Your job contains 1 sequence.
>013840
MAESKKEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCF
VICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVS
ALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW
ADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQY
RLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQY
PMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSGGQIEGPPGANLFIYHIPQE
FGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKK
LKVQLKRDNKQNKPY
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 013840
(435 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2139340 - symbol:RBP-DR1 "RNA-binding protein-... 1419 3.2e-145 1
TAIR|locus:2825067 - symbol:BRN2 "Bruno-like 2" species:3... 1246 6.8e-127 1
FB|FBgn0262475 - symbol:bru-2 "bruno-2" species:7227 "Dro... 445 9.2e-66 2
DICTYBASE|DDB_G0291486 - symbol:DDB_G0291486 "putative sp... 445 2.6e-65 2
ZFIN|ZDB-GENE-000501-1 - symbol:celf1 "cugbp, Elav-like f... 407 3.3e-65 2
ZFIN|ZDB-GENE-000501-2 - symbol:celf3a "cugbp, Elav-like ... 415 5.4e-65 2
UNIPROTKB|F1ND14 - symbol:CELF1 "CUGBP Elav-like family m... 376 9.0e-65 3
UNIPROTKB|Q08E07 - symbol:CELF3 "CUGBP Elav-like family m... 404 2.3e-64 2
MGI|MGI:1926034 - symbol:Celf3 "CUGBP, Elav-like family m... 403 1.3e-63 2
ZFIN|ZDB-GENE-040718-300 - symbol:celf4 "CUGBP, Elav-like... 405 1.6e-63 2
UNIPROTKB|Q7ZWM3 - symbol:tnrc4-b "CUGBP Elav-like family... 405 2.0e-63 2
UNIPROTKB|Q5SZQ8 - symbol:CELF3 "CUGBP Elav-like family m... 404 2.0e-63 2
UNIPROTKB|Q91579 - symbol:tnrc4-a "CUGBP Elav-like family... 403 4.2e-63 2
UNIPROTKB|Q5SZQ7 - symbol:CELF3 "CUGBP Elav-like family m... 404 5.4e-63 2
MGI|MGI:1342295 - symbol:Celf1 "CUGBP, Elav-like family m... 380 8.8e-63 2
RGD|1307721 - symbol:Celf1 "CUGBP, Elav-like family membe... 380 8.8e-63 2
UNIPROTKB|Q4QQT3 - symbol:Celf1 "CUGBP Elav-like family m... 380 8.8e-63 2
UNIPROTKB|A7MB95 - symbol:CUGBP1 "Uncharacterized protein... 379 1.1e-62 2
UNIPROTKB|E2R8F6 - symbol:CELF1 "Uncharacterized protein"... 379 1.1e-62 2
UNIPROTKB|G5EA30 - symbol:CELF1 "CUG triplet repeat, RNA ... 379 1.1e-62 2
UNIPROTKB|Q92879 - symbol:CELF1 "CUGBP Elav-like family m... 379 1.1e-62 2
FB|FBgn0000114 - symbol:aret "arrest" species:7227 "Droso... 417 1.2e-62 2
RGD|1563168 - symbol:Celf3 "CUGBP, Elav-like family membe... 404 2.9e-62 2
UNIPROTKB|Q5F3T7 - symbol:CELF1 "CUGBP Elav-like family m... 376 3.7e-62 2
UNIPROTKB|E1C045 - symbol:CELF2 "CUGBP Elav-like family m... 376 4.8e-62 2
UNIPROTKB|F1NZY6 - symbol:CELF2 "CUGBP Elav-like family m... 376 4.8e-62 2
