEHLIGCAQSYAKSMGLYGHRVGCLSIL 285 (435)
Q Consensus 207 PtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~s~SK~~g~~G~RvG~~~~~ 285 (435)
|||.+++.+++++|+++|++||+++|+||+|.++.+.+. ...++..+. ...++++++.|+||.+|++|+|+||++
T Consensus 172 ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~~~~d~~i~~~s~sK~~g~~G~r~G~~~-- 247 (391)
T 3dzz_A 172 PIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDE--DITPAFTVDWDAKNWVVSLISPSKTFNLAALHAACAI-- 247 (391)
T ss_dssp TTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSC--CCCCGGGSCTTTGGGEEEEECSHHHHTCTTTCCEEEE--
T ss_pred CCCcccCHHHHHHHHHHHHHCCCEEEEecccccccCCCC--CceehhhcCccccCcEEEEEeChhhccccchhheEEE--
Confidence 999999999999999999999999999999998887641 122333322 124689999999999999999999996
Q ss_pred ecChhHHHHHHHHHHHHhh-ccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hCCCCCcc
Q 013839 286 CVDSKQAAAIRSQIQQIAR-AMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEK-LGSSLNWE 363 (435)
Q Consensus 286 ~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~ 363 (435)
+++++ +++.+..... ....+++.+++.++..++.... +++++.+++++++++.+.+.|++ ++ ++.
T Consensus 248 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~------~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~ 314 (391)
T 3dzz_A 248 IPNPD----LRARAEESFFLAGIGEPNLLAIPAAIAAYEEGH------DWLRELKQVLRDNFAYAREFLAKEVP---EVK 314 (391)
T ss_dssp CCSHH----HHHHHHHHHHHHTCSSCCTTHHHHHHHHHHHCH------HHHHHHHHHHHHHHHHHHHHHHHHCT---TSE
T ss_pred ECCHH----HHHHHHHHHHhhccCCCCHHHHHHHHHHHhccH------HHHHHHHHHHHHHHHHHHHHHHhhCC---CcE
Confidence 43377 7777766543 3345788888888888886532 56788889999999999999988 43 256
Q ss_pred ccccCcceeEecCC-----CHHHH-HHHhhhccEEEeCCC----------cEEeccCCCCcHHHHHHHHHHHHHhh
Q 013839 364 HITNQLGMFCFSGL-----TPYQV-DRLAKEFHIYMTQDG----------RISMAGVTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 364 ~~~~~~g~~~~~~~-----~~~~~-~~ll~~~gI~i~pgg----------Ris~~~~~~e~i~~~~~~l~~~l~~~ 423 (435)
+..++++++.|+.+ +.+.+ ..+++++||.+.||. |++++. +++++++++++|+++++++
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~-~~~~i~~~l~~l~~~l~~~ 389 (391)
T 3dzz_A 315 VLDSNASYLAWVDISALGMNAEDFCKYLREKTGLIISAGNGYRGNGHEFVRINLAC-PKELVIDGMQRLKQGVLNL 389 (391)
T ss_dssp ECCCCBSSEEEEECGGGCSCHHHHHHHHHHHHCEECEESGGGCTTGGGEEEEECCS-CHHHHHHHHHHHHHHHHTC
T ss_pred EeccCceEEEEEehhhcCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC-CHHHHHHHHHHHHHHHHHh
Confidence 77888999988743 44444 555567999999862 999985 8899999999999998764
No 53
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=100.00 E-value=3.3e-40 Score=320.74 Aligned_cols=341 Identities=9% Similarity=0.043 Sum_probs=265.2
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCch
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~ 127 (435)
.++++|+|+.|.+ +. +.++.+.+.+...+..+ ...|++. ..++++++++++....+.+..++++. +++||+
T Consensus 22 ~~~~~i~l~~~~~-~~---~~~~~v~~a~~~~~~~~-~~~y~~~--~~~~~~~l~~~l~~~~g~~~~~~~v~--~~~g~~ 92 (383)
T 3kax_A 22 KNEELIHAWIADM-DF---EVPQPIQTALKKRIEHP-IFGYTLP--PENIGDIICNWTKKQYNWDIQKEWIV--FSAGIV 92 (383)
T ss_dssp SSSCCEECCCSSC-SS---CCCHHHHHHHHHHHHSC-CCCCCCC--CTTHHHHHHHHHHHHHCCCCCGGGEE--EESCHH
T ss_pred CCCCeeecccccC-CC---CCCHHHHHHHHHHHhcC-CCCCCCC--CHHHHHHHHHHHHHHhCCCCChhhEE--EcCCHH
Confidence 3578999999984 32 44444545444555443 4557665 57899999998843222123367888 999999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCC-CCCcChHhHHHHhhcCCCCcEEEEeCCCCC
Q 013839 128 GACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPD-SKSLDFAALMDDIKNAPDSSFFLLHPSAHN 206 (435)
Q Consensus 128 ~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~-~~~~d~e~l~~~i~~~~~~~~~v~~~~p~N 206 (435)
+|+.++ +..++.+||+|+++.|+|.++...++..|++++.++...++ ++.+|+++|++++. ++++++++++|+|
T Consensus 93 ~a~~~~--~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~---~~~~~v~i~~p~n 167 (383)
T 3kax_A 93 PALSTS--IQAFTKENESVLVQPPIYPPFFEMVTTNNRQLCVSPLQKQNDTYAIDFEHLEKQFQ---QGVKLMLLCSPHN 167 (383)
T ss_dssp HHHHHH--HHHHCCTTCEEEECSSCCHHHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHT---TTCCEEEEESSBT
T ss_pred HHHHHH--HHHhCCCCCEEEEcCCCcHHHHHHHHHcCCEEEeccceecCCcEEEcHHHHHHHhC---cCCeEEEEeCCCC
Confidence 999988 66678899999999999999999999999999999874222 35699999999995 6788899999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhh-hcCCeEEEEecccccccccCCcccEEEEE
Q 013839 207 PTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFL-EDEHLIGCAQSYAKSMGLYGHRVGCLSIL 285 (435)
Q Consensus 207 PtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~s~SK~~g~~G~RvG~~~~~ 285 (435)
|||.+++.+++++|+++|++||+++|+||+|.++.+++. ...++..+. +..+++++++|+||.+|++|+|+||++
T Consensus 168 ptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~-- 243 (383)
T 3kax_A 168 PIGRVWKKEELTKLGSLCTKYNVIVVADEIHSDIIYADH--THTPFASLSEELAARTITCMAPSKTFNIAGLQASIII-- 243 (383)
T ss_dssp TTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC--CCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEE--
T ss_pred CCCcCcCHHHHHHHHHHHHHCCCEEEEEccccccccCCC--CceeHhhcCccccCcEEEEEEChhhccCcchhheEEE--
Confidence 999999999999999999999999999999999887642 112222222 113678999999999999999999996
Q ss_pred ecChhHHHHHHHHHHHHhhc-cccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCCcc
Q 013839 286 CVDSKQAAAIRSQIQQIARA-MYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKL-GSSLNWE 363 (435)
Q Consensus 286 ~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~ 363 (435)
+++++ +++.+...... .+.+++.+++.++..++.... +++++.+++++++++.+.+.|++. + ++.
T Consensus 244 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~------~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~ 310 (383)
T 3kax_A 244 IPNEK----LRQAFTSIQYRQGFHGLNIFAYTAMQSAYTECN------DWLNEIRFYIEDNAKFACEYIKDHIP---TLS 310 (383)
T ss_dssp CCCHH----HHHHHHHHHHHTTCCCCCHHHHHHHHHHTTTCH------HHHHHHHHHHHHHHHHHHHHHHHHCT---TCE
T ss_pred eCCHH----HHHHHHHHHhhcccCCCCHHHHHHHHHHHHhhH------HHHHHHHHHHHHHHHHHHHHHHhhCC---Cce
Confidence 43577 77777665543 345788999999989888643 667888999999999999999884 3 256
Q ss_pred ccccCcceeEecCC-----CHHHH-HHHhhhccEEEeCC--------C--cEEeccCCCCcHHHHHHHHHHHH
Q 013839 364 HITNQLGMFCFSGL-----TPYQV-DRLAKEFHIYMTQD--------G--RISMAGVTTGNVNYLANAIHEVT 420 (435)
Q Consensus 364 ~~~~~~g~~~~~~~-----~~~~~-~~ll~~~gI~i~pg--------g--Ris~~~~~~e~i~~~~~~l~~~l 420 (435)
+..++++++.|+.+ +.+.+ ..+++++||.+.|| + |++++. +++++++++++|++++
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~-~~~~i~~~l~~l~~~l 382 (383)
T 3kax_A 311 VMKPEGSFLLWIDCSALNLSQDERTKLLEEKGKIIVEPGEKYGLGGEEHIGINIGC-PRSVLEEILNRLRHTF 382 (383)
T ss_dssp ECCCSBSSEEEEECGGGCCCHHHHHHHHHHTSCEECEESGGGCTTCTTEEEEECSS-CHHHHHHHHHHHHHHH
T ss_pred EecCCceEEEEEEccccCCCHHHHHHHHHhhCCEEeECchhhcCCCCCeEEEEEcC-CHHHHHHHHHHHHHHh
Confidence 77889999998744 44444 55655789999986 1 999986 8899999999998875
No 54
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*
Probab=100.00 E-value=1.7e-39 Score=320.70 Aligned_cols=346 Identities=16% Similarity=0.228 Sum_probs=263.3
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcC-----------CCCCCCCCCcccHHHHHHHHHhHcCCCCcc--ccCC
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAG-----------SEFLESISASVSTKMVEESVKLVYGKDSDV--VKEG 116 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~--~~~~ 116 (435)
...|+|+.++ + +.+.+.+.+++..... .....|+++.|.+++|+++++++....+.. +.++
T Consensus 36 ~~~i~l~~~~----~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~ 109 (428)
T 1iay_A 36 NGVIQMGLAE----N--QLCLDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPE 109 (428)
T ss_dssp TSBEECSSCC----C--CSSHHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTT
T ss_pred Cceeeecccc----c--hhhHHHHHHHHHhccccccccccccccHhhcCCCCCCCcHHHHHHHHHHHHHhcCCCCCCChh
Confidence 4688998776 2 2223355555553210 013569888899999999999984221111 3367
Q ss_pred CeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHh-hCCCCeeeeeecCCCCCCcChHhHHHHhhc---C
Q 013839 117 RSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWR-DAQIPERTYHYYDPDSKSLDFAALMDDIKN---A 192 (435)
Q Consensus 117 ~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~-~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~---~ 192 (435)
++. +++|+++++.++ +..++.+||+|+++.|+|..+...+. ..|++++.++...++++++|++++++++++ .
T Consensus 110 ~i~--~~~G~~~ai~~~--~~~~~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~ 185 (428)
T 1iay_A 110 RVV--MAGGATGANETI--IFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKS 185 (428)
T ss_dssp SCE--EEEHHHHHHHHH--HHHHCCTTCEEEEESSCCTTHHHHTTTTTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHT
T ss_pred hEE--EccChHHHHHHH--HHHhCCCCCeEEEccCCCcchHHHHHHhcCCEEEEeecCCccCCcCCHHHHHHHHHHHHhc
Confidence 888 999999999888 66678899999999999999877554 679999999874334678999999998864 2
Q ss_pred CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhc-------CCeEEEE
Q 013839 193 PDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLED-------EHLIGCA 265 (435)
Q Consensus 193 ~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~-------~~~~i~~ 265 (435)
.++++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. ...++..+... .++++++
T Consensus 186 ~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~viv~ 263 (428)
T 1iay_A 186 NIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTP--QFVSIAEILDEQEMTYCNKDLVHIV 263 (428)
T ss_dssp TCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSS--CCCCHHHHHTSGGGTTSCTTSEEEE
T ss_pred CCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccccccCCC--CccCHHHhccccccccCCCCcEEEE
Confidence 23688999999999999999999999999999999999999999999877531 11122223222 4789999
Q ss_pred ecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHH
Q 013839 266 QSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRK 345 (435)
Q Consensus 266 ~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~ 345 (435)
.|+||.+|++|+|+||++ +.+++ +++.+++... +.+.+.++|.++..+|.+..+ +.+++++.+++++++
T Consensus 264 ~s~sK~~g~~Glr~G~~~--~~~~~----~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~~~ 332 (428)
T 1iay_A 264 YSLSKDMGLPGFRVGIIY--SFNDD----VVNCARKMSS--FGLVSTQTQYFLAAMLSDEKF---VDNFLRESAMRLGKR 332 (428)
T ss_dssp EESTTTSSCGGGCEEEEE--ESCHH----HHHHHHHHHT--TSCCCHHHHHHHHHHTTCHHH---HHHHHHHHHHHHHHH
T ss_pred ecchhhcCCCCceEEEEE--eCCHH----HHHHHHHHHh--cccCCHHHHHHHHHHhcChHH---HHHHHHHHHHHHHHH
Confidence 999999999999999996 43567 7777766433 356888999999999987531 224677888999999
Q ss_pred HHHHHHHHHhhCCCCCccccccCcceeEecCCC----------H-HHHHHHhhhccEEEeCC--------C--cEEeccC
Q 013839 346 RTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLT----------P-YQVDRLAKEFHIYMTQD--------G--RISMAGV 404 (435)
Q Consensus 346 ~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~----------~-~~~~~ll~~~gI~i~pg--------g--Ris~~~~ 404 (435)
++.+.+.|++++ +.+.++++|+|+|+.+. . ++.+.+++++||.+.++ + ||+++..
T Consensus 333 ~~~l~~~L~~~g----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~~~~~~iRis~~~~ 408 (428)
T 1iay_A 333 HKHFTNGLEVVG----IKCLKNNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQEPGWFRVCFANM 408 (428)
T ss_dssp HHHHHHHHHHTT----CCBCCCSSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSSSSEEEEECSSS
T ss_pred HHHHHHHHHhcC----CcccCCCeeEEEEEechhhcCCCchhHHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEEecC
Confidence 999999999886 45666778999998662 1 23466655569999875 2 9999745
Q ss_pred CCCcHHHHHHHHHHHHHh
Q 013839 405 TTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 405 ~~e~i~~~~~~l~~~l~~ 422 (435)
+++++++++++|++++++
T Consensus 409 ~~e~i~~~~~~l~~~l~~ 426 (428)
T 1iay_A 409 DDGTVDIALARIRRFVGV 426 (428)
T ss_dssp CHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHhc
Confidence 889999999999998864
No 55
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=100.00 E-value=1.7e-39 Score=317.46 Aligned_cols=341 Identities=15% Similarity=0.124 Sum_probs=262.5
Q ss_pred CCCeeeeecceecCCCCCcccchHHHHHHH-HhcCC--CCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCC
Q 013839 49 SPYKINLGVGAYRDDKGRPVVLQCVREAEA-KIAGS--EFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALS 125 (435)
Q Consensus 49 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~g 125 (435)
+++.|+|+.|.| +.. ..+.+.+.+++. .+... ....|++..|..++|+++++++ +. ++++|. +++|
T Consensus 31 ~~~~i~l~~g~~-~~~--~~~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~-g~-----~~~~v~--~~~g 99 (397)
T 2zyj_A 31 RPGILSFAGGLP-APE--LFPKEEAAEAAARILREKGEVALQYSPTEGYAPLRAFVAEWI-GV-----RPEEVL--ITTG 99 (397)
T ss_dssp STTCEEESSCCC-CGG--GCCHHHHHHHHHHHHHHHHHHHTSCCCTTCCHHHHHHHHHHH-TS-----CGGGEE--EESH
T ss_pred CCCceecCCCCC-Cch--hCCHHHHHHHHHHHHHhcchhhhCCCCCCCCHHHHHHHHHHh-CC-----ChhhEE--Eecc
Confidence 467999999986 322 223334443333 33211 1356888889999999999999 32 256888 9999
Q ss_pred chhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEE-EeCCC
Q 013839 126 GTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFL-LHPSA 204 (435)
Q Consensus 126 g~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v-~~~~p 204 (435)
+++++.++ +.+++.+||+|+++.|+|.++...++..|++++.++.. ++ ++|+++|++++++ .+++++ ++++|
T Consensus 100 ~~~al~~~--~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~-~~--~~d~~~l~~~l~~--~~~~~v~~~~~~ 172 (397)
T 2zyj_A 100 SQQALDLV--GKVFLDEGSPVLLEAPSYMGAIQAFRLQGPRFLTVPAG-EE--GPDLDALEEVLKR--ERPRFLYLIPSF 172 (397)
T ss_dssp HHHHHHHH--HHHHCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEE-TT--EECHHHHHHHHHH--CCCSCEEECCBS
T ss_pred HHHHHHHH--HHHhCCCCCEEEEeCCCcHHHHHHHHHcCCEEEecCcC-CC--CCCHHHHHHHHhh--cCCeEEEECCCC
Confidence 99999988 66667899999999999999999999999999999883 33 5999999999974 245665 68999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhc--CCeEEEEecccccccccCCcccEE
Q 013839 205 HNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLED--EHLIGCAQSYAKSMGLYGHRVGCL 282 (435)
Q Consensus 205 ~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~s~SK~~g~~G~RvG~~ 282 (435)
|||||.+++.+++++|+++|++||+++|+||+|..+.+++. ...++..+... .+++++++|+||.++ +|+|+||+
T Consensus 173 ~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~G~~ 249 (397)
T 2zyj_A 173 QNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEA--RLPSLFELAREAGYPGVIYLGSFSKVLS-PGLRVAFA 249 (397)
T ss_dssp CTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSC--CCCCHHHHHHHHTCCCEEEEEESTTTTC-GGGCCEEE
T ss_pred cCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCC--CCCchhhhCcccCCCeEEEEeccccccc-ccceeEEE
Confidence 99999999999999999999999999999999999887532 11223233211 157899999999999 99999999
Q ss_pred EEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCc
Q 013839 283 SILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNW 362 (435)
Q Consensus 283 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 362 (435)
++ +++ +++.+.........+.+.++|.++..+|.... + +++++.+++++++++.+.+.|++.. +.++
T Consensus 250 ~~---~~~----~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~----~-~~~~~~~~~~~~~~~~l~~~L~~~~-~~g~ 316 (397)
T 2zyj_A 250 VA---HPE----ALQKLVQAKQGADLHTPMLNQMLVHELLKEGF----S-ERLERVRRVYREKAQAMLHALDREV-PKEV 316 (397)
T ss_dssp EC---CHH----HHHHHHHHHHHHHSSCCHHHHHHHHHHHTTTH----H-HHHHHHHHHHHHHHHHHHHHHHHHS-CTTS
T ss_pred ec---CHH----HHHHHHHHHHhhcCCCCHHHHHHHHHHHHhCC----H-HHHHHHHHHHHHHHHHHHHHHHHHC-CCCe
Confidence 64 777 77777765555556678999999999998653 3 5678888999999999999998751 1124
Q ss_pred cccccCcceeEecCC----CHHHH-HHHhhhccEEEeCC----------C--cEEeccCCCCcHHHHHHHHHHHHHhhh
Q 013839 363 EHITNQLGMFCFSGL----TPYQV-DRLAKEFHIYMTQD----------G--RISMAGVTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 363 ~~~~~~~g~~~~~~~----~~~~~-~~ll~~~gI~i~pg----------g--Ris~~~~~~e~i~~~~~~l~~~l~~~~ 424 (435)
.+..+.+|+|+|+.+ +.+.+ +.++ ++||.+.|| + ||+++..+++++++++++|++++++..
T Consensus 317 ~~~~~~~g~~~~~~~~~~~~~~~~~~~l~-~~gi~v~~g~~f~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~~~ 394 (397)
T 2zyj_A 317 RYTRPKGGMFVWMELPKGLSAEGLFRRAL-EENVAFVPGGPFFANGGGENTLRLSYATLDREGIAEGVRRLGRALKGLL 394 (397)
T ss_dssp EECCCSBSSEEEEECSTTCCHHHHHHHHH-HTTEEEEESGGGCTTSCCTTEEEEECSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred EEccCCccEEEEEEcCCCCCHHHHHHHHH-HCCCEEechHHhcCCCCCCCeEEEEcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 566678889999855 34444 5554 569999874 2 999976578999999999999987654
No 56
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}
Probab=100.00 E-value=3.6e-39 Score=316.21 Aligned_cols=347 Identities=16% Similarity=0.171 Sum_probs=264.6
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHH-HhcCC--CCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecC
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEA-KIAGS--EFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQAL 124 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~ 124 (435)
++.+.|||+.|.| +.. ..+.+.+.+++. .+... ... |++..|.+++|+++++++....+.+.+++++. +|+
T Consensus 32 ~g~~~idl~~g~~-~~~--~~~~~~v~~a~~~~~~~~~~~~~-y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~--~t~ 105 (407)
T 2zc0_A 32 KGVKLISLAAGDP-DPE--LIPRAVLGEIAKEVLEKEPKSVM-YTPANGIPELREELAAFLKKYDHLEVSPENIV--ITI 105 (407)
T ss_dssp SSCCCEECCSCCC-CTT--TSCHHHHHHHHHHHHHHCGGGGS-CCCTTCCHHHHHHHHHHHHHHSCCCCCGGGEE--EES
T ss_pred CCCceEeCCCCCC-Cch--hCCHHHHHHHHHHHHhhcccccc-CCCCCCCHHHHHHHHHHHHHhcCCCCCcceEE--Eec
Confidence 3458999999986 332 223344444333 33221 235 88888999999999999932111112367888 999
Q ss_pred CchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhh----cCCCCcEEE-
Q 013839 125 SGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIK----NAPDSSFFL- 199 (435)
Q Consensus 125 gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~----~~~~~~~~v- 199 (435)
||++|+.++ +..++.+||+|+++.|+|.++...++..|++++.++.. ++ ++|+++|++++. +. ++++++
T Consensus 106 g~t~a~~~~--~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~-~~--~~d~~~l~~~l~~~~~~~-~~~~~v~ 179 (407)
T 2zc0_A 106 GGTGALDLL--GRVLIDPGDVVITENPSYINTLLAFEQLGAKIEGVPVD-ND--GMRVDLLEEKIKELKAKG-QKVKLIY 179 (407)
T ss_dssp HHHHHHHHH--HHHHCCTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEE-TT--EECHHHHHHHHHHHHHTT-CCEEEEE
T ss_pred CHHHHHHHH--HHHhcCCCCEEEEeCCChHHHHHHHHHcCCEEEEcccC-CC--CCCHHHHHHHHHhhhccc-CCceEEE
Confidence 999999998 66667899999999999999999999999999999883 33 599999999987 32 356776
Q ss_pred EeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcc
Q 013839 200 LHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRV 279 (435)
Q Consensus 200 ~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~Rv 279 (435)
++++|+||||.+++.+++++|+++|++||+++|+||+|..+.+++. ...++..+ +..+++++++|+||.++ +|+|+
T Consensus 180 ~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~--~~~~~~~~-~~~~~~i~~~s~sK~~~-~G~r~ 255 (407)
T 2zc0_A 180 TIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGG--DIVPLKAL-DNEGRVIVAGTLSKVLG-TGFRI 255 (407)
T ss_dssp ECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCS--SCCCGGGG-CSSCCEEEEEESTTTTC-TTSCC
T ss_pred ECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCC--CCCChhhc-CCCCCEEEEcccccccC-CCcce
Confidence 6899999999999999999999999999999999999999887531 11223233 22357899999999999 99999
Q ss_pred cEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhCC
Q 013839 280 GCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWI-DEVKIMADRIQRKRTTLRQNLEKLGS 358 (435)
Q Consensus 280 G~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~ 358 (435)
||+++ +++ +++.+.........+++.+.|.++..++.... +. +++++.+++++++++.+.+.|++...
T Consensus 256 G~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~l~~~L~~~~~ 324 (407)
T 2zc0_A 256 GWIIA---EGE----ILKKVLMQKQPIDFCAPAISQYIALEYLKRGY----FEKYHLEGALLGYKEKRDIMLKALENHLP 324 (407)
T ss_dssp EEEEC---CHH----HHHHHHHHHTTTTSSSCHHHHHHHHHHHHTTH----HHHHTTTTHHHHHHHHHHHHHHHHHHHCT
T ss_pred EEEec---CHH----HHHHHHHHHHhhcCCCCHHHHHHHHHHHHcCC----chHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99964 777 77777776655556678899999989887642 33 55778888999999999999987521
Q ss_pred CCCccccccCcceeEecCC----CHH-HHHHHhhhccEEEeCC--------C----cEEeccCCCCcHHHHHHHHHHHHH
Q 013839 359 SLNWEHITNQLGMFCFSGL----TPY-QVDRLAKEFHIYMTQD--------G----RISMAGVTTGNVNYLANAIHEVTR 421 (435)
Q Consensus 359 ~~~~~~~~~~~g~~~~~~~----~~~-~~~~ll~~~gI~i~pg--------g----Ris~~~~~~e~i~~~~~~l~~~l~ 421 (435)
++.+..+.+|+|+|+.+ +.+ +.+.+++++||.+.|| + ||+++..+++++++++++|+++++
T Consensus 325 --~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~ 402 (407)
T 2zc0_A 325 --NAEFTKPIAGMFVMFFLPEGADGISFANELMEREGVVVVPGKPFYTDESGKNAIRLNFSRPSKEEIPIGIKKLAKLYK 402 (407)
T ss_dssp --TSCBCCCSBSSEEEEECSTTCCHHHHHHHHHHHTCEECBCSGGGCSSSCCTTEEEEECSSSCTTHHHHHHHHHHHHHH
T ss_pred --CCEEecCCCcEEEEEEcCCCCCHHHHHHHHHHhCCeEEECchhccCCCCCCCeEEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 14555677888998865 344 4466655449999875 1 999976578999999999999987
Q ss_pred hh
Q 013839 422 SE 423 (435)
Q Consensus 422 ~~ 423 (435)
+.
T Consensus 403 ~~ 404 (407)
T 2zc0_A 403 EK 404 (407)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 57
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}
Probab=100.00 E-value=8.1e-40 Score=321.78 Aligned_cols=360 Identities=14% Similarity=0.080 Sum_probs=258.8
Q ss_pred CCchhhHHHHHhc-CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCC-----CCCCCCCCcccHHHHHHHHHhHcC
Q 013839 34 KDPINGVTEAFLA-DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGS-----EFLESISASVSTKMVEESVKLVYG 107 (435)
Q Consensus 34 ~~~~~~~~~~~~~-~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~Y~~~~g~~~lr~~ia~~l~~ 107 (435)
+..+...++++.+ ..++++|+|+.|.| +. .+.+.+.+++++.++... ...+|++..|.++||+++++++..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~i~l~~g~p-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~ 90 (417)
T 3g7q_A 14 HSGITRLMEDLNDGLRTPGAIMLGGGNP-AH--IPAMQDYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLLRE 90 (417)
T ss_dssp --CHHHHHHHHHC-----CCEECSCCCC-CC--CHHHHHHHHHHHHHHHHHTHHHHHHHSTTCTTSHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHhhccCCCceEecCcCC-CC--CChHHHHHHHHHHHHhhCCcccceeeccCCCCCcHHHHHHHHHHHHH
Confidence 3445566666544 34579999999997 22 244456666666655321 124699999999999999999843
Q ss_pred CCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCC-----EEEEc-CCCChhhHHHHhh------CCCCeeeeeecCC
Q 013839 108 KDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPES-----HIYFP-DPTWSNHHNIWRD------AQIPERTYHYYDP 175 (435)
Q Consensus 108 ~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd-----~Vlv~-~p~y~~~~~~~~~------~g~~~~~v~~~~~ 175 (435)
..+..+.+++|+ +|+|+++|+.++ +..++.+|| +|+++ +|+|.++...+.. .+..+..++. +.
T Consensus 91 ~~g~~~~~~~i~--~t~G~t~al~~~--~~~l~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 165 (417)
T 3g7q_A 91 TLGWDIEPQNIA--LTNGSQSAFFYL--FNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSARPNIELLPE-GQ 165 (417)
T ss_dssp HHCCCCCGGGEE--EESCHHHHHHHH--HHHHSBC----CCBEEEESSCCCHHHHHC-----CCEEECCCEEEEEGG-GE
T ss_pred HhCCCCCcccEE--EeCCcHHHHHHH--HHHHcCCCccCCcceEEEeCCCccccchhhccchhhhccccCcccccCC-cc
Confidence 222234478988 999999999998 666778887 89997 9999998765432 2222333332 11
Q ss_pred CCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHh
Q 013839 176 DSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIF 255 (435)
Q Consensus 176 ~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~ 255 (435)
.++.+|++.++ +. ++++++++++||||||.+++.+++++|+++|++||+++|+||+|..+.... . .... .
T Consensus 166 ~~~~~d~~~l~--~~---~~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~~~-~--~~~~--~ 235 (417)
T 3g7q_A 166 FKYHVDFEHLH--IG---EETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFPGI-I--FSEA--R 235 (417)
T ss_dssp EEEECCGGGCC--CC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCC-B--CSCC--C
T ss_pred cccccCHHHhc--cc---cCceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCccccccc-c--cccc--c
Confidence 24678999987 44 678999999999999999999999999999999999999999997543211 0 0000 1
Q ss_pred hhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHH
Q 013839 256 LEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEV 335 (435)
Q Consensus 256 ~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~ 335 (435)
.+..+++++++|+|| ++++|+|+||+++ +++ +++.+.........+++.++|.++..++.+.. +.++.
T Consensus 236 ~~~~~~~i~~~s~sK-~~~~G~r~G~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~ 303 (417)
T 3g7q_A 236 PLWNPNIILCMSLSK-LGLPGSRCGIIIA---NDK----TITAIANMNGIISLAPGGMGPAMMCEMIKRND----LLRLS 303 (417)
T ss_dssp CCCCTTEEEEEESGG-GTCTTSCCEEEEC---CHH----HHHHHHHHHHHHCCCCCSHHHHHHHHHHHTTC----HHHHH
T ss_pred cCCCCCEEEEEechh-ccCCCcceEEEEe---CHH----HHHHHHHhhcceeeCCCcHHHHHHHHHHcCcc----hHHHH
Confidence 133578999999999 6889999999963 888 88888887766677889999999999998765 33444
Q ss_pred HH-HHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCC-----CHHHHHHHhhhccEEEeCC-------------
Q 013839 336 KI-MADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL-----TPYQVDRLAKEFHIYMTQD------------- 396 (435)
Q Consensus 336 ~~-~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~~~~ll~~~gI~i~pg------------- 396 (435)
.+ .+++++++++.+.+.|++.-....+.+..+++|+|+|+.+ +.+.+...+.++||.+.||
T Consensus 304 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~~ 383 (417)
T 3g7q_A 304 ETVIKPFYYQRVQQTIAIIRRYLSEERCLIHKPEGAIFLWLWFKDLPITTELLYQRLKARGVLMVPGHYFFPGLDKPWPH 383 (417)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHCCTTTCEEECCCBSSEEEEECTTCSSCHHHHHHHHHHTTEECEEGGGGCTTBSSCCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCceeeCCCcceEEEEEcCCCCCCHHHHHHHHHHCCEEEECchhhCCCCcccccc
Confidence 44 6778888888888888764111125667788999999843 4555544457789999874
Q ss_pred --C--cEEeccCCCCcHHHHHHHHHHHHHhhh
Q 013839 397 --G--RISMAGVTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 397 --g--Ris~~~~~~e~i~~~~~~l~~~l~~~~ 424 (435)
+ |||++. +++++++++++|++++++..
T Consensus 384 ~~~~iRis~~~-~~~~i~~~~~~l~~~l~~~~ 414 (417)
T 3g7q_A 384 THQCMRMNYVP-EPDKIEAGVKILAEEIERAW 414 (417)
T ss_dssp GGGEEEEESCS-CHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEecC-CHHHHHHHHHHHHHHHHHHH
Confidence 1 999987 89999999999999997654
No 58
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=100.00 E-value=8.5e-39 Score=308.92 Aligned_cols=324 Identities=10% Similarity=0.039 Sum_probs=257.5
Q ss_pred CCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchh
Q 013839 49 SPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTG 128 (435)
Q Consensus 49 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~ 128 (435)
.+++|+|+.|.+ +. +.++.+++.+...+. . ...|++..+ +++|+++++++ +.. ++++. +++|+++
T Consensus 29 ~~~~i~l~~~~~-~~---~~~~~v~~a~~~~~~-~-~~~y~~~~~-~~lr~~la~~~-~~~-----~~~v~--~~~g~~~ 93 (365)
T 3get_A 29 VKEVIKLASNEN-PF---GTPPKAIECLRQNAN-K-AHLYPDDSM-IELKSTLAQKY-KVQ-----NENII--IGAGSDQ 93 (365)
T ss_dssp CSCCEECSSCCC-TT---CSCHHHHHHHHHHGG-G-TTSCCCTTC-HHHHHHHHHHH-TCC-----GGGEE--EESSHHH
T ss_pred CCceEEecCCCC-CC---CCCHHHHHHHHHHHH-h-hccCCCCCh-HHHHHHHHHHh-CCC-----cceEE--ECCCHHH
Confidence 378999999984 22 334444444444443 3 556888766 89999999998 322 56888 9999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCC
Q 013839 129 ACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPT 208 (435)
Q Consensus 129 a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPt 208 (435)
++.++ +..++.+||+|+++.|+|..+...++..|++++.+++ +++++ +|+++++++++ ++++++++++|||||
T Consensus 94 a~~~~--~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~-~~~~~-~d~~~l~~~l~---~~~~~v~~~~p~npt 166 (365)
T 3get_A 94 VIEFA--IHSKLNSKNAFLQAGVTFAMYEIYAKQCGAKCYKTQS-ITHNL-DEFKKLYETHK---DEIKLIFLCLPNNPL 166 (365)
T ss_dssp HHHHH--HHHHCCTTCEEEECSSCCTHHHHHHHHHTCEEEECSS-SSCCH-HHHHHHHHHTT---TTEEEEEEESSCTTT
T ss_pred HHHHH--HHHHhCCCCEEEEeCCChHHHHHHHHHcCCEEEEEec-CCCCC-CCHHHHHHHhC---CCCCEEEEcCCCCCC
Confidence 99998 6667889999999999999999999999999999987 45567 99999999997 678999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCceeeeeccCCCccC--CCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEe
Q 013839 209 GVDPTEEQWREISYQFKVKGHFPFFDMAYQGFAS--GDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILC 286 (435)
Q Consensus 209 G~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~ 286 (435)
|.+++.+++++|+++| ++|+++|+|++|.++.+ .+. ...+.....+..+++++++|+||.+|++|+|+||+++
T Consensus 167 G~~~~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~-- 241 (365)
T 3get_A 167 GECLDASEATEFIKGV-NEDCLVVIDAAYNEFASFKDSK--KHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGYGIA-- 241 (365)
T ss_dssp CCCCCHHHHHHHHHTS-CTTSEEEEECTTHHHHHHHCGG--GCCCHHHHHHHCTTEEEEEESSSTTSCTTTCCEEEEE--
T ss_pred CCCcCHHHHHHHHHhC-CCCcEEEEeCccHHHhcccCCc--ccccHhHHhccCCCEEEEeecchHhcCcchheEEEEc--
Confidence 9999999999999998 57999999999988774 211 1112222234457899999999999999999999974
Q ss_pred cChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccc
Q 013839 287 VDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHIT 366 (435)
Q Consensus 287 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 366 (435)
+++ +++.+...... .+++.++|.++..+|.+. +++++.+++++++++.+.+.|++++ +.+.+
T Consensus 242 -~~~----~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~l~~~g----~~~~~ 303 (365)
T 3get_A 242 -NAN----IISAFYKLRAP--FNVSNLALKAAVAAMDDD-------EFTEKTLENNFSQMELYKEFAKKHN----IKIID 303 (365)
T ss_dssp -CHH----HHHHHHHHSCT--TCSCHHHHHHHHHHHTCH-------HHHHHHHHHHHHHHHHHHHHHHHTT----CEECC
T ss_pred -CHH----HHHHHHHhcCC--CCcCHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHHHHHhCC----CEECC
Confidence 888 88888775443 468899999999999864 6678889999999999999999886 44555
Q ss_pred cCcceeEecCC---CHHHHHHHhhhccEEEeCCC-------cEEeccCCCCcHHHHHHHHHHHH
Q 013839 367 NQLGMFCFSGL---TPYQVDRLAKEFHIYMTQDG-------RISMAGVTTGNVNYLANAIHEVT 420 (435)
Q Consensus 367 ~~~g~~~~~~~---~~~~~~~ll~~~gI~i~pgg-------Ris~~~~~~e~i~~~~~~l~~~l 420 (435)
+. |.|+|+.+ +.+.+.+.|.++||.+.+|+ ||+++ +++++++++++|++++
T Consensus 304 ~~-~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~iRis~~--~~~~i~~l~~~l~~~l 364 (365)
T 3get_A 304 SY-TNFITYFFDEKNSTDLSEKLLKKGIIIRNLKSYGLNAIRITIG--TSYENEKFFTEFDKIL 364 (365)
T ss_dssp CS-SSEEEEECSSSCHHHHHHHHHTTTEECEECGGGTCSEEEEECC--CHHHHHHHHHHHHHHH
T ss_pred CC-CeEEEEECCCCCHHHHHHHHHHCCEEEEECccCCCCEEEEEcC--CHHHHHHHHHHHHHHh
Confidence 54 45678865 45555444566899999872 99985 6889999999998875
No 59
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=100.00 E-value=1.3e-39 Score=317.32 Aligned_cols=339 Identities=10% Similarity=0.074 Sum_probs=262.2
Q ss_pred CCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchh
Q 013839 49 SPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTG 128 (435)
Q Consensus 49 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~ 128 (435)
++++|+|+.|.+ +. +.++.+.+.+...+... ...|++ +..++++++++++....+.+..++++. +++||++
T Consensus 31 ~~~~i~l~~~~~-~~---~~~~~v~~a~~~~~~~~-~~~y~~--~~~~~~~~l~~~l~~~~g~~~~~~~v~--~~~g~~~ 101 (391)
T 4dq6_A 31 TNDLLPMWVADM-DF---KAAPCIIDSLKNRLEQE-IYGYTT--RPDSYNESIVNWLYRRHNWKIKSEWLI--YSPGVIP 101 (391)
T ss_dssp CSCSEECCSSSC-SS---CCCHHHHHHHHHHHTTC-CCCCBC--CCHHHHHHHHHHHHHHHCCCCCGGGEE--EESCHHH
T ss_pred CCCceeccccCC-CC---CCCHHHHHHHHHHHhCC-CCCCCC--CCHHHHHHHHHHHHHHhCCCCcHHHeE--EcCChHH
Confidence 478999999984 22 44444545444555433 455655 568999999999733222123367888 9999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeec--CCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCC
Q 013839 129 ACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYY--DPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHN 206 (435)
Q Consensus 129 a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~--~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~N 206 (435)
|+.++ +..++.+||+|+++.|+|.++...++..|++++.++.. ++.++.+|+++++++++ + ++++++++|+|
T Consensus 102 a~~~~--~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~---~-~~~v~i~~p~n 175 (391)
T 4dq6_A 102 AISLL--INELTKANDKIMIQEPVYSPFNSVVKNNNRELIISPLQKLENGNYIMDYEDIENKIK---D-VKLFILCNPHN 175 (391)
T ss_dssp HHHHH--HHHHSCTTCEEEECSSCCTHHHHHHHHTTCEEEECCCEECTTSCEECCHHHHHHHCT---T-EEEEEEESSBT
T ss_pred HHHHH--HHHhCCCCCEEEEcCCCCHHHHHHHHHcCCeEEeeeeeecCCCceEeeHHHHHHHhh---c-CCEEEEECCCC
Confidence 99988 66678899999999999999999999999999999884 23446799999999997 4 89999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhh-hcCCeEEEEecccccccccCCcccEEEEE
Q 013839 207 PTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFL-EDEHLIGCAQSYAKSMGLYGHRVGCLSIL 285 (435)
Q Consensus 207 PtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~s~SK~~g~~G~RvG~~~~~ 285 (435)
|||.+++.+++++|+++|++||+++|+||+|.++.+++. ...++..+. +..++++++.|+||.+|++|+|+||++
T Consensus 176 ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~-- 251 (391)
T 4dq6_A 176 PVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKH--KHIPMASISKEFEKNTITCMAPTKTFNIAGLQSSYVV-- 251 (391)
T ss_dssp TTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTC--CCCCGGGSCHHHHHTEEEEECSHHHHTCGGGCCEEEE--
T ss_pred CCCcCcCHHHHHHHHHHHHHcCCEEEeeccccccccCCC--CccCHHHcCccccCcEEEEEechhhccCcccceEEEE--
Confidence 999999999999999999999999999999999887642 122222221 123678999999999999999999996
Q ss_pred ecChhHHHHHHHHHHHHhh-ccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCCcc
Q 013839 286 CVDSKQAAAIRSQIQQIAR-AMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKL-GSSLNWE 363 (435)
Q Consensus 286 ~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~ 363 (435)
+++++ +++.+..... ..+.+++.+++.++..++.... +++++.+++++++++.+.+.|++. + ++.
T Consensus 252 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~------~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~ 318 (391)
T 4dq6_A 252 LPDEK----DYKLLDDAFTRIDIKRNNCFSLVATEASYNNGE------SWLESFLEYLESNIDFAIKYINENMP---KLK 318 (391)
T ss_dssp CCSHH----HHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCH------HHHHHHHHHHHHHHHHHHHHHHHHCT---TSE
T ss_pred eCCHH----HHHHHHHHHHhhcCCCCCHHHHHHHHHHHhchH------HHHHHHHHHHHHHHHHHHHHHHhhCC---CCE
Confidence 43447 7777776543 3445788888888888886432 567888899999999999999874 3 266
Q ss_pred ccccCcceeEecCC-----CHHHH-HHHhhhccEEEeCC--------C--cEEeccCCCCcHHHHHHHHHHHH
Q 013839 364 HITNQLGMFCFSGL-----TPYQV-DRLAKEFHIYMTQD--------G--RISMAGVTTGNVNYLANAIHEVT 420 (435)
Q Consensus 364 ~~~~~~g~~~~~~~-----~~~~~-~~ll~~~gI~i~pg--------g--Ris~~~~~~e~i~~~~~~l~~~l 420 (435)
+..++++++.|+.+ +.+.+ ..+++++||.+.|| + |++++. +++++++++++|++++
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~-~~~~i~~~l~~l~~~l 390 (391)
T 4dq6_A 319 VRKPEGTYLLWVDFSALGLSDEELESILVQKGKVALNQGNSFGIGGSGYQRINLAC-PRSMLEEALIRIKNAI 390 (391)
T ss_dssp ECCCSBSSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCTTCTTEEEEECCS-CHHHHHHHHHHHHHHH
T ss_pred ecCCCccEEEEEEhhhcCCCHHHHHHHHHHhCCEEeeCchhhCCCCCCeEEEEEcC-CHHHHHHHHHHHHHHh
Confidence 77889999988754 44444 55655449999885 2 999985 8899999999998876
No 60
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=100.00 E-value=1.3e-38 Score=306.39 Aligned_cols=328 Identities=13% Similarity=0.125 Sum_probs=259.9
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCc
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSG 126 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg 126 (435)
.+++++|+|+.|.+ +. +.++.+.+.+...+. . ...|+ ..+.+++|+++++++ +.. ++++. +++||
T Consensus 13 ~~~~~~i~l~~~~~-~~---~~~~~v~~a~~~~~~-~-~~~y~-~~~~~~l~~~la~~~-~~~-----~~~i~--~~~g~ 77 (354)
T 3ly1_A 13 PSTDNPIRINFNEN-PL---GMSPKAQAAARDAVV-K-ANRYA-KNEILMLGNKLAAHH-QVE-----APSIL--LTAGS 77 (354)
T ss_dssp CCSSSCEECSSCCC-SS---CCCHHHHHHHHHTGG-G-TTSCC-HHHHHHHHHHHHHHT-TSC-----GGGEE--EESHH
T ss_pred CCCCceEEccCCCC-CC---CCCHHHHHHHHHHHh-h-CcCCC-CCchHHHHHHHHHHh-CCC-----hHHEE--EeCCh
Confidence 45689999999984 22 344444444444443 3 45574 468899999999998 322 56888 99999
Q ss_pred hhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCC
Q 013839 127 TGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHN 206 (435)
Q Consensus 127 ~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~N 206 (435)
++|+.++ +..++.+||+|+++.|+|.++...++..|++++.++. .+++++|+++|++++++. ++++++++++|||
T Consensus 78 ~~a~~~~--~~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~d~~~l~~~l~~~-~~~~~v~l~~p~n 152 (354)
T 3ly1_A 78 SEGIRAA--IEAYASLEAQLVIPELTYGDGEHFAKIAGMKVTKVKM--LDNWAFDIEGLKAAVAAY-SGPSIVYLVNPNN 152 (354)
T ss_dssp HHHHHHH--HHHHCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECC--CTTSCCCHHHHHHHHHTC-SSCEEEEEESSCT
T ss_pred HHHHHHH--HHHHhCCCCeEEECCCCchHHHHHHHHcCCEEEEecC--CCCCCCCHHHHHHHhccC-CCCCEEEEeCCCC
Confidence 9999998 6667889999999999999999999999999999987 335899999999999743 3688999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcC-CeEEEEecccccccccCCcccEEEEE
Q 013839 207 PTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDE-HLIGCAQSYAKSMGLYGHRVGCLSIL 285 (435)
Q Consensus 207 PtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~s~SK~~g~~G~RvG~~~~~ 285 (435)
|||.+++.+++++|++.| +||+++|+|++|.++.+++.. ....... +.. +++++++|+||.+|++|+|+||+++
T Consensus 153 ptG~~~~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~~--~~~~~~~-~~~~~~~i~~~s~sK~~g~~G~r~G~~~~- 227 (354)
T 3ly1_A 153 PTGTITPADVIEPWIASK-PANTMFIVDEAYAEFVNDPRF--RSISPMI-TQGAENIILLKTFSKIHAMAGMRVGYAVA- 227 (354)
T ss_dssp TTCCCCCHHHHHHHHHTC-CTTEEEEEECTTGGGCCCTTC--CCSHHHH-HTTCSSEEEEEESSSTTCCGGGCCEEEEC-
T ss_pred CcCCCcCHHHHHHHHHhC-CCCeEEEEeccHHHhcccccc--CCHHHHh-hhcCCCEEEEeeChhhccChhhhheeeec-
Confidence 999999999999999999 899999999999988876421 1122222 333 7899999999999999999999964
Q ss_pred ecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccc
Q 013839 286 CVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHI 365 (435)
Q Consensus 286 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 365 (435)
+++ +++.+...... .+++.+.|.++..+|.+. +++++.+++++++++.+.+.|++++. .+.
T Consensus 228 --~~~----~~~~~~~~~~~--~~~~~~~~~a~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~l~~~~~----~~~ 288 (354)
T 3ly1_A 228 --HPT----VIALMGRYVAG--EKINFSGVDAALASMNDS-------AFITYSKKSNDVSRQILLKALEDLKL----PYL 288 (354)
T ss_dssp --CHH----HHHHHGGGTTC--SCCCHHHHHHHHHHTTCH-------HHHHHHHHHHHHHHHHHHHHHHHHTC----CBC
T ss_pred --CHH----HHHHHHHhcCC--CCCCHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHHHCCC----eEC
Confidence 888 88888776544 678999999999999864 56788889999999999999998863 444
Q ss_pred ccCcceeEecCC--CHHHHHHHhhhccEEEeCC------C--cEEeccCCCCcHHHHHHHHHHHHHh
Q 013839 366 TNQLGMFCFSGL--TPYQVDRLAKEFHIYMTQD------G--RISMAGVTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 366 ~~~~g~~~~~~~--~~~~~~~ll~~~gI~i~pg------g--Ris~~~~~~e~i~~~~~~l~~~l~~ 422 (435)
++ .|.|+|+.+ +.+.+.+.|.++||.+. | + ||+++ +++++++++++|++++++
T Consensus 289 ~~-~~~~~~~~~~~~~~~~~~~l~~~gi~v~-g~~~~~~~~iRis~~--~~~~i~~~~~~l~~~l~~ 351 (354)
T 3ly1_A 289 PS-EGNFVFHQLVVPLKDYQTHMADAGVLIG-RAFPPADNWCRISLG--TPQEMQWVADTMREFRKK 351 (354)
T ss_dssp CC-CSSEEEEECSSCHHHHHHHHHHTTEECC-CCCTTCTTEEEEECC--CHHHHHHHHHHHHHHHHT
T ss_pred CC-CceEEEEECCCCHHHHHHHHHHCCEEEe-ecCCCCCCEEEEEcC--CHHHHHHHHHHHHHHHHh
Confidence 44 556788876 45555444557899998 3 1 99984 678999999999998864
No 61
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=100.00 E-value=1.2e-39 Score=316.17 Aligned_cols=313 Identities=16% Similarity=0.140 Sum_probs=257.2
Q ss_pred HHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCCh
Q 013839 75 EAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWS 154 (435)
Q Consensus 75 ~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~ 154 (435)
++.+.+..+ ...|.+..|.++|++++++++.+.. ++++. +++||++|+.++ +.+++.+||+|+++.|+|.
T Consensus 47 ~~~~~~~~~-~~~y~~~~g~~~l~~~la~~~~~~~-----~~~v~--~~~g~~~a~~~~--~~~l~~~gd~Vl~~~~~~~ 116 (375)
T 3op7_A 47 DFYKKLQGT-KLNYGWIEGSPAFKKSVSQLYTGVK-----PEQIL--QTNGATGANLLV--LYSLIEPGDHVISLYPTYQ 116 (375)
T ss_dssp HHHHHHHTS-CCSSCCTTCCHHHHHHHHTTSSSCC-----GGGEE--EESHHHHHHHHH--HHHHCCTTCEEEEEESSCT
T ss_pred HHHHHHhcC-CcCCCCCCChHHHHHHHHHHhccCC-----hhhEE--EcCChHHHHHHH--HHHhcCCCCEEEEeCCCch
Confidence 334444444 5679999999999999999974322 56888 999999999998 6777899999999999999
Q ss_pred hhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeee
Q 013839 155 NHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFD 234 (435)
Q Consensus 155 ~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~D 234 (435)
++...++..|++++.+++..++++.+|+++++++++ ++++++++++|+||||.+++.+++++|.++|++||+++|+|
T Consensus 117 ~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~---~~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~D 193 (375)
T 3op7_A 117 QLYDIPKSLGAEVDLWQIEEENGWLPDLEKLRQLIR---PTTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSD 193 (375)
T ss_dssp HHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCC---TTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEE
T ss_pred hHHHHHHHcCCEEEEEeccccCCCCCCHHHHHHhhc---cCCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 999999999999999998544567799999999997 67889999999999999999999999999999999999999
Q ss_pred ccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhH
Q 013839 235 MAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHG 314 (435)
Q Consensus 235 eay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 314 (435)
|+|..+.+++. +.. .+..+++++++|+||.+|++|+|+||++ + +++ +++.++........+++.+.
T Consensus 194 e~~~~~~~~~~----~~~---~~~~~~~i~~~s~sK~~~~~G~r~G~v~--~-~~~----l~~~~~~~~~~~~~~~~~~~ 259 (375)
T 3op7_A 194 EVYRSFSELDV----PSI---IEVYDKGIAVNSLSKTYSLPGIRIGWVA--A-NHQ----VTDILRDYRDYTMICAGVFD 259 (375)
T ss_dssp CCSCCCSSSCC----CCH---HHHCTTEEEEEESSSSSSCGGGCCEEEE--C-CHH----HHHHHTTTGGGTTSCCCHHH
T ss_pred cccccccccCC----Cch---hhhcCCEEEEeEChhhcCCcccceEEEE--e-CHH----HHHHHHHHHhhhccCCCcHH
Confidence 99999887521 111 1234678999999999999999999996 3 888 88888877666667788898
Q ss_pred HHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCC----CH-HHHHHHhhhc
Q 013839 315 ILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL----TP-YQVDRLAKEF 389 (435)
Q Consensus 315 q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~----~~-~~~~~ll~~~ 389 (435)
+.++..++... .+++++.+++++++++.+.+.|++.+. +.+..+.++++.|+.+ +. +++..+++++
T Consensus 260 ~~~~~~~l~~~------~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 330 (375)
T 3op7_A 260 DLVAQLALAHY------QEILERNRHILEENLAILDQWIEEEPL---VSYIRPAVVSTSFVKIAVDMPMEDFCLQLLQEH 330 (375)
T ss_dssp HHHHHHHHHTH------HHHHHHHHHHHHHHHHHHHHHHHHCTT---EEECCCSSSSCEEEEECCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcc------HHHHHHHHHHHHHHHHHHHHHHhhCCC---ceEecCCCeEEEeEEcCCCCCHHHHHHHHHHhC
Confidence 88888888653 366788888999999999999988642 5667788887777633 33 4557777789
Q ss_pred cEEEeCCC--------cEEeccCCCCcHHHHHHHHHHHHHhhh
Q 013839 390 HIYMTQDG--------RISMAGVTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 390 gI~i~pgg--------Ris~~~~~~e~i~~~~~~l~~~l~~~~ 424 (435)
||.+.||. |++++. +.+++++++++|++++++..
T Consensus 331 gi~v~~g~~~~~~~~iRi~~~~-~~~~i~~~l~~l~~~l~~~~ 372 (375)
T 3op7_A 331 GVLLVPGNRFERDGYVRLGFAC-EQETLIKGLEKLSQFLRRFD 372 (375)
T ss_dssp CEECEEGGGGTCTTEEEECCCS-CHHHHHHHHHHHHHHHGGGC
T ss_pred CEEEeChhhhCCCCeEEEEecC-CHHHHHHHHHHHHHHHHHHh
Confidence 99999862 999876 66889999999999987654
No 62
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=100.00 E-value=2.1e-39 Score=316.97 Aligned_cols=345 Identities=10% Similarity=0.065 Sum_probs=261.4
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhH
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGA 129 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a 129 (435)
+++|+|+.|.+ +. +.++.+.+.+...+... ...|++. .+++|+++++++....+.+..+++|. +|+||++|
T Consensus 31 ~~~i~l~~~~~-~~---~~~~~v~~a~~~~~~~~-~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~v~--~t~g~~~a 101 (399)
T 1c7n_A 31 NEVVPLSVADM-EF---KNPPELIEGLKKYLDET-VLGYTGP--TEEYKKTVKKWMKDRHQWDIQTDWII--NTAGVVPA 101 (399)
T ss_dssp TTCCCCCSSSC-SS---CCCHHHHHHHHHHHHHC-CCSSBCC--CHHHHHHHHHHHHHHHCCCCCGGGEE--EESSHHHH
T ss_pred CCceeeeecCC-CC---CCCHHHHHHHHHHHhcC-CCCCCCC--cHHHHHHHHHHHHHHhCCCCChhhEE--EcCCHHHH
Confidence 57999999984 22 33333333333333222 4568764 89999999999732111112367888 99999999
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCC-CCCcChHhHHHHhhcCCCCcEEEEeCCCCCCC
Q 013839 130 CRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPD-SKSLDFAALMDDIKNAPDSSFFLLHPSAHNPT 208 (435)
Q Consensus 130 ~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~-~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPt 208 (435)
+.++ +.+++.+||+|+++.|+|.++...++..|++++.+|..+++ ++.+|+++|++++++ ++++++++++|||||
T Consensus 102 ~~~~--~~~l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~--~~~~~v~~~~~~npt 177 (399)
T 1c7n_A 102 VFNA--VREFTKPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKD--KNNKALLFCSPHNPV 177 (399)
T ss_dssp HHHH--HHHHCCTTCEEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTC--TTEEEEEEESSBTTT
T ss_pred HHHH--HHHhcCCCCEEEEcCCCcHhHHHHHHHcCCEEEecccccCCCCEEEcHHHHHHHhcc--CCCcEEEEcCCCCCC
Confidence 9998 66677899999999999999999999999999999873232 356999999999863 467889999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhh-cCCeEEEEecccccccccCCcccEEEEEec
Q 013839 209 GVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLE-DEHLIGCAQSYAKSMGLYGHRVGCLSILCV 287 (435)
Q Consensus 209 G~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~ 287 (435)
|.+++.+++++|+++|++||+++|+||+|.++.+++. ...++..+.. ..++++++.|+||.+|++|+|+||++ ++
T Consensus 178 G~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~--~~ 253 (399)
T 1c7n_A 178 GRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGY--EHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNII--IK 253 (399)
T ss_dssp TBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTC--CCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEE--CC
T ss_pred CcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCC--CcccHHHcCccccCcEEEEEeChhhccccchheEEEE--EC
Confidence 9999999999999999999999999999999887541 1122222211 13678999999999999999999996 43
Q ss_pred ChhHHHHHHHHHHHHhhcc-ccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hCCCCCcccc
Q 013839 288 DSKQAAAIRSQIQQIARAM-YGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEK-LGSSLNWEHI 365 (435)
Q Consensus 288 ~~~~~~~~~~~l~~~~~~~-~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~ 365 (435)
+++ +++.+....... +.+++.++|.++.++|.... +++++.+++++++++.+.+.|++ ++. +.+.
T Consensus 254 ~~~----~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~~~------~~~~~~~~~~~~~~~~l~~~L~~~~~~---~~~~ 320 (399)
T 1c7n_A 254 NPD----IRERFTKSRDATSGMPFTTLGYKACEICYKECG------KWLDGCIKVIDKNQRIVKDFFEVNHPE---IKAP 320 (399)
T ss_dssp CHH----HHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCH------HHHHHHHHHHHHHHHHHHHHHHHHCTT---SBCC
T ss_pred CHH----HHHHHHHHHhhcccCCCCHHHHHHHHHHHhCCh------HHHHHHHHHHHHHHHHHHHHHHhhCCC---CeEe
Confidence 467 777776655433 33678899988888886422 56788889999999999999987 532 5667
Q ss_pred ccCcceeEecCC-----CHHHH-HHHhhhccEEEeCC--------C--cEEeccCCCCcHHHHHHHHHHHHHhhhh
Q 013839 366 TNQLGMFCFSGL-----TPYQV-DRLAKEFHIYMTQD--------G--RISMAGVTTGNVNYLANAIHEVTRSEQE 425 (435)
Q Consensus 366 ~~~~g~~~~~~~-----~~~~~-~~ll~~~gI~i~pg--------g--Ris~~~~~~e~i~~~~~~l~~~l~~~~~ 425 (435)
.+++++++|+.+ +.+.+ ..+++++||.+.|| + ||+++. +++++++++++|++++++..+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~~-~~~~l~~~l~~l~~~l~~~~~ 395 (399)
T 1c7n_A 321 LIEGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGDGGIGFERINLAA-PSSVIQESLERLNKALKDLKN 395 (399)
T ss_dssp CCSBSSEEEEECGGGCCCHHHHHHHHHHTTCCCCEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHHHHHHC-
T ss_pred cCCceEEEEEEcccCCCCHHHHHHHHHHhCCEEEeCccccCCCCCCeEEEEecc-CHHHHHHHHHHHHHHHHHHHh
Confidence 788899888754 44444 55555789999975 2 999976 678899999999999887653
No 63
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}
Probab=100.00 E-value=3.7e-40 Score=333.21 Aligned_cols=343 Identities=12% Similarity=0.054 Sum_probs=265.9
Q ss_pred CeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCC-CC-ccc-cCCCeeeEecCCch
Q 013839 51 YKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGK-DS-DVV-KEGRSAGVQALSGT 127 (435)
Q Consensus 51 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~-~~-~~~-~~~~v~~~~t~gg~ 127 (435)
++|+|+.|.| +. + +++.++++..++.. ...|.+..|.+++|+++++++... +. .+. .+++|+ +|+|++
T Consensus 104 ~~i~l~~g~~-~~---~-~~~~v~a~~~~~~~--~~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~--~t~G~t 174 (533)
T 3f6t_A 104 DAVNYCHTEL-GL---N-RDKVVAEWVNGAVA--NNYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLF--PTEGGT 174 (533)
T ss_dssp HHHHHHHHTT-CC---C-HHHHHHHHHHHHHT--CSCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEE--EEEHHH
T ss_pred hheeccCCCC-Cc---C-CcHHHHHHHHHHHh--CCCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEE--EECCHH
Confidence 4789999996 32 2 45667777777653 222347889999999999998322 11 111 146788 899999
Q ss_pred hHHHHHHHHHH-----HhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecC--CCCCCcChHhHHHHhhcCCCCcEEEE
Q 013839 128 GACRLFAEFQR-----RFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYD--PDSKSLDFAALMDDIKNAPDSSFFLL 200 (435)
Q Consensus 128 ~a~~~~~~~~~-----~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~--~~~~~~d~e~l~~~i~~~~~~~~~v~ 200 (435)
+|+.++ +.. ++.+||+|++++|+|.++...++..|++++.+++.. ++++++|+++|++++. +++++++
T Consensus 175 ~al~~~--~~~l~~~~l~~~gd~Viv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~d~~~l~~~l~---~~~k~v~ 249 (533)
T 3f6t_A 175 AAIVYA--FHSLAENHLLKKGDKIAINEPIFTPYLRIPELKDYELVEVDLHSYEKNDWEIEPNEIEKLKD---PSIKALI 249 (533)
T ss_dssp HHHHHH--HHHHHHTTSSCTTCEEEEESSCCHHHHTSGGGGGSEEEEECCCEETTTTSEECHHHHHHHSC---TTEEEEE
T ss_pred HHHHHH--HHHhhhhhccCCcCEEEEcCCCcHHHHHHHHHcCCeEEEEEecCCcccCCCCCHHHHHHHhC---CCCeEEE
Confidence 999988 444 678999999999999999999999999988888743 4568999999999987 6789999
Q ss_pred eCCCCCCCCCCCCHHHHHHHHHHHH-hcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcc
Q 013839 201 HPSAHNPTGVDPTEEQWREISYQFK-VKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRV 279 (435)
Q Consensus 201 ~~~p~NPtG~~~~~~~l~~i~~~~~-~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~Rv 279 (435)
+++||||||.+++.+++++|+++|+ +|++++|+||+|.++.++.. ++... ..+++++++||||.+|++|+|+
T Consensus 250 l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~~-----~~~~~--~~~~~i~~~S~SK~~g~~G~Ri 322 (533)
T 3f6t_A 250 VVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPNFK-----SIYSV--VPYNTMLVYSYSKLFGCTGWRL 322 (533)
T ss_dssp EESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTCC-----CHHHH--SGGGEEEEEESHHHHTCGGGCE
T ss_pred EeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccccCcc-----CHhhc--CCCCEEEEecCcccCCCcccce
Confidence 9999999999999999999999999 68999999999998887531 22221 2368999999999999999999
Q ss_pred cEEEEEecChhHHHHHHHH--------------------------------HHHHhhccccCCChhHHHHH----HHHhC
Q 013839 280 GCLSILCVDSKQAAAIRSQ--------------------------------IQQIARAMYGSPPVHGILLV----ATILS 323 (435)
Q Consensus 280 G~~~~~~~~~~~~~~~~~~--------------------------------l~~~~~~~~~~~~~~~q~~~----~~~l~ 323 (435)
||+++ ++++..+++++. +++.....+.+++.+.|.++ ..+|.
T Consensus 323 G~l~~--~~~~~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~~L~ 400 (533)
T 3f6t_A 323 GVIAL--NEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLL 400 (533)
T ss_dssp EEEEE--ESSCHHHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHHHT
T ss_pred EEEEE--CcHHHHHHHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHh
Confidence 99974 355434434332 23334456678888888883 44553
Q ss_pred -C---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCCC---------------------
Q 013839 324 -D---PNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLT--------------------- 378 (435)
Q Consensus 324 -~---~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~--------------------- 378 (435)
+ .. +.+++++.+++++++++.+.+.|. ++ +.+..+++|+|+|+++.
T Consensus 401 ~~~g~~~----~~~~~~~~~~~~~~r~~~l~~~L~-~~----~~~~~~~~g~~~~~~l~~~~~~~~g~~~~~~~~~~~~~ 471 (533)
T 3f6t_A 401 TSTNGGS----DDPYIDIARKLVSERYDQLHDAMQ-AP----KDETDTNTHYYSLIDIYRLAEKIYGKEFRDYLTNNFEQ 471 (533)
T ss_dssp TCBGGGT----BCHHHHHHHHHHHHHHHHHHHHHT-CC----CCCSTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCH
T ss_pred hhccccc----hHHHHHHHHHHHHHHHHHHHHhcC-CC----ccccCCCceEEEEEehHhhhhhccchHHHHHhhccCCH
Confidence 1 11 237788999999999999999996 54 56778899999998652
Q ss_pred HHHHHHHhhhccEEEeCC-------C--cEEeccCCCCcHHHHHHHHHHHHHhhhh
Q 013839 379 PYQVDRLAKEFHIYMTQD-------G--RISMAGVTTGNVNYLANAIHEVTRSEQE 425 (435)
Q Consensus 379 ~~~~~~ll~~~gI~i~pg-------g--Ris~~~~~~e~i~~~~~~l~~~l~~~~~ 425 (435)
.+++.++++++||.+.|| + |+|++..+++++++++++|++++++...
T Consensus 472 ~~~~~~ll~~~GV~v~pg~~f~~~~~~iRls~a~~~~e~i~~~i~~L~~~l~~~~~ 527 (533)
T 3f6t_A 472 VDFLLKLAEKNGVVLVDGVGFGAKPGELRVSQANLPTEDYALIGKQVLELLKEYYE 527 (533)
T ss_dssp HHHHHHHHHHTTSSSCTTEEECSSTTEEEEESSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCEEEeCCcccCCCCCEEEEEEeeCCHHHHHHHHHHHHHHHHHHHH
Confidence 256677888899999987 2 9999877899999999999999987654
No 64
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=100.00 E-value=1.1e-38 Score=311.00 Aligned_cols=341 Identities=9% Similarity=0.019 Sum_probs=255.4
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHH-HHHHHHHhHcCCCCccccCCCeeeEecCCchh
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTK-MVEESVKLVYGKDSDVVKEGRSAGVQALSGTG 128 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~-lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~ 128 (435)
+++|+|+.|.+ +. +.++.+.+.+.+.+... ...|++. .++ +|+++++++....+.+.++++|. +++|+++
T Consensus 28 ~~~i~l~~~~~-~~---~~~~~v~~a~~~~~~~~-~~~y~~~--~~~~lr~~la~~l~~~~g~~~~~~~v~--~t~g~~~ 98 (390)
T 1d2f_A 28 ADLLPFTISDM-DF---ATAPCIIEALNQRLMHG-VFGYSRW--KNDEFLAAIAHWFSTQHYTAIDSQTVV--YGPSVIY 98 (390)
T ss_dssp --CEECCSSSC-SS---CCCHHHHHHHHHHHTTC-CCCCCCS--CCHHHHHHHHHHHHHHSCCCCCGGGEE--EESCHHH
T ss_pred CCeeEeeecCC-CC---CCCHHHHHHHHHHHhCC-CCCCCCC--ChHHHHHHHHHHHHHhcCCCCCHHHEE--EcCCHHH
Confidence 47899999985 22 33334444444444332 4568775 678 99999999832222123367888 9999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCC-CCCcChHhHHHHhhcCCCCcEEEEeCCCCCC
Q 013839 129 ACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPD-SKSLDFAALMDDIKNAPDSSFFLLHPSAHNP 207 (435)
Q Consensus 129 a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~-~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NP 207 (435)
|+.++ +.+++.+||+|+++.|+|.++...++..|++++.+|...+. +|.+|+++|++++++ .+++++++++||||
T Consensus 99 al~~~--~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~--~~~~~v~l~~p~np 174 (390)
T 1d2f_A 99 MVSEL--IRQWSETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAK--PECKIMLLCSPQNP 174 (390)
T ss_dssp HHHHH--HHHSSCTTCEEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTS--TTEEEEEEESSCTT
T ss_pred HHHHH--HHHhcCCCCEEEEcCCCcHHHHHHHHHCCCEEEEeecccCCCccccCHHHHHHHhcc--CCCeEEEEeCCCCC
Confidence 99988 66677899999999999999999999999999999874322 356999999999973 26788998999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEec
Q 013839 208 TGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCV 287 (435)
Q Consensus 208 tG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~ 287 (435)
||.+++.+++++|+++|++||+++|+||+|.++.+++. ...++..+.. .-... +.|+||.+|++|+|+||++ ++
T Consensus 175 tG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~-~~~d~-~~s~sK~~~~~G~r~G~~~--~~ 248 (390)
T 1d2f_A 175 TGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQ--PHIPWSNVAR-GDWAL-LTSGSKSFNIPALTGAYGI--IE 248 (390)
T ss_dssp TCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSS--CCCCGGGTCC-SSEEE-EECSHHHHTCGGGCCEEEE--EC
T ss_pred CCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCC--CCcCHHHcch-hhHhh-ccCccHhhcccChhheEEE--EC
Confidence 99999999999999999999999999999999887531 1112222211 10123 9999999999999999996 33
Q ss_pred ChhHHHHHHHHHHHHhh-ccc-cCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hCCCCCccc
Q 013839 288 DSKQAAAIRSQIQQIAR-AMY-GSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEK-LGSSLNWEH 364 (435)
Q Consensus 288 ~~~~~~~~~~~l~~~~~-~~~-~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~ 364 (435)
+++ +++.+..... ... .+++.++|.++..++... .+++++.+++++++++.+.+.|++ ++ ++.+
T Consensus 249 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~------~~~~~~~~~~~~~~~~~l~~~L~~~~~---~~~~ 315 (390)
T 1d2f_A 249 NSS----SRDAYLSALKGRDGLSSPSVLALTAHIAAYQQG------APWLDALRIYLKDNLTYIADKMNAAFP---ELNW 315 (390)
T ss_dssp SHH----HHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHC------HHHHHHHHHHHHHHHHHHHHHHHHHCS---SCCC
T ss_pred CHH----HHHHHHHHHhhhcccCCCCHHHHHHHHHHHhcC------HHHHHHHHHHHHHHHHHHHHHHHhhCC---CCEE
Confidence 467 7777766554 233 478888888888877642 256788889999999999999988 43 2556
Q ss_pred cccCcceeEecCC-----CHHHH-HHHhhhccEEEeCC--------C--cEEeccCCCCcHHHHHHHHHHHHHhh
Q 013839 365 ITNQLGMFCFSGL-----TPYQV-DRLAKEFHIYMTQD--------G--RISMAGVTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 365 ~~~~~g~~~~~~~-----~~~~~-~~ll~~~gI~i~pg--------g--Ris~~~~~~e~i~~~~~~l~~~l~~~ 423 (435)
..+++++++|+.+ +.+.+ ..+++++||.+.|| + ||+++. +++++++++++|++++++.
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~~Ris~~~-~~~~l~~~l~~l~~~l~~~ 389 (390)
T 1d2f_A 316 QIPQSTYLAWLDLRPLNIDDNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGC-PRSKLEKGVAGLINAIRAV 389 (390)
T ss_dssp CCCSBCSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHHHHHH
T ss_pred ecCCccEEEEEEccccCCCHHHHHHHHHHHcCEEeeCccccCCCCCCeEEEEecC-CHHHHHHHHHHHHHHHHhh
Confidence 7788888888744 44444 55554689999875 2 999987 6788999999999988653
No 65
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=100.00 E-value=4.2e-38 Score=303.82 Aligned_cols=322 Identities=11% Similarity=0.064 Sum_probs=253.6
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCch
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~ 127 (435)
..+++|+|+.|++ + .+ +++.+.+++.+.... ...|+ ..+..++|+++++++. .. ++++. +++||+
T Consensus 30 ~~~~~i~l~~~~~-~---~~-~~~~v~~a~~~~~~~-~~~y~-~~~~~~lr~~la~~~~-~~-----~~~v~--~~~g~t 94 (363)
T 3ffh_A 30 GLTKITKLSSNEN-P---LG-TSKKVAAIQANSSVE-TEIYP-DGWASSLRKEVADFYQ-LE-----EEELI--FTAGVD 94 (363)
T ss_dssp TCSCCEECSSCSC-T---TC-CCHHHHHHHHTCBSC-CCBC-----CHHHHHHHHHHHT-CC-----GGGEE--EESSHH
T ss_pred CCCceEEccCCCC-C---CC-CCHHHHHHHHHHHHH-hhcCC-CcchHHHHHHHHHHhC-CC-----hhhEE--EeCCHH
Confidence 3468999999984 2 23 334445555544333 44564 4688999999999983 22 56888 999999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCC
Q 013839 128 GACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNP 207 (435)
Q Consensus 128 ~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NP 207 (435)
+++.++ +..++.+||+|++++|+|..+...++..|++++.++.. +++.+|+++++++++ ++++++++++||||
T Consensus 95 ~a~~~~--~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~---~~~~~v~~~~p~np 167 (363)
T 3ffh_A 95 ELIELL--TRVLLDTTTNTVMATPTFVQYRQNALIEGAEVREIPLL--QDGEHDLEGMLNAID---EKTTIVWICNPNNP 167 (363)
T ss_dssp HHHHHH--HHHHCSTTCEEEEEESSCHHHHHHHHHHTCEEEEEECC--TTSCCCHHHHHHHCC---TTEEEEEEESSCTT
T ss_pred HHHHHH--HHHHccCCCEEEEcCCChHHHHHHHHHcCCEEEEecCC--CCCCcCHHHHHHhcc---cCCCEEEEeCCCCC
Confidence 999998 66678899999999999999999999999999999983 368999999999997 67899999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEec
Q 013839 208 TGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCV 287 (435)
Q Consensus 208 tG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~ 287 (435)
||.+++.+++.+|++.|++ |+++|+|++|.++.++. ..+.....+..+++++++|+||.+|++|+|+||+++
T Consensus 168 tG~~~~~~~l~~l~~~~~~-~~~li~De~~~~~~~~~----~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~--- 239 (363)
T 3ffh_A 168 TGNYIELADIQAFLDRVPS-DVLVVLDEAYIEYVTPQ----PEKHEKLVRTYKNLIITRTFSKIYGLASARVGYGIA--- 239 (363)
T ss_dssp TCCCCCHHHHHHHHTTSCT-TSEEEEECTTGGGCSSC----CCCCGGGGGTCTTEEEEEESSSTTCCSSCCCEEEEE---
T ss_pred cCCCcCHHHHHHHHHhCCC-CcEEEEeCchHhhcCcc----ccCHHHHhhcCCCEEEEeechhhhcCchhceeeeec---
Confidence 9999999999999998888 99999999999887621 112222334567899999999999999999999974
Q ss_pred ChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hCCCCCccccc
Q 013839 288 DSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEK-LGSSLNWEHIT 366 (435)
Q Consensus 288 ~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~~ 366 (435)
+++ +++.+..... ..+++.+++.++..+|.+. +++++.+++++++++.+.+.|++ .+ +.+.+
T Consensus 240 ~~~----~~~~l~~~~~--~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~l~~~~g----~~~~~ 302 (363)
T 3ffh_A 240 DKE----IIRQLNIVRP--PFNTTSIGQKLAIEAIKDQ-------AFIGECRTSNANGIKQYEAFAKRFEK----VKLYP 302 (363)
T ss_dssp CHH----HHHHHHHTCC--SCCCBHHHHHHHHHHHHCH-------HHHHHHHHHHHHHHHHHHHHHHHCTT----CEECC
T ss_pred CHH----HHHHHHHhCC--CCCCCHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHhhCCC----ceECC
Confidence 888 8888877543 4578999999999999754 56788889999999999999998 54 45554
Q ss_pred cCcceeEecCC--CHHHHHHHhhhccEEEeCCC--------cEEeccCCCCcHHHHHHHHHHH
Q 013839 367 NQLGMFCFSGL--TPYQVDRLAKEFHIYMTQDG--------RISMAGVTTGNVNYLANAIHEV 419 (435)
Q Consensus 367 ~~~g~~~~~~~--~~~~~~~ll~~~gI~i~pgg--------Ris~~~~~~e~i~~~~~~l~~~ 419 (435)
+. |.|+|+.+ +.+.+.+.|.++||.+.+|. ||+++ +++++++++++|+++
T Consensus 303 ~~-~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~--~~~~i~~~~~~l~~~ 362 (363)
T 3ffh_A 303 AN-GNFVLIDLGIEAGTIFSYLEKNGYITRSGAALGFPTAVRITIG--KEEDNSAVIALLEKL 362 (363)
T ss_dssp CC-SSEEEEECSSCHHHHHHHHHHTTEECEETTTTTCTTEEEEECC--CHHHHHHHHHHHHHH
T ss_pred CC-CeEEEEECCCCHHHHHHHHHHCCeEEEeCccCCCCCeEEEECC--CHHHHHHHHHHHHHh
Confidence 44 56788866 45555444456899999862 99985 788999999999875
No 66
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=100.00 E-value=3.3e-39 Score=317.93 Aligned_cols=342 Identities=13% Similarity=0.058 Sum_probs=266.7
Q ss_pred CCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchh
Q 013839 49 SPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTG 128 (435)
Q Consensus 49 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~ 128 (435)
+++.|+|+.|.+ +. +.++.+++.+.+++... ...|++. ..++++++++++....+.+.++++|. +++|+++
T Consensus 60 g~~~i~~~~~~~-~~---~~~~~v~~a~~~~~~~~-~~~y~~~--~~~l~~~l~~~l~~~~g~~~~~~~v~--~~~g~~e 130 (421)
T 3l8a_A 60 NPELLQMWVADM-DF---LPVPEIKEAIINYGREH-IFGYNYF--NDDLYQAVIDWERKEHDYAVVKEDIL--FIDGVVP 130 (421)
T ss_dssp CTTCEECCSSCC-CS---CCCHHHHHHHHHHHHHC-CSSCBCC--CHHHHHHHHHHHHHHHCCCCCGGGEE--EESCHHH
T ss_pred CCCeeecccCCC-CC---CCCHHHHHHHHHHHhcC-CcCCCCC--CHHHHHHHHHHHHHHhCCCCCHHHEE--EcCCHHH
Confidence 678999999984 33 44444544444444433 4557664 37899999999843322223467888 9999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeec-CCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCC
Q 013839 129 ACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYY-DPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNP 207 (435)
Q Consensus 129 a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~-~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NP 207 (435)
|+.++ +..++.+||+|+++.|+|.++...++..|.+++.+|+. .+.++.+|+++|++++.+ ++++++++++|+||
T Consensus 131 a~~~a--~~~~~~~gd~Vi~~~~~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~le~~i~~--~~~~~vil~~p~np 206 (421)
T 3l8a_A 131 AISIA--LQAFSEKGDAVLINSPVYYPFARTIRLNDHRLVENSLQIINGRFEIDFEQLEKDIID--NNVKIYLLCSPHNP 206 (421)
T ss_dssp HHHHH--HHHHSCTEEEEEEEESCCHHHHHHHHHTTEEEEEEECEEETTEEECCHHHHHHHHHH--TTEEEEEEESSBTT
T ss_pred HHHHH--HHHhcCCCCEEEECCCCcHHHHHHHHHCCCEEEeccccccCCCeeeCHHHHHHHhhc--cCCeEEEECCCCCC
Confidence 99998 66668899999999999999999999999999999874 234467899999999973 46899999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhh-hcCCeEEEEecccccccccCCcccEEEEEe
Q 013839 208 TGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFL-EDEHLIGCAQSYAKSMGLYGHRVGCLSILC 286 (435)
Q Consensus 208 tG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~ 286 (435)
||.+++.+++++|.++|++||+++|+||+|.++.+++. ...++..+. +..++++.+.|+||.+|++|+|+||++ +
T Consensus 207 tG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~--~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~G~~~--~ 282 (421)
T 3l8a_A 207 GGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGN--THHSLNTLDASYKDFTIILSSATKTFNIAGTKNSFAI--I 282 (421)
T ss_dssp TTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC--CCCCGGGSCTTGGGTEEEEECSHHHHTCGGGCCEEEE--C
T ss_pred CCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCC--CCccHHHcCchhcCcEEEEEeChhhccCchhheEeEE--c
Confidence 99999999999999999999999999999999987642 122332222 234678999999999999999999996 4
Q ss_pred cChhHHHHHHHHHHHHhh-ccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccc
Q 013839 287 VDSKQAAAIRSQIQQIAR-AMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHI 365 (435)
Q Consensus 287 ~~~~~~~~~~~~l~~~~~-~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 365 (435)
++++ +++.+..... ..+.+++.+++.++.+++.... +++++.+++++++++.+.+.|++++ .+...
T Consensus 283 ~~~~----l~~~~~~~~~~~~~~~~n~~~~~a~~aal~~~~------~~~~~~~~~~~~~~~~l~~~L~~~~---~i~~~ 349 (421)
T 3l8a_A 283 QNES----LRRKFQYRQLANNQHEVPTVGMIATQAAFQYGK------PWLEELKTVIEGNIKLVIKELEAKT---KIKVM 349 (421)
T ss_dssp CSHH----HHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHCH------HHHHHHHHHHHHHHHHHHHHHHHHC---SCEEE
T ss_pred CCHH----HHHHHHHHHHhcccCCCCHHHHHHHHHHHhccH------HHHHHHHHHHHHHHHHHHHHHHhCC---CceEe
Confidence 3377 7777766543 3455788899988888886432 5678888999999999999998873 26778
Q ss_pred ccCcceeEecCC-----CH-HHHHHHhhhccEEEeCC--------C--cEEeccCCCCcHHHHHHHHHHHHH
Q 013839 366 TNQLGMFCFSGL-----TP-YQVDRLAKEFHIYMTQD--------G--RISMAGVTTGNVNYLANAIHEVTR 421 (435)
Q Consensus 366 ~~~~g~~~~~~~-----~~-~~~~~ll~~~gI~i~pg--------g--Ris~~~~~~e~i~~~~~~l~~~l~ 421 (435)
.++++++.|+.+ +. ++...+++++||.+.+| + ||+++. +++++++++++|+++++
T Consensus 350 ~~~~~~~~~v~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~-~~~~i~~~l~~l~~~l~ 420 (421)
T 3l8a_A 350 EPEGTYLVWLDFSAYAIAQPQLSEKLQNEAKVVLNDGAHFGKEGKYFARLNVAT-PKNTVQEALSRIISVFG 420 (421)
T ss_dssp CCSBSSEEEEECGGGTCCTTHHHHHHHHTTCEECEEGGGGCGGGTTEEEEECCS-CHHHHHHHHHHHHHHC-
T ss_pred CCCeeEEEEEeccccCCCHHHHHHHHHHhCCEEEECchhhCCCCCCEEEEEecC-CHHHHHHHHHHHHHHHh
Confidence 889999998854 32 45566666789999975 1 999985 88999999999998764
No 67
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*
Probab=100.00 E-value=3.9e-39 Score=315.32 Aligned_cols=337 Identities=17% Similarity=0.142 Sum_probs=242.7
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCC-CCCCCCCCcccHHHHHHHHHhHc-CCCCccccCCCeeeEecCC
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGS-EFLESISASVSTKMVEESVKLVY-GKDSDVVKEGRSAGVQALS 125 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Y~~~~g~~~lr~~ia~~l~-~~~~~~~~~~~v~~~~t~g 125 (435)
++++.|+|+.|.+ +.+.++.+.+.+.++....... ...+|++..|.+++|+++++++. +. .++++|. +++|
T Consensus 31 ~~~~~i~l~~~~~-~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~g~----~~~~~v~--~~~G 103 (400)
T 3asa_A 31 PQHTVINLSIGDT-TQPLNASVAEAFASSIARLSSPTTCRGYGPDFGLPALRQKLSEDFYRGF----VDAKEIF--ISDG 103 (400)
T ss_dssp TTSCCEECSSCCC-CCCCCHHHHHHHHHHHHHHTSSSCCCCCCCTTCCHHHHHHHHHTTSTTS----SCGGGEE--EESC
T ss_pred CCCceEeccCCCC-CCCCCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHcCC----CCHHHEE--EccC
Confidence 4678999999985 3211111222233333322211 24569888899999999999974 31 2367888 8999
Q ss_pred chhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCC-eeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCC
Q 013839 126 GTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIP-ERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSA 204 (435)
Q Consensus 126 g~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~-~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p 204 (435)
+++++.++ ..++.+||+|++++|+|.++...++..|++ ++.++..++.++..|+++ . ++++++++++|
T Consensus 104 ~~~al~~~---~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~----~----~~~~~v~l~~p 172 (400)
T 3asa_A 104 AKVDLFRL---LSFFGPNQTVAIQDPSYPAYLDIARLTGAKEIIALPCLQENAFFPEFPE----D----THIDILCLCSP 172 (400)
T ss_dssp HHHHHHHH---HHHHCSSCEEEEEESCCHHHHHHHHHTTCSEEEEEECCGGGTTCCCCCT----T----CCCSEEEEESS
T ss_pred hHHHHHHH---HHHcCCCCEEEECCCCcHHHHHHHHHcCCcceEecccchhcCcccChhh----c----cCccEEEEeCC
Confidence 99998876 245689999999999999999999999999 998887422233344332 1 35678888899
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEE
Q 013839 205 HNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSI 284 (435)
Q Consensus 205 ~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~ 284 (435)
|||||.+++.+++++|+++|+++|+++|+||+|.++.+++. ...++..+....+++++++|+||.+|++|+|+||+++
T Consensus 173 ~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~s~sK~~g~~GlriG~~~~ 250 (400)
T 3asa_A 173 NNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPS--LPKSIFEIPDARFCAIEINSFSKPLGFAGIRLGWTVI 250 (400)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTT--SCSSGGGSTTGGGTEEEEEECCGGGTTTTCCCEEEEC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCC--CCCchhhCCCCCCceEEEecchhhcCCcchheeEEee
Confidence 99999999999999999999999999999999998876531 1112222222235789999999999999999999963
Q ss_pred EecChhHHHHH-------HHHHHHH-hhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013839 285 LCVDSKQAAAI-------RSQIQQI-ARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKL 356 (435)
Q Consensus 285 ~~~~~~~~~~~-------~~~l~~~-~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 356 (435)
+++ + +..+... ....+.+++.++|.++..+|.+. ++++.+++++++++.+.+.|+++
T Consensus 251 ---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~--------~~~~~~~~~~~~~~~l~~~L~~~ 315 (400)
T 3asa_A 251 ---PQE----LTYADGHFVIQDWERFLSTTFNGASIPAQEAGVAGLSIL--------PQLEAIHYYRENSDLLRKALLAT 315 (400)
T ss_dssp ---CTT----CBCTTSCBHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHT--------TTCHHHHHHHHHHHHHHHHHHHT
T ss_pred ---Chh----hccchhhhHHHHHHHHhccCccCCChHHHHHHHHHhCcH--------HHHHHHHHHHHHHHHHHHHHHHC
Confidence 666 4 3433322 22234468899999888887532 35567788899999999999887
Q ss_pred CCCCCccccccCcceeEecC-CC----H-HHHHHHhhhccEEEeCC--------C--cEEeccCCCCcHHHHHHHHHHHH
Q 013839 357 GSSLNWEHITNQLGMFCFSG-LT----P-YQVDRLAKEFHIYMTQD--------G--RISMAGVTTGNVNYLANAIHEVT 420 (435)
Q Consensus 357 ~~~~~~~~~~~~~g~~~~~~-~~----~-~~~~~ll~~~gI~i~pg--------g--Ris~~~~~~e~i~~~~~~l~~~l 420 (435)
+ +.+..+.+|+|+|+. +. . +++..+++++||.+.|| + ||++.. +++++++++++|++++
T Consensus 316 g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~~g~~f~~~~~~~iRis~~~-~~e~i~~~l~~l~~~~ 390 (400)
T 3asa_A 316 G----FEVFGGEHAPYLWVKPTQANISDRDLFDFFLREYHIAITPGIGFGRSGSGFVRFSSLG-KREDILAACERLQMAP 390 (400)
T ss_dssp T----CEEEECSSSSEEEEECCCTTCCTTTHHHHHHHHHSEECEEGGGGCGGGTTCEEEECCS-CHHHHHHHHHHHHC--
T ss_pred C----CeeeCCCCceEEEEeccCCCCCHHHHHHHHHHhCCEEEeChhHhCCCCCCEEEEEeeC-CHHHHHHHHHHHHHHH
Confidence 6 456667778899987 52 2 45677777779999875 1 999644 8899999999999988
Q ss_pred Hhhh
Q 013839 421 RSEQ 424 (435)
Q Consensus 421 ~~~~ 424 (435)
++..
T Consensus 391 ~~~~ 394 (400)
T 3asa_A 391 ALQS 394 (400)
T ss_dssp ----
T ss_pred Hhhh
Confidence 7654
No 68
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Probab=100.00 E-value=5.7e-39 Score=318.43 Aligned_cols=352 Identities=14% Similarity=0.082 Sum_probs=262.6
Q ss_pred CCCee-eeecceecCCCCCcccchHHHHHHHHhcCC-------C-----CCCCCCCcccHHHHHHHHHhHcCCCCccccC
Q 013839 49 SPYKI-NLGVGAYRDDKGRPVVLQCVREAEAKIAGS-------E-----FLESISASVSTKMVEESVKLVYGKDSDVVKE 115 (435)
Q Consensus 49 ~~~~i-~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~-------~-----~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~ 115 (435)
++++| +|+.|.| +. .+.+.+.+.+++.+.... . ...|.+..|.+++|+++++++....+..+.+
T Consensus 30 ~~~~i~~l~~g~p-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~ 106 (444)
T 3if2_A 30 SDQPVNMLGGGNP-AK--IDAVNELFLETYKALGNDNDTGKANSSAIISMANYSNPQGDSAFIDALVGFFNRHYDWNLTS 106 (444)
T ss_dssp SSSCCEECSCCCC-CC--CHHHHHHHHHHHHHHHSCSCTTCCCCHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCG
T ss_pred CchhhhccCCCCC-Cc--ccchHHHHHHHHHHHHhccccccccchhhhhhhccCCCCCCHHHHHHHHHHHHhhcCCCCCH
Confidence 47899 9999997 22 244456666666655422 1 2569999999999999999984332223347
Q ss_pred CCeeeEecCCchhHHHHHHHHHHHhCCCC--------------EEEEc-CCCChhhHHH------HhhCCCCeeeeeecC
Q 013839 116 GRSAGVQALSGTGACRLFAEFQRRFHPES--------------HIYFP-DPTWSNHHNI------WRDAQIPERTYHYYD 174 (435)
Q Consensus 116 ~~v~~~~t~gg~~a~~~~~~~~~~~~~gd--------------~Vlv~-~p~y~~~~~~------~~~~g~~~~~v~~~~ 174 (435)
++|+ +|+|+++|+.++ +..++.+|| +|+++ +|+|..+... +...|.+++.++..+
T Consensus 107 ~~i~--~t~G~t~al~~~--~~~l~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (444)
T 3if2_A 107 ENIA--LTNGSQNAFFYL--FNLFGGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQHFAAVLPHIDEVTHDG 182 (444)
T ss_dssp GGEE--EESSHHHHHHHH--HHHSSEEEECC-------CEEEEEEEESSSSCCGGGTTCCSSSCCEEECCCEEEEEEETT
T ss_pred HHEE--EecCcHHHHHHH--HHHHhCCCccccccccccccccceEEEeCCCCccchhhcccccchhhccCceEEeccccc
Confidence 8988 999999999998 666778888 78876 8999998763 445677777777621
Q ss_pred CC---CCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHH
Q 013839 175 PD---SKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQA 251 (435)
Q Consensus 175 ~~---~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~ 251 (435)
++ ++++|++.|++++.+..++++++++++||||||.+++.+++++|+++|++||+++|+||+|..+....... .
T Consensus 183 ~~g~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~---~ 259 (444)
T 3if2_A 183 EEGFFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMPFPNIIYS---D 259 (444)
T ss_dssp EEEEEEEECCHHHHHTCHHHHTTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCS---C
T ss_pred ccCccccCCCHHHHHHHHHhcCCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEEEECCCCCcccccccc---c
Confidence 11 25799999998843211678999999999999999999999999999999999999999997533211000 0
Q ss_pred HHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHH
Q 013839 252 IRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLW 331 (435)
Q Consensus 252 ~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~ 331 (435)
. .....+++++++|+||. +++|+|+||+++ +++ +++.+.........+++.+.|.++..++.... +
T Consensus 260 ~--~~~~~~~~i~~~S~sK~-~~~G~r~G~~~~---~~~----l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~----~ 325 (444)
T 3if2_A 260 A--HLNWDNNTILCFSLSKI-GLPGMRTGIIVA---DAK----VIEAVSAMNAVVNLAPTRFGAAIATPLVANDR----I 325 (444)
T ss_dssp C--CCCCCTTEEEEEESTTT-TCGGGCCEEEEC---CHH----HHHHHHHHHHHHHSSCCCHHHHHHHHHHHTSH----H
T ss_pred c--cccCCCCEEEEechhhc-cCCCCceEEEEE---CHH----HHHHHHHHHHhccCCCChHHHHHHHHHHHcCc----h
Confidence 0 01235789999999997 789999999964 888 88888777666667888999999999998764 2
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecC-----CCHHHHHHHhhhccEEEeCC---------
Q 013839 332 IDEVKI-MADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSG-----LTPYQVDRLAKEFHIYMTQD--------- 396 (435)
Q Consensus 332 ~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~-----~~~~~~~~ll~~~gI~i~pg--------- 396 (435)
.++..+ .++.++++++.+.+.|.+.-....+.+..+++|+|+|+. .+.+.+...++++||.+.||
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~~~~~~ 405 (444)
T 3if2_A 326 KQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPEGAIFLWLWFKDLPISTLDLYERLKAKGTLIVPSEYFFPGVDV 405 (444)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHSSSSSEEEECCCBSSEEEEEETTCSSCHHHHHHHHHHTTEECEEGGGSCTTCCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEecCCccEEEEEEcCCCCCCHHHHHHHHHHCCeEEecchhhcCCCCC
Confidence 334444 677888888888888876411113556678889999983 35555544557789999864
Q ss_pred -------C--cEEeccCCCCcHHHHHHHHHHHHHhhhh
Q 013839 397 -------G--RISMAGVTTGNVNYLANAIHEVTRSEQE 425 (435)
Q Consensus 397 -------g--Ris~~~~~~e~i~~~~~~l~~~l~~~~~ 425 (435)
+ ||+++. +++++++++++|++++++...
T Consensus 406 ~~~~~~~~~iRis~~~-~~e~i~~~l~~l~~~~~~~~~ 442 (444)
T 3if2_A 406 SDYQHAHECIRMSIAA-DEQTLIDGIKVIGEVVRELYD 442 (444)
T ss_dssp TTCSGGGSEEEEESSS-CHHHHHHHHHHHHHHHHHHHT
T ss_pred cccccCCCeEEEEEeC-CHHHHHHHHHHHHHHHHHHHc
Confidence 2 999987 899999999999999987653
No 69
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=100.00 E-value=3.4e-38 Score=303.73 Aligned_cols=314 Identities=15% Similarity=0.171 Sum_probs=245.4
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhH
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGA 129 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a 129 (435)
+++|+|+.|++ +. ++++.+ ++ .. ...|++. +.+++|+++++++ +.. +++|. +++|++++
T Consensus 29 ~~~i~l~~~~~-~~---~~~~~v------a~-~~-~~~Y~~~-~~~~lr~~la~~~-~~~-----~~~v~--~~~G~~~a 87 (356)
T 1fg7_A 29 NGDVWLNANEY-PT---AVEFQL------TQ-QT-LNRYPEC-QPKAVIENYAQYA-GVK-----PEQVL--VSRGADEG 87 (356)
T ss_dssp TCSEECSSCCC-SS---CCCCCC------CC-CC-TTSCCCS-SCHHHHHHHHHHH-TSC-----GGGEE--EESHHHHH
T ss_pred CceEEeeCCCC-CC---CCCHhH------hh-hh-hccCCCc-cHHHHHHHHHHHh-CCC-----hHHEE--EcCCHHHH
Confidence 36899999984 22 223222 22 22 4568775 5899999999998 332 56888 99999999
Q ss_pred HHHHHHHHHHhCCC-CEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCC
Q 013839 130 CRLFAEFQRRFHPE-SHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPT 208 (435)
Q Consensus 130 ~~~~~~~~~~~~~g-d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPt 208 (435)
+.++ +.+++.+| |+|+++.|+|..+...++..|++++.++. .+++++|+++++++++ +++++++++|||||
T Consensus 88 i~~~--~~~~~~~g~d~Vl~~~p~~~~~~~~~~~~g~~~~~v~~--~~~~~~d~~~l~~~i~----~~~~v~l~~p~npt 159 (356)
T 1fg7_A 88 IELL--IRAFCEPGKDAILYCPPTYGMYSVSAETIGVECRTVPT--LDNWQLDLQGISDKLD----GVKVVYVCSPNNPT 159 (356)
T ss_dssp HHHH--HHHHCCTTTCEEEECSSSCTHHHHHHHHHTCEEEECCC--CTTSCCCHHHHHTSCT----TEEEEEEESSCTTT
T ss_pred HHHH--HHHHhCCCCCEEEEeCCChHHHHHHHHHcCCEEEEeeC--CCCCCCCHHHHHHHhc----CCCEEEEeCCCCCC
Confidence 9988 66677899 99999999999999999999999999987 3457899999988774 57899999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecC
Q 013839 209 GVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVD 288 (435)
Q Consensus 209 G~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~ 288 (435)
|.+++.+++++|++.|+ +++++|+||+|.++... .++..+.+..+++++++|+||.+|++|+|+||+++ +
T Consensus 160 G~~~~~~~l~~l~~~~~-~~~~li~De~~~~~~~~------~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~---~ 229 (356)
T 1fg7_A 160 GQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQ------ASLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLA---N 229 (356)
T ss_dssp CCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGG------GCSGGGTTTCTTEEEEEESSSTTCCGGGCCEEEEE---C
T ss_pred CCCCCHHHHHHHHHhCC-CCCEEEEEccchhhcCC------CcHHHHHhhCCCEEEEecchHhhcCchhhhEEEEe---C
Confidence 99999999999999999 99999999999887621 11222223456799999999999999999999974 8
Q ss_pred hhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccC
Q 013839 289 SKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQ 368 (435)
Q Consensus 289 ~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 368 (435)
++ +++.+.+... ..+++.++|.++.++|.+.+ + +++++.+++++++++.+.+.|++++. +....+.
T Consensus 230 ~~----~~~~l~~~~~--~~~~~~~~~~a~~~~l~~~~----~-~~~~~~~~~~~~~~~~l~~~L~~~~~---~~~~~~~ 295 (356)
T 1fg7_A 230 EE----VINLLMKVIA--PYPLSTPVADIAAQALSPQG----I-VAMRERVAQIIAEREYLIAALKEIPC---VEQVFDS 295 (356)
T ss_dssp HH----HHHHHHHHSC--SSCSCHHHHHHHHHHTSHHH----H-HHHHHHHHHHHHHHHHHHHHHHHSTT---EEEECCC
T ss_pred HH----HHHHHHHhcC--CCCCCHHHHHHHHHHhcCcc----H-HHHHHHHHHHHHHHHHHHHHHHhCCC---ceEECCC
Confidence 88 8887777543 23688899999999997542 1 23778889999999999999998752 2233455
Q ss_pred cceeEecCC-CHHHHHHHhhhccEEEeC-C------C--cEEeccCCCCcHHHHHHHHHH
Q 013839 369 LGMFCFSGL-TPYQVDRLAKEFHIYMTQ-D------G--RISMAGVTTGNVNYLANAIHE 418 (435)
Q Consensus 369 ~g~~~~~~~-~~~~~~~ll~~~gI~i~p-g------g--Ris~~~~~~e~i~~~~~~l~~ 418 (435)
+|+|+|+.+ +.+.+.+.|.++||.+.+ | + ||+++ +++++++++++|++
T Consensus 296 ~~~~~~~~~~~~~~l~~~L~~~gI~v~~~g~~~~~~~~iRis~~--~~~e~~~~~~~l~~ 353 (356)
T 1fg7_A 296 ETNYILARFKASSAVFKSLWDQGIILRDQNKQPSLSGCLRITVG--TREESQRVIDALRA 353 (356)
T ss_dssp SSSEEEEEETTHHHHHHHHHHTTEECEECTTSTTCTTEEEEECC--CHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCHHHHHHHHHHCCEEEEECCCCCCCCCeEEEEeC--CHHHHHHHHHHHHh
Confidence 678889876 454443344679999998 5 2 99985 57888888888765
No 70
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=100.00 E-value=3.7e-38 Score=304.68 Aligned_cols=325 Identities=13% Similarity=0.072 Sum_probs=257.9
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCch
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~ 127 (435)
..+++|+|+.|++ +. +.++.+.+.+...+.......|++ .+..++|+++++++ +.. .++++. +|+||+
T Consensus 28 ~~~~~i~l~~~~~-~~---~~~~~v~~a~~~~~~~~~~~~y~~-~~~~~l~~~la~~~-g~~----~~~~i~--~~~g~t 95 (367)
T 3euc_A 28 DSHGLVKLDAMEN-PY---RLPPALRSELAARLGEVALNRYPV-PSSEALRAKLKEVM-QVP----AGMEVL--LGNGSD 95 (367)
T ss_dssp CCTTCEECCSSCC-CC---CCCHHHHHHHHHHHHHHHTTCSCC-CCHHHHHHHHHHHH-TCC----TTCEEE--EEEHHH
T ss_pred CCCCeeEccCCCC-CC---CCCHHHHHHHHHHhhhhhhhcCCC-CcHHHHHHHHHHHh-CCC----CcceEE--EcCCHH
Confidence 3468999999984 22 344444444444443222456866 58899999999998 331 156788 999999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCC
Q 013839 128 GACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNP 207 (435)
Q Consensus 128 ~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NP 207 (435)
+|+.++ +..++.+||+|+++.|+|.++...++..|++++.++. .+++.+|++++++++++ .+++++++++||||
T Consensus 96 ~a~~~~--~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~--~~~~~~d~~~l~~~l~~--~~~~~v~~~~~~np 169 (367)
T 3euc_A 96 EIISML--ALAAARPGAKVMAPVPGFVMYAMSAQFAGLEFVGVPL--RADFTLDRGAMLAAMAE--HQPAIVYLAYPNNP 169 (367)
T ss_dssp HHHHHH--HHHTCCTTCEEEEEESCSCCSCHHHHTTTCEEEEEEC--CTTSCCCHHHHHHHHHH--HCCSEEEEESSCTT
T ss_pred HHHHHH--HHHHcCCCCEEEEcCCCHHHHHHHHHHcCCeEEEecC--CCCCCCCHHHHHHHhhc--cCCCEEEEcCCCCC
Confidence 999988 6667889999999999999999999999999999998 33678999999999983 16788889999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc--CceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEE
Q 013839 208 TGVDPTEEQWREISYQFKVK--GHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSIL 285 (435)
Q Consensus 208 tG~~~~~~~l~~i~~~~~~~--~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~ 285 (435)
||.+++.+++++|+++|++| |+++|+||+|.++...+. .+ ..+..++++++.|+||. +++|+|+||+++
T Consensus 170 tG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~~---~~----~~~~~~~~i~~~s~sK~-~~~G~r~G~~~~- 240 (367)
T 3euc_A 170 TGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQESW---MS----RLTDFGNLLVMRTVSKL-GLAGIRLGYVAG- 240 (367)
T ss_dssp TCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCCS---GG----GGGTCTTEEEEEECCCT-TSCSCCEEEEEE-
T ss_pred CCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccch---HH----HHhhCCCEEEEecchhh-cccccCceeeee-
Confidence 99999999999999999999 999999999998775431 11 22445788999999999 899999999974
Q ss_pred ecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccc
Q 013839 286 CVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHI 365 (435)
Q Consensus 286 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 365 (435)
+++ +++.+..... ..+++.++|.++..+|... +++++.+++++++++.+.+.|++++. +...
T Consensus 241 --~~~----~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~l~~~~g---~~~~ 302 (367)
T 3euc_A 241 --DPQ----WLEQLDKVRP--PYNVNVLTEATALFALEHV-------AVLDEQAAQLRAERSRVAEGMAAHGG---VTVF 302 (367)
T ss_dssp --CHH----HHHHHGGGCC--SSCCCHHHHHHHHHHHTTH-------HHHHHHHHHHHHHHHHHHHHHHTSTT---CEEC
T ss_pred --CHH----HHHHHHHhCC--CCCCCHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHHhCCC---cEEC
Confidence 888 7777766543 4568899999999999872 66788889999999999999998732 4543
Q ss_pred ccCcceeEecCC-CHHHHHHHhhhccEEEeCCC----------cEEeccCCCCcHHHHHHHHHHHH
Q 013839 366 TNQLGMFCFSGL-TPYQVDRLAKEFHIYMTQDG----------RISMAGVTTGNVNYLANAIHEVT 420 (435)
Q Consensus 366 ~~~~g~~~~~~~-~~~~~~~ll~~~gI~i~pgg----------Ris~~~~~~e~i~~~~~~l~~~l 420 (435)
+.+|.|+|+.+ +.+.+.+.|+++||.+.+++ ||+++ +++++++++++|++++
T Consensus 303 -~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~iRis~~--~~~~i~~~~~~l~~~l 365 (367)
T 3euc_A 303 -PSAANFLLARVPDAAQTFDRLLARKVLIKNVSKMHPLLANCLRVTVS--TPEENAQFLEAFAASL 365 (367)
T ss_dssp -CCSSSEEEEECSCHHHHHHHHHTTTEECEECGGGCGGGTTEEEEECC--CHHHHHHHHHHHHHHT
T ss_pred -CCCCeEEEEECCCHHHHHHHHHHCCeEEEECCccCCCCCCEEEEecC--CHHHHHHHHHHHHHHh
Confidence 45667888877 55556555578999999762 99985 7899999999998875
No 71
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Probab=100.00 E-value=2.7e-39 Score=327.00 Aligned_cols=340 Identities=12% Similarity=0.066 Sum_probs=250.3
Q ss_pred eeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCC----CccccCCCeeeEecCCch
Q 013839 52 KINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKD----SDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 52 ~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~----~~~~~~~~v~~~~t~gg~ 127 (435)
+|+|++|.| .. .++..++++...+. ..+|+++.|.+++|+++++++.... .....+++|+ +|+|++
T Consensus 106 ~i~l~~g~~-~~----~~~~~~~al~~~~~---~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~--~t~G~~ 175 (546)
T 2zy4_A 106 SLSYVRDQL-GL----DPAAFLHEMVDGIL---GCNYPVPPRMLNISEKIVRQYIIREMGADAIPSESVNLF--AVEGGT 175 (546)
T ss_dssp HHHHHHHTS-CC----CHHHHHHHHHHHHH---TCSCCSSSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEE--EEEHHH
T ss_pred hhecccCCC-CC----CChHHHHHHHHhhh---cCCCCCCcCCHHHHHHHHHHHHHHhccCCCCCCCcceEE--EECCHH
Confidence 789999985 22 23345555544442 2569999999999999988763211 1112367888 999999
Q ss_pred hHHHHHHHHHH---HhCCCCEEEEcCCCChhhHHHHhh--CCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeC
Q 013839 128 GACRLFAEFQR---RFHPESHIYFPDPTWSNHHNIWRD--AQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHP 202 (435)
Q Consensus 128 ~a~~~~~~~~~---~~~~gd~Vlv~~p~y~~~~~~~~~--~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~ 202 (435)
+++.++...+. ++.+||+|++++|+|+.|...+.. .|++++.+++.++.+|.+|++.|++.+. +++++++++
T Consensus 176 eal~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~---~~~k~v~l~ 252 (546)
T 2zy4_A 176 AAMAYIFESLKLNGLLKAGDKVAIGMPVFTPYIEIPELAQYALEEVAINADPSLNWQYPDSELDKLKD---PAIKIFFCV 252 (546)
T ss_dssp HHHHHHHHHHHHTTSSCTTCEEEEEESCCHHHHHHHHSTTSCCEEEEEECBGGGTTBCCHHHHGGGGS---TTEEEEEEE
T ss_pred HHHHHHHHHhhhhhcCCCCCEEEEeCCCCccHHHHHHHcCCCcEEEEEecCcccCCCCCHHHHHHhhC---CCCeEEEEE
Confidence 99998832211 468999999999999999887554 4678888887444457899999988775 678999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHH--HhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCccc
Q 013839 203 SAHNPTGVDPTEEQWREISYQF--KVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVG 280 (435)
Q Consensus 203 ~p~NPtG~~~~~~~l~~i~~~~--~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG 280 (435)
+||||||.+++.+++++|+++| ++++++||+||+|.++.++. . ++... ..+++++++||||.+|++|+|+|
T Consensus 253 ~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~~--~---s~~~~--~~~~~i~~~S~SK~~g~~GlRiG 325 (546)
T 2zy4_A 253 NPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADDF--Q---SLFAI--CPENTLLVYSFSKYFGATGWRLG 325 (546)
T ss_dssp SSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTTC--C---CHHHH--CGGGEEEEEESTTTTTCGGGCEE
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhcccC--c---CHHHh--CCCCEEEEEeCccccCCCCcceE
Confidence 9999999999999999999999 78999999999999987542 1 22222 13689999999999999999999
Q ss_pred EEEEEecChhHHHHHHHH--------HHH-H-----------------------hhccccCCChhHHHHH-----HHHhC
Q 013839 281 CLSILCVDSKQAAAIRSQ--------IQQ-I-----------------------ARAMYGSPPVHGILLV-----ATILS 323 (435)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~--------l~~-~-----------------------~~~~~~~~~~~~q~~~-----~~~l~ 323 (435)
|+++ ++++..+.+... +.+ + ......+.+.+.|.++ .+++.
T Consensus 326 ~~~~--~~~~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~a~~all~ 403 (546)
T 2zy4_A 326 VVAA--HQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFALMD 403 (546)
T ss_dssp EEEE--ESSCHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHHHHHHHHC
T ss_pred EEEE--CCHHHHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHHHHHHHHh
Confidence 9974 344433332211 001 0 1123346788888764 24455
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCCC---------------------HHHH
Q 013839 324 DPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLT---------------------PYQV 382 (435)
Q Consensus 324 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~---------------------~~~~ 382 (435)
+.+ .+.++.++.++++++.+.+.|. .+ +...++++|||+|+++. .+++
T Consensus 404 ~~~------~~~~~~r~~~~~r~~~l~~~L~-~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~wl~~~~~~~~~l 472 (546)
T 2zy4_A 404 EAD------EYKHTLKQLIRRRETTLYRELG-MP----PLRDENAVDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGDML 472 (546)
T ss_dssp TTC------HHHHHHHHHHHHHHHHHHGGGT-SS----CCCCTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHH
T ss_pred ccH------HHHHHHHHHHHHHHHHHHHhcC-CC----cccCCCCeeEEEEEEHHHhhcccccHHHHHHhhccCCHHHHH
Confidence 433 6778888899999998888875 43 34567889999987642 2446
Q ss_pred HHHhhhccEEEeCCC---------cEEeccCCCCcHHHHHHHHHHHHHhhh
Q 013839 383 DRLAKEFHIYMTQDG---------RISMAGVTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 383 ~~ll~~~gI~i~pgg---------Ris~~~~~~e~i~~~~~~l~~~l~~~~ 424 (435)
.++++++||.+.||. ||+++..+++++++++++|++++++..
T Consensus 473 ~~ll~~~gV~v~pG~~F~~~~~~iRis~~~~~~e~i~~~~~~l~~~l~~~~ 523 (546)
T 2zy4_A 473 FRIADETGIVLLPGRGFGSNRPSGRASLANLNEYEYAAIGRALRKMADELY 523 (546)
T ss_dssp HHHHHHHSCCCEESSCTTCSSCEEEEESSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCEEEeCccccCCCCCeEEEEeccCCHHHHHHHHHHHHHHHHHHH
Confidence 677788999999972 999986678889999999999987655
No 72
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}
Probab=100.00 E-value=3.5e-36 Score=287.28 Aligned_cols=313 Identities=15% Similarity=0.120 Sum_probs=238.6
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCch
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~ 127 (435)
..++.|+|+.++. ..+ +++.+.+++...... ...|+ ..|.+++|+++++++ +.. +++|+ +++|++
T Consensus 14 ~~~~~i~l~~n~~----~~~-~~~~v~~a~~~~~~~-~~~y~-~~~~~~lr~~la~~~-~~~-----~~~i~--~t~G~~ 78 (337)
T 3p1t_A 14 AAAQAVCLAFNEN----PEA-VEPRVQAAIAAAAAR-INRYP-FDAEPRVMRKLAEHF-SCP-----EDNLM--LVRGID 78 (337)
T ss_dssp CCCCCEECSSCCC----CSC-CCHHHHHHHHHHGGG-TTSCC-TTHHHHHHHHHHHHH-TSC-----GGGEE--EESHHH
T ss_pred CCCCceEeeCCCC----CCC-CCHHHHHHHHHhhhh-hccCC-CCchHHHHHHHHHHh-CcC-----HHHEE--EeCCHH
Confidence 3467999999972 123 334455555554433 45684 578999999999998 332 56888 899999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCC
Q 013839 128 GACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNP 207 (435)
Q Consensus 128 ~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NP 207 (435)
+++.++ +..+ +||+|++++|+|..+...++..|++++.++. ++++++|++++++. .+++++++++||||
T Consensus 79 ~~l~~~--~~~~--~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~--~~~~~~d~~~l~~~-----~~~~~v~i~~p~np 147 (337)
T 3p1t_A 79 ECFDRI--SAEF--SSMRFVTAWPGFDGYRARIAVSGLRHFEIGL--TDDLLLDPNDLAQV-----SRDDCVVLANPSNP 147 (337)
T ss_dssp HHHHHH--HHHS--TTSEEEEESSSCSHHHHHHTTSCCEEEEECB--CTTSSBCHHHHTTC-----CTTEEEEEESSCTT
T ss_pred HHHHHH--HHhc--CCCeEEEeCCCcHHHHHHHHHcCCEEEEecC--CCCCCCCHHHHHhh-----cCCCEEEEeCCCCC
Confidence 999887 4433 9999999999999999999999999999987 34678999998764 35789999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEec
Q 013839 208 TGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCV 287 (435)
Q Consensus 208 tG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~ 287 (435)
||.+++.+++.+ +|+++++ +|+||+|.++.+.+.. .....+++++++|+||.+|++|+|+||+++
T Consensus 148 tG~~~~~~~l~~---l~~~~~~-~ivDea~~~~~~~~~~--------~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~--- 212 (337)
T 3p1t_A 148 TGQALSAGELDQ---LRQRAGK-LLIDETYVDYSSFRAR--------GLAYGENELVFRSFSKSYGLAGLRLGALFG--- 212 (337)
T ss_dssp TCCCCCHHHHHH---HHHHCSE-EEEECTTGGGSSCSSS--------CCCCBTTEEEEEESSSTTCCTTTCCEEEEC---
T ss_pred CCCCCCHHHHHH---HHHhCCc-EEEECCChhhcccccc--------ccccCCCEEEEeeCchhccCcchheEEEEe---
Confidence 999999886555 5667776 5669999987754311 113346789999999999999999999964
Q ss_pred ChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccc
Q 013839 288 DSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITN 367 (435)
Q Consensus 288 ~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 367 (435)
+++ +++.+.+.. ...+++.++|.++..+|.+. +...+.++++.++++.+.+.|++++ +.+.++
T Consensus 213 ~~~----~~~~l~~~~--~~~~~~~~~~~a~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~ 275 (337)
T 3p1t_A 213 PSE----LIAAMKRKQ--WFCNVGTLDLHALEAALDND-------RAREAHIAKTLAQRRRVADALRGLG----YRVASS 275 (337)
T ss_dssp CHH----HHHHHHTTS--CTTCSCHHHHHHHHHHHTCH-------HHHHHHHHHHHHHHHHHHHHHHHTT----CCBCCC
T ss_pred CHH----HHHHHHhhc--CCCCCCHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHHHHHHCc----CEECCC
Confidence 888 777777643 34578889999998899874 3344556667778888999999886 456677
Q ss_pred CcceeEecCCCHHHHHHHhhhccEEEeCCC--------cEEeccCCCCcHHHHHHHHHHHH
Q 013839 368 QLGMFCFSGLTPYQVDRLAKEFHIYMTQDG--------RISMAGVTTGNVNYLANAIHEVT 420 (435)
Q Consensus 368 ~~g~~~~~~~~~~~~~~ll~~~gI~i~pgg--------Ris~~~~~~e~i~~~~~~l~~~l 420 (435)
+++++.|...+.+.+.++++++||.+.||. |||++ +++++++++++|+++.
T Consensus 276 ~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~--~~~~~~~l~~al~~~~ 334 (337)
T 3p1t_A 276 EANFVLVENAAGERTLRFLRERGIQVKDAGQFGLHHHIRISIG--REEDNDRLLAALAEYS 334 (337)
T ss_dssp SSSEEEEECTTTHHHHHHHHHTTEECEEGGGGTCCSEEEEECC--CHHHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCHHHHHHHHHHCCeEEEECccCCCCCeEEEecC--CHHHHHHHHHHHHHHh
Confidence 777665555555566666678999999872 99985 5788999999988764
No 73
>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*
Probab=100.00 E-value=2.2e-40 Score=323.29 Aligned_cols=341 Identities=10% Similarity=0.045 Sum_probs=261.6
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhH
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGA 129 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a 129 (435)
+++|+|+.|+| +. +.++.+.+.+.+++... ...|++. .+++++++++++....+.+.++++|. +++|+++|
T Consensus 31 ~~~i~l~~~~~-~~---~~~~~v~~a~~~~~~~~-~~~y~~~--~~~l~~~la~~l~~~~g~~~~~~~v~--~~~g~~~a 101 (392)
T 3b1d_A 31 PQLLPAWIADM-DF---EVMPEVKQAIHDYAEQL-VYGYTYA--SDELLQAVLDWEKSEHQYSFDKEDIV--FVEGVVPA 101 (392)
Confidence 38899999996 43 33444444444444333 4567765 78999999999854433334467888 99999999
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCC-CCCcChHhHHHHhhcCCCCcEEEEeCCCCCCC
Q 013839 130 CRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPD-SKSLDFAALMDDIKNAPDSSFFLLHPSAHNPT 208 (435)
Q Consensus 130 ~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~-~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPt 208 (435)
+.++ +..++.+||+|+++.|+|.++...++..|++++.++..+++ +|.+|++.+++.+.+ ++++++++++|+|||
T Consensus 102 ~~~~--~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~--~~~~~v~~~~~~npt 177 (392)
T 3b1d_A 102 ISIA--IQAFTKEGEAVLINSPVYPPFARSVRLNNRKLVSNSLKEENGLFQIDFEQLENDIVE--NDVKLYLLCNPHNPG 177 (392)
Confidence 9988 66667899999999999999999999999999999873232 366899999998863 356788899999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhh-cCCeEEEEecccccccccCCcccEEEEEec
Q 013839 209 GVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLE-DEHLIGCAQSYAKSMGLYGHRVGCLSILCV 287 (435)
Q Consensus 209 G~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~ 287 (435)
|.+++.+++++|+++|++||+++|+||+|.++.+++ ....++..+.. ..+++++++|+||.+|++|+|+||++ ++
T Consensus 178 G~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g--~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~--~~ 253 (392)
T 3b1d_A 178 GRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFG--HEHVSFNTVSPDFKDFALVLSSATKTFNIAGTKNSYAI--IE 253 (392)
Confidence 999999999999999999999999999999998754 12233333322 15688999999999999999999996 33
Q ss_pred ChhHHHHHHHHHHHHhhcc-ccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hCCCCCcccc
Q 013839 288 DSKQAAAIRSQIQQIARAM-YGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEK-LGSSLNWEHI 365 (435)
Q Consensus 288 ~~~~~~~~~~~l~~~~~~~-~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~ 365 (435)
+++ +++.+.+..... +.+++.++|.++..+|.+.. +++++.+++++++++.+.+.|++ ++ .+.+.
T Consensus 254 ~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~------~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~~~ 320 (392)
T 3b1d_A 254 NPT----LCAQFKHQQLVNNHHEVSSLGYIATETAYRYGK------PWLVALKAVLEENIQFAVEYFAQEAP---RLKVM 320 (392)
Confidence 456 666676655433 24568888888888887532 56788889999999999999877 43 25677
Q ss_pred ccCcceeEecCCC-----H-HHHHHHhhhccEEEeCCC----------cEEeccCCCCcHHHHHHHHHHHHH
Q 013839 366 TNQLGMFCFSGLT-----P-YQVDRLAKEFHIYMTQDG----------RISMAGVTTGNVNYLANAIHEVTR 421 (435)
Q Consensus 366 ~~~~g~~~~~~~~-----~-~~~~~ll~~~gI~i~pgg----------Ris~~~~~~e~i~~~~~~l~~~l~ 421 (435)
.+++++++|+.+. . ++...+++++||.+.||. ||+++. +++++++++++|+++++
T Consensus 321 ~~~~~~~~~i~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~~-~~e~i~~~l~~l~~~l~ 391 (392)
T 3b1d_A 321 KPQGTYLIWLDFSDYGLTDDALFTLLHDQAKVILNRGSDYGSEGELHARLNIAA-PKSLVEEICKRIVCCLP 391 (392)
Confidence 8899999988652 2 234555557899999851 999876 78999999999988764
No 74
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Probab=100.00 E-value=3.1e-36 Score=290.97 Aligned_cols=337 Identities=13% Similarity=0.073 Sum_probs=249.2
Q ss_pred chhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccC
Q 013839 36 PINGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKE 115 (435)
Q Consensus 36 ~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~ 115 (435)
.+....+++.. +++++|||+.|.+ +. ..++. +.+++.+.... ...|++ .|.+++|+++++++ +.. +
T Consensus 11 ~~~~~~~~~~~-~~~~~idl~~~~~-~~---~~~~~-v~~a~~~~~~~-~~~y~~-~~~~~l~~~la~~~-~~~-----~ 76 (364)
T 1lc5_A 11 NIREPATVLGI-SPDQLLDFSANIN-PL---GMPVS-VKRALIDNLDC-IERYPD-ADYFHLHQALARHH-QVP-----A 76 (364)
T ss_dssp CCHHHHHHHTS-CGGGSEECSSCCC-TT---CCCHH-HHHHHHHTGGG-GGSCCC-TTCHHHHHHHHHHH-TSC-----G
T ss_pred cHHHHHHhcCC-CccceEEeccccC-CC---CCCHH-HHHHHHHHHHH-hhcCCC-CCHHHHHHHHHHHH-CcC-----H
Confidence 34455555532 4467999999984 22 33333 44444443322 456865 58999999999998 322 5
Q ss_pred CCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCC
Q 013839 116 GRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDS 195 (435)
Q Consensus 116 ~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~ 195 (435)
+++. +++|+++++.++ +..+ +||+|+++.|+|.++...++..|++++.++..+++++.+ ++++.+.+. ++
T Consensus 77 ~~v~--~~~g~~~al~~~--~~~~--~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~-l~~~~~~~~---~~ 146 (364)
T 1lc5_A 77 SWIL--AGNGETESIFTV--ASGL--KPRRAMIVTPGFAEYGRALAQSGCEIRRWSLREADGWQL-TDAILEALT---PD 146 (364)
T ss_dssp GGEE--EESSHHHHHHHH--HHHH--CCSEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCC-CTTHHHHCC---TT
T ss_pred HHEE--ECCCHHHHHHHH--HHHc--CCCeEEEeCCCcHHHHHHHHHcCCeEEEEeCCcccccch-hHHHHHhcc---CC
Confidence 6788 999999999988 4444 789999999999999999999999999998732233333 566666664 56
Q ss_pred cEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEeccccccccc
Q 013839 196 SFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLY 275 (435)
Q Consensus 196 ~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~ 275 (435)
++++++++||||||.+++.+++++|+++|++||+++|+||+|.++.+++. +.....+..+++++++|+||.+|++
T Consensus 147 ~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~-----~~~~~~~~~~~~i~~~s~sK~~~~~ 221 (364)
T 1lc5_A 147 LDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHET-----GFIPALKDNPHIWVLRSLTKFYAIP 221 (364)
T ss_dssp CCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCC-----CSGGGCTTCTTEEEEEESTTTTTCT
T ss_pred CCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCcEEEEECcChhhccCcc-----chhhHhccCCCEEEEEECchhhcCC
Confidence 78888999999999999999999999999999999999999998876421 1111223356789999999999999
Q ss_pred CCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013839 276 GHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEK 355 (435)
Q Consensus 276 G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 355 (435)
|+|+||++ +.+++ +++.+..... ..+++.++|.++..+|+.. +++++.+++++++++.+.+.|++
T Consensus 222 G~r~G~~~--~~~~~----~~~~l~~~~~--~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~L~~ 286 (364)
T 1lc5_A 222 GLRLGYLV--NSDDA----AMARMRRQQM--PWSVNALAALAGEVALQDS-------AWQQATWHWLREEGARFYQALCQ 286 (364)
T ss_dssp TTCCEEEE--CCCHH----HHHHHHHHSC--TTCSCHHHHHHHHHGGGCH-------HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccceEEEE--ECCHH----HHHHHHHhCC--CCCCCHHHHHHHHHHHhCc-------HHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999996 12888 7777776543 4578899999999999873 56788889999999999999987
Q ss_pred hCCCCCccccccCcceeEecCCC--H-HHHHHHhhhccEEEeCC--------C--cEEeccCCCCcHHHHHHHHHHHHHh
Q 013839 356 LGSSLNWEHITNQLGMFCFSGLT--P-YQVDRLAKEFHIYMTQD--------G--RISMAGVTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 356 ~~~~~~~~~~~~~~g~~~~~~~~--~-~~~~~ll~~~gI~i~pg--------g--Ris~~~~~~e~i~~~~~~l~~~l~~ 422 (435)
++ ++.+.++ .|.|+|+.+. . ++...++ ++||.+.|| + ||+++ +.+++++++++|++++++
T Consensus 287 ~~---~~~~~~~-~g~~~~~~~~~~~~~l~~~l~-~~gi~v~~g~~~~~~~~~~iRis~~--~~~~~~~l~~~l~~~~~~ 359 (364)
T 1lc5_A 287 LP---LLTVYPG-RANYLLLRCEREDIDLQRRLL-TQRILIRSCANYPGLDSRYYRVAIR--SAAQNERLLAALRNVLTG 359 (364)
T ss_dssp ST---TEEECCC-SSSEEEEEESCTTCCHHHHHH-TTTEECEECTTSTTCCTTEEEEECC--CHHHHHHHHHHHHHHC--
T ss_pred CC---CCEECCC-CCeEEEEECCCcHHHHHHHHH-HCCcEEeeCcccCCCCCCEEEEEeC--CHHHHHHHHHHHHHHhhc
Confidence 73 2455544 4557776542 2 3456554 679999975 1 99974 567888999999888765
Q ss_pred h
Q 013839 423 E 423 (435)
Q Consensus 423 ~ 423 (435)
+
T Consensus 360 ~ 360 (364)
T 1lc5_A 360 I 360 (364)
T ss_dssp -
T ss_pred c
Confidence 4
No 75
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A
Probab=100.00 E-value=2.1e-36 Score=292.70 Aligned_cols=326 Identities=14% Similarity=0.158 Sum_probs=244.2
Q ss_pred CeeeeecceecCCCCCcccchHHHHHHHHhcC--CCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchh
Q 013839 51 YKINLGVGAYRDDKGRPVVLQCVREAEAKIAG--SEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTG 128 (435)
Q Consensus 51 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~ 128 (435)
..|||+.|.+ +. +.++.+.+.+...+.. .....|++..+ .++++++++++....+...++++|. +++|+++
T Consensus 31 ~~idl~~~~~-~~---~~~~~v~~a~~~~~~~~~~~~~~y~~~~~-~~l~~~la~~l~~~~g~~~~~~~v~--~~~G~~~ 103 (369)
T 3cq5_A 31 VDIRLNTNEN-PY---PPSEALVADLVATVDKIATELNRYPERDA-VELRDELAAYITKQTGVAVTRDNLW--AANGSNE 103 (369)
T ss_dssp CSEECSSCCC-CS---CCCHHHHHHHHHHHHHHGGGTTSCCCTTC-HHHHHHHHHHHHHHHCCCCCGGGEE--EESHHHH
T ss_pred cceeccCCCC-CC---CCCHHHHHHHHHHHHhcccccccCCCccH-HHHHHHHHHhhhhcccCCCChHhEE--ECCChHH
Confidence 3499999985 22 3333444443333321 12456877666 7999999999732111112266888 8999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCC
Q 013839 129 ACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPT 208 (435)
Q Consensus 129 a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPt 208 (435)
++.++ +.+++.+||+|++++|+|..+...++..|++++.++. ++++++|++++++++.+ .+++++++++|||||
T Consensus 104 al~~~--~~~l~~~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~--~~~~~~d~~~l~~~i~~--~~~~~v~~~~~~npt 177 (369)
T 3cq5_A 104 ILQQL--LQAFGGPGRTALGFQPSYSMHPILAKGTHTEFIAVSR--GADFRIDMDVALEEIRA--KQPDIVFVTTPNNPT 177 (369)
T ss_dssp HHHHH--HHHHCSTTCEEEEEESSCTHHHHHHHHTTCEEEEEEC--CTTSSCCHHHHHHHHHH--HCCSEEEEESSCTTT
T ss_pred HHHHH--HHHhcCCCCEEEEcCCChHHHHHHHHHcCCEEEEecC--CcCCCCCHHHHHHHhhc--cCCCEEEEeCCCCCC
Confidence 99888 6667789999999999999999999999999999986 34578999999999973 156788889999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCC-eEEEEecccccccccCCcccEEEEEec
Q 013839 209 GVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEH-LIGCAQSYAKSMGLYGHRVGCLSILCV 287 (435)
Q Consensus 209 G~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~s~SK~~g~~G~RvG~~~~~~~ 287 (435)
|.+++.+++.+|++ .+++++|+||+|..+.++. +.....+..+ ++++++|+||.+|++|+|+||+++
T Consensus 178 G~~~~~~~l~~l~~---~~~~~li~De~~~~~~~~~------~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~--- 245 (369)
T 3cq5_A 178 GDVTSLDDVERIIN---VAPGIVIVDEAYAEFSPSP------SATTLLEKYPTKLVVSRTMSKAFDFAGGRLGYFVA--- 245 (369)
T ss_dssp CCCCCHHHHHHHHH---HCSSEEEEECTTGGGCCSC------CGGGGTTTCTTTEEEEEESSSTTSCGGGCCEEEEE---
T ss_pred CCCCCHHHHHHHHH---hCCCEEEEECCchhhcCCc------chHHHHhhCCCCEEEEEechHhcCCcccceEEEEe---
Confidence 99999886666555 4559999999999887531 1112223334 789999999999999999999974
Q ss_pred ChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccc
Q 013839 288 DSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITN 367 (435)
Q Consensus 288 ~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 367 (435)
+++ +++.+..... ..+++.+.|.++..+|.+. +++++.+++++++++.+.+.|++.+ +.+.++
T Consensus 246 ~~~----~~~~l~~~~~--~~~~~~~~~~a~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~ 308 (369)
T 3cq5_A 246 NPA----FIDAVMLVRL--PYHLSALSQAAAIVALRHS-------ADTLGTVEKLSVERVRVAARLEELG----YAVVPS 308 (369)
T ss_dssp CTH----HHHHHHTTSC--TTCSCHHHHHHHHHHHHTH-------HHHHTHHHHHHHHHHHHHHHHHHHT----CEEECC
T ss_pred CHH----HHHHHHHcCC--CCCCCHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHHhCC----CEECCC
Confidence 777 7777776443 3468889999988888763 4677888899999999999998876 445544
Q ss_pred CcceeEecCC--CHHHHHHHhhhccEEEeCCC-----cEEeccCCCCcHHHHHHHHHHHHH
Q 013839 368 QLGMFCFSGL--TPYQVDRLAKEFHIYMTQDG-----RISMAGVTTGNVNYLANAIHEVTR 421 (435)
Q Consensus 368 ~~g~~~~~~~--~~~~~~~ll~~~gI~i~pgg-----Ris~~~~~~e~i~~~~~~l~~~l~ 421 (435)
.|.|+|+.+ +.+.+.+.+.++||.+.|+| |++++ +++++++++++|+++++
T Consensus 309 -~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~iRis~~--~~~~i~~~~~~l~~~~~ 366 (369)
T 3cq5_A 309 -ESNFVFFGDFSDQHAAWQAFLDRGVLIRDVGIAGHLRTTIG--VPEENDAFLDAAAEIIK 366 (369)
T ss_dssp -SSSEEEEECCSSHHHHHHHHHHTTEECBCCSCTTEEEEECC--CHHHHHHHHHHHHHHHT
T ss_pred -CCeEEEEECCCCHHHHHHHHHHCCEEEEECCCCCeEEEEeC--CHHHHHHHHHHHHHHHh
Confidence 456777765 45545444467999999973 99985 67889999999988764
No 76
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=100.00 E-value=7.6e-36 Score=287.66 Aligned_cols=322 Identities=11% Similarity=0.077 Sum_probs=244.9
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCch
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~ 127 (435)
+++++|||+.|.+ +. +.++.+.+.+.+.+.. ...|+ ..+..++|+++++++ +.. ++++. +++||+
T Consensus 24 ~~~~~idl~~~~~-~~---~~~~~v~~a~~~~~~~--~~~y~-~~~~~~l~~~la~~~-~~~-----~~~i~--~~~g~t 88 (361)
T 3ftb_A 24 KGRELLDYSSNIN-PL---GIPKSFLNNIDEGIKN--LGVYP-DVNYRRLNKSIENYL-KLK-----DIGIV--LGNGAS 88 (361)
T ss_dssp ----CEETTCCCC-TT---CSCHHHHTTHHHHHHG--GGSCC-CTTCHHHHHHHHHHH-TCC-----SCEEE--EESSHH
T ss_pred CCCCEEEecCCCC-CC---CCCHHHHHHHHHHHHH--hcCCC-CccHHHHHHHHHHHh-CCC-----cceEE--EcCCHH
Confidence 5678999999984 22 3333333333333332 34574 478899999999998 322 56788 899999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCC
Q 013839 128 GACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNP 207 (435)
Q Consensus 128 ~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NP 207 (435)
+|+.++ +..+ |+|+++.|+|.++...++..|++++.++.. .+.++++++++++++ + ++++++++||||
T Consensus 89 ~al~~~--~~~~----d~vi~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~l~~~l~---~-~~~v~i~~p~np 156 (361)
T 3ftb_A 89 EIIELS--ISLF----EKILIIVPSYAEYEINAKKHGVSVVFSYLD--ENMCIDYEDIISKID---D-VDSVIIGNPNNP 156 (361)
T ss_dssp HHHHHH--HTTC----SEEEEEESCCTHHHHHHHHTTCEEEEEECC--TTSCCCHHHHHHHTT---T-CSEEEEETTBTT
T ss_pred HHHHHH--HHHc----CcEEEecCChHHHHHHHHHcCCeEEEeecC--cccCCCHHHHHHhcc---C-CCEEEEeCCCCC
Confidence 999888 4433 999999999999999999999999999983 334678899999997 4 789999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEec
Q 013839 208 TGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCV 287 (435)
Q Consensus 208 tG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~ 287 (435)
||.+++.+++++|+++|++||+++|+||+|.++.++. ..+.....+..+++++++|+||.+|++|+|+||++ +.
T Consensus 157 tG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~----~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~g~~~--~~ 230 (361)
T 3ftb_A 157 NGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGDP----SSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYGI--TN 230 (361)
T ss_dssp TTBCCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCCT----TSSSGGGTTTCSSEEEEEESSSTTSCGGGCCEEEE--ES
T ss_pred CCCCCCHHHHHHHHHHhhhcCCEEEEECcchhhcCCc----ccchhHhcccCCCEEEEeeChhhcCCCCcceeEEE--eC
Confidence 9999999999999999999999999999999888751 11222233445788999999999999999999996 23
Q ss_pred ChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcc-ccc
Q 013839 288 DSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWE-HIT 366 (435)
Q Consensus 288 ~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~ 366 (435)
+++ +++.+..... ..+++.++|.++..+|.+. +++++.+++++++++.+.+.|++++. +. ..+
T Consensus 231 ~~~----~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~~~~ 294 (361)
T 3ftb_A 231 NKE----IAAKIKAKQN--PWNINCFAEMAAINCLKDT-------NYIEESLLWIKKERKRFIEELNKIGF---IKRVFS 294 (361)
T ss_dssp CHH----HHHHHHTTSC--TTCSCHHHHHHHHHTSSCH-------HHHHHHHHHHHHHHHHHHHHHHHSSS---EEEEEC
T ss_pred CHH----HHHHHHhhCC--CCCCCHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHHhCCC---CceecC
Confidence 888 8887776543 3578899999999999863 66788899999999999999998752 55 555
Q ss_pred cCcceeEecCC---CHHHHHHHhhhccEEEeCC--------C--cEEeccCCCCcHHHHHHHHHHHHH
Q 013839 367 NQLGMFCFSGL---TPYQVDRLAKEFHIYMTQD--------G--RISMAGVTTGNVNYLANAIHEVTR 421 (435)
Q Consensus 367 ~~~g~~~~~~~---~~~~~~~ll~~~gI~i~pg--------g--Ris~~~~~~e~i~~~~~~l~~~l~ 421 (435)
+.+ .|+|+.+ +.+.+...|.++||.+.|| + ||+++ +.++++++.++|+++.+
T Consensus 295 ~~~-~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis~~--~~~~~~~l~~~l~~~~~ 359 (361)
T 3ftb_A 295 PHA-NFVLCRLENISGEKLYDSLLKEDIVIRRCCNFIGLDDSFVRFAIK--DEKKNTKFLRALKGVEN 359 (361)
T ss_dssp CSS-SEEEEEESSSCHHHHHHHHHTTTEECEECTTSTTCCTTEEEEECC--CHHHHHHHHHHHHHHHH
T ss_pred CCC-eEEEEEcCCCCHHHHHHHHHHCCeEEeeCccCCCCCCCEEEEEcC--CHHHHHHHHHHHHHHHh
Confidence 555 4666643 4554533345579999986 1 99984 56778888888887664
No 77
>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*
Probab=100.00 E-value=6.9e-38 Score=305.26 Aligned_cols=326 Identities=12% Similarity=0.064 Sum_probs=239.1
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhc--CC--CCCCCCCCccc-----HHHHHHHHHhHcCCCCccccC-CC
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIA--GS--EFLESISASVS-----TKMVEESVKLVYGKDSDVVKE-GR 117 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~Y~~~~g~-----~~lr~~ia~~l~~~~~~~~~~-~~ 117 (435)
.++++|+|+.|.| +. +.+ +.+.++..... .. ...+|++..|. ++||+++++++. ..+..+.+ ++
T Consensus 20 ~~~~~i~l~~g~p-~~---~~~-~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~~~~~~lr~aia~~~~-~~g~~~~~~~~ 93 (391)
T 3bwn_A 20 MSDFVVNLDHGDP-TA---YEE-YWRKMGDRCTVTIRGCDLMSYFSDMTNLCWFLEPELEDAIKDLHG-VVGNAATEDRY 93 (391)
T ss_dssp TTTSCEECSSCCC-GG---GHH-HHHHTGGGSCEEECTTTTCSSCSCTTSSSTTSCHHHHHHHHHHHH-HHCSBCCSSSE
T ss_pred CCCCeeEcCCCCC-CC---CCC-HHHHHhHHHHhhcCccchhhcCCCCCCcccccCHHHHHHHHHHHH-hcCCCCCCCCe
Confidence 4568899999996 32 333 33333331111 11 35679999998 999999999984 22223334 58
Q ss_pred eeeEecCCchhHHHHHHHHHHHhCCCC----EEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCC
Q 013839 118 SAGVQALSGTGACRLFAEFQRRFHPES----HIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAP 193 (435)
Q Consensus 118 v~~~~t~gg~~a~~~~~~~~~~~~~gd----~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~ 193 (435)
|+ +|+|+++++.++ +.+++.+|| +|++++|+|..+...++..|++++.+++ +.+ +++ .
T Consensus 94 i~--~t~G~~~al~~~--~~~l~~~Gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~-d~~--~l~--------~--- 155 (391)
T 3bwn_A 94 IV--VGTGSTQLCQAA--VHALSSLARSQPVSVVAAAPFYSTYVEETTYVRSGMYKWEG-DAW--GFD--------K--- 155 (391)
T ss_dssp EE--EEEHHHHHHHHH--HHHHHHTSSSSSEEEEECSSCCTHHHHHHHTTCBTTEEEEE-EST--TCC--------C---
T ss_pred EE--EeCChHHHHHHH--HHHhcCCCCCCcceEEEcCCCchhHHHHHHHcCCeEEEecC-CHH--HcC--------C---
Confidence 88 999999999998 666778999 9999999999999999999999998887 333 222 1
Q ss_pred CCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEeccccccc
Q 013839 194 DSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMG 273 (435)
Q Consensus 194 ~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g 273 (435)
++++++++++||||||.+++ +|++.+++++++||+||+|.. .. ..++ ....+++|+++||||.+|
T Consensus 156 ~~~k~v~l~~p~NPtG~~~~-----~l~~~~~~~~~~ii~De~y~~---~~----~~~l---~~~~~~~i~~~S~SK~~g 220 (391)
T 3bwn_A 156 KGPYIELVTSPNNPDGTIRE-----TVVNRPDDDEAKVIHDFAYYW---PH----YTPI---TRRQDHDIMLFTFSKITG 220 (391)
T ss_dssp CSCEEEEEESSCTTTCCCCC-----CCC-----CCCEEEEECTTCS---TT----TSCC---CCCBCCSEEEEEHHHHHS
T ss_pred CCCEEEEECCCCCCCchhHH-----HHHHHhhcCCCEEEEeCCCCC---CC----CCcc---ccCCCCeEEEEechhhcC
Confidence 46789999999999999996 354422223399999999963 11 0111 113468999999999999
Q ss_pred ccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhH-H---HHHHHHHHHHHHHHHHHHHH
Q 013839 274 LYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLK-S---LWIDEVKIMADRIQRKRTTL 349 (435)
Q Consensus 274 ~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~-~---~~~~~~~~~~~~~~~~~~~l 349 (435)
++|+|+||++ +.+++ +++.+.+.......+++.++|.++..+|.+.... . .+.+++++.++.++++++.+
T Consensus 221 ~~GlRiG~~~--~~~~~----l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 294 (391)
T 3bwn_A 221 HAGSRIGWAL--VKDKE----VAKKMVEYIIVNSIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKL 294 (391)
T ss_dssp CGGGCEEEEE--ECCHH----HHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHH
T ss_pred CCccceEEEE--ecCHH----HHHHHHHHhcccccCCCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHHHHHH
Confidence 9999999996 33677 8888887766556789999999999998754100 0 01357888999999999999
Q ss_pred HHHHHhhCCCCCccccc-------------cCcceeEecCCC-HHHHHHHhhhccEEEeCC-------C--cEEeccCCC
Q 013839 350 RQNLEKLGSSLNWEHIT-------------NQLGMFCFSGLT-PYQVDRLAKEFHIYMTQD-------G--RISMAGVTT 406 (435)
Q Consensus 350 ~~~l~~~~~~~~~~~~~-------------~~~g~~~~~~~~-~~~~~~ll~~~gI~i~pg-------g--Ris~~~~~~ 406 (435)
.+.|++++. +.+.. +++|+|+|+++. .+++..+++++||.+.|| + |||++. ++
T Consensus 295 ~~~L~~~~~---~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~~~~~~~~l~~~gV~v~pg~~fg~~~~~iRis~~~-~~ 370 (391)
T 3bwn_A 295 REVVKESDA---FTLPKYPEAFCNYFGKSLESYPAFAWLGTKEETDLVSELRRHKVMSRAGERCGSDKKHVRVSMLS-RE 370 (391)
T ss_dssp HHHHHTCSS---EECCCCCCEEETTTTEEECCCCSEEEEEESSSCCHHHHHHHTTEECEEGGGGTCCTTEEEEESCS-CH
T ss_pred HHHHHhCCC---cccccCCccccccccccCCCcceEEEecCCcHHHHHHHHHHCCEEEccCCCCCCCCCEEEEEecC-CH
Confidence 999998731 33322 456779999774 456666778899999985 2 999987 88
Q ss_pred CcHHHHHHHHHHHHHh
Q 013839 407 GNVNYLANAIHEVTRS 422 (435)
Q Consensus 407 e~i~~~~~~l~~~l~~ 422 (435)
+++++++++|++++++
T Consensus 371 e~i~~~~~~L~~~~~~ 386 (391)
T 3bwn_A 371 DVFNVFLERLANMKLI 386 (391)
T ss_dssp HHHHHHHHHHHSCC--
T ss_pred HHHHHHHHHHHHHHHh
Confidence 8899999999987754
No 78
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}
Probab=100.00 E-value=2.5e-35 Score=284.20 Aligned_cols=317 Identities=16% Similarity=0.158 Sum_probs=241.0
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCC--CCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCC
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGS--EFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALS 125 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~g 125 (435)
+++++|+|+.|++ +. +.++.+.+.+...+..+ ....|++. +..++|+++++++ +. +++++. +++|
T Consensus 24 ~~~~~i~l~~~~~-~~---~~~~~v~~a~~~~~~~~~~~~~~y~~~-~~~~lr~~la~~~-g~-----~~~~i~--~t~g 90 (360)
T 3hdo_A 24 DIASWIKLNTNEN-PY---PPSPEVVKAILEELGPDGAALRIYPSA-SSQKLREVAGELY-GF-----DPSWII--MANG 90 (360)
T ss_dssp CCTTSEECSSCCC-SS---CCCHHHHHHHHHHHTTTCGGGGSCCCS-SCHHHHHHHHHHH-TC-----CGGGEE--EESS
T ss_pred cccceeeccCCCC-CC---CCCHHHHHHHHHHHhcccchhhcCCCC-chHHHHHHHHHHh-Cc-----CcceEE--EcCC
Confidence 3468999999995 32 44444544444444432 14557654 6799999999998 32 256888 9999
Q ss_pred chhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCC
Q 013839 126 GTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAH 205 (435)
Q Consensus 126 g~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~ 205 (435)
|++|+.++ +..++.+||+|+++.|+|.++...++..|++++.++.. +++.+ +++++.+ +++++++++|+
T Consensus 91 ~~~al~~~--~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~--~~~~~--~~l~~~~-----~~~~v~i~~p~ 159 (360)
T 3hdo_A 91 SDEVLNNL--IRAFAAEGEEIGYVHPSYSYYGTLAEVQGARVRTFGLT--GDFRI--AGFPERY-----EGKVFFLTTPN 159 (360)
T ss_dssp HHHHHHHH--HHHHCCTTCEEEEESSSCTHHHHHHHHHTCEEEEECBC--TTSSB--TTCCSSB-----CSSEEEEESSC
T ss_pred HHHHHHHH--HHHHhCCCCEEEEcCCChHHHHHHHHHCCCEEEEeeCC--CCCCH--HHHHhhc-----CCCEEEEeCCC
Confidence 99999998 67778999999999999999999999999999999882 33444 4443322 24588999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEE
Q 013839 206 NPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSIL 285 (435)
Q Consensus 206 NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~ 285 (435)
||||.+++.+ ++.++|+++|+++|+||+|.++.... ..+. .+..+++++++|+||.+|++|+|+||+++
T Consensus 160 nptG~~~~~~---~l~~l~~~~~~~li~De~~~~~~~~~----~~~~---~~~~~~~i~~~s~sK~~g~~G~r~G~~~~- 228 (360)
T 3hdo_A 160 APLGPSFPLE---YIDELARRCAGMLVLDETYAEFAESN----ALEL---VRRHENVVVTRTLSKSYSLAGMRIGLAIA- 228 (360)
T ss_dssp TTTCCCCCHH---HHHHHHHHBSSEEEEECTTGGGSSCC----CTHH---HHHCSSEEEEEESTTTTSCTTSCCEEEEC-
T ss_pred CCCCCCcCHH---HHHHHHHHCCCEEEEECChHhhCCcc----hhHH---hccCCCEEEEecchHhhcCCccceeeEee-
Confidence 9999999987 45666788999999999998874321 1122 23357899999999999999999999963
Q ss_pred ecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccc
Q 013839 286 CVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHI 365 (435)
Q Consensus 286 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 365 (435)
+++ +++.+..... ..+++.++|.++..+|.+. +++++.+++++++++.+.+.|++++ +.+.