UNIPROTKB|F1P017 - symbol:CELF2 "CUGBP Elav-like family m... 376 4.8e-62 2
UNIPROTKB|F1P674 - symbol:CELF2 "Uncharacterized protein"... 376 4.8e-62 2
UNIPROTKB|E9PC62 - symbol:CELF2 "CUGBP Elav-like family m... 376 4.8e-62 2
UNIPROTKB|O95319 - symbol:CELF2 "CUGBP Elav-like family m... 376 4.8e-62 2
UNIPROTKB|Q5VZZ6 - symbol:CELF2 "CUGBP Elav-like family m... 376 4.8e-62 2
MGI|MGI:1338822 - symbol:Celf2 "CUGBP, Elav-like family m... 376 4.8e-62 2
RGD|68347 - symbol:Celf2 "CUGBP, Elav-like family member ... 376 4.8e-62 2
ZFIN|ZDB-GENE-030826-35 - symbol:celf2 "cugbp, Elav-like ... 382 5.7e-62 2
UNIPROTKB|Q8N6W0 - symbol:CELF5 "CUGBP Elav-like family m... 391 6.1e-62 2
UNIPROTKB|Q7T2T1 - symbol:CELF2 "CUGBP Elav-like family m... 373 9.9e-62 2
UNIPROTKB|F1PXQ8 - symbol:CELF5 "Uncharacterized protein"... 384 2.0e-61 2
UNIPROTKB|E2RGA8 - symbol:CELF3 "Uncharacterized protein"... 376 3.3e-61 2
UNIPROTKB|Q5R995 - symbol:CELF1 "CUGBP Elav-like family m... 365 3.3e-61 2
UNIPROTKB|F1ST15 - symbol:CELF3 "Uncharacterized protein"... 376 1.1e-60 2
UNIPROTKB|H0Y623 - symbol:CELF3 "CUGBP Elav-like family m... 375 2.3e-60 2
ZFIN|ZDB-GENE-050208-746 - symbol:celf5 "cugbp, Elav-like... 385 3.4e-60 2
MGI|MGI:1923433 - symbol:Celf6 "CUGBP, Elav-like family m... 599 2.5e-58 1
RGD|1310451 - symbol:Celf6 "CUGBP, Elav-like family membe... 599 2.5e-58 1
UNIPROTKB|E2RJG5 - symbol:CELF6 "Uncharacterized protein"... 327 1.3e-57 2
WB|WBGene00001340 - symbol:etr-1 species:6239 "Caenorhabd... 359 1.3e-57 2
UNIPROTKB|F1SHM1 - symbol:CELF6 "Uncharacterized protein"... 592 1.4e-57 1
UNIPROTKB|E1B8K2 - symbol:CELF6 "Uncharacterized protein"... 590 2.2e-57 1
UNIPROTKB|Q96J87 - symbol:CELF6 "CUGBP Elav-like family m... 589 2.8e-57 1
WB|WBGene00006807 - symbol:unc-75 species:6239 "Caenorhab... 359 3.3e-57 2
ZFIN|ZDB-GENE-110408-50 - symbol:celf3b "cugbp, Elav-like... 354 4.2e-57 2
UNIPROTKB|B4DHA8 - symbol:CELF4 "CUGBP Elav-like family m... 405 3.8e-56 2
MGI|MGI:1932407 - symbol:Celf4 "CUGBP, Elav-like family m... 382 1.8e-53 3
DICTYBASE|DDB_G0270634 - symbol:DDB_G0270634 "putative sp... 380 5.4e-53 2
UNIPROTKB|F1S8E8 - symbol:CELF5 "Uncharacterized protein"... 299 1.8e-52 2
UNIPROTKB|F1NXF6 - symbol:BRUNOL6 "Uncharacterized protei... 354 7.3e-51 3
UNIPROTKB|F1MD42 - symbol:F1MD42 "Uncharacterized protein... 281 8.3e-48 2
FB|FBgn0264001 - symbol:bru-3 "bruno-3" species:7227 "Dro... 277 7.2e-45 2
UNIPROTKB|F1NYP4 - symbol:CELF4 "Uncharacterized protein"... 266 4.7e-44 2
UNIPROTKB|F1P5J4 - symbol:BRUNOL6 "Uncharacterized protei... 266 2.0e-43 2
RGD|1307630 - symbol:Celf4 "CUGBP, Elav-like family membe... 262 2.0e-43 2
UNIPROTKB|E1BIM7 - symbol:LOC100851458 "Uncharacterized p... 276 2.5e-43 2
UNIPROTKB|B4DIB6 - symbol:CELF2 "cDNA FLJ51739, highly si... 276 4.0e-43 2
UNIPROTKB|A6H776 - symbol:BRUNOL4 "Uncharacterized protei... 445 5.2e-42 1
UNIPROTKB|Q4R535 - symbol:CELF4 "CUGBP Elav-like family m... 444 6.6e-42 1
UNIPROTKB|Q6K271 - symbol:P0415D04.46-1 "FCA" species:399... 409 1.5e-41 2
UNIPROTKB|Q6WQT6 - symbol:Q6WQT6 "Flowering time control ... 409 1.5e-41 2
UNIPROTKB|Q9BZC1 - symbol:CELF4 "CUGBP Elav-like family m... 422 1.4e-39 1
UNIPROTKB|Q5NVC8 - symbol:CELF4 "CUGBP Elav-like family m... 422 1.4e-39 1
UNIPROTKB|F1SAI1 - symbol:CELF4 "Uncharacterized protein"... 232 2.3e-36 2
UNIPROTKB|B3KWE6 - symbol:BRUNOL6 "cDNA FLJ42868 fis, clo... 391 2.7e-36 1
RGD|1565016 - symbol:Celf5 "CUGBP, Elav-like family membe... 391 2.7e-36 1
UNIPROTKB|F1SID9 - symbol:CELF1 "Uncharacterized protein"... 266 9.0e-34 2
UNIPROTKB|H9L0T2 - symbol:H9L0T2 "Uncharacterized protein... 335 2.3e-30 1
UNIPROTKB|A1L544 - symbol:TNRC4 "Trinucleotide repeat con... 307 2.2e-27 1
UNIPROTKB|Q0V9L3 - symbol:celf4 "CUGBP Elav-like family m... 198 1.1e-26 3
UNIPROTKB|F1RUN0 - symbol:CELF2 "Uncharacterized protein"... 276 4.2e-24 1
UNIPROTKB|Q3ZCE2 - symbol:ELAVL1 "ELAV (Embryonic lethal,... 220 5.4e-23 2
UNIPROTKB|D3K5N7 - symbol:ELAVL1 "ELAV (Embryonic lethal,... 214 3.6e-22 2
UNIPROTKB|B4DQL3 - symbol:CELF3 "CUGBP Elav-like family m... 258 3.7e-22 1
UNIPROTKB|K7EJD7 - symbol:CELF4 "CUGBP Elav-like family m... 258 3.7e-22 1
UNIPROTKB|Q15717 - symbol:ELAVL1 "ELAV-like protein 1" sp... 214 4.5e-22 2
UNIPROTKB|F1M3I9 - symbol:Brunol4 "Protein Brunol4" speci... 213 6.1e-22 2
UNIPROTKB|F1PSC4 - symbol:ELAVL1 "Uncharacterized protein... 214 6.8e-22 2
UNIPROTKB|F1N9I5 - symbol:ELAVL1 "Uncharacterized protein... 212 9.1e-22 2
UNIPROTKB|F1P311 - symbol:CELF1 "CUGBP Elav-like family m... 199 1.1e-21 2
UNIPROTKB|B4DVB8 - symbol:ELAVL1 "ELAV-like protein 1" sp... 214 1.4e-21 2
GENEDB_PFALCIPARUM|MAL8P1.40 - symbol:MAL8P1.40 "RNA-bind... 174 1.7e-21 2
UNIPROTKB|Q8IB66 - symbol:MAL8P1.40 "RNA binding protein,... 174 1.7e-21 2
MGI|MGI:1100851 - symbol:Elavl1 "ELAV (embryonic lethal, ... 210 1.8e-21 2
RGD|1308649 - symbol:Elavl1 "ELAV (embryonic lethal, abno... 210 1.8e-21 2
ZFIN|ZDB-GENE-980526-76 - symbol:elavl3 "ELAV (embryonic ... 200 1.9e-21 2
UNIPROTKB|F1P022 - symbol:CELF2 "CUGBP Elav-like family m... 198 2.2e-21 2
TAIR|locus:2065190 - symbol:AT2G47310 species:3702 "Arabi... 266 5.6e-21 1