T Consensus 229 --~~~----~~~~~~~~~~--~~~~~~~~~~a~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~L~~~~----~~~~ 289 (360)
T 3hdo_A 229 --RPE----VIAALDKIRD--HYNLDRLAQAACVAALRDQ-------AYLSECCRRIRETREWFTTELRSIG----YDVI 289 (360)
T ss_dssp --CHH----HHHHHHHHSC--SCCSCHHHHHHHHHHHHCH-------HHHHHHHHHHHHHHHHHHHHHHHTT----CEEC
T ss_pred --CHH----HHHHHHHhCC--CCCCCHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHHHCC----CEEc
Confidence 888 8888877543 3578899999999999863 5678888999999999999999885 4455
Q ss_pred ccCcceeEecCC---CHHHHHHHhhhccEEEeCCC--------cEEeccCCCCcHHHHHHHHHHHHH
Q 013839 366 TNQLGMFCFSGL---TPYQVDRLAKEFHIYMTQDG--------RISMAGVTTGNVNYLANAIHEVTR 421 (435)
Q Consensus 366 ~~~~g~~~~~~~---~~~~~~~ll~~~gI~i~pgg--------Ris~~~~~~e~i~~~~~~l~~~l~ 421 (435)
++. +.|+|+.+ +.+.+.+.|.++||.+.+++ ||+++ +++++++++++|+++.+
T Consensus 290 ~~~-~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~iRis~~--~~~e~~~l~~al~~~~~ 353 (360)
T 3hdo_A 290 PSQ-GNYLFATPPDRDGKRVYDGLYARKVLVRHFSDPLLAHGMRISIG--TREEMEQTLAALKEIGE 353 (360)
T ss_dssp CCS-SSEEEEECTTCCHHHHHHHHHHTTEECBCCCSTTTTTSEEEECC--CHHHHHHHHHHHHHHHC
T ss_pred CCC-ccEEEEECCCCCHHHHHHHHHHCCEEEEECCCCCCCCEEEEEcC--CHHHHHHHHHHHHHHhc
Confidence 444 45666643 55556555567899999852 99985 68999999999988754
No 79
>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*
Probab=100.00 E-value=1.5e-35 Score=282.81 Aligned_cols=310 Identities=14% Similarity=0.163 Sum_probs=234.3
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhH
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGA 129 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a 129 (435)
++.|+|+.|.+ +. +.++.+.+.+...+.......|++ .+.+++|+++++++... +.+++++. +++|++++
T Consensus 19 ~~~i~l~~~~~-~~---~~~~~v~~a~~~~~~~~~~~~y~~-~~~~~lr~~la~~~~~~---~~~~~~v~--~~~G~~~a 88 (335)
T 1uu1_A 19 RDKTYLALNEN-PF---PFPEDLVDEVFRRLNSDALRIYYD-SPDEELIEKILSYLDTD---FLSKNNVS--VGNGADEI 88 (335)
T ss_dssp CCSEEESSCCC-SS---CCCHHHHHHHHHTCCGGGGGSCCC-SSCHHHHHHHHHHHTCS---SCCGGGEE--EESSHHHH
T ss_pred CcceECCCCCC-CC---CCCHHHHHHHHHHhhhhhhhcCCC-CchHHHHHHHHHHcCCC---CCCHHHEE--EcCChHHH
Confidence 46899999985 22 334444444444442222455765 47999999999999432 23367888 99999999
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCC
Q 013839 130 CRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTG 209 (435)
Q Consensus 130 ~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG 209 (435)
+.++ +..+ ||+|+++ |+|.++...++..|++++.++. ++++++|++++ ++++++++++||||||
T Consensus 89 l~~~--~~~~---gd~Vl~~-p~y~~~~~~~~~~g~~~~~v~~--~~~~~~d~~~l--------~~~~~v~l~~p~nptG 152 (335)
T 1uu1_A 89 IYVM--MLMF---DRSVFFP-PTYSCYRIFAKAVGAKFLEVPL--TKDLRIPEVNV--------GEGDVVFIPNPNNPTG 152 (335)
T ss_dssp HHHH--HHHS---SEEEECS-SSCHHHHHHHHHHTCEEEECCC--CTTSCCCCCCC--------CTTEEEEEESSCTTTC
T ss_pred HHHH--HHHh---CCcEEEC-CCcHHHHHHHHHcCCeEEEecc--CCCCCCCHHHc--------CCCCEEEEeCCCCCCC
Confidence 9888 4443 8999999 9999999999999999999987 34578888887 2578898899999999
Q ss_pred CCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecCh
Q 013839 210 VDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDS 289 (435)
Q Consensus 210 ~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~ 289 (435)
.+++.+++++|++.| + ++|+||+|.++.... .....+..+++++++|+||.+|++|+|+||+++ ++
T Consensus 153 ~~~~~~~l~~l~~~~---~-~li~De~~~~~~~~~-------~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~---~~ 218 (335)
T 1uu1_A 153 HVFEREEIERILKTG---A-FVALDEAYYEFHGES-------YVDFLKKYENLAVIRTFSKAFSLAAQRVGYVVA---SE 218 (335)
T ss_dssp CCCCHHHHHHHHHTT---C-EEEEECTTHHHHCCC-------CGGGGGTCSSEEEEEESTTTTTCGGGCCEEEEE---CH
T ss_pred CCCCHHHHHHHHHhC---C-EEEEECcchhhcchh-------HHHHhhhCCCEEEEecchhhcCCcccCeEEEEe---CH
Confidence 999999888888877 7 899999998776421 111123456899999999999999999999974 88
Q ss_pred hHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCc
Q 013839 290 KQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQL 369 (435)
Q Consensus 290 ~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 369 (435)
+ +++.+..... ..+++.++|.++..+|.+. ++.++.+++++++++.+.+.|+++|. .+. +.+
T Consensus 219 ~----~~~~l~~~~~--~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~L~~~g~----~~~-~~~ 280 (335)
T 1uu1_A 219 K----FIDAYNRVRL--PFNVSYVSQMFAKVALDHR-------EIFEERTKFIVEERERMKSALREMGY----RIT-DSR 280 (335)
T ss_dssp H----HHHHHHHHSC--TTCSCHHHHHHHHHHHHTH-------HHHHHHHHHHHHHHHHHHHHHHHHTC----CBC-CCC
T ss_pred H----HHHHHHHhcC--CCCcCHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHHHHHHCCc----EEc-CCC
Confidence 8 7777776543 2478899999999998763 45677888899999999999988863 343 445
Q ss_pred ceeEecCCC---HHHHHHHhhhccEEEeCCC---cEEeccCCCCcHHHHHHHHHHH
Q 013839 370 GMFCFSGLT---PYQVDRLAKEFHIYMTQDG---RISMAGVTTGNVNYLANAIHEV 419 (435)
Q Consensus 370 g~~~~~~~~---~~~~~~ll~~~gI~i~pgg---Ris~~~~~~e~i~~~~~~l~~~ 419 (435)
|+|+|+.+. .+.+...|.++||.+.|+. ||+++. .+++++++++|+++
T Consensus 281 ~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~iRis~~~--~~~i~~~~~~l~~~ 334 (335)
T 1uu1_A 281 GNFVFVFMEKEEKERLLEHLRTKNVAVRSFREGVRITIGK--REENDMILRELEVF 334 (335)
T ss_dssp SSEEEEECCTHHHHHHHHHHHHHTEEEEEETTEEEEECCC--HHHHHHHHHHHHCC
T ss_pred CeEEEEECCCCCHHHHHHHHHHCCEEEEECCCeEEEEeCC--HHHHHHHHHHHHhh
Confidence 678888763 3334333456899999753 999854 56788888888653
No 80
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*
Probab=100.00 E-value=2.9e-36 Score=296.86 Aligned_cols=328 Identities=11% Similarity=0.056 Sum_probs=244.4
Q ss_pred CCCeeeeecceecCCCCCcccchHHHHHHHHhc-CC-CCCCCCCCc-c---cHHHHHHHHHhHcCCCCccccCCCeeeEe
Q 013839 49 SPYKINLGVGAYRDDKGRPVVLQCVREAEAKIA-GS-EFLESISAS-V---STKMVEESVKLVYGKDSDVVKEGRSAGVQ 122 (435)
Q Consensus 49 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~Y~~~~-g---~~~lr~~ia~~l~~~~~~~~~~~~v~~~~ 122 (435)
...+|+|+.|+| +. +.+..+.+.+...+. .+ ...+|++.. | .++||+++++++...+...+++++|+ +
T Consensus 55 ~~~~i~l~~g~~-~~---~~~~~v~~a~~~~l~~~~~~~~~Y~~~~~G~~~~~~lr~aia~~~~~~~~~~~~~~~iv--~ 128 (427)
T 2hox_A 55 QGCSADVASGDG-LF---LEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIV--F 128 (427)
T ss_dssp TTCCEECCSCCC-GG---GHHHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEE--E
T ss_pred CCceEEecCcCC-CC---CCCHHHHHhHHhhhhcCCcccccCCCCCCCccchHHHHHHHHHHHHHhCCcCCCCCEEE--E
Confidence 357899999996 32 333333333333442 22 123499888 9 99999999999954333334478888 9
Q ss_pred cCCchhHHHHHHHHHHH--------hCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCC
Q 013839 123 ALSGTGACRLFAEFQRR--------FHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPD 194 (435)
Q Consensus 123 t~gg~~a~~~~~~~~~~--------~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~ 194 (435)
|+|+++++.++ +.++ +.+||+|++++|+|..+...++..|++++.+ .+|++.|++++. +
T Consensus 129 t~G~~~al~~~--~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~g~~~~~~--------~~d~~~l~~~~~---~ 195 (427)
T 2hox_A 129 GVGVTQLIHGL--VISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGYVW--------AGNAANYVNVSN---P 195 (427)
T ss_dssp ESHHHHHHHHH--HHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCBTTEEE--------EEEGGGGTTCSC---G
T ss_pred eCCHHHHHHHH--HHHHhhccccccCCCCCEEEEeCCCcccHHHHHHHcCCeeeee--------cCCHHHHHHhhc---C
Confidence 99999999998 7777 8899999999999999999999999887643 457788887776 5
Q ss_pred CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccc
Q 013839 195 SSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGL 274 (435)
Q Consensus 195 ~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~ 274 (435)
+++++++++||||||.+++ +. ++ ++..|+|++|.+ + ..++..+. .+++|+++||||.+|+
T Consensus 196 ~~k~v~l~~p~NPtG~~~~-~~-------l~--~~~~i~d~~~~~----~----~~s~~~~~--~~~~i~~~S~SK~~g~ 255 (427)
T 2hox_A 196 EQYIEMVTSPNNPEGLLRH-AV-------IK--GCKSIYDMVYYW----P----HYTPIKYK--ADEDILLFTMSKFTGH 255 (427)
T ss_dssp GGEEEEEESSCTTTCCCCC-CS-------ST--TCEEEEECTTCS----T----TTSCCCSC--BCCSEEEEEHHHHTSC
T ss_pred CceEEEEcCCCCCcccccH-HH-------Hc--CCCEEEeecccC----C----CCCccccC--CCceEEEEeChhcCCC
Confidence 6899999999999999999 42 22 456788887642 1 11111121 4689999999999999
Q ss_pred cCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChh-hHH----HHHHHHHHHHHHHHHHHHHH
Q 013839 275 YGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPN-LKS----LWIDEVKIMADRIQRKRTTL 349 (435)
Q Consensus 275 ~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~-l~~----~~~~~~~~~~~~~~~~~~~l 349 (435)
+|+|+||++ +++++ +++.+.+.......+++.++|.++..+|.+.. ..+ .++++++..+++++++++.+
T Consensus 256 ~G~RiG~~~--~~~~~----l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 329 (427)
T 2hox_A 256 SGSRFGWAL--IKDES----VYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNI 329 (427)
T ss_dssp GGGCCEEEE--ECCHH----HHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEE--ECCHH----HHHHHHHHHHhcCCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHHH
Confidence 999999996 43477 88888887766667899999999988887531 000 12356778889999999999
Q ss_pred HHHHHhh-CCC-------C---CccccccCcceeEecCCC---HHHHHHHhhhccEEEeCC-------C--cEEeccCCC
Q 013839 350 RQNLEKL-GSS-------L---NWEHITNQLGMFCFSGLT---PYQVDRLAKEFHIYMTQD-------G--RISMAGVTT 406 (435)
Q Consensus 350 ~~~l~~~-~~~-------~---~~~~~~~~~g~~~~~~~~---~~~~~~ll~~~gI~i~pg-------g--Ris~~~~~~ 406 (435)
.+.|+++ +.. . .+.+..+++|+|+|+++. .+++..+++++||.++|| + |+|++. ++
T Consensus 330 ~~~L~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~Ris~~~-~~ 408 (427)
T 2hox_A 330 TALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINTQNGVGFEASSRYVRLSLIK-TQ 408 (427)
T ss_dssp HHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSGGGCSHHHHHHHTTEECEEGGGGTSCTTEEEEECSS-CH
T ss_pred HHHHHhCcCccccccccccccccccccCCCCceEEEEECCCcHHHHHHHHHHHCCEEEcCCCccCCCCCEEEEEecC-CH
Confidence 9999876 321 0 033446778999999774 345677777899999986 2 999987 88
Q ss_pred CcHHHHHHHHHHHHHh
Q 013839 407 GNVNYLANAIHEVTRS 422 (435)
Q Consensus 407 e~i~~~~~~l~~~l~~ 422 (435)
+++++++++|++++++
T Consensus 409 e~l~~~l~~l~~~~~~ 424 (427)
T 2hox_A 409 DDFDQLMYYLKDMVKA 424 (427)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhh
Confidence 8999999999988753
No 81
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}
Probab=100.00 E-value=3.8e-34 Score=274.75 Aligned_cols=317 Identities=13% Similarity=0.112 Sum_probs=232.2
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCch
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~ 127 (435)
.++++|||+.|.+ .. +.++.+.+.+...+ .. ...|++..+ +++|+++++++ +.. +++++ +|+|++
T Consensus 13 ~g~~~id~~~~~~-~~---~~~~~v~~a~~~~~-~~-~~~y~~~~~-~~lr~~la~~~-~~~-----~~~i~--~t~g~~ 77 (350)
T 3fkd_A 13 LSSEIVNFSTTVW-TD---GDKDHLEKHLVENL-NC-IRHYPEPDA-GTLRQMLAKRN-SVD-----NNAIL--VTNGPT 77 (350)
T ss_dssp ---CCEECSCCSC-CC---SCCHHHHHHHHHTG-GG-GGSCCCTTC-HHHHHHHHHHT-TCC-----GGGEE--EESHHH
T ss_pred ccccEEEccCCCC-CC---CCCHHHHHHHHHhH-hH-HhcCCCCcH-HHHHHHHHHHh-CcC-----HHHEE--EcCCHH
Confidence 3478999999984 22 33444444444444 22 556888776 89999999998 322 56888 999999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCC
Q 013839 128 GACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNP 207 (435)
Q Consensus 128 ~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NP 207 (435)
+|+.++ +..+. ||+|+++.|+|..+...++..|++++.++..++ ..++++ ++++++++++||||
T Consensus 78 ~al~~~--~~~l~--gd~Vi~~~p~~~~~~~~~~~~g~~~~~v~~~~~-~~~~~~-----------~~~~~v~i~~p~np 141 (350)
T 3fkd_A 78 AAFYQI--AQAFR--GSRSLIAIPSFAEYEDACRMYEHEVCFYPSNED-IGEADF-----------SNMDFCWLCNPNNP 141 (350)
T ss_dssp HHHHHH--HHHTT--TCEEEEEESCCHHHHHHHHHTTCEEEEEETTSC-GGGSCC-----------TTCSEEEEESSCTT
T ss_pred HHHHHH--HHHHC--CCEEEEeCCCcHHHHHHHHHcCCeEEEEecCCc-cccCcc-----------CCCCEEEEeCCCCC
Confidence 999888 55444 999999999999999999999999999987212 123443 35678888999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEec
Q 013839 208 TGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCV 287 (435)
Q Consensus 208 tG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~ 287 (435)
||.+++.+++++|++.|+++ ++|+||+|.++.+++.. . . ...+..+++++++|+||.+|++|+|+||+++
T Consensus 142 tG~~~~~~~l~~l~~~~~~~--~li~Dea~~~~~~~~~~--~--~-~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~--- 211 (350)
T 3fkd_A 142 DGRLLQRTEILRLLNDHPDT--TFVLDQSYVSFTTEEVI--R--P-ADIKGRKNLVMVYSFSHAYGIPGLRIGYIVA--- 211 (350)
T ss_dssp TCCCCCHHHHHHHHHHCTTS--EEEEECTTTTSCSSCCC--C--G-GGGTTCSSEEEEEESHHHHSCGGGCCEEEEC---
T ss_pred cCCCCCHHHHHHHHHhCCCC--EEEEECchhhhccCcch--h--h-HHhhcCCCEEEEecCchhccCcchheEeEEe---
Confidence 99999999999999988876 99999999998876421 1 1 2234567899999999999999999999963
Q ss_pred ChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccc
Q 013839 288 DSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITN 367 (435)
Q Consensus 288 ~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 367 (435)
+++ +++.+..... ..+++.++|.++..+|.+.. .+.+..++.. ++++.+.+.|++++ ++.+.++
T Consensus 212 ~~~----~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~------~~~~~~~~~~-~~~~~l~~~L~~~~---~~~~~~~ 275 (350)
T 3fkd_A 212 NKD----FMKRVAAFST--PWAVNALAIEAAKFILIHPA------QFTLPIRKWQ-RNTVDFITALNRLD---GVEVHPS 275 (350)
T ss_dssp CHH----HHHHHHTTCC--TTCSCHHHHHHHHHHHHCTT------TTCCCHHHHH-HHHHHHHHHHHHST---TEEECCC
T ss_pred CHH----HHHHHHHhCC--CCCCCHHHHHHHHHHHhCHH------HHHHHHHHHH-HHHHHHHHHHhcCC---CcEECCC
Confidence 888 8888877543 35788999999999887653 1223333333 77888889998873 2555555
Q ss_pred CcceeEecCC---CHHH-HHHHhhhccEEEeCCC----------cEEeccCCCCcHHHHHHHHHHHHHhhh
Q 013839 368 QLGMFCFSGL---TPYQ-VDRLAKEFHIYMTQDG----------RISMAGVTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 368 ~~g~~~~~~~---~~~~-~~~ll~~~gI~i~pgg----------Ris~~~~~~e~i~~~~~~l~~~l~~~~ 424 (435)
. +.|+|+.+ +.+. .+.+++++||.+.||. ||+++ +.+++++++++|++++++..
T Consensus 276 ~-~~~~~~~~~~~~~~~l~~~L~~~~gi~v~~g~~f~~~~~~~iRis~~--~~~~~~~l~~al~~~~~~~~ 343 (350)
T 3fkd_A 276 G-TTFFLLRLKKGTAAELKKYMLEEYNMLIRDASNFRGLDESYVRITTQ--RPAQNQLFIKALETFLEKYE 343 (350)
T ss_dssp S-SSEEEEEESSSCHHHHHHHHHHTTCEECEECTTSTTCCTTEEEEECC--CHHHHHHHHHHHHHHHTC--
T ss_pred C-CcEEEEECCCCCHHHHHHHHHHHCCEEEEeCccCCCCCCCEEEEEcC--CHHHHHHHHHHHHHHHHHhc
Confidence 4 44666543 4444 4656544899999862 99985 56888999999998876543
No 82
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=100.00 E-value=3.5e-33 Score=272.84 Aligned_cols=330 Identities=10% Similarity=0.039 Sum_probs=239.1
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcC--CCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCC
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAG--SEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALS 125 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~g 125 (435)
++++.|||+.|+| .+.+.++...+.+...+.. ....+|++..|.+++++++++++....+ .+++. +++|
T Consensus 41 ~g~~~idl~~~~~---~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g----~~~v~--~~~g 111 (398)
T 3a2b_A 41 DGRRVLMFGSNSY---LGLTTDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAYVG----KEAAI--LFST 111 (398)
T ss_dssp TTEEEEECSCSCT---TCGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHT----CSEEE--EESS
T ss_pred CCceEEEeecccc---cCCCCCHHHHHHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHHHHHhC----CCcEE--EECC
Confidence 4567999999985 2323444444444443331 1133466777887888888777632211 13666 8999
Q ss_pred chhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCC-CcEEEEeCCC
Q 013839 126 GTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPD-SSFFLLHPSA 204 (435)
Q Consensus 126 g~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~-~~~~v~~~~p 204 (435)
|++|+.++ +..++.+||+|++++|+|..+...++..|++++.++. +|+++|++.+++..+ +++++++++|
T Consensus 112 gt~a~~~~--~~~~~~~gd~V~~~~p~~~~~~~~~~~~g~~~~~v~~-------~d~~~l~~~l~~~~~~~~~~v~~~~~ 182 (398)
T 3a2b_A 112 GFQSNLGP--LSCLMGRNDYILLDERDHASIIDGSRLSFSKVIKYGH-------NNMEDLRAKLSRLPEDSAKLICTDGI 182 (398)
T ss_dssp HHHHHHHH--HHHSSCTTCEEEEETTCCHHHHHHHHHSSSEEEEECT-------TCHHHHHHHHHTSCSSSCEEEEEESB
T ss_pred HHHHHHHH--HHHHhCCCCEEEECCccCHHHHHHHHHcCCceEEeCC-------CCHHHHHHHHHhhccCCceEEEEeCC
Confidence 99999988 6767889999999999999999999999999888864 478999999984322 6899999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCe-EEEEecccccccccCCcccEEE
Q 013839 205 HNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHL-IGCAQSYAKSMGLYGHRVGCLS 283 (435)
Q Consensus 205 ~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~s~SK~~g~~G~RvG~~~ 283 (435)
+||||..++ +++|.++|++||+++|+||+|..+.++.. ..++....+..++ +++++|+||.++++| ||++
T Consensus 183 ~nptG~~~~---~~~l~~~~~~~~~~li~De~~~~~~~~~~---~~~~~~~~~~~~~~di~~~s~sK~~~~~G---G~~~ 253 (398)
T 3a2b_A 183 FSMEGDIVN---LPELTSIANEFDAAVMVDDAHSLGVIGHK---GAGTASHFGLNDDVDLIMGTFSKSLASLG---GFVA 253 (398)
T ss_dssp CTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSGG---GCCHHHHHTCGGGCSEEEEESSSTTCSSC---EEEE
T ss_pred CCCCCCccC---HHHHHHHHHHcCcEEEEECCCcccccCCC---CCchHhhcCCCcCCeEEEecccccccCCC---cEEE
Confidence 999999987 67999999999999999999988766421 1112122222345 699999999999778 9996
Q ss_pred EEecChhHHHHHHHHHHHH-hhccccCCChhHHHH-HHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 013839 284 ILCVDSKQAAAIRSQIQQI-ARAMYGSPPVHGILL-VATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLN 361 (435)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~q~~-~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 361 (435)
+ +++ +++.+... ......+.+.+.|.+ +..+|+.. ++.++.+++++++++.+.+.|++++
T Consensus 254 ~---~~~----~~~~l~~~~~~~~~~~~~~~~~~a~~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~L~~~g---- 315 (398)
T 3a2b_A 254 G---DAD----VIDFLKHNARSVMFSASMTPASVASTLKALEII-------QNEPEHIEKLWKNTDYAKAQLLDHG---- 315 (398)
T ss_dssp E---CHH----HHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHH-------HHCTHHHHHHHHHHHHHHHHHHHTT----
T ss_pred e---CHH----HHHHHHHhcccceecCCCCHHHHHHHHHHHHHH-------hhCHHHHHHHHHHHHHHHHHHHhcC----
Confidence 4 788 77777664 223344555666664 44666431 3456788899999999999999886
Q ss_pred ccccccCcceeEecCCC----HH-HHHHHhhhccEEEeCC---------C--cEEecc-CCCCcHHHHHHHHHHHHHhhh
Q 013839 362 WEHITNQLGMFCFSGLT----PY-QVDRLAKEFHIYMTQD---------G--RISMAG-VTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 362 ~~~~~~~~g~~~~~~~~----~~-~~~~ll~~~gI~i~pg---------g--Ris~~~-~~~e~i~~~~~~l~~~l~~~~ 424 (435)
+.+..+. |+|+|+.+. .+ +...++ ++||.+.|+ + ||+++. .+++++++++++|+++++++.
T Consensus 316 ~~~~~~~-g~~~~~~~~~~~~~~~l~~~l~-~~gi~v~~~~~~~~~~~~~~iRis~~~~~~~e~i~~~~~~l~~~l~~~~ 393 (398)
T 3a2b_A 316 FDLGATE-SPILPIFIRSNEKTFWVTKMLQ-DDGVFVNPVVSPAVPAEESLIRFSLMATHTYDQIDEAIEKMVKVFKQAE 393 (398)
T ss_dssp CCBCSCC-SSEEEEECCCHHHHHHHHHHHH-HTTEECEEECTTTSCGGGCEEEEECCTTCCHHHHHHHHHHHHHHHHHCC
T ss_pred CCcCCCC-CCEEEEEcCCHHHHHHHHHHHH-HCCcEEEeeCCCCCCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHHhC
Confidence 3455555 578888663 23 345554 569999875 2 999874 488999999999999987654
No 83
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}
Probab=99.98 E-value=4e-31 Score=258.07 Aligned_cols=328 Identities=14% Similarity=0.103 Sum_probs=228.7
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhc---CC---CCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeE
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIA---GS---EFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGV 121 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~ 121 (435)
++++.|||+.|+|... ..++...+.+.+.+. .+ ....|+...+..++++.+++++ +. ++.+.
T Consensus 41 ~g~~~id~~~~~~~g~---~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~-~~------~~~i~-- 108 (399)
T 3tqx_A 41 GEKEVLNFCANNYLGL---ADHPALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKDISEFL-GT------DDTIL-- 108 (399)
T ss_dssp TTEEEEECSSCCTTSC---TTCHHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHHHHHH-TC------SEEEE--
T ss_pred CCeeEEEeeccCcccc---cCCHHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHHHHHHH-CC------CcEEE--
Confidence 4568999999976222 223333333333332 11 1122445566789999999998 33 22344
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCC---CcEE
Q 013839 122 QALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPD---SSFF 198 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~---~~~~ 198 (435)
+.+|++|+.++ +..++.+||+|+++.|+|..+...++..|++++.++. +|++++++.+++... ++++
T Consensus 109 -~~sGt~a~~~~--l~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~~~ 178 (399)
T 3tqx_A 109 -YSSCFDANGGL--FETLLGPEDAIISDELNHASIIDGIRLCKAQRYRYKN-------NAMGDLEAKLKEADEKGARFKL 178 (399)
T ss_dssp -ESCHHHHHHTT--HHHHCCTTCEEEEETTCCHHHHHHHHSCCSEEEEECT-------TCTTHHHHHHHHHHTTTCSSEE
T ss_pred -ECchHHHHHHH--HHHhcCCCCEEEECCcccHHHHHHHHHcCCceeEeCC-------CCHHHHHHHHHhhhccCCCceE
Confidence 56678888877 6777899999999999999999999999999888875 367788888774222 7899
Q ss_pred EEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhh-cCCeEEEEecccccccccCC
Q 013839 199 LLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLE-DEHLIGCAQSYAKSMGLYGH 277 (435)
Q Consensus 199 v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~s~SK~~g~~G~ 277 (435)
+++++|+||||.+++ +++|.++|++||+++|+||+|....++..... .....+ ..+.+++++|+||.++ |+
T Consensus 179 v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~---~~~~~~~~~~~di~~~s~sK~~~--g~ 250 (399)
T 3tqx_A 179 IATDGVFSMDGIIAD---LKSICDLADKYNALVMVDDSHAVGFIGENGRG---TPEYCGVADRVDILTGTLGKALG--GA 250 (399)
T ss_dssp EEEESEETTTTEECC---HHHHHHHHHHTTCEEEEECTTTTTTSSTTSCC---HHHHHTCTTCCSEEEEESSSSSC--SS
T ss_pred EEEeCCCCCCCCcCC---HHHHHHHHHHcCCEEEEECCccccccCCCCCc---hHHhhCCCCCCcEEEecchHhcc--cC
Confidence 999999999999998 67999999999999999999953222211111 112222 2356799999999998 44
Q ss_pred cccEEEEEecChhHHHHHHHHHHHHhhc--cccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013839 278 RVGCLSILCVDSKQAAAIRSQIQQIARA--MYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEK 355 (435)
Q Consensus 278 RvG~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 355 (435)
+.||+++ +++ +++.+...... ...+.+.+.+.++...+... .++.++.+++++++++++.+.|++
T Consensus 251 ~gG~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~~l~~~L~~ 317 (399)
T 3tqx_A 251 SGGYTSG---HKE----IIEWLRNRSRPYLFSNTVAPVIVATSLKVLELL------KTEGPQLRKQLQENSRYFRAGMEK 317 (399)
T ss_dssp CCEEEEE---CHH----HHHHHHHHCHHHHSSCCCCHHHHHHHHHHHHHH------HHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEc---CHH----HHHHHHHhCcceeccCCCcHHHHHHHHHHHHHH------hhccHHHHHHHHHHHHHHHHHHHH
Confidence 5599964 888 77777664332 22345556555665565422 145678889999999999999999
Q ss_pred hCCCCCccccccCcceeEecCC----CH-HHHHHHhhhccEEEeCC-------C----cEEec-cCCCCcHHHHHHHHHH
Q 013839 356 LGSSLNWEHITNQLGMFCFSGL----TP-YQVDRLAKEFHIYMTQD-------G----RISMA-GVTTGNVNYLANAIHE 418 (435)
Q Consensus 356 ~~~~~~~~~~~~~~g~~~~~~~----~~-~~~~~ll~~~gI~i~pg-------g----Ris~~-~~~~e~i~~~~~~l~~ 418 (435)
+|. .+.++.++ |+|+.+ +. ++...++ ++||.+.|+ + ||+++ ..+++++++++++|++
T Consensus 318 ~g~----~~~~~~~~-~~~~~~~~~~~~~~~~~~l~-~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~ 391 (399)
T 3tqx_A 318 LGF----QLVPGNHP-IIPVMLGDAQLATNMADHLL-QEGIYVVGFSYPVVPMGKARIRVQMSAVHTQQQLDRAIEAFGQ 391 (399)
T ss_dssp HTC----CBCCCSSS-EEEEEEECHHHHHHHHHHHH-HTTEECCEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred cCC----CcCCCCCC-EEEEEeCCHHHHHHHHHHHH-HCCCEEeeeCCCCCCCCCceEEEEeecCCCHHHHHHHHHHHHH
Confidence 873 45555554 566544 22 3445554 579999853 2 99986 3488999999999999
Q ss_pred HHHhhh
Q 013839 419 VTRSEQ 424 (435)
Q Consensus 419 ~l~~~~ 424 (435)
+++++.
T Consensus 392 ~~~~~~ 397 (399)
T 3tqx_A 392 VGKKLG 397 (399)
T ss_dssp HHHHTT
T ss_pred HHHHhc
Confidence 987653
No 84
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=99.97 E-value=1.1e-30 Score=256.75 Aligned_cols=327 Identities=11% Similarity=0.047 Sum_probs=233.8
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcC---C---CCCCCCC--CcccHHHHHHHHHhHcCCCCccccCCCeeeE
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAG---S---EFLESIS--ASVSTKMVEESVKLVYGKDSDVVKEGRSAGV 121 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~Y~~--~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~ 121 (435)
++.|+|+.|.+ + +.++.+.+.+...+.. . ....|++ ..+..++++++++++...+ ++++.
T Consensus 27 ~~~i~l~~~~~-~----~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~~-----~~~v~-- 94 (420)
T 1t3i_A 27 HPLVYLDNAAT-S----QKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARS-----PREIV-- 94 (420)
T ss_dssp EECEECBTTTC-C----CCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSC-----GGGEE--
T ss_pred CceEEecCCcc-C----CCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCCC-----CCeEE--
Confidence 45899999995 1 2333444433333321 0 1234654 4778999999999984312 45777
Q ss_pred ecCCchhHHHHHHHHHHH----hCCCCEEEEcCCCChh----hHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCC
Q 013839 122 QALSGTGACRLFAEFQRR----FHPESHIYFPDPTWSN----HHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAP 193 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~----~~~gd~Vlv~~p~y~~----~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~ 193 (435)
+++||++|+.++ +..+ +.+||+|++++|+|.. +...++..|++++.++. ++++.+|+++++++++
T Consensus 95 ~~~g~t~a~~~~--~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~--~~~~~~d~~~l~~~l~--- 167 (420)
T 1t3i_A 95 YTRNATEAINLV--AYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQL--DEQESFDLEHFKTLLS--- 167 (420)
T ss_dssp EESSHHHHHHHH--HHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECB--CTTSSBCHHHHHHHCC---
T ss_pred EcCChHHHHHHH--HHHhhhcccCCCCEEEECcchhHHHHHHHHHHHHhcCcEEEEecc--CCCCCcCHHHHHHhhC---
Confidence 899999999998 6666 7899999999999988 55667788999999987 3557799999999997
Q ss_pred CCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEeccccccc
Q 013839 194 DSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMG 273 (435)
Q Consensus 194 ~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g 273 (435)
+++++|++++|+||||..++ +++|.++|++||+++|+|++|...... . + +... +.++++.|+||.+|
T Consensus 168 ~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~~-~--~---~~~~----~~di~~~s~sK~~~ 234 (420)
T 1t3i_A 168 EKTKLVTVVHISNTLGCVNP---AEEIAQLAHQAGAKVLVDACQSAPHYP-L--D---VQLI----DCDWLVASGHKMCA 234 (420)
T ss_dssp TTEEEEEEESBCTTTCBBCC---HHHHHHHHHHTTCEEEEECTTTTTTSC-C--C---HHHH----TCSEEEEEGGGTTS
T ss_pred CCceEEEEeCCcccccCcCC---HHHHHHHHHHcCCEEEEEhhhccCCcc-C--c---hhhc----CCCEEEEehhhhcC
Confidence 57899999999999999998 679999999999999999998754432 1 1 1111 35788999999998
Q ss_pred ccCCcccEEEEEecChhHHHHHHHHHHHHhhc--------------------cccCCChhHHHHHHH-HhCChhhHHHHH
Q 013839 274 LYGHRVGCLSILCVDSKQAAAIRSQIQQIARA--------------------MYGSPPVHGILLVAT-ILSDPNLKSLWI 332 (435)
Q Consensus 274 ~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~--------------------~~~~~~~~~q~~~~~-~l~~~~l~~~~~ 332 (435)
.+| +||+++ +++ +++.+...... ...+.+.+.+.++.. ++.... .
T Consensus 235 ~~g--~G~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~-----~ 300 (420)
T 1t3i_A 235 PTG--IGFLYG---KEE----ILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLT-----D 300 (420)
T ss_dssp CTT--CEEEEE---CHH----HHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHH-----H
T ss_pred CCc--eEEEEE---chH----HHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHH-----H
Confidence 777 899974 777 76666543211 112455555555433 343211 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccC------cceeEec--CCCHHHHHHHhhhccEEEeCC--------
Q 013839 333 DEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQ------LGMFCFS--GLTPYQVDRLAKEFHIYMTQD-------- 396 (435)
Q Consensus 333 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~------~g~~~~~--~~~~~~~~~ll~~~gI~i~pg-------- 396 (435)
..+++.+++++++++.+.+.|++++ ++.+..+. ++++.|. +.+.+.+.+.++++||.+.++
T Consensus 301 ~~~~~~~~~~~~~~~~l~~~L~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~ 377 (420)
T 1t3i_A 301 LGMENIHNYEVELTHYLWQGLGQIP---QLRLYGPNPKHGDRAALASFNVAGLHASDVATMVDQDGIAIRSGHHCTQPLH 377 (420)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHTCT---TEEEESCCGGGSCBCSEEEEEETTBCHHHHHHHHHTTTEECBCSCTTCHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCC---CeEEeCCCccccccCCEEEEEECCCCHHHHHHHHHHCCeEEeeccccchHHH
Confidence 2356788889999999999998873 24554443 6666553 334555555667899999986
Q ss_pred -----C---cEEecc-CCCCcHHHHHHHHHHHHHhhhh
Q 013839 397 -----G---RISMAG-VTTGNVNYLANAIHEVTRSEQE 425 (435)
Q Consensus 397 -----g---Ris~~~-~~~e~i~~~~~~l~~~l~~~~~ 425 (435)
. |++++. .+++++++++++|+++++++.+
T Consensus 378 ~~~g~~~~iRis~~~~~~~~~i~~~~~~l~~~~~~~~~ 415 (420)
T 1t3i_A 378 RLFDASGSARASLYFYNTKEEIDLFLQSLQATIRFFSD 415 (420)
T ss_dssp HHTTCCCCEEEECCTTCCHHHHHHHHHHHHHHHHHTC-
T ss_pred HhcCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 2 999864 3788999999999999887653
No 85
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=99.97 E-value=1e-29 Score=248.54 Aligned_cols=314 Identities=12% Similarity=0.030 Sum_probs=228.8
Q ss_pred CeeeeecceecCCCCCcccchHHHHHHHHhcC-CCCCCCCCCcccH---HHHHHHHHhHcCCCCccccCCCeeeEecCCc
Q 013839 51 YKINLGVGAYRDDKGRPVVLQCVREAEAKIAG-SEFLESISASVST---KMVEESVKLVYGKDSDVVKEGRSAGVQALSG 126 (435)
Q Consensus 51 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Y~~~~g~~---~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg 126 (435)
+..++++|.| +....+...+.+.++...+.. ...+.|+. .|.+ ++++++++++ +. + +++ ++.||
T Consensus 19 ~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~-~~~~~~~~l~~~ia~~~-g~------~-~~i--~~~~g 86 (404)
T 1e5e_A 19 KDQFGAAIPP-IYQTSTFVFDNCQQGGNRFAGQESGYIYTR-LGNPTVSNLEGKIAFLE-KT------E-ACV--ATSSG 86 (404)
T ss_dssp CCTTCCSSCC-CCCCSBCCCSSHHHHHHHHTTSSCSCCBTT-TCCHHHHHHHHHHHHHH-TC------S-EEE--EESSH
T ss_pred CCCCCCcCCC-CcCCCccccCCHHHHHHhhcCCcCCccccC-CcChHHHHHHHHHHHHh-CC------C-cEE--EeCCh
Confidence 4457899997 776666666666665554432 22456877 6777 8999999998 32 1 344 68888
Q ss_pred hhHHHHHHHHHHHhCCCCEEEEcCCCChhhHH----HHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeC
Q 013839 127 TGACRLFAEFQRRFHPESHIYFPDPTWSNHHN----IWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHP 202 (435)
Q Consensus 127 ~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~ 202 (435)
++|+.++ +.+++.+||+|++++|+|..+.. .++..|++++.++.. |++++++++. +++++++++
T Consensus 87 ~~ai~~~--~~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~i~---~~t~~v~l~ 154 (404)
T 1e5e_A 87 MGAIAAT--VLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTA-------IPGEVKKHMK---PNTKIVYFE 154 (404)
T ss_dssp HHHHHHH--HHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-------STTHHHHHCC---TTEEEEEEE
T ss_pred HHHHHHH--HHHHhCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC-------CHHHHHHhcC---CCCcEEEEE
Confidence 9999888 67778999999999999999888 678899999888762 7889999987 678999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHh-cCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcc-c
Q 013839 203 SAHNPTGVDPTEEQWREISYQFKV-KGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRV-G 280 (435)
Q Consensus 203 ~p~NPtG~~~~~~~l~~i~~~~~~-~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~Rv-G 280 (435)
+|+||||.+++ +++|.++|++ ||+++|+|++|..+.+.. ++ . .+.++++.|+||.++.+|+|+ |
T Consensus 155 ~p~NptG~v~~---l~~i~~la~~~~~~~li~De~~~~~~~~~------~~----~-~~~di~~~S~sK~~~~~g~ri~G 220 (404)
T 1e5e_A 155 TPANPTLKIID---MERVCKDAHSQEGVLVIADNTFCSPMITN------PV----D-FGVDVVVHSATKYINGHTDVVAG 220 (404)
T ss_dssp SSCTTTCCCCC---HHHHHHHHHTSTTCEEEEECTTTCTTTCC------GG----G-GTCSEEEEETTTTTTCSSCCCCE
T ss_pred CCCCCCCcccC---HHHHHHHHHhhcCCEEEEECCCchhhhCC------cc----c-cCCEEEEEcCccccCCCCCCeEE
Confidence 99999999986 6799999999 999999999998877531 11 1 257899999999999999998 9
Q ss_pred EEEEEecChhHHHHHHH-HHHHHhhcc-ccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-
Q 013839 281 CLSILCVDSKQAAAIRS-QIQQIARAM-YGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLG- 357 (435)
Q Consensus 281 ~~~~~~~~~~~~~~~~~-~l~~~~~~~-~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~- 357 (435)
|+++ +++ +++ .+....... ..+.+.+.+.++...+... ....++..++.+.+.+.+++.+
T Consensus 221 ~~~~---~~~----~~~~~l~~~~~~~~g~~~~~~~~~~~~~~l~~~----------~~~~~~~~~~~~~l~~~l~~~~~ 283 (404)
T 1e5e_A 221 LICG---KAD----LLQQIRMVGIKDITGSVISPHDAWLITRGLSTL----------NIRMKAESENAMKVAEYLKSHPA 283 (404)
T ss_dssp EEEE---CHH----HHHHHHHTCCCCCCCCCCCHHHHHHHHHHHTTH----------HHHHHHHHHHHHHHHHHHHTCTT
T ss_pred EEEE---CHH----HHHHHHHHHHHhCCCCCCCHHHHHHHHHhHhHH----------HHHHHHHHHHHHHHHHHHHhCCC
Confidence 9974 777 666 676654443 4567888888888888653 1223333445555555555442
Q ss_pred -----CC-----CCccccccC----cceeEecCCC--HHHHHHHhhhccEEEeC--------------------------
Q 013839 358 -----SS-----LNWEHITNQ----LGMFCFSGLT--PYQVDRLAKEFHIYMTQ-------------------------- 395 (435)
Q Consensus 358 -----~~-----~~~~~~~~~----~g~~~~~~~~--~~~~~~ll~~~gI~i~p-------------------------- 395 (435)
.+ .++.+..++ ++++.| .+. .+.+.+++++.||.+..
T Consensus 284 v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~ 362 (404)
T 1e5e_A 284 VEKVYYPGFEDHEGHDIAKKQMRMYGSMITF-ILKSGFEGAKKLLDNLKLITLAVSLGGCESLIQHPASMTHAVVPKEER 362 (404)
T ss_dssp EEEEECTTCSSSTTHHHHHHHCSSCCSEEEE-EETTHHHHHHHHHHTCSSSEESSCCCSSSCEEECGGGTTTTTSCHHHH
T ss_pred eeEEECCCCCCCccHHHHHhhCCCCceEEEE-EeCCCHHHHHHHHHhCCCceeccCCCCcceeeecccccccccCCHHHH
Confidence 00 012333333 788887 553 24567788888875432
Q ss_pred ---C---C--cEEeccCCCCcHHHHHHHHHHHHHhh
Q 013839 396 ---D---G--RISMAGVTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 396 ---g---g--Ris~~~~~~e~i~~~~~~l~~~l~~~ 423 (435)
| + |||++. |++++++++|+++++..
T Consensus 363 ~~~g~~~~~iRis~g~---e~~~~li~~l~~al~~~ 395 (404)
T 1e5e_A 363 EAAGITDGMIRLSVGI---EDADELIADFKQGLDAL 395 (404)
T ss_dssp HHTTCCTTEEEEECCS---SCHHHHHHHHHHHHHHH
T ss_pred HhcCCCCCeEEEEeCC---CCHHHHHHHHHHHHHHH
Confidence 1 3 999854 89999999999988653
No 86
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*
Probab=99.97 E-value=1.4e-29 Score=246.02 Aligned_cols=321 Identities=14% Similarity=0.101 Sum_probs=224.9
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcC-C-----CCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeE
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAG-S-----EFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGV 121 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~ 121 (435)
+++..|||+.|.+ .+.+.++...+.+.+.+.. + ....|....+..++++++++++ +. ++.+
T Consensus 37 ~g~~~id~~~~~~---~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~-g~------~~~i--- 103 (384)
T 1bs0_A 37 DDRQYLNFSSNDY---LGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWL-GY------SRAL--- 103 (384)
T ss_dssp TTEEEEECSCCCT---TSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHH-TC------SEEE---
T ss_pred CCceEEEeeccCc---cCCCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHh-CC------CcEE---
Confidence 4567999999873 2222333333333333321 1 1122345678899999999998 33 2233
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEe
Q 013839 122 QALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLH 201 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~ 201 (435)
++.+|++++.++ +..++++||.|+++.|+|..+...++..|++++.+|. +|++++++.+++..++++++++
T Consensus 104 ~~~sGt~a~~~~--~~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~v~~ 174 (384)
T 1bs0_A 104 LFISGFAANQAV--IAAMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAH-------NDVTHLARLLASPCPGQQMVVT 174 (384)
T ss_dssp EESCHHHHHHHH--HHHHCCTTCEEEEETTCCHHHHHHHHTSSSEEEEECT-------TCHHHHHHHHHSCCSSCEEEEE
T ss_pred EeCCcHHHHHHH--HHHhCCCCcEEEEcccccHHHHHHHHHcCCCEEEeCC-------CCHHHHHHHHHhcCCCCeEEEE
Confidence 466668998887 6667889999999999999999999999999888763 4789999999854334789999
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccE
Q 013839 202 PSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGC 281 (435)
Q Consensus 202 ~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~ 281 (435)
++||||||.+++ +++|.++|++||+++|+||+|..+.++...... ...+ +. ..+++++|+||.++++| ||
T Consensus 175 ~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~--~~~~-~~-~~di~~~s~sK~~~~~G---G~ 244 (384)
T 1bs0_A 175 EGVFSMDGDSAP---LAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGS--CWLQ-KV-KPELLVVTFGKGFGVSG---AA 244 (384)
T ss_dssp ESBCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCH--HHHT-TC-CCSEEEEESSSTTSSCC---EE
T ss_pred eCCCCCCCCccC---HHHHHHHHHHcCcEEEEECCcccceecCCCCch--HHhc-CC-CCcEEEeeccchhhccC---cE
Confidence 999999999998 569999999999999999999766543100111 1122 22 23489999999999777 99
Q ss_pred EEEEecChhHHHHHHHHHHHHhh-c-cccCCChhHHHHHHHHhCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhCC
Q 013839 282 LSILCVDSKQAAAIRSQIQQIAR-A-MYGSPPVHGILLVATILSDPNLKSLWID-EVKIMADRIQRKRTTLRQNLEKLGS 358 (435)
Q Consensus 282 ~~~~~~~~~~~~~~~~~l~~~~~-~-~~~~~~~~~q~~~~~~l~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~ 358 (435)
+++ +++ +++.+..... . ...+++.+.+.++.++++.. .+ +.++.+++++++++.+.+.|++++
T Consensus 245 ~~~---~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~al~~~------~~~~~~~~~~~~~~~~~~l~~~L~~~g- 310 (384)
T 1bs0_A 245 VLC---SST----VADYLLQFARHLIYSTSMPPAQAQALRASLAVI------RSDEGDARREKLAALITRFRAGVQDLP- 310 (384)
T ss_dssp EEE---CHH----HHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHH------HSHHHHHHHHHHHHHHHHHHHHHTTSS-
T ss_pred EEe---CHH----HHHHHHHhchhhhcCCCCCHHHHHHHHHHHHHH------hccccHHHHHHHHHHHHHHHHHHHhcC-
Confidence 964 788 7666665432 2 12257778777777666432 11 456788889999999999998876
Q ss_pred CCCccccccCcceeEecCC----CHHHH-HHHhhhccEEEeCC---------C--cEEeccC-CCCcHHHHHHHHHHH
Q 013839 359 SLNWEHITNQLGMFCFSGL----TPYQV-DRLAKEFHIYMTQD---------G--RISMAGV-TTGNVNYLANAIHEV 419 (435)
Q Consensus 359 ~~~~~~~~~~~g~~~~~~~----~~~~~-~~ll~~~gI~i~pg---------g--Ris~~~~-~~e~i~~~~~~l~~~ 419 (435)
+.+.+ ..+.++|+.+ +.+.+ +.+ .++||.+.++ + ||+++.. +++++++++++|+++
T Consensus 311 ---~~~~~-~~~~~~~~~~~~~~~~~~l~~~l-~~~gi~v~~~~~~~~~~~~~~~Ri~~~~~~~~~~i~~~~~~l~~~ 383 (384)
T 1bs0_A 311 ---FTLAD-SCSAIQPLIVGDNSRALQLAEKL-RQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN 383 (384)
T ss_dssp ---CEECS-CCSSBCCEEEESHHHHHHHHHHH-HHTTEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred ---CcccC-CCCCEEEEEeCCHHHHHHHHHHH-HHCCcEEEeecCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHhh
Confidence 34443 4455666644 23334 555 4579999864 2 9998643 788999999998764
No 87
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=99.97 E-value=3.4e-30 Score=251.89 Aligned_cols=325 Identities=13% Similarity=0.103 Sum_probs=230.9
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcCC--CCC------CCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeE
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGS--EFL------ESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGV 121 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~------~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~ 121 (435)
++.+.|+.+.+ + +.++.+++.+.+.+... ... .|.+..+..++++++++++.... ++++.
T Consensus 22 ~~~i~l~~~~~-~----~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~-----~~~v~-- 89 (406)
T 1kmj_A 22 LPLAYLDSAAS-A----QKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARS-----AEELV-- 89 (406)
T ss_dssp EECEECCTTTC-C----CCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSC-----GGGEE--
T ss_pred CceEEecCCcc-C----CCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCCC-----CCeEE--
Confidence 46899999985 1 23334444443433311 011 13356778999999999984311 45787
Q ss_pred ecCCchhHHHHHHHHHHH----hCCCCEEEEcCCCChhh----HHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCC
Q 013839 122 QALSGTGACRLFAEFQRR----FHPESHIYFPDPTWSNH----HNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAP 193 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~----~~~gd~Vlv~~p~y~~~----~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~ 193 (435)
+++|+++|+.++ +..+ +.+||+|++++|+|.+. ...++..|++++.++. .+++.+|+++|++++.
T Consensus 90 ~~~g~t~a~~~~--~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~d~~~l~~~l~--- 162 (406)
T 1kmj_A 90 FVRGTTEGINLV--ANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPL--NPDGTLQLETLPTLFD--- 162 (406)
T ss_dssp EESSHHHHHHHH--HHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECB--CTTSCBCGGGHHHHCC---
T ss_pred EeCChhHHHHHH--HHHhhhhcCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEEec--CCCCCcCHHHHHHHhc---
Confidence 899999999998 6666 78999999999998654 3446678999999987 3457799999999997
Q ss_pred CCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEeccccccc
Q 013839 194 DSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMG 273 (435)
Q Consensus 194 ~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g 273 (435)
++++++++++|+||||.+++ +++|.++|++||+++|+|++|...... . + +... +.++++.|+||.+|
T Consensus 163 ~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~g~~~-~--~---~~~~----~~d~~~~s~~K~~g 229 (406)
T 1kmj_A 163 EKTRLLAITHVSNVLGTENP---LAEMITLAHQHGAKVLVDGAQAVMHHP-V--D---VQAL----DCDFYVFSGHKLYG 229 (406)
T ss_dssp TTEEEEEEESBCTTTCCBCC---HHHHHHHHHHTTCEEEEECTTTTTTSC-C--C---HHHH----TCSEEEEEGGGTTS
T ss_pred cCCeEEEEeCCCccccCcCC---HHHHHHHHHHcCCEEEEEchhhcCCCC-C--c---cccc----CCCEEEEEchhccC
Confidence 57899999999999999998 679999999999999999998754321 1 1 1111 46788999999998
Q ss_pred ccCCcccEEEEEecChhHHHHHHHHHHHHhh---------------------ccccCCChhHHHHHH-HHhCChhhHHHH
Q 013839 274 LYGHRVGCLSILCVDSKQAAAIRSQIQQIAR---------------------AMYGSPPVHGILLVA-TILSDPNLKSLW 331 (435)
Q Consensus 274 ~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~---------------------~~~~~~~~~~q~~~~-~~l~~~~l~~~~ 331 (435)
++| +||+++ +++ +++.+..... ....+.+.+.+.++. .++....
T Consensus 230 ~~G--~G~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~----- 295 (406)
T 1kmj_A 230 PTG--IGILYV---KEA----LLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVS----- 295 (406)
T ss_dssp CTT--CEEEEE---CHH----HHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHH-----
T ss_pred CCC--cEEEEE---eHH----HHhhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHH-----
Confidence 888 899974 777 7666654321 011234555555443 3443210
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccc--CcceeEec--CCCHHHHHHHhhhccEEEeCC-----------
Q 013839 332 IDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITN--QLGMFCFS--GLTPYQVDRLAKEFHIYMTQD----------- 396 (435)
Q Consensus 332 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~--~~g~~~~~--~~~~~~~~~ll~~~gI~i~pg----------- 396 (435)
...+++.+++++++++++.+.|++++ ++.+..+ .++++.|. +.+.+.+.+.+.++||.+.+|
T Consensus 296 ~~~~~~~~~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~ 372 (406)
T 1kmj_A 296 ALGLNNIAEYEQNLMHYALSQLESVP---DLTLYGPQNRLGVIAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYY 372 (406)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHTTST---TEEEESCTTCCSEEEEEETTCCHHHHHHHHHHTTEECEEECTTCHHHHHHT
T ss_pred HcCHHHHHHHHHHHHHHHHHHHhcCC---CeEEecCCCcCCEEEEEECCCCHHHHHHHHhhCCcEEEeccccchHHHHhc
Confidence 12456778889999999999998863 2556666 67777664 335555555667789999863
Q ss_pred ---C--cEEeccC-CCCcHHHHHHHHHHHHHhh
Q 013839 397 ---G--RISMAGV-TTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 397 ---g--Ris~~~~-~~e~i~~~~~~l~~~l~~~ 423 (435)
+ ||+++.. +++++++++++|+++++.+
T Consensus 373 g~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~l 405 (406)
T 1kmj_A 373 NVPAMCRASLAMYNTHEEVDRLVTGLQRIHRLL 405 (406)
T ss_dssp TCSCEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeecCCCHHHHHHHHHHHHHHHHhh
Confidence 2 9998653 7889999999999987653
No 88
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=99.97 E-value=1.6e-29 Score=245.52 Aligned_cols=287 Identities=11% Similarity=0.108 Sum_probs=213.7
Q ss_pred HHHHHHHHHhH---cCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChh--hHHHHhhCCCCeee
Q 013839 95 TKMVEESVKLV---YGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSN--HHNIWRDAQIPERT 169 (435)
Q Consensus 95 ~~lr~~ia~~l---~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~--~~~~~~~~g~~~~~ 169 (435)
.++++++++++ ++.. .++++. +++||++|+.++ +.+++.+||+|++++|+|.+ +...++..|++++.
T Consensus 52 ~~~~~~~~~~la~~~g~~----~~~~v~--~~~g~t~a~~~~--~~~l~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~ 123 (386)
T 2dr1_A 52 RKVHMDTVERLREFLEVE----KGEVLL--VPSSGTGIMEAS--IRNGVSKGGKVLVTIIGAFGKRYKEVVESNGRKAVV 123 (386)
T ss_dssp HHHHHHHHHHHHHHHTCS----SSEEEE--ESSCHHHHHHHH--HHHHSCTTCEEEEEESSHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHHhCCC----CCcEEE--EeCChHHHHHHH--HHHhhcCCCeEEEEcCCchhHHHHHHHHHhCCceEE
Confidence 45666666554 2332 134677 899999999998 66668899999999999988 88888899999999
Q ss_pred eeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccH
Q 013839 170 YHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDA 249 (435)
Q Consensus 170 v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~ 249 (435)
++. ..++.+|+++|++++.+. ++++++++++|+||||.+.+ +++|.++|++||+++|+|++|..+.+. .
T Consensus 124 v~~--~~~~~~d~~~l~~~l~~~-~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~~-~---- 192 (386)
T 2dr1_A 124 LEY--EPGKAVKPEDLDDALRKN-PDVEAVTITYNETSTGVLNP---LPELAKVAKEHDKLVFVDAVSAMGGAD-I---- 192 (386)
T ss_dssp EEC--CTTCCCCHHHHHHHHHHC-TTCCEEEEESEETTTTEECC---HHHHHHHHHHTTCEEEEECTTTBTTBC-C----
T ss_pred Eec--CCCCCCCHHHHHHHHhcC-CCCcEEEEEeecCCcchhCC---HHHHHHHHHHcCCeEEEEccccccCcc-c----
Confidence 987 335679999999999542 46789999999999999876 679999999999999999998765532 1
Q ss_pred HHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHH----------------HHHh--hccccCCC
Q 013839 250 QAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQI----------------QQIA--RAMYGSPP 311 (435)
Q Consensus 250 ~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l----------------~~~~--~~~~~~~~ 311 (435)
++ ...+.++++.|+||.++.++ ++||+++ +++ +++.+ .... .....+++
T Consensus 193 -~~----~~~~~di~~~s~sK~~~~~~-g~G~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (386)
T 2dr1_A 193 -KF----DKWGLDVVFSSSQKAFGVPP-GLAIGAF---SER----FLEIAEKMPERGWYFDIPLYVKYLKEKESTPSTPP 259 (386)
T ss_dssp -CT----TTTTCSEEEEETTSTTCCCS-SCEEEEE---CHH----HHHHHTTCTTCCSTTCHHHHHHHHHHHSSCSSCCC
T ss_pred -cc----cccCCcEEEEeccccccCCC-ceEEEEE---CHH----HHHHHhcCCCCceEEeHHHHHHhhccCCCCCCCCC
Confidence 11 12246899999999998652 4899974 777 55544 2221 23345678
Q ss_pred hhHHHHHHHHhCChhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccC---cceeEecC----CCHHHH
Q 013839 312 VHGILLVATILSDPNLKSLWID--EVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQ---LGMFCFSG----LTPYQV 382 (435)
Q Consensus 312 ~~~q~~~~~~l~~~~l~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~---~g~~~~~~----~~~~~~ 382 (435)
.+.|.++..+|+.. .+ .+++.+++++++++.+.+.|++++ +.+..+. .+.++|+. .+.+.+
T Consensus 260 ~~~~~a~~~~l~~~------~~~g~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (386)
T 2dr1_A 260 MPQVFGINVALRII------EKMGGKEKWLEMYEKRAKMVREGVREIG----LDILAEPGHESPTITAVLTPPGIKGDEV 329 (386)
T ss_dssp HHHHHHHHHHHHHH------HHTTCHHHHHHHHHHHHHHHHHHHHHTT----CCBSSCTTCBCSSEEEEECCTTCCHHHH
T ss_pred HHHHHHHHHHHHHH------HHhcCHHHHHHHHHHHHHHHHHHHHHcC----CeeCcCccccCCceEEEEcCCCCCHHHH
Confidence 88888887777532 13 267788899999999999999875 3444443 35566653 345444
Q ss_pred -HHHhhhccEEEeCC------C--cEEecc-CCCCcHHHHHHHHHHHHHhhh
Q 013839 383 -DRLAKEFHIYMTQD------G--RISMAG-VTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 383 -~~ll~~~gI~i~pg------g--Ris~~~-~~~e~i~~~~~~l~~~l~~~~ 424 (435)
+.++ ++||.+.++ + ||+++. .+++++++++++|+++++++.
T Consensus 330 ~~~l~-~~gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~ 380 (386)
T 2dr1_A 330 YEAMR-KRGFELAKGYGSVKEKTFRIGHMGYMKFEDIQEMLDNLREVINELK 380 (386)
T ss_dssp HHHHH-HTTEECEECCGGGTTTEEEEECCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HCCeEEecCccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 5554 569999986 2 999874 488999999999999987765
No 89
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=99.97 E-value=5.3e-30 Score=248.62 Aligned_cols=291 Identities=18% Similarity=0.168 Sum_probs=213.1
Q ss_pred CCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHh----CCCCEEEEcCCCChhhHHHH---
Q 013839 88 SISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRF----HPESHIYFPDPTWSNHHNIW--- 160 (435)
Q Consensus 88 Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~----~~gd~Vlv~~p~y~~~~~~~--- 160 (435)
|.+..+..++++.+++++ +.. +++++ +++||++|+.++ +..+. .+||+|++++|+|+.+...+
T Consensus 40 ~~~~~~~~~l~~~la~~~-g~~-----~~~v~--~~~g~t~a~~~~--~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~ 109 (384)
T 1eg5_A 40 IEANLHMEKAREKVAKVL-GVS-----PSEIF--FTSCATESINWI--LKTVAETFEKRKRTIITTPIEHKAVLETMKYL 109 (384)
T ss_dssp HHHHHHHHHHHHHHHHHH-TSC-----GGGEE--EESCHHHHHHHH--HHHHHHHTTTTCCEEEECTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc-CCC-----CCeEE--EECCHHHHHHHH--HHhhhhhccCCCCEEEECCCCchHHHHHHHHH
Confidence 344567789999999998 322 45777 899999999998 55555 79999999999998886655
Q ss_pred hhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcC--ceeeeeccCC
Q 013839 161 RDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKG--HFPFFDMAYQ 238 (435)
Q Consensus 161 ~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~--~~vi~Deay~ 238 (435)
+..|++++.++. ++++.+|+++|++++. ++++++++++|+||||.+++ +++|.++|++|+ +++|+|++|.
T Consensus 110 ~~~g~~~~~v~~--~~~~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~~~li~Dea~~ 181 (384)
T 1eg5_A 110 SMKGFKVKYVPV--DSRGVVKLEELEKLVD---EDTFLVSIMAANNEVGTIQP---VEDVTRIVKKKNKETLVHVDAVQT 181 (384)
T ss_dssp HHTTCEEEECCB--CTTSCBCHHHHHHHCC---TTEEEEEEESBCTTTCBBCC---HHHHHHHHHHHCTTCEEEEECTTT
T ss_pred HhcCCEEEEEcc--CCCCccCHHHHHHHhC---CCCeEEEEECCCCCcccccC---HHHHHHHHHhcCCceEEEEEhhhh
Confidence 678999999987 3457799999999997 57899999999999999998 468999999999 9999999986
Q ss_pred CccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHH--HHHHHHH---hhccccCCChh
Q 013839 239 GFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAI--RSQIQQI---ARAMYGSPPVH 313 (435)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~--~~~l~~~---~~~~~~~~~~~ 313 (435)
+..... + + ...+.++++.|+||.+|++| +||+++ +++ + ...+... ......+++.+
T Consensus 182 -~~~~~~-----~---~-~~~~~di~~~s~sK~~g~~G--~G~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 242 (384)
T 1eg5_A 182 -IGKIPF-----S---L-EKLEVDYASFSAHKFHGPKG--VGITYI---RKG----VPIRPLIHGGGQERGLRSGTQNVP 242 (384)
T ss_dssp -TTTSCC-----C---C-TTTCCSEEEEEGGGGTSCTT--CEEEEE---CTT----SCCCCSBCSSCTTTTTBCSCCCHH
T ss_pred -cCCccc-----C---c-hhcCCCEEEecHHHhcCCCc--eEEEEE---cCC----CccccccccCcccccccCCCCChH
Confidence 221110 1 1 11246789999999999888 799974 655 3 2111110 01234567888
Q ss_pred HHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccC----c--ceeEecCCCHHHHHHHhh
Q 013839 314 GILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQ----L--GMFCFSGLTPYQVDRLAK 387 (435)
Q Consensus 314 ~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~----~--g~~~~~~~~~~~~~~ll~ 387 (435)
.+.++..+|... .+++++.+++++++++.+.+.|++.+ +.+..+. . ..|.+.+.+.+.+.+.|.
T Consensus 243 ~~~a~~~al~~~------~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 312 (384)
T 1eg5_A 243 GIVGAARAMEIA------VEELSEAAKHMEKLRSKLVSGLMNLG----AHIITPLEISLPNTLSVSFPNIRGSTLQNLLS 312 (384)
T ss_dssp HHHHHHHHHHHH------HHTHHHHHHHHHHHHHHHHHHHHTTT----CEECSCTTSBCTTEEEEECTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH------HHhHHHHHHHHHHHHHHHHHHhCCCC----eEEeCCcccCCCCEEEEEeCCCCHHHHHHHHh
Confidence 888887777642 24577888999999999999998754 3443331 1 122233456555544556
Q ss_pred hccEEEeCC-------------------------C--cEEecc-CCCCcHHHHHHHHHHHHHhhhh
Q 013839 388 EFHIYMTQD-------------------------G--RISMAG-VTTGNVNYLANAIHEVTRSEQE 425 (435)
Q Consensus 388 ~~gI~i~pg-------------------------g--Ris~~~-~~~e~i~~~~~~l~~~l~~~~~ 425 (435)
++||.+.+| + ||+++. .+++++++++++|++++++++.
T Consensus 313 ~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 378 (384)
T 1eg5_A 313 GYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEILSFLDL 378 (384)
T ss_dssp HTTEECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHHHHHC--
T ss_pred hCCeEEeccccccCCCCcchHHHHHcCCChhhcCCeEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 799999873 2 999863 3889999999999999987653
No 90
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=99.97 E-value=2.2e-30 Score=250.32 Aligned_cols=323 Identities=12% Similarity=0.088 Sum_probs=222.9
Q ss_pred CCCeeeeecceecCCCCCcccchHHHHHHHHhcCC--------CCCCCCCCcccHHHHHH-HHHhHcCCCCccccCCCee
Q 013839 49 SPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGS--------EFLESISASVSTKMVEE-SVKLVYGKDSDVVKEGRSA 119 (435)
Q Consensus 49 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~Y~~~~g~~~lr~~-ia~~l~~~~~~~~~~~~v~ 119 (435)
+++.+.|..|.+ .. +.++.+.+.+...+... ....|.+..+..++++. +++++ +. + ++.
T Consensus 6 ~~~~i~ld~~~~-~~---~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~-~~------~-~v~ 73 (371)
T 2e7j_A 6 TKDFINIDPLQT-GG---KLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFL-GC------D-VAR 73 (371)
T ss_dssp --CCEECCHHHH-TC---CCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHT-TS------S-EEE
T ss_pred CCCcEEeccccc-CC---CCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHc-CC------C-EEE
Confidence 457889988764 11 33334434333333221 12335567889999999 99997 33 2 566
Q ss_pred eEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeee--ecCCCCCCcChHhHHHHhhcCC--CC
Q 013839 120 GVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYH--YYDPDSKSLDFAALMDDIKNAP--DS 195 (435)
Q Consensus 120 ~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~--~~~~~~~~~d~e~l~~~i~~~~--~~ 195 (435)
+++|+++|+.++ +..++.+||+|++++|+|..+...++..|++++.++ . ++++.+|+++|++.+++.. ++
T Consensus 74 --~~~g~t~a~~~~--~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~~~d~~~l~~~l~~~~~~~~ 147 (371)
T 2e7j_A 74 --VTNGAREAKFAV--MHSLAKKDAWVVMDENCHYSSYVAAERAGLNIALVPKTD--YPDYAITPENFAQTIEETKKRGE 147 (371)
T ss_dssp --EESSHHHHHHHH--HHHHCCTTCEEEEETTCCHHHHHHHHHTTCEEEEECCCC--TTTCCCCHHHHHHHHHHHTTTSC
T ss_pred --EeCChHHHHHHH--HHHHhCCCCEEEEccCcchHHHHHHHHcCCeEEEeeccc--CCCCCcCHHHHHHHHHhhcccCC
Confidence 899999999998 666688999999999999999999999999999998 5 3357899999999987421 36
Q ss_pred cEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEeccccccccc
Q 013839 196 SFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLY 275 (435)
Q Consensus 196 ~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~ 275 (435)
++++++++|+||||.+++. ++|.++|++||+++|+|++|..+... . + +..+ +.+++++|+||.++.
T Consensus 148 ~~~v~~~~~~nptG~~~~~---~~i~~~~~~~~~~li~D~a~~~~~~~-~--~---~~~~----~~di~~~s~sK~~~~- 213 (371)
T 2e7j_A 148 VVLALITYPDGNYGNLPDV---KKIAKVCSEYDVPLLVNGAYAIGRMP-V--S---LKEI----GADFIVGSGHKSMAA- 213 (371)
T ss_dssp EEEEEEESSCTTTCCCCCH---HHHHHHHHTTTCCEEEECTTTBTTBC-C--C---HHHH----TCSEEEEEHHHHSSC-
T ss_pred eEEEEEECCCCCCcccCCH---HHHHHHHHHcCCeEEEECccccCCCC-C--C---hhhc----CCCEEEecCCcCCCC-
Confidence 7899999999999999985 69999999999999999998876542 1 1 2111 235899999999884
Q ss_pred CCcccEEEEEecChhHHHHHHHH-HHHHhh--cc-----ccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHH--HHH
Q 013839 276 GHRVGCLSILCVDSKQAAAIRSQ-IQQIAR--AM-----YGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRI--QRK 345 (435)
Q Consensus 276 G~RvG~~~~~~~~~~~~~~~~~~-l~~~~~--~~-----~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~--~~~ 345 (435)
|.|+||+++ +++ +++. +..... .. ..+++...+.++..++... +. +.++++ +++
T Consensus 214 ~~~~G~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-------~~--~~~~~~~~~~~ 277 (371)
T 2e7j_A 214 SGPIGVMGM---KEE----WAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHV-------RE--RIKRWDEEVEK 277 (371)
T ss_dssp CSSCEEEEE---CTT----TTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHH-------HH--HGGGHHHHHHH
T ss_pred CCCcEEEEE---ech----hhhhhccccccCcccccccccCCcCHHHHHHHHHHHHHH-------HH--HHHHHHHHHHH
Confidence 459999974 666 6555 544332 11 2334444444444454321 11 556667 788
Q ss_pred HHHHHHHHHhhCCCCCccccccC--cceeEecCC-CHHHHHHHhhhccEEEeC--------C---C--c-EEecc--CCC
Q 013839 346 RTTLRQNLEKLGSSLNWEHITNQ--LGMFCFSGL-TPYQVDRLAKEFHIYMTQ--------D---G--R-ISMAG--VTT 406 (435)
Q Consensus 346 ~~~l~~~l~~~~~~~~~~~~~~~--~g~~~~~~~-~~~~~~~ll~~~gI~i~p--------g---g--R-is~~~--~~~ 406 (435)
++++.+.|++++ +.+..+. .+.++|+.+ +.+.+.+.+.++||.+.| | + | ++++. .++
T Consensus 278 ~~~l~~~L~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~g~~~~~iRii~~~~~~~~~ 353 (371)
T 2e7j_A 278 ARRFAAEMEKLG----IKQLGDNPHNHDLMFFHAEVLYEISKKAKGGRFFLYRELKSRKIHGIKPGLTRYFKLSTYGLSD 353 (371)
T ss_dssp HHHHHHHHHHTT----CEEESSSSCCSSEEEEECHHHHHHHHHSSSGGGHHHHHHHHTTEECSCTTCCSEEEEECTTCCH
T ss_pred HHHHHHHHHHcC----cEEecCCCccCceEEEECCCHHHHHHHHHHCCEEEEeccccccccCCCCCceEEEEeeccCCCH
Confidence 889999998875 4454442 345777766 444454445578999876 2 2 9 99974 488
Q ss_pred CcHHHHHHHHHHHHHhh
Q 013839 407 GNVNYLANAIHEVTRSE 423 (435)
Q Consensus 407 e~i~~~~~~l~~~l~~~ 423 (435)
+++++++++|+++++++
T Consensus 354 ~~i~~~~~~l~~~~~~~ 370 (371)
T 2e7j_A 354 EEVDYVLNAFKEIIEKY 370 (371)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999988653
No 91
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Probab=99.97 E-value=1.1e-29 Score=243.18 Aligned_cols=321 Identities=12% Similarity=0.044 Sum_probs=211.5
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhH
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGA 129 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a 129 (435)
+++|+|+.+.. +.|++.+.+++.....+ ...|.+..+.++|++++++++ +.. ++. ++.||++|
T Consensus 3 ~~~i~~~~~~~------~~p~~~~~~a~~~~~~~-~~~y~~~~~~~~l~~~la~~~-g~~-------~~~--~~~~gt~a 65 (347)
T 1jg8_A 3 HMMIDLRSDTV------TKPTEEMRKAMAQAEVG-DDVYGEDPTINELERLAAETF-GKE-------AAL--FVPSGTMG 65 (347)
T ss_dssp --CEECSCGGG------CCCCHHHHHHHHTCCCC-CGGGTCCHHHHHHHHHHHHHH-TCS-------EEE--EESCHHHH
T ss_pred ceEEEeccccC------CCCCHHHHHHHhcCCCC-CcccCCChHHHHHHHHHHHHh-CCc-------eEE--EecCcHHH
Confidence 46789999984 23445566665544322 345878889999999999998 331 344 68889999
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCCChhhH---HHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcC---CCCcEEEEeCC
Q 013839 130 CRLFAEFQRRFHPESHIYFPDPTWSNHH---NIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNA---PDSSFFLLHPS 203 (435)
Q Consensus 130 ~~~~~~~~~~~~~gd~Vlv~~p~y~~~~---~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~---~~~~~~v~~~~ 203 (435)
+.++ +.+++.+||+|++++|+|.... ..+...|++++.+ . .+++.+|++++++++++. .++++++++++
T Consensus 66 ~~~~--~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v-~--~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~ 140 (347)
T 1jg8_A 66 NQVS--IMAHTQRGDEVILEADSHIFWYEVGAMAVLSGVMPHPV-P--GKNGAMDPDDVRKAIRPRNIHFPRTSLIAIEN 140 (347)
T ss_dssp HHHH--HHHHCCTTCEEEEETTCHHHHSSTTHHHHHTCCEEEEE-C--EETTEECHHHHHHHSCCSCTTSCCEEEEEEES
T ss_pred HHHH--HHHhcCCCCEEEEcCcchhhhccccchhhccCeEEEEe-c--CCCCccCHHHHHHHhccccccccCceEEEEec
Confidence 8777 6667889999999999986532 2567789988887 4 234568999999998731 12689999999
Q ss_pred CCCCC-CCCCCHHHHHHHHHHHHhcCceeeeeccCCCc--cCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCccc
Q 013839 204 AHNPT-GVDPTEEQWREISYQFKVKGHFPFFDMAYQGF--ASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVG 280 (435)
Q Consensus 204 p~NPt-G~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG 280 (435)
||||| |.+++.+++++|+++|++||+++|+|++|... .+.+. +..++ ....+. ++.|+||.++.+ +|
T Consensus 141 ~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~--~~~~~---~~~~d~--~~~s~sK~l~~~---~G 210 (347)
T 1jg8_A 141 THNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGV--PVKEY---AGYADS--VMFCLSKGLCAP---VG 210 (347)
T ss_dssp SBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCC--CHHHH---HHTCSE--EEEESSSTTCCS---SC
T ss_pred cccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCC--ChHHh---cccccE--EEEecccccCCC---ce
Confidence 99999 99999999999999999999999999986321 11111 11122 122232 345899998743 67
Q ss_pred EEEEEecChhHHHHHHHHHHHHhhccccC--CChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 013839 281 CLSILCVDSKQAAAIRSQIQQIARAMYGS--PPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGS 358 (435)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 358 (435)
|++ ++ +++ +++.+.+.......+ .+.+.+.++...+.. ..+..++ ..++++.+.+.|++++.
T Consensus 211 ~~~-~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---------~~~~~~~-~~~~~~~l~~~L~~~~~ 274 (347)
T 1jg8_A 211 SVV-VG-DRD----FIERARKARKMLGGGMRQAGVLAAAGIIALTK---------MVDRLKE-DHENARFLALKLKEIGY 274 (347)
T ss_dssp EEE-EE-CHH----HHHHHHHHHHHHTCCCSSTHHHHHHHHHHHHH---------SSTTHHH-HHHHHHHHHHHHHHHTC
T ss_pred EEE-Ec-CHH----HHHHHHHHHHHcCCchhHHHHHHHHHHHHHHH---------HHHHHHH-HHHHHHHHHHHHHhcCc
Confidence 543 13 777 666665544322222 233333433334421 1111222 23456777888877753
Q ss_pred CCCccccccCcceeEecCC-----CHHHH-HHHhhhccEEEeCCC----cEEec-cCCCCcHHHHHHHHHHHHHh
Q 013839 359 SLNWEHITNQLGMFCFSGL-----TPYQV-DRLAKEFHIYMTQDG----RISMA-GVTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 359 ~~~~~~~~~~~g~~~~~~~-----~~~~~-~~ll~~~gI~i~pgg----Ris~~-~~~~e~i~~~~~~l~~~l~~ 422 (435)
. +. ..+..+.|+|+.+ +.+.+ +.+ .++||.+.++| |+++. ..+++++++++++|++++++
T Consensus 275 ~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~v~~~~~~~iRl~~~~~~~~e~i~~~~~~l~~~l~~ 345 (347)
T 1jg8_A 275 S--VN-PEDVKTNMVILRTDNLKVNAHGFIEAL-RNSGVLANAVSDTEIRLVTHKDVSRNDIEEALNIFEKLFRK 345 (347)
T ss_dssp B--CC-GGGCCSSEEEEECTTSSSCHHHHHHHH-HHHTEECEEEETTEEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred e--ec-cCCCcceEEEEEcccccCCHHHHHHHH-HHCCCEEecCCCCeEEEEeCCCCCHHHHHHHHHHHHHHHHh
Confidence 1 11 2233445677643 34444 555 56899999864 99873 44889999999999998764
No 92
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4
Probab=99.97 E-value=2.2e-29 Score=246.00 Aligned_cols=326 Identities=14% Similarity=0.115 Sum_probs=228.9
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcC-CCC---CCCC--CCcccHHHHHHHHHhHcCCCCccccCCCeeeE
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAG-SEF---LESI--SASVSTKMVEESVKLVYGKDSDVVKEGRSAGV 121 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~Y~--~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~ 121 (435)
++...|||+.|+| .++..++.+.+.+.+.+.. +.. ..|. ...+..++++++++++ +. ++.+
T Consensus 43 ~g~~~id~~~~~~---~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~-g~------~~~i--- 109 (401)
T 1fc4_A 43 DGSHVINFCANNY---LGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFL-GM------EDAI--- 109 (401)
T ss_dssp TSCEEEECCCSCT---TSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHH-TC------SEEE---
T ss_pred CCccEEEeeccCc---ccccCCHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHHHHHh-CC------CcEE---
Confidence 5678999999975 2211233333333333321 111 1232 2567889999999998 33 2234
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCC---CcEE
Q 013839 122 QALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPD---SSFF 198 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~---~~~~ 198 (435)
++.+|++|+..+ +..++.+||+|+++.|+|..+...++..|++++.++. +|++++++.+++..+ ++++
T Consensus 110 ~~~sGs~a~~~~--~~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~~~ 180 (401)
T 1fc4_A 110 LYSSCFDANGGL--FETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYAN-------NDMQELEARLKEAREAGARHVL 180 (401)
T ss_dssp EESCHHHHHHTT--HHHHCCTTCEEEEETTCCHHHHHHHHTSCSEEEEECT-------TCHHHHHHHHHHHHHTTCSSEE
T ss_pred EeCChHHHHHHH--HHHHcCCCCEEEEcchhHHHHHHHHHHcCCceEEECC-------CCHHHHHHHHHHhhccCCCceE
Confidence 466678888776 6667889999999999998888888889988887753 478899888863211 6789
Q ss_pred EEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCC-CccC-CCCcccHHHHHHhhhcCCeEEEEecccccc-ccc
Q 013839 199 LLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQ-GFAS-GDLDKDAQAIRIFLEDEHLIGCAQSYAKSM-GLY 275 (435)
Q Consensus 199 v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~-~~~~-~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~-g~~ 275 (435)
+++++|+||||.+++ +++|.++|++||+++|+||+|. ++.+ .+ ....+.... ..+.+++++|+||.+ +.+
T Consensus 181 v~~~~~~nptG~~~~---~~~i~~l~~~~~~~li~De~~~~g~~~~~g--~~~~~~~~~--~~~~di~~~s~sK~~~~~~ 253 (401)
T 1fc4_A 181 IATDGVFSMDGVIAN---LKGVCDLADKYDALVMVDDSHAVGFVGENG--RGSHEYCDV--MGRVDIITGTLGKALGGAS 253 (401)
T ss_dssp EEEESEETTTTEECC---HHHHHHHHHHTTEEEEEECTTTTTTSSTTS--CCHHHHTTC--TTCCSEEEEESSSTTCSSS
T ss_pred EEEeCCcCCCCCCCC---HHHHHHHHHHcCCEEEEECcccccccCCCC--CccHHHcCC--CcCCcEEEecchhhccCCC
Confidence 999999999999998 6799999999999999999995 7753 22 122222111 124579999999999 655
Q ss_pred CCcccEEEEEecChhHHHHHHHHHHHHhh-c-cccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013839 276 GHRVGCLSILCVDSKQAAAIRSQIQQIAR-A-MYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNL 353 (435)
Q Consensus 276 G~RvG~~~~~~~~~~~~~~~~~~l~~~~~-~-~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l 353 (435)
| ||+++ +++ +++.+..... . ...+++.+.+.++..+++.. +..++.+++++++++.+.+.|
T Consensus 254 g---G~~~~---~~~----~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~-------~~~~~~~~~~~~~~~~l~~~L 316 (401)
T 1fc4_A 254 G---GYTAA---RKE----VVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMV-------EAGSELRDRLWANARQFREQM 316 (401)
T ss_dssp C---EEEEE---CHH----HHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHH-------HTCHHHHHHHHHHHHHHHHHH
T ss_pred C---EEEEc---CHH----HHHHHHHhCcCceeCCCCCHHHHHHHHHHHHHH-------hcCHHHHHHHHHHHHHHHHHH
Confidence 4 99964 788 7777766442 1 24577888888887777532 123567788999999999999
Q ss_pred HhhCCCCCccccccCcceeEecCC----CHHHHHHHhhhccEEEeCC-------C----cEEecc-CCCCcHHHHHHHHH
Q 013839 354 EKLGSSLNWEHITNQLGMFCFSGL----TPYQVDRLAKEFHIYMTQD-------G----RISMAG-VTTGNVNYLANAIH 417 (435)
Q Consensus 354 ~~~~~~~~~~~~~~~~g~~~~~~~----~~~~~~~ll~~~gI~i~pg-------g----Ris~~~-~~~e~i~~~~~~l~ 417 (435)
++++. .+. +..+.|+|+.+ +.+.+...|.++||.+.++ + ||+++. .+++++++++++|+
T Consensus 317 ~~~g~----~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~ 391 (401)
T 1fc4_A 317 SAAGF----TLA-GADHAIIPVMLGDAVVAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFT 391 (401)
T ss_dssp HHTTC----CBC-CSSSSEEEEEEECHHHHHHHHHHHHHTTEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred HHcCC----ccc-CCCCCEEEEEcCChHHHHHHHHHHHHCCcEEeeecCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHH
Confidence 98863 444 34566777755 2333433345679999865 1 899863 38899999999999
Q ss_pred HHHHhhh
Q 013839 418 EVTRSEQ 424 (435)
Q Consensus 418 ~~l~~~~ 424 (435)
++++++.
T Consensus 392 ~~~~~~~ 398 (401)
T 1fc4_A 392 RIGKQLG 398 (401)
T ss_dssp HHHHHTT
T ss_pred HHHHHhC
Confidence 9987654
No 93
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*
Probab=99.97 E-value=5.2e-30 Score=252.54 Aligned_cols=340 Identities=11% Similarity=0.069 Sum_probs=225.6
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCC--CCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCC
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSE--FLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALS 125 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~g 125 (435)
++...+||+.|.+...-|+ .++.+.+.+.+.+.... ...|.+..+..+|++++++++.+ . . ++++. +++|
T Consensus 39 ~g~~~id~~~~~~~~~lg~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~-~-~---~~~v~--~~~g 110 (426)
T 1sff_A 39 EGREYLDFAGGIAVLNTGH-LHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPG-D-F---AKKTL--LVTT 110 (426)
T ss_dssp TCCEEEESSHHHHTCTTCB-TCHHHHHHHHHHTTTCSCCCTTTEECHHHHHHHHHHHHHSSC-S-S---CEEEE--EESS
T ss_pred CCCEEEEcccChhhcccCC-CCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCc-c-c---ccEEE--EeCc
Confidence 4567899998873112222 23344444444443211 12467778999999999999843 1 1 36787 9999
Q ss_pred chhHHHHHHHHH-HHhCCCCEEEEcCCCChhhH-HHHhhCCCC-------------eeeeeecC---CCCCCcChHhHHH
Q 013839 126 GTGACRLFAEFQ-RRFHPESHIYFPDPTWSNHH-NIWRDAQIP-------------ERTYHYYD---PDSKSLDFAALMD 187 (435)
Q Consensus 126 g~~a~~~~~~~~-~~~~~gd~Vlv~~p~y~~~~-~~~~~~g~~-------------~~~v~~~~---~~~~~~d~e~l~~ 187 (435)
|++|+.++..+. .+..+| +|++++|+|.++. ..+...|.+ ++.++... ..++.+|+++|++
T Consensus 111 ~~~a~~~~~~~a~~~~~~~-~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~ 189 (426)
T 1sff_A 111 GSEAVENAVKIARAATKRS-GTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHR 189 (426)
T ss_dssp HHHHHHHHHHHHHHHHTCC-EEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhCCC-eEEEECCCcCCCchHhhhhcCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHHH
Confidence 999999984321 456676 8999999997754 355555543 55565521 0123478999999
Q ss_pred HhhcC--CCCcEEEEe-CCCCCCCC-CCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEE
Q 013839 188 DIKNA--PDSSFFLLH-PSAHNPTG-VDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIG 263 (435)
Q Consensus 188 ~i~~~--~~~~~~v~~-~~p~NPtG-~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i 263 (435)
++++. ++++++|++ ++++| || ..++.+++++|.++|++||+++|+||+|.++.+.+. ...+ +..+...
T Consensus 190 ~l~~~~~~~~~~~v~~~p~~~n-tG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~---~~~~----~~~~~~~ 261 (426)
T 1sff_A 190 IFKNDAAPEDIAAIVIEPVQGE-GGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGT---LFAM----EQMGVAP 261 (426)
T ss_dssp HHHHTCCGGGEEEEEECSBCTT-TTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGG----GGTTSCC
T ss_pred HHHhccCCCceEEEEEecccCC-CCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccc---hhhh----hhcCCCC
Confidence 88731 135566666 56788 99 788999999999999999999999999998776431 1111 1111122
Q ss_pred EEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Q 013839 264 CAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQ 343 (435)
Q Consensus 264 ~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~ 343 (435)
.+.||||.++. |+|+||+++ +++ +++.+.......+.+.+.++|.++.++|+... + ....++++
T Consensus 262 di~s~sK~~~~-GlriG~~~~---~~~----~~~~l~~~~~~~~~~~~~~~~~a~~aal~~~~------~--~~~~~~~~ 325 (426)
T 1sff_A 262 DLTTFAKSIAG-GFPLAGVTG---RAE----VMDAVAPGGLGGTYAGNPIACVAALEVLKVFE------Q--ENLLQKAN 325 (426)
T ss_dssp SEEEECGGGGT-SSCCEEEEE---EHH----HHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHH------H--TTHHHHHH
T ss_pred CEEEEcccccC-CCceEEEEE---cHH----HHhhhccCCcCcCCCCCHHHHHHHHHHHHHHH------h--cCHHHHHH
Confidence 24499999996 999999974 677 76666543334456678888888887775321 1 13445566
Q ss_pred HHHHHHHHHHHhhC--CCCCccccccCcceeEecCCC------------HHHH-HHHhhhccEEEeCCC------cEEec
Q 013839 344 RKRTTLRQNLEKLG--SSLNWEHITNQLGMFCFSGLT------------PYQV-DRLAKEFHIYMTQDG------RISMA 402 (435)
Q Consensus 344 ~~~~~l~~~l~~~~--~~~~~~~~~~~~g~~~~~~~~------------~~~~-~~ll~~~gI~i~pgg------Ris~~ 402 (435)
++++.+.+.|+.++ .+ .+....+. |+|+|+.+. .+.+ ..+ .++||.+.|++ ||+++
T Consensus 326 ~~~~~l~~~l~~~~~~~~-~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~gi~v~~~~~~~~~iRi~~~ 402 (426)
T 1sff_A 326 DLGQKLKDGLLAIAEKHP-EIGDVRGL-GAMIAIELFEDGDHNKPDAKLTAEIVARA-RDKGLILLSCGPYYNVLRILVP 402 (426)
T ss_dssp HHHHHHHHHHHHHHHTCT-TEEEEEEE-TTEEEEEEBGGGCTTSBCHHHHHHHHHHH-HHTTEECEEESTTSCEEEECCC
T ss_pred HHHHHHHHHHHHHHHhCC-CeEEEEEE-EEEEEEEEecCccccCCChHHHHHHHHHH-HHCCcEEecCCCCCCEEEEECC
Confidence 66777777776543 22 12233344 667777551 2334 555 46799999873 99875
Q ss_pred -cCCCCcHHHHHHHHHHHHHhh
Q 013839 403 -GVTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 403 -~~~~e~i~~~~~~l~~~l~~~ 423 (435)
..+++++++++++|+++++++
T Consensus 403 ~~~~~~~i~~~~~~l~~~l~~~ 424 (426)
T 1sff_A 403 LTIEDAQIRQGLEIISQCFDEA 424 (426)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHH
Confidence 448899999999999998764
No 94
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Probab=99.97 E-value=2.7e-29 Score=247.60 Aligned_cols=327 Identities=12% Similarity=0.058 Sum_probs=228.3
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcC-C-CCCCCCC----CcccHHHHHHHHHhHcCCCCccccCCCeeeE
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAG-S-EFLESIS----ASVSTKMVEESVKLVYGKDSDVVKEGRSAGV 121 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~Y~~----~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~ 121 (435)
+++..|||+.|+| .+...++.+.+.+.+.+.. + ....|.. .....++++.+++++ +. + +.+
T Consensus 62 ~g~~~id~~~~~~---lg~~~~~~v~~a~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~la~~~-g~------~-~~i-- 128 (427)
T 2w8t_A 62 RGKDTILLGTYNY---MGMTFDPDVIAAGKEALEKFGSGTCGSRMLNGTFHDHMEVEQALRDFY-GT------T-GAI-- 128 (427)
T ss_dssp TTEEEEECSCCCT---TCGGGCHHHHHHHHHHHHHHCSCCCSCTTTTCCCHHHHHHHHHHHHHH-TC------S-EEE--
T ss_pred CCceEEEEECccc---ccCCCCHHHHHHHHHHHHHhCCCCcccccccCCcHHHHHHHHHHHHHh-CC------C-ceE--
Confidence 4567899999985 2223334444444443321 1 1222333 344589999999998 43 2 333
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCC-CcEEEE
Q 013839 122 QALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPD-SSFFLL 200 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~-~~~~v~ 200 (435)
++.+|++|+..+ +.+++.+||.|+++.|+|..+...++..|++++.++. +|+++|++.+.+..+ ++++|+
T Consensus 129 ~~~sGs~a~~~a--l~~l~~~gd~vl~~~~~h~~~~~~~~~~g~~~~~~~~-------~d~~~le~~l~~~~~~~~~~v~ 199 (427)
T 2w8t_A 129 VFSTGYMANLGI--ISTLAGKGEYVILDADSHASIYDGCQQGNAEIVRFRH-------NSVEDLDKRLGRLPKEPAKLVV 199 (427)
T ss_dssp EESCHHHHHHHH--HHHHSCTTCEEEEETTCCHHHHHHHHHSCSEEEEECT-------TCHHHHHHHHHTSCSSSCEEEE
T ss_pred EecCcHHHHHHH--HHHhcCCCCEEEECCcccHHHHHHHHHcCCeeEEeCC-------CCHHHHHHHHHhccCCCCeEEE
Confidence 577888888776 6667889999999999999999999999998887753 489999999985322 689999
Q ss_pred eCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhh-cCCeEEEEecccccccccCCcc
Q 013839 201 HPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLE-DEHLIGCAQSYAKSMGLYGHRV 279 (435)
Q Consensus 201 ~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~s~SK~~g~~G~Rv 279 (435)
+++++||||.+.+ +++|.++|++||+++|+||+|..+.++..... +....+ ..+.++++.|+||.+|++|
T Consensus 200 ~~~~~n~tG~~~~---l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~---~~~~~~~~~~~di~~~s~sK~~g~~g--- 270 (427)
T 2w8t_A 200 LEGVYSMLGDIAP---LKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRG---VYEAQGLEGQIDFVVGTFSKSVGTVG--- 270 (427)
T ss_dssp EESEETTTTEECC---HHHHHHHHHHTTCEEEEECTTTTTTSSTTSCC---HHHHTTCTTCCSEEEEESSSTTCSCC---
T ss_pred EcCCCCCCCCccC---HHHHHHHHHHcCCEEEEECCccccccCCCCCc---hHhhcCCCcCCcEEEecchhhhccCC---
Confidence 9999999999987 67999999999999999999998776521111 222112 2345899999999999777
Q ss_pred cEEEEEecChhHHHHHHHHHHHHhh-c-cccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 013839 280 GCLSILCVDSKQAAAIRSQIQQIAR-A-MYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLG 357 (435)
Q Consensus 280 G~~~~~~~~~~~~~~~~~~l~~~~~-~-~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 357 (435)
||+++ +++ +++.+..... . ...+.+...+.++..+|+.. +..++.+++++++++++.+.|++++
T Consensus 271 G~v~~---~~~----l~~~l~~~~~~~~~~~~~~~~~~aa~~~al~~~-------~~~~~~~~~~~~~~~~l~~~L~~~g 336 (427)
T 2w8t_A 271 GFVVS---NHP----KFEAVRLACRPYIFTASLPPSVVATATTSIRKL-------MTAHEKRERLWSNARALHGGLKAMG 336 (427)
T ss_dssp EEEEE---CCT----TGGGGGGTCHHHHSSCCCCHHHHHHHHHHHHHH-------TSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CEEEe---CHH----HHHHHHHhcccccccCCCCHHHHHHHHHHHHHH-------hcCHHHHHHHHHHHHHHHHHHHHcC
Confidence 99964 777 6666655322 1 22345555555555666432 2246678889999999999999886
Q ss_pred CCCCcccc-ccCcceeEecCCC----HH-HHHHHhhhccEEEeCC---------C--cEEecc-CCCCcHHHHHHHHHHH
Q 013839 358 SSLNWEHI-TNQLGMFCFSGLT----PY-QVDRLAKEFHIYMTQD---------G--RISMAG-VTTGNVNYLANAIHEV 419 (435)
Q Consensus 358 ~~~~~~~~-~~~~g~~~~~~~~----~~-~~~~ll~~~gI~i~pg---------g--Ris~~~-~~~e~i~~~~~~l~~~ 419 (435)
+.+. ++..|.++|+.+. .. +...|+ ++||.+.++ + ||+++. .+++++++++++|+++
T Consensus 337 ----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~~Gi~v~~~~~~~~~~~~~~lRi~~~~~~t~e~i~~~~~~l~~~ 411 (427)
T 2w8t_A 337 ----FRLGTETCDSAIVAVMLEDQEQAAMMWQALL-DGGLYVNMARPPATPAGTFLLRCSICAEHTPAQIQTVLGMFQAA 411 (427)
T ss_dssp ----CEESCSSCCSSEEEEEESSHHHHHHHHHHHH-HTTEECEEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHH
T ss_pred ----CcccCCCCCCCEEEEEECCHHHHHHHHHHHH-HCCeEEeeeCCCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 3444 3314456666542 23 345554 569999875 1 888864 3789999999999999
Q ss_pred HHhhh
Q 013839 420 TRSEQ 424 (435)
Q Consensus 420 l~~~~ 424 (435)
+++..
T Consensus 412 l~~~~ 416 (427)
T 2w8t_A 412 GRAVG 416 (427)
T ss_dssp HHHHT
T ss_pred HHHhC
Confidence 87655
No 95
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=99.97 E-value=2.3e-29 Score=245.14 Aligned_cols=292 Identities=15% Similarity=0.124 Sum_probs=210.3
Q ss_pred CCCCCcccHHHHHHHHHhHcCCCCccccCC-CeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChh--hHHHHhhC
Q 013839 87 ESISASVSTKMVEESVKLVYGKDSDVVKEG-RSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSN--HHNIWRDA 163 (435)
Q Consensus 87 ~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~-~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~--~~~~~~~~ 163 (435)
.|++. ..++++++++++....+. +++ ++. +++||++|+.++ +..++.+||+|++++|+|.. +...++..
T Consensus 60 ~~~~~--~~~~~~~~~~~la~~~g~--~~~~~v~--~t~g~t~al~~~--~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~ 131 (393)
T 1vjo_A 60 HLDPA--FLALMDEIQSLLRYVWQT--ENPLTIA--VSGTGTAAMEAT--IANAVEPGDVVLIGVAGYFGNRLVDMAGRY 131 (393)
T ss_dssp TTSHH--HHHHHHHHHHHHHHHHTC--CCSCEEE--ESSCHHHHHHHH--HHHHCCTTCEEEEEESSHHHHHHHHHHHHT
T ss_pred ccCHH--HHHHHHHHHHHHHHHhCC--CCCcEEE--EeCchHHHHHHH--HHhccCCCCEEEEEcCChhHHHHHHHHHHc
Confidence 46542 445666666555211111 145 677 899999999998 66678899999999999998 88888999
Q ss_pred CCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCC
Q 013839 164 QIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASG 243 (435)
Q Consensus 164 g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~ 243 (435)
|++++.++. .+++.+|+++|++.+++. +++++++++|+||||.+.+ +++|.++|++||+++|+||+|. +...
T Consensus 132 g~~~~~v~~--~~~~~~d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~-~g~~ 203 (393)
T 1vjo_A 132 GADVRTISK--PWGEVFSLEELRTALETH--RPAILALVHAETSTGARQP---LEGVGELCREFGTLLLVDTVTS-LGGV 203 (393)
T ss_dssp TCEEEEEEC--CTTCCCCHHHHHHHHHHH--CCSEEEEESEETTTTEECC---CTTHHHHHHHHTCEEEEECTTT-TTTS
T ss_pred CCceEEEec--CCCCCCCHHHHHHHHhhC--CceEEEEeccCCCcceecc---HHHHHHHHHHcCCEEEEECCcc-ccCc
Confidence 999999987 335679999999999831 5778999999999999987 5689999999999999999987 3221
Q ss_pred CCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHH----h---------------h
Q 013839 244 DLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQI----A---------------R 304 (435)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~----~---------------~ 304 (435)
+. . + ...+.++++.|+||.++.+| |+||+++ +++ +++.++.. . .
T Consensus 204 ~~-----~---~-~~~~~di~~~s~sK~l~~~~-~~G~l~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (393)
T 1vjo_A 204 PI-----F---L-DAWGVDLAYSCSQKGLGCSP-GASPFTM---SSR----AIEKLQRRRTKVANWYLDMNLLGKYWGSE 266 (393)
T ss_dssp CC-----C---T-TTTTCSEEECCSSSTTCSCS-SCEEEEE---CHH----HHHHHHTCSSCCSCSTTCHHHHHHHHSTT
T ss_pred CC-----c---c-cccCccEEEEcCcccccCCC-ceEEEEE---CHH----HHHHHhccCCCCCceecCcHhhhhhhccC
Confidence 11 1 1 22356788999999998777 9999975 777 66666432 0 0
Q ss_pred cccc-CCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCc---ceeEec----C
Q 013839 305 AMYG-SPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQL---GMFCFS----G 376 (435)
Q Consensus 305 ~~~~-~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~---g~~~~~----~ 376 (435)
.... +++.+.|.++..+++... ..++++.+++++++++++.+.|++++ +.+..+++ +.+.++ +
T Consensus 267 ~~~~g~~~~~~~~a~~~al~~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~ 337 (393)
T 1vjo_A 267 RVYHHTAPINLYYALREALRLIA-----QEGLANCWQRHQKNVEYLWERLEDIG----LSLHVEKEYRLPTLTTVCIPDG 337 (393)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHH-----HHCHHHHHHHHHHHHHHHHHHHHHTT----CCBSSCGGGBCSSEEEEECCTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHH-----HccHHHHHHHHHHHHHHHHHHHHHcC----CcccCCccccCCcEEEEEcCCC
Confidence 1122 678888888888875421 13467888999999999999998875 34544443 233443 3
Q ss_pred CCHHHH-HHHhhhccEEEeCCC--------cEEe-c-cCCCCcHHHHHHHHHHHH
Q 013839 377 LTPYQV-DRLAKEFHIYMTQDG--------RISM-A-GVTTGNVNYLANAIHEVT 420 (435)
Q Consensus 377 ~~~~~~-~~ll~~~gI~i~pgg--------Ris~-~-~~~~e~i~~~~~~l~~~l 420 (435)
.+.+.+ +.+++++||.+.||. ||++ + ..+++++++++++|++++
T Consensus 338 ~~~~~~~~~l~~~~gi~v~~g~~~~~~~~iRis~~~~~~~~~~i~~~~~~l~~~l 392 (393)
T 1vjo_A 338 VDGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPALEQVL 392 (393)
T ss_dssp CCHHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhCCEEEecCccccCCCEEEEeCCccCChHHHHHHHHHHHHHHh
Confidence 355444 555544499999862 9994 3 224557999999998875
No 96
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Probab=99.96 E-value=4.7e-28 Score=236.65 Aligned_cols=328 Identities=15% Similarity=0.083 Sum_probs=220.4
Q ss_pred CCCeeeeecceecCCCCCcccchHHHHHHHHhcC---C---CCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEe
Q 013839 49 SPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAG---S---EFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQ 122 (435)
Q Consensus 49 ~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~ 122 (435)
+++.+++..+.+ .+.+.++.+.+.+.+.+.. + ....|+...+..++|+++++++ +. +++++ +
T Consensus 45 g~~~i~~~~~~~---~~~~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~-~~------~~~i~--~ 112 (401)
T 2bwn_A 45 KQDITVWCGNDY---LGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLH-QK------EAALV--F 112 (401)
T ss_dssp EEEEEECSCSCT---TSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHT-TC------SEEEE--E
T ss_pred CCcEEEeeCCCc---ccCCCCHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHh-CC------CcEEE--E
Confidence 355688877663 1222333443333333321 1 1223666778999999999998 32 34565 5
Q ss_pred cCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCC-CCcEEEEe
Q 013839 123 ALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAP-DSSFFLLH 201 (435)
Q Consensus 123 t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~-~~~~~v~~ 201 (435)
++ |+.++..+..++..+.+||+|+++.|+|..+...++..|++++.++.. |++++++.+.+.. ++++++++
T Consensus 113 ~s-G~~a~~~~~~~l~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~le~~l~~~~~~~~~~v~~ 184 (401)
T 2bwn_A 113 SS-AYNANDATLSTLRVLFPGLIIYSDSLNHASMIEGIKRNAGPKRIFRHN-------DVAHLRELIAADDPAAPKLIAF 184 (401)
T ss_dssp SC-HHHHHHHHHHHHHHHSTTCEEEEETTCCHHHHHHHHHSCCCEEEECTT-------CHHHHHHHHHHSCTTSCEEEEE
T ss_pred CC-cHHHHHHHHHHHhcCCCCCEEEECchhhHHHHHHHHHcCCeEEEEcCC-------CHHHHHHHHHhhccCCceEEEE
Confidence 44 444655552222224699999999999999999899999999988751 6888888887543 36899999
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhc-CCeEEEEecccccccccCCccc
Q 013839 202 PSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLED-EHLIGCAQSYAKSMGLYGHRVG 280 (435)
Q Consensus 202 ~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~s~SK~~g~~G~RvG 280 (435)
++|+||||.+++ +++|.++|++||+++|+||+|....++....... ...+. .+.+++++|+||.++++| |
T Consensus 185 ~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~---~~~~~~~~~~i~~~s~sK~~~~~G---G 255 (401)
T 2bwn_A 185 ESVYSMDGDFGP---IKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVA---ERDGLMHRIDIFNGTLAKAYGVFG---G 255 (401)
T ss_dssp ESBCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHH---HHHTCGGGCSEEEEESSSTTCSCC---E
T ss_pred ecCcCCCCCcCC---HHHHHHHHHHcCCEEEEeccccccccCCCCceee---eccCccccCcEEEeechhhccCCC---C
Confidence 999999999988 6699999999999999999998544432111111 11121 234789999999999888 9
Q ss_pred EEEEEecChhHHHHHHHHHHHHhhc--cccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 013839 281 CLSILCVDSKQAAAIRSQIQQIARA--MYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGS 358 (435)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 358 (435)
|+++ +++ +++.+...... ...+.+.+.+.++..++.... ....++.+++++++++++.+.|++++
T Consensus 256 ~~~~---~~~----~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~g- 322 (401)
T 2bwn_A 256 YIAA---SAR----MVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLK-----TAEGQKLRDAQQMHAKVLKMRLKALG- 322 (401)
T ss_dssp EEEE---CHH----HHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHT-----SHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred EEec---CHH----HHHHHHHhCcCceecCCCCHHHHHHHHHHHHHHH-----hcccHHHHHHHHHHHHHHHHHHHHCC-
Confidence 9964 777 66666643321 122344567766666664211 02246778889999999999998876
Q ss_pred CCCccccccCcceeEecCCC----HHHH-HHHhhhccEEEeCC-------C----cEEecc-CCCCcHHHHHHHHHHHHH
Q 013839 359 SLNWEHITNQLGMFCFSGLT----PYQV-DRLAKEFHIYMTQD-------G----RISMAG-VTTGNVNYLANAIHEVTR 421 (435)
Q Consensus 359 ~~~~~~~~~~~g~~~~~~~~----~~~~-~~ll~~~gI~i~pg-------g----Ris~~~-~~~e~i~~~~~~l~~~l~ 421 (435)
+.+..+.++ ++|+.+. .+.+ +.+++++||.+.|+ | |++++. .+++++++++++|+++++
T Consensus 323 ---~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~~~~gi~v~~~~~~~~~~~~~~iRis~~~~~t~~~i~~~~~~l~~~~~ 398 (401)
T 2bwn_A 323 ---MPIIDHGSH-IVPVVIGDPVHTKAVSDMLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLLWA 398 (401)
T ss_dssp ---CCBCCCSSS-CEEEECCCHHHHHHHHHHHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHHC-
T ss_pred ---CcccCCCCC-eEEEEeCChHHHHHHHHHHHhcCCEEEeecCCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHH
Confidence 345556665 5666552 2334 55555789999753 2 888863 378999999999998875
Q ss_pred h
Q 013839 422 S 422 (435)
Q Consensus 422 ~ 422 (435)
+
T Consensus 399 ~ 399 (401)
T 2bwn_A 399 R 399 (401)
T ss_dssp -
T ss_pred h
Confidence 4
No 97
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Probab=99.96 E-value=3.8e-29 Score=242.13 Aligned_cols=324 Identities=11% Similarity=0.066 Sum_probs=219.5
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHH-HHhcC--CCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecC
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAE-AKIAG--SEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQAL 124 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~ 124 (435)
++...+||+.|.|... ...+++.+.+++ +.+.. .....| +..+..++++++++++ +. ++++. +++
T Consensus 26 ~g~~~ld~~~~~~~~~--~g~~~~~v~~a~~~~~~~~~~~~~~y-~~~~~~~l~~~la~~~-g~------~~~v~--~~~ 93 (375)
T 2eh6_A 26 EGKEYLDFVSGIGVNS--LGHAYPKLTEALKEQVEKLLHVSNLY-ENPWQEELAHKLVKHF-WT------EGKVF--FAN 93 (375)
T ss_dssp TCCEEEESSHHHHTCT--TCBSCHHHHHHHHHHHHHCSCCCTTB-CCHHHHHHHHHHHHTS-SS------CEEEE--EES
T ss_pred CCCEEEEcCCcccccc--cCCCCHHHHHHHHHHHHhccccCccc-CCHHHHHHHHHHHhhc-CC------CCeEE--EeC
Confidence 4568899999986221 121333333333 33321 112357 4467889999999996 33 24677 899
Q ss_pred CchhHHHHHHHHH-HHh---CCC-CEEEEcCCCChhhHHHHhhCCCCee----eeeecCCCCC----CcChHhHHHHhhc
Q 013839 125 SGTGACRLFAEFQ-RRF---HPE-SHIYFPDPTWSNHHNIWRDAQIPER----TYHYYDPDSK----SLDFAALMDDIKN 191 (435)
Q Consensus 125 gg~~a~~~~~~~~-~~~---~~g-d~Vlv~~p~y~~~~~~~~~~g~~~~----~v~~~~~~~~----~~d~e~l~~~i~~ 191 (435)
||++|+.++.... .+. .+| |+|++++|+|..+...+...+...+ ..+.. .+. .+|+++|+++++
T Consensus 94 g~t~a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~l~~~l~- 170 (375)
T 2eh6_A 94 SGTESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLV--PGFSYAKLNDIDSVYKLLD- 170 (375)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCC--SSEEEECTTCHHHHHTTCC-
T ss_pred chHHHHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCC--CCceeCCCchHHHHHHHhc-
Confidence 9999999885332 235 788 9999999999887665544333221 01110 111 158999998887
Q ss_pred CCCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccc
Q 013839 192 APDSSFFLLHPSAHNPTGVD-PTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAK 270 (435)
Q Consensus 192 ~~~~~~~v~~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK 270 (435)
++++++++++++||||.+ .+.+++++|.++|++||+++|+||+|.++...+. ..++..+ +...+++ |+||
T Consensus 171 --~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~---~~~~~~~-~~~~d~~---s~SK 241 (375)
T 2eh6_A 171 --EETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGE---FYAYQHF-NLKPDVI---ALAK 241 (375)
T ss_dssp --TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGGGGG-TCCCSEE---EECG
T ss_pred --CCeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCc---chhhhhc-CCCCCEE---EEcc
Confidence 578999999999999999 5688899999999999999999999987765421 1112111 1112333 7889
Q ss_pred cccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 013839 271 SMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLR 350 (435)
Q Consensus 271 ~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 350 (435)
.++ +|+|+||+++ +++ +++.+.........+.+.+.+.++.++|+.. .+.+++++++++.+.
T Consensus 242 ~~~-~g~~~G~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----------~~~~~~~~~~~~~l~ 303 (375)
T 2eh6_A 242 GLG-GGVPIGAILA---REE----VAQSFTPGSHGSTFGGNPLACRAGTVVVDEV----------EKLLPHVREVGNYFK 303 (375)
T ss_dssp GGG-TTSCCEEEEE---EHH----HHTTCCTTSCCCSSTTCHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH
T ss_pred ccc-CCCCeEEEEE---cHH----HHhhhcCCCCCCCCCCCHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH
Confidence 999 7999999974 666 6666654222334466778787776666421 166778888889999
Q ss_pred HHHHhhCCCCCccccccCcceeEecCC---CHHHHHHHhhhccEEEeCCC----cEEec-cCCCCcHHHHHHHHHHH
Q 013839 351 QNLEKLGSSLNWEHITNQLGMFCFSGL---TPYQVDRLAKEFHIYMTQDG----RISMA-GVTTGNVNYLANAIHEV 419 (435)
Q Consensus 351 ~~l~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~ll~~~gI~i~pgg----Ris~~-~~~~e~i~~~~~~l~~~ 419 (435)
+.|++++. ...+ ..|+|+|+.+ ..++.+.+ .++||.+.+++ |++++ ..+++++++++++|+++
T Consensus 304 ~~L~~~~~----~~~~-~~g~~~~~~~~~~~~~~~~~l-~~~gi~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 374 (375)
T 2eh6_A 304 EKLKELGK----GKVK-GRGLMLGLELERECKDYVLKA-LEKGLLINCTAGKVLRFLPPLIIQKEHIDRAISVLREI 374 (375)
T ss_dssp HHHHHTTS----SEEE-EETTEEEEECSSCCHHHHHHH-HHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhc----CCce-EEEEEEEEEEcCcHHHHHHHH-HHCCCEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 99988763 2233 3466777765 24455655 46899999863 99875 34889999999999875
No 98
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=99.96 E-value=2.1e-28 Score=239.76 Aligned_cols=323 Identities=14% Similarity=0.044 Sum_probs=222.2
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcC--CCCCC----CCCCcccHHHHHHHHHhHcCCCCccccCCCeeeE
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAG--SEFLE----SISASVSTKMVEESVKLVYGKDSDVVKEGRSAGV 121 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~ 121 (435)
+++..+||+.++|.+. +.++.+++.+.+++.. ..... |+......++++.+++++ +.. ..+
T Consensus 57 ~g~~~ld~~s~~~l~~---~~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~-g~~-------~~i-- 123 (409)
T 3kki_A 57 ASPDDIILQSNDYLAL---ANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFT-GFD-------ECL-- 123 (409)
T ss_dssp CCTTSEECCCSCTTCC---TTCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHH-TCS-------EEE--
T ss_pred CCCceEEeeccCccCC---cCCHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHh-CCC-------eEE--
Confidence 4567889988876333 3444555555555542 11112 232344678999999987 332 222
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEe
Q 013839 122 QALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLH 201 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~ 201 (435)
++.+|++|+..+ +.+++.+||.|+++.|+|..+...+...|++++.++. +|+++|++++.+ .+++++++
T Consensus 124 ~~~sGt~a~~~~--l~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~le~~l~~--~~~~~vi~ 192 (409)
T 3kki_A 124 LSQSGWNANVGL--LQTICQPNTNVYIDFFAHMSLWEGARYANAQAHPFMH-------NNCDHLRMLIQR--HGPGIIVV 192 (409)
T ss_dssp EESCHHHHHHHH--HHHHCCTTCEEEEETTSCHHHHHHHHHTTCEEEEECT-------TCHHHHHHHHHH--HCSCEEEE
T ss_pred EecchHHHHHHH--HHHhcCCCCEEEECCCcCHHHHHHHHHcCCeEEEecC-------CCHHHHHHHHHh--cCCeEEEE
Confidence 467778888877 6777899999999999999999999999998887753 489999999974 24689999
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccE
Q 013839 202 PSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGC 281 (435)
Q Consensus 202 ~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~ 281 (435)
++|+||||.+.+ +++|.++|++||+++|+||+|....++.. .......+....+.++++.|+||.++.+| ||
T Consensus 193 ~~~~nptG~~~~---l~~l~~la~~~~~~li~De~~~~g~~g~~--g~~~~~~~~~~~~~di~~~s~sK~~~~~g---g~ 264 (409)
T 3kki_A 193 DSIYSTLGTIAP---LAELVNISKEFGCALLVDESHSLGTHGPN--GAGLLAELGLTREVHFMTASLAKTFAYRA---GA 264 (409)
T ss_dssp ESBCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSGG--GCCHHHHHTCGGGCSEEEEESSSTTCSSC---EE
T ss_pred CCCCCCCCCcCC---HHHHHHHHHHcCCEEEEECCccccccCCC--CCcchhhcCCCCCCCEEEeecchhhCCCc---eE
Confidence 999999999988 77999999999999999999987544311 11112222111245689999999998664 88
Q ss_pred EEEEecChhHHHHHHHHHHHHhhc--cccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 013839 282 LSILCVDSKQAAAIRSQIQQIARA--MYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSS 359 (435)
Q Consensus 282 ~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 359 (435)
+++ +++ +++.+...... .....+...+.++.+++... +..++.+++++++++++.+.|++++.
T Consensus 265 v~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~-------~~~~~~~~~~~~~~~~l~~~L~~~g~- 329 (409)
T 3kki_A 265 IWC---NNE----VNRCVPFISYPAIFSSTLLPYEAAGLETTLEII-------ESADNRRQHLDRMARKLRIGLSQLGL- 329 (409)
T ss_dssp EEE---SSS----GGGTHHHHCHHHHHSBCCCHHHHHHHHHHHHHH-------HHCHHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred EEE---CHH----HHHHHHHhCcCccccCCCcHHHHHHHHHHHHHH-------hcCHHHHHHHHHHHHHHHHHHHHcCC-
Confidence 864 777 66655553321 12234455555555555422 22357888899999999999998863
Q ss_pred CCccccccCcceeEecCC----CHH-HHHHHhhhccEEEeCC-------C----cEEecc-CCCCcHHHHHHHHHHHHHh
Q 013839 360 LNWEHITNQLGMFCFSGL----TPY-QVDRLAKEFHIYMTQD-------G----RISMAG-VTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 360 ~~~~~~~~~~g~~~~~~~----~~~-~~~~ll~~~gI~i~pg-------g----Ris~~~-~~~e~i~~~~~~l~~~l~~ 422 (435)
.+. ..+.++|+.+ +.+ +...++ ++||.+.+. | ||+++. .+++++++++++|+++++.
T Consensus 330 ---~~~--~~~~~~~~~~~~~~~~~~~~~~L~-~~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~ 403 (409)
T 3kki_A 330 ---TIR--SESQIIGLETGDERNTEKVRDYLE-SNGVFGSVFCRPATSKNKNIIRLSLNSDVNDEQIAKIIEVCSDAVNY 403 (409)
T ss_dssp ---CCC--CSSSEEEEEEESHHHHHHHHHHHH-HTTEECEEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ---ccC--CCCCEEEEEeCCHHHHHHHHHHHH-HCCceEeeeCCCCcCCCCcEEEEEccCCCCHHHHHHHHHHHHHHHhc
Confidence 333 3556666644 123 445554 569999642 2 999853 3789999999999999875
Q ss_pred h
Q 013839 423 E 423 (435)
Q Consensus 423 ~ 423 (435)
.
T Consensus 404 ~ 404 (409)
T 3kki_A 404 G 404 (409)
T ss_dssp S
T ss_pred C
Confidence 3
No 99
>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A
Probab=99.96 E-value=3.7e-29 Score=244.79 Aligned_cols=333 Identities=12% Similarity=0.045 Sum_probs=221.4
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCC--CCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCC
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGS--EFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALS 125 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~g 125 (435)
++...+|++.|.+.+.-++ .++.+.+.+.+++... ....| +.....++++.+++++ +. +++. +++|
T Consensus 37 ~g~~~lD~~~~~~~~~lg~-~~p~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~-~~-------~~v~--~~~g 104 (406)
T 4adb_A 37 QGKEYIDFAGGIAVNALGH-AHPELREALNEQASKFWHTGNGY-TNEPVLRLAKKLIDAT-FA-------DRVF--FCNS 104 (406)
T ss_dssp TCCEEEESSHHHHTCTTCB-TCHHHHHHHHHHHTTCSCCCTTS-CCHHHHHHHHHHHHHS-SC-------SEEE--EESS
T ss_pred CCCEEEECCCchhhcccCC-CCHHHHHHHHHHHHhcccccCCc-CCHHHHHHHHHHHhhC-CC-------CeEE--EeCc
Confidence 5678999999954222332 2344444444444421 11223 3344667888888776 22 3666 8999
Q ss_pred chhHHHHHHHHHHHhC-------CC-CEEEEcCCCChhhHHHHhhCCCCeee----eeecCCCCCC----cChHhHHHHh
Q 013839 126 GTGACRLFAEFQRRFH-------PE-SHIYFPDPTWSNHHNIWRDAQIPERT----YHYYDPDSKS----LDFAALMDDI 189 (435)
Q Consensus 126 g~~a~~~~~~~~~~~~-------~g-d~Vlv~~p~y~~~~~~~~~~g~~~~~----v~~~~~~~~~----~d~e~l~~~i 189 (435)
|++|+.++ +..++. +| |+|++++|+|.++.......+..... .+. ..+.. .|+++|++++
T Consensus 105 g~~a~~~a--l~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~l~~~l 180 (406)
T 4adb_A 105 GAEANEAA--LKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPL--PADIRHAAYNDINSASALI 180 (406)
T ss_dssp HHHHHHHH--HHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSC--CSSEEEECTTCHHHHHTTC
T ss_pred HHHHHHHH--HHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCCC--CCCceEeCCCcHHHHHHHh
Confidence 99999988 443332 55 99999999999886555544443221 111 01111 4789999888
Q ss_pred hcCCCCcEEEEeCCCCCCCCCCC--CHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEec
Q 013839 190 KNAPDSSFFLLHPSAHNPTGVDP--TEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQS 267 (435)
Q Consensus 190 ~~~~~~~~~v~~~~p~NPtG~~~--~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s 267 (435)
. +++++++++ |+||||.++ +.+++++|.++|++||+++|+||+|.++.+.+. ....... +...+++ |
T Consensus 181 ~---~~~~~v~~~-p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~---~~~~~~~-~~~~d~~---t 249 (406)
T 4adb_A 181 D---DSTCAVIVE-PIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGE---LYAYMHY-GVTPDLL---T 249 (406)
T ss_dssp S---TTEEEEEEC-SEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SSHHHHH-TCCCSEE---E
T ss_pred c---CCeEEEEEe-CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccch---hHHHHhc-CCCCCEE---E
Confidence 7 678899888 999999988 999999999999999999999999988876542 1122222 3233344 6
Q ss_pred ccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHH
Q 013839 268 YAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRT 347 (435)
Q Consensus 268 ~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 347 (435)
|||.++ +|+|+||+++ +++ +++.+.........+.+.+.+.++.++|.... + ++.+++++++++
T Consensus 250 ~sK~~~-~G~r~G~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~------~--~~~~~~~~~~~~ 313 (406)
T 4adb_A 250 TAKALG-GGFPVGALLA---TEE----CARVMTVGTHGTTYGGNPLASAVAGKVLELIN------T--PEMLNGVKQRHD 313 (406)
T ss_dssp ECGGGG-TTSCCEEEEE---CHH----HHHTCCTTSSCCSSTTCHHHHHHHHHHHHHHS------S--HHHHHHHHHHHH
T ss_pred echhhc-CCCCeEEEEE---cHH----HHhhhccCCcCCCCCCCHHHHHHHHHHHHHHH------h--cCHHHHHHHHHH
Confidence 799999 9999999864 888 77777665555567788898888888775321 1 456667777777
Q ss_pred HHHHHHHhhCCC-CCccccccCcceeEecCC------CHHHHHHHhhhccEEEeCCC----cEEec-cCCCCcHHHHHHH
Q 013839 348 TLRQNLEKLGSS-LNWEHITNQLGMFCFSGL------TPYQVDRLAKEFHIYMTQDG----RISMA-GVTTGNVNYLANA 415 (435)
Q Consensus 348 ~l~~~l~~~~~~-~~~~~~~~~~g~~~~~~~------~~~~~~~ll~~~gI~i~pgg----Ris~~-~~~~e~i~~~~~~ 415 (435)
.+.+.|++++.. ..+... +..|.++|+.+ +.+.+.+.+.++||.+.|+| |++++ ..+++++++++++
T Consensus 314 ~l~~~l~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~iRi~~~~~~~~e~i~~~~~~ 392 (406)
T 4adb_A 314 WFVERLNTINHRYGLFSEV-RGLGLLIGCVLNADYAGQAKQISQEAAKAGVMVLIAGGNVVRFAPALNVSEEEVTTGLDR 392 (406)
T ss_dssp HHHHHHHHHHHHHCCEEEE-EEETTEEEEEECTTTTTCHHHHHHHHHHTTEECEESSTTEEEECCCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCceEE-EEEEEEEEEEEeCCcHHHHHHHHHHHHHCCcEEeecCCCeEEEECCCCCCHHHHHHHHHH
Confidence 777777665310 001112 22355665532 34444334456799999875 88543 2388999999999
Q ss_pred HHHHHHhhh
Q 013839 416 IHEVTRSEQ 424 (435)
Q Consensus 416 l~~~l~~~~ 424 (435)
|++++++..
T Consensus 393 l~~~l~~~~ 401 (406)
T 4adb_A 393 FAAACEHFV 401 (406)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998765
No 100
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Probab=99.96 E-value=8.8e-28 Score=238.78 Aligned_cols=337 Identities=12% Similarity=0.047 Sum_probs=222.0
Q ss_pred CCCCeeeeeccee-cCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCc
Q 013839 48 PSPYKINLGVGAY-RDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSG 126 (435)
Q Consensus 48 ~~~~~i~l~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg 126 (435)
.+.++++|+.|.+ .|...+..+.....++..++..+ ...|.+..+..+|++++++++ +. ++++ +++||
T Consensus 31 ~g~~~~~l~~~~~ylD~~~~~~~~~~~~~~~~a~~~~-~~~y~~~~~~~~l~~~la~~~-~~-------~~~~--~~~~g 99 (456)
T 2ez2_A 31 AGYNTFLLNSKDIYIDLLTDSGTNAMSDKQWAGMMMG-DEAYAGSENFYHLERTVQELF-GF-------KHIV--PTHQG 99 (456)
T ss_dssp TTTCGGGSCGGGCSEECSCSSSCCCCCHHHHHHHTTC-CCCSSSCHHHHHHHHHHHHHH-CC-------SEEE--EESSH
T ss_pred CCCCcccCCcccceeeeccccCCccCCHHHHHHhhcc-hhhcccChhHHHHHHHHHHHh-CC-------CcEE--EeCCc
Confidence 5667888888863 34322221111112233444333 345888889999999999998 32 1455 89999
Q ss_pred hhHHHHHHHHHHHhCCCCEEEEcCCCC-hhhHHHHhhCCCCeeeeeecCC---C-----CCCcChHhHHHHhhcCC-CCc
Q 013839 127 TGACRLFAEFQRRFHPESHIYFPDPTW-SNHHNIWRDAQIPERTYHYYDP---D-----SKSLDFAALMDDIKNAP-DSS 196 (435)
Q Consensus 127 ~~a~~~~~~~~~~~~~gd~Vlv~~p~y-~~~~~~~~~~g~~~~~v~~~~~---~-----~~~~d~e~l~~~i~~~~-~~~ 196 (435)
++|+.++ +.+++.+|| +++.|+| ..+...+...|++++.+++.+. + ++.+|+++|++++++.. ...
T Consensus 100 t~a~~~a--l~~l~~~gd--i~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t~~~~ 175 (456)
T 2ez2_A 100 RGAENLL--SQLAIKPGQ--YVAGNMYFTTTRYHQEKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGAENI 175 (456)
T ss_dssp HHHHHHH--HHHHCCTTC--EEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGE
T ss_pred HHHHHHH--HHHhCCCCC--EeccccccchhHHHHHHcCCEEEEecccccccccccccccCCCCHHHHHHHHHhccccce
Confidence 9999988 666688999 7889999 7778888999999999887421 1 36889999999997321 124
Q ss_pred EEEEeCCCCC-CCCCCCCHHHHHHHHHHHHhcCceeeeeccCCC----------ccCCCCcccHHHHHHhhhcCCeEEEE
Q 013839 197 FFLLHPSAHN-PTGVDPTEEQWREISYQFKVKGHFPFFDMAYQG----------FASGDLDKDAQAIRIFLEDEHLIGCA 265 (435)
Q Consensus 197 ~~v~~~~p~N-PtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~----------~~~~~~~~~~~~~~~~~~~~~~~i~~ 265 (435)
+++++++|+| |||.+++.+++++|.++|++||+++|+||+|.. +.+.+ ....++........+++++
T Consensus 176 ~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g--~~~~~~~~~~~~~~d~~~~ 253 (456)
T 2ez2_A 176 AYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFEN--KSIAEIVHEMFSYADGCTM 253 (456)
T ss_dssp EEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTT--SCHHHHHHHHHTTCSEEEE
T ss_pred eEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCC--cchhhhhhhhcccCCEEEE
Confidence 8999999999 999999999999999999999999999999875 34443 1222221011112234544
Q ss_pred ecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhcc-----ccCCChhHHHH-HHHHhCChhhHHHHHHHH-HHH
Q 013839 266 QSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAM-----YGSPPVHGILL-VATILSDPNLKSLWIDEV-KIM 338 (435)
Q Consensus 266 ~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~q~~-~~~~l~~~~l~~~~~~~~-~~~ 338 (435)
|++|.++ +| |+||++ +.+++ +++.+....... ..+.+.....+ +...+ +.+ +..
T Consensus 254 -S~kk~~~-~~-~gG~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~----------~~~~~~~ 314 (456)
T 2ez2_A 254 -SGKKDCL-VN-IGGFLC--MNDDE----MFSSAKELVVVYEGMPSYGGLAGRDMEAMAIGLR----------EAMQYEY 314 (456)
T ss_dssp -ETTTTTC-CS-SCEEEE--ESCHH----HHHHHHHHHHHHTCCTTTTTCCHHHHHHHHHHHH----------HHTCHHH
T ss_pred -eCcccCC-CC-ceeEEE--ECCHH----HHHHHHHHHhhccCcccccCcchhHHHHHHHHHH----------HHhHHHH
Confidence 7888765 67 789985 43567 666665543221 12223222222 21222 111 234
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCC-------CH-HH-----HHHHhhhccEEEeC-C--------
Q 013839 339 ADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL-------TP-YQ-----VDRLAKEFHIYMTQ-D-------- 396 (435)
Q Consensus 339 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~-------~~-~~-----~~~ll~~~gI~i~p-g-------- 396 (435)
.++..++.+.+.+.|++.+ +.+..+.+++++|+.+ +. ++ ...+++++||.+.+ |
T Consensus 315 ~~~~~~~~~~l~~~L~~~g----~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~~~ 390 (456)
T 2ez2_A 315 IEHRVKQVRYLGDKLKAAG----VPIVEPVGGHAVFLDARRFCEHLTQDEFPAQSLAASIYVETGVRSMERGIISAGRNN 390 (456)
T ss_dssp HHHHHHHHHHHHHHHHHTT----CCBCSSCCSSEEEEEHHHHTTTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCBCT
T ss_pred HHHHHHHHHHHHHHHhcCC----CccccCCCceEEEEEhHHhcCCCChhhccHHHHHHHHHHhcCeeeecccccccccCc
Confidence 4445556677788887765 3455677788888642 22 23 44554678998643 1
Q ss_pred ----------C--cEEecc--CCCCcHHHHHHHHHHHHHhhh
Q 013839 397 ----------G--RISMAG--VTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 397 ----------g--Ris~~~--~~~e~i~~~~~~l~~~l~~~~ 424 (435)
+ ||+++. .+++++++++++|++++++..
T Consensus 391 ~~g~~~~~~~~~iRis~~~~~~t~e~i~~~~~~l~~~l~~~~ 432 (456)
T 2ez2_A 391 VTGEHHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQHKE 432 (456)
T ss_dssp TTCSBCCCSCCEEEEECCTTTCCHHHHHHHHHHHHHHHHTGG
T ss_pred cccccccCCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhhh
Confidence 2 899863 488999999999999987644
No 101
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=99.96 E-value=3.9e-29 Score=243.14 Aligned_cols=323 Identities=14% Similarity=0.065 Sum_probs=223.5
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcCC---CCC---CCCC-CcccHHHHHHHHHhHcCCCCccccCCCeeeEe
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGS---EFL---ESIS-ASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQ 122 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~Y~~-~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~ 122 (435)
++.+.|+.+.+ + +.++.+.+.+.+.+... ... .|+. ..+..++++++++++ +.. ++++. +
T Consensus 15 ~~~i~l~~~~~----~-~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~-g~~-----~~~v~--~ 81 (390)
T 1elu_A 15 ANKTYFNFGGQ----G-ILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETF-NVD-----PNTIT--I 81 (390)
T ss_dssp TTSEECCTTTC----C-CCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHT-TSC-----GGGEE--E
T ss_pred CCeEEecCCcc----C-CCCHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHc-CCC-----HHHEE--E
Confidence 45788888763 1 22223333333333211 011 3544 467899999999998 332 45777 8
Q ss_pred cCCchhHHHHHHHHHHH-hCCCCEEEEcCCCChhhHHH----HhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcE
Q 013839 123 ALSGTGACRLFAEFQRR-FHPESHIYFPDPTWSNHHNI----WRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSF 197 (435)
Q Consensus 123 t~gg~~a~~~~~~~~~~-~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~ 197 (435)
++||++|+.++ +..+ +.+||+|+++.|+|..+... ++..|++++.++...++++.+|++.|++.+. ++++
T Consensus 82 ~~g~t~a~~~~--~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~---~~~~ 156 (390)
T 1elu_A 82 TDNVTTGCDIV--LWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLG---PKTR 156 (390)
T ss_dssp ESSHHHHHHHH--HHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCC---TTEE
T ss_pred eCChHHHHHHH--HhCCCCCCCCEEEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCccchHHHHHHhcC---CCce
Confidence 99999999988 6666 78999999999999987653 4667999999987422567899999999887 5789
Q ss_pred EEEeCCCCCCCCCCCCHHHHHHHHHHHH----hcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEeccccccc
Q 013839 198 FLLHPSAHNPTGVDPTEEQWREISYQFK----VKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMG 273 (435)
Q Consensus 198 ~v~~~~p~NPtG~~~~~~~l~~i~~~~~----~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g 273 (435)
++++++|+||||.+++ +++|.++|+ +||+++|+|++|...... . . + .....++++.|+||.++
T Consensus 157 ~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~~~~~li~Dea~~~g~~~-~-----~---~-~~~~~d~~~~s~~K~~~ 223 (390)
T 1elu_A 157 LVILSHLLWNTGQVLP---LAEIMAVCRRHQGNYPVRVLVDGAQSAGSLP-L-----D---F-SRLEVDYYAFTGHKWFA 223 (390)
T ss_dssp EEEEESBCTTTCCBCC---HHHHHHHHHHCCSSSCCEEEEECTTTBTTBC-C-----C---T-TTSCCSEEEEESSSTTC
T ss_pred EEEEeccccCCceecC---HHHHHHHHhhhhhhcCcEEEEEcccccCCcC-C-----C---h-hhcCCCEEEcccccccc
Confidence 9999999999999998 668899999 999999999998642211 1 1 1 12245788999999433
Q ss_pred ccCCcccEEEEEecChhHHHHHHHHHHHHh----------------------hccccCCChhHHHHHHHHhCChhhHHHH
Q 013839 274 LYGHRVGCLSILCVDSKQAAAIRSQIQQIA----------------------RAMYGSPPVHGILLVATILSDPNLKSLW 331 (435)
Q Consensus 274 ~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~----------------------~~~~~~~~~~~q~~~~~~l~~~~l~~~~ 331 (435)
.|.++||+++ +++ +++.+.... .....+++...+.++..++..-. +
T Consensus 224 -~~~g~G~~~~---~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~--~-- 291 (390)
T 1elu_A 224 -GPAGVGGLYI---HGD----CLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQ--R-- 291 (390)
T ss_dssp -CCTTCEEEEE---CTT----TGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHH--H--
T ss_pred -CCCceEEEEE---CHH----hHhhcCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHH--H--
Confidence 5677999974 666 655544311 12233456666666656654211 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccc---ccCcceeEec---CCCHHHHHHHhhhccEEEeCCC-----cEE
Q 013839 332 IDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHI---TNQLGMFCFS---GLTPYQVDRLAKEFHIYMTQDG-----RIS 400 (435)
Q Consensus 332 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~---~~~~g~~~~~---~~~~~~~~~ll~~~gI~i~pgg-----Ris 400 (435)
..++++.+++++++++.+.+.|++++ ++.+. .+.++++.|. +.+.+.+.+.|.++||.+.+++ ||+
T Consensus 292 ~~~~~~~~~~~~~~~~~l~~~L~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~iRis 368 (390)
T 1elu_A 292 QGTAEERYQAICQRSEFLWRGLNQLP---HVHCLATSAPQAGLVSFTVDSPLGHRAIVQKLEEQRIYLRTIADPDCIRAC 368 (390)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHST---TEEESCSSCCSSSEEEEEECSSSCHHHHHHHHHHTTEECEEETTTTEEEEE
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHhcC---CcEEecCccccccEEEEEcCCCCCHHHHHHHHHHCCEEEEecCCCCeEEEe
Confidence 02367788899999999999998873 14454 3457766662 2355545334467899999863 999
Q ss_pred ec-cCCCCcHHHHHHHHHH
Q 013839 401 MA-GVTTGNVNYLANAIHE 418 (435)
Q Consensus 401 ~~-~~~~e~i~~~~~~l~~ 418 (435)
+. ..+++++++++++|++
T Consensus 369 ~~~~~~~~~i~~~~~~l~~ 387 (390)
T 1elu_A 369 CHYITDEEEINHLLARLAD 387 (390)
T ss_dssp CCTTCCHHHHHHHHHHHTT
T ss_pred cccCCCHHHHHHHHHHHHh
Confidence 84 3488999999988865
No 102
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=99.96 E-value=1.5e-28 Score=238.28 Aligned_cols=291 Identities=15% Similarity=0.149 Sum_probs=209.6
Q ss_pred CcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChh--hHHHHhhCCCCee
Q 013839 91 ASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSN--HHNIWRDAQIPER 168 (435)
Q Consensus 91 ~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~--~~~~~~~~g~~~~ 168 (435)
.....++++.+++++ +.... ++++. +++||++|+. + +..++.+||+|++++|+|.. +...++..|++++
T Consensus 34 ~~~~~~~~~~la~~~-~~~~~---~~~v~--~~~g~t~al~-~--~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~ 104 (384)
T 3zrp_A 34 VEALAYSLKGLRYVM-GASKN---YQPLI--IPGGGTSAME-S--VTSLLKPNDKILVVSNGVFGDRWEQIFKRYPVNVK 104 (384)
T ss_dssp HHHHHHHHHHHHHHH-TCCTT---SEEEE--EESCHHHHHH-H--GGGGCCTTCEEEEECSSHHHHHHHHHHTTSSCEEE
T ss_pred HHHHHHHHHHHHHHh-CCCCC---CcEEE--EcCCcHHHHH-H--HHhhcCCCCEEEEecCCcchHHHHHHHHHcCCcEE
Confidence 345678899999987 33211 25677 8999999999 7 67778999999999999965 5566678899999
Q ss_pred eeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCccc
Q 013839 169 TYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKD 248 (435)
Q Consensus 169 ~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~ 248 (435)
.++. +.++.+|++++++++.+ .+++++++++|+||||..++ +++|.++|++||+++|+|++|...... .
T Consensus 105 ~v~~--~~~~~~d~~~l~~~i~~--~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~~-~--- 173 (384)
T 3zrp_A 105 VLRP--SPGDYVKPGEVEEEVRK--SEYKLVALTHVETSTGVREP---VKDVINKIRKYVELIVVDGVSSVGAEE-V--- 173 (384)
T ss_dssp EECC--STTCCCCHHHHHHHHHH--SCEEEEEEESEETTTTEECC---HHHHHHHHGGGEEEEEEECTTTTTTSC-C---
T ss_pred EecC--CCCCCCCHHHHHHHHHh--CCCcEEEEeCCCCCCceECc---HHHHHHHHHhcCCEEEEECcccccCcc-c---
Confidence 9987 33567999999999983 26899999999999999987 668999999999999999997543321 1
Q ss_pred HHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHH-------------HHHh---------hcc
Q 013839 249 AQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQI-------------QQIA---------RAM 306 (435)
Q Consensus 249 ~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l-------------~~~~---------~~~ 306 (435)
++ ...+.++++.|+||.++ .+.++||+++ +++ +++.+ .... ...
T Consensus 174 --~~----~~~~~d~~~~s~~K~~~-~~~g~g~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (384)
T 3zrp_A 174 --KA----EEWNVDVYLTASQKALG-SAAGLGLLLL---SPK----ALSILDSQNSIAGYYLDLRNWLPVMRGAEEGKAA 239 (384)
T ss_dssp --CT----TTTTCSEEEEETTSTTC-CCSSEEEEEE---CHH----HHHHHHHCCCSCCSTTCHHHHHHHHHHHHTTCCC
T ss_pred --cc----cccCCCEEEecCccccc-CCCceEEEEE---CHH----HHHHhcCCCCCCcccccHHHHHHHHHhhcccCCC
Confidence 01 12245789999999885 2344899974 777 44444 1111 111
Q ss_pred c-cCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccC----cceeEecCC---C
Q 013839 307 Y-GSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQ----LGMFCFSGL---T 378 (435)
Q Consensus 307 ~-~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~----~g~~~~~~~---~ 378 (435)
. .+++...+.++..++.... ...+++.+++++++++++.+.|++++ +.+..+. .+.++|+.+ +
T Consensus 240 ~~g~~~~~~~~a~~~al~~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~ 310 (384)
T 3zrp_A 240 YFATPPVHVILQLAEAFRLIE-----KEGIENRIKRHTMVASAIRAGLEALG----LEIVARRPESYSNTVTGVILKVAD 310 (384)
T ss_dssp CSSCCCHHHHHHHHHHHHHHH-----HHCHHHHHHHHHHHHHHHHHHHHHTT----CCBSCSSGGGBCSSEEEEECSSSC
T ss_pred cCCCCCHHHHHHHHHHHHHHH-----hcCHHHHHHHHHHHHHHHHHHHHHCC----CeEccCcccccCccEEEEECCCCC
Confidence 1 2555566666655654221 13367888999999999999999885 3444444 455555533 4
Q ss_pred HHHHHHHhhhccEEEeCCC-------cEEecc-CCCCcHHHHHHHHHHHHHhhh
Q 013839 379 PYQVDRLAKEFHIYMTQDG-------RISMAG-VTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 379 ~~~~~~ll~~~gI~i~pgg-------Ris~~~-~~~e~i~~~~~~l~~~l~~~~ 424 (435)
.+.+.+.|.++||.+.+|. ||++.. .+++++++++++|++++++..
T Consensus 311 ~~~~~~~l~~~gi~v~~g~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~~ 364 (384)
T 3zrp_A 311 PQKVLAGTVNEGVEFAPGVHPAFKYFRIGHMGWVTPNDAIIAISVIERTLRKLG 364 (384)
T ss_dssp HHHHHHHHHTTTCCCEECCCTTCCEEEEECCSSCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCEEEecCCCCCcCEEEEeccccCCHHHHHHHHHHHHHHHHHcC
Confidence 5555444456799999874 999753 378999999999999998765
No 103
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=99.96 E-value=3.4e-28 Score=233.68 Aligned_cols=329 Identities=12% Similarity=0.070 Sum_probs=220.8
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCch
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~ 127 (435)
..+..|+|+.+.+ + +.+ +.+.+++..... .|.+..|..++++++++++....+ ..++++. +++||+
T Consensus 11 ~~p~~i~l~~~~~----~-~~~-~~v~~a~~~~~~----~~~~~~g~~~~~~~~~~~l~~~~g--~~~~~v~--~~~g~t 76 (359)
T 1svv_A 11 AKPKPYSFVNDYS----V-GMH-PKILDLMARDNM----TQHAGYGQDSHCAKAARLIGELLE--RPDADVH--FISGGT 76 (359)
T ss_dssp ----CEECSCSCS----S-CCC-HHHHHHHHHHTT----CCCCSTTCSHHHHHHHHHHHHHHT--CTTSEEE--EESCHH
T ss_pred CCCeeEEecCCCc----C-CCC-HHHHHHHHHHHh----hccccccccHHHHHHHHHHHHHhC--CCCccEE--EeCCch
Confidence 3467899998663 2 233 334444443322 266666777777777777622111 1156777 899999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCChhhHH--HHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcC----CCCcEEEEe
Q 013839 128 GACRLFAEFQRRFHPESHIYFPDPTWSNHHN--IWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNA----PDSSFFLLH 201 (435)
Q Consensus 128 ~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~--~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~----~~~~~~v~~ 201 (435)
+|+.++ +..++.+||+|++++|+|..+.. .++..|++++.++. + ++.+|+++|++.+++. ..+++++++
T Consensus 77 ~a~~~~--~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~-~--~~~~d~~~l~~~l~~~~~~~~~~~~~v~~ 151 (359)
T 1svv_A 77 QTNLIA--CSLALRPWEAVIATQLGHISTHETGAIEATGHKVVTAPC-P--DGKLRVADIESALHENRSEHMVIPKLVYI 151 (359)
T ss_dssp HHHHHH--HHHHCCTTEEEEEETTSHHHHSSTTHHHHTTCCEEEECC-T--TSCCCHHHHHHHHHHSCSTTSCEEEEEEE
T ss_pred HHHHHH--HHHHhCCCCEEEEcccchHHHHHHHHHhcCCCeeEEEeC-C--CCeecHHHHHHHHHHHHhccCCCceEEEE
Confidence 999998 66667899999999999998877 47888999999986 2 5789999999999742 113789999
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCC--CCcccHHHHHHhhhcCCeEEEEecccccccccCCcc
Q 013839 202 PSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASG--DLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRV 279 (435)
Q Consensus 202 ~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~Rv 279 (435)
++| ||||.+++.+++++|.++|++||+++|+||+|.++..+ +.......+.. ...+++.|.+|..+. .++
T Consensus 152 ~~~-~ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~-----~~d~~~~s~~K~g~~--~~~ 223 (359)
T 1svv_A 152 SNT-TEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIAR-----LTDMFYIGATKAGGM--FGE 223 (359)
T ss_dssp ESS-CTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHH-----HCSEEEEECTTTTCS--SCE
T ss_pred EcC-CCCceecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcchhhhhhhh-----cCCEEEEecccCCCC--Cce
Confidence 998 89999999999999999999999999999998544222 11111111111 124677889997542 456
Q ss_pred cEEEEEecChhHHHHHHHHHHHHh--hccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 013839 280 GCLSILCVDSKQAAAIRSQIQQIA--RAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLG 357 (435)
Q Consensus 280 G~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 357 (435)
|++++ +++ +++.+.... .......+......+..++.+. ..++.+++++++++++.+.|+..+
T Consensus 224 g~l~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~~~~~~~l~~~L~~~~ 288 (359)
T 1svv_A 224 ALIIL---NDA----LKPNARHLIKQRGALMAKGWLLGIQFEVLMKDN--------LFFELGAHSNKMAAILKAGLEACG 288 (359)
T ss_dssp EEEEC---SGG----GCTTHHHHHHHTTCCCTTTHHHHHHHHHHTSTT--------HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEE---ccc----HHHHHHHHHhcCCcccccchhhHHHHHHHHhhh--------hHHHHHHHHHHHHHHHHHHhccCC
Confidence 88853 777 555554432 1111111222222334455542 245677888889999999994333
Q ss_pred CCCCccccccCcceeEecCCCHHHHHHHhhhccEEEeC---CC----cEEecc-CCCCcHHHHHHHHHHHHHh
Q 013839 358 SSLNWEHITNQLGMFCFSGLTPYQVDRLAKEFHIYMTQ---DG----RISMAG-VTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 358 ~~~~~~~~~~~~g~~~~~~~~~~~~~~ll~~~gI~i~p---gg----Ris~~~-~~~e~i~~~~~~l~~~l~~ 422 (435)
+.+..+.+++|+|+.+..++.+.+++++||.+.+ .+ ||+++. .+++++++++++|++++++
T Consensus 289 ----~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 357 (359)
T 1svv_A 289 ----IRLAWPSASNQLFPILENTMIAELNNDFDMYTVEPLKDGTCIMRLCTSWATEEKECHRFVEVLKRLVAS 357 (359)
T ss_dssp ----CCBSSCCSSSEECBEEEHHHHHHHTTTEECEEEEEETTTEEEEEEECCTTCCHHHHHHHHHHHHHC---
T ss_pred ----eEEccCCccceEEEEcCHHHHHHHHHhcCEEEEecccCCCceEEEEccCcCCHHHHHHHHHHHHHHHhc
Confidence 5566677888999888777777776655999854 22 998643 3789999999999988754
No 104
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=99.96 E-value=2.6e-28 Score=237.58 Aligned_cols=289 Identities=9% Similarity=0.006 Sum_probs=206.3
Q ss_pred CcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhh--HHHHhhCCCCee
Q 013839 91 ASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNH--HNIWRDAQIPER 168 (435)
Q Consensus 91 ~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~--~~~~~~~g~~~~ 168 (435)
..+..++++.+++++ +.. +++++ +|+||++|+.++ +..++.+||+|++++|+|..+ ...++..|++++
T Consensus 41 ~~~~~~l~~~la~~~-g~~-----~~~v~--~t~g~t~a~~~~--~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~ 110 (392)
T 2z9v_A 41 QLLYEKVVDKAQKAM-RLS-----NKPVI--LHGEPVLGLEAA--AASLISPDDVVLNLASGVYGKGFGYWAKRYSPHLL 110 (392)
T ss_dssp HHHHHHHHHHHHHHT-TCS-----SCCEE--ESSCTHHHHHHH--HHHHCCTTCCEEEEESSHHHHHHHHHHHHHCSCEE
T ss_pred HHHHHHHHHHHHHHh-CCC-----CCEEE--EeCCchHHHHHH--HHHhcCCCCEEEEecCCcccHHHHHHHHHcCCceE
Confidence 446789999999997 332 46787 899999999998 666688999999999999775 344556799999
Q ss_pred eeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCccc
Q 013839 169 TYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKD 248 (435)
Q Consensus 169 ~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~ 248 (435)
.++. + +++.+|+++|++++++. ++++++++++|+||||..++ +++|.++|++||+++|+|++|...... .
T Consensus 111 ~v~~-~-~~~~~d~~~l~~~l~~~-~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~g~~~-~--- 180 (392)
T 2z9v_A 111 EIEV-P-YNEAIDPQAVADMLKAH-PEITVVSVCHHDTPSGTINP---IDAIGALVSAHGAYLIVDAVSSFGGMK-T--- 180 (392)
T ss_dssp EEEC-C-TTSCCCHHHHHHHHHHC-TTCCEEEEESEEGGGTEECC---HHHHHHHHHHTTCEEEEECTTTBTTBS-C---
T ss_pred EeeC-C-CCCCCCHHHHHHHHhcC-CCCcEEEEeccCCCCceecc---HHHHHHHHHHcCCeEEEEcccccCCcc-c---
Confidence 9987 2 34579999999999642 46789999999999999987 569999999999999999998632211 1
Q ss_pred HHHHHHhhhcCCeEEEEecccccc-cccCCcccEEEEEecChhHHHHHHHHHHHHh--------------------hccc
Q 013839 249 AQAIRIFLEDEHLIGCAQSYAKSM-GLYGHRVGCLSILCVDSKQAAAIRSQIQQIA--------------------RAMY 307 (435)
Q Consensus 249 ~~~~~~~~~~~~~~i~~~s~SK~~-g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~--------------------~~~~ 307 (435)
++. . .+.++++.|+||.+ +.+| +||+++ +++ +++.++... ....
T Consensus 181 --~~~---~-~~~d~~~~s~sK~~~~~~g--~G~l~~---~~~----~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 245 (392)
T 2z9v_A 181 --HPE---D-CKADIYVTGPNKCLGAPPG--LTMMGV---SER----AWAKMKANPLAPRASMLSIVDWENAWSRDKPFP 245 (392)
T ss_dssp --CGG---G-GTCSEEEECSSSTTCCCSC--CEEEEE---CHH----HHHHHHTCTTSCCSSTTCSGGGTTTTSTTSCCS
T ss_pred --ccc---c-ccceEEEecCcccccCCCc--eeEEEE---CHH----HHHHhhhccCCCCceeccHHHHHhhhcccCCCC
Confidence 111 1 13568899999964 4455 599974 777 666665311 1112
Q ss_pred cCCChhHHHHHHHHhCChhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhCCCCCccccc-cC---cceeEecC----CC
Q 013839 308 GSPPVHGILLVATILSDPNLKSLWIDE-VKIMADRIQRKRTTLRQNLEKLGSSLNWEHIT-NQ---LGMFCFSG----LT 378 (435)
Q Consensus 308 ~~~~~~~q~~~~~~l~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~---~g~~~~~~----~~ 378 (435)
.+++...+.++..++... .+. +++.+++++++++++.+.|++++. .+.. +. .+.++|+. .+
T Consensus 246 ~~~~~~~~~a~~~al~~~------~~~g~~~~~~~~~~~~~~l~~~L~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~ 315 (392)
T 2z9v_A 246 FTPSVSEINGLDVALDLY------LNEGPEAVWARHALTAKAMRAGVTAMGL----SVWAASDSIASPTTTAVRTPDGVD 315 (392)
T ss_dssp SCCCHHHHHHHHHHHHHH------HHHCHHHHHHHHHHHHHHHHHHHHHTTC----CBSSSSGGGBCTTEEEEECCTTCC
T ss_pred CCCCHHHHHHHHHHHHHH------HhccHHHHHHHHHHHHHHHHHHHHHcCC----eeccCCccccCCceEEEECCCCCC
Confidence 334555555555555421 233 677888999999999999988753 3433 21 34455543 34
Q ss_pred HHHH-HHHhhhccEEEeCCC--------cEEe-c-cCCCCcHHHHHHHHHHHHHhhh
Q 013839 379 PYQV-DRLAKEFHIYMTQDG--------RISM-A-GVTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 379 ~~~~-~~ll~~~gI~i~pgg--------Ris~-~-~~~~e~i~~~~~~l~~~l~~~~ 424 (435)
.+.+ +.+++++||.+.+|. |+++ + ..+++++++++++|+++++++.
T Consensus 316 ~~~l~~~L~~~~gi~v~~g~~~~~~~~lRi~~~~~~~~~~~i~~~~~~l~~~~~~~~ 372 (392)
T 2z9v_A 316 EKALRQAARARYGVVFSSGRGETLGKLTRIGHMGPTAQPIYAIAALTALGGAMNAAG 372 (392)
T ss_dssp HHHHHHHHHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCEEEecCCCCCCCCeEEEeCcccccCHHHHHHHHHHHHHHHHHcC
Confidence 4444 555443499999862 9994 5 4589999999999999987654
No 105
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=99.96 E-value=2.1e-28 Score=238.64 Aligned_cols=289 Identities=10% Similarity=0.090 Sum_probs=209.9
Q ss_pred ccHHHHHHHHHhHcCCCCccccCC-CeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhH--HHHhhCCCCeee
Q 013839 93 VSTKMVEESVKLVYGKDSDVVKEG-RSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHH--NIWRDAQIPERT 169 (435)
Q Consensus 93 g~~~lr~~ia~~l~~~~~~~~~~~-~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~--~~~~~~g~~~~~ 169 (435)
...++|+++++++. .. ++ ++. +++||++|+.++ +..++.+||+|++++|+|..+. ..++..|++++.
T Consensus 52 ~~~~l~~~la~~~~-~~-----~~~~v~--~~~g~t~al~~~--~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~ 121 (396)
T 2ch1_A 52 TMDEVKDGLRYIFQ-TE-----NRATMC--VSGSAHAGMEAM--LSNLLEEGDRVLIAVNGIWAERAVEMSERYGADVRT 121 (396)
T ss_dssp HHHHHHHHHHHHHT-CC-----CSCEEE--ESSCHHHHHHHH--HHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHhC-CC-----CCcEEE--ECCcHHHHHHHH--HHHhcCCCCeEEEEcCCcccHHHHHHHHHcCCceEE
Confidence 37899999999983 32 34 677 899999999998 6667889999999999999884 467888999999
Q ss_pred eeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccH
Q 013839 170 YHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDA 249 (435)
Q Consensus 170 v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~ 249 (435)
++. ++++.+|++++++++++. ++++|++++|+||||.+++ +++|.++|++||+++|+|++|. +...+.
T Consensus 122 v~~--~~~~~~d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~li~Dea~~-~g~~~~---- 189 (396)
T 2ch1_A 122 IEG--PPDRPFSLETLARAIELH--QPKCLFLTHGDSSSGLLQP---LEGVGQICHQHDCLLIVDAVAS-LCGVPF---- 189 (396)
T ss_dssp EEC--CTTSCCCHHHHHHHHHHH--CCSEEEEESEETTTTEECC---CTTHHHHHHHTTCEEEEECTTT-BTTBCC----
T ss_pred ecC--CCCCCCCHHHHHHHHHhC--CCCEEEEECCCCCCceecC---HHHHHHHHHHcCCEEEEEcccc-ccCCcc----
Confidence 987 345779999999999731 5788999999999999998 5689999999999999999986 221111
Q ss_pred HHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHH-----------------h------hcc
Q 013839 250 QAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQI-----------------A------RAM 306 (435)
Q Consensus 250 ~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~-----------------~------~~~ 306 (435)
++ ...+..+++.|++|.++ .+.++||+++ +++ +++.+... . ...
T Consensus 190 -~~----~~~~~d~~~~s~~K~~~-~~~g~g~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (396)
T 2ch1_A 190 -YM----DKWEIDAVYTGAQKVLG-APPGITPISI---SPK----ALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRY 256 (396)
T ss_dssp -CT----TTTTCCEEECCCC-CCC-CCSSCEEEEE---CHH----HHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCC
T ss_pred -ch----hhcCcCEEEEcCCcccc-CCCCeEEEEE---CHH----HHHhhhhccCcccceEechHHHHHhhhhhcccCCC
Confidence 11 11123566789999765 3345688864 777 66555431 0 112
Q ss_pred ccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcc----eeEec----CCC
Q 013839 307 YGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLG----MFCFS----GLT 378 (435)
Q Consensus 307 ~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g----~~~~~----~~~ 378 (435)
..+++...+.++..++... ..+++++.+++++++++.+.+.|+++| +.+..++++ .++++ +.+
T Consensus 257 ~~~~~~~~~~a~~~al~~~-----~~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (396)
T 2ch1_A 257 HHTVASNLIFALREALAQI-----AEEGLENQIKRRIECAQILYEGLGKMG----LDIFVKDPRHRLPTVTGIMIPKGVD 327 (396)
T ss_dssp CCCCCHHHHHHHHHHHHHH-----HHHCHHHHHHHHHHHHHHHHHHHHHHT----CCBSSCSGGGBCTTEEEEECCTTCC
T ss_pred CCCCcHHHHHHHHHHHHHH-----HHhhHHHHHHHHHHHHHHHHHHHHHCC----CeeccCCccccCCceEEEEcCCCCC
Confidence 2456777777777777532 124567888899999999999999886 345555442 24544 335
Q ss_pred HHHH-HHHhhhccEEEeCC------C--cEEe-c-cCCCCcHHHHHHHHHHHHHhhhh
Q 013839 379 PYQV-DRLAKEFHIYMTQD------G--RISM-A-GVTTGNVNYLANAIHEVTRSEQE 425 (435)
Q Consensus 379 ~~~~-~~ll~~~gI~i~pg------g--Ris~-~-~~~~e~i~~~~~~l~~~l~~~~~ 425 (435)
.+.+ +.|++++||.+.+| + ||++ + ..+++++++++++|++++++...
T Consensus 328 ~~~~~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~~~~~ 385 (396)
T 2ch1_A 328 WWKVSQYAMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKESLKATHP 385 (396)
T ss_dssp HHHHHHHHHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhCCEEEecCccccCCCEEEEECCCCcCCHHHHHHHHHHHHHHHHHhCc
Confidence 5544 56655569999985 2 9998 3 33778899999999999987653
No 106
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=99.96 E-value=2.9e-28 Score=237.34 Aligned_cols=322 Identities=12% Similarity=0.085 Sum_probs=222.0
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCC--CcccHHHHHHHHHhHcCCCCccccCC-CeeeEecC
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESIS--ASVSTKMVEESVKLVYGKDSDVVKEG-RSAGVQAL 124 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~--~~g~~~lr~~ia~~l~~~~~~~~~~~-~v~~~~t~ 124 (435)
..+..+++..|.. + +++.+.+++...... .|.+ ..+..++++.+++++ +.. ++ ++. +++
T Consensus 16 ~~~~~~~~~~g~~------~-~~~~v~~a~~~~~~~---~~~~~~~~~~~~l~~~la~~~-g~~-----~~~~i~--~~~ 77 (393)
T 2huf_A 16 VTPNKLLMGPGPS------N-APQRVLDAMSRPILG---HLHPETLKIMDDIKEGVRYLF-QTN-----NIATFC--LSA 77 (393)
T ss_dssp CCCCCEECSSSCC------C-CCHHHHHHTTSCCCC---TTSHHHHHHHHHHHHHHHHHH-TCC-----CSEEEE--ESS
T ss_pred CCCCeEEecCCCC------C-CCHHHHHHHHhhhcc---CCCHHHHHHHHHHHHHHHHHh-CCC-----CCcEEE--EcC
Confidence 4456677766642 2 333333333332222 2322 356789999999998 332 22 676 899
Q ss_pred CchhHHHHHHHHHHHhCCCCEEEEcCCCChhh--HHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCC-CcEEEEe
Q 013839 125 SGTGACRLFAEFQRRFHPESHIYFPDPTWSNH--HNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPD-SSFFLLH 201 (435)
Q Consensus 125 gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~--~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~-~~~~v~~ 201 (435)
||++|+.++ +..++.+||+|++++|+|..+ ...++..|++++.+++ + +++.+|+++++++++ + +++++++
T Consensus 78 g~t~a~~~~--~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~-~-~~~~~d~~~l~~~i~---~~~~~~v~~ 150 (393)
T 2huf_A 78 SGHGGMEAT--LCNLLEDGDVILIGHTGHWGDRSADMATRYGADVRVVKS-K-VGQSLSLDEIRDALL---IHKPSVLFL 150 (393)
T ss_dssp CHHHHHHHH--HHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEEC-C-TTCCCCHHHHHHHHH---HHCCSEEEE
T ss_pred cHHHHHHHH--HHHHhCCCCEEEEECCCcchHHHHHHHHHcCCeeEEEeC-C-CCCCCCHHHHHHHHh---ccCCcEEEE
Confidence 999999998 666688999999999999874 2345668999999987 2 346799999999997 4 6788999
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEeccccc-ccccCCccc
Q 013839 202 PSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKS-MGLYGHRVG 280 (435)
Q Consensus 202 ~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~-~g~~G~RvG 280 (435)
++|+||||..++ +++|.++|++||+++|+|+++. +..... .+ ...+.++++.|+||. +|++|+ |
T Consensus 151 ~~~~nptG~~~~---l~~i~~~~~~~~~~li~D~a~~-~~~~~~-----~~----~~~~~d~~~~s~sK~l~g~~G~--G 215 (393)
T 2huf_A 151 TQGDSSTGVLQG---LEGVGALCHQHNCLLIVDTVAS-LGGAPM-----FM----DRWEIDAMYTGSQKVLGAPPGI--T 215 (393)
T ss_dssp ESEETTTTEECC---CTTHHHHHHHTTCEEEEECTTT-BTTBCC-----CT----TTTTCSEEECCSSSTTCCCSSC--E
T ss_pred EccCCCccccCC---HHHHHHHHHHcCCEEEEEcccc-cCCCCc-----ch----hhcCccEEEECCCcccccCCCe--E
Confidence 999999999988 5699999999999999999964 221111 11 112467889999997 567776 9
Q ss_pred EEEEEecChhHHHHHHHHHHHHh----h-------------------ccccCCChhHHHHHHHHhCChhhHHHHHHHHHH
Q 013839 281 CLSILCVDSKQAAAIRSQIQQIA----R-------------------AMYGSPPVHGILLVATILSDPNLKSLWIDEVKI 337 (435)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~l~~~~----~-------------------~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~ 337 (435)
|+++ +++ +++.+.... . ....+++...+.++..++.... ...+++
T Consensus 216 ~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~-----~~~~~~ 283 (393)
T 2huf_A 216 PVSF---SHR----AVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMAC-----EEGLPA 283 (393)
T ss_dssp EEEE---CHH----HHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHH-----HHCHHH
T ss_pred EEEE---CHH----HHHHHhhcCCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHH-----HhCHHH
Confidence 9964 777 777666531 0 0112455555555555664221 123677
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCcccccc---CcceeEec----CCCHHHH-HHHhhhccEEEeCC------C--cEEe
Q 013839 338 MADRIQRKRTTLRQNLEKLGSSLNWEHITN---QLGMFCFS----GLTPYQV-DRLAKEFHIYMTQD------G--RISM 401 (435)
Q Consensus 338 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~---~~g~~~~~----~~~~~~~-~~ll~~~gI~i~pg------g--Ris~ 401 (435)
.+++++++++++.+.|++++. .+..+ ..++++++ +.+.+.+ ..|++++||.+.+| + ||++
T Consensus 284 ~~~~~~~~~~~l~~~L~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~gi~v~~g~~~~~~~~~Ri~~ 359 (393)
T 2huf_A 284 LIARHEDCAKRLYRGLQDAGF----ELYADPKDRLSTVTTIKVPQGVDWLKAAQYAMKTYLVEISGGLGPTAGQVFRIGL 359 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC----CBSSCGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECBCCCGGGTTTEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHcCC----eeccCccccCCcEEEEEcCCCCCHHHHHHHHHHhCCEEEecCcccccCCEEEEEc
Confidence 888899999999999988753 34443 23445544 3345444 55655569999986 2 9998
Q ss_pred -cc-CCCCcHHHHHHHHHHHHHhhhh
Q 013839 402 -AG-VTTGNVNYLANAIHEVTRSEQE 425 (435)
Q Consensus 402 -~~-~~~e~i~~~~~~l~~~l~~~~~ 425 (435)
+. .+++++++++++|++++++++.
T Consensus 360 ~~~~~~~e~i~~~~~~l~~~~~~~~~ 385 (393)
T 2huf_A 360 MGQNATTERVDRVLQVFQEAVAAVKP 385 (393)
T ss_dssp CGGGCSHHHHHHHHHHHHHHHHHHCC
T ss_pred ccCcCCHHHHHHHHHHHHHHHHHcCC
Confidence 53 2577899999999999987653
No 107
>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.96 E-value=3e-28 Score=233.54 Aligned_cols=305 Identities=16% Similarity=0.086 Sum_probs=210.6
Q ss_pred ccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEE
Q 013839 68 VVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIY 147 (435)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vl 147 (435)
.+++.+.+++...... ...|....+..++++.+++++ +.. +++++ +++||++|+.++ +.+++.+||+|+
T Consensus 11 ~~~~~v~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~~-g~~-----~~~i~--~~~g~t~a~~~~--~~~~~~~gd~vl 79 (352)
T 1iug_A 11 RLHPKALEALARPQLH-HRTEAAREVFLKARGLLREAF-RTE-----GEVLI--LTGSGTLAMEAL--VKNLFAPGERVL 79 (352)
T ss_dssp CCCHHHHHHHHSCCCC-TTSHHHHHHHHHHHHHHHHHH-TCS-----SEEEE--EESCHHHHHHHH--HHHHCCTTCEEE
T ss_pred CCCHHHHHHhccCCCC-ccCHHHHHHHHHHHHHHHHHh-CCC-----CceEE--EcCchHHHHHHH--HHhccCCCCeEE
Confidence 3344444444443322 122222346789999999998 332 35677 899999999998 666788999999
Q ss_pred EcCCCChhhH--HHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHH
Q 013839 148 FPDPTWSNHH--NIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFK 225 (435)
Q Consensus 148 v~~p~y~~~~--~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~ 225 (435)
+++|+|+.+. ..++..|++++.++. ++++.+|++++++ ++++++++++|+||||.+++ +++|.++|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~g~~~~~v~~--~~~~~~d~~~l~~------~~~~~v~~~~~~nptG~~~~---l~~i~~l~~ 148 (352)
T 1iug_A 80 VPVYGKFSERFYEIALEAGLVVERLDY--PYGDTPRPEDVAK------EGYAGLLLVHSETSTGALAD---LPALARAFK 148 (352)
T ss_dssp EEECSHHHHHHHHHHHHTTCEEEEEEC--CTTCCCCTTTSCC------SSCSEEEEESEETTTTEECC---HHHHHHHHH
T ss_pred EEeCCchhHHHHHHHHHcCCceEEEeC--CCCCCCCHHHHhc------cCCcEEEEEEecCCcceecC---HHHHHHHHH
Confidence 9999998865 445668999999987 3345788888765 35678999999999999987 569999999
Q ss_pred hc--CceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEeccccc-ccccCCcccEEEEEecChhHHHHHHHH----
Q 013839 226 VK--GHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKS-MGLYGHRVGCLSILCVDSKQAAAIRSQ---- 298 (435)
Q Consensus 226 ~~--~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~-~g~~G~RvG~~~~~~~~~~~~~~~~~~---- 298 (435)
+| |+++|+|++|.... ... .+ ...+.++++.|+||. ++.+| +||+++ +++ +++.
T Consensus 149 ~~~~~~~li~D~a~~~~~-~~~-----~~----~~~~~d~~~~s~~K~~~~~~g--~G~~~~---~~~----~~~~~~~~ 209 (352)
T 1iug_A 149 EKNPEGLVGADMVTSLLV-GEV-----AL----EAMGVDAAASGSQKGLMCPPG--LGFVAL---SPR----ALERLKPR 209 (352)
T ss_dssp HHCTTCEEEEECTTTBTT-BCC-----CS----GGGTCSEEEEESSSTTCCCSC--EEEEEE---CHH----HHHTCCCC
T ss_pred hhCCCCEEEEECCccccC-cce-----ec----cccCeeEEEecCcccccCCCc--eeEEEE---CHH----HHHHhhCC
Confidence 99 99999999975221 111 11 111356789999995 45444 799964 776 4332
Q ss_pred -----HH----HH-hhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccC
Q 013839 299 -----IQ----QI-ARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQ 368 (435)
Q Consensus 299 -----l~----~~-~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 368 (435)
+. .. ......+++...+.++..++.... +++++.+++++++++++.+.|++++ +.+..+.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~------~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~ 279 (352)
T 1iug_A 210 GYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVL------PRLEEHLALKAWQNALLYGVGEEGG----LRPVPKR 279 (352)
T ss_dssp SSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHG------GGHHHHHHHHHHHHHHHHHHHHHTT----CEESCSS
T ss_pred CceeeHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHCC----Ccccccc
Confidence 11 11 122234566676766666664321 2367788889999999999998875 4455553
Q ss_pred -cceeEecC----CCHHHHHHHhhhccEEEeCC------C--cEEeccC-CCCcHHHHHHHHHHHHHhh
Q 013839 369 -LGMFCFSG----LTPYQVDRLAKEFHIYMTQD------G--RISMAGV-TTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 369 -~g~~~~~~----~~~~~~~~ll~~~gI~i~pg------g--Ris~~~~-~~e~i~~~~~~l~~~l~~~ 423 (435)
.+.++|+. .+.+.+.+.|.++||.+.++ + ||+++.. +++++++++++|+++++++
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 348 (352)
T 1iug_A 280 FSPAVAAFYLPEGVPYARVKEAFAQRGAVIAGGQGPLKGKVFRLSLMGAYDRYEALGVAGMFREVLEEI 348 (352)
T ss_dssp BCTTCEEEECCTTCCHHHHHHHHHTTTEECEECCGGGTTTEEEECCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHCCEEEEeCCCccCCCEEEEEccccCCHHHHHHHHHHHHHHHHHh
Confidence 55566653 34555544445679999976 2 9998643 6799999999999988754
No 108
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*
Probab=99.96 E-value=1e-28 Score=241.05 Aligned_cols=324 Identities=12% Similarity=0.093 Sum_probs=215.4
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCC--CCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCC
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGS--EFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALS 125 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~g 125 (435)
++...+||+.|...+.-++ .++++.+.+.+.+... ....| +.....++++.+++++ + .+++. +++|
T Consensus 38 ~g~~~ld~~~~~~~~~lg~-~~~~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~-g-------~~~v~--~~~g 105 (397)
T 2ord_A 38 KGNAYLDFTSGIAVNVLGH-SHPRLVEAIKDQAEKLIHCSNLF-WNRPQMELAELLSKNT-F-------GGKVF--FANT 105 (397)
T ss_dssp TCCEEEESSHHHHTCTTCB-TCHHHHHHHHHHHHHCSCCCTTS-EEHHHHHHHHHHHHTT-T-------SCEEE--EESS
T ss_pred CCCEEEECCccccccccCC-CCHHHHHHHHHHHHhcccCcccc-CCHHHHHHHHHHHHhc-C-------CCeEE--EeCC
Confidence 4567899998843122222 2333433333333211 01123 2234567777777776 3 24677 8999
Q ss_pred chhHHHHHHHHHHHhC------C-CCEEEEcCCCChhh-HHHHhhCCCC------------eeeeeecCCCCCCcChHhH
Q 013839 126 GTGACRLFAEFQRRFH------P-ESHIYFPDPTWSNH-HNIWRDAQIP------------ERTYHYYDPDSKSLDFAAL 185 (435)
Q Consensus 126 g~~a~~~~~~~~~~~~------~-gd~Vlv~~p~y~~~-~~~~~~~g~~------------~~~v~~~~~~~~~~d~e~l 185 (435)
|++|+.++. ..+.. + +++|++++|+|.+. ...+...|.+ ++.++. .|+++|
T Consensus 106 g~~a~~~al--~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~-------~d~~~l 176 (397)
T 2ord_A 106 GTEANEAAI--KIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEF-------NNVEDL 176 (397)
T ss_dssp HHHHHHHHH--HHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCSCCTTEEEECT-------TCHHHH
T ss_pred HHHHHHHHH--HHHHHHhhcCCCCCceEEEEcCCcCCCchhhhhccCChhhccccCCCCCCeeEecC-------CCHHHH
Confidence 999998884 33332 5 47899999999654 4466677765 333432 289999
Q ss_pred HHHhhcCCCCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEE
Q 013839 186 MDDIKNAPDSSFFLLHPSAHNPTGV-DPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGC 264 (435)
Q Consensus 186 ~~~i~~~~~~~~~v~~~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~ 264 (435)
+++++ ++++++++++|+||||. +++.+++++|.++|++||+++|+||+|.++.+.+. ..++..+ +...+++
T Consensus 177 ~~~l~---~~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~---~~~~~~~-~~~~d~~- 248 (397)
T 2ord_A 177 RRKMS---EDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGK---LFAYQKY-GVVPDVL- 248 (397)
T ss_dssp HHHCC---TTEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSHHHHH-TCCCSEE-
T ss_pred HHHhh---cCeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCcc---chhhhhh-CCCCCee-
Confidence 99987 57899999999999999 99999999999999999999999999987766431 1222222 2112222
Q ss_pred EecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHH
Q 013839 265 AQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQR 344 (435)
Q Consensus 265 ~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~ 344 (435)
|+||.++ +|+|+||+++ +++ ++ .+.........+.+.+.+.++.++|+... + ++.++++++
T Consensus 249 --s~sK~~~-~G~r~G~~~~---~~~----~~-~l~~~~~~~~~~~~~~~~~a~~~~l~~~~------~--~~~~~~~~~ 309 (397)
T 2ord_A 249 --TTAKGLG-GGVPIGAVIV---NER----AN-VLEPGDHGTTFGGNPLACRAGVTVIKELT------K--EGFLEEVEE 309 (397)
T ss_dssp --EECGGGG-TTSCCEEEEE---CST----TC-CCCTTSSCCSSTTCHHHHHHHHHHHHHHT------S--TTHHHHHHH
T ss_pred --eeccccC-CCcCeEEEEE---chH----hc-ccCCCCcCCCCCCCHHHHHHHHHHHHHHH------h--CCHHHHHHH
Confidence 7899999 8999999974 666 54 44432233455678888888887775321 1 356677888
Q ss_pred HHHHHHHHHHhh--CCCCCccccccCcceeEecCC----CHHHH-HHHhhhccEEEeCCC----cEEec-cCCCCcHHHH
Q 013839 345 KRTTLRQNLEKL--GSSLNWEHITNQLGMFCFSGL----TPYQV-DRLAKEFHIYMTQDG----RISMA-GVTTGNVNYL 412 (435)
Q Consensus 345 ~~~~l~~~l~~~--~~~~~~~~~~~~~g~~~~~~~----~~~~~-~~ll~~~gI~i~pgg----Ris~~-~~~~e~i~~~ 412 (435)
+++.+.+.|+++ +.+ .+....+. |.|+|+.+ +.+.+ +.+ .++||.+.|++ ||+++ ..++++++++
T Consensus 310 ~~~~l~~~L~~~~~~~~-~~~~~~~~-g~~~~~~~~~~~~~~~l~~~l-~~~gi~v~~~~~~~iRis~~~~~~~e~i~~~ 386 (397)
T 2ord_A 310 KGNYLMKKLQEMKEEYD-VVADVRGM-GLMIGIQFREEVSNREVATKC-FENKLLVVPAGNNTIRFLPPLTVEYGEIDLA 386 (397)
T ss_dssp HHHHHHHHHHHHHHHCT-TEEEEEEE-TTEEEEEECTTSCHHHHHHHH-HHTTEECEEETTTEEEECCCTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCC-ceEEEEEE-eEEEEEEECChHHHHHHHHHH-HHCCCEEccCCCCEEEEECCcCCCHHHHHHH
Confidence 888888888776 232 11112333 44555543 34444 555 55899999874 88854 3488999999
Q ss_pred HHHHHHHHHh
Q 013839 413 ANAIHEVTRS 422 (435)
Q Consensus 413 ~~~l~~~l~~ 422 (435)
+++|++++++
T Consensus 387 ~~~l~~~l~~ 396 (397)
T 2ord_A 387 VETLKKVLQG 396 (397)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhh
Confidence 9999988753
No 109
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=99.96 E-value=3.8e-28 Score=238.95 Aligned_cols=285 Identities=14% Similarity=0.131 Sum_probs=205.3
Q ss_pred ccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHh----CCCCEEEEcCCCChhhHHHH---hhCCC
Q 013839 93 VSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRF----HPESHIYFPDPTWSNHHNIW---RDAQI 165 (435)
Q Consensus 93 g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~----~~gd~Vlv~~p~y~~~~~~~---~~~g~ 165 (435)
+..++++.+++++ +.. ++++. +++||++|+.++ +.++. .+||+|+++.|+|+.+...+ ...|+
T Consensus 69 ~~~~l~~~la~~~-~~~-----~~~v~--~~~ggt~a~~~a--~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~ 138 (423)
T 3lvm_A 69 AVDIARNQIADLV-GAD-----PREIV--FTSGATESDNLA--IKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGF 138 (423)
T ss_dssp HHHHHHHHHHHHH-TCC-----GGGEE--EESSHHHHHHHH--HHHHHHHHTTTCCEEEEETTSCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHc-CCC-----CCeEE--EeCChHHHHHHH--HHHHHHhhccCCCEEEECCccchHHHHHHHHHHHcCC
Confidence 4478888888887 332 45787 899999999988 44444 37999999999999987766 45599
Q ss_pred CeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCC
Q 013839 166 PERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDL 245 (435)
Q Consensus 166 ~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~ 245 (435)
+++.++. .+++.+|+++|++++. ++++++++++|+||||.+++ +++|.++|++||+++|+|++|...... .
T Consensus 139 ~~~~v~~--~~~~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~~~~~-~ 209 (423)
T 3lvm_A 139 EVTYLAP--QRNGIIDLKELEAAMR---DDTILVSIMHVNNEIGVVQD---IAAIGEMCRARGIIYHVDATQSVGKLP-I 209 (423)
T ss_dssp EEEEECC--CTTSCCCHHHHHHHCC---TTEEEEECCSBCTTTCBBCC---HHHHHHHHHHHTCEEEEECTTTTTTSC-C
T ss_pred EEEEecc--CCCCccCHHHHHHhcC---CCcEEEEEeCCCCCCccccC---HHHHHHHHHHcCCEEEEEhhhhcCCCC-c
Confidence 9999987 3367889999999997 67899999999999999998 568999999999999999997543221 0
Q ss_pred cccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhh-------ccccCCChhHHHHH
Q 013839 246 DKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIAR-------AMYGSPPVHGILLV 318 (435)
Q Consensus 246 ~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~~q~~~ 318 (435)
. ....+.++++.|+||.+|.+| +||+++ +++ +...+..... ....+++...+.++
T Consensus 210 -----~----~~~~~~di~~~s~sK~~g~~g--~G~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 271 (423)
T 3lvm_A 210 -----D----LSQLKVDLMSFSGHKIYGPKG--IGALYV---RRK----PRVRIEAQMHGGGHERGMRSGTLPVHQIVGM 271 (423)
T ss_dssp -----C----TTTSCCSEEEEESTTTTSCSS--CEEEEE---CBT----TBCCCCCSSCSSCTTTTTCCSCCCHHHHHHH
T ss_pred -----C----hhhcCCCEEEechHHhcCCCC--eEEEEE---ecc----ccCCCCccccCCcccccccCCCCCHHHHHHH
Confidence 0 112245788999999988666 899974 555 4333333211 12334556666666
Q ss_pred HHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCc----ceeE-e-cCCCHHHHHHHhhhccEE
Q 013839 319 ATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQL----GMFC-F-SGLTPYQVDRLAKEFHIY 392 (435)
Q Consensus 319 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~----g~~~-~-~~~~~~~~~~ll~~~gI~ 392 (435)
..++... .+.+++.+++++++++.+.+.|++++. +.+..+.+ +++. + .+.+.+.+...|.+ |.
T Consensus 272 ~~al~~~------~~~~~~~~~~~~~~~~~l~~~L~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--i~ 340 (423)
T 3lvm_A 272 GEAYRIA------KEEMATEMERLRGLRNRLWNGIKDIEE---VYLNGDLEHGAPNILNVSFNYVEGESLIMALKD--LA 340 (423)
T ss_dssp HHHHHHH------HHHHHHHHHHHHHHHHHHHHHHTTSTT---EEEESCSTTBCTTEEEEEETTSCHHHHHHHTTT--EE
T ss_pred HHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhcCCC---EEEeCCccccCCCeEEEEeCCCCHHHHHHHHhh--he
Confidence 5555432 244788889999999999999987732 44444432 2222 2 24566666656655 88
Q ss_pred EeCC-------------------------C--cEEecc-CCCCcHHHHHHHHHHHHHhhhh
Q 013839 393 MTQD-------------------------G--RISMAG-VTTGNVNYLANAIHEVTRSEQE 425 (435)
Q Consensus 393 i~pg-------------------------g--Ris~~~-~~~e~i~~~~~~l~~~l~~~~~ 425 (435)
+.+| + ||+++. .+++++++++++|+++++++.+
T Consensus 341 v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~~~~~~~ 401 (423)
T 3lvm_A 341 VSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRLRD 401 (423)
T ss_dssp CBCCCC-----CCCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred eccCccccCCCccccHHHHHhCCCccccCceEEEECCCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 8764 3 899863 3678999999999999987654
No 110
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=99.96 E-value=2.5e-28 Score=237.73 Aligned_cols=288 Identities=11% Similarity=0.036 Sum_probs=198.0
Q ss_pred HHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCC-------------CCEEEEcCCCChhhHHHHhh
Q 013839 96 KMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHP-------------ESHIYFPDPTWSNHHNIWRD 162 (435)
Q Consensus 96 ~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~-------------gd~Vlv~~p~y~~~~~~~~~ 162 (435)
++++.+++++ +.. +++++ +++||++|+.++ +..+..+ ||+|+++.|+|..+...++.
T Consensus 73 ~l~~~la~~~-~~~-----~~~i~--~~~ggt~a~~~~--~~~~~~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~ 142 (397)
T 3f9t_A 73 KAVALLGSLL-NNK-----DAYGH--IVSGGTEANLMA--LRCIKNIWREKRRKGLSKNEHPKIIVPITAHFSFEKGREM 142 (397)
T ss_dssp HHHHHHHHHT-TCT-----TCEEE--EESCHHHHHHHH--HHHHHHHHHHHHHTTCCCCSSCEEEEETTCCTHHHHHHHH
T ss_pred HHHHHHHHHh-CCC-----CCCEE--EecCcHHHHHHH--HHHHHHHHHhhhhhcccCCCCeEEEECCcchhHHHHHHHH
Confidence 3445555554 322 55777 899999999888 4444444 99999999999999999999
Q ss_pred CCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccC
Q 013839 163 AQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFAS 242 (435)
Q Consensus 163 ~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~ 242 (435)
.|++++.++. ++++.+|+++|++++.+. +++++++++|+||||.+.+ +++|.++|++||+++|+|++|..+..
T Consensus 143 ~g~~~~~v~~--~~~~~~d~~~l~~~i~~~--~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~~~~ 215 (397)
T 3f9t_A 143 MDLEYIYAPI--KEDYTIDEKFVKDAVEDY--DVDGIIGIAGTTELGTIDN---IEELSKIAKENNIYIHVDAAFGGLVI 215 (397)
T ss_dssp HTCEEEEECB--CTTSSBCHHHHHHHHHHS--CCCEEEEEBSCTTTCCBCC---HHHHHHHHHHHTCEEEEECTTGGGTG
T ss_pred cCceeEEEee--CCCCcCCHHHHHHHHhhc--CCeEEEEECCCCCCCCCCC---HHHHHHHHHHhCCeEEEEccccchhh
Confidence 9999999998 345789999999999831 6788999999999999876 66899999999999999999976543
Q ss_pred CCCcccHHHH-----HHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhcccc---------
Q 013839 243 GDLDKDAQAI-----RIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYG--------- 308 (435)
Q Consensus 243 ~~~~~~~~~~-----~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------- 308 (435)
+.... .... ...... +.++++.|++|.++ +|.|+||++ +.++. +.+.+.........
T Consensus 216 ~~~~~-~~~~~~~~~~~~~~~-~~~~~~~s~~K~~~-~~~~~g~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 286 (397)
T 3f9t_A 216 PFLDD-KYKKKGVNYKFDFSL-GVDSITIDPHKMGH-CPIPSGGIL--FKDIG----YKRYLDVDAPYLTETRQATILGT 286 (397)
T ss_dssp GGCCG-GGCCTTCCCCCSGGG-TCSEEECCTTTTTC-CCSSCEEEE--ESSGG----GGGGTCEECTTSSSSEECSSCSS
T ss_pred hhccc-ccccccccccccccc-cCCeEEEccccccC-CCCCceEEE--EeCHH----HHHhhccCCccccCCCccccccc
Confidence 21100 0000 000112 45688899999876 778999996 33555 44333221111111
Q ss_pred --CCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCC-CHHHHHHH
Q 013839 309 --SPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL-TPYQVDRL 385 (435)
Q Consensus 309 --~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~l 385 (435)
+.+.+.+.++...+.. ...++..++++++++++.+.|++++. ....+..+.++|+.. +.+.+.+.
T Consensus 287 ~~~~~~~~~~a~~~~~~~--------~~~~~~~~~~~~~~~~l~~~L~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~ 354 (397)
T 3f9t_A 287 RVGFGGACTYAVLRYLGR--------EGQRKIVNECMENTLYLYKKLKENNF----KPVIEPILNIVAIEDEDYKEVCKK 354 (397)
T ss_dssp CCSHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHTTC----CBSSCCSSSEEEEECTTHHHHHHH
T ss_pred cccchHHHHHHHHHHHhH--------HHHHHHHHHHHHHHHHHHHHHHHCCC----EEEcCCCccEEEEEeCCHHHHHHH
Confidence 1233444444444421 44567778888999999999998863 333333344555544 44445444
Q ss_pred hhhccEEEeCCC-----cEEecc-CCCCcHHHHHHHHHHHHH
Q 013839 386 AKEFHIYMTQDG-----RISMAG-VTTGNVNYLANAIHEVTR 421 (435)
Q Consensus 386 l~~~gI~i~pgg-----Ris~~~-~~~e~i~~~~~~l~~~l~ 421 (435)
+.++||.+.+++ ||+++. .+++++++++++|+++++
T Consensus 355 l~~~gi~v~~~~~~~~~Ri~~~~~~~~e~i~~~~~~l~~~l~ 396 (397)
T 3f9t_A 355 LRDRGIYVSVCNCVKALRIVVMPHIKREHIDNFIEILNSIKR 396 (397)
T ss_dssp HHHTTCBCEECSSSSEEEEECCTTCCHHHHHHHHHHHHHHC-
T ss_pred HHhCCeEEeccCCCCEEEEEEcCCCCHHHHHHHHHHHHHhhC
Confidence 456799999874 999863 378999999999988764
No 111
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3
Probab=99.96 E-value=4.5e-28 Score=233.32 Aligned_cols=289 Identities=14% Similarity=0.071 Sum_probs=206.6
Q ss_pred cccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcC-CCChh-hHHHHhhCCCCeee
Q 013839 92 SVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPD-PTWSN-HHNIWRDAQIPERT 169 (435)
Q Consensus 92 ~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~-p~y~~-~~~~~~~~g~~~~~ 169 (435)
.+..++++++++++. .. ..+++++ +++||++|+.++ +..++.+||+|++++ |+|+. +...+...|++++.
T Consensus 37 ~~~~~l~~~la~~~g-~~---~~~~~v~--~~~g~t~a~~~~--~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~ 108 (366)
T 1m32_A 37 GVVEQIRQQLTALAT-AS---EGYTSVL--LQGSGSYAVEAV--LGSALGPQDKVLIVSNGAYGARMVEMAGLMGIAHHA 108 (366)
T ss_dssp TTHHHHHHHHHHHHC-SS---SSEEEEE--EESCHHHHHHHH--HHHSCCTTCCEEEEESSHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHHHHHhC-CC---CcCcEEE--EecChHHHHHHH--HHHhcCCCCeEEEEeCCCccHHHHHHHHHhCCceEE
Confidence 678899999999984 21 1124677 899999999998 666678999988776 55553 56677888999999
Q ss_pred eeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccH
Q 013839 170 YHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDA 249 (435)
Q Consensus 170 v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~ 249 (435)
++. .+++.+|+++|++++++. .+++++++++|+||||.+++ +++|.++|++||+++|+|++|...... .
T Consensus 109 v~~--~~~~~~d~~~l~~~l~~~-~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~~~~~-~---- 177 (366)
T 1m32_A 109 YDC--GEVARPDVQAIDAILNAD-PTISHIAMVHSETTTGMLNP---IDEVGALAHRYGKTYIVDAMSSFGGIP-M---- 177 (366)
T ss_dssp EEC--CTTSCCCHHHHHHHHHHC-TTCCEEEEESEETTTTEECC---HHHHHHHHHHHTCEEEEECTTTTTTSC-C----
T ss_pred EeC--CCCCCCCHHHHHHHHhcC-CCeEEEEEecccCCcceecC---HHHHHHHHHHcCCEEEEECCccccCcC-c----
Confidence 987 335679999999999853 24688889999999999998 569999999999999999998643321 1
Q ss_pred HHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHh------------------hccccCCC
Q 013839 250 QAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIA------------------RAMYGSPP 311 (435)
Q Consensus 250 ~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~------------------~~~~~~~~ 311 (435)
++ ...+.++++.|+||.++ .+.++||+++ +++ +++.+.... .....+++
T Consensus 178 -~~----~~~~~di~~~s~~K~~~-~~~g~G~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (366)
T 1m32_A 178 -DI----AALHIDYLISSANKCIQ-GVPGFAFVIA---REQ----KLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSP 244 (366)
T ss_dssp -CT----TTTTCSEEEEESSSTTC-CCSSEEEEEE---EHH----HHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCC
T ss_pred -cc----cccCccEEEecCccccc-CCCceEEEEE---CHH----HHHhhcCCCCCccccHHHHHhhhcccCCCCCCCCC
Confidence 11 11235789999999774 2345699974 666 554443210 00123566
Q ss_pred hhHHHHHHHHhCChhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhCCCCCcccccc---CcceeEecCC------CHH
Q 013839 312 VHGILLVATILSDPNLKSLWIDE--VKIMADRIQRKRTTLRQNLEKLGSSLNWEHITN---QLGMFCFSGL------TPY 380 (435)
Q Consensus 312 ~~~q~~~~~~l~~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~---~~g~~~~~~~------~~~ 380 (435)
...+.++..++... .+. +++.+++++++++++.+.|++++. .+..+ .+++++|+.+ +.+
T Consensus 245 ~~~~~a~~~al~~~------~~~g~~~~~~~~~~~~~~~l~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (366)
T 1m32_A 245 THTVLAFAQALKEL------AKEGGVAARHQRYQQNQRSLVAGMRALGF----NTLLDDELHSPIITAFYSPEDPQYRFS 314 (366)
T ss_dssp HHHHHHHHHHHHHH------HHHTHHHHHHHHHHHHHHHHHHHHHHTTC----CBSSCGGGBCSSEEEEECCCCTTCCHH
T ss_pred HHHHHHHHHHHHHH------HHccCHhHHHHHHHHHHHHHHHHHHHCCC----eeccCchhcCceEEEEEcCccCCCCHH
Confidence 67666666666432 133 567888999999999999988753 33333 4566666633 445
Q ss_pred HHHHHhhhccEEEeCCC-------cEEeccC-CCCcHHHHHHHHHHHHHh
Q 013839 381 QVDRLAKEFHIYMTQDG-------RISMAGV-TTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 381 ~~~~ll~~~gI~i~pgg-------Ris~~~~-~~e~i~~~~~~l~~~l~~ 422 (435)
.+.+.|.++||.+.++. |++++.. +++++++++++|++++++
T Consensus 315 ~~~~~l~~~gi~v~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 364 (366)
T 1m32_A 315 EFYRRLKEQGFVIYPGKVSQSDCFRIGNIGEVYAADITALLTAIRTAMYW 364 (366)
T ss_dssp HHHHHHHHTTEECEECCCSSSCEEEEECCSSCCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHCCEEEECCcCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 55444456799999862 9998653 678999999999987654
No 112
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=99.96 E-value=8.6e-28 Score=233.75 Aligned_cols=290 Identities=11% Similarity=0.073 Sum_probs=207.7
Q ss_pred cccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChh--hHHHHhhCCCCeee
Q 013839 92 SVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSN--HHNIWRDAQIPERT 169 (435)
Q Consensus 92 ~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~--~~~~~~~~g~~~~~ 169 (435)
....++++.+++++.... ++++. +++||++|+.++ +..++.+||+|+++.++|.+ +...++..|++++.
T Consensus 56 ~~~~~l~~~la~~~~~~~-----~~~v~--~~~gg~~al~~~--~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~ 126 (393)
T 3kgw_A 56 QIMEEIKQGIQYVFQTRN-----PLTLV--VSGSGHCAMETA--LFNLLEPGDSFLTGTNGIWGMRAAEIADRIGARVHQ 126 (393)
T ss_dssp HHHHHHHHHHHHHHTCCC-----SEEEE--ESCCTTTHHHHH--HHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHhCCCC-----CcEEE--EeCCcHHHHHHH--HHhcCCCCCEEEEEeCCchhHHHHHHHHHcCCceEE
Confidence 345678888888873221 23466 899999999888 66678999999999988753 35677888999999
Q ss_pred eeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccH
Q 013839 170 YHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDA 249 (435)
Q Consensus 170 v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~ 249 (435)
++. +.++.+|+++|++++++ .+++++++++||||||..++ +++|.++|++||+++|+|++|...... . +
T Consensus 127 ~~~--~~~~~~d~~~l~~~i~~--~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~g~~~-~--~- 195 (393)
T 3kgw_A 127 MIK--KPGEHYTLQEVEEGLAQ--HKPVLLFLVHGESSTGVVQP---LDGFGELCHRYQCLLLVDSVASLGGVP-I--Y- 195 (393)
T ss_dssp EEC--CTTCCCCHHHHHHHHHH--HCCSEEEEESEETTTTEECC---CTTHHHHHHHTTCEEEEECTTTTTTSC-C--C-
T ss_pred EeC--CCCCCCCHHHHHHHHhh--CCCcEEEEeccCCcchhhcc---HHHHHHHHHHcCCEEEEECCccccCcc-c--c-
Confidence 987 33457999999999983 16789999999999999987 558999999999999999997532211 1 0
Q ss_pred HHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhh-----------------------cc
Q 013839 250 QAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIAR-----------------------AM 306 (435)
Q Consensus 250 ~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~ 306 (435)
.+..+.++++.|+||.++ .+.++||+++ +++ +++.+..... ..
T Consensus 196 ------~~~~~~d~~~~s~sK~~~-~~~g~g~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (393)
T 3kgw_A 196 ------MDQQGIDIMYSSSQKVLN-APPGISLISF---NDK----AKYKVYSRKTKPVSFYTDITYLAKLWGCEGETRVI 261 (393)
T ss_dssp ------TTTTTCCEEEEESSSTTC-CCSSCEEEEE---CHH----HHHHHHTCSSCCSCSTTCHHHHHHHTTCSSSCCCC
T ss_pred ------hhhcCCCEEEecCccccc-CCCceeEEEE---CHH----HHHHHhccCCCCCceeecHHHHHHhhhhccccCCC
Confidence 112245788899999774 2344899974 888 7776654221 11
Q ss_pred ccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccc----cCcceeEecC----CC
Q 013839 307 YGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHIT----NQLGMFCFSG----LT 378 (435)
Q Consensus 307 ~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~----~~~g~~~~~~----~~ 378 (435)
..+++...+.++..++.... ...+++.+++++++++.+.+.|++++. .+.. ...+++.|+. .+
T Consensus 262 ~~~~~~~~~~a~~~al~~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~ 332 (393)
T 3kgw_A 262 HHTTPVTSLYCLRESLALIA-----EQGLENCWRRHREATAHLHKHLQEMGL----KFFVKDPEIRLPTITTVTVPAGYN 332 (393)
T ss_dssp CCCCCHHHHHHHHHHHHHHH-----HHCHHHHHHHHHHHHHHHHHHHHHTTC----CBSSSSGGGBCSSEEEEECCTTBC
T ss_pred CCCCCHHHHHHHHHHHHHHH-----HhhHHHHHHHHHHHHHHHHHHHHHcCC----eeccCChhhcCCeEEEEeCCCCCC
Confidence 23456666666656654221 134678889999999999999998863 3332 2234455443 34
Q ss_pred HHHH-HHHhhhccEEEeCCC--------cEEe-ccC-CCCcHHHHHHHHHHHHHhhh
Q 013839 379 PYQV-DRLAKEFHIYMTQDG--------RISM-AGV-TTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 379 ~~~~-~~ll~~~gI~i~pgg--------Ris~-~~~-~~e~i~~~~~~l~~~l~~~~ 424 (435)
.+.+ +.+++++||.+.+|. |+++ +.. +++++++++++|++++++..
T Consensus 333 ~~~~~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~~ 389 (393)
T 3kgw_A 333 WRDIVSYVLDHFSIEISGGLGPTEERVLRIGLLGYNATTENVDRVAEALREALQHCP 389 (393)
T ss_dssp HHHHHHHHHHHHCEECBCCCGGGTTTEEEEECCGGGCCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhCCEEEeCCcccCCCCEEEEEecccCCCHHHHHHHHHHHHHHHHhhh
Confidence 4444 666554599999862 9997 533 78999999999999998765
No 113
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=99.96 E-value=1.3e-27 Score=231.62 Aligned_cols=289 Identities=16% Similarity=0.081 Sum_probs=203.6
Q ss_pred cccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHh----CCCCEEEEcCCCChhhHHHHh---hCC
Q 013839 92 SVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRF----HPESHIYFPDPTWSNHHNIWR---DAQ 164 (435)
Q Consensus 92 ~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~----~~gd~Vlv~~p~y~~~~~~~~---~~g 164 (435)
.+..++++.+++++ +.. +++++ +++||++|+.++ +.++. .+||+|++++|+|+.+...+. ..|
T Consensus 43 ~~~~~l~~~la~~~-g~~-----~~~v~--~~~g~t~a~~~~--~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g 112 (382)
T 4eb5_A 43 EAVQEAREKVAKLV-NGG-----GGTVV--FTSGATEANNLA--IIGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQG 112 (382)
T ss_dssp HHHHHHHHHHHHHH-TCT-----TEEEE--EESSHHHHHHHH--HHHHHHHHGGGCCEEEEETTCCHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHh-CCC-----CCeEE--EcCchHHHHHHH--HHHHHhhccCCCCEEEECCCcchHHHHHHHHHHhCC
Confidence 45788999999998 332 45777 899999999998 55555 799999999999998866654 369
Q ss_pred CCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCC
Q 013839 165 IPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGD 244 (435)
Q Consensus 165 ~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~ 244 (435)
++++.++. + +++.+|+++|+++++ ++++++++++|+||||..++ +++|.++|++||++ |+|++|.. ....
T Consensus 113 ~~~~~v~~-~-~~~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~-i~D~a~~~-g~~~ 182 (382)
T 4eb5_A 113 FEVEYIPV-G-KYGEVDVSFIDQKLR---DDTILVSVQHANNEIGTIQP---VEEISEVLAGKAAL-HIDATASV-GQIE 182 (382)
T ss_dssp CEEEEECB-C-TTSCBCHHHHHHHCC---TTEEEEECCSBCTTTCBBCC---HHHHHHHHTTSSEE-EEECTTTB-TTBC
T ss_pred cEEEEecc-C-CCCccCHHHHHHHhc---CCCeEEEEeccCCCccccCC---HHHHHHHHHHCCCE-EEEcchhc-CCcc
Confidence 99999987 3 356799999999997 57899999999999999987 56899999999999 99999862 2111
Q ss_pred CcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHH---HHhhccccCCChhHHHHHHHH
Q 013839 245 LDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQ---QIARAMYGSPPVHGILLVATI 321 (435)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~q~~~~~~ 321 (435)
. ++... +.++++.|+||.+|++| +||+++ +++. .+...+. ........+++...+.++..+
T Consensus 183 --~---~~~~~----~~di~~~s~sK~~g~~g--~G~~~~---~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 246 (382)
T 4eb5_A 183 --V---DVEKI----GADMLTISSNDIYGPKG--VGALWI---RKEA--KLQPVILGGGQENGLRSGSENVPSIVGFGKA 246 (382)
T ss_dssp --C---CHHHH----TCSEEEEETGGGTCCSS--CEEEEE---ETTC--CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHH
T ss_pred --c---Ccccc----CCCEEEeehHHhcCCCc--eEEEEE---cccc--ccCceecCCCccccccCCCccHHHHHHHHHH
Confidence 1 12111 34688999999988666 688864 3330 0111000 001122334555555665556
Q ss_pred hCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCc---ceeEec---CCCHHHHHHHhhhccEEEeC
Q 013839 322 LSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQL---GMFCFS---GLTPYQVDRLAKEFHIYMTQ 395 (435)
Q Consensus 322 l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~---g~~~~~---~~~~~~~~~ll~~~gI~i~p 395 (435)
+... .+.+++.+++++++++.+.+.|++++ ++.+..+.+ +.++++ +.+.+.+.+.|.++||.+.+
T Consensus 247 l~~~------~~~~~~~~~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~ 317 (382)
T 4eb5_A 247 AEIT------AMEWREEAERLRRLRDRIIDNVLKIE---ESYLNGHPEKRLPNNVNVRFSYIEGESIVLSLDMAGIQAST 317 (382)
T ss_dssp HHHH------HHHHHHHHHHHHHHHHHHHHHHTTST---TEEECSCSSSBCTTEEEEEETTSCHHHHHHHHHHHTCBCBC
T ss_pred HHHH------HHhHHHHHHHHHHHHHHHHHHHhhCC---CeEEeCCcccCCCCEEEEEeCCcCHHHHHHHHHHCCEEEec
Confidence 5422 24567788899999999999998763 144444431 323333 44555554444678999987
Q ss_pred C-------------------------C--cEEecc-CCCCcHHHHHHHHHHHHHhhhh
Q 013839 396 D-------------------------G--RISMAG-VTTGNVNYLANAIHEVTRSEQE 425 (435)
Q Consensus 396 g-------------------------g--Ris~~~-~~~e~i~~~~~~l~~~l~~~~~ 425 (435)
| + ||+++. .+++++++++++|+++++++..
T Consensus 318 g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~ 375 (382)
T 4eb5_A 318 GSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIERLRS 375 (382)
T ss_dssp CCGGGTSSCCCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCCCcccHHHHHcCCChhccCCeEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4 2 999863 3789999999999999987664
No 114
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Probab=99.96 E-value=1.5e-27 Score=228.54 Aligned_cols=287 Identities=12% Similarity=0.036 Sum_probs=202.3
Q ss_pred CcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhh--HHHHhhCCCCee
Q 013839 91 ASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNH--HNIWRDAQIPER 168 (435)
Q Consensus 91 ~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~--~~~~~~~g~~~~ 168 (435)
..+..++++.+++++. ... .++++. +++||++|+.++ +..++. |+|++++|+|..+ ...++..|++++
T Consensus 32 ~~~~~~l~~~la~~~g-~~~---~~~~v~--~t~g~t~a~~~~--~~~~~~--d~vl~~~~~~~~~~~~~~~~~~g~~~~ 101 (353)
T 2yrr_A 32 LRVNRAIQERLAALFD-PGE---GALVAA--LAGSGSLGMEAG--LANLDR--GPVLVLVNGAFSQRVAEMAALHGLDPE 101 (353)
T ss_dssp HHHHHHHHHHHHHHHC-CCT---TCEEEE--ESSCHHHHHHHH--HHTCSC--CCEEEEECSHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHHHhC-CCC---CCceEE--EcCCcHHHHHHH--HHHhcC--CcEEEEcCCCchHHHHHHHHHcCCceE
Confidence 3567899999999983 321 145677 899999999888 555544 8999999998875 455677899999
Q ss_pred eeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCccc
Q 013839 169 TYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKD 248 (435)
Q Consensus 169 ~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~ 248 (435)
.++. ++++.+|++++++.+++. +++++++++|+||||..++ +++|.++|++||+++|+|++|. +.... .
T Consensus 102 ~v~~--~~~~~~d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~~li~D~a~~-~~~~~--~- 170 (353)
T 2yrr_A 102 VLDF--PPGEPVDPEAVARALKRR--RYRMVALVHGETSTGVLNP---AEAIGALAKEAGALFFLDAVTT-LGMLP--F- 170 (353)
T ss_dssp EEEC--CTTSCCCHHHHHHHHHHS--CCSEEEEESEETTTTEECC---HHHHHHHHHHHTCEEEEECTTT-TTTSC--C-
T ss_pred EEeC--CCCCCCCHHHHHHHHHhC--CCCEEEEEccCCCcceecC---HHHHHHHHHHcCCeEEEEcCcc-ccccc--c-
Confidence 9998 335679999999999831 6788999999999999987 5589999999999999999984 32211 1
Q ss_pred HHHHHHhhhcCCeEEEEecccccc-cccCCcccEEEEEecChhHHHHHHHHHH-------------HHh--hccccCCCh
Q 013839 249 AQAIRIFLEDEHLIGCAQSYAKSM-GLYGHRVGCLSILCVDSKQAAAIRSQIQ-------------QIA--RAMYGSPPV 312 (435)
Q Consensus 249 ~~~~~~~~~~~~~~i~~~s~SK~~-g~~G~RvG~~~~~~~~~~~~~~~~~~l~-------------~~~--~~~~~~~~~ 312 (435)
++..+ +..+++.|++|.+ +.+| +||+++ +++ +++.++ ... .....+++.
T Consensus 171 --~~~~~----~~d~~~~s~~K~~~~~~g--~G~~~~---~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (353)
T 2yrr_A 171 --SMRAM----GVDYAFTGSQKCLSAPPG--LAPIAA---SLE----ARKAFTGKRGWYLDLARVAEHWERGGYHHTTPV 235 (353)
T ss_dssp --CHHHH----TCSEEECCTTSTTCCCSS--CEEEEE---CHH----HHHHCCCCSCSTTCHHHHHHHHTTCCCSSCCCH
T ss_pred --ccccc----CceEEEecCcccccCCCc--eEEEEE---CHH----HHHHhccCCCccccHHHHhhhhhcCCCCCCCCH
Confidence 12111 2357788999965 5456 699974 777 554443 111 122335666
Q ss_pred hHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccC--cceeEecC----CCHHHHHHHh
Q 013839 313 HGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQ--LGMFCFSG----LTPYQVDRLA 386 (435)
Q Consensus 313 ~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~--~g~~~~~~----~~~~~~~~ll 386 (435)
..+.++..++.... ...+++.+++++++++++.+.|++++ +.+..+. +++++|+. .+.+.+.+.|
T Consensus 236 ~~~~a~~~al~~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 306 (353)
T 2yrr_A 236 LLHYALLEALDLVL-----EEGVAARERRAREVYAWVLEELKARG----FRPYPKASPLPTVLVVRPPEGVDADRLVRAL 306 (353)
T ss_dssp HHHHHHHHHHHHHH-----HHCHHHHHHHHHHHHHHHHHHHHHTT----CEESCSSSBCTTEEEEECCTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-----HhhHHHHHHHHHHHHHHHHHHHHHCC----CccccCccCCCeEEEEECCCCCCHHHHHHHH
Confidence 66666666664321 12267788899999999999998875 3444443 45555553 3455554444
Q ss_pred hhccEEEeCC------C--cEEe-ccCCCCcHH-HHHHHHHHHHHh
Q 013839 387 KEFHIYMTQD------G--RISM-AGVTTGNVN-YLANAIHEVTRS 422 (435)
Q Consensus 387 ~~~gI~i~pg------g--Ris~-~~~~~e~i~-~~~~~l~~~l~~ 422 (435)
.++||.+.+| + |+++ ...++++++ +++++|++++++
T Consensus 307 ~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~~ 352 (353)
T 2yrr_A 307 YAEGVAVAGGIGPTRGQVLRLGLMGEGARREAYQAFLKALDRALAL 352 (353)
T ss_dssp HHTTEECEECCGGGTTTCEEEECSGGGSCHHHHHHHHHHHHHHHHC
T ss_pred HHCCEEEeCCccccCCCeEEEecCccCCHHHHHHHHHHHHHHHHhh
Confidence 5679999875 2 9998 434788898 999999988753
No 115
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.96 E-value=8.8e-28 Score=233.98 Aligned_cols=327 Identities=11% Similarity=0.071 Sum_probs=219.8
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCC-CCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCc
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEF-LESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSG 126 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg 126 (435)
++...+|++.|.+...-|. .++.+.+.+.+.+..... ..+.+..-..++++.+++++ + ++++. +++||
T Consensus 34 ~g~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~-g-------~~~v~--~~~~g 102 (392)
T 3ruy_A 34 EGNRYMDLLSAYSAVNQGH-RHPKIINALIDQANRVTLTSRAFHSDQLGPWYEKVAKLT-N-------KEMVL--PMNTG 102 (392)
T ss_dssp TCCEEEESSHHHHTCTTCB-TCHHHHHHHHHHHTTCSCCCTTSEETTHHHHHHHHHHHH-T-------CSEEE--EESSH
T ss_pred CCCEEEEcCCChhhhccCC-CCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHHhc-C-------CCEEE--EeCcH
Confidence 4578899998864221111 233444444444432111 11122334578888888887 3 23666 89999
Q ss_pred hhHHHHHHHHHHHh--------CCCCEEEEcCCCChhhHHHHhhCCCC-------------eeeeeecCCCCCCcChHhH
Q 013839 127 TGACRLFAEFQRRF--------HPESHIYFPDPTWSNHHNIWRDAQIP-------------ERTYHYYDPDSKSLDFAAL 185 (435)
Q Consensus 127 ~~a~~~~~~~~~~~--------~~gd~Vlv~~p~y~~~~~~~~~~g~~-------------~~~v~~~~~~~~~~d~e~l 185 (435)
++|+.++..+.... ..||+|+++.|+|.++...+...+.. +..++. .|+++|
T Consensus 103 t~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l 175 (392)
T 3ruy_A 103 AEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPY-------GDLEAL 175 (392)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECT-------TCHHHH
T ss_pred HHHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCc-------ccHHHH
Confidence 99999884322221 23689999999997765544433222 111111 289999
Q ss_pred HHHhhcCCCCcEEEEeCCCCCCCCCCCCHHH-HHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEE
Q 013839 186 MDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQ-WREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGC 264 (435)
Q Consensus 186 ~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~-l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~ 264 (435)
+++++ +++++|++++|+||||.+++.++ +++|.++|++||+++|+||+|.++.+.+. .... ...+...++
T Consensus 176 ~~~l~---~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~---~~~~-~~~~~~~d~-- 246 (392)
T 3ruy_A 176 KAAIT---PNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGK---VFAC-DWDNVTPDM-- 246 (392)
T ss_dssp HHHCC---TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSS---SSGG-GGGTCCCSE--
T ss_pred HHHhc---cCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcccc---chhh-hccCCCCCE--
Confidence 99997 67899999999999999996555 99999999999999999999988776531 1111 111222233
Q ss_pred EecccccccccC-CcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Q 013839 265 AQSYAKSMGLYG-HRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQ 343 (435)
Q Consensus 265 ~~s~SK~~g~~G-~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~ 343 (435)
.++||.++ +| +|+||+++ +++ +++.+.........+.+.+++.++..++... +. ++.+++++
T Consensus 247 -~~~SK~l~-gG~~~~G~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~-------~~-~~~~~~~~ 309 (392)
T 3ruy_A 247 -YILGKALG-GGVFPISCAAA---NRD----ILGVFEPGSHGSTFGGNPLACAVSIAALEVL-------EE-EKLTERSL 309 (392)
T ss_dssp -EEECGGGG-TTTSCCEEEEE---CHH----HHTTCCTTSSCCSSTTCHHHHHHHHHHHHHH-------HH-TTHHHHHH
T ss_pred -EEEchhhh-CChhhhEEEEE---CHH----HHhhhccCCcCCCCCCCHHHHHHHHHHHHHH-------Hh-hhHHHHHH
Confidence 36789876 46 99999974 777 7776666555556688889998888888642 12 56778889
Q ss_pred HHHHHHHHHHHhhCCCCCccccccCcceeEec--CCCHHHHHHHhhhccEEEeCCC----cEEecc-CCCCcHHHHHHHH
Q 013839 344 RKRTTLRQNLEKLGSSLNWEHITNQLGMFCFS--GLTPYQVDRLAKEFHIYMTQDG----RISMAG-VTTGNVNYLANAI 416 (435)
Q Consensus 344 ~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~ll~~~gI~i~pgg----Ris~~~-~~~e~i~~~~~~l 416 (435)
++++++.+.|++++.+ .+....+.++++.|. +...++...+ .++||.+.|++ |+++.. .+++++++++++|
T Consensus 310 ~~~~~l~~~L~~~~~~-~~~~~~~~g~~~~~~~~~~~~~l~~~l-~~~gi~v~~~~~~~iRi~~~~~~~~~~i~~~~~~l 387 (392)
T 3ruy_A 310 QLGEKLVGQLKEIDNP-MITEVRGKGLFIGIELNEPARPYCEQL-KAAGLLCKETHENVIRIAPPLVISEEDLEWAFQKI 387 (392)
T ss_dssp HHHHHHHHHHTTCCCT-TEEEEEEETTEEEEEESSCSHHHHHHH-HTTTEECCCBTTTEEEECCCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-CceEEEeeeeEEEEEEcchHHHHHHHH-HHCCcEEecCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 9999999999887532 234445566655554 2133444555 57899999985 888432 3789999999999
Q ss_pred HHHH
Q 013839 417 HEVT 420 (435)
Q Consensus 417 ~~~l 420 (435)
++++
T Consensus 388 ~~~l 391 (392)
T 3ruy_A 388 KAVL 391 (392)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8875
No 116
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1
Probab=99.96 E-value=2.2e-27 Score=227.80 Aligned_cols=326 Identities=14% Similarity=0.045 Sum_probs=217.5
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCch
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~ 127 (435)
.++..|+|+.+.+ ..+++.+.+++.....+....|++.....++++.+++++ +. ++++. +++||+
T Consensus 5 ~~~~~id~~~~~~------~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~la~~~-g~------~~~v~--~~~~gt 69 (356)
T 1v72_A 5 SRPPALGFSSDNI------AGASPEVAQALVKHSSGQAGPYGTDELTAQVKRKFCEIF-ER------DVEVF--LVPTGT 69 (356)
T ss_dssp -CCCCCBCSCGGG------CCCCHHHHHHHHHTTSSCCCSTTCSHHHHHHHHHHHHHH-TS------CCEEE--EESCHH
T ss_pred CCCceEeeccCCc------cCCCHHHHHHHHhhccCcccccccchHHHHHHHHHHHHh-CC------CCcEE--EeCCcc
Confidence 3467899998874 122333444444333222345766666778888888887 32 23566 899999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCChhhHHH--HhhC--CCCeeeeeecCCCCCCcChHhHHH-HhhcC----CCCcEE
Q 013839 128 GACRLFAEFQRRFHPESHIYFPDPTWSNHHNI--WRDA--QIPERTYHYYDPDSKSLDFAALMD-DIKNA----PDSSFF 198 (435)
Q Consensus 128 ~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~--~~~~--g~~~~~v~~~~~~~~~~d~e~l~~-~i~~~----~~~~~~ 198 (435)
+|+.++ +..++.+||+|+++.|+|...... +... |++++.++.. ++.+|+++|++ ++.+. .+++++
T Consensus 70 ~a~~~a--l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~---~~~~d~~~l~~~~i~~~~~~~~~~~~~ 144 (356)
T 1v72_A 70 AANALC--LSAMTPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGP---AAKLDIVRLRERTREKVGDVHTTQPAC 144 (356)
T ss_dssp HHHHHH--HHTSCCTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCCG---GGCCCHHHHHHHTTSSTTCTTSCEEEE
T ss_pred HHHHHH--HHHhcCCCCEEEEcCccchhhhhchHHHHHhCCcEEEEecCC---CCeEcHHHHHHHhhhcchhhccCCceE
Confidence 998888 666678999999999998766544 6666 9999888862 36899999999 88731 126789
Q ss_pred EEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccC--CCCcccHHHHHHhh-hcCCeEEEEeccccccccc
Q 013839 199 LLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFAS--GDLDKDAQAIRIFL-EDEHLIGCAQSYAKSMGLY 275 (435)
Q Consensus 199 v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~--~~~~~~~~~~~~~~-~~~~~~i~~~s~SK~~g~~ 275 (435)
+++++|+| ||.+++.+++++|.++|++||+++|+|++|..+.. .+. . ...+. +.... +++.|+||. +
T Consensus 145 v~~~~~~~-tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~--~---~~~~~~~~~~d-~~~~s~sK~-g-- 214 (356)
T 1v72_A 145 VSITQATE-VGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGC--S---PAEMTWKAGVD-ALSFGATKN-G-- 214 (356)
T ss_dssp EEEESSCT-TSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTC--C---TTTTTGGGTCC-EEEECCGGG-T--
T ss_pred EEEEcCCC-CCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCC--C---HHHhhhhhcCC-EEEEecccC-C--
Confidence 99999987 99999999999999999999999999999864321 110 0 00110 11122 445689998 4
Q ss_pred CCccc--EEEEEecChhHHHHHHHHHHHHhhccc--cCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013839 276 GHRVG--CLSILCVDSKQAAAIRSQIQQIARAMY--GSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQ 351 (435)
Q Consensus 276 G~RvG--~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 351 (435)
.|+| |++ + +++ +++.+........ ...+...+..+...+.+. ......++++++++++.+
T Consensus 215 -~~~G~g~~~--~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~~~~~~~l~~ 278 (356)
T 1v72_A 215 -VLAAEAIVL--F-NTS----LATEMSYRRKRAGHLSSKMRFLSAQIDAYLTDD--------LWLRNARKANAAAQRLAQ 278 (356)
T ss_dssp -CSSCEEEEE--S-SGG----GHHHHHHHHHHTTCCCSSTHHHHHHHHHHTSTT--------HHHHHHHHHHHHHHHHHH
T ss_pred -CcCccEEEE--E-CHH----HHhhHHHHhhccCchhhhHHHHHHHHHHHHHhh--------hHHHHHHHHHHHHHHHHH
Confidence 3566 664 3 777 6555554332211 111223333334455432 122345667788888899
Q ss_pred HHHhhCCCCCccccccCcceeEecCCCHHHHHHHhhhccEEEeCC----C--cEEecc-CCCCcHHHHHHHHHHHHHhh
Q 013839 352 NLEKLGSSLNWEHITNQLGMFCFSGLTPYQVDRLAKEFHIYMTQD----G--RISMAG-VTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 352 ~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ll~~~gI~i~pg----g--Ris~~~-~~~e~i~~~~~~l~~~l~~~ 423 (435)
.|+++. ++.+..+.+++++|+.+..++.+.+ .++||.+.|| + |+++.. .+++++++++++|++++++.
T Consensus 279 ~L~~~~---g~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~v~~g~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~~ 353 (356)
T 1v72_A 279 GLEGLG---GVEVLGGTEANILFCRLDSAMIDAL-LKAGFGFYHDRWGPNVVRFVTSFATTAEDVDHLLNQVRLAADRT 353 (356)
T ss_dssp HHTTCT---TEEEESCCCSSEEEEEECHHHHHHH-HHTTCBCBCSSSSTTEEEEECCTTCCHHHHHHHHHHHHHTC---
T ss_pred HHhhCC---CcEEccCCCccEEEEEcCHHHHHHH-HhcCeEEeccccCCCeEEEEecCCCCHHHHHHHHHHHHHHHHhh
Confidence 987752 2455556778889988776666666 5689999965 2 998743 37899999999999887654
No 117
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=99.96 E-value=2.3e-27 Score=232.28 Aligned_cols=288 Identities=11% Similarity=0.056 Sum_probs=208.3
Q ss_pred ccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChh--hHHHHhhCCCCeeee
Q 013839 93 VSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSN--HHNIWRDAQIPERTY 170 (435)
Q Consensus 93 g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~--~~~~~~~~g~~~~~v 170 (435)
...++++.+++++. ... ++.+. ++.||++|+.++ +..++.+||+|++++|+|.+ +...++..|++++.+
T Consensus 47 ~~~~~~~~la~~~~-~~~----~~~v~--~~~sgt~al~~~--~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v 117 (411)
T 3nnk_A 47 YMNEVMALYRGVFR-TEN----RWTML--VDGTSRAGIEAI--LVSAIRPGDKVLVPVFGRFGHLLCEIARRCRAEVHTI 117 (411)
T ss_dssp HHHHHHHHHHHHHT-CCC----SEEEE--EESCHHHHHHHH--HHHHCCTTCEEEEEECSHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHhC-CCC----CcEEE--ECCCcHHHHHHH--HHHhcCCCCEEEEecCCchHHHHHHHHHHcCCeEEEE
Confidence 34678888888873 321 12255 788889999988 66678999999999999977 888888999999999
Q ss_pred eecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHH
Q 013839 171 HYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQ 250 (435)
Q Consensus 171 ~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~ 250 (435)
+. ++++.+|+++|++++++ .+++++++++|+||||.+.+ +++|.++|++||+++|+|+++...... .
T Consensus 118 ~~--~~~~~~d~~~l~~~i~~--~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~~~~~-~----- 184 (411)
T 3nnk_A 118 EV--PWGEVFTPDQVEDAVKR--IRPRLLLTVQGDTSTTMLQP---LAELGEICRRYDALFYTDATASLGGNP-L----- 184 (411)
T ss_dssp EC--CTTCCCCHHHHHHHHHH--HCCSEEEEESEETTTTEECC---CTTHHHHHHHHTCEEEEECTTTBTTBC-C-----
T ss_pred ec--CCCCCCCHHHHHHHHhh--CCCeEEEEeCCCCCcceecc---HHHHHHHHHHcCCEEEEECCcccCCcc-c-----
Confidence 87 44578899999999973 26789999999999999987 558999999999999999996432211 1
Q ss_pred HHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHh---------------------------
Q 013839 251 AIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIA--------------------------- 303 (435)
Q Consensus 251 ~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~--------------------------- 303 (435)
. ....+.++++.|++|.++ .+.++||+++ +++ +++.+....
T Consensus 185 ~----~~~~~~d~~~~s~~K~l~-~~~g~g~~~~---~~~----~~~~~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~ 252 (411)
T 3nnk_A 185 E----TDVWGLDAVSAGMQKCLG-GPSGTSPITL---SAR----MEEAIRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLG 252 (411)
T ss_dssp C----TTTTTCSEEECCSTTTTC-CCSSEEEEEE---CHH----HHHHHHTTCCCCGGGCCTTCCCCSSCCCSCSTTCHH
T ss_pred c----hhccCCcEEEecCccccC-CCCceEEEEE---CHH----HHHHHhhcccccccccccccccccCCCCcccccchH
Confidence 0 112245788999999754 3345899964 888 776666532
Q ss_pred ---------hccccCCChhHHHHHHHHhCChhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhCCCCCccccccC---cc
Q 013839 304 ---------RAMYGSPPVHGILLVATILSDPNLKSLWIDE-VKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQ---LG 370 (435)
Q Consensus 304 ---------~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~---~g 370 (435)
.....+++...+.++..++... .+. +++.+++++++++++.+.|++++. .+..+. .+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~------~~~g~~~~~~~~~~~~~~l~~~L~~~g~----~~~~~~~~~~~ 322 (411)
T 3nnk_A 253 MVMDYWGPERLNHHTEATTALFGARECARLI------LQEGLDYGIARHKLHGDALVKGIQAMGL----ETFGDLKHKMN 322 (411)
T ss_dssp HHHHHHSTTCCCCSCCCHHHHHHHHHHHHHH------HHHCHHHHHHHHHHHHHHHHHHHHHTTC----CBCSCGGGBCS
T ss_pred HHHhhhccccCCCCCCCHHHHHHHHHHHHHH------HHhhHHHHHHHHHHHHHHHHHHHHHcCC----EeCCCcccccc
Confidence 0112345556666665555432 133 678889999999999999998864 333333 24
Q ss_pred eeEecC----CCHHHH-HHHhhhccEEEeCC------C--cEEe-ccC-CCCcHHHHHHHHHHHHHhhh
Q 013839 371 MFCFSG----LTPYQV-DRLAKEFHIYMTQD------G--RISM-AGV-TTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 371 ~~~~~~----~~~~~~-~~ll~~~gI~i~pg------g--Ris~-~~~-~~e~i~~~~~~l~~~l~~~~ 424 (435)
.+.++. .+.+.+ ..+++++||.+.+| + ||++ +.. +++++++++++|++++++..
T Consensus 323 ~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~~ 391 (411)
T 3nnk_A 323 NVLGVVIPQGINGDQARKLMLEDFGIEIGTSFGPLHGKVWRIGTMGYNARKDCVMTTLSALEAVLNYLK 391 (411)
T ss_dssp SEEEEECCTTCCHHHHHHHHHHHHSEEEEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCeEEeCccCCCCCCEEEEeCccCcCCHHHHHHHHHHHHHHHHHcC
Confidence 455543 355544 55656569999886 1 9997 533 67899999999999998755
No 118
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}
Probab=99.96 E-value=2e-27 Score=234.45 Aligned_cols=344 Identities=10% Similarity=0.004 Sum_probs=201.7
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCch
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~ 127 (435)
++...+|++.|.+.+.-|. .++.+++++.+++... . .|.+..+..+.++++++++..... ...+++. +++||+
T Consensus 27 ~g~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~-~-~~~~~~~~~~~~~~l~~~la~~~~--~~~~~v~--~~~gg~ 99 (430)
T 3i4j_A 27 AGRRYLDGSSGALVANIGH-GRAEVGERMAAQAARL-P-FVHGSQFSSDVLEEYAGRLARFVG--LPTFRFW--AVSGGS 99 (430)
T ss_dssp TSCEEEETTHHHHTCTTCB-CCHHHHHHHHHHHHHC-C-CCCTTTCEEHHHHHHHHHHHHHTT--CTTCEEE--EESSHH
T ss_pred CCCEEEECCCchhccccCC-CCHHHHHHHHHHHHhc-c-cccccccCCHHHHHHHHHHHHhCC--CCCCEEE--EeCcHH
Confidence 4577899999864333332 2444555555554321 1 133333444455555555421111 1145787 999999
Q ss_pred hHHHHHHHHHHHh------CCCCEEEEcCCCChhhHHHHhhCCC---------------CeeeeeecCCCC---CCcChH
Q 013839 128 GACRLFAEFQRRF------HPESHIYFPDPTWSNHHNIWRDAQI---------------PERTYHYYDPDS---KSLDFA 183 (435)
Q Consensus 128 ~a~~~~~~~~~~~------~~gd~Vlv~~p~y~~~~~~~~~~g~---------------~~~~v~~~~~~~---~~~d~e 183 (435)
+|+.++..+.... .++|+|++.+|+|.++.......+. .+..++. .+. ...|++
T Consensus 100 ea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 177 (430)
T 3i4j_A 100 EATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPK--PDPARNGAEDAE 177 (430)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCCEEEEETTC-------------------------CGGGSCEECC--CCTTSCHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCC--CcccchhhHHHH
Confidence 9999984332222 4578999999999887654443332 2222332 111 124668
Q ss_pred hHHHHhhcCC-CCcEEEEeCCCCC-CCCC-CCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCC
Q 013839 184 ALMDDIKNAP-DSSFFLLHPSAHN-PTGV-DPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEH 260 (435)
Q Consensus 184 ~l~~~i~~~~-~~~~~v~~~~p~N-PtG~-~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~ 260 (435)
+|++++++.. +++++++++.++| |+|. .++.+++++|.++|++||+++|+||+|.++...+. ......+.+...
T Consensus 178 ~le~~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~---~~~~~~~~~~~~ 254 (430)
T 3i4j_A 178 GLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGS---PLALSRWSGVTP 254 (430)
T ss_dssp HHHHHHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGGGGTTTCCC
T ss_pred HHHHHHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccc---hhhhhhhcCCCC
Confidence 8998887432 3456666666677 8887 56888899999999999999999999998876531 112211102112
Q ss_pred eEEEEecccccccccC-CcccEEEEEecChhHHHHHHHHHHHH----hhccccCCChhHHHHHHHHhCChhhHHHHHHHH
Q 013839 261 LIGCAQSYAKSMGLYG-HRVGCLSILCVDSKQAAAIRSQIQQI----ARAMYGSPPVHGILLVATILSDPNLKSLWIDEV 335 (435)
Q Consensus 261 ~~i~~~s~SK~~g~~G-~RvG~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~ 335 (435)
+ +.+|||.++ .| +|+||+++ +++ +++.+.+. ....+.+.+.++|.++.++|+... + ++..
T Consensus 255 d---i~t~sK~l~-~G~~r~G~~~~---~~~----i~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~--~--~~~~ 319 (430)
T 3i4j_A 255 D---IAVLGKGLA-AGYAPLAGLLA---APQ----VYETVMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVE--R--EDLT 319 (430)
T ss_dssp S---EEEECGGGT-TTSSCCEEEEE---CHH----HHHHHHHTTCBCCCCCTTTTCHHHHHHHHHHHHHHH--H--TTHH
T ss_pred c---EEEEccccc-CCccccEEEEE---CHH----HHHHHhccCCcccccCCCCCCHHHHHHHHHHHHHHH--c--ccHH
Confidence 2 336899999 59 99999974 888 88888763 334456788899988888886321 0 1223
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCC-C-------------HHHHHHHhhhccEEEeCC-----
Q 013839 336 KIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL-T-------------PYQVDRLAKEFHIYMTQD----- 396 (435)
Q Consensus 336 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~-~-------------~~~~~~ll~~~gI~i~pg----- 396 (435)
+..++..+..++.+.+.+..++. +...++.+. |+++.+ + .++.+.+ .++||.+.|+
T Consensus 320 ~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~~~~~ 394 (430)
T 3i4j_A 320 GAAKERGAQLLAGLQALQARFPQ---MMQVRGTGL-LLGVVLGDLATGQAFETPGIASRIGAAA-LKRGLITYPGSGAEP 394 (430)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTT---EEEEEEETT-EEEEEEC------------CHHHHHHHH-HHTTEECC-------
T ss_pred HHHHHHHHHHHHHHHHHHHhCCC---eEEEEEEEE-EEEEEeccccccCCCccHHHHHHHHHHH-HhCCCEEEecccccC
Confidence 33333334444444444434432 334455554 554432 1 2234555 4689999987
Q ss_pred ---C---cEEec-cCCCCcHHHHHHHHHHHHHhh
Q 013839 397 ---G---RISMA-GVTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 397 ---g---Ris~~-~~~~e~i~~~~~~l~~~l~~~ 423 (435)
+ ||+++ ..+++++++++++|++++++.
T Consensus 395 ~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 428 (430)
T 3i4j_A 395 NGRGDHLLLGPPLSITAAEVDGLLALLAGALEDV 428 (430)
T ss_dssp ----CEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 2 88875 348899999999999998753
No 119
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}
Probab=99.96 E-value=2.2e-27 Score=233.27 Aligned_cols=331 Identities=10% Similarity=0.018 Sum_probs=211.1
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCC---CCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecC
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEF---LESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQAL 124 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~ 124 (435)
++...+|++.|.+...-|+..++.+++++.+++..... ..|+. ....++++.+++++ +.. . +++|. +++
T Consensus 40 ~g~~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~~~~~~~~~~~~-~~~~~l~~~la~~~-~~~---~-~~~v~--~~~ 111 (419)
T 2eo5_A 40 DGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLAHAAANDFYN-IPQLELAKKLVTYS-PGN---F-QKKVF--FSN 111 (419)
T ss_dssp TSCEEEESSGGGGTTTTCBSCCHHHHHHHHHHHTTSCCCSCSCSCC-HHHHHHHHHHHHHS-SCS---S-CEEEE--EES
T ss_pred CCCEEEEccCChhhhccCCCCCHHHHHHHHHHHhhCccccccccCC-HHHHHHHHHHHHhC-CCC---c-CCEEE--EeC
Confidence 45678999998852222222145555555555543211 11332 23456677777665 321 1 35777 999
Q ss_pred CchhHHHHHHHHHHHhC-CCCEEEEcCCCChhhHHH-HhhCC-------------CCeeeeeecCCC--CCC--------
Q 013839 125 SGTGACRLFAEFQRRFH-PESHIYFPDPTWSNHHNI-WRDAQ-------------IPERTYHYYDPD--SKS-------- 179 (435)
Q Consensus 125 gg~~a~~~~~~~~~~~~-~gd~Vlv~~p~y~~~~~~-~~~~g-------------~~~~~v~~~~~~--~~~-------- 179 (435)
||++|+.++. ..... +||+|++++|+|.++... +...| .+++.++..+.. .++
T Consensus 112 gg~ea~~~ai--~~~~~~~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~ 189 (419)
T 2eo5_A 112 SGTEAIEASI--KVVKNTGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPS 189 (419)
T ss_dssp SHHHHHHHHH--HHHHTTSCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCSSSCTTCCCTTTCHH
T ss_pred chHHHHHHHH--HHHHHhhCCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCccccccccccccccch
Confidence 9999999884 33222 389999999999765432 22211 245666652111 112
Q ss_pred ----cChHhHH-HHhhcCC--CCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHH
Q 013839 180 ----LDFAALM-DDIKNAP--DSSFFLLHPSAHNPTGV-DPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQA 251 (435)
Q Consensus 180 ----~d~e~l~-~~i~~~~--~~~~~v~~~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~ 251 (435)
+|+++|+ +++++.. +++++++++..|||||. ..+.+++++|.++|++||+++|+||+|.+|...+. ...
T Consensus 190 ~~~~~~~~~l~~~~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~---~~~ 266 (419)
T 2eo5_A 190 ELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGK---LFA 266 (419)
T ss_dssp HHHHHHHHHHHHTHHHHTCCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSG
T ss_pred hhHHHHHHHHHHHHHhhccCCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcc---hhh
Confidence 4688998 8886421 24556655444567896 66888999999999999999999999998876431 111
Q ss_pred HHHhhhcCCeEEEEecccccccccC-CcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHH
Q 013839 252 IRIFLEDEHLIGCAQSYAKSMGLYG-HRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSL 330 (435)
Q Consensus 252 ~~~~~~~~~~~i~~~s~SK~~g~~G-~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~ 330 (435)
... .+...++ .||||.++ .| +|+||+++ +++ ++ .+ ......+.+.+.++|.++.++|+..
T Consensus 267 ~~~-~~~~~d~---~t~sK~~~-~G~~riG~~~~---~~~----~~-~~-~~~~~~t~~~n~~~~~aa~aal~~~----- 327 (419)
T 2eo5_A 267 IEN-FNTVPDV---ITLAKALG-GGIMPIGATIF---RKD----LD-FK-PGMHSNTFGGNALACAIGSKVIDIV----- 327 (419)
T ss_dssp GGG-GTCCCSE---EEECGGGG-TTTSCCEEEEE---EGG----GC-CC-------CCCCCHHHHHHHHHHHHHH-----
T ss_pred HHh-cCCCCCE---EEeccccc-CCccceEEEEE---chH----hh-cC-CcccCCCCCCCHHHHHHHHHHHHHH-----
Confidence 111 1222333 37999999 59 99999974 666 55 44 2122345677889999888888532
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCC-C----HHHHHHHhhhccEEEeCCC----cEEe
Q 013839 331 WIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL-T----PYQVDRLAKEFHIYMTQDG----RISM 401 (435)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~-~----~~~~~~ll~~~gI~i~pgg----Ris~ 401 (435)
++.+++++++++.+.+.|+++ +....+. |.|+|+.+ . .++...+ .++||.+.|+| ||++
T Consensus 328 -----~~~~~~~~~~~~~l~~~L~~~-----~~~~~~~-g~~~~i~~~~~~~~~~~~~~l-~~~Gv~v~~~~~~~lRis~ 395 (419)
T 2eo5_A 328 -----KDLLPHVNEIGKIFAEELQGL-----ADDVRGI-GLAWGLEYNEKKVRDRIIGES-FKRGLLLLPAGRSAIRVIP 395 (419)
T ss_dssp -----HHHHHHHHHHHHHHHHHHTTS-----SSEEEEE-TTEEEEECSCHHHHHHHHHHH-HHTTEECEEETTTEEEECC
T ss_pred -----HHHHHHHHHHHHHHHHHHHHh-----hhheEee-eEEEEEEEecCccHHHHHHHH-HHCCCEEecCCCCEEEEEC
Confidence 126788888999999998765 1233444 45666665 2 2333555 46899999864 8876
Q ss_pred c-cCCCCcHHHHHHHHHHHHHh
Q 013839 402 A-GVTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 402 ~-~~~~e~i~~~~~~l~~~l~~ 422 (435)
+ ..+++++++++++|++++++
T Consensus 396 ~~~~t~e~i~~~l~~l~~~l~~ 417 (419)
T 2eo5_A 396 PLVISEEEAKQGLDILKKVIKV 417 (419)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHh
Confidence 4 23889999999999998865
No 120
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=99.95 E-value=4.7e-27 Score=230.45 Aligned_cols=289 Identities=10% Similarity=0.083 Sum_probs=206.0
Q ss_pred cccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChh--hHHHHhhCCCCeee
Q 013839 92 SVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSN--HHNIWRDAQIPERT 169 (435)
Q Consensus 92 ~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~--~~~~~~~~g~~~~~ 169 (435)
....++++.+++++. .. ++++ .+++.||++|+.++ +.+++.+||+|++++|+|.. +...++..|++++.
T Consensus 44 ~~~~~l~~~la~~~g-~~-----~~~~-~~~~~s~t~al~~~--~~~l~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~ 114 (416)
T 3isl_A 44 GIMNETMEMLRELFQ-TK-----NRWA-YPIDGTSRAGIEAV--LASVIEPEDDVLIPIYGRFGYLLTEIAERYGANVHM 114 (416)
T ss_dssp HHHHHHHHHHHHHTT-CC-----CSEE-EEEESCHHHHHHHH--HHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHhC-CC-----CCcE-EEecCcHHHHHHHH--HHHhcCCCCEEEEecCCcccHHHHHHHHhcCCeeEE
Confidence 346778888888873 22 2222 12678888999888 66678999999999999987 66778889999999
Q ss_pred eeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccH
Q 013839 170 YHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDA 249 (435)
Q Consensus 170 v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~ 249 (435)
++. ++++.+|++++++++++ ++++++++++|+||||...+ +++|.++|++||+++|+|++|...... . +
T Consensus 115 v~~--~~~~~~d~~~l~~~i~~--~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~~-~--~- 183 (416)
T 3isl_A 115 LEC--EWGTVFDPEDIIREIKK--VKPKIVAMVHGETSTGRIHP---LKAIGEACRTEDALFIVDAVATIGGCE-V--K- 183 (416)
T ss_dssp EEC--CTTCCCCHHHHHHHHHH--HCCSEEEEESEETTTTEECC---CHHHHHHHHHTTCEEEEECTTTTTTSC-C--C-
T ss_pred Eec--CCCCCCCHHHHHHHHhh--CCCcEEEEEccCCCCceecC---HHHHHHHHHHcCCEEEEECCccccCCC-c--c-
Confidence 997 34568899999999973 25689999999999999987 568999999999999999997533221 1 0
Q ss_pred HHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHh--------------------------
Q 013839 250 QAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIA-------------------------- 303 (435)
Q Consensus 250 ~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~-------------------------- 303 (435)
....+.++++.|++|.++ .+.++|++++ +++ +++.+....
T Consensus 184 ------~~~~~~d~~~~s~~K~l~-g~~g~g~~~~---~~~----~~~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~~ 249 (416)
T 3isl_A 184 ------VDEWKIDAAIGGTQKCLS-VPSGMAPITY---NER----VADVIAARKKVERGIATQADRAALSGNRPITSNYF 249 (416)
T ss_dssp ------TTTTTCSEEECCSSSTTC-CCSSEEEEEE---CHH----HHHHHHTC------------------CCCCSCSTT
T ss_pred ------hhhcCCCEEEecCccccC-CCCCeEEEEE---CHH----HHHHhhccccccccccccccchhccCCCCCCcccc
Confidence 011245788999999743 3345899864 777 666555321
Q ss_pred ------------hccccCCChhHHHHHHHHhCChhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCc-
Q 013839 304 ------------RAMYGSPPVHGILLVATILSDPNLKSLWIDE-VKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQL- 369 (435)
Q Consensus 304 ------------~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~- 369 (435)
.....+++...+.++..++... .+. +++.+++++++++++.+.|++.+ +.+..+++
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~------~~~g~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~ 319 (416)
T 3isl_A 250 DLSQLEDYWSERRLNHHTEATTMLYALREGVRLV------LEEGLETRFERHRHHEAALAAGIKAMG----LRLFGDDSC 319 (416)
T ss_dssp CHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHH------HHHCHHHHHHHHHHHHHHHHHHHHHTT----CCBCSCGGG
T ss_pred chHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHH------HHhhHHHHHHHHHHHHHHHHHHHHHcC----CEeccCccc
Confidence 1122345666666666666432 233 77888999999999999999876 34444432
Q ss_pred --ceeEecC----CCHHHH-HHHhhhccEEEeCC------C--cEEec-cCCCCc-HHHHHHHHHHHHHhhh
Q 013839 370 --GMFCFSG----LTPYQV-DRLAKEFHIYMTQD------G--RISMA-GVTTGN-VNYLANAIHEVTRSEQ 424 (435)
Q Consensus 370 --g~~~~~~----~~~~~~-~~ll~~~gI~i~pg------g--Ris~~-~~~~e~-i~~~~~~l~~~l~~~~ 424 (435)
+.+.++. .+.+.+ +.+++++||.+.+| + ||++. ..++++ +++++++|++++++..
T Consensus 320 ~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~~~~~~ 391 (416)
T 3isl_A 320 KMPVVTCVEIPGGIDGESVRDMLLAQFGIEIASSFGPLAGKIWRIGTMGYSCRKENVLFVLAGLEAVLLRHN 391 (416)
T ss_dssp BCTTEEEEECCTTCCHHHHHHHHHHHHCEECBCCCSTTTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHTT
T ss_pred cCCcEEEEeCCCCCCHHHHHHHHHHhCCEEEecCCCCCCCCEEEEecccCCCcHHHHHHHHHHHHHHHHHcC
Confidence 3455443 355544 55655559999975 1 99983 336666 9999999999998754
No 121
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Probab=99.95 E-value=2.5e-27 Score=231.01 Aligned_cols=335 Identities=15% Similarity=0.109 Sum_probs=218.0
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCC--CCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCC
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGS--EFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALS 125 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~g 125 (435)
++...+||+.|.+.+.-+ ..++.+.+.+.+.+... ....| +.....++++.+++++ +.. ++++. +++|
T Consensus 43 ~g~~~ld~~~~~~~~~~g-~~~~~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~-~~~-----~~~v~--~~~g 112 (395)
T 1vef_A 43 EGNEYIDCVGGYGVANLG-HGNPEVVEAVKRQAETLMAMPQTL-PTPMRGEFYRTLTAIL-PPE-----LNRVF--PVNS 112 (395)
T ss_dssp TSCEEEESSHHHHTCTTC-BTCHHHHHHHHHHHHHCCCCCTTS-CCHHHHHHHHHHHHTS-CTT-----EEEEE--EESS
T ss_pred CCCEEEEccCccccccCC-CCCHHHHHHHHHHHHhCCCCcccc-CCHHHHHHHHHHHHhc-CCC-----cCEEE--EcCc
Confidence 456789999986422222 13333333333333211 11224 4456678888888886 322 45777 8999
Q ss_pred chhHHHHHHHHHHHhCCCCEEEEcCCCChh-hHHHHhhCCCCeee---eeecCCCC--CCcChHhHHHHhhcCCCCcEEE
Q 013839 126 GTGACRLFAEFQRRFHPESHIYFPDPTWSN-HHNIWRDAQIPERT---YHYYDPDS--KSLDFAALMDDIKNAPDSSFFL 199 (435)
Q Consensus 126 g~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~-~~~~~~~~g~~~~~---v~~~~~~~--~~~d~e~l~~~i~~~~~~~~~v 199 (435)
|++|+.++...+..+.+||+|++++|+|.+ +...+...|.+.+. +|+..+.. ...|+++|+++++ ++++++
T Consensus 113 g~~a~~~al~~~~~~~~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~~~l~~~i~---~~~~~v 189 (395)
T 1vef_A 113 GTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYNDVEALKRAVD---EETAAV 189 (395)
T ss_dssp HHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECTTCHHHHHHHCC---TTEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEcCCcCCCchhhhhhcCCcccccccCCCCCCeeEeCCCcHHHHHHHhc---cCEEEE
Confidence 999999884322112578999999999965 44466666765321 12210000 0258999999987 578888
Q ss_pred EeCCCCCCCCCCC-CHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCc
Q 013839 200 LHPSAHNPTGVDP-TEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHR 278 (435)
Q Consensus 200 ~~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~R 278 (435)
++++++||||... +.+++++|.++|++||+++|+||+|.++.+.+. . .++... +...+++ |+||.++. |+|
T Consensus 190 ~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~--~-~~~~~~-~~~~d~~---s~sK~~~~-g~~ 261 (395)
T 1vef_A 190 ILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGK--R-FAFEHF-GIVPDIL---TLAKALGG-GVP 261 (395)
T ss_dssp EECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS--S-STHHHH-TCCCSEE---EECGGGGT-TSS
T ss_pred EEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCc--h-hHhhhc-CCCCCEE---EEcccccC-CCc
Confidence 8877789999865 688899999999999999999999987654321 1 111111 2222333 88999995 999
Q ss_pred ccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 013839 279 VGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGS 358 (435)
Q Consensus 279 vG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 358 (435)
+||+++ +++ +++.+.........+++.+.+.++..+++... + ....++++++++.+.+.|++++.
T Consensus 262 ~G~~~~---~~~----~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~------~--~~~~~~~~~~~~~l~~~l~~~~~ 326 (395)
T 1vef_A 262 LGVAVM---REE----VARSMPKGGHGTTFGGNPLAMAAGVAAIRYLE------R--TRLWERAAELGPWFMEKLRAIPS 326 (395)
T ss_dssp CEEEEE---EHH----HHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHH------H--HTTHHHHHHHHHHHHHHHHTSCC
T ss_pred eEEEEe---hHH----HHhhhccCCcCCCcCCCHHHHHHHHHHHHHHH------h--CCHHHHHHHHHHHHHHHHHHhhc
Confidence 999974 666 66655542223445677888887777775321 1 34667888888999999988764
Q ss_pred CCCccccccCcceeEecCC---CHHHHHHHhhhccEEEeCCC----cEEec-cCCCCcHHHHHHHHHHHH
Q 013839 359 SLNWEHITNQLGMFCFSGL---TPYQVDRLAKEFHIYMTQDG----RISMA-GVTTGNVNYLANAIHEVT 420 (435)
Q Consensus 359 ~~~~~~~~~~~g~~~~~~~---~~~~~~~ll~~~gI~i~pgg----Ris~~-~~~~e~i~~~~~~l~~~l 420 (435)
+ .+.. .+..|.|+|+.+ ..++.+.+++++||.+.+++ ||+++ ..+++++++++++|++++
T Consensus 327 ~-~~~~-~~~~g~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l 394 (395)
T 1vef_A 327 P-KIRE-VRGMGLMVGLELKEKAAPYIARLEKEHRVLALQAGPTVIRFLPPLVIEKEDLERVVEAVRAVL 394 (395)
T ss_dssp T-TEEE-EEEETTEEEEEESSCSHHHHHHHHHHHCEECEESSTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred C-ceEE-EEEEEEEEEEEEcChHHHHHHHHHHHCCeEEecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 2 1111 223456777654 34455666537899999874 88764 347899999999998875
No 122
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=99.95 E-value=3.3e-27 Score=230.98 Aligned_cols=322 Identities=13% Similarity=0.016 Sum_probs=217.4
Q ss_pred CeeeeecceecCCCCCcccchHHHHHHHHhcC---CCCCCCC----CCcccHHHHHHHHHhHcCCCCccccCCCeeeEec
Q 013839 51 YKINLGVGAYRDDKGRPVVLQCVREAEAKIAG---SEFLESI----SASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQA 123 (435)
Q Consensus 51 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Y~----~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t 123 (435)
+.+.|..+.+ . +.++.+.+.+...+.. .....|. ...+..++++.+++++ +.. ++++. ++
T Consensus 26 ~~~~ld~~~~-~----~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~-g~~-----~~~v~--~~ 92 (406)
T 3cai_A 26 GWVHFDAPAG-M----LIPDSVATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLV-NAD-----PGGVV--LG 92 (406)
T ss_dssp SCEECBGGGC-C----CCCHHHHHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHH-TCC-----GGGEE--EE
T ss_pred CeEEEeCCCc-C----CCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHh-CCC-----CCeEE--Ee
Confidence 4788888874 1 2333344433333321 1112243 2456789999999998 332 45787 89
Q ss_pred CCchhHHHHHHHHHHH---hCCCCEEEEcCCCChhhHHHHhh----CCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCc
Q 013839 124 LSGTGACRLFAEFQRR---FHPESHIYFPDPTWSNHHNIWRD----AQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSS 196 (435)
Q Consensus 124 ~gg~~a~~~~~~~~~~---~~~gd~Vlv~~p~y~~~~~~~~~----~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~ 196 (435)
+|+++++.++ +.++ +.+||+|+++.|+|..+...+.. .|++++.++. +++++.+|+++|++.++ +++
T Consensus 93 ~g~t~al~~~--~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~-~~~~~~~d~~~l~~~l~---~~~ 166 (406)
T 3cai_A 93 ADRAVLLSLL--AEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEV-DIETGELPTWQWESLIS---KST 166 (406)
T ss_dssp SCHHHHHHHH--HHHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECC-CTTTCCCCGGGHHHHCC---TTE
T ss_pred CChHHHHHHH--HHHHhhccCCCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEec-CcccCCcCHHHHHHHhC---CCc
Confidence 9999999887 4444 68999999999999877555443 6999999987 33567899999999997 678
Q ss_pred EEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccC
Q 013839 197 FFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYG 276 (435)
Q Consensus 197 ~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G 276 (435)
++|++++|+||||.+++ +++|.++|+++|+++|+|++|..... + .+ +... +.++++.|+||.+| ++
T Consensus 167 ~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~g~~-~--~~---~~~~----~~d~~~~s~~K~~g-~~ 232 (406)
T 3cai_A 167 RLVAVNSASGTLGGVTD---LRAMTKLVHDVGALVVVDHSAAAPYR-L--LD---IRET----DADVVTVNAHAWGG-PP 232 (406)
T ss_dssp EEEEEESBCTTTCBBCC---CHHHHHHHHHTTCEEEEECTTTTTTC-C--CC---HHHH----CCSEEEEEGGGGTS-CS
T ss_pred eEEEEeCCcCCccccCC---HHHHHHHHHHcCCEEEEEcccccCCC-C--CC---chhc----CCCEEEeehhhhcC-CC
Confidence 99999999999999987 56899999999999999999863221 1 11 1111 35788999999876 54
Q ss_pred Cccc-EEEEEecChhHHHHHHHHHHHHhh---------ccccCCChhHHHHHHHHhCChh---------hHHHHHHHHHH
Q 013839 277 HRVG-CLSILCVDSKQAAAIRSQIQQIAR---------AMYGSPPVHGILLVATILSDPN---------LKSLWIDEVKI 337 (435)
Q Consensus 277 ~RvG-~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~~~~q~~~~~~l~~~~---------l~~~~~~~~~~ 337 (435)
+| |++ + +++ +++.++.... ....+++...+.++..++.... ...++.+++++
T Consensus 233 --~G~~~~--~-~~~----~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~ 303 (406)
T 3cai_A 233 --IGAMVF--R-DPS----VMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQS 303 (406)
T ss_dssp --CEEEEE--S-CHH----HHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHH
T ss_pred --cCeEEE--E-ehH----HHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHH
Confidence 88 886 3 777 6665544321 1123345555544444443110 01223336788
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCccccccC---cceeEec---CCCHHHHHHHhhhccEEEeCC---------------
Q 013839 338 MADRIQRKRTTLRQNLEKLGSSLNWEHITNQ---LGMFCFS---GLTPYQVDRLAKEFHIYMTQD--------------- 396 (435)
Q Consensus 338 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~---~g~~~~~---~~~~~~~~~ll~~~gI~i~pg--------------- 396 (435)
.+++++++++++.+.|++++. +.+..+. ++ ++++ +.+.+.+.+.|.++||.+.+|
T Consensus 304 ~~~~~~~~~~~l~~~L~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~~~gi~v~~g~~~~~~~~~g~~~~~ 379 (406)
T 3cai_A 304 ADAYLNRVFDYLMVSLRSLPL---VMLIGRPEAQIP-VVSFAVHKVPADRVVQRLADNGILAIANTGSRVLDVLGVNDVG 379 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTCTT---EEECCCCSSBCS-EEEEEETTBCHHHHHHHHHHTTEECEECCSCHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHHHHhcCCC---eEEcCCccccCC-EEEEEECCcCHHHHHHHHHHCCcEEecCChHHHHHHcCCCCCC
Confidence 889999999999999988632 4444442 44 4444 345555544456789999863
Q ss_pred C--cEEeccC-CCCcHHHHHHHHHH
Q 013839 397 G--RISMAGV-TTGNVNYLANAIHE 418 (435)
Q Consensus 397 g--Ris~~~~-~~e~i~~~~~~l~~ 418 (435)
+ |++++.. +++++++++++|++
T Consensus 380 ~~iRis~~~~~t~e~i~~~~~~l~~ 404 (406)
T 3cai_A 380 GAVTVGLAHYSTMAEVDQLVRALAS 404 (406)
T ss_dssp CCEEEECCTTCCHHHHHHHHHHHHT
T ss_pred CeEEEEeecCCCHHHHHHHHHHHHH
Confidence 2 9998643 57889999988864
No 123
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=99.95 E-value=1.1e-26 Score=224.74 Aligned_cols=284 Identities=17% Similarity=0.074 Sum_probs=201.5
Q ss_pred cHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHh----CCCCEEEEcCCCChhhHHHHhh---CCCC
Q 013839 94 STKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRF----HPESHIYFPDPTWSNHHNIWRD---AQIP 166 (435)
Q Consensus 94 ~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~----~~gd~Vlv~~p~y~~~~~~~~~---~g~~ 166 (435)
..++++.+++++ +.. +++++ +++|+++|+.++ +.+++ .+||+|++++|+|+.+...+.. .|++
T Consensus 45 ~~~~~~~la~~~-~~~-----~~~i~--~~~g~~~a~~~~--~~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~g~~ 114 (382)
T 4hvk_A 45 VQEAREKVAKLV-NGG-----GGTVV--FTSGATEANNLA--IIGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFE 114 (382)
T ss_dssp HHHHHHHHHHHT-TCT-----TEEEE--EESSHHHHHHHH--HHHHHHHHGGGCCEEEEETTCCHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHc-CCC-----cCeEE--EECCchHHHHHH--HHHhhhhhcCCCCEEEECCCCcHHHHHHHHHHHhcCCE
Confidence 347788888876 332 45777 899999999988 55555 8999999999999988765543 6999
Q ss_pred eeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCc
Q 013839 167 ERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLD 246 (435)
Q Consensus 167 ~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~ 246 (435)
++.++. .+++.+|+++|+++++ ++++++++++|+||||...+ +++|.++|++||+ +|+|++|...... .
T Consensus 115 ~~~v~~--~~~~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~---~~~i~~l~~~~~~-li~D~a~~~~~~~-~- 183 (382)
T 4hvk_A 115 VEYIPV--GKYGEVDVSFIDQKLR---DDTILVSVQHANNEIGTIQP---VEEISEVLAGKAA-LHIDATASVGQIE-V- 183 (382)
T ss_dssp EEEECB--CTTSCBCHHHHHHHCC---TTEEEEECCSBCTTTCBBCC---HHHHHHHHSSSSE-EEEECTTTBTTBC-C-
T ss_pred EEEecc--CCCCCcCHHHHHHHhc---cCceEEEEECCCCCceeeCC---HHHHHHHHHHcCE-EEEEhHHhcCCCC-C-
Confidence 999988 3456899999999997 67899999999999999987 5589999999999 9999996532211 1
Q ss_pred ccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHH-------hhccccCCChhHHHHHH
Q 013839 247 KDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQI-------ARAMYGSPPVHGILLVA 319 (435)
Q Consensus 247 ~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~q~~~~ 319 (435)
+ ... .+.++++.|+||.+|.+| +|++++ +++ . .+... .......++...+.++.
T Consensus 184 -~---~~~----~~~d~~~~s~~K~~g~~g--~g~~~~---~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (382)
T 4hvk_A 184 -D---VEK----IGADMLTISSNDIYGPKG--VGALWI---RKE----A--KLQPVILGGGQENGLRSGSENVPSIVGFG 244 (382)
T ss_dssp -C---HHH----HTCSEEEEESGGGTSCTT--CEEEEE---ETT----C--CCCCSSCSSCTGGGTSCSCCCHHHHHHHH
T ss_pred -C---chh----cCCCEEEEeHHHhcCCCc--eEEEEE---cCc----c--CcCcccccCCCcCccccCCcCHHHHHHHH
Confidence 1 111 134688999999887666 677753 333 1 11111 01113344556666665
Q ss_pred HHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCc---ceeEe---cCCCHHHHHHHhhhccEEE
Q 013839 320 TILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQL---GMFCF---SGLTPYQVDRLAKEFHIYM 393 (435)
Q Consensus 320 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~---g~~~~---~~~~~~~~~~ll~~~gI~i 393 (435)
.++... .+++++.+++++++++.+.+.|++++. +.+..+++ +.+++ .+.+.+.+.+.|+++||.+
T Consensus 245 ~al~~~------~~~~~~~~~~~~~~~~~l~~~L~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v 315 (382)
T 4hvk_A 245 KAAEIT------AMEWREEAERLRRLRDRIIDNVLKIEE---SYLNGHPEKRLPNNVNVRFSYIEGESIVLSLDMAGIQA 315 (382)
T ss_dssp HHHHHH------HHHHHHHHHHHHHHHHHHHHHHTTSTT---EEECSCSSSBCTTEEEEEETTCCHHHHHHHHHHTTCBC
T ss_pred HHHHHH------HhhHHHHHHHHHHHHHHHHHHHhcCCC---eEEeCCccccCCCEEEEEECCCCHHHHHHHHHHCCEEE
Confidence 665421 256788889999999999999987632 44444332 11222 2456666655567789999
Q ss_pred eCC-------------------------C--cEEecc-CCCCcHHHHHHHHHHHHHhhhhh
Q 013839 394 TQD-------------------------G--RISMAG-VTTGNVNYLANAIHEVTRSEQET 426 (435)
Q Consensus 394 ~pg-------------------------g--Ris~~~-~~~e~i~~~~~~l~~~l~~~~~~ 426 (435)
.+| + |++++. .+++++++++++|++++++....
T Consensus 316 ~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e~i~~~~~~l~~~~~~~~~~ 376 (382)
T 4hvk_A 316 STGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIERLRSM 376 (382)
T ss_dssp BCC--------CCCHHHHHTTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred eeCCccCCCCCcchHHHHHcCCChhhcCCeEEEEcCCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 864 2 999863 36789999999999999876643
No 124
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Probab=99.95 E-value=1.7e-26 Score=225.44 Aligned_cols=252 Identities=11% Similarity=0.006 Sum_probs=182.4
Q ss_pred CeeeeecceecCCCCCcccchHHHHHHHHhcC-CCCCCCC--CCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCch
Q 013839 51 YKINLGVGAYRDDKGRPVVLQCVREAEAKIAG-SEFLESI--SASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 51 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Y~--~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~ 127 (435)
+.-.+++|.| +....+...+.+.+++....+ ...+.|. +..+..++++.+++++ +. + +.+ ++.+|+
T Consensus 21 ~~~~~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~-g~------~-~~i--~~~sG~ 89 (398)
T 2rfv_A 21 DPSTGALSTP-IFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLE-RG------E-AGL--ATASGI 89 (398)
T ss_dssp CTTTCCSSCC-CCCCSBCCCSSHHHHHHHC-----CCSBTTTCCHHHHHHHHHHHHHH-TC------S-EEE--EESSHH
T ss_pred ccCCCCcCCC-CcCCCccccCCHHHHHHhhcCCCCCCceeCCCChHHHHHHHHHHHHh-CC------C-cEE--EECCHH
Confidence 3346888887 766666666666666553221 1133343 4566788999999987 32 1 233 577788
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHH----hhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCC
Q 013839 128 GACRLFAEFQRRFHPESHIYFPDPTWSNHHNIW----RDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPS 203 (435)
Q Consensus 128 ~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~ 203 (435)
+|+.++ +..++.+||+|+++.|+|.++...+ +..|.+++.++. .|++++++.++ ++++++++++
T Consensus 90 ~a~~~~--l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~-------~d~~~l~~~i~---~~~~~v~~~~ 157 (398)
T 2rfv_A 90 SAITTT--LLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDA-------AKPEEIRAAMR---PETKVVYIET 157 (398)
T ss_dssp HHHHHH--HHHHCCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECT-------TSHHHHHHHCC---TTEEEEEEES
T ss_pred HHHHHH--HHHHhCCCCEEEEcCCCcccHHHHHHHHHHHcCCEEEEeCC-------CCHHHHHHhcC---CCCeEEEEEC
Confidence 998888 6667889999999999999887766 778988888875 17899999987 6789999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcc-cEE
Q 013839 204 AHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRV-GCL 282 (435)
Q Consensus 204 p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~Rv-G~~ 282 (435)
|+||||.+++ +++|.++|++||+++|+|++|..+.+.. +. . .+.++++.|+||.++.+|+|+ ||+
T Consensus 158 ~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~------~~----~-~~~di~~~s~sK~~~~~g~~~~G~~ 223 (398)
T 2rfv_A 158 PANPTLSLVD---IETVAGIAHQQGALLVVDNTFMSPYCQQ------PL----Q-LGADIVVHSVTKYINGHGDVIGGII 223 (398)
T ss_dssp SBTTTTBCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCC------GG----G-GTCSEEEEETTTTTTCSSCCCCEEE
T ss_pred CCCCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccCC------ch----h-hCCcEEEEeCcccccCCCCceEEEE
Confidence 9999999986 7799999999999999999998766532 11 1 146789999999998899998 999
Q ss_pred EEEecChhHHHHHHH-HHHHHhhcc-ccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013839 283 SILCVDSKQAAAIRS-QIQQIARAM-YGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKL 356 (435)
Q Consensus 283 ~~~~~~~~~~~~~~~-~l~~~~~~~-~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 356 (435)
++ +++ +++ .++...... ..+.+.+.+.++..+++... . ..++..++.+.+.+.|++.
T Consensus 224 ~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~----~~~~~~~~~~~l~~~l~~~ 282 (398)
T 2rfv_A 224 VG---KQE----FIDQARFVGLKDITGGCMSPFNAWLTLRGVKTLG------I----RMERHCENALKIARFLEGH 282 (398)
T ss_dssp EE---CHH----HHHHHHHTHHHHTTCCCCCHHHHHHHHHHHTTHH------H----HHHHHHHHHHHHHHHHHTC
T ss_pred EE---CHH----HHHHHHHHHHHhCCCCCCCHHHHHHHHhhhhhHH------H----HHHHHHHHHHHHHHHHHcC
Confidence 64 777 554 455444333 45677888888888886421 2 2233445556666666654
No 125
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*
Probab=99.95 E-value=9.3e-27 Score=225.22 Aligned_cols=319 Identities=14% Similarity=0.059 Sum_probs=200.7
Q ss_pred CCC-CeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCc
Q 013839 48 PSP-YKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSG 126 (435)
Q Consensus 48 ~~~-~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg 126 (435)
.+. ++||++.|.+ + ..+++.+.+++. . ...| ..-...+++.+++++ +.. . +++++ +++||
T Consensus 25 ~g~~~v~~~~~~~~-~----~~~~~~v~~a~~----~-~~~~--~~~~~~~~~~~a~~~-g~~-~---~~~~~--~~~gg 85 (374)
T 2aeu_A 25 KGRDALYDLSGLSG-G----FLIDEKDKALLN----T-YIGS--SYFAEKVNEYGLKHL-GGD-E---NDKCV--GFNRT 85 (374)
T ss_dssp TCGGGCEECSSCCC-C----CCCCHHHHHHHT----S-TTHH--HHHHHHHHHHHHHHH-TCC-T---TEEEE--EESSH
T ss_pred cCccceeeecccCC-C----CCCCHHHHHHHH----H-hcCc--hHHHHHHHHHHHHHh-CCC-C---cceEE--EEcCh
Confidence 445 6899998874 2 233333333332 1 1111 111124444444444 432 1 34666 89999
Q ss_pred hhHHHHHHHHHHHhCCCCEEEEcCCCChhhHH---HHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEE-EEeC
Q 013839 127 TGACRLFAEFQRRFHPESHIYFPDPTWSNHHN---IWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFF-LLHP 202 (435)
Q Consensus 127 ~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~-v~~~ 202 (435)
++|+.++ +.++ +||+|+++.|+|+++.. .++..|++++.+ .|+++++++ . +++++ ++++
T Consensus 86 t~a~~~~--~~~~--~gd~Vl~~~~~y~~~~~~~~~~~~~g~~~~~v---------~d~~~l~~~-~---~~~~~~v~~~ 148 (374)
T 2aeu_A 86 SSAILAT--ILAL--KPKKVIHYLPELPGHPSIERSCKIVNAKYFES---------DKVGEILNK-I---DKDTLVIITG 148 (374)
T ss_dssp HHHHHHH--HHHH--CCSEEEEECSSSSCCTHHHHHHHHTTCEEEEE---------SCHHHHHTT-C---CTTEEEEEEC
T ss_pred HHHHHHH--HHhC--CCCEEEEecCCCCccHHHHHHHHHcCcEEEEe---------CCHHHHHhc-C---CCccEEEEEc
Confidence 9999888 5544 99999999998876544 567789888776 278888877 4 57889 9999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEE
Q 013839 203 SAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCL 282 (435)
Q Consensus 203 ~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~ 282 (435)
+||||||. +..++++|.++|++||+++|+|++|..+..++. ...... .. ..+++++|+||.+ +|+|+||+
T Consensus 149 ~p~nptG~--~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~-~~~~~~-~~----~~di~~~S~sK~l--~g~~~G~~ 218 (374)
T 2aeu_A 149 STMDLKVI--ELENFKKVINTAKNKEAIVFVDDASGARVRLLF-NQPPAL-KL----GADLVVTSTDKLM--EGPRGGLL 218 (374)
T ss_dssp BCTTSCBC--CHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHT-TCCCHH-HH----TCSEEEEETTSSS--SSCSCEEE
T ss_pred cCCCCCCC--CcccHHHHHHHHHHcCCEEEEECCccccccccc-ccCCcc-cc----CCcEEEecCcccc--cCcceEEE
Confidence 99999997 789999999999999999999999866531000 000011 11 2468899999995 57899998
Q ss_pred EEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhCC
Q 013839 283 SILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRK----RTTLRQNLEKLGS 358 (435)
Q Consensus 283 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~----~~~l~~~l~~~~~ 358 (435)
++ +++ +++.++........+++.+.+.++..++..... +..+...+..+.. ++.+.+.|..+..
T Consensus 219 ~~---~~~----~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~ 286 (374)
T 2aeu_A 219 AG---KKE----LVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNL-----ERIRKAFERAKNFDLSKIEKLNKELKAIDD 286 (374)
T ss_dssp EE---EHH----HHHHHHHHHHTTTCBCCHHHHHHHHHHHHHCCH-----HHHHHHHHHHHHCCCHHHHHHHHHHTTTCT
T ss_pred EE---CHH----HHHHHHHhhccccCCCCHHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 64 777 777777765444446778888888777754210 1111111111111 4455555544310
Q ss_pred CCCccc-cccCcceeEecCCCH--H------HHHHHhhhccEEEeCCC---------cEEeccC--CCCcHHHHHHHHHH
Q 013839 359 SLNWEH-ITNQLGMFCFSGLTP--Y------QVDRLAKEFHIYMTQDG---------RISMAGV--TTGNVNYLANAIHE 418 (435)
Q Consensus 359 ~~~~~~-~~~~~g~~~~~~~~~--~------~~~~ll~~~gI~i~pgg---------Ris~~~~--~~e~i~~~~~~l~~ 418 (435)
..++.+ ..+.+.++.|..... + ++..+++++||.+.||. ||+++.. .+++++++.+.|++
T Consensus 287 ~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~~g~~~~~~~~~lRi~~~~~~~~~~~l~~l~~~l~~ 366 (374)
T 2aeu_A 287 NINIVYERTPTGFVIKRVYKDDTINIKKLIEIGFNLLKNYGIITITVAGMPGASKSLRIDLTSRDAERIDDNYIIKAIVE 366 (374)
T ss_dssp TEEEEEEECSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHCEECSTTSSSCSSCCSEEEETTSGGGGGSCHHHHHHHHHH
T ss_pred ccCcceeeCCceEEEEeecccccccccchHHHHHHHHHhCCEEEecCCCCCCCCCeEEEEcCCchHHHHHHHHHHHHHHH
Confidence 011343 345555555654432 1 44567778899998861 9998642 23347888888888
Q ss_pred HHHhhh
Q 013839 419 VTRSEQ 424 (435)
Q Consensus 419 ~l~~~~ 424 (435)
+++++.
T Consensus 367 ~l~~~~ 372 (374)
T 2aeu_A 367 SIKMAF 372 (374)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 776653
No 126
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}
Probab=99.95 E-value=8.8e-27 Score=225.47 Aligned_cols=284 Identities=15% Similarity=0.161 Sum_probs=195.6
Q ss_pred HHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhH--HHHhhCCCCeeeeee
Q 013839 95 TKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHH--NIWRDAQIPERTYHY 172 (435)
Q Consensus 95 ~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~--~~~~~~g~~~~~v~~ 172 (435)
.++++.+++++ +... +.+++ .+++||++|+.++ +.+++.+||+|++++|+|.++. ..+...|++++.++.
T Consensus 55 ~~~~~~la~~~-g~~~----~~~~i-~~~~ggt~al~~~--~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~ 126 (376)
T 3f0h_A 55 LENEKFMLEYA-KAPE----GSKAV-FMTCSSTGSMEAV--VMNCFTKKDKVLVIDGGSFGHRFVQLCEIHEIPYVALKL 126 (376)
T ss_dssp HHHHHHHHHHH-TCCT----TCEEE-EESSCHHHHHHHH--HHHHCCTTCCEEEEESSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred HHHHHHHHHHh-CCCC----CceEE-EEcCChhHHHHHH--HHhccCCCCeEEEEeCChhhHHHHHHHHHcCCceEEEeC
Confidence 45666666666 3321 11333 1588889999988 6667889999999998776654 346778999999987
Q ss_pred cCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHH
Q 013839 173 YDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAI 252 (435)
Q Consensus 173 ~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~ 252 (435)
+.++.+|++++++.+. ++++++++++|+||||.+++ +++|.++|++||+++|+|+++..+... . + +
T Consensus 127 --~~~~~~d~~~l~~~~~---~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~~~~~-~--~---~ 192 (376)
T 3f0h_A 127 --EHGKKLTKEKLYEYDN---QNFTGLLVNVDETSTAVLYD---TMMIGEFCKKNNMFFVCDCVSAFLADP-F--N---M 192 (376)
T ss_dssp --CTTCCCCHHHHHTTTT---SCCCEEEEESEETTTTEECC---HHHHHHHHHHTTCEEEEECTTTTTTSC-C--C---H
T ss_pred --CCCCCCCHHHHHHhhc---cCceEEEEecccCCcceecC---HHHHHHHHHHcCCEEEEEcCccccCcc-c--c---c
Confidence 3457899999998776 67889999999999999998 779999999999999999997655432 1 1 1
Q ss_pred HHhhhcCCeEEEEeccccccc-ccCCcccEEEEEecChhHHHHHHHHHHHHhh-----------------ccccCCChhH
Q 013839 253 RIFLEDEHLIGCAQSYAKSMG-LYGHRVGCLSILCVDSKQAAAIRSQIQQIAR-----------------AMYGSPPVHG 314 (435)
Q Consensus 253 ~~~~~~~~~~i~~~s~SK~~g-~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~-----------------~~~~~~~~~~ 314 (435)
.. .+.++++.|+||.++ .+| +|++++ +++ +++.+..... ....+++...
T Consensus 193 ~~----~~~d~~~~s~~K~l~~~~G--~g~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (376)
T 3f0h_A 193 NE----CGADVMITGSQKVLACPPG--ISVIVL---APR----GVERVEKSKVRTMYFDLKDALKNQERGQTPFTPAVGI 259 (376)
T ss_dssp HH----HTCSEEEEETTTTTCCCSS--CEEEEE---CHH----HHHHHHTCCCCCSTTCHHHHHHHHTTTCCSSCCCHHH
T ss_pred cc----cCccEEEecCcccccCCCc--eEEEEE---CHH----HHHHhhcCCCCceeecHHHHHhhcccCCCCCCCcHHH
Confidence 11 124688999999998 566 567653 787 6666653211 0122334433
Q ss_pred HHHHHHHhCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccC--cceeEec--CCCHHHH-HHHhhh
Q 013839 315 ILLVATILSDPNLKSLWID-EVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQ--LGMFCFS--GLTPYQV-DRLAKE 388 (435)
Q Consensus 315 q~~~~~~l~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~--~g~~~~~--~~~~~~~-~~ll~~ 388 (435)
+.++..++..-. +. .+++.+++++++++.+.+.|++++ +....+. .+++.+. +.+.+.+ ..++++
T Consensus 260 ~~a~~~al~~~~-----~~~~~~~~~~~~~~~~~~l~~~L~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 330 (376)
T 3f0h_A 260 LLQINERLKEIK-----KHGGADAEVARIASQAADFRAKIKDLP----FELVSESPANGVTSVHPTTANAYDIFLKLKDE 330 (376)
T ss_dssp HHHHHHHHHHHH-----HTTHHHHHHHHHHHHHHHHHHHTTTSS----EEECCSSBBTTEEEEEESSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----HhcCHHHHHHHHHHHHHHHHHHHHHcC----CccCccccCceEEEEeCCCCCHHHHHHHHHHh
Confidence 344444443211 12 367788888999999999998776 3333322 2333333 4555555 555554
Q ss_pred ccEEEeCCC--------cEEecc-CCCCcHHHHHHHHHHHHHh
Q 013839 389 FHIYMTQDG--------RISMAG-VTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 389 ~gI~i~pgg--------Ris~~~-~~~e~i~~~~~~l~~~l~~ 422 (435)
+||.+.+|. |+++.. .+++++++++++|++++++
T Consensus 331 ~gi~v~~g~~~~~~~~lRis~~~~~t~e~i~~~~~~l~~~l~~ 373 (376)
T 3f0h_A 331 YGIWICPNGGEMKDTIFRVGHIGALTHEDNTTLVNAFKDLQKR 373 (376)
T ss_dssp SSEECEECCGGGTTTCEEEECCSSCCHHHHHHHHHHHHHHHHT
T ss_pred CCEEEecCccccCCCEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 499998762 999853 4889999999999998864
No 127
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.95 E-value=6.7e-27 Score=230.93 Aligned_cols=338 Identities=10% Similarity=0.041 Sum_probs=210.3
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCch
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~ 127 (435)
++...+|+..|.+...-|+ .++.+++++.+++.......| +.....+|++.+++++. . ++++. +++||+
T Consensus 53 ~g~~ylD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~-~~~~~~~l~~~la~~~~--~-----~~~v~--~~~sGs 121 (434)
T 3l44_A 53 DGNKYIDYLAAYGPIITGH-AHPHITKAITTAAENGVLYGT-PTALEVKFAKMLKEAMP--A-----LDKVR--FVNSGT 121 (434)
T ss_dssp TCCEEEECCGGGTTCSSCB-TCHHHHHHHHHHHHHCSCCSS-CCHHHHHHHHHHHHHCT--T-----CSEEE--EESSHH
T ss_pred CCCEEEECCCchhccccCC-CCHHHHHHHHHHHHhCcCCCC-CCHHHHHHHHHHHHhCC--C-----CCEEE--EeCchH
Confidence 5678999999874222222 244444555555543323334 44566788888888863 1 45777 999999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCC-eeeeeecCCCCC------------CcChHhHHHHhhcCCC
Q 013839 128 GACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIP-ERTYHYYDPDSK------------SLDFAALMDDIKNAPD 194 (435)
Q Consensus 128 ~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~-~~~v~~~~~~~~------------~~d~e~l~~~i~~~~~ 194 (435)
+|+.++..+.....++++|++.+|+|.++...+...+.. ...+........ -.|+++|++++.+.++
T Consensus 122 ea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~ 201 (434)
T 3l44_A 122 EAVMTTIRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFNNVETLKEALDKWGH 201 (434)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEETTCCCCSSGGGGBC-------CCCBSSTTCCHHHHTTEEEECTTCHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHhhCCCEEEEEcCccCCCcHHHHhhcCCcccccCCCCcCCCCCcCCCceEecCcccHHHHHHHHHhCCC
Confidence 999998533322337799999999998765433322221 111110000000 0188999998875434
Q ss_pred CcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEeccccccc
Q 013839 195 SSFFLLHPSAHNPTGVDP-TEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMG 273 (435)
Q Consensus 195 ~~~~v~~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g 273 (435)
++++++++.++|++|.+. +++.+++|.++|++||+++|+||+|.+| ..+. ......+ +.... +.|+||.++
T Consensus 202 ~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~-~~g~---~~~~~~~-~~~~d---i~t~sK~~~ 273 (434)
T 3l44_A 202 EVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAF-RFMY---GGAQDLL-GVTPD---LTALGKVIG 273 (434)
T ss_dssp GEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTT-TSSS---SCHHHHH-TCCCS---EEEEEGGGG
T ss_pred CEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccce-eccc---cHHHHHc-CCCCC---eeehhhhhc
Confidence 567777766667777766 8888999999999999999999999988 4321 1122222 21122 457999999
Q ss_pred ccCCcccEEEEEecChhHHHHHHHHHHHH---hhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 013839 274 LYGHRVGCLSILCVDSKQAAAIRSQIQQI---ARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLR 350 (435)
Q Consensus 274 ~~G~RvG~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 350 (435)
+|+|+||+++ +++ +++.+.+. ....+.+.+.+++.++.++|+... + +...++++++++.++
T Consensus 274 -~G~~iG~~~~---~~~----i~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~------~--~~~~~~~~~~~~~l~ 337 (434)
T 3l44_A 274 -GGLPIGAYGG---KKE----IMEQVAPLGPAYQAGTMAGNPASMASGIACLEVLQ------Q--EGLYEKLDELGATLE 337 (434)
T ss_dssp -TTSSCEEEEE---CHH----HHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHT------S--TTHHHHHHHHHHHHH
T ss_pred -CCcCeeeEEE---cHH----HHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHH------c--ccHHHHHHHHHHHHH
Confidence 8999999964 888 77766552 123456778888888877775211 1 223344444444555
Q ss_pred HHHHh----hCCCCCccccccCcceeEec----CC---------C----HHHHHHHhhhccEEEeCCC----cEEeccCC
Q 013839 351 QNLEK----LGSSLNWEHITNQLGMFCFS----GL---------T----PYQVDRLAKEFHIYMTQDG----RISMAGVT 405 (435)
Q Consensus 351 ~~l~~----~~~~~~~~~~~~~~g~~~~~----~~---------~----~~~~~~ll~~~gI~i~pgg----Ris~~~~~ 405 (435)
+.|++ ++. .....+.+.++.|. .. + .++...+ .++||.+.|++ |+++.. +
T Consensus 338 ~~L~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~~~~~rl~~~~-t 412 (434)
T 3l44_A 338 KGILEQAAKHNI---DITLNRLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLM-LQEGVNLAPSKYEAWFLTTEH-T 412 (434)
T ss_dssp HHHHHHHHHTTC---CEEEEEETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHH-HHTTEECCSSTTCCEECCTTC-C
T ss_pred HHHHHHHHhCCC---CEEEEeeccEEEEEEecCcccchhhccccCHHHHHHHHHHH-HHCCeEEeecCCCcEEEeccc-C
Confidence 44443 342 12333444444431 01 1 2233444 56899999985 776544 8
Q ss_pred CCcHHHHHHHHHHHHHhhhh
Q 013839 406 TGNVNYLANAIHEVTRSEQE 425 (435)
Q Consensus 406 ~e~i~~~~~~l~~~l~~~~~ 425 (435)
++++++++++|+++++++..
T Consensus 413 ~e~i~~~l~~l~~~l~~~~~ 432 (434)
T 3l44_A 413 KEDIEYTIEAVGRAFAALAD 432 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999987653
No 128
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*
Probab=99.95 E-value=2e-27 Score=235.11 Aligned_cols=342 Identities=12% Similarity=0.007 Sum_probs=211.3
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccC-CCeeeEecCCc
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKE-GRSAGVQALSG 126 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~-~~v~~~~t~gg 126 (435)
++...+|++.|.+...-|+ .++.+++.+.+++... ..|....|..++++++++++...... .. +++. +++||
T Consensus 41 ~g~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~--~~~~~~~~~~~~~~~l~~~la~~~~~--~~~~~v~--~~~gg 113 (439)
T 3dxv_A 41 NGRELIDLSGAWGAASLGY-GHPAIVAAVSAAAANP--AGATILSASNAPAVTLAERLLASFPG--EGTHKIW--FGHSG 113 (439)
T ss_dssp TSCEEEESSTTTTTCTTCB-SCHHHHHHHHHHHHSC--SCSCSSSSEEHHHHHHHHHHHHTTTC--TTTEEEE--EESSH
T ss_pred CCCEEEECCCchhhccCCC-CCHHHHHHHHHHHHhc--cCccccccCCHHHHHHHHHHHHhCCC--CCCCEEE--EeCCH
Confidence 5678999999986333232 3444555555555432 23444455556666666666332211 12 4777 99999
Q ss_pred hhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhC-CCCe--------------eeeeecCCCCCCc----ChHhHHH
Q 013839 127 TGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDA-QIPE--------------RTYHYYDPDSKSL----DFAALMD 187 (435)
Q Consensus 127 ~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~-g~~~--------------~~v~~~~~~~~~~----d~e~l~~ 187 (435)
++|+..+..+...+.++++|++.+|+|.++....... |... ..++.. ...... |+++|++
T Consensus 114 sea~~~al~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~le~ 192 (439)
T 3dxv_A 114 SDANEAAYRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYR-PYRNDPTGDAILTLLTE 192 (439)
T ss_dssp HHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHCC-------------CEEEECCCCSSS-CBTTBTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCC-cccccccHHHHHHHHHH
Confidence 9999998533222346788999999997665443333 2211 223321 110111 6899999
Q ss_pred Hhh-cCCCCcEEEEeCCCCCCCCCCCC-HHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEE
Q 013839 188 DIK-NAPDSSFFLLHPSAHNPTGVDPT-EEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCA 265 (435)
Q Consensus 188 ~i~-~~~~~~~~v~~~~p~NPtG~~~~-~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 265 (435)
++. ..+++++++++++++|++|.+.+ .+.+++|.++|++||+++|+||+|.+|...+. ...... .+...+++
T Consensus 193 ~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~---~~~~~~-~~~~~di~-- 266 (439)
T 3dxv_A 193 KLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGR---LHCFEH-EGFVPDIL-- 266 (439)
T ss_dssp HHHTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSS---SSGGGG-TTCCCSEE--
T ss_pred HHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCch---hhHHHh-cCCCCCEE--
Confidence 993 32356788888888889988765 45599999999999999999999988765431 111111 12222232
Q ss_pred ecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHH
Q 013839 266 QSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRK 345 (435)
Q Consensus 266 ~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~ 345 (435)
|+||.++ +|+|+||+++ +++ +++.+.......+. .+.+++.++.+++.... + +...++++++
T Consensus 267 -s~sK~~~-~G~riG~~~~---~~~----~~~~~~~~~~~~t~-~~~~~~~aa~aal~~~~------~--~~~~~~~~~~ 328 (439)
T 3dxv_A 267 -VLGKGLG-GGLPLSAVIA---PAE----ILDCASAFAMQTLH-GNPISAAAGLAVLETID------R--DDLPAMAERK 328 (439)
T ss_dssp -EECGGGG-TTSCCEEEEE---EHH----HHTSCSSSSCCTTT-TCHHHHHHHHHHHHHHH------H--TTHHHHHHHH
T ss_pred -EEcchhc-CCcceEEEEE---CHH----HHhhhcCCCcCCCc-ccHHHHHHHHHHHHHHH------h--cCHHHHHHHH
Confidence 8999999 6999999974 777 77766654334445 77888888777775321 1 2344455555
Q ss_pred HHHHHHHHHhhC--CCCCccccccCcceeEecCC---------C---H-HHHHHHhhhccEEEeCCC------cEEecc-
Q 013839 346 RTTLRQNLEKLG--SSLNWEHITNQLGMFCFSGL---------T---P-YQVDRLAKEFHIYMTQDG------RISMAG- 403 (435)
Q Consensus 346 ~~~l~~~l~~~~--~~~~~~~~~~~~g~~~~~~~---------~---~-~~~~~ll~~~gI~i~pgg------Ris~~~- 403 (435)
++.+++.|+++. .+ .+...++.+ .|+++.+ + . ++...++ ++||.+.|+| ||+++.
T Consensus 329 ~~~~~~~l~~~~~~~~-~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~~~~iRi~~~~~ 405 (439)
T 3dxv_A 329 GRLLRDGLSELAKRHP-LIGDIRGRG-LACGMELVCDRQSREPARAETAKLIYRAY-QLGLVVYYVGMNGNVLEFTPPLT 405 (439)
T ss_dssp HHHHHHHHHHHHHHCT-TEEEEEEET-TEEEEEEEEETTTTEECHHHHHHHHHHHH-HHTEECEEESTTSCEEEECCCTT
T ss_pred HHHHHHHHHHHHHhCC-CeEEEEEEE-EEEEEEEecCccccCCCHHHHHHHHHHHH-HCCcEEeecCCCCCEEEEECCCC
Confidence 555555554431 11 123334444 4555533 1 2 2345554 5799999874 887532
Q ss_pred CCCCcHHHHHHHHHHHHHhhh
Q 013839 404 VTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 404 ~~~e~i~~~~~~l~~~l~~~~ 424 (435)
.+++++++++++|+++++++.
T Consensus 406 ~t~e~i~~~l~~l~~~l~~~~ 426 (439)
T 3dxv_A 406 ITETDIHKALDLLDRAFSELS 426 (439)
T ss_dssp CCHHHHHHHHHHHHHHHHTGG
T ss_pred CCHHHHHHHHHHHHHHHHHHh
Confidence 388999999999999998763
No 129
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*
Probab=99.95 E-value=9e-27 Score=228.94 Aligned_cols=326 Identities=14% Similarity=0.061 Sum_probs=212.4
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCC--CCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCC
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEF--LESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALS 125 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~g 125 (435)
++...+||+.|...+.-|+ .++.+++.+.+++..... ..| +.....++++.+++++ + .+++. +++|
T Consensus 55 ~g~~~lD~~~~~~~~~lG~-~~p~v~~ai~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~-g-------~~~v~--~~~g 122 (420)
T 2pb2_A 55 QGKEYIDFAGGIAVTALGH-CHPALVEALKSQGETLWHTSNVF-TNEPALRLGRKLIDAT-F-------AERVL--FMNS 122 (420)
T ss_dssp TCCEEEESSHHHHTCTTCB-TCHHHHHHHHHHHTTCCCCCTTS-CCHHHHHHHHHHHHHS-S-------CSEEE--EESS
T ss_pred CCCEEEEccccccccccCC-CCHHHHHHHHHHHHhcccccCcc-CCHHHHHHHHHHHhhC-C-------CCeEE--EeCC
Confidence 5678899998853122222 234444545555542211 113 2233456666666654 2 24677 8999
Q ss_pred chhHHHHHHHHHHHhC-------CC-CEEEEcCCCChhhHH-HHhhCCCC------------eeeeeecCCCCCCcChHh
Q 013839 126 GTGACRLFAEFQRRFH-------PE-SHIYFPDPTWSNHHN-IWRDAQIP------------ERTYHYYDPDSKSLDFAA 184 (435)
Q Consensus 126 g~~a~~~~~~~~~~~~-------~g-d~Vlv~~p~y~~~~~-~~~~~g~~------------~~~v~~~~~~~~~~d~e~ 184 (435)
|++|+.++. ..+.. +| ++|++++|+|.++.. .+...|.+ +..++. .|+++
T Consensus 123 gteA~~~al--~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~-------~d~~~ 193 (420)
T 2pb2_A 123 GTEANETAF--KLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPF-------NDLHA 193 (420)
T ss_dssp HHHHHHHHH--HHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEECT-------TCHHH
T ss_pred HHHHHHHHH--HHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccCCCCCCCeEEecC-------CCHHH
Confidence 999999984 33332 67 599999999977643 34444543 222221 38999
Q ss_pred HHHHhhcCCCCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEE
Q 013839 185 LMDDIKNAPDSSFFLLHPSAHNPTGV-DPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIG 263 (435)
Q Consensus 185 l~~~i~~~~~~~~~v~~~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i 263 (435)
|++++. +++++|++++++||+|. .++.+++++|.++|++||+++|+||+|.++.+.+. ......+ +...+++
T Consensus 194 le~~i~---~~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~---~~~~~~~-~~~~dii 266 (420)
T 2pb2_A 194 VKAVMD---DHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGD---LFAYMHY-GVTPDIL 266 (420)
T ss_dssp HHHHCC---TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SSHHHHH-TCCCSEE
T ss_pred HHHHhc---cCceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCc---HHHHHhc-CCCCCeE
Confidence 999987 57899999889998885 58999999999999999999999999988776531 1122222 2223333
Q ss_pred EEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Q 013839 264 CAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQ 343 (435)
Q Consensus 264 ~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~ 343 (435)
||||.++ +|+|+||+++ +++ +++.+.......+.+.+.+++.++.++|+... + +...++++
T Consensus 267 ---t~sK~l~-~G~~iG~~~~---~~~----l~~~l~~~~~~~t~~~~~~~~aa~~a~L~~~~------~--~~~~~~~~ 327 (420)
T 2pb2_A 267 ---TSAKALG-GGFPVSAMLT---TQE----IASAFHVGSHGSTYGGNPLACAVAGAAFDIIN------T--PEVLQGIH 327 (420)
T ss_dssp ---EECGGGG-TTSCCEEEEE---CHH----HHTTCC----CCEECCCHHHHHHHHHHHHHHS------S--HHHHHHHH
T ss_pred ---Eeccccc-CCCceEEEEE---hHH----HHHhhcCCCcCcccCcCHHHHHHHHHHHHHHH------h--ccHHHHHH
Confidence 7899999 8999999974 777 66655543334456778888888877775321 1 34556677
Q ss_pred HHHHHHHHHHHhh--CCCCCccccccCcceeEecCC------CHHHH-HHHhhhccEEEeCCC----cEEec-cCCCCcH
Q 013839 344 RKRTTLRQNLEKL--GSSLNWEHITNQLGMFCFSGL------TPYQV-DRLAKEFHIYMTQDG----RISMA-GVTTGNV 409 (435)
Q Consensus 344 ~~~~~l~~~l~~~--~~~~~~~~~~~~~g~~~~~~~------~~~~~-~~ll~~~gI~i~pgg----Ris~~-~~~~e~i 409 (435)
++++++.+.|+++ +.+ .+....+. |.|+++.+ +.+.+ +.+ .++||.+.|++ ||++. ..+++++
T Consensus 328 ~~~~~l~~~L~~~~~~~~-~~~~~~~~-g~~~~v~~~~~~~~~~~~l~~~l-~~~Gi~v~~~~~~~iRl~~~~~~t~eei 404 (420)
T 2pb2_A 328 TKRQQFVQHLQAIDEQFD-IFSDIRGM-GLLIGAELKPKYKGRARDFLYAG-AEAGVMVLNAGADVMRFAPSLVVEEADI 404 (420)
T ss_dssp HHHHHHHHHHHHHHHHHC-CEEEEEEE-TTEEEEEECGGGTTCHHHHHHHH-HHTTEECEESSTTEEEECCCTTCCHHHH
T ss_pred HHHHHHHHHHHHHHhcCC-CeEEEEec-ceEEEEEECCCchHHHHHHHHHH-HHCCCEEEeCCCCEEEEECCCCCCHHHH
Confidence 7777777777665 221 12223344 44555533 23444 555 45899999874 88853 3489999
Q ss_pred HHHHHHHHHHHHhh
Q 013839 410 NYLANAIHEVTRSE 423 (435)
Q Consensus 410 ~~~~~~l~~~l~~~ 423 (435)
++++++|++++++.
T Consensus 405 ~~~~~~l~~~l~~~ 418 (420)
T 2pb2_A 405 HEGMQRFAQAVGKV 418 (420)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988653
No 130
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}
Probab=99.95 E-value=1.6e-26 Score=226.10 Aligned_cols=335 Identities=15% Similarity=0.108 Sum_probs=218.4
Q ss_pred hhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCc---ccHH--HHH-----HHHHhHc
Q 013839 37 INGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISAS---VSTK--MVE-----ESVKLVY 106 (435)
Q Consensus 37 ~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~---g~~~--lr~-----~ia~~l~ 106 (435)
++..+.+... ...+.|+|..|+. +.++.+.+.+.+.+.......|+... |.+. +++ .+++++
T Consensus 11 i~~~~~~~~~-~~~~~i~~~~~~~------~~~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~- 82 (407)
T 2dkj_A 11 LFELIALEEK-RQREGLELIASEN------FVSKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALF- 82 (407)
T ss_dssp HHHHHHHHHH-HHHTSEECCTTCC------CCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHH-HhhcceeeccCCC------CCCHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHh-
Confidence 3444444332 2257899999983 22444444433443322234465543 5543 444 555665
Q ss_pred CCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhH---HHHhhCCCCeeeeeec-CCCCCCcCh
Q 013839 107 GKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHH---NIWRDAQIPERTYHYY-DPDSKSLDF 182 (435)
Q Consensus 107 ~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~---~~~~~~g~~~~~v~~~-~~~~~~~d~ 182 (435)
+.. ++++. +.+|++|+.++ +..++.+||+|++++|+|..+. ..++..|.++..++.. +++++.+|+
T Consensus 83 g~~-----~~~i~---~~sGt~a~~~~--~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~ 152 (407)
T 2dkj_A 83 GAA-----WANVQ---PHSGSQANMAV--YMALMEPGDTLMGMDLAAGGHLTHGSRVNFSGKLYKVVSYGVRPDTELIDL 152 (407)
T ss_dssp TCS-----EEECC---CSSHHHHHHHH--HHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECCCTTTSSCCH
T ss_pred CCC-----cceEE---ecchHHHHHHH--HHHhcCCCCEEEEecccccCccchHHHHHhcCceEEEEecCCCcccCccCH
Confidence 332 23344 45566788888 6666789999999999998873 4444555543444431 234678999
Q ss_pred HhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCC-ccCCCCcccHHHHHHhhhcCCe
Q 013839 183 AALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQG-FASGDLDKDAQAIRIFLEDEHL 261 (435)
Q Consensus 183 e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~-~~~~~~~~~~~~~~~~~~~~~~ 261 (435)
+++++.+++ .+++++++++|+|| ...+ +++|.++|++||+++|+||+|.. +.+.+.... . + ...
T Consensus 153 ~~l~~~l~~--~~~~~v~~~~p~~~--~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~--~---~---~~~ 217 (407)
T 2dkj_A 153 EEVRRLALE--HRPKVIVAGASAYP--RFWD---FKAFREIADEVGAYLVVDMAHFAGLVAAGLHPN--P---L---PYA 217 (407)
T ss_dssp HHHHHHHHH--HCCSEEEECCSSCC--SCCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCC--C---T---TTC
T ss_pred HHHHHHHhh--cCCeEEEEeccccC--CCCC---HHHHHHHHHHcCCEEEEEccccccccccCccCC--c---c---ccc
Confidence 999999973 25678888999998 3343 78999999999999999999876 443321100 0 1 125
Q ss_pred EEEEecccccccccCCcccEEEEEecC-hhHHHHHHHHHHHHhhcc-ccCCChhHHHHHHHHhCChhhHHHHHHHHHHHH
Q 013839 262 IGCAQSYAKSMGLYGHRVGCLSILCVD-SKQAAAIRSQIQQIARAM-YGSPPVHGILLVATILSDPNLKSLWIDEVKIMA 339 (435)
Q Consensus 262 ~i~~~s~SK~~g~~G~RvG~~~~~~~~-~~~~~~~~~~l~~~~~~~-~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~ 339 (435)
+++++|+||. ++|+|+||+++ + ++ +++.+....... ..+++.....++..++.... .+++++.+
T Consensus 218 di~~~s~sK~--l~g~~~G~~~~---~~~~----~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~-----~~~~~~~~ 283 (407)
T 2dkj_A 218 HVVTSTTHKT--LRGPRGGLILS---NDPE----LGKRIDKLIFPGIQGGPLEHVIAGKAVAFFEAL-----QPEFKEYS 283 (407)
T ss_dssp SEEEEESSGG--GCCCSCEEEEE---SCHH----HHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHH-----SHHHHHHH
T ss_pred cEEEEecccc--CCCCCceEEEE---CCHH----HHHHHHhhhcccccCCCcHHHHHHHHHHHHHHH-----HhhHHHHH
Confidence 7889999995 46899999964 6 77 777776654332 23333333334445554310 15567888
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCccccc-cCcceeEecCC-----CHHHHHHHhhhccEEEeCC------------C--cE
Q 013839 340 DRIQRKRTTLRQNLEKLGSSLNWEHIT-NQLGMFCFSGL-----TPYQVDRLAKEFHIYMTQD------------G--RI 399 (435)
Q Consensus 340 ~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~g~~~~~~~-----~~~~~~~ll~~~gI~i~pg------------g--Ri 399 (435)
++++++++++.+.|+++| +.+.. +..+.++|+.+ +.+.+.+.|.++||.+.++ + |+
T Consensus 284 ~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRi 359 (407)
T 2dkj_A 284 RLVVENAKRLAEELARRG----YRIVTGGTDNHLFLVDLRPKGLTGKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIRI 359 (407)
T ss_dssp HHHHHHHHHHHHHHHHTT----CEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEE
T ss_pred HHHHHHHHHHHHHHHhCC----ceeecCCCCceEEEEECcccCCCHHHHHHHHHHcCceecCCcCccccccccCCCceee
Confidence 899999999999999886 34443 34667777744 4555655557799999874 1 99
Q ss_pred Eecc-----CCCCcHHHHHHHHHHHHHh
Q 013839 400 SMAG-----VTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 400 s~~~-----~~~e~i~~~~~~l~~~l~~ 422 (435)
+++. .+++++++++++|++++++
T Consensus 360 s~~~~~~~~~~~~~i~~~~~~l~~~~~~ 387 (407)
T 2dkj_A 360 GTPAITTRGFTPEEMPLVAELIDRALLE 387 (407)
T ss_dssp ECHHHHHTTCCGGGHHHHHHHHHHHHHH
T ss_pred ecccccccCCCHHHHHHHHHHHHHHHhc
Confidence 9852 5899999999999999876
No 131
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Probab=99.95 E-value=4e-26 Score=227.49 Aligned_cols=338 Identities=13% Similarity=0.088 Sum_probs=218.4
Q ss_pred CCCCeeeeeccee-cCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCc
Q 013839 48 PSPYKINLGVGAY-RDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSG 126 (435)
Q Consensus 48 ~~~~~i~l~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg 126 (435)
.+.++++|+.|.+ .|......++.+.+.+...+..+ ...|.+..+..+|++++++++. . +++. +|+||
T Consensus 32 ~g~~~~~~~~g~~ylD~~~~~~~~~v~~a~~~~~~~~-~~~y~~~~~~~~l~~~la~~~~-~-------~~v~--~t~gg 100 (467)
T 1ax4_A 32 AGYNPFLLPSSAVYIDLLTDSGTNAMSDHQWAAMITG-DEAYAGSRNYYDLKDKAKELFN-Y-------DYII--PAHQG 100 (467)
T ss_dssp TTSCGGGSCGGGCSEECSCSSSCCCEEHHHHHHHHTC-CCCSSSCHHHHHHHHHHHHHHC-C-------CEEE--EESSH
T ss_pred cCcCcccCCCCceeeecccCcCCHHHHHHHHHHHhhc-ccccccCccHHHHHHHHHHHcC-C-------CcEE--EcCCc
Confidence 4566777887763 23211111223333333444333 3458888899999999999983 2 2666 89999
Q ss_pred hhHHHHHHHHHHHhC----CCCE---EEEcCCCChhhHHHHhhCCCCeeeeeecC---C-----CCCCcChHhHHHHhhc
Q 013839 127 TGACRLFAEFQRRFH----PESH---IYFPDPTWSNHHNIWRDAQIPERTYHYYD---P-----DSKSLDFAALMDDIKN 191 (435)
Q Consensus 127 ~~a~~~~~~~~~~~~----~gd~---Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~---~-----~~~~~d~e~l~~~i~~ 191 (435)
++|+.++ +..++. +||+ |+++.+.|..+...+...|++++.++... . .++.+|+++|++++++
T Consensus 101 t~A~~~a--l~~~~~~~~~~Gd~~~~viv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~ 178 (467)
T 1ax4_A 101 RGAENIL--FPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQ 178 (467)
T ss_dssp HHHHHHH--HHHHHHHHHHTTCCSSCEEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHH
T ss_pred HHHHHHH--HHHHHHhhccCCCccceEEEeccccchhhHHHhccCCceecccccccccccccCCcccccCHHHHHHHHHh
Confidence 9999988 555666 9998 99987777887888888898887665421 1 1357899999999974
Q ss_pred CC-CCcEEEEeCCCCCCC-CCCCCHHHHHHHHHHHHhcCceeeeeccCCC---c-------cCCCCcccHHHHH-Hhhhc
Q 013839 192 AP-DSSFFLLHPSAHNPT-GVDPTEEQWREISYQFKVKGHFPFFDMAYQG---F-------ASGDLDKDAQAIR-IFLED 258 (435)
Q Consensus 192 ~~-~~~~~v~~~~p~NPt-G~~~~~~~l~~i~~~~~~~~~~vi~Deay~~---~-------~~~~~~~~~~~~~-~~~~~ 258 (435)
.. +++++|++++||||| |.+++.+++++|.++|++||+++|+|+++.. + .+.+. +...+. .....
T Consensus 179 ~~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 256 (467)
T 1ax4_A 179 HGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNA--TIKEVIFDMYKY 256 (467)
T ss_dssp HCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTC--CHHHHHHHHGGG
T ss_pred cCCCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCC--chhhhhhhhccc
Confidence 21 268999999999999 8999999999999999999999999998432 0 22221 122221 00011
Q ss_pred CCeEEEEecccccccccCCcc-cEEEEEecCh-hHHHHHHHHHHHHhhc-----cccCCChhHHHHHHHHhCChhhHHHH
Q 013839 259 EHLIGCAQSYAKSMGLYGHRV-GCLSILCVDS-KQAAAIRSQIQQIARA-----MYGSPPVHGILLVATILSDPNLKSLW 331 (435)
Q Consensus 259 ~~~~i~~~s~SK~~g~~G~Rv-G~~~~~~~~~-~~~~~~~~~l~~~~~~-----~~~~~~~~~q~~~~~~l~~~~l~~~~ 331 (435)
.+ +++.|+||.+|++ + ||++ ++++ + +++.+...... .....+...+.++...+....
T Consensus 257 ~d--~~~~s~sK~~g~~---~Gg~~~--~~d~~~----l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~----- 320 (467)
T 1ax4_A 257 AD--ALTMSAKKDPLLN---IGGLVA--IRDNEE----IFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGT----- 320 (467)
T ss_dssp CS--EEEEETTSTTCCS---SCEEEE--ESSCHH----HHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTT-----
T ss_pred cc--eEEEeccccCCCC---cceEEE--eCCHHH----HHHHHHhhccccccccccCCccchHHHHHHHHHHHhh-----
Confidence 22 4568999999865 3 5553 4336 7 66555543321 111223332332322332110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecC-------CC-----HH-HHHHHhhhccEEEeC---
Q 013839 332 IDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSG-------LT-----PY-QVDRLAKEFHIYMTQ--- 395 (435)
Q Consensus 332 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~-------~~-----~~-~~~~ll~~~gI~i~p--- 395 (435)
+ +...++..++++.+.+.|++.+ +.+..+.+|+++|++ +. .+ ++..+++++||.+.|
T Consensus 321 -~--~~~~~~~~~~~~~l~~~L~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~~g~ 393 (467)
T 1ax4_A 321 -E--EEYLHYRIGQVKYLGDRLREAG----IPIQYPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGS 393 (467)
T ss_dssp -C--HHHHHHHHHHHHHHHHHHHHTT----CCBCSSCCSSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESH
T ss_pred -h--hhHHHHHHHHHHHHHHHHHhCC----CCcccCCCceEEEEehhhhccccccCCCCHHHHHHHHHHhcCceeeecCc
Confidence 0 1112223355677888887754 445567888888876 32 23 345554788999987
Q ss_pred ---------C-------C--cEEecc--CCCCcHHHHHHHHHHHHHhh
Q 013839 396 ---------D-------G--RISMAG--VTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 396 ---------g-------g--Ris~~~--~~~e~i~~~~~~l~~~l~~~ 423 (435)
| + ||++.. .+++++++++++|++++++.
T Consensus 394 ~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~~ 441 (467)
T 1ax4_A 394 FLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEKF 441 (467)
T ss_dssp HHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHHH
T ss_pred cccccccccccccccccceEEEecccccCCHHHHHHHHHHHHHHHHhh
Confidence 2 3 888862 47899999999999988764
No 132
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*
Probab=99.95 E-value=2.4e-26 Score=224.48 Aligned_cols=315 Identities=11% Similarity=0.020 Sum_probs=214.5
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhH
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGA 129 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a 129 (435)
...|||+.|.+ +.++.+.+.+.+.+.. ..|.+..+..++++++++++ +.. +++ ++.+|++|
T Consensus 30 ~~~id~~~~~~------~~~~~v~~a~~~~~~~---~~y~~~~~~~~l~~~la~~~-~~~-------~~v--~~~~Gt~a 90 (399)
T 2oga_A 30 VPFLDLKAAYE------ELRAETDAAIARVLDS---GRYLLGPELEGFEAEFAAYC-ETD-------HAV--GVNSGMDA 90 (399)
T ss_dssp BCSCCHHHHHH------HTHHHHHHHHHHHHHH---TCCSSSHHHHHHHHHHHHHT-TSS-------EEE--EESCHHHH
T ss_pred CcccccCcCCC------CCCHHHHHHHHHHHhc---CCCCCchhHHHHHHHHHHHH-CCC-------eEE--EecCHHHH
Confidence 47889999986 2223333333333322 24767788899999999998 321 334 68888999
Q ss_pred HHHHHHHHHH-hCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCC
Q 013839 130 CRLFAEFQRR-FHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPT 208 (435)
Q Consensus 130 ~~~~~~~~~~-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPt 208 (435)
+.++ +..+ +.+||+|+++.|+|..+...++..|++++.++. +++++.+|+++++++++ +++++++ |+|||
T Consensus 91 ~~~~--l~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~d~~~l~~~i~---~~~~~v~---~~n~t 161 (399)
T 2oga_A 91 LQLA--LRGLGIGPGDEVIVPSHTYIASWLAVSATGATPVPVEP-HEDHPTLDPLLVEKAIT---PRTRALL---PVHLY 161 (399)
T ss_dssp HHHH--HHHTTCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECB-CSSSSSBCHHHHHHHCC---TTEEEEC---CBCGG
T ss_pred HHHH--HHHhCCCCcCEEEECCCccHHHHHHHHHCCCEEEEEec-CCCCCCcCHHHHHHhcC---CCCeEEE---EeCCc
Confidence 9888 6666 789999999999999999999999999999988 34467899999999997 5677776 47899
Q ss_pred CCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecc--cccccccCCcccEEEEEe
Q 013839 209 GVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSY--AKSMGLYGHRVGCLSILC 286 (435)
Q Consensus 209 G~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~--SK~~g~~G~RvG~~~~~~ 286 (435)
|...+ +++|.++|+++|+++|+|++|..+...+. .. +... .++++.|+ ||.+|.+| |+||++ +
T Consensus 162 G~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~-~~------~~~~--~di~~~S~~~sK~~~~~G-~~g~~~--~ 226 (399)
T 2oga_A 162 GHPAD---MDALRELADRHGLHIVEDAAQAHGARYRG-RR------IGAG--SSVAAFSFYPGKNLGCFG-DGGAVV--T 226 (399)
T ss_dssp GCCCC---HHHHHHHHHHHTCEECEECTTCTTCEETT-EE------TTCT--TCEEEEECCTTSSSCCSS-CCEEEE--E
T ss_pred CCccC---HHHHHHHHHHcCCEEEEECcccccCccCC-ee------cccc--cCEEEEeCCCCccCCcCC-ceEEEE--e
Confidence 99875 67999999999999999999975532111 10 1111 24788888 79999779 999986 4
Q ss_pred cChhHHHHHHHHHHHHhhcc------------ccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013839 287 VDSKQAAAIRSQIQQIARAM------------YGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLE 354 (435)
Q Consensus 287 ~~~~~~~~~~~~l~~~~~~~------------~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~ 354 (435)
.+++ +++.+....... ....+.+.+.++...+.. ++...++.+++++.+.+.|+
T Consensus 227 ~~~~----~~~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~----------~~~~~~~~~~~~~~l~~~L~ 292 (399)
T 2oga_A 227 GDPE----LAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAH----------LDSWNGRRSALAAEYLSGLA 292 (399)
T ss_dssp SCHH----HHHHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHT----------HHHHHHHHHHHHHHHHHHTT
T ss_pred CCHH----HHHHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHhc
Confidence 3477 666666543321 113455555555444432 22344455566777788887
Q ss_pred hhCCCCCcccc-ccCcceeEec-----CCCHHHHHHHhhhccEEEeCC-----------------------------C--
Q 013839 355 KLGSSLNWEHI-TNQLGMFCFS-----GLTPYQVDRLAKEFHIYMTQD-----------------------------G-- 397 (435)
Q Consensus 355 ~~~~~~~~~~~-~~~~g~~~~~-----~~~~~~~~~ll~~~gI~i~pg-----------------------------g-- 397 (435)
+++. +.+. .+..+.++|. ..+.+.+.+.|.++||.+.++ +
T Consensus 293 ~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l 369 (399)
T 2oga_A 293 GLPG---IGLPVTAPDTDPVWHLFTVRTERRDELRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVL 369 (399)
T ss_dssp TCTT---CBCCCCCTTEECCCSSEEEECSSHHHHHHHHHHTTBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHHHHHHEE
T ss_pred cCCC---ccccCCCCCCcceeEEEEEECCCHHHHHHHHHHCCCceecCCCCccccchhhcccCCCCCCChhHHHHHhCEE
Confidence 6521 2222 2334444442 235555544556789998752 2
Q ss_pred cEEec-cCCCCcHHHHHHHHHHHHHhhh
Q 013839 398 RISMA-GVTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 398 Ris~~-~~~~e~i~~~~~~l~~~l~~~~ 424 (435)
||++. ..+++++++++++|+++++++.
T Consensus 370 Ri~~~~~~t~edi~~~~~~l~~~~~~l~ 397 (399)
T 2oga_A 370 SLPIGPHLERPQALRVIDAVREWAERVD 397 (399)
T ss_dssp EECCSTTCCHHHHHHHHHHHHHHHHSCC
T ss_pred EccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 66654 2378999999999999887643
No 133
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*
Probab=99.95 E-value=2.3e-26 Score=226.73 Aligned_cols=340 Identities=10% Similarity=-0.008 Sum_probs=215.5
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCC---CCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecC
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSE---FLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQAL 124 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~ 124 (435)
++...+|++.|.+...-++ .++++++++.+++.... ...|+. ....++++.+++++. .. +++|. +++
T Consensus 41 ~g~~ylD~~~~~~~~~lg~-~~p~v~~a~~~~~~~~~~~~~~~~~~-~~~~~l~~~la~~~~-~~-----~~~v~--~~~ 110 (429)
T 1s0a_A 41 DGRRLVDGMSSWWAAIHGY-NHPQLNAAMKSQIDAMSHVMFGGITH-APAIELCRKLVAMTP-QP-----LECVF--LAD 110 (429)
T ss_dssp TSCEEEESSTTTTTCTTCB-SCHHHHHHHHHHHHHCSCCCCSSEEC-HHHHHHHHHHHHHSC-TT-----CCEEE--EES
T ss_pred CCCEEEEcCccHhhccCCC-CCHHHHHHHHHHHHhcccccccccCC-HHHHHHHHHHHHhCC-CC-----CCEEE--EeC
Confidence 4567889988874222221 23444444444443211 113433 334678888888762 21 56888 999
Q ss_pred CchhHHHHHHHHH-HHhC----CCCEEEEcCCCChhhHHHHh-hCC-------------CCeeeeeecC---CCCC-CcC
Q 013839 125 SGTGACRLFAEFQ-RRFH----PESHIYFPDPTWSNHHNIWR-DAQ-------------IPERTYHYYD---PDSK-SLD 181 (435)
Q Consensus 125 gg~~a~~~~~~~~-~~~~----~gd~Vlv~~p~y~~~~~~~~-~~g-------------~~~~~v~~~~---~~~~-~~d 181 (435)
||++|+.++.... .... |||+|++.+|+|.++..... ..| ..+..++... .+.+ .+|
T Consensus 111 ggtea~~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 190 (429)
T 1s0a_A 111 SGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERD 190 (429)
T ss_dssp SHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGG
T ss_pred CHHHHHHHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchHHH
Confidence 9999999885322 1222 68999999999987644222 211 1233444311 1123 589
Q ss_pred hHhHHHHhhcCCCCcEEEEeCCC-CCCCCC-CCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcC
Q 013839 182 FAALMDDIKNAPDSSFFLLHPSA-HNPTGV-DPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDE 259 (435)
Q Consensus 182 ~e~l~~~i~~~~~~~~~v~~~~p-~NPtG~-~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~ 259 (435)
+++|++++++.++++++++++.. +||||. ..+.+++++|.++|++||+++|+||+|.+++..+. ...... .+..