UNIPROTKB|Q5U259 - symbol:elavl1-b "ELAV-like protein 1-B... 204 1.3e-20 2
MGI|MGI:109157 - symbol:Elavl3 "ELAV (embryonic lethal, a... 202 1.8e-20 2
RGD|628892 - symbol:Elavl3 "ELAV (embryonic lethal, abnor... 202 1.8e-20 2
UNIPROTKB|Q12926 - symbol:ELAVL2 "ELAV-like protein 2" sp... 197 2.4e-20 2
MGI|MGI:1100887 - symbol:Elavl2 "ELAV (embryonic lethal, ... 197 2.5e-20 2
UNIPROTKB|K7EQ97 - symbol:CELF4 "CUGBP Elav-like family m... 242 2.9e-20 1
WARNING: Descriptions of 781 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2139340 [details] [associations]
symbol:RBP-DR1 "RNA-binding protein-defense related 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0009626 "plant-type
hypersensitive response" evidence=IMP] [GO:0080151 "positive
regulation of salicylic acid mediated signaling pathway"
evidence=IMP] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529 GO:GO:0009626
KO:K13207 eggNOG:NOG251494 OMA:SAMESIN HSSP:Q60900 GO:GO:0080151
EMBL:AY084669 EMBL:AK316961 IPI:IPI00541126 RefSeq:NP_567249.1
UniGene:At.28541 ProteinModelPortal:Q8LFS6 SMR:Q8LFS6 STRING:Q8LFS6
PaxDb:Q8LFS6 PRIDE:Q8LFS6 EnsemblPlants:AT4G03110.1 GeneID:828090
KEGG:ath:AT4G03110 TAIR:At4g03110 InParanoid:Q8LFS6
PhylomeDB:Q8LFS6 ProtClustDB:CLSN2689309 Genevestigator:Q8LFS6
Uniprot:Q8LFS6
Length = 441
Score = 1419 (504.6 bits), Expect = 3.2e-145, P = 3.2e-145
Identities = 280/424 (66%), Positives = 325/424 (76%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
VKLFVGQ+PKHM+E+QLL +F+EFA+VDEVNIIKDK TRASRGCCF++CPSR+EADK VN
Sbjct: 18 VKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVN 77
Query: 75 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 134
ACHNKKTLPGA+S LQVKYADGELERLEHKLF+GMLPKNVSEAEV +LFS YGTIKDLQI
Sbjct: 78 ACHNKKTLPGANSLLQVKYADGELERLEHKLFVGMLPKNVSEAEVQSLFSKYGTIKDLQI 137
Query: 135 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKEXXXXXXXX 194
LRG+QQTSKGCAFLKYETKEQA++A+E+INGKHKMEGS+VPLVVKWADTE+E
Sbjct: 138 LRGAQQTSKGCAFLKYETKEQAVSAMESINGKHKMEGSTVPLVVKWADTERERHTRRLQK 197
Query: 195 XXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYGY-QASGSYGLMQYRLPPMQNQPGFHG 253
L N D +PSLFGALPMGY PPYNGYGY Q G+YG Y LPP+QNQ F
Sbjct: 198 AQSHIARLGNGDPTNPSLFGALPMGYVPPYNGYGYHQPPGTYG---YMLPPIQNQAAFSN 254
Query: 254 IIPPVNQGN--AMRGASPD-LSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLG 310
+I NQGN A++G SPD + + RN+ MPP ++GSGYPA+ G +P YP G++
Sbjct: 255 MIAQPNQGNNNALQGTSPDSVPPRLARRNFPMPPGNYMGSGYPAMRGHPFPFAYPRGIVS 314
Query: 311 HRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQEFGDQELGNAF 370
RPL++SPGS+SP + S P Q EGP GANLFIY+IP+EFGDQEL AF