T Consensus 191 ~~~l~~~l~~~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~---~~~~~~-~~~~ 266 (429)
T 1s0a_A 191 MVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGK---LFACEH-AEIA 266 (429)
T ss_dssp GHHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGGGG-GTCC
T ss_pred HHHHHHHHHhCCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccch---HHHhhh-cCCC
Confidence 99999998743235666666555 799996 55788899999999999999999999988765431 111111 1222
Q ss_pred CeEEEEecccccccccC-CcccEEEEEecChhHHHHHHHHHHHHh-----hccccCCChhHHHHHHHHhCChhhHHHHHH
Q 013839 260 HLIGCAQSYAKSMGLYG-HRVGCLSILCVDSKQAAAIRSQIQQIA-----RAMYGSPPVHGILLVATILSDPNLKSLWID 333 (435)
Q Consensus 260 ~~~i~~~s~SK~~g~~G-~RvG~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~ 333 (435)
.++ .|+||.++ +| +|+||+++ +++ +++.+.... ...+.+.+.+++.++.++++... +
T Consensus 267 ~d~---~t~sK~l~-~G~~~iG~~~~---~~~----~~~~l~~~~~~~~~~~~t~~~n~~~~~a~~aal~~~~------~ 329 (429)
T 1s0a_A 267 PDI---LCLGKALT-GGTMTLSATLT---TRE----VAETISNGEAGCFMHGPTFMGNPLACAAANASLAILE------S 329 (429)
T ss_dssp CSE---EEECGGGG-TSSSCCEEEEE---CHH----HHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHH------T
T ss_pred CCE---EEeccccc-CCCccceEEEe---CHH----HHHHhhcCCCcccccCCCCCCCHHHHHHHHHHHHHHH------h
Confidence 233 37899998 68 99999974 777 777776521 22345678888888877775311 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhC-CCCCccccccCcceeEecCC----CHHHH-HHHhhhccEEEeCCC---cEEec-c
Q 013839 334 EVKIMADRIQRKRTTLRQNLEKLG-SSLNWEHITNQLGMFCFSGL----TPYQV-DRLAKEFHIYMTQDG---RISMA-G 403 (435)
Q Consensus 334 ~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~~~g~~~~~~~----~~~~~-~~ll~~~gI~i~pgg---Ris~~-~ 403 (435)
....++++++++.+.+.|++++ .+ .+....+. |.|+|+.+ +.+.+ ..+ .++||.+.+.+ ||+++ .
T Consensus 330 --~~~~~~~~~~~~~l~~~L~~l~~~~-~~~~~~~~-g~~~~~~~~~~~~~~~l~~~l-~~~Gi~v~~~~~~iRis~~~~ 404 (429)
T 1s0a_A 330 --GDWQQQVADIEVQLREQLAPARDAE-MVADVRVL-GAIGVVETTHPVNMAALQKFF-VEQGVWIRPFGKLIYLMPPYI 404 (429)
T ss_dssp --CHHHHHHHHHHHHHHHHHGGGGGCT-TEEEEEEE-TTEEEEEESSCBCHHHHHHHH-HHTTEECCCBTTEEEECCCTT
T ss_pred --CCHHHHHHHHHHHHHHHHHHHhcCC-CEEEEEEe-eEEEEEEECCcccHHHHHHHH-HHCCCEEeccCCEEEEECCCC
Confidence 2345667777888888887753 11 13333344 44666643 44444 555 46899999865 89854 3
Q ss_pred CCCCcHHHHHHHHHHHHHhh
Q 013839 404 VTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 404 ~~~e~i~~~~~~l~~~l~~~ 423 (435)
.+++++++++++|++++++.
T Consensus 405 ~t~e~i~~~~~~l~~~~~~~ 424 (429)
T 1s0a_A 405 ILPQQLQRLTAAVNRAVQDE 424 (429)
T ss_dssp CCHHHHHHHHHHHHHHTSSG
T ss_pred CCHHHHHHHHHHHHHHHHhh
Confidence 38899999999999887543
No 134
>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*
Probab=99.95 E-value=7.6e-26 Score=219.99 Aligned_cols=304 Identities=9% Similarity=-0.039 Sum_probs=204.2
Q ss_pred chHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHH-hCCCCEEEE
Q 013839 70 LQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRR-FHPESHIYF 148 (435)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~-~~~gd~Vlv 148 (435)
++..+.+.+.+..+ ...|.+..+..++++++++++. . ++.+. +.+|++|+.++ +.++ +.+||+|++
T Consensus 17 ~~~~~a~~~~l~~~-~~~~~~~~~~~~l~~~la~~~~-~------~~~i~---~~sGt~al~~~--l~~l~~~~gd~Vi~ 83 (388)
T 1b9h_A 17 DAERNGLVRALEQG-QWWRMGGDEVNSFEREFAAHHG-A------AHALA---VTNGTHALELA--LQVMGVGPGTEVIV 83 (388)
T ss_dssp HHHHHHHHHHHHTS-CCBTTTCSHHHHHHHHHHHHTT-C------SEEEE---ESCHHHHHHHH--HHHTTCCTTCEEEE
T ss_pred HHHHHHHHHHHHcC-CeeecCCHHHHHHHHHHHHHhC-C------CeEEE---eCCHHHHHHHH--HHHcCCCCcCEEEE
Confidence 44545555555443 3457777889999999999983 3 12444 45568999888 6666 789999999
Q ss_pred cCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcC
Q 013839 149 PDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKG 228 (435)
Q Consensus 149 ~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~ 228 (435)
+.|+|..+...++..|++++.+++ +++++.+|+++|+++++ +++++|+ |+||||.+.+ +++|.++|++||
T Consensus 84 ~~~~~~~~~~~~~~~g~~~~~v~~-~~~~~~~d~~~l~~~i~---~~~~~v~---~~n~tG~~~~---l~~i~~la~~~~ 153 (388)
T 1b9h_A 84 PAFTFISSSQAAQRLGAVTVPVDV-DAATYNLDPEAVAAAVT---PRTKVIM---PVHMAGLMAD---MDALAKISADTG 153 (388)
T ss_dssp ESSSCTHHHHHHHHTTCEEEEECB-CTTTCCBCHHHHHHHCC---TTEEEEC---CBCGGGCCCC---HHHHHHHHHHHT
T ss_pred CCCccHHHHHHHHHcCCEEEEEec-CCCcCCCCHHHHHHhcC---cCceEEE---EeCCccCcCC---HHHHHHHHHHcC
Confidence 999999999999999999999998 34468899999999997 5677766 8999999865 568999999999
Q ss_pred ceeeeeccCCC-ccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHH--HHHHHHHhhc
Q 013839 229 HFPFFDMAYQG-FASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAI--RSQIQQIARA 305 (435)
Q Consensus 229 ~~vi~Deay~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~--~~~l~~~~~~ 305 (435)
+++|+|++|.. ..+.+. + + ... .++.+.||||..+++|.|+||++ ++++. + ++.+......
T Consensus 154 ~~li~D~a~~~g~~~~~~--~---~---~~~--~~i~~~S~s~~K~l~g~~~G~~~--~~~~~----~~~~~~~~~~~~~ 217 (388)
T 1b9h_A 154 VPLLQDAAHAHGARWQGK--R---V---GEL--DSIATFSFQNGKLMTAGEGGAVV--FPDGE----TEKYETAFLRHSC 217 (388)
T ss_dssp CCBCEECTTCTTCEETTE--E---G---GGS--SSCEEEECCTTSSSCSSSCEEEE--ECTTC----HHHHHHHHHHTBT
T ss_pred CEEEEecchhcCCccCCe--e---c---ccc--cceEEEEccCCCcccCCCeEEEE--ECCHH----HHHHHHHHHHHhC
Confidence 99999999875 333221 1 1 111 16788999977767778999996 43334 3 3444332211
Q ss_pred c-----------ccCCC-hhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccc------c
Q 013839 306 M-----------YGSPP-VHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHIT------N 367 (435)
Q Consensus 306 ~-----------~~~~~-~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~------~ 367 (435)
. ..+.+ .+.+..++.++.. .+++++.+++++++++++.+.|++++. +.... +
T Consensus 218 ~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~-------~~~l~~~~~~~~~~~~~l~~~L~~~~~---~~~~~~~~~~~~ 287 (388)
T 1b9h_A 218 GRPRDDRRYFHKIAGSNMRLNEFSASVLRAQ-------LARLDEQIAVRDERWTLLSRLLGAIDG---VVPQGGDVRADR 287 (388)
T ss_dssp TCCTTCSSCCCCSCCCBCBCBHHHHHHHHHH-------HTTHHHHHHHHHHHHHHHHHHHHTSTT---CEECCCCTTCCB
T ss_pred CCCccCccceeecccccCCcCHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhccCCC---ccccCCCcCCCc
Confidence 0 00111 1112222222211 134556777888889999999988631 33333 3
Q ss_pred CcceeEecCCC------HHHHHHHhhhccEEEeCCC-------------------------------------cEEec-c
Q 013839 368 QLGMFCFSGLT------PYQVDRLAKEFHIYMTQDG-------------------------------------RISMA-G 403 (435)
Q Consensus 368 ~~g~~~~~~~~------~~~~~~ll~~~gI~i~pgg-------------------------------------Ris~~-~ 403 (435)
.+++++|+.+. .+.+.+.|.++||.+.++. ||++. .
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~ 367 (388)
T 1b9h_A 288 NSHYMAMFRIPGLTEERRNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVL 367 (388)
T ss_dssp CCCSEEEEECTTCCHHHHHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGG
T ss_pred cceEEEEEEeCCcCcccHHHHHHHHHHCCCCcccccCccccChHhHhcCCCcccccccccCCHHHHHHHhCeEEecCCCC
Confidence 45678887552 3344444456899997430 45543 3
Q ss_pred C-CCCcHHHHHHHHHHHHHh
Q 013839 404 V-TTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 404 ~-~~e~i~~~~~~l~~~l~~ 422 (435)
. ++++++++++.|++++++
T Consensus 368 ~~t~edi~~~~~~l~~~~~~ 387 (388)
T 1b9h_A 368 LAGEPELHATAEIIADAVAR 387 (388)
T ss_dssp GSCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhh
Confidence 4 678999999999988753
No 135
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.95 E-value=3.5e-26 Score=221.81 Aligned_cols=290 Identities=13% Similarity=0.101 Sum_probs=202.0
Q ss_pred ccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHh---CCCCEEEEc-CCCChhhH-HHHhhCCCCe
Q 013839 93 VSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRF---HPESHIYFP-DPTWSNHH-NIWRDAQIPE 167 (435)
Q Consensus 93 g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~---~~gd~Vlv~-~p~y~~~~-~~~~~~g~~~ 167 (435)
...++++.+++++.... ..++++++ +++||++|+.++ +..+. .+||+|+++ .|+|..+. ..++..|+++
T Consensus 39 ~~~~~~~~l~~~~~~~~--~~~~~~v~--~~~g~t~al~~~--~~~~~~~~~~gd~vlv~~~~~~~~~~~~~~~~~g~~~ 112 (385)
T 2bkw_A 39 IFQRVLKNTRAVFKSAA--ASKSQPFV--LAGSGTLGWDIF--ASNFILSKAPNKNVLVVSTGTFSDRFADCLRSYGAQV 112 (385)
T ss_dssp HHHHHHHHHHHHTTCCG--GGTCEEEE--EESCTTHHHHHH--HHHHSCTTCSCCEEEEECSSHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHhCCCC--CCCCceEE--EcCchHHHHHHH--HHHHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCce
Confidence 46678899999984321 12356777 899999999998 66666 899999888 55666553 6677889999
Q ss_pred eeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhc--CceeeeeccCCCccCCCC
Q 013839 168 RTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVK--GHFPFFDMAYQGFASGDL 245 (435)
Q Consensus 168 ~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~--~~~vi~Deay~~~~~~~~ 245 (435)
+.++.. ++++.+|+++|++++++ .+++++++++|+||||.+++ +++|.++|++| |+++|+|++|...... .
T Consensus 113 ~~v~~~-~~~~~~d~~~l~~~l~~--~~~~~v~~~~~~nptG~~~~---l~~i~~~~~~~~~~~~li~D~a~~~~~~~-~ 185 (385)
T 2bkw_A 113 DVVRPL-KIGESVPLELITEKLSQ--NSYGAVTVTHVDTSTAVLSD---LKAISQAIKQTSPETFFVVDAVCSIGCEE-F 185 (385)
T ss_dssp EEECCS-STTSCCCHHHHHHHHHH--SCCSEEEEESEETTTTEECC---HHHHHHHHHHHCTTSEEEEECTTTTTTSC-C
T ss_pred EEEecC-CCCCCCCHHHHHHHHhc--CCCCEEEEEccCCCcCeEcC---HHHHHHHHHhhCCCCEEEEECccccCCcc-c
Confidence 998862 34567999999999973 26788999999999999987 55999999999 9999999998632211 1
Q ss_pred cccHHHHHHhhhcCCeEEEEecccccc-cccCCcccEEEEEecChhHHHHHHH-HH------------------H----H
Q 013839 246 DKDAQAIRIFLEDEHLIGCAQSYAKSM-GLYGHRVGCLSILCVDSKQAAAIRS-QI------------------Q----Q 301 (435)
Q Consensus 246 ~~~~~~~~~~~~~~~~~i~~~s~SK~~-g~~G~RvG~~~~~~~~~~~~~~~~~-~l------------------~----~ 301 (435)
++ ...+.++++.|+||.+ |.+| +||+++ +++ +++ .+ . .
T Consensus 186 -----~~----~~~~~d~~~~s~~K~~~~~~G--~G~~~~---~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 247 (385)
T 2bkw_A 186 -----EF----DEWGVDFALTASQKAIGAPAG--LSISLC---SSR----FMDYALNDSKNGHVHGYFSSLRRWTPIMEN 247 (385)
T ss_dssp -----CT----TTTTCSEEEEESSSTTCCCSC--EEEEEE---CHH----HHHHHTCHHHHCCCSCSTTCHHHHHHHHHH
T ss_pred -----cc----cccCceEEEecCccccccCCc--ceEEEE---cHH----HHHHHHhhccCCCCCceeecHHHHhhHHHh
Confidence 11 1123568899999965 4566 489864 776 333 22 1 1
Q ss_pred Hhhc--c-ccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhCCCCCcccccc-----Cccee
Q 013839 302 IARA--M-YGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNL-EKLGSSLNWEHITN-----QLGMF 372 (435)
Q Consensus 302 ~~~~--~-~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~~~~~~~~~~-----~~g~~ 372 (435)
.... . ..+++...+.++..++.... ...+++.+++++++++++.+.| ++++ +.+..+ ..+.+
T Consensus 248 ~~~~~~~~~~~~~~~~~~a~~~al~~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~~g----~~~~~~~~~~~~~~~~ 318 (385)
T 2bkw_A 248 YEAGKGAYFATPPVQLINSLDVALKEIL-----EEGLHKRWDLHREMSDWFKDSLVNGLQ----LTSVSRYPSNMSAHGL 318 (385)
T ss_dssp HHTTCCCCSSCCCHHHHHHHHHHHHHHH-----HHCHHHHHHHHHHHHHHHHHHHHTTTC----CEESSCSSSTTBCSSC
T ss_pred hhccCCCCCCCCCHHHHHHHHHHHHHHH-----HccHHHHHHHHHHHHHHHHHHHHHhcC----ceecccCcccccCCce
Confidence 1110 0 13466666666666664321 1225677888999999999999 8765 344432 24567
Q ss_pred EecCCC-HHHHHHHhhhccEEEeCCC---------cEE-ec----cCCCCcHHHHHHHHHHHHHh
Q 013839 373 CFSGLT-PYQVDRLAKEFHIYMTQDG---------RIS-MA----GVTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 373 ~~~~~~-~~~~~~ll~~~gI~i~pgg---------Ris-~~----~~~~e~i~~~~~~l~~~l~~ 422 (435)
+|+.+. .+.+.+.|.++||.+.+|. ||+ ++ ..+++++++++++|++++++
T Consensus 319 ~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~~~iRis~~~~~~~~~~~e~i~~~~~~l~~~~~~ 383 (385)
T 2bkw_A 319 TAVYVADPPDVIAFLKSHGVVIAGGIHKDIGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQR 383 (385)
T ss_dssp EEEECSCHHHHHHHHHHTTEECBCCCCTTTGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTTC
T ss_pred EEEecCCHHHHHHHHHHCCeEEeCCCCcccCCCEEEEEccccccccCCHHHHHHHHHHHHHHHHh
Confidence 776553 4444334457899999861 999 65 24889999999999988754
No 136
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*
Probab=99.95 E-value=2.6e-26 Score=226.38 Aligned_cols=336 Identities=14% Similarity=0.046 Sum_probs=214.2
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCc
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSG 126 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg 126 (435)
.+++..+|+..|.+.+.-|. .++.+++.+.+++...... |.+.....+|++.+++++.+ ++++. +++||
T Consensus 50 ~~g~~ylD~~~~~~~~~lG~-~~p~v~~A~~~~~~~~~~~-~~~~~~~~~l~~~la~~~~~-------~~~v~--~~~~G 118 (429)
T 3k28_A 50 IDGNEYIDYVLSWGPLIHGH-ANDRVVEALKAVAERGTSF-GAPTEIENKLAKLVIERVPS-------IEIVR--MVNSG 118 (429)
T ss_dssp TTCCEEEESCGGGTTCTTCB-SCHHHHHHHHHHHHHCSCC-SSCCHHHHHHHHHHHHHSTT-------CSEEE--EESSH
T ss_pred CCCCEEEECCCChhhcccCC-CCHHHHHHHHHHHhhCcCc-CCCCHHHHHHHHHHHHhCCC-------CCEEE--EeCCh
Confidence 35688999999874232222 2444555555555433223 34556778899999998731 45777 99999
Q ss_pred hhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhh-CCCCeeeeeecCCCCCC------------cChHhHHHHhhcCC
Q 013839 127 TGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRD-AQIPERTYHYYDPDSKS------------LDFAALMDDIKNAP 193 (435)
Q Consensus 127 ~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~-~g~~~~~v~~~~~~~~~------------~d~e~l~~~i~~~~ 193 (435)
++|+..+..+.....++++|++.+|+|.++...... .|.....++........ -|+++|++++.+.+
T Consensus 119 sea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~ 198 (429)
T 3k28_A 119 TEATMSALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYNDLESVKYAFEQFG 198 (429)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEEETCCCCSCGGGCSSCCTTC-----CCCTTCCHHHHTTEEEEETTCHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCcCCCCCcccCceeecCCCCHHHHHHHHHhCC
Confidence 999999853332233678999999999766433322 22222211110011000 17899999887543
Q ss_pred CCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccc
Q 013839 194 DSSFFLLHPSAHNPTGVDP-TEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSM 272 (435)
Q Consensus 194 ~~~~~v~~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~ 272 (435)
+++++++++.++|++|... +++.+++|.++|++||+++|+||+|.+| ..+ .......+ +.... +.++||.+
T Consensus 199 ~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g---~~~~~~~~-~~~~d---i~t~sK~~ 270 (429)
T 3k28_A 199 DDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGF-RVA---YNCGQGYY-GVTPD---LTCLGKVI 270 (429)
T ss_dssp GGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT-TSS---TTHHHHHH-TCCCS---EEEECGGG
T ss_pred CCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccccc-ccC---cchHHHHh-CCCCc---eehhhhhh
Confidence 4567777766666777665 6788999999999999999999999888 443 12222222 22222 34799999
Q ss_pred cccCCcccEEEEEecChhHHHHHHHHHHHHh---hccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 013839 273 GLYGHRVGCLSILCVDSKQAAAIRSQIQQIA---RAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTL 349 (435)
Q Consensus 273 g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l 349 (435)
+ .|+|+||+++ +++ +++.+.... ...+.+.+.+++.++.++|+... ++..++++++++++
T Consensus 271 ~-~G~~iG~~~~---~~~----~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~---------~~~~~~~~~~~~~l 333 (429)
T 3k28_A 271 G-GGLPVGAYGG---KAE----IMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLT---------PESYVEFERKAEML 333 (429)
T ss_dssp G-TTSCCEEEEE---CHH----HHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTCC---------HHHHHHHHHHHHHH
T ss_pred c-CCCCeEEEEE---cHH----HHhhhccCCCccccCCCCCChHHHHHHHHHHHHHH---------HHHHHHHHHHHHHH
Confidence 8 5999999964 888 777665422 23356778888888888886532 34455566666666
Q ss_pred HHHHHhh----CCCCCccccccCcceeEecCC-------------C----HHHHHHHhhhccEEEeCCC----cEEeccC
Q 013839 350 RQNLEKL----GSSLNWEHITNQLGMFCFSGL-------------T----PYQVDRLAKEFHIYMTQDG----RISMAGV 404 (435)
Q Consensus 350 ~~~l~~~----~~~~~~~~~~~~~g~~~~~~~-------------~----~~~~~~ll~~~gI~i~pgg----Ris~~~~ 404 (435)
.+.|+++ +. +...++.+.++.|.-. + .++...+ .++||.+.|+| |+++..
T Consensus 334 ~~~L~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~~~~~r~~~~~- 408 (429)
T 3k28_A 334 EAGLRKAAEKHGI---PHHINRAGSMIGIFFTDEPVINYDAAKSSNLQFFAAYYREM-VEQGVFLPPSQFEGLFLSTVH- 408 (429)
T ss_dssp HHHHHHHHHHTTC---CCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHH-HHTTEECCSSTTSCBCCCTTC-
T ss_pred HHHHHHHHhhCCC---CEEEEeeccEEEEEEecCCcccccccccccHHHHHHHHHHH-HHCCeEEecCCCCCEEEECCC-
Confidence 6666543 32 2233444554443210 1 2333555 46899999975 887654
Q ss_pred CCCcHHHHHHHHHHHHHhh
Q 013839 405 TTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 405 ~~e~i~~~~~~l~~~l~~~ 423 (435)
+++++++++++|+++++++
T Consensus 409 t~e~i~~~l~~l~~~l~~~ 427 (429)
T 3k28_A 409 SDADIEATIAAAEIAMSKL 427 (429)
T ss_dssp CHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 8999999999999998764
No 137
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Probab=99.95 E-value=1.7e-26 Score=227.63 Aligned_cols=335 Identities=12% Similarity=0.012 Sum_probs=206.6
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCch
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~ 127 (435)
+++..+|+..|.+...-|+ .++.+++.+.+++.......| +.....++.+.+++++. . ++++. +++||+
T Consensus 50 ~g~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~-~~~~~~~la~~l~~~~~--~-----~~~v~--~~~ggs 118 (427)
T 3fq8_A 50 DGNRYIDYVGTWGPAICGH-AHPEVIEALKVAMEKGTSFGA-PCALENVLAEMVNDAVP--S-----IEMVR--FVNSGT 118 (427)
T ss_dssp TSCEEEESSGGGTTCTTCB-TCHHHHHHHHHHHTTCSCCSS-CCHHHHHHHHHHHHHST--T-----CSEEE--EESSHH
T ss_pred CCCEEEECCCchhhhccCC-CCHHHHHHHHHHHHhCCCcCC-CCHHHHHHHHHHHHhCC--C-----CCEEE--EeCCHH
Confidence 5678999999975332222 344555555556554322333 33334455555555542 1 46787 999999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCC-eeeeeecCCCCCC------------cChHhHHHHhhcCCC
Q 013839 128 GACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIP-ERTYHYYDPDSKS------------LDFAALMDDIKNAPD 194 (435)
Q Consensus 128 ~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~-~~~v~~~~~~~~~------------~d~e~l~~~i~~~~~ 194 (435)
+|+.++..+......+++|++.+|+|.++...+...+.. ...+......+.. -|+++|++++++.++
T Consensus 119 ea~~~al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~ 198 (427)
T 3fq8_A 119 EACMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYNDLEAVKALFAENPG 198 (427)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEETTCHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCCCCHHHHHHHHHhCCC
Confidence 999998543333345589999999997654333222111 1111100011000 189999999986545
Q ss_pred CcEEEEeCCCCCCCCCCCC-HHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEeccccccc
Q 013839 195 SSFFLLHPSAHNPTGVDPT-EEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMG 273 (435)
Q Consensus 195 ~~~~v~~~~p~NPtG~~~~-~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g 273 (435)
++++++++.++|++|...+ .+.+++|.++|++||+++|+||+|.++ ..+ .......+ +.... +.|+||.++
T Consensus 199 ~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g---~~~~~~~~-~~~~d---i~t~sK~~~ 270 (427)
T 3fq8_A 199 EIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGF-RIA---YGGVQEKF-GVTPD---LTTLGKIIG 270 (427)
T ss_dssp TEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT-TTB---TTHHHHHT-TCCCS---EEEECGGGG
T ss_pred CEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccccc-ccC---cchhhHhc-CCCCC---hhhhhhhhh
Confidence 7788888888888888775 555999999999999999999999988 432 11222222 22112 468999999
Q ss_pred ccCCcccEEEEEecChhHHHHHHHHHHHHh---hccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 013839 274 LYGHRVGCLSILCVDSKQAAAIRSQIQQIA---RAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLR 350 (435)
Q Consensus 274 ~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 350 (435)
+|+|+||+++ +++ +++.+.... ...+.+.+.+++.++.++|+... + +...++++++++.++
T Consensus 271 -~G~~~G~~~~---~~~----~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~------~--~~~~~~~~~~~~~~~ 334 (427)
T 3fq8_A 271 -GGLPVGAYGG---KRE----IMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLR------Q--PGTYEYLDQITKRLS 334 (427)
T ss_dssp -TTSSCEEEEE---CHH----HHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHT------S--TTHHHHHHHHHHHHH
T ss_pred -CCcceEEEEE---cHH----HHHhhccCCCccccCCCCcCHHHHHHHHHHHHHHH------h--cCHHHHHHHHHHHHH
Confidence 8999999964 888 777665421 23344567888888777774211 0 123334444444444
Q ss_pred HHHHh----hCCCCCccccccCcceeEecCC-----C------------H-HHHHHHhhhccEEEeCCC--cEEecc-CC
Q 013839 351 QNLEK----LGSSLNWEHITNQLGMFCFSGL-----T------------P-YQVDRLAKEFHIYMTQDG--RISMAG-VT 405 (435)
Q Consensus 351 ~~l~~----~~~~~~~~~~~~~~g~~~~~~~-----~------------~-~~~~~ll~~~gI~i~pgg--Ris~~~-~~ 405 (435)
+.|++ ++. ....+..|+++|+.+ . . ++...+ .++||.+.|++ |+++.. .+
T Consensus 335 ~~l~~~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~Gi~v~~~~~~r~~~~~~~t 409 (427)
T 3fq8_A 335 DGLLAIAQETGH----AACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGM-LEQGIYLAPSQFEAGFTSLAHT 409 (427)
T ss_dssp HHHHHHHHHTTC----CCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHH-HHTTEECCSSTTSCEECCTTCC
T ss_pred HHHHHHHHhCCC----CeEEEEeeeEEEEEEecCccccccccccccHHHHHHHHHHH-HHCCcEEecCCCCCEEeeCcCC
Confidence 44443 332 122233455665533 1 1 233455 56899999987 776543 38
Q ss_pred CCcHHHHHHHHHHHHHh
Q 013839 406 TGNVNYLANAIHEVTRS 422 (435)
Q Consensus 406 ~e~i~~~~~~l~~~l~~ 422 (435)
++++++++++|++++++
T Consensus 410 ~e~i~~~l~~l~~~l~~ 426 (427)
T 3fq8_A 410 EEDIDATLAAARTVMSA 426 (427)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 89999999999998864
No 138
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}
Probab=99.95 E-value=8.4e-26 Score=222.39 Aligned_cols=316 Identities=14% Similarity=0.123 Sum_probs=216.2
Q ss_pred eeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCC-CcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHH
Q 013839 54 NLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESIS-ASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRL 132 (435)
Q Consensus 54 ~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~-~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~ 132 (435)
+|+.|+| +. +.|+...+.+.+.+..+ .|++ ..+..++++++++++. . ++++ +++||++|+.+
T Consensus 20 ~l~~~~p-~~---~~p~~~~~a~~~~~~~~---~y~~~~~~~~~l~~~la~~~~-~-------~~v~--~~~ggt~al~~ 82 (424)
T 2po3_A 20 PLLVGRP-NR---IDRARLYERLDRALDSQ---WLSNGGPLVREFEERVAGLAG-V-------RHAV--ATCNATAGLQL 82 (424)
T ss_dssp CEETTCC-CC---CCHHHHHHHHHHHHHHT---CCSSSCHHHHHHHHHHHHHHT-S-------SEEE--EESCHHHHHHH
T ss_pred cccccCC-CC---CChHHHHHHHHHHHhcC---CcccCCHHHHHHHHHHHHHhC-C-------CeEE--EeCCHHHHHHH
Confidence 6889986 33 33444444444444322 3877 7889999999999983 2 2566 89999999998
Q ss_pred HHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCC
Q 013839 133 FAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDP 212 (435)
Q Consensus 133 ~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~ 212 (435)
+ +.++ .+||+|++++|+|..+...++..|++++.+++ +++++.+|+++|++.++ +++++++++ ||||..
T Consensus 83 ~--l~~l-~~gd~Vlv~~~~~~~~~~~~~~~G~~~~~v~~-~~~~~~~d~~~l~~~i~---~~~~~v~~~---~~tG~~- 151 (424)
T 2po3_A 83 L--AHAA-GLTGEVIMPSMTFAATPHALRWIGLTPVFADI-DPDTGNLDPDQVAAAVT---PRTSAVVGV---HLWGRP- 151 (424)
T ss_dssp H--HHHH-TCCSEEEEESSSCTHHHHHHHHTTCEEEEECB-CTTTSSBCHHHHGGGCC---TTEEEEEEE---CGGGCC-
T ss_pred H--HHHc-CCCCEEEECCCccHHHHHHHHHcCCEEEEEec-CCCcCCcCHHHHHHhhC---cCCcEEEEE---CCCCCc-
Confidence 8 4444 47899999999999999999999999999998 34567899999999887 567888874 589986
Q ss_pred CHHHHHHHHHHHHhcCceeeeeccCC-CccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhH
Q 013839 213 TEEQWREISYQFKVKGHFPFFDMAYQ-GFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQ 291 (435)
Q Consensus 213 ~~~~l~~i~~~~~~~~~~vi~Deay~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~ 291 (435)
.++++|.++|++||+++|+|++|. ++.+++ . ++ ....+ +++.||||..+++|+|+||++ +++++
T Consensus 152 --~~l~~i~~la~~~~~~li~Dea~~~g~~~~~--~---~~---~~~~d--i~~~S~sk~K~l~~~~~G~~v--~~~~~- 216 (424)
T 2po3_A 152 --CAADQLRKVADEHGLRLYFDAAHALGCAVDG--R---PA---GSLGD--AEVFSFHATKAVNAFEGGAVV--TDDAD- 216 (424)
T ss_dssp --CCHHHHHHHHHHTTCEEEEECTTCTTCEETT--E---ET---TSSSS--EEEEECCTTSSSCCSSCEEEE--ESCHH-
T ss_pred --CCHHHHHHHHHHcCCEEEEECccccCCeECC--e---ec---ccccC--EEEEeCCCCCCccCCCCeEEE--eCCHH-
Confidence 467799999999999999999998 465542 1 11 11122 889999966666779999996 42377
Q ss_pred HHHHHHHHHHHhhccccC---------CChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCc
Q 013839 292 AAAIRSQIQQIARAMYGS---------PPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNW 362 (435)
Q Consensus 292 ~~~~~~~l~~~~~~~~~~---------~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 362 (435)
+++.+.......... ...+.+.+++.++.. .+.++.+.++.+++++++.+.|++++ ++
T Consensus 217 ---l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~-------~~~~~~~~~~~~~~~~~l~~~L~~~~---g~ 283 (424)
T 2po3_A 217 ---LAARIRALHNFGFDLPGGSPAGGTNAKMSEAAAAMGLTS-------LDAFPEVIDRNRRNHAAYREHLADLP---GV 283 (424)
T ss_dssp ---HHHHHHHHHBTTTTCTTCCTTCCCBCCCCHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHTCSCT---TE
T ss_pred ---HHHHHHHHHhcCccccccccccCcCCCcCHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhccCC---Cc
Confidence 777666544321111 001223333333321 13455666777777778888887652 14
Q ss_pred cccc-cCcc---eeEe-c-------CCCHHHHHHHhhhccEEEeCC-C---------------------c-----EEec-
Q 013839 363 EHIT-NQLG---MFCF-S-------GLTPYQVDRLAKEFHIYMTQD-G---------------------R-----ISMA- 402 (435)
Q Consensus 363 ~~~~-~~~g---~~~~-~-------~~~~~~~~~ll~~~gI~i~pg-g---------------------R-----is~~- 402 (435)
.+.. +.++ +++| + +.+.+.+.+.|.++||.+.+. + | |+++
T Consensus 284 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~g~~~~~~~~r~~~~~l~l~~ 363 (424)
T 2po3_A 284 LVADHDRHGLNNHQYVIVEIDEATTGIHRDLVMEVLKAEGVHTRAYFSPGCHELEPYRGQPHAPLPHTERLAARVLSLPT 363 (424)
T ss_dssp EECCGGGGSCCCCCCEEEEECHHHHSSCHHHHHHHHHHTTEECBCTTCSCGGGSTTTTTSCCCCCHHHHHHHTTEEEECC
T ss_pred cccCCCCCCccccEEEEEEECCccchhhHHHHHHHHHHCCCceecccCCccccchhhhhcCCCCChhHHHHhcCEEEeeC
Confidence 4443 3332 2333 3 345666655667799999752 0 3 6653
Q ss_pred --cCCCCcHHHHHHHHHHHHHhhhh
Q 013839 403 --GVTTGNVNYLANAIHEVTRSEQE 425 (435)
Q Consensus 403 --~~~~e~i~~~~~~l~~~l~~~~~ 425 (435)
..+++++++++++|++++++..+
T Consensus 364 ~~~~t~e~i~~~~~~L~~~~~~~~~ 388 (424)
T 2po3_A 364 GTAIGDDDIRRVADLLRLCATRGRE 388 (424)
T ss_dssp STTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhhhHH
Confidence 34789999999999999876554
No 139
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Probab=99.94 E-value=5.2e-26 Score=226.09 Aligned_cols=347 Identities=11% Similarity=0.013 Sum_probs=208.8
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCch
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~ 127 (435)
++...+|+..|.+...-|. .++.+++++.+++... ...|....+..+.++++++++..... ...++|. +++||+
T Consensus 48 ~g~~ylD~~~~~~~~~lG~-~~p~v~~A~~~~~~~~-~~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~--~~~ggs 121 (459)
T 4a6r_A 48 EGNKIIDGMAGLWCVNVGY-GRKDFAEAARRQMEEL-PFYNTFFKTTHPAVVELSSLLAEVTP--AGFDRVF--YTNSGS 121 (459)
T ss_dssp TCCEEEETTHHHHTCTTCB-CCHHHHHHHHHHHHHC-SCCCTTSSSCCHHHHHHHHHHHHHSC--TTCCEEE--EESSHH
T ss_pred CCCEEEECCCchhcccCCC-CCHHHHHHHHHHHHhc-cccccccccCCHHHHHHHHHHHHhCC--CCCCEEE--EeCchH
Confidence 5678999999864232332 2344555555555422 21233333444555555555522111 1145777 999999
Q ss_pred hHHHHHHHHHHHh------CCCCEEEEcCCCChhhHHHHhhCCC-------------CeeeeeecC--C-CCCCcC----
Q 013839 128 GACRLFAEFQRRF------HPESHIYFPDPTWSNHHNIWRDAQI-------------PERTYHYYD--P-DSKSLD---- 181 (435)
Q Consensus 128 ~a~~~~~~~~~~~------~~gd~Vlv~~p~y~~~~~~~~~~g~-------------~~~~v~~~~--~-~~~~~d---- 181 (435)
+|+..+..+.... .++++|++.+|+|.++.......+. .+..++... . +++ +|
T Consensus 122 eA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~d~~~~ 200 (459)
T 4a6r_A 122 ESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKD-MTPDEF 200 (459)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTT-CCHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccCCcc-cCHHHH
Confidence 9999984332211 2569999999999887654443322 122232100 0 111 34
Q ss_pred ----hHhHHHHhhcCC-CCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHh
Q 013839 182 ----FAALMDDIKNAP-DSSFFLLHPSAHNPTGV-DPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIF 255 (435)
Q Consensus 182 ----~e~l~~~i~~~~-~~~~~v~~~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~ 255 (435)
+++|++.+.+.. +++++++++.++|++|. ..+++.+++|.++|++||+++|+||+|.+|+..+. ......+
T Consensus 201 ~~~~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~G~---~~~~~~~ 277 (459)
T 4a6r_A 201 GVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTGE---WFGHQHF 277 (459)
T ss_dssp HHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SSHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccc---cchHhhc
Confidence 788888886422 34566666666666666 44899999999999999999999999998876541 1122222
Q ss_pred hhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHH---HHhhccccCCChhHHHHHHHHhCChhhHHHHH
Q 013839 256 LEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQ---QIARAMYGSPPVHGILLVATILSDPNLKSLWI 332 (435)
Q Consensus 256 ~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~ 332 (435)
+...++ .+|||.++..|+|+||+++ +++ +++.+. ......+.+.+.+++.++.++|+...
T Consensus 278 -~~~pdi---~t~sK~l~gg~~~lg~v~~---~~~----i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~------ 340 (459)
T 4a6r_A 278 -GFQPDL---FTAAKGLSSGYLPIGAVFV---GKR----VAEGLIAGGDFNHGFTYSGHPVCAAVAHANVAALR------ 340 (459)
T ss_dssp -TCCCSE---EEECGGGGTTSSCCEEEEE---CHH----HHHHHHHHCTTHHHHHHCSCHHHHHHHHHHHHHHH------
T ss_pred -CCCCCe---eehhhhhcCCCCCccceee---CHH----HHHHhhcCCCcccCCCCCCCHHHHHHHHHHHHHHh------
Confidence 222222 3689999855599999964 888 777776 32333456778888888888876321
Q ss_pred HHHHHHHHHHH-HHHHHHHHHH-HhhCCCCCccccccCcceeEecCC--C-------------HHHH-HHHhhhccEEEe
Q 013839 333 DEVKIMADRIQ-RKRTTLRQNL-EKLGSSLNWEHITNQLGMFCFSGL--T-------------PYQV-DRLAKEFHIYMT 394 (435)
Q Consensus 333 ~~~~~~~~~~~-~~~~~l~~~l-~~~~~~~~~~~~~~~~g~~~~~~~--~-------------~~~~-~~ll~~~gI~i~ 394 (435)
+ +...++++ ++.+.+++.| +.+.....+....+.+. |+++.+ + ...+ ..+ .++||.+.
T Consensus 341 ~--~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~ 416 (459)
T 4a6r_A 341 D--EGIVQRVKDDIGPYMQKRWRETFSRFEHVDDVRGVGM-VQAFTLVKNKAKRELFPDFGEIGTLCRDIF-FRNNLIMR 416 (459)
T ss_dssp H--TCHHHHHHHTHHHHHHHHHHHHHTTCTTEEEEEEETT-EEEEEECSBTTTTBCCSSTTHHHHHHHHHH-HHTTEECE
T ss_pred c--chHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEE-EEEEEEecCccccccccchHHHHHHHHHHH-HHCCeEEe
Confidence 1 12333344 4444444444 33321012334455555 433321 0 2334 545 46799999
Q ss_pred CCC---cEEec-cCCCCcHHHHHHHHHHHHHhhhh
Q 013839 395 QDG---RISMA-GVTTGNVNYLANAIHEVTRSEQE 425 (435)
Q Consensus 395 pgg---Ris~~-~~~~e~i~~~~~~l~~~l~~~~~ 425 (435)
|+| ||++. ..+++++++++++|++++++...
T Consensus 417 ~~g~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~ 451 (459)
T 4a6r_A 417 ACGDHIVSAPPLVMTRAEVDEMLAVAERCLEEFEQ 451 (459)
T ss_dssp EETTEEEECCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 976 88843 23899999999999999987654
No 140
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*
Probab=99.94 E-value=1.1e-25 Score=223.87 Aligned_cols=348 Identities=11% Similarity=0.018 Sum_probs=213.0
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCch
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~ 127 (435)
++...||+..|.+...-|. .++.+++++.+++... ...|....+..++++++++++..... ...+++. +++||+
T Consensus 49 ~G~~~lD~~~~~~~~~lG~-~~p~v~~A~~~~~~~~-~~~~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~--~~~gGs 122 (460)
T 3gju_A 49 NGRKSIDAFAGLYCVNVGY-GRQKIADAIATQAKNL-AYYHAYVGHGTEASITLAKMIIDRAP--KGMSRVY--FGLSGS 122 (460)
T ss_dssp TCCEEEETTHHHHTCTTCB-CCHHHHHHHHHHHHHH-SCCCCCTTCCCHHHHHHHHHHHHHSC--TTEEEEE--EESSHH
T ss_pred CCCEEEECCcchhhccCCC-CCHHHHHHHHHHHHhc-cccccccccCCHHHHHHHHHHHhhCC--CCcCEEE--EeCchH
Confidence 5678999999853222222 2344445444554422 12233333444555555555522110 1145777 999999
Q ss_pred hHHHHHHHHHHHh------CCCCEEEEcCCCChhhHHHHhhCCC-------------CeeeeeecC---CCCCCcC----
Q 013839 128 GACRLFAEFQRRF------HPESHIYFPDPTWSNHHNIWRDAQI-------------PERTYHYYD---PDSKSLD---- 181 (435)
Q Consensus 128 ~a~~~~~~~~~~~------~~gd~Vlv~~p~y~~~~~~~~~~g~-------------~~~~v~~~~---~~~~~~d---- 181 (435)
+|+..+..+.... .++++|++.+|+|.++.......+. .+..++... .++.+.+
T Consensus 123 eA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 202 (460)
T 3gju_A 123 DANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQF 202 (460)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCccccChhHH
Confidence 9999984332211 3569999999999877654433222 233333210 1222334
Q ss_pred ----hHhHHHHhhcC-CCCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHh
Q 013839 182 ----FAALMDDIKNA-PDSSFFLLHPSAHNPTGV-DPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIF 255 (435)
Q Consensus 182 ----~e~l~~~i~~~-~~~~~~v~~~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~ 255 (435)
+++|++++.+. ++++++|+++.++|++|. ..+++.+++|.++|++||+++|+||+|.+|+..+. ......+
T Consensus 203 ~~~~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~---~~~~~~~ 279 (460)
T 3gju_A 203 SQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLGT---MFGSDHY 279 (460)
T ss_dssp HHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SCHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccc---cchHhhc
Confidence 58888888642 245678888777888887 66888899999999999999999999998875431 1122222
Q ss_pred hhcCCeEEEEecccccccccC-CcccEEEEEecChhHHHHHHHHHHHH-------hhccccCCChhHHHHHHHHhCChhh
Q 013839 256 LEDEHLIGCAQSYAKSMGLYG-HRVGCLSILCVDSKQAAAIRSQIQQI-------ARAMYGSPPVHGILLVATILSDPNL 327 (435)
Q Consensus 256 ~~~~~~~i~~~s~SK~~g~~G-~RvG~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~q~~~~~~l~~~~l 327 (435)
+...+ +.+|||.++ .| +|+||+++ +++ +++.+... ....+.+.+.+++.++.++|+...
T Consensus 280 -~~~pd---i~t~sK~l~-gG~~~lg~v~~---~~~----i~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~- 346 (460)
T 3gju_A 280 -GIKPD---LITIAKGLT-SAYAPLSGVIV---ADR----VWQVLVQGSDKLGSLGHGWTYSAHPICVAAGVANLELID- 346 (460)
T ss_dssp -TCCCS---EEEECGGGT-TTSSCCEEEEE---EHH----HHHHHHHHHHHHCSCSCCCTTTTCHHHHHHHHHHHHHHH-
T ss_pred -CCCCC---eeeeehhhc-CCCCCeEEEEE---CHH----HHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHH-
Confidence 22222 336899997 56 89999974 788 77777532 223456778888888888886321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCCC---------------HHHHHHHhhhccEE
Q 013839 328 KSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGLT---------------PYQVDRLAKEFHIY 392 (435)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~---------------~~~~~~ll~~~gI~ 392 (435)
+ ++..++.++..+..++.+.+.+++++. +....+.+. |+++.+. ...+.+.+.++||.
T Consensus 347 -~--~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~ 419 (460)
T 3gju_A 347 -E--MDLVTNAGETGAYFRAELAKAVGGHKN---VGEVRGDGM-LAAVEFVADKDDRVFFDASQKIGPQVATALAASGVI 419 (460)
T ss_dssp -H--TTHHHHHHHHHHHHHHHHHHHHTTSTT---EEEEEEETT-EEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEE
T ss_pred -h--ccHHHHHHHHHHHHHHHHHHHHhcCCC---eEEEeeeeE-EEEEEEccCccccccccchHHHHHHHHHHHHHCCeE
Confidence 0 123444445555555555555555432 334445554 4443220 22343334568999
Q ss_pred EeCCC-----cEEec-cCCCCcHHHHHHHHHHHHHhhh
Q 013839 393 MTQDG-----RISMA-GVTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 393 i~pgg-----Ris~~-~~~~e~i~~~~~~l~~~l~~~~ 424 (435)
+.|+| ||++. ..+++++++++++|++++++..
T Consensus 420 v~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 457 (460)
T 3gju_A 420 GRAMPQGDILGFAPPLCLTREQADIVVSKTADAVKSVF 457 (460)
T ss_dssp CEECSSSCEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99864 88843 3488999999999999997654
No 141
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}
Probab=99.94 E-value=9.3e-26 Score=219.91 Aligned_cols=330 Identities=11% Similarity=0.059 Sum_probs=207.0
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCC--CCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCC
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLES--ISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALS 125 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y--~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~g 125 (435)
+++..+|++.|.+.+.-|. .++++++++.+++... .+.| .+.....++++.+++++ + .+++. +++|
T Consensus 34 ~g~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~~-~-------~~~v~--~~~g 101 (395)
T 3nx3_A 34 KAKKYLDFSSGIGVCALGY-NHAKFNAKIKAQVDKL-LHTSNLYYNENIAAAAKNLAKAS-A-------LERVF--FTNS 101 (395)
T ss_dssp TCCEEEESSHHHHTCTTCB-SCHHHHHHHHHHHTTC-SCCCTTSBCHHHHHHHHHHHHHH-T-------CSEEE--EESS
T ss_pred CCCEEEECCCcHHhccCCC-CCHHHHHHHHHHHHhc-cccccccCCHHHHHHHHHHHHhc-C-------CCeEE--EeCC
Confidence 5678999999965333222 2344445555555432 2212 12233445666666655 2 24677 8999
Q ss_pred chhHHHHHHHHHHHh-----CCCCEEEEcCCCChhhHHHHhhCCC-------------CeeeeeecCCCCCCcChHhHHH
Q 013839 126 GTGACRLFAEFQRRF-----HPESHIYFPDPTWSNHHNIWRDAQI-------------PERTYHYYDPDSKSLDFAALMD 187 (435)
Q Consensus 126 g~~a~~~~~~~~~~~-----~~gd~Vlv~~p~y~~~~~~~~~~g~-------------~~~~v~~~~~~~~~~d~e~l~~ 187 (435)
|++|+..+..+.... .++|+|++.+|+|.++.......+. ++..++. .|+++|++
T Consensus 102 g~ea~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~ 174 (395)
T 3nx3_A 102 GTESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKY-------NDISSVEK 174 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECT-------TCHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCC-------CCHHHHHH
Confidence 999999985333222 4679999999999877544433332 2222221 27899998
Q ss_pred HhhcCCCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEe
Q 013839 188 DIKNAPDSSFFLLHPSAHNPTGVD-PTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQ 266 (435)
Q Consensus 188 ~i~~~~~~~~~v~~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 266 (435)
+++ ++++++++.+++|++|.. .+++++++|.++|++||+++|+||+|.++...+. ....... +. ...+.
T Consensus 175 ~l~---~~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~---~~~~~~~-~~---~~d~~ 244 (395)
T 3nx3_A 175 LVN---EKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGK---FFAYEHA-QI---LPDIM 244 (395)
T ss_dssp TCC---TTEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGGGGG-TC---CCSEE
T ss_pred hcc---CCeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCc---chhHHhc-CC---CCCEE
Confidence 886 567888887778888876 6788899999999999999999999988865431 1111111 11 12244
Q ss_pred cccccccccCCcccEEEEEecChhHHHHH-HHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHH
Q 013839 267 SYAKSMGLYGHRVGCLSILCVDSKQAAAI-RSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRK 345 (435)
Q Consensus 267 s~SK~~g~~G~RvG~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~ 345 (435)
|+||.++ .|+|+||+++ +++ + ++.+.......+.+.+.+++.++.++|+... + ++..++.++..+..
T Consensus 245 t~sK~~~-~G~~~G~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~aa~aal~~~~--~--~~~~~~~~~~~~~~ 312 (395)
T 3nx3_A 245 TSAKALG-CGLSVGAFVI---NQK----VASNSLEAGDHGSTYGGNPLVCAGVNAVFEIFK--E--EKILENVNKLTPYL 312 (395)
T ss_dssp EECGGGT-TTSCCEEEEE---CHH----HHHHHSCTTCCSSCBSCCHHHHHHHHHHHHHHH--H--TTHHHHHHHHHHHH
T ss_pred Eeccccc-CCCceEEEEE---chh----hhhhhcCCcccCCCCCCCHHHHHHHHHHHHHHH--h--hHHHHHHHHHHHHH
Confidence 7899998 5999999974 777 6 6666554444556788888888888775321 0 02223333333333
Q ss_pred HHHHHHHHHhhCCCCCccccccCcceeEecCC----CHHHHHHHhhhccEEEeCCC----cEEecc-CCCCcHHHHHHHH
Q 013839 346 RTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL----TPYQVDRLAKEFHIYMTQDG----RISMAG-VTTGNVNYLANAI 416 (435)
Q Consensus 346 ~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~----~~~~~~~ll~~~gI~i~pgg----Ris~~~-~~~e~i~~~~~~l 416 (435)
++.+.+.+..++. +....+. |.|+|+.+ +.+.+.+.+.++||.+.++| ||+++. .+++++++++++|
T Consensus 313 ~~~l~~~~~~~~~---~~~~~~~-g~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~iRi~~~~~~t~e~i~~~l~~l 388 (395)
T 3nx3_A 313 EQSLDELINEFDF---CKKRKGL-GFMQGLSLDKSVKVAKVIQKCQENALLLISCGENDLRFLPPLILQKEHIDEMSEKL 388 (395)
T ss_dssp HHHHHHHHHHCTT---EEEEEEE-TTEEEEEECTTSCHHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC---eEEEEeE-EEEEEEEeCCcchHHHHHHHHHHCCCEEecCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3444444433332 2233333 44565533 34444334456899999875 887533 3889999999999
Q ss_pred HHHHHh
Q 013839 417 HEVTRS 422 (435)
Q Consensus 417 ~~~l~~ 422 (435)
++++++
T Consensus 389 ~~~l~~ 394 (395)
T 3nx3_A 389 RKALKS 394 (395)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 998864
No 142
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*
Probab=99.94 E-value=2.6e-26 Score=226.63 Aligned_cols=339 Identities=10% Similarity=0.062 Sum_probs=207.8
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCC--CCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCC
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGS--EFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALS 125 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~g 125 (435)
++...+|+..|.+...-|+ .++++++.+.+++... ....|+. ....++++.+++++ +.. +++|. +++|
T Consensus 41 ~g~~~lD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~la~~~-~~~-----~~~v~--~~~g 110 (433)
T 1zod_A 41 DGRAILDFTSGQMSAVLGH-CHPEIVSVIGEYAGKLDHLFSEMLS-RPVVDLATRLANIT-PPG-----LDRAL--LLST 110 (433)
T ss_dssp TCCEEEETTHHHHTCTTCB-TCHHHHHHHHHHHHHCCCCCTTCCC-HHHHHHHHHHHHHS-CTT-----CCEEE--EESC
T ss_pred CCCEEEEcccchhccccCC-CCHHHHHHHHHHHHhCcccccccCC-HHHHHHHHHHHHhC-CCC-----cCEEE--EeCc
Confidence 4567889988874222221 2334444444444321 1123332 23456777777664 221 46788 9999
Q ss_pred chhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhC-C-----------CCeeeeeecCC--CCC--------CcChH
Q 013839 126 GTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDA-Q-----------IPERTYHYYDP--DSK--------SLDFA 183 (435)
Q Consensus 126 g~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~-g-----------~~~~~v~~~~~--~~~--------~~d~e 183 (435)
|++|+.++..+......+|+|++.+|+|.++....... + ..+..++.... ..+ .+|++
T Consensus 111 g~ea~~~a~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~ 190 (433)
T 1zod_A 111 GAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELD 190 (433)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHH
T ss_pred hHHHHHHHHHHHHHhhCCCeEEEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccCCchhhhHHHHHH
Confidence 99999998432221234589999999997764432211 1 12333332110 112 24689
Q ss_pred hHHHHhhcC-CCCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCe
Q 013839 184 ALMDDIKNA-PDSSFFLLHPSAHNPTGV-DPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHL 261 (435)
Q Consensus 184 ~l~~~i~~~-~~~~~~v~~~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~ 261 (435)
+|++++++. ++++++++++..+||||. ..+++++++|.++|++||+++|+||+|.++...+. ....... +...+
T Consensus 191 ~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g~---~~~~~~~-~~~~d 266 (433)
T 1zod_A 191 YAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGT---MFACQRD-GVTPD 266 (433)
T ss_dssp HHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSTHHHH-TCCCS
T ss_pred HHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCch---HhHHhhc-CCCCC
Confidence 999988742 134566666544688996 56889999999999999999999999998865431 1111111 22222
Q ss_pred EEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhc--cccCCChhHHHHHHHHhCChhhHHHHHHHHHHHH
Q 013839 262 IGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARA--MYGSPPVHGILLVATILSDPNLKSLWIDEVKIMA 339 (435)
Q Consensus 262 ~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~ 339 (435)
+.|+||.++. |+|+||+++ +++ +++.+...... .+.+.+.+++.++.++++... + +...
T Consensus 267 ---i~s~sK~~~~-G~~ig~~~~---~~~----~~~~~~~~~~~~~~t~~~~~~~~~a~~aal~~~~------~--~~~~ 327 (433)
T 1zod_A 267 ---ILTLSKTLGA-GLPLAAIVT---SAA----IEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQ------R--DGLV 327 (433)
T ss_dssp ---EEEECHHHHT-TSSCEEEEE---CHH----HHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHH------H--TTHH
T ss_pred ---EEEecccccC-CCCeeEEEE---hHH----HHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHH------h--CCHH
Confidence 3489999995 999999974 778 77777653212 456678888888877775321 1 2345
Q ss_pred HHHHHHHHHHHHHHHhhC--CCCCccccccCcceeEecCCC------------HH-HHHHHhhhccEEEeCC------C-
Q 013839 340 DRIQRKRTTLRQNLEKLG--SSLNWEHITNQLGMFCFSGLT------------PY-QVDRLAKEFHIYMTQD------G- 397 (435)
Q Consensus 340 ~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~g~~~~~~~~------------~~-~~~~ll~~~gI~i~pg------g- 397 (435)
++++++++.+.+.|+++. .+ .+....+. |.|+|+.+. .. +...++ ++||.+.|+ +
T Consensus 328 ~~~~~~~~~l~~~l~~l~~~~~-~~~~~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~~~~~~ 404 (433)
T 1zod_A 328 ARANVMGDRLRRGLLDLMERFD-CIGDVRGR-GLLLGVEIVKDRRTKEPADGLGAKITRECM-NLGLSMNIVQLPGMGGV 404 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCT-TEEEEEEE-TTEEEEEEEEETTTTEECTTHHHHHHHHHH-HTTEECCEECCTTSCCE
T ss_pred HHHHHHHHHHHHHHHHHHHhCC-CeEEEEEE-EEEEEEEEecCccccCCChHHHHHHHHHHH-HCCCeEeccCCCCCCCE
Confidence 566666777777776541 11 12233444 445565331 33 345554 689999875 3
Q ss_pred -cEEec-cCCCCcHHHHHHHHHHHHHh
Q 013839 398 -RISMA-GVTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 398 -Ris~~-~~~~e~i~~~~~~l~~~l~~ 422 (435)
||+++ ..+++++++++++|++++++
T Consensus 405 lRi~~~~~~t~~~i~~~l~~l~~~l~~ 431 (433)
T 1zod_A 405 FRIAPPLTVSEDEIDLGLSLLGQAIER 431 (433)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEECCcCCCHHHHHHHHHHHHHHHHH
Confidence 88653 34899999999999998864
No 143
>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}
Probab=99.94 E-value=8.9e-26 Score=217.02 Aligned_cols=315 Identities=11% Similarity=0.066 Sum_probs=206.7
Q ss_pred CeeeeecceecCCCCCcccchHHHHHHHHhcCCCC-CCCCCC---cccHHHHHHHHHhHcCCCCccccCCCeeeEecCCc
Q 013839 51 YKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEF-LESISA---SVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSG 126 (435)
Q Consensus 51 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Y~~~---~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg 126 (435)
+.+.|..|.. +.++.+++++.+.+..+.. ..+... .-..++++.+++++ +.. .+++++ +++||
T Consensus 4 ~~~~~~p~p~------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-g~~----~~~~v~--~~~g~ 70 (362)
T 3ffr_A 4 NKIYFTPGPS------ELYPTVRQHMITALDEKIGVISHRSKKFEEVYKTASDNLKTLL-ELP----SNYEVL--FLASA 70 (362)
T ss_dssp CCEEECSSSC------CCCTTHHHHHHHHHHTTTTTSCTTSHHHHHHHHHHHHHHHHHT-TCC----TTEEEE--EESCH
T ss_pred cceeccCCCc------CCCHHHHHHHHHHhcCCccCcCCCCHHHHHHHHHHHHHHHHHh-CCC----CCcEEE--EeCCc
Confidence 3456665542 3445555555555543321 111111 12345666666665 321 135677 89999
Q ss_pred hhHHHHHHHHHHHhCCCCEEEEcCCCChh-hHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCC
Q 013839 127 TGACRLFAEFQRRFHPESHIYFPDPTWSN-HHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAH 205 (435)
Q Consensus 127 ~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~-~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~ 205 (435)
++|+.++ +.+++.+ +.+++..|.|.. +...++..|++++.++. ++++.+|+++++ +. ++++++++++|+
T Consensus 71 t~al~~~--~~~l~~~-~~i~~~~~~~~~~~~~~~~~~g~~~~~v~~--~~~~~~d~~~l~--~~---~~~~~v~~~~~~ 140 (362)
T 3ffr_A 71 TEIWERI--IQNCVEK-KSFHCVNGSFSKRFYEFAGELGREAYKEEA--AFGKGFYPADIT--VP---ADAEIICLTHNE 140 (362)
T ss_dssp HHHHHHH--HHHHCSS-EEEEEECSHHHHHHHHHHHHTTCEEEEEEC--CTTCCCCGGGCC--CC---TTCCEEEEESEE
T ss_pred hHHHHHH--HHhccCC-cEEEEcCcHHHHHHHHHHHHhCCCeEEEec--CCCCCCCHHHHh--cc---CCccEEEEEcCC
Confidence 9999988 7777777 556666666652 34466788999999987 445789999998 44 678999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhc-CceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEeccccccc-ccCCcccEEE
Q 013839 206 NPTGVDPTEEQWREISYQFKVK-GHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMG-LYGHRVGCLS 283 (435)
Q Consensus 206 NPtG~~~~~~~l~~i~~~~~~~-~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g-~~G~RvG~~~ 283 (435)
||||.+++ +++|.++|++| |+++|+|++|...... . +....++++.|+||.++ ++| +|+++
T Consensus 141 nptG~~~~---l~~i~~la~~~p~~~li~D~a~~~~~~~-~-----------~~~~~d~~~~s~~K~~~~~~G--~g~~~ 203 (362)
T 3ffr_A 141 TSSGVSMP---VEDINTFRDKNKDALIFVDAVSSLPYPK-F-----------DWTKIDSVFFSVQKCFGLPAG--LGVWI 203 (362)
T ss_dssp TTTTEECC---HHHHTTSGGGSTTSEEEEECTTTTTSSC-C-----------CTTSCSEEEEETTSTTCCCSC--CEEEE
T ss_pred CCcceeCC---HHHHHHHHHhCCCCEEEEecccccCCcc-c-----------ChhHCcEEEEecccccCCCCc--eEEEE
Confidence 99999998 55899999999 9999999997654422 1 11124588999999998 777 46665
Q ss_pred EEecChhHHHHHHHHHHHHhh---------------------ccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q 013839 284 ILCVDSKQAAAIRSQIQQIAR---------------------AMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRI 342 (435)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~~~~---------------------~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~ 342 (435)
+ +++ +++.+..... ....+++...+.++..++.... ...+++.++++
T Consensus 204 ~---~~~----~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~-----~~~~~~~~~~~ 271 (362)
T 3ffr_A 204 L---NDR----VIEKSKALLAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDML-----QISADGIRKQT 271 (362)
T ss_dssp E---EHH----HHHHHHHHHHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHH-----HHCHHHHHHHH
T ss_pred E---CHH----HHHHhhhccccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHH-----HccHHHHHHHH
Confidence 3 777 5555554332 1134566666666666664211 12367788889
Q ss_pred HHHHHHHHHHHHhhCCCCCccccc----cCcceeEecCC--CHHHHHHHhhhccEEEeCC------C--cEEecc-CCCC
Q 013839 343 QRKRTTLRQNLEKLGSSLNWEHIT----NQLGMFCFSGL--TPYQVDRLAKEFHIYMTQD------G--RISMAG-VTTG 407 (435)
Q Consensus 343 ~~~~~~l~~~l~~~~~~~~~~~~~----~~~g~~~~~~~--~~~~~~~ll~~~gI~i~pg------g--Ris~~~-~~~e 407 (435)
+++++.+.+.|++++. +.... ...+.++|+.+ +.+.+.+.|.++||.+.+| + |++++. .+++
T Consensus 272 ~~~~~~l~~~L~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~iRis~~~~~~~e 348 (362)
T 3ffr_A 272 EEKAALINTYIESSKV---FSFGVEDAKLRSMTTIVANTTMLPGEINKILEPFDMAVGAGYGSKKETQIRIANFPAHSLE 348 (362)
T ss_dssp HHHHHHHHHHHHHCSS---EEESSSCGGGBCSSEEEEEESSCHHHHHHHHGGGTEEEEECSGGGTTTEEEEECCTTSCHH
T ss_pred HHHHHHHHHHHHHccC---ceeccCChhhcCCceEEEecCCCHHHHHHHHHHCCeEEecCccccCCCEEEEECCCCCCHH
Confidence 9999999999998731 34433 12344455433 4555544445569999976 2 999854 3778
Q ss_pred cHHHHHHHHHHHH
Q 013839 408 NVNYLANAIHEVT 420 (435)
Q Consensus 408 ~i~~~~~~l~~~l 420 (435)
++++++++|++++
T Consensus 349 ~i~~l~~~l~~~~ 361 (362)
T 3ffr_A 349 QVHKLVQTLKEKI 361 (362)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 8999999888753
No 144
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Probab=99.94 E-value=7e-26 Score=224.63 Aligned_cols=345 Identities=12% Similarity=0.027 Sum_probs=203.3
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCch
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~ 127 (435)
+++..||+..|.+...-|+ .++.+++++.+++... ..|....+..+.++++++++....... ..+++. +++||+
T Consensus 62 ~G~~ylD~~~~~~~~~lGh-~~p~v~~A~~~~~~~~--~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~~v~--~~~sGs 135 (453)
T 4ffc_A 62 DGNSFIDLGAGIAVTTVGA-SHPAVAAAIADQATHF--THTCFMVTPYEQYVQVAELLNALTPGD-HDKRTA--LFNSGA 135 (453)
T ss_dssp TSCEEEESSHHHHTCTTCT-TCHHHHHHHHHHHHHC--SCCTTTTSCCHHHHHHHHHHHHHSSCS-SCEEEE--EESSHH
T ss_pred CCCEEEEcCCCcccCcCCC-CCHHHHHHHHHHHHhc--cccccCcCCCHHHHHHHHHHHHhCCCC-CCcEEE--EeCcHH
Confidence 5678899998864232232 2444555555555422 123333333444444444442111100 034777 999999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCC--------------CeeeeeecCC--CCCCcC--------hH
Q 013839 128 GACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQI--------------PERTYHYYDP--DSKSLD--------FA 183 (435)
Q Consensus 128 ~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~--------------~~~~v~~~~~--~~~~~d--------~e 183 (435)
+|+.++..+......+++|++.+|+|.++.......+. .+..++.... +.++.+ ++
T Consensus 136 eA~~~alk~a~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 215 (453)
T 4ffc_A 136 EAVENAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAIS 215 (453)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHH
Confidence 99999853332223558999999999877654433322 2333443110 112333 34
Q ss_pred hHHHHhhcCCCCcEEEEeCCCCCCCC--CCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCe
Q 013839 184 ALMDDIKNAPDSSFFLLHPSAHNPTG--VDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHL 261 (435)
Q Consensus 184 ~l~~~i~~~~~~~~~v~~~~p~NPtG--~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~ 261 (435)
.|++.+. +...+++++.|.||+| ...+++.+++|.++|++||+++|+||+|.+|...+. ......+ +.
T Consensus 216 ~l~~~i~---~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~---~~a~~~~-~~--- 285 (453)
T 4ffc_A 216 RIETQIG---AQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGA---WFASEHE-GI--- 285 (453)
T ss_dssp HHHHHTC---GGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSTHHHH-TC---
T ss_pred HHHHhcC---CCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCcccc---cchhhhc-CC---
Confidence 4555443 3445555667777776 445788899999999999999999999998865431 1111111 21
Q ss_pred EEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q 013839 262 IGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADR 341 (435)
Q Consensus 262 ~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~ 341 (435)
...+.+|||.++. |+|+||+++ +++ +++.+.......+.+.+.++|.++.++|+... + .+..++.++.
T Consensus 286 ~pdi~t~sK~~~~-G~~~G~~~~---~~~----i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~--~--~~~~~~~~~~ 353 (453)
T 4ffc_A 286 VPDIVTMAKGIAG-GMPLSAVTG---RAE----LMDAVYAGGLGGTYGGNPVTCAAAVAALGVMR--E--LDLPARARAI 353 (453)
T ss_dssp CCSEEEECGGGGT-TSSCEEEEE---EHH----HHTTSCTTSSCCSSSSCHHHHHHHHHHHHHHH--H--TTHHHHHHHH
T ss_pred CcchHhhhhhhcC-CcCeEEEEE---CHH----HHhhhcccCcCCCCCcCHHHHHHHHHHHHHhh--h--hhHHHHHHHH
Confidence 1124478999995 999999964 777 77777655555677888999988888875321 0 0222233333
Q ss_pred HHHHHHHHHHHHHhhCCCCCccccccCcceeEecCC--------C---HHHHHHHhhhccEEEeCCC------cEEecc-
Q 013839 342 IQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL--------T---PYQVDRLAKEFHIYMTQDG------RISMAG- 403 (435)
Q Consensus 342 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~--------~---~~~~~~ll~~~gI~i~pgg------Ris~~~- 403 (435)
.+..++.+.+.+..++. +....+. |.|+|+.+ + ...+.+.+.++||.+.|+| ||+++.
T Consensus 354 ~~~l~~~l~~~~~~~~~---~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~~~~~ 429 (453)
T 4ffc_A 354 EASVTSRLSALAEEVDI---IGEVRGR-GAMLAIEIVKPGTLEPDAALTKSIAAEALSQGVLILTCGTFGNVIRLLPPLV 429 (453)
T ss_dssp HHHHHHHHHHHHHHCSS---EEEEEEE-TTEEEEEEBCTTSCCBCHHHHHHHHHHHHHTTEECCEECTTSCEEEECCCTT
T ss_pred HHHHHHHHHHHHhhCCC---eEEEEee-ceEEEEEEecCcccCCCHHHHHHHHHHHHhCCCEEecCCCCCCEEEEECCCC
Confidence 33333333333344432 2333333 44555533 1 2234333456899999864 776543
Q ss_pred CCCCcHHHHHHHHHHHHHhhh
Q 013839 404 VTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 404 ~~~e~i~~~~~~l~~~l~~~~ 424 (435)
.+++++++++++|++++++..
T Consensus 430 ~t~e~i~~~l~~l~~~l~~~~ 450 (453)
T 4ffc_A 430 IGDDLLDEGITALSDIIRAKA 450 (453)
T ss_dssp CCHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHHH
Confidence 388999999999999997654
No 145
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Probab=99.94 E-value=9.8e-26 Score=226.48 Aligned_cols=322 Identities=11% Similarity=0.065 Sum_probs=215.8
Q ss_pred hHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhC-----CC--
Q 013839 71 QCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFH-----PE-- 143 (435)
Q Consensus 71 ~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~-----~g-- 143 (435)
+.+.++..........+|....|..++++.+++++....+.+..++++. +++||++|+.++ +.++.. +|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~--~~~ggt~a~~~a--~~a~~~~~~~~~g~~ 157 (497)
T 3mc6_A 82 HLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGT--TTSGGTESLLLA--CLSAKMYALHHRGIT 157 (497)
T ss_dssp HHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEE--EESSHHHHHHHH--HHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHhhcCCCCcccChHHHHHHHHHHHHHHHHhCCCCCCCeEE--EcCcHHHHHHHH--HHHHHHHHHhcCCCC
Confidence 3333444433322245566667777888887777632222111245777 899999999888 444432 45
Q ss_pred -CEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHH
Q 013839 144 -SHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISY 222 (435)
Q Consensus 144 -d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~ 222 (435)
|+|+++.|+|..+...++..|++++.+++ +++++.+|+++|++++. +++++|++++|+||||.+.+ +++|.+
T Consensus 158 ~~~Vi~~~~~h~~~~~~~~~~G~~~~~v~~-~~~~~~~d~~~l~~~i~---~~~~~v~~~~p~nptG~~~~---l~~i~~ 230 (497)
T 3mc6_A 158 EPEIIAPVTAHAGFDKAAYYFGMKLRHVEL-DPTTYQVDLGKVKKFIN---KNTVLLVGSAPNFPHGIADD---IEGLGK 230 (497)
T ss_dssp SCEEEEETTSCHHHHHHHHHSCCEEEEECB-CTTTCSBCTTTTGGGCC---SSEEEEEEETTCTTTCCCCS---CTTTTT
T ss_pred CceEEEeCCccHHHHHHHHHcCCeEEEEec-CcccCcCCHHHHHHHHh---hCCEEEEEECCCCCCCcCCC---HHHHHH
Confidence 89999999999999999999999999998 34468899999999997 67899999999999999976 558999
Q ss_pred HHHhcCceeeeeccCCCccCC-----CCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHH
Q 013839 223 QFKVKGHFPFFDMAYQGFASG-----DLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRS 297 (435)
Q Consensus 223 ~~~~~~~~vi~Deay~~~~~~-----~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~ 297 (435)
+|++||+++|+|++|.++... +.. ..+++. ....+.++++.|++|.++ .|.++||++ + +.+ ...
T Consensus 231 la~~~g~~livD~a~~~~~~~f~~~~~~~-~~~~~~--~~~~g~d~~~~s~~K~l~-~~~~~g~~~--~-~~~----~~~ 299 (497)
T 3mc6_A 231 IAQKYKLPLHVDSCLGSFIVSFMEKAGYK-NLPLLD--FRVPGVTSISCDTHKYGF-APKGSSVIM--Y-RNS----DLR 299 (497)
T ss_dssp HHHHTTCCEEEETTTTHHHHGGGTTTTCC-SCCCCS--TTSTTCCEEEEETTTTTC-CCSSCEEEE--C-SSH----HHH
T ss_pred HHHHhCCEEEEECcchhhhhhhhhhhccc-CCcccc--ccCCCCcEEEECchhhcC-CCCCceeEE--e-cCH----HHH
Confidence 999999999999998754311 000 000000 112234678889999864 678899996 4 443 322
Q ss_pred HHHHHhhccccC-----CC---------hhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCCc
Q 013839 298 QIQQIARAMYGS-----PP---------VHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKL-GSSLNW 362 (435)
Q Consensus 298 ~l~~~~~~~~~~-----~~---------~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~ 362 (435)
.........+.+ .+ ..++.++...+.. +..++..++..++++++.+.|++. +. +
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~--------~~~~~~~~~~~~~~~~l~~~L~~~~~g---~ 368 (497)
T 3mc6_A 300 MHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGE--------NGYIESCQEIVGAAMKFKKYIQENIPD---L 368 (497)
T ss_dssp TTTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHSCTT---C
T ss_pred hhhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHhH--------HHHHHHHHHHHHHHHHHHHHHHhcCCC---E
Confidence 221111111111 11 2234444444432 345677788888899999999884 32 3
Q ss_pred ccc-ccCcceeEec--CCCHHHHHHHhhhccEEEeCCC-----cEEeccCCCCcHHHHHHHHHHHHHhhhh
Q 013839 363 EHI-TNQLGMFCFS--GLTPYQVDRLAKEFHIYMTQDG-----RISMAGVTTGNVNYLANAIHEVTRSEQE 425 (435)
Q Consensus 363 ~~~-~~~~g~~~~~--~~~~~~~~~ll~~~gI~i~pgg-----Ris~~~~~~e~i~~~~~~l~~~l~~~~~ 425 (435)
.+. ++.++++.|. +.+...+.+.|.++||.+.+++ |++++..+.+++++++++|++++++...
T Consensus 369 ~~~~~~~~~~v~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~ri~~~~~t~e~i~~~~~~L~~~l~~~~~ 439 (497)
T 3mc6_A 369 DIMGNPRYSVISFSSKTLNIHELSDRLSKKGWHFNALQKPVALHMAFTRLSAHVVDEICDILRTTVQELKS 439 (497)
T ss_dssp EECSCCCSSEEEEECTTTTHHHHHHHHHTTTCBCEECCSSCCEEEECCTTTTCTHHHHHHHHHHHHHHHTC
T ss_pred EEecCCCeeEEEEeCCCCCHHHHHHHHHhCCEEEecCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHHHHh
Confidence 444 4566666664 3455556555567899987653 8998766899999999999999987653
No 146
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}
Probab=99.94 E-value=3.6e-26 Score=219.67 Aligned_cols=305 Identities=11% Similarity=0.002 Sum_probs=196.9
Q ss_pred cccchHHHHHHHHhc-CCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCC-
Q 013839 67 PVVLQCVREAEAKIA-GSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPES- 144 (435)
Q Consensus 67 ~~~~~~~~~~~~~~~-~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd- 144 (435)
|.+.+.++++..... ......|++..+..+|++.+++++. .. ..+ ++.+|++|+.++ +..++.+||
T Consensus 21 p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~~-~~------~~i---~~~~G~~a~~~a--l~~~~~~gd~ 88 (357)
T 3lws_A 21 KRNVGVLKTAFAAVADEMASDQYGTGAIIEPFEQKFADVLG-MD------DAV---FFPSGTMAQQVA--LRIWSDETDN 88 (357)
T ss_dssp CCBHHHHHHHHTTSCTTCBCEETTEETTHHHHHHHHHHHHT-CS------EEE---EESCHHHHHHHH--HHHHHHHHTC
T ss_pred CCCHHHHHHHHHHhhcccCcccccCChHHHHHHHHHHHHhC-CC------cEE---EecCcHHHHHHH--HHHHhhcCCC
Confidence 445555555554432 1123458777788999999999983 31 223 468888888777 666677888
Q ss_pred -EEEEcCCCChhhHH---HHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCC-CCCCCHHHHHH
Q 013839 145 -HIYFPDPTWSNHHN---IWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPT-GVDPTEEQWRE 219 (435)
Q Consensus 145 -~Vlv~~p~y~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPt-G~~~~~~~l~~ 219 (435)
.|+++.++|..... .....|++++.++. +++.+|+++|+++. . ++++++++||||| |.+++.+++++
T Consensus 89 ~~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~---~~~~~d~~~l~~~~----~-~~~v~~~~p~np~~G~~~~~~~l~~ 160 (357)
T 3lws_A 89 RTVAYHPLCHLEIHEQDGLKELHPIETILVGA---ADRLMTLDEIKALP----D-IACLLLELPQREIGGVAPAFSELET 160 (357)
T ss_dssp CEEEECTTCHHHHSSTTHHHHHSSCEEEECSC---TTSCCCHHHHHTCC----S-CSEEEEESSBGGGTSBCCCHHHHHH
T ss_pred cEEEecccceeeeeccchhhhccCcEEEEecC---CCCCcCHHHHhcCc----C-cceEEEEcccccCCceeCCHHHHHH
Confidence 67777666543322 34566888888763 34579999998762 2 7889999999998 99999999999
Q ss_pred HHHHHHhcCceeeeeccCCCc--cCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHH
Q 013839 220 ISYQFKVKGHFPFFDMAYQGF--ASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRS 297 (435)
Q Consensus 220 i~~~~~~~~~~vi~Deay~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~ 297 (435)
|+++|++||+++|+|++|... .+.+ ..... +....+ +++.|+||.++.++. ||+++ +++ +++
T Consensus 161 i~~~~~~~~~~li~D~a~~~~~~~~~~--~~~~~---~~~~~d--~~~~s~sK~~~~~~g--g~~~~---~~~----~~~ 224 (357)
T 3lws_A 161 ISRYCRERGIRLHLDGARLFEMLPYYE--KTAAE---IAGLFD--SIYISFYKGLGGIAG--AILAG---PAA----FCQ 224 (357)
T ss_dssp HHHHHHHTTCEEEEEETTHHHHHHHHT--CCHHH---HHTTSS--EEEEESSSTTCCSSC--EEEEE---CHH----HHH
T ss_pred HHHHHHHcCCEEEEECchhhhhhhhcC--CChHH---HHhcCC--EEEEeccccCCCCce--EEEEc---CHH----HHH
Confidence 999999999999999997521 1111 11112 222222 347899999943332 88864 888 777
Q ss_pred HHHHHhhccccCC--ChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccc-cccCcceeEe
Q 013839 298 QIQQIARAMYGSP--PVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEH-ITNQLGMFCF 374 (435)
Q Consensus 298 ~l~~~~~~~~~~~--~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~g~~~~ 374 (435)
.+.+.......+. ....+.++...|. ++.+. .+++.++++.+.+.|++++. +.+ ..+.+++|+|
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~---------~~~~~-~~~~~~~~~~l~~~L~~~~g---~~~~~~~~~~~~~~ 291 (357)
T 3lws_A 225 TARIWKRRYGGDLISLYPYIVSADYYYE---------LRKDR-MGQYYEQAKQLAEQFNALPG---VHTTPEVPVSNMFH 291 (357)
T ss_dssp HHHHHHHHTTCCCSCCHHHHHHHHHHHH---------HHTTC-HHHHHHHHHHHHHHHHTSTT---EEEESSSCSSSEEE
T ss_pred HHHHHHHHhcCCcccchHHHHHHHHHHH---------HHHHH-HHHHHHHHHHHHHHHHhCCC---CeeccCCCcceEEE
Confidence 7766543322222 2232333323332 22222 33456778888999988732 455 3456677888
Q ss_pred cCC--C----HHHHHHHhhhccEEEeCCC---------cEEecc----CCCCcHHHHHHHHHHHH
Q 013839 375 SGL--T----PYQVDRLAKEFHIYMTQDG---------RISMAG----VTTGNVNYLANAIHEVT 420 (435)
Q Consensus 375 ~~~--~----~~~~~~ll~~~gI~i~pgg---------Ris~~~----~~~e~i~~~~~~l~~~l 420 (435)
+.+ . .+.+.+.++++||.+.||. |++++. .+.+++++++++|++++
T Consensus 292 ~~~~~~~~~~~~~~~~~l~~~Gi~v~~g~~~~~~~~~~r~~i~~~~~~~~~~~l~~al~~l~~al 356 (357)
T 3lws_A 292 LHFDGQAADISPKLEQVQEETGLGFVGYLVDKDGYCSTEISVGDAYGELDQQTRDAGFARLRQAF 356 (357)
T ss_dssp EEEESCHHHHHHHHHHHHHHHCEESCSCCEECSSEEEEEEEBCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred EEecCChHHHHHHHHHHHHhcCeEEecccccCCCceEEEEEecchhhhcCHHHHHHHHHHHHHhc
Confidence 855 2 3455555677999999872 777642 25667777888777653
No 147
>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3
Probab=99.94 E-value=9.5e-26 Score=223.40 Aligned_cols=231 Identities=13% Similarity=0.044 Sum_probs=160.5
Q ss_pred CCeeeeecc-eecCCCCCcccchHHHHHHHH---hcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCC
Q 013839 50 PYKINLGVG-AYRDDKGRPVVLQCVREAEAK---IAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALS 125 (435)
Q Consensus 50 ~~~i~l~~g-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~g 125 (435)
.++|.|+.| +| +. +.++++.+.+... ........|. ..|.+ +++++++++....+. ++++ ++.+
T Consensus 89 ~~~i~l~~g~~~-~~---~~~~~i~~a~~~~~~~~~~~~~~~Y~-~~g~~-~~~~l~~~la~~~g~----~~~i--~~~s 156 (464)
T 1ibj_A 89 TLLVNLDNKFDP-FD---AMSTPLYQTATFKQPSAIENGPYDYT-RSGNP-TRDALESLLAKLDKA----DRAF--CFTS 156 (464)
T ss_dssp HHHTCCCCSSCT-TC---CSSCCCCCCSBCCCSSSSCCCSCSBT-TTCCH-HHHHHHHHHHHHHTC----SEEE--EESS
T ss_pred CeEEECCCCCCC-CC---CCCccHHhhhhhhhhcccccCCcccc-CCCCH-HHHHHHHHHHHHhCC----CeEE--EECC
Confidence 467888887 53 33 3333332222211 1122245576 35655 566666665222111 2444 6888
Q ss_pred chhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHH----HhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEe
Q 013839 126 GTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNI----WRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLH 201 (435)
Q Consensus 126 g~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~ 201 (435)
|++|+.++ + .++.+||+|++++|+|..+... ++..|++++.++. .|++++++++. ++++++++
T Consensus 157 Gt~al~~~--l-~~~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~-------~d~~~l~~~i~---~~tk~v~l 223 (464)
T 1ibj_A 157 GMAALSAV--T-HLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNT-------TKLDEVAAAIG---PQTKLVWL 223 (464)
T ss_dssp HHHHHHHH--H-TTSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECT-------TSHHHHHHHCC---SSEEEEEE
T ss_pred HHHHHHHH--H-HHhCCCCEEEEECCCchhHHHHHHHHHHHcCCEEEEeCC-------CCHHHHHHHhc---cCceEEEE
Confidence 88888766 4 4678999999999999988764 4567888888875 17899999997 67899999
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccc-cCCccc
Q 013839 202 PSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGL-YGHRVG 280 (435)
Q Consensus 202 ~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~-~G~RvG 280 (435)
++|+||||.+++ +++|.++|++||+++|+|++|....... ++ + .+.++++.|+||.++. .|+|+|
T Consensus 224 ~~p~NptG~v~~---l~~i~~la~~~gi~livDea~~~g~~~~------~~----~-~~~div~~S~sK~~~g~~Gl~~G 289 (464)
T 1ibj_A 224 ESPTNPRQQISD---IRKISEMAHAQGALVLVDNSIMSPVLSR------PL----E-LGADIVMHSATKFIAGHSDVMAG 289 (464)
T ss_dssp CSSCTTTCCCCC---HHHHHHHHHTTTCEEEEECTTTCTTTCC------GG----G-TTCSEEEEETTTTTTCSSCCCCE
T ss_pred eCCCCCCCEeec---HHHHHHHHHHcCCEEEEECCCcccccCC------hh----h-cCCEEEEECCcccccCCCCCcEE
Confidence 999999999985 6799999999999999999986432110 11 1 2578999999998864 489999
Q ss_pred EEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCCh
Q 013839 281 CLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDP 325 (435)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~ 325 (435)
|+++ ++++ +++.+.........+.+.+.|.++...+.+.
T Consensus 290 ~l~~--~~~~----l~~~l~~~~~~~g~~~~~~~~~a~~~al~~~ 328 (464)
T 1ibj_A 290 VLAV--KGEK----LAKEVYFLQNSEGSGLAPFDCWLCLRGIKTM 328 (464)
T ss_dssp EEEE--CSHH----HHHHHHHHHHHTTCBCCHHHHHHHHHHHTTH
T ss_pred EEEE--ChHH----HHHHHHHHHHhcCCCCCHHHHHHHHhchhhH
Confidence 9974 2357 7777776554444567788888887787653
No 148
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}
Probab=99.94 E-value=1.8e-25 Score=221.72 Aligned_cols=340 Identities=11% Similarity=0.040 Sum_probs=210.1
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCC--CC-CCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecC
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSE--FL-ESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQAL 124 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~ 124 (435)
++...+|++.|.+...-++. ++++++++.+++.... .. .|.. ....++++.+++++ +. .++++. +++
T Consensus 48 ~g~~~lD~~~~~~~~~lG~~-~~~v~~a~~~~~~~~~~~~~~~~~~-~~~~~l~~~la~~~-~~-----~~~~v~--~~~ 117 (449)
T 3a8u_X 48 KGRKVYDSLSGLWTCGAGHT-RKEIQEAVAKQLSTLDYSPGFQYGH-PLSFQLAEKITDLT-PG-----NLNHVF--FTD 117 (449)
T ss_dssp TCCEEEETTHHHHTCTTCBS-CHHHHHHHHHHTTTCSCCCSSSCCC-HHHHHHHHHHHTTS-ST-----TEEEEE--EES
T ss_pred CCCEEEECCccHhhccCCCC-CHHHHHHHHHHHHhCCCccccccCC-HHHHHHHHHHHHhC-CC-----CCCEEE--EcC
Confidence 45678899877642222222 4445555555554321 11 2221 12234444554443 21 245777 999
Q ss_pred CchhHHHHHHHHHHH-h-----CCCCEEEEcCCCChhhH-HHHhhCCC------------CeeeeeecC--CCC-CCcC-
Q 013839 125 SGTGACRLFAEFQRR-F-----HPESHIYFPDPTWSNHH-NIWRDAQI------------PERTYHYYD--PDS-KSLD- 181 (435)
Q Consensus 125 gg~~a~~~~~~~~~~-~-----~~gd~Vlv~~p~y~~~~-~~~~~~g~------------~~~~v~~~~--~~~-~~~d- 181 (435)
||++|+.++...+.. . .+||+|++.+|+|.++. ..+...|. .+..++... ..+ .++|
T Consensus 118 ggsea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~ 197 (449)
T 3a8u_X 118 SGSECALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMP 197 (449)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSSC
T ss_pred cHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCccccCccccCCh
Confidence 999999988432211 1 16799999999998764 34444331 233333210 011 1356
Q ss_pred -------hHhHHHHhhcCC-CCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHH
Q 013839 182 -------FAALMDDIKNAP-DSSFFLLHPSAHNPTGV-DPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAI 252 (435)
Q Consensus 182 -------~e~l~~~i~~~~-~~~~~v~~~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~ 252 (435)
+++|++++++.. +++++++++..+||||. ..+++.+++|.++|++||+++|+||+|.+|+..+. ...+
T Consensus 198 ~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~---~~~~ 274 (449)
T 3a8u_X 198 KEGGIALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGS---MFGA 274 (449)
T ss_dssp SSSHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccCc---chhh
Confidence 899999987432 34566666555678997 55799999999999999999999999987765431 1122
Q ss_pred HHhhhcCCeEEEEecccccccccC-CcccEEEEEecChhHHHHHHHHHHHHh---------hccccCCChhHHHHHHHHh
Q 013839 253 RIFLEDEHLIGCAQSYAKSMGLYG-HRVGCLSILCVDSKQAAAIRSQIQQIA---------RAMYGSPPVHGILLVATIL 322 (435)
Q Consensus 253 ~~~~~~~~~~i~~~s~SK~~g~~G-~RvG~~~~~~~~~~~~~~~~~~l~~~~---------~~~~~~~~~~~q~~~~~~l 322 (435)
..+ +...+++ |+||.++ .| +|+||+++ +++ +++.+.... ...+.+.+.+++.++.++|
T Consensus 275 ~~~-~~~~di~---s~sK~l~-~G~~~~G~~~~---~~~----~~~~l~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal 342 (449)
T 3a8u_X 275 DSF-GVTPDLM---CIAKQVT-NGAIPMGAVIA---STE----IYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAAL 342 (449)
T ss_dssp HHH-TCCCSEE---EECGGGG-TTSSCCEEEEE---EHH----HHHHHHTCSSCTTSCSSCCCCTTTTCHHHHHHHHHHH
T ss_pred hhc-CCCCCEE---EEccccc-CCCCceEEEEE---CHH----HHHHhhccCcccccccccccCCCcccHHHHHHHHHHH
Confidence 222 2222222 8899998 58 99999864 677 777776531 1234566788887777777
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-CCCCccccccCcceeEecCCC-----H-----HHHHHHhhhccE
Q 013839 323 SDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLG-SSLNWEHITNQLGMFCFSGLT-----P-----YQVDRLAKEFHI 391 (435)
Q Consensus 323 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~~~g~~~~~~~~-----~-----~~~~~ll~~~gI 391 (435)
+... + +...++++++++.+.+.|++++ .+ .+.... ..|.|+|+.+. . ++...++ ++||
T Consensus 343 ~~~~------~--~~~~~~~~~~~~~l~~~L~~l~~~~-~~~~~~-~~g~~~~i~~~~~~~~~~~~~~~~~~~l~-~~Gv 411 (449)
T 3a8u_X 343 CLLQ------K--ENLVQSVAEVAPHFEKALHGIKGAK-NVIDIR-NFGLAGAIQIAPRDGDAIVRPFEAGMALW-KAGF 411 (449)
T ss_dssp HHHH------H--TTHHHHHHHHHHHHHHHHHTTTTST-TEEEEE-EETTEEEEEECCBTTBSSHHHHHHHHHHH-HHTE
T ss_pred HHHH------h--cCHHHHHHHHHHHHHHHHHHHhcCC-CeEEEe-eeEEEEEEEEecCcccccccHHHHHHHHH-HCCc
Confidence 5321 1 2456777788888888887753 21 111222 34567776441 1 3445554 5799
Q ss_pred EEeCCC---cEEec-cCCCCcHHHHHHHHHHHHHhh
Q 013839 392 YMTQDG---RISMA-GVTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 392 ~i~pgg---Ris~~-~~~~e~i~~~~~~l~~~l~~~ 423 (435)
.+.++| ||++. ..+++++++++++|+++++++
T Consensus 412 ~v~~~g~~iRis~~~~~t~~~i~~~l~~l~~~l~~~ 447 (449)
T 3a8u_X 412 YVRFGGDTLQFGPTFNSKPQDLDRLFDAVGEVLNKL 447 (449)
T ss_dssp ECEEETTEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred EEecCCCEEEEECCCcCCHHHHHHHHHHHHHHHHHH
Confidence 999975 88853 348999999999999988654
No 149
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*
Probab=99.94 E-value=9.6e-26 Score=223.65 Aligned_cols=343 Identities=8% Similarity=-0.018 Sum_probs=215.7
Q ss_pred CCC--CeeeeecceecCCCCCcccchHHHHHHHHhcCC--CCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEec
Q 013839 48 PSP--YKINLGVGAYRDDKGRPVVLQCVREAEAKIAGS--EFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQA 123 (435)
Q Consensus 48 ~~~--~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t 123 (435)
+++ ..||+..|...+.-|. .++.+++++.+++... ....+.+.....+|++.+++++ +.. .+++. ++
T Consensus 71 dG~~~~ylD~~s~~~~~~lGh-~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~L~e~la~~~-~~~-----~~~v~--~~ 141 (457)
T 3tfu_A 71 DGQPIEVLDAMSSWWTAIHGH-GHPALDQALTTQLRVMNHVMFGGLTHEPAARLAKLLVDIT-PAG-----LDTVF--FS 141 (457)
T ss_dssp TTEEEEEEETTHHHHTCTTCB-TCHHHHHHHHHHHHHCSCCCSSSEECHHHHHHHHHHHHHS-STT-----EEEEE--EE
T ss_pred CCCeeEEEECCCcHhhhccCC-CCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhC-CCC-----cCEEE--Ee
Confidence 456 7899988853222232 2334444444444321 1111223344567777777775 221 34777 99
Q ss_pred CCchhHHHHHHHHHHHh-----CCC-CEEEEcCCCChhhHHHHhhCC--------------CCeeeeeecCCCCCCcChH
Q 013839 124 LSGTGACRLFAEFQRRF-----HPE-SHIYFPDPTWSNHHNIWRDAQ--------------IPERTYHYYDPDSKSLDFA 183 (435)
Q Consensus 124 ~gg~~a~~~~~~~~~~~-----~~g-d~Vlv~~p~y~~~~~~~~~~g--------------~~~~~v~~~~~~~~~~d~e 183 (435)
+||++|++++..+.... .+| ++|++.+++|.++.......+ .....++.........|++
T Consensus 142 ~sGseA~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~ 221 (457)
T 3tfu_A 142 DSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSA 221 (457)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECCCCSSCCHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCCCcccCHHHHH
Confidence 99999999985333221 145 589999999977654433331 1233333311111224889
Q ss_pred hHHHHhhcCCCCcEEEEeCC-CCCCCCCCC-CHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCe
Q 013839 184 ALMDDIKNAPDSSFFLLHPS-AHNPTGVDP-TEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHL 261 (435)
Q Consensus 184 ~l~~~i~~~~~~~~~v~~~~-p~NPtG~~~-~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~ 261 (435)
+|++++++.++++++|++++ ++||+|..+ +++.+++|.++|++||+++|+||+|.+|+..+. ......+ +...+
T Consensus 222 ~le~~l~~~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr~G~---~~a~~~~-~~~pd 297 (457)
T 3tfu_A 222 AFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGA---LFAADHA-GVSPD 297 (457)
T ss_dssp HHHHHHHHHGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSTHHHH-TCCCS
T ss_pred HHHHHHHhCCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCccccc---hhHhHhc-CCCce
Confidence 99998875445678888888 899999877 778899999999999999999999998876532 1122222 22223
Q ss_pred EEEEecccccccccC-CcccEEEEEecChhHHHHHHHHHHHH-----hhccccCCChhHHHHHHHHhCChhhHHHHHHHH
Q 013839 262 IGCAQSYAKSMGLYG-HRVGCLSILCVDSKQAAAIRSQIQQI-----ARAMYGSPPVHGILLVATILSDPNLKSLWIDEV 335 (435)
Q Consensus 262 ~i~~~s~SK~~g~~G-~RvG~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~ 335 (435)
++ ||||.++ .| +|+||+++ +++ +++.+... ....+.+.+.+++.++.++|+... +
T Consensus 298 ii---t~sK~l~-gG~~~lG~v~~---~~~----i~~~~~~~~~~~~~~~~t~~~n~~a~aaa~aaL~~~~------~-- 358 (457)
T 3tfu_A 298 IM---CVGKALT-GGYLSLAATLC---TAD----VAHTISAGAAGALMHGPTFMANPLACAVSVASVELLL------G-- 358 (457)
T ss_dssp EE---EECGGGG-TTSSCCEEEEE---EHH----HHHHHHHSSSCSCCCCCTTTTCHHHHHHHHHHHHHHH------T--
T ss_pred EE---EEChhhh-CCCcceEEEEE---cHH----HHHHhhccCCCceeEecCCCcCHHHHHHHHHHHHHHh------h--
Confidence 33 8999887 45 79999974 777 77777521 223456778888888877775211 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCC----CHHHH-HHHhhhccEEEeCCC---cEEec-cCCC
Q 013839 336 KIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL----TPYQV-DRLAKEFHIYMTQDG---RISMA-GVTT 406 (435)
Q Consensus 336 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~----~~~~~-~~ll~~~gI~i~pgg---Ris~~-~~~~ 406 (435)
+...++++++.+++.+.|+++.....+....+. |.|.++.+ +...+ ..+ .++||.+.|.| ||++. ..++
T Consensus 359 ~~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr~~-G~~~~i~l~~~~~~~~~~~~l-~~~Gv~v~~~~~~lRi~p~~~~t~ 436 (457)
T 3tfu_A 359 QDWRTRITELAAGLTAGLDTARALPAVTDVRVC-GAIGVIECDRPVDLAVATPAA-LDRGVWLRPFRNLVYAMPPYICTP 436 (457)
T ss_dssp SCHHHHHHHHHHHHHHHHGGGGGSTTEEEEEEC-SSCEEEEESSCCCHHHHHHHH-HHTTEECCCBTTEEEECCCTTCCH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCCeeeeecC-CeEEEEEECCcccHHHHHHHH-HHCCeEEEecCCEEEEECCCCCCH
Confidence 244566667777777777765311112333344 44555533 34444 555 45799999987 88753 2388
Q ss_pred CcHHHHHHHHHHHHHhhh
Q 013839 407 GNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 407 e~i~~~~~~l~~~l~~~~ 424 (435)
+++++++++|++++++..
T Consensus 437 eei~~~l~~L~~~l~~~~ 454 (457)
T 3tfu_A 437 AEITQITSAMVEVARLVG 454 (457)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999999999999998654
No 150
>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}
Probab=99.94 E-value=5.5e-27 Score=228.86 Aligned_cols=286 Identities=15% Similarity=0.038 Sum_probs=181.4
Q ss_pred ccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHh----CCCC-EEEEcCCCChhhHHHHh---hCC
Q 013839 93 VSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRF----HPES-HIYFPDPTWSNHHNIWR---DAQ 164 (435)
Q Consensus 93 g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~----~~gd-~Vlv~~p~y~~~~~~~~---~~g 164 (435)
...++++.+++++ +.. +++++ +++||++|+.++ +.+++ .+|| +|+++.++|+.+...+. ..|
T Consensus 64 ~~~~l~~~la~~~-~~~-----~~~v~--~~~g~t~al~~~--~~~l~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~~~~g 133 (400)
T 3vax_A 64 GVERAREYLASTV-SAE-----PDELI--FTSGATESNNIA--LLGLAPYGERTGRRHIITSAIEHKAVLEPLEHLAGRG 133 (400)
T ss_dssp HHHHHHHHHHHHT-TCC-----GGGEE--EESCHHHHHHHH--HHTTHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHc-CCC-----CCcEE--EeCCHHHHHHHH--HHHHHHhhccCCCCEEEECccccHhHHHHHHHHHhcC
Confidence 3567888888876 332 45787 899999999988 55555 7999 99999999988766554 369
Q ss_pred CCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCC
Q 013839 165 IPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGD 244 (435)
Q Consensus 165 ~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~ 244 (435)
++++.++. ++++.+|+++|++++. ++++++++++|+||||..++ +++|.++|++||+++|+|++|......
T Consensus 134 ~~~~~v~~--~~~~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~~~- 204 (400)
T 3vax_A 134 FEVDFLTP--GPSGRISVEGVMERLR---PDTLLVSLMHVNNETGVIQP---VAELAQQLRATPTYLHVDAAQGYGKVP- 204 (400)
T ss_dssp CEEEEECC--CTTCCCCHHHHHTTCC---TTEEEEECCSBCTTTCBBCC---HHHHHHHHTTSSCEEEEECTTTTTTSG-
T ss_pred CeEEEEcc--CCCCCcCHHHHHHhcC---CCceEEEEECCCCCceeeCc---HHHHHHHHHhcCCEEEEEhhhhcCCCC-
Confidence 99999987 3467899999999987 67899999999999999987 468999999999999999998632211
Q ss_pred CcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEE-EEecChhHH---HHHHHHHH---HHhhccccCCChhHHHH
Q 013839 245 LDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLS-ILCVDSKQA---AAIRSQIQ---QIARAMYGSPPVHGILL 317 (435)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~-~~~~~~~~~---~~~~~~l~---~~~~~~~~~~~~~~q~~ 317 (435)
.. + ... .++++.|+||.+|.+| +|+++ + .+++.. ..+...+. ........+++...+.+
T Consensus 205 -----~~---~-~~~-~d~~~~s~~K~~g~~g--~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 270 (400)
T 3vax_A 205 -----GD---L-TTP-IDMISISGHKIGAPKG--VGALVTR--RREEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMG 270 (400)
T ss_dssp -----GG---G-GSC-CSEEEEETGGGTSCSS--CEEEEEC--BCSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHH
T ss_pred -----cC---h-hhc-CcEEEEeHHHhCCCCc--eEEEEEe--cchhccccccccCceecCCCceeeeecCCCCHHHHHH
Confidence 01 1 111 5688999999887666 56664 3 231100 00111110 00012233456666666
Q ss_pred HHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCc---ceeEec---CCCHHHHHHHhhhccE
Q 013839 318 VATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQL---GMFCFS---GLTPYQVDRLAKEFHI 391 (435)
Q Consensus 318 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~---g~~~~~---~~~~~~~~~ll~~~gI 391 (435)
+..++... .+.+++.+++++++++++.+.|+ .+ ++.+..+++ +.++++ +.+.+.+.+.|. +||
T Consensus 271 ~~~al~~~------~~~~~~~~~~~~~~~~~l~~~L~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~gi 339 (400)
T 3vax_A 271 LAEAAKIF------EAEHAQWQVAAQDLRSRLLAGLA-ST---SFQVNGDQDHVVPHILNLSFEDVDAEAFLVTLK-DLV 339 (400)
T ss_dssp HHHHHHHH------HHSHHHHHHHHHHHHHHHHHHHT-TT---TCEECSCTTSBCTTEEEEECTTCCHHHHHHHHH-HHH
T ss_pred HHHHHHHH------HhhHHHHHHHHHHHHHHHHHhhC-CC---CEEEeCCcccCCCCEEEEEeCCCCHHHHHHHHh-cCc
Confidence 65665422 24567888999999999999998 43 244544443 223322 446666655556 899
Q ss_pred EEeCC-------------------------C--cEEe-cc-CCCCcHHHHHHHHHHHHHh
Q 013839 392 YMTQD-------------------------G--RISM-AG-VTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 392 ~i~pg-------------------------g--Ris~-~~-~~~e~i~~~~~~l~~~l~~ 422 (435)
.+.+| + ||++ +. .+++++++++++|++++++
T Consensus 340 ~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~ 399 (400)
T 3vax_A 340 AVATGSASTSASFTPSHVLRAMGLPEEAASKSLRFSWTPGQATDLDVEELARGVAKLKPS 399 (400)
T ss_dssp HHTTTTEEEEEEECCHHHHHTTTCCHHHHTSEEEEEEEEC--------------------
T ss_pred EEEecccccCCCCCccHHHHHcCCCccccCceEEEEccCCCCCHHHHHHHHHHHHHHhcc
Confidence 88774 4 9998 53 3789999999999988753
No 151
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Probab=99.94 E-value=6.8e-25 Score=221.16 Aligned_cols=332 Identities=14% Similarity=0.054 Sum_probs=215.0
Q ss_pred ccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCC----
Q 013839 68 VVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPE---- 143 (435)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~g---- 143 (435)
.+.+.+.++...........|....+..++++++++++....+.+..++++.+++++||++|+.++ +.++..+|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~a--l~a~~~~g~~~~ 188 (514)
T 3mad_A 111 HHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLA--MKTYRDWARATK 188 (514)
T ss_dssp HHHHHHHHHHHHHTTCCTTCTTTCHHHHHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHH--HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhcCCcccccChHHHHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHH--HHHHHHHhhhhc
Confidence 334455555554443324445555666777777766653222222223677334899999999988 55555555
Q ss_pred ----CEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHH
Q 013839 144 ----SHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWRE 219 (435)
Q Consensus 144 ----d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~ 219 (435)
|+|+++.|+|..+...++..|++++.+++. +++.+|+++|+++++ +++++|++++|+||||.+.+ +++
T Consensus 189 g~~~d~Vi~~~~~~~~~~~~~~~~G~~v~~v~~~--~~~~~d~~~Le~~i~---~~~~~v~~~~~~nptG~~~~---l~~ 260 (514)
T 3mad_A 189 GITAPEAVVPVSAHAAFDKAAQYFGIKLVRTPLD--ADYRADVAAMREAIT---PNTVVVAGSAPGYPHGVVDP---IPE 260 (514)
T ss_dssp CCSSCEEEEETTSCTHHHHHHHHHTCEEEEECBC--TTSCBCHHHHHHHCC---TTEEEEEEETTCTTTCCCCC---HHH
T ss_pred CCCCCeEEEeCccchHHHHHHHHcCCeeEEeeeC--CCCCCCHHHHHHHhc---cCCEEEEEeCCCCCCccccC---HHH
Confidence 999999999999999999999999999983 368899999999997 67899999999999999977 569
Q ss_pred HHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHh-hhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHH
Q 013839 220 ISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIF-LEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQ 298 (435)
Q Consensus 220 i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~ 298 (435)
|.++|++||+++|+|++|.++..........+...+ ....+.++++.|++|.++ .|.++||+++ .++. + ..
T Consensus 261 i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~~~~~~g~d~~~~s~~K~l~-~~~~~g~~~~--~~~~----~-~~ 332 (514)
T 3mad_A 261 IAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGY-GAKGTSVILY--RRPD----L-LH 332 (514)
T ss_dssp HHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCCSTTSTTCCEEEECTTTTTC-CCSSCEEEEE--SSHH----H-HT
T ss_pred HHHHHHHhCCeEEEecccccccchhHHhcCCCCCcccccCCCCcEEEECchhccC-CCCCeEEEEE--eCHH----H-hc
Confidence 999999999999999999876531000000000000 012245788899999965 6788999964 3433 2 21
Q ss_pred HHHHhhc----------c-ccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccc
Q 013839 299 IQQIARA----------M-YGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITN 367 (435)
Q Consensus 299 l~~~~~~----------~-~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 367 (435)
....... . ..+.+.....++..++..-+ ....++..++..++++++.+.|++++. +.+..+
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~-----~~~~~~~~~~~~~~~~~l~~~L~~~~g---~~~~~~ 404 (514)
T 3mad_A 333 YQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLG-----EEGYLDATRRILQAADRLKAGVRAIPS---LKILGD 404 (514)
T ss_dssp TTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHTSTT---CEESSC
T ss_pred cccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHhhCCC---eEEeCC
Confidence 1110000 0 11222222222222222111 144577788888899999999988632 455555
Q ss_pred CcceeEec--CCCHHHHHHHhhhccEEEeCCC-----cEEecc--CCCCcHHHHHHHHHHHHHhhhh
Q 013839 368 QLGMFCFS--GLTPYQVDRLAKEFHIYMTQDG-----RISMAG--VTTGNVNYLANAIHEVTRSEQE 425 (435)
Q Consensus 368 ~~g~~~~~--~~~~~~~~~ll~~~gI~i~pgg-----Ris~~~--~~~e~i~~~~~~l~~~l~~~~~ 425 (435)
..+++.+. +.+...+.+.|.++||.+...+ |++++. .+++++++++++|++++++...
T Consensus 405 ~~~~~~~~~~~~~~~~l~~~L~~~Gi~v~g~~~~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~~~~~ 471 (514)
T 3mad_A 405 PLWVIAVASDELNIYQVMEEMAGRGWRLNGLHRPPAFHVALTLRHTEPGVVDRFLADLQDAVAQVRA 471 (514)
T ss_dssp CSSEEEEECSSSCHHHHHHHHHTTTCBCEEETTTTEEEEECCGGGGSTTHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHhcCCEeccCCCCCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 55543332 3455555444456799883221 888763 2568999999999999987654
No 152
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A
Probab=99.94 E-value=1.6e-25 Score=220.73 Aligned_cols=329 Identities=10% Similarity=0.068 Sum_probs=207.8
Q ss_pred CCCCeeeeecceecCCCCCc-ccchHHHHHHHHhcCCCC--CCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecC
Q 013839 48 PSPYKINLGVGAYRDDKGRP-VVLQCVREAEAKIAGSEF--LESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQAL 124 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~ 124 (435)
++...+||..|... .... .++.+++.+.+++..... ..| +.....++++.+++++ + .+++. +++
T Consensus 63 ~G~~ylD~~~g~~~--~~lgh~~p~v~~ai~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~-g-------~~~v~--~~~ 129 (433)
T 1z7d_A 63 NDKRYYDFLSAYSS--VNQGHCHPNILNAMINQAKNLTICSRAF-FSVPLGICERYLTNLL-G-------YDKVL--MMN 129 (433)
T ss_dssp TCCEEEESSHHHHT--TTTCBTCHHHHHHHHHHHTTCSCCCTTS-EEHHHHHHHHHHHHHH-T-------CSEEE--EES
T ss_pred CCCEEEEcccchhh--cccCCCCHHHHHHHHHHHHhCCCccCCc-CCHHHHHHHHHHHhhc-C-------CCeEE--EeC
Confidence 45678899888631 1122 334444444555543211 123 2234567778887776 3 24677 899
Q ss_pred CchhHHHHHHHHHHH-------hCCC-CEEEEcCCCChhhHH-HHhhCC------------CCeeeeeecCCCCCCcChH
Q 013839 125 SGTGACRLFAEFQRR-------FHPE-SHIYFPDPTWSNHHN-IWRDAQ------------IPERTYHYYDPDSKSLDFA 183 (435)
Q Consensus 125 gg~~a~~~~~~~~~~-------~~~g-d~Vlv~~p~y~~~~~-~~~~~g------------~~~~~v~~~~~~~~~~d~e 183 (435)
||++|+.++..+... +.+| |+|++++|+|.++.. .+...| ..+..+|. .|++
T Consensus 130 sGseA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~-------~d~~ 202 (433)
T 1z7d_A 130 TGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPY-------DDLE 202 (433)
T ss_dssp SHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECT-------TCHH
T ss_pred CHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEeCC-------CCHH
Confidence 999999998533221 1478 999999999987643 233323 23333332 2899
Q ss_pred hHHHHhhcCCCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeE
Q 013839 184 ALMDDIKNAPDSSFFLLHPSAHNPTGVD-PTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLI 262 (435)
Q Consensus 184 ~l~~~i~~~~~~~~~v~~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (435)
+|+++++. +++++|+++..+|+||.. ++.+++++|.++|++||+++|+||+|.++...+. ......+ +...++
T Consensus 203 ~le~~l~~--~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~---~~~~~~~-~~~~di 276 (433)
T 1z7d_A 203 ALEEELKD--PNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGK---LLCVHHY-NVKPDV 276 (433)
T ss_dssp HHHHHHTS--TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SSGGGGG-TCCCSE
T ss_pred HHHHHhCC--CCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCc---chhhHhc-CCCCCE
Confidence 99999941 567788777667889985 6888999999999999999999999987765431 1111111 222222
Q ss_pred EEEecccccccccC-CcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q 013839 263 GCAQSYAKSMGLYG-HRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADR 341 (435)
Q Consensus 263 i~~~s~SK~~g~~G-~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~ 341 (435)
.|+||.++ +| +|+||+++ +++ +++.+.......+.+.+.+++.++.++|+... + ....++
T Consensus 277 ---~t~sK~l~-~G~~~~G~v~~---~~~----~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~------~--~~~~~~ 337 (433)
T 1z7d_A 277 ---ILLGKALS-GGHYPISAVLA---NDD----IMLVIKPGEHGSTYGGNPLAASICVEALNVLI------N--EKLCEN 337 (433)
T ss_dssp ---EEECGGGG-TTSSCCEEEEE---CHH----HHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHH------H--TTHHHH
T ss_pred ---EEECcccc-CCCCCeEEEEE---CHH----HHhhhccccccccCCCCHHHHHHHHHHHHHHH------h--ccHHHH
Confidence 28999999 89 99999974 777 76666543334456777888887777775321 1 245667
Q ss_pred HHHHHHHHHHHHHhh--CCCCCccccccCcceeEecCC-----CHHHH-HHHhhhccEEEeCCC----cEEecc-CCCCc
Q 013839 342 IQRKRTTLRQNLEKL--GSSLNWEHITNQLGMFCFSGL-----TPYQV-DRLAKEFHIYMTQDG----RISMAG-VTTGN 408 (435)
Q Consensus 342 ~~~~~~~l~~~l~~~--~~~~~~~~~~~~~g~~~~~~~-----~~~~~-~~ll~~~gI~i~pgg----Ris~~~-~~~e~ 408 (435)
++++++++.+.|+++ +.+. +....+ .|.++|+.+ +...+ ..+ .++||.+.|++ |++++. .++++
T Consensus 338 ~~~~~~~l~~~L~~l~~~~~~-~~~~~~-~g~~~~i~~~~~~~~~~~~~~~l-~~~Gv~v~~~~~~~iRi~~~~~~t~e~ 414 (433)
T 1z7d_A 338 AEKLGGPFLENLKRELKDSKI-VRDVRG-KGLLCAIEFKNELVNVLDICLKL-KENGLITRDVHDKTIRLTPPLCITKEQ 414 (433)
T ss_dssp HHHHHHHHHHHHHHHHTTCTT-EEEEEE-ETTEEEEEECTTTCCHHHHHHHH-HHTTEECCEETTTEEEECCCTTCCHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCC-eEEEEe-eeeEEEEEEccChhHHHHHHHHH-HHCCeEEecCCCCEEEEECCcCCCHHH
Confidence 777888888888776 4321 122233 345666533 23444 555 46899999863 887642 48999
Q ss_pred HHHHHHHHHHHHHhhh
Q 013839 409 VNYLANAIHEVTRSEQ 424 (435)
Q Consensus 409 i~~~~~~l~~~l~~~~ 424 (435)
+++++++|++++++..
T Consensus 415 i~~~l~~l~~~l~~~~ 430 (433)
T 1z7d_A 415 LDECTEIIVKTVKFFD 430 (433)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999987653
No 153
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}
Probab=99.94 E-value=6.8e-25 Score=218.65 Aligned_cols=349 Identities=11% Similarity=0.031 Sum_probs=222.9
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCch
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~ 127 (435)
+++..||+..|.....-|. .++.+++++.+++... .+.+ ...+..+.++++++++..... ...+++. +++||+
T Consensus 52 ~G~~ylD~~s~~~~~~lGh-~~p~v~~A~~~~l~~~-~~~~-~~~~~~~~~~~la~~l~~~~~--~~~~~v~--~~~sGs 124 (476)
T 3i5t_A 52 DGRRLIDGPAGMWCAQVGY-GRREIVDAMAHQAMVL-PYAS-PWYMATSPAARLAEKIATLTP--GDLNRIF--FTTGGS 124 (476)
T ss_dssp TCCEEEETTHHHHTCTTCB-CCHHHHHHHHHHHHHC-CCCC-TTTCBCHHHHHHHHHHHTTSS--TTCCEEE--EESSHH
T ss_pred CCCEEEECCCchhhccCCC-CCHHHHHHHHHHHHhc-cCcc-cCccCCHHHHHHHHHHHhcCC--CCcCEEE--EeCchH
Confidence 5678999998854232232 2444555555555421 2212 114556777888888754432 1245777 999999
Q ss_pred hHHHHHHHHHHHh------CCCCEEEEcCCCChhhHHHHhhCCCCee-------------eeeecC-CCCCCcC------
Q 013839 128 GACRLFAEFQRRF------HPESHIYFPDPTWSNHHNIWRDAQIPER-------------TYHYYD-PDSKSLD------ 181 (435)
Q Consensus 128 ~a~~~~~~~~~~~------~~gd~Vlv~~p~y~~~~~~~~~~g~~~~-------------~v~~~~-~~~~~~d------ 181 (435)
+|+..+..+.... ..+++|++.+|+|.++.......+.... .++... ..++..|
T Consensus 125 eA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 204 (476)
T 3i5t_A 125 TAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLD 204 (476)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCcccccCCCchHHHHH
Confidence 9999985433222 3458999999999888655444333221 222100 0001122
Q ss_pred --hHhHHHHhhcC-CCCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhh
Q 013839 182 --FAALMDDIKNA-PDSSFFLLHPSAHNPTGV-DPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLE 257 (435)
Q Consensus 182 --~e~l~~~i~~~-~~~~~~v~~~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~ 257 (435)
+++|++.+.+. ++++++|++++++|++|. ..+++.+++|.++|++||+++|+||+|.+|+..+. .+......+
T Consensus 205 ~~~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr~G~---~~~~~~~~~ 281 (476)
T 3i5t_A 205 DLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGE---WFASEKVFG 281 (476)
T ss_dssp HHHHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SCHHHHTTC
T ss_pred HHHHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccccC---ceeeecccC
Confidence 77888888642 245788888888899996 77899999999999999999999999998876541 123321112
Q ss_pred cCCeEEEEecccccccccC-CcccEEEEEecChhHHHHHHHHHHHH-------hhccccCCChhHHHHHHHHhCChhhHH
Q 013839 258 DEHLIGCAQSYAKSMGLYG-HRVGCLSILCVDSKQAAAIRSQIQQI-------ARAMYGSPPVHGILLVATILSDPNLKS 329 (435)
Q Consensus 258 ~~~~~i~~~s~SK~~g~~G-~RvG~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~q~~~~~~l~~~~l~~ 329 (435)
...+++ ++||.++ .| +|+|++++ +++ +++.+... ....+.+.+++++.++.++|+...
T Consensus 282 v~pdi~---t~sK~l~-~G~~plg~v~~---~~~----i~~~~~~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~--- 347 (476)
T 3i5t_A 282 VVPDII---TFAKGVT-SGYVPLGGLAI---SEA----VLARISGENAKGSWFTNGYTYSNQPVACAAALANIELME--- 347 (476)
T ss_dssp CCCSEE---EECGGGG-TTSSCCEEEEE---CHH----HHHTTSGGGCTTCEECCCCTTTTCHHHHHHHHHHHHHHH---
T ss_pred CCcchh---hhhhhhc-CCCcCeEEEEE---CHH----HHHHHhcCCcccccccccCCCCcCHHHHHHHHHHHHHHH---
Confidence 222232 6899998 58 99999974 888 88777653 223456778888888888875321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCC--C-------------HHHH-HHHhhhccEEE
Q 013839 330 LWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL--T-------------PYQV-DRLAKEFHIYM 393 (435)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~--~-------------~~~~-~~ll~~~gI~i 393 (435)
+ +...++++++.+++++.|+.+.....+...++.+. |+++.+ + ...+ ..+ .++||.+
T Consensus 348 ---~--~~~~~~~~~~~~~l~~~L~~l~~~~~v~~v~~~G~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v 420 (476)
T 3i5t_A 348 ---R--EGIVDQAREMADYFAAALASLRDLPGVAETRSVGL-VGCVQCLLDPTRADGTAEDKAFTLKIDERC-FELGLIV 420 (476)
T ss_dssp ---H--TTHHHHHHHHHHHHHHHHHTTTTSTTEEEEEEETT-EEEEEECCC-----CCHHHHHHHHHHHHHH-HHTTEEC
T ss_pred ---h--HHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCc-eeEEEEecCccccccccchhHHHHHHHHHH-HHCCCEE
Confidence 1 34566777777788888876531112334445555 433322 1 2233 445 4679999
Q ss_pred eCCC---cEEec-cCCCCcHHHHHHHHHHHHHhhhhhh
Q 013839 394 TQDG---RISMA-GVTTGNVNYLANAIHEVTRSEQETA 427 (435)
Q Consensus 394 ~pgg---Ris~~-~~~~e~i~~~~~~l~~~l~~~~~~~ 427 (435)
.|.| ||+.. ..+++++++++++|++++++...+.
T Consensus 421 ~~~g~~iRi~p~l~~t~e~i~~~l~~l~~~l~~~~~~~ 458 (476)
T 3i5t_A 421 RPLGDLCVISPPLIISRAQIDEMVAIMRQAITEVSAAH 458 (476)
T ss_dssp EEETTEEEECCCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EecCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9876 88732 3489999999999999998766443
No 154
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*
Probab=99.94 E-value=5.3e-25 Score=217.40 Aligned_cols=327 Identities=13% Similarity=0.087 Sum_probs=214.3
Q ss_pred CCCCeeeeecceecCCCCCc-ccchHHHHHHHHhcCCCC--CCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecC
Q 013839 48 PSPYKINLGVGAYRDDKGRP-VVLQCVREAEAKIAGSEF--LESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQAL 124 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~ 124 (435)
++...+||..|... .... .++.+++++.+++..... ..| +.....++++.+++++ + .+++. +++
T Consensus 74 ~g~~ylD~~sg~~~--~~lgh~~p~v~~Ai~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~-g-------~~~v~--~~~ 140 (439)
T 2oat_A 74 EGRKYFDFLSSYSA--VNQGHCHPKIVNALKSQVDKLTLTSRAF-YNNVLGEYEEYITKLF-N-------YHKVL--PMN 140 (439)
T ss_dssp TCCEEEESSGGGGT--TTTCBTCHHHHHHHHHHHTTCSCCCTTS-EESSHHHHHHHHHHHH-T-------CSEEE--EES
T ss_pred CCCEEEEccCCccc--ccCCCCCHHHHHHHHHHHHhcCcccCcc-CCHHHHHHHHHHHHhc-C-------CCEEE--EeC
Confidence 45678899888631 1112 334444544555543211 123 2234578888888887 3 24677 899
Q ss_pred CchhHHHHHHHHHHHh-------CCC-CEEEEcCCCChhhH-HHHhhCC------------CCeeeeeecCCCCCCcChH
Q 013839 125 SGTGACRLFAEFQRRF-------HPE-SHIYFPDPTWSNHH-NIWRDAQ------------IPERTYHYYDPDSKSLDFA 183 (435)
Q Consensus 125 gg~~a~~~~~~~~~~~-------~~g-d~Vlv~~p~y~~~~-~~~~~~g------------~~~~~v~~~~~~~~~~d~e 183 (435)
||++|+.++..+...+ .+| |+|++.+|+|.+.. ..+...| .+++.+|. .|++
T Consensus 141 sGseA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~-------~d~~ 213 (439)
T 2oat_A 141 TGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPY-------NDLP 213 (439)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHHTTSCSCCTTEEEECS-------SCHH
T ss_pred CHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhcccCCCCCCCCeEEeCC-------CCHH
Confidence 9999999885332211 467 89999999997764 3444434 23444432 2899
Q ss_pred hHHHHhhcCCCCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeE
Q 013839 184 ALMDDIKNAPDSSFFLLHPSAHNPTGV-DPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLI 262 (435)
Q Consensus 184 ~l~~~i~~~~~~~~~v~~~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (435)
+|+++++. +++++++++..+|+||. .++.+++++|.++|++||+++|+||+|.++...+. ...... .+...++
T Consensus 214 ~le~~l~~--~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~---~~~~~~-~~~~~Di 287 (439)
T 2oat_A 214 ALERALQD--PNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGR---WLAVDY-ENVRPDI 287 (439)
T ss_dssp HHHHHTTS--TTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SSGGGG-GTCCCSE
T ss_pred HHHHHhCC--CCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCc---chhHHH-hCCCCcE
Confidence 99999852 46777777666778997 56899999999999999999999999987765431 111111 1221222
Q ss_pred EEEecccccccccC-CcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHH
Q 013839 263 GCAQSYAKSMGLYG-HRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADR 341 (435)
Q Consensus 263 i~~~s~SK~~g~~G-~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~ 341 (435)
+ |+||.++ .| +|+||+++ +++ +++.+.......+.+.+.+++.++.++|+... + +...++
T Consensus 288 ~---t~sK~l~-~G~~~~G~v~~---~~~----~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~------~--~~~~~~ 348 (439)
T 2oat_A 288 V---LLGKALS-GGLYPVSAVLC---DDD----IMLTIKPGEHGSTYGGNPLGCRVAIAALEVLE------E--ENLAEN 348 (439)
T ss_dssp E---EECGGGG-TTSSCCEEEEE---CHH----HHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHH------H--TTHHHH
T ss_pred E---Eeccccc-CCCCCeEEEEE---CHH----HHhccCCCCcccCCCcCHHHHHHHHHHHHHHh------h--hhHHHH
Confidence 2 8999999 68 99999974 777 76666543334456777888887777775321 1 245677
Q ss_pred HHHHHHHHHHHHHhhCCCCCccccccCcceeEecCC------CHHHH-HHHhhhccEEEeCCC----cEEec-cCCCCcH
Q 013839 342 IQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL------TPYQV-DRLAKEFHIYMTQDG----RISMA-GVTTGNV 409 (435)
Q Consensus 342 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~------~~~~~-~~ll~~~gI~i~pgg----Ris~~-~~~~e~i 409 (435)
++++++++.+.|++++.+. +...++ .|.++|+.+ +...+ ..+ .++||.+.|++ |++++ ..+++++
T Consensus 349 ~~~~~~~l~~~L~~l~~~~-~~~~~~-~g~~~~v~l~~~~~~~~~~l~~~l-~~~Gv~v~~~~~~~iRi~~~~~~t~e~i 425 (439)
T 2oat_A 349 ADKLGIILRNELMKLPSDV-VTAVRG-KGLLNAIVIKETKDWDAWKVCLRL-RDNGLLAKPTHGDIIRFAPPLVIKEDEL 425 (439)
T ss_dssp HHHHHHHHHHHHTTSCTTT-EEEEEE-ETTEEEEEECCCSSCCHHHHHHHH-HHTTEECCBSSSSEEEECCCTTCCHHHH
T ss_pred HHHHHHHHHHHHHHhcCCC-cEEEEe-eeeEEEEEEecCccHHHHHHHHHH-HHCCeEEecCCCCEEEEECccCCCHHHH
Confidence 8888889999998775321 111233 345565533 24444 555 46899999864 88764 2488999
Q ss_pred HHHHHHHHHHHHh
Q 013839 410 NYLANAIHEVTRS 422 (435)
Q Consensus 410 ~~~~~~l~~~l~~ 422 (435)
++++++|++++++
T Consensus 426 ~~~l~~l~~~l~~ 438 (439)
T 2oat_A 426 RESIEIINKTILS 438 (439)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998764
No 155
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}
Probab=99.94 E-value=1.6e-25 Score=222.37 Aligned_cols=332 Identities=11% Similarity=0.004 Sum_probs=198.2
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCch
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~ 127 (435)
++...|||+.|.+.+.-++ .++.+++.+.+++..+. .| .+..++++++++++..... ..+++. +++||+
T Consensus 55 ~g~~~iD~~~~~~~~~lg~-~~~~v~~a~~~~~~~~~--~~---~~~~~~~~~la~~l~~~~~---~~~~v~--~~~gg~ 123 (453)
T 2cy8_A 55 DGNVYLDFFGGHGALVLGH-GHPRVNAAIAEALSHGV--QY---AASHPLEVRWAERIVAAFP---SIRKLR--FTGSGT 123 (453)
T ss_dssp TCCEEEESCTTTTSCTTCB-TCHHHHHHHHHHHTTTC--SS---CSSCHHHHHHHHHHHHHCT---TCSEEE--EESCHH
T ss_pred CCCEEEECcccHhhcccCC-CCHHHHHHHHHHHHhCC--CC---CCCCHHHHHHHHHHHhhCC---CCCEEE--EeCCHH
Confidence 4567899999964222232 34445555555554331 23 2345788888888733221 156787 999999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhh-----------CCCCe----eeeeecCCCCCCcChHhHHHHhhcC
Q 013839 128 GACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRD-----------AQIPE----RTYHYYDPDSKSLDFAALMDDIKNA 192 (435)
Q Consensus 128 ~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~-----------~g~~~----~~v~~~~~~~~~~d~e~l~~~i~~~ 192 (435)
+|+.++..+...+.++++|++.+|+|.++...+.. .|... ..+.. + + .|+++|++++++.
T Consensus 124 eA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~--~-~d~~~le~~l~~~ 198 (453)
T 2cy8_A 124 ETTLLALRVARAFTGRRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLI--R--P-DDIEGMREVFANH 198 (453)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEECC----------------------------CGGGEEEE--C--T-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeec--C--C-CCHHHHHHHHHhc
Confidence 99998853322133457899999999876543221 12211 01111 1 1 3899999988743
Q ss_pred CCCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEeccccc
Q 013839 193 PDSSFFLLHPSAHNPTGVDP-TEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKS 271 (435)
Q Consensus 193 ~~~~~~v~~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~ 271 (435)
++++++|+++..+||||... +++++++|.++|++||+++|+||+|.++ ..+. ......+ +...+ +.|+||.
T Consensus 199 ~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~---~~~~~~~-~~~~d---i~s~sK~ 270 (453)
T 2cy8_A 199 GSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGF-RVGN---HGMQALL-DVQPD---LTCLAKA 270 (453)
T ss_dssp GGGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTTTT-TTCT---THHHHHH-TCCCS---EEEEEGG
T ss_pred CCCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcccc-ccCc---hhhhHHh-CCCCc---EEEEChh
Confidence 23567776655567899765 7999999999999999999999999877 3321 2222222 22222 2389999
Q ss_pred ccccCCcccEEEEEecChhHHHHHHHHHHH-----HhhccccCCChhHHHHHHHHhCC-hhhHHHHHHHHHHHHHHHHHH
Q 013839 272 MGLYGHRVGCLSILCVDSKQAAAIRSQIQQ-----IARAMYGSPPVHGILLVATILSD-PNLKSLWIDEVKIMADRIQRK 345 (435)
Q Consensus 272 ~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~q~~~~~~l~~-~~l~~~~~~~~~~~~~~~~~~ 345 (435)
++ .|+|+||+++ +++ +++.+.. .....+.+.+.+++.++.++|+. . .+...++++++
T Consensus 271 l~-~G~~~G~v~~---~~~----~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal~~~~---------~~~~~~~~~~~ 333 (453)
T 2cy8_A 271 SA-GGLPGGILGG---RED----VMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAIDTIL---------EDDVCAKINDL 333 (453)
T ss_dssp GG-TTSSCEEEEE---CHH----HHTTSSSCC---------CCCCHHHHHHHHHHHHHHH---------HTTHHHHHHHH
T ss_pred hh-CCcceEEEec---hHH----HHHHhccccCCCceeCCCCCCCHHHHHHHHHHHHHHh---------hhhHHHHHHHH
Confidence 99 5999999974 777 6665543 11223456778888777777642 1 12334555666
Q ss_pred HHHHHHHHHhh----CCCCCccccccCcceeEecCCC-----------------------HH-HHHHHhhhccEEEeCCC
Q 013839 346 RTTLRQNLEKL----GSSLNWEHITNQLGMFCFSGLT-----------------------PY-QVDRLAKEFHIYMTQDG 397 (435)
Q Consensus 346 ~~~l~~~l~~~----~~~~~~~~~~~~~g~~~~~~~~-----------------------~~-~~~~ll~~~gI~i~pgg 397 (435)
++++.+.|+++ +. ....++. |.++|+.+. .. +...++ ++||.+.|++
T Consensus 334 ~~~l~~~L~~~~~~~~~---~~~~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~Gv~v~~~~ 408 (453)
T 2cy8_A 334 GQFAREAMNHLFARKGL---NWLAYGR-FSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALI-LEGVDIGGRG 408 (453)
T ss_dssp HHHHHHHHHHHHHHTTC---CEEEECC-TTEEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHH-HTTEECBTTT
T ss_pred HHHHHHHHHHHHhhCCC---cEEEEEe-eeEEEEEEeccccccccccccccccccccHHHHHHHHHHHH-HCCeEEeCCC
Confidence 66666666554 32 1123344 456666332 12 345554 6899998877
Q ss_pred cEEec-cCCCCcHHHHHHHHHHHHHhhhh
Q 013839 398 RISMA-GVTTGNVNYLANAIHEVTRSEQE 425 (435)
Q Consensus 398 Ris~~-~~~~e~i~~~~~~l~~~l~~~~~ 425 (435)
|+.+. ..+++++++++++|+++++++..
T Consensus 409 ~~~l~~~~t~~~i~~~l~~l~~~l~~~~~ 437 (453)
T 2cy8_A 409 SVFLSAQHEREHVEHLVTTFDRVLDRLAD 437 (453)
T ss_dssp EEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEeeccCCHHHHHHHHHHHHHHHHHHHh
Confidence 44332 23889999999999999877653
No 156
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*
Probab=99.94 E-value=2.6e-25 Score=219.49 Aligned_cols=329 Identities=13% Similarity=0.077 Sum_probs=208.5
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCch
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~ 127 (435)
++...|||+.|.+.+.-|+ .++.+++.+.+++..+....|. .....++++.+++++. . .+++. +++||+
T Consensus 54 ~g~~~lD~~~~~~~~~lG~-~~~~v~~a~~~~~~~~~~~~~~-~~~~~~l~~~la~~~~--~-----~~~v~--~~~sgs 122 (434)
T 2epj_A 54 DGARIVDLVLAYGPLILGH-KHPRVLEAVEEALARGWLYGAP-GEAEVLLAEKILGYVK--R-----GGMIR--FVNSGT 122 (434)
T ss_dssp TCCEEEESSGGGTTCTTCB-TCHHHHHHHHHHHHTCSCCSSC-CHHHHHHHHHHHHHHC--T-----TCEEE--EESSHH
T ss_pred CCCEEEEcccchhcccCCC-CCHHHHHHHHHHHHhCCCCCCC-CHHHHHHHHHHHHhCC--C-----CCEEE--EeCCHH
Confidence 5577899999874222232 3344445555555443223342 2334567777777652 1 45777 899999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHh-h-------------CCC------CeeeeeecCCCCCCcChHhHHH
Q 013839 128 GACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWR-D-------------AQI------PERTYHYYDPDSKSLDFAALMD 187 (435)
Q Consensus 128 ~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~-~-------------~g~------~~~~v~~~~~~~~~~d~e~l~~ 187 (435)
+|+.++..+...+.++++|++.+|+|.++...+. . .|+ ++..++. .|++.|++
T Consensus 123 eA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-------~d~~~le~ 195 (434)
T 2epj_A 123 EATMTAIRLARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPY-------NDVEALER 195 (434)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEET-------TCHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCC-------CCHHHHHH
Confidence 9998885432224466889999999987543221 1 132 2333332 38899999
Q ss_pred HhhcCCCCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEe
Q 013839 188 DIKNAPDSSFFLLHPSAHNPTGVDP-TEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQ 266 (435)
Q Consensus 188 ~i~~~~~~~~~v~~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 266 (435)
++++.++++++|+++..+||||.+. +++.+++|.++|++||+++|+||+|.++..+. ......+ +...+ +.
T Consensus 196 ~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~~~g~----~~~~~~~-~~~~d---i~ 267 (434)
T 2epj_A 196 VFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGFRLGL----EGAQGYF-NIEGD---II 267 (434)
T ss_dssp HHHHHGGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTTTSST----THHHHHH-TCCCS---EE
T ss_pred HHHhCCCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhceeCCc----chhhHHh-CCCCC---ee
Confidence 9874323567777766667899876 79999999999999999999999998773321 1222222 22222 34
Q ss_pred cccccccccCCcccEEEEEecChhHHHHHHHHHHHHh---hccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Q 013839 267 SYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIA---RAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQ 343 (435)
Q Consensus 267 s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~ 343 (435)
|+||.++. |+|+||+++ +++ +++.+.... ...+.+.+.+++.++.++|+... + +...++++
T Consensus 268 s~sK~l~~-G~~~G~v~~---~~~----~~~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~~~------~--~~~~~~~~ 331 (434)
T 2epj_A 268 VLGKIIGG-GFPVGAVAG---SRE----VMSLLTPQGKVFNAGTFNAHPITMAAGLATLKALE------E--EPVYSVSR 331 (434)
T ss_dssp EEEGGGGT-TSSCEEEEE---CHH----HHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHH------H--SCHHHHHH
T ss_pred eecchhcC-Ccceeeeee---cHH----HHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHH------h--cCHHHHHH
Confidence 89999995 999999974 777 766655421 12345677788877777764321 1 34556666
Q ss_pred HHHHHHHHHHHhh----CCCCCccccccCcceeEecCCC-----------------HHHH-HHHhhhccEEEeCCC--cE
Q 013839 344 RKRTTLRQNLEKL----GSSLNWEHITNQLGMFCFSGLT-----------------PYQV-DRLAKEFHIYMTQDG--RI 399 (435)
Q Consensus 344 ~~~~~l~~~l~~~----~~~~~~~~~~~~~g~~~~~~~~-----------------~~~~-~~ll~~~gI~i~pgg--Ri 399 (435)
++++++.+.|+++ +.. ....+. |.++|+.+. .+.+ ..+ .++||.+.|++ |+
T Consensus 332 ~~~~~l~~~L~~~~~~~~~~---~~~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~~~~~ 406 (434)
T 2epj_A 332 EAAKALEEAASEVLDRTGLP---YTINRV-ESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEM-LRRGVFIAPSNLEAV 406 (434)
T ss_dssp HHHHHHHHHHHHHHHHHTCC---EEEEEE-TTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHH-HHTTEECCSSTTSCE
T ss_pred HHHHHHHHHHHHHHhhCCCc---EEEEEe-eeEEEEEEeCCCcccchhccccCHHHHHHHHHHH-HHCCeEEeccCCCcE
Confidence 7777777777654 421 122333 446665331 2234 445 46899999986 55
Q ss_pred Eec-cCCCCcHHHHHHHHHHHHHhh
Q 013839 400 SMA-GVTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 400 s~~-~~~~e~i~~~~~~l~~~l~~~ 423 (435)
.+. ..+++++++++++|+++++++
T Consensus 407 ~~~~~~t~e~i~~~l~~l~~~l~~~ 431 (434)
T 2epj_A 407 FTGLPHQGEALEIAVEGLRSSLKTV 431 (434)
T ss_dssp ECCTTCSHHHHHHHHHHHHHHHHHH
T ss_pred EEeccCCHHHHHHHHHHHHHHHHHH
Confidence 432 238899999999999998765
No 157
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3
Probab=99.94 E-value=5.5e-25 Score=215.82 Aligned_cols=317 Identities=13% Similarity=0.063 Sum_probs=207.2
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCC-----CCC--CCcccHHHHHHHHHhHcCCCCccccCCCeeeEe
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFL-----ESI--SASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQ 122 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~Y~--~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~ 122 (435)
++.+.|+.+.+ + +.++.+.+++...+...... .|. ......++++.+++++ +.. ++++. +
T Consensus 27 ~~~~yld~~~~----~-~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~-g~~-----~~~v~--~ 93 (416)
T 1qz9_A 27 EGVIYLDGNSL----G-ARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLI-GAR-----DGEVV--V 93 (416)
T ss_dssp TTCEECCTTTS----C-CCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTT-TCC-----TTSEE--E
T ss_pred CCeEeecCCCc----C-CCcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHc-CCC-----cccEE--E
Confidence 46777877763 1 33444444444444322110 011 1244578888888887 332 46787 8
Q ss_pred cCCchhHHHHHHHHHHHh------CCCCEE-EEcCCCChhhHHHH----hhC--CCCeeeeeecCCCCCCcChHhHHHHh
Q 013839 123 ALSGTGACRLFAEFQRRF------HPESHI-YFPDPTWSNHHNIW----RDA--QIPERTYHYYDPDSKSLDFAALMDDI 189 (435)
Q Consensus 123 t~gg~~a~~~~~~~~~~~------~~gd~V-lv~~p~y~~~~~~~----~~~--g~~~~~v~~~~~~~~~~d~e~l~~~i 189 (435)
++|+++++.++ +..++ .+||+| ++..++|+.+...+ +.. |++++.++. +++|++++
T Consensus 94 ~~g~t~al~~a--l~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~---------~~~l~~~i 162 (416)
T 1qz9_A 94 TDTTSINLFKV--LSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDS---------PEELPQAI 162 (416)
T ss_dssp CSCHHHHHHHH--HHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEESS---------GGGHHHHC
T ss_pred eCChhHHHHHH--HHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCceEEEeCc---------HHHHHHHh
Confidence 99999998777 44333 899975 45556777654432 223 888777753 67888888
Q ss_pred hcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEeccc
Q 013839 190 KNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYA 269 (435)
Q Consensus 190 ~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~S 269 (435)
. ++++++++++|+||||..++ +++|.++|++||+++|+|++|..... . .+ +... +.++++.|++
T Consensus 163 ~---~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~g~~-~--~~---~~~~----~~d~~~~s~~ 226 (416)
T 1qz9_A 163 D---QDTAVVMLTHVNYKTGYMHD---MQALTALSHECGALAIWDLAHSAGAV-P--VD---LHQA----GADYAIGCTY 226 (416)
T ss_dssp S---TTEEEEEEESBCTTTCBBCC---HHHHHHHHHHHTCEEEEECTTTTTTS-C--CC---HHHH----TCSEEEECSS
T ss_pred C---CCceEEEEeccccCcccccC---HHHHHHHHHHcCCEEEEEccccccCc-C--CC---hhhc----CCCEEEecCc
Confidence 7 57899999999999999987 57999999999999999999863221 1 11 2111 2458889999
Q ss_pred ccccccCCcc-cEEEEEecChhHHHHHHHHHHHHh-----------------------hccccCCChhHHHHHHHHhCCh
Q 013839 270 KSMGLYGHRV-GCLSILCVDSKQAAAIRSQIQQIA-----------------------RAMYGSPPVHGILLVATILSDP 325 (435)
Q Consensus 270 K~~g~~G~Rv-G~~~~~~~~~~~~~~~~~~l~~~~-----------------------~~~~~~~~~~~q~~~~~~l~~~ 325 (435)
|.++ +|.|+ ||+++ +++ +++.+.... .....+++...+.++..++...
T Consensus 227 K~l~-~g~~~~g~l~~---~~~----~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~ 298 (416)
T 1qz9_A 227 KYLN-GGPGSQAFVWV---SPQ----LCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVF 298 (416)
T ss_dssp STTC-CCTTCCCEEEE---CTT----TTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHH
T ss_pred ccCC-CCCCCeEEEEE---CHH----HHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHH
Confidence 9975 67888 99974 666 544443310 1112345566665555555321
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----CCCCCccccccC----cceeEecCC-CHHHHHHHhhhccEEEeCC
Q 013839 326 NLKSLWIDEVKIMADRIQRKRTTLRQNLEKL----GSSLNWEHITNQ----LGMFCFSGL-TPYQVDRLAKEFHIYMTQD 396 (435)
Q Consensus 326 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~----~g~~~~~~~-~~~~~~~ll~~~gI~i~pg 396 (435)
. .+.+++.+++++++++++.+.|+++ + +.+..+. .+.++|+.+ +.+.+.+.|.++||.+...
T Consensus 299 ~-----~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~~~~~ 369 (416)
T 1qz9_A 299 A-----QTDMASLRRKSLALTDLFIELVEQRCAAHE----LTLVTPREHAKRGSHVSFEHPEGYAVIQALIDRGVIGDYR 369 (416)
T ss_dssp T-----TSCHHHHHHHHHHHHHHHHHHHHHHHTTSC----CEECSCSSGGGBCSEEEEECTTHHHHHHHHHTTTEECEEE
T ss_pred H-----hcCHHHHHHHHHHHHHHHHHHHHhhccCCC----eEEeCCCCHHHcCCEEEEecCCHHHHHHHHHhCCcEeccC
Confidence 1 0245677888899999999999876 4 3444442 244667655 3444544445789998653
Q ss_pred --C--cEEec--cCCCCcHHHHHHHHHHHHHhh
Q 013839 397 --G--RISMA--GVTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 397 --g--Ris~~--~~~~e~i~~~~~~l~~~l~~~ 423 (435)
+ ||+++ ..+++++++++++|++++++.
T Consensus 370 ~~~~lRis~~~~~~t~~~i~~~~~~l~~~~~~~ 402 (416)
T 1qz9_A 370 EPRIMRFGFTPLYTTFTEVWDAVQILGEILDRK 402 (416)
T ss_dssp TTTEEEEECCTTTCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCeEEEeCcccCCCHHHHHHHHHHHHHHHhcc
Confidence 2 99986 458999999999999998754
No 158
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*
Probab=99.94 E-value=5e-26 Score=225.52 Aligned_cols=343 Identities=10% Similarity=0.002 Sum_probs=201.3
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCch
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~ 127 (435)
+++..+|+..|.+...-|+ .++.+++++.+++... .+ |....+..+.++++++++..... ...+++. +++||+
T Consensus 42 ~g~~ylD~~~~~~~~~lG~-~~p~v~~A~~~~~~~~-~~-~~~~~~~~~~~~~la~~l~~~~~--~~~~~v~--~~~sGs 114 (448)
T 3dod_A 42 NGKEYYDGFSSVWLNVHGH-RKKELDDAIKKQLGKI-AH-STLLGMTNVPATQLAETLIDISP--KKLTRVF--YSDSGA 114 (448)
T ss_dssp TSCEEEETTHHHHTCSSCB-SCHHHHHHHHHHHTTC-SC-CCCSSSEEHHHHHHHHHHHHHSC--TTEEEEE--EESSHH
T ss_pred CCCEEEECCcchhhccCCC-CCHHHHHHHHHHHHhc-cC-ccccccCCHHHHHHHHHHHHhCC--CCCCEEE--EeCchH
Confidence 5678999999864333332 2445555555665432 12 33334444556666666522211 1135777 999999
Q ss_pred hHHHHHHHHHHHh--CC----CCEEEEcCCCChhhHHHHhhCCC-------------CeeeeeecCCCCCCc--------
Q 013839 128 GACRLFAEFQRRF--HP----ESHIYFPDPTWSNHHNIWRDAQI-------------PERTYHYYDPDSKSL-------- 180 (435)
Q Consensus 128 ~a~~~~~~~~~~~--~~----gd~Vlv~~p~y~~~~~~~~~~g~-------------~~~~v~~~~~~~~~~-------- 180 (435)
+|+..+..+.... .+ +|+|++++|+|.++.......+. ....++. ++.+..
T Consensus 115 eA~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 192 (448)
T 3dod_A 115 EAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPI--PYVYRSESGDPDEC 192 (448)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCCEEEEEC-----------------------------CEEECC--CCCTTSSSCCHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeCC--CccccCCccchhhh
Confidence 9999985333221 13 49999999999877543332222 2233332 222222
Q ss_pred ---ChHhHHHHhhcCCCCcEEEEeCCCC-CCCCC-CCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHh
Q 013839 181 ---DFAALMDDIKNAPDSSFFLLHPSAH-NPTGV-DPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIF 255 (435)
Q Consensus 181 ---d~e~l~~~i~~~~~~~~~v~~~~p~-NPtG~-~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~ 255 (435)
|+++|++++.+.++++++|+++.++ |++|. ..+++.+++|.++|++||+++|+||+|.+++..+. ......+
T Consensus 193 ~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~---~~a~~~~ 269 (448)
T 3dod_A 193 RDQCLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGK---MFACEHE 269 (448)
T ss_dssp HHHHHHHHHHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SSGGGGG
T ss_pred hHHHHHHHHHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCCcccc---hhhhhhc
Confidence 4788998886433456777776666 88885 45788899999999999999999999998875431 1111111
Q ss_pred hhcCCeEEEEecccccccccC-CcccEEEEEecChhHHHHHHHHHHH-------HhhccccCCChhHHHHHHHHhCChhh
Q 013839 256 LEDEHLIGCAQSYAKSMGLYG-HRVGCLSILCVDSKQAAAIRSQIQQ-------IARAMYGSPPVHGILLVATILSDPNL 327 (435)
Q Consensus 256 ~~~~~~~i~~~s~SK~~g~~G-~RvG~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~~~~q~~~~~~l~~~~l 327 (435)
+.... +.++||.++ .| +|+||+++ +++ +++.+.+ .....+.+.+.+++.++.++|+...
T Consensus 270 -~~~~d---i~t~sK~l~-~G~~~ig~v~~---~~~----~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~- 336 (448)
T 3dod_A 270 -NVQPD---LMAAGKGIT-GGYLPIAVTFA---TED----IYKAFYDDYENLKTFFHGHSYTGNQLGCAVALENLALFE- 336 (448)
T ss_dssp -TCCCS---EEEECGGGG-TTSSCCEEEEE---EHH----HHHTTCSCGGGCCCCCCCCTTTTCHHHHHHHHHHHHHHH-
T ss_pred -CCCCC---EEEeccccc-CCcCceEEEEE---CHH----HHHHhhhccccCCcccccCCCCcCHHHHHHHHHHHHHHh-
Confidence 22122 346899998 59 59999974 778 7777765 3334556778888888888875321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCC--C--------------HHHHHHHhhhccE
Q 013839 328 KSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL--T--------------PYQVDRLAKEFHI 391 (435)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~--~--------------~~~~~~ll~~~gI 391 (435)
+ +...++++++.+.+++.|+++.....+....+. |.+.|+.+ + .++...++ ++||
T Consensus 337 -----~--~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv 407 (448)
T 3dod_A 337 -----S--ENIVEQVAEKSKKLHFLLQDLHALPHVGDIRQL-GFMCGAELVRSKETKEPYPADRRIGYKVSLKMR-ELGM 407 (448)
T ss_dssp -----H--TTHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEE-TTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHH-HTTE
T ss_pred -----c--ccHHHHHHHHHHHHHHHHHHHhcCCCeEEEEee-eEEEEEEEccCcccccccchhhHHHHHHHHHHH-HCCc
Confidence 1 223344444445555555443110012222333 44555533 1 23445554 5799
Q ss_pred EEeCCC---cEEec-cCCCCcHHHHHHHHHHHHHhhh
Q 013839 392 YMTQDG---RISMA-GVTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 392 ~i~pgg---Ris~~-~~~~e~i~~~~~~l~~~l~~~~ 424 (435)
.+.|+| ||++. ..+++++++++++|++++++..
T Consensus 408 ~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 444 (448)
T 3dod_A 408 LTRPLGDVIAFLPPLASTAEELSEMVAIMKQAIHEVT 444 (448)
T ss_dssp ECCEETTEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEeccCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 999986 88543 3388999999999999987654
No 159
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Probab=99.93 E-value=2.6e-25 Score=219.39 Aligned_cols=284 Identities=14% Similarity=0.097 Sum_probs=181.0
Q ss_pred cHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHh--------CCCCEEEEcCCCChhh---------
Q 013839 94 STKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRF--------HPESHIYFPDPTWSNH--------- 156 (435)
Q Consensus 94 ~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~--------~~gd~Vlv~~p~y~~~--------- 156 (435)
..++|+.+++++ +.. +++++ +++|+++|+.++ +..++ .+||+|+++.|+|..+
T Consensus 63 ~~~l~~~la~~~-g~~-----~~~v~--~~~g~t~a~~~~--~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~ 132 (432)
T 3a9z_A 63 INTARASLAKMI-GGK-----PQDII--FTSGGTESNNLV--IHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVE 132 (432)
T ss_dssp HHHHHHHHHHHH-TCC-----GGGEE--EESCHHHHHHHH--HHHHHHHHHHHHHHC------------CCCEEEEETTC
T ss_pred HHHHHHHHHHHc-CCC-----cCeEE--EeCChHHHHHHH--HHHHHhhhhhccccCCccccccccccccCCeEEEecCc
Confidence 468999999998 332 45787 999999999988 44433 4899999999999865
Q ss_pred --------HHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcC
Q 013839 157 --------HNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKG 228 (435)
Q Consensus 157 --------~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~ 228 (435)
....+..|++++.++.. ++++.+|+++|++++. ++++++++++|+||||.+++.+ +|.++|++++
T Consensus 133 h~s~~~~~~~~~~~~g~~v~~v~~~-~~~~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~~~---~i~~l~~~~~ 205 (432)
T 3a9z_A 133 HDSIRLPLEHLVEDQVAEVTFVPVS-KVNGQVEVEDILAAVR---PTTCLVTIMLANNETGVIMPIS---EISRRIKALN 205 (432)
T ss_dssp CHHHHHHHHHHHHTTSCEEEEECCC-TTTSSCCHHHHHHTCC---TTEEEEECCSBCTTTCBBCCHH---HHHHHHHHHH
T ss_pred chhHHHHHHHHHHhcCcEEEEEecC-cccCCcCHHHHHHhcc---CCceEEEEECcccCcccccCHH---HHHHHHHhcC
Confidence 23345578999999873 3356799999999987 5789999999999999999865 7888899998
Q ss_pred ----------ceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHH-HH
Q 013839 229 ----------HFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAI-RS 297 (435)
Q Consensus 229 ----------~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~-~~ 297 (435)
+++|+|++|...... .+ +... . ..+++.|+||.+| .|+||+++ +++ + ..
T Consensus 206 ~~~~~~~~~~~~livDea~~~~~~~---~~---~~~~---~-~d~~~~s~~K~~g---~~~G~~~~---~~~----~~~~ 265 (432)
T 3a9z_A 206 QIRAASGLPRVLVHTDAAQALGKRR---VD---VEDL---G-VDFLTIVGHKFYG---PRIGALYV---RGV----GKLT 265 (432)
T ss_dssp HHHHHHTCCCCEEEEECTTTTTTSC---CC---HHHH---C-CSEEEEEGGGTTC---CSCEEEEE---TTB----TTTB
T ss_pred cccccccCCceEEEEEchhhhCCcc---cC---hhhc---C-CCEEEEehhHhcC---CcceEEEE---ccc----cccC
Confidence 999999998654321 11 1111 1 2356899999875 56999974 554 3 22
Q ss_pred HHHHH-------hhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCCcccccc--
Q 013839 298 QIQQI-------ARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKL-GSSLNWEHITN-- 367 (435)
Q Consensus 298 ~l~~~-------~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~-- 367 (435)
.+... ......+.+...+.++.+++... ++.+++.+++++++++++.+.|+++ +.. +....+
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~~------~~~~~~~~~~~~~~~~~l~~~L~~~~g~~--~~~~~~~~ 337 (432)
T 3a9z_A 266 PLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLV------SENCETYEAHMRDIRDYLEERLEAEFGKR--IHLNSRFP 337 (432)
T ss_dssp CCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHGGG--EEESSCCT
T ss_pred CcCceeecCCccccccCCCcCHHHHHHHHHHHHHH------HhhHHHHHHHHHHHHHHHHHHHHhccCCc--EEEeCCCC
Confidence 22210 11222456667776766666432 2456788889999999999999875 321 111111
Q ss_pred ----C--cceeEecCC--CHHHHHHHhhhccEEEeC-------------------C-------C--cEEeccC-CCCcHH
Q 013839 368 ----Q--LGMFCFSGL--TPYQVDRLAKEFHIYMTQ-------------------D-------G--RISMAGV-TTGNVN 410 (435)
Q Consensus 368 ----~--~g~~~~~~~--~~~~~~~ll~~~gI~i~p-------------------g-------g--Ris~~~~-~~e~i~ 410 (435)
. ...|.+.+. +.+.+...+ .+|.+.+ | + ||+++.. ++++++
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~G~~~~~~~~~~~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~ 415 (432)
T 3a9z_A 338 GVERLPNTCNFSIQGSQLRGYMVLAQC--QTLLASVGASCHSDHEDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVD 415 (432)
T ss_dssp TCCBCTTEEEEEECSTTCCHHHHHHHC--SSEECBSSCGGGGGGTTSCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHH
T ss_pred cccCCCCEEEEEeCCCCCcHHHHHHHh--cCeEEeccccccCCCCCCccHHHHhcCCCccccCceEEEEcCCCCCHHHHH
Confidence 1 123344443 444332222 1344322 1 3 9998643 689999
Q ss_pred HHHHHHHHHHHhhh
Q 013839 411 YLANAIHEVTRSEQ 424 (435)
Q Consensus 411 ~~~~~l~~~l~~~~ 424 (435)
+++++|+++++++.
T Consensus 416 ~~~~~l~~~~~~~~ 429 (432)
T 3a9z_A 416 LIVQDLKQAVNQLE 429 (432)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999987654
No 160
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}
Probab=99.93 E-value=1.8e-25 Score=221.81 Aligned_cols=339 Identities=10% Similarity=0.037 Sum_probs=206.8
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCC-CCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCC
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEF-LESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALS 125 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~g 125 (435)
.+++..||+..|.+...-|. .++.+++++.+++..... ..+.+.....++++.+++++ +.. .+ +. +++|
T Consensus 46 ~~g~~~lD~~~~~~~~~lG~-~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~-~~~-----~~-v~--~~~g 115 (452)
T 3n5m_A 46 IQGKRYLDGMSGLWCVNSGY-GRKELAEAAYKQLQTLSYFPMSQSHEPAIKLAEKLNEWL-GGE-----YV-IF--FSNS 115 (452)
T ss_dssp TTCCEEEETTHHHHTCTTCB-CCHHHHHHHHHHHTTCCCCCTTSEEHHHHHHHHHHHHHH-TSC-----EE-EE--EESS
T ss_pred CCCCEEEECCcchhhccCCC-CCHHHHHHHHHHHHhcCCcccccCCHHHHHHHHHHHHhC-CCC-----ce-EE--EeCc
Confidence 35678999999954232332 244555555566543211 11112223345555555554 211 23 66 8999
Q ss_pred chhHHHHHHHHHHHh---C---CCCEEEEcCCCChhhHHHHhhCCCCe-------------eeeeecCCCCCCc-C----
Q 013839 126 GTGACRLFAEFQRRF---H---PESHIYFPDPTWSNHHNIWRDAQIPE-------------RTYHYYDPDSKSL-D---- 181 (435)
Q Consensus 126 g~~a~~~~~~~~~~~---~---~gd~Vlv~~p~y~~~~~~~~~~g~~~-------------~~v~~~~~~~~~~-d---- 181 (435)
|++|+..+..+.... . ++|+|++.+|+|.++.......+... ..++..+...+.. |
T Consensus 116 gseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (452)
T 3n5m_A 116 GSEANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENI 195 (452)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCG
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCccCCchhh
Confidence 999999985333211 4 77999999999988765544443322 1222100000000 1
Q ss_pred -----hHhHHHHhh-cCCCCcEEEEeCCC-CCCCCCCC-CHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHH
Q 013839 182 -----FAALMDDIK-NAPDSSFFLLHPSA-HNPTGVDP-TEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIR 253 (435)
Q Consensus 182 -----~e~l~~~i~-~~~~~~~~v~~~~p-~NPtG~~~-~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~ 253 (435)
+++|++.+. ..++++++++++++ +| ||..+ +++.+++|.++|++||+++|+||+|.+|+..+. .....
T Consensus 196 ~~~~~~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~---~~~~~ 271 (452)
T 3n5m_A 196 YDVECVKEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTGK---AFGFM 271 (452)
T ss_dssp GGCHHHHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGGG
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCcccc---cchhh
Confidence 789999886 33346788888887 89 99766 888899999999999999999999998876531 11111
Q ss_pred HhhhcCCeEEEEecccccccccC-CcccEEEEEecChhHHHHHHHHHHH------HhhccccCCChhHHHHHHHHhCChh
Q 013839 254 IFLEDEHLIGCAQSYAKSMGLYG-HRVGCLSILCVDSKQAAAIRSQIQQ------IARAMYGSPPVHGILLVATILSDPN 326 (435)
Q Consensus 254 ~~~~~~~~~i~~~s~SK~~g~~G-~RvG~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~~q~~~~~~l~~~~ 326 (435)
.+ +.... +.+|||.++. | +|+||+++ +++ +++.+.+ .....+.+.+.+++.++.++|+...
T Consensus 272 ~~-~~~~d---i~t~sK~l~~-G~~~ig~~~~---~~~----i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~ 339 (452)
T 3n5m_A 272 NY-DVKPD---IITMAKGITS-AYLPLSATAV---KRE----IYEAFKGKGEYEFFRHINTFGGNPAACALALKNLEIIE 339 (452)
T ss_dssp GT-TCCCS---EEEECGGGGT-TSSCCEEEEE---EHH----HHGGGCSSSTTCSCCCCCSSTTCHHHHHHHHHHHHHHH
T ss_pred hc-CCCCC---EEeecccccC-CCcceEEEEE---CHH----HHHHHhhccCCCCccccCCCCCCHHHHHHHHHHHHHHH
Confidence 11 21122 3368999995 9 99999974 788 7776642 1123456778888888888775321
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--CCCCCccccccCcceeEecCC----------C----HHHHHHHhhhcc
Q 013839 327 LKSLWIDEVKIMADRIQRKRTTLRQNLEKL--GSSLNWEHITNQLGMFCFSGL----------T----PYQVDRLAKEFH 390 (435)
Q Consensus 327 l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~g~~~~~~~----------~----~~~~~~ll~~~g 390 (435)
+ +...++++++.+.+++.|+++ ..+ .+....+.+. |+++.+ + .+....+ .++|
T Consensus 340 ------~--~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~g~-~~~i~~~~~~~~~~~~~~~~~~~~~~~l-~~~G 408 (452)
T 3n5m_A 340 ------N--ENLIERSAQMGSLLLEQLKEEIGEHP-LVGDIRGKGL-LVGIELVNDKETKEPIDNDKIASVVNAC-KEKG 408 (452)
T ss_dssp ------H--TTHHHHHHHHHHHHHHHHHHHHTTCT-TEEEEEESSS-CEEEEEEEETTTTEECCHHHHHHHHHHH-HHTT
T ss_pred ------h--ccHHHHHHHHHHHHHHHHHHHHhcCC-CeEEEEEEEE-EEEEEEecCCcccCCCCHHHHHHHHHHH-HHCC
Confidence 1 233455555555666666544 111 1333444554 444322 1 1233444 5689
Q ss_pred EEEeCCC----------cEEecc-CCCCcHHHHHHHHHHHHHh
Q 013839 391 IYMTQDG----------RISMAG-VTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 391 I~i~pgg----------Ris~~~-~~~e~i~~~~~~l~~~l~~ 422 (435)
|.+.|++ ||+++. .+++++++++++|++++++
T Consensus 409 v~~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 451 (452)
T 3n5m_A 409 LIIGRNGMTTAGYNNILTLAPPLVISSEEIAFVIGTLKTAMER 451 (452)
T ss_dssp EECEECTTSSTTCCCEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred cEEeecCcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 9999762 886432 3889999999999998753
No 161
>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Probab=99.93 E-value=1.1e-25 Score=216.30 Aligned_cols=288 Identities=12% Similarity=0.046 Sum_probs=186.4
Q ss_pred CCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCE--EEEcCCCChhhH---HHH
Q 013839 86 LESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESH--IYFPDPTWSNHH---NIW 160 (435)
Q Consensus 86 ~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~--Vlv~~p~y~~~~---~~~ 160 (435)
..|.+..+..++++.+++++ +.. ..+ ++.||++|+.++ +..++.+||+ |+++.++|.... ...
T Consensus 42 ~~~~~~~~~~~l~~~la~~~-~~~------~~i---~~~~g~~a~~~a--~~~~~~~g~~~vvi~~~~~~~~~~~~~~~~ 109 (359)
T 3pj0_A 42 DIYGNGAVIEDFETKIAKIL-GKQ------SAV---FFPSGTMAQQIA--LRIWADRKENRRVAYHPLSHLEIHEQDGLK 109 (359)
T ss_dssp CBTTBSHHHHHHHHHHHHHH-TCS------EEE---EESCHHHHHHHH--HHHHHHHHTCCEEEECTTCHHHHSSTTHHH
T ss_pred CcccCCHHHHHHHHHHHHHh-CCC------cEE---EeCCHHHHHHHH--HHHHHhcCCCcEEEEeccceeeehhcchHH
Confidence 44777788899999999998 331 123 568889998877 6666678876 555555543321 122
Q ss_pred hhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCC-CCCCCHHHHHHHHHHHHhcCceeeeeccCCC
Q 013839 161 RDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPT-GVDPTEEQWREISYQFKVKGHFPFFDMAYQG 239 (435)
Q Consensus 161 ~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPt-G~~~~~~~l~~i~~~~~~~~~~vi~Deay~~ 239 (435)
...|++++.++. +++.+|+++|+++ . ++++++++++||||| |.+++.+++++|+++|++||+++|+|++|..
T Consensus 110 ~~~g~~~~~v~~---~~~~~d~~~l~~~-~---~~~~~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~ 182 (359)
T 3pj0_A 110 ELQQITPLLLGT---ANQLLTIDDIKSL-R---EPVSSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLW 182 (359)
T ss_dssp HHHCCEEEECSC---TTSCCCHHHHHTC-S---SCCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCG
T ss_pred HhcCceEEecCC---cCCCcCHHHHHhc-c---CCceEEEEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchh
Confidence 456888888875 3468999999887 3 678999999999998 7999999999999999999999999999754
Q ss_pred ccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHH--HH
Q 013839 240 FASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGI--LL 317 (435)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q--~~ 317 (435)
+........... +.. ...+++.|+||.++.++ + ||++. +++ +++.++........+.....+ .+
T Consensus 183 ~~~~~~~~~~~~---~~~--~~d~~~~s~sK~~~~~~-g-g~~~~---~~~----l~~~~~~~~~~~~~~~~~~~~~~~a 248 (359)
T 3pj0_A 183 EITPFYQKSAEE---ICA--LFDSVYVSFYKGIGGIA-G-AILAG---NDD----FVQEAKIWKRRYGGDLISLYPYILS 248 (359)
T ss_dssp GGHHHHTCCHHH---HHT--TCSEEEEESSSTTCCSS-C-EEEEE---CHH----HHHHHHHHHHHTTCCCSCCHHHHHH
T ss_pred cchhhhCCCHHH---hhc--cCCEEEEeccccCCCcc-e-EEEEC---CHH----HHHHHHHHHHHhCCCcchhHHHHHH
Confidence 431100011112 211 22345568999987553 2 66643 888 777777644332222222222 22
Q ss_pred HHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccc-ccCcceeEecCC--C----HHHHHHHhhhcc
Q 013839 318 VATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHI-TNQLGMFCFSGL--T----PYQVDRLAKEFH 390 (435)
Q Consensus 318 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~g~~~~~~~--~----~~~~~~ll~~~g 390 (435)
+...+. +.. +..+++.++++.+.+.|++++. +.+. .+..+.|+|+.+ . .+.+.+.+.++|
T Consensus 249 ~~~~l~---------~~~-~~~~~~~~~~~~l~~~L~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G 315 (359)
T 3pj0_A 249 ADYYFE---------KRI-GKMAEYFEAAKGLAERFNSCSG---VKTVPEVPVSNMFHVYFENSADEIGAILTKIQDETG 315 (359)
T ss_dssp HHHHHH---------HHG-GGHHHHHHHHHHHHHHHHTSTT---EEEESSSCSSSEEEEEESSCHHHHHHHHHHHHHHHC
T ss_pred HHHHHH---------HHH-HHhHHHHHHHHHHHHHHhhCCC---ceeeccCCcceEEEEEecCccchhHHHHHHHHHhcC
Confidence 222221 222 3334567788889999988732 4443 345555666543 2 345555567799
Q ss_pred EEEeCCC----------cEEecc----CCCCcHHHHHHHHHHH
Q 013839 391 IYMTQDG----------RISMAG----VTTGNVNYLANAIHEV 419 (435)
Q Consensus 391 I~i~pgg----------Ris~~~----~~~e~i~~~~~~l~~~ 419 (435)
|.+.||. |++++. .+.+++++++++|++.
T Consensus 316 V~v~~g~~~~~~~~~~~r~~i~~~~~~~~~e~l~~~l~~l~~~ 358 (359)
T 3pj0_A 316 VGISGYLQEKSADVCAFEVSVGDAFAEIPAKNLELVFRCLEKE 358 (359)
T ss_dssp EECCSCCEEEETTEEEEEEECCTTGGGSCHHHHHHHHHHHHHH
T ss_pred cEecCCccccCCCceEEEEEecCccccCCHHHHHHHHHHHHhc
Confidence 9999972 776642 3566677777777654
No 162
>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*
Probab=99.93 E-value=4.2e-26 Score=219.39 Aligned_cols=277 Identities=10% Similarity=0.060 Sum_probs=189.2
Q ss_pred cHHHHHHHHHhHcCCCCccccCCCeeeEecCCc-hhHHHHHHHHHHHhCC---CCEEEEcCCCChhhHHHHhhCCCCeee
Q 013839 94 STKMVEESVKLVYGKDSDVVKEGRSAGVQALSG-TGACRLFAEFQRRFHP---ESHIYFPDPTWSNHHNIWRDAQIPERT 169 (435)
Q Consensus 94 ~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg-~~a~~~~~~~~~~~~~---gd~Vlv~~p~y~~~~~~~~~~g~~~~~ 169 (435)
..++++.+++++ +.. . +++++ +++|+ ++|+.++ +.+++.+ ||.|+++.++|.. ...++..| +++.
T Consensus 50 ~~~l~~~la~~~-g~~-~---~~~v~--~~~g~gt~al~~~--~~~l~~~~~~g~~vi~~~~~~~~-~~~~~~~g-~~~~ 118 (360)
T 1w23_A 50 HEQAQNLLRELL-QIP-N---DYQIL--FLQGGASLQFTML--PMNLLTKGTIGNYVLTGSWSEKA-LKEAKLLG-ETHI 118 (360)
T ss_dssp HHHHHHHHHHHH-TCC-T---TEEEE--EESSHHHHHHHHH--HHHHCCTTCEEEEEECSHHHHHH-HHHHHTTS-EEEE
T ss_pred HHHHHHHHHHHh-CCC-C---CceEE--EECCcchHHHHHH--HHHhcCCCCcccEEEecchhHHH-HHHHHHhC-CeEE
Confidence 457888888887 332 1 35777 88898 9999888 6666655 5667777666644 23456789 9999
Q ss_pred eeecCCCCCCcChHhHHH-HhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCccc
Q 013839 170 YHYYDPDSKSLDFAALMD-DIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKD 248 (435)
Q Consensus 170 v~~~~~~~~~~d~e~l~~-~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~ 248 (435)
+++. ++++.+|++++++ +++ ++++++++++|+||||.+++ ++ +++||+++|+|++|..+... .
T Consensus 119 v~~~-~~~~~~d~~~l~~~~i~---~~~k~v~~~~~~nptG~~~~--~i------~~~~~~~li~D~a~~~~~~~-~--- 182 (360)
T 1w23_A 119 AAST-KANSYQSIPDFSEFQLN---ENDAYLHITSNNTIYGTQYQ--NF------PEINHAPLIADMSSDILSRP-L--- 182 (360)
T ss_dssp EEEC-GGGTSCSCCCGGGCCCC---TTEEEEEEESEETTTTEECS--SC------CCCCSSCEEEECTTTTTSSC-C---
T ss_pred eecc-cccCcCCccchHhhccC---CCCCEEEEeCCCCCcceecc--cc------cccCCceEEEechhhcCCCC-c---
Confidence 9883 3233489999988 775 67899999999999999987 22 23899999999998765432 1
Q ss_pred HHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHh------------hccccCCChhHHH
Q 013839 249 AQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIA------------RAMYGSPPVHGIL 316 (435)
Q Consensus 249 ~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~------------~~~~~~~~~~~q~ 316 (435)
++. .. .++++|+||.+|++| +||+++ +++ +++.+.... .....+++...+.
T Consensus 183 --~~~---~~---di~~~s~sK~~~~~G--~G~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (360)
T 1w23_A 183 --KVN---QF---GMIYAGAQKNLGPSG--VTVVIV---KKD----LLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIY 245 (360)
T ss_dssp --CGG---GC---SEEEEETTTTTSCTT--CEEEEE---EHH----HHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHH
T ss_pred --Ccc---cC---CEEEEEcccccCCCC--cEEEEE---cHH----HHhhcccCCcchhhhhhhhhccCCCCCCCHHHHH
Confidence 111 11 378999999999666 899974 666 554443321 1122345566666
Q ss_pred HHHHHhCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhCCCCCcccc-cc--CcceeEecCCC----H-HHHHHHhh
Q 013839 317 LVATILSDPNLKSLWID-EVKIMADRIQRKRTTLRQNLEKLGSSLNWEHI-TN--QLGMFCFSGLT----P-YQVDRLAK 387 (435)
Q Consensus 317 ~~~~~l~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~--~~g~~~~~~~~----~-~~~~~ll~ 387 (435)
++..++.... .. .+++.+++++++++.+.+.|++++. .+... .+ .+++++|+.+. . ++++. |+
T Consensus 246 ~~~~al~~~~-----~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~ 317 (360)
T 1w23_A 246 MLRNVLDWIK-----DLGGAEAIAKQNEEKAKIIYDTIDESNG--FYVGHAEKGSRSLMNVTFNLRNEELNQQFLAK-AK 317 (360)
T ss_dssp HHHHHHHHHH-----HTTHHHHHHHHHHHHHHHHHHHHHTTTT--SSEESSCGGGBCSSEEEEECSSHHHHHHHHHH-HH
T ss_pred HHHHHHHHHH-----HhcCHHHHHHHHHHHHHHHHHHHHHccC--cccccCCchhccCcEEEEEcCCCccHHHHHHH-HH
Confidence 6666664211 11 4677888999999999999988752 11222 12 35667777663 2 23344 46
Q ss_pred hccEEEeCC----C--cEEecc-CCCCcHHHHHHHHHHHHHh
Q 013839 388 EFHIYMTQD----G--RISMAG-VTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 388 ~~gI~i~pg----g--Ris~~~-~~~e~i~~~~~~l~~~l~~ 422 (435)
++||.+.++ + |++++. .+++++++++++|++++++
T Consensus 318 ~~gi~~~~~~~~~~~iRis~~~~~~~~~i~~~~~~l~~~~~~ 359 (360)
T 1w23_A 318 EQGFVGLNGHRSVGGCRASIYNAVPIDACIALRELMIQFKEN 359 (360)
T ss_dssp HTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HCCeeeecCCCCCCeEEEEecCCCCHHHHHHHHHHHHHHHhh
Confidence 689999887 2 999864 2788899999999988753
No 163
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=99.93 E-value=5.5e-24 Score=207.09 Aligned_cols=310 Identities=9% Similarity=0.020 Sum_probs=207.0
Q ss_pred CeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHH
Q 013839 51 YKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGAC 130 (435)
Q Consensus 51 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~ 130 (435)
++|+|+. | + .++..++.+.+.+... .|.+..+..++++++++++. . ++++ +++||++|+
T Consensus 9 ~~i~~~~--p-~-----~~~~~~~a~~~~~~~~---~~~~~~~~~~l~~~la~~~~-~-------~~~~--~~~~gt~al 67 (393)
T 1mdo_A 9 DFLPFSR--P-A-----MGAEELAAVKTVLDSG---WITTGPKNQELEAAFCRLTG-N-------QYAV--AVSSATAGM 67 (393)
T ss_dssp CCBCSCC--C-C-----CCHHHHHHHHHHHHHT---CCSSSHHHHHHHHHHHHHHC-C-------SEEE--EESCHHHHH
T ss_pred cccccCC--C-C-----CCHHHHHHHHHHHhcC---CcCCChHHHHHHHHHHHHhC-C-------CcEE--EecChHHHH
Confidence 4667765 3 2 2334444444444322 24456788999999999983 2 1455 899999999
Q ss_pred HHHHHHHHH-hCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCC
Q 013839 131 RLFAEFQRR-FHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTG 209 (435)
Q Consensus 131 ~~~~~~~~~-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG 209 (435)
.++ +..+ +.+||+|+++.|+|..+...++..|++++.++. +++++.+|+++++++++ +++++++++ ||||
T Consensus 68 ~~~--~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~-~~~~~~~d~~~l~~~l~---~~~~~v~~~---~~~G 138 (393)
T 1mdo_A 68 HIA--LMALGIGEGDEVITPSMTWVSTLNMIVLLGANPVMVDV-DRDTLMVTPEHIEAAIT---PQTKAIIPV---HYAG 138 (393)
T ss_dssp HHH--HHHTTCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECB-CTTTCCBCHHHHHHHCC---TTEEEECCB---CGGG
T ss_pred HHH--HHHcCCCCCCEEEeCCCccHhHHHHHHHCCCEEEEEec-cCCcCCCCHHHHHHhcC---CCceEEEEe---CCCC
Confidence 988 6666 789999999999999999999999999999998 34557899999999997 567888774 5899
Q ss_pred CCCCHHHHHHHHHHHHhcCceeeeeccCCCc-cCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecC
Q 013839 210 VDPTEEQWREISYQFKVKGHFPFFDMAYQGF-ASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVD 288 (435)
Q Consensus 210 ~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~ 288 (435)
...+ +++|.++|+++|+++|+|++|... .+.+ .. + +. .++++.|+||..+++|.|+||++ +++
T Consensus 139 ~~~~---~~~i~~l~~~~~~~li~D~a~~~g~~~~~--~~------~-~~--~d~~~~S~~k~K~l~~~~~g~~~--~~~ 202 (393)
T 1mdo_A 139 APAD---LDAIYALGERYGIPVIEDAAHATGTSYKG--RH------I-GA--RGTAIFSFHAIKNITCAEGGIVV--TDN 202 (393)
T ss_dssp CCCC---HHHHHHHHHHHTCCBCEECTTCTTCEETT--EE------T-TS--SSEEEEECCTTSSSCSSSCEEEE--ESC
T ss_pred CcCC---HHHHHHHHHHcCCeEEEECccccCCeECC--ee------c-CC--CCeEEEeCCCCCccccccceEEE--eCC
Confidence 8764 679999999999999999998753 3321 10 1 11 57889999944334556899996 434
Q ss_pred hhHHHHHHHHHHHHhhccc------------------------cCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHH
Q 013839 289 SKQAAAIRSQIQQIARAMY------------------------GSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQR 344 (435)
Q Consensus 289 ~~~~~~~~~~l~~~~~~~~------------------------~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~ 344 (435)
++ +++.+........ ...+.+...++...+ +.+++..++.++
T Consensus 203 ~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l----------~~~~~~~~~~~~ 268 (393)
T 1mdo_A 203 PQ----FADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQL----------QKLDALNARRAA 268 (393)
T ss_dssp HH----HHHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHH----------HTHHHHHHHHHH
T ss_pred HH----HHHHHHHHHhcCCcccchhhhcccccccccccccCccCCCCHHHHHHHHHHH----------HHHHHHHHHHHH
Confidence 77 6666665432111 012323222222222 223445555666
Q ss_pred HHHHHHHHHHhhCCCCCcccc--c----cCcceeEecCC-------CHHHHHHHhhhccEEEeCC---------------
Q 013839 345 KRTTLRQNLEKLGSSLNWEHI--T----NQLGMFCFSGL-------TPYQVDRLAKEFHIYMTQD--------------- 396 (435)
Q Consensus 345 ~~~~l~~~l~~~~~~~~~~~~--~----~~~g~~~~~~~-------~~~~~~~ll~~~gI~i~pg--------------- 396 (435)
+++.+.+.|++++. ... + +.+++++|+.+ +.+.+.+.|.++||.+.++
T Consensus 269 ~~~~l~~~L~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ 344 (393)
T 1mdo_A 269 IAAQYHQAMADLPF----QPLSLPSWEHIHAWHLFIIRVDEARCGITRDALMASLKTKGIGTGLHFRAAHTQKYYRERFP 344 (393)
T ss_dssp HHHHHHHHHHTSSC----EECCCCSSCEECCCSCEEEECCHHHHSSCHHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHST
T ss_pred HHHHHHHHHhcCCc----ccccCCCCCCCceeEEEEEEecccccccCHHHHHHHHHhCCCCcccccCccccChhhhccCC
Confidence 77888888887752 222 1 23445566543 4455544556789988763
Q ss_pred -----------C---cEEec-cCCCCcHHHHHHHHHHHHHhhh
Q 013839 397 -----------G---RISMA-GVTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 397 -----------g---Ris~~-~~~~e~i~~~~~~l~~~l~~~~ 424 (435)
. |+++. ..+++++++++++|+++++...
T Consensus 345 ~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~~~ 387 (393)
T 1mdo_A 345 TLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIAGQGS 387 (393)
T ss_dssp TCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHHC---
T ss_pred ccCChhHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHhcCC
Confidence 1 66664 2388999999999999876544
No 164
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*
Probab=99.93 E-value=1.3e-24 Score=216.63 Aligned_cols=325 Identities=13% Similarity=0.066 Sum_probs=216.1
Q ss_pred CeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCC---CcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCch
Q 013839 51 YKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESIS---ASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 51 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~---~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~ 127 (435)
..+.|+ |.+ . ...+.+++++...+. . ...|.+ .+|..++++++++++....+. +..++ +++||+
T Consensus 67 ~~~~lg-~~~-~----~~~p~v~~~~~~~~~-~-~~~~~~~~~~~g~~~l~~~l~~~la~~~g~---~~~~~--~~~ggt 133 (474)
T 1wyu_B 67 TFYPLG-SCT-M----KYNPKLHEEAARLFA-D-LHPYQDPRTAQGALRLMWELGEYLKALTGM---DAITL--EPAAGA 133 (474)
T ss_dssp SCCCBT-TTC-C----CCCCHHHHHHHHTTS-S-CCTTSCGGGCHHHHHHHHHHHHHHHHHHTC---SEEEC--CCSSHH
T ss_pred Cccccc-ccc-c----cCCHHHHHHHHHHHH-h-cCCCCchhhChHHHHHHHHHHHHHHHHHCC---Cceee--cChHHH
Confidence 467777 542 1 233445555555432 2 233554 567778888887776322111 11233 679999
Q ss_pred hHHHHHHHH-HH-HhCCCC-----EEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEE
Q 013839 128 GACRLFAEF-QR-RFHPES-----HIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLL 200 (435)
Q Consensus 128 ~a~~~~~~~-~~-~~~~gd-----~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~ 200 (435)
+|+.+++.. .. ...+|| +|+++.|+|+.+...++..|++++.++. .+++.+|+++|++++. +++++++
T Consensus 134 ~a~~~al~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~~~~~~~~~G~~vv~v~~--~~~~~~d~~~L~~~i~---~~t~~v~ 208 (474)
T 1wyu_B 134 HGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMAGYQVREIPS--GPEGEVDLEALKRELG---PHVAALM 208 (474)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHHHHTTCEEEEECB--CTTSSBCHHHHHHHCS---TTEEEEE
T ss_pred HHHHHHHHHHHHHHHhcCCccCCCEEEEeCCcChhhHHHHHHCCCEEEEecC--CCCCCcCHHHHHHhhC---CCceEEE
Confidence 998875322 11 235888 9999999999999999999999999987 3457899999999997 6789999
Q ss_pred eCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEeccccccccc-C---
Q 013839 201 HPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLY-G--- 276 (435)
Q Consensus 201 ~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~-G--- 276 (435)
+++| ||||.+. +++++|.++|++||+++|+|++|.....+.. .. ..+ +.++++.|++|.++.+ |
T Consensus 209 ~~~p-n~~G~~~--~~l~~i~~l~~~~g~~li~Dea~~~~~~g~~--~~---~~~----g~di~~~s~~K~~~~p~g~gG 276 (474)
T 1wyu_B 209 LTNP-NTLGLFE--RRILEISRLCKEAGVQLYYDGANLNAIMGWA--RP---GDM----GFDVVHLNLHKTFTVPHGGGG 276 (474)
T ss_dssp ECSS-CTTSCCC--TTHHHHHHHHHHHTCEEEEEGGGGGGTTTTC--CH---HHH----TCSEEECCTTTTTCCCCTTSC
T ss_pred EECC-CCCcccC--CCHHHHHHHHHHcCCEEEEeCchhhhhccCC--Cc---ccC----CCcEEEEeCccccccCCCCCC
Confidence 9997 6899872 4688999999999999999999966554321 11 111 3568888999999877 4
Q ss_pred CcccEEEEEecChhHHHHHHHHHHH-Hh------------------hccccCCChhHHHHHHHHhCChhhHHHHHHHHHH
Q 013839 277 HRVGCLSILCVDSKQAAAIRSQIQQ-IA------------------RAMYGSPPVHGILLVATILSDPNLKSLWIDEVKI 337 (435)
Q Consensus 277 ~RvG~~~~~~~~~~~~~~~~~~l~~-~~------------------~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~ 337 (435)
.|+||+++ +++ +++.+.. .. +....+.+.+++.++..++...+ .+.+++
T Consensus 277 ~~~G~~~~---~~~----l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g-----~~~l~~ 344 (474)
T 1wyu_B 277 PGSGPVGV---KAH----LAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLG-----LEGLKK 344 (474)
T ss_dssp CCCCCEEE---CGG----GGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHH-----HHHHHH
T ss_pred CCeEEEEE---cHH----HHHhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHHH-----HHHHHH
Confidence 59999974 666 5554431 00 00112345566666666664321 255777
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCccccccCccee-Eec----CCCHHHH-HHHhhhccEEEeC-------CC--cEEec
Q 013839 338 MADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMF-CFS----GLTPYQV-DRLAKEFHIYMTQ-------DG--RISMA 402 (435)
Q Consensus 338 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~-~~~----~~~~~~~-~~ll~~~gI~i~p-------gg--Ris~~ 402 (435)
..+++.++++++.+.|+++|. .+..+...+. .|+ +.+.+.+ ..|+ ++||.+.. .+ ||+++
T Consensus 345 ~~~~~~~~~~~l~~~L~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~~Gi~~~~~~~~~~~~~~lRis~~ 419 (474)
T 1wyu_B 345 AAALAVLNARYLKELLKEKGY----RVPYDGPSMHEFVAQPPEGFRALDLAKGLL-ELGFHPPTVYFPLIVKEALMVEPT 419 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC----BCSSCSSCCSCEEEBCSTTCCHHHHHHHHH-HTTCCCCEESCSTTSTTCEEECCC
T ss_pred HHHHHHHHHHHHHHHHhhcCc----EecCCCCcceEEEEEcCCCCCHHHHHHHHH-HCCccccccccccccCCEEEEEee
Confidence 788899999999999988753 3322222221 333 3355545 5554 56997531 12 99986
Q ss_pred cC-CCCcHHHHHHHHHHHHHh
Q 013839 403 GV-TTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 403 ~~-~~e~i~~~~~~l~~~l~~ 422 (435)
.. +.+++++++++|++++++
T Consensus 420 ~~~t~e~id~~~~~L~~~~~~ 440 (474)
T 1wyu_B 420 ETEAKETLEAFAEAMGALLKK 440 (474)
T ss_dssp TTSCHHHHHHHHHHHHHHHTS
T ss_pred cCCCHHHHHHHHHHHHHHHHh
Confidence 42 678999999999998865
No 165
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Probab=99.93 E-value=4.3e-25 Score=218.91 Aligned_cols=342 Identities=12% Similarity=0.024 Sum_probs=201.4
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCch
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~ 127 (435)
++...+|+..|.+...-|. .++.+++++.+++... ..|....+..+.++++++++...... ...+++. +++||+
T Consensus 59 ~g~~ylD~~~~~~~~~lGh-~~p~v~~A~~~~~~~~--~~~~~~~~~~~~~~~la~~l~~~~~~-~~~~~v~--~~~sGs 132 (451)
T 3oks_A 59 DGNRLIDLGSGIAVTTVGN-SAPKVVEAVRSQVGDF--THTCFMVTPYEGYVAVCEQLNRLTPV-RGDKRSA--LFNSGS 132 (451)
T ss_dssp TSCEEEESSHHHHTCTTCT-TCHHHHHHHHHHHTTC--SCCTTTTSCCHHHHHHHHHHHHHSSC-CSSEEEE--EESSHH
T ss_pred CCCEEEEcCCCccccccCC-CCHHHHHHHHHHHHhc--ccccCCccCCHHHHHHHHHHHHhCCc-CCCCEEE--EeCcHH
Confidence 5677899998864232222 2445555555665432 22443344445555555555221110 0034777 999999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCC--------------CeeeeeecCC--CC-CCc--------Ch
Q 013839 128 GACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQI--------------PERTYHYYDP--DS-KSL--------DF 182 (435)
Q Consensus 128 ~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~--------------~~~~v~~~~~--~~-~~~--------d~ 182 (435)
+|+.++..+......+++|++.+++|.++.......+. .+..++.... +. +++ ++
T Consensus 133 eA~~~Alk~a~~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 212 (451)
T 3oks_A 133 EAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAA 212 (451)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhHHHH
Confidence 99999853332223458999999999877654433222 2344443100 00 011 24
Q ss_pred HhHHHHhhcC-CCCcEEEEeCCCCCCCC-C-CCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcC
Q 013839 183 AALMDDIKNA-PDSSFFLLHPSAHNPTG-V-DPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDE 259 (435)
Q Consensus 183 e~l~~~i~~~-~~~~~~v~~~~p~NPtG-~-~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~ 259 (435)
+.+++.+.+. .+...++++..|.|++| . ..+++.+++|.++|++||+++|+||+|.++...+. ......+ +..
T Consensus 213 ~~~~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~---~~~~~~~-~~~ 288 (451)
T 3oks_A 213 KRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGA---MFACEHE-GID 288 (451)
T ss_dssp HHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SSGGGGG-TCC
T ss_pred HHHHHHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCcccc---chhhhhc-CCC
Confidence 4444555421 12334444446666654 4 44677799999999999999999999998865431 1111111 222
Q ss_pred CeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHH
Q 013839 260 HLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMA 339 (435)
Q Consensus 260 ~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~ 339 (435)
.+ +.||||.++. |+|+||+++ +++ +++.+.......+.+.+.++|.++.++|+... + +.+.
T Consensus 289 pd---i~t~sK~l~~-G~~iG~v~~---~~~----~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~------~--~~~~ 349 (451)
T 3oks_A 289 PD---LIVTAKGIAG-GLPLSAVTG---RAE----IMDSPHVSGLGGTYGGNPIACAAALATIETIE------S--EGLV 349 (451)
T ss_dssp CS---EEEECGGGGT-TSSCEEEEE---EHH----HHTCSCTTSBCCSSSSCHHHHHHHHHHHHHHH------H--TTHH
T ss_pred CC---eeeehhhhhC-CcceEEEEE---CHH----HHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHh------h--hhHH
Confidence 22 2389999984 999999964 777 77777655555667888899988888875321 1 1233
Q ss_pred HHHHHHHHHHHHHHH----hhCCCCCccccccCcceeEecCC--------C---HHHHHHHhhhccEEEeCCC------c
Q 013839 340 DRIQRKRTTLRQNLE----KLGSSLNWEHITNQLGMFCFSGL--------T---PYQVDRLAKEFHIYMTQDG------R 398 (435)
Q Consensus 340 ~~~~~~~~~l~~~l~----~~~~~~~~~~~~~~~g~~~~~~~--------~---~~~~~~ll~~~gI~i~pgg------R 398 (435)
++++++.+++++.|+ .++. +....+. |.|+|+.+ + ...+.+.+.++||.+.|+| |
T Consensus 350 ~~~~~~~~~l~~~L~~~~~~~~~---~~~~~~~-G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iR 425 (451)
T 3oks_A 350 ARAQQIEKIMKDRLGRLQAEDDR---IGDVRGR-GAMIAMELVKAGTTEPDADLTKALCAGAHAAGVIVLSCGTYGNVVR 425 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTT---EEEEEEE-TTEEEEEEBSTTSCCBCHHHHHHHHHHHHHTTEECEEECTTSCEEE
T ss_pred HHHHHHHHHHHHHHHHHHhhCCC---eEEEEEe-eEEEEEEEecCccCCCCHHHHHHHHHHHHhCCcEEecCCCCCCEEE
Confidence 444444444444444 3332 2233333 44555533 1 2234333456899999864 7
Q ss_pred EEecc-CCCCcHHHHHHHHHHHHHh
Q 013839 399 ISMAG-VTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 399 is~~~-~~~e~i~~~~~~l~~~l~~ 422 (435)
|+++. .+++++++++++|++++++
T Consensus 426 i~~~~~~t~e~i~~~l~~l~~~l~~ 450 (451)
T 3oks_A 426 FLPPLSIGDDLLNEGLDVLEEVLRG 450 (451)
T ss_dssp ECCCTTCCHHHHHHHHHHHHHHHHC
T ss_pred EECCCCCCHHHHHHHHHHHHHHHhh
Confidence 76543 3889999999999998863
No 166
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}
Probab=99.93 E-value=1.1e-24 Score=216.90 Aligned_cols=349 Identities=11% Similarity=0.001 Sum_probs=212.7
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCc
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSG 126 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg 126 (435)
.++...||+..|.....-|. .++.+++++.+++... ...|....+..+.++++++.+..... ...+++. +++||
T Consensus 52 ~~G~~ylD~~s~~~~~~lGh-~~p~v~~A~~~~~~~~-~~~~~~~~~~~~~~~~lae~l~~~~~--~~~~~v~--~~~sG 125 (472)
T 3hmu_A 52 SEGEEILDAMAGLWCVNIGY-GRDELAEVAARQMREL-PYYNTFFKTTHVPAIALAQKLAELAP--GDLNHVF--FAGGG 125 (472)
T ss_dssp TTCCEEECTTHHHHTCTTCB-CCHHHHHHHHHHHHHC-SCCCSSSSEECHHHHHHHHHHHHHSC--TTEEEEE--EESSH
T ss_pred CCCCEEEECCCchhhccCCC-CCHHHHHHHHHHHHhc-cccccccccCCHHHHHHHHHHHHhCC--CCCCEEE--EeCCH
Confidence 35678999998854232332 2444555555555422 11233323333444444444421110 1135777 99999
Q ss_pred hhHHHHHHHHHHHh------CCCCEEEEcCCCChhhHHHHhhCCCC------------eeeeeecC--C-CCCCcC----
Q 013839 127 TGACRLFAEFQRRF------HPESHIYFPDPTWSNHHNIWRDAQIP------------ERTYHYYD--P-DSKSLD---- 181 (435)
Q Consensus 127 ~~a~~~~~~~~~~~------~~gd~Vlv~~p~y~~~~~~~~~~g~~------------~~~v~~~~--~-~~~~~d---- 181 (435)
++|++.+..+.... .++++|++.+|+|.++.......+.. +..++... . +++ .|
T Consensus 126 seA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~-~~~~~~ 204 (472)
T 3hmu_A 126 SEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGD-MDPEEF 204 (472)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSEEEECCCCHHHHCTT-CCHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhccccCCCCCcEEeCCCccccCCcc-cCHHHH
Confidence 99999985433221 24689999999998876544433332 22333200 0 111 23
Q ss_pred ----hHhHHHHhhcC-CCCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHh
Q 013839 182 ----FAALMDDIKNA-PDSSFFLLHPSAHNPTGVDP-TEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIF 255 (435)
Q Consensus 182 ----~e~l~~~i~~~-~~~~~~v~~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~ 255 (435)
+++|++.+.+. ++++++|+++.++|++|.+. +++.+++|.++|++||+++|+||+|.+|+..+. ......+
T Consensus 205 ~~~~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~---~~a~~~~ 281 (472)
T 3hmu_A 205 GLARARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGN---WFGTQTM 281 (472)
T ss_dssp HHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS---SCHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCcccCc---cchhHHh
Confidence 78888888642 24567888877888888866 888999999999999999999999998876541 1122222
Q ss_pred hhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHH--hhccccCCChhHHHHHHHHhCChhhHHHHHH
Q 013839 256 LEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQI--ARAMYGSPPVHGILLVATILSDPNLKSLWID 333 (435)
Q Consensus 256 ~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~ 333 (435)
+...+++ ++||.++..|+|+||+++ +++ +++.+... ....+.+.+.+++.++.++|+... +
T Consensus 282 -~v~pdi~---t~sK~l~gg~~plG~v~~---~~~----i~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~------~ 344 (472)
T 3hmu_A 282 -GIRPHIM---TIAKGLSSGYAPIGGSIV---CDE----VAHVIGKDEFNHGYTYSGHPVAAAVALENLRILE------E 344 (472)
T ss_dssp -TCCCSEE---EECGGGTTTSSCCEEEEE---EHH----HHHHHTTSCBCCCCTTTTCHHHHHHHHHHHHHHH------H
T ss_pred -CCCCcee---eechhhhcCCcceEEEEE---CHH----HHHhcccCCccccCCCCCCHHHHHHHHHHHHHHH------H
Confidence 2222233 689999855599999974 788 77777321 223356778888888888875321 1
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHhhCCCCCccccccCcceeEec-CCC--------------HHHHHHHhhhccEEEeCCC
Q 013839 334 EVKIMADRIQ-RKRTTLRQNLEKLGSSLNWEHITNQLGMFCFS-GLT--------------PYQVDRLAKEFHIYMTQDG 397 (435)
Q Consensus 334 ~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~-~~~--------------~~~~~~ll~~~gI~i~pgg 397 (435)
+...++++ ++.+++++.|+++.....+....+.+.++.+. .-+ ...+.+.+.++||.+.|+|
T Consensus 345 --~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g 422 (472)
T 3hmu_A 345 --ENILDHVRNVAAPYLKEKWEALTDHPLVGEAKIVGMMASIALTPNKASRAKFASEPGTIGYICRERCFANNLIMRHVG 422 (472)
T ss_dssp --TTHHHHHHHTHHHHHHHHHHGGGGSTTEEEEEEETTEEEEEECSCGGGTCCBSSCTTHHHHHHHHHHHHTTBCCEEET
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCceEEEEEecCccccccccchhHHHHHHHHHHHHHCCcEEEecC
Confidence 24455666 66777777776653111233444555544332 111 2334333456899999876
Q ss_pred ---cEEec-cCCCCcHHHHHHHHHHHHHhhh
Q 013839 398 ---RISMA-GVTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 398 ---Ris~~-~~~~e~i~~~~~~l~~~l~~~~ 424 (435)
||+.. ..+++++++++++|++++++..
T Consensus 423 ~~iRi~p~~~~t~e~i~~~l~~l~~~l~~~~ 453 (472)
T 3hmu_A 423 DRMIISPPLVITPAEIDEMFVRIRKSLDEAQ 453 (472)
T ss_dssp TEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 78732 3489999999999999987644
No 167
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}
Probab=99.93 E-value=1.2e-24 Score=214.24 Aligned_cols=323 Identities=13% Similarity=0.062 Sum_probs=201.2
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCch
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~ 127 (435)
++...|||..|.+.+.-|+ .++.+++++.+++..+....|.. .-..++.+.+++++ + . ++++. +++||+
T Consensus 50 ~g~~~iD~~~~~~~~~lG~-~~p~v~~a~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~-~-~-----~~~v~--~~~~g~ 118 (424)
T 2e7u_A 50 DGNRYLDYVMSWGPLILGH-AHPKVLARVRETLERGLTFGAPS-PLEVALAKKVKRAY-P-F-----VDLVR--FVNSGT 118 (424)
T ss_dssp TCCEEEESSGGGTTCTTCB-TCHHHHHHHHHHHHTCSCCSSCC-HHHHHHHHHHHHHC-T-T-----CCEEE--EESSHH
T ss_pred CCCEEEEccccccccccCC-CCHHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHHhC-C-C-----CCEEE--EeCCHH
Confidence 4567899998864222232 34445555555554432223322 22345666666654 2 1 46777 899999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHh-h-------------CCC------CeeeeeecCCCCCCcChHhHHH
Q 013839 128 GACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWR-D-------------AQI------PERTYHYYDPDSKSLDFAALMD 187 (435)
Q Consensus 128 ~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~-~-------------~g~------~~~~v~~~~~~~~~~d~e~l~~ 187 (435)
+|+.++..+...+.+++.|++.+|+|.++...+. . .|. +++.++. .|+++|++
T Consensus 119 ea~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-------~d~~~le~ 191 (424)
T 2e7u_A 119 EATMSALRLARGYTGRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEY-------NDPEGLRE 191 (424)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECT-------TCHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCC-------CCHHHHHH
Confidence 9998885332224456889999999987654221 1 121 1222221 38899999
Q ss_pred HhhcCCCCcEEEEeCCCCCC-CCCCC-CHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEE
Q 013839 188 DIKNAPDSSFFLLHPSAHNP-TGVDP-TEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCA 265 (435)
Q Consensus 188 ~i~~~~~~~~~v~~~~p~NP-tG~~~-~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 265 (435)
.+++.++++++|++ +|+|| ||..+ +++.+++|.++ ++||+++|+||+|.++..+. ......+ +...+ +
T Consensus 192 ~l~~~~~~~~~vi~-ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~~~g~----~~~~~~~-~~~~d---i 261 (424)
T 2e7u_A 192 VLKRRGEEIAAIIF-EPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGFRLAF----GGATELL-GLKPD---L 261 (424)
T ss_dssp HHHHHGGGEEEEEE-CSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTTTSST----THHHHHH-TCCCS---E
T ss_pred HHHhCCCCEEEEEE-eCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCccccccch----hHHHHHh-CCCcc---h
Confidence 88742224555555 56554 89765 79999999999 99999999999999873321 1222222 22222 2
Q ss_pred ecccccccccCCcccEEEEEecChhHHHHHHHHHHHHh---hccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q 013839 266 QSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIA---RAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRI 342 (435)
Q Consensus 266 ~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~ 342 (435)
.|+||.++ .|+|+||+++ +++ +++.+.... ...+.+.+.+++.++.++|+... + .+...+++
T Consensus 262 ~s~sK~l~-~G~~~G~~~~---~~~----~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~------~-~~~~~~~~ 326 (424)
T 2e7u_A 262 VTLGKILG-GGLPAAAYAG---RRE----IMEKVAPLGPVYQAGTLSGNPLAMAAGLATLELLE------E-NPGYYAYL 326 (424)
T ss_dssp EEECGGGG-TTSSCEEEEE---CHH----HHTTBTTTSSBCCCCTTCSCHHHHHHHHHHHHHHH------H-CTHHHHHH
T ss_pred hhhhhhhh-CCcceEEEEE---cHH----HHhhhcccCCcccCCCCCCCHHHHHHHHHHHHHHH------h-ccHHHHHH
Confidence 38999999 6999999974 777 776665421 12345677788888777775321 1 13456667
Q ss_pred HHHHHHHHHHHHhh----CCCCCccccccCcceeEecCCC-----------------H-HHHHHHhhhccEEEeCCC--c
Q 013839 343 QRKRTTLRQNLEKL----GSSLNWEHITNQLGMFCFSGLT-----------------P-YQVDRLAKEFHIYMTQDG--R 398 (435)
Q Consensus 343 ~~~~~~l~~~l~~~----~~~~~~~~~~~~~g~~~~~~~~-----------------~-~~~~~ll~~~gI~i~pgg--R 398 (435)
+++++++.+.|+++ +.. ...++. |.|+|+.+. . ++...+ .++||.+.|++ |
T Consensus 327 ~~~~~~l~~~L~~~~~~~~~~---~~~~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gv~v~~~~~~~ 401 (424)
T 2e7u_A 327 EDLGARLEAGLKEVLKEKGLP---HTVNRV-GSMITVFFTEGPVVTFQDARRTDTELFKRFFHGL-LDRGIYWPPSNFEA 401 (424)
T ss_dssp HHHHHHHHHHHHHHHHHTTCC---CEEEEE-TTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHH-HTTTEECCSSSSSC
T ss_pred HHHHHHHHHHHHHHHHhCCCc---eEEEee-ceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHH-HHCCeEEeccCCCc
Confidence 77777777777664 421 123344 456776442 1 233555 46899999986 4
Q ss_pred --EEeccCCCCcHHHHHHHHHHH
Q 013839 399 --ISMAGVTTGNVNYLANAIHEV 419 (435)
Q Consensus 399 --is~~~~~~e~i~~~~~~l~~~ 419 (435)
+++. .+++++++++++|+++
T Consensus 402 ~~~~~~-~t~~~i~~~l~~l~~~ 423 (424)
T 2e7u_A 402 AFLSVA-HREEDVEKTLEALRKA 423 (424)
T ss_dssp EECCTT-CCHHHHHHHHHHHHHH
T ss_pred eEeecc-CCHHHHHHHHHHHHHh
Confidence 4433 3889999999999875
No 168
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=99.93 E-value=9.1e-24 Score=206.48 Aligned_cols=212 Identities=9% Similarity=0.012 Sum_probs=153.4
Q ss_pred ccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhh----CCCCee
Q 013839 93 VSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRD----AQIPER 168 (435)
Q Consensus 93 g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~----~g~~~~ 168 (435)
...+|++.++++. +. ++++ ++++|++|+.++ +.+++.+||+|++++|+|.++...+.. .|++++
T Consensus 82 ~~~~l~~~la~~~-g~-------~~~~--~~~sG~~Ai~~a--l~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~ 149 (414)
T 3ndn_A 82 TVSVFEERLRLIE-GA-------PAAF--ATASGMAAVFTS--LGALLGAGDRLVAARSLFGSCFVVCSEILPRWGVQTV 149 (414)
T ss_dssp HHHHHHHHHHHHH-TC-------SEEE--EESSHHHHHHHH--HHTTCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEE
T ss_pred HHHHHHHHHHHHH-CC-------CcEE--EECCHHHHHHHH--HHHHhCCCCEEEEcCCccchHHHHHHHHHHHcCcEEE
Confidence 3456777777776 32 2444 799999998887 777789999999999999998776644 899998
Q ss_pred eeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCccc
Q 013839 169 TYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKD 248 (435)
Q Consensus 169 ~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~ 248 (435)
.++.. |+++|++++. +++++|++++|+||||.+.+ +++|.++|++||+++|+|++|.......
T Consensus 150 ~v~~~-------d~~~l~~ai~---~~t~~v~le~p~NptG~~~~---l~~i~~la~~~g~~livDe~~~~~~~~~---- 212 (414)
T 3ndn_A 150 FVDGD-------DLSQWERALS---VPTQAVFFETPSNPMQSLVD---IAAVTELAHAAGAKVVLDNVFATPLLQQ---- 212 (414)
T ss_dssp EECTT-------CHHHHHHHTS---SCCSEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTHHHHCC----
T ss_pred EeCCC-------CHHHHHHhcC---CCCeEEEEECCCCCCCcccc---HHHHHHHHHHcCCEEEEECCCcccccCC----
Confidence 88751 7899999997 67889999999999999875 6699999999999999999986322110
Q ss_pred HHHHHHhhhcCCeEEEEecccccccccC-CcccEEEEEecChhHHHHHHH-HHHHHhhccccCCChhHHHHHHHHhCChh
Q 013839 249 AQAIRIFLEDEHLIGCAQSYAKSMGLYG-HRVGCLSILCVDSKQAAAIRS-QIQQIARAMYGSPPVHGILLVATILSDPN 326 (435)
Q Consensus 249 ~~~~~~~~~~~~~~i~~~s~SK~~g~~G-~RvG~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~q~~~~~~l~~~~ 326 (435)
+ .. ...++++.|+||.++.+| +++|++++ +++ .+. .++..........+.....++...+.
T Consensus 213 --~----~~-~g~div~~S~sK~l~~~G~~~~G~vv~---~~~----~~~~~l~~~~~~~g~~~~~~~a~~~~~~l~--- 275 (414)
T 3ndn_A 213 --G----FP-LGVDVVVYSGTKHIDGQGRVLGGAILG---DRE----YIDGPVQKLMRHTGPAMSAFNAWVLLKGLE--- 275 (414)
T ss_dssp --C----GG-GTCSEEEEETTTTTTCSSCCCCEEEEE---CHH----HHTTHHHHHHHHHCCCCCHHHHHHHHHHGG---
T ss_pred --c----hh-cCCCeEeccCCccccCCCCceEEEEEE---CHH----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---
Confidence 0 01 134688999999999888 88999864 666 443 45543333334445544443333332
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 013839 327 LKSLWIDEVKIMADRIQRKRTTLRQNLEKLG 357 (435)
Q Consensus 327 l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 357 (435)
.+....++..++++.+.+.|++.+
T Consensus 276 -------~l~~r~~~~~~~a~~l~~~L~~~p 299 (414)
T 3ndn_A 276 -------TLAIRVQHSNASAQRIAEFLNGHP 299 (414)
T ss_dssp -------GHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred -------HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 234455666777788888887764
No 169
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}
Probab=99.93 E-value=2e-24 Score=208.77 Aligned_cols=313 Identities=10% Similarity=-0.004 Sum_probs=206.3
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhH
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGA 129 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a 129 (435)
...++|+.|.| + ... +.+++...... ..|.+..+..++++++++++... +++ ++.||++|
T Consensus 6 ~~~~~l~~~~~-~-----~~~--~~~~~~~~~~~--~~~~~~~~~~~l~~~la~~~~~~--------~~~--~~~~gt~a 65 (374)
T 3uwc_A 6 VPYSYLERQFA-D-----IEP--YLNDLREFIKT--ADFTLGAELEKFEKRFAALHNAP--------HAI--GVGTGTDA 65 (374)
T ss_dssp BCSCCHHHHTS-S-----CHH--HHHHHHHHHHH--TCCSSCHHHHHHHHHHHHHTTCS--------EEE--EESCHHHH
T ss_pred ceeeccccCCC-C-----chH--HHHHHHHHHHc--CCcccChhHHHHHHHHHHHhCCC--------cEE--EeCCHHHH
Confidence 45778888885 1 122 33333333221 23777789999999999998322 344 79999999
Q ss_pred HHHHHHHHHH-hCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCC
Q 013839 130 CRLFAEFQRR-FHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPT 208 (435)
Q Consensus 130 ~~~~~~~~~~-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPt 208 (435)
+.++ +..+ +.+||+|+++.|+|..+...++..|++++.++.. +++.+|++++++++. +++++++ |+|||
T Consensus 66 ~~~~--~~~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~~~---~~~~~v~---~~n~~ 135 (374)
T 3uwc_A 66 LAMS--FKMLNIGAGDEVITCANTFIASVGAIVQAGATPVLVDSE--NGYVIDPEKIEAAIT---DKTKAIM---PVHYT 135 (374)
T ss_dssp HHHH--HHHTTCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBC--TTSSBCGGGTGGGCC---TTEEEEC---CBCGG
T ss_pred HHHH--HHHcCCCCCCEEEECCCccHHHHHHHHHcCCEEEEEecC--CCCCcCHHHHHHhCC---CCceEEE---EeCCc
Confidence 8888 6666 7899999999999999999999999999999883 568899999999887 5677776 79999
Q ss_pred CCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEeccc--ccccccCCcccEEEEEe
Q 013839 209 GVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYA--KSMGLYGHRVGCLSILC 286 (435)
Q Consensus 209 G~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~S--K~~g~~G~RvG~~~~~~ 286 (435)
|...+ +++|.++|++||+++|+|++|..+...+. . . .... .++++.|+| |.++.+|. .|+++ +
T Consensus 136 G~~~~---~~~i~~~~~~~~~~li~D~~~~~g~~~~~--~--~---~~~~--~d~~~~s~~~~K~l~~~g~-~g~~~--~ 200 (374)
T 3uwc_A 136 GNIAD---MPALAKIAKKHNLHIVEDACQTILGRIND--K--F---VGSW--GQFACFSLHPLKNLNVWSD-AGVII--T 200 (374)
T ss_dssp GCCCC---HHHHHHHHHHTTCEEEEECTTCTTCEETT--E--E---TTSS--SSEEEEECSSSSSSCCSSC-CEEEE--E
T ss_pred CCcCC---HHHHHHHHHHcCCEEEEeCCCccCceeCC--e--e---cccc--ccEEEEeCCCCCcCCccce-eEEEE--e
Confidence 99765 66899999999999999999875432111 0 0 1111 256677766 99985465 67775 4
Q ss_pred cChhHHHHHHHHHHHHhhcc------------ccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013839 287 VDSKQAAAIRSQIQQIARAM------------YGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLE 354 (435)
Q Consensus 287 ~~~~~~~~~~~~l~~~~~~~------------~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~ 354 (435)
.+++ +.+.+....... ....+.+.+.+....+ +.+++..++.+++.+.+.+.|+
T Consensus 201 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~----------~~~~~~~~~~~~~~~~l~~~l~ 266 (374)
T 3uwc_A 201 HSDE----YAEKLRLYRNHGLINRDVCVEYGINCRMDTIQAVIANRLM----------NQLETITEKRRGIAHLYDQSFV 266 (374)
T ss_dssp SCHH----HHHHHHHHTBTTEEETTEESSCCCBCBCCHHHHHHHHHHG----------GGHHHHHHHHHHHHHHHHHHTG
T ss_pred CCHH----HHHHHHHHHhcCccccCccccccccCCCCHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhc
Confidence 4566 666565543210 0111222221111111 2234566667777788888887
Q ss_pred hhCCCCCcccc-ccCcceeEe----c-CCCHHHHHHHhhhccEEEeCCC-------------------------------
Q 013839 355 KLGSSLNWEHI-TNQLGMFCF----S-GLTPYQVDRLAKEFHIYMTQDG------------------------------- 397 (435)
Q Consensus 355 ~~~~~~~~~~~-~~~~g~~~~----~-~~~~~~~~~ll~~~gI~i~pgg------------------------------- 397 (435)
+++.. +... .+.++...| + ..+.+.+.+.|.++||.+.++.
T Consensus 267 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 344 (374)
T 3uwc_A 267 DLSEF--IDVPVRREGVYHVFHIYVLRVKYRDQLFQYLKDNGIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAVI 344 (374)
T ss_dssp GGTTT--EECCCCCTTEECCCSSEEEEETTHHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHHHHEE
T ss_pred cCCCe--EEeccCCCCCceeeEEEEEEcCCHHHHHHHHHHCCCccccCCCCccccChhhhhcCCccCCCccHHHHHhCEE
Confidence 76510 1221 122221222 1 2255556555567899987651
Q ss_pred cEEecc-CCCCcHHHHHHHHHHHHHhh
Q 013839 398 RISMAG-VTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 398 Ris~~~-~~~e~i~~~~~~l~~~l~~~ 423 (435)
|+++.. .+++++++++++|++++++.
T Consensus 345 rl~~~~~~t~edi~~~~~~l~~~l~~~ 371 (374)
T 3uwc_A 345 TLPAHPYLTEEEINYIIKKVREFYLEK 371 (374)
T ss_dssp EECCCTTSCHHHHHHHHHHHHHHHHTT
T ss_pred EccCCCCCCHHHHHHHHHHHHHHHHhh
Confidence 565432 47899999999999998753
No 170
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3
Probab=99.93 E-value=2.9e-24 Score=204.24 Aligned_cols=246 Identities=13% Similarity=0.059 Sum_probs=169.0
Q ss_pred HHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHH----hhCCCCeeeee
Q 013839 96 KMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIW----RDAQIPERTYH 171 (435)
Q Consensus 96 ~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~v~ 171 (435)
++++.+++++. . ++.+ ++.+|++|+.++ +.+++.+||+|++++|+|..+...+ +..|++++.++
T Consensus 2 ~l~~~la~~~g-~------~~~i---~~~sG~~a~~~~--~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 69 (331)
T 1pff_A 2 ALEGKIAKLEH-A------EACA---ATASGMGAIAAS--VWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFID 69 (331)
T ss_dssp HHHHHHHHHHT-C------SEEE---EESSHHHHHHHH--HHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEEC
T ss_pred hHHHHHHHHhC-C------CeEE---EeCChHHHHHHH--HHHhcCCCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeC
Confidence 58999999983 2 1233 466779999888 6666889999999999999887665 45788888776
Q ss_pred ecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHh-cCceeeeeccCCCccCCCCcccHH
Q 013839 172 YYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKV-KGHFPFFDMAYQGFASGDLDKDAQ 250 (435)
Q Consensus 172 ~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~-~~~~vi~Deay~~~~~~~~~~~~~ 250 (435)
. .|++++++.++ ++++++++++|+||||..++ +++|.++|++ ||+++|+|++|..+....
T Consensus 70 ~-------~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~---~~~i~~~~~~~~~~~li~D~a~~~~~~~~------ 130 (331)
T 1pff_A 70 M-------AVPGNIEKHLK---PNTRIVYFETPANPTLKVID---IEDAVKQARKQKDILVIVDNTFASPILTN------ 130 (331)
T ss_dssp T-------TSTTHHHHTCC---TTEEEEEEESSCTTTCCCCC---HHHHHHHHTTSSSCEEEEECTTTHHHHCC------
T ss_pred C-------CCHHHHHHhhc---CCCeEEEEECCCCCcCcccC---HHHHHHHHhhhcCCEEEEECCCcccccCC------
Confidence 4 37889999887 67899999999999999986 6799999999 999999999987544321
Q ss_pred HHHHhhhcCCeEEEEecccccccccCCc-ccEEEEEecCh-hHHHHHHHHHHHHhhc-cccCCChhHHHHHHHHhCChhh
Q 013839 251 AIRIFLEDEHLIGCAQSYAKSMGLYGHR-VGCLSILCVDS-KQAAAIRSQIQQIARA-MYGSPPVHGILLVATILSDPNL 327 (435)
Q Consensus 251 ~~~~~~~~~~~~i~~~s~SK~~g~~G~R-vG~~~~~~~~~-~~~~~~~~~l~~~~~~-~~~~~~~~~q~~~~~~l~~~~l 327 (435)
+. + .+.++++.|+||.++.+|.| +||+++ ++ + +++.++..... ...+.+.+.+.++...+..
T Consensus 131 ~~----~-~~~d~~~~s~~K~~~~~~~r~~G~~~~---~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~--- 195 (331)
T 1pff_A 131 PL----D-LGVDIVVHSATKYINGHTDVVAGLVCS---RADI----IAKVKSQGIKDITGAIISPHDAWLITRGTLT--- 195 (331)
T ss_dssp GG----G-GTCSEEEEETTTTTSSSSSCCCEEEEE---CHHH----HHHHHHTCCCCCCCCCCCHHHHHHHHHHHHH---
T ss_pred hh----h-cCCcEEEEECccccCCCCCceEEEEEe---CcHH----HHHHHHHHHHhhcCCCCCHHHHHHHHcCcch---
Confidence 11 1 24689999999999999999 789964 66 7 77777775544 3456677776665555431
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC------C-----CCccccc----cCcceeEecCCCHHHHHHHhhhccEE
Q 013839 328 KSLWIDEVKIMADRIQRKRTTLRQNLEKLGS------S-----LNWEHIT----NQLGMFCFSGLTPYQVDRLAKEFHIY 392 (435)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~------~-----~~~~~~~----~~~g~~~~~~~~~~~~~~ll~~~gI~ 392 (435)
.....++..++.+.+.+.+++... + .++.+.. ..++++.+.-.+.+.+.+++++.||.
T Consensus 196 -------~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~ 268 (331)
T 1pff_A 196 -------LDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVDGLEKAKKVLDNCHVV 268 (331)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECSSHHHHHHHHHTCSSS
T ss_pred -------HHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCHHHHHHHHHhCCCc
Confidence 122223334444444455543210 0 0112211 13444443322666777777889996
Q ss_pred Ee
Q 013839 393 MT 394 (435)
Q Consensus 393 i~ 394 (435)
+.
T Consensus 269 ~~ 270 (331)
T 1pff_A 269 SL 270 (331)
T ss_dssp EE
T ss_pred ee
Confidence 53
No 171
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}
Probab=99.93 E-value=2.7e-24 Score=211.91 Aligned_cols=338 Identities=13% Similarity=0.051 Sum_probs=197.5
Q ss_pred CCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCch
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGT 127 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~ 127 (435)
+++..+|+..|...+.-|. .++++++++.+++.......| +.....+|.+.+++++. . .+++. +++||+
T Consensus 51 ~g~~ylD~~~~~~~~~lG~-~~p~v~~A~~~~~~~~~~~~~-~~~~~~~la~~l~~~~~--~-----~~~v~--~~~sGs 119 (429)
T 4e77_A 51 DGKAYIDYVGSWGPMILGH-NHPAIRQAVIEAVERGLSFGA-PTEMEVKMAQLVTDLVP--T-----MDMVR--MVNSGT 119 (429)
T ss_dssp TCCEEEESSGGGTTCTTCB-TCHHHHHHHHHHHTTCSCCSS-CCHHHHHHHHHHHHHST--T-----CSEEE--EESSHH
T ss_pred CCCEEEECCCchhccccCC-CCHHHHHHHHHHHHhCcccCC-CCHHHHHHHHHHHhhCC--C-----CCEEE--EeCcHH
Confidence 5678999999874232222 244555555566654323334 33455677777777763 1 45777 999999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHh-hCC--CCeeeeeecC-------CCC---CCcChHhHHHHhhcCCC
Q 013839 128 GACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWR-DAQ--IPERTYHYYD-------PDS---KSLDFAALMDDIKNAPD 194 (435)
Q Consensus 128 ~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~-~~g--~~~~~v~~~~-------~~~---~~~d~e~l~~~i~~~~~ 194 (435)
+|+.++..+.....+++.|++.+++|.+...... ..+ ......+... ... ...|+++|++++++.++
T Consensus 120 ea~~~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~ 199 (429)
T 4e77_A 120 EATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTYNDLASVRQAFEQYPQ 199 (429)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEETTCCCC------------------CCCTTSCGGGGTTEEEECTTCHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhhCCCEEEEEcCccCCCChhhhhhcCCcccccCCCCcCCCCCccCCceeecCCCCHHHHHHHHHhcCC
Confidence 9999985433333466899999999977654211 111 0000000000 000 01288999999986544
Q ss_pred CcEEEEeCCCCCCC-CCCC-CHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccc
Q 013839 195 SSFFLLHPSAHNPT-GVDP-TEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSM 272 (435)
Q Consensus 195 ~~~~v~~~~p~NPt-G~~~-~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~ 272 (435)
++++|++ +|+||+ |... +.+.+++|.++|++||+++|+||+|.+| ..+. ......+ +...+ +.|+||.+
T Consensus 200 ~~~~vi~-ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~-r~g~---~~~~~~~-~~~pd---i~t~sK~~ 270 (429)
T 4e77_A 200 EVACIIV-EPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGF-RVAL---AGAQDYY-HVIPD---LTCLGKII 270 (429)
T ss_dssp TEEEEEE-CSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBT-TTBT---TCHHHHT-TCCCS---EEEEEGGG
T ss_pred CEEEEEE-CCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCc-ccCc---chHHHhc-CCCCC---eeeecccc
Confidence 5555554 555555 4443 3556999999999999999999999988 3321 1122222 22122 34899999
Q ss_pred cccCCcccEEEEEecChhHHHHHHHHHHHHh---hccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 013839 273 GLYGHRVGCLSILCVDSKQAAAIRSQIQQIA---RAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTL 349 (435)
Q Consensus 273 g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l 349 (435)
+ +|+|+||+++ +++ +++.+.... ...+.+.+.+++.++.++|+.... ++..++.++..+..++.|
T Consensus 271 ~-~G~~~G~~~~---~~~----~~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~----~~~~~~~~~~~~~l~~~L 338 (429)
T 4e77_A 271 G-GGMPVGAFGG---RRE----VMNALAPTGPVYQAGTLSGNPIAMAAGFACLTEISQ----VGVYETLTELTDSLATGL 338 (429)
T ss_dssp G-TTSCCEEEEE---CHH----HHTTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHTS----TTHHHHHHHHHHHHHHHH
T ss_pred c-CCCCeEEEEE---CHH----HHHHhccCCCccccCCCCCCHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHHHHHH
Confidence 9 8999999964 888 777665421 233456788888887777752110 022222333333333333
Q ss_pred HHHHHhhCCCCCccccccCcceeEecCC--C-----------------HHHHHHHhhhccEEEeCCC--cEEec-cCCCC
Q 013839 350 RQNLEKLGSSLNWEHITNQLGMFCFSGL--T-----------------PYQVDRLAKEFHIYMTQDG--RISMA-GVTTG 407 (435)
Q Consensus 350 ~~~l~~~~~~~~~~~~~~~~g~~~~~~~--~-----------------~~~~~~ll~~~gI~i~pgg--Ris~~-~~~~e 407 (435)
.+.+..++. ....+..|.|+|+.+ . .++...+ .++||.+.+++ |+.+. ..+++
T Consensus 339 ~~~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gi~v~~~~~~~~~~~~~~t~e 413 (429)
T 4e77_A 339 RHAAKEENI----PLVVNHVGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLM-LEEGVYLAPSAFEAGFMSLAHSNE 413 (429)
T ss_dssp HHHHHHTTC----CCEEEEETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHH-HHTTEECCSSTTSCEECCTTCCHH
T ss_pred HHHHHhCCC----ceEEEEeeeEEEEEEccCcccccccccccccHHHHHHHHHHH-HHCCeEEeecCCCCEEEeccCCHH
Confidence 333334443 222233455666543 1 3344555 45799999986 55442 23889
Q ss_pred cHHHHHHHHHHHHHh
Q 013839 408 NVNYLANAIHEVTRS 422 (435)
Q Consensus 408 ~i~~~~~~l~~~l~~ 422 (435)
++++++++|++++++
T Consensus 414 ~i~~~l~~l~~~l~~ 428 (429)
T 4e77_A 414 DIQKTVNAARRCFAK 428 (429)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998753
No 172
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B
Probab=99.93 E-value=5.8e-24 Score=207.50 Aligned_cols=278 Identities=13% Similarity=0.075 Sum_probs=192.9
Q ss_pred CcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHH----HhhCCCC
Q 013839 91 ASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNI----WRDAQIP 166 (435)
Q Consensus 91 ~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~----~~~~g~~ 166 (435)
..+..+|++++++++... +.++ +.+|++|+.++ +. ++.+||+|++++|+|.+.... ++..|++
T Consensus 66 ~p~~~~l~~~la~~~g~~-------~~i~---~~sG~~ai~~~--~~-l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~~ 132 (403)
T 3cog_A 66 NPTRNCLEKAVAALDGAK-------YCLA---FASGLAATVTI--TH-LLKAGDQIICMDDVYGGTNRYFRQVASEFGLK 132 (403)
T ss_dssp CHHHHHHHHHHHHHHTCS-------EEEE---ESCHHHHHHHH--HT-TSCTTCEEEEESSCCHHHHHHHHHTGGGGTCE
T ss_pred CchHHHHHHHHHHHhCCC-------cEEE---ECCHHHHHHHH--HH-HhCCCCEEEEeCCCcchHHHHHHHHHHHcCCE
Confidence 356789999999998332 2344 56667888887 55 788999999999999875543 3567888
Q ss_pred eeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcC-ceeeeeccCCCccCCCC
Q 013839 167 ERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKG-HFPFFDMAYQGFASGDL 245 (435)
Q Consensus 167 ~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~-~~vi~Deay~~~~~~~~ 245 (435)
++.++.. |+++++++++ ++++++++++|+||||.+++ +++|.++|++|| +++|+|++|..+.+..
T Consensus 133 v~~v~~~-------d~~~l~~~i~---~~t~~v~~~~p~nptG~~~~---l~~i~~la~~~g~~~livD~~~~~~~~~~- 198 (403)
T 3cog_A 133 ISFVDCS-------KIKLLEAAIT---PETKLVWIETPTNPTQKVID---IEGCAHIVHKHGDIILVVDNTFMSPYFQR- 198 (403)
T ss_dssp EEEECTT-------SHHHHHHHCC---TTEEEEEEESSCTTTCCCCC---HHHHHHHHTSSSCCEEEEECTTTCTTTCC-
T ss_pred EEEECCC-------CHHHHHHhcC---cCCeEEEEECCCCCCCeeeC---HHHHHHHHHHcCCCEEEEECCCcccccCC-
Confidence 8888751 7899999987 67899999999999999996 679999999999 9999999998765431
Q ss_pred cccHHHHHHhhhcCCeEEEEecccccccccCC-cccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCC
Q 013839 246 DKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGH-RVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSD 324 (435)
Q Consensus 246 ~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~-RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~ 324 (435)
++ + .+.++++.|+||.++.+|. |+||++ +++++ +++.++..........+.+.+.++...++.
T Consensus 199 -----~~----~-~~~div~~S~sK~~~g~~~~~~G~v~--~~~~~----l~~~l~~~~~~~g~~~~~~~~~~~~~~l~~ 262 (403)
T 3cog_A 199 -----PL----A-LGADISMYSATKYMNGHSDVVMGLVS--VNCES----LHNRLRFLQNSLGAVPSPIDCYLCNRGLKT 262 (403)
T ss_dssp -----TT----T-TTCSEEEEETTTTTTCSSCCCCEEEE--ECCHH----HHHHHHHHHHHHCCCCCHHHHHHHHHHHTT
T ss_pred -----cc----c-cCCeEEEEcChhhccCCCCCeEEEEE--ECcHH----HHHHHHHHHHhcCCCCCHHHHHHHHhhhhH
Confidence 11 1 2467999999999987764 799996 43467 777776655444455677777777777764
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC---------CC--CCcccccc----CcceeEecCC--CHHHHHHHhh
Q 013839 325 PNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLG---------SS--LNWEHITN----QLGMFCFSGL--TPYQVDRLAK 387 (435)
Q Consensus 325 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---------~~--~~~~~~~~----~~g~~~~~~~--~~~~~~~ll~ 387 (435)
.. ...++..++...+.+.+++.+ ++ .++.+..+ .++++.|. + ..+.+.++++
T Consensus 263 l~----------~r~~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~-l~~~~~~~~~~l~ 331 (403)
T 3cog_A 263 LH----------VRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFY-IKGTLQHAEIFLK 331 (403)
T ss_dssp HH----------HHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEE-ESSCHHHHHHHHH
T ss_pred HH----------HHHHHHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEEE-ecCCHHHHHHHHH
Confidence 31 222333444444455554431 00 01333333 37777774 3 3355666777
Q ss_pred hccEEEe-------------C----------------C---C--cEEeccCCCCcHHHHHHHHHHHHHhhhh
Q 013839 388 EFHIYMT-------------Q----------------D---G--RISMAGVTTGNVNYLANAIHEVTRSEQE 425 (435)
Q Consensus 388 ~~gI~i~-------------p----------------g---g--Ris~~~~~~e~i~~~~~~l~~~l~~~~~ 425 (435)
+.||.+. | | + |+|++. ++.+.+++.|.+++++..+
T Consensus 332 ~~~i~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg~---e~~~d~i~~l~~al~~~~~ 400 (403)
T 3cog_A 332 NLKLFTLAESLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVGL---EDEEDLLEDLDQALKAAHP 400 (403)
T ss_dssp HCSSSEECSCCSSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCS---SCHHHHHHHHHHHHHHHCC
T ss_pred hCCcceEccCCCCcceeeecccccccccCCHHHHHhcCCCcCeEEEEeCC---CCHHHHHHHHHHHHHHhhc
Confidence 7787432 1 1 2 999854 6677788888888775543
No 173
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*
Probab=99.93 E-value=1.7e-23 Score=204.15 Aligned_cols=287 Identities=14% Similarity=0.070 Sum_probs=181.8
Q ss_pred eeecceecCCCCCcccchHHHHHHHHhcCC-CCCCCC--CCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHH
Q 013839 54 NLGVGAYRDDKGRPVVLQCVREAEAKIAGS-EFLESI--SASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGAC 130 (435)
Q Consensus 54 ~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Y~--~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~ 130 (435)
..+++.| +.....+..+.+.++.....+. ..+.|. +.....++++.+++++ +. + +.+ ++.+|++|+
T Consensus 25 ~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~la~~~-g~------~-~~i--~~~sG~~a~ 93 (398)
T 1gc0_A 25 GGALVPP-VYQTATFTFPTVEYGAACFAGEQAGHFYSRISNPTLNLLEARMASLE-GG------E-AGL--ALASGMGAI 93 (398)
T ss_dssp TTBSSCC-BCCCSCBCCC---------------------CCHHHHHHHHHHHHHH-TC------S-EEE--EESSHHHHH
T ss_pred CCCcCCC-ccCCCccccCCHHHHHHhhcCCcCCCcccCCCChHHHHHHHHHHHHh-CC------C-cEE--EECCHHHHH
Confidence 3455665 4444445555555444322211 122233 4456778999999987 32 1 233 577888999
Q ss_pred HHHHHHHHHhCCCCEEEEcCCCChhhHHHH----hhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCC
Q 013839 131 RLFAEFQRRFHPESHIYFPDPTWSNHHNIW----RDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHN 206 (435)
Q Consensus 131 ~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~N 206 (435)
.++ +..++.+||+|+++.|+|.++...+ ...|++++.++. .|+++++++++ ++++++++++|+|
T Consensus 94 ~~~--l~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~i~---~~~~~v~~~~~~n 161 (398)
T 1gc0_A 94 TST--LWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDM-------ADLQALEAAMT---PATRVIYFESPAN 161 (398)
T ss_dssp HHH--HHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECT-------TCHHHHHHHCC---TTEEEEEEESSCT
T ss_pred HHH--HHHHhcCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECC-------CCHHHHHHhcC---CCCeEEEEECCCC
Confidence 888 6667889999999999999887765 567888877764 27899999997 6789999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcc-cEEEEE
Q 013839 207 PTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRV-GCLSIL 285 (435)
Q Consensus 207 PtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~Rv-G~~~~~ 285 (435)
|||.+.+ +++|.++|++||+++|+|++|..+.+.. ++ . .+.++++.|+||.++.+|+|+ ||+++
T Consensus 162 ptG~~~~---l~~i~~l~~~~~~~li~D~~~~~~~~~~------~~----~-~~~d~~~~S~sK~~~~~~~~~~G~l~~- 226 (398)
T 1gc0_A 162 PNMHMAD---IAGVAKIARKHGATVVVDNTYCTPYLQR------PL----E-LGADLVVHSATKYLSGHGDITAGIVVG- 226 (398)
T ss_dssp TTCCCCC---HHHHHHHHGGGTCEEEEECTTTHHHHCC------GG----G-GTCSEEEEETTTTTTCSSSCCCEEEEE-
T ss_pred CCccccc---HHHHHHHHHHcCCEEEEECCCcccccCC------ch----h-hCceEEEECCccccCCCCCCeEEEEEE-
Confidence 9999985 6799999999999999999987554321 11 1 245789999999999999998 88863
Q ss_pred ecChhHHHHHHH-HHHHHhhc-cccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-----
Q 013839 286 CVDSKQAAAIRS-QIQQIARA-MYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGS----- 358 (435)
Q Consensus 286 ~~~~~~~~~~~~-~l~~~~~~-~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----- 358 (435)
+++ .+. .++..... .....+.+.+.++...++.. ....++..++.+.+.+.|++++.
T Consensus 227 --~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----------~~~~~~~~~~~~~l~~~L~~~~~v~~v~ 290 (398)
T 1gc0_A 227 --SQA----LVDRIRLQGLKDMTGAVLSPHDAALLMRGIKTL----------NLRMDRHCANAQVLAEFLARQPQVELIH 290 (398)
T ss_dssp --CHH----HHHHHHHTHHHHHTCCCCCHHHHHHHHHHHTTH----------HHHHHHHHHHHHHHHHHHHTCTTEEEEE
T ss_pred --ChH----HHHHHHHHHhhccCCCCCCHHHHHHHHhccchH----------HHHHHHHHHHHHHHHHHHhcCCCeeEEE
Confidence 666 443 34443333 33456677777666666432 23344555566666667765431
Q ss_pred -C-----CCccccc----cCcceeEecCCC--HHHHHHHhhhccEEEeC
Q 013839 359 -S-----LNWEHIT----NQLGMFCFSGLT--PYQVDRLAKEFHIYMTQ 395 (435)
Q Consensus 359 -~-----~~~~~~~----~~~g~~~~~~~~--~~~~~~ll~~~gI~i~p 395 (435)
+ ..+.... ..++++.| .+. .+.+..++++.+|.+..
T Consensus 291 ~~~l~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~l~~~~i~~~~ 338 (398)
T 1gc0_A 291 YPGLASFPQYTLARQQMSQPGGMIAF-ELKGGIGAGRRFMNALQLFSRA 338 (398)
T ss_dssp EC----------------CCTTEEEE-EETTHHHHHHHHHHHCSSSEEC
T ss_pred CCCCCCCcCHHHHHhhCCCCceEEEE-EECCCHHHHHHHHHhCCCceec
Confidence 0 0011111 24555554 342 34566777777776643
No 174
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Probab=99.93 E-value=3.5e-24 Score=208.47 Aligned_cols=308 Identities=13% Similarity=-0.002 Sum_probs=199.2
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCC-CCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchh
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESI-SASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTG 128 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~-~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~ 128 (435)
+++++|+.|.| ..++...+.+...+..+ .|. +..+..++++++++++... +++ ++.||++
T Consensus 22 ~~~~~l~~~~p------~~~~~~~~a~~~~~~~~---~~~~~~~~~~~l~~~la~~~~~~--------~~i--~~~~gt~ 82 (391)
T 3dr4_A 22 SDLPRISVAAP------RLDGNERDYVLECMDTT---WISSVGRFIVEFEKAFADYCGVK--------HAI--ACNNGTT 82 (391)
T ss_dssp ------CCCCC------CCCSSHHHHHHHHHHHT---CCSSCSHHHHHHHHHHHHHHTCS--------EEE--EESSHHH
T ss_pred CCCceeccCCC------CCCHHHHHHHHHHHHcC---CccCCChHHHHHHHHHHHHhCCC--------cEE--EeCCHHH
Confidence 57888999886 22333434333333322 355 6788999999999998322 344 7999999
Q ss_pred HHHHHHHHHHH-hCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCC
Q 013839 129 ACRLFAEFQRR-FHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNP 207 (435)
Q Consensus 129 a~~~~~~~~~~-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NP 207 (435)
|+.++ +..+ +.+||+|+++.|+|..+...++..|++++.++. +++++.+|+++++++++ +++++++ ++||
T Consensus 83 al~~~--l~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~d~~~l~~~~~---~~~~~v~---~~n~ 153 (391)
T 3dr4_A 83 ALHLA--LVAMGIGPGDEVIVPSLTYIASANSVTYCGATPVLVDN-DPRTFNLDAAKLEALIT---PRTKAIM---PVHL 153 (391)
T ss_dssp HHHHH--HHHHTCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECB-CTTTCSBCGGGSGGGCC---TTEEEEC---CBCG
T ss_pred HHHHH--HHHcCCCCcCEEEECCCchHHHHHHHHHCCCEEEEEec-CccccCcCHHHHHHhcC---CCceEEE---EECC
Confidence 99888 6666 789999999999999999999999999999998 45678999999999887 5777776 4789
Q ss_pred CCCCCCHHHHHHHHHHHHhcCceeeeeccCCCcc-CCCCcccHHHHHHhhhcCCeEEEEeccc--ccccccCCcccEEEE
Q 013839 208 TGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFA-SGDLDKDAQAIRIFLEDEHLIGCAQSYA--KSMGLYGHRVGCLSI 284 (435)
Q Consensus 208 tG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~s~S--K~~g~~G~RvG~~~~ 284 (435)
||...+ +++|.++|++||+++|+|++|.... +.+. . ..... .+.+.||| |.++ |.+.|+++
T Consensus 154 tG~~~~---~~~i~~l~~~~~~~li~D~a~~~g~~~~~~-----~---~~~~~--di~~~S~s~~K~l~--~g~gg~~~- 217 (391)
T 3dr4_A 154 YGQICD---MDPILEVARRHNLLVIEDAAEAVGATYRGK-----K---SGSLG--DCATFSFFGNAIIT--TGEGGMIT- 217 (391)
T ss_dssp GGCCCC---HHHHHHHHHHTTCEEEEECTTCTTCEETTE-----E---TTSSS--SEEEEECBTTSSSC--CBSCEEEE-
T ss_pred CCChhh---HHHHHHHHHHcCCEEEEECcccccceECCe-----e---ecccC--CEEEEECCCCCcCC--cCCeEEEE-
Confidence 998765 6689999999999999999987533 2210 0 11111 36677766 7664 46678885
Q ss_pred EecChhHHHHHHHHHHHHhhccc--------------cCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 013839 285 LCVDSKQAAAIRSQIQQIARAMY--------------GSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLR 350 (435)
Q Consensus 285 ~~~~~~~~~~~~~~l~~~~~~~~--------------~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 350 (435)
+.+++ +.+.++....... ...+.+ .++...... +.+++..++.+++++.+.
T Consensus 218 -~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~l--~aa~~~~~~--------~~~~~~~~~~~~~~~~l~ 282 (391)
T 3dr4_A 218 -TNDDD----LAAKMRLLRGQGMDPNRRYWFPIVGFNYRMTNI--QAAIGLAQL--------ERVDEHLAARERVVGWYE 282 (391)
T ss_dssp -ESCHH----HHHHHHHHHBTTCCTTSTTCCSSCCCBCBCCHH--HHHHHHHHH--------HTHHHHHHHHHHHHHHHH
T ss_pred -ECCHH----HHHHHHHHHhcCCCCCCcccccccccccCCCHH--HHHHHHHHH--------HHHHHHHHHHHHHHHHHH
Confidence 44566 5555554432111 122222 122111111 334556677777788888
Q ss_pred HHHHhhCCCCCcccccc------Cccee-Eec------CCCHHHHHHHhhhccEEEeCCC--------------------
Q 013839 351 QNLEKLGSSLNWEHITN------QLGMF-CFS------GLTPYQVDRLAKEFHIYMTQDG-------------------- 397 (435)
Q Consensus 351 ~~l~~~~~~~~~~~~~~------~~g~~-~~~------~~~~~~~~~ll~~~gI~i~pgg-------------------- 397 (435)
+.|++++. ....+ ..+++ .++ +.+.+.+.+.|.++||.+.++.
T Consensus 283 ~~L~~~g~----~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~L~~~GI~v~~~~~p~~~~~~~~~~~~~~~~~~ 358 (391)
T 3dr4_A 283 QKLARLGN----RVTKPHVALTGRHVFWMYTVRLGEGLSTTRDQVIKDLDALGIESRPVFHPMHIMPPYAHLATDDLKIA 358 (391)
T ss_dssp HHHGGGTT----SEECCCCCTTSCCCCSSEEEEECSSCSSCHHHHHHHHHHTTCCCEECCCCGGGSGGGGGGCCTTCHHH
T ss_pred HHhhcCCc----cccCcCCCCCCcceeEEEEEEECCccchhHHHHHHHHHHCCCceeecCCccccChhhhhcCcCCChHH
Confidence 88887753 22222 12222 222 2345666555567899998761
Q ss_pred --------cEEec-cCCCCcHHHHHHHHHHHH
Q 013839 398 --------RISMA-GVTTGNVNYLANAIHEVT 420 (435)
Q Consensus 398 --------Ris~~-~~~~e~i~~~~~~l~~~l 420 (435)
|+++. ..+++++++++++|++++
T Consensus 359 ~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l 390 (391)
T 3dr4_A 359 EACGVDGLNLPTHAGLTEADIDRVIAALDQVL 390 (391)
T ss_dssp HHHHHHEEEECCCTTCCHHHHHHHHHHHHTTC
T ss_pred HHHHhCeEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 55543 347899999999987653
No 175
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.92 E-value=2.4e-23 Score=202.20 Aligned_cols=280 Identities=14% Similarity=0.076 Sum_probs=194.8
Q ss_pred CCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHH----HhhCCC
Q 013839 90 SASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNI----WRDAQI 165 (435)
Q Consensus 90 ~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~----~~~~g~ 165 (435)
+..+..++++++++++... +.+. +.+|++|+.++ +..++.+||+|+++.|+|.+.... ++..|+
T Consensus 50 ~~~~~~~l~~~la~~~~~~-------~~i~---~~sGt~a~~~~--~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~ 117 (386)
T 1cs1_A 50 GNPTRDVVQRALAELEGGA-------GAVL---TNTGMSAIHLV--TTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCY 117 (386)
T ss_dssp CCHHHHHHHHHHHHHHTCS-------EEEE---ESSHHHHHHHH--HHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSC
T ss_pred CCccHHHHHHHHHHHhCCC-------cEEE---eCCHHHHHHHH--HHHHhCCCCEEEEecCCcHhHHHHHHHHHHhcCC
Confidence 3466789999999998332 2444 56669999888 666678999999999999875443 356788
Q ss_pred CeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCC
Q 013839 166 PERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDL 245 (435)
Q Consensus 166 ~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~ 245 (435)
+++.++. .|++++++.++ ++++++++++|+||||.+++ +++|.++|++||+++|+||+|..+....
T Consensus 118 ~~~~~~~-------~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~- 183 (386)
T 1cs1_A 118 RVLFVDQ-------GDEQALRAALA---EKPKLVLVESPSNPLLRVVD---IAKICHLAREVGAVSVVDNTFLSPALQN- 183 (386)
T ss_dssp EEEEECT-------TCHHHHHHHHH---TCCSEEEEECSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCC-
T ss_pred EEEEeCC-------CCHHHHHHhhc---cCCcEEEEeCCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccCC-
Confidence 8877764 28899999998 57789999999999999986 6799999999999999999998776531
Q ss_pred cccHHHHHHhhhcCCeEEEEecccccccccCCcc-cEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCC
Q 013839 246 DKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRV-GCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSD 324 (435)
Q Consensus 246 ~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~Rv-G~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~ 324 (435)
+. . .+.++++.|+||.++.+|.|+ ||++ +++++ +++.+.........+.+.+.+.++...+..
T Consensus 184 -----~~----~-~~~di~~~s~sK~~~~~~~~~~G~~~--~~~~~----l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 247 (386)
T 1cs1_A 184 -----PL----A-LGADLVLHSCTKYLNGHSDVVAGVVI--AKDPD----VVTELAWWANNIGVTGGAFDSYLLLRGLRT 247 (386)
T ss_dssp -----GG----G-GTCSEEEEETTTTTTCSSCCCCEEEE--ESSHH----HHHHHHHHHHHHTCBCCHHHHHHHHHHHTT
T ss_pred -----cc----c-cCceEEEEcCcccccCCCCceeEEEE--eCcHH----HHHHHHHHHHhcCCCCCHHHHHHHHhcccH
Confidence 11 1 246789999999999899997 8986 43347 666666655443445677776666555542
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC------CC-----Ccccc----ccCcceeEec-CCCHHHHHHHhhh
Q 013839 325 PNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGS------SL-----NWEHI----TNQLGMFCFS-GLTPYQVDRLAKE 388 (435)
Q Consensus 325 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~------~~-----~~~~~----~~~~g~~~~~-~~~~~~~~~ll~~ 388 (435)
+....++..++++.+.+.|++++. +. .+.+. ...++++.|. .-..+.+...+++
T Consensus 248 ----------~~~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 317 (386)
T 1cs1_A 248 ----------LVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLGG 317 (386)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSCHHHHHHHHHT
T ss_pred ----------HHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECCCHHHHHHHHHh
Confidence 233344556666677777765431 10 00111 1225555443 1124566666778
Q ss_pred ccEEEeC---C-----------------------------C--cEEeccCCCCcHHHHHHHHHHHHHhhh
Q 013839 389 FHIYMTQ---D-----------------------------G--RISMAGVTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 389 ~gI~i~p---g-----------------------------g--Ris~~~~~~e~i~~~~~~l~~~l~~~~ 424 (435)
.||.+.+ | + |+|++. ++.++.+++|.+++++..
T Consensus 318 ~gi~~~~~~~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~---~~~~~~i~~l~~al~~~~ 384 (386)
T 1cs1_A 318 LSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGI---EDGEDLIADLENGFRAAN 384 (386)
T ss_dssp CSSSEEBSCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCS---SCHHHHHHHHHHHHHHHT
T ss_pred CCcceEcccCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEEcc---CCHHHHHHHHHHHHHHhh
Confidence 8998873 2 2 888754 677888888888876543
No 176
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*
Probab=99.92 E-value=2.3e-23 Score=202.50 Aligned_cols=274 Identities=14% Similarity=0.066 Sum_probs=193.2
Q ss_pred CcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHH----HhhCCCC
Q 013839 91 ASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNI----WRDAQIP 166 (435)
Q Consensus 91 ~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~----~~~~g~~ 166 (435)
.....++++.+++++. .. +.+ ++.+|++|+.++ +..++.+||+|+++.|+|.++... ++..|++
T Consensus 58 ~~~~~~l~~~la~~~g-~~-------~~i--~~~sG~~ai~~~--~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~ 125 (389)
T 3acz_A 58 NPTVEQFEEMVCSIEG-AA-------GSA--AFGSGMGAISSS--TLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGIE 125 (389)
T ss_dssp CHHHHHHHHHHHHHHT-CS-------EEE--EESSHHHHHHHH--HTTTCCTTCEEEEESSCCHHHHHHHHHHHHHTTCE
T ss_pred ChHHHHHHHHHHHHhC-CC-------eEE--EeCCHHHHHHHH--HHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCCE
Confidence 4456789999999983 21 233 578888998888 666688999999999999987665 5778988
Q ss_pred eeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCc
Q 013839 167 ERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLD 246 (435)
Q Consensus 167 ~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~ 246 (435)
++.++. .|+++++++++ ++++++++++|+||||.+.+ +++|.++|++||+++|+|++|..+....
T Consensus 126 ~~~v~~-------~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~---l~~i~~~~~~~~~~livD~~~~~~~~~~-- 190 (389)
T 3acz_A 126 VDLIDT-------SDVEKVKAAWK---PNTKMVYLESPANPTCKVSD---IKGIAVVCHERGARLVVDATFTSPCFLK-- 190 (389)
T ss_dssp EEEECT-------TCHHHHHHTCC---TTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECTTTCTTTCC--
T ss_pred EEEECC-------CCHHHHHHhcC---CCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCccccccC--
Confidence 888865 37899999887 67899999999999999986 6799999999999999999997665421
Q ss_pred ccHHHHHHhhhcCCeEEEEecccccccccCCcc-cEEEEEecCh-hHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCC
Q 013839 247 KDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRV-GCLSILCVDS-KQAAAIRSQIQQIARAMYGSPPVHGILLVATILSD 324 (435)
Q Consensus 247 ~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~Rv-G~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~ 324 (435)
++ + .+.++++.|+||.++.+|.|+ ||+++ ++ + +++.++........+.+...+.++...++.
T Consensus 191 ----~~----~-~~~di~~~S~sK~~~~~~~~~~G~v~~---~~~~----~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~ 254 (389)
T 3acz_A 191 ----PL----E-LGADIALHSVSKYINGHGDVIGGVSSA---KTAE----DIATIKFYRKDAGSLMAPMDAFLCARGMKT 254 (389)
T ss_dssp ----GG----G-TTCSEEEEETTTTTTCSSCCCCEEEEE---SSHH----HHHHHHHHHHHHCCCCCHHHHHHHHHHHTT
T ss_pred ----cc----c-cCCeEEEECChhhccCCCCceeEEEEE---CcHH----HHHHHHHHHHhcCCCCCHHHHHHHHcCccH
Confidence 11 1 246789999999999999998 99864 55 7 777776655433445566666666666653
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC------CC-----Cccccc----cCcceeEecCC-CHHHHHHHhhh
Q 013839 325 PNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGS------SL-----NWEHIT----NQLGMFCFSGL-TPYQVDRLAKE 388 (435)
Q Consensus 325 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~------~~-----~~~~~~----~~~g~~~~~~~-~~~~~~~ll~~ 388 (435)
. ....++..++.+.+.+.|++++. +. .+.... ..++++.+ .+ ..+.+.+++++
T Consensus 255 l----------~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~-~l~~~~~~~~~l~~ 323 (389)
T 3acz_A 255 L----------PIRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLF-EMKSFEAAKKLMEH 323 (389)
T ss_dssp H----------HHHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEE-EESSHHHHHHHHTT
T ss_pred H----------HHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEE-EECCHHHHHHHHHh
Confidence 2 22233444555666666665421 00 111111 12454443 23 25667777777
Q ss_pred ccEEEeC---C-----------------------------C--cEEeccCCCCcHHHHHHHHHHHHH
Q 013839 389 FHIYMTQ---D-----------------------------G--RISMAGVTTGNVNYLANAIHEVTR 421 (435)
Q Consensus 389 ~gI~i~p---g-----------------------------g--Ris~~~~~~e~i~~~~~~l~~~l~ 421 (435)
.||.+.+ | + |+|++. ++.+.+++.|.++++
T Consensus 324 ~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~---~~~~~li~~l~~al~ 387 (389)
T 3acz_A 324 LKVCTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGI---ENVDDIIADLKQALE 387 (389)
T ss_dssp CSSSEEBSCCCCSSCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECCS---SCHHHHHHHHHHHHT
T ss_pred CCCcEECcCCCCcccEeeCCcccccccCCHHHHHhcCCCcCeEEEEecc---CCHHHHHHHHHHHHh
Confidence 8877655 2 2 788744 688889999988875
No 177
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.92 E-value=8.2e-24 Score=207.48 Aligned_cols=279 Identities=14% Similarity=0.119 Sum_probs=179.4
Q ss_pred HHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHH---HHhhCCCC--eeeeeecC
Q 013839 100 ESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHN---IWRDAQIP--ERTYHYYD 174 (435)
Q Consensus 100 ~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~---~~~~~g~~--~~~v~~~~ 174 (435)
.+++++ +.. +++|. + .+|++|+.++ +.+++.+||+|++++|+|..+.. .+...|.. ++.++.
T Consensus 79 ~la~~~-g~~-----~~~i~--~-~sGt~a~~~~--~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-- 145 (417)
T 3n0l_A 79 RCKKLF-NCK-----FANVQ--P-NSGSQANQGV--YAALINPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGV-- 145 (417)
T ss_dssp HHHHHH-TCS-----EEECC--C-SSHHHHHHHH--HHHHSCTTCEEEEECC----------------CCSEEEEECC--
T ss_pred HHHHHh-CCC-----CcceE--e-ccHHHHHHHH--HHHhcCCCCEEEecccccccccchhhhhhhhcceeeeEeccC--
Confidence 555555 332 34565 4 4558999888 67778999999999999977644 33344444 444554
Q ss_pred CCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccC-CCccCCCCcccHHHHH
Q 013839 175 PDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAY-QGFASGDLDKDAQAIR 253 (435)
Q Consensus 175 ~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay-~~~~~~~~~~~~~~~~ 253 (435)
++++.+|+++|++++.+ ++++++++++|+| |...+ +++|.++|++||+++|+|+++ .++.+.+.. .
T Consensus 146 ~~~~~~d~~~l~~~i~~--~~~~~v~~~~~~~--G~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~--~---- 212 (417)
T 3n0l_A 146 ELDGRIDYEKVREIAKK--EKPKLIVCGASAY--ARVID---FAKFREIADEIGAYLFADIAHIAGLVVAGEH--P---- 212 (417)
T ss_dssp CTTSSCCHHHHHHHHHH--HCCSEEEECCSSC--CSCCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTSS--C----
T ss_pred CCCCCcCHHHHHHHHHh--cCCeEEEECCccc--CccCC---HHHHHHHHHHcCCEEEEECccchhhhhcccC--C----
Confidence 35678999999999973 2567888888886 66666 679999999999999999995 222222110 0
Q ss_pred HhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhcc-ccCCChhHHHHHHHHhCChhhHHHHH
Q 013839 254 IFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAM-YGSPPVHGILLVATILSDPNLKSLWI 332 (435)
Q Consensus 254 ~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~q~~~~~~l~~~~l~~~~~ 332 (435)
......++++.|+||.+ +|+|+||++ +++++ +++.+....... ..+++...+.++..++... +.
T Consensus 213 --~~~~~~di~~~s~sK~l--~g~~~G~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~aa~~~a~~~~-----~~ 277 (417)
T 3n0l_A 213 --SPFPYAHVVSSTTHKTL--RGPRGGIIM--TNDEE----LAKKINSAIFPGIQGGPLMHVIAAKAVGFKFN-----LS 277 (417)
T ss_dssp --CCTTTCSEEEEESSTTT--CSCSCEEEE--ESCHH----HHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHH-----TS
T ss_pred --CccccceEEEeeCcccc--CCCCeeEEE--ECCHH----HHHHHhhhhCCcccCCcHHHHHHHHHHHHHHH-----Hh
Confidence 01113468899999987 788999996 43367 777776654432 2334444444444444321 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccc-cCcceeEecC-----CCHHHHHHHhhhccEEEeCCC---------
Q 013839 333 DEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHIT-NQLGMFCFSG-----LTPYQVDRLAKEFHIYMTQDG--------- 397 (435)
Q Consensus 333 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~g~~~~~~-----~~~~~~~~ll~~~gI~i~pgg--------- 397 (435)
+..+++++++.++++.+.+.|++.+. .... +..+.++|+. ++.+.+.++++++||.+.+++
T Consensus 278 ~~~~~~~~~~~~~~~~l~~~L~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~ 353 (417)
T 3n0l_A 278 DEWKVYAKQVRTNAQVLANVLMDRKF----KLVSDGTDNHLVLMSFLDREFSGKDADLALGNAGITANKNTVPGEIRSPF 353 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTC----EEGGGSCSSSEEEEECTTSSSCHHHHHHHHHHTTEECEECCCTTCCSCTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCc----eeccCCCCceEEEEEcccCCCCHHHHHHHHHHcCeEEeccccCCCCcccC
Confidence 44577888888899999999988653 3333 2334466653 356777777788999997431
Q ss_pred -----cEEecc-----CCCCcHHHHHHHHHHHHHhh
Q 013839 398 -----RISMAG-----VTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 398 -----Ris~~~-----~~~e~i~~~~~~l~~~l~~~ 423 (435)
|+++.. .+++++++++++|++++++.
T Consensus 354 ~~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~~l~~~ 389 (417)
T 3n0l_A 354 ITSGLRLGTPALTARGFKEKEMEIVSNYIADILDDV 389 (417)
T ss_dssp TCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCeeEecCHHHhhCCCCHHHHHHHHHHHHHHHhcc
Confidence 776532 35799999999999998754
No 178
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Probab=99.92 E-value=1.9e-24 Score=214.14 Aligned_cols=338 Identities=11% Similarity=0.039 Sum_probs=211.5
Q ss_pred CCCCeeeeecceecCCCCCcccchHH-H-HHHH---HhcCCCC--CCCCCCcccHHHHHHHHHhHcCCCCccccCCCeee
Q 013839 48 PSPYKINLGVGAYRDDKGRPVVLQCV-R-EAEA---KIAGSEF--LESISASVSTKMVEESVKLVYGKDSDVVKEGRSAG 120 (435)
Q Consensus 48 ~~~~~i~l~~g~~~~~~~~~~~~~~~-~-~~~~---~~~~~~~--~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~ 120 (435)
++...+|+..|.+...-|+ .++.++ + ++.+ ++..... ..|. .....++++.+++++... .++++.
T Consensus 52 ~g~~ylD~~~~~~~~~lG~-~~p~v~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~la~~la~~~~~~-----~~~~v~- 123 (449)
T 2cjg_A 52 TGRRYLDMFTFVASSALGM-NPPALVDDREFHAELMQAALNKPSNSDVY-SVAMARFVETFARVLGDP-----ALPHLF- 123 (449)
T ss_dssp TCCEEEESSHHHHTCSSCB-SCHHHHTCHHHHHHHHHHHTCCCCTTTCC-CHHHHHHHHHHHHHHCCT-----TCCEEE-
T ss_pred CCcEEEEccCCccccCCCC-CCHHHHHHHHHHHHHHHHHhcCCCCcccC-CHHHHHHHHHHHHhcCCC-----CCCEEE-
Confidence 4567889888764222221 133343 3 4444 4443211 1132 233467777777776311 156788
Q ss_pred EecCCchhHHHHHHHHHH-HhC----------C-CCEEEEcCCCChhhHHHHhh-CC--------C-----CeeeeeecC
Q 013839 121 VQALSGTGACRLFAEFQR-RFH----------P-ESHIYFPDPTWSNHHNIWRD-AQ--------I-----PERTYHYYD 174 (435)
Q Consensus 121 ~~t~gg~~a~~~~~~~~~-~~~----------~-gd~Vlv~~p~y~~~~~~~~~-~g--------~-----~~~~v~~~~ 174 (435)
+++||++|+.++..+.. ... + ||+|++.+|+|.++...... .| . +++.+|..+
T Consensus 124 -~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 202 (449)
T 2cjg_A 124 -FVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMR 202 (449)
T ss_dssp -EESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCCCCC
T ss_pred -EeCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEcCCC
Confidence 99999999999854332 122 2 89999999999876442221 11 1 344555422
Q ss_pred --CCC------CCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCC
Q 013839 175 --PDS------KSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGV-DPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDL 245 (435)
Q Consensus 175 --~~~------~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~ 245 (435)
.+. ...++++|++.+.+..+++++|+++.++||||. ..+++++++|.++|++||+++|+||+|.+++..+.
T Consensus 203 ~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~ 282 (449)
T 2cjg_A 203 PGLDEPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGT 282 (449)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHSTTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSS
T ss_pred chhhccccchhhHHHHHHHHHHHHhcCCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccccCCCccCc
Confidence 110 024566788888643356788887777899995 88999999999999999999999999998876532
Q ss_pred cccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHH-----HHhhccccCCChhHHHHHHH
Q 013839 246 DKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQ-----QIARAMYGSPPVHGILLVAT 320 (435)
Q Consensus 246 ~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~q~~~~~ 320 (435)
.+....+ +...++ .|+||.+ |+||+++ +++ +++.+. ......+.+.+.+++.++.+
T Consensus 283 ---~~~~~~~-~~~~di---~t~sK~l-----~iG~~~~---~~~----~~~~l~~~~~~~~~~~~t~~~n~~~~~aa~a 343 (449)
T 2cjg_A 283 ---AWAYQQL-DVAPDI---VAFGKKT-----QVCGVMA---GRR----VDEVADNVFAVPSRLNSTWGGNLTDMVRARR 343 (449)
T ss_dssp ---SSTHHHH-TCCCSE---EEECGGG-----SSEEEEE---CGG----GGGSTTCTTTSTTSSCCSSSSCHHHHHHHHH
T ss_pred ---ceeeccc-CCCceE---EEecCcc-----cEEEEEE---CHH----HhhhhhhcccCCcccccCCCCCHHHHHHHHH
Confidence 1112111 222233 3789987 7999974 677 665421 11223456778888888888
Q ss_pred HhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--CCCCccccccCcceeEecCCC-----HHHHHHHhhhccEEE
Q 013839 321 ILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLG--SSLNWEHITNQLGMFCFSGLT-----PYQVDRLAKEFHIYM 393 (435)
Q Consensus 321 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~g~~~~~~~~-----~~~~~~ll~~~gI~i 393 (435)
+|+... + +...++++++++++.+.|+++. .+..+....+.+. |+++.+. .+++..++ ++||.+
T Consensus 344 al~~~~------~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~l~-~~Gv~v 413 (449)
T 2cjg_A 344 ILEVIE------A--EGLFERAVQHGKYLRARLDELAADFPAVVLDPRGRGL-MCAFSLPTTADRDELIRQLW-QRAVIV 413 (449)
T ss_dssp HHHHHH------H--HTHHHHHHHHHHHHHHHHHHHHHHSTTTSEEEEEETT-EEEEECSSHHHHHHHHHHHH-HTTEEC
T ss_pred HHHHHH------h--ccHHHHHHHHHHHHHHHHHHHHhhCCCceeeEeeccE-EEEEEECChHHHHHHHHHHH-HCCeEE
Confidence 875321 1 2455677778888888887652 2211223445555 5555552 23446665 589999
Q ss_pred eCCC----cEEecc-CCCCcHHHHHHHHHHHHHhh
Q 013839 394 TQDG----RISMAG-VTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 394 ~pgg----Ris~~~-~~~e~i~~~~~~l~~~l~~~ 423 (435)
.|+| ||+++. .+++++++++++|+++++++
T Consensus 414 ~~~g~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 448 (449)
T 2cjg_A 414 LPAGADTVRFRPPLTVSTAEIDAAIAAVRSALPVV 448 (449)
T ss_dssp EEETTTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 9875 886532 38999999999999988653
No 179
>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*
Probab=99.92 E-value=6.8e-25 Score=211.22 Aligned_cols=256 Identities=11% Similarity=0.088 Sum_probs=176.6
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhh--HHHHhhCCCCeeeeeecCCCCCC--cChHhHHHHhhcCCCCcE
Q 013839 122 QALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNH--HNIWRDAQIPERTYHYYDPDSKS--LDFAALMDDIKNAPDSSF 197 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~--~~~~~~~g~~~~~v~~~~~~~~~--~d~e~l~~~i~~~~~~~~ 197 (435)
+|+||++++.++ +.+++.|||+|+++++.+..+ ...++..| +++.++...+++++ +|.++++ ++ ++++
T Consensus 73 ~t~g~t~a~~~~--~~~l~~~gd~vl~~~~~~~~~~~~~~~~~~g-~~~~v~~~~~~~~~~~~~~~~~~--i~---~~t~ 144 (362)
T 2c0r_A 73 IQGGASTQFAMI--PMNFLKEGQTANYVMTGSWASKALKEAKLIG-DTHVAASSEASNYMTLPKLQEIQ--LQ---DNAA 144 (362)
T ss_dssp ESSHHHHHHHHH--HHHHCCTTCEEEEEECSHHHHHHHHHHHHHS-CEEEEEECGGGTTCSCCCGGGCC--CC---TTEE
T ss_pred ECCCchHHHHHH--HHhcCCCCCeEEEEecCcHhHHHHHHHHHhC-CeEEEecccccccccCCCHHHcc--cC---CCcC
Confidence 679999999988 777789999999887764443 35667789 99999873112233 4666553 44 6789
Q ss_pred EEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCC
Q 013839 198 FLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGH 277 (435)
Q Consensus 198 ~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~ 277 (435)
++++++|+||||..++ ++++| +|+++|+|++|..+... . + +.+ ..+++.|+||.+|++|
T Consensus 145 ~v~~~~~~n~tG~~~~--~l~~i------~~~~vivD~a~~~~~~~-~-----~---~~~---~d~~~~s~~K~~g~~G- 203 (362)
T 2c0r_A 145 YLHLTSNETIEGAQFK--AFPDT------GSVPLIGDMSSDILSRP-F-----D---LNQ---FGLVYAGAQKNLGPSG- 203 (362)
T ss_dssp EEEEESEETTTTEECS--SCCCC------TTSCEEEECTTTTTSSC-C-----C---GGG---CSEEEEETTTTTCCSS-
T ss_pred EEEEeCCcCccceecc--ccccc------CCCEEEEEChhhccCCc-c-----c---hhH---CcEEEEeccccccCcC-
Confidence 9999999999999754 34454 89999999998755422 1 1 111 2477889999999888
Q ss_pred cccEEEEEecChhHHHHHHHHHHHH------------hhccccCCChhHHHHHHHHhCChhhHHHHHH-HHHHHHHHHHH
Q 013839 278 RVGCLSILCVDSKQAAAIRSQIQQI------------ARAMYGSPPVHGILLVATILSDPNLKSLWID-EVKIMADRIQR 344 (435)
Q Consensus 278 RvG~~~~~~~~~~~~~~~~~~l~~~------------~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~-~~~~~~~~~~~ 344 (435)
+||+++ +++ +++.+.+. ......+++.+.|.++..+|+... .. .+++.++++++
T Consensus 204 -~G~l~~---~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~-----~~~~~~~~~~~~~~ 270 (362)
T 2c0r_A 204 -VTVVIV---RED----LVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIE-----ERGGLEGVQQANRK 270 (362)
T ss_dssp -CEEEEE---EGG----GSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHH-----HTTHHHHHHHHHHH
T ss_pred -cEEEEE---cHH----HHhhccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHH-----HhCCHHHHHHHHHH
Confidence 899974 666 44433221 112335677888888888875321 12 56888899999
Q ss_pred HHHHHHHHHHhhC-CCCCccccc---cCcceeEecCC----CHHHHHHHhhhccEEEeCC----C--cEEeccC-CCCcH
Q 013839 345 KRTTLRQNLEKLG-SSLNWEHIT---NQLGMFCFSGL----TPYQVDRLAKEFHIYMTQD----G--RISMAGV-TTGNV 409 (435)
Q Consensus 345 ~~~~l~~~l~~~~-~~~~~~~~~---~~~g~~~~~~~----~~~~~~~ll~~~gI~i~pg----g--Ris~~~~-~~e~i 409 (435)
+++++.+.|++++ . +.... ..++.++++.+ +.+.+.+.|+++||.+.+| + |+|++.. +++++
T Consensus 271 ~~~~l~~~L~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gi~~~~g~~~~~~iRis~~~~~~~e~i 347 (362)
T 2c0r_A 271 KASLIYDAIDQSGGF---YRGCVDVDSRSDMNITFRLASEELEKEFVKASEQEGFVGLKGHRSVGGLRASIYNAVPYESC 347 (362)
T ss_dssp HHHHHHHHHHTSTTS---SEESSCGGGBCSSEEEEECSCHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHH
T ss_pred HHHHHHHHHHHcCCc---cccCCChHHcCCcEEEEEcCCcchHHHHHHHHHHCCCeeccCCCCCCEEEEECCCCCCHHHH
Confidence 9999999999886 2 12211 12334455544 2334444456789988876 2 9998642 67899
Q ss_pred HHHHHHHHHHHHh
Q 013839 410 NYLANAIHEVTRS 422 (435)
Q Consensus 410 ~~~~~~l~~~l~~ 422 (435)
++++++|++++++
T Consensus 348 ~~l~~~l~~~~~~ 360 (362)
T 2c0r_A 348 EALVQFMEHFKRS 360 (362)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988754
No 180
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*
Probab=99.92 E-value=6.3e-24 Score=211.57 Aligned_cols=340 Identities=13% Similarity=0.062 Sum_probs=206.1
Q ss_pred CCCCeeeeeccee-cCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCc
Q 013839 48 PSPYKINLGVGAY-RDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSG 126 (435)
Q Consensus 48 ~~~~~i~l~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg 126 (435)
.+.+.++|..|.+ .|......++.+.+++...+..+ ...|.+..+..+|++++++++ +. +++. +|+||
T Consensus 30 ~g~~~~~~~~~~~ylD~~~~~~~~~v~~a~~~~l~~~-~~~y~~~~~~~~l~~~la~~~-~~-------~~v~--~t~~g 98 (467)
T 2oqx_A 30 SGMNPFLLDSEDVFIDLLTDSGTGAVTQSMQAAMMRG-DEAYSGSRSYYALAESVKNIF-GY-------QYTI--PTHQG 98 (467)
T ss_dssp TTSCGGGSCGGGCSEECSCCSSCSCCCHHHHHHTTSC-CCCSSSCHHHHHHHHHHHHHH-CC-------SEEE--EEC--
T ss_pred cCCCceeccCCCeeEecccCCCcHHHHHHHHHHhccC-cceeccCchhHHHHHHHHHHh-Cc-------CcEE--EcCCc
Confidence 4566788888753 22211112234444444554444 346888888999999999998 32 2566 89999
Q ss_pred hhHHHHHHHHHHHhCC-----C----CEEEEcCCCChhhHHHHhhCCCCeeee------eec--CCCCCCcChHhHHHHh
Q 013839 127 TGACRLFAEFQRRFHP-----E----SHIYFPDPTWSNHHNIWRDAQIPERTY------HYY--DPDSKSLDFAALMDDI 189 (435)
Q Consensus 127 ~~a~~~~~~~~~~~~~-----g----d~Vlv~~p~y~~~~~~~~~~g~~~~~v------~~~--~~~~~~~d~e~l~~~i 189 (435)
++|+.++ +..++.+ | |+|++..+.|..+.......|+.++.. +.. .+.++.+|+++|++++
T Consensus 99 t~A~~~a--l~~~~~~~~~~~G~~~~d~Ii~~~~h~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i 176 (467)
T 2oqx_A 99 RGAEQIY--IPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGI 176 (467)
T ss_dssp CCSHHHH--HHHHHHHHHHHHCCCTTTCEEEESSCCHHHHHHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHH
T ss_pred HHHHHHH--HHHHhccccccCCCCccceEEecccccccchhhhhccCcceeeccccccccCCCCCCccCCcCHHHHHHHH
Confidence 9999888 5555567 8 998877544455555555556554432 110 0134568999999999
Q ss_pred hcCC-CCcEEEEeCCCCCCC-CCCCCHHHHHHHHHHHHhcCceeeeeccCCC----------ccCCCCcccHHHHH-Hhh
Q 013839 190 KNAP-DSSFFLLHPSAHNPT-GVDPTEEQWREISYQFKVKGHFPFFDMAYQG----------FASGDLDKDAQAIR-IFL 256 (435)
Q Consensus 190 ~~~~-~~~~~v~~~~p~NPt-G~~~~~~~l~~i~~~~~~~~~~vi~Deay~~----------~~~~~~~~~~~~~~-~~~ 256 (435)
++.. +++++|++++|+||| |.+++.+++++|.++|++||+++|+|+++.. ..+.+. +...+. ...
T Consensus 177 ~~~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~--~~~~~~~~~~ 254 (467)
T 2oqx_A 177 EEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDW--TIEQITRETY 254 (467)
T ss_dssp HHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTS--CHHHHHHHHG
T ss_pred HhcCCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCc--cHHHHhhhhh
Confidence 7421 367899999999998 9999999999999999999999999965321 122221 122221 000
Q ss_pred hcCCeEEEEeccccccccc-CCcccEEEEEecChhHHHHHHHHHHHHhh--cc---ccCCChhHHHHHHHHhCChhhHHH
Q 013839 257 EDEHLIGCAQSYAKSMGLY-GHRVGCLSILCVDSKQAAAIRSQIQQIAR--AM---YGSPPVHGILLVATILSDPNLKSL 330 (435)
Q Consensus 257 ~~~~~~i~~~s~SK~~g~~-G~RvG~~~~~~~~~~~~~~~~~~l~~~~~--~~---~~~~~~~~q~~~~~~l~~~~l~~~ 330 (435)
...+ +++.|+||.+|++ | ||++ ++++...+ ....++.... .. ....+.....++...+.
T Consensus 255 ~~~d--~~~~s~sK~~g~~~G---g~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~------- 319 (467)
T 2oqx_A 255 KYAD--MLAMSAKKDAMVPMG---GLLC--MKDDSFFD-VYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLY------- 319 (467)
T ss_dssp GGCS--EEEEESSSTTCCSSC---EEEE--ECSGGGHH-HHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHH-------
T ss_pred ccCC--eEEEecccccCCCCc---eEEE--ecChhHHH-HHHHHHHhhhccCCcccccchhhhHHHHHHHhhH-------
Confidence 1122 4578999999866 4 6664 43340111 3333443221 10 11122221111111111
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEecCC-------C-----HHH-HHHHhhhccEEEeC-
Q 013839 331 WIDEV-KIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL-------T-----PYQ-VDRLAKEFHIYMTQ- 395 (435)
Q Consensus 331 ~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~-------~-----~~~-~~~ll~~~gI~i~p- 395 (435)
+.+ +...++..++++.+.+.|++++ +.+. +.+++++|+.+ + .+. +..+++++||.+.|
T Consensus 320 --~~~~~~~~~~~~~~~~~l~~~L~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~ 392 (467)
T 2oqx_A 320 --DGMNLDWLAYRIAQVQYLVDGLEEIG----VVCQ-QAGGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEI 392 (467)
T ss_dssp --HTTCHHHHHHHHHHHHHHHHHHHHTT----CCEE-EECSSCEEEEHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEEE
T ss_pred --hhhhHHHHHHHHHHHHHHHHHHHHCC----Ceee-cCCceEEEEechhhcccCCcccccHHHHHHHHHHhcCceeccc
Confidence 111 1233445667788888888875 3445 66777887644 2 112 45554778999976
Q ss_pred C------------------C--cEEecc--CCCCcHHHHHHHHHHHHHhhh
Q 013839 396 D------------------G--RISMAG--VTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 396 g------------------g--Ris~~~--~~~e~i~~~~~~l~~~l~~~~ 424 (435)
+ + ||+++. .+++++++++++|++++++..
T Consensus 393 ~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~~t~e~i~~~~~~l~~~l~~~~ 443 (467)
T 2oqx_A 393 GSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENAA 443 (467)
T ss_dssp SHHHHCBCTTTCSBCCCSCCEEEECCCTTTSCHHHHHHHHHHHHHHHHSGG
T ss_pred ccccccccccccccccCccCeEEEEecCCCCCHHHHHHHHHHHHHHHhhhh
Confidence 2 3 888862 478999999999999987644
No 181
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*
Probab=99.92 E-value=5.1e-23 Score=202.07 Aligned_cols=303 Identities=15% Similarity=0.098 Sum_probs=197.1
Q ss_pred cchHHHHHHHHhcCCCCCCCCCCcc----cHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHH-hCCC
Q 013839 69 VLQCVREAEAKIAGSEFLESISASV----STKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRR-FHPE 143 (435)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~Y~~~~g----~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~-~~~g 143 (435)
++...+.+.+.+..+....|++..| ..++++.+++++ +.. +.+ ++.+|++|+.++ +.++ +.+|
T Consensus 15 ~~~~~~a~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~-g~~-------~~i--~~~~gt~al~~~--~~~~~~~~g 82 (418)
T 2c81_A 15 SDRTRRKIEEVFQSNRWAISGYWTGEESMERKFAKAFADFN-GVP-------YCV--PTTSGSTALMLA--LEALGIGEG 82 (418)
T ss_dssp CHHHHHHHHHHHHHTCCSTTSBCCSSCCHHHHHHHHHHHHH-TCS-------EEE--EESCHHHHHHHH--HHHTTCCTT
T ss_pred CHHHHHHHHHHHhcCCccccCcccCCHHHHHHHHHHHHHHh-CCC-------cEE--EeCCHHHHHHHH--HHHcCCCCc
Confidence 3444444444443332223777777 566777777766 331 233 688889999888 6666 7899
Q ss_pred CEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHH
Q 013839 144 SHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQ 223 (435)
Q Consensus 144 d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~ 223 (435)
|+|+++.|+|..+...++..|++++.++. +++++.+|+++++++++ +++++|++ +||||.. .++++|.++
T Consensus 83 d~Vl~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~d~~~l~~~i~---~~~~~v~~---~~~~G~~---~~~~~i~~~ 152 (418)
T 2c81_A 83 DEVIVPSLTWIATATAVLNVNALPVFVDV-EADTYCIDPQLIKSAIT---DKTKAIIP---VHLFGSM---ANMDEINEI 152 (418)
T ss_dssp CEEEEESSSCTHHHHHHHHTTCEEEEECB-CTTTCSBCHHHHGGGCC---TTEEEECC---BCCTTCC---CCHHHHHHH
T ss_pred CEEEECCCccHhHHHHHHHcCCEEEEEec-CCCCCCcCHHHHHHhhC---CCCeEEEE---eCCcCCc---ccHHHHHHH
Confidence 99999999999999999999999999988 34468899999999987 56788876 5699976 457799999
Q ss_pred HHhcCceeeeeccCCCcc-CCCCcccHHHHHHhhhcCCeEEEEecc--cccccccCCcccEEEEEecChhHHHHHHHHHH
Q 013839 224 FKVKGHFPFFDMAYQGFA-SGDLDKDAQAIRIFLEDEHLIGCAQSY--AKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQ 300 (435)
Q Consensus 224 ~~~~~~~vi~Deay~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~s~--SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~ 300 (435)
|++||+++|+|++|..+. +++ .. +.... .+.+.|| ||.++. | |+||++ +++++ +++.++
T Consensus 153 ~~~~~~~li~D~a~~~~~~~~~--~~------~~~~~--~~~~~s~s~~K~~~~-g-~~g~~~--~~~~~----l~~~~~ 214 (418)
T 2c81_A 153 AQEHNLFVIEDCAQSHGSVWNN--QR------AGTIG--DIGAFSCQQGKVLTA-G-EGGIIV--TKNPR----LFELIQ 214 (418)
T ss_dssp HHHTTCEEEEECTTCTTCEETT--EE------TTSSS--SEEEEECCTTSSSCS-S-SCEEEE--ESCHH----HHHHHH
T ss_pred HHHCCCEEEEECcccccCccCC--Ee------ccccc--ceEEEeccCCcccCC-C-CeEEEE--ECCHH----HHHHHH
Confidence 999999999999998776 432 11 11112 2666777 999996 8 999996 43466 666665
Q ss_pred HHhhccc------------cC-----CC--------hhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013839 301 QIARAMY------------GS-----PP--------VHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEK 355 (435)
Q Consensus 301 ~~~~~~~------------~~-----~~--------~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 355 (435)
....... .. +. ...+.++. +. . .+.+++..++.+++++++.+.|++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~--~~--~-----l~~~~~~~~~~~~~~~~l~~~L~~ 285 (418)
T 2c81_A 215 QLRADSRVYCDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAIL--LD--Q-----LQELDDKNAIREKNAMFLNDALSK 285 (418)
T ss_dssp HHHBTTEEECSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHHHH--HH--H-----HTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhCccccccccccccchhhccccccccCcCCCcCHHHHHHH--HH--H-----HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5332211 00 00 01111111 10 0 122445566666777888888877
Q ss_pred hCCCCCcccc-ccCc----ceeEe-c--------CCCHHHHHHHhhhc-cEE---EeCC---------------------
Q 013839 356 LGSSLNWEHI-TNQL----GMFCF-S--------GLTPYQVDRLAKEF-HIY---MTQD--------------------- 396 (435)
Q Consensus 356 ~~~~~~~~~~-~~~~----g~~~~-~--------~~~~~~~~~ll~~~-gI~---i~pg--------------------- 396 (435)
++. +.+. .+++ .++++ + +.+.+.+.+.|.++ ||. +.++
T Consensus 286 ~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~~~~~~~~~~~~~ 362 (418)
T 2c81_A 286 IDG---IKVMKRPPQVSRQTYYGYVFRFDPVKFGGLNADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPWTKNRYLKS 362 (418)
T ss_dssp STT---EEECCCCTTEEECCCSEEEEEECGGGTTTCCHHHHHHHHHHHHTCCTTTEECCCCCGGGCTTCCGGGCTTSCHH
T ss_pred CCC---cccCCCCCCCcccccEEEEEEEccccccccCHHHHHHHHHHcCCCCcccccccccccccCchhccccccccccc
Confidence 631 4444 3444 22121 2 24555554444456 999 7542
Q ss_pred ---------------------C--cEEec-cC-CCCcHHHHHHHHHHHHHhh
Q 013839 397 ---------------------G--RISMA-GV-TTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 397 ---------------------g--Ris~~-~~-~~e~i~~~~~~l~~~l~~~ 423 (435)
+ |+++. .. +++++++++++|+++++++
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~gt~edi~~~~~~l~~~~~~~ 414 (418)
T 2c81_A 363 VRKTEAYWRGLHYPVSERASGQSIVIHHAILLAEPSHLSLLVDAVAELARKF 414 (418)
T ss_dssp HHCCHHHHHTCCCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHTT
T ss_pred ccccccccccCCChHHHHHHhCEEEecCCccCCCHHHHHHHHHHHHHHHHhh
Confidence 1 77764 34 7899999999999988654
No 182
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*
Probab=99.92 E-value=4e-23 Score=200.94 Aligned_cols=215 Identities=13% Similarity=0.079 Sum_probs=163.0
Q ss_pred CcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHH----hhCCCC
Q 013839 91 ASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIW----RDAQIP 166 (435)
Q Consensus 91 ~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~----~~~g~~ 166 (435)
.....++++.+++++... +++ +++||++|+.++ +..++.+||+|+++.|+|.++...+ +..|.+
T Consensus 65 ~~~~~~l~~~la~~~g~~--------~~~--~~~sGt~A~~~a--l~~~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~g~~ 132 (392)
T 3qhx_A 65 NPTRTALEAALAAVEDAA--------FGR--AFSSGMAAADCA--LRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGWNVE 132 (392)
T ss_dssp CHHHHHHHHHHHHHTTCS--------EEE--EESSHHHHHHHH--HHHHCCTTCEEEEETTCCHHHHHHHHHTGGGGTCE
T ss_pred ChHHHHHHHHHHHHhCCC--------cEE--EECCHHHHHHHH--HHHHhCCCCEEEEeCCCcchHHHHHHHHHHhcCcE
Confidence 345678999999987322 344 789999999888 6667889999999999998877665 667888
Q ss_pred eeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCc
Q 013839 167 ERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLD 246 (435)
Q Consensus 167 ~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~ 246 (435)
++.++. .|++++++++. ++++++++++|+||||.+.+ +++|.++|++||+++|+|++|.......
T Consensus 133 ~~~v~~-------~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~---l~~i~~la~~~g~~li~D~~~~~~~~~~-- 197 (392)
T 3qhx_A 133 YTPVAL-------ADLDAVRAAIR---PTTRLIWVETPTNPLLSIAD---IAGIAQLGADSSAKVLVDNTFASPALQQ-- 197 (392)
T ss_dssp EEEECT-------TCHHHHHHHCC---TTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECTTTCTTTCC--
T ss_pred EEEeCC-------CCHHHHHHhhC---CCCeEEEEECCCCCCcEEec---HHHHHHHHHHcCCEEEEECCCcccccCC--
Confidence 888865 18899999997 68899999999999999876 6799999999999999999987543221
Q ss_pred ccHHHHHHhhhcCCeEEEEecccccccccC-CcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCCh
Q 013839 247 KDAQAIRIFLEDEHLIGCAQSYAKSMGLYG-HRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDP 325 (435)
Q Consensus 247 ~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G-~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~ 325 (435)
+. + ...++++.|+||.++.+| .|+||++ +++++ +.+.+...........+.+.+.++...++.-
T Consensus 198 ----~~----~-~~~di~~~S~sK~lg~~g~~~~G~v~--~~~~~----~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~l 262 (392)
T 3qhx_A 198 ----PL----S-LGADVVLHSTTKYIGGHSDVVGGALV--TNDEE----LDQSFAFLQNGAGAVPGPFDAYLTMRGLKTL 262 (392)
T ss_dssp ----GG----G-GTCSEEEEETTTTTTCSSCCCCEEEE--ESCHH----HHHHHHHHHHHHCCCCCHHHHHHHHHHHTTH
T ss_pred ----hH----H-hCCcEEEEcCccccCCCCCceEEEEE--ECcHH----HHHHHHHHHHhcCCCCCHHHHHHHHhhhhHH
Confidence 11 1 135688999999999777 7899996 43467 7777776655555667777777776666542
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 013839 326 NLKSLWIDEVKIMADRIQRKRTTLRQNLEKLG 357 (435)
Q Consensus 326 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 357 (435)
....++..++++.+.+.|++.+
T Consensus 263 ----------~~~~~~~~~~~~~l~~~L~~~~ 284 (392)
T 3qhx_A 263 ----------VLRMQRHSENAAAVAEFLAEHP 284 (392)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHTCT
T ss_pred ----------HHHHHHHHHHHHHHHHHHhcCC
Confidence 2334556666777777777653
No 183
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*
Probab=99.92 E-value=1.1e-23 Score=203.15 Aligned_cols=281 Identities=15% Similarity=0.089 Sum_probs=191.6
Q ss_pred CCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHH-hCCCCEEEEcCCCChhhHHHHhhCCC
Q 013839 87 ESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRR-FHPESHIYFPDPTWSNHHNIWRDAQI 165 (435)
Q Consensus 87 ~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~-~~~gd~Vlv~~p~y~~~~~~~~~~g~ 165 (435)
.|.+..+..++++++++++... +++ +++||++|+.++ +..+ +.+||+|+++.|+|..+...++..|+
T Consensus 30 ~~~~~~~~~~l~~~la~~~~~~--------~~~--~~~sGt~al~~a--l~~~~~~~gd~Vi~~~~~~~~~~~~~~~~G~ 97 (367)
T 3nyt_A 30 QYILGPEVTELEDRLADFVGAK--------YCI--SCANGTDALQIV--QMALGVGPGDEVITPGFTYVATAETVALLGA 97 (367)
T ss_dssp CCSSCHHHHHHHHHHHHHHTCS--------EEE--EESCHHHHHHHH--HHHTTCCTTCEEEEESSSCTHHHHHHHHTTC
T ss_pred CccCChHHHHHHHHHHHHhCCC--------cEE--EeCCHHHHHHHH--HHHhCCCCcCEEEECCCccHHHHHHHHHcCC
Confidence 3556678899999999998322 444 799999999888 6666 78999999999999999999999999
Q ss_pred CeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCc-cCCC
Q 013839 166 PERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGF-ASGD 244 (435)
Q Consensus 166 ~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~-~~~~ 244 (435)
+++.++. +++++.+|+++++++++ +++++|+ |+||||... ++++|.++|++||+++|+|++|... .+.+
T Consensus 98 ~~~~~~~-~~~~~~~d~~~l~~~i~---~~~~~v~---~~~~~G~~~---~~~~i~~la~~~~~~li~D~a~~~g~~~~~ 167 (367)
T 3nyt_A 98 KPVYVDI-DPRTYNLDPQLLEAAIT---PRTKAII---PVSLYGQCA---DFDAINAIASKYGIPVIEDAAQSFGASYKG 167 (367)
T ss_dssp EEEEECB-CTTTCSBCGGGTGGGCC---TTEEEEC---CBCGGGCCC---CHHHHHHHHHHTTCCBEEECTTTTTCEETT
T ss_pred EEEEEec-CCccCCcCHHHHHHhcC---cCCcEEE---eeCCccChh---hHHHHHHHHHHcCCEEEEECccccCCeECC
Confidence 9999998 45568999999999986 6777776 689999655 4668999999999999999998643 2221
Q ss_pred CcccHHHHHHhhhcCCeEEEEecc--cccccccCCcccEEEEEecChhHHHHHHHHHHHHhhc------------cccCC
Q 013839 245 LDKDAQAIRIFLEDEHLIGCAQSY--AKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARA------------MYGSP 310 (435)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~i~~~s~--SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~------------~~~~~ 310 (435)
. . ....+ ++++.|| +|.++.+|. .|+++ +++++ +.+.++..... .....
T Consensus 168 ~-----~---~~~~~--di~~~Sf~~~K~l~~~g~-gg~~~--~~~~~----l~~~~~~~~~~g~~~~~~~~~~g~~~~~ 230 (367)
T 3nyt_A 168 K-----R---SCNLS--TVACTSFFPSAPLGCYGD-GGAIF--TNDDE----LATAIRQIARHGQDRRYHHIRVGVNSRL 230 (367)
T ss_dssp E-----E---TTSSS--SEEEEECCTTSSSCCSSC-CEEEE--ESCHH----HHHHHHHHTBTTEEETTEECSCCCBCCC
T ss_pred e-----e---ccCCC--CEEEEECCCCCcCCCcCc-eeEEE--eCCHH----HHHHHHHHHhcCCCcCceeeccCcCCCc
Confidence 0 0 11111 5778887 899986576 77875 54677 66666654321 12334
Q ss_pred ChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccC--ccee-EecCC-CHHHHHHHh
Q 013839 311 PVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQ--LGMF-CFSGL-TPYQVDRLA 386 (435)
Q Consensus 311 ~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~--~g~~-~~~~~-~~~~~~~ll 386 (435)
+.+.+.++...+. .+++..++.+++++.+.+.|++++.. +....+. .+++ ..+.. +.+.+.+.|
T Consensus 231 ~~~~aa~~~~~l~----------~~~~~~~~~~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~L 298 (367)
T 3nyt_A 231 DTLQAAILLPKLE----------IFEEEIALRQKVAAEYDLSLKQVGIG--TPFIEVNNISVYAQYTVRMDNRESVQASL 298 (367)
T ss_dssp CHHHHHHHHHHHH----------THHHHHHHHHHHHHHHHHHHHHTTCC--CCCCCTTEECCCSSEEEECSSHHHHHHHH
T ss_pred cHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhccCCee--ccCCCCCCceeeEEEEEEeCCHHHHHHHH
Confidence 4444433333332 23445566677778888888887531 1111111 1222 12222 566665566
Q ss_pred hhccEEEeCCC----------------------------cEEec-cCCCCcHHHHHHHHHH
Q 013839 387 KEFHIYMTQDG----------------------------RISMA-GVTTGNVNYLANAIHE 418 (435)
Q Consensus 387 ~~~gI~i~pgg----------------------------Ris~~-~~~~e~i~~~~~~l~~ 418 (435)
+++||.+.++. |+++. ..++++++++++.|++
T Consensus 299 ~~~GI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~~~~~~ 359 (367)
T 3nyt_A 299 KAAGVPTAVHYPIPLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALTN 359 (367)
T ss_dssp HHHTCCCBCSCSSCGGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHC
T ss_pred HHCCCceeccCCCccccChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHH
Confidence 77899886431 55543 3477888888887754
No 184
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*
Probab=99.92 E-value=5.9e-22 Score=194.74 Aligned_cols=212 Identities=16% Similarity=0.108 Sum_probs=153.2
Q ss_pred ccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHH----HhhCCCCee
Q 013839 93 VSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNI----WRDAQIPER 168 (435)
Q Consensus 93 g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~ 168 (435)
...++++.+++++.. ++.+ ++.+|++|+.++ +.+++.+||+|+++.|.|.+.... ++..|++++
T Consensus 115 ~~~~l~~~lA~l~g~-------~~~v---~~~sG~~Ai~~a--l~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~ 182 (445)
T 1qgn_A 115 TTVVLEEKISALEGA-------ESTL---LMASGMCASTVM--LLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITAT 182 (445)
T ss_dssp HHHHHHHHHHHHHTC-------SEEE---EESCHHHHHHHH--HHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEE
T ss_pred HHHHHHHHHHHHhCC-------CcEE---EeCCHHHHHHHH--HHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEE
Confidence 445899999998732 1233 466777998888 777789999999999999987664 456788888
Q ss_pred eeeecCCCCCCcChHhHHHHhhcCCCCc-EEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcc
Q 013839 169 TYHYYDPDSKSLDFAALMDDIKNAPDSS-FFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDK 247 (435)
Q Consensus 169 ~v~~~~~~~~~~d~e~l~~~i~~~~~~~-~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~ 247 (435)
.++.. |+++++++++ +++ ++|++++|+||||.+.+ +++|.++|++||+++|+|++|.......
T Consensus 183 ~v~~~-------d~~~l~~ai~---~~tv~lV~le~p~NptG~v~d---l~~I~~la~~~g~~livD~a~~~~~~~~--- 246 (445)
T 1qgn_A 183 VIDPA-------DVGALELALN---QKKVNLFFTESPTNPFLRCVD---IELVSKLCHEKGALVCIDGTFATPLNQK--- 246 (445)
T ss_dssp EECSS-------CHHHHHHHHH---HSCEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCC---
T ss_pred EeCCC-------CHHHHHHHhc---cCCCCEEEEeCCCCCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccCC---
Confidence 88651 7899999998 567 99999999999999986 5699999999999999999986543221
Q ss_pred cHHHHHHhhhcCCeEEEEecccccccccC-CcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChh
Q 013839 248 DAQAIRIFLEDEHLIGCAQSYAKSMGLYG-HRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPN 326 (435)
Q Consensus 248 ~~~~~~~~~~~~~~~i~~~s~SK~~g~~G-~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~ 326 (435)
+. + ...++++.|+||.+|..| .++||+++ +++ +++.+..........++.+..+++...++.
T Consensus 247 ---~~----~-~g~Div~~S~sK~~gg~gd~~~G~l~~---~~~----l~~~l~~~~~~~g~~~~~~~a~~~~~~l~~-- 309 (445)
T 1qgn_A 247 ---AL----A-LGADLVLHSATKFLGGHNDVLAGCISG---PLK----LVSEIRNLHHILGGALNPNAAYLIIRGMKT-- 309 (445)
T ss_dssp ---TT----T-TTCSEEEECTTTTTTCSSSCCCEEEEE---CHH----HHHHHHHHHHHHCCCCCHHHHHHHHHHGGG--
T ss_pred ---cc----c-cCCEEEEECCcccccccccceEEEEEE---CHH----HHHHHHHHHHHhCCCCCHHHHHHHHHhHHH--
Confidence 11 1 235688999999998555 37899964 777 666666544433333455544444444432
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 013839 327 LKSLWIDEVKIMADRIQRKRTTLRQNLEKLG 357 (435)
Q Consensus 327 l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 357 (435)
+....+++.++++.+.+.|++++
T Consensus 310 --------l~~r~~~~~~~a~~l~~~L~~~p 332 (445)
T 1qgn_A 310 --------LHLRVQQQNSTALRMAEILEAHP 332 (445)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHTCT
T ss_pred --------HHHHHHHHHHHHHHHHHHHhcCC
Confidence 23344556666778888888764
No 185
>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*
Probab=99.91 E-value=1.8e-23 Score=201.95 Aligned_cols=301 Identities=10% Similarity=-0.002 Sum_probs=201.5
Q ss_pred ccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHH---hCCCC
Q 013839 68 VVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRR---FHPES 144 (435)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~---~~~gd 144 (435)
.++.+++.+.+.+... .|.+.....++++++++++ +.. ++. +++||++|+.++ +.++ +.+||
T Consensus 11 ~~~~v~~a~~~~~~~~---~~~~~~~~~~l~~~la~~~-~~~-------~v~--~~~ggt~al~~~--~~~~~~~~~~gd 75 (375)
T 2fnu_A 11 LDKEDKKAVLEVLNSK---QLTQGKRSLLFEEALCEFL-GVK-------HAL--VFNSATSALLTL--YRNFSEFSADRN 75 (375)
T ss_dssp CCHHHHHHHHHHHTSS---CCSSSHHHHHHHHHHHHHH-TCS-------EEE--EESCHHHHHHHH--HHHSSCCCTTSC
T ss_pred CCHHHHHHHHHHHHcC---cccCChHHHHHHHHHHHHh-CCC-------eEE--EeCCHHHHHHHH--HHHhcccCCCCC
Confidence 3444444444444332 2445567889999999998 331 566 899999999988 6666 78999
Q ss_pred EEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHH
Q 013839 145 HIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQF 224 (435)
Q Consensus 145 ~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~ 224 (435)
+|+++.|+|..+...++..|++++.++. +++ +.+|+++|+++++ ++++++++++| ||...+ +++|.++|
T Consensus 76 ~Vl~~~~~~~~~~~~~~~~g~~~~~~~~-~~~-~~~d~~~l~~~i~---~~~~~v~~~~~---tG~~~~---l~~i~~l~ 144 (375)
T 2fnu_A 76 EIITTPISFVATANMLLESGYTPVFAGI-KND-GNIDELALEKLIN---ERTKAIVSVDY---AGKSVE---VESVQKLC 144 (375)
T ss_dssp EEEECSSSCTHHHHHHHHTTCEEEECCB-CTT-SSBCGGGSGGGCC---TTEEEEEEECG---GGCCCC---HHHHHHHH
T ss_pred EEEECCCccHhHHHHHHHCCCEEEEecc-CCC-CCCCHHHHHhhcC---cCceEEEEeCC---cCCccC---HHHHHHHH
Confidence 9999999999999999999999999988 333 4799999999887 56788777554 999876 56999999
Q ss_pred HhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEeccc--ccccccCCcccEEEEEecChhHHHHHHHHHHHH
Q 013839 225 KVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYA--KSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQI 302 (435)
Q Consensus 225 ~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~S--K~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~ 302 (435)
++||+++|+|++|........ ..+...+ .+.+.|+| |.++. | +|++++ .++++ +++.+...
T Consensus 145 ~~~~~~li~D~a~~~~~~~~~-------~~~~~~~--~i~~~s~s~~K~~~~-g--~g~~~~-~~~~~----~~~~~~~~ 207 (375)
T 2fnu_A 145 KKHSLSFLSDSSHALGSEYQN-------KKVGGFA--LASVFSFHAIKPITT-A--EGGAVV-TNDSE----LHEKMKLF 207 (375)
T ss_dssp HHHTCEEEEECTTCTTCEETT-------EETTSSS--SEEEEECCTTSSSCC-S--SCEEEE-ESCHH----HHHHHHHH
T ss_pred HHcCCEEEEECccccCCeECC-------eeccccC--CeEEEeCCCCCCccc-c--CceEEE-eCCHH----HHHHHHHH
Confidence 999999999999865432110 0111111 47788888 99974 6 788863 33477 66666654
Q ss_pred hhccc------------c----CCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccc
Q 013839 303 ARAMY------------G----SPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHIT 366 (435)
Q Consensus 303 ~~~~~------------~----~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 366 (435)
..... . ..+.+. ++..+... +.+++..++.+++++++.+.|++++. +.+..
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~a~~~~~~-------~~~~~~~~~~~~~~~~l~~~L~~~~~---~~~~~ 274 (375)
T 2fnu_A 208 RSHGMLKKDFFEGEVKSIGHNFRLNEIQ---SALGLSQL-------KKAPFLMQKREEAALTYDRIFKDNPY---FTPLH 274 (375)
T ss_dssp TBTTEEESSSSCEEESSCCCBCCCCHHH---HHHHHHHH-------TTHHHHHHHHHHHHHHHHHHHTTCSS---EEESG
T ss_pred HhcCCccccccccccccccccCCCCHHH---HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhcCCC---ccccC
Confidence 32111 1 222222 21222111 33456677788888999999988631 44433
Q ss_pred c----Ccc-eeEecC-----C-CHHHHHHHhhhccEEEeC----C-----------------------C--cEEecc-CC
Q 013839 367 N----QLG-MFCFSG-----L-TPYQVDRLAKEFHIYMTQ----D-----------------------G--RISMAG-VT 405 (435)
Q Consensus 367 ~----~~g-~~~~~~-----~-~~~~~~~ll~~~gI~i~p----g-----------------------g--Ris~~~-~~ 405 (435)
+ .++ ++.|+. . +.+.+.+.|.++||.+.. + + |+++.. .+
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t 354 (375)
T 2fnu_A 275 PLLKDKSSNHLYPILMHQKFFTCKKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLN 354 (375)
T ss_dssp GGCSSCCCCSCEEEEECGGGGGGHHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCC
T ss_pred CCCCCCcceEEEEEEeCccccchHHHHHHHHHHCCCCccccccccccchhhhcCCCccCChHHHHHHhCEEEecCCCCCC
Confidence 3 122 333432 2 444454444678999872 1 2 888753 37
Q ss_pred CCcHHHHHHHHHHHHHhhh
Q 013839 406 TGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 406 ~e~i~~~~~~l~~~l~~~~ 424 (435)
++++++++++|++++++++
T Consensus 355 ~~~i~~~~~~l~~~~~~~~ 373 (375)
T 2fnu_A 355 LESVQNIAHSVLKTFESFK 373 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 8999999999999887653
No 186
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=99.91 E-value=6.6e-24 Score=208.60 Aligned_cols=267 Identities=17% Similarity=0.144 Sum_probs=171.9
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChh---hHHHHhhCCCC--eeeeeecCCCCCCcChHhHHHHhhcCCCCc
Q 013839 122 QALSGTGACRLFAEFQRRFHPESHIYFPDPTWSN---HHNIWRDAQIP--ERTYHYYDPDSKSLDFAALMDDIKNAPDSS 196 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~---~~~~~~~~g~~--~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~ 196 (435)
++.||++|+.++ +.+++.+||+|++++|+|.. +.......|.. ++.++. +++++++|+++|++.+.+ +++
T Consensus 99 ~~~~Gs~a~~~a--l~~~~~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~d~~~l~~~i~~--~~~ 173 (425)
T 3ecd_A 99 QPHSGAQANGAV--MLALAKPGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGV-SRDTMLIDYDQVEALAQQ--HKP 173 (425)
T ss_dssp CCSSHHHHHHHH--HHHHCCTTCEEEEECC------------------CEEEEECC-CTTTSSCCHHHHHHHHHH--HCC
T ss_pred ecCchHHHHHHH--HHHccCCCCEEEEcccccccceecchhhhhcccceeeeecCC-CcccCccCHHHHHHHHhh--cCC
Confidence 488999998887 66678899999999999987 32232344553 445554 345589999999999963 356
Q ss_pred EEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccC-CCccCCCCcccHHHHHHhhhcCCeEEEEeccccccccc
Q 013839 197 FFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAY-QGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLY 275 (435)
Q Consensus 197 ~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~ 275 (435)
+++++++|+||+. .++++|.++|++||+++|+||+| .++.+.+.. ... + . ...+++.|+||.+ +
T Consensus 174 ~~v~~~~~~~~~~-----~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~--~~~---~-~--~~di~~~s~sK~l--~ 238 (425)
T 3ecd_A 174 SLIIAGFSAYPRK-----LDFARFRAIADSVGAKLMVDMAHIAGVIAAGRH--ANP---V-E--HAHVVTSTTHKTL--R 238 (425)
T ss_dssp SEEEEECSCCCSC-----CCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSS--CCG---G-G--TCSEEEEESSGGG--C
T ss_pred cEEEEccccCCCc-----CCHHHHHHHHHHcCCEEEEECcChHhhhhcccc--cCc---h-h--cCcEEEecCCccc--C
Confidence 7888888999753 35679999999999999999994 333322210 001 1 1 1248899999997 6
Q ss_pred CCcccEEEEEecChhHHHHHHHHHHHHhhccc-cCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013839 276 GHRVGCLSILCVDSKQAAAIRSQIQQIARAMY-GSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLE 354 (435)
Q Consensus 276 G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~ 354 (435)
|+|+||++ +.+++ +.+.+........ .+++...+.++..++... ..++.+.++++++++++.+.+.|+
T Consensus 239 g~~~g~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~-----~~~~~~~~~~~~~~~~~~l~~~L~ 307 (425)
T 3ecd_A 239 GPRGGFVL--TNDEE----IAKKINSAVFPGLQGGPLMHVIAGKAVAFGEA-----LTDDFKTYIDRVLANAQALGDVLK 307 (425)
T ss_dssp CCSCEEEE--ESCHH----HHHHHHHHHC-----CCCHHHHHHHHHHHHHH-----TSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEE--eCCHH----HHHHHHhhhCccccCCccHHHHHHHHHHHHHH-----HHHhHHHHHHHHHHHHHHHHHHHH
Confidence 78999996 43356 6666655433222 234444444443333211 114567788889999999999998
Q ss_pred hhCCCCCcccccc-CcceeEecCC-----CHHHHHHHhhhccEEEe----CC--------C--cEEecc-----CCCCcH
Q 013839 355 KLGSSLNWEHITN-QLGMFCFSGL-----TPYQVDRLAKEFHIYMT----QD--------G--RISMAG-----VTTGNV 409 (435)
Q Consensus 355 ~~~~~~~~~~~~~-~~g~~~~~~~-----~~~~~~~ll~~~gI~i~----pg--------g--Ris~~~-----~~~e~i 409 (435)
+.| +.+..+ .++.++|+.+ +.+.+.++++++||.+. |+ + |+++.. .+++++
T Consensus 308 ~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~~~e~i 383 (425)
T 3ecd_A 308 AGG----VDLVTGGTDNHLLLVDLRPKGLKGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEF 383 (425)
T ss_dssp HTT----CEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCCHHHH
T ss_pred hCC----CeeccCCCCceEEEEEeCCCCCCHHHHHHHHHHcCCEecccccCCCCCCCCCccceeccchhheeccCCHHHH
Confidence 876 344433 3556666643 56677777788999998 54 1 776322 247899
Q ss_pred HHHHHHHHHHHHhh
Q 013839 410 NYLANAIHEVTRSE 423 (435)
Q Consensus 410 ~~~~~~l~~~l~~~ 423 (435)
++++++|++++++.
T Consensus 384 ~~~~~~l~~~l~~~ 397 (425)
T 3ecd_A 384 REVGRLILEVFEAL 397 (425)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999998765
No 187
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=99.91 E-value=3.9e-22 Score=195.32 Aligned_cols=164 Identities=10% Similarity=0.015 Sum_probs=130.8
Q ss_pred CCCCCCC--cccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHH---
Q 013839 85 FLESISA--SVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNI--- 159 (435)
Q Consensus 85 ~~~Y~~~--~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~--- 159 (435)
.+.|... ....++++.+++++. . +++. +++||++|+.++ +..++.+||+|+++.|+|......
T Consensus 47 ~~~y~~~~~~~~~~l~~~la~~~g-~-------~~~~--~~~~gt~a~~~a--l~~l~~~gd~vi~~~~~~~~~~~~~~~ 114 (412)
T 2cb1_A 47 GYVYARQKDPTAKALEERLKALEG-A-------LEAV--VLASGQAATFAA--LLALLRPGDEVVAAKGLFGQTIGLFGQ 114 (412)
T ss_dssp SCSBTTTCCHHHHHHHHHHHHHHT-C-------SEEE--EESSHHHHHHHH--HHTTCCTTCEEEEETTCCHHHHHHHHH
T ss_pred CcCcCCCCChHHHHHHHHHHHHhC-C-------CcEE--EECCHHHHHHHH--HHHHhCCCCEEEEeCCCchhHHHHHHH
Confidence 4456643 567899999999983 2 1455 899999999988 666788999999999999876554
Q ss_pred -HhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCC
Q 013839 160 -WRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQ 238 (435)
Q Consensus 160 -~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~ 238 (435)
++..|++++.++. |+++|+++++ +++++|++++|+||||.+.+ +++|.++|++||+++|+|++|.