Sbjct: 315 PRPLSSSPGSISPGM--STPLGIGLSSVV---QTEGPEGANLFIYNIPREFGDQELAAAF 369
Query: 371 QAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRDNK 430
Q+FG VLSAKVFVDKATGVSKCFGFVSY+S A+AQNAI MMNG RD+
Sbjct: 370 QSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAIDMMNGRHLGGKKLKVQLKRDSN 429
Query: 431 QNKP 434
+P
Sbjct: 430 NGQP 433
>TAIR|locus:2825067 [details] [associations]
symbol:BRN2 "Bruno-like 2" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA;ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13207 IPI:IPI00516617 RefSeq:NP_973752.1
UniGene:At.42544 ProteinModelPortal:F4I0X0 SMR:F4I0X0 PRIDE:F4I0X0
EnsemblPlants:AT1G03457.2 GeneID:839497 KEGG:ath:AT1G03457
OMA:MENEERV Uniprot:F4I0X0
Length = 438
Score = 1246 (443.7 bits), Expect = 6.8e-127, P = 6.8e-127
Identities = 259/433 (59%), Positives = 307/433 (70%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
RVKLFVGQVPKHMTE QLL +F+EF++V+EVNIIK+KTTRA RGCCF+ CP+R++ADK +
Sbjct: 11 RVKLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVI 70
Query: 74 NACHNKKTLPGASSPLQVKYADGELERL---------EHKLFIGMLPKNVSEAEVSALFS 124
N+ HNKKTLPGASSPLQVKYADGELERL EHKLF+GMLPKNVSE EV +LFS
Sbjct: 71 NSFHNKKTLPGASSPLQVKYADGELERLDVLDCSCNPEHKLFVGMLPKNVSETEVQSLFS 130
Query: 125 IYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 184
YGTIKDLQILRGS QTSKGC FLKYE+KEQA+AA+EA+NG+H MEG++VPL+VKWADTE
Sbjct: 131 EYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEALNGRHIMEGANVPLIVKWADTE 190
Query: 185 KEXXXXXXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPP 244
KE + L D Q+PS+FGALPM Y PPYNGYGY G+YG Y LPP
Sbjct: 191 KERQARRLLKVQSHVSRL---DPQNPSMFGALPMSYVPPYNGYGYHVPGTYG---YMLPP 244
Query: 245 MQNQPGFHGIIPPVNQGN--AMRGASPDLSSNMGPRNYAMPPSGF-VGSGYPAVPGLQYP 301
+Q Q FH +I P NQGN A++G + L+ ++ PR P F G GLQYP
Sbjct: 245 IQTQHAFHNVISP-NQGNGRALQGTA--LTESVPPR--LAPRRNFPTALGNYGYHGLQYP 299
Query: 302 MPYPGGMLGHR-PLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQE 360
M +P GM+ R PL +VSP ++N+ Q EGP GANLFIY+IP+E
Sbjct: 300 MAFPRGMIPPRLPLT----TVSPGISNNG------TSIPSSLQTEGPAGANLFIYNIPRE 349
Query: 361 FGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXX 420
F DQEL FQ FG+VLSAKVFVDKATG+SKCFGF+SY+S A+AQNAI MNGC
Sbjct: 350 FEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAINTMNGCQLSGKK 409
Query: 421 XXXXXXRDNKQNK 433
RDN Q +
Sbjct: 410 LKVQLKRDNGQQQ 422
>FB|FBgn0262475 [details] [associations]
symbol:bru-2 "bruno-2" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=ISA] [GO:0003723 "RNA binding" evidence=ISA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014134 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00560000076837
RefSeq:NP_001036356.1 UniGene:Dm.412 ProteinModelPortal:Q0E8R3
SMR:Q0E8R3 PRIDE:Q0E8R3 EnsemblMetazoa:FBtr0304856
EnsemblMetazoa:FBtr0332233 GeneID:250811 KEGG:dme:Dmel_CG43065
UCSC:CG31761-RE CTD:250811 FlyBase:FBgn0262475 OMA:AHVANGN
PhylomeDB:Q0E8R3 GenomeRNAi:250811 NextBio:843510 Bgee:Q0E8R3
Uniprot:Q0E8R3
Length = 893
Score = 445 (161.7 bits), Expect = 9.2e-66, Sum P(2) = 9.2e-66
Identities = 114/314 (36%), Positives = 168/314 (53%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
+K+FVGQ+PK E +L MF++F V +N+++DK T SRGCCFV +R+ A +A +
Sbjct: 295 IKMFVGQIPKTWDETRLRQMFEQFGPVHTLNVLRDKVTSISRGCCFVTYYTRKAALRAQD 354
Query: 75 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 134
A HN KTL G P+Q+K AD E R E KLF+GML K +EA+V LF+ +GTI++ +
Sbjct: 355 ALHNIKTLDGMHHPIQMKPADSE-NRNERKLFVGMLNKKYTEADVRQLFTGHGTIEECTV 413
Query: 135 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKEXXXXXXXX 194
LR SKGCAF+ + TK+ A+ A++A++ MEG S PLVVK+ADT+KE
Sbjct: 414 LRDQAGQSKGCAFVTFATKQNAIGAIKALHQSQTMEGCSAPLVVKFADTQKEKDQKKMQQ 473
Query: 195 XXXXXN-NLPN---ADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPG 250
N P+ A + P++ A + APP G + + S +P +Q Q G
Sbjct: 474 IHAFCGINTPSGATAGAATPTINAATALIAAPPSAG---RTNPSMAAALAAVPQVQ-QAG 529
Query: 251 FHGIIP----PVNQGNAMRGA-SPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYP 305
P P+N A+ + +P+L + A + ++G+ A LQ
Sbjct: 530 SAATAPTTLVPLNSTTALSASLTPNLLATNAAHQGAAAAAAYLGADPAAAAHLQLYQQLH 589
Query: 306 GGMLGHRPLNNSPG 319
G G P + PG
Sbjct: 590 G--YGLSPAHYLPG 601
Score = 260 (96.6 bits), Expect = 9.2e-66, Sum P(2) = 9.2e-66
Identities = 60/135 (44%), Positives = 71/135 (52%)
Query: 303 PYPGGMLGHRPLNNSP--GSVSPAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQE 360
PY + G L N G+ S V S QIEGP G+NLFIYH+PQE
Sbjct: 764 PYSSSLSG---LTNGAAYGAASQPVTTS--ALQAAAAGVTGKQIEGPDGSNLFIYHLPQE 818
Query: 361 FGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXX 420
F D +L + F FG VLSAKVF+DK T +SKCFGFVSY++P SA AI M+G
Sbjct: 819 FIDTDLASTFLPFGNVLSAKVFIDKQTNLSKCFGFVSYDNPHSANAAIQAMHGFQIGSKR 878
Query: 421 XXXXXXRDNKQNKPY 435
R KPY
Sbjct: 879 LKVQLKRSKDAAKPY 893
Score = 45 (20.9 bits), Expect = 3.3e-20, Sum P(2) = 3.3e-20
Identities = 18/72 (25%), Positives = 27/72 (37%)
Query: 240 YRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQ 299
Y L P PG + PP N + + SP + G ++ + + P + G
Sbjct: 591 YGLSPAHYLPGLNFHHPPENSAHHSQH-SPGIG---GASAASLSAAAATAASNP-LGGAP 645
Query: 300 YPMPYPGGMLGH 311
P P P GH
Sbjct: 646 PPTPTPTSSAGH 657