T Consensus 115 ~~~~~g~~~~~~~~--------~~~~l~~~i~---~~~~~v~~~~~~n~~G~~~~---l~~i~~l~~~~~~~li~D~~~~ 180 (412)
T 2cb1_A 115 VLSLMGVTVRYVDP--------EPEAVREALS---AKTRAVFVETVANPALLVPD---LEALATLAEEAGVALVVDNTFG 180 (412)
T ss_dssp TTTTTTCEEEEECS--------SHHHHHHHCC---TTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECGGG
T ss_pred HHHHcCCEEEEECC--------CHHHHHHHhc---cCCeEEEEeCCCCCCccccc---HHHHHHHHHHcCCEEEEECCCc
Confidence 3457888877754 3889999987 67899999999999999985 7799999999999999999997
Q ss_pred CccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEE
Q 013839 239 GFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSI 284 (435)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~ 284 (435)
.+.+.. . +. + .+.++++.|+||.++.+|.|+|++++
T Consensus 181 ~~~~~~---~--~~----~-~~~di~~~S~~K~~~~~~~~~G~~~~ 216 (412)
T 2cb1_A 181 AAGALC---R--PL----A-WGAHVVVESLTKWASGHGSVLGGAVL 216 (412)
T ss_dssp TTTTSC---C--GG----G-GTCSEEEEETTTTTTCSSCCCCEEEE
T ss_pred cccccC---C--cc----c-cCCeEEEECCcccccCCCCcEEEEEE
Confidence 763221 1 11 1 24689999999999889999999974
No 188
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*
Probab=99.91 E-value=1.6e-23 Score=208.51 Aligned_cols=292 Identities=15% Similarity=0.070 Sum_probs=197.6
Q ss_pred cHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCC---EEEEcCCCChhhHH----HHhhCCCC
Q 013839 94 STKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPES---HIYFPDPTWSNHHN----IWRDAQIP 166 (435)
Q Consensus 94 ~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd---~Vlv~~p~y~~~~~----~~~~~g~~ 166 (435)
..++++.+++++ +.. +++|+ +++|+++++.++ +.+++.+|| +|+++.|+|+.... .++..|++
T Consensus 113 ~~~l~~~la~~~-g~~-----~~~v~--~t~g~t~al~~~--~~~~~~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~ 182 (465)
T 3e9k_A 113 DESIVGLMKDIV-GAN-----EKEIA--LMNALTVNLHLL--MLSFFKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLN 182 (465)
T ss_dssp THHHHGGGHHHH-TCC-----GGGEE--ECSCHHHHHHHH--HHHHCCCCSSSCEEEEETTCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHc-CCC-----cCCEE--EECCHHHHHHHH--HHHhccccCCCCEEEEcCCcCCchHHHHHHHHHHcCCc
Confidence 356888899887 332 56888 999999999988 666666665 59999999987443 56678988
Q ss_pred eee----e-eecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCcc
Q 013839 167 ERT----Y-HYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFA 241 (435)
Q Consensus 167 ~~~----v-~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~ 241 (435)
+.. + +. ++++.+|+++|+++++++.++++++++++||||||.+++. ++|.++|++||+++|+|+++....
T Consensus 183 ~~~~~v~~~~~--~~~~~~d~~~l~~~i~~~~~~~~lv~~~~~~n~tG~~~~l---~~i~~la~~~g~~vi~D~a~~~g~ 257 (465)
T 3e9k_A 183 IEESMRMIKPR--EGEETLRIEDILEVIEKEGDSIAVILFSGVHFYTGQHFNI---PAITKAGQAKGCYVGFDLAHAVGN 257 (465)
T ss_dssp HHHHEEEECCC--TTCSSCCHHHHHHHHHHHGGGEEEEEEESBCTTTCBBCCH---HHHHHHHHHTTCEEEEECTTTTTT
T ss_pred ceeeeEEEecC--CCCCccCHHHHHHHHHhcCCCeEEEEEeCcccCcceeecH---HHHHHHHHHcCCEEEEEhhhhcCC
Confidence 643 2 32 3457889999999997432478999999999999999874 689999999999999999965432
Q ss_pred CCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHh------------------
Q 013839 242 SGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIA------------------ 303 (435)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~------------------ 303 (435)
.. . .+.. .+.++++.|++|.+.....++|++.+ +++ +++.+....
T Consensus 258 ~~-~-----~~~~----~~~D~~~~s~~K~l~~gp~~~g~l~~---~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~ 320 (465)
T 3e9k_A 258 VE-L-----YLHD----WGVDFACWCSYKYLNAGAGGIAGAFI---HEK----HAHTIKPALVGWFGHELSTRFKMDNKL 320 (465)
T ss_dssp SC-C-----CHHH----HTCCEEEECSSSTTCCCTTCCCEEEE---CGG----GTTTSCCSSCCGGGBCHHHHTTCCSCC
T ss_pred cC-C-----chhh----cCCCEEEECcccccccCCCceEEEEE---cHH----HHhhcCCcccCccCCCCCcccccCCCc
Confidence 21 1 1111 13468889999999322236899864 666 433322110
Q ss_pred -------hccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-------CCccccccC-
Q 013839 304 -------RAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSS-------LNWEHITNQ- 368 (435)
Q Consensus 304 -------~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-------~~~~~~~~~- 368 (435)
+....+++.+...++.+++..-. ...+++.++++.++++++.+.|+++..+ .++.+..+.
T Consensus 321 ~~~~~~~~~~~gt~~~~~~~a~~aal~~~~-----~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~ 395 (465)
T 3e9k_A 321 QLIPGVCGFRISNPPILLVCSLHASLEIFK-----QATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSH 395 (465)
T ss_dssp CBCSSGGGGCCSCCCHHHHHHHHHHHHHHH-----HHCHHHHHHHHHHHHHHHHHHHHHHCC---------CEEECSCSS
T ss_pred CcCCChHHhccCCccHHHHHHHHHHHHHHH-----HcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCC
Confidence 00112455555555555554221 1236788899999999999999874100 124555544
Q ss_pred ---cceeEecCC--CHH-HHHHHhhhccEEEeCC--C--cEEe--ccCCCCcHHHHHHHHHHHHHhh
Q 013839 369 ---LGMFCFSGL--TPY-QVDRLAKEFHIYMTQD--G--RISM--AGVTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 369 ---~g~~~~~~~--~~~-~~~~ll~~~gI~i~pg--g--Ris~--~~~~~e~i~~~~~~l~~~l~~~ 423 (435)
.|.++++.+ +.+ ..+.| .++||.+... + |+++ ...++++++++++.|++++++.
T Consensus 396 ~~~~g~~~~~~~~~~~~~l~~~L-~~~Gi~v~~~~~~~iRis~~~~~~t~edi~~~~~~l~~~l~~~ 461 (465)
T 3e9k_A 396 VEERGCQLTITFSVPNKDVFQEL-EKRGVVCDKRNPNGIRVAPVPLYNSFHDVYKFTNLLTSILDSA 461 (465)
T ss_dssp GGGBCSCEEEEECCTTCCHHHHH-HTTTEECEEETTTEEEEBCCTTTCCHHHHHHHHHHHHHHHTC-
T ss_pred HhhcccEEEEEecCCHHHHHHHH-HHCCEEEecCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHHhc
Confidence 244555433 333 44555 5679998754 2 9987 3347899999999999988653
No 189
>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*
Probab=99.91 E-value=9.2e-24 Score=210.88 Aligned_cols=330 Identities=15% Similarity=0.166 Sum_probs=203.8
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCC------CCCCcccHHHHHHHHHhH---cCCCCccccC--CCe
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLE------SISASVSTKMVEESVKLV---YGKDSDVVKE--GRS 118 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------Y~~~~g~~~lr~~ia~~l---~~~~~~~~~~--~~v 118 (435)
.+.|+|..|+. +.++.+++.+...+.+....+ |....+.+++++.+.+++ ++.... + .+|
T Consensus 44 ~~~i~L~a~e~------~~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~---~~~~~V 114 (483)
T 1rv3_A 44 RVGLELIASEN------FASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQ---CWGVNV 114 (483)
T ss_dssp HSSEECCTTCC------CCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTT---TEEEEC
T ss_pred hcCeEEEcCCC------CCCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcc---cCceEE
Confidence 46899987772 233333333333333321112 333344556664444443 243211 1 125
Q ss_pred eeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHH--------HhhCC--CCeeeeeecCCCCCCcChHhHHHH
Q 013839 119 AGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNI--------WRDAQ--IPERTYHYYDPDSKSLDFAALMDD 188 (435)
Q Consensus 119 ~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~--------~~~~g--~~~~~v~~~~~~~~~~d~e~l~~~ 188 (435)
. ++ +|++++.++ +.++++|||+|++++|.|.++... +...| .+++++++ +++++.+|+++|+++
T Consensus 115 ~--~~-sGs~an~~~--~~all~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~-~~~~~~iD~d~le~~ 188 (483)
T 1rv3_A 115 Q--PY-SGSPANFAV--YTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKV-NPDTGYIDYDRLEEN 188 (483)
T ss_dssp C--CS-SHHHHHHHH--HHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECB-CTTTCSBCHHHHHHH
T ss_pred E--EC-CcHHHHHHH--HHHhcCCCCEEEEecCccCcCcchhhhhcccCcccccceEEEEECcc-ccCCCcCCHHHHHHH
Confidence 5 44 444777776 677789999999999988776432 22233 33444444 345688999999999
Q ss_pred hhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCC-CccCCCCcccHHHHHHhhhcCCeEEEEec
Q 013839 189 IKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQ-GFASGDLDKDAQAIRIFLEDEHLIGCAQS 267 (435)
Q Consensus 189 i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~s 267 (435)
+.+ +++++|++ +++||+ ...+ +++|.++|++||+++|+|++|. ++.+.+.. ..++ . ...+++.|
T Consensus 189 i~~--~~tklIi~-~~sn~~-~~~d---l~~i~~ia~~~g~~livD~ah~~g~~~~~~~--~~p~----~--~~div~~s 253 (483)
T 1rv3_A 189 ARL--FHPKLIIA-GTSCYS-RNLD---YGRLRKIADENGAYLMADMAHISGLVVAGVV--PSPF----E--HCHVVTTT 253 (483)
T ss_dssp HHH--HCCSEEEE-CCSSCC-SCCC---HHHHHHHHHHTTCEEEEECTTTHHHHHHTSS--CCGG----G--TCSEEEEE
T ss_pred Hhh--cCCcEEEE-eCCcCC-CcCC---HHHHHHHHHHcCCEEEEEccchhcccccCCC--CCCC----C--CCcEEEec
Confidence 973 35678888 889998 6665 6799999999999999999964 33222111 0111 1 23588999
Q ss_pred ccccccccCCcccEEEEEecChhH-HH---------HHHHHHHHHhhc-cccCCChhHHHHHHHHhCChhhHHHHHHHHH
Q 013839 268 YAKSMGLYGHRVGCLSILCVDSKQ-AA---------AIRSQIQQIARA-MYGSPPVHGILLVATILSDPNLKSLWIDEVK 336 (435)
Q Consensus 268 ~SK~~g~~G~RvG~~~~~~~~~~~-~~---------~~~~~l~~~~~~-~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~ 336 (435)
+||++ .|+|.||+++ +++.. +. .+...+...... ...+++.....++..++.... ....+
T Consensus 254 ~~K~l--~GprgG~i~~--~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~~-----~~~~~ 324 (483)
T 1rv3_A 254 THKTL--RGCRAGMIFY--RRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAM-----TPEFK 324 (483)
T ss_dssp SSGGG--CCCSCEEEEE--ECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHT-----SHHHH
T ss_pred CcccC--CCCCceEEEE--cchhhhhccccCcchhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHHHHh-----ChhHH
Confidence 99987 6889999974 23200 00 033334332222 123444444445444553211 13456
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCccccccC-cceeEec-----CCCHHHHHHHhhhccEEEe----CC-------C--
Q 013839 337 IMADRIQRKRTTLRQNLEKLGSSLNWEHITNQ-LGMFCFS-----GLTPYQVDRLAKEFHIYMT----QD-------G-- 397 (435)
Q Consensus 337 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~g~~~~~-----~~~~~~~~~ll~~~gI~i~----pg-------g-- 397 (435)
++.+++.++++++.+.|.++| +.+..+. ...+.|+ +++.+.+.++|++.||.+. || +
T Consensus 325 ~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~L~~~gI~v~~~~~pg~~~~~~~~~i 400 (483)
T 1rv3_A 325 EYQRQVVANCRALSAALVELG----YKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGL 400 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT----CEEGGGSCSSSEEEEEGGGGTCCHHHHHHHHHHTTEECEEECCSSCSCTTSCCEE
T ss_pred HHHHHHHHHHHHHHHHHHhcC----CEeccCCCCCceEEEeccCCCCCHHHHHHHHHhCCcEEecCCCCCCCcCCCCceE
Confidence 788889999999999999886 3444443 3345565 3466677777788999998 65 1
Q ss_pred cEEeccC-C----CCcHHHHHHHHHHHHHh
Q 013839 398 RISMAGV-T----TGNVNYLANAIHEVTRS 422 (435)
Q Consensus 398 Ris~~~~-~----~e~i~~~~~~l~~~l~~ 422 (435)
||+++.. + ++++++++++|+++++.
T Consensus 401 Ris~~~~~t~g~~~edi~~~~~~l~~~l~~ 430 (483)
T 1rv3_A 401 RLGTPALTSRGLLEKDFQKVAHFIHRGIEL 430 (483)
T ss_dssp EEECHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred EeecCCcccCCCCHHHHHHHHHHHHHHHHh
Confidence 9998532 3 79999999999998865
No 190
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}
Probab=99.91 E-value=8.8e-24 Score=209.26 Aligned_cols=266 Identities=16% Similarity=0.140 Sum_probs=181.3
Q ss_pred cCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHH---HHhh--CCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcE
Q 013839 123 ALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHN---IWRD--AQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSF 197 (435)
Q Consensus 123 t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~---~~~~--~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~ 197 (435)
+.+|++|+..+ +.+++.+||+|++++|+|..+.. .+.. .+..++++++ +++++.+|++++++++.+ .+++
T Consensus 113 ~~sGs~a~~~a--~~~~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~d~~~l~~~i~~--~~~~ 187 (447)
T 3h7f_A 113 PHSGAQANAAV--LHALMSPGERLLGLDLANGGHLTHGMRLNFSGKLYENGFYGV-DPATHLIDMDAVRATALE--FRPK 187 (447)
T ss_dssp CSSHHHHHHHH--HHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHSSEEEEECC-CTTTCSCCHHHHHHHHHH--HCCS
T ss_pred eCCHHHHHHHH--HHHhcCCCCEEEecCcccccccchhhhhhhcCCeeEEEEcCc-CcccCCcCHHHHHHHHHh--cCCe
Confidence 78889998877 77778999999999999876311 1112 2334555555 345678999999999863 3467
Q ss_pred EEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccC-CCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccC
Q 013839 198 FLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAY-QGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYG 276 (435)
Q Consensus 198 ~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G 276 (435)
++++++|+||++. ++++|.++|++||+++|+|++| .++.+.+.... . + ....+++.|+||.+ +|
T Consensus 188 ~i~~~~~~~~~~~-----~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~--~---~---~~~di~~~s~sK~l--~G 252 (447)
T 3h7f_A 188 VIIAGWSAYPRVL-----DFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPS--P---V---PHADVVSTTVHKTL--GG 252 (447)
T ss_dssp EEEEECSSCCSCC-----CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCC--S---T---TTCSEEEEESSGGG--CC
T ss_pred EEEEcCCCCCCcc-----CHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCC--C---C---CCCcEEEecCCcCC--CC
Confidence 8888899999976 6789999999999999999996 33332221000 0 1 12247799999987 48
Q ss_pred CcccEEEEEecChhHHHHHHHHHHHHhhcc-ccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013839 277 HRVGCLSILCVDSKQAAAIRSQIQQIARAM-YGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEK 355 (435)
Q Consensus 277 ~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 355 (435)
+|.||+++ +++ +++.+.+..... ..+++...+.++..++.... .+..+..++++.++++.+.+.|++
T Consensus 253 ~~gG~i~~---~~~----~~~~l~~~~~~~~~~~~~~~~~~a~~~a~~~~~-----~~~~~~~~~~~~~~~~~l~~~L~~ 320 (447)
T 3h7f_A 253 GRSGLIVG---KQQ----YAKAINSAVFPGQQGGPLMHVIAGKAVALKIAA-----TPEFADRQRRTLSGARIIADRLMA 320 (447)
T ss_dssp CSCEEEEE---CGG----GHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTT-----SHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred CCeEEEEE---CHH----HHHHHhhhcCCcccCCccHHHHHHHHHHHHHhh-----CHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999964 777 777676654433 23344433444444443211 134567788888899999999887
Q ss_pred h-----CCCCCccccc-cCcceeEecC-----CCHHHHHHHhhhccEEEe----CC---------C-cEEecc-----CC
Q 013839 356 L-----GSSLNWEHIT-NQLGMFCFSG-----LTPYQVDRLAKEFHIYMT----QD---------G-RISMAG-----VT 405 (435)
Q Consensus 356 ~-----~~~~~~~~~~-~~~g~~~~~~-----~~~~~~~~ll~~~gI~i~----pg---------g-Ris~~~-----~~ 405 (435)
. |+ .... +..+.++|+. ++.+.+..+++++||.+. |+ + ||+... .+
T Consensus 321 ~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~lRig~~~~~~~~~~ 396 (447)
T 3h7f_A 321 PDVAKAGV----SVVSGGTDVHLVLVDLRDSPLDGQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPALATRGFG 396 (447)
T ss_dssp HHHHHTTC----EEGGGSCSSSEEEEECTTSSCCHHHHHHHHHHTTEECBC-------------CEEEEECHHHHHHTCC
T ss_pred ccccCCCe----EEecCCCCCCEEEEEcCCCCCCHHHHHHHHHHCCeEEecccCCCCCCCCCCCCceeccCHHHhhCCCC
Confidence 6 63 3332 3345566653 366778778888899998 44 1 887532 46
Q ss_pred CCcHHHHHHHHHHHHHhhh
Q 013839 406 TGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 406 ~e~i~~~~~~l~~~l~~~~ 424 (435)
+++++++++.|.+++++..
T Consensus 397 ~eei~~~~~~l~~~l~~~~ 415 (447)
T 3h7f_A 397 DTEFTEVADIIATALATGS 415 (447)
T ss_dssp HHHHHHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHHHHHHHhccC
Confidence 8999999999999987543
No 191
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Probab=99.91 E-value=3.5e-23 Score=205.29 Aligned_cols=315 Identities=13% Similarity=0.083 Sum_probs=205.2
Q ss_pred hHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhH---cCCCCccccCCC-----eeeEecCCchhHHHHHHHHHHHhC-
Q 013839 71 QCVREAEAKIAGSEFLESISASVSTKMVEESVKLV---YGKDSDVVKEGR-----SAGVQALSGTGACRLFAEFQRRFH- 141 (435)
Q Consensus 71 ~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l---~~~~~~~~~~~~-----v~~~~t~gg~~a~~~~~~~~~~~~- 141 (435)
+.+.+++....+....+|....+..++++++.+++ ++.. .++ +. +++||++|+.++ +.++..
T Consensus 56 ~~v~e~~~~a~~~~~~~~~~~~~~~~l~~~~~~~la~l~g~~-----~~~~~~~~~~--~t~ggtea~~~a--l~a~~~~ 126 (452)
T 2dgk_A 56 ENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAP-----APKNGQAVGT--NTIGSSEACMLG--GMAMKWR 126 (452)
T ss_dssp HHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCC-----CCTTSCCEEE--EESSHHHHHHHH--HHHHHHH
T ss_pred HHHHHHHHHHhccCCCChhhChhHHHHHHHHHHHHHHHhCCC-----cccccCCceE--EeCCHHHHHHHH--HHHHHHH
Confidence 34454554333222344666677777777776665 2332 222 55 899999998887 444332
Q ss_pred -------CC-----CEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCC
Q 013839 142 -------PE-----SHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTG 209 (435)
Q Consensus 142 -------~g-----d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG 209 (435)
+| ++|++++ +|..+...++..|++++.+++. ++++.+|+++|+++++ +++++|++++|+||||
T Consensus 127 ~~~~~~~~G~~~~~~~vi~~~-~h~~~~~~~~~~G~~v~~v~~~-~~~~~~d~~~l~~~i~---~~t~~v~~~~~~n~tG 201 (452)
T 2dgk_A 127 WRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMR-PGQLFMDPKRMIEACD---ENTIGVVPTFGVTYTG 201 (452)
T ss_dssp HHHHHHHTTCCCSCCEEEESS-CCHHHHHHHHHTTCEEEECCCB-TTBCSCCHHHHHHHCC---TTEEEEECBBSCTTTC
T ss_pred HHHHHHhcCCCCCCcEEEECC-CcHHHHHHHHHcCceEEEEecC-CCCCeECHHHHHHHHh---hCCEEEEEEcCCcCCc
Confidence 55 5999999 9999999999999999999983 3468999999999997 5789999999999999
Q ss_pred CCCCHHHHHHHHHHHHhc------CceeeeeccCCCccC---CCCcccHHHHHHhhhcCCeEEEEecccccccccCCccc
Q 013839 210 VDPTEEQWREISYQFKVK------GHFPFFDMAYQGFAS---GDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVG 280 (435)
Q Consensus 210 ~~~~~~~l~~i~~~~~~~------~~~vi~Deay~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG 280 (435)
.+.+ +++|.++|++| ++++++|++|..+.. .+ . .........-++++.|.+| +++.|+++|
T Consensus 202 ~~~~---l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~---~---~~~~~~~~~~d~~~~~~hK-~~~~~~~~G 271 (452)
T 2dgk_A 202 NYEF---PQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAP---D---IVWDFRLPRVKSISASGHK-FGLAPLGCG 271 (452)
T ss_dssp BBCC---HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCT---T---CCCSTTSTTEEEEEEETTT-TTCCCSSCE
T ss_pred ccCC---HHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCc---c---chhhcCCCCCcEEEECccc-ccCCCCCeE
Confidence 9865 56888999995 999999999987642 11 0 0000012234567788899 556889999
Q ss_pred EEEEEecChhHHHHHH-HHHHHHhhcc---------ccCC---ChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHH
Q 013839 281 CLSILCVDSKQAAAIR-SQIQQIARAM---------YGSP---PVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRT 347 (435)
Q Consensus 281 ~~~~~~~~~~~~~~~~-~~l~~~~~~~---------~~~~---~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 347 (435)
|++ +.+++ +. +.+.....+. ..+. ..+.++++...+. .+.+++..+++.++++
T Consensus 272 ~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg--------~~g~~~~~~~~~~~a~ 337 (452)
T 2dgk_A 272 WVI--WRDEE----ALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLG--------REGYTKVQNASYQVAA 337 (452)
T ss_dssp EEE--ESSGG----GSCGGGCEEECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH
T ss_pred EEE--EcCHH----HHHHHhccCccccCCCCCCcccCCCChhHHHHHHHHHHHHHh--------HHHHHHHHHHHHHHHH
Confidence 996 33443 21 2221100010 0011 2233444433332 1456778888999999
Q ss_pred HHHHHHHhhCCCCCccccc-----cCcceeEec--C-----CCHHHHHHHhhhccEEEe----CC---C----cEEeccC
Q 013839 348 TLRQNLEKLGSSLNWEHIT-----NQLGMFCFS--G-----LTPYQVDRLAKEFHIYMT----QD---G----RISMAGV 404 (435)
Q Consensus 348 ~l~~~l~~~~~~~~~~~~~-----~~~g~~~~~--~-----~~~~~~~~ll~~~gI~i~----pg---g----Ris~~~~ 404 (435)
++.+.|++++. +.+.. +..+++.|- + ++.+.+.+.|.+.||.+. |+ + |++++..
T Consensus 338 ~l~~~L~~~~~---~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~~~~~~~~~~lRis~~~~ 414 (452)
T 2dgk_A 338 YLADEIAKLGP---YEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRG 414 (452)
T ss_dssp HHHHHHHTTSS---EEEEEECCTTTBSSEEEEEECTTCCCSCCHHHHHHHHHHTTCBCCEEECSTTCTTCEEEEEECCTT
T ss_pred HHHHHHHhCCC---eEEecCCCCCCCeEEEEEEecCcccccCCHHHHHHHHHhcCCeeeeeeCCcccCCeEEEEEEecCC
Confidence 99999998752 44443 234444432 2 233444334456798543 32 2 9998643
Q ss_pred -CCCcHHHHHHHHHHHHHhhhhh
Q 013839 405 -TTGNVNYLANAIHEVTRSEQET 426 (435)
Q Consensus 405 -~~e~i~~~~~~l~~~l~~~~~~ 426 (435)
+.++++++++.|+++++.+...
T Consensus 415 ~t~e~id~li~~l~~~~~~~~~~ 437 (452)
T 2dgk_A 415 FEMDFAELLLEDYKASLKYLSDH 437 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHHHhC
Confidence 6789999999999988766543
No 192
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=99.91 E-value=1.7e-23 Score=202.33 Aligned_cols=282 Identities=11% Similarity=0.020 Sum_probs=188.0
Q ss_pred CCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHH-hCCCCEEEEcCCCChhhHHHHhhCCCC
Q 013839 88 SISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRR-FHPESHIYFPDPTWSNHHNIWRDAQIP 166 (435)
Q Consensus 88 Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~-~~~gd~Vlv~~p~y~~~~~~~~~~g~~ 166 (435)
|.+..+..++++.+++++... +++ +++||++|+.++ +.++ +.+||+|+++.|+|..+...++..|++
T Consensus 32 ~~~~~~~~~l~~~la~~~~~~--------~~i--~~~sgt~al~~~--l~~l~~~~gd~Vi~~~~~~~~~~~~~~~~g~~ 99 (373)
T 3frk_A 32 FILGDEDKKFEQEFADYCNVN--------YCI--GCGNGLDALHLI--LKGYDIGFGDEVIVPSNTFIATALAVSYTGAK 99 (373)
T ss_dssp CSSSHHHHHHHHHHHHHHTSS--------EEE--EESCHHHHHHHH--HHHTTCCTTCEEEEETTSCTHHHHHHHHHSCE
T ss_pred ccCCchHHHHHHHHHHHhCCC--------eEE--EeCCHHHHHHHH--HHHcCCCCcCEEEECCCCcHHHHHHHHHcCCE
Confidence 667788999999999998321 445 799999999888 6666 789999999999999999999999999
Q ss_pred eeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCc
Q 013839 167 ERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLD 246 (435)
Q Consensus 167 ~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~ 246 (435)
++.++. +++++.+|+++++++++ +++++++ |+||||...+ +++|.++|++||+++|+|++|......+.
T Consensus 100 ~~~~~~-~~~~~~~d~~~l~~~l~---~~~~~v~---~~n~~G~~~~---l~~i~~l~~~~~~~li~D~a~~~g~~~~~- 168 (373)
T 3frk_A 100 PIFVEP-DIRTYNIDPSLIESAIT---EKTKAII---AVHLYGQPAD---MDEIKRIAKKYNLKLIEDAAQAHGSLYKG- 168 (373)
T ss_dssp EEEECE-ETTTTEECGGGTGGGCC---TTEEEEE---EECCTTCCCC---HHHHHHHHHHHTCEEEEECTTCTTCEETT-
T ss_pred EEEEec-cccccCcCHHHHHHhcC---CCCeEEE---EECCCcCccc---HHHHHHHHHHcCCEEEEECCcccCCEECC-
Confidence 999998 45678999999999987 5777777 6899998765 56899999999999999999865332111
Q ss_pred ccHHHHHHhhhcCCeEEEEeccc--ccccccCCcccEEEEEecChhHHHHHHHHHHHHhhcc------------ccCCCh
Q 013839 247 KDAQAIRIFLEDEHLIGCAQSYA--KSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAM------------YGSPPV 312 (435)
Q Consensus 247 ~~~~~~~~~~~~~~~~i~~~s~S--K~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~------------~~~~~~ 312 (435)
. ..... ..+.+.||| |.++.+|. .|+++ +.+++ +.+.++...... ....+.
T Consensus 169 -~-----~~~~~--~d~~~~S~~~~K~l~~~g~-gg~~~--~~~~~----~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~ 233 (373)
T 3frk_A 169 -M-----KVGSL--GDAAGFSFYPAKNLGSLGD-GGAVV--TNDKD----LAEKIKALSNYGSEKKYHHIYKGFNSRLDE 233 (373)
T ss_dssp -E-----ETTSS--SSEEEEECCTTSSSCCSSS-CEEEE--ESCHH----HHHHHHHHHBTTCSBTTBCCSCCCBCCCCH
T ss_pred -E-----ecccc--ccEEEEeCcCCCccCccce-eEEEE--eCCHH----HHHHHHHHHhcCcccCCccccccccCCCCH
Confidence 0 01111 247778877 88874354 67775 44566 555555443211 111222
Q ss_pred hHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccc-ccCc---ceeEe--cCCCHHHHHHHh
Q 013839 313 HGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHI-TNQL---GMFCF--SGLTPYQVDRLA 386 (435)
Q Consensus 313 ~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~---g~~~~--~~~~~~~~~~ll 386 (435)
+...+....+ +.+++..++.+++.+.+.+.|++++ +... .+.+ +++.+ ...+.+.+.+.|
T Consensus 234 ~~aa~~~~~~----------~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L 299 (373)
T 3frk_A 234 LQAGFLRVKL----------KYLDKWNEERRKIAQKYIAGINNPN----VIIPVEADYAKHVWYTFVIRSEKRDELQKYL 299 (373)
T ss_dssp HHHHHHHHHH----------HTHHHHHHHHHHHHHHHHHHCCCTT----EECCCCCTTEECCCSSEEEEESSHHHHHHHH
T ss_pred HHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhccCc----eEeccCCCCCceeeEEEEEEeCCHHHHHHHH
Confidence 2222211111 2344556666677777777776654 1221 1111 11111 122566665556
Q ss_pred hhccEEEeCC-----------------------------C--cEEec-cCCCCcHHHHHHHHHHHHH
Q 013839 387 KEFHIYMTQD-----------------------------G--RISMA-GVTTGNVNYLANAIHEVTR 421 (435)
Q Consensus 387 ~~~gI~i~pg-----------------------------g--Ris~~-~~~~e~i~~~~~~l~~~l~ 421 (435)
+++||.+.++ + |+++. ..+++|++++++.|++...
T Consensus 300 ~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~~~~~l~~~~~ 366 (373)
T 3frk_A 300 NNNGIGTLIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDKINAWKL 366 (373)
T ss_dssp HHTTBCCBCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTCC-
T ss_pred HHCCCCcccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHhh
Confidence 7789998732 1 66654 3478899999998877654
No 193
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...
Probab=99.91 E-value=3.7e-24 Score=209.08 Aligned_cols=281 Identities=15% Similarity=0.154 Sum_probs=187.7
Q ss_pred HHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHH-H--HhhCC--CCeeeeee
Q 013839 98 VEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHN-I--WRDAQ--IPERTYHY 172 (435)
Q Consensus 98 r~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~-~--~~~~g--~~~~~v~~ 172 (435)
|+.+++++ +.. ++.+ ++.+|++|+.++ +..++.+||+|++++|+|+.+.. . +...| .+++.+++
T Consensus 75 r~~la~~~-g~~-----~~~i---~~~sGt~a~~~a--~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 143 (405)
T 2vi8_A 75 RERAKQLF-GAE-----HANV---QPHSGAQANMAV--YFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGV 143 (405)
T ss_dssp HHHHHHHH-TCS-----EEEC---CCSSHHHHHHHH--HHHHCCTTCEEEEECGGGTCCTTTTCTTSHHHHHSEEEEECB
T ss_pred HHHHHHHh-CCC-----ceEE---EecCcHHHHHHH--HHHhcCCCCEEEEecccccchhcccchhhhccceeEEEeccc
Confidence 35788877 332 2233 345669999888 66668899999999999977643 1 12223 36666665
Q ss_pred cCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccC-CCCcccHHH
Q 013839 173 YDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFAS-GDLDKDAQA 251 (435)
Q Consensus 173 ~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~-~~~~~~~~~ 251 (435)
+++++.+|++++++++.+. +++++++ +|+|+ |... ++++|.++|++||+++|+||+|..... .+. ....
T Consensus 144 -~~~~~~~d~~~l~~~i~~~--~~~~v~~-~~~~~-~~~~---~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~--~~~~ 213 (405)
T 2vi8_A 144 -DPETHVIDYDDVREKARLH--RPKLIVA-AAAAY-PRII---DFAKFREIADEVGAYLMVDMAHIAGLVAAGL--HPNP 213 (405)
T ss_dssp -CTTTCSBCHHHHHHHHHHH--CCSEEEE-CCSSC-CSCC---CHHHHHHHHHHHTCEEEEECTTTHHHHHTTS--SCCS
T ss_pred -ccccCCcCHHHHHHHHHhc--CCeEEEE-eCCCC-CccC---CHHHHHHHHHHcCCEEEEEccccccccccCc--CCCc
Confidence 3356789999999999731 4567766 44453 3333 378999999999999999999873221 111 0000
Q ss_pred HHHhhhcCCeEEEEeccccccc-ccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCC-ChhHHHHHHHHhCChhhHH
Q 013839 252 IRIFLEDEHLIGCAQSYAKSMG-LYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSP-PVHGILLVATILSDPNLKS 329 (435)
Q Consensus 252 ~~~~~~~~~~~i~~~s~SK~~g-~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~q~~~~~~l~~~~l~~ 329 (435)
+ . ...++++|+||.++ ++| ||+++ +++ +++.+.........+. +.....++..++....
T Consensus 214 ---~-~--~~di~~~s~sK~~~g~~g---G~~~~---~~~----~~~~l~~~~~~~~~~~~~~~~~aa~~~al~~~~--- 274 (405)
T 2vi8_A 214 ---V-P--YAHFVTTTTHKTLRGPRG---GMILC---QEQ----FAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEAL--- 274 (405)
T ss_dssp ---T-T--TCSEEEEESSSTTCCCSC---EEEEE---CHH----HHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHH---
T ss_pred ---c-c--cCCEEEEeccccCCCCCC---eEEEE---cHH----HHHHHHhhhcccccCCCCHHHHHHHHHHHHHHH---
Confidence 1 1 23488999999997 555 99964 777 7777766543333333 3333334344554211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccc-CcceeEecCC-----CHHHHHHHhhhccEEEeCC-------
Q 013839 330 LWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITN-QLGMFCFSGL-----TPYQVDRLAKEFHIYMTQD------- 396 (435)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~g~~~~~~~-----~~~~~~~ll~~~gI~i~pg------- 396 (435)
..++++.+++++++++++.+.|+++| +.+..+ ..++++|+.+ +.+.+.+.|.++||.+.+|
T Consensus 275 --~~~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~~~ 348 (405)
T 2vi8_A 275 --QDDFKAYAKRVVDNAKRLASALQNEG----FTLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPE 348 (405)
T ss_dssp --SHHHHHHHHHHHHHHHHHHHHHHHTT----CEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHHTEECEEECCTTCSS
T ss_pred --hhhHHHHHHHHHHHHHHHHHHHHhCC----CeEecCCCCceEEEEEccCCCCCHHHHHHHHHHcCceeccCcCccccC
Confidence 14567888899999999999998875 345444 3567777744 4555655567789999863
Q ss_pred -----C--cEEecc-----CCCCcHHHHHHHHHHHHHhhh
Q 013839 397 -----G--RISMAG-----VTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 397 -----g--Ris~~~-----~~~e~i~~~~~~l~~~l~~~~ 424 (435)
+ |++++. .+++++++++++|++++++..
T Consensus 349 ~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~~~ 388 (405)
T 2vi8_A 349 SPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKNVG 388 (405)
T ss_dssp CTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTCTT
T ss_pred CCCCCCceEEeeeeeeecCCCHHHHHHHHHHHHHHHhccc
Confidence 1 999863 478999999999999987654
No 194
>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.91 E-value=1.6e-22 Score=196.66 Aligned_cols=212 Identities=13% Similarity=0.074 Sum_probs=154.1
Q ss_pred CcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHH----HHhhCCCC
Q 013839 91 ASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHN----IWRDAQIP 166 (435)
Q Consensus 91 ~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~----~~~~~g~~ 166 (435)
..+..++|+.+++++... +.+ ++.+|++|+.++ +. ++.+||+|+++.|.|.+... .++..|++
T Consensus 54 ~~~~~~lr~~la~~~g~~--------~~i--~~~sGt~a~~~a--l~-~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~G~~ 120 (393)
T 1n8p_A 54 NPNRENLERAVAALENAQ--------YGL--AFSSGSATTATI--LQ-SLPQGSHAVSIGDVYGGTHRYFTKVANAHGVE 120 (393)
T ss_dssp CHHHHHHHHHHHHHTTCS--------EEE--EESCHHHHHHHH--HH-TSCSSCEEEEESSCCHHHHHHHHHTSTTTCSC
T ss_pred ChhHHHHHHHHHHHhCCC--------cEE--EECChHHHHHHH--HH-HcCCCCEEEEeCCCchHHHHHHHHHHHHcCcE
Confidence 356789999999998322 233 577779999888 66 78899999999999985544 34567888
Q ss_pred eeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhc----CceeeeeccCCCccC
Q 013839 167 ERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVK----GHFPFFDMAYQGFAS 242 (435)
Q Consensus 167 ~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~----~~~vi~Deay~~~~~ 242 (435)
++.++.. | ++++++++ +++++|++++|+||||.+++ +++|.++|++| |+++|+|++|..+.+
T Consensus 121 v~~v~~~-------d-~~l~~~i~---~~t~lv~~~~~~nptG~~~~---l~~i~~la~~~~~~~~~~livD~a~~~~~~ 186 (393)
T 1n8p_A 121 TSFTNDL-------L-NDLPQLIK---ENTKLVWIETPTNPTLKVTD---IQKVADLIKKHAAGQDVILVVDNTFLSPYI 186 (393)
T ss_dssp CEEESSH-------H-HHHHHHSC---SSEEEEEECSSCTTTCCCCC---HHHHHHHHHHHTTTTTCEEEEECTTTHHHH
T ss_pred EEEeCCC-------h-HHHHHhcc---cCceEEEEECCCCCcceecC---HHHHHHHHHHhCCCCCCEEEEeCCcccccc
Confidence 8888752 6 88988887 67899999999999999986 66999999999 999999999876654
Q ss_pred CCCcccHHHHHHhhhcCCeEEEEecccccccccCCcc-cEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHH
Q 013839 243 GDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRV-GCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATI 321 (435)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~Rv-G~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~ 321 (435)
.. . ... +.++++.|+||.+|.+|+|+ ||++ +++++ +++.+..........++...+.++...
T Consensus 187 ~~----~------~~~-~~di~~~S~sK~~g~~G~rigG~~~--~~~~~----~~~~l~~~~~~~g~~~~~~~~~~~~~~ 249 (393)
T 1n8p_A 187 SN----P------LNF-GADIVVHSATKYINGHSDVVLGVLA--TNNKP----LYERLQFLQNAIGAIPSPFDAWLTHRG 249 (393)
T ss_dssp CC----G------GGG-TCSEEEEETTTTTTCSSCCCCEEEE--ESCHH----HHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_pred CC----H------HHc-CCeEEEEECcccccCCCCceeEEEE--eCCHH----HHHHHHHHHHhcCCCCCHHHHHHHHhc
Confidence 21 1 111 46799999999999999999 8885 43467 666666554433334555555555445
Q ss_pred hCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013839 322 LSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKL 356 (435)
Q Consensus 322 l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 356 (435)
+.. +....++..++++.+.+.|++.
T Consensus 250 l~~----------~~~~~~~~~~~~~~l~~~L~~~ 274 (393)
T 1n8p_A 250 LKT----------LHLRVRQAALSANKIAEFLAAD 274 (393)
T ss_dssp HTT----------HHHHHHHHHHHHHHHHHHHTSC
T ss_pred cch----------HHHHHHHHHHHHHHHHHHHHhC
Confidence 543 2233444555666666677654
No 195
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=99.90 E-value=5.2e-23 Score=200.43 Aligned_cols=284 Identities=10% Similarity=-0.049 Sum_probs=188.6
Q ss_pred CCCCcc--cHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHH-hCCCCEEEEcCCCChhhHHHHhhCC
Q 013839 88 SISASV--STKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRR-FHPESHIYFPDPTWSNHHNIWRDAQ 164 (435)
Q Consensus 88 Y~~~~g--~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~-~~~gd~Vlv~~p~y~~~~~~~~~~g 164 (435)
|.+..| ..++++++++++. . ++++ +++||++|+.++ +.++ +.+||+|+++.|+|..+...++..|
T Consensus 26 ~~~~~g~~~~~l~~~la~~~~-~-------~~v~--~~~ggt~al~~~--~~~l~~~~gd~Vl~~~~~~~~~~~~~~~~g 93 (394)
T 1o69_A 26 YIAPLGEFVNRFEQSVKDYSK-S-------ENAL--ALNSATAALHLA--LRVAGVKQDDIVLASSFTFIASVAPICYLK 93 (394)
T ss_dssp TTSCTTHHHHHHHHHHHHHHC-C-------SEEE--EESCHHHHHHHH--HHHTTCCTTCEEEEESSSCGGGTHHHHHTT
T ss_pred CccCCChHHHHHHHHHHHHhC-C-------CcEE--EeCCHHHHHHHH--HHHcCCCCCCEEEECCCccHHHHHHHHHcC
Confidence 666567 8999999999983 2 2566 899999999988 6666 7899999999999999999999999
Q ss_pred CCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCC-CccCC
Q 013839 165 IPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQ-GFASG 243 (435)
Q Consensus 165 ~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~-~~~~~ 243 (435)
++++.++. + +++.+|++++++++++.+.++++++++ ||||.. .++++|.++|+++|+++|+|++|. ++.+.
T Consensus 94 ~~~~~v~~-~-~~~~~d~~~l~~~i~~~~~~~~~v~~~---~~~G~~---~~l~~i~~l~~~~~~~li~Dea~~~g~~~~ 165 (394)
T 1o69_A 94 AKPVFIDC-D-ETYNIDVDLLKLAIKECEKKPKALILT---HLYGNA---AKMDEIVEICKENDIVLIEDAAEALGSFYK 165 (394)
T ss_dssp CEEEEECB-C-TTSSBCHHHHHHHHHHCSSCCCEEEEE---CGGGCC---CCHHHHHHHHHHTTCEEEEECTTCTTCEET
T ss_pred CEEEEEEe-C-CCCCcCHHHHHHHHhcccCCceEEEEE---CCCCCh---hhHHHHHHHHHHcCCEEEEECcCcccceeC
Confidence 99999988 3 567899999999997432257777775 489954 567799999999999999999997 55543
Q ss_pred CCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccC--------------
Q 013839 244 DLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGS-------------- 309 (435)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-------------- 309 (435)
+. .. ....+-++...|.+|.+ +|.|+||++ +++++ +++.++........+
T Consensus 166 ~~--~~------~~~~~~~~~s~s~~K~l--~~~~~G~~~--~~~~~----l~~~l~~~~~~~~~~~~~~~~~~~g~~~~ 229 (394)
T 1o69_A 166 NK--AL------GTFGEFGVYSYNGNKII--TTSGGGMLI--GKNKE----KIEKARFYSTQARENCLHYEHLDYGYNYR 229 (394)
T ss_dssp TE--ET------TSSSSEEEEECCTTSSS--CCSSCEEEE--ESCHH----HHHHHHHHTBTCCCSSSSCCCSSCCCBCB
T ss_pred Cc--cc------ccccCcEEEEEeCCccC--CCCCceEEE--ECCHH----HHHHHHHHHHhccccCccccccccCcccC
Confidence 21 10 11122233333445655 567999996 43467 777776643322111
Q ss_pred CChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccc----Ccce-eEec--C------
Q 013839 310 PPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITN----QLGM-FCFS--G------ 376 (435)
Q Consensus 310 ~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~----~~g~-~~~~--~------ 376 (435)
.+.+...++...+ +.+++..++++++++++.+.|+++ . .+.++ ..++ ..++ .
T Consensus 230 ~~~~~aa~~l~~l----------~~l~~~~~~~~~~~~~l~~~L~~~-~----~~~~~~~~~~~~~~~~~i~~~~~~~~~ 294 (394)
T 1o69_A 230 LSNVLGAIGVAQM----------EVLEQRVLKKREIYEWYKEFLGEY-F----SFLDELENSRSNRWLSTALINFDKNEL 294 (394)
T ss_dssp CCHHHHHHHHHHH----------TTHHHHHHHHHHHHHHHHHHHTTT-E----ECCCCCTTEECCCSSEEEEESCCGGGS
T ss_pred cCHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhccc-c----cccCCCCCCcceeEEEEEEecchhhcc
Confidence 1112211111112 224456677888888888888764 2 12222 1232 1222 2
Q ss_pred -----------------CCHHHHHHHhhhccEEEeCCC-----------------------------cEEeccCCCCcHH
Q 013839 377 -----------------LTPYQVDRLAKEFHIYMTQDG-----------------------------RISMAGVTTGNVN 410 (435)
Q Consensus 377 -----------------~~~~~~~~ll~~~gI~i~pgg-----------------------------Ris~~~~~~e~i~ 410 (435)
.+.+.+.+.|.++||.++++. |.+....+++|++
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~edi~ 374 (394)
T 1o69_A 295 NACQKDINISQKNITLHPKISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVY 374 (394)
T ss_dssp CCCCEEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHH
T ss_pred ccccccccccccccccccCHHHHHHHHHHcCCcccccCCccccchhhhccCCCCChHHHHHhcCeEEccCCCCCCHHHHH
Confidence 134455555567899998761 1111124789999
Q ss_pred HHHHHHHHHHHh
Q 013839 411 YLANAIHEVTRS 422 (435)
Q Consensus 411 ~~~~~l~~~l~~ 422 (435)
+++++|+++++.
T Consensus 375 ~~~~~l~~~~~~ 386 (394)
T 1o69_A 375 EISKLILKSIKA 386 (394)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHhc
Confidence 999999987654
No 196
>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*
Probab=99.90 E-value=2.5e-23 Score=202.99 Aligned_cols=274 Identities=12% Similarity=0.032 Sum_probs=181.9
Q ss_pred cHHHHHHHHHhHcCCCCccccCCCeeeEe-cCCchhHHHHHHHHHHHhCCCCEEEEcCCCChh-hHHHHhhC--CCCeee
Q 013839 94 STKMVEESVKLVYGKDSDVVKEGRSAGVQ-ALSGTGACRLFAEFQRRFHPESHIYFPDPTWSN-HHNIWRDA--QIPERT 169 (435)
Q Consensus 94 ~~~lr~~ia~~l~~~~~~~~~~~~v~~~~-t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~-~~~~~~~~--g~~~~~ 169 (435)
..++++.+++++ +.. . +++++ + ++||++|+.++ +.+++.+| .+.+..+.|.. ....+... |++++.
T Consensus 80 ~~~~~~~la~~~-g~~-~---~~~i~--~~t~g~t~al~~~--~~~l~~~g-v~~v~~~~~~~~~~~~~~~~~~g~~~~~ 149 (398)
T 2fyf_A 80 VGRVRSGLAELF-SLP-D---GYEVI--LGNGGATAFWDAA--AFGLIDKR-SLHLTYGEFSAKFASAVSKNPFVGEPII 149 (398)
T ss_dssp HHHHHHHHHHHT-TCC-T---TCEEE--EEETCHHHHHHHH--HHHTCSSC-EEEEECSHHHHHHHHHHHHCTTSCCCEE
T ss_pred HHHHHHHHHHHh-CCC-C---CceEE--EeCCchhHHHHHH--HHHhcCCC-eEEEeCCHHHHHHHHHHHHhCCCCceEE
Confidence 567888888887 332 1 34777 7 99999999998 67677787 22233333321 12234555 788888
Q ss_pred eeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccH
Q 013839 170 YHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDA 249 (435)
Q Consensus 170 v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~ 249 (435)
++.. +++..+. .+. +++++|++++|+||||.+++.+++.++ +|+++|+|++|..+... . +
T Consensus 150 v~~~--~g~~~~~-----~i~---~~~~~v~~~~~~nptG~~~~~~~i~~~------~~~~vivD~a~~~~~~~-~--~- 209 (398)
T 2fyf_A 150 ITSD--PGSAPEP-----QTD---PSVDVIAWAHNETSTGVAVAVRRPEGS------DDALVVIDATSGAGGLP-V--D- 209 (398)
T ss_dssp EECC--TTCCCCC-----CCC---TTCSEEEEESEETTTTEECCCCCCTTC------C-CEEEEECTTTTTTSC-C--C-
T ss_pred EecC--CCCCCCc-----ccc---CCCCEEEEeCcCCCcceecchHHhhhh------cCCeEEEEeccccCCcc-c--C-
Confidence 8872 3333332 133 567899999999999999998866554 89999999998765432 1 1
Q ss_pred HHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHh---------------------hcccc
Q 013839 250 QAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIA---------------------RAMYG 308 (435)
Q Consensus 250 ~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~---------------------~~~~~ 308 (435)
+ . +.++++.|+||.+|++| ++||+++ +++ +++.+++.. .....
T Consensus 210 --~----~--~~di~~~s~sK~~~~~g-g~g~l~~---~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (398)
T 2fyf_A 210 --I----A--ETDAYYFAPQKNFASDG-GLWLAIM---SPA----ALSRIEAIAATGRWVPDFLSLPIAVENSLKNQTYN 273 (398)
T ss_dssp --G----G--GCSEEEECTTSTTCSCS-SEEEEEE---CHH----HHHHHHHHHHTTCCCCGGGCHHHHHHHHTTTCCSS
T ss_pred --c----c--cCcEEEEecCcccCCCC-ceEEEEE---CHH----HHHHhhcccccCCCCCcEEehHHHhhhcccCCCCC
Confidence 1 1 23578999999999775 5899864 777 555553210 12234
Q ss_pred CCChhHHHHHHHHhCChhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhCCCCCccccc--c--CcceeEecC----CC
Q 013839 309 SPPVHGILLVATILSDPNLKSLWIDE--VKIMADRIQRKRTTLRQNLEKLGSSLNWEHIT--N--QLGMFCFSG----LT 378 (435)
Q Consensus 309 ~~~~~~q~~~~~~l~~~~l~~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~--~--~~g~~~~~~----~~ 378 (435)
+++...+.++..++... .+. +++.+++++++++.+.+.|++++ ++.+.. + .+++++|+. .+
T Consensus 274 t~~~~~~~a~~~al~~~------~~~g~~~~~~~~~~~~~~~l~~~L~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (398)
T 2fyf_A 274 TPAIATLALLAEQIDWL------VGNGGLDWAVKRTADSSQRLYSWAQERP---YTTPFVTDPGLRSQVVGTIDFVDDVD 344 (398)
T ss_dssp CCCHHHHHHHHHHHHHH------HHHTSHHHHHHHHHHHHHHHHHHHHHST---TEEESCCSGGGBCSSEEEEEECTTSC
T ss_pred CCCHHHHHHHHHHHHHH------HHccCHHHHHHHHHHHHHHHHHHHHHcC---CceeccCChhhcCCcEEEEECCCCCC
Confidence 56666666666666431 122 67888899999999999999873 144442 3 345466664 35
Q ss_pred HHHHHHHhhhccEEEeCC------C--cEEecc-CCCCcHHHHHHHHHHHHHh
Q 013839 379 PYQVDRLAKEFHIYMTQD------G--RISMAG-VTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 379 ~~~~~~ll~~~gI~i~pg------g--Ris~~~-~~~e~i~~~~~~l~~~l~~ 422 (435)
.+.+.+.|.++||.+.+| + ||+++. .+++++++++++|++++++
T Consensus 345 ~~~l~~~L~~~gI~v~~g~~~~~~~~iRis~~~~~t~e~i~~~~~~l~~~l~~ 397 (398)
T 2fyf_A 345 AGTVAKILRANGIVDTEPYRKLGRNQLRVAMFPAVEPDDVSALTECVDWVVER 397 (398)
T ss_dssp HHHHHHHHHHTTCBCCSCCTTTCSSEEEEECCTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCcEEecCcccCCCCEEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 555533445579999874 2 999863 3789999999999988754
No 197
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=99.90 E-value=4.9e-23 Score=202.09 Aligned_cols=265 Identities=15% Similarity=0.169 Sum_probs=173.2
Q ss_pred cCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhH---HHHhhCC--CCeeeeeecCCCCCCcChHhHHHHhhcCCCCcE
Q 013839 123 ALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHH---NIWRDAQ--IPERTYHYYDPDSKSLDFAALMDDIKNAPDSSF 197 (435)
Q Consensus 123 t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~---~~~~~~g--~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~ 197 (435)
+.+|++|+.++ +.+++.+||+|+++.|+|..+. ..+...| ...+.++. ++++.+|+++|++++.+ .+++
T Consensus 98 ~~sGs~a~~~a--~~~~~~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~d~~~l~~~i~~--~~~~ 171 (420)
T 3gbx_A 98 PHSGSQANFAV--YTALLQPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGI--DESGKIDYDEMAKLAKE--HKPK 171 (420)
T ss_dssp CSSHHHHHHHH--HHHHCCTTCEEEEEEEC------------CHHHHSEEEEEEE--CTTCSCCHHHHHHHHHH--HCCS
T ss_pred ecCcHHHHHHH--HHHhcCCCCEEEecchhhcceeccchhhhhcccceeEEeccC--CccCCcCHHHHHHHHHh--cCCe
Confidence 45668888887 6777899999999999997743 2222223 34445555 35578999999999973 2478
Q ss_pred EEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCC-ccCCCCcccHHHHHHhhhcCCeEEEEecccccccccC
Q 013839 198 FLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQG-FASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYG 276 (435)
Q Consensus 198 ~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G 276 (435)
++++++|+||+ .. ++++|.++|++||+++|+||+|.. +...+.. .......+++++|+||.++ |
T Consensus 172 ~v~~~~~~~~~--~~---~l~~l~~l~~~~~~~li~De~~~~~~~~~~~~--------~~~~~~~di~~~s~sK~~~--g 236 (420)
T 3gbx_A 172 MIIGGFSAYSG--VV---DWAKMREIADSIGAYLFVDMAHVAGLIAAGVY--------PNPVPHAHVVTTTTHKTLA--G 236 (420)
T ss_dssp EEEECCTTCCS--CC---CHHHHHHHHHHTTCEEEEECTTTHHHHHTTSS--------CCSTTTSSEEEEESSGGGC--S
T ss_pred EEEEecCccCC--cc---CHHHHHHHHHHcCCEEEEECCcchhceecccC--------CcccccCCEEEeecccCCC--C
Confidence 88998999985 33 377999999999999999999642 2211100 0011124588999999985 5
Q ss_pred CcccEEEEEecCh---hHHHHHHHHHHHHhhcc-ccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013839 277 HRVGCLSILCVDS---KQAAAIRSQIQQIARAM-YGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQN 352 (435)
Q Consensus 277 ~RvG~~~~~~~~~---~~~~~~~~~l~~~~~~~-~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 352 (435)
.+.||+++ ++ + +.+.+....... ..+++...+.++..++... ..++.++.++++.++++.+.+.
T Consensus 237 ~~gg~~~~---~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~-----~~~~~~~~~~~~~~~~~~l~~~ 304 (420)
T 3gbx_A 237 PRGGLILA---KGGDEE----LYKKLNSAVFPSAQGGPLMHVIAGKAVALKEA-----MEPEFKVYQQQVAKNAKAMVEV 304 (420)
T ss_dssp CSCEEEEE---SSCCHH----HHHHHHHHHC----CCCCHHHHHHHHHHHHHT-----TSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEE---cCCcHH----HHHHhhhhcCCCCCCCcchhHHHHHHHHHHHH-----HhHhHHHHHHHHHHHHHHHHHH
Confidence 66699864 55 5 666665543322 2344444444444333211 1145677888899999999999
Q ss_pred HHhhCCCCCcccccc-CcceeEecC-----CCHHHHHHHhhhccEEEeC-------C---C----cEEecc-----CCCC
Q 013839 353 LEKLGSSLNWEHITN-QLGMFCFSG-----LTPYQVDRLAKEFHIYMTQ-------D---G----RISMAG-----VTTG 407 (435)
Q Consensus 353 l~~~~~~~~~~~~~~-~~g~~~~~~-----~~~~~~~~ll~~~gI~i~p-------g---g----Ris~~~-----~~~e 407 (435)
|++.+ +.+..+ ..+.++|+. .+.+.+.++++++||.+.+ + + ||++.. .+++
T Consensus 305 L~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRi~~~~~~~~~~~~~ 380 (420)
T 3gbx_A 305 FLNRG----YKVVSGGTENHLFLLDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRIGSPAVTRRGFKEA 380 (420)
T ss_dssp HHHTT----CEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHH
T ss_pred HHhcC----CeeccCCCCCeEEEEEcCCCCCCHHHHHHHHHHCCcEeccccCCCCccccCCCcceEEecchhcccCCCHH
Confidence 98876 344432 445566653 3566777777889999987 2 1 888753 2468
Q ss_pred cHHHHHHHHHHHHHhhh
Q 013839 408 NVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 408 ~i~~~~~~l~~~l~~~~ 424 (435)
+++++++.|++++++..
T Consensus 381 ~i~~~~~~l~~~l~~~~ 397 (420)
T 3gbx_A 381 EVKELAGWMCDVLDNIN 397 (420)
T ss_dssp HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhCcc
Confidence 89999999999886543
No 198
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=99.90 E-value=4.3e-22 Score=192.51 Aligned_cols=308 Identities=13% Similarity=0.009 Sum_probs=192.9
Q ss_pred cccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHH-HHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHH-hCCCC
Q 013839 67 PVVLQCVREAEAKIAGSEFLESISASVSTKMVEES-VKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRR-FHPES 144 (435)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~i-a~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~-~~~gd 144 (435)
+.+++.++.+.+.+..+....|. ....+|++++ ++++. . .++++ ++.+|++|+.++ +.++ +++||
T Consensus 13 ~~~~~i~~a~~~~~~~~~~~~~~--~~~~~l~~~~~a~~~g-~------~~~~v--~~~sgt~al~~a--l~~l~~~~Gd 79 (377)
T 3ju7_A 13 VPVIEYLDELKEIDASHIYTNYG--PINQRFEQTIMSGFFQ-N------RGAVT--TVANATLGLMAA--IQLKKRKKGK 79 (377)
T ss_dssp CCGGGGHHHHHHHHHHTCCSSSC--HHHHHHHHHHHHHTST-T------CSEEE--EESCHHHHHHHH--HHHHSCTTCC
T ss_pred CCcHHHHHHHHHHHHcCCcccCC--HHHHHHHHHHHHHHhC-C------CCeEE--EeCCHHHHHHHH--HHHcCCCCcC
Confidence 44444445444454433211123 3578999999 99873 1 12444 799999999888 6666 78999
Q ss_pred EEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCC--cEEEEeCCCCCCCCCCCCHHHHHHHHH
Q 013839 145 HIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDS--SFFLLHPSAHNPTGVDPTEEQWREISY 222 (435)
Q Consensus 145 ~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~--~~~v~~~~p~NPtG~~~~~~~l~~i~~ 222 (435)
+|+++.|+|..+...+...|++++.+++ +++++.+|++++++++.+ ++ +++++ |+||||...+ +++|.+
T Consensus 80 ~Vi~~~~~~~~~~~~~~~~G~~~~~v~~-~~~~~~~d~~~l~~~i~~--~~~~tk~v~---~~~~~G~~~~---~~~i~~ 150 (377)
T 3ju7_A 80 YALMPSFTFPATPLAAIWCGLEPYFIDI-SIDDWYMDKTVLWDKIEE--LKEEVAIVV---PYATFGSWMN---LEEYEE 150 (377)
T ss_dssp EEEEESSSCTHHHHHHHHTTCEEEEECB-CTTTCSBCHHHHHHHHHH--HGGGEEEEC---CBCGGGBCCC---CHHHHH
T ss_pred EEEECCCCcHHHHHHHHHcCCEEEEEec-CCccCCcCHHHHHHHHhc--CCCCceEEE---EECCCCCccC---HHHHHH
Confidence 9999999999999999999999999998 456789999999998831 34 78776 5789998765 558888
Q ss_pred HHHhcCceeeeeccCCCccCCCCcccHHHHHHh-hhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHH
Q 013839 223 QFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIF-LEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQ 301 (435)
Q Consensus 223 ~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~ 301 (435)
+|+ ||+++|+|+++........ ... ....+-.++..+.+|.++. | +.|+++ +++++ ++++++.
T Consensus 151 la~-~~~~vi~D~a~a~g~~~~~-------~~~g~~~~d~~~~S~~~~K~l~~-g-~gG~~~--~~~~~----l~~~~~~ 214 (377)
T 3ju7_A 151 LEK-KGVPVVVDAAPGFGLMNGG-------MHYGQDFSGMIIYSFHATKPFGI-G-EGGLIY--SKNEE----DIQRIKR 214 (377)
T ss_dssp HHH-TTCCBEEECTTCTTCEETT-------EETTTTCSSEEEEECBTTSSSCC-B-SCEEEE--ESCHH----HHHHHHH
T ss_pred HHh-cCCEEEEECCCccCCeECC-------EeccCCCCcEEEEECCCCCcCCC-C-CcEEEE--ECCHH----HHHHHHH
Confidence 899 9999999999754332110 001 0112333334445799984 5 567774 55677 6666666
Q ss_pred Hhhcc------------ccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCccccccC
Q 013839 302 IARAM------------YGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSS-LNWEHITNQ 368 (435)
Q Consensus 302 ~~~~~------------~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~ 368 (435)
..... ...++.+.+.++...+ +.+....++.+++++.+.+.|++++.- ..+......
T Consensus 215 ~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l----------~~l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~ 284 (377)
T 3ju7_A 215 MGNFGFDTNRECTMMGFNCKMSEYAAAIGIATM----------KKWDDKLKERTRISEWYKQLLQSNGLMKKGWQLQKTE 284 (377)
T ss_dssp HTBTTBCTTSCBCSSCCBCCCCHHHHHHHHHHH----------HTHHHHHHHHHHHHHHHHHHHHHTTTTTTTCBCCCCS
T ss_pred HHhcCCCCCCceeeccccCCCCHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCC
Confidence 54321 1223334333322222 334555666677777778888877520 001111111
Q ss_pred cce--eEecCC----CHHHHHHHhhhccEEEeCCC-----------------------------cEEec-cCCCCcHHHH
Q 013839 369 LGM--FCFSGL----TPYQVDRLAKEFHIYMTQDG-----------------------------RISMA-GVTTGNVNYL 412 (435)
Q Consensus 369 ~g~--~~~~~~----~~~~~~~ll~~~gI~i~pgg-----------------------------Ris~~-~~~~e~i~~~ 412 (435)
..+ |..+.+ +.+.+.+.|+++||.+..+- |+.+. .+++++++++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~~~t~~di~~v 364 (377)
T 3ju7_A 285 AVIQQFMPILCPEEVRNKQVIEDLKKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWEGMTKEIVEQI 364 (377)
T ss_dssp CBCCSSEEEECCTTSCHHHHHHHHHTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCTTCCHHHHHHH
T ss_pred cceEEEEEEEeCChhhHHHHHHHHHHCCCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCCCCCCHHHHHHH
Confidence 111 212222 36666666678999886430 55543 3478899999
Q ss_pred HHHHHHHHHh
Q 013839 413 ANAIHEVTRS 422 (435)
Q Consensus 413 ~~~l~~~l~~ 422 (435)
++.|++++..
T Consensus 365 ~~~l~~~~~~ 374 (377)
T 3ju7_A 365 VICLGQKVVS 374 (377)
T ss_dssp HHHHTC----
T ss_pred HHHHHHHHhc
Confidence 9999887754
No 199
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=99.89 E-value=1.2e-21 Score=191.93 Aligned_cols=278 Identities=14% Similarity=0.020 Sum_probs=183.4
Q ss_pred CcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHH----HHhhCCCC
Q 013839 91 ASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHN----IWRDAQIP 166 (435)
Q Consensus 91 ~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~----~~~~~g~~ 166 (435)
.....+|++.+++++... ..+ ++.+|++|+.++ +.+++.+||+|++++|+|.++.. .+...|++
T Consensus 81 ~p~~~~le~~lA~l~g~~--------~~v--~~~sG~~Ai~~a--l~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~ 148 (430)
T 3ri6_A 81 NPTVEDLEQRLKNLTGAL--------GVL--ALGSGMAAISTA--ILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGIE 148 (430)
T ss_dssp CHHHHHHHHHHHHHHTCS--------EEE--EESCHHHHHHHH--HHHHCCTTCEEEEETTCCHHHHHHHHTHHHHTTCE
T ss_pred CHHHHHHHHHHHHHHCCC--------cEE--EECCHHHHHHHH--HHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCE
Confidence 355678999999987322 222 577889998888 77778999999999999998877 56688999
Q ss_pred eeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCc
Q 013839 167 ERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLD 246 (435)
Q Consensus 167 ~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~ 246 (435)
++.++.. |+++++++++ +++++|++++|+||||.+.+ +++|.++|+++|+++|+|++|.......
T Consensus 149 ~~~v~~~-------d~~~l~~ai~---~~t~~v~~e~p~NptG~~~d---l~~i~~la~~~g~~livD~a~~~~~~~~-- 213 (430)
T 3ri6_A 149 VRFVDVM-------DSLAVEHACD---ETTKLLFLETISNPQLQVAD---LEALSKVVHAKGIPLVVDTTMTPPYLLE-- 213 (430)
T ss_dssp EEEECTT-------CHHHHHHHCC---TTEEEEEEESSCTTTCCCCC---HHHHHHHHHTTTCCEEEECTTSCTTTCC--
T ss_pred EEEeCCC-------CHHHHHHhhC---CCCeEEEEECCCCCCCeecC---HHHHHHHHHHcCCEEEEECCCcccccCC--
Confidence 9888751 8899999997 68899999999999999986 5589999999999999999986544321
Q ss_pred ccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhH-----H---------HHHHHHHHHHh-hccccCCC
Q 013839 247 KDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQ-----A---------AAIRSQIQQIA-RAMYGSPP 311 (435)
Q Consensus 247 ~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~-----~---------~~~~~~l~~~~-~~~~~~~~ 311 (435)
+ .....++++.|+||.++.+|..+|.+++...+... . ..++..++... ......++
T Consensus 214 ----~-----~~~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~~~~~~g~~~~ 284 (430)
T 3ri6_A 214 ----A-----KRLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQNLGPSLS 284 (430)
T ss_dssp ----G-----GGGTCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHTHHHHHCCCCC
T ss_pred ----h-----HHcCCEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHHHHHHhcCCCCC
Confidence 1 11134689999999998777777777631122211 0 01122222211 12222333
Q ss_pred hhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcc-ccccC----------------cceeEe
Q 013839 312 VHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWE-HITNQ----------------LGMFCF 374 (435)
Q Consensus 312 ~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~----------------~g~~~~ 374 (435)
....+.+...+ +.+....++..+++..+.+.|++.+. +. +..|. ||+.+|
T Consensus 285 ~~~a~l~l~~l----------~~l~~r~~~~~~na~~la~~L~~~p~---v~~V~~P~l~~~p~~~~~~~~~g~Gg~~ls 351 (430)
T 3ri6_A 285 PHNAYLQSLGL----------ETMALRIERSCQNAQELAHWLLSIPQ---VKCVNHPSLPDSPFYAIAKRQFRYAGSILT 351 (430)
T ss_dssp HHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHTTCTT---CEEEECTTSTTSTTHHHHHHHCSSCCSEEE
T ss_pred HHHHHHHHhhh----------hhHHHHHHHHHHHHHHHHHHHhCCCC---ccEEECCCCCCCccHHHHHHhCCCCceEEE
Confidence 33222221111 33455556777888888888877642 22 22222 564666
Q ss_pred cCC-CHHHHHHHh---hhccEEEeCCC-------------------------------cEEeccCCCCcHHHHHHHHHHH
Q 013839 375 SGL-TPYQVDRLA---KEFHIYMTQDG-------------------------------RISMAGVTTGNVNYLANAIHEV 419 (435)
Q Consensus 375 ~~~-~~~~~~~ll---~~~gI~i~pgg-------------------------------Ris~~~~~~e~i~~~~~~l~~~ 419 (435)
+.+ +.+...+++ +..++.+..|| |+|++ -|+.+.+++.|+++
T Consensus 352 f~l~~~~~~~~~~~~l~~~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRlsvG---~E~~~dl~~dl~~a 428 (430)
T 3ri6_A 352 FELESKEASYRFMDALKLIRRATNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSVG---IEEIEDLKEDILQA 428 (430)
T ss_dssp EECSSHHHHHHHHHHCSSSEECSCCSCSSCEEECTGGGC---------CGGGSCTTEEEEECC---SSCHHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHhCCcceecCCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEec---cCCHHHHHHHHHHh
Confidence 666 334333333 33455555442 77764 47888888888876
Q ss_pred H
Q 013839 420 T 420 (435)
Q Consensus 420 l 420 (435)
+
T Consensus 429 l 429 (430)
T 3ri6_A 429 L 429 (430)
T ss_dssp H
T ss_pred h
Confidence 5
No 200
>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*
Probab=99.89 E-value=1.9e-21 Score=189.19 Aligned_cols=214 Identities=15% Similarity=0.078 Sum_probs=156.6
Q ss_pred cccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHh-----hCCCC
Q 013839 92 SVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWR-----DAQIP 166 (435)
Q Consensus 92 ~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~-----~~g~~ 166 (435)
....+|++.++++.... +.+ ++++|++|+.++ ++++.+||+|++++|+|.+....+. ..|++
T Consensus 67 p~~~~l~~~la~l~g~~--------~~~--~~~sG~~Ai~~~---~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~ 133 (400)
T 3nmy_A 67 PTRFAYERCVAALEGGT--------RAF--AFASGMAATSTV---MELLDAGSHVVAMDDLYGGTFRLFERVRRRTAGLD 133 (400)
T ss_dssp HHHHHHHHHHHHHHTCS--------EEE--EESSHHHHHHHH---HTTSCTTCEEEEESSCCHHHHHHHHHTHHHHHCCE
T ss_pred HHHHHHHHHHHHHhCCC--------CEE--EecCHHHHHHHH---HHHcCCCCEEEEeCCCchHHHHHHHHhhHhhcCeE
Confidence 34567888888887322 233 688889998764 5578899999999999986655543 35888
Q ss_pred eeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCc
Q 013839 167 ERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLD 246 (435)
Q Consensus 167 ~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~ 246 (435)
++.++. .|++++++++. +++++|++++|+||||.+.+ +++|.++|++||+++|+|++|....+..
T Consensus 134 ~~~v~~-------~d~~~l~~~i~---~~~~~v~~e~~~np~G~~~~---l~~i~~la~~~g~~livDe~~~~~~~~~-- 198 (400)
T 3nmy_A 134 FSFVDL-------TDPAAFKAAIR---ADTKMVWIETPTNPMLKLVD---IAAIAVIARKHGLLTVVDNTFASPMLQR-- 198 (400)
T ss_dssp EEEECT-------TSHHHHHHHCC---TTEEEEEEESSCTTTCCCCC---HHHHHHHHHHTTCEEEEECTTTHHHHCC--
T ss_pred EEEECC-------CCHHHHHHHhc---cCCCEEEEECCCCCCCeeec---HHHHHHHHHHcCCEEEEECCCcccccCC--
Confidence 888865 17899999997 67899999999999999986 7799999999999999999985322211
Q ss_pred ccHHHHHHhhhcCCeEEEEecccccccccCCcccE-EEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCCh
Q 013839 247 KDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGC-LSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDP 325 (435)
Q Consensus 247 ~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~ 325 (435)
+ .+ ...++++.|+||.++.+|.++|+ ++ ++.+++ +++.+...........+.+.+.++...++.
T Consensus 199 ----~----~~-~g~div~~S~sK~l~g~g~~~gG~~v-v~~~~~----~~~~l~~~~~~~g~~~~~~~a~~~l~~l~~- 263 (400)
T 3nmy_A 199 ----P----LS-LGADLVVHSATKYLNGHSDMVGGIAV-VGDNAE----LAEQMAFLQNSIGGVQGPFDSFLALRGLKT- 263 (400)
T ss_dssp ----G----GG-GTCSEEEEETTTTTTCSSSCCCEEEE-ECSCHH----HHHHHHHHHHHHCCBCCHHHHHHHHHHHTT-
T ss_pred ----h----hh-cCCcEEEecCccccCCCCCcceeEEE-EeCCHH----HHHHHHHHHHhcCCCCCHHHHHHHHHhHhH-
Confidence 0 01 14568999999999988889887 44 355777 777777665555556666666555555543
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 013839 326 NLKSLWIDEVKIMADRIQRKRTTLRQNLEKLG 357 (435)
Q Consensus 326 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 357 (435)
+....++..++.+.+.+.|++.+
T Consensus 264 ---------l~~r~~~~~~~a~~l~~~L~~~p 286 (400)
T 3nmy_A 264 ---------LPLRMRAHCENALALAQWLETHP 286 (400)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHTTCT
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHcCC
Confidence 23445566777778888887654
No 201
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate aminotransferase fold, oxidoreductase; HET: PLP; 2.35A {Yersinia pseudotuberculosis} PDB: 3bcx_A
Probab=99.89 E-value=4.1e-21 Score=189.63 Aligned_cols=179 Identities=7% Similarity=-0.094 Sum_probs=134.0
Q ss_pred hHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHH---------hC
Q 013839 71 QCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRR---------FH 141 (435)
Q Consensus 71 ~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~---------~~ 141 (435)
+.++++.+.+... .|.+..+..++++++++++. .. +++ ++.+|++|+.++ +.++ +.
T Consensus 44 ~~~~a~~~~~~~~---~~~~~~~~~~l~~~la~~~g-~~-------~~i--~~~sGt~a~~~a--l~~l~~~~~~~~~~~ 108 (437)
T 3bb8_A 44 KELQLMVEASLDG---WLTTGRFNDAFEKKLGEYLG-VP-------YVL--TTTSGSSANLLA--LTALTSPKLGVRALK 108 (437)
T ss_dssp HHHHHHHHHHHHC---CCBSCHHHHHHHHHHHHHHT-CS-------EEE--EESCHHHHHHHH--HHHTTCGGGGGGSCC
T ss_pred HHHHHHHHHHHcC---CcCCChHHHHHHHHHHHHHC-CC-------cEE--EeCCHHHHHHHH--HHHhhhcccccccCC
Confidence 4444444444322 25566788999999999983 31 334 688999998888 5555 67
Q ss_pred CCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeC-CCCCCCCCCCCHHHHHHH
Q 013839 142 PESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHP-SAHNPTGVDPTEEQWREI 220 (435)
Q Consensus 142 ~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~-~p~NPtG~~~~~~~l~~i 220 (435)
+||+|+++.|+|..+...++..|++++.++.. ++++.+|++++++++. +++++++++ +++|| .++++|
T Consensus 109 ~gd~Vi~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~~~d~~~l~~~i~---~~~~~v~~~~~~g~~-------~~~~~i 177 (437)
T 3bb8_A 109 PGDEVITVAAGFPTTVNPTIQNGLIPVFVDVD-IPTYNVNASLIEAAVS---DKTKAIMIAHTLGNL-------FDLAEV 177 (437)
T ss_dssp TTCEEEECSSSCHHHHHHHHHTTCEEEECCEE-TTTTEECGGGHHHHCC---TTEEEEEEECGGGCC-------CCHHHH
T ss_pred CcCEEEECCCCcHHHHHHHHHcCCEEEEEecc-CccCCcCHHHHHHhcC---CCCeEEEEeCCCCCh-------hcHHHH
Confidence 99999999999999999999999999999883 4468899999999997 578888886 46665 457799
Q ss_pred HHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEE
Q 013839 221 SYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSI 284 (435)
Q Consensus 221 ~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~ 284 (435)
.++|+++|+++|+|++|......+. . ..... ..+++.||+|..+++|.|+|+++.
T Consensus 178 ~~l~~~~~~~li~D~a~~~g~~~~~--~-----~~~~~--~d~~~~s~~~~k~l~~g~gg~~~~ 232 (437)
T 3bb8_A 178 RRVADKYNLWLIEDCCDALGSTYDG--K-----MAGTF--GDIGTVSFYPAKHITMGEGGAVFT 232 (437)
T ss_dssp HHHHHHHTCEEEEECTTCTTCEETT--E-----ETTSS--SSEEEEECSTTSSSCCSSCEEEEE
T ss_pred HHHHHHcCCEEEEECccccCceECC--e-----ecccc--cCEEEEECcCCcCCCCCCeEEEEe
Confidence 9999999999999999874321111 0 11111 136778998888889999999963
No 202
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}
Probab=99.88 E-value=1.3e-21 Score=196.11 Aligned_cols=321 Identities=12% Similarity=0.078 Sum_probs=205.1
Q ss_pred cchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhH---cCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCC---
Q 013839 69 VLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLV---YGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHP--- 142 (435)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l---~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~--- 142 (435)
+++.+.+++....+.....|....+..++.+.+.+++ ++....+ ++.+.+.+++||++|+.++ +++...+
T Consensus 68 ~~~~v~~~l~~~~~~~~~~~~~~p~~~~le~~~~~~la~l~g~~~~~--~~~~~g~~t~ggtea~~~a--~~a~~~~~~~ 143 (502)
T 3hbx_A 68 MEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEE--AETAVGVGTVGSSEAIMLA--GLAFKRKWQN 143 (502)
T ss_dssp CCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCS--SCCCEEEEESSHHHHHHHH--HHHHHHHHHH
T ss_pred CCHHHHHHHHHHhccCCCChhcChhHHHHHHHHHHHHHHHhCCCccc--ccCCcceecCcHHHHHHHH--HHHHHHHHhH
Confidence 3444555555443322333444444555655555544 2332110 2334455699999999887 4444333
Q ss_pred -----CC-----EEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCC
Q 013839 143 -----ES-----HIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDP 212 (435)
Q Consensus 143 -----gd-----~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~ 212 (435)
|| +|+++.++|..+...++..|++++.+++ +++++.+|+++|++++. +++++|++++|+||||.+.
T Consensus 144 ~~~~~G~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~-~~~~~~~d~~~l~~~i~---~~t~~v~~~~~~n~tG~~~ 219 (502)
T 3hbx_A 144 KRKAEGKPVDKPNIVTGANVQVCWEKFARYFEVELKEVKL-SEGYYVMDPQQAVDMVD---ENTICVAAILGSTLNGEFE 219 (502)
T ss_dssp HHHHTTCCCSCCEEEEETTCCHHHHHHHHHTTCEEEEECC-BTTBCSCCHHHHHHHCC---TTEEEEEEEBSCTTTCCBC
T ss_pred HHHhcCCCCCCcEEEEcCCchHHHHHHHHHcCceeEEEec-CCCcCcCCHHHHHHHHh---hCCEEEEEecCCCCCCccc
Confidence 76 9999999999999999999999999998 34458999999999998 6789999999999999986
Q ss_pred CHHHHHHHHHHHHhc------CceeeeeccCCCcc----CCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEE
Q 013839 213 TEEQWREISYQFKVK------GHFPFFDMAYQGFA----SGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCL 282 (435)
Q Consensus 213 ~~~~l~~i~~~~~~~------~~~vi~Deay~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~ 282 (435)
+ +++|.++|+++ ++++++|++|.++. .+... .. .....-+++..|.+|.++ .+.++||+
T Consensus 220 ~---l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~---~~----~~~~~~D~v~~s~hK~l~-~p~g~G~~ 288 (502)
T 3hbx_A 220 D---VKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELE---WD----FRLPLVKSINVSGHKYGL-VYAGIGWV 288 (502)
T ss_dssp C---HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCC---CS----TTSTTEEEEEEETTTTTC-CCSSCEEE
T ss_pred C---HHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccc---cc----cCCCCceEEEECcccccC-CCCCeEEE
Confidence 5 55888889998 99999999997654 11110 00 112245677788999875 66788998
Q ss_pred EEEecChhHHHHHHHHHHHHh-hccc---------cCC---ChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 013839 283 SILCVDSKQAAAIRSQIQQIA-RAMY---------GSP---PVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTL 349 (435)
Q Consensus 283 ~~~~~~~~~~~~~~~~l~~~~-~~~~---------~~~---~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l 349 (435)
++ .+++ .+....... .+.. .+. ..+.++++...+.. +...+..++..++++++
T Consensus 289 ~~--~~~~----~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg~--------~g~~~~~~~~~~~a~~l 354 (502)
T 3hbx_A 289 IW--RNKE----DLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGH--------EGYRNVMENCRENMIVL 354 (502)
T ss_dssp EE--SSGG----GSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
T ss_pred EE--eCHH----HhhHHhccCcccccCCCCCccccCCchHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
Confidence 63 3554 321111000 0100 111 12233333333321 44567778888888999
Q ss_pred HHHHHhhCCCCCcccccc--CcceeEec--C---CCHHHHHHHhhhccEEEe----CC---C----cEEecc-CCCCcHH
Q 013839 350 RQNLEKLGSSLNWEHITN--QLGMFCFS--G---LTPYQVDRLAKEFHIYMT----QD---G----RISMAG-VTTGNVN 410 (435)
Q Consensus 350 ~~~l~~~~~~~~~~~~~~--~~g~~~~~--~---~~~~~~~~ll~~~gI~i~----pg---g----Ris~~~-~~~e~i~ 410 (435)
.+.|++++. +.+..+ ..+++.|- + ++...+.+.|.++||.+. |. + ||++.. .+.++++
T Consensus 355 ~~~L~~~~~---~~~~~~~~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~p~~~~~~~~lRisv~~~~t~edid 431 (502)
T 3hbx_A 355 REGLEKTER---FNIVSKDEGVPLVAFSLKDSSCHTEFEISDMLRRYGWIVPAYTMPPNAQHITVLRVVIREDFSRTLAE 431 (502)
T ss_dssp HHHHHTTTC---EEECSCSSSSSEEEEEESSCSSCCHHHHHHHHHTTTCBCCEEECCTTCTTCEEEEEECCTTCCHHHHH
T ss_pred HHHHHhCCC---EEEEeCCCCceEEEEEecCCCcCCHHHHHHHHHhCCcEEeeccCCcccCCceEEEEEeCCCCCHHHHH
Confidence 999998862 445443 44444332 2 344445444567899864 21 2 998853 3789999
Q ss_pred HHHHHHHHHHHhhhh
Q 013839 411 YLANAIHEVTRSEQE 425 (435)
Q Consensus 411 ~~~~~l~~~l~~~~~ 425 (435)
.+++.|+++++++.+
T Consensus 432 ~li~~L~~~l~~l~~ 446 (502)
T 3hbx_A 432 RLVIDIEKVMRELDE 446 (502)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999987654
No 203
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Probab=99.88 E-value=1.5e-21 Score=189.04 Aligned_cols=288 Identities=11% Similarity=0.111 Sum_probs=192.8
Q ss_pred HHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhH--HHHhhCCC--Ceeee
Q 013839 95 TKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHH--NIWRDAQI--PERTY 170 (435)
Q Consensus 95 ~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~--~~~~~~g~--~~~~v 170 (435)
.++++.+++++ +.. +.+. ++.||++|++++ + ..+.+||+|++++++|.++. ..++..|. +++.+
T Consensus 38 ~~~~~~l~~~~-~~~------~~v~--~~~sgt~a~~~~--~-~~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~~~~ 105 (379)
T 3ke3_A 38 NDLLSNLKTVY-NAE------AAVI--IPGSGTYGMEAV--A-RQLTIDEDCLIIRNGWFSYRWTQILEKGKFAKSSTVL 105 (379)
T ss_dssp HHHHHHHHHHH-TCS------EEEE--EESCHHHHHHHH--H-HHHCTTCEEEEEECSHHHHHHHHHHHHHCCSSEEEEE
T ss_pred HHHHHHHHHHh-CCC------CEEE--EcCChhHHHHHH--H-HhCCCCCeEEEEeCCchhHHHHHHHHHhCCCCceEEE
Confidence 35555666655 332 3555 789999999887 3 34679999999999987653 34455554 56666
Q ss_pred eecCC------CC-CCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCC
Q 013839 171 HYYDP------DS-KSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASG 243 (435)
Q Consensus 171 ~~~~~------~~-~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~ 243 (435)
+.... .. ..+|++++++.+.+ ++++++++++++||||..++.+++++|.++|++||+++|+|+++. ..
T Consensus 106 ~~~~~g~~~~~~~~~~~d~~~l~~~i~~--~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~~--g~- 180 (379)
T 3ke3_A 106 TAERTEDTEAPKPFAPVDIETAVAKIKE--DKSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIAS--GC- 180 (379)
T ss_dssp ECEESSCCSSCCCEECCCHHHHHHHHHH--HTCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECTTC--TT-
T ss_pred eccccccccccCCCCCCCHHHHHHHHhh--cCCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEeccc--CC-
Confidence 65210 11 25899999999953 356788889999999999999999999999999999999999965 21
Q ss_pred CCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhh-------------------
Q 013839 244 DLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIAR------------------- 304 (435)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~------------------- 304 (435)
...+ +... +.++++.|++|.++ .+.++|++++ +++ +++.+.....
T Consensus 181 -~~~~---~~~~----~~d~~~~s~~K~l~-~~~g~g~~~~---~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 244 (379)
T 3ke3_A 181 -VWLD---MKEL----GIDVLISAPQKGWS-STPCAGLVML---SAA----AIKKVESTESNCFSLDLKQWLTIMRAYEN 244 (379)
T ss_dssp -CCCC---HHHH----TCSEEEECTTTTTC-SCCCEEEEEE---CHH----HHHHHHTCCCSCSTTCHHHHHHHHHHHHT
T ss_pred -cccc---cccc----CCCEEEecchhhcC-CCCceEEEEE---CHH----HHHhhhcCCCCceeecHHHHHHHHHhhhc
Confidence 1111 1111 34678899999886 3345788864 777 5555443110
Q ss_pred ---ccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccC---cceeEecCC-
Q 013839 305 ---AMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQ---LGMFCFSGL- 377 (435)
Q Consensus 305 ---~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~---~g~~~~~~~- 377 (435)
....+++...+.++.++|..-. ++.+++.+++++++++++++.|+++|. ....+. .+....+..
T Consensus 245 g~~~~~~t~~~~~~~a~~aal~~~~-----~~g~~~~~~~~~~l~~~l~~~l~~~g~----~~~~~~~~~~~~i~~~~~~ 315 (379)
T 3ke3_A 245 GGHAYHATMPTDSLRQFRDAILEAK-----EIGFDILRDAQWELGNRVRKVLTDKGI----ESVAAEGFEAPGVVVSYTE 315 (379)
T ss_dssp TSCCCSSCCCHHHHHHHHHHHHHHH-----HHCHHHHHHHHHHHHHHHHHHHHHTTC----CBSBCTTCBCSSEEEEECS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHH-----HhcHHHHHHHHHHHHHHHHHHHHHcCC----EecCCccccCceEEEEccC
Confidence 0112566666666666664321 123678888999999999999999874 233222 221222222
Q ss_pred CHHH-HHHHhhhccEEEeCC----------C---cEEecc-CCCCcHHHHHHHHHHHHHhhh
Q 013839 378 TPYQ-VDRLAKEFHIYMTQD----------G---RISMAG-VTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 378 ~~~~-~~~ll~~~gI~i~pg----------g---Ris~~~-~~~e~i~~~~~~l~~~l~~~~ 424 (435)
+.+. ..+.|+++||.+.+| + ||++.. .+++++++++++|+++++++.
T Consensus 316 ~~~~~~~~~L~~~Gi~v~~g~~~~~~~~~~~~~lRis~~~~~t~~di~~~~~~l~~~l~~~~ 377 (379)
T 3ke3_A 316 RDDMHKGSAFAEAGLQIAAGVPLKVGEPDNFKTFRLGLFGLDKLTDIDGTVERFEKALDEVL 377 (379)
T ss_dssp CHHHHSSHHHHHTTCCCEECCCCSSCCCTTCCEEEEECCSHHHHTCHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHCCeEEeCCccccccccCcCCEEEEeCCcCCCHHHHHHHHHHHHHHHHHhc
Confidence 2332 134456789998875 3 888743 378999999999999987654
No 204
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*
Probab=99.88 E-value=2e-20 Score=182.59 Aligned_cols=213 Identities=10% Similarity=0.049 Sum_probs=151.8
Q ss_pred cccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHH----hhCCCCe
Q 013839 92 SVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIW----RDAQIPE 167 (435)
Q Consensus 92 ~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~ 167 (435)
....++++.+|+++... +.+ ++.||++|+.++ +.+++.+||+|+++.|.|.+....+ +..|+++
T Consensus 82 p~~~~le~~lA~l~g~~--------~~i--~~ssGt~Ai~~a--l~~l~~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~~v 149 (415)
T 2fq6_A 82 LTHFSLQQAMCELEGGA--------GCV--LFPCGAAAVANS--ILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTT 149 (415)
T ss_dssp HHHHHHHHHHHHHHTCS--------EEE--EESSHHHHHHHH--HHTTCCTTCEEEEETTSCHHHHHHHHHTGGGGTCEE
T ss_pred chHHHHHHHHHHHhCCC--------eEE--EeCCHHHHHHHH--HHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCcEE
Confidence 34568999999987321 233 678999999888 7777899999999999998877554 4568888
Q ss_pred eeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHh--cCceeeeeccCCCccCCCC
Q 013839 168 RTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKV--KGHFPFFDMAYQGFASGDL 245 (435)
Q Consensus 168 ~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~--~~~~vi~Deay~~~~~~~~ 245 (435)
..++. .|+++++++++ +++++|++++|+||||.+.+ +++|+++|++ ||+++|+|++|.......
T Consensus 150 ~~v~~-------~d~~~le~ai~---~~tklV~~e~~~NptG~v~d---l~~I~~la~~~~~g~~livD~a~a~~~~~~- 215 (415)
T 2fq6_A 150 SWFDP-------LIGADIVKHLQ---PNTKIVFLESPGSITMEVHD---VPAIVAAVRSVVPDAIIMIDNTWAAGVLFK- 215 (415)
T ss_dssp EEECT-------TCGGGGGGGCC---TTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHCTTCEEEEECTTTTTTSSC-
T ss_pred EEECC-------CCHHHHHHhhc---cCCcEEEEECCCCCCCEeec---HHHHHHHHHhhcCCCEEEEECCCcccccCC-
Confidence 77754 17889999887 67899999999999999986 5699999999 999999999986543221
Q ss_pred cccHHHHHHhhhcCCeEEEEecccccccccCCc-ccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCC
Q 013839 246 DKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHR-VGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSD 324 (435)
Q Consensus 246 ~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~R-vG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~ 324 (435)
++ + ...++++.|+||.++.+|.+ +||++ + +++ +++.++.........++...+.++...+
T Consensus 216 -----p~----~-~g~Div~~S~sK~lg~~g~~~~G~l~--~-~~~----~~~~l~~~~~~~G~~~~~~~a~~~~~~l-- 276 (415)
T 2fq6_A 216 -----AL----D-FGIDVSIQAATKYLVGHSDAMIGTAV--C-NAR----CWEQLRENAYLMGQMVDADTAYITSRGL-- 276 (415)
T ss_dssp -----GG----G-GTCSEEEEETTTTTTCSSSCCCEEEE--E-CTT----THHHHHHHHHHTTCCCCHHHHHHHHHHH--
T ss_pred -----cc----c-cCCeEEEEeCccccCCCCCceEEEEE--e-CHH----HHHHHHHHHHhcCCCCCHHHHHHHHhhh--
Confidence 11 1 13568899999999988876 47875 3 666 5555555443222233433333222222
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 013839 325 PNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLG 357 (435)
Q Consensus 325 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 357 (435)
+.+....++..++.+.+.+.|++.+
T Consensus 277 --------~~l~~r~~~~~~n~~~l~~~L~~~~ 301 (415)
T 2fq6_A 277 --------RTLGVRLRQHHESSLKVAEWLAEHP 301 (415)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred --------hHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3334455666777778888887753
No 205
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}
Probab=99.87 E-value=2.2e-21 Score=191.62 Aligned_cols=286 Identities=12% Similarity=0.040 Sum_probs=178.4
Q ss_pred CCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCe
Q 013839 88 SISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPE 167 (435)
Q Consensus 88 Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~ 167 (435)
|.+.....++++.+++ + +.+ +++. +++|+++|+.++ +.+++.+||+|+++.|+|..+...+...|+++
T Consensus 53 ~~~~~~~~~~~~~la~-~-g~~------~~v~--~~~G~t~a~~~~--~~a~~~~gd~Vlv~~~~h~s~~~~~~~~G~~~ 120 (446)
T 2x3l_A 53 HHPEEVILKSMKQVEK-H-SDY------DGYF--LVNGTTSGILSV--IQSFSQKKGDILMARNVHKSVLHALDISQQEG 120 (446)
T ss_dssp TSCSSHHHHHHHHHCS-C-TTE------EEEE--ESSHHHHHHHHH--HHTTTTSSSCEEECTTCCHHHHHHHHHHTCCE
T ss_pred cCcchHHHHHHHHHHh-c-CCC------ceEE--EeCCHHHHHHHH--HHHhcCCCCEEEEecCccHHHHHHHHHcCCeE
Confidence 5555667788888888 5 432 3566 899999999888 77778899999999999999999999999999
Q ss_pred eeeeecCCCC----CCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCC-ccC
Q 013839 168 RTYHYYDPDS----KSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQG-FAS 242 (435)
Q Consensus 168 ~~v~~~~~~~----~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~-~~~ 242 (435)
+.++....++ +.+|++.| +. ++++++++++ +|+||.+.+ +++|.++|++||+++|+|++|.. +.|
T Consensus 121 ~~v~~~~~~~~~~~~~~d~~~l---~~---~~~~~v~~~~-~n~~G~~~~---l~~I~~l~~~~~~~livDea~~~~~~f 190 (446)
T 2x3l_A 121 HFIETHQSPLTNHYNKVNLSRL---NN---DGHKLVVLTY-PNYYGETFN---VEEVIKSLHQLNIPVLIDEAHGAHFGL 190 (446)
T ss_dssp EECEEEECTTTSSEEEEEC-------------CCEEEEES-SCTTSCCCC---HHHHHHHHHHTTCCEEEECTTCTTTTS
T ss_pred EEEeCeeccccCcCCCCCHHHH---cC---CCceEEEEEC-CCCCeEecC---HHHHHHHHHhcCCeEEEcchhhhhhcc
Confidence 9988731222 56788877 33 5678888888 566999987 56999999999999999999876 333
Q ss_pred CCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhh-ccccCCChhHHHHHHHH
Q 013839 243 GDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIAR-AMYGSPPVHGILLVATI 321 (435)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~q~~~~~~ 321 (435)
.+. ..+.. .. +..+++.|+||.++ ++.++||+++ +++..+ ...+..... ....+++.....++..+
T Consensus 191 ~~~---~~~~~---~~-g~Di~~~S~~K~l~-~~~g~g~l~~---~~~~i~--~~~~~~~~~~~~~~s~~~~~~aal~~a 257 (446)
T 2x3l_A 191 QGF---PDSTL---NY-QADYVVQSFHKTLP-ALTMGSVLYI---HKNAPY--RENIIEYLSYFQTSSPSYLIMASLESA 257 (446)
T ss_dssp TTS---CCCGG---GG-TCSEEEECHHHHSS-SCTTCEEEEE---ETTCTT--HHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred CCC---CCChH---Hc-CCCEEEECCccccc-cccccEEEEE---cCCcCC--HHHHHHHHHHHcCCCchHHHHHHHHHH
Confidence 321 11111 11 13489999999654 3345799974 444211 122332222 12233333333333222
Q ss_pred hCChhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEec---CCCHHHHHHHhhhccEEEe-CC
Q 013839 322 LSDPNLKSLWIDE-VKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFS---GLTPYQVDRLAKEFHIYMT-QD 396 (435)
Q Consensus 322 l~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~ll~~~gI~i~-pg 396 (435)
+.. +... .++..++..++++.+++. + +.+..+..+.++|+ +.+...+.+.|.++||.+. ++
T Consensus 258 ~~~------l~~~g~~~~~~~~~~l~~~l~~~----g----~~~~~~~~~~~l~i~~~~~~~~~l~~~L~~~GI~v~~~g 323 (446)
T 2x3l_A 258 AQF------YKTYDSTLFFAKRAQLIECLENK----G----FEMLQVDDPLKLLIKYEGFTGHDIQNWFMNAHIYLELAD 323 (446)
T ss_dssp HHH------HHHCCCHHHHHHHHHHHHHHHHH----T----CEEEECSSTTEEEEECTTSCHHHHHHHHHHTTEEESEEC
T ss_pred HHH------HHHhCHHHHHHHHHHHHHHHHHc----C----CEECcCCCCeEEEEEeCCcCHHHHHHHHHHCCCEEEecC
Confidence 210 0010 111344444444444443 4 34444444445666 3455555444455699998 55
Q ss_pred C---cEEecc-CCCCcHHHHHHHHHHHHHhh
Q 013839 397 G---RISMAG-VTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 397 g---Ris~~~-~~~e~i~~~~~~l~~~l~~~ 423 (435)
. |++++. .+++++ +++++|+++++..
T Consensus 324 ~~~iRi~~~~~~t~e~i-~l~~aL~~~~~~~ 353 (446)
T 2x3l_A 324 DYQALAILPLWHHDDTY-LFDSLLRKIEDMI 353 (446)
T ss_dssp SSCEEEECCCCCTTCCC-CHHHHHHHHHTCC
T ss_pred CCEEEEEeecCCCHHHH-HHHHHHHHHHHhh
Confidence 3 999864 278889 9999999987654
No 206
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=99.87 E-value=1.9e-20 Score=182.06 Aligned_cols=225 Identities=12% Similarity=0.067 Sum_probs=164.0
Q ss_pred CCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEe---cCCchhHHHHHHHHHHHhCCCCEEEEcC-CCChhhHHH--
Q 013839 86 LESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQ---ALSGTGACRLFAEFQRRFHPESHIYFPD-PTWSNHHNI-- 159 (435)
Q Consensus 86 ~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~---t~gg~~a~~~~~~~~~~~~~gd~Vlv~~-p~y~~~~~~-- 159 (435)
+.|+. .|...|++.+++++ +.. ... + +.+|++|+.++ +.++++|||+|++++ |.|..+...
T Consensus 54 ~~y~~-~~~~~Le~~lA~l~-g~e-------~al--v~p~~~sGt~Ai~~a--l~all~~GD~Vl~~~~~~y~~~~~~~~ 120 (409)
T 3jzl_A 54 YGYDD-EGRDTLERVYATVF-KTE-------AAL--VRPQIISGTHAISTV--LFGILRPDDELLYITGQPYDTLEEIVG 120 (409)
T ss_dssp TCTTC-HHHHHHHHHHHHHH-TCS-------EEE--EETTSCSHHHHHHHH--HHHHCCTTCEEEECSSSCCTTHHHHHT
T ss_pred CCCCh-hHHHHHHHHHHHHh-CCC-------cEE--EECCCccHHHHHHHH--HHHhcCCCCEEEEeCCCCcHhHHHHHh
Confidence 44544 46788999999987 331 222 4 78999998888 778899999999998 999988754
Q ss_pred --------HhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCC----CCCCCCCCCCHHHHHHHHHHHHh-
Q 013839 160 --------WRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPS----AHNPTGVDPTEEQWREISYQFKV- 226 (435)
Q Consensus 160 --------~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~----p~NPtG~~~~~~~l~~i~~~~~~- 226 (435)
++..|++++.++. .+++.+|+++++++++ ++++++++++ |+||||.+ .++++|+++|++
T Consensus 121 ~~g~~~~~l~~~G~~~~~v~~--~~~g~~d~e~l~~ai~---~~tklV~i~~s~g~p~nptg~v---~~l~~I~~la~~~ 192 (409)
T 3jzl_A 121 IRKQGQGSLKDFHIGYSSVPL--LENGDVDFPRIAKKMT---PKTKMIGIQRSRGYADRPSFTI---EKIKEMIVFVKNI 192 (409)
T ss_dssp SSSSSSSCTGGGTCEEEECCC--CTTSCCCHHHHHHHCC---TTEEEEEEECSCTTSSSCCCCH---HHHHHHHHHHHHH
T ss_pred cccchhhHHHHcCCEEEEeCC--CCCCCcCHHHHHHhcc---CCCeEEEEECCCCCCCCCcCcc---ccHHHHHHHHHhh
Confidence 4567888888887 3457899999999997 6789999999 99999864 788999999999
Q ss_pred -cCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCC-cccEEEEEecChhHHHHHHHHHHHHhh
Q 013839 227 -KGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGH-RVGCLSILCVDSKQAAAIRSQIQQIAR 304 (435)
Q Consensus 227 -~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~-RvG~~~~~~~~~~~~~~~~~~l~~~~~ 304 (435)
||+++++|++|..+.+... +. + ...+++++|+||.+|.+|. +.||+++ +++ +++.++....
T Consensus 193 ~~~~~livD~a~~~~~~~~~-----p~----~-~g~Div~~S~sK~lgg~~~~~GG~v~~---~~~----li~~l~~~~~ 255 (409)
T 3jzl_A 193 NPEVIVFVDNCYGEFVEYQE-----PP----E-VGADIIAGSLIKNPGGGLAKTGGYIAG---KEA----LVDLCGYRLT 255 (409)
T ss_dssp CTTCEEEEECTTCTTTSSCC-----SG----G-GTCSEEEEETTSGGGTTTCSSCEEEEE---CHH----HHHHHHHHHS
T ss_pred CCCCEEEEeCCcccccccCC-----cc----c-cCCeEEEECccccCCccCCceEEEEEe---CHH----HHHHHHHHhc
Confidence 9999999999987764311 11 1 1346899999999986653 3578854 888 7777766432
Q ss_pred cc----ccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 013839 305 AM----YGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGS 358 (435)
Q Consensus 305 ~~----~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 358 (435)
.. ..++....+.++...+ +.....+++..+++..+.+.|+++|.
T Consensus 256 ~~~~g~~~g~~~~~~~~~l~gl----------~~~~~r~~~~~~~a~~la~~L~~~g~ 303 (409)
T 3jzl_A 256 TPGIGREAGASLYSLLEMYQGF----------FLAPHVTAQAIKGARFTAAMLAEFGV 303 (409)
T ss_dssp CTTTGGGCCCCTTCHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccccccccHHHHHHHHHHH----------hhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 21 1222221122222222 33456677888899999999999984
No 207
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9
Probab=99.87 E-value=3.5e-21 Score=191.01 Aligned_cols=284 Identities=13% Similarity=0.077 Sum_probs=182.7
Q ss_pred HHHHHHHHhHcCCCCccccCCCeeeEecCCchh-HHHHHHHHHHHh--CCCCEEEEcCCCChhhHHHHhhCCCCeeeeee
Q 013839 96 KMVEESVKLVYGKDSDVVKEGRSAGVQALSGTG-ACRLFAEFQRRF--HPESHIYFPDPTWSNHHNIWRDAQIPERTYHY 172 (435)
Q Consensus 96 ~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~-a~~~~~~~~~~~--~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~ 172 (435)
++++.+++++ +.. ++ +. +|+||++ ++.++ +.++. .+|+.|+++++.|..+...++..|++++.++.
T Consensus 137 ~~~~~la~~~-g~~-----~~-~~--~t~g~te~a~~~a--l~~~~~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~ 205 (456)
T 2z67_A 137 KILESFFKQL-GLN-----VH-AI--ATPISTGMSISLC--LSAARKKYGSNVVIYPYASHKSPIKAVSFVGMNMRLVET 205 (456)
T ss_dssp HHHHHHHHHT-TCC-----CE-EE--EESSCHHHHHHHH--HHHHHHHHCCCEEEEECCCCHHHHHHHHHTTCEEEEECC
T ss_pred HHHHHHHHHc-CCC-----CC-EE--EeCcHHHHHHHHH--HHHHHHhcCCCEEEEECCCcHHHHHHHHHcCCCceEEEE
Confidence 3555555555 332 22 55 8999994 54434 23222 26788999999999999999999999988876
Q ss_pred cC-CCCCCcChHhHHHHh-hcC-CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccH
Q 013839 173 YD-PDSKSLDFAALMDDI-KNA-PDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDA 249 (435)
Q Consensus 173 ~~-~~~~~~d~e~l~~~i-~~~-~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~ 249 (435)
.+ ++++.+|+++|++++ +.. ..++.++++++||||||.+.+ +++|.++|+++|+++++|++|..+..+- ..
T Consensus 206 ~~~~~~~~~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~---l~~I~~la~~~g~~v~vD~A~~~~~~g~---~~ 279 (456)
T 2z67_A 206 VLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDD---IVEIAKICENYDIPHIINGAYAIQNNYY---LE 279 (456)
T ss_dssp EEETTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTCHHH---HH
T ss_pred eccCCCCCcCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCC---HHHHHHHHHHcCCcEEEECcchHHHHHh---hH
Confidence 31 345789999999999 420 136788888999999999865 5689999999999999999987665320 01
Q ss_pred HHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHH
Q 013839 250 QAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKS 329 (435)
Q Consensus 250 ~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~ 329 (435)
.....+.. ...+++.|++|.++ .+.++||++ +++++ +++.+...........+.+.+.++...+.
T Consensus 280 ~~~~~~~~--~~D~~~~s~hK~~~-~p~g~G~l~--~~~~~----~~~~l~~~~~g~~~~~~~~~~~aal~~l~------ 344 (456)
T 2z67_A 280 KLKKAFKY--RVDAVVSSSDKNLL-TPIGGGLVY--STDAE----FIKEISLSYPGRASATPVVNTLVSLLSMG------ 344 (456)
T ss_dssp HHHHHHTS--CCSEEEEEHHHHHC-CCSSCEEEE--ESCHH----HHHHHHTTSCSCBCSHHHHHHHHHHHHHH------
T ss_pred HHHHhhCC--CCCEEEEcCCCCcC-CCCCeEEEE--EcCHH----HHhhcCcCCCCCCCCCHHHHHHHHHHHHH------
Confidence 11111111 33467889999765 568899996 44566 55555332111111122333444433332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh----CCCCCccccccCcceeEecCC--C---HHHHHHHhhhccE---EEe---
Q 013839 330 LWIDEVKIMADRIQRKRTTLRQNLEKL----GSSLNWEHITNQLGMFCFSGL--T---PYQVDRLAKEFHI---YMT--- 394 (435)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~g~~~~~~~--~---~~~~~~ll~~~gI---~i~--- 394 (435)
.+.+++..++..++++++.+.|+++ | +.+..++ +++. +.+ + .++...| .+.|| .+.
T Consensus 345 --~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g----~~v~~~~-~~v~-~~~~~~~~~~~l~~~L-~~~gi~~~rv~~~~ 415 (456)
T 2z67_A 345 --SKNYLELVKNQKNSKKLLDELLNDLSKKTG----GKFLDVE-SPIA-SCISVNSDPVEIAAKL-YNLRVTGPRGIKKT 415 (456)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHSS----CCBCCCC-CSSE-EEEECSSCHHHHHHHH-HHTTEESCEEECTT
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHhcccccC----CEecCCC-CeEE-EEEecccHHHHHHHHH-HHcCCCcceEEeec
Confidence 1456778888999999999999887 5 2344455 4333 222 2 2444555 45665 343
Q ss_pred -----------CCC--cEEec-cCCCCcHHHHHHHHHHHH
Q 013839 395 -----------QDG--RISMA-GVTTGNVNYLANAIHEVT 420 (435)
Q Consensus 395 -----------pgg--Ris~~-~~~~e~i~~~~~~l~~~l 420 (435)
+.+ |++++ ..+++++++++++|++++
T Consensus 416 g~f~G~~~~~~~~~~vr~s~~~~~t~eeid~~l~~L~~~~ 455 (456)
T 2z67_A 416 DHFGNCYLGTYTHDYIVMNAAIGVRTEDIVNSVSKLEKIL 455 (456)
T ss_dssp CHHHHTCSSCCSCCEEEEECCTTCCHHHHHHHHHHHHTC-
T ss_pred CccccccccccCcchhhhhhhcCCCHHHHHHHHHHHHHHh
Confidence 223 88876 348899999999998754
No 208
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Probab=99.87 E-value=2.2e-21 Score=194.13 Aligned_cols=327 Identities=11% Similarity=0.058 Sum_probs=204.6
Q ss_pred cchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhH---cCCCCccc----cCCCeeeEecCCchhHHHHHHHHHHHhC
Q 013839 69 VLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLV---YGKDSDVV----KEGRSAGVQALSGTGACRLFAEFQRRFH 141 (435)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l---~~~~~~~~----~~~~v~~~~t~gg~~a~~~~~~~~~~~~ 141 (435)
++..+.+++....+.....|....+..++.+++++++ ++.....+ ...+++ +|.||++|+.++. .+...
T Consensus 86 ~~~~~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v--~t~ggTeA~~~al--~~~~~ 161 (486)
T 1js3_A 86 YPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGV--IQGSASEATLVAL--LAART 161 (486)
T ss_dssp HHHHHHHHHHHHHCCCCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEE--EESCHHHHHHHHH--HHHHH
T ss_pred HHHHHHHHHHHHhCcCccccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeE--EcCCcHHHHHHHH--HHHHH
Confidence 4444555555544443556777677788888887776 23321000 012344 8999999987773 32211
Q ss_pred ---C------CC--------E--EEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCC---CCcEEE
Q 013839 142 ---P------ES--------H--IYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAP---DSSFFL 199 (435)
Q Consensus 142 ---~------gd--------~--Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~---~~~~~v 199 (435)
+ || + |++++++|..+...++..|++++.+|+ ++++.+|+++|++++.+.. ..+.++
T Consensus 162 ~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~s~~~~~~~~G~~v~~v~~--d~~~~~d~~~L~~~i~~~~~~g~~p~~v 239 (486)
T 1js3_A 162 KVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPS--DGKFAMRASALQEALERDKAAGLIPFFV 239 (486)
T ss_dssp HHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHHTCEEEEECC--CTTSCCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHhhhhhccCccchhcccCCCEEEEECCCCcHHHHHHHHhCCCceEEeec--CCCCCCCHHHHHHHHHHHHhCCCCceEE
Confidence 1 43 3 788999999999999999999999997 3568899999999997321 123588
Q ss_pred EeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcc
Q 013839 200 LHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRV 279 (435)
Q Consensus 200 ~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~Rv 279 (435)
++++|+||||.+ +++++|.++|++||+++++|++|..+..... +.... +.....-..++.+++|.++.| +++
T Consensus 240 v~~~~~n~tG~~---~~l~~I~~la~~~~~~lhvD~a~g~~~~~~~--~~~~~--~~g~~~adsi~~~~hK~~~~p-~~~ 311 (486)
T 1js3_A 240 VATLGTTSCCSF---DNLLEVGPICHEEDIWLHVDAAYAGSAFICP--EFRHL--LNGVEFADSFNFNPHKWLLVN-FDC 311 (486)
T ss_dssp EEEBSCTTTCCB---CCHHHHHHHHHHTTCEEEEECTTGGGGGGST--TTGGG--GTTGGGCSEEEECHHHHSSCC-SSC
T ss_pred EEeCCCCCCCCC---CCHHHHHHHHHHcCCEEEEehhhHHHHHHCH--HHHHH--hcCccccCeeEEchhhhcCCC-cce
Confidence 899999999976 5677999999999999999999977553210 01011 011112234567899999865 899
Q ss_pred cEEEEEecChhHHHHHHHHHH---HHhhc-----------------cccCCChhHHHHHHHHhCChhhHHHHHHHHHHHH
Q 013839 280 GCLSILCVDSKQAAAIRSQIQ---QIARA-----------------MYGSPPVHGILLVATILSDPNLKSLWIDEVKIMA 339 (435)
Q Consensus 280 G~~~~~~~~~~~~~~~~~~l~---~~~~~-----------------~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~ 339 (435)
||++ ++++..+ .+.+. .+... .......+.+.++...+.. +.+++..
T Consensus 312 G~l~--~~~~~~l---~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~g~--------~g~~~~~ 378 (486)
T 1js3_A 312 SAMW--VKRRTDL---TGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGV--------KGLQAYI 378 (486)
T ss_dssp EEEE--ESCHHHH---HGGGC------------CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHH--------HHHHHHH
T ss_pred EEEE--EeCHHHH---HHHhcCCchhhCCCcccccCCCCccccCCCCCCchhHHHHHHHHHHHhH--------HHHHHHH
Confidence 9996 4455411 11111 00000 0001223444444444321 4567777
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCcccc-ccCcceeEec--CC---CHHHHHHHhhhccEEE-eCC---C----cEEecc--
Q 013839 340 DRIQRKRTTLRQNLEKLGSSLNWEHI-TNQLGMFCFS--GL---TPYQVDRLAKEFHIYM-TQD---G----RISMAG-- 403 (435)
Q Consensus 340 ~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~g~~~~~--~~---~~~~~~~ll~~~gI~i-~pg---g----Ris~~~-- 403 (435)
++..++++++.+.|++++. +.+. ++..+++.|. +. +.++.+.+. +.|+.+ .++ | |++++.
T Consensus 379 ~~~~~~a~~l~~~L~~~~~---~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~-~~g~~~~~~~~~~~~~~lRi~~~~~~ 454 (486)
T 1js3_A 379 RKHVQLSHEFEAFVLQDPR---FEVCAEVTLGLVCFRLKGSDGLNEALLERIN-SARKIHLVPCRLRGQFVLRFAICSRK 454 (486)
T ss_dssp HHHHHHHHHHHHHHHHCTT---EEECSCCCSSEEEEEESSCHHHHHHHHHHHH-HHTSCBCEEEEETTEEEEEEECCCTT
T ss_pred HHHHHHHHHHHHHHhcCCC---eEEeCCCceeEEEEEecChHHHHHHHHHHHH-hcCCEEEEEEEECCEEEEEEEeCCCC
Confidence 8888899999999988632 4443 3556665543 22 233445554 457543 332 2 999754
Q ss_pred CCCCcHHHHHHHHHHHHHhhhhh
Q 013839 404 VTTGNVNYLANAIHEVTRSEQET 426 (435)
Q Consensus 404 ~~~e~i~~~~~~l~~~l~~~~~~ 426 (435)
.+++++++++++|+++++++..+
T Consensus 455 ~t~~di~~~~~~l~~~~~~~~~~ 477 (486)
T 1js3_A 455 VESGHVRLAWEHIRGLAAELLAA 477 (486)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHHHHHHHhh
Confidence 25679999999999998766543
No 209
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Probab=99.87 E-value=4.9e-20 Score=180.58 Aligned_cols=225 Identities=15% Similarity=0.067 Sum_probs=160.9
Q ss_pred ccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcC-CCChhhHHHH----------h
Q 013839 93 VSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPD-PTWSNHHNIW----------R 161 (435)
Q Consensus 93 g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~-p~y~~~~~~~----------~ 161 (435)
+..++++.+++++ +.... ..++. +.+|++|+.++ +.+++.+||+|++++ |.|..+...+ +
T Consensus 66 ~~~~l~~~la~~~-g~~~~---~~~i~---~~sGt~Ai~~a--l~al~~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~ 136 (431)
T 3ht4_A 66 GRDTLEKVYADVF-GAEAG---LVRPQ---IISGTHAISTA--LFGILRPGDELLYITGKPYDTLEEIVGVRGKGVGSFK 136 (431)
T ss_dssp HHHHHHHHHHHHT-TCSEE---CCBTT---SCSHHHHHHHH--HHTTCCTTCEEEECSSSCCTTHHHHTTSSSCSSSCSG
T ss_pred hHHHHHHHHHHHh-CCCcc---cccce---eeCHHHHHHHH--HHHhCCCCCEEEEeCCCCchhHHHHHhhcccccchHH
Confidence 4456777777776 33211 11222 45889998888 777889999999999 9999888655 3
Q ss_pred hCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeC-CCCCCCCCCCCHHHHHHHHHHHHh--cCceeeeeccCC
Q 013839 162 DAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHP-SAHNPTGVDPTEEQWREISYQFKV--KGHFPFFDMAYQ 238 (435)
Q Consensus 162 ~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~-~p~NPtG~~~~~~~l~~i~~~~~~--~~~~vi~Deay~ 238 (435)
..|++++.++. .+++.+|+++++++++ +++++|+++ +||||+|..++.+++++|+++|++ +|+++|+|++|.
T Consensus 137 ~~G~~~~~v~~--~~~~~~d~e~l~~~l~---~~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~ 211 (431)
T 3ht4_A 137 EYNIGYNAVPL--TEGGLVDFEAVAAAIH---SNTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYG 211 (431)
T ss_dssp GGTCEEEECCB--CTTSSBCHHHHHHHCC---TTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTC
T ss_pred HcCCEEEEeCC--CCCCCcCHHHHHhhcC---CCCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCCh
Confidence 47889999987 3357899999999997 678888888 599999999999999999999999 999999999998
Q ss_pred CccCCCCcccHHHHHHhhhcCCeEEEEecccccccc-cCCcccEEEEEecChhHHHHHHHHHHHHhhcccc----CCChh
Q 013839 239 GFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGL-YGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYG----SPPVH 313 (435)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~-~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~ 313 (435)
.+.++.. . . . ...+++++|+||.+|. .+...||+++ +++ +++.++........ +++..
T Consensus 212 ~~~~~~~---~--~----~-~g~Di~~~S~sK~lgg~~~~~GG~v~~---~~~----li~~l~~~~~~~~~g~~~~~~~~ 274 (431)
T 3ht4_A 212 EFIEEQE---P--C----H-VGADLMAGSLIKNPGGGIVKTGGYIVG---KEQ----YVEACAYRLTSPGIGAEAGASLY 274 (431)
T ss_dssp TTSSSCC---G--G----G-TTCSEEEEETTSGGGTTTCSSCEEEEE---CHH----HHHHHHHHHSCTTTTTSCSCCCS
T ss_pred hhccCCC---c--c----c-cCCeEEEcCccccCCCCCCCceEEEEe---cHH----HHHHHHHHhccCCcccccCccHH
Confidence 8875421 1 1 1 1245899999999653 1233489864 888 77777664432211 12111
Q ss_pred HHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 013839 314 GILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGS 358 (435)
Q Consensus 314 ~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 358 (435)
.+.++...+ +......++..+++..+.+.|+++|.
T Consensus 275 ~~~~~~~~l----------~~~~~~~~~~~~~a~~l~~~L~~~g~ 309 (431)
T 3ht4_A 275 SLQEMYQGF----------FLAPHVAGQALKGAIFTAAFLEKLGM 309 (431)
T ss_dssp CSHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhHh----------hhHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 122222222 33455667788888999999999885
No 210
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=99.87 E-value=4.9e-20 Score=179.68 Aligned_cols=227 Identities=11% Similarity=0.032 Sum_probs=163.6
Q ss_pred CCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEe---cCCchhHHHHHHHHHHHhCCCCEEEEcC-CCChhhHHH--
Q 013839 86 LESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQ---ALSGTGACRLFAEFQRRFHPESHIYFPD-PTWSNHHNI-- 159 (435)
Q Consensus 86 ~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~---t~gg~~a~~~~~~~~~~~~~gd~Vlv~~-p~y~~~~~~-- 159 (435)
+.|+. .|...|++.+++++. .. .. ++ +.+|++|+.++ +.++++|||+|++++ |.|..+...
T Consensus 68 y~y~~-~~~~~Le~~lA~l~g-~e-------~a--lv~p~~~sGt~Ai~~a--l~all~pGD~Vl~~~~~~y~~~~~~~g 134 (427)
T 3i16_A 68 YGYGD-IGRDSLDAVYARVFN-TE-------SA--LVRPHFVNGTHALGAA--LFGNLRPGNTMLSVCGEPYDTLHDVIG 134 (427)
T ss_dssp TCTTC-HHHHHHHHHHHHHHT-CS-------EE--EEETTCCSHHHHHHHH--HHHHCCTTCEEEESSSSCCGGGHHHHT
T ss_pred CCCCH-HHHHHHHHHHHHHhC-Cc-------ce--EEeCCCccHHHHHHHH--HHHHhCCCCEEEEeCCCccHHHHHHHh
Confidence 33444 467889999999883 32 11 24 78999998887 788899999999999 999988744
Q ss_pred ---------HhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCC----CCCCCCCCCCHHHHHHHHHHHHh
Q 013839 160 ---------WRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPS----AHNPTGVDPTEEQWREISYQFKV 226 (435)
Q Consensus 160 ---------~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~----p~NPtG~~~~~~~l~~i~~~~~~ 226 (435)
++..|++++.++. .+++.+|++++++++++. +++++|++++ |+||||. ..++++|+++|++
T Consensus 135 ~~~~~~~~~l~~~G~~~~~v~~--~~~g~~D~e~l~~~l~~~-~~tklV~i~~s~~~p~nptg~---i~dl~~i~~la~~ 208 (427)
T 3i16_A 135 ITENSNMGSLKEFGINYKQVDL--KEDGKPNLEEIEKVLKED-ESITLVHIQRSTGYGWRRALL---IEDIKSIVDCVKN 208 (427)
T ss_dssp CSCCCSSCCTGGGTCEEEECCC--CTTSSCCHHHHHHHHHTC-TTEEEEEEECSCCSSSSCCCC---HHHHHHHHHHHHH
T ss_pred ccccchHHHHHHcCCEEEEecC--ccCCCcCHHHHHHHhhCC-CCCEEEEEEcCCCCCCCCccc---HHHHHHHHHHHHH
Confidence 3567888888887 234679999999999742 3689999988 8888875 5789999999999
Q ss_pred --cCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccC-CcccEEEEEecChhHHHHHHHHHHHHh
Q 013839 227 --KGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYG-HRVGCLSILCVDSKQAAAIRSQIQQIA 303 (435)
Q Consensus 227 --~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G-~RvG~~~~~~~~~~~~~~~~~~l~~~~ 303 (435)
+|+++++|++|..+.+.. . +. . ...+++++|+||.+|.+| .+.||+++ +++ ++++++...
T Consensus 209 ~~~g~~livD~a~~~~~~~~---~--p~----~-~gaDiv~~S~sK~lgg~g~~~gG~i~~---~~~----li~~l~~~~ 271 (427)
T 3i16_A 209 IRKDIICFVDNCYGEFMDTK---E--PT----D-VGADLIAGSLIKNIGGGIAPTGGYLAG---TKD----CIEKTSYRL 271 (427)
T ss_dssp HCTTSEEEEECTTTTTSSSS---C--GG----G-GTCSEEEEETTSGGGTTTCCSCEEEEE---CHH----HHHHHHHHH
T ss_pred hCCCCEEEEECCCccccccC---C--cc----c-cCCeEEEecCcccCCCCCCceEEEEEE---CHH----HHHHHHHhc
Confidence 999999999998776431 1 11 1 134689999999998665 56788864 888 777777643
Q ss_pred hccccC---CChhH-HHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 013839 304 RAMYGS---PPVHG-ILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGS 358 (435)
Q Consensus 304 ~~~~~~---~~~~~-q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 358 (435)
.....+ .+.+. ...+...+ +.+...+++..+++..+.+.|+++|.
T Consensus 272 ~~~~~g~~~~~~~~~a~~~l~gl----------~~~~~r~~~~~~~a~~la~~L~~~g~ 320 (427)
T 3i16_A 272 TVPGIGGECGSTFGVVRSMYQGL----------FLAPHISMEALKGAILCSRIMELAGF 320 (427)
T ss_dssp SCTTTGGGCCCCTTCHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccCccCccCCccHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 221111 11121 22222222 33456778888899999999999984
No 211
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Probab=99.78 E-value=1.2e-23 Score=207.37 Aligned_cols=333 Identities=12% Similarity=0.052 Sum_probs=207.3
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCc
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSG 126 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg 126 (435)
.++...|||..|.....-|. .++.+++++.+++..+....| +.....+|.+.+++++.+ .+++. ++++|
T Consensus 97 ~dG~~yiD~~~~~~~~~lGh-~~p~V~~Av~~q~~~~~~~~~-~~~~~~~Lae~L~~~~p~-------~~~v~--~~nSG 165 (465)
T 2yky_A 97 VDGHAYVNFLGEYTAGLFGH-SHPVIRAAVERALAVGLNLST-QTENEALFAEAVCDRFPS-------IDLVR--FTNSG 165 (465)
Confidence 35678999988874222221 233444444455443322334 333455777777776621 34666 89999
Q ss_pred hhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHh----hCCC--CeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEE
Q 013839 127 TGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWR----DAQI--PERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLL 200 (435)
Q Consensus 127 ~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~----~~g~--~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~ 200 (435)
++|+..+..+......+++|++.+++|.++...+. ..|. .++.++. .|++.|++.+++.++++++|+
T Consensus 166 seA~~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~sg~~~~g~~~~~~~~~~-------~d~~~l~~~l~~~~~~~aavi 238 (465)
T 2yky_A 166 TEANLMALATATAITGRKTVLAFDGGYHGGLLNFASGHAPTNAPYHVVLGVY-------NDVEGTADLLKRHGHDCAAIL 238 (465)
Confidence 99999885433223455999999999987654332 1233 2222222 278889888875434677877
Q ss_pred eCCCCCCCCCCC-CHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcc
Q 013839 201 HPSAHNPTGVDP-TEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRV 279 (435)
Q Consensus 201 ~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~Rv 279 (435)
+...+|+||... +++.+++|.++|++||+++|+||+|. +..+. ......+ +...-+.||||.+| .|+|+
T Consensus 239 ~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~r~g~----~~a~~~~----gv~pDi~t~sK~lg-~G~pi 308 (465)
T 2yky_A 239 VEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-SRLSG----GGAQEML----GISADLTTLGKYIG-GGMSF 308 (465)
Confidence 766567799655 68889999999999999999999998 64321 1111111 11122458999999 49999
Q ss_pred cEEEEEecChhHHHHHHHHHHH-----HhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013839 280 GCLSILCVDSKQAAAIRSQIQQ-----IARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLE 354 (435)
Q Consensus 280 G~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~ 354 (435)
||+++ +++ +++.+.. .....+.+.+++++.++.+.|+.-. + +...+++.++.+++.+.|+
T Consensus 309 G~v~~---~~~----i~~~l~~~~~g~~~~~~T~~~npla~aAa~aaL~~l~------~--~~~~~~~~~~~~~l~~~L~ 373 (465)
T 2yky_A 309 GAFGG---RRD----LMERFDPARDGAFAHAGTFNNNILTMSAGHAALTQIY------T--RQAASDLSASGDRFRANLN 373 (465)
Confidence 99964 777 7776665 1233456777888888777775321 1 2345556666666666665
Q ss_pred hhCCCCCccccccCcceeEecCCC------------------HHHHHHHhhhccEEEeCCC--cEEeccCCCCcHHHHHH
Q 013839 355 KLGSSLNWEHITNQLGMFCFSGLT------------------PYQVDRLAKEFHIYMTQDG--RISMAGVTTGNVNYLAN 414 (435)
Q Consensus 355 ~~~~~~~~~~~~~~~g~~~~~~~~------------------~~~~~~ll~~~gI~i~pgg--Ris~~~~~~e~i~~~~~ 414 (435)
++.....+....+..|.++|+.+. .+++..++ ++||.+.|++ -+++. .++++++++++
T Consensus 374 ~~~~~~~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll-~~GV~v~p~~~~~~s~~-~t~edid~~l~ 451 (465)
T 2yky_A 374 RIAVENQAPLQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFFFHML-RKGIYLAPRGMYALSLE-IADAGRDAFAE 451 (465)
Confidence 542100111112334555555331 12335554 6899999876 35654 38999999999
Q ss_pred HHHHHHHhhh
Q 013839 415 AIHEVTRSEQ 424 (435)
Q Consensus 415 ~l~~~l~~~~ 424 (435)
+|.++++++.
T Consensus 452 ~l~~~l~~~~ 461 (465)
T 2yky_A 452 ALADFIGEQR 461 (465)
Confidence 9999987653
No 212
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.86 E-value=4.9e-20 Score=180.85 Aligned_cols=157 Identities=14% Similarity=0.024 Sum_probs=125.1
Q ss_pred ccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHH----hhCCCCee
Q 013839 93 VSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIW----RDAQIPER 168 (435)
Q Consensus 93 g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~ 168 (435)
...++++.+++++... +.+ ++.+|++|+.++ +..++.+||+|+++.++|..+...+ +..|++++
T Consensus 59 ~~~~l~~~la~~~g~~-------~~v---~~~sGt~A~~~~--l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~ 126 (421)
T 2ctz_A 59 TVDVLEKRLAALEGGK-------AAL---ATASGHAAQFLA--LTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVR 126 (421)
T ss_dssp HHHHHHHHHHHHHTCS-------EEE---EESSHHHHHHHH--HHHHCCTTCEEEECSCCCHHHHHHHHTHHHHTTCEEE
T ss_pred HHHHHHHHHHHHhCCC-------ceE---EecCHHHHHHHH--HHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEE
Confidence 3578999999998332 123 467779999888 6666889999999999998877654 67898888
Q ss_pred ee-eecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcc
Q 013839 169 TY-HYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDK 247 (435)
Q Consensus 169 ~v-~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~ 247 (435)
.+ +. .|+++++++++ +++++|++++|+||||.+.+ +++|.++|++||+++|+|++|..+.+..
T Consensus 127 ~~~~~-------~d~~~l~~~i~---~~~~~v~~~~~~n~~G~~~~---l~~i~~~a~~~g~~livD~~~~~~g~~~--- 190 (421)
T 2ctz_A 127 FTSRE-------ERPEEFLALTD---EKTRAWWVESIGNPALNIPD---LEALAQAAREKGVALIVDNTFGMGGYLL--- 190 (421)
T ss_dssp ECCTT-------CCHHHHHHHCC---TTEEEEEEESSCTTTCCCCC---HHHHHHHHHHHTCEEEEECGGGGGGTSC---
T ss_pred EECCC-------CCHHHHHHhhc---cCCeEEEEECCCCCCCcccC---HHHHHHHHHHcCCEEEEECCcccccccC---
Confidence 88 64 17899999997 67899999999999999988 6799999999999999999983343321
Q ss_pred cHHHHHHhhhcCCeEEEEecccccccccCCcccEEEE
Q 013839 248 DAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSI 284 (435)
Q Consensus 248 ~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~ 284 (435)
. ++ . ...++++.|+||.++.+|.|+|++++
T Consensus 191 ~--~~----~-~~~Di~~~s~~K~l~~~g~~~G~~~~ 220 (421)
T 2ctz_A 191 R--PL----A-WGAALVTHSLTKWVGGHGAVIAGAIV 220 (421)
T ss_dssp C--GG----G-GTCSEEEEETTTTTTCSSCCCCEEEE
T ss_pred C--cc----c-cCCeEEEECCcccccCCCCcEEEEEE
Confidence 1 11 1 13468899999999989999999974
No 213
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=99.86 E-value=5.6e-20 Score=179.30 Aligned_cols=226 Identities=12% Similarity=0.029 Sum_probs=162.2
Q ss_pred CCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEe---cCCchhHHHHHHHHHHHhCCCCEEEEcC-CCChhhHHH--
Q 013839 86 LESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQ---ALSGTGACRLFAEFQRRFHPESHIYFPD-PTWSNHHNI-- 159 (435)
Q Consensus 86 ~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~---t~gg~~a~~~~~~~~~~~~~gd~Vlv~~-p~y~~~~~~-- 159 (435)
+.|+. .|...|++.+++++ +.. ... + +.+|++|+.++ +.++++|||+|++++ |.|..+...
T Consensus 69 y~Y~~-~g~~~Le~~lA~l~-g~e-------~al--v~p~~~sGt~A~~~a--l~all~pGD~Vl~~~~~~y~~~~~~~g 135 (427)
T 3hvy_A 69 YGYND-IGRDSLDRVYANIF-NTE-------SAF--VRPHFVNGTHAIGAA--LFGNLRPNDTMMSICGMPYDTLHDIIG 135 (427)
T ss_dssp TCTTC-HHHHHHHHHHHHHH-TCS-------EEE--EETTCCSHHHHHHHH--HHHTCCTTCEEEECSSSCCGGGHHHHT
T ss_pred CCCCc-hhHHHHHHHHHHHh-CCC-------ceE--EeCCCCcHHHHHHHH--HHHhcCCCCEEEEeCCCCchhHHHHhc
Confidence 44544 36788999999987 331 222 4 78999998887 788899999999999 999888743
Q ss_pred ---------HhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCC----CCCCCCCCCCHHHHHHHHHHHHh
Q 013839 160 ---------WRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPS----AHNPTGVDPTEEQWREISYQFKV 226 (435)
Q Consensus 160 ---------~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~----p~NPtG~~~~~~~l~~i~~~~~~ 226 (435)
++..|++++.++. +++.+|++++++++++. +++++|++++ |+||||. ..++++|+++|++
T Consensus 136 ~~~~~~~~~l~~~G~~~~~v~~---~~~~~d~e~l~~~i~~~-~~tklV~i~~s~gyp~nptg~---v~dl~~i~~ia~~ 208 (427)
T 3hvy_A 136 MDDSKKVGSLREYGVKYKMVDL---KDGKVDINTVKEELKKD-DSIKLIHIQRSTGYGWRKSLR---IAEIAEIIKSIRE 208 (427)
T ss_dssp CCTTCCSCCTGGGTCEEEECCC---BTTBCCHHHHHHHHHHC-TTEEEEEEESSCCSSSSCCCC---HHHHHHHHHHHHH
T ss_pred cccchhhhHHHHcCCEEEEecC---CCCCcCHHHHHHHhhCC-CCCEEEEEECCCCCCCCcccc---HHHHHHHHHHHHH
Confidence 4567888888876 35689999999999742 3689999988 8888875 5789999999999
Q ss_pred --cCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccC-CcccEEEEEecChhHHHHHHHHHHHHh
Q 013839 227 --KGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYG-HRVGCLSILCVDSKQAAAIRSQIQQIA 303 (435)
Q Consensus 227 --~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G-~RvG~~~~~~~~~~~~~~~~~~l~~~~ 303 (435)
+|+++|+|++|..+.+... +. . ...+++++|+||.+|.+| .+.||+++ +++ +++.++...
T Consensus 209 ~~~g~~livD~a~~~~~~~~~-----p~----~-~gaDiv~~S~sK~lgg~g~~~GG~i~~---~~~----li~~l~~~~ 271 (427)
T 3hvy_A 209 VNENVIVFVDNCYGEFVEEKE-----PT----D-VGADIIAGSLIKNIGGGIATTGGYIAG---KEE----YVTQATFRV 271 (427)
T ss_dssp HCSSSEEEEECTTCTTTSSSC-----GG----G-GTCSEEEEETTSGGGTTTCCSCEEEEE---CHH----HHHHHHHHH
T ss_pred hCCCCEEEEECCccccccCCC-----Cc----c-cCCeEEEECCcccccccccceEEEEEE---CHH----HHHHHHHHh
Confidence 8999999999987764321 11 1 134689999999998555 44577753 888 777777643
Q ss_pred hcccc----CCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 013839 304 RAMYG----SPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGS 358 (435)
Q Consensus 304 ~~~~~----~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 358 (435)
..... +++......+...+ ......+++..+++..+.+.|+++|.
T Consensus 272 ~~~~~g~~~~~~~~~a~~~~~gl----------~~~~~r~~~~~~~a~~la~~L~~~g~ 320 (427)
T 3hvy_A 272 TVPGIGGECGSTFGVMRSLYEGL----------FMAPHVTIEAVKGAVFCARIMELAGF 320 (427)
T ss_dssp SCTTTGGGCCCCTTCHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hcCCcccccCCCHHHHHHHHHhH----------hHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 22111 12111122222222 33456677888888999999999884
No 214
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Probab=99.86 E-value=2.1e-20 Score=187.85 Aligned_cols=317 Identities=12% Similarity=0.083 Sum_probs=202.5
Q ss_pred hHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhH---cCCCCccccCCCeeeEecCCchhHHHHHHHHHHHh-------
Q 013839 71 QCVREAEAKIAGSEFLESISASVSTKMVEESVKLV---YGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRF------- 140 (435)
Q Consensus 71 ~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l---~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~------- 140 (435)
....+++....+.....|....+..++.+++.+++ .+... .++++. ++.||++|+.++. ....
T Consensus 107 ~~~~~~l~~~~n~~~~~~~~~~~~~~le~~~~~~la~~~g~~~---~~~~~~--~t~ggtea~~~al--~~~~~~~~~~~ 179 (504)
T 2okj_A 107 GLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKMREIVGWSS---KDGDGI--FSPGGAISNMYSI--MAARYKYFPEV 179 (504)
T ss_dssp HHHHHHHHHHHCCBSSCTTTCHHHHHHHHHHHHHHHHHHTCCS---SSCEEE--EESSHHHHHHHHH--HHHHHHHCTTH
T ss_pred HHHHHHHHHhhccCCCchhhChHHHHHHHHHHHHHHHHhCCCC---CCCCEE--EeCCcHHHHHHHH--HHHHHHHhhHH
Confidence 33344455443333445766666566666664444 23321 134566 8999999998884 3322
Q ss_pred -CCC-----C-EEEEcCCCChhhHHHHhhCCC---CeeeeeecCCCCCCcChHhHHHHhhcC---CCCcEEEEeCCCCCC
Q 013839 141 -HPE-----S-HIYFPDPTWSNHHNIWRDAQI---PERTYHYYDPDSKSLDFAALMDDIKNA---PDSSFFLLHPSAHNP 207 (435)
Q Consensus 141 -~~g-----d-~Vlv~~p~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~e~l~~~i~~~---~~~~~~v~~~~p~NP 207 (435)
.+| + +|+++.++|..+...++..|. +++.+|. ++++.+|+++|++++.+. ..++++|++++|+||
T Consensus 180 ~~~G~~~~~~~~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~--~~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~ 257 (504)
T 2okj_A 180 KTKGMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKC--NERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTV 257 (504)
T ss_dssp HHHCGGGSCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECB--CTTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSS
T ss_pred hhcCccccCCeEEEECCcchHHHHHHHHHcCCCcccEEEEec--CCCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCC
Confidence 256 6 789999999999888888876 7888887 346899999999999742 125889999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEec
Q 013839 208 TGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCV 287 (435)
Q Consensus 208 tG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~ 287 (435)
||.+.+ +++|.++|++||+++++|++|..+...... .... +.+.....+++.+++|.++.| .++|++++ .
T Consensus 258 tG~i~~---l~~I~~la~~~g~~lhvD~a~~~~~~~~~~-~~~~---~~g~~~~D~i~~~~hK~~~~p-~~~g~l~~--~ 327 (504)
T 2okj_A 258 YGAFDP---IQEIADICEKYNLWLHVDAAWGGGLLMSRK-HRHK---LNGIERANSVTWNPHKMMGVL-LQCSAILV--K 327 (504)
T ss_dssp SCCBCC---HHHHHHHHHHHTCEEEEEETTGGGGGGCTT-TGGG---GTTGGGCSEEEECTTSTTCCC-SCCEEEEE--S
T ss_pred CCCcCC---HHHHHHHHHHcCCEEEEehhhhhHHHhCHh-hHhh---cCCcccCCEEEECchhhcCCC-cceEEEEE--E
Confidence 998754 669999999999999999999877643110 0011 111113346788999999855 68999963 3
Q ss_pred ChhHHHHHHHHHHHH-hhcccc--------------------CCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHH
Q 013839 288 DSKQAAAIRSQIQQI-ARAMYG--------------------SPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKR 346 (435)
Q Consensus 288 ~~~~~~~~~~~l~~~-~~~~~~--------------------~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~ 346 (435)
+++ +....... ..+... ....+.+.++..++.. +.+++..++..+++
T Consensus 328 ~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~rr~~~l~~~a~l~~lg~--------~g~~~~~~~~~~~a 395 (504)
T 2okj_A 328 EKG----ILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGT--------VGFENQINKCLELA 395 (504)
T ss_dssp STT----HHHHHHCCCCSSSCCSCCSSCGGGCCGGGSSCSSCBCCHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
T ss_pred CHH----HHHHHhcCCCccccCCcccccCcCCcccCCCCCCCCccHHHHHHHHHHhhH--------HHHHHHHHHHHHHH
Confidence 555 43322211 111100 0123444444444431 44667778888899
Q ss_pred HHHHHHHHhhCCCCCccccc---cCcceeEecCCC-------------------H-HHHHHHhhhccE-EEeC----C--
Q 013839 347 TTLRQNLEKLGSSLNWEHIT---NQLGMFCFSGLT-------------------P-YQVDRLAKEFHI-YMTQ----D-- 396 (435)
Q Consensus 347 ~~l~~~l~~~~~~~~~~~~~---~~~g~~~~~~~~-------------------~-~~~~~ll~~~gI-~i~p----g-- 396 (435)
+++.+.|++++. +.+.. +..+++.|.... . +..+.++ +.|+ .+.+ +
T Consensus 396 ~~l~~~L~~~~~---~~~~~~~~p~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~-~~G~~~~~~~~~~~~~ 471 (504)
T 2okj_A 396 EYLYAKIKNREE---FEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMM-ESGTTMVGYQPQGDKA 471 (504)
T ss_dssp HHHHHHHTTCTT---EEESSSSCCSSSCEEEEECCGGGSSCCCCHHHHHHHTTHHHHHHHHHH-HHTSCEEEEEEETTEE
T ss_pred HHHHHHHhcCCC---EEEEecCCCCeEEEEEEEeCccccccccchhhHHHHHHHHHHHHHHHH-hCCcEEEEeeEECCce
Confidence 999999987632 44443 666766664211 1 2334554 5674 3331 2
Q ss_pred C--cEEecc--CCCCcHHHHHHHHHHHHHh
Q 013839 397 G--RISMAG--VTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 397 g--Ris~~~--~~~e~i~~~~~~l~~~l~~ 422 (435)
+ |+++++ .+++++++++++|++++++
T Consensus 472 ~~lRis~~~~~~t~edi~~~~~~l~~~~~~ 501 (504)
T 2okj_A 472 NFFRMVISNPAATQSDIDFLIEEIERLGQD 501 (504)
T ss_dssp EEEEECCCCTTCCHHHHHHHHHHHHHHHTC
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 2 898862 3788899999999887754
No 215
>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A
Probab=99.86 E-value=1.7e-20 Score=185.85 Aligned_cols=337 Identities=13% Similarity=0.122 Sum_probs=194.9
Q ss_pred hhhHHHHHhcCCCCCeeeeecceecCCCCCcccchHHHHHHHH-hcCCCCCCCCCC---cc---cHHHH----HHHHHhH
Q 013839 37 INGVTEAFLADPSPYKINLGVGAYRDDKGRPVVLQCVREAEAK-IAGSEFLESISA---SV---STKMV----EESVKLV 105 (435)
Q Consensus 37 ~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Y~~~---~g---~~~lr----~~ia~~l 105 (435)
++..+++-...+ .+.|.|-.++ + + +++.+.+++.. +.+....+|+.. .| ..++. +.+++++
T Consensus 42 ~~~~~~~e~~rq-~~~i~lias~----n--~-~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~l~ 113 (490)
T 2a7v_A 42 MWELLQREKDRQ-CRGLELIASE----N--F-CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAF 113 (490)
T ss_dssp HHHHHHHHHHHH-HHSEECCTTC----C--C-CCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH-HcCceEECCC----C--C-CCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHHHHc
Confidence 555554433222 2667777655 2 2 34444545444 333222234321 12 23454 5555555
Q ss_pred cCCCCccccCCCe-eeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHH--------HHhhCCC--CeeeeeecC
Q 013839 106 YGKDSDVVKEGRS-AGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHN--------IWRDAQI--PERTYHYYD 174 (435)
Q Consensus 106 ~~~~~~~~~~~~v-~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~--------~~~~~g~--~~~~v~~~~ 174 (435)
+... ++. ..+++.+|++|+..+ +.++++|||+|+++++.|.++.. .+...|. +++.+++ +
T Consensus 114 -g~~~-----~~~~~~v~~~sGt~An~~a--l~al~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~v-d 184 (490)
T 2a7v_A 114 -DLDP-----AQWGVNVQPYSGSPANLAV--YTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKL-N 184 (490)
T ss_dssp -TCCT-----TTEEEECCCSSHHHHHHHH--HHHHCCSCEECCC-------------------------------CCB-C
T ss_pred -CCCc-----ccCceEEeCCchHHHHHHH--HHHHcCCCCEecccCccccccccchhhhcchhHHHcCCeEEEEeccc-c
Confidence 4431 122 112466899998888 88889999999999998865421 2234454 3445555 3
Q ss_pred CCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCC-CccCCCCcccHHHHH
Q 013839 175 PDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQ-GFASGDLDKDAQAIR 253 (435)
Q Consensus 175 ~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~-~~~~~~~~~~~~~~~ 253 (435)
++++.+|++++++.+.+ .++++++++.++||+. . ++++|.++|++||+++++|+++. ++...+... .++
T Consensus 185 ~~~~~iD~d~le~~l~~--~~~klIi~~~s~~~~~--~---dl~~i~~ia~~~g~~livD~Ah~~glv~~g~~~--~~~- 254 (490)
T 2a7v_A 185 PKTGLIDYNQLALTARL--FRPRLIIAGTSAYARL--I---DYARMREVCDEVKAHLLADMAHISGLVAAKVIP--SPF- 254 (490)
T ss_dssp TTTCSBCHHHHHHHHHH--HCCSEEEECCSSCCSC--C---CHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSC--CGG-
T ss_pred cccCCcCHHHHHHHHhh--cCCcEEEEcCCCCCCc--c---cHHHHHHHHHHcCCEEEEccccccccccCCcCC--CCC-
Confidence 45678999999999863 2467888888999863 2 47799999999999999999942 333222111 111
Q ss_pred HhhhcCCeEEEEecccccccccCCcccEEEEEecCh--------------hHHHHHHHHHHHHhhccc-cCCChhHHHHH
Q 013839 254 IFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDS--------------KQAAAIRSQIQQIARAMY-GSPPVHGILLV 318 (435)
Q Consensus 254 ~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~--------------~~~~~~~~~l~~~~~~~~-~~~~~~~q~~~ 318 (435)
+ ...+++.|+||++ .|+|.|++++ ++. + +.+.+++...... .+++.....++
T Consensus 255 ---~--~aDiv~~S~hK~l--~Gp~GG~i~~--~~~~~~~~~~~~~~~~~~----l~~~i~~~~~~g~qggp~~~~iaAl 321 (490)
T 2a7v_A 255 ---K--HADIVTTTTHKTL--RGARSGLIFY--RKGVKAVDPKTGREIPYT----FEDRINFAVFPSLQGGPHNHAIAAV 321 (490)
T ss_dssp ---G--TCSEEEEESSGGG--CSCSCEEEEE--ECSEEEEETTTEEEEECC----CHHHHHHHHTTTTCCSCCHHHHHHH
T ss_pred ---C--CCCEEEECCcccC--ccccchheee--ccchhcccccccchhhHH----HHHHHHHHhcccCCCCchHHHHHHH
Confidence 1 2358889999997 4678899864 232 3 4555655443322 33444444444
Q ss_pred HHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccc-cCcceeEecC-----CCHHHHHHHhhhccEE
Q 013839 319 ATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHIT-NQLGMFCFSG-----LTPYQVDRLAKEFHIY 392 (435)
Q Consensus 319 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~g~~~~~~-----~~~~~~~~ll~~~gI~ 392 (435)
+.++... ..+..+++.+++.++++++.+.|.+.|+ .+.. .....++|+. ++.+.+.+.|++.||.
T Consensus 322 a~Al~~~-----~~~~~~~~~~~~~~na~~L~~~L~~~G~----~v~~~~t~t~lv~vdl~~~g~~~~~~~~~L~~~GI~ 392 (490)
T 2a7v_A 322 AVALKQA-----CTPMFREYSLQVLKNARAMADALLERGY----SLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSIT 392 (490)
T ss_dssp HHHHHHH-----HSHHHHHHHHHHHHHHHHHHHHHHHTTC----EEGGGSCSSSEEEEECTTTTCCHHHHHHHHHHTTEE
T ss_pred HHHHHHH-----hhhhHHHHHHHHHHHHHHHHHHHHHcCc----EEecCCCCCeEEEEEeCCCCCCHHHHHHHHHhCCeE
Confidence 4444321 1133467788889999999999998874 4443 2234456663 3567777778889999
Q ss_pred EeC----C--------C-cEEec-----cCCCCcHHHHHHHHHHHHHh
Q 013839 393 MTQ----D--------G-RISMA-----GVTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 393 i~p----g--------g-Ris~~-----~~~~e~i~~~~~~l~~~l~~ 422 (435)
+.+ + | ||+.. +.++++++++.+.|.+++..
T Consensus 393 v~~~~~p~d~~p~~~~~iRig~~a~t~~g~~~~d~~~~~~~i~~~l~~ 440 (490)
T 2a7v_A 393 ANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNI 440 (490)
T ss_dssp CEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred EecCccCCCCCCCCCCceEecccccccCCCCHHHHHHHHHHHHHHHHh
Confidence 973 2 1 77542 24789999999999988863
No 216
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Probab=99.85 E-value=9.8e-21 Score=188.39 Aligned_cols=343 Identities=10% Similarity=-0.004 Sum_probs=208.0
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcC---CCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEec
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAG---SEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQA 123 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t 123 (435)
.++...||+..|.+...-| ..++++++++.+++.. .....|+. ....++++.+++.+..... ...+++. ++
T Consensus 60 ~dG~~ylD~~~g~~~~~lG-h~~p~v~~A~~~~~~~~~~~~~~~~~~-~~~~~l~~~la~~l~~~~~--~~~~~v~--f~ 133 (472)
T 1ohv_A 60 VDGNRMLDLYSQISSIPIG-YSHPALVKLVQQPQNVSTFINRPALGI-LPPENFVEKLRESLLSVAP--KGMSQLI--TM 133 (472)
T ss_dssp TTSCEEEESSHHHHTCSSC-BTCHHHHHHHHCGGGHHHHHCCCCTTT-SCBTTHHHHHHHTGGGGCC--TTCCEEE--EE
T ss_pred CCCCEEEECCCCHhhcccC-CCCHHHHHHHHHHHhhccccccccccc-ccHHHHHHHHHHHHHHhCC--CCcCEEE--Ee
Confidence 3568899999998622222 2244455544444321 11112333 3356899999996633211 1145777 99
Q ss_pred CCchhHHHHHHHHHHHh------C-----------------CC---CEEEEcCCCChhhHHHH-hhCCCCe---------
Q 013839 124 LSGTGACRLFAEFQRRF------H-----------------PE---SHIYFPDPTWSNHHNIW-RDAQIPE--------- 167 (435)
Q Consensus 124 ~gg~~a~~~~~~~~~~~------~-----------------~g---d~Vlv~~p~y~~~~~~~-~~~g~~~--------- 167 (435)
+||++|+..++.+.... . || ++|++.+++|.++.... ...|...
T Consensus 134 ~sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~ 213 (472)
T 1ohv_A 134 ACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSF 213 (472)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHHHHTTSCCC
T ss_pred CCchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCCccccccCCCCC
Confidence 99999999996443211 1 46 89999999998775433 3333211
Q ss_pred ----eeeeecC-C--CC--C-----CcChHhHHHHhhcCC---CCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhcCc
Q 013839 168 ----RTYHYYD-P--DS--K-----SLDFAALMDDIKNAP---DSSFFLLHPSAHNPTGV-DPTEEQWREISYQFKVKGH 229 (435)
Q Consensus 168 ----~~v~~~~-~--~~--~-----~~d~e~l~~~i~~~~---~~~~~v~~~~p~NPtG~-~~~~~~l~~i~~~~~~~~~ 229 (435)
+.+|... + .. + ..|+++|++.+++.. .++++|+++..+|+||. ..+++.+++|.++|++||+
T Consensus 214 ~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~ 293 (472)
T 1ohv_A 214 DWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGC 293 (472)
T ss_dssp CCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTC
T ss_pred CCcccCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCC
Confidence 1222100 0 00 0 126888998887421 16888888878889997 4689999999999999999
Q ss_pred eeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccC
Q 013839 230 FPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGS 309 (435)
Q Consensus 230 ~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 309 (435)
++|+||+|.+++..+. ......+ +.. ...-+.||||.+ +.| ||++ +++ +. .+.......+.+
T Consensus 294 lli~DEv~~g~g~~g~---~~~~~~~-gv~-~~~Di~t~sK~~-l~G---G~~~----~~~----~~-~~~~~~~~~T~~ 355 (472)
T 1ohv_A 294 AFLVDEVQTGGGSTGK---FWAHEHW-GLD-DPADVMTFSKKM-MTG---GFFH----KEE----FR-PNAPYRIFNTWL 355 (472)
T ss_dssp EEEEECTTTTTTTTSS---SSGGGGG-CCS-SCCSEEEECGGG-SSE---EEEE----CGG----GS-CSSSSSSCCSSS
T ss_pred EEEEeCcccCCCCCCC---chhcccc-CCC-CCCCEEEEcccc-ccC---CccC----chh----hc-ccccccccCccC
Confidence 9999999987765431 1122111 110 001234899995 345 6763 555 42 122222244556
Q ss_pred CChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--CCCCCccccccCcceeEecCCC-----HHHH
Q 013839 310 PPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKL--GSSLNWEHITNQLGMFCFSGLT-----PYQV 382 (435)
Q Consensus 310 ~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~g~~~~~~~~-----~~~~ 382 (435)
.+.+++.++.++|+.-. + ....++++++++++.+.|+++ +.+..+....+.+. +.++.+. .+++
T Consensus 356 ~~~~~~aaa~aal~~~~------~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~~~~g~-~~~~~~~~~~~~~~~~ 426 (472)
T 1ohv_A 356 GDPSKNLLLAEVINIIK------R--EDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGT-FCSFDTPDESIRNKLI 426 (472)
T ss_dssp SCHHHHHHHHHHHHHHH------H--TTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEEETT-EEEEECSSHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHH------h--CCHHHHHHHHHHHHHHHHHHHHhhCCCcEEeecCCce-EEEEEeCChhHHHHHH
Confidence 77888888877774211 1 235677777888888888765 22211222445544 4444442 2344
Q ss_pred HHHhhhccEEEeCCC----cEEec-cCCCCcHHHHHHHHHHHHHhh
Q 013839 383 DRLAKEFHIYMTQDG----RISMA-GVTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 383 ~~ll~~~gI~i~pgg----Ris~~-~~~~e~i~~~~~~l~~~l~~~ 423 (435)
..++ ++||.+.|+| ||+++ ..+++++++++++|+++++++
T Consensus 427 ~~l~-~~Gv~~~~~g~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~~ 471 (472)
T 1ohv_A 427 SIAR-NKGVMLGGCGDKSIRFRPTLVFRDHHAHLFLNIFSDILADF 471 (472)
T ss_dssp HHHH-HTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred HHHH-HCCeEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence 6665 5899999874 88654 238899999999999988653
No 217
>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*
Probab=99.85 E-value=4.5e-20 Score=185.32 Aligned_cols=322 Identities=12% Similarity=0.072 Sum_probs=204.5
Q ss_pred chHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhC--------
Q 013839 70 LQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFH-------- 141 (435)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~-------- 141 (435)
+..+.+++....+.....|....+..++.+++++++....+.+..++.++ ++.||++|+..+. .+...
T Consensus 109 ~~~~~e~l~~~~~~~~~~~~~~p~~~~le~~~~~~l~~~~g~~~~~~~~~--~t~ggt~a~~~al--~~a~~~~~~~~~~ 184 (511)
T 3vp6_A 109 IGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGI--FSPGGAISNMYSI--MAARYKYFPEVKT 184 (511)
T ss_dssp HHHHHHHHHHHHCCCSSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEE--EESSHHHHHHHHH--HHHHHHHCTHHHH
T ss_pred HHHHHHHHHHHhccCCCCcccCchHHHHHHHHHHHHHHHhCCCCCCCceE--ECCchHHHHHHHH--HHHHHHhhhhhhh
Confidence 33444444444333356788888889999999888732211111123555 8999999987773 33322
Q ss_pred ------CCCEEEEcCCCChhhHHHHhhCCC---CeeeeeecCCCCCCcChHhHHHHhhcC---CCCcEEEEeCCCCCCCC
Q 013839 142 ------PESHIYFPDPTWSNHHNIWRDAQI---PERTYHYYDPDSKSLDFAALMDDIKNA---PDSSFFLLHPSAHNPTG 209 (435)
Q Consensus 142 ------~gd~Vlv~~p~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~e~l~~~i~~~---~~~~~~v~~~~p~NPtG 209 (435)
+++.|+++.+.|..+...++..|+ +++.++. ++++.+|+++|++++.+. ...++++++++++||||
T Consensus 185 ~G~~~~~~~~v~~s~~~H~s~~~~~~~~g~g~~~~~~v~~--d~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G 262 (511)
T 3vp6_A 185 KGMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKC--NERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYG 262 (511)
T ss_dssp HCGGGSCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECB--CTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSC
T ss_pred cCcccCCCeEEEECCCchHHHHHHHHHcCCCCCcEEEeec--CCCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCc
Confidence 567999999999999999999998 7888887 345899999999999742 12278999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecCh
Q 013839 210 VDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDS 289 (435)
Q Consensus 210 ~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~ 289 (435)
.+ +++++|+++|++||+++++|++|........ .. .. .+.+...-++++.+.+|.++.| ..+|+++ .+++
T Consensus 263 ~v---d~l~~I~~ia~~~~~~lhvD~a~~~~~~~~~--~~-~~-~~~g~~~aDsv~~~~hK~l~~p-~g~g~l~--~~~~ 332 (511)
T 3vp6_A 263 AF---DPIQEIADICEKYNLWLHVDAAWGGGLLMSR--KH-RH-KLNGIERANSVTWNPHKMMGVL-LQCSAIL--VKEK 332 (511)
T ss_dssp CB---CCHHHHHHHHHHHTCEEEEEETTGGGGGGCT--TT-GG-GGTTGGGCSEEEECTTSTTCCC-SCCEEEE--ESST
T ss_pred cc---ccHHHHHHHHHHcCCEEEEEccchhhHhhCh--hh-hh-hccCCccCCEEEECcccccCCC-cCeEEEE--EeCH
Confidence 97 4577999999999999999999876543210 00 00 0111123356678999998755 6678886 3465
Q ss_pred hHHHHHHHHHHHHhh-ccc-----------------c---CCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHH
Q 013839 290 KQAAAIRSQIQQIAR-AMY-----------------G---SPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTT 348 (435)
Q Consensus 290 ~~~~~~~~~l~~~~~-~~~-----------------~---~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~ 348 (435)
+ +......... +.. . ....+...++...+. .+.+++..++..++.++
T Consensus 333 ~----~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~r~~~al~~~~al~~~g--------~~gl~~~~~~~~~~a~~ 400 (511)
T 3vp6_A 333 G----ILQGCNQMHASYLFQQDKHYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKG--------TVGFENQINKCLELAEY 400 (511)
T ss_dssp T----HHHHHHCCCCTTTCCSSCSSCGGGCCGGGSSCSSCCCCHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
T ss_pred H----HHHHHhccCCccccCcccccccccCccCCCCCCCCchHHHHHHHHHHHHh--------HHHHHHHHHHHHHHHHH
Confidence 5 4333321110 100 0 012232333333332 15577888889999999
Q ss_pred HHHHHHhhCCCCCccccc---cCcceeEec----CCC---------------HHHH-HHHhhhccEEEeC-----CC---
Q 013839 349 LRQNLEKLGSSLNWEHIT---NQLGMFCFS----GLT---------------PYQV-DRLAKEFHIYMTQ-----DG--- 397 (435)
Q Consensus 349 l~~~l~~~~~~~~~~~~~---~~~g~~~~~----~~~---------------~~~~-~~ll~~~gI~i~p-----gg--- 397 (435)
+.+.|++.+. +.... +..+.+.|. +++ ...+ +.| .+.|+.+.. ++
T Consensus 401 l~~~L~~~pg---~~l~~~~~p~~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L-~~~G~~~~~~~~~~~~~~~ 476 (511)
T 3vp6_A 401 LYAKIKNREE---FEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALM-MESGTTMVGYQPQGDKANF 476 (511)
T ss_dssp HHHHHHSCTT---EEESSSSCCSSSCEEEEECCGGGSSCCCCHHHHHHHHHHHHHHHHHH-HHHTSCEEEEEEETTEEEE
T ss_pred HHHHHhcCCC---EEEEecCCCCeEEEEEEEeCccccccccchhHHHHHHHHHHHHHHHH-HhcCCEEEEEEEeCCceEE
Confidence 9999987632 44443 555555542 110 1134 444 456754432 22
Q ss_pred -cEEecc--CCCCcHHHHHHHHHHHHHhh
Q 013839 398 -RISMAG--VTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 398 -Ris~~~--~~~e~i~~~~~~l~~~l~~~ 423 (435)
|+++++ .+.++++.++++|+++-+.+
T Consensus 477 lRi~~~~~~~t~~di~~ll~~i~~~~~~~ 505 (511)
T 3vp6_A 477 FRMVISNPAATQSDIDFLIEEIERLGQDL 505 (511)
T ss_dssp EEECCCCTTCCHHHHHHHHHHHHHHHC--
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence 888743 36788999988888765443
No 218
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=99.84 E-value=3e-19 Score=173.54 Aligned_cols=272 Identities=12% Similarity=0.057 Sum_probs=170.8
Q ss_pred cchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHH-------hC
Q 013839 69 VLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRR-------FH 141 (435)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~-------~~ 141 (435)
+++.++.+...+.. ..|.+..+..++++++++++... +.+ ++.+|++|+.++ +.++ +.
T Consensus 14 ~~~~~~a~~~~~~~---~~~~~~~~~~~l~~~la~~~~~~--------~~i--~~~sGt~a~~~a--l~~~~~~~~~~~~ 78 (390)
T 3b8x_A 14 DDLEYKAIQSVLDS---KMFTMGEYVKQYETQFAKTFGSK--------YAV--MVSSGSTANLLM--IAALFFTKKPRLK 78 (390)
T ss_dssp CHHHHHHHHHHHHH---TCCSSCHHHHHHHHHHHHHHTCS--------EEE--EESCHHHHHHHH--HHHTTSSSSCSCC
T ss_pred CHHHHHHHHHHHHc---CCCCCChHHHHHHHHHHHHHCCC--------cEE--EECCHHHHHHHH--HHHHHhhhhcCCC
Confidence 33444444444432 23566788899999999998322 233 688889998888 6665 67
Q ss_pred CCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHH
Q 013839 142 PESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREIS 221 (435)
Q Consensus 142 ~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~ 221 (435)
+||+|+++.|+|..+...++..|++++.++. +++++.+|+++|+++++ ++++++++++ ++|.. .++++|.
T Consensus 79 ~g~~Vi~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~d~~~l~~~i~---~~~~~v~~~~---~~g~~---~~~~~i~ 148 (390)
T 3b8x_A 79 KGDEIIVPAVSWSTTYYPLQQYGLRVKFVDI-DINTLNIDIESLKEAVT---DSTKAILTVN---LLGNP---NNFDEIN 148 (390)
T ss_dssp TTCEEEEESSSCHHHHHHHHHTTCEEEEECB-CTTTCSBCHHHHHHHCC---TTEEEEEEEC---GGGCC---CCHHHHH
T ss_pred CcCEEEECCCCcHHHHHHHHHcCCEEEEEec-CccccCcCHHHHHHHhC---cCCeEEEEEC---CccCh---hhHHHHH
Confidence 8999999999999999999999999999988 34458899999999997 5788888753 44443 4677999
Q ss_pred HHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEe--cccccccccCCcccEEEEEecChhHHHHHHHHH
Q 013839 222 YQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQ--SYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQI 299 (435)
Q Consensus 222 ~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l 299 (435)
++|++||+++|+|++|......+. ..+ +. ..++... ..+|.++ +| +.|+++ +++++ +.+.+
T Consensus 149 ~l~~~~~~~li~D~a~~~g~~~~~-------~~~-g~-~~~~~~~s~~~~k~~~-~g-~gG~~~--~~~~~----l~~~~ 211 (390)
T 3b8x_A 149 KIIGGRDIILLEDNCESMGATFNN-------KCA-GT-FGLMGTFSSFYSNHIA-TM-EGGCIV--TDDEE----IYHIL 211 (390)
T ss_dssp HHHTTSCCEEEEECTTCTTCEETT-------EET-TS-SSSEEEEECCTTSSSC-SS-SCEEEE--ESCHH----HHHHH
T ss_pred HHHHHcCCEEEEECcCcccCEECC-------ccc-cc-ccceEEEEccCCCCCc-cC-CceEEE--eCCHH----HHHHH
Confidence 999999999999999874321111 011 11 1122222 2345553 33 347885 43445 55545
Q ss_pred HHHhhccc---------------------------cC----CChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHH
Q 013839 300 QQIARAMY---------------------------GS----PPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTT 348 (435)
Q Consensus 300 ~~~~~~~~---------------------------~~----~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~ 348 (435)
+......+ .+ .+.+...++...+ +.+++..++.++++++
T Consensus 212 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l----------~~l~~~~~~~~~~~~~ 281 (390)
T 3b8x_A 212 LCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQL----------KKLPRFISVRRKNAEY 281 (390)
T ss_dssp HHHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHHH----------HHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCccccccccccccccccccccccceeccccccCcCHHHHHHHHHHH----------HHHHHHHHHHHHHHHH
Confidence 44321110 01 3333322222222 3455677778888888
Q ss_pred HHHHHHhhCCCCCcccccc--Cccee-Eec------CCCHHHHHHHhhhccEEEeC
Q 013839 349 LRQNLEKLGSSLNWEHITN--QLGMF-CFS------GLTPYQVDRLAKEFHIYMTQ 395 (435)
Q Consensus 349 l~~~l~~~~~~~~~~~~~~--~~g~~-~~~------~~~~~~~~~ll~~~gI~i~p 395 (435)
+.+.|++++. +....+ ..+++ .++ +.+.+.+.+.|+++||.+.+
T Consensus 282 l~~~L~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~L~~~gI~v~~ 334 (390)
T 3b8x_A 282 FLDKFKDHPY---LDVQQETGESSWFGFSFIIKKDSGVIRKQLVENLNSAGIECRP 334 (390)
T ss_dssp HHHHHTTCSS---EEECCCCSBCCCCEEEEEECTTSCCCHHHHHHHHHHTTBCCBC
T ss_pred HHHHhcCCCC---cccCCCCCCcccEEEEEEecCcCcccHHHHHHHHHHCCCCeee
Confidence 9999887631 333322 23332 222 24566665555678998875
No 219
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}
Probab=99.84 E-value=1.3e-19 Score=181.76 Aligned_cols=318 Identities=13% Similarity=0.056 Sum_probs=197.3
Q ss_pred cchHHHHHHHHhcCCCCCCCCCCcccHHHHHH----HHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHH--Hh--
Q 013839 69 VLQCVREAEAKIAGSEFLESISASVSTKMVEE----SVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQR--RF-- 140 (435)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~----ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~--~~-- 140 (435)
++.++.++.....+.....|....+..++.+. +++++ +... .++++ +|+||++|+.+++.... .+
T Consensus 113 ~~~v~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~~~-g~~~----~~~~~--~t~ggt~a~~~al~~ar~~~~~~ 185 (497)
T 2qma_A 113 MPAVAAEAMIAALNQSMDSWDQASSATYVEQKVVNWLCDKY-DLSE----KADGI--FTSGGTQSNQMGLMLARDWIADK 185 (497)
T ss_dssp HHHHHHHHHHHHHCCCTTCGGGCHHHHHHHHHHHHHHHHHT-TCCT----TCEEE--EESSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccccchhhChHHHHHHHHHHHHHHHHh-CCCC----CCCeE--EcCCchHHHHHHHHHHHHHHHHh
Confidence 33444444444433334446555555666666 44444 3221 24666 89999999988853211 12
Q ss_pred -------CC------CC-EEEEcCCCChhhHHHHhhCCC---CeeeeeecCCCCCCcChHhHHHHhhcC---CCCcEEEE
Q 013839 141 -------HP------ES-HIYFPDPTWSNHHNIWRDAQI---PERTYHYYDPDSKSLDFAALMDDIKNA---PDSSFFLL 200 (435)
Q Consensus 141 -------~~------gd-~Vlv~~p~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~e~l~~~i~~~---~~~~~~v~ 200 (435)
.+ || .|+++.+.|..+...++..|. +++.+|. ++++.+|+++|++++.+. ..++.+++
T Consensus 186 ~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~--~~~~~~d~~~L~~~i~~~~~~~~~~~~vv 263 (497)
T 2qma_A 186 LSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWMGLGEKAVMTVDA--NADGTMDITKLDEVIAQAKAEGLIPFAIV 263 (497)
T ss_dssp HHCCCHHHHCSCGGGGGEEEEEETTSCTHHHHHHHHTTSCGGGEEEECB--CTTSSBCGGGHHHHHHHHHHTTCEEEEEE
T ss_pred hcccchhhcccccccCCeEEEECCCchHHHHHHHHHcCCCcccEEEEec--CCCCcCCHHHHHHHHHHHHHCCCcceEEE
Confidence 12 46 799999999888888888876 7888887 346889999999999742 11244888
Q ss_pred eCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHH-hhhcCCeEEEEecccccccccCCcc
Q 013839 201 HPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRI-FLEDEHLIGCAQSYAKSMGLYGHRV 279 (435)
Q Consensus 201 ~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~s~SK~~g~~G~Rv 279 (435)
+++++||||..- ++++|.++|++||+++++|++|..+.... + ... +.+....++++.|++|.++.| .++
T Consensus 264 ~~~~~~~tG~~~---~l~~I~~l~~~~~~~l~vD~a~~~~~~~~---~---~~~~~~gi~~~D~i~~s~hK~l~~p-~~~ 333 (497)
T 2qma_A 264 GTAGTTDHGAID---DLDFIADMAVKHDMWMHVDGAYGGALILS---S---HKSRLKGVERAHSISVDFHKLFYQT-ISC 333 (497)
T ss_dssp EEBSCTTTCCBC---CHHHHHHHHHHHTCEEEEEETTGGGGGGS---T---TGGGGTTGGGCSEEEEETTTTTCCC-SSC
T ss_pred EcCCCCCCCCCC---CHHHHHHHHHHcCCEEEEehhhhHHHHhC---c---chHhhcCcccCCEEEEcchhccCCC-cce
Confidence 889999999864 46799999999999999999998776431 1 111 111113347788999998855 699
Q ss_pred cEEEEEecChhHHHHHHHHHHHHhhccccC----C-------------ChhHHHHHHHHhCChhhHHHHHHHHHHHHHHH
Q 013839 280 GCLSILCVDSKQAAAIRSQIQQIARAMYGS----P-------------PVHGILLVATILSDPNLKSLWIDEVKIMADRI 342 (435)
Q Consensus 280 G~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~-------------~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~ 342 (435)
|++++ +++. .++.+.....+.... + ..+.++++...+.. +.+++..++.
T Consensus 334 G~l~~--~~~~----~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~r~~~al~~~~~l~~lg~--------~g~~~~~~~~ 399 (497)
T 2qma_A 334 GALLV--NDKS----NFKFLLHHADYLNREHDELPNLVDKSIATTKRFDALKVFMTMQNVGP--------KALGDMYDHL 399 (497)
T ss_dssp EEEEE--SCGG----GGGGGCC--------------------CCSCCCTHHHHHHHHHHTCH--------HHHHHHHHHH
T ss_pred EEEEE--eCHH----HHHHhcCCchhcCCccccCCCccccCCCCCCchhHHHHHHHHHHhCH--------HHHHHHHHHH
Confidence 99963 3554 222221100000000 0 12223333344431 4566777888
Q ss_pred HHHHHHHHHHHHhhCCCCCcccc-ccCcceeEec--CC--C----HHHHHHHhhhccEEEeCC----C----cEEec--c
Q 013839 343 QRKRTTLRQNLEKLGSSLNWEHI-TNQLGMFCFS--GL--T----PYQVDRLAKEFHIYMTQD----G----RISMA--G 403 (435)
Q Consensus 343 ~~~~~~l~~~l~~~~~~~~~~~~-~~~~g~~~~~--~~--~----~~~~~~ll~~~gI~i~pg----g----Ris~~--~ 403 (435)
.++++++.+.|++++. +.+. ++..+++.|. +. . .+.+...+.+.|+.+.++ | |++++ .
T Consensus 400 ~~~a~~l~~~L~~~~~---~~~~~~~~~~~v~f~~~~~~~~~~~l~~~l~~~l~~~G~~~~~~~~~~g~~~lRis~~~~~ 476 (497)
T 2qma_A 400 LAQTLEVADMIRTNDQ---FELLAEPSLSTVLFRATHETADLDELNKALRLEALTRGIAVLGETIVDGKTALKFTILNPC 476 (497)
T ss_dssp HHHHHHHHHHHHTCTT---EEECSCCSSSEEEEEECCSSSCHHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTT
T ss_pred HHHHHHHHHHHhhCCC---eEEEcCCCceEEEEEEcCCccCHHHHHHHHHHHHHhCCCEEEEeeEECCEEEEEEEecCCC
Confidence 8899999999987632 4443 4556544443 11 1 122323334578887652 2 99873 2
Q ss_pred CCCCcHHHHHHHHHHHHHh
Q 013839 404 VTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 404 ~~~e~i~~~~~~l~~~l~~ 422 (435)
.+++++++++++|++++++
T Consensus 477 ~t~edi~~~~~~l~~~~~~ 495 (497)
T 2qma_A 477 LTTSDFESLLSKINMLAVE 495 (497)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 3789999999999988765
No 220
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*
Probab=99.82 E-value=6e-19 Score=182.34 Aligned_cols=308 Identities=11% Similarity=0.014 Sum_probs=187.4
Q ss_pred CCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHH-HhhCCCCe
Q 013839 89 ISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNI-WRDAQIPE 167 (435)
Q Consensus 89 ~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~-~~~~g~~~ 167 (435)
.+..-..++++.+|+++ +.+ ..+. +++|+++|+.++ +.+++.+||+|+++.|+|..+... ++..|+++
T Consensus 170 ~~~~~i~e~e~~lA~~~-gae------~~i~--v~nGtt~an~~a--i~al~~pGD~VLv~~~~H~S~~~~~~~l~Ga~~ 238 (730)
T 1c4k_A 170 IHEGPAVAAEKHAARVY-NAD------KTYF--VLGGSSNANNTV--TSALVSNGDLVLFDRNNHKSVYNSALAMAGGRP 238 (730)
T ss_dssp TTBTHHHHHHHHHHHHT-TCS------EEEE--ESSHHHHHHHHH--HHHHCCTTCEEEEETTCCHHHHHHHTTTTCCEE
T ss_pred CChHHHHHHHHHHHHHH-CCC------cEEE--ECCHHHHHHHHH--HHHhcCCCCEEEEcCCchHHHHHHHHHHCCCEE
Confidence 34344678888888887 442 2344 677778998888 788899999999999999888877 88899999
Q ss_pred eeeeecCCCCCC----cChHhH-----HHHhhcCCCC---c----EEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCcee
Q 013839 168 RTYHYYDPDSKS----LDFAAL-----MDDIKNAPDS---S----FFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFP 231 (435)
Q Consensus 168 ~~v~~~~~~~~~----~d~e~l-----~~~i~~~~~~---~----~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~v 231 (435)
+.++.. .++++ +|+++| ++++.+..++ + +++++++| ||+|.+.+ +++|+++|++|++++
T Consensus 239 v~v~~~-~~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~d---l~~I~~la~~~g~~l 313 (730)
T 1c4k_A 239 VYLQTN-RNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYN---AHEVVKRIGHLCDYI 313 (730)
T ss_dssp EEECEE-ECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEEC---HHHHHHHHGGGBSEE
T ss_pred EEEeCC-ccccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecC---HHHHHHHHHHcCCeE
Confidence 888763 22333 789998 8888742101 3 78888888 68998865 669999999999999
Q ss_pred eeeccCCCc-cCCCCcccHHHHHH-hhhc-CCeEEEEecccccccccCCcccEEEEEecChhHHH--HH--HHHHHHHhh
Q 013839 232 FFDMAYQGF-ASGDLDKDAQAIRI-FLED-EHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAA--AI--RSQIQQIAR 304 (435)
Q Consensus 232 i~Deay~~~-~~~~~~~~~~~~~~-~~~~-~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~--~~--~~~l~~~~~ 304 (435)
++|++|... .+++......++.. ..+. ..+++++.|+||.+ +|.+.|+++. .+++.... .. ...+.....
T Consensus 314 ivDeAh~~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L--~g~~~gg~I~-v~~~~l~g~~~~i~~~~~~~~~~ 390 (730)
T 1c4k_A 314 EFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQ--AGFSQTSQIH-KKDSHIKGQLRYCDHKHFNNSFN 390 (730)
T ss_dssp EEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHS--SCCTTCEEEE-EECGGGTTSTTCCCHHHHHHHHH
T ss_pred EEEcccccccccCcccCCcCcccccccCCCCCCEEEEECCCCCC--CCCCCEEEEE-ecchhhcCcccccCHHHHHHHHH
Confidence 999998642 33310000001100 0011 23679999999985 5666665542 32432100 00 112222211
Q ss_pred -ccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hCCCCCccccccC--------------
Q 013839 305 -AMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEK-LGSSLNWEHITNQ-------------- 368 (435)
Q Consensus 305 -~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~-------------- 368 (435)
....+++.....++..++..-. .+.-.+..+++.++.+.+++.|++ +.. +.+..+.
T Consensus 391 ~~~stsp~~~~iaal~aA~~~l~-----~~~g~~~~~~~~~~a~~lr~~L~~~i~g---~~v~~p~~~~~~~~~~~~~~~ 462 (730)
T 1c4k_A 391 LFMSTSPFYPMYAALDVNAAMQE-----GEAGRKLWHDLLITTIEARKKLIKAGSM---FRPFVPPVVNGKKWEDGDTED 462 (730)
T ss_dssp HHSCSSCCHHHHHHHHHHHHHHS-----HHHHHHHHHHHHHHHHHHHHHHHHTTCS---SEESSCSEETTEEGGGSCHHH
T ss_pred HhCCCCCcHHHHHHHHHHHHHHH-----hhhhHHHHHHHHHHHHHHHHHHhhhCCC---eEEcccccccccccccccccc
Confidence 1123344443333333332111 012244556677777778888876 321 1221110
Q ss_pred -----------------------cc-ee-----Eec---------------CCCHHHHHHHhhhccEEEeCCC----cEE
Q 013839 369 -----------------------LG-MF-----CFS---------------GLTPYQVDRLAKEFHIYMTQDG----RIS 400 (435)
Q Consensus 369 -----------------------~g-~~-----~~~---------------~~~~~~~~~ll~~~gI~i~pgg----Ris 400 (435)
.+ ++ +.+ +++...+.+.|+++||.+.+.+ |++
T Consensus 463 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g~~~~~l~~~L~e~GI~v~~~~~~~ir~~ 542 (730)
T 1c4k_A 463 MANNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEKSDLNSILFL 542 (730)
T ss_dssp HTTCGGGGBCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSEECSSEEEEE
T ss_pred ccccchhhccCccchhccccccCCcccccCCeEEEEEeCCcccccccccccCCCHHHHHHHHHHCCcEEEECCCCeEEEE
Confidence 11 11 111 2455666656667899997754 666
Q ss_pred ecc-CCCCcHHHHHHHHHHHHHhh
Q 013839 401 MAG-VTTGNVNYLANAIHEVTRSE 423 (435)
Q Consensus 401 ~~~-~~~e~i~~~~~~l~~~l~~~ 423 (435)
++. .+.++++.++++|+++.+..
T Consensus 543 ~s~g~t~e~i~~Ll~aL~~i~~~~ 566 (730)
T 1c4k_A 543 MTPAETPAKMNNLITQLLQLQRLI 566 (730)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHHHHHHhc
Confidence 532 37789999999999987654
No 221
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6
Probab=99.82 E-value=2.4e-19 Score=178.41 Aligned_cols=331 Identities=11% Similarity=0.050 Sum_probs=201.5
Q ss_pred chHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccC-----CCeeeEecCCchhHHHHHHHHHH-H----
Q 013839 70 LQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKE-----GRSAGVQALSGTGACRLFAEFQR-R---- 139 (435)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~-----~~v~~~~t~gg~~a~~~~~~~~~-~---- 139 (435)
+..+.+++....+.....|....+..++.+.+++++....+.+... ..-.+++|.||++|+.++..... .
T Consensus 87 ~~~~~~~l~~~~n~~~~~~~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~ 166 (475)
T 3k40_A 87 PAIVADMLSGAIACIGFTWIASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKE 166 (475)
T ss_dssp HHHHHHHHHHHHCCCSSSCCCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccccCccCCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHH
Confidence 3444555554444435568888888899999988873222111000 00123479999999877642221 0
Q ss_pred ------------hCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcC---CCCcEEEEeCCC
Q 013839 140 ------------FHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNA---PDSSFFLLHPSA 204 (435)
Q Consensus 140 ------------~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~---~~~~~~v~~~~p 204 (435)
+.++++|+++.++|..+...++..|++++.+|. + +++ +|+++|++++.+. ...+.+++++.+
T Consensus 167 ~~~~~~~~~~~~~~~~~~vi~s~~~H~s~~~~~~~~g~~~~~v~~-d-~~~-~d~~~L~~~i~~~~~~~~~~~~v~~~~~ 243 (475)
T 3k40_A 167 VKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLLGGVKLRSVQS-E-NHR-MRGAALEKAIEQDVAEGLIPFYAVVTLG 243 (475)
T ss_dssp HHHHCTTSCHHHHHHHEEEEEETTSCHHHHHHHHHHTCEEEEECC-B-TTB-CCHHHHHHHHHHHHHTTCEEEEEEEEBS
T ss_pred hhccCcccccccccCCeEEEECCCchHHHHHHHHHcCCceEEEEC-C-CCC-cCHHHHHHHHHHHHHCCCccEEEEEEec
Confidence 113478999999999999999999999999998 3 456 9999999999742 122677888899
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEE
Q 013839 205 HNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSI 284 (435)
Q Consensus 205 ~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~ 284 (435)
+|+||.+ +++++|+++|++||+++++|++|........ ..... .......+.+..+.+|.++.| ..+|++.
T Consensus 244 ~t~~G~~---~~l~~I~~la~~~~~~lhvD~A~~~~~~~~~--~~~~~--~~gi~~~Ds~~~~~hK~l~~p-~g~g~l~- 314 (475)
T 3k40_A 244 TTNSCAF---DYLDECGPVGNKHNLWIHVDAAYAGSAFICP--EYRHL--MKGIESADSFNFNPHKWMLVN-FDCSAMW- 314 (475)
T ss_dssp CTTTCCB---CCHHHHHHHHHHTTCEEEEECTTGGGGGGSG--GGGGG--GTTGGGCSEEEECHHHHSSCC-SSCEEEE-
T ss_pred CCCCcCc---CCHHHHHHHHHHhCCeEEEeHHhHHHHHhCH--hhHHH--hcCcccCCEEEECchhccCCC-CceEEEE-
Confidence 9999987 4577999999999999999999876433210 01010 111112356778999987744 5577775
Q ss_pred EecChhHHHHHHHHHHHHhhc------------cccCC---ChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 013839 285 LCVDSKQAAAIRSQIQQIARA------------MYGSP---PVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTL 349 (435)
Q Consensus 285 ~~~~~~~~~~~~~~l~~~~~~------------~~~~~---~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l 349 (435)
..+++.+.+.......+... ...+. ..+.++++...+. .+.+++..++..++++++
T Consensus 315 -~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~sr~~~~l~l~~al~~~g--------~~g~~~~~~~~~~~a~~l 385 (475)
T 3k40_A 315 -LKDPSWVVNAFNVDPLYLKHDMQGSAPDYRHWQIPLGRRFRALKLWFVLRLYG--------VENLQAHIRRHCNFAKQF 385 (475)
T ss_dssp -ESSGGGC---------------------------CCCGGGTHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
T ss_pred -EeCHHHHHHHhcCCccccCCCcCCCCCCcccccccCCCcccHHHHHHHHHHHh--------HHHHHHHHHHHHHHHHHH
Confidence 33554211111100000000 00000 1222333333332 145677888899999999
Q ss_pred HHHHHhhCCCCCcccccc-CcceeEec--CC---CHHHHHHHhhhccEEEeCC---C----cEEecc--CCCCcHHHHHH
Q 013839 350 RQNLEKLGSSLNWEHITN-QLGMFCFS--GL---TPYQVDRLAKEFHIYMTQD---G----RISMAG--VTTGNVNYLAN 414 (435)
Q Consensus 350 ~~~l~~~~~~~~~~~~~~-~~g~~~~~--~~---~~~~~~~ll~~~gI~i~pg---g----Ris~~~--~~~e~i~~~~~ 414 (435)
.+.|++++. +.+..+ ..+++.|. +. +.++.+++.++.++.+.|+ | |+++++ .++++++++++
T Consensus 386 ~~~L~~~~g---~~l~~~~~~~iv~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~~~~ 462 (475)
T 3k40_A 386 GDLCVADSR---FELAAEINMGLVCFRLKGSNERNEALLKRINGRGHIHLVPAKIKDVYFLRMAICSRFTQSEDMEYSWK 462 (475)
T ss_dssp HHHHHHSTT---EEESSCCBTTEEEEEESSCHHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHH
T ss_pred HHHHhcCCC---EEEecCCceEEEEEEeCCchHHHHHHHHHHHhCCcEEEEeeEECCEEEEEEEeCCCCCCHHHHHHHHH
Confidence 999998742 455443 33333321 22 2334466655444444442 3 999764 26789999999
Q ss_pred HHHHHHHhhh
Q 013839 415 AIHEVTRSEQ 424 (435)
Q Consensus 415 ~l~~~l~~~~ 424 (435)
+|+++.+++.
T Consensus 463 ~i~~~~~~~~ 472 (475)
T 3k40_A 463 EVSAAADEME 472 (475)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999887654
No 222
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*
Probab=99.82 E-value=7.7e-19 Score=173.32 Aligned_cols=274 Identities=12% Similarity=0.022 Sum_probs=169.4
Q ss_pred HHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHH----hhCCCCeeee
Q 013839 95 TKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIW----RDAQIPERTY 170 (435)
Q Consensus 95 ~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~v 170 (435)
.++++.+++++ +.+ ++++. ++.|++.+.+.+.... .+.+||+|+++.|+|+.+...+ +..|++++.+
T Consensus 111 ~~~~~~la~~~-g~~-----~~~i~--~~~g~taa~ea~~~a~-~~~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~~v 181 (438)
T 1wyu_A 111 FEYQTMIAELA-GLE-----IANAS--MYDGATALAEGVLLAL-RETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTL 181 (438)
T ss_dssp HHHHHHHHHHH-TSS-----EECSC--BSSHHHHHHHHHHHHH-HHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHh-CCC-----ccceE--EeCcHHHHHHHHHHHH-hcCCCCEEEEcCccCHhHHHHHHHHHHHCCCEEEEE
Confidence 46666677766 432 34666 7888885544442121 3579999999999999887655 4589999988
Q ss_pred eecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHH
Q 013839 171 HYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQ 250 (435)
Q Consensus 171 ~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~ 250 (435)
+. +++.+|+++ ++ ++++++++++| ||||.+.+ +++|.++|++||+++++|..-+.++.-. .
T Consensus 182 ~~---~~~~~d~~~----i~---~~t~~v~i~~p-n~tG~~~~---l~~i~~la~~~g~~vivd~d~~a~g~~~---~-- 242 (438)
T 1wyu_A 182 PL---EGGRTPLPE----VG---EEVGAVVVQNP-NFLGALED---LGPFAEAAHGAGALFVAVADPLSLGVLK---P-- 242 (438)
T ss_dssp CC---BTTBCCCCC----CC---TTEEEEEEESS-CTTSBCCC---HHHHHHHHHHTTCEEEEECCTTGGGTBC---C--
T ss_pred cC---cCCccCHHH----hC---CCeEEEEEECC-CCCeEEec---HHHHHHHHHHcCCEEEEEechhhccCcC---C--
Confidence 76 235778777 44 57899999999 99999874 6799999999999999663211122111 1
Q ss_pred HHHHhhhcCCeEEEEecccccc----cccCCcccEEEEEecChhHHHHHHHHHHHH------------------------
Q 013839 251 AIRIFLEDEHLIGCAQSYAKSM----GLYGHRVGCLSILCVDSKQAAAIRSQIQQI------------------------ 302 (435)
Q Consensus 251 ~~~~~~~~~~~~i~~~s~SK~~----g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~------------------------ 302 (435)
+ ..+ +..+++.| +|.| ++.|.|+||+++ +++ +++.+...
T Consensus 243 ~-~~~----g~D~~~~s-~kk~~~~~~~~Gp~~G~l~~---~~~----~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~ 309 (438)
T 1wyu_A 243 P-GAY----GADIAVGD-GQSLGLPMGFGGPHFGFLAT---KKA----FVRQLPGRLVSETVDVEGRRGFILTLQAREQY 309 (438)
T ss_dssp H-HHH----TCSEEEEE-CTTTTCCCGGGCSCCEEEEE---CGG----GGGGCCSCCEEEEEBTTSCEEEEECCGGGSHH
T ss_pred C-ccC----CCCEEEEC-CcccCCCccCCCCCeeEEEE---cHH----HHHhCCCceeccccccCCCcceeeeccccccc
Confidence 1 111 22345555 5544 466789999964 666 44433110
Q ss_pred hh--ccccCC---ChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCCccccccCcceeE--e
Q 013839 303 AR--AMYGSP---PVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKL-GSSLNWEHITNQLGMFC--F 374 (435)
Q Consensus 303 ~~--~~~~~~---~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~g~~~--~ 374 (435)
.+ ..+.+. +.+...+++..+.... .+.+++..+++.++++++.+.|+++ | +.+..+. .+|. .
T Consensus 310 ~r~~~~t~~~~~~~~~~a~~aa~~l~~~~-----~~g~~~~~~~~~~~~~~l~~~L~~~~g----~~~~~~~-~~~~~~~ 379 (438)
T 1wyu_A 310 IRRAKAKSNITTNAQLTALMGAMYLAALG-----PEGLREVALKSVEMAHKLHALLLEVPG----VRPFTPK-PFFNEFA 379 (438)
T ss_dssp HHGGGSSCCCCSCCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHTTSTT----CEECSCS-SBCSEEE
T ss_pred cchhcccCCccchHHHHHHHHHHHHHHhC-----HHHHHHHHHHHHHHHHHHHHHHhcCCC----eEECCCC-CeEEEEE
Confidence 00 111222 1122211221132111 1446778888999999999999887 4 4444433 2332 1
Q ss_pred c--CCCHHHH-HHHhhhccEEE--eCC-----C--cEEecc-CCCCcHHHHHHHHHHHH
Q 013839 375 S--GLTPYQV-DRLAKEFHIYM--TQD-----G--RISMAG-VTTGNVNYLANAIHEVT 420 (435)
Q Consensus 375 ~--~~~~~~~-~~ll~~~gI~i--~pg-----g--Ris~~~-~~~e~i~~~~~~l~~~l 420 (435)
+ +.+.+.+ ..| .++||.+ .++ + |+++.. .+.+++++++++|++++
T Consensus 380 ~~~~~~~~~~~~~L-~~~gi~v~~~~~~~~~~~~lRis~~~~~t~edi~~~~~~l~~~l 437 (438)
T 1wyu_A 380 LALPKDPEAVRRAL-AERGFHGATPVPREYGENLALFAATELHEEEDLLALREALKEVL 437 (438)
T ss_dssp EECSSCHHHHHHHH-HHTTCCCCEECCTTSCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred EeCCCCHHHHHHHH-HHCCceeccccccccCCCeEEEEecccCCHHHHHHHHHHHHHHh
Confidence 2 3354445 555 5679998 443 2 999863 27789999999988764
No 223
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}
Probab=99.81 E-value=3.7e-19 Score=177.54 Aligned_cols=324 Identities=13% Similarity=0.038 Sum_probs=204.3
Q ss_pred hHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhH---cCCCCcccc---CCCeeeEecCCchhHHHHHHHHHHH-----
Q 013839 71 QCVREAEAKIAGSEFLESISASVSTKMVEESVKLV---YGKDSDVVK---EGRSAGVQALSGTGACRLFAEFQRR----- 139 (435)
Q Consensus 71 ~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l---~~~~~~~~~---~~~v~~~~t~gg~~a~~~~~~~~~~----- 139 (435)
..+.+++....+.....|....+..++.+.+++++ ++.....+. ...-.+++|.||++|+..+.....-
T Consensus 93 ~~~~~~~~~~~n~~~~~~~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~ 172 (481)
T 4e1o_A 93 SLLGDMLADAINCLGFTWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILE 172 (481)
T ss_dssp HHHHHHHHHHHCCCCSSTTTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccCCcCCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHH
Confidence 44455554444433566888888999999998887 333211000 0001234799999998877422110
Q ss_pred ------------hCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcC---CCCcEEEEeCCC
Q 013839 140 ------------FHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNA---PDSSFFLLHPSA 204 (435)
Q Consensus 140 ------------~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~---~~~~~~v~~~~p 204 (435)
..++++|+++.++|..+...+...|.+++.+|. ++++.+|+++|++++++. ...+.+++.+.+
T Consensus 173 ~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g~~~~~v~~--~~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~ 250 (481)
T 4e1o_A 173 MKTSEPDADESSLNARLVAYASDQAHSSVEKAGLISLVKMKFLPV--DDNFSLRGEALQKAIEEDKQRGLVPVFVCATLG 250 (481)
T ss_dssp HHHHCTTSCHHHHHTTEEEEEETTSCHHHHHHHHHHTCEEEEECC--CTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBS
T ss_pred hhhcCcccccccccCCeEEEEcCcchHHHHHHHHhCCCceEEEEc--CCCCcCCHHHHHHHHHHHHhCCCCcEEEEEecC
Confidence 125789999999999999888888999999987 356899999999999742 122678888899
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHh-hhcCCeEEEEecccccccccCCcccEEE
Q 013839 205 HNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIF-LEDEHLIGCAQSYAKSMGLYGHRVGCLS 283 (435)
Q Consensus 205 ~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~s~SK~~g~~G~RvG~~~ 283 (435)
+|+||.+ +++++|+++|++||+++++|++|........ ..+.. .+...-+.+..+.+|.++.| ..+|+++
T Consensus 251 ~t~~G~i---d~l~~I~~la~~~~~~lhvDaA~g~~~~~~~-----~~~~~~~gi~~aDsi~~~~hK~l~~p-~g~g~l~ 321 (481)
T 4e1o_A 251 TTGVCAF---DCLSELGPICAREGLWLHIDAAYAGTAFLCP-----EFRGFLKGIEYADSFTFNPSKWMMVH-FDCTGFW 321 (481)
T ss_dssp CTTTCCB---CCHHHHHHHHHHHTCEEEEECTTGGGGGGSG-----GGGGGGTTGGGCSEEEECHHHHSSCC-SSCEEEE
T ss_pred CCCCcCc---CCHHHHHHHHHHcCCeEEeehhhHHHHHhCh-----hhHHHhcCcccCCEEEEChHHhcCCC-CceEEEE
Confidence 9999976 4577999999999999999999876543211 11111 11112355678999998755 4467765
Q ss_pred EEecChhHHHHHHHH-HHHHhhcccc------------------CCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHH
Q 013839 284 ILCVDSKQAAAIRSQ-IQQIARAMYG------------------SPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQR 344 (435)
Q Consensus 284 ~~~~~~~~~~~~~~~-l~~~~~~~~~------------------~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~ 344 (435)
..+++ .... +.....+... ....+.++++...+. .+.+++..++..+
T Consensus 322 --~~~~~----~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~r~~~~l~~~~al~~~g--------~~g~~~~~~~~~~ 387 (481)
T 4e1o_A 322 --VKDKY----KLQQTFSVNPIYLRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFG--------VKNLQAHVRHGTE 387 (481)
T ss_dssp --ESBHH----HHHTTTCCCCGGGCCTTTTTSCCGGGGSSSSCCCCTHHHHHHHHHHHH--------HHHHHHHHHHHHH
T ss_pred --EeCHH----HHHHHhcCCchhccCcccCCCCCcccccccCCCCccHHHHHHHHHHhH--------HHHHHHHHHHHHH
Confidence 33554 3221 1100000000 012333444444442 1456777888999
Q ss_pred HHHHHHHHHHhhCCCCCccccccCcceeEecCC------CHHHHHHHhhhcc-EEEeCC---C----cEEecc--CCCCc
Q 013839 345 KRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL------TPYQVDRLAKEFH-IYMTQD---G----RISMAG--VTTGN 408 (435)
Q Consensus 345 ~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~------~~~~~~~ll~~~g-I~i~pg---g----Ris~~~--~~~e~ 408 (435)
+++++.+.|++++. +.+..+....++++.+ +.++.+++.+ .| +.+.|+ | |+++++ .++++
T Consensus 388 ~a~~l~~~L~~~~g---~~~~~~~~~~~v~f~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~g~~~lR~~~~~~~tt~~d 463 (481)
T 4e1o_A 388 MAKYFESLVRNDPS---FEIPAKRHLGLVVFRLKGPNSLTENVLKEIAK-AGRLFLIPATIQDKLIIRFTVTSQFTTRDD 463 (481)
T ss_dssp HHHHHHHHHHTCTT---EECCSCCCSSEEEEEESSCHHHHHHHHHHHHH-HCSSBCEEEEETTEEEEEEECCCTTCCHHH
T ss_pred HHHHHHHHHhcCCC---eEEecCCceeEEEEEeCCchHHHHHHHHHHHh-CCeEEEEeeEECCEEEEEEEeCCCCCCHHH
Confidence 99999999988742 4554433333444322 2234466654 56 444442 3 998754 25789
Q ss_pred HHHHHHHHHHHHHhh
Q 013839 409 VNYLANAIHEVTRSE 423 (435)
Q Consensus 409 i~~~~~~l~~~l~~~ 423 (435)
+++++++|+++.+++
T Consensus 464 i~~~~~~i~~~~~~l 478 (481)
T 4e1o_A 464 ILRDWNLIRDAATLI 478 (481)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988754
No 224
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}
Probab=99.81 E-value=1.5e-18 Score=174.67 Aligned_cols=321 Identities=13% Similarity=0.070 Sum_probs=196.9
Q ss_pred hHHHHHHHHhcCCCCCCCCCCcccHHHHHH----HHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHH-----hC
Q 013839 71 QCVREAEAKIAGSEFLESISASVSTKMVEE----SVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRR-----FH 141 (435)
Q Consensus 71 ~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~----ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~-----~~ 141 (435)
....+.+....+.....|....+..++.+. +++++ +.. ++++. ++.||++|+.++...... +.
T Consensus 123 ~~~~~~l~~~~n~~~~~~~~s~~~~~le~~~~~~la~l~-g~~-----~~~~~--~t~ggtea~~~al~~ar~~~~~~~~ 194 (515)
T 2jis_A 123 ALAGRIITESLNTSQYTYEIAPVFVLMEEEVLRKLRALV-GWS-----SGDGI--FCPGGSISNMYAVNLARYQRYPDCK 194 (515)
T ss_dssp HHHHHHHHHHHCCCTTCTTTCHHHHHHHHHHHHHHHHHH-TCS-----SCEEE--EESSHHHHHHHHHHHHHHHHCTTHH
T ss_pred HHHHHHHHHHhccCCCchhhchHHHHHHHHHHHHHHHHh-CCC-----CCCeE--EcCCcHHHHHHHHHHHHHHHhhHHh
Confidence 333444444434434457666665555444 55555 332 34666 899999998777422210 12
Q ss_pred -CCC------EEEEcCCCChhhHHHHhhCCC---CeeeeeecCCCCCCcChHhHHHHhhcC---CCCcEEEEeCCCCCCC
Q 013839 142 -PES------HIYFPDPTWSNHHNIWRDAQI---PERTYHYYDPDSKSLDFAALMDDIKNA---PDSSFFLLHPSAHNPT 208 (435)
Q Consensus 142 -~gd------~Vlv~~p~y~~~~~~~~~~g~---~~~~v~~~~~~~~~~d~e~l~~~i~~~---~~~~~~v~~~~p~NPt 208 (435)
+|| +|+++.+.|+.+...++..|. +++.+|. ++++.+|+++|++++.+. ..++++|++++|+|||
T Consensus 195 ~~G~~~~~~~~vl~s~~~h~s~~~~~~~~g~g~~~v~~v~~--~~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~t 272 (515)
T 2jis_A 195 QRGLRTLPPLALFTSKECHYSIQKGAAFLGLGTDSVRVVKA--DERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVL 272 (515)
T ss_dssp HHCGGGSCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECB--CTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTT
T ss_pred hcCccccCCeEEEECCCccHHHHHHHHHcCCCCCcEEEEec--CCCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCC
Confidence 575 899999999999888888888 8888887 346789999999999742 2258899999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecC
Q 013839 209 GVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVD 288 (435)
Q Consensus 209 G~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~ 288 (435)
|.+.+ +++|.++|++||+++++|++|..+..... .... .+.+....++++.|++|.++.| .++|+++ +++
T Consensus 273 G~i~~---l~~I~~la~~~g~~l~vD~a~~~~~~~~~-~~~~---~~~g~~~aD~v~~s~hK~l~~p-~g~G~l~--~~~ 342 (515)
T 2jis_A 273 GAFDP---LEAIADVCQRHGLWLHVDAAWGGSVLLSQ-THRH---LLDGIQRADSVAWNPHKLLAAG-LQCSALL--LQD 342 (515)
T ss_dssp CCBCC---HHHHHHHHHHHTCEEEEEETTGGGGGGCT-TTGG---GGTTGGGCSEEEECTTSTTCCC-SCCEEEE--ESC
T ss_pred CCccC---HHHHHHHHHHcCCeEEEehhhhhHHHhCh-hhHh---hcCCCccCCEEEECcccccCCC-CCeeEEE--EeC
Confidence 99865 66999999999999999999887765321 0000 1112223467889999998744 5789996 335
Q ss_pred h-hHHHHHHHHHHHHhh---c------ccc--------CCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 013839 289 S-KQAAAIRSQIQQIAR---A------MYG--------SPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLR 350 (435)
Q Consensus 289 ~-~~~~~~~~~l~~~~~---~------~~~--------~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 350 (435)
+ +...........+.. . ... ....+.++++..++.. +.+++..++..++++++.
T Consensus 343 ~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~al~~~~~l~~lg~--------~g~~~~~~~~~~~a~~l~ 414 (515)
T 2jis_A 343 TSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQGD--------QGLERRIDQAFVLARYLV 414 (515)
T ss_dssp CSCHHHHHHCC---------CCSCGGGCCGGGCSCSSCCCCHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhcCCchhccCCcccccccCCCCCCCCCCCCcccHHHHHHHHHHHhH--------HHHHHHHHHHHHHHHHHH
Confidence 5 422221100111110 0 000 0112333344344421 446677788888999999
Q ss_pred HHHHhhCCCCCccccc-cCcceeEecCC--------C-HH----------HHHHHhhhccEEEe-----CC--C--cEEe
Q 013839 351 QNLEKLGSSLNWEHIT-NQLGMFCFSGL--------T-PY----------QVDRLAKEFHIYMT-----QD--G--RISM 401 (435)
Q Consensus 351 ~~l~~~~~~~~~~~~~-~~~g~~~~~~~--------~-~~----------~~~~ll~~~gI~i~-----pg--g--Ris~ 401 (435)
+.|++++. +.+.. +..+.+.|... + .+ .+...+.+.|+... ++ + |+++
T Consensus 415 ~~L~~~~g---~~~~~~~~~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~lRis~ 491 (515)
T 2jis_A 415 EEMKKREG---FELVMEPEFVNVCFWFVPPSLRGKQESPDYHERLSKVAPVLKERMVKEGSMMIGYQPHGTRGNFFRVVV 491 (515)
T ss_dssp HHHHTSTT---EEESSCCSSSEEEEEECCGGGTTCTTSTTHHHHHHTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEEEC
T ss_pred HHHhcCCC---EEEeCCCCeeEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEEECCceEEEEEEe
Confidence 99988632 44443 33454555211 1 11 13223345676442 22 1 9998
Q ss_pred c-c-CCCCcHHHHHHHHHHHHHh
Q 013839 402 A-G-VTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 402 ~-~-~~~e~i~~~~~~l~~~l~~ 422 (435)
+ . .+++++++++++|++++++
T Consensus 492 ~~~~~t~edid~~~~~l~~~~~~ 514 (515)
T 2jis_A 492 ANSALTCADMDFLLNELERLGQD 514 (515)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHHhh
Confidence 4 2 3788999999999887653
No 225
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.79 E-value=4.9e-18 Score=177.06 Aligned_cols=172 Identities=11% Similarity=0.046 Sum_probs=121.5
Q ss_pred ccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeee
Q 013839 93 VSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHY 172 (435)
Q Consensus 93 g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~ 172 (435)
-..++++.+++.+ +.+ +.+. +++|+++|+..+ +.+++.|||+|+++.|+|..+...+...|++++.++.
T Consensus 206 ~v~~~ee~la~l~-G~d------~~i~--~~~Gtt~a~~~~--i~al~~~GD~Vlv~~~~h~s~~~~~~~~G~~~v~v~~ 274 (755)
T 2vyc_A 206 AFGESEKYAARVF-GAD------RSWS--VVVGTSGSNRTI--MQACMTDNDVVVVDRNCHKSIEQGLMLTGAKPVYMVP 274 (755)
T ss_dssp HHHHHHHHHHHHH-TCS------EEEE--ESSHHHHHHHHH--HHHHCCTTCEEEEESSCCHHHHHHHHHHCCEEEEECC
T ss_pred HHHHHHHHHHHHh-CCC------ceEE--ECCcHHHHHHHH--HHHhcCCCCEEEECCCchHHHHHHHHHcCCEEEEEeC
Confidence 3456666666666 542 2344 678888888888 7888999999999999999988888889999998876
Q ss_pred cCCCCCC----c-----ChHhHHHHhhcCCC-------CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeecc
Q 013839 173 YDPDSKS----L-----DFAALMDDIKNAPD-------SSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMA 236 (435)
Q Consensus 173 ~~~~~~~----~-----d~e~l~~~i~~~~~-------~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Dea 236 (435)
. .++++ + |+++|++++++.+. +++++++++| ||||.+.+ +++|+++|++|++++++|++
T Consensus 275 ~-~~~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~d---l~~I~~ia~~~~~~livDeA 349 (755)
T 2vyc_A 275 S-RNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYN---AKEAQDLLEKTSDRLHFDEA 349 (755)
T ss_dssp C-BCTTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEEC---HHHHHHHHTTTCSEEEEECT
T ss_pred C-CCccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecC---HHHHHHHHHHcCCEEEEECc
Confidence 3 23333 4 99999999975321 2247888888 79998865 66999999999999999999
Q ss_pred CCCc-cCCCCcccHHHHHHh--hh-cCCeEEEEecccccccccCCcccEEE
Q 013839 237 YQGF-ASGDLDKDAQAIRIF--LE-DEHLIGCAQSYAKSMGLYGHRVGCLS 283 (435)
Q Consensus 237 y~~~-~~~~~~~~~~~~~~~--~~-~~~~~i~~~s~SK~~g~~G~RvG~~~ 283 (435)
|... .+++...+..++ .. .+ ...+++++.|+||++ +|.+.|.++
T Consensus 350 ~~~~~~~~~~~~~~~~~-~g~~aD~~~~~~iv~~S~hK~L--~g~~~g~~i 397 (755)
T 2vyc_A 350 WYGYARFNPIYADHYAM-RGEPGDHNGPTVFATHSTHKLL--NALSQASYI 397 (755)
T ss_dssp TCTTGGGCGGGTTSSSS-CSCCCCCSSBEEEEEEETTTSS--SCCTTCEEE
T ss_pred CchhcccCcccCCcchh-cCCcCCccCCCeEEEECccccc--cCcCCeeee
Confidence 8643 222100000111 11 12 245778999999985 567655444
No 226
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=99.73 E-value=9.2e-17 Score=164.72 Aligned_cols=299 Identities=11% Similarity=0.073 Sum_probs=179.4
Q ss_pred CCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCe
Q 013839 88 SISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPE 167 (435)
Q Consensus 88 Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~ 167 (435)
..|..-+.++++.+|+++ +.+ +.+. +++|+++|+..+ +.++++|||+|+++.++|..+...+...|+++
T Consensus 191 ~~~~g~i~eaE~~lA~~f-Ga~------~a~~--v~nGts~An~~a--i~al~~pGD~VLv~r~~H~S~~~~l~lsGa~p 259 (715)
T 3n75_A 191 LDHSGPHKEAEQYIARVF-NAD------RSYM--VTNGTSTANKIV--GMYSAPAGSTILIDRNCHKSLTHLMMMSDVTP 259 (715)
T ss_dssp TTTBTHHHHHHHHHHHHH-TCS------EEEE--ESSHHHHHHHHH--HHHHCCTTCEEEEESSCCHHHHHHHHHSCCEE
T ss_pred CCCcHHHHHHHHHHHHHh-CCC------CceE--ECcHHHHHHHHH--HHHhCCCCCEEEECCCccHHHHHHHHHcCCEE
Confidence 344444578888888887 442 1233 566667888777 78889999999999999999999999999999
Q ss_pred eeeeecCCCCCCc---------ChHhHHHHhhcCCC--CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeecc
Q 013839 168 RTYHYYDPDSKSL---------DFAALMDDIKNAPD--SSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMA 236 (435)
Q Consensus 168 ~~v~~~~~~~~~~---------d~e~l~~~i~~~~~--~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Dea 236 (435)
+.++.. .+++++ |++.|++++.+.+. .++++++++| ||+|.+.+.+ +|.++|++++ +++||+
T Consensus 260 v~v~~~-~~~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p-n~~G~v~dl~---~I~ela~~~~--livDEA 332 (715)
T 3n75_A 260 IYFRPT-RNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYNTD---FIKKTLDVKS--IHFDSA 332 (715)
T ss_dssp EEECCC-BCTTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS-CTTSEEECHH---HHHHHCCCSE--EEEECT
T ss_pred EEEecc-ccccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC-CCCCccCCHH---HHHHHhCcCc--EEEccc
Confidence 998763 334554 89999999986431 1237888888 9999998655 7777777663 799999
Q ss_pred CCCcc-CCCCcccHHHHHHhhh--cCCe-EEEEecccccccccCCc-ccEEEEEecChhHHHHHHHHHHHHhhcc-ccCC
Q 013839 237 YQGFA-SGDLDKDAQAIRIFLE--DEHL-IGCAQSYAKSMGLYGHR-VGCLSILCVDSKQAAAIRSQIQQIARAM-YGSP 310 (435)
Q Consensus 237 y~~~~-~~~~~~~~~~~~~~~~--~~~~-~i~~~s~SK~~g~~G~R-vG~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~ 310 (435)
|.... +++. .+....... ..+. ++++.|++|+++ |+. .|++.+ . +.- ....+++..... +.++
T Consensus 333 H~~~~~f~~~---~~~~~al~~g~~aD~vii~~~S~hKtL~--gltqgs~i~v-~-~~i----~~~~~~~~~~~~~STSp 401 (715)
T 3n75_A 333 WVPYTNFSPI---YEGKCGMSGGRVEGKVIYETQSTHKLLA--AFSQASMIHV-K-GDV----NEETFNEAYMMHTTTSP 401 (715)
T ss_dssp TCTTGGGSGG---GTTSSTTSSSCCTTCEEEEEECHHHHSS--CCTTCEEEEE-E-SCC----CHHHHHHHHHHTSCSSC
T ss_pred cccccccCCc---cccccccccCcCCCEEEEEEeccccccc--CCCCeeEEEe-C-chh----hHHHHHHHHHhhcCCCc
Confidence 86543 3321 000111111 1233 367999999975 442 467653 2 332 122233322222 2345
Q ss_pred ChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CC--ccccccC-------------------
Q 013839 311 PVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSS-LN--WEHITNQ------------------- 368 (435)
Q Consensus 311 ~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~--~~~~~~~------------------- 368 (435)
+.+...++..++..-. ...-++.++++.++.+.+++.|++++.. .+ +.+..++
T Consensus 402 sy~~~AsldaA~~~~~-----~~~g~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~gf 476 (715)
T 3n75_A 402 HYGIVASTETAAAMMK-----GNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGF 476 (715)
T ss_dssp CHHHHHHHHHHHHHHS-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCSCEECCTTCCTTCC
T ss_pred hHHHHHHHHHHHHHHH-----hhccHHHHHHHHHHHHHHHHHHHHhhhhcccceeeccCcccccchhhhccCcccccccc
Confidence 5444444433332100 0122345566667777777777655310 00 0010000
Q ss_pred ----cceeE---------e-----------cCCCHHHHHHHhhhccEEEeCCC------cEEeccCCCCcHHHHHHHHHH
Q 013839 369 ----LGMFC---------F-----------SGLTPYQVDRLAKEFHIYMTQDG------RISMAGVTTGNVNYLANAIHE 418 (435)
Q Consensus 369 ----~g~~~---------~-----------~~~~~~~~~~ll~~~gI~i~pgg------Ris~~~~~~e~i~~~~~~l~~ 418 (435)
.+.+. . .|++...+.+.|+++||.+.-.+ -++++. +.++++.++++|.+
T Consensus 477 ~~~~~~~~~~Dp~Kl~i~~~~~~~~G~~~~~Gi~g~~~~~~L~~~~I~~E~~d~~~vl~l~s~g~-~~~~~~~L~~aL~~ 555 (715)
T 3n75_A 477 KNIDNEHMYLDPIKVTLLTPGMEKDGTMSDFGIPASIVAKYLDEHGIVVEKTGPYNLLFLFSIGI-DKTKALSLLRALTD 555 (715)
T ss_dssp TTCCSSSEEECTTEEEEECSCBCTTSCBCSSCCCHHHHHHHHHHTTCCCSEEETTEEEEECCTTC-CHHHHHHHHHHHHH
T ss_pred cccccCcccCCCeEEEEEcCCCCCCCccccCCCcHHHHHHHHHHCCCEEEecCCCcEEEEeCCCC-CHHHHHHHHHHHHH
Confidence 00000 0 13455677777788899997654 334444 67788889888887
Q ss_pred HHH
Q 013839 419 VTR 421 (435)
Q Consensus 419 ~l~ 421 (435)
+-+
T Consensus 556 ~~~ 558 (715)
T 3n75_A 556 FKR 558 (715)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 227
>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.70 E-value=2.9e-16 Score=149.73 Aligned_cols=274 Identities=14% Similarity=0.099 Sum_probs=175.4
Q ss_pred cHHHHHHHHHhHcCCCCccccCCCeeeEe-cCCchhHHHHHHHHHHHhCCCCEEE-EcCCCChh-hHHHHhhCCCCeeee
Q 013839 94 STKMVEESVKLVYGKDSDVVKEGRSAGVQ-ALSGTGACRLFAEFQRRFHPESHIY-FPDPTWSN-HHNIWRDAQIPERTY 170 (435)
Q Consensus 94 ~~~lr~~ia~~l~~~~~~~~~~~~v~~~~-t~gg~~a~~~~~~~~~~~~~gd~Vl-v~~p~y~~-~~~~~~~~g~~~~~v 170 (435)
+.+.|+.+++++.... +++|+ + |.|||++++++ +..++ +||++. +....|.. +...++..|+++..+
T Consensus 52 ~~~~r~~la~ll~~~~-----~~~v~--f~t~~~T~a~n~~--~~~~~-~~~~~~~i~~~~~~~~~~~~a~~~G~~v~~~ 121 (361)
T 3m5u_A 52 HFGAQEKAKKLYELND-----DYEVL--FLQGGASLQFAMI--PMNLA-LNGVCEYANTGVWTKKAIKEAQILGVNVKTV 121 (361)
T ss_dssp HHHHHHHHHHHHTCCT-----TEEEE--EESSHHHHHHHHH--HHHHC-CSSCEEEEECSHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHhCCCC-----CceEE--EEcCcHHHHHHHH--HHhcC-CCCeEEEEeCCHHHHHHHHHHHHcCCceEEE
Confidence 4677888888884322 23566 6 99999999998 67777 888763 23223321 233456779999999
Q ss_pred eecCCCC-CCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccH
Q 013839 171 HYYDPDS-KSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDA 249 (435)
Q Consensus 171 ~~~~~~~-~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~ 249 (435)
+. +..+ +..+++. + +. ++++++.+++.+|.||+..+. +++ +|+++++|.+ +.+...+.+
T Consensus 122 ~~-~~~g~~~~~~~~-~--l~---~~t~lv~~~~~e~~tG~~~~~--------i~~-~~~~~~vD~~-q~~g~~~id--- 181 (361)
T 3m5u_A 122 AS-SEESNFDHIPRV-E--FS---DNADYAYICSNNTIYGTQYQN--------YPK-TKTPLIVDAS-SDFFSRKVD--- 181 (361)
T ss_dssp EE-CTTTTSCSCCCC-C--CC---TTSSEEEEESEETTTTEECSS--------CCC-CSSCEEEECG-GGTTSSCCC---
T ss_pred ec-ccCcCCCcCChh-h--cC---CCCCEEEEeCCCCCcceeCCc--------ccc-cCCEEEEEcc-cccCCCCCC---
Confidence 87 2332 1146666 3 65 678888888888888998662 233 4999999998 444433222
Q ss_pred HHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHH-----------H--hhccccCCChhHHH
Q 013839 250 QAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQ-----------I--ARAMYGSPPVHGIL 316 (435)
Q Consensus 250 ~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~-----------~--~~~~~~~~~~~~q~ 316 (435)
..+..+++.|..|.+|.+| +|++++ +++ +.+.+.. . ....+.+++.....
T Consensus 182 --------~~~~d~~~~s~~K~~gp~G--~g~l~~---~~~----~~~~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~ 244 (361)
T 3m5u_A 182 --------FSNIALFYGGVQKNAGISG--LSCIFI---RKD----MLERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIY 244 (361)
T ss_dssp --------CTTEEEEEEETTTTSSCTT--CEEEEE---EHH----HHHHHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHH
T ss_pred --------cccCCEEEEechhccCCCc--cEEEEE---cHH----HHhhhcCCCCCceeehHHHhhcCCCCCCccHHHHH
Confidence 1123578889999999777 577764 666 3333321 1 11233456666666
Q ss_pred HHHHHhCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhCCCCCcccc-cc--C-cceeE--ecC---CCHHHHHHHh
Q 013839 317 LVATILSDPNLKSLWID-EVKIMADRIQRKRTTLRQNLEKLGSSLNWEHI-TN--Q-LGMFC--FSG---LTPYQVDRLA 386 (435)
Q Consensus 317 ~~~~~l~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~--~-~g~~~--~~~---~~~~~~~~ll 386 (435)
++..+++--. +. .++...++.+++++++++.|++++.- .... .+ . .+... ..+ ++.+ +...|
T Consensus 245 ~l~~al~~l~-----~~gG~~~i~~~~~~l~~~l~~~L~~~~g~--~~~~~~~~~rs~~ivsf~~~~~~~~~~~-~~~~L 316 (361)
T 3m5u_A 245 MFNLEMDWLL-----NQGGLDKVHEKNSQKATMLYECIDLSNGF--YKGHADKKDRSLMNVSFNIAKNKDLEPL-FVKEA 316 (361)
T ss_dssp HHHHHHHHHH-----TTTCHHHHHHHHHHHHHHHHHHHHTSTTS--EEESSCGGGBCSSEEEEEESSCTTHHHH-HHHHH
T ss_pred HHHHHHHHHH-----HccCHHHHHHHHHHHHHHHHHHHHHCCCe--eeccCCHHHcCCeEEEEECCCchhhhHH-HHHHH
Confidence 6666654211 12 36778888999999999999988620 1111 11 1 12222 223 2333 43455
Q ss_pred hhccEEEeCC----C--cEEeccC-CCCcHHHHHHHHHHHHHh
Q 013839 387 KEFHIYMTQD----G--RISMAGV-TTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 387 ~~~gI~i~pg----g--Ris~~~~-~~e~i~~~~~~l~~~l~~ 422 (435)
+++||.+.+| | |+|+... +.++++++++.|+++.++
T Consensus 317 ~~~gI~~~~g~~~~g~iRiS~~~~~t~edId~l~~al~~~~~~ 359 (361)
T 3m5u_A 317 EEAGMIGLKGHRILGGIRASIYNALNLDQVKTLCEFMKEFQGK 359 (361)
T ss_dssp HHTTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHCCCEEecCCCccCeEEEEccCCCCHHHHHHHHHHHHHHHHh
Confidence 7789999887 3 9998654 789999999999998764
No 228
>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*
Probab=99.70 E-value=2.3e-15 Score=147.21 Aligned_cols=333 Identities=11% Similarity=0.028 Sum_probs=198.8
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCCCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecCCc
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGSEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQALSG 126 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~gg 126 (435)
.+++..||+..|.-...-|. ..+++++++.+++..+... ..+..-..++.+.+++.+.+ .+.+. ++++|
T Consensus 84 ~dG~~ylD~~~g~~~~~lGH-~hp~v~~Av~~q~~~~~~~-~~~~~~~~~lae~l~~~~p~-------~~~v~--f~~SG 152 (454)
T 4ao9_A 84 ADGHRYADFIAEYTAGVYGH-SAPEIRDAVIEAMQGGINL-TGHNLLEGRLARLICERFPQ-------IEQLR--FTNSG 152 (454)
T ss_dssp TTCCEEEESSGGGGTTTTCS-CCHHHHHHHHHHHHTCSCC-CSEESSHHHHHHHHHHHSTT-------CSEEE--EESSH
T ss_pred CCCCEEEEccccHHhhcccC-CCHHHHHHHHHHHhcCCCc-cCCcHHHHHHHHHHHHhCCC-------CCEEE--EeCch
Confidence 46788999988753122222 2334555555566543222 22233345777888877633 24677 89999
Q ss_pred hhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhC-CCCee---eeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeC
Q 013839 127 TGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDA-QIPER---TYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHP 202 (435)
Q Consensus 127 ~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~-g~~~~---~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~ 202 (435)
++|+..+..+.......++|+....+|.+....+... +...+ .... +. -|++.+++.+++..++..+|++.
T Consensus 153 sEA~e~AiklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~-p~----nd~~~l~~~l~~~~~~iAavIvE 227 (454)
T 4ao9_A 153 TEANLMALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVL-PY----NDAQTARAQIERHGPEIAVVLVE 227 (454)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEE-CT----TCHHHHHHHHHHTGGGEEEEEEC
T ss_pred HHHHHHHHHHHHhcccCCeEEEEeCCcCCccccccccccCccCCCCcccC-CC----chHHHHHHHHhhcCCceEEEEec
Confidence 9999998755544444588999998887653221111 11111 1111 11 37889999998776678888887
Q ss_pred CCCCCCCCCC-CHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEecccccccccCCcccE
Q 013839 203 SAHNPTGVDP-TEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGC 281 (435)
Q Consensus 203 ~p~NPtG~~~-~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~ 281 (435)
......|.+. +++.+++|.++|++||+++|.||+..+ ..+. ......+ +....+ -+++|.+| .|+.+|.
T Consensus 228 Pv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~tG-R~G~----~~a~e~~-gv~PDi---~t~gK~lg-gG~Piga 297 (454)
T 4ao9_A 228 PMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMTS-RLAP----HGLANKL-GIRSDL---TTLGKYIG-GGMSFGA 297 (454)
T ss_dssp SEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTGG-GGST----TCHHHHH-TCCCSE---EEEEGGGG-TTSSCEE
T ss_pred cccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCcC-CCcc----ccchhcc-CCCCcE---EEeccccC-CCCccee
Confidence 7777778765 677899999999999999999999753 2221 1122222 222222 35899998 7899998
Q ss_pred EEEEecChhHHHHHHHHHHHHh----hccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 013839 282 LSILCVDSKQAAAIRSQIQQIA----RAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNL---- 353 (435)
Q Consensus 282 ~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l---- 353 (435)
+.+ .++ +++.+.... ...+++.++++..++.+.|+.-. + +...+++.++.++|.+.|
T Consensus 298 ~~~---~~e----i~~~~~~~~~~~~h~~T~~gnPla~AAala~L~~l~------~--~~~~~~~~~~g~~l~~~L~~l~ 362 (454)
T 4ao9_A 298 FGG---RAD----VMALFDPRTGPLAHSGTFNNNVMTMAAGYAGLTKLF------T--PEAAGALAERGEALRARLNALC 362 (454)
T ss_dssp EEE---CHH----HHGGGCTTTCSCCCCCTTTTCHHHHHHHHHHHHHTS------C--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred eee---HHH----HHHHHhhccCCccccCCCCCCHHHHHHHHHHHHHHh------c--cChhHHHHHHHHHHHHHHHHHH
Confidence 864 788 776654321 12345566776666666553211 0 122233333444444444
Q ss_pred HhhCCCCCccccccCcceeEec-------------CCCHH----HHHHHhhhccEEEeCCCcEEec-cCCCCcHHHHHHH
Q 013839 354 EKLGSSLNWEHITNQLGMFCFS-------------GLTPY----QVDRLAKEFHIYMTQDGRISMA-GVTTGNVNYLANA 415 (435)
Q Consensus 354 ~~~~~~~~~~~~~~~~g~~~~~-------------~~~~~----~~~~ll~~~gI~i~pggRis~~-~~~~e~i~~~~~~ 415 (435)
++.+.+. .....|.++... ..+.+ +...++ ++||++.|.|++.++ ..|+++|++++++
T Consensus 363 ~~~~~~~---~vrg~G~m~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~ll-~~Gv~~~p~~~~~~s~~~T~~dId~~l~a 438 (454)
T 4ao9_A 363 ANEGVAM---QFTGIGSLMNAHFVQGDVRSSEDLAAVDGRLRQLLFFHLL-NEDIYSSPRGFVVLSLPLTDADIDRYVAA 438 (454)
T ss_dssp HHHTBSC---EEEEETTEEEEESCCSCCCSGGGGTTCCHHHHHHHHHHHH-HTTEECCTTCEEECCTTCCHHHHHHHHHH
T ss_pred hhCCCCE---EEeeeceEEEEEEecCCCCCHHHHHhhhHHHHHHHHHHHH-HCCEEEcCCCCEEEeCCCCHHHHHHHHHH
Confidence 4444321 222334333321 11222 234454 589999999966543 2489999999999
Q ss_pred HHHHHHhhh
Q 013839 416 IHEVTRSEQ 424 (435)
Q Consensus 416 l~~~l~~~~ 424 (435)
|++++.+..
T Consensus 439 l~~~l~~~~ 447 (454)
T 4ao9_A 439 IGSFIGGHG 447 (454)
T ss_dssp HHHHHHHSG
T ss_pred HHHHHHhcc
Confidence 999998754
No 229
>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*
Probab=99.69 E-value=2.4e-16 Score=151.76 Aligned_cols=286 Identities=13% Similarity=0.078 Sum_probs=177.9
Q ss_pred cccHHHHHHHHHhHcCCCCccccCCCeeeEe-cCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhh--HHHHhhCCCCee
Q 013839 92 SVSTKMVEESVKLVYGKDSDVVKEGRSAGVQ-ALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNH--HNIWRDAQIPER 168 (435)
Q Consensus 92 ~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~-t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~--~~~~~~~g~~~~ 168 (435)
.-+.+.|+.+++++...+ +++|+ + |.|||++++++ +..++.+||+|++..-+..+. ...++..| ++.
T Consensus 72 ~~~~~ar~~la~ll~~~~-----~~evi--f~t~~~T~a~n~a--i~~l~~~gd~v~~~~~~~~~~~~~~~a~~~G-~v~ 141 (386)
T 3qm2_A 72 QVAEEAEQDFRDLLNIPS-----NYKVL--FCHGGGRGQFAGV--PLNLLGDKTTADYVDAGYWAASAIKEAKKYC-APQ 141 (386)
T ss_dssp -CCHHHHHHHHHHHTCCT-----TEEEE--EEESCTTHHHHHH--HHHHCTTCCEEEEEESSHHHHHHHHHHTTTS-EEE
T ss_pred HHHHHHHHHHHHHhCCCC-----CceEE--EEcCCchHHHHHH--HHhccCCCCeEEEEeCCHHHHHHHHHHHHhC-CeE
Confidence 456789999999984422 23566 6 68999999998 777788999987554443333 23345677 777
Q ss_pred eeeec-CCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCC-CCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCc
Q 013839 169 TYHYY-DPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVD-PTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLD 246 (435)
Q Consensus 169 ~v~~~-~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~-~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~ 246 (435)
.++.. .+++..+++++++.++. +++++|.+++.+|.||+. .+.+ +|. +|+++++|.+ +.+...+.+
T Consensus 142 ~v~~~~~~~G~~~~~~~~~~~l~---~~t~lV~~~h~et~tG~~i~pi~---~i~-----~g~~~~vDa~-qs~g~~pid 209 (386)
T 3qm2_A 142 IIDAKITVDGKRAVKPMREWQLS---DNAAYLHYCPNETIDGIAIDETP---DFG-----PEVVVTADFS-STILSAPLD 209 (386)
T ss_dssp EEECEEEETTEEEECCGGGCCCC---TTCSCEEECSEETTTTEECCCCC---CCC-----TTCCEEEECT-TTTTSSCCC
T ss_pred EEecCcccCCCCCCchHHHhhcC---CCCcEEEEECCcCCcCEecCchh---hhc-----CCCEEEEEcc-cccCCCCCC
Confidence 77762 02322378888877776 678888888888899996 5554 332 7999999999 444433222
Q ss_pred ccHHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHH-------HHHHHHHHh--hccccCCChhHHHH
Q 013839 247 KDAQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAA-------IRSQIQQIA--RAMYGSPPVHGILL 317 (435)
Q Consensus 247 ~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~-------~~~~l~~~~--~~~~~~~~~~~q~~ 317 (435)
+. + .+ +.+.|..|.+|.+| +|++.+ +++..+. +.+ +...+ .....+++.....+
T Consensus 210 -----v~---~-~~--~~~~s~hK~lGP~G--~g~l~v---~~~~~~~~~~~~p~~~~-~~~~~~~~~~~gTp~v~~i~~ 272 (386)
T 3qm2_A 210 -----VS---R-YG--VIYAGAQKNIGPAG--LTLVIV---REDLLGKAHESCPSILD-YTVLNDNDSMFNTPPTFAWYL 272 (386)
T ss_dssp -----GG---G-CS--EEEEETTTTTCCTT--EEEEEE---EGGGCSCCCTTSCGGGC-HHHHHHC-------CCSHHHH
T ss_pred -----cc---c-cC--EEEEecccccCCCc--cEEEEE---CHHHHhhhcccCCcHHH-HHHHhhcCCCCCCCcHHHHHH
Confidence 11 1 12 45688999999777 577764 4442110 000 01111 11223555566666
Q ss_pred HHHHhCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCc-ce--eEecC--CCHHHHHHHhhhccE
Q 013839 318 VATILSDPNLKSLWID-EVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQL-GM--FCFSG--LTPYQVDRLAKEFHI 391 (435)
Q Consensus 318 ~~~~l~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-g~--~~~~~--~~~~~~~~ll~~~gI 391 (435)
+..+++.-. +. .++...++.+++++++++.|++++............ +. |.+.+ ++.+++.. |+++||
T Consensus 273 l~~Al~~~~-----~~gG~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~~rs~~iv~f~~~~~~~~~~~~~~-L~~~gI 346 (386)
T 3qm2_A 273 SGLVFKWLK-----AQGGVAAMHKINQQKAELLYGVIDNSDFYRNDVAQANRSRMNVPFQLADNTLDKVFLEE-SFAAGL 346 (386)
T ss_dssp HHHHHHHHH-----HHTHHHHHHHHHHHHHHHHHHHHHTCSSEECCBCGGGBCSSEEEEEESSGGGHHHHHHH-HHHTTE
T ss_pred HHHHHHHHH-----HhcCHHHHHHHHHHHHHHHHHHHHHCCCcccCCCHHHcCceEEEEECCCccccHHHHHH-HHHCCC
Confidence 666664221 13 478888899999999999999876310000001111 22 22222 34444455 577899
Q ss_pred EEeCC----C--cEEeccC-CCCcHHHHHHHHHHHHHh
Q 013839 392 YMTQD----G--RISMAGV-TTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 392 ~i~pg----g--Ris~~~~-~~e~i~~~~~~l~~~l~~ 422 (435)
.+.+| | |+|+... +.++++++++.|+++.++
T Consensus 347 ~~~~g~~~~~~iRiS~~~~~t~edId~l~~~l~~~~~~ 384 (386)
T 3qm2_A 347 HALKGHRVVGGMRASIYNAMPIEGVKALTDFMIDFERR 384 (386)
T ss_dssp ECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCcCeEEEEcCCCCCHHHHHHHHHHHHHHHHh
Confidence 99887 3 9998654 789999999999998764
No 230
>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}
Probab=99.68 E-value=1.2e-16 Score=152.91 Aligned_cols=280 Identities=14% Similarity=0.083 Sum_probs=180.4
Q ss_pred cHHHHHHHHHhHcCCCCccccCCCeeeEe-cCCchhHHHHHHHHHHHhCC--CCEEEEcCCCChhh--HHHHhhCCCCee
Q 013839 94 STKMVEESVKLVYGKDSDVVKEGRSAGVQ-ALSGTGACRLFAEFQRRFHP--ESHIYFPDPTWSNH--HNIWRDAQIPER 168 (435)
Q Consensus 94 ~~~lr~~ia~~l~~~~~~~~~~~~v~~~~-t~gg~~a~~~~~~~~~~~~~--gd~Vlv~~p~y~~~--~~~~~~~g~~~~ 168 (435)
+.+.|+.+++++.... +++|+ + +.|||++++++ +..++.+ ||+|++..-++... ...++..|..++
T Consensus 60 ~~~ar~~la~ll~~~~-----~~evi--f~t~~~T~a~n~a--~~~l~~~~~Gd~v~~~~~g~~~~~~~~~a~~~G~~~~ 130 (377)
T 3e77_A 60 INNTENLVRELLAVPD-----NYKVI--FLQGGGCGQFSAV--PLNLIGLKAGRCADYVVTGAWSAKAAEEAKKFGTINI 130 (377)
T ss_dssp HHHHHHHHHHHHTCCT-----TEEEE--EESSHHHHHHHHH--HHHHGGGSTTCEEEECCCSHHHHHHHHHHTTTSEEEE
T ss_pred HHHHHHHHHHHhCCCC-----CCeEE--EEcCchHHHHHHH--HHhccCCCCCCeEEEEECCHHHHHHHHHHHHhCCceE
Confidence 4677888888884322 23566 6 58999999998 6666654 99998776554433 234556777766
Q ss_pred eeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCccc
Q 013839 169 TYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKD 248 (435)
Q Consensus 169 ~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~ 248 (435)
.++. +++++.++++++..+. +++++|.+++..|.||+..+. +|+++|+++++|.+ +.+...+.+
T Consensus 131 ~~~~--~~~~~~~~~~~~~~i~---~~t~lV~~~h~et~tG~~~pi--------i~~~~~~~~~vD~~-q~~g~~~id-- 194 (377)
T 3e77_A 131 VHPK--LGSYTKIPDPSTWNLN---PDASYVYYCANETVHGVEFDF--------IPDVKGAVLVCDMS-SNFLSKPVD-- 194 (377)
T ss_dssp CSCC--CSSSCSCCCGGGCCCC---TTCSCEEEESEETTTTEECSS--------CCCCTTCCEEEECT-TTTTSSCCC--
T ss_pred Eecc--CCCcCCCCChHHhccC---CCccEEEEeCccCchheEchh--------hhccCCCEEEEEcc-cccCCCCCc--
Confidence 6665 3345677777766555 678888888888899999885 37789999999999 444433222
Q ss_pred HHHHHHhhhcCCeEEEEecccccccccCCcccEEEEEecChhHHHH-------HHHHHHHH--hhccccCCChhHHHHHH
Q 013839 249 AQAIRIFLEDEHLIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAA-------IRSQIQQI--ARAMYGSPPVHGILLVA 319 (435)
Q Consensus 249 ~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~-------~~~~l~~~--~~~~~~~~~~~~q~~~~ 319 (435)
+ +..+ +++.|..|.+|.+| +|++++ .++.++. +.+ +... ......+++....+++.
T Consensus 195 ---~----~~~~--~~~~s~~K~~gp~G--~g~l~~---~~~~l~~~~~~~p~~~~-~~~~~~~~~~~~Tp~v~~i~~l~ 259 (377)
T 3e77_A 195 ---V----SKFG--VIFAGAQKNVGSAG--VTVVIV---RDDLLGFALRECPSVLE-YKVQAGNSSLYNTPPCFSIYVMG 259 (377)
T ss_dssp ---G----GGCS--EEEEEGGGTTSCTT--CEEEEE---ETTSCSCCCTTSCGGGC-HHHHHTTTTCSSCCCHHHHHHHH
T ss_pred ---h----hhcC--EEEEecccccCCCc--cEEEEE---cHHHHhhccCCCCchhh-HHHHhhcCCCCCCchHHHHHHHH
Confidence 1 1112 46788999999888 577653 4442110 110 0111 11224456666666666
Q ss_pred HHhCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhCCCCCccccc----cCcce---eEecCCC--H----HHHHHH
Q 013839 320 TILSDPNLKSLWID-EVKIMADRIQRKRTTLRQNLEKLGSSLNWEHIT----NQLGM---FCFSGLT--P----YQVDRL 385 (435)
Q Consensus 320 ~~l~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~----~~~g~---~~~~~~~--~----~~~~~l 385 (435)
.+|+--. +. .++.+.++.+++.+++++.|++++. +.... ...+. |...+++ . .++..+
T Consensus 260 ~al~~l~-----~~GG~~~i~~~~~~l~~~l~~~L~~~~g---~~~~~~~~~~rs~~ivsf~~~~~~~~~~~~~~~l~~l 331 (377)
T 3e77_A 260 LVLEWIK-----NNGGAAAMEKLSSIKSQTIYEIIDNSQG---FYVCPVEPQNRSKMNIPFRIGNAKGDDALEKRFLDKA 331 (377)
T ss_dssp HHHHHHH-----HTTHHHHHHHHHHHHHHHHHHHHHTSTT---SEECCSCGGGBCSSEEEEEESSTTCCHHHHHHHHHHH
T ss_pred HHHHHHH-----HccCHHHHHHHHHHHHHHHHHHHHhcCC---ceecCCCHHHcCCcEEEEEcCCCCCchhHHHHHHHHH
Confidence 6664211 13 4788889999999999999998731 22111 12222 3334542 2 233444
Q ss_pred hhhccEEEeCC----C--cEEeccC-CCCcHHHHHHHHHHHHHh
Q 013839 386 AKEFHIYMTQD----G--RISMAGV-TTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 386 l~~~gI~i~pg----g--Ris~~~~-~~e~i~~~~~~l~~~l~~ 422 (435)
+++||.+.+| | |+|+... +.++++++++.|++++++
T Consensus 332 -~~~Gi~~~~g~~~~g~iRiS~~~~~t~edId~l~~al~~~~~~ 374 (377)
T 3e77_A 332 -LELNMLSLKGHRSVGGIRASLYNAVTIEDVQKLAAFMKKFLEM 374 (377)
T ss_dssp -HHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred -HHCCcEEeCCCCcCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 5689999887 3 9998654 789999999999998765
No 231
>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}
Probab=99.59 E-value=1.6e-13 Score=130.65 Aligned_cols=326 Identities=13% Similarity=0.118 Sum_probs=197.7
Q ss_pred CCeeeeecceecCCCCCcccchHHHHHHHHhcCC-CCCCCCC------Cc---ccHHHHHHHHHhHcCCCCccccCCCee
Q 013839 50 PYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGS-EFLESIS------AS---VSTKMVEESVKLVYGKDSDVVKEGRSA 119 (435)
Q Consensus 50 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Y~~------~~---g~~~lr~~ia~~l~~~~~~~~~~~~v~ 119 (435)
.+.|+|=..+ -..++.+.++......+ ...+||. .. -...|....++.+++.+.. +.-+
T Consensus 54 ~~~ieLIASE-------N~~S~aV~~a~gS~ltnKYaEGyPg~RyYgGce~vD~iE~la~~rak~lF~a~~A----~w~V 122 (490)
T 3ou5_A 54 CRGLELIASE-------NFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPA----QWGV 122 (490)
T ss_dssp HHSEECCTTC-------CCCCHHHHHHHTSGGGTCCCCC----------CHHHHHHHHHHHHHHHHTTCCTT----TEEE
T ss_pred HcCceEecCC-------CcCCHHHHHHhcCcccccccCCCCCccccCCChHHHHHHHHHHHHHHHHhCCCcc----ccCC
Confidence 4566776666 24566667666666522 2223332 22 1234444455666776532 1101
Q ss_pred eEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHH--------hhCC--CCeeeeeecCCCCCCcChHhHHHHh
Q 013839 120 GVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIW--------RDAQ--IPERTYHYYDPDSKSLDFAALMDDI 189 (435)
Q Consensus 120 ~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~--------~~~g--~~~~~v~~~~~~~~~~d~e~l~~~i 189 (435)
-+...+|+.|+..+ ++++++|||+|+..+....+|..-- ...| .+.++|++ +++++.+|.|++++..
T Consensus 123 NVQP~SGs~AN~av--y~All~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~v-d~~t~~IDyd~~~~~A 199 (490)
T 3ou5_A 123 NVQPYSGSPANLAV--YTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKL-NPKTGLIDYNQLALTA 199 (490)
T ss_dssp ECCCSSHHHHHHHH--HHHHCC-CCCEECBC----------------------------CBCE-ETTTTEECHHHHHHHH
T ss_pred CCCcCCHHHHHHHH--HHHHcCCCCEEEecccCCCCcccccccCCCccccccccccccccccc-CCCCCcccHHHHHHHH
Confidence 22578999998888 9999999999999998777664321 1122 25666777 4667889999999988
Q ss_pred hcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccC-CCccCCCCcccHHHHHHhhhcCCeEEEEecc
Q 013839 190 KNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAY-QGFASGDLDKDAQAIRIFLEDEHLIGCAQSY 268 (435)
Q Consensus 190 ~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 268 (435)
.+ .++++|+.....+|--. +++++.++|++.|+++++|.++ .++.-++..++ ++ + .-.++.+|.
T Consensus 200 ~~--~kPklIi~G~SaY~r~i-----d~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~ps--P~----~--~ADvVTtTT 264 (490)
T 3ou5_A 200 RL--FRPRLIIAGTSAYARLI-----DYARMREVCDEVKAHLLADMAHISGLVAAKVIPS--PF----K--HADIVTTTT 264 (490)
T ss_dssp HH--HCCSEEEECCSSCCSCC-----CHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCC--GG----G--TCSEEEEES
T ss_pred hh--cCCCeEEECCccCcccc-----CHHHHHHHHhhcccEEEechhhhhhhhcccccCC--cc----c--cceEEeccc
Confidence 75 45788988766666532 4678899999999999999995 34444432211 22 1 236788999
Q ss_pred cccccccCCcccEEEEEecCh--------------hHHHHHHHHHHHHhhccccCCChhHH-HHHHHHhCChhhHHHHHH
Q 013839 269 AKSMGLYGHRVGCLSILCVDS--------------KQAAAIRSQIQQIARAMYGSPPVHGI-LLVATILSDPNLKSLWID 333 (435)
Q Consensus 269 SK~~g~~G~RvG~~~~~~~~~--------------~~~~~~~~~l~~~~~~~~~~~~~~~q-~~~~~~l~~~~l~~~~~~ 333 (435)
.|++ +|-|-|.+. ++.. + +.+++.+...+...+.|.... .+.+.++.+. ...
T Consensus 265 HKTL--rGPrGG~Il--~~~~~~~~~~k~~~~~~~~----~~kkin~aVFPg~qggp~~h~IAAkAVaf~Ea-----~~p 331 (490)
T 3ou5_A 265 HKTL--RGARSGLIF--YRKGVKAVDPKTGREIPYT----FEDRINFAVFPSLQGGPHNHAIAAVAVALKQA-----CTP 331 (490)
T ss_dssp SSTT--CSCSCEEEE--EECSEEEECC--CCEEECC----CHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHH-----HSH
T ss_pred cccc--cCCCceEEE--eccccccccccccchhHHH----HHHHHHhhcCccccccchHHHHHHHHHHHHHH-----HhH
Confidence 9997 788988774 5332 4 666777766544444333333 3333334321 224
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeE-ec-----CCCHHHHHHHhhhccEEEe----CC-------
Q 013839 334 EVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFC-FS-----GLTPYQVDRLAKEFHIYMT----QD------- 396 (435)
Q Consensus 334 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~-~~-----~~~~~~~~~ll~~~gI~i~----pg------- 396 (435)
..+.+.++..++.+.|.+.|.+.|+ ++.....-.++ ++ +++...++++|++.||.+- |+
T Consensus 332 ~fk~Ya~qVv~NAkaLA~~L~~~G~----~vvsGgTdnHlvLvDl~~~g~tG~~ae~~Le~agItvNkN~iP~D~sp~~~ 407 (490)
T 3ou5_A 332 MFREYSLQVLKNARAMADALLERGY----SLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITP 407 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC----EEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEEECCTTCCCSSSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCC----eeecCCCCceEEEEeccccCCCHHHHHHHHHHcCcEECCCCCCCCCCCCCC
Confidence 4567778888889999999999885 34432222233 22 5577889889999999885 32
Q ss_pred -C-cEEec-----cCCCCcHHHHHHHHHHHHH
Q 013839 397 -G-RISMA-----GVTTGNVNYLANAIHEVTR 421 (435)
Q Consensus 397 -g-Ris~~-----~~~~e~i~~~~~~l~~~l~ 421 (435)
| ||+.. ++.+++++++.+-|.+++.
T Consensus 408 SGiRiGTpa~TtRG~~e~dm~~IA~~I~~~l~ 439 (490)
T 3ou5_A 408 GGLRLGAPALTSRQFREDDFRRVVDFIDEGVN 439 (490)
T ss_dssp SEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CeeEECCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 3 88742 3577888888888887764
No 232
>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*
Probab=99.58 E-value=1.6e-13 Score=134.75 Aligned_cols=343 Identities=12% Similarity=-0.005 Sum_probs=191.8
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcC--CCCCCCCCCcccHHHHHHHHHhHcCCCCccccCCCeeeEecC
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAG--SEFLESISASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQAL 124 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t~ 124 (435)
.+++..||+..|.-...-|. ..+++++++.+++.. .....+.+.....+|.+.+++..-+.. .+.+. +++
T Consensus 61 ~dG~~ylD~~~g~~~~~lGh-~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~-----~~~v~--f~~ 132 (456)
T 4atq_A 61 VDGNSFIDLGSGIAVTSVGA-SDPAVVAAVQEAAAHFTHTCFMVTPYEGYVAVTEQLNRLTPGDH-----AKRTV--LFN 132 (456)
T ss_dssp TTSCEEEESSHHHHTCTTCT-TCHHHHHHHHHHHHHCSCCTTTTSCCHHHHHHHHHHHHHSSCSS-----CEEEE--EES
T ss_pred CCCCEEEEccccHHHHhcCC-CCHHHHHHHHHHHhhccCcccCccCcHHHHHHHHHHHHhCCCCC-----CcEEE--EeC
Confidence 46678888877742111121 122333333333331 112223333444566666766653222 23566 789
Q ss_pred CchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHh-hCCC-------------CeeeeeecC----CCCCCcChHhHH
Q 013839 125 SGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWR-DAQI-------------PERTYHYYD----PDSKSLDFAALM 186 (435)
Q Consensus 125 gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~-~~g~-------------~~~~v~~~~----~~~~~~d~e~l~ 186 (435)
+|++|++.+..+........+|+....+|.+...... ..+- .+..+|... .....-+.+.++
T Consensus 133 sGsEA~e~AlklAr~~t~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 212 (456)
T 4atq_A 133 SGAEAVENAVKVARLATGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAK 212 (456)
T ss_dssp SHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHH
T ss_pred ChHHHHHHHHHHHhhhhcCCeEEEEecccCCccccccccccCccccccCCCCccccceecccccccccCCCcccHHHHHH
Confidence 9999999998766655556889999999977643222 1111 122233210 011111223333
Q ss_pred HHhh---c--CCCCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCC
Q 013839 187 DDIK---N--APDSSFFLLHPSAHNPTGVDP-TEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEH 260 (435)
Q Consensus 187 ~~i~---~--~~~~~~~v~~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~ 260 (435)
+.+. + .+++..++++...+.-.|.+. +++.+++|.++|++||+++|.||+..+|.-.+. .+....+ +...
T Consensus 213 ~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~---~~a~e~~-gv~P 288 (456)
T 4atq_A 213 RAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGE---WFAVDHE-GVVP 288 (456)
T ss_dssp HHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS---SSGGGGT-TCCC
T ss_pred HHHHHHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHHhhcCCceEecccccccCCccc---ccccccc-CCCC
Confidence 2222 1 134678888877677777764 677899999999999999999999888765431 1222222 2222
Q ss_pred eEEEEecccccccccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHH
Q 013839 261 LIGCAQSYAKSMGLYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMAD 340 (435)
Q Consensus 261 ~~i~~~s~SK~~g~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~ 340 (435)
. | -+++|.+| .|..+|.+++ .++ +.+.+.......+++.++++..++.+.|+.-. + +...+
T Consensus 289 D-i--vt~gK~lg-gg~P~~av~~---~~~----i~~~~~~~~~~~Tf~gnpla~aaala~L~~i~------~--~~l~~ 349 (456)
T 4atq_A 289 D-I--ITMAKGIA-GGLPLSAITG---RAD----LLDAVHPGGLGGTYGGNPVACAAALAAIDTME------Q--HDLNG 349 (456)
T ss_dssp S-E--EEECGGGG-TTSSCEEEEE---EHH----HHTTSCTTSSCCSSSSCHHHHHHHHHHHHHHH------H--TTHHH
T ss_pred c-h--hhhhhccc-CcCCceeeEe---cHH----HHhcccccCCCCCCCCChHHHHhhHHHHHHHh------h--ccHHH
Confidence 2 2 34789988 8899998864 677 66666544445567777787777777664211 1 12333
Q ss_pred HHHHHHHHHHHHHHhh----CCC--CCccccccCcceeEecCC--------CH----HHHHHHhhhccEEEeCCC-----
Q 013839 341 RIQRKRTTLRQNLEKL----GSS--LNWEHITNQLGMFCFSGL--------TP----YQVDRLAKEFHIYMTQDG----- 397 (435)
Q Consensus 341 ~~~~~~~~l~~~l~~~----~~~--~~~~~~~~~~g~~~~~~~--------~~----~~~~~ll~~~gI~i~pgg----- 397 (435)
+.++.-+++.+.|+++ +.. ..+..+...| ++.-+.+ +. .....+ .++|+.+.+.|
T Consensus 350 ~~~~~g~~l~~~L~~l~~~~~~~~~~~v~~VRG~G-l~~giel~~~~~~~~~~~~~~~v~~~~-~~~Gvl~~~~g~~~~~ 427 (456)
T 4atq_A 350 RARHIEELALGKLRELAAELSAGGGSVVGDIRGRG-AMLAIELVQPGSKEPNAELTKAVAAAC-LKEGVIILTCGTYGNV 427 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-----CEEEEEEET-TEEEEEEBCTTSCCBCHHHHHHHHHHH-HHTTEECEEECTTSCE
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCceEEeeecc-eEEEEEEecCCCCCcCHHHHHHHHHHH-HHCCCEEEecCCCCCE
Confidence 4444444455444433 110 0011122233 3332221 12 233444 46899998654
Q ss_pred -cEEec-cCCCCcHHHHHHHHHHHHHh
Q 013839 398 -RISMA-GVTTGNVNYLANAIHEVTRS 422 (435)
Q Consensus 398 -Ris~~-~~~~e~i~~~~~~l~~~l~~ 422 (435)
||... ..+++++++++++|.++++.
T Consensus 428 irl~PpL~it~~~id~~l~~l~~al~a 454 (456)
T 4atq_A 428 IRLLPPLVISDELLIDGLEVLAAAIKA 454 (456)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 66542 34889999999999998864
No 233
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Probab=99.54 E-value=4.5e-13 Score=128.14 Aligned_cols=280 Identities=13% Similarity=0.112 Sum_probs=165.5
Q ss_pred ecCCchhHHHHHHHHHHHhCC---C-CEEEEcCCCChhhHHHHhhCCCCeeeeee-cCCCCCCcChHhHHHHhhcCCCCc
Q 013839 122 QALSGTGACRLFAEFQRRFHP---E-SHIYFPDPTWSNHHNIWRDAQIPERTYHY-YDPDSKSLDFAALMDDIKNAPDSS 196 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~~~---g-d~Vlv~~p~y~~~~~~~~~~g~~~~~v~~-~~~~~~~~d~e~l~~~i~~~~~~~ 196 (435)
+++|+|++...+ +++.+.+ | |.|+++..++......+...|+++++++. .+++..++|++.+++++++.+...
T Consensus 139 lVnGsTgg~lam--ilaa~r~~rpg~d~VIvpRn~HKSv~kAliL~Gl~Pv~V~p~~d~~~~~id~e~le~aI~e~ga~~ 216 (501)
T 3hl2_A 139 VVPMATGMSLTL--CFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAGFEPVVIENVLEGDELRTDLKAVEAKVQELGPDC 216 (501)
T ss_dssp EESSCHHHHHHH--HHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECEEEETTEEEECHHHHHHHHHHHCGGG
T ss_pred EECcHHHHHHHH--HHHHcCcccCCCCEEEEecchHHHHHHHHHHcCCeEEEEeeeecccccCCCHHHHHHHHHhcCCCc
Confidence 688999776666 5556653 4 99999999999999999999999999854 233457899999999998764344
Q ss_pred EEEEeC-CCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHhhhcCCeEEEEeccccccccc
Q 013839 197 FFLLHP-SAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIFLEDEHLIGCAQSYAKSMGLY 275 (435)
Q Consensus 197 ~~v~~~-~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~ 275 (435)
.++++. .++|-.+. .+++++|+++|++||+++++|+||...... ... -.......+.-++++.|..|.+-.+
T Consensus 217 i~~V~~Ttt~y~p~~---~ddI~eIaeIch~~gIpllVDeAhGah~~~---~~~-lp~sA~~~GrAD~vVqS~HK~llvp 289 (501)
T 3hl2_A 217 ILCIHSTTSCFAPRV---PDRLEELAVICANYDIPHIVNNAYGVQSSK---CMH-LIQQGARVGRIDAFVQSLDKNFMVP 289 (501)
T ss_dssp EEEEEEECSCCTTBC---CCCHHHHHHHHHHHTCCEEEECTTCTTCHH---HHH-HHHHHHHHSCCCEEEEEHHHHHCCC
T ss_pred EEEEEecCCCCCCcc---cccHHHHHHHHHHcCCeEEEeCcchhhhhh---hhh-hHHHHHhcCCCcEEEecccccceee
Confidence 444443 33442222 357889999999999999999998554311 001 1111222233567899999997544
Q ss_pred CCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 013839 276 GHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNLEK 355 (435)
Q Consensus 276 G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 355 (435)
+. |.++ ...+++ +++++.........+.+.+...++ .+.-+. +..++..++..++.++|.+.|++
T Consensus 290 -IG-G~ii-~~~d~e----~l~~~~~~yPGr~S~Spsldl~~t--LL~lGr------~Gy~~ll~e~~ela~~L~~~L~~ 354 (501)
T 3hl2_A 290 -VG-GAII-AGFNDS----FIQEISKMYPGRASASPSLDVLIT--LLSLGS------NGYKKLLKERKEMFSYLSNQIKK 354 (501)
T ss_dssp -SS-CEEE-EESCHH----HHHHHHHTSCSCBCSHHHHHHHHH--HHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -cC-ceEE-EeCCHH----HHHHHHHhCCCCCCCcHHHHHHHH--HHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 4454 255666 555553321111122222322333 332221 44566666677777777777766
Q ss_pred hCCCCCccccc---cCcceeEecC-C------CHHHHHHHhhhcc---EEEeCCC-----------------------cE
Q 013839 356 LGSSLNWEHIT---NQLGMFCFSG-L------TPYQVDRLAKEFH---IYMTQDG-----------------------RI 399 (435)
Q Consensus 356 ~~~~~~~~~~~---~~~g~~~~~~-~------~~~~~~~ll~~~g---I~i~pgg-----------------------Ri 399 (435)
+....+-+.+. ...++-+.+. + +..++-.+|-..+ --+.+.| -+
T Consensus 355 la~~~ge~ll~~~~n~is~a~tl~~~~~~~~~~~t~~gs~Lf~r~vsG~Rvv~~~~~~~i~g~~f~~~g~h~~~~~~~yl 434 (501)
T 3hl2_A 355 LSEAYNERLLHTPHNPISLAMTLKTLDEHRDKAVTQLGSMLFTRQVSGARVVPLGSMQTVSGYTFRGFMSHTNNYPCAYL 434 (501)
T ss_dssp HHHTTTCCBCCCTTCSSEEEEECTTSCTTTSCHHHHHHHHHHHTTCCSCEEECTTCCEEETTEEESSTTTTSSCCSSCEE
T ss_pred HHHhcChhhcCCCCCceeEEEecccccccccccHHHHHHHHHhcCCCcceeecCCCceEECCeeecCcccCCCCCCchHH
Confidence 42110112222 2222222222 2 1234544444343 3343321 23
Q ss_pred Eec---cCCCCcHHHHHHHHHHHHHhhhh
Q 013839 400 SMA---GVTTGNVNYLANAIHEVTRSEQE 425 (435)
Q Consensus 400 s~~---~~~~e~i~~~~~~l~~~l~~~~~ 425 (435)
+.+ +++.+|++.++++|.+++.+.+.
T Consensus 435 ~~a~aiG~~~~~v~~~~~~l~~~~~~~~~ 463 (501)
T 3hl2_A 435 NAASAIGMKMQDVDLFIKRLDRCLKAVRK 463 (501)
T ss_dssp EEECCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 221 35889999999999999977653
No 234
>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A
Probab=99.51 E-value=4.1e-12 Score=125.17 Aligned_cols=346 Identities=10% Similarity=0.066 Sum_probs=192.8
Q ss_pred CCCCCeeeeecceecCCCCCcccchHHHHHHHHhcCC-CC-CCCCC-CcccHHHHHHHHHhHcCCCCccccCCCeeeEec
Q 013839 47 DPSPYKINLGVGAYRDDKGRPVVLQCVREAEAKIAGS-EF-LESIS-ASVSTKMVEESVKLVYGKDSDVVKEGRSAGVQA 123 (435)
Q Consensus 47 ~~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~Y~~-~~g~~~lr~~ia~~l~~~~~~~~~~~~v~~~~t 123 (435)
.+++..||+..|.....-|.. .+++++++.+++... .. ..+.. ..-.-+|-+.|++... .+ -+++. ++
T Consensus 64 ~dG~~ylD~~~g~~~~~lGh~-~p~v~~Ai~~q~~~l~~~~~~~~~~~~~~~~lAe~L~~~~p-~~-----~~~v~--f~ 134 (473)
T 4e3q_A 64 VNGRRYLDANSGLWNMVAGFD-HKGLIDAAKAQYERFPGYHAFFGRMSDQTVMLSEKLVEVSP-FD-----SGRVF--YT 134 (473)
T ss_dssp TTCCEEEETTTTTTTCTTCSC-CHHHHHHHHHHHHHCCCCCCCTTEEEHHHHHHHHHHHHHSS-CS-----SCEEE--EE
T ss_pred CCCCEEEEcccCHHHhhccCC-CHHHHHHHHHHHHhcccccccccccCHHHHHHHHHHHhhCC-CC-----ccEEE--Ee
Confidence 356778888777531212221 233444444444321 01 11111 1112234445544431 11 24677 89
Q ss_pred CCchhHHHHHHHHHHHh-----CCC-CEEEEcCCCChhhHHHH-hhCCC-----------CeeeeeecC----CCCCC--
Q 013839 124 LSGTGACRLFAEFQRRF-----HPE-SHIYFPDPTWSNHHNIW-RDAQI-----------PERTYHYYD----PDSKS-- 179 (435)
Q Consensus 124 ~gg~~a~~~~~~~~~~~-----~~g-d~Vlv~~p~y~~~~~~~-~~~g~-----------~~~~v~~~~----~~~~~-- 179 (435)
++|++|++.+.++.... .++ .+|+...-+|.+..... ...|- ....++..+ .....
T Consensus 135 ~sGsEA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 214 (473)
T 4e3q_A 135 NSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETE 214 (473)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTTEEEECCCCHHHHSCTTCCH
T ss_pred CchHHHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCccccccccccccccccCCCCCcccccCCCcccccccccchh
Confidence 99999999997554332 233 57888888887653322 21111 111121100 00000
Q ss_pred -----cChHhHHHHhhcC-CCCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHH
Q 013839 180 -----LDFAALMDDIKNA-PDSSFFLLHPSAHNPTGVDP-TEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAI 252 (435)
Q Consensus 180 -----~d~e~l~~~i~~~-~~~~~~v~~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~ 252 (435)
...+++++.+.+. ++...+|++...+.-.|++. +++.+++|.++|++||+++|.||+..+|+-.+. .+..
T Consensus 215 ~~~~~~~~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfGRtG~---~fa~ 291 (473)
T 4e3q_A 215 EQFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGN---TWGC 291 (473)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSSTTSS---SCHH
T ss_pred hHHHHHHHHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCccccCCcccc---hhHH
Confidence 0123455555432 34567888877777778765 567899999999999999999999988865431 2233
Q ss_pred HHhhhcCCeEEEEecccccccccC-CcccEEEEEecChhHHHHHHHHHHHHh-------hccccCCChhHHHHHHHHhCC
Q 013839 253 RIFLEDEHLIGCAQSYAKSMGLYG-HRVGCLSILCVDSKQAAAIRSQIQQIA-------RAMYGSPPVHGILLVATILSD 324 (435)
Q Consensus 253 ~~~~~~~~~~i~~~s~SK~~g~~G-~RvG~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~~q~~~~~~l~~ 324 (435)
..+ +....++ +++|.++ .| +.+|.+++ .++ +.+.+.... ...+++.++++..++.+.|+.
T Consensus 292 e~~-gv~PDi~---t~~K~l~-gG~~Pl~av~~---~~~----i~~~~~~~~~~~~~~~hg~T~~Gnpla~Aaala~L~~ 359 (473)
T 4e3q_A 292 VTY-DFTPDAI---ISSKNLT-AGFFPMGAVIL---GPE----LSKRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDV 359 (473)
T ss_dssp HHT-TCCCSEE---EECGGGG-TTSSCCEEEEE---CHH----HHHHHHHHHHHHSCCCCCCTTTTCHHHHHHHHHHHHH
T ss_pred Hhc-CCCCChH---Hhccccc-CCCCCcccccc---cHH----HHHHhccccccccccccCCCCCCCcchhhhhhhhhhh
Confidence 333 2222233 4799998 55 89998864 888 666554321 133556667766666666642
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccccccCcceeEec---C------CC-----HHHHHHHhhhcc
Q 013839 325 PNLKSLWIDEVKIMADRIQRKRTTLRQNLEKLGSSLNWEHITNQLGMFCFS---G------LT-----PYQVDRLAKEFH 390 (435)
Q Consensus 325 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~---~------~~-----~~~~~~ll~~~g 390 (435)
-. -+...++.++..++|.+.|+++.-...+......|-++.+- + .+ .+.+...+.++|
T Consensus 360 i~--------~~~l~~~~~~~g~~l~~~L~~l~~~~~v~~vRG~Gl~~gielv~~~~~~~~~~~~~~~~~~~~~~~~~~G 431 (473)
T 4e3q_A 360 VM--------NEGLAENVRRLAPRFEERLKHIAERPNIGEYRGIGFMWALEAVKDKASKTPFDGNLSVSERIANTCTDLG 431 (473)
T ss_dssp HH--------HSSHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTT
T ss_pred hc--------cccHHHHHHHHHHHHHHHHHHHhcCCCeeEEeecceEEEEEEecCccccccccccHHHHHHHHHHHHHCC
Confidence 11 12344556666677777777663211122223333322221 0 11 233434445689
Q ss_pred EEEeCCC---cEEec-cCCCCcHHHHHHHHHHHHHhhh
Q 013839 391 IYMTQDG---RISMA-GVTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 391 I~i~pgg---Ris~~-~~~~e~i~~~~~~l~~~l~~~~ 424 (435)
+.+.|.| ||+.. ..+++++++++++|.+++++..
T Consensus 432 ll~~~~g~~i~l~PPL~it~~eid~~~~~l~~al~~v~ 469 (473)
T 4e3q_A 432 LICRPLGQSVVLCPPFILTEAQMDEMFDKLEKALDKVF 469 (473)
T ss_dssp EECEEETTEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEecCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999988 66532 3488999999999999998754
No 235
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Probab=99.43 E-value=5.3e-11 Score=115.28 Aligned_cols=211 Identities=13% Similarity=0.040 Sum_probs=124.8
Q ss_pred EecCCchhHHHHHHHHHHHhC----CCCEEEEcCCCChhhHHHHhhCCCCeeeeeec-CCCCCCcChHhHHHHhhcCC-C
Q 013839 121 VQALSGTGACRLFAEFQRRFH----PESHIYFPDPTWSNHHNIWRDAQIPERTYHYY-DPDSKSLDFAALMDDIKNAP-D 194 (435)
Q Consensus 121 ~~t~gg~~a~~~~~~~~~~~~----~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~-~~~~~~~d~e~l~~~i~~~~-~ 194 (435)
.+++|+|++..++ .++.++ +|+.|+++.-++......+...|+.++.++.. +++.+.+|++.+++++++.+ +
T Consensus 120 ~lV~GaT~~~~a~--~L~aar~~~~~~~~viv~r~aHkSv~kAl~l~Gl~p~~v~~~~~~~~~~id~~~le~aI~~~~~~ 197 (450)
T 3bc8_A 120 FVVPMATGMSLTL--CFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPE 197 (450)
T ss_dssp EEESSCHHHHHHH--HHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHCGG
T ss_pred EEECCHHHHHHHH--HHHHcchhhcCCCEEEEECCcHHHHHHHHHHcCCeeEEEEeeecCccCCcCHHHHHHHHHhcCCC
Confidence 4788988554444 333333 38999999999999999999999998887442 23457899999999998654 2
Q ss_pred CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHH-HhhhcCCeEEEEeccccccc
Q 013839 195 SSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIR-IFLEDEHLIGCAQSYAKSMG 273 (435)
Q Consensus 195 ~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~s~SK~~g 273 (435)
.+.+|+.+..+|.+|. .+++++|+++|++||+++++|+||...... ...+. .......-+.++.|..|.+.
T Consensus 198 ~~~~Vv~t~t~~g~g~---~ddl~~Ia~ia~~~gi~l~VD~A~G~~~~~-----~~~l~~~a~~~~~AD~~v~S~HK~l~ 269 (450)
T 3bc8_A 198 HILCLHSTTACFAPRV---PDRLEELAVICANYDIPHVVNNAYGLQSSK-----CMHLIQQGARVGRIDAFVQSLDKNFM 269 (450)
T ss_dssp GEEEEEEESSCCTTBC---CCCHHHHHHHHHHHTCCEEEECTTTTTCHH-----HHHHHHHHHHHSCCCEEEEEHHHHHS
T ss_pred CEEEEEEECCcCCCce---ecCHHHHHHHHHHCCCeEEEECCCchhhhh-----hHhHHHHHhcccCCCEEEECCccCCC
Confidence 3344444333333443 356889999999999999999998653311 11111 11111234567889999976
Q ss_pred ccCCcccEEEEEecChhHHHHHHHHHHHHhhccccCCChhHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013839 274 LYGHRVGCLSILCVDSKQAAAIRSQIQQIARAMYGSPPVHGILLVATILSDPNLKSLWIDEVKIMADRIQRKRTTLRQNL 353 (435)
Q Consensus 274 ~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l 353 (435)
.+ ...+++. ..+++ ..+++... +.......++.......+..+. +...+..++..+..+++.+.+
T Consensus 270 a~-~~~~~l~--~rd~~----~~~~~~~~--~~g~~s~SpsL~l~~~l~~~G~------~g~~~~i~~~~~~a~~l~~~l 334 (450)
T 3bc8_A 270 VP-VGGAIIA--GFNEP----FIQDISKM--YPGRASASPSLDVLITLLSLGC------SGYRKLLKERKEMFVYLSTQL 334 (450)
T ss_dssp CC-SSCEEEE--ESCHH----HHHHHHHH--SCSCBCSHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
T ss_pred ch-hccEEEE--ecCHH----HHHHHHHH--hhcCCcccHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 43 3334443 34666 44444332 1111222333333333332221 333444444555566666666
Q ss_pred Hhh
Q 013839 354 EKL 356 (435)
Q Consensus 354 ~~~ 356 (435)
+++
T Consensus 335 ~~~ 337 (450)
T 3bc8_A 335 KKL 337 (450)
T ss_dssp HHH
T ss_pred Hhh
Confidence 554
No 236
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=99.43 E-value=5.4e-13 Score=140.13 Aligned_cols=219 Identities=11% Similarity=0.069 Sum_probs=131.9
Q ss_pred HhHHHHhhc-----CCCCcEEEEeCCC-CCCCCCCC-CHHHHHHHHHHHHhcCceeeeeccCCCccCCCCcccHHHHHHh
Q 013839 183 AALMDDIKN-----APDSSFFLLHPSA-HNPTGVDP-TEEQWREISYQFKVKGHFPFFDMAYQGFASGDLDKDAQAIRIF 255 (435)
Q Consensus 183 e~l~~~i~~-----~~~~~~~v~~~~p-~NPtG~~~-~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~~~~~~~~~~~~~ 255 (435)
+.|++.+++ .+.++.+|++... ++..|... +++.+++|.++|++||+++|+||++.+|+..+. .+....+
T Consensus 577 ~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~---~fa~e~~ 653 (831)
T 4a0g_A 577 AYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGV---ETTTELL 653 (831)
T ss_dssp HHHHHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSB---SSTHHHH
T ss_pred HHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCC---chhhHhc
Confidence 567777652 2356778888764 78888876 788899999999999999999999998876542 1122222
Q ss_pred hhcCCeEEEEecccccccccC-CcccEEEEEecChhHHHHHHHHHHHHh------hccccCCChhHHHHHHHHhCC---h
Q 013839 256 LEDEHLIGCAQSYAKSMGLYG-HRVGCLSILCVDSKQAAAIRSQIQQIA------RAMYGSPPVHGILLVATILSD---P 325 (435)
Q Consensus 256 ~~~~~~~i~~~s~SK~~g~~G-~RvG~~~~~~~~~~~~~~~~~~l~~~~------~~~~~~~~~~~q~~~~~~l~~---~ 325 (435)
+...++ .++||.++ .| +++|++++ +++ +++.+.... ...+.+.+++++.++.+.|+. .
T Consensus 654 -gv~PDi---itlsK~L~-gG~~Plgav~~---~~~----i~~~~~~~~~~~~~~hg~T~~g~Pla~Aaala~L~~i~~~ 721 (831)
T 4a0g_A 654 -GCKPDI---ACFAKLLT-GGMVPLAVTLA---TDA----VFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDP 721 (831)
T ss_dssp -SSCCSE---EEECGGGG-TTSSCCEEEEE---CHH----HHHTTCSSCGGGSCCCCCTTTTCHHHHHHHHHHHHHHHCT
T ss_pred -CCCCcE---EEEecccc-cCccCcEEEEE---CHH----HHHHHhcccccccceeecCCcccHHHHHHHHHHHHHHHhh
Confidence 222233 36999998 57 79999974 888 777665421 223456677777776666531 1
Q ss_pred hhHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhCCCCCccccccCcceeEecCC--C----------HHHHHHHhhhccEE
Q 013839 326 NLKSLWIDEVKIMADRIQR-KRTTLRQNLEKLGSSLNWEHITNQLGMFCFSGL--T----------PYQVDRLAKEFHIY 392 (435)
Q Consensus 326 ~l~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~--~----------~~~~~~ll~~~gI~ 392 (435)
++. +.+.+..+++++ ..+.+.+.+++.+. +......| .+..+.+ + ...+...+.++||.
T Consensus 722 ~l~----~~~~~~~~~l~~~l~~~l~~~l~~~~~---v~~vrg~G-l~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gv~ 793 (831)
T 4a0g_A 722 ETN----HNITSQGKTLRELWDEELVQQISSHSA---VQRVVVIG-TLFALELKADASNSGYASLYAKSLLIMLREDGIF 793 (831)
T ss_dssp TTC----TTBCTTSSBBCCCSCHHHHHHHHHSTT---EEEEEEET-TEEEEEEC---------CHHHHHHHHHHHHTTEE
T ss_pred HHH----HHHHHHHHHHHHHHHHHHHHHHhhCCC---ceeEeecc-cEEEEEEecCccccccchHHHHHHHHHHHHCCcE
Confidence 110 111111111111 01234445555542 33333334 3443322 1 12343334568999
Q ss_pred EeCCC---cEEe-ccCCCCcHHHHHHHHHHHHHhhh
Q 013839 393 MTQDG---RISM-AGVTTGNVNYLANAIHEVTRSEQ 424 (435)
Q Consensus 393 i~pgg---Ris~-~~~~~e~i~~~~~~l~~~l~~~~ 424 (435)
+.|.| ||+. ...++++|++++++|.++++++.
T Consensus 794 v~p~g~~lrl~pp~~~t~e~id~~~~~l~~~l~~l~ 829 (831)
T 4a0g_A 794 TRPLGNVIYLMCGPCTSPEICRRLLTKLYKRLGEFN 829 (831)
T ss_dssp CCCBTTEEEEECCTTCCHHHHHHHHHHHHHHHTTTC
T ss_pred EEecCCEEEEECCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 99987 7763 23489999999999999987653
No 237
>3gh5_A HEX1, beta-hexosaminidase; beta-N-acetylhexosaminidase, glycosphingolipids, paenibacill GH20, hydrolase, structural genomics, NPPSFA; HET: NAG; 1.60A {Paenibacillus SP} PDB: 3gh4_A* 3gh7_A* 3sur_A* 3sus_A* 3sut_A* 3suu_A* 3suv_A* 3suw_A*
Probab=77.34 E-value=16 Score=35.85 Aligned_cols=70 Identities=14% Similarity=0.058 Sum_probs=46.0
Q ss_pred HHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeee
Q 013839 157 HNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFF 233 (435)
Q Consensus 157 ~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~ 233 (435)
.+.+..++++.....+.|..+|.+..+..-+.-... ..+ ....+.|-.+|++|+++|++.|+++++-||=
T Consensus 205 id~mA~~KlN~lH~HltDdqgwriei~~~P~Lt~~G-a~~------~~~~~~~g~YT~~di~eIv~YA~~rgI~VIP 274 (525)
T 3gh5_A 205 IDLASQYKINKFHMHLSDDQGWRIEIKSWPDLIEIG-SKG------QVGGGPGGYYTQEQFKDIVSYAAERYIEVIP 274 (525)
T ss_dssp HHHHHTTTCCEEEEECBCSSCBCBCCTTSTHHHHTT-TSC------CTTSSCCCCBCHHHHHHHHHHHHTTTCEEEE
T ss_pred HHHHHHcCCcEEEEEeccCCccccccccchhhhhcc-Ccc------ccCCCCCCCcCHHHHHHHHHHHHHcCCEEEE
Confidence 344557788888888877666777665544432211 110 0112235578999999999999999988775
No 238
>1jak_A Beta-N-acetylhexosaminidase; glycoside hydrolase, family 20, substrate-assisted catalysis, alpha/beta barrel, isofagomin inhibitor complex; HET: IFG; 1.75A {Streptomyces plicatus} SCOP: c.1.8.6 d.92.2.1 PDB: 1hp4_A* 1hp5_A* 1m01_A* 1m04_A* 1m03_A*
Probab=76.66 E-value=14 Score=36.10 Aligned_cols=69 Identities=10% Similarity=-0.025 Sum_probs=45.2
Q ss_pred HHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeee
Q 013839 158 NIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFF 233 (435)
Q Consensus 158 ~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~ 233 (435)
+.+..++++.....+.|..+|.+..+..-+.-... ..+ ....+.|-.+|++++++|++.|+++++-||-
T Consensus 181 d~ma~~KlN~lh~HltDdq~wriei~~~P~Lt~~g-a~~------~~~~~~~g~YT~~di~eiv~yA~~rgI~VIP 249 (512)
T 1jak_A 181 DRVARYKYNKLHLHLSDDQGWRIAIDSWPRLATYG-GST------EVGGGPGGYYTKAEYKEIVRYAASRHLEVVP 249 (512)
T ss_dssp HHHHTTTCCEEEEECBCSSCBCBCCTTSTHHHHTT-TSC------CTTSSCCCCBCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHcCCcEEEEEeccCCCceehhhhhHHHHhhc-Ccc------ccCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 34456788888888766666777655544332211 111 1112235678999999999999999998875
No 239
>2gjx_A Beta-hexosaminidase alpha chain; beta-hexosaminidase A, glycosidase, TAY-sachs disease, GM2 ganglisode, TIM barrel, hydrolase; HET: NAG BMA NDG; 2.80A {Homo sapiens} SCOP: c.1.8.6 d.92.2.1 PDB: 2gk1_A*
Probab=74.73 E-value=11 Score=36.74 Aligned_cols=65 Identities=12% Similarity=0.118 Sum_probs=43.1
Q ss_pred HHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeee
Q 013839 158 NIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFF 233 (435)
Q Consensus 158 ~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~ 233 (435)
+.+..+++++....+.|+.+|.+..+..-+.-... . ..|.+-.+|++|+++|++.|+++++-||-
T Consensus 169 d~mA~~KlN~lh~HltDdq~wr~ei~~~P~Lt~~G-a----------~~~~~~~YT~~di~eiv~yA~~rgI~VIP 233 (507)
T 2gjx_A 169 DVMAYNKLNVFHWHLVDDPSFPYESFTFPELMRKG-S----------YNPVTHIYTAQDVKEVIEYARLRGIRVLA 233 (507)
T ss_dssp HHHHHTTCCEEEEECCCSSCCCBCCSSCTHHHHHH-S----------SCTTTSCBCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHhCCceEEEEEecccCeeeeccccchhhhcc-c----------cCCCCCCcCHHHHHHHHHHHHHcCCEEEE
Confidence 34557788888888766666666544322221100 0 12445678999999999999999988874
No 240
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}
Probab=65.63 E-value=23 Score=31.36 Aligned_cols=100 Identities=13% Similarity=0.038 Sum_probs=57.9
Q ss_pred CCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhc---C
Q 013839 116 GRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKN---A 192 (435)
Q Consensus 116 ~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~---~ 192 (435)
++++ ++.|++.++=... ...+...|-+|++.+-.-.......+..|.+...+.. |-. |.+++++.+++ .
T Consensus 29 gKva--lVTGas~GIG~ai-A~~la~~Ga~V~i~~r~~~~l~~~~~~~g~~~~~~~~-Dv~----~~~~v~~~~~~~~~~ 100 (273)
T 4fgs_A 29 AKIA--VITGATSGIGLAA-AKRFVAEGARVFITGRRKDVLDAAIAEIGGGAVGIQA-DSA----NLAELDRLYEKVKAE 100 (273)
T ss_dssp TCEE--EEESCSSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHHHHCTTCEEEEC-CTT----CHHHHHHHHHHHHHH
T ss_pred CCEE--EEeCcCCHHHHHH-HHHHHHCCCEEEEEECCHHHHHHHHHHcCCCeEEEEe-cCC----CHHHHHHHHHHHHHH
Confidence 3555 5666666665543 3335668988887764444445556667777777765 222 44555544432 2
Q ss_pred CCCcEEEEeCCCCCCCCC--CCCHHHHHHHHHH
Q 013839 193 PDSSFFLLHPSAHNPTGV--DPTEEQWREISYQ 223 (435)
Q Consensus 193 ~~~~~~v~~~~p~NPtG~--~~~~~~l~~i~~~ 223 (435)
-.+..+++.+...++.+. .++.++|+++.++
T Consensus 101 ~G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~v 133 (273)
T 4fgs_A 101 AGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDR 133 (273)
T ss_dssp HSCEEEEEECCCCCCCCCTTSCCHHHHHHHHHH
T ss_pred cCCCCEEEECCCCCCCCChhhccHHHHHHHHHH
Confidence 235677776554444433 3477888887765
No 241
>1c7s_A Beta-N-acetylhexosaminidase; glycosyl hydrolase, chitinolysis, A/B(TIM)-barrel, site directed mutagenesis; HET: CBS; 1.80A {Serratia marcescens} SCOP: b.1.18.2 b.2.2.3 c.1.8.6 d.92.2.1 PDB: 1c7t_A* 1qba_A 1qbb_A*
Probab=64.88 E-value=22 Score=37.06 Aligned_cols=117 Identities=9% Similarity=0.012 Sum_probs=64.7
Q ss_pred CCCeeeEecCCc-hhHHHHHHHHHHHhCCCC--E----EEEcCCCCh-------------------hhHHHHhhCCCCee
Q 013839 115 EGRSAGVQALSG-TGACRLFAEFQRRFHPES--H----IYFPDPTWS-------------------NHHNIWRDAQIPER 168 (435)
Q Consensus 115 ~~~v~~~~t~gg-~~a~~~~~~~~~~~~~gd--~----Vlv~~p~y~-------------------~~~~~~~~~g~~~~ 168 (435)
++.|. ++... .+++..+..|..++..++ . .+...|.|. .+.+.+..++++..
T Consensus 268 ~~~i~--I~a~~~~G~fyglqTL~QLl~~~~~~~ip~~~I~D~Prf~~RG~mLDvsR~f~~~~~ik~~Id~mA~~KlN~l 345 (858)
T 1c7s_A 268 KKEAQ--VIGFDQAGVFYGLQSILSLVPSDGSGKIATLDASDAPRFPYRGIFLDVARNFHKKDAVLRLLDQMAAYKLNKF 345 (858)
T ss_dssp SSCEE--EEESSHHHHHHHHHHHHHHSCTTSCCEEEEEEEEECCSCSEEEEEEECSSSCCCHHHHHHHHHHHHHTTCCEE
T ss_pred CCeEE--EEEecccceeHHHHHHHHHhhhcCCccccceEEEeCCCcceeeeeecCCCCCCCHHHHHHHHHHHHHhCCcEE
Confidence 44555 55444 444444445666665443 1 233346664 22344557888888
Q ss_pred eeeecCCCCCCcChHhHHHHhhcCCCC----cE-EEEeCC-CCC--CCCCCCCHHHHHHHHHHHHhcCceeee
Q 013839 169 TYHYYDPDSKSLDFAALMDDIKNAPDS----SF-FLLHPS-AHN--PTGVDPTEEQWREISYQFKVKGHFPFF 233 (435)
Q Consensus 169 ~v~~~~~~~~~~d~e~l~~~i~~~~~~----~~-~v~~~~-p~N--PtG~~~~~~~l~~i~~~~~~~~~~vi~ 233 (435)
.+.+.|..+|.+..+.+-+.-+....+ .. -.+.+. .++ |.|-.++++|+++|++.|+++++-||=
T Consensus 346 h~HltDdqgwriei~~yP~Lt~~Ga~r~~~~~~~~~~~p~~g~~~~~~~g~YT~~direIv~YA~~rgI~VIP 418 (858)
T 1c7s_A 346 HFHLSDDEGWRIEIPGLPELTEVGGQRCHDLSETTCLLPQYGQGPDVYGGFFSRQDYIDIIKYAQARQIEVIP 418 (858)
T ss_dssp EEECEETTEECBCCTTCTHHHHTTTEECSCTTCSSSBCCCTTCCSSCEECCBCHHHHHHHHHHHHTTTCEEEE
T ss_pred EEEeccCccccccccCCchhhhccccccccccccccccccccCCCCccCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 888876666766655543332100000 00 000000 011 345679999999999999999988774
No 242
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}
Probab=57.83 E-value=56 Score=27.54 Aligned_cols=95 Identities=7% Similarity=-0.057 Sum_probs=50.3
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEe
Q 013839 122 QALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLH 201 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~ 201 (435)
++.||++.+-... ...+...|.+|++.+-.-..........+.++..+.. |- -|.+++++.+.+......+++.
T Consensus 5 lVTGas~gIG~~~-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-D~----~~~~~v~~~~~~~~~~~d~lv~ 78 (230)
T 3guy_A 5 VITGASSGLGAEL-AKLYDAEGKATYLTGRSESKLSTVTNCLSNNVGYRAR-DL----ASHQEVEQLFEQLDSIPSTVVH 78 (230)
T ss_dssp EEESTTSHHHHHH-HHHHHHTTCCEEEEESCHHHHHHHHHTCSSCCCEEEC-CT----TCHHHHHHHHHSCSSCCSEEEE
T ss_pred EEecCCchHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHHhhccCeEee-cC----CCHHHHHHHHHHHhhcCCEEEE
Confidence 3556666655542 2334567877877665434444445555555555554 22 2677787777654333345554
Q ss_pred CCCCCCCCC--CCCHHHHHHHHH
Q 013839 202 PSAHNPTGV--DPTEEQWREISY 222 (435)
Q Consensus 202 ~~p~NPtG~--~~~~~~l~~i~~ 222 (435)
+....+.+. ..+.+++++..+
T Consensus 79 ~Ag~~~~~~~~~~~~~~~~~~~~ 101 (230)
T 3guy_A 79 SAGSGYFGLLQEQDPEQIQTLIE 101 (230)
T ss_dssp CCCCCCCSCGGGSCHHHHHHHHH
T ss_pred eCCcCCCCccccCCHHHHHHHHH
Confidence 433333222 245666666554
No 243
>1now_A Beta-hexosaminidase beta chain; (beta/alpha)8-barrel, homodimer, family 20 glycosidase, HYDR; HET: NAG IFG; 2.20A {Homo sapiens} SCOP: c.1.8.6 d.92.2.1 PDB: 1nou_A* 1np0_A* 2gjx_B* 3lmy_A* 1o7a_A* 2gk1_B*
Probab=52.47 E-value=18 Score=35.28 Aligned_cols=64 Identities=9% Similarity=-0.030 Sum_probs=42.9
Q ss_pred HHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeee
Q 013839 158 NIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFF 233 (435)
Q Consensus 158 ~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~ 233 (435)
+.+..++++.....+.|..+|.+..+..-+.-... . ..| |-.+|++|+++|++.|+++++-||-
T Consensus 175 d~ma~~KlN~lh~HltDdq~wr~e~~~~P~Lt~~G-a----------~~~-~~~YT~~di~eiv~yA~~rgI~VIP 238 (507)
T 1now_A 175 DAMAFNKFNVLHWHIVDDQSFPYQSITFPELSNKG-S----------YSL-SHVYTPNDVRMVIEYARLRGIRVLP 238 (507)
T ss_dssp HHHHHTTCCEEEEECCCSSCCCBCCSSCHHHHHHH-S----------SST-TSCBCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHhCCcEEEEeeccCccceeeccchhhhhccc-C----------cCC-CCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 34557788888888866666666554333322110 0 012 5578999999999999999988874
No 244
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=50.15 E-value=1.2e+02 Score=26.25 Aligned_cols=100 Identities=9% Similarity=0.041 Sum_probs=55.6
Q ss_pred CCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHH---HHhhCCCCeeeeeecCCCCCCcChHhHHHHh---
Q 013839 116 GRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHN---IWRDAQIPERTYHYYDPDSKSLDFAALMDDI--- 189 (435)
Q Consensus 116 ~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i--- 189 (435)
++++ ++.||+.++=... ...+...|.+|++.+-.-..... .+...|.+...+.. |-. |.+++++.+
T Consensus 9 gKva--lVTGas~GIG~ai-a~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~-Dv~----~~~~v~~~~~~~ 80 (255)
T 4g81_D 9 GKTA--LVTGSARGLGFAY-AEGLAAAGARVILNDIRATLLAESVDTLTRKGYDAHGVAF-DVT----DELAIEAAFSKL 80 (255)
T ss_dssp TCEE--EETTCSSHHHHHH-HHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCC-CTT----CHHHHHHHHHHH
T ss_pred CCEE--EEeCCCcHHHHHH-HHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEe-eCC----CHHHHHHHHHHH
Confidence 3555 5667766665553 33356689899887643322222 33456777777665 222 444554443
Q ss_pred hcCCCCcEEEEeCCCCCCCCC--CCCHHHHHHHHHH
Q 013839 190 KNAPDSSFFLLHPSAHNPTGV--DPTEEQWREISYQ 223 (435)
Q Consensus 190 ~~~~~~~~~v~~~~p~NPtG~--~~~~~~l~~i~~~ 223 (435)
.+.-.+..+++.+...++.+. .++.++|+++.+.
T Consensus 81 ~~~~G~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~v 116 (255)
T 4g81_D 81 DAEGIHVDILINNAGIQYRKPMVELELENWQKVIDT 116 (255)
T ss_dssp HHTTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred HHHCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHH
Confidence 333345667776544444333 3477778777764
No 245
>1ofu_X SULA, hypothetical protein PA3008; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=48.65 E-value=85 Score=23.70 Aligned_cols=100 Identities=11% Similarity=0.072 Sum_probs=55.7
Q ss_pred CCchhHHHHHHHHHHHhC---CCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEE
Q 013839 124 LSGTGACRLFAEFQRRFH---PESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLL 200 (435)
Q Consensus 124 ~gg~~a~~~~~~~~~~~~---~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~ 200 (435)
..|.+.+.++.-.++.+. .+.-|+...|.+..+...+...|.....+-.-...+-.-.+..+|++++. ....+|+
T Consensus 11 ~~g~~e~~lLlp~L~~l~~~~~~r~ilwi~pp~~~~~~~L~~~Gl~~~rll~v~~~~~~d~lwa~EqaLrs--g~~~aVl 88 (119)
T 1ofu_X 11 GLPGHCLTLLAPILRELSEEQDARWLTLIAPPASLTHEWLRRAGLNRERILLLQAKDNAAALALSCEALRL--GRSHTVV 88 (119)
T ss_dssp SCHHHHHHHHHHHHHHHTTCSSSSEEEEESCCTTSCHHHHHHTTCCTTSEEEECCSSHHHHHHHHHHHHHH--TCEEEEE
T ss_pred CCCccHHHHHHHHHHHhcccccCccEEEECCCCCCCHHHHHHcCCChHHEEEEECCCcHHHHHHHHHHHhc--CCccEEE
Confidence 344444555543334443 45566666666778888888889865443221222111234566677762 2334444
Q ss_pred eCCCCCCCCCCCCHHHHHHHHHHHHhcCcee
Q 013839 201 HPSAHNPTGVDPTEEQWREISYQFKVKGHFP 231 (435)
Q Consensus 201 ~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~v 231 (435)
. .+. .++..+.+++--.|++.+.+.
T Consensus 89 ~-wl~-----~l~~~~~RRLqlAA~~g~~~~ 113 (119)
T 1ofu_X 89 S-WLE-----PLSRAARKQLSRAAQLGQAQS 113 (119)
T ss_dssp E-CCS-----SCCHHHHHHHHHHHHHHTCEE
T ss_pred E-CCC-----cCChHHHHHHHHHHHhCCCeE
Confidence 3 322 257788888888787766543
No 246
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}
Probab=47.81 E-value=49 Score=29.18 Aligned_cols=74 Identities=5% Similarity=-0.049 Sum_probs=42.6
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEe
Q 013839 122 QALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLH 201 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~ 201 (435)
++.||++.+-... ...+...|.+|++.+-.-.......+..+.++..+.. |- -|.+.+++.+++. .+..+++.
T Consensus 20 lVTGas~gIG~~~-a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-Dl----~d~~~v~~~~~~~-~~iD~lv~ 92 (291)
T 3rd5_A 20 VITGANSGLGAVT-ARELARRGATVIMAVRDTRKGEAAARTMAGQVEVREL-DL----QDLSSVRRFADGV-SGADVLIN 92 (291)
T ss_dssp EEECCSSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHTTSSSEEEEEEC-CT----TCHHHHHHHHHTC-CCEEEEEE
T ss_pred EEeCCCChHHHHH-HHHHHHCCCEEEEEECCHHHHHHHHHHhcCCeeEEEc-CC----CCHHHHHHHHHhc-CCCCEEEE
Confidence 4667766665542 2335568888887654433334444455555655554 22 2677888877754 34566664
Q ss_pred C
Q 013839 202 P 202 (435)
Q Consensus 202 ~ 202 (435)
+
T Consensus 93 n 93 (291)
T 3rd5_A 93 N 93 (291)
T ss_dssp C
T ss_pred C
Confidence 3
No 247
>3ozo_A N-acetylglucosaminidase; beta-N-acetyl-D-hexosaminidase, hydrolase-hydrolase inhibito; HET: NGT; 2.00A {Ostrinia furnacalis} PDB: 3nsn_A* 3nsm_A* 3ozp_A* 3s6t_A* 3vtr_A*
Probab=45.53 E-value=25 Score=34.87 Aligned_cols=64 Identities=13% Similarity=-0.055 Sum_probs=42.6
Q ss_pred HHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeee
Q 013839 158 NIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFF 233 (435)
Q Consensus 158 ~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~ 233 (435)
+.+..+++++....+.|..+|.+..+..-+.-... . ...+-.+|++|+++|++.|+++++-||-
T Consensus 211 d~mA~~KlN~lH~HltDdqgwrlei~~~P~Lt~~G-a-----------~~~~~~YT~~di~eiv~yA~~rgI~VIP 274 (572)
T 3ozo_A 211 EAMAAVKLNTFHWHITDSQSFPFVTTKRPNLYKFG-A-----------LSPQKVYTKAAIREVVRFGLERGVRVLP 274 (572)
T ss_dssp HHHHHTTCCEEEEECCCSSCCCBCCSSSHHHHHHH-S-----------SSSSSCBCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHcCCceEEEEeecCcCceeccccCcchhccC-C-----------cCCCCCcCHHHHHHHHHHHHHhCCceee
Confidence 34557788888888866666766655443322100 0 0124578999999999999999987764
No 248
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*
Probab=43.71 E-value=71 Score=27.30 Aligned_cols=96 Identities=11% Similarity=0.016 Sum_probs=51.1
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhc---CCCCcEE
Q 013839 122 QALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKN---APDSSFF 198 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~---~~~~~~~ 198 (435)
++.||++.+-... ...+...|-+|++.+-.-..........+.++..+.. |- -|.+++++.+++ ...+..+
T Consensus 10 lVTGas~gIG~a~-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-Dv----~~~~~v~~~~~~~~~~~g~id~ 83 (247)
T 3rwb_A 10 LVTGAAQGIGKAI-AARLAADGATVIVSDINAEGAKAAAASIGKKARAIAA-DI----SDPGSVKALFAEIQALTGGIDI 83 (247)
T ss_dssp EEETTTSHHHHHH-HHHHHHTTCEEEEECSCHHHHHHHHHHHCTTEEECCC-CT----TCHHHHHHHHHHHHHHHSCCSE
T ss_pred EEECCCCHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceEEEEc-CC----CCHHHHHHHHHHHHHHCCCCCE
Confidence 5666666665542 2334568888888765444444444555666666655 22 255555555442 1124566
Q ss_pred EEeCCCCCCCCC--CCCHHHHHHHHHH
Q 013839 199 LLHPSAHNPTGV--DPTEEQWREISYQ 223 (435)
Q Consensus 199 v~~~~p~NPtG~--~~~~~~l~~i~~~ 223 (435)
++.+....+.+. ..+.++++++.+.
T Consensus 84 lv~nAg~~~~~~~~~~~~~~~~~~~~~ 110 (247)
T 3rwb_A 84 LVNNASIVPFVAWDDVDLDHWRKIIDV 110 (247)
T ss_dssp EEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred EEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 665444333332 3466666665553
No 249
>3rcn_A Beta-N-acetylhexosaminidase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta half sandwich; HET: MSE; 2.51A {Arthrobacter aurescens}
Probab=42.10 E-value=18 Score=35.64 Aligned_cols=76 Identities=12% Similarity=-0.018 Sum_probs=46.7
Q ss_pred HHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcC--CCCcEEEEe-C--CCCCCCCCCCCHHHHHHHHHHHHhcCceee
Q 013839 158 NIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNA--PDSSFFLLH-P--SAHNPTGVDPTEEQWREISYQFKVKGHFPF 232 (435)
Q Consensus 158 ~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~--~~~~~~v~~-~--~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi 232 (435)
+.+..+++++....+.|..+|.+..+..-+.-... +..+.+=-. + .-..|.|-.+|++|+++|++.|+++++-||
T Consensus 162 D~MA~~KlN~lH~HltDdqgwriei~~yP~Lt~~Ga~r~~t~~g~~~~~~~~~~~~~g~YT~~di~eIv~YA~~rgI~VI 241 (543)
T 3rcn_A 162 EVMAMHKLNVLHLHLTDDQGWRMQINRYPKLTETGAWRRESSLGSWRAGVFDGRPHGGFYTQDDLREIVAFAADRHITVI 241 (543)
T ss_dssp HHHHHTTCCEEEEECEETTEECBCCSSCTHHHHTTTEESCCBSSCGGGCCBCCCCEECCBCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHcCCcEEEeecccccCcchhcccchhhhhhccccccccccccccccccCCccCCCcCHHHHHHHHHHHHHcCCEEe
Confidence 44557888888888877766766665544332210 001100000 0 012344667999999999999999998877
Q ss_pred e
Q 013839 233 F 233 (435)
Q Consensus 233 ~ 233 (435)
=
T Consensus 242 P 242 (543)
T 3rcn_A 242 P 242 (543)
T ss_dssp E
T ss_pred e
Confidence 5
No 250
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}
Probab=41.73 E-value=1.3e+02 Score=26.17 Aligned_cols=95 Identities=11% Similarity=0.007 Sum_probs=50.4
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcC---CCCcEE
Q 013839 122 QALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNA---PDSSFF 198 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~---~~~~~~ 198 (435)
++.|+++.+-... ...+...|.+|++.+-.-..........+.++..+.. |- -|.+++++.+++. -.+..+
T Consensus 31 lVTGas~GIG~ai-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-Dv----~d~~~v~~~~~~~~~~~g~iD~ 104 (277)
T 4dqx_A 31 IVTGGGSGIGRAT-AELFAKNGAYVVVADVNEDAAVRVANEIGSKAFGVRV-DV----SSAKDAESMVEKTTAKWGRVDV 104 (277)
T ss_dssp EEETTTSHHHHHH-HHHHHHTTCEEEEEESSHHHHHHHHHHHCTTEEEEEC-CT----TCHHHHHHHHHHHHHHHSCCCE
T ss_pred EEECCCcHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceEEEEe-cC----CCHHHHHHHHHHHHHHcCCCCE
Confidence 5667766665542 2334568888887664433344444455666666655 22 2555655554421 124566
Q ss_pred EEeCCCCCCCCC--CCCHHHHHHHHH
Q 013839 199 LLHPSAHNPTGV--DPTEEQWREISY 222 (435)
Q Consensus 199 v~~~~p~NPtG~--~~~~~~l~~i~~ 222 (435)
++.+....+.+. ..+.++++++.+
T Consensus 105 lv~nAg~~~~~~~~~~~~~~~~~~~~ 130 (277)
T 4dqx_A 105 LVNNAGFGTTGNVVTIPEETWDRIMS 130 (277)
T ss_dssp EEECCCCCCCBCTTTSCHHHHHHHHH
T ss_pred EEECCCcCCCCCcccCCHHHHHHHHH
Confidence 665443333222 346677766554
No 251
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}
Probab=41.27 E-value=1.3e+02 Score=26.23 Aligned_cols=96 Identities=11% Similarity=0.007 Sum_probs=49.8
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhc---CCCCcEE
Q 013839 122 QALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKN---APDSSFF 198 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~---~~~~~~~ 198 (435)
++.||++.+-... ...+...|.+|++.+-.-..........+.++..+.. |-. |.+++++.+++ .-.+..+
T Consensus 33 lVTGas~gIG~ai-a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-Dv~----d~~~v~~~~~~~~~~~g~iD~ 106 (277)
T 3gvc_A 33 IVTGAGAGIGLAV-ARRLADEGCHVLCADIDGDAADAAATKIGCGAAACRV-DVS----DEQQIIAMVDACVAAFGGVDK 106 (277)
T ss_dssp EETTTTSTHHHHH-HHHHHHTTCEEEEEESSHHHHHHHHHHHCSSCEEEEC-CTT----CHHHHHHHHHHHHHHHSSCCE
T ss_pred EEECCCcHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHcCCcceEEEe-cCC----CHHHHHHHHHHHHHHcCCCCE
Confidence 5666666654442 2335568888887664433344444445666666654 222 45555554432 1124566
Q ss_pred EEeCCCCCCCCC--CCCHHHHHHHHHH
Q 013839 199 LLHPSAHNPTGV--DPTEEQWREISYQ 223 (435)
Q Consensus 199 v~~~~p~NPtG~--~~~~~~l~~i~~~ 223 (435)
++.+....+.+. ..+.++++++.+.
T Consensus 107 lvnnAg~~~~~~~~~~~~~~~~~~~~v 133 (277)
T 3gvc_A 107 LVANAGVVHLASLIDTTVEDFDRVIAI 133 (277)
T ss_dssp EEECCCCCCCBCTTTCCHHHHHHHHHH
T ss_pred EEECCCCCCCCChhhCCHHHHHHHHHH
Confidence 665443332222 3467777766553
No 252
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}
Probab=37.71 E-value=1.3e+02 Score=25.72 Aligned_cols=95 Identities=6% Similarity=-0.104 Sum_probs=41.5
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhc---CCCCcEE
Q 013839 122 QALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKN---APDSSFF 198 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~---~~~~~~~ 198 (435)
++.||++.+-... ...+...|.+|++.+-.-..........+.++..+.. |-. |.+++++.+++ ...+..+
T Consensus 11 lVTGas~gIG~ai-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-Dv~----~~~~v~~~~~~~~~~~g~id~ 84 (257)
T 3tpc_A 11 IVTGASSGLGAAV-TRMLAQEGATVLGLDLKPPAGEEPAAELGAAVRFRNA-DVT----NEADATAALAFAKQEFGHVHG 84 (257)
T ss_dssp EEESTTSHHHHHH-HHHHHHTTCEEEEEESSCC------------CEEEEC-CTT----CHHHHHHHHHHHHHHHSCCCE
T ss_pred EEeCCCCHHHHHH-HHHHHHCCCEEEEEeCChHHHHHHHHHhCCceEEEEc-cCC----CHHHHHHHHHHHHHHcCCCCE
Confidence 5666666665542 2334567888876654333333333444555555544 222 45555555432 1124566
Q ss_pred EEeCCCCCCCCC------CCCHHHHHHHHH
Q 013839 199 LLHPSAHNPTGV------DPTEEQWREISY 222 (435)
Q Consensus 199 v~~~~p~NPtG~------~~~~~~l~~i~~ 222 (435)
++.+....+.+. ..+.+++++..+
T Consensus 85 lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~ 114 (257)
T 3tpc_A 85 LVNCAGTAPGEKILGRSGPHALDSFARTVA 114 (257)
T ss_dssp EEECCCCCCCCCSEETTEECCHHHHHHHHH
T ss_pred EEECCCCCCCCccccccccCCHHHHHHHHH
Confidence 664433332222 244566665554
No 253
>1bqc_A Protein (beta-mannanase); glycosyl hydrolase, family 5, thermomonospora fusca; 1.50A {Thermobifida fusca} SCOP: c.1.8.3 PDB: 2man_A* 3man_A*
Probab=37.01 E-value=78 Score=28.05 Aligned_cols=21 Identities=5% Similarity=-0.012 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHhcCceeeee
Q 013839 214 EEQWREISYQFKVKGHFPFFD 234 (435)
Q Consensus 214 ~~~l~~i~~~~~~~~~~vi~D 234 (435)
.+.++++++.|.++|+.||+|
T Consensus 64 ~~~ld~~v~~a~~~Gi~Vild 84 (302)
T 1bqc_A 64 PSDVANVISLCKQNRLICMLE 84 (302)
T ss_dssp HHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEE
Confidence 355666666666666666665
No 254
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}
Probab=36.66 E-value=1.8e+02 Score=25.10 Aligned_cols=95 Identities=5% Similarity=-0.030 Sum_probs=48.7
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhc--CCCCcEEE
Q 013839 122 QALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKN--APDSSFFL 199 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~--~~~~~~~v 199 (435)
++.||++++-... ...+...|.+|++.+-.-..........+.++..+.. |-. |.+.+++.++. ...+..++
T Consensus 34 lVTGas~GIG~ai-a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~-Dl~----~~~~v~~~~~~~~~~~~id~l 107 (281)
T 3ppi_A 34 IVSGGAGGLGEAT-VRRLHADGLGVVIADLAAEKGKALADELGNRAEFVST-NVT----SEDSVLAAIEAANQLGRLRYA 107 (281)
T ss_dssp EEETTTSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEEC-CTT----CHHHHHHHHHHHTTSSEEEEE
T ss_pred EEECCCChHHHHH-HHHHHHCCCEEEEEeCChHHHHHHHHHhCCceEEEEc-CCC----CHHHHHHHHHHHHHhCCCCeE
Confidence 4567766665542 2334568888887664433444444555666666655 222 45555555432 21244566
Q ss_pred EeCCC-CCCCC-------CCCCHHHHHHHHH
Q 013839 200 LHPSA-HNPTG-------VDPTEEQWREISY 222 (435)
Q Consensus 200 ~~~~p-~NPtG-------~~~~~~~l~~i~~ 222 (435)
+.++. ..+.+ ...+.+++++..+
T Consensus 108 v~~aag~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (281)
T 3ppi_A 108 VVAHGGFGVAQRIVQRDGSPADMGGFTKTID 138 (281)
T ss_dssp EECCCCCCCCCCSBCTTSCBCCHHHHHHHHH
T ss_pred EEccCcccccccccccccccCCHHHHHHHHH
Confidence 55422 22222 2355666665554
No 255
>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}
Probab=36.64 E-value=64 Score=27.96 Aligned_cols=93 Identities=10% Similarity=-0.023 Sum_probs=42.7
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhc---CCCCcEE
Q 013839 122 QALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKN---APDSSFF 198 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~---~~~~~~~ 198 (435)
++.||++.+-... ...+...|.+|++.+-.-......+...+...+..++ -|.+++++.+++ .-.+..+
T Consensus 31 lVTGas~gIG~ai-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~Dv-------~~~~~v~~~~~~~~~~~g~iD~ 102 (260)
T 3gem_A 31 LITGASQRVGLHC-ALRLLEHGHRVIISYRTEHASVTELRQAGAVALYGDF-------SCETGIMAFIDLLKTQTSSLRA 102 (260)
T ss_dssp EESSTTSHHHHHH-HHHHHHTTCCEEEEESSCCHHHHHHHHHTCEEEECCT-------TSHHHHHHHHHHHHHHCSCCSE
T ss_pred EEECCCCHHHHHH-HHHHHHCCCEEEEEeCChHHHHHHHHhcCCeEEECCC-------CCHHHHHHHHHHHHHhcCCCCE
Confidence 4566666665542 2334567877776553333333444444543333332 144555544432 1124556
Q ss_pred EEeCCCCCCC-CCCCCHHHHHHHHH
Q 013839 199 LLHPSAHNPT-GVDPTEEQWREISY 222 (435)
Q Consensus 199 v~~~~p~NPt-G~~~~~~~l~~i~~ 222 (435)
++.+...... ....+.+++++..+
T Consensus 103 lv~nAg~~~~~~~~~~~~~~~~~~~ 127 (260)
T 3gem_A 103 VVHNASEWLAETPGEEADNFTRMFS 127 (260)
T ss_dssp EEECCCCCCCCCTTCHHHHHHHHHH
T ss_pred EEECCCccCCCCCCCCHHHHHHHHH
Confidence 6644332211 12334455554443
No 256
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A
Probab=36.56 E-value=44 Score=29.15 Aligned_cols=83 Identities=13% Similarity=-0.016 Sum_probs=46.3
Q ss_pred CCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHH
Q 013839 143 ESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISY 222 (435)
Q Consensus 143 gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~ 222 (435)
+=.|++....|.+....+.... +.+.+|+. -.+|.+|.-++.++.. -...++++.. ..++.++++++.+
T Consensus 76 ~IsVlTd~~~F~gs~~dL~~ir-~~v~lPvL-rKDfi~~~~qi~ea~~---~GAD~ilLi~------a~l~~~~l~~l~~ 144 (251)
T 1i4n_A 76 AISILTEKHYFKGDPAFVRAAR-NLTCRPIL-AKDFYIDTVQVKLASS---VGADAILIIA------RILTAEQIKEIYE 144 (251)
T ss_dssp EEEEECCCSSSCCCTHHHHHHH-TTCCSCEE-EECCCCSTHHHHHHHH---TTCSEEEEEG------GGSCHHHHHHHHH
T ss_pred ceEEEecccccCCCHHHHHHHH-HhCCCCEE-EeeCCCCHHHHHHHHH---cCCCEEEEec------ccCCHHHHHHHHH
Confidence 3345555554543333322211 11233443 2347777777776544 2334444422 1467788999999
Q ss_pred HHHhcCceeeeecc
Q 013839 223 QFKVKGHFPFFDMA 236 (435)
Q Consensus 223 ~~~~~~~~vi~Dea 236 (435)
.|++.|+.+++|-.
T Consensus 145 ~a~~lGl~~lvEv~ 158 (251)
T 1i4n_A 145 AAEELGMDSLVEVH 158 (251)
T ss_dssp HHHTTTCEEEEEEC
T ss_pred HHHHcCCeEEEEeC
Confidence 99999998888753
No 257
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}
Probab=36.53 E-value=1.7e+02 Score=25.31 Aligned_cols=95 Identities=7% Similarity=-0.021 Sum_probs=50.2
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcC---CCCcEE
Q 013839 122 QALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNA---PDSSFF 198 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~---~~~~~~ 198 (435)
++.||++.+-... ...+...|.+|++.+-.-..........+.++..+.. |- -|.+.+++.+.+. ..+..+
T Consensus 9 lVTGas~gIG~~~-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-Dv----~~~~~~~~~~~~~~~~~g~id~ 82 (281)
T 3m1a_A 9 LVTGASSGFGRAI-AEAAVAAGDTVIGTARRTEALDDLVAAYPDRAEAISL-DV----TDGERIDVVAADVLARYGRVDV 82 (281)
T ss_dssp EETTTTSHHHHHH-HHHHHHTTCEEEEEESSGGGGHHHHHHCTTTEEEEEC-CT----TCHHHHHHHHHHHHHHHSCCSE
T ss_pred EEECCCChHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHhccCCceEEEe-eC----CCHHHHHHHHHHHHHhCCCCCE
Confidence 5667776665542 2335568888887665544555555555656666654 22 2555555554321 123456
Q ss_pred EEeCCCCCCCCC--CCCHHHHHHHHH
Q 013839 199 LLHPSAHNPTGV--DPTEEQWREISY 222 (435)
Q Consensus 199 v~~~~p~NPtG~--~~~~~~l~~i~~ 222 (435)
++.+....+.+. ..+.++++++.+
T Consensus 83 lv~~Ag~~~~~~~~~~~~~~~~~~~~ 108 (281)
T 3m1a_A 83 LVNNAGRTQVGAFEETTERELRDLFE 108 (281)
T ss_dssp EEECCCCEEECCTTTCCHHHHHHHHH
T ss_pred EEECCCcCCCCChhhCCHHHHHHHHH
Confidence 664433222222 346666666554
No 258
>1yht_A DSPB; beta barrel, hydrolase; 2.00A {Aggregatibacter actinomycetemcomitans} SCOP: c.1.8.6
Probab=36.20 E-value=31 Score=32.05 Aligned_cols=74 Identities=14% Similarity=-0.011 Sum_probs=43.8
Q ss_pred HHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcC-CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeee
Q 013839 157 HNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNA-PDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFF 233 (435)
Q Consensus 157 ~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~-~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~ 233 (435)
.+.+..+++++....+.|..+|.+..+.+-+..... ........ + ..+.+-.+|++|+++|++.|+++++-||=
T Consensus 39 id~mA~~KlN~lH~HltDdq~~rle~~~~~~~~~~~~~~~~g~~~--~-~~~~~g~YT~~di~eiv~YA~~rgI~VIP 113 (367)
T 1yht_A 39 IDTISLSGGNFLHLHFSDHENYAIESHLLNQRAENAVQGKDGIYI--N-PYTGKPFLSYRQLDDIKAYAKAKGIELIP 113 (367)
T ss_dssp HHHHHHTTCCEEEEECBSSSCBCBCBTTTTBCGGGSEECTTSCEE--C-TTTCCEEBCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHcCCcEEEEEEEcCCCceeeecchhhhhhhhccccCCCcC--C-CCCCCCCcCHHHHHHHHHHHHHcCCEEEE
Confidence 345667889999888877666766543321100000 00001110 1 11223468999999999999999988774
No 259
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A
Probab=35.57 E-value=1.6e+02 Score=25.36 Aligned_cols=95 Identities=8% Similarity=0.038 Sum_probs=47.7
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhc---CCCCcEE
Q 013839 122 QALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKN---APDSSFF 198 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~---~~~~~~~ 198 (435)
++.||++.+-... ...+...|.+|++.+-.-.......+..+.++..+.. |-. |.+++++.+++ ...+..+
T Consensus 31 lVTGas~gIG~ai-a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-Dv~----d~~~v~~~~~~~~~~~g~iD~ 104 (266)
T 3grp_A 31 LVTGATGGIGEAI-ARCFHAQGAIVGLHGTREDKLKEIAADLGKDVFVFSA-NLS----DRKSIKQLAEVAEREMEGIDI 104 (266)
T ss_dssp EESSTTSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHHHHCSSEEEEEC-CTT----SHHHHHHHHHHHHHHHTSCCE
T ss_pred EEeCCCcHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceEEEEe-ecC----CHHHHHHHHHHHHHHcCCCCE
Confidence 5667776665542 2334568888877654433444455556667666655 222 55555555432 1124566
Q ss_pred EEeCCCCCCCCC--CCCHHHHHHHHH
Q 013839 199 LLHPSAHNPTGV--DPTEEQWREISY 222 (435)
Q Consensus 199 v~~~~p~NPtG~--~~~~~~l~~i~~ 222 (435)
++.+....+.+. ..+.+++++..+
T Consensus 105 lvnnAg~~~~~~~~~~~~~~~~~~~~ 130 (266)
T 3grp_A 105 LVNNAGITRDGLFVRMQDQDWDDVLA 130 (266)
T ss_dssp EEECCCCC-----CCCHHHHHHHHHH
T ss_pred EEECCCCCCCCCcccCCHHHHHHHHH
Confidence 664433222221 234455555443
No 260
>2yl5_A Beta-N-acetylhexosaminidase; hydrolase; 2.15A {Streptococcus pneumoniae} PDB: 2yla_A* 2yl9_A*
Probab=34.31 E-value=31 Score=33.00 Aligned_cols=28 Identities=21% Similarity=0.101 Sum_probs=24.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCceeee
Q 013839 206 NPTGVDPTEEQWREISYQFKVKGHFPFF 233 (435)
Q Consensus 206 NPtG~~~~~~~l~~i~~~~~~~~~~vi~ 233 (435)
+|.|-.+|++++++|++.|+++++-||=
T Consensus 86 ~~~~~~YT~~di~eIv~YA~~rgI~VIP 113 (442)
T 2yl5_A 86 DPNGTALTQAEVTELIEYAKSKDIGLIP 113 (442)
T ss_dssp CTTCSCBCHHHHHHHHHHHHTTTCEEEE
T ss_pred CCCCCCcCHHHHHHHHHHHHHcCCeeee
Confidence 5667789999999999999999988774
No 261
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=34.15 E-value=35 Score=29.82 Aligned_cols=78 Identities=10% Similarity=0.030 Sum_probs=48.4
Q ss_pred EEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHH
Q 013839 146 IYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFK 225 (435)
Q Consensus 146 Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~ 225 (435)
|++....|.+....+.... ..+.+|+. -.+|-+|.-++.++-.- +-...+++. ..++.++++++.+.|+
T Consensus 82 VLTd~~~F~Gs~~~L~~vr-~~v~lPvL-rKDFiid~yQI~eAr~~-GADaILLI~--------a~L~~~~l~~l~~~A~ 150 (258)
T 4a29_A 82 ITTEEKYFNGSYETLRKIA-SSVSIPIL-MSDFIVKESQIDDAYNL-GADTVLLIV--------KILTERELESLLEYAR 150 (258)
T ss_dssp EECCSTTTCCCHHHHHHHH-TTCSSCEE-EESCCCSHHHHHHHHHH-TCSEEEEEG--------GGSCHHHHHHHHHHHH
T ss_pred EeCCCCCCCCCHHHHHHHH-HhcCCCEe-eccccccHHHHHHHHHc-CCCeeehHH--------hhcCHHHHHHHHHHHH
Confidence 4555556655555444322 12344443 34688999888776542 122233332 4578899999999999
Q ss_pred hcCceeeee
Q 013839 226 VKGHFPFFD 234 (435)
Q Consensus 226 ~~~~~vi~D 234 (435)
+.|+-+++.
T Consensus 151 ~lGl~~LvE 159 (258)
T 4a29_A 151 SYGMEPLIL 159 (258)
T ss_dssp HTTCCCEEE
T ss_pred HHhHHHHHh
Confidence 999887774
No 262
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0
Probab=34.09 E-value=1.3e+02 Score=26.02 Aligned_cols=95 Identities=12% Similarity=-0.022 Sum_probs=46.8
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEEEcCCC------------Chhh---HHHHhhCCCCeeeeeecCCCCCCcChHhHH
Q 013839 122 QALSGTGACRLFAEFQRRFHPESHIYFPDPT------------WSNH---HNIWRDAQIPERTYHYYDPDSKSLDFAALM 186 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~------------y~~~---~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~ 186 (435)
++.||++.+-... ...+...|.+|++.+-. -... ...++..|.++..+.. |-. |.++++
T Consensus 14 lVTGas~gIG~~i-a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-D~~----~~~~v~ 87 (287)
T 3pxx_A 14 LVTGGARGQGRSH-AVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEV-DVR----DRAAVS 87 (287)
T ss_dssp EEETTTSHHHHHH-HHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEEC-CTT----CHHHHH
T ss_pred EEeCCCChHHHHH-HHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEc-cCC----CHHHHH
Confidence 5667766665542 23355688888765422 0111 1123345666666655 222 455555
Q ss_pred HHhhc---CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHH
Q 013839 187 DDIKN---APDSSFFLLHPSAHNPTGVDPTEEQWREISY 222 (435)
Q Consensus 187 ~~i~~---~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~ 222 (435)
+.+.+ .-.+..+++.+....+.+...+.+++++..+
T Consensus 88 ~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~ 126 (287)
T 3pxx_A 88 RELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFD 126 (287)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHH
T ss_pred HHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhh
Confidence 44432 1124566665444333333356666666554
No 263
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A
Probab=34.07 E-value=1.9e+02 Score=24.61 Aligned_cols=95 Identities=7% Similarity=-0.035 Sum_probs=48.8
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhc---CCCCcEE
Q 013839 122 QALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKN---APDSSFF 198 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~---~~~~~~~ 198 (435)
++.||++.+-... ...+...|.+|++.+-.-..........+.+...+.. |- -|.+++++.+++ ...+..+
T Consensus 12 lVTGas~gIG~~i-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-D~----~~~~~v~~~~~~~~~~~g~id~ 85 (259)
T 4e6p_A 12 LITGSARGIGRAF-AEAYVREGATVAIADIDIERARQAAAEIGPAAYAVQM-DV----TRQDSIDAAIAATVEHAGGLDI 85 (259)
T ss_dssp EEETCSSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEEC-CT----TCHHHHHHHHHHHHHHSSSCCE
T ss_pred EEECCCcHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHhCCCceEEEe-eC----CCHHHHHHHHHHHHHHcCCCCE
Confidence 4566666665442 2335568888887664433444444455556655554 22 255555555432 1124567
Q ss_pred EEeCCCCCCCCC--CCCHHHHHHHHH
Q 013839 199 LLHPSAHNPTGV--DPTEEQWREISY 222 (435)
Q Consensus 199 v~~~~p~NPtG~--~~~~~~l~~i~~ 222 (435)
++.+....+.+. ..+.+++++..+
T Consensus 86 lv~~Ag~~~~~~~~~~~~~~~~~~~~ 111 (259)
T 4e6p_A 86 LVNNAALFDLAPIVEITRESYEKLFA 111 (259)
T ss_dssp EEECCCCCCCBCGGGCCHHHHHHHHH
T ss_pred EEECCCcCCCCCcccCCHHHHHHHHH
Confidence 765443322221 235666666554
No 264
>4gqr_A Pancreatic alpha-amylase; glycosyl hydrolase, diabetes, obesity, digestion, glycosidas inhibition, flavonol, drug design; HET: NAG MYC; 1.20A {Homo sapiens} PDB: 1cpu_A* 1bsi_A 1u2y_A* 1u30_A* 1u33_A* 1xcw_A* 1xcx_A* 1xd0_A* 1xd1_A* 2qmk_A* 2qv4_A* 3bai_A* 3baj_A* 3baw_A* 3ij7_A* 1hny_A* 3ij9_A* 3ij8_A* 4gqq_A* 1kgw_A* ...
Probab=33.96 E-value=26 Score=33.61 Aligned_cols=32 Identities=13% Similarity=0.216 Sum_probs=27.8
Q ss_pred CCCCHHHHHHHHHHHHhcCceeeeeccCCCcc
Q 013839 210 VDPTEEQWREISYQFKVKGHFPFFDMAYQGFA 241 (435)
Q Consensus 210 ~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~ 241 (435)
...+.++++++++-|+++|+-||.|-++....
T Consensus 72 ~~Gt~~df~~lv~~aH~~Gi~VilD~V~NH~~ 103 (496)
T 4gqr_A 72 RSGNEDEFRNMVTRCNNVGVRIYVDAVINHMC 103 (496)
T ss_dssp TTBCHHHHHHHHHHHHHTTCEEEEEECCSEEE
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEEccCcCC
Confidence 34578999999999999999999999986653
No 265
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=32.67 E-value=1.4e+02 Score=25.83 Aligned_cols=100 Identities=6% Similarity=-0.040 Sum_probs=55.0
Q ss_pred CCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhH---HHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhc-
Q 013839 116 GRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHH---NIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKN- 191 (435)
Q Consensus 116 ~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~---~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~- 191 (435)
++++ ++.||+.++=... ...+...|.+|++.+-.-.... .-++..|.+...+.. |-. |.+++++.+++
T Consensus 7 gKva--lVTGas~GIG~ai-A~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~-Dvt----~~~~v~~~~~~~ 78 (254)
T 4fn4_A 7 NKVV--IVTGAGSGIGRAI-AKKFALNDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKA-DVS----KKKDVEEFVRRT 78 (254)
T ss_dssp TCEE--EEETTTSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEEC-CTT----SHHHHHHHHHHH
T ss_pred CCEE--EEeCCCCHHHHHH-HHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEc-cCC----CHHHHHHHHHHH
Confidence 4555 5666666665553 2334568888887664332222 234456778777765 322 55555555432
Q ss_pred --CCCCcEEEEeCCC-CCCCCC--CCCHHHHHHHHHH
Q 013839 192 --APDSSFFLLHPSA-HNPTGV--DPTEEQWREISYQ 223 (435)
Q Consensus 192 --~~~~~~~v~~~~p-~NPtG~--~~~~~~l~~i~~~ 223 (435)
.-.+..+++.+.. ..+.+. .++.++|+++.++
T Consensus 79 ~~~~G~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~v 115 (254)
T 4fn4_A 79 FETYSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAV 115 (254)
T ss_dssp HHHHSCCCEEEECCCCCCTTCCGGGCCHHHHHHHHHH
T ss_pred HHHcCCCCEEEECCcccCCCCChhhCCHHHHHHHHHH
Confidence 1134566665443 223332 3578888887765
No 266
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0
Probab=31.75 E-value=2.5e+02 Score=24.14 Aligned_cols=95 Identities=11% Similarity=0.014 Sum_probs=49.1
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhc---CCCCcEE
Q 013839 122 QALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKN---APDSSFF 198 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~---~~~~~~~ 198 (435)
++.||++.+-... ...+...|.+|++.+-.-..........+.+...+.. |-. |.+++++.+++ .-.+..+
T Consensus 15 lVTGas~gIG~ai-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-Dv~----~~~~v~~~~~~~~~~~g~id~ 88 (271)
T 3tzq_B 15 IITGACGGIGLET-SRVLARAGARVVLADLPETDLAGAAASVGRGAVHHVV-DLT----NEVSVRALIDFTIDTFGRLDI 88 (271)
T ss_dssp EEETTTSHHHHHH-HHHHHHTTCEEEEEECTTSCHHHHHHHHCTTCEEEEC-CTT----CHHHHHHHHHHHHHHHSCCCE
T ss_pred EEECCCcHHHHHH-HHHHHHCCCEEEEEcCCHHHHHHHHHHhCCCeEEEEC-CCC----CHHHHHHHHHHHHHHcCCCCE
Confidence 4666666665442 2334568888877665444444555555666666554 222 45555555432 1124556
Q ss_pred EEeCCCCC-CCCC---CCCHHHHHHHHH
Q 013839 199 LLHPSAHN-PTGV---DPTEEQWREISY 222 (435)
Q Consensus 199 v~~~~p~N-PtG~---~~~~~~l~~i~~ 222 (435)
++.+.... +... ..+.+++++..+
T Consensus 89 lv~nAg~~~~~~~~~~~~~~~~~~~~~~ 116 (271)
T 3tzq_B 89 VDNNAAHSDPADMLVTQMTVDVWDDTFT 116 (271)
T ss_dssp EEECCCCCCTTCCCGGGCCHHHHHHHHH
T ss_pred EEECCCCCCCCCCccccCCHHHHHHHHH
Confidence 66443322 2111 346666666554
No 267
>3bzy_B ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3c00_B 3bzl_C 3bzo_B 3bzv_B 3c03_C 3bzz_B 3bzx_B
Probab=31.68 E-value=26 Score=24.70 Aligned_cols=21 Identities=10% Similarity=-0.134 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhcCceeeeecc
Q 013839 216 QWREISYQFKVKGHFPFFDMA 236 (435)
Q Consensus 216 ~l~~i~~~~~~~~~~vi~Dea 236 (435)
--++|.++|++||++++.|..
T Consensus 28 ~A~~I~~~A~e~~VPi~e~~~ 48 (83)
T 3bzy_B 28 KALQIIKLAELYDIPVIEDIP 48 (83)
T ss_dssp HHHHHHHHHHHTTCCEEECHH
T ss_pred HHHHHHHHHHHcCCCEEeCHH
Confidence 346899999999999999864
No 268
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=31.23 E-value=71 Score=28.19 Aligned_cols=50 Identities=8% Similarity=-0.029 Sum_probs=36.4
Q ss_pred CCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeeec
Q 013839 177 SKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFDM 235 (435)
Q Consensus 177 ~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~De 235 (435)
+|.+|..++.++.. -...+|++.. ..++.++++++.+.|++.|+-+++|-
T Consensus 127 dfi~d~~qi~ea~~---~GAD~VlLi~------a~L~~~~l~~l~~~a~~lGl~~lvev 176 (272)
T 3tsm_A 127 DFLFDPYQVYEARS---WGADCILIIM------ASVDDDLAKELEDTAFALGMDALIEV 176 (272)
T ss_dssp SCCCSTHHHHHHHH---TTCSEEEEET------TTSCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CccCCHHHHHHHHH---cCCCEEEEcc------cccCHHHHHHHHHHHHHcCCeEEEEe
Confidence 46788888887765 3444444422 14578899999999999998888765
No 269
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=30.97 E-value=2.5e+02 Score=24.00 Aligned_cols=99 Identities=11% Similarity=-0.024 Sum_probs=56.6
Q ss_pred EecCCchhHHHHHHHHHHHhCCCCEEE-E--cCC------C-----ChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHH
Q 013839 121 VQALSGTGACRLFAEFQRRFHPESHIY-F--PDP------T-----WSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALM 186 (435)
Q Consensus 121 ~~t~gg~~a~~~~~~~~~~~~~gd~Vl-v--~~p------~-----y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~ 186 (435)
+..+||..+..++ .+ +...|-.|. + .-| . .......++..|+....+++..++ .-..+++.
T Consensus 9 vl~SGGkDSs~al--~~-l~~~G~eV~~L~~~~~~~~~s~~~h~~~~e~a~~~A~~LGIpl~~v~~~g~~--~~e~e~l~ 83 (237)
T 3rjz_A 9 VLYSGGKDSNYAL--YW-AIKNRFSVKFLVTMVSENEESYMYHTINANLTDLQARALGIPLVKGFTQGEK--EKEVEDLK 83 (237)
T ss_dssp EECCSSHHHHHHH--HH-HHHTTCEEEEEEEEECC--------CCSSSHHHHHHHHHTCCEEEEEC--------CHHHHH
T ss_pred EEecCcHHHHHHH--HH-HHHcCCeEEEEEEEcCCCCCccccCCccHHHHHHHHHHcCCCEEEEECCCCc--hHHHHHHH
Confidence 3688998886665 22 234565442 2 111 1 122344667789888777763221 22367787
Q ss_pred HHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeee
Q 013839 187 DDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFF 233 (435)
Q Consensus 187 ~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~ 233 (435)
+.+.+. ....++ +|.+.+..++..+-+.|.+.|+..+.
T Consensus 84 ~~l~~~--~i~~vv-------~Gdi~s~yqr~r~e~vc~~~gl~~~~ 121 (237)
T 3rjz_A 84 RVLSGL--KIQGIV-------AGALASKYQRKRIEKVAKELGLEVYT 121 (237)
T ss_dssp HHHTTS--CCSEEE-------CC---CCSHHHHHHHHHHHTTCEEEC
T ss_pred HHHHhc--CCcEEE-------ECCcchHHHHHHHHHHHHHcCCEEEc
Confidence 877643 334454 68888888888899999999876543
No 270
>2yl6_A Beta-N-acetylhexosaminidase; peptidoglycan-anchor, hydrolase; HET: ETE; 1.60A {Streptococcus pneumoniae} PDB: 2yll_A* 2yl8_A* 3rpm_A*
Probab=30.65 E-value=29 Score=33.07 Aligned_cols=28 Identities=29% Similarity=0.198 Sum_probs=24.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCceeee
Q 013839 206 NPTGVDPTEEQWREISYQFKVKGHFPFF 233 (435)
Q Consensus 206 NPtG~~~~~~~l~~i~~~~~~~~~~vi~ 233 (435)
+|.|-.+|++++++|++.|+++++-||=
T Consensus 83 ~~~~~~YT~~di~eIv~YA~~rgI~VIP 110 (434)
T 2yl6_A 83 DPNGNHLTESQMTDLINYAKDKGIGLIP 110 (434)
T ss_dssp CTTCSCEEHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCCCccCHHHHHHHHHHHHHcCCEEEE
Confidence 4567789999999999999999988774
No 271
>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}
Probab=30.55 E-value=2.6e+02 Score=23.93 Aligned_cols=17 Identities=12% Similarity=-0.025 Sum_probs=8.8
Q ss_pred HHHHhhh--cCCeEEEEec
Q 013839 251 AIRIFLE--DEHLIGCAQS 267 (435)
Q Consensus 251 ~~~~~~~--~~~~~i~~~s 267 (435)
.+..+.+ .+-++++++|
T Consensus 200 ~~~~~~~~~aGad~~VvGS 218 (237)
T 3cu2_A 200 LAKYFKQGTHQIDWLVSGS 218 (237)
T ss_dssp HHHHHHHSSSCCCCEEECG
T ss_pred HHHHHHHhCCCCcEEEEee
Confidence 4444545 5555665553
No 272
>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1
Probab=30.52 E-value=59 Score=32.28 Aligned_cols=34 Identities=6% Similarity=0.054 Sum_probs=29.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCceeeeeccCCCccC
Q 013839 209 GVDPTEEQWREISYQFKVKGHFPFFDMAYQGFAS 242 (435)
Q Consensus 209 G~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~ 242 (435)
....+.++++++++-|+++|+-||.|-++.....
T Consensus 213 p~~Gt~~df~~lv~~~H~~Gi~VilD~V~NH~~~ 246 (583)
T 1ea9_C 213 PQFGDKDTLKKLVDLCHERGIRVLLDAVFNHSGR 246 (583)
T ss_dssp TTTCCHHHHHHHHHHHTTTTCEEEEECCCSBCCT
T ss_pred cccCCHHHHHHHHHHHHHCCCEEEEEEccccCCC
Confidence 3445789999999999999999999999876664
No 273
>2ya0_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; 1.85A {Streptococcus pneumoniae} PDB: 2ya2_A*
Probab=30.47 E-value=30 Score=35.44 Aligned_cols=28 Identities=14% Similarity=0.325 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhcCceeeeeccCCCcc
Q 013839 214 EEQWREISYQFKVKGHFPFFDMAYQGFA 241 (435)
Q Consensus 214 ~~~l~~i~~~~~~~~~~vi~Deay~~~~ 241 (435)
.++++++++-|+++|+-||.|-+|....
T Consensus 254 ~~efk~lV~~~H~~Gi~VilDvV~NH~~ 281 (714)
T 2ya0_A 254 IAEFKNLINEIHKRGMGAILDVVYNHTA 281 (714)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTBCS
T ss_pred HHHHHHHHHHHHHCCCEEEEEeccCccc
Confidence 6899999999999999999999986654
No 274
>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}
Probab=30.37 E-value=1.6e+02 Score=25.27 Aligned_cols=96 Identities=7% Similarity=-0.065 Sum_probs=51.2
Q ss_pred CCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCC
Q 013839 116 GRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDS 195 (435)
Q Consensus 116 ~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~ 195 (435)
.+++ ++.|++.++=... ...+...|-+|++.+-.-... -...+.++..+.. |- -|.+++++.+++. .+
T Consensus 11 GK~a--lVTGas~GIG~ai-a~~la~~Ga~Vv~~~~~~~~~---~~~~~~~~~~~~~-Dv----~~~~~v~~~~~~~-g~ 78 (242)
T 4b79_A 11 GQQV--LVTGGSSGIGAAI-AMQFAELGAEVVALGLDADGV---HAPRHPRIRREEL-DI----TDSQRLQRLFEAL-PR 78 (242)
T ss_dssp TCEE--EEETTTSHHHHHH-HHHHHHTTCEEEEEESSTTST---TSCCCTTEEEEEC-CT----TCHHHHHHHHHHC-SC
T ss_pred CCEE--EEeCCCCHHHHHH-HHHHHHCCCEEEEEeCCHHHH---hhhhcCCeEEEEe-cC----CCHHHHHHHHHhc-CC
Confidence 3455 5666666665553 333566898888765322111 1223445555554 22 2567777777655 34
Q ss_pred cEEEEeCCCCCCCCCCCCHHHHHHHHHH
Q 013839 196 SFFLLHPSAHNPTGVDPTEEQWREISYQ 223 (435)
Q Consensus 196 ~~~v~~~~p~NPtG~~~~~~~l~~i~~~ 223 (435)
..+++.+..-+.....++.++|+++.++
T Consensus 79 iDiLVNNAGi~~~~~~~~~~~w~~~~~v 106 (242)
T 4b79_A 79 LDVLVNNAGISRDREEYDLATFERVLRL 106 (242)
T ss_dssp CSEEEECCCCCCGGGGGSHHHHHHHHHH
T ss_pred CCEEEECCCCCCCcccCCHHHHHHHHHH
Confidence 5666644332333334566777776654
No 275
>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}
Probab=30.18 E-value=1.3e+02 Score=27.27 Aligned_cols=72 Identities=13% Similarity=0.098 Sum_probs=46.4
Q ss_pred CChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCcee
Q 013839 152 TWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFP 231 (435)
Q Consensus 152 ~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~v 231 (435)
.|..+..++..-..+++.+.+ ++ ....+...++++ ....+++ ..|.+ .+.++.++|.+.|+++|..+
T Consensus 55 ~~~~~~~ll~~~~vD~V~i~t--p~--~~H~~~~~~al~---aGkhV~~----EKPla--~~~~e~~~l~~~a~~~g~~~ 121 (352)
T 3kux_A 55 VVSDPQMLFNDPSIDLIVIPT--PN--DTHFPLAQSALA---AGKHVVV----DKPFT--VTLSQANALKEHADDAGLLL 121 (352)
T ss_dssp EESCHHHHHHCSSCCEEEECS--CT--TTHHHHHHHHHH---TTCEEEE----CSSCC--SCHHHHHHHHHHHHHTTCCE
T ss_pred eECCHHHHhcCCCCCEEEEeC--Ch--HHHHHHHHHHHH---CCCcEEE----ECCCc--CCHHHHHHHHHHHHHcCCeE
Confidence 355666666665667777655 22 234556666666 3434444 55644 56889999999999999888
Q ss_pred eeecc
Q 013839 232 FFDMA 236 (435)
Q Consensus 232 i~Dea 236 (435)
.+...
T Consensus 122 ~v~~~ 126 (352)
T 3kux_A 122 SVFHN 126 (352)
T ss_dssp EECCG
T ss_pred EEEee
Confidence 77433
No 276
>1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel, hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1 c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A* 1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A*
Probab=29.45 E-value=60 Score=30.43 Aligned_cols=31 Identities=10% Similarity=0.082 Sum_probs=27.2
Q ss_pred CCHHHHHHHHHHHHhcCceeeeeccCCCccC
Q 013839 212 PTEEQWREISYQFKVKGHFPFFDMAYQGFAS 242 (435)
Q Consensus 212 ~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~ 242 (435)
.+.++++++++-|+++|+-||.|-++...+.
T Consensus 66 Gt~~d~~~lv~~~h~~Gi~VilD~V~NH~~~ 96 (405)
T 1ht6_A 66 GNAAELKSLIGALHGKGVQAIADIVINHRCA 96 (405)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEECCSBCCC
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEECcCcccC
Confidence 4689999999999999999999999866553
No 277
>1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase; HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis} SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A* 1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A*
Probab=28.87 E-value=36 Score=32.46 Aligned_cols=31 Identities=13% Similarity=0.172 Sum_probs=27.0
Q ss_pred CCHHHHHHHHHHHHhcCceeeeeccCCCccC
Q 013839 212 PTEEQWREISYQFKVKGHFPFFDMAYQGFAS 242 (435)
Q Consensus 212 ~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~ 242 (435)
.+.++++++++-|+++|+-||.|-++...+.
T Consensus 62 Gt~~dfk~Lv~~aH~~Gi~VilD~V~NH~~~ 92 (448)
T 1g94_A 62 GNRAQFIDMVNRCSAAGVDIYVDTLINHMAA 92 (448)
T ss_dssp BCHHHHHHHHHHHHHTTCEEEEEEECSEECS
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEEeeccccC
Confidence 3689999999999999999999999865554
No 278
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=28.71 E-value=1.6e+02 Score=26.62 Aligned_cols=73 Identities=7% Similarity=0.051 Sum_probs=47.9
Q ss_pred CChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCcee
Q 013839 152 TWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFP 231 (435)
Q Consensus 152 ~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~v 231 (435)
.|..+..++.....+++.+-+ ++ ....+...+++. ....+++ ..|.+ .+.++.+++.+.|+++++.+
T Consensus 54 ~~~~~~~~l~~~~~D~V~i~t--p~--~~h~~~~~~al~---~gk~vl~----EKP~~--~~~~~~~~l~~~a~~~~~~~ 120 (354)
T 3db2_A 54 GDATMEALLAREDVEMVIITV--PN--DKHAEVIEQCAR---SGKHIYV----EKPIS--VSLDHAQRIDQVIKETGVKF 120 (354)
T ss_dssp CCSSHHHHHHCSSCCEEEECS--CT--TSHHHHHHHHHH---TTCEEEE----ESSSC--SSHHHHHHHHHHHHHHCCCE
T ss_pred CcCCHHHHhcCCCCCEEEEeC--Ch--HHHHHHHHHHHH---cCCEEEE----ccCCC--CCHHHHHHHHHHHHHcCCeE
Confidence 466677777655667777655 22 234555666666 3334444 45554 46789999999999999988
Q ss_pred eeeccC
Q 013839 232 FFDMAY 237 (435)
Q Consensus 232 i~Deay 237 (435)
.+...+
T Consensus 121 ~v~~~~ 126 (354)
T 3db2_A 121 LCGHSS 126 (354)
T ss_dssp EEECGG
T ss_pred EEeech
Confidence 887654
No 279
>1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose, (beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A*
Probab=28.68 E-value=46 Score=31.64 Aligned_cols=32 Identities=16% Similarity=0.184 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHHHHhcCceeeeeccCCCccCC
Q 013839 212 PTEEQWREISYQFKVKGHFPFFDMAYQGFASG 243 (435)
Q Consensus 212 ~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~ 243 (435)
.+.++++++++-|+++|+-||.|-++...+.+
T Consensus 67 Gt~~df~~lv~~aH~~Gi~VilD~V~NH~~~~ 98 (441)
T 1lwj_A 67 GSEREFKEMIEAFHDSGIKVVLDLPIHHTGFL 98 (441)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEECTTBCCTT
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEeCCCcccCc
Confidence 35899999999999999999999998766643
No 280
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=28.50 E-value=2.5e+02 Score=23.81 Aligned_cols=94 Identities=5% Similarity=-0.103 Sum_probs=47.6
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHH---HHhhCCCCeeeeeecCCCCCCcChHhHHHHhh---cCCCC
Q 013839 122 QALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHN---IWRDAQIPERTYHYYDPDSKSLDFAALMDDIK---NAPDS 195 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~---~~~~~ 195 (435)
++.||++++-... ...+...|.+|++.+-.-..... .++..|.++..+.. |-. |.+++++.++ +. .+
T Consensus 11 lVTGas~GIG~ai-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-Dv~----~~~~v~~~~~~~~~~-g~ 83 (252)
T 3h7a_A 11 AVIGAGDYIGAEI-AKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSL-DAR----NEDEVTAFLNAADAH-AP 83 (252)
T ss_dssp EEECCSSHHHHHH-HHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCEEEEEEC-CTT----CHHHHHHHHHHHHHH-SC
T ss_pred EEECCCchHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEC-cCC----CHHHHHHHHHHHHhh-CC
Confidence 4566666655542 23345678888776543333322 23344666666655 222 4555554443 22 35
Q ss_pred cEEEEeCCCCCCCCC--CCCHHHHHHHHH
Q 013839 196 SFFLLHPSAHNPTGV--DPTEEQWREISY 222 (435)
Q Consensus 196 ~~~v~~~~p~NPtG~--~~~~~~l~~i~~ 222 (435)
..+++.+....+.+. ..+.+++++..+
T Consensus 84 id~lv~nAg~~~~~~~~~~~~~~~~~~~~ 112 (252)
T 3h7a_A 84 LEVTIFNVGANVNFPILETTDRVFRKVWE 112 (252)
T ss_dssp EEEEEECCCCCCCCCGGGCCHHHHHHHHH
T ss_pred ceEEEECCCcCCCCCcccCCHHHHHHHHH
Confidence 566665443333222 245666665554
No 281
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0
Probab=28.47 E-value=2.1e+02 Score=24.09 Aligned_cols=73 Identities=4% Similarity=-0.121 Sum_probs=39.9
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEe
Q 013839 122 QALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLH 201 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~ 201 (435)
++.||++.+-... ...+...|.+|++.+-.-.......+..+.++..+.. |- -|.+.+.+.+++. .+..+++.
T Consensus 18 lVTGas~gIG~~~-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-D~----~~~~~~~~~~~~~-~~id~li~ 90 (249)
T 3f9i_A 18 LITGASSGIGSAI-ARLLHKLGSKVIISGSNEEKLKSLGNALKDNYTIEVC-NL----ANKEECSNLISKT-SNLDILVC 90 (249)
T ss_dssp EETTTTSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHHHHCSSEEEEEC-CT----TSHHHHHHHHHTC-SCCSEEEE
T ss_pred EEECCCChHHHHH-HHHHHHCCCEEEEEcCCHHHHHHHHHHhccCccEEEc-CC----CCHHHHHHHHHhc-CCCCEEEE
Confidence 4667777665542 2334567888887664433333444444434444433 22 2667777777654 24556664
No 282
>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A
Probab=27.95 E-value=50 Score=32.79 Aligned_cols=34 Identities=9% Similarity=0.053 Sum_probs=28.8
Q ss_pred CCCCHHHHHHHHHHHHhcCceeeeeccCCCccCC
Q 013839 210 VDPTEEQWREISYQFKVKGHFPFFDMAYQGFASG 243 (435)
Q Consensus 210 ~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~ 243 (435)
...+.++++++++-|+++|+-||.|-++.....+
T Consensus 215 ~~Gt~~dfk~lv~~~H~~Gi~VilD~V~NH~~~~ 248 (585)
T 1wzl_A 215 QFGDLPTFRRLVDEAHRRGIKIILDAVFNHAGDQ 248 (585)
T ss_dssp TTCCHHHHHHHHHHHHTTTCEEEEEECCSBCCTT
T ss_pred ccCCHHHHHHHHHHHHHCCCEEEEEEcCCcCCCc
Confidence 3446899999999999999999999998776643
No 283
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Probab=27.88 E-value=1.4e+02 Score=25.59 Aligned_cols=95 Identities=12% Similarity=0.018 Sum_probs=47.5
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhc---CCCCcEE
Q 013839 122 QALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKN---APDSSFF 198 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~---~~~~~~~ 198 (435)
++.||++.+-... ...+...|.+|++.+-.-.......+..+.++..+.. |-. |.+++++.+++ .-.+..+
T Consensus 12 lVTGas~gIG~a~-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-Dv~----~~~~v~~~~~~~~~~~g~id~ 85 (255)
T 4eso_A 12 IVIGGTHGMGLAT-VRRLVEGGAEVLLTGRNESNIARIREEFGPRVHALRS-DIA----DLNEIAVLGAAAGQTLGAIDL 85 (255)
T ss_dssp EEETCSSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEEC-CTT----CHHHHHHHHHHHHHHHSSEEE
T ss_pred EEECCCCHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHhCCcceEEEc-cCC----CHHHHHHHHHHHHHHhCCCCE
Confidence 4566666665542 2335568888887664433334444444555655554 222 45555544432 1134566
Q ss_pred EEeCCCCCCCCC--CCCHHHHHHHHH
Q 013839 199 LLHPSAHNPTGV--DPTEEQWREISY 222 (435)
Q Consensus 199 v~~~~p~NPtG~--~~~~~~l~~i~~ 222 (435)
++.+....+.+. ..+.+++++..+
T Consensus 86 lv~nAg~~~~~~~~~~~~~~~~~~~~ 111 (255)
T 4eso_A 86 LHINAGVSELEPFDQVSEASYDRQFA 111 (255)
T ss_dssp EEECCCCCCCBCGGGCCHHHHHHHHH
T ss_pred EEECCCCCCCCChhhCCHHHHHHHHH
Confidence 664433222221 235666666554
No 284
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Probab=27.88 E-value=2.9e+02 Score=23.77 Aligned_cols=95 Identities=8% Similarity=-0.040 Sum_probs=48.6
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhc---CCCCcEE
Q 013839 122 QALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKN---APDSSFF 198 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~---~~~~~~~ 198 (435)
++.||++.+-... ...+...|.+|++.+-.-..........+.++..+.. |-. |.+++++.+++ .-.+..+
T Consensus 32 lVTGas~GIG~ai-a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-Dv~----d~~~v~~~~~~~~~~~g~iD~ 105 (272)
T 4dyv_A 32 IVTGAGSGVGRAV-AVALAGAGYGVALAGRRLDALQETAAEIGDDALCVPT-DVT----DPDSVRALFTATVEKFGRVDV 105 (272)
T ss_dssp EETTTTSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHHHHTSCCEEEEC-CTT----SHHHHHHHHHHHHHHHSCCCE
T ss_pred EEeCCCcHHHHHH-HHHHHHCCCEEEEEECCHHHHHHHHHHhCCCeEEEEe-cCC----CHHHHHHHHHHHHHHcCCCCE
Confidence 5667777665542 2334568888877654433444444555555655554 222 55555555432 1124566
Q ss_pred EEeCCCCC-CCCC--CCCHHHHHHHHH
Q 013839 199 LLHPSAHN-PTGV--DPTEEQWREISY 222 (435)
Q Consensus 199 v~~~~p~N-PtG~--~~~~~~l~~i~~ 222 (435)
++.+.... +.+. ..+.++++++.+
T Consensus 106 lVnnAg~~~~~~~~~~~~~~~~~~~~~ 132 (272)
T 4dyv_A 106 LFNNAGTGAPAIPMEDLTFAQWKQVVD 132 (272)
T ss_dssp EEECCCCCCCSSCGGGCCHHHHHHHHH
T ss_pred EEECCCCCCCCCChhhCCHHHHHHHHH
Confidence 66443322 1111 246666666554
No 285
>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}
Probab=27.52 E-value=1.4e+02 Score=26.28 Aligned_cols=96 Identities=11% Similarity=-0.066 Sum_probs=48.5
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHh---hCC-CCeeeeeecCCCCCCcChHhHHHHhhc---CCC
Q 013839 122 QALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWR---DAQ-IPERTYHYYDPDSKSLDFAALMDDIKN---APD 194 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~---~~g-~~~~~v~~~~~~~~~~d~e~l~~~i~~---~~~ 194 (435)
++.||++.+-... ...+...|.+|++.+-.-........ ..+ .++..+.. |- -|.+++++.+++ .-.
T Consensus 45 lVTGas~GIG~ai-a~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~-Dv----~d~~~v~~~~~~~~~~~g 118 (293)
T 3rih_A 45 LVTGGTKGIGRGI-ATVFARAGANVAVAARSPRELSSVTAELGELGAGNVIGVRL-DV----SDPGSCADAARTVVDAFG 118 (293)
T ss_dssp EETTTTSHHHHHH-HHHHHHTTCEEEEEESSGGGGHHHHHHHTTSSSSCEEEEEC-CT----TCHHHHHHHHHHHHHHHS
T ss_pred EEeCCCcHHHHHH-HHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCcEEEEEE-eC----CCHHHHHHHHHHHHHHcC
Confidence 5667777665542 23345688888776644333333322 333 35555554 22 245555554432 112
Q ss_pred CcEEEEeCCCCCCCCC--CCCHHHHHHHHHH
Q 013839 195 SSFFLLHPSAHNPTGV--DPTEEQWREISYQ 223 (435)
Q Consensus 195 ~~~~v~~~~p~NPtG~--~~~~~~l~~i~~~ 223 (435)
+..+++.+....+.+. ..+.++++++.+.
T Consensus 119 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~v 149 (293)
T 3rih_A 119 ALDVVCANAGIFPEARLDTMTPEQLSEVLDV 149 (293)
T ss_dssp CCCEEEECCCCCCCCCTTTCCHHHHHHHHHH
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 4566665443333332 3467777766653
No 286
>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2
Probab=27.23 E-value=1e+02 Score=26.14 Aligned_cols=94 Identities=7% Similarity=-0.065 Sum_probs=43.4
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhc---CCCCcEE
Q 013839 122 QALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKN---APDSSFF 198 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~---~~~~~~~ 198 (435)
++.|+++.+-... ...+...|.+|++.+-.-..........| +..+.. |- -|.+++++.+++ .-.+..+
T Consensus 9 lVTGas~giG~~i-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~-D~----~~~~~~~~~~~~~~~~~g~id~ 80 (245)
T 1uls_A 9 LITGAAHGIGRAT-LELFAKEGARLVACDIEEGPLREAAEAVG--AHPVVM-DV----ADPASVERGFAEALAHLGRLDG 80 (245)
T ss_dssp EEESTTSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHHTTT--CEEEEC-CT----TCHHHHHHHHHHHHHHHSSCCE
T ss_pred EEECCCCHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHcC--CEEEEe-cC----CCHHHHHHHHHHHHHHcCCCCE
Confidence 4567766665542 23345678888765433222233333334 333333 22 245555555442 1123566
Q ss_pred EEeCCCCCCCCC--CCCHHHHHHHHHH
Q 013839 199 LLHPSAHNPTGV--DPTEEQWREISYQ 223 (435)
Q Consensus 199 v~~~~p~NPtG~--~~~~~~l~~i~~~ 223 (435)
++.+....+.+. ..+.+++++..+.
T Consensus 81 lvn~Ag~~~~~~~~~~~~~~~~~~~~~ 107 (245)
T 1uls_A 81 VVHYAGITRDNFHWKMPLEDWELVLRV 107 (245)
T ss_dssp EEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred EEECCCCCCCCChhhCCHHHHHHHHHH
Confidence 664433222221 2356666665543
No 287
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E
Probab=27.15 E-value=2.4e+02 Score=23.83 Aligned_cols=95 Identities=8% Similarity=-0.009 Sum_probs=45.4
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhc---CCCCcEE
Q 013839 122 QALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKN---APDSSFF 198 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~---~~~~~~~ 198 (435)
++.||++.+-... ...+...|.+|++.+-.-.......+..+.+...+.. |- -|.+++++.+++ .-.+..+
T Consensus 13 lVTGas~gIG~a~-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-Dv----~d~~~v~~~~~~~~~~~g~iD~ 86 (248)
T 3op4_A 13 LVTGASRGIGKAI-AELLAERGAKVIGTATSESGAQAISDYLGDNGKGMAL-NV----TNPESIEAVLKAITDEFGGVDI 86 (248)
T ss_dssp EESSCSSHHHHHH-HHHHHHTTCEEEEEESSHHHHHHHHHHHGGGEEEEEC-CT----TCHHHHHHHHHHHHHHHCCCSE
T ss_pred EEeCCCCHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHhcccceEEEE-eC----CCHHHHHHHHHHHHHHcCCCCE
Confidence 5667766665542 2335568888877654333333333333333444443 22 245555555442 1124556
Q ss_pred EEeCCCCCCCCC--CCCHHHHHHHHH
Q 013839 199 LLHPSAHNPTGV--DPTEEQWREISY 222 (435)
Q Consensus 199 v~~~~p~NPtG~--~~~~~~l~~i~~ 222 (435)
++.+....+.+. ..+.+++++..+
T Consensus 87 lv~nAg~~~~~~~~~~~~~~~~~~~~ 112 (248)
T 3op4_A 87 LVNNAGITRDNLLMRMKEEEWSDIME 112 (248)
T ss_dssp EEECCCCCCCCCGGGCCHHHHHHHHH
T ss_pred EEECCCCCCCCChhhCCHHHHHHHHH
Confidence 664433222222 235666666554
No 288
>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}
Probab=26.85 E-value=3e+02 Score=23.62 Aligned_cols=95 Identities=6% Similarity=0.029 Sum_probs=49.0
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHH---HhhCCCCeeeeeecCCCCCCcChHhHHHHhhc---CCCC
Q 013839 122 QALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNI---WRDAQIPERTYHYYDPDSKSLDFAALMDDIKN---APDS 195 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~---~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~---~~~~ 195 (435)
++.||++.+-... ...+...|.+|++.+-.-...... ++..|.++..+.. |- -|.+++++.+++ ...+
T Consensus 30 lVTGas~gIG~ai-a~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~-Dv----~d~~~v~~~~~~~~~~~g~ 103 (271)
T 4ibo_A 30 LVTGSSRGLGRAM-AEGLAVAGARILINGTDPSRVAQTVQEFRNVGHDAEAVAF-DV----TSESEIIEAFARLDEQGID 103 (271)
T ss_dssp EETTCSSHHHHHH-HHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCC-CT----TCHHHHHHHHHHHHHHTCC
T ss_pred EEeCCCcHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEc-CC----CCHHHHHHHHHHHHHHCCC
Confidence 5667776665542 233556888888876443333222 2344666666654 22 255555555442 1234
Q ss_pred cEEEEeCCCCCCCCC--CCCHHHHHHHHH
Q 013839 196 SFFLLHPSAHNPTGV--DPTEEQWREISY 222 (435)
Q Consensus 196 ~~~v~~~~p~NPtG~--~~~~~~l~~i~~ 222 (435)
..+++.+....+.+. ..+.+++++..+
T Consensus 104 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~ 132 (271)
T 4ibo_A 104 VDILVNNAGIQFRKPMIELETADWQRVID 132 (271)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHH
T ss_pred CCEEEECCCCCCCCCchhCCHHHHHHHHH
Confidence 566665433222222 246666666555
No 289
>1mxg_A Alpha amylase; hyperthermostable, family 13 glycosyl hydrola (beta/alpha)8-barrel, hydrolase; HET: ACR ETE; 1.60A {Pyrococcus woesei} SCOP: b.71.1.1 c.1.8.1 PDB: 1mwo_A* 1mxd_A* 3qgv_A*
Probab=26.59 E-value=54 Score=31.14 Aligned_cols=30 Identities=13% Similarity=0.024 Sum_probs=26.6
Q ss_pred CCHHHHHHHHHHHHhcCceeeeeccCCCcc
Q 013839 212 PTEEQWREISYQFKVKGHFPFFDMAYQGFA 241 (435)
Q Consensus 212 ~~~~~l~~i~~~~~~~~~~vi~Deay~~~~ 241 (435)
.+.++++++++-|+++|+-||.|-++....
T Consensus 84 Gt~~df~~lv~~~H~~Gi~VilD~V~NH~~ 113 (435)
T 1mxg_A 84 GSKEELVRLIQTAHAYGIKVIADVVINHRA 113 (435)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEECCSBCC
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEECccccc
Confidence 468999999999999999999999976554
No 290
>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1 c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A* 1qi4_A* 2amg_A 1qpk_A*
Probab=26.37 E-value=53 Score=32.14 Aligned_cols=32 Identities=16% Similarity=0.244 Sum_probs=27.7
Q ss_pred CCHHHHHHHHHHHHhcCceeeeeccCCCccCC
Q 013839 212 PTEEQWREISYQFKVKGHFPFFDMAYQGFASG 243 (435)
Q Consensus 212 ~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~ 243 (435)
.+.++++++++-|+++|+-||.|-++.....+
T Consensus 90 Gt~~dfk~Lv~~aH~~GI~VilD~V~NHt~~~ 121 (527)
T 1gcy_A 90 GSDAQLRQAASALGGAGVKVLYDVVPNHMNRG 121 (527)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEECCSBCCTT
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEEeecCcCCC
Confidence 36899999999999999999999998665543
No 291
>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A*
Probab=26.32 E-value=57 Score=32.40 Aligned_cols=31 Identities=13% Similarity=0.165 Sum_probs=27.6
Q ss_pred CCHHHHHHHHHHHHhcCceeeeeccCCCccC
Q 013839 212 PTEEQWREISYQFKVKGHFPFFDMAYQGFAS 242 (435)
Q Consensus 212 ~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~ 242 (435)
.+.++++++++-|+++|+-||.|-++.....
T Consensus 220 Gt~~df~~lv~~~H~~Gi~VilD~V~NH~~~ 250 (588)
T 1j0h_A 220 GDKETLKTLIDRCHEKGIRVMLDAVFNHCGY 250 (588)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEECCSBCCT
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEECcCcCcc
Confidence 4589999999999999999999999877654
No 292
>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}
Probab=26.31 E-value=2.5e+02 Score=24.10 Aligned_cols=98 Identities=12% Similarity=0.020 Sum_probs=54.1
Q ss_pred CCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCC-hhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCC
Q 013839 116 GRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTW-SNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPD 194 (435)
Q Consensus 116 ~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y-~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~ 194 (435)
.++. ++.||+.++=... ...+...|-+|++.+-.- ......++..|.+...+.. |-. |.+..++.++. .
T Consensus 9 GKva--lVTGas~GIG~ai-A~~la~~Ga~Vvi~~r~~~~~~~~~~~~~g~~~~~~~~-Dv~----d~~~v~~~~~~--g 78 (247)
T 4hp8_A 9 GRKA--LVTGANTGLGQAI-AVGLAAAGAEVVCAARRAPDETLDIIAKDGGNASALLI-DFA----DPLAAKDSFTD--A 78 (247)
T ss_dssp TCEE--EETTTTSHHHHHH-HHHHHHTTCEEEEEESSCCHHHHHHHHHTTCCEEEEEC-CTT----STTTTTTSSTT--T
T ss_pred CCEE--EEeCcCCHHHHHH-HHHHHHcCCEEEEEeCCcHHHHHHHHHHhCCcEEEEEc-cCC----CHHHHHHHHHh--C
Confidence 3555 5666666665553 333566888777655321 2344556677888777765 222 33344444432 3
Q ss_pred CcEEEEeCCCCCCCCC--CCCHHHHHHHHHH
Q 013839 195 SSFFLLHPSAHNPTGV--DPTEEQWREISYQ 223 (435)
Q Consensus 195 ~~~~v~~~~p~NPtG~--~~~~~~l~~i~~~ 223 (435)
+..+++.+..-++.+. .++.++|+++.++
T Consensus 79 ~iDiLVNNAGi~~~~~~~~~~~~~w~~~~~v 109 (247)
T 4hp8_A 79 GFDILVNNAGIIRRADSVEFSELDWDEVMDV 109 (247)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred CCCEEEECCCCCCCCCcccccHHHHHHHHHH
Confidence 4566665443333322 3577888887765
No 293
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0
Probab=26.20 E-value=2.4e+02 Score=24.24 Aligned_cols=96 Identities=14% Similarity=0.030 Sum_probs=46.9
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEEEcCCC------------C-hhhH---HHHhhCCCCeeeeeecCCCCCCcChHhH
Q 013839 122 QALSGTGACRLFAEFQRRFHPESHIYFPDPT------------W-SNHH---NIWRDAQIPERTYHYYDPDSKSLDFAAL 185 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~------------y-~~~~---~~~~~~g~~~~~v~~~~~~~~~~d~e~l 185 (435)
++.|+++++-... ...+...|.+|++.+-. - .... ..+...+.++..+.. |-. |.+++
T Consensus 15 lVTGas~GIG~a~-a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-D~~----~~~~v 88 (277)
T 3tsc_A 15 FITGAARGQGRAH-AVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVV-DTR----DFDRL 88 (277)
T ss_dssp EEESTTSHHHHHH-HHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEEC-CTT----CHHHH
T ss_pred EEECCccHHHHHH-HHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEC-CCC----CHHHH
Confidence 5666766665442 23355688888765320 1 1111 123345666666655 222 55666
Q ss_pred HHHhhc---CCCCcEEEEeCCCCCCCCC--CCCHHHHHHHHHH
Q 013839 186 MDDIKN---APDSSFFLLHPSAHNPTGV--DPTEEQWREISYQ 223 (435)
Q Consensus 186 ~~~i~~---~~~~~~~v~~~~p~NPtG~--~~~~~~l~~i~~~ 223 (435)
++.+++ .-.+..+++.+....+.+. ..+.+++++..+.
T Consensus 89 ~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~v 131 (277)
T 3tsc_A 89 RKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDI 131 (277)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHH
Confidence 555542 1124566665443332222 3466666665553
No 294
>2z1k_A (NEO)pullulanase; hydrolase, structural genomics, NPPSFA, national project on structural and functional analyses; HET: GLC; 2.30A {Thermus thermophilus}
Probab=26.13 E-value=54 Score=31.45 Aligned_cols=30 Identities=13% Similarity=0.108 Sum_probs=26.5
Q ss_pred CHHHHHHHHHHHHhcCceeeeeccCCCccC
Q 013839 213 TEEQWREISYQFKVKGHFPFFDMAYQGFAS 242 (435)
Q Consensus 213 ~~~~l~~i~~~~~~~~~~vi~Deay~~~~~ 242 (435)
+.++++++++-|+++|+-||.|-++...+.
T Consensus 95 t~~df~~lv~~~h~~Gi~VilD~V~NH~~~ 124 (475)
T 2z1k_A 95 GNEALRHLLEVAHAHGVRVILDGVFNHTGR 124 (475)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSBCCT
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEecccccC
Confidence 579999999999999999999999876653
No 295
>2vt1_B Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.00A {Shigella flexneri} SCOP: d.367.1.1
Probab=25.83 E-value=37 Score=24.47 Aligned_cols=22 Identities=9% Similarity=-0.133 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHhcCceeeeecc
Q 013839 215 EQWREISYQFKVKGHFPFFDMA 236 (435)
Q Consensus 215 ~~l~~i~~~~~~~~~~vi~Dea 236 (435)
.--++|.++|+++|++|+.|..
T Consensus 27 ~~A~~I~e~A~e~gVPi~e~~~ 48 (93)
T 2vt1_B 27 QCALAVRKYANEVGIPTVRDVK 48 (93)
T ss_dssp HHHHHHHHHHHHTTCCEEECHH
T ss_pred HHHHHHHHHHHHcCCCEEECHH
Confidence 3456899999999999999864
No 296
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A
Probab=25.82 E-value=2.7e+02 Score=23.90 Aligned_cols=95 Identities=8% Similarity=-0.060 Sum_probs=47.6
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEEEcCC-CChhh---HHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcC---CC
Q 013839 122 QALSGTGACRLFAEFQRRFHPESHIYFPDP-TWSNH---HNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNA---PD 194 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p-~y~~~---~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~---~~ 194 (435)
++.|+++.+-... ...+...|.+|++..- .-... ...++..|.++..+.. |-. |.+++++.+++. -.
T Consensus 22 lVTGas~gIG~ai-a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-Dv~----~~~~v~~~~~~~~~~~g 95 (270)
T 3is3_A 22 LVTGSGRGIGAAV-AVHLGRLGAKVVVNYANSTKDAEKVVSEIKALGSDAIAIKA-DIR----QVPEIVKLFDQAVAHFG 95 (270)
T ss_dssp EESCTTSHHHHHH-HHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEEC-CTT----SHHHHHHHHHHHHHHHS
T ss_pred EEECCCchHHHHH-HHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEc-CCC----CHHHHHHHHHHHHHHcC
Confidence 5667776665542 2335568888876432 11111 2233455767777665 222 555665554421 12
Q ss_pred CcEEEEeCCCCCCCCC--CCCHHHHHHHHH
Q 013839 195 SSFFLLHPSAHNPTGV--DPTEEQWREISY 222 (435)
Q Consensus 195 ~~~~v~~~~p~NPtG~--~~~~~~l~~i~~ 222 (435)
+..+++.+....+.+. ..+.+++++..+
T Consensus 96 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~ 125 (270)
T 3is3_A 96 HLDIAVSNSGVVSFGHLKDVTEEEFDRVFS 125 (270)
T ss_dssp CCCEEECCCCCCCCCCGGGCCHHHHHHHHH
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHH
Confidence 4566664333222222 236666666554
No 297
>1wza_A Alpha-amylase A; hydrolase, halophilic, thermophilic; 1.60A {Halothermothrix orenii} SCOP: b.71.1.1 c.1.8.1
Probab=25.68 E-value=58 Score=31.40 Aligned_cols=30 Identities=13% Similarity=0.166 Sum_probs=26.5
Q ss_pred CHHHHHHHHHHHHhcCceeeeeccCCCccC
Q 013839 213 TEEQWREISYQFKVKGHFPFFDMAYQGFAS 242 (435)
Q Consensus 213 ~~~~l~~i~~~~~~~~~~vi~Deay~~~~~ 242 (435)
+.++++++++-|+++|+-||.|-++...+.
T Consensus 80 t~~d~~~Lv~~aH~~Gi~VilD~V~NH~s~ 109 (488)
T 1wza_A 80 TLEDFHKLVEAAHQRGIKVIIDLPINHTSE 109 (488)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEECCCSBCCT
T ss_pred CHHHHHHHHHHHHHCCCEEEEEeccccccC
Confidence 589999999999999999999999866553
No 298
>4aie_A Glucan 1,6-alpha-glucosidase; hydrolase, glycoside hydrolase 13; HET: MES GOL; 2.05A {Lactobacillus acidophilus ncfm}
Probab=25.57 E-value=55 Score=31.96 Aligned_cols=30 Identities=13% Similarity=-0.006 Sum_probs=26.9
Q ss_pred CCHHHHHHHHHHHHhcCceeeeeccCCCcc
Q 013839 212 PTEEQWREISYQFKVKGHFPFFDMAYQGFA 241 (435)
Q Consensus 212 ~~~~~l~~i~~~~~~~~~~vi~Deay~~~~ 241 (435)
.+.++++++++-|+++|+-||.|-++...+
T Consensus 77 Gt~~dfk~Lv~~aH~~Gi~VilD~V~NHts 106 (549)
T 4aie_A 77 GTMADMDELISKAKEHHIKIVMDLVVNHTS 106 (549)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEECCSBCC
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEECccCCc
Confidence 468999999999999999999999986654
No 299
>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X
Probab=25.45 E-value=1.5e+02 Score=26.57 Aligned_cols=72 Identities=15% Similarity=0.183 Sum_probs=47.6
Q ss_pred CChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCcee
Q 013839 152 TWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFP 231 (435)
Q Consensus 152 ~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~v 231 (435)
.|..+..++..-..+++.+.+ ++ ....+...++++ ....+++ .-|.. .+.++.++|.+.|+++++.+
T Consensus 54 ~~~~~~~ll~~~~vD~V~i~t--p~--~~H~~~~~~al~---~GkhVl~----EKP~a--~~~~e~~~l~~~a~~~~~~~ 120 (334)
T 3ohs_X 54 AYGSYEELAKDPNVEVAYVGT--QH--PQHKAAVMLCLA---AGKAVLC----EKPMG--VNAAEVREMVTEARSRGLFL 120 (334)
T ss_dssp EESSHHHHHHCTTCCEEEECC--CG--GGHHHHHHHHHH---TTCEEEE----ESSSS--SSHHHHHHHHHHHHHTTCCE
T ss_pred ccCCHHHHhcCCCCCEEEECC--Cc--HHHHHHHHHHHh---cCCEEEE----ECCCC--CCHHHHHHHHHHHHHhCCEE
Confidence 356677777766677777755 22 234556666666 3434443 45554 46889999999999999888
Q ss_pred eeecc
Q 013839 232 FFDMA 236 (435)
Q Consensus 232 i~Dea 236 (435)
.+...
T Consensus 121 ~v~~~ 125 (334)
T 3ohs_X 121 MEAIW 125 (334)
T ss_dssp EEECG
T ss_pred EEEEh
Confidence 87654
No 300
>2guy_A Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; HET: NAG BMA; 1.59A {Aspergillus oryzae} SCOP: b.71.1.1 c.1.8.1 PDB: 2gvy_A* 3kwx_A* 6taa_A 7taa_A* 2taa_A
Probab=25.43 E-value=52 Score=31.60 Aligned_cols=29 Identities=14% Similarity=0.344 Sum_probs=26.1
Q ss_pred CHHHHHHHHHHHHhcCceeeeeccCCCcc
Q 013839 213 TEEQWREISYQFKVKGHFPFFDMAYQGFA 241 (435)
Q Consensus 213 ~~~~l~~i~~~~~~~~~~vi~Deay~~~~ 241 (435)
+.++++++++-|+++|+-||.|-++....
T Consensus 96 t~~df~~lv~~~H~~Gi~VilD~V~NH~~ 124 (478)
T 2guy_A 96 TADDLKALSSALHERGMYLMVDVVANHMG 124 (478)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSBCC
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECcccCC
Confidence 58999999999999999999999986554
No 301
>1f2d_A 1-aminocyclopropane-1-carboxylate deaminase; carbon-carbon L open twisted alpha/beta, lyase; HET: PLP; 2.00A {Williopsis saturnus} SCOP: c.79.1.1 PDB: 1j0e_A* 1j0d_A* 1j0c_A*
Probab=24.99 E-value=1.7e+02 Score=26.48 Aligned_cols=17 Identities=12% Similarity=-0.060 Sum_probs=13.9
Q ss_pred hHHHHhhCCCCeeeeee
Q 013839 156 HHNIWRDAQIPERTYHY 172 (435)
Q Consensus 156 ~~~~~~~~g~~~~~v~~ 172 (435)
....++.+|++++.++-
T Consensus 118 k~~~~~~~GA~v~~~~~ 134 (341)
T 1f2d_A 118 NIELSRIMGADVRVIED 134 (341)
T ss_dssp HHHHHHHTTCEEEECCC
T ss_pred cHHHHHhCCCEEEEeCC
Confidence 56778899999998864
No 302
>1jae_A Alpha-amylase; glycosidase, carbohydrate metabolism, 4-glucan-4-glucanohydrolase, hydrolase; 1.65A {Tenebrio molitor} SCOP: b.71.1.1 c.1.8.1 PDB: 1clv_A 1tmq_A 1viw_A*
Probab=24.94 E-value=50 Score=31.74 Aligned_cols=32 Identities=9% Similarity=0.151 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHHHHhcCceeeeeccCCCccCC
Q 013839 212 PTEEQWREISYQFKVKGHFPFFDMAYQGFASG 243 (435)
Q Consensus 212 ~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~ 243 (435)
.+.++++++++-|+++|+-||.|-++...+..
T Consensus 72 Gt~~d~~~lv~~~h~~Gi~VilD~V~NH~~~~ 103 (471)
T 1jae_A 72 GDESAFTDMTRRCNDAGVRIYVDAVINHMTGM 103 (471)
T ss_dssp EEHHHHHHHHHHHHHTTCEEEEEECCSBCCSS
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEEecccccCC
Confidence 35899999999999999999999998665543
No 303
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=24.91 E-value=3.1e+02 Score=23.08 Aligned_cols=31 Identities=19% Similarity=0.129 Sum_probs=14.2
Q ss_pred CCCC--CCCCCHHH---HHHHHHHHHhc--Cceeeeec
Q 013839 205 HNPT--GVDPTEEQ---WREISYQFKVK--GHFPFFDM 235 (435)
Q Consensus 205 ~NPt--G~~~~~~~---l~~i~~~~~~~--~~~vi~De 235 (435)
-||+ |..+...- ++++.++..++ ++.+.+|-
T Consensus 143 v~pg~ggq~~~~~~~~~i~~lr~~~~~~~~~~~I~v~G 180 (230)
T 1tqj_A 143 VNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDG 180 (230)
T ss_dssp SCC----CCCCGGGHHHHHHHHHHHHHHTCCCEEEEES
T ss_pred eccccCCccCcHHHHHHHHHHHHHHHhcCCCCcEEEEC
Confidence 3555 55554333 44444444332 67777763
No 304
>3t7y_A YOP proteins translocation protein U; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta; 2.10A {Chlamydia trachomatis} SCOP: d.367.1.0
Probab=24.86 E-value=35 Score=24.83 Aligned_cols=21 Identities=10% Similarity=-0.021 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhcCceeeeecc
Q 013839 216 QWREISYQFKVKGHFPFFDMA 236 (435)
Q Consensus 216 ~l~~i~~~~~~~~~~vi~Dea 236 (435)
--++|.++|++||++++.|..
T Consensus 43 ~A~~I~~~A~e~gVPi~e~~~ 63 (97)
T 3t7y_A 43 RAKRIIAEAEKYGVPIMRNVP 63 (97)
T ss_dssp HHHHHHHHHHHHTCCEEECHH
T ss_pred HHHHHHHHHHHcCCeEEECHH
Confidence 456899999999999999865
No 305
>2ya1_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; HET: BGC GLC; 2.25A {Streptococcus pneumoniae}
Probab=24.83 E-value=43 Score=35.87 Aligned_cols=28 Identities=14% Similarity=0.325 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhcCceeeeeccCCCcc
Q 013839 214 EEQWREISYQFKVKGHFPFFDMAYQGFA 241 (435)
Q Consensus 214 ~~~l~~i~~~~~~~~~~vi~Deay~~~~ 241 (435)
.++++++++.|+++|+-||.|-+|....
T Consensus 561 ~~efk~lV~~~H~~GI~VIlDvV~NHt~ 588 (1014)
T 2ya1_A 561 IAEFKNLINEIHKRGMGAILDVVYNHTA 588 (1014)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEECTTCCS
T ss_pred HHHHHHHHHHHHHcCCEEEEEEeccccc
Confidence 6899999999999999999999986655
No 306
>1oft_A SULA, hypothetical protein PA3008; bacterial cell division inhibitor, FTSZ, SULA protein; 2.9A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=24.81 E-value=2.7e+02 Score=22.26 Aligned_cols=82 Identities=9% Similarity=0.045 Sum_probs=48.5
Q ss_pred CCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHH
Q 013839 142 PESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREIS 221 (435)
Q Consensus 142 ~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~ 221 (435)
.+..|+...|-+..+...+...|.+...+-.-...+-.-.+..+|++++ ......|+.-.. .++..+++++-
T Consensus 74 ~~r~vlwI~Pp~~l~~~~L~~~Gl~~~rll~v~~~~~~daLwa~EqALr---sG~~~aVl~Wl~-----~l~~~~~RRLq 145 (161)
T 1oft_A 74 DARWLTLIAPPASLTHEWLRRAGLNRERILLLQAKDNAAALALSCEALR---LGRSHTVVSWLE-----PLSRAARKQLS 145 (161)
T ss_dssp SSSEEEEESCCTTSCHHHHHHTTCCGGGEEEECCSSTTHHHHHHHHHHH---TTCEEEEEECCS-----SCCHHHHHHHH
T ss_pred cCccEEEECCCCCCCHHHHHHcCCCHHHEEEEECCChHHHHHHHHHHHh---cCCccEEEECCC-----cCChHHHHHHH
Confidence 4455666666677888888999987544322222211223466777777 344334443322 26778888887
Q ss_pred HHHHhcCcee
Q 013839 222 YQFKVKGHFP 231 (435)
Q Consensus 222 ~~~~~~~~~v 231 (435)
--|++.+.+.
T Consensus 146 lAAe~g~~~~ 155 (161)
T 1oft_A 146 RAAQLGQAQS 155 (161)
T ss_dssp HHHHHTTCEE
T ss_pred HHHHhCCCeE
Confidence 7777766543
No 307
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*
Probab=24.75 E-value=2.9e+02 Score=23.66 Aligned_cols=95 Identities=4% Similarity=-0.099 Sum_probs=46.9
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCC-hhh---HHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhc---CCC
Q 013839 122 QALSGTGACRLFAEFQRRFHPESHIYFPDPTW-SNH---HNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKN---APD 194 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y-~~~---~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~---~~~ 194 (435)
++.||++.+-... ...+...|.+|++..-.- ... ...++..|.++..+.. |-. |.+++++.+++ .-.
T Consensus 32 lVTGas~gIG~ai-a~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-D~~----d~~~v~~~~~~~~~~~g 105 (269)
T 4dmm_A 32 LVTGASRGIGRAI-ALELAAAGAKVAVNYASSAGAADEVVAAIAAAGGEAFAVKA-DVS----QESEVEALFAAVIERWG 105 (269)
T ss_dssp EETTCSSHHHHHH-HHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEEC-CTT----SHHHHHHHHHHHHHHHS
T ss_pred EEECCCCHHHHHH-HHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCcEEEEEC-CCC----CHHHHHHHHHHHHHHcC
Confidence 5667766665542 233556888887644321 111 2233445666666655 222 55555555442 112
Q ss_pred CcEEEEeCCCCCCCCC--CCCHHHHHHHHH
Q 013839 195 SSFFLLHPSAHNPTGV--DPTEEQWREISY 222 (435)
Q Consensus 195 ~~~~v~~~~p~NPtG~--~~~~~~l~~i~~ 222 (435)
+..+++.+....+.+. ..+.++++++.+
T Consensus 106 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~ 135 (269)
T 4dmm_A 106 RLDVLVNNAGITRDTLLLRMKRDDWQSVLD 135 (269)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHH
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHH
Confidence 4566664433322221 245666666554
No 308
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*
Probab=24.71 E-value=1.1e+02 Score=27.21 Aligned_cols=71 Identities=6% Similarity=0.032 Sum_probs=40.4
Q ss_pred ChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceee
Q 013839 153 WSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPF 232 (435)
Q Consensus 153 y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi 232 (435)
|..+.++.+....+++.+-+ +. ..-.+.++++++ ...+.+++- ++| ++.++.+++.+.|+++++.++
T Consensus 53 y~sl~el~~~~~~D~viI~t--P~--~~~~~~~~ea~~---~Gi~~iVi~----t~G--~~~~~~~~l~~~A~~~gv~li 119 (288)
T 2nu8_A 53 FNTVREAVAATGATASVIYV--PA--PFCKDSILEAID---AGIKLIITI----TEG--IPTLDMLTVKVKLDEAGVRMI 119 (288)
T ss_dssp ESSHHHHHHHHCCCEEEECC--CG--GGHHHHHHHHHH---TTCSEEEEC----CCC--CCHHHHHHHHHHHHHHTCEEE
T ss_pred cCCHHHHhhcCCCCEEEEec--CH--HHHHHHHHHHHH---CCCCEEEEE----CCC--CCHHHHHHHHHHHHHcCCEEE
Confidence 44444444432445444332 11 234566666666 344443331 224 357788899999999999887
Q ss_pred eecc
Q 013839 233 FDMA 236 (435)
Q Consensus 233 ~Dea 236 (435)
-..+
T Consensus 120 GPNc 123 (288)
T 2nu8_A 120 GPNT 123 (288)
T ss_dssp CSSC
T ss_pred ecCC
Confidence 6664
No 309
>1fob_A Beta-1,4-galactanase; B/A barrel, glycosyl hydrolase, family 53, CLAN GH-A; 1.80A {Aspergillus aculeatus} SCOP: c.1.8.3 PDB: 1fhl_A
Probab=24.60 E-value=91 Score=28.35 Aligned_cols=36 Identities=17% Similarity=0.182 Sum_probs=30.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCc
Q 013839 205 HNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGF 240 (435)
Q Consensus 205 ~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~ 240 (435)
.||.+-..+.++..++++.|+++|+-+++|--|.+.
T Consensus 50 v~P~~g~~d~~~~~~~~~~ak~~Gl~v~ld~hysd~ 85 (334)
T 1fob_A 50 VNPSDGSYDLDYNLELAKRVKAAGMSLYLDLHLSDT 85 (334)
T ss_dssp SCCTTCTTCHHHHHHHHHHHHHTTCEEEEEECCSSS
T ss_pred ECCCCCccCHHHHHHHHHHHHHCCCEEEEEeccCCC
Confidence 578877788999999999999999999999666443
No 310
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=24.59 E-value=3.2e+02 Score=23.13 Aligned_cols=19 Identities=11% Similarity=-0.310 Sum_probs=9.8
Q ss_pred HHHHHHHHHh--cCceeeeec
Q 013839 217 WREISYQFKV--KGHFPFFDM 235 (435)
Q Consensus 217 l~~i~~~~~~--~~~~vi~De 235 (435)
++++.++..+ +++.+.+|.
T Consensus 154 I~~lr~~~~~~~~~~~I~VdG 174 (231)
T 3ctl_A 154 LAELKAWREREGLEYEIEVDG 174 (231)
T ss_dssp HHHHHHHHHHHTCCCEEEEES
T ss_pred HHHHHHHHhccCCCceEEEEC
Confidence 3445555543 256666663
No 311
>1ua7_A Alpha-amylase; beta-alpha-barrels, acarbose, greek-KEY motif, hydrolase; HET: ACI GLD GLC G6D BGC; 2.21A {Bacillus subtilis} SCOP: b.71.1.1 c.1.8.1 PDB: 1bag_A* 3dc0_A
Probab=24.50 E-value=52 Score=31.06 Aligned_cols=32 Identities=16% Similarity=0.124 Sum_probs=28.0
Q ss_pred CCHHHHHHHHHHHHhcCceeeeeccCCCccCC
Q 013839 212 PTEEQWREISYQFKVKGHFPFFDMAYQGFASG 243 (435)
Q Consensus 212 ~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~ 243 (435)
.+.++++++++.|+++|+-||.|-++.....+
T Consensus 72 G~~~d~~~lv~~~h~~Gi~VilD~V~NH~~~~ 103 (422)
T 1ua7_A 72 GTEQEFKEMCAAAEEYGIKVIVDAVINHTTFD 103 (422)
T ss_dssp EEHHHHHHHHHHHHTTTCEEEEEECCSBCCSC
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEeccCcccCC
Confidence 36899999999999999999999998766543
No 312
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}
Probab=24.50 E-value=1.5e+02 Score=26.99 Aligned_cols=73 Identities=10% Similarity=0.088 Sum_probs=45.5
Q ss_pred CCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCce
Q 013839 151 PTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHF 230 (435)
Q Consensus 151 p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~ 230 (435)
+.|..+..++..-..+++.+-+ ++ ....+...+++. ....+++ .-|.+ .+.++.+++.+.|++++..
T Consensus 52 ~~~~~~~~ll~~~~~D~V~i~t--p~--~~h~~~~~~al~---aGkhVl~----EKP~a--~~~~ea~~l~~~a~~~g~~ 118 (359)
T 3e18_A 52 KIYESYEAVLADEKVDAVLIAT--PN--DSHKELAISALE---AGKHVVC----EKPVT--MTSEDLLAIMDVAKRVNKH 118 (359)
T ss_dssp CBCSCHHHHHHCTTCCEEEECS--CG--GGHHHHHHHHHH---TTCEEEE----ESSCC--SSHHHHHHHHHHHHHHTCC
T ss_pred ceeCCHHHHhcCCCCCEEEEcC--Cc--HHHHHHHHHHHH---CCCCEEe----eCCCc--CCHHHHHHHHHHHHHhCCe
Confidence 3455666666655566666644 22 234455556665 3334443 45554 4688999999999999988
Q ss_pred eeeecc
Q 013839 231 PFFDMA 236 (435)
Q Consensus 231 vi~Dea 236 (435)
+.+-..
T Consensus 119 ~~v~~~ 124 (359)
T 3e18_A 119 FMVHQN 124 (359)
T ss_dssp EEEECG
T ss_pred EEEEee
Confidence 877554
No 313
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=24.35 E-value=1.3e+02 Score=18.82 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 013839 330 LWIDEVKIMADRIQRKRTTLRQNLE 354 (435)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~l~~~l~ 354 (435)
.....+++.+.+|..+++-+.+++.
T Consensus 25 ~Me~Ei~elr~RY~~KRqPIldAi~ 49 (51)
T 2jo8_A 25 MMEQEIEEIRQKYQSKRQPILDAIE 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhHhhHHHHHh
Confidence 3557789999999999998888764
No 314
>2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase like, antiparallel beta-sheet, greek terminal domain, extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A
Probab=24.31 E-value=60 Score=30.68 Aligned_cols=29 Identities=14% Similarity=0.088 Sum_probs=26.3
Q ss_pred CHHHHHHHHHHHHhcCceeeeeccCCCcc
Q 013839 213 TEEQWREISYQFKVKGHFPFFDMAYQGFA 241 (435)
Q Consensus 213 ~~~~l~~i~~~~~~~~~~vi~Deay~~~~ 241 (435)
+.++++++++-|+++|+-||.|-++...+
T Consensus 80 t~~d~~~lv~~ah~~Gi~vilD~V~NH~s 108 (424)
T 2dh2_A 80 SKEDFDSLLQSAKKKSIRVILDLTPNYRG 108 (424)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEECCTTTTS
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECCCcCC
Confidence 58999999999999999999999986655
No 315
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=24.23 E-value=3.2e+02 Score=23.03 Aligned_cols=28 Identities=11% Similarity=-0.104 Sum_probs=16.3
Q ss_pred CCCCCCHHHHHHHHHHHHhc-Cceeeeec
Q 013839 208 TGVDPTEEQWREISYQFKVK-GHFPFFDM 235 (435)
Q Consensus 208 tG~~~~~~~l~~i~~~~~~~-~~~vi~De 235 (435)
.|..+.++.+++|.++.+.. ++.+.+|-
T Consensus 148 ~Gq~f~~~~l~ki~~lr~~~~~~~I~VdG 176 (228)
T 3ovp_A 148 GGQKFMEDMMPKVHWLRTQFPSLDIEVDG 176 (228)
T ss_dssp CSCCCCGGGHHHHHHHHHHCTTCEEEEES
T ss_pred CCcccCHHHHHHHHHHHHhcCCCCEEEeC
Confidence 56666666666666655443 45565653
No 316
>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, 3,4-dihydroxy-2-B 4-phosphate synthase, synthetic gene, ISO; 1.60A {Candida albicans} SCOP: d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A*
Probab=24.22 E-value=72 Score=26.69 Aligned_cols=36 Identities=8% Similarity=-0.111 Sum_probs=25.6
Q ss_pred CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeee
Q 013839 195 SSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFF 233 (435)
Q Consensus 195 ~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~ 233 (435)
.+.+++..-..|+.|...... ++.++|++|++.+|.
T Consensus 159 ~Pa~vicEi~~~~dG~mar~~---~l~~fA~~h~l~iit 194 (204)
T 1tks_A 159 QPAGVICELVRDEDGLMMRLD---DCIQFGKKHGIKIIN 194 (204)
T ss_dssp CSBEEEEEBBCTTTCCBCBHH---HHHHHHHHHTCCEEE
T ss_pred CceEEEEEEeECCCCCcCCHH---HHHHHHHHcCCcEEE
Confidence 345554444458889887655 778899999988765
No 317
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}
Probab=24.12 E-value=1.7e+02 Score=26.73 Aligned_cols=71 Identities=7% Similarity=0.141 Sum_probs=41.1
Q ss_pred ChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceee
Q 013839 153 WSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPF 232 (435)
Q Consensus 153 y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi 232 (435)
|..+.+++..-..+.+.|.+ ++ ..-.+...++++ ...-+++ .=|.+ .+.++.++|++.|++++..+.
T Consensus 83 y~d~~ell~~~~iDaV~Iat--P~--~~H~~~a~~al~---aGkhVl~----EKPla--~~~~ea~~l~~~a~~~g~~l~ 149 (393)
T 4fb5_A 83 TADWRALIADPEVDVVSVTT--PN--QFHAEMAIAALE---AGKHVWC----EKPMA--PAYADAERMLATAERSGKVAA 149 (393)
T ss_dssp ESCHHHHHHCTTCCEEEECS--CG--GGHHHHHHHHHH---TTCEEEE----CSCSC--SSHHHHHHHHHHHHHSSSCEE
T ss_pred cCCHHHHhcCCCCcEEEECC--Ch--HHHHHHHHHHHh---cCCeEEE----ccCCc--ccHHHHHHhhhhHHhcCCccc
Confidence 44555555555555555544 21 133445555555 2333333 34444 467788888888888888877
Q ss_pred eecc
Q 013839 233 FDMA 236 (435)
Q Consensus 233 ~Dea 236 (435)
+-..
T Consensus 150 vg~~ 153 (393)
T 4fb5_A 150 LGYN 153 (393)
T ss_dssp ECCG
T ss_pred cccc
Confidence 7654
No 318
>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*
Probab=24.11 E-value=3.1e+02 Score=23.65 Aligned_cols=100 Identities=9% Similarity=-0.048 Sum_probs=51.7
Q ss_pred CCeeeEecCCchhHHHHHHHHHHHhCCCCEEEEcCCCC--hhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhc--
Q 013839 116 GRSAGVQALSGTGACRLFAEFQRRFHPESHIYFPDPTW--SNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKN-- 191 (435)
Q Consensus 116 ~~v~~~~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y--~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~-- 191 (435)
++++ ++.||+.++=... ...+...|-.|++.+-.- ......+...|.+...+.. |-. |.+++++.+++
T Consensus 7 gKva--lVTGas~GIG~ai-a~~la~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~-Dv~----~~~~v~~~v~~~~ 78 (258)
T 4gkb_A 7 DKVV--IVTGGASGIGGAI-SMRLAEERAIPVVFARHAPDGAFLDALAQRQPRATYLPV-ELQ----DDAQCRDAVAQTI 78 (258)
T ss_dssp TCEE--EEETTTSHHHHHH-HHHHHHTTCEEEEEESSCCCHHHHHHHHHHCTTCEEEEC-CTT----CHHHHHHHHHHHH
T ss_pred CCEE--EEeCCCCHHHHHH-HHHHHHcCCEEEEEECCcccHHHHHHHHhcCCCEEEEEe-ecC----CHHHHHHHHHHHH
Confidence 4555 5666766665542 233556887776654221 2223334455667777665 222 44444444332
Q ss_pred -CCCCcEEEEeCCCC-CCCCCCCCHHHHHHHHHH
Q 013839 192 -APDSSFFLLHPSAH-NPTGVDPTEEQWREISYQ 223 (435)
Q Consensus 192 -~~~~~~~v~~~~p~-NPtG~~~~~~~l~~i~~~ 223 (435)
.-.+..+++.+..- .+.....+.++|+++.+.
T Consensus 79 ~~~G~iDiLVNnAGi~~~~~~~~~~e~~~~~~~v 112 (258)
T 4gkb_A 79 ATFGRLDGLVNNAGVNDGIGLDAGRDAFVASLER 112 (258)
T ss_dssp HHHSCCCEEEECCCCCCCCCTTSCHHHHHHHHHH
T ss_pred HHhCCCCEEEECCCCCCCCCccCCHHHHHHHHHH
Confidence 11345666654322 233445677777776654
No 319
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}
Probab=24.06 E-value=1.9e+02 Score=25.84 Aligned_cols=73 Identities=12% Similarity=0.077 Sum_probs=45.1
Q ss_pred CChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCcee
Q 013839 152 TWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFP 231 (435)
Q Consensus 152 ~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~v 231 (435)
.|..+..++.....+++.+-+ ++ ....+...+++. ....+++ ..|.+ .+.++.+++.+.|+++++.+
T Consensus 55 ~~~~~~~ll~~~~~D~V~i~t--p~--~~h~~~~~~al~---~gk~vl~----EKP~~--~~~~e~~~l~~~a~~~g~~~ 121 (330)
T 3e9m_A 55 AYGSYEELCKDETIDIIYIPT--YN--QGHYSAAKLALS---QGKPVLL----EKPFT--LNAAEAEELFAIAQEQGVFL 121 (330)
T ss_dssp CBSSHHHHHHCTTCSEEEECC--CG--GGHHHHHHHHHH---TTCCEEE----CSSCC--SSHHHHHHHHHHHHHTTCCE
T ss_pred eeCCHHHHhcCCCCCEEEEcC--CC--HHHHHHHHHHHH---CCCeEEE----eCCCC--CCHHHHHHHHHHHHHcCCeE
Confidence 455566666544556666544 21 123455555665 3333443 45654 46889999999999999888
Q ss_pred eeeccC
Q 013839 232 FFDMAY 237 (435)
Q Consensus 232 i~Deay 237 (435)
.+...+
T Consensus 122 ~v~~~~ 127 (330)
T 3e9m_A 122 MEAQKS 127 (330)
T ss_dssp EECCSG
T ss_pred EEEEhh
Confidence 776553
No 320
>2aaa_A Alpha-amylase; glycosidase; 2.10A {Aspergillus niger} SCOP: b.71.1.1 c.1.8.1
Probab=24.04 E-value=62 Score=31.13 Aligned_cols=31 Identities=13% Similarity=0.289 Sum_probs=27.0
Q ss_pred CCHHHHHHHHHHHHhcCceeeeeccCCCccC
Q 013839 212 PTEEQWREISYQFKVKGHFPFFDMAYQGFAS 242 (435)
Q Consensus 212 ~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~ 242 (435)
.+.++++++++-|+++|+-||.|-++.....
T Consensus 95 Gt~~df~~lv~~~H~~Gi~VilD~V~NH~~~ 125 (484)
T 2aaa_A 95 GTADNLKSLSDALHARGMYLMVDVVPDHMGY 125 (484)
T ss_dssp CCHHHHHHHHHHHHTTTCEEEEEECCSBCCB
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEECcCCcCC
Confidence 3589999999999999999999999866554
No 321
>1ud2_A Amylase, alpha-amylase; calcium-free, alkaline, hydrolase; 2.13A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1ud4_A 1ud5_A 1ud6_A 1ud8_A 1ud3_A
Probab=23.96 E-value=51 Score=31.72 Aligned_cols=30 Identities=13% Similarity=-0.021 Sum_probs=26.7
Q ss_pred CCHHHHHHHHHHHHhcCceeeeeccCCCcc
Q 013839 212 PTEEQWREISYQFKVKGHFPFFDMAYQGFA 241 (435)
Q Consensus 212 ~~~~~l~~i~~~~~~~~~~vi~Deay~~~~ 241 (435)
.+.++++++++-|+++|+-||.|-++....
T Consensus 78 Gt~~df~~lv~~aH~~Gi~VilD~V~NH~~ 107 (480)
T 1ud2_A 78 GTKAQLERAIGSLKSNDINVYGDVVMNHKM 107 (480)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEECCSEEC
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEEccCccc
Confidence 468999999999999999999999986654
No 322
>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}
Probab=23.85 E-value=3.1e+02 Score=24.26 Aligned_cols=96 Identities=10% Similarity=-0.047 Sum_probs=46.4
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEEEcCCC----------Chhh---HHHHhhCCCCeeeeeecCCCCCCcChHhHHHH
Q 013839 122 QALSGTGACRLFAEFQRRFHPESHIYFPDPT----------WSNH---HNIWRDAQIPERTYHYYDPDSKSLDFAALMDD 188 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~----------y~~~---~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~ 188 (435)
++.||++.+-... ...+...|.+|++.+-. -... ...+...|.++..+.. |- -|.+++++.
T Consensus 31 lVTGas~GIG~ai-a~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-Dv----~d~~~v~~~ 104 (322)
T 3qlj_A 31 IVTGAGGGIGRAH-ALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGS-NV----ADWDQAAGL 104 (322)
T ss_dssp EETTTTSHHHHHH-HHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECC-CT----TSHHHHHHH
T ss_pred EEECCCcHHHHHH-HHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEEC-CC----CCHHHHHHH
Confidence 5667776665542 23355688888775422 1112 2223345655655554 22 255555555
Q ss_pred hhcC---CCCcEEEEeCCCCCCCCC--CCCHHHHHHHHHH
Q 013839 189 IKNA---PDSSFFLLHPSAHNPTGV--DPTEEQWREISYQ 223 (435)
Q Consensus 189 i~~~---~~~~~~v~~~~p~NPtG~--~~~~~~l~~i~~~ 223 (435)
+++. -.+..+++.+......+. ..+.++++++.+.
T Consensus 105 ~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~v 144 (322)
T 3qlj_A 105 IQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAV 144 (322)
T ss_dssp HHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 4321 124456664332222221 2456666665553
No 323
>3c01_E Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, M inner membrane, transmembrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1
Probab=23.73 E-value=38 Score=24.70 Aligned_cols=21 Identities=10% Similarity=-0.043 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhcCceeeeecc
Q 013839 216 QWREISYQFKVKGHFPFFDMA 236 (435)
Q Consensus 216 ~l~~i~~~~~~~~~~vi~Dea 236 (435)
--++|.++|+++|++|+.|..
T Consensus 28 ~A~~I~e~A~e~gVPi~e~~~ 48 (98)
T 3c01_E 28 RALAVRAYAEKVGVPVIVDIK 48 (98)
T ss_dssp HHHHHHHHHHHHTCCEEECHH
T ss_pred HHHHHHHHHHHcCCCeecCHH
Confidence 456899999999999999864
No 324
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}
Probab=23.61 E-value=1.7e+02 Score=26.91 Aligned_cols=21 Identities=5% Similarity=0.033 Sum_probs=10.6
Q ss_pred CHHHHHHHHHHHHhcCceeee
Q 013839 213 TEEQWREISYQFKVKGHFPFF 233 (435)
Q Consensus 213 ~~~~l~~i~~~~~~~~~~vi~ 233 (435)
+.++.++|.+.|+++++.+.+
T Consensus 100 ~~~e~~~l~~~a~~~g~~~~v 120 (387)
T 3moi_A 100 SRDEADRMIEAVERAGVHLVV 120 (387)
T ss_dssp CHHHHHHHHHHHHHHTCCEEE
T ss_pred CHHHHHHHHHHHHHhCCeEEE
Confidence 345555555555555544443
No 325
>1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, thermostability; 2.00A {Geobacillus stearothermophilus} SCOP: b.71.1.1 c.1.8.1
Probab=23.41 E-value=52 Score=32.08 Aligned_cols=30 Identities=13% Similarity=0.155 Sum_probs=26.9
Q ss_pred CCHHHHHHHHHHHHhcCceeeeeccCCCcc
Q 013839 212 PTEEQWREISYQFKVKGHFPFFDMAYQGFA 241 (435)
Q Consensus 212 ~~~~~l~~i~~~~~~~~~~vi~Deay~~~~ 241 (435)
.+.++++++++.|+++|+-||.|-++....
T Consensus 79 Gt~~dfk~Lv~~aH~~Gi~VilD~V~NH~~ 108 (515)
T 1hvx_A 79 GTKAQYLQAIQAAHAAGMQVYADVVFDHKG 108 (515)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEECCSEEC
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEEecCCcc
Confidence 468999999999999999999999986654
No 326
>3bh4_A Alpha-amylase; calcium, carbohydrate metabolism, glycosidase, hydrolase, metal-binding, secreted; 1.40A {Bacillus amyloliquefaciens} PDB: 1e43_A 1e3z_A* 1e40_A* 1e3x_A 1vjs_A 1ob0_A 1bli_A 1bpl_B 1bpl_A
Probab=23.38 E-value=53 Score=31.62 Aligned_cols=30 Identities=10% Similarity=0.048 Sum_probs=26.7
Q ss_pred CCHHHHHHHHHHHHhcCceeeeeccCCCcc
Q 013839 212 PTEEQWREISYQFKVKGHFPFFDMAYQGFA 241 (435)
Q Consensus 212 ~~~~~l~~i~~~~~~~~~~vi~Deay~~~~ 241 (435)
.+.++++++++-|+++|+-||.|-++....
T Consensus 76 Gt~~df~~lv~~aH~~Gi~VilD~V~NH~~ 105 (483)
T 3bh4_A 76 GTKSELQDAIGSLHSRNVQVYGDVVLNHKA 105 (483)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEECCSEEC
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEEccCccc
Confidence 468999999999999999999999986654
No 327
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}
Probab=23.08 E-value=2e+02 Score=25.65 Aligned_cols=71 Identities=11% Similarity=0.046 Sum_probs=43.4
Q ss_pred ChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceee
Q 013839 153 WSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPF 232 (435)
Q Consensus 153 y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi 232 (435)
|..+..++..-..+++.+.+ ++ ....+...+++. ....+++ ..|.+ .+.++.+++.+.|+++++.+.
T Consensus 56 ~~~~~~ll~~~~~D~V~i~t--p~--~~h~~~~~~al~---aGk~Vl~----EKP~a--~~~~e~~~l~~~a~~~~~~~~ 122 (329)
T 3evn_A 56 YDKLEDMLADESIDVIYVAT--IN--QDHYKVAKAALL---AGKHVLV----EKPFT--LTYDQANELFALAESCNLFLM 122 (329)
T ss_dssp ESCHHHHHTCTTCCEEEECS--CG--GGHHHHHHHHHH---TTCEEEE----ESSCC--SSHHHHHHHHHHHHHTTCCEE
T ss_pred cCCHHHHhcCCCCCEEEECC--Cc--HHHHHHHHHHHH---CCCeEEE----ccCCc--CCHHHHHHHHHHHHHcCCEEE
Confidence 44555555544556666544 21 223455556665 3334443 45654 468899999999999998887
Q ss_pred eecc
Q 013839 233 FDMA 236 (435)
Q Consensus 233 ~Dea 236 (435)
+-..
T Consensus 123 v~~~ 126 (329)
T 3evn_A 123 EAQK 126 (329)
T ss_dssp EECS
T ss_pred EEEc
Confidence 6544
No 328
>2qlc_A DNA repair protein RADC homolog; MCSG, structural genomics, PSI-2, structure initiative; HET: DNA; 2.30A {Chlorobium tepidum tls}
Probab=22.97 E-value=76 Score=24.28 Aligned_cols=58 Identities=10% Similarity=0.130 Sum_probs=28.2
Q ss_pred cCh-HhHHHHhhcCCCCcEEEEeCCCCCCCCCCC-CHHHHH---HHHHHHHh-----cCceeeeeccCCCcc
Q 013839 180 LDF-AALMDDIKNAPDSSFFLLHPSAHNPTGVDP-TEEQWR---EISYQFKV-----KGHFPFFDMAYQGFA 241 (435)
Q Consensus 180 ~d~-e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~-~~~~l~---~i~~~~~~-----~~~~vi~Deay~~~~ 241 (435)
.++ +-++.++. .....+++. .|.|+|..- |.+|++ +|.+.++- .|-+||-|+-|..|.
T Consensus 54 v~pRei~~~Al~---~~A~~vIl~-HNHPSG~~~PS~~D~~~T~~l~~a~~ll~I~llDHiIig~~~~~Sf~ 121 (126)
T 2qlc_A 54 IHPREIFKAAIR---ESAHSIILV-HNHPSGDVQPSNADKQVTSILKKAGDLLQIELLDHVIVGNNDWFSFR 121 (126)
T ss_dssp CCHHHHHHHHHH---TTCSEEEEE-EECSSSCCSCCHHHHHHHHHHHHHHHHHTCEEEEEEEECSSCEEETT
T ss_pred ecHHHHHHHHHH---cCCcEEEEE-ecCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEeeeEEEeCCcEEEec
Confidence 344 34455565 333344332 255777654 555553 33333333 345666666654443
No 329
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Probab=22.85 E-value=3.4e+02 Score=22.82 Aligned_cols=76 Identities=9% Similarity=-0.112 Sum_probs=38.1
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcC---CCCcEE
Q 013839 122 QALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNA---PDSSFF 198 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~---~~~~~~ 198 (435)
++.|+++.+-... ...+...|.+|++.+-.-.......+..+.++..+.. |-. |.+++++.+++. -.+..+
T Consensus 16 lVTGasggiG~~~-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-D~~----~~~~v~~~~~~~~~~~g~id~ 89 (265)
T 2o23_A 16 VITGGASGLGLAT-AERLVGQGASAVLLDLPNSGGEAQAKKLGNNCVFAPA-DVT----SEKDVQTALALAKGKFGRVDV 89 (265)
T ss_dssp EEETTTSHHHHHH-HHHHHHTTCEEEEEECTTSSHHHHHHHHCTTEEEEEC-CTT----CHHHHHHHHHHHHHHHSCCCE
T ss_pred EEECCCChHHHHH-HHHHHHCCCEEEEEeCCcHhHHHHHHHhCCceEEEEc-CCC----CHHHHHHHHHHHHHHCCCCCE
Confidence 4667776665442 2334567877776543323333444444556655554 222 455555554421 124556
Q ss_pred EEeCC
Q 013839 199 LLHPS 203 (435)
Q Consensus 199 v~~~~ 203 (435)
++.+.
T Consensus 90 li~~A 94 (265)
T 2o23_A 90 AVNCA 94 (265)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 66443
No 330
>1hjs_A Beta-1,4-galactanase; 4-galactanases, family 53 glycoside hydrolase, thermostability, PH optimum, CLAN GH-A, thermophIle, alkalophIle; HET: NAG EPE; 1.87A {Thielavia heterothallica} SCOP: c.1.8.3 PDB: 1hju_A* 1hjq_A*
Probab=22.85 E-value=1e+02 Score=28.06 Aligned_cols=36 Identities=19% Similarity=0.177 Sum_probs=30.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCceeeeeccCCCc
Q 013839 205 HNPTGVDPTEEQWREISYQFKVKGHFPFFDMAYQGF 240 (435)
Q Consensus 205 ~NPtG~~~~~~~l~~i~~~~~~~~~~vi~Deay~~~ 240 (435)
.||.|-..+.+++.++++.|+++|+-|++|--|.+.
T Consensus 50 ~~P~~g~~~~~~~~~~~~~A~~~GlkV~ld~Hysd~ 85 (332)
T 1hjs_A 50 VNPADGNYNLDYNIAIAKRAKAAGLGVYIDFHYSDT 85 (332)
T ss_dssp SSCTTCTTSHHHHHHHHHHHHHTTCEEEEEECCSSS
T ss_pred eCCCCCcCCHHHHHHHHHHHHHCCCEEEEEeccCCC
Confidence 678887788899999999999999999999666444
No 331
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}
Probab=22.85 E-value=2.4e+02 Score=23.85 Aligned_cols=95 Identities=7% Similarity=-0.081 Sum_probs=47.8
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhc---CCCCcEE
Q 013839 122 QALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKN---APDSSFF 198 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~---~~~~~~~ 198 (435)
++.|+++.+-... ...+...|.+|++.+-.-..........+.++..+.. |-. |.+++++.+++ ...+..+
T Consensus 13 lITGas~gIG~~~-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-D~~----~~~~~~~~~~~~~~~~g~id~ 86 (261)
T 3n74_A 13 LITGAGSGFGEGM-AKRFAKGGAKVVIVDRDKAGAERVAGEIGDAALAVAA-DIS----KEADVDAAVEAALSKFGKVDI 86 (261)
T ss_dssp EEETTTSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEEC-CTT----SHHHHHHHHHHHHHHHSCCCE
T ss_pred EEECCCchHHHHH-HHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceEEEEe-cCC----CHHHHHHHHHHHHHhcCCCCE
Confidence 4566666654442 2334567888877664434444444555666666655 222 45555554432 1124456
Q ss_pred EEeCCCCCC-CCC--CCCHHHHHHHHH
Q 013839 199 LLHPSAHNP-TGV--DPTEEQWREISY 222 (435)
Q Consensus 199 v~~~~p~NP-tG~--~~~~~~l~~i~~ 222 (435)
++.+..... .+. ..+.+++++..+
T Consensus 87 li~~Ag~~~~~~~~~~~~~~~~~~~~~ 113 (261)
T 3n74_A 87 LVNNAGIGHKPQNAELVEPEEFDRIVG 113 (261)
T ss_dssp EEECCCCCCCSCCGGGSCHHHHHHHHH
T ss_pred EEECCccCCCCCCcccCCHHHHHHHHH
Confidence 664432211 111 135666665544
No 332
>1wpc_A Glucan 1,4-alpha-maltohexaosidase; maltohexaose-producing amylase, alpha-amylase, acarbose, HYD; HET: ACI GLC GAL; 1.90A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1wp6_A* 2d3l_A* 2d3n_A* 2die_A 2gjp_A* 2gjr_A 1w9x_A*
Probab=22.81 E-value=55 Score=31.51 Aligned_cols=30 Identities=17% Similarity=0.090 Sum_probs=26.6
Q ss_pred CCHHHHHHHHHHHHhcCceeeeeccCCCcc
Q 013839 212 PTEEQWREISYQFKVKGHFPFFDMAYQGFA 241 (435)
Q Consensus 212 ~~~~~l~~i~~~~~~~~~~vi~Deay~~~~ 241 (435)
.+.++++++++-|+++|+-||.|-++....
T Consensus 80 Gt~~df~~Lv~~aH~~Gi~VilD~V~NH~~ 109 (485)
T 1wpc_A 80 GTRSQLQAAVTSLKNNGIQVYGDVVMNHKG 109 (485)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEECCSEEC
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEEeccccC
Confidence 468999999999999999999999976554
No 333
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=22.76 E-value=48 Score=30.38 Aligned_cols=50 Identities=10% Similarity=-0.138 Sum_probs=33.3
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeee
Q 013839 122 QALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHY 172 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~ 172 (435)
-.++|+.+..++... +.+.=--+|++|.-.-..-...++.+|++++.++.
T Consensus 92 ~aSsGN~g~alA~~a-a~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~ 141 (344)
T 3vc3_A 92 EPTSGNMGISMAFMA-AMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDP 141 (344)
T ss_dssp EECSSHHHHHHHHHH-HHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred EeCCcHHHHHHHHHH-HHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECC
Confidence 577888888777422 23332256667665545556788899999988754
No 334
>3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics, center for structural genomics of infectious diseases, unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella enterica subsp}
Probab=22.72 E-value=77 Score=31.72 Aligned_cols=33 Identities=12% Similarity=0.128 Sum_probs=28.8
Q ss_pred CCCHHHHHHHHHHHHhcCceeeeeccCCCccCC
Q 013839 211 DPTEEQWREISYQFKVKGHFPFFDMAYQGFASG 243 (435)
Q Consensus 211 ~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~~ 243 (435)
..+.++++++++-|+++|+-||.|-++..+..+
T Consensus 199 ~G~~~~~~~lv~~~H~~Gi~VilD~V~NH~~~~ 231 (618)
T 3m07_A 199 YGTPDDFKAFIDAAHGYGLSVVLDIVLNHFGPE 231 (618)
T ss_dssp TCCHHHHHHHHHHHHHTTCEEEEEECCSCCCSS
T ss_pred cCCHHHHHHHHHHHHHCCCEEEEeecCccCCCC
Confidence 346899999999999999999999998877644
No 335
>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}
Probab=22.59 E-value=2.4e+02 Score=26.35 Aligned_cols=73 Identities=12% Similarity=0.165 Sum_probs=45.7
Q ss_pred CChhhHHHHhh-----CCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHh
Q 013839 152 TWSNHHNIWRD-----AQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKV 226 (435)
Q Consensus 152 ~y~~~~~~~~~-----~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~ 226 (435)
.|..+..++.. -..+++.+.+ ++ ....+...++++ ....+++ ..|.+ .+.++.++|.+.|++
T Consensus 93 ~~~~~~~ll~~~~~~~~~vD~V~I~t--p~--~~H~~~~~~al~---aGkhVl~----EKPla--~~~~ea~~l~~~a~~ 159 (417)
T 3v5n_A 93 VYSDFKEMAIREAKLKNGIEAVAIVT--PN--HVHYAAAKEFLK---RGIHVIC----DKPLT--STLADAKKLKKAADE 159 (417)
T ss_dssp BCSCHHHHHHHHHHCTTCCSEEEECS--CT--TSHHHHHHHHHT---TTCEEEE----ESSSC--SSHHHHHHHHHHHHH
T ss_pred ccCCHHHHHhcccccCCCCcEEEECC--Cc--HHHHHHHHHHHh---CCCeEEE----ECCCc--CCHHHHHHHHHHHHH
Confidence 45566666665 4566666654 22 134455555565 3333333 45554 478899999999999
Q ss_pred cCceeeeeccC
Q 013839 227 KGHFPFFDMAY 237 (435)
Q Consensus 227 ~~~~vi~Deay 237 (435)
+++.+.+...|
T Consensus 160 ~g~~~~v~~~~ 170 (417)
T 3v5n_A 160 SDALFVLTHNY 170 (417)
T ss_dssp CSSCEEEECGG
T ss_pred cCCEEEEEecc
Confidence 99988877654
No 336
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*
Probab=22.58 E-value=2.8e+02 Score=23.94 Aligned_cols=28 Identities=11% Similarity=-0.120 Sum_probs=16.7
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEEEcC
Q 013839 122 QALSGTGACRLFAEFQRRFHPESHIYFPD 150 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~ 150 (435)
++.|+++.+-... ...+...|.+|++.+
T Consensus 15 lVTGas~gIG~ai-a~~la~~G~~V~~~~ 42 (286)
T 3uve_A 15 FVTGAARGQGRSH-AVRLAQEGADIIAVD 42 (286)
T ss_dssp EEESTTSHHHHHH-HHHHHHTTCEEEEEE
T ss_pred EEeCCCchHHHHH-HHHHHHCCCeEEEEe
Confidence 5666666665542 233556888887653
No 337
>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}
Probab=22.53 E-value=2.8e+02 Score=25.26 Aligned_cols=72 Identities=11% Similarity=-0.094 Sum_probs=46.0
Q ss_pred CChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCcee
Q 013839 152 TWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFP 231 (435)
Q Consensus 152 ~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~v 231 (435)
.|..+..++..-..+++.+.+ ++ ..-.+...++++ ....++ + .-|.+ .+.++.++|.+.|++++..+
T Consensus 71 ~~~~~~~ll~~~~iD~V~i~t--p~--~~h~~~~~~al~---~Gk~V~-~---EKP~a--~~~~~~~~l~~~a~~~~~~~ 137 (383)
T 3oqb_A 71 WTTDLDAALADKNDTMFFDAA--TT--QARPGLLTQAIN---AGKHVY-C---EKPIA--TNFEEALEVVKLANSKGVKH 137 (383)
T ss_dssp EESCHHHHHHCSSCCEEEECS--CS--SSSHHHHHHHHT---TTCEEE-E---CSCSC--SSHHHHHHHHHHHHHTTCCE
T ss_pred ccCCHHHHhcCCCCCEEEECC--Cc--hHHHHHHHHHHH---CCCeEE-E---cCCCC--CCHHHHHHHHHHHHHcCCeE
Confidence 455666777665666666644 22 234566666665 333444 3 45555 46788999999999999877
Q ss_pred eeecc
Q 013839 232 FFDMA 236 (435)
Q Consensus 232 i~Dea 236 (435)
.+-..
T Consensus 138 ~v~~~ 142 (383)
T 3oqb_A 138 GTVQD 142 (383)
T ss_dssp EECCG
T ss_pred EEEec
Confidence 76554
No 338
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}
Probab=22.53 E-value=3.9e+02 Score=23.29 Aligned_cols=95 Identities=12% Similarity=0.012 Sum_probs=47.4
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEEEcCCC------------Chhh---HHHHhhCCCCeeeeeecCCCCCCcChHhHH
Q 013839 122 QALSGTGACRLFAEFQRRFHPESHIYFPDPT------------WSNH---HNIWRDAQIPERTYHYYDPDSKSLDFAALM 186 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~------------y~~~---~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~ 186 (435)
++.||++++-... ...+...|.+|++.+-. -... ...++..|.++..+.. |-. |.++++
T Consensus 32 lVTGas~GIG~ai-a~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-Dv~----~~~~v~ 105 (299)
T 3t7c_A 32 FITGAARGQGRSH-AITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQV-DVR----DFDAMQ 105 (299)
T ss_dssp EEESTTSHHHHHH-HHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEEC-CTT----CHHHHH
T ss_pred EEECCCCHHHHHH-HHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEEC-CCC----CHHHHH
Confidence 5667766665542 23355688888765321 1111 1223445667766665 222 555555
Q ss_pred HHhhc---CCCCcEEEEeCCCCCCCCC---CCCHHHHHHHHH
Q 013839 187 DDIKN---APDSSFFLLHPSAHNPTGV---DPTEEQWREISY 222 (435)
Q Consensus 187 ~~i~~---~~~~~~~v~~~~p~NPtG~---~~~~~~l~~i~~ 222 (435)
+.+++ .-.+..+++.+....+.+. ..+.+++++..+
T Consensus 106 ~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~ 147 (299)
T 3t7c_A 106 AAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMID 147 (299)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHH
Confidence 55442 1124556665443222222 346677776655
No 339
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}
Probab=22.49 E-value=3.5e+02 Score=22.85 Aligned_cols=95 Identities=8% Similarity=-0.095 Sum_probs=48.5
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHH---HHhhCCCCeeeeeecCCCCCCcChHhHHHHhhc---CCCC
Q 013839 122 QALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHN---IWRDAQIPERTYHYYDPDSKSLDFAALMDDIKN---APDS 195 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~---~~~~ 195 (435)
++.||++.+-... ...+...|.+|++.+-.-..... .++..|.++..+.. |-. |.+.+++.+++ ...+
T Consensus 16 lVTGas~gIG~~i-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-Dv~----d~~~v~~~~~~~~~~~g~ 89 (256)
T 3gaf_A 16 IVTGAAAGIGRAI-AGTFAKAGASVVVTDLKSEGAEAVAAAIRQAGGKAIGLEC-NVT----DEQHREAVIKAALDQFGK 89 (256)
T ss_dssp EECSCSSHHHHHH-HHHHHHHTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEEC-CTT----CHHHHHHHHHHHHHHHSC
T ss_pred EEECCCCHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEC-CCC----CHHHHHHHHHHHHHHcCC
Confidence 5667776665542 23345578888776543322222 23345667766655 222 55555554432 1124
Q ss_pred cEEEEeCCCCCC-CCCCCCHHHHHHHHH
Q 013839 196 SFFLLHPSAHNP-TGVDPTEEQWREISY 222 (435)
Q Consensus 196 ~~~v~~~~p~NP-tG~~~~~~~l~~i~~ 222 (435)
..+++.+....+ .....+.+++++..+
T Consensus 90 id~lv~nAg~~~~~~~~~~~~~~~~~~~ 117 (256)
T 3gaf_A 90 ITVLVNNAGGGGPKPFDMPMSDFEWAFK 117 (256)
T ss_dssp CCEEEECCCCCCCCCTTCCHHHHHHHHH
T ss_pred CCEEEECCCCCCCCCCCCCHHHHHHHHH
Confidence 566665433222 222456777776554
No 340
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*
Probab=22.39 E-value=3.7e+02 Score=23.05 Aligned_cols=95 Identities=8% Similarity=-0.050 Sum_probs=47.5
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHH----hhCCCCeeeeeecCCCCCCcChHhHHHHhhc---CCC
Q 013839 122 QALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIW----RDAQIPERTYHYYDPDSKSLDFAALMDDIKN---APD 194 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~---~~~ 194 (435)
++.||++++-... ...+...|.+|++.+-.-....... ...|.++..+.. |-. |.+++++.+++ .-.
T Consensus 31 lVTGas~GIG~ai-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-Dv~----~~~~v~~~~~~~~~~~g 104 (277)
T 4fc7_A 31 FITGGGSGIGFRI-AEIFMRHGCHTVIASRSLPRVLTAARKLAGATGRRCLPLSM-DVR----APPAVMAAVDQALKEFG 104 (277)
T ss_dssp EEETTTSHHHHHH-HHHHHTTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEEC-CTT----CHHHHHHHHHHHHHHHS
T ss_pred EEeCCCchHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEc-CCC----CHHHHHHHHHHHHHHcC
Confidence 5667766665542 3345678888877654433222222 223666666655 222 45555555432 112
Q ss_pred CcEEEEeCCCCCCCCC--CCCHHHHHHHHH
Q 013839 195 SSFFLLHPSAHNPTGV--DPTEEQWREISY 222 (435)
Q Consensus 195 ~~~~v~~~~p~NPtG~--~~~~~~l~~i~~ 222 (435)
+..+++.+....+.+. ..+.+++++..+
T Consensus 105 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~ 134 (277)
T 4fc7_A 105 RIDILINCAAGNFLCPAGALSFNAFKTVMD 134 (277)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHH
T ss_pred CCCEEEECCcCCCCCCcccCCHHHHHHHHH
Confidence 4566664433222221 246666666554
No 341
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=22.34 E-value=1.3e+02 Score=27.25 Aligned_cols=72 Identities=6% Similarity=-0.024 Sum_probs=44.0
Q ss_pred ChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceee
Q 013839 153 WSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPF 232 (435)
Q Consensus 153 y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi 232 (435)
|..+.+++..-..+.+.+.+ ++ ..-.+...++++ ...-+++ .=|.+ .+.++.++|.+.|++++..+.
T Consensus 75 y~d~~ell~~~~iDaV~I~t--P~--~~H~~~~~~al~---aGkhVl~----EKPla--~~~~ea~~l~~~a~~~~~~l~ 141 (350)
T 4had_A 75 FGSYEEMLASDVIDAVYIPL--PT--SQHIEWSIKAAD---AGKHVVC----EKPLA--LKAGDIDAVIAARDRNKVVVT 141 (350)
T ss_dssp ESSHHHHHHCSSCSEEEECS--CG--GGHHHHHHHHHH---TTCEEEE----CSCCC--SSGGGGHHHHHHHHHHTCCEE
T ss_pred eCCHHHHhcCCCCCEEEEeC--CC--chhHHHHHHHHh---cCCEEEE----eCCcc--cchhhHHHHHHHHHHcCCcee
Confidence 55566666655566666654 22 233455556665 3333333 45554 456788899999999998888
Q ss_pred eeccC
Q 013839 233 FDMAY 237 (435)
Q Consensus 233 ~Deay 237 (435)
+.-.+
T Consensus 142 v~~~~ 146 (350)
T 4had_A 142 EAYMI 146 (350)
T ss_dssp ECCGG
T ss_pred Eeeee
Confidence 76553
No 342
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*
Probab=22.25 E-value=3.5e+02 Score=22.70 Aligned_cols=95 Identities=15% Similarity=0.007 Sum_probs=46.1
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCC-hhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhc---CCCCcE
Q 013839 122 QALSGTGACRLFAEFQRRFHPESHIYFPDPTW-SNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKN---APDSSF 197 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y-~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~---~~~~~~ 197 (435)
++.|+++.+-... ...+...|.+|++.+-.- ......++..|.++..+.. |-. |.+++++.+++ .-.+..
T Consensus 11 lVTGas~gIG~~i-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-Dv~----~~~~v~~~~~~~~~~~g~id 84 (249)
T 2ew8_A 11 VITGGANGIGRAI-AERFAVEGADIAIADLVPAPEAEAAIRNLGRRVLTVKC-DVS----QPGDVEAFGKQVISTFGRCD 84 (249)
T ss_dssp EEETTTSHHHHHH-HHHHHHTTCEEEEEESSCCHHHHHHHHHTTCCEEEEEC-CTT----CHHHHHHHHHHHHHHHSCCC
T ss_pred EEeCCCcHHHHHH-HHHHHHCCCEEEEEcCCchhHHHHHHHhcCCcEEEEEe-ecC----CHHHHHHHHHHHHHHcCCCC
Confidence 4566666665442 233455787877654322 2222234445666666654 222 45555555432 112456
Q ss_pred EEEeCCCCCCCCC--CCCHHHHHHHHH
Q 013839 198 FLLHPSAHNPTGV--DPTEEQWREISY 222 (435)
Q Consensus 198 ~v~~~~p~NPtG~--~~~~~~l~~i~~ 222 (435)
+++.+....+.+. ..+.++++++.+
T Consensus 85 ~lv~nAg~~~~~~~~~~~~~~~~~~~~ 111 (249)
T 2ew8_A 85 ILVNNAGIYPLIPFDELTFEQWKKTFE 111 (249)
T ss_dssp EEEECCCCCCCCCGGGCCHHHHHHHHH
T ss_pred EEEECCCCCCCCCcccCCHHHHHHHHH
Confidence 6665433222221 235666665554
No 343
>2wc7_A Alpha amylase, catalytic region; CD/PUL-hydrolyzing enzymes, hydrolase, glycosidase, neopullu; 2.37A {Nostoc punctiforme} PDB: 2wcs_A 2wkg_A
Probab=22.11 E-value=57 Score=31.46 Aligned_cols=30 Identities=10% Similarity=0.106 Sum_probs=26.1
Q ss_pred CHHHHHHHHHHHHhcCceeeeeccCCCccC
Q 013839 213 TEEQWREISYQFKVKGHFPFFDMAYQGFAS 242 (435)
Q Consensus 213 ~~~~l~~i~~~~~~~~~~vi~Deay~~~~~ 242 (435)
+.++++++++-|+++|+-||.|-++...+.
T Consensus 101 t~~df~~Lv~~aH~~Gi~VilD~V~NH~s~ 130 (488)
T 2wc7_A 101 GNEAFKELLDAAHQRNIKVVLDGVFNHSSR 130 (488)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEECCSBCCS
T ss_pred CHHHHHHHHHHHHHCCCEEEEEeCCCcCCC
Confidence 478999999999999999999999866653
No 344
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}
Probab=21.93 E-value=2.2e+02 Score=25.05 Aligned_cols=70 Identities=9% Similarity=-0.004 Sum_probs=44.8
Q ss_pred ChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceee
Q 013839 153 WSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPF 232 (435)
Q Consensus 153 y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi 232 (435)
|..+..++. ..+++.+-+ ++ ....+...++++ ....++ + .-|.+ .+.++.+++.+.|+++|+.+.
T Consensus 57 ~~~~~~ll~--~~D~V~i~t--p~--~~h~~~~~~al~---~gk~vl-~---EKP~~--~~~~~~~~l~~~a~~~g~~~~ 121 (308)
T 3uuw_A 57 FDSIESLAK--KCDCIFLHS--ST--ETHYEIIKILLN---LGVHVY-V---DKPLA--STVSQGEELIELSTKKNLNLM 121 (308)
T ss_dssp CSCHHHHHT--TCSEEEECC--CG--GGHHHHHHHHHH---TTCEEE-E---CSSSS--SSHHHHHHHHHHHHHHTCCEE
T ss_pred cCCHHHHHh--cCCEEEEeC--Cc--HhHHHHHHHHHH---CCCcEE-E---cCCCC--CCHHHHHHHHHHHHHcCCEEE
Confidence 555666655 566666654 22 234555666666 333444 3 44554 468899999999999999888
Q ss_pred eeccC
Q 013839 233 FDMAY 237 (435)
Q Consensus 233 ~Deay 237 (435)
+...+
T Consensus 122 v~~~~ 126 (308)
T 3uuw_A 122 VGFNR 126 (308)
T ss_dssp ECCGG
T ss_pred Eeecc
Confidence 87653
No 345
>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*
Probab=21.89 E-value=2.8e+02 Score=23.72 Aligned_cols=95 Identities=12% Similarity=0.036 Sum_probs=49.7
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhc---CCCCcEE
Q 013839 122 QALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKN---APDSSFF 198 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~---~~~~~~~ 198 (435)
++.||+.++=... ...+...|-+|++.+-.-...... ...+.+...+.. |-. |.+++++.+++ .-.+..+
T Consensus 6 lVTGas~GIG~ai-a~~la~~Ga~V~~~~~~~~~~~~~-~~~~~~~~~~~~-Dv~----~~~~v~~~v~~~~~~~g~iDi 78 (247)
T 3ged_A 6 IVTGGGHGIGKQI-CLDFLEAGDKVCFIDIDEKRSADF-AKERPNLFYFHG-DVA----DPLTLKKFVEYAMEKLQRIDV 78 (247)
T ss_dssp EEESTTSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHH-HTTCTTEEEEEC-CTT----SHHHHHHHHHHHHHHHSCCCE
T ss_pred EEecCCCHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHH-HHhcCCEEEEEe-cCC----CHHHHHHHHHHHHHHcCCCCE
Confidence 4556666655542 334566898888766442222222 233455666554 222 44555544432 1134567
Q ss_pred EEeCCCCCCCCC--CCCHHHHHHHHHH
Q 013839 199 LLHPSAHNPTGV--DPTEEQWREISYQ 223 (435)
Q Consensus 199 v~~~~p~NPtG~--~~~~~~l~~i~~~ 223 (435)
++.+...++.+. .++.++|+++.++
T Consensus 79 LVNNAG~~~~~~~~~~~~e~~~~~~~v 105 (247)
T 3ged_A 79 LVNNACRGSKGILSSLLYEEFDYILSV 105 (247)
T ss_dssp EEECCCCCCCCGGGTCCHHHHHHHHHH
T ss_pred EEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 775544444433 3467778777664
No 346
>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A
Probab=21.73 E-value=1.8e+02 Score=26.23 Aligned_cols=71 Identities=15% Similarity=0.080 Sum_probs=45.7
Q ss_pred ChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceee
Q 013839 153 WSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPF 232 (435)
Q Consensus 153 y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi 232 (435)
|..+..++..-..+++.+.+ ++ ....+...++++ ....+++ .-|.+ .+.++.++|.+.|+++|+.+.
T Consensus 54 ~~~~~~ll~~~~~D~V~i~t--p~--~~h~~~~~~al~---aGk~Vl~----EKP~a--~~~~e~~~l~~~a~~~g~~~~ 120 (349)
T 3i23_A 54 TADLNELLTDPEIELITICT--PA--HTHYDLAKQAIL---AGKSVIV----EKPFC--DTLEHAEELFALGQEKGVVVM 120 (349)
T ss_dssp ESCTHHHHSCTTCCEEEECS--CG--GGHHHHHHHHHH---TTCEEEE----CSCSC--SSHHHHHHHHHHHHHTTCCEE
T ss_pred ECCHHHHhcCCCCCEEEEeC--Cc--HHHHHHHHHHHH---cCCEEEE----ECCCc--CCHHHHHHHHHHHHHcCCeEE
Confidence 44556666655567776654 22 234566666666 3434444 45654 578899999999999998887
Q ss_pred eecc
Q 013839 233 FDMA 236 (435)
Q Consensus 233 ~Dea 236 (435)
+...
T Consensus 121 v~~~ 124 (349)
T 3i23_A 121 PYQN 124 (349)
T ss_dssp ECCG
T ss_pred EEec
Confidence 7444
No 347
>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*
Probab=21.57 E-value=3.7e+02 Score=22.68 Aligned_cols=95 Identities=12% Similarity=-0.009 Sum_probs=43.7
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhc---CCCCcEE
Q 013839 122 QALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKN---APDSSFF 198 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~---~~~~~~~ 198 (435)
++.|+++.+-... ...+...|.+|++.+-.-.......+..+.++..+.. |-. |.+++++.+++ .-.+..+
T Consensus 9 lVTGas~gIG~~i-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-D~~----~~~~~~~~~~~~~~~~g~iD~ 82 (254)
T 1hdc_A 9 IITGGARGLGAEA-ARQAVAAGARVVLADVLDEEGAATARELGDAARYQHL-DVT----IEEDWQRVVAYAREEFGSVDG 82 (254)
T ss_dssp EEETTTSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHHTTGGGEEEEEC-CTT----CHHHHHHHHHHHHHHHSCCCE
T ss_pred EEECCCcHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEe-cCC----CHHHHHHHHHHHHHHcCCCCE
Confidence 4566666655442 2334567888876543322223333333444544444 222 45555555432 1124566
Q ss_pred EEeCCCCCCCCC--CCCHHHHHHHHH
Q 013839 199 LLHPSAHNPTGV--DPTEEQWREISY 222 (435)
Q Consensus 199 v~~~~p~NPtG~--~~~~~~l~~i~~ 222 (435)
++.+....+.+. ..+.+++++..+
T Consensus 83 lv~nAg~~~~~~~~~~~~~~~~~~~~ 108 (254)
T 1hdc_A 83 LVNNAGISTGMFLETESVERFRKVVE 108 (254)
T ss_dssp EEECCCCCCCSCGGGSCHHHHHHHHH
T ss_pred EEECCCCCCCCChhhCCHHHHHHHHH
Confidence 664432222221 235555655443
No 348
>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}
Probab=21.55 E-value=1.3e+02 Score=27.12 Aligned_cols=73 Identities=11% Similarity=0.183 Sum_probs=48.8
Q ss_pred CChhhHHHHhh-CCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCce
Q 013839 152 TWSNHHNIWRD-AQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHF 230 (435)
Q Consensus 152 ~y~~~~~~~~~-~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~ 230 (435)
.|..+..++.. -..+++.+.+ ++ ..-.+...++++ ....++ + .-|.+ .+.++.++|.+.|+++|..
T Consensus 68 ~~~~~~~ll~~~~~vD~V~i~t--p~--~~H~~~~~~al~---aGkhVl-~---EKP~a--~~~~e~~~l~~~a~~~g~~ 134 (330)
T 4ew6_A 68 SYTTIEAMLDAEPSIDAVSLCM--PP--QYRYEAAYKALV---AGKHVF-L---EKPPG--ATLSEVADLEALANKQGAS 134 (330)
T ss_dssp EESSHHHHHHHCTTCCEEEECS--CH--HHHHHHHHHHHH---TTCEEE-E---CSSSC--SSHHHHHHHHHHHHHHTCC
T ss_pred ccCCHHHHHhCCCCCCEEEEeC--Cc--HHHHHHHHHHHH---cCCcEE-E---eCCCC--CCHHHHHHHHHHHHhcCCe
Confidence 45667777776 5677777755 22 234556666666 343444 3 45554 4688999999999999998
Q ss_pred eeeeccC
Q 013839 231 PFFDMAY 237 (435)
Q Consensus 231 vi~Deay 237 (435)
+.+-..+
T Consensus 135 ~~v~~~~ 141 (330)
T 4ew6_A 135 LFASWHS 141 (330)
T ss_dssp EEECCGG
T ss_pred EEEEehh
Confidence 8876553
No 349
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=21.42 E-value=2.4e+02 Score=22.10 Aligned_cols=59 Identities=10% Similarity=-0.022 Sum_probs=37.2
Q ss_pred CCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHH-HHHHHHH-HHHhcCce-eeeeccCC
Q 013839 178 KSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEE-QWREISY-QFKVKGHF-PFFDMAYQ 238 (435)
Q Consensus 178 ~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~-~l~~i~~-~~~~~~~~-vi~Deay~ 238 (435)
...+.+.|.+.+.+ .++..+++.-|-|.-|..-... +.++++. ++++.++. .++||.|.
T Consensus 40 ~~~~~~~l~~li~~--~~~~~ivVGlP~~~nGt~~~~~~~ar~f~~~L~~~~~lpV~~vDEr~T 101 (150)
T 1vhx_A 40 GDYGLSRLSELIKD--YTIDKIVLGFPKNMNGTVGPRGEASQTFAKVLETTYNVPVVLWDERLT 101 (150)
T ss_dssp TBCCHHHHHHHHTT--SEEEEEEEECCCCBTTBCCHHHHHHHHHHHHHHHHHCSCEEEECCSSC
T ss_pred hHHHHHHHHHHHHH--cCCCEEEEeeeecCCcchhHHHHHHHHHHHHHHHhhCCCEEEecCCCC
Confidence 34578899998885 3577888888866666553222 2245553 34445655 56699864
No 350
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=21.21 E-value=1.6e+02 Score=26.61 Aligned_cols=65 Identities=14% Similarity=-0.012 Sum_probs=38.0
Q ss_pred hCCCCEEEEcCCCChh-------h---HHHHhhCCCCeeeeeecCCCCC---Cc---ChHhHHHHhhcCCCCcEEEEeCC
Q 013839 140 FHPESHIYFPDPTWSN-------H---HNIWRDAQIPERTYHYYDPDSK---SL---DFAALMDDIKNAPDSSFFLLHPS 203 (435)
Q Consensus 140 ~~~gd~Vlv~~p~y~~-------~---~~~~~~~g~~~~~v~~~~~~~~---~~---d~e~l~~~i~~~~~~~~~v~~~~ 203 (435)
+++||+|-+..|+.+. + ...++..|.+++.-+....... +- -.++|.+++.. +..++|+-..
T Consensus 9 L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~D--p~i~aI~~~r 86 (327)
T 4h1h_A 9 LKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFND--SSVKAILTVI 86 (327)
T ss_dssp CCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHC--TTEEEEEESC
T ss_pred CCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhC--CCCCEEEEcC
Confidence 6799999999998642 1 2346678888876543212111 11 23566666653 5667777554
Q ss_pred CCC
Q 013839 204 AHN 206 (435)
Q Consensus 204 p~N 206 (435)
...
T Consensus 87 GG~ 89 (327)
T 4h1h_A 87 GGF 89 (327)
T ss_dssp CCS
T ss_pred Cch
Confidence 443
No 351
>1zja_A Trehalulose synthase; sucrose isomerase, alpha-amylase family, (beta/alpha)8 barrel; 1.60A {Pseudomonas mesoacidophila} PDB: 1zjb_A 2pwd_A* 2pwh_A 2pwg_A 2pwe_A* 2pwf_A* 3gbe_A* 3gbd_A*
Probab=20.91 E-value=77 Score=31.18 Aligned_cols=31 Identities=16% Similarity=0.211 Sum_probs=27.2
Q ss_pred CCHHHHHHHHHHHHhcCceeeeeccCCCccC
Q 013839 212 PTEEQWREISYQFKVKGHFPFFDMAYQGFAS 242 (435)
Q Consensus 212 ~~~~~l~~i~~~~~~~~~~vi~Deay~~~~~ 242 (435)
.+.++++++++-|+++|+-||.|-++...+.
T Consensus 77 Gt~~df~~Lv~~aH~~Gi~VilD~V~NHts~ 107 (557)
T 1zja_A 77 GTMEDFDRLMAELKKRGMRLMVDVVINHSSD 107 (557)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEECCSBCCT
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEEecccccc
Confidence 4689999999999999999999999876653
No 352
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}
Probab=20.84 E-value=3.9e+02 Score=22.72 Aligned_cols=94 Identities=10% Similarity=-0.038 Sum_probs=45.6
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHh---hC--CCCeeeeeecCCCCCCcChHhHHHHhhcCCCCc
Q 013839 122 QALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWR---DA--QIPERTYHYYDPDSKSLDFAALMDDIKNAPDSS 196 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~---~~--g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~ 196 (435)
++.||++.+-... ...+...|.+|++.+-.-.......+ .. +..+..+.. |- -|.+.+++.+++. .+.
T Consensus 14 lVTGas~gIG~ai-a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~-D~----~~~~~~~~~~~~~-g~i 86 (267)
T 3t4x_A 14 LVTGSTAGIGKAI-ATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVA-DL----GTEQGCQDVIEKY-PKV 86 (267)
T ss_dssp EETTCSSHHHHHH-HHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEEC-CT----TSHHHHHHHHHHC-CCC
T ss_pred EEeCCCcHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEec-CC----CCHHHHHHHHHhc-CCC
Confidence 5666666655542 23345688888776543322222222 22 333444443 22 2566677666654 245
Q ss_pred EEEEeCCCCCCCCC--CCCHHHHHHHHH
Q 013839 197 FFLLHPSAHNPTGV--DPTEEQWREISY 222 (435)
Q Consensus 197 ~~v~~~~p~NPtG~--~~~~~~l~~i~~ 222 (435)
.+++.+....+.+. ..+.+++++..+
T Consensus 87 d~lv~nAg~~~~~~~~~~~~~~~~~~~~ 114 (267)
T 3t4x_A 87 DILINNLGIFEPVEYFDIPDEDWFKLFE 114 (267)
T ss_dssp SEEEECCCCCCCCCGGGSCHHHHHHHHH
T ss_pred CEEEECCCCCCCCccccCCHHHHHHHHH
Confidence 56664433222221 235566655544
No 353
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}
Probab=20.79 E-value=2.4e+02 Score=25.15 Aligned_cols=72 Identities=10% Similarity=-0.028 Sum_probs=45.2
Q ss_pred ChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceee
Q 013839 153 WSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPF 232 (435)
Q Consensus 153 y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi 232 (435)
|..+..++..-..+++.+-+ ++ ....+...+++. ....+++ ..|.+ .+.++.+++.+.++++++.+.
T Consensus 52 ~~~~~~~l~~~~~D~V~i~t--p~--~~h~~~~~~al~---~gk~v~~----EKP~~--~~~~~~~~l~~~a~~~g~~~~ 118 (331)
T 4hkt_A 52 VRTIDAIEAAADIDAVVICT--PT--DTHADLIERFAR---AGKAIFC----EKPID--LDAERVRACLKVVSDTKAKLM 118 (331)
T ss_dssp ECCHHHHHHCTTCCEEEECS--CG--GGHHHHHHHHHH---TTCEEEE----CSCSC--SSHHHHHHHHHHHHHTTCCEE
T ss_pred cCCHHHHhcCCCCCEEEEeC--Cc--hhHHHHHHHHHH---cCCcEEE----ecCCC--CCHHHHHHHHHHHHHcCCeEE
Confidence 45556666544566666644 21 234455556665 3334443 45554 568899999999999998888
Q ss_pred eeccC
Q 013839 233 FDMAY 237 (435)
Q Consensus 233 ~Deay 237 (435)
+...+
T Consensus 119 v~~~~ 123 (331)
T 4hkt_A 119 VGFNR 123 (331)
T ss_dssp ECCGG
T ss_pred Ecccc
Confidence 76553
No 354
>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}
Probab=20.70 E-value=2.9e+02 Score=24.67 Aligned_cols=72 Identities=13% Similarity=0.019 Sum_probs=45.5
Q ss_pred CChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCcee
Q 013839 152 TWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFP 231 (435)
Q Consensus 152 ~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~v 231 (435)
.|..+..++..-..+++.+.+ ++ ....+...++++ ....+++ .-|.. .+.++.++|.+.|++++..+
T Consensus 54 ~~~~~~~ll~~~~~D~V~i~t--p~--~~h~~~~~~al~---aGkhVl~----EKP~a--~~~~e~~~l~~~a~~~g~~~ 120 (336)
T 2p2s_A 54 FAASAEQLITDASIDLIACAV--IP--CDRAELALRTLD---AGKDFFT----AKPPL--TTLEQLDAVQRRVAETGRKF 120 (336)
T ss_dssp BCSCHHHHHTCTTCCEEEECS--CG--GGHHHHHHHHHH---TTCEEEE----CSSCC--SCHHHHHHHHHHHHHHCCCE
T ss_pred ccCCHHHHhhCCCCCEEEEeC--Ch--hhHHHHHHHHHH---CCCcEEE----eCCCC--CCHHHHHHHHHHHHHcCCEE
Confidence 455666666655667776654 22 234455666666 3333443 34544 46789999999999999888
Q ss_pred eeecc
Q 013839 232 FFDMA 236 (435)
Q Consensus 232 i~Dea 236 (435)
.+...
T Consensus 121 ~v~~~ 125 (336)
T 2p2s_A 121 AVYFN 125 (336)
T ss_dssp EECCT
T ss_pred EEeec
Confidence 76544
No 355
>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2
Probab=20.68 E-value=3.8e+02 Score=22.53 Aligned_cols=95 Identities=9% Similarity=-0.019 Sum_probs=46.3
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcC---CCCcEE
Q 013839 122 QALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNA---PDSSFF 198 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~---~~~~~~ 198 (435)
++.|+++.+-... ...+...|.+|++.+-.-.......+..+.++..+.. |- -|.+++++.+++. ..+..+
T Consensus 10 lVTGas~giG~~i-a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-D~----~~~~~v~~~~~~~~~~~g~id~ 83 (253)
T 1hxh_A 10 LVTGGASGVGLEV-VKLLLGEGAKVAFSDINEAAGQQLAAELGERSMFVRH-DV----SSEADWTLVMAAVQRRLGTLNV 83 (253)
T ss_dssp EETTTTSHHHHHH-HHHHHHTTCEEEEECSCHHHHHHHHHHHCTTEEEECC-CT----TCHHHHHHHHHHHHHHHCSCCE
T ss_pred EEeCCCcHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHcCCceEEEEc-cC----CCHHHHHHHHHHHHHHcCCCCE
Confidence 4667776665542 2334557888877654333333333333555555544 22 2555555554421 123466
Q ss_pred EEeCCCCCCCCC--CCCHHHHHHHHH
Q 013839 199 LLHPSAHNPTGV--DPTEEQWREISY 222 (435)
Q Consensus 199 v~~~~p~NPtG~--~~~~~~l~~i~~ 222 (435)
++.+....+.+. ..+.+++++..+
T Consensus 84 lv~~Ag~~~~~~~~~~~~~~~~~~~~ 109 (253)
T 1hxh_A 84 LVNNAGILLPGDMETGRLEDFSRLLK 109 (253)
T ss_dssp EEECCCCCCCBCTTTCCHHHHHHHHH
T ss_pred EEECCCCCCCCCcccCCHHHHHHHHH
Confidence 664433222221 235566665554
No 356
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}
Probab=20.61 E-value=1.8e+02 Score=25.22 Aligned_cols=95 Identities=4% Similarity=-0.120 Sum_probs=47.3
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHH---HHhhCCCCeeeeeecCCCCCCcChHhHHHHhhc---CCCC
Q 013839 122 QALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHN---IWRDAQIPERTYHYYDPDSKSLDFAALMDDIKN---APDS 195 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~---~~~~ 195 (435)
++.||++.+-... ...+...|.+|++.+-.-..... .+...|.++..+.. |-. |.+++++.+++ .-.+
T Consensus 36 lVTGas~GIG~ai-a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-Dl~----d~~~v~~~~~~~~~~~g~ 109 (276)
T 3r1i_A 36 LITGASTGIGKKV-ALAYAEAGAQVAVAARHSDALQVVADEIAGVGGKALPIRC-DVT----QPDQVRGMLDQMTGELGG 109 (276)
T ss_dssp EEESTTSHHHHHH-HHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCCCEEEEC-CTT----CHHHHHHHHHHHHHHHSC
T ss_pred EEeCCCCHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEc-CCC----CHHHHHHHHHHHHHHcCC
Confidence 4666666665542 23345678888776543332222 23345656666655 222 55555555442 1124
Q ss_pred cEEEEeCCCCCCCCC--CCCHHHHHHHHH
Q 013839 196 SFFLLHPSAHNPTGV--DPTEEQWREISY 222 (435)
Q Consensus 196 ~~~v~~~~p~NPtG~--~~~~~~l~~i~~ 222 (435)
..+++.+....+.+. ..+.++++++.+
T Consensus 110 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~ 138 (276)
T 3r1i_A 110 IDIAVCNAGIVSVQAMLDMPLEEFQRIQD 138 (276)
T ss_dssp CSEEEECCCCCCCCCGGGCCHHHHHHHHH
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHH
Confidence 556664433222222 235666666554
No 357
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=20.46 E-value=1.8e+02 Score=26.94 Aligned_cols=72 Identities=4% Similarity=-0.083 Sum_probs=40.3
Q ss_pred hCCCCEEEEcCCCChhh----------HHHHhhCCCCeeeeeecCCCC---CCcC---hHhHHHHhhcCCCCcEEEEeCC
Q 013839 140 FHPESHIYFPDPTWSNH----------HNIWRDAQIPERTYHYYDPDS---KSLD---FAALMDDIKNAPDSSFFLLHPS 203 (435)
Q Consensus 140 ~~~gd~Vlv~~p~y~~~----------~~~~~~~g~~~~~v~~~~~~~---~~~d---~e~l~~~i~~~~~~~~~v~~~~ 203 (435)
+++||+|-+.+|+.+.. ...++..|.+++.-+...... .+-| .++|.+++.. +..++|+-..
T Consensus 40 Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~D--p~i~aI~~~r 117 (371)
T 3tla_A 40 LAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYN--PDITCIMSTI 117 (371)
T ss_dssp CCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTC--TTEEEEEESC
T ss_pred CCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhC--CCCCEEEEcc
Confidence 57899999999987532 224567888887665421211 1112 3555555552 4567777555
Q ss_pred CCCCCCCCCC
Q 013839 204 AHNPTGVDPT 213 (435)
Q Consensus 204 p~NPtG~~~~ 213 (435)
...=+-.+++
T Consensus 118 GGyga~rlLp 127 (371)
T 3tla_A 118 GGDNSNSLLP 127 (371)
T ss_dssp CCSCGGGGGG
T ss_pred ccccHHHHHh
Confidence 4443333333
No 358
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=20.46 E-value=4.9e+02 Score=23.75 Aligned_cols=17 Identities=18% Similarity=0.358 Sum_probs=9.9
Q ss_pred HHHHHHHHHhcCceeee
Q 013839 217 WREISYQFKVKGHFPFF 233 (435)
Q Consensus 217 l~~i~~~~~~~~~~vi~ 233 (435)
+.+|..+++++++.+|.
T Consensus 190 lr~L~~~a~~~~~~VI~ 206 (366)
T 1xp8_A 190 LRKLTAILSKTGTAAIF 206 (366)
T ss_dssp HHHHHHHHTTTCCEEEE
T ss_pred HHHHHHHHHHcCCEEEE
Confidence 44455556777765544
No 359
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0
Probab=20.46 E-value=3.2e+02 Score=23.45 Aligned_cols=28 Identities=11% Similarity=-0.170 Sum_probs=16.9
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEEEcC
Q 013839 122 QALSGTGACRLFAEFQRRFHPESHIYFPD 150 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~ 150 (435)
++.|+++.+-... ...+...|.+|++.+
T Consensus 19 lVTGas~gIG~a~-a~~la~~G~~V~~~~ 46 (280)
T 3pgx_A 19 FITGAARGQGRSH-AVRLAAEGADIIACD 46 (280)
T ss_dssp EEESTTSHHHHHH-HHHHHHTTCEEEEEE
T ss_pred EEECCCcHHHHHH-HHHHHHCCCEEEEEe
Confidence 5667766665542 233556888887653
No 360
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Probab=20.35 E-value=4.3e+02 Score=23.02 Aligned_cols=95 Identities=9% Similarity=0.077 Sum_probs=47.6
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHH---HhhCCCCeeeeeecCCCCCCcChHhHHHHhhcC---CCC
Q 013839 122 QALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNI---WRDAQIPERTYHYYDPDSKSLDFAALMDDIKNA---PDS 195 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~---~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~---~~~ 195 (435)
++.|+++++-... ...+...|.+|++.+-.-...... ++..|.++..+.. |-. |.+.+++.+++. ..+
T Consensus 35 lVTGas~gIG~~l-a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~-Dv~----d~~~v~~~~~~~~~~~g~ 108 (301)
T 3tjr_A 35 VVTGGASGIGLAT-ATEFARRGARLVLSDVDQPALEQAVNGLRGQGFDAHGVVC-DVR----HLDEMVRLADEAFRLLGG 108 (301)
T ss_dssp EEETTTSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEEC-CTT----CHHHHHHHHHHHHHHHSS
T ss_pred EEeCCCCHHHHHH-HHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEc-cCC----CHHHHHHHHHHHHHhCCC
Confidence 4667776665542 233456888887765433333222 3344666666655 222 555555554421 124
Q ss_pred cEEEEeCCCCCCCCC--CCCHHHHHHHHH
Q 013839 196 SFFLLHPSAHNPTGV--DPTEEQWREISY 222 (435)
Q Consensus 196 ~~~v~~~~p~NPtG~--~~~~~~l~~i~~ 222 (435)
..+++.+....+.+. ..+.++++++.+
T Consensus 109 id~lvnnAg~~~~~~~~~~~~~~~~~~~~ 137 (301)
T 3tjr_A 109 VDVVFSNAGIVVAGPLAQMNHDDWRWVID 137 (301)
T ss_dssp CSEEEECCCCCCCBCGGGCCHHHHHHHHH
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHHH
Confidence 456664433222222 245666666554
No 361
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2
Probab=20.31 E-value=3.8e+02 Score=22.33 Aligned_cols=95 Identities=6% Similarity=0.076 Sum_probs=46.9
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhH---HHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhc---CCCC
Q 013839 122 QALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHH---NIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKN---APDS 195 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~---~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~---~~~~ 195 (435)
++.|+++.+-... ...+...|.+|++..-.-.... ..++..+.++..+.. |-. |.+++++.+++ ...+
T Consensus 9 lITGas~gIG~~~-a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-D~~----~~~~~~~~~~~~~~~~~~ 82 (247)
T 3lyl_A 9 LVTGASRGIGFEV-AHALASKGATVVGTATSQASAEKFENSMKEKGFKARGLVL-NIS----DIESIQNFFAEIKAENLA 82 (247)
T ss_dssp EESSCSSHHHHHH-HHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEEC-CTT----CHHHHHHHHHHHHHTTCC
T ss_pred EEECCCChHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEe-cCC----CHHHHHHHHHHHHHHcCC
Confidence 4667766665442 2334567888876654332222 223345666666655 222 45555554432 2234
Q ss_pred cEEEEeCCCCCCCCC--CCCHHHHHHHHH
Q 013839 196 SFFLLHPSAHNPTGV--DPTEEQWREISY 222 (435)
Q Consensus 196 ~~~v~~~~p~NPtG~--~~~~~~l~~i~~ 222 (435)
..+++.+....+.+. ..+.+++++..+
T Consensus 83 id~li~~Ag~~~~~~~~~~~~~~~~~~~~ 111 (247)
T 3lyl_A 83 IDILVNNAGITRDNLMMRMSEDEWQSVIN 111 (247)
T ss_dssp CSEEEECCCCCCCCCGGGCCHHHHHHHHH
T ss_pred CCEEEECCCCCCCCchhhCCHHHHHHHHH
Confidence 566664433222222 235566655544
No 362
>1ytl_A Acetyl-COA decarboxylase/synthase complex epsilon 2; structural genomics; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6
Probab=20.23 E-value=1.8e+02 Score=23.53 Aligned_cols=46 Identities=15% Similarity=0.139 Sum_probs=33.6
Q ss_pred CcChHhH-HHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceeeee
Q 013839 179 SLDFAAL-MDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFPFFD 234 (435)
Q Consensus 179 ~~d~e~l-~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~vi~D 234 (435)
-+.+++. .+.|.++ +++.+++ -| +...+..+++.+++++ +++|+.-
T Consensus 21 ~~~i~~a~a~lI~~A-kRPvIl~-------Gg-v~~~~A~~eL~~~ae~-~iPVvtT 67 (174)
T 1ytl_A 21 LLEKGKPVANMIKKA-KRPLLIV-------GP-DMTDEMFERVKKFVEK-DITVVAT 67 (174)
T ss_dssp ECCCHHHHHHHHHHC-SSEEEEE-------CS-CCCHHHHHHHHHHHTS-SSEEEEE
T ss_pred eccHHHHHHHHHHcC-CCCEEEE-------CC-CCCccHHHHHHHHHHc-CCCEEEc
Confidence 3467787 8888876 4555554 44 4556778899999999 9999954
No 363
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2
Probab=20.22 E-value=4e+02 Score=22.66 Aligned_cols=95 Identities=5% Similarity=0.032 Sum_probs=45.1
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHHHH----hhCCCCeeeeeecCCCCCCcChHhHHHHhhcC---CC
Q 013839 122 QALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHNIW----RDAQIPERTYHYYDPDSKSLDFAALMDDIKNA---PD 194 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~---~~ 194 (435)
++.|+++.+-... ...+...|.+|++.+-.-....... +..|.++..+.. |-. |.+++++.+++. -.
T Consensus 25 lVTGas~gIG~~i-a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~-Dl~----~~~~v~~~~~~~~~~~g 98 (267)
T 1vl8_A 25 LVTGGSRGLGFGI-AQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRC-DVS----NYEEVKKLLEAVKEKFG 98 (267)
T ss_dssp EEETTTSHHHHHH-HHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEEC-CTT----CHHHHHHHHHHHHHHHS
T ss_pred EEECCCCHHHHHH-HHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEEc-CCC----CHHHHHHHHHHHHHHcC
Confidence 4567766665542 2334567888877653322222222 223656665554 222 555555554421 12
Q ss_pred CcEEEEeCCCCCCCCC--CCCHHHHHHHHH
Q 013839 195 SSFFLLHPSAHNPTGV--DPTEEQWREISY 222 (435)
Q Consensus 195 ~~~~v~~~~p~NPtG~--~~~~~~l~~i~~ 222 (435)
+..+++.+....+.+. ..+.++++++.+
T Consensus 99 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~ 128 (267)
T 1vl8_A 99 KLDTVVNAAGINRRHPAEEFPLDEFRQVIE 128 (267)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHH
T ss_pred CCCEEEECCCcCCCCChhhCCHHHHHHHHH
Confidence 4556664433222221 235566665554
No 364
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}
Probab=20.15 E-value=2.8e+02 Score=23.78 Aligned_cols=96 Identities=10% Similarity=-0.020 Sum_probs=47.7
Q ss_pred ecCCchhHHHHHHHHHHHhCCCCEEEEcCCCChhhHH---HHhhCCCCeeeeeecCCCCCCcChHhHHHHhhc---CCCC
Q 013839 122 QALSGTGACRLFAEFQRRFHPESHIYFPDPTWSNHHN---IWRDAQIPERTYHYYDPDSKSLDFAALMDDIKN---APDS 195 (435)
Q Consensus 122 ~t~gg~~a~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~---~~~~ 195 (435)
++.||++++-... ...+...|.+|++.+-.-..... .++..|.++..+.. |-. |.+++++.+++ .-.+
T Consensus 8 lVTGas~GIG~ai-a~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~-Dv~----d~~~v~~~~~~~~~~~g~ 81 (264)
T 3tfo_A 8 LITGASGGIGEGI-ARELGVAGAKILLGARRQARIEAIATEIRDAGGTALAQVL-DVT----DRHSVAAFAQAAVDTWGR 81 (264)
T ss_dssp EESSTTSHHHHHH-HHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCEEEEEEC-CTT----CHHHHHHHHHHHHHHHSC
T ss_pred EEeCCccHHHHHH-HHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEc-CCC----CHHHHHHHHHHHHHHcCC
Confidence 5667776665542 23345688888776533222222 23344656655554 222 45555554432 1124
Q ss_pred cEEEEeCCCCCCCCC--CCCHHHHHHHHHH
Q 013839 196 SFFLLHPSAHNPTGV--DPTEEQWREISYQ 223 (435)
Q Consensus 196 ~~~v~~~~p~NPtG~--~~~~~~l~~i~~~ 223 (435)
..+++.+....+.+. ..+.++++++.+.
T Consensus 82 iD~lVnnAG~~~~~~~~~~~~~~~~~~~~v 111 (264)
T 3tfo_A 82 IDVLVNNAGVMPLSPLAAVKVDEWERMIDV 111 (264)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHHH
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHH
Confidence 566665443333332 2366666665553
No 365
>1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta sandwich, transferase; 2.30A {Escherichia coli} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 3o7y_A* 3o7z_A*
Probab=20.08 E-value=68 Score=32.07 Aligned_cols=31 Identities=16% Similarity=0.095 Sum_probs=27.4
Q ss_pred CCCHHHHHHHHHHHHhcCceeeeeccCCCcc
Q 013839 211 DPTEEQWREISYQFKVKGHFPFFDMAYQGFA 241 (435)
Q Consensus 211 ~~~~~~l~~i~~~~~~~~~~vi~Deay~~~~ 241 (435)
..+.++++++++-|+++|+-||.|-++....
T Consensus 201 ~Gt~~~~~~lv~~~H~~Gi~VilD~V~NH~~ 231 (617)
T 1m7x_A 201 FGTRDDFRYFIDAAHAAGLNVILDWVPGHFP 231 (617)
T ss_dssp GSCHHHHHHHHHHHHHTTCEEEEEECTTSCC
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEEecCccc
Confidence 3468999999999999999999999987664
No 366
>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}
Probab=20.04 E-value=2.7e+02 Score=24.76 Aligned_cols=72 Identities=14% Similarity=0.107 Sum_probs=43.7
Q ss_pred CChhhHHHHhhCCCCeeeeeecCCCCCCcChHhHHHHhhcCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCcee
Q 013839 152 TWSNHHNIWRDAQIPERTYHYYDPDSKSLDFAALMDDIKNAPDSSFFLLHPSAHNPTGVDPTEEQWREISYQFKVKGHFP 231 (435)
Q Consensus 152 ~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~e~l~~~i~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~v 231 (435)
.|..+..++...+.+++.+-+ ++ ....+...++++ ....+++ ..|.+ .+.++.+++.+.|+++++.+
T Consensus 50 ~~~~~~~~l~~~~~D~V~i~t--p~--~~h~~~~~~al~---~Gk~v~~----ekP~~--~~~~~~~~l~~~a~~~g~~~ 116 (332)
T 2glx_A 50 SVTSVEELVGDPDVDAVYVST--TN--ELHREQTLAAIR---AGKHVLC----EKPLA--MTLEDAREMVVAAREAGVVL 116 (332)
T ss_dssp CBSCHHHHHTCTTCCEEEECS--CG--GGHHHHHHHHHH---TTCEEEE----CSSSC--SSHHHHHHHHHHHHHHTCCE
T ss_pred ccCCHHHHhcCCCCCEEEEeC--Ch--hHhHHHHHHHHH---CCCeEEE----eCCCc--CCHHHHHHHHHHHHHcCCEE
Confidence 345555555544566666644 11 123455556665 3334443 45654 47889999999999999887
Q ss_pred eeecc
Q 013839 232 FFDMA 236 (435)
Q Consensus 232 i~Dea 236 (435)
.+...
T Consensus 117 ~~~~~ 121 (332)
T 2glx_A 117 GTNHH 121 (332)
T ss_dssp EECCC
T ss_pred EEeeh
Confidence 76543
Done!