>DICTYBASE|DDB_G0291486 [details] [associations]
symbol:DDB_G0291486 "putative splicing regulator"
species:44689 "Dictyostelium discoideum" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0291486 EMBL:AAFI02000177
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG251494
RefSeq:XP_635247.1 ProteinModelPortal:Q54EJ3
EnsemblProtists:DDB0233674 GeneID:8628193 KEGG:ddi:DDB_G0291486
InParanoid:Q54EJ3 OMA:PMGNGMN Uniprot:Q54EJ3
Length = 489
Score = 445 (161.7 bits), Expect = 2.6e-65, Sum P(2) = 2.6e-65
Identities = 83/171 (48%), Positives = 118/171 (69%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFVGQ+PK E ++ +F A ++ V++IK+KTT +GC FV PSR+EAD+A+
Sbjct: 4 KLFVGQIPKSFNEEEIKNLFTNIANIESVSLIKNKTTNEPQGCAFVSVPSREEADRAIEQ 63
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 135
HN K G + LQVKYAD E E+L KLF+GMLP++ E ++ LF +G ++D+ IL
Sbjct: 64 LHNSKKFQGVLNNLQVKYADSEQEKLASKLFVGMLPRSYEEEQIRELFEPHGVVEDICIL 123
Query: 136 RGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
RG SKGC F+K++ +E AL+A+ +NG K++GS PLVVK+ADTEK+
Sbjct: 124 RGPNSESKGCGFIKFDNRESALSAIATLNGM-KLDGSPNPLVVKFADTEKD 173
Score = 238 (88.8 bits), Expect = 2.6e-65, Sum P(2) = 2.6e-65
Identities = 78/223 (34%), Positives = 103/223 (46%)
Query: 200 NNLPNADSQHPSLFGALPMGYAPPYNGYGY-QASGSYGLMQYRLPPMQNQPGFHGIIPPV 258
N +P+ DS PSL G P+ Y+ Y Q Y N +G
Sbjct: 247 NFIPSIDSS-PSLLGTPPIIGDGIYDIYSNSQFDNKYNNNGGMGGNGGNNGNMYG--RNF 303
Query: 259 NQGN--AMRGASPDLSSNMGPRNYAMPPSGFVGSGY----PAVPGLQYPMPYPGGMLGHR 312
N GN M G + + +N GP M G +G+G P G+ P GM G+
Sbjct: 304 NNGNNGPMGGMNGNGMNNGGPMGNGMNNGGPMGNGMNNGGPMGNGMNNGGPMGNGMNGNG 363
Query: 313 PLNNSPGSVSPAVANSNPXXXXXXX--XXXXXQIEGPPGANLFIYHIPQEFGDQELGNAF 370
N G N+ Q GP G+NLF+Y+IP F D +L F
Sbjct: 364 MNGNGMGGPMGNGMNNGMGGMNQGGPMGNKKNQSVGPQGSNLFVYNIPNYFSDNDLLGLF 423
Query: 371 QAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 413
Q +G V+SAKV+VDK TGVSK FGFVSY++PASA AI+ ++G
Sbjct: 424 QQYGIVVSAKVYVDKNTGVSKGFGFVSYDNPASANLAISNLHG 466
Score = 129 (50.5 bits), Expect = 3.8e-27, Sum P(2) = 3.8e-27
Identities = 28/85 (32%), Positives = 51/85 (60%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFVG +P+ E Q+ +F+ +V+++ I++ + S+GC F+ +R+ A A+
Sbjct: 92 KLFVGMLPRSYEEEQIRELFEPHGVVEDICILRGPNSE-SKGCGFIKFDNRESALSAIAT 150
Query: 76 CHNKKTLPGASSPLQVKYADGELER 100
+ K L G+ +PL VK+AD E ++
Sbjct: 151 LNGMK-LDGSPNPLVVKFADTEKDK 174
Score = 74 (31.1 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 19/76 (25%), Positives = 38/76 (50%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQI-LRGSQQTSKGCAFLKYETKEQALAALEAI 163
LF+ +P S+ ++ LF YG + ++ + + SKG F+ Y+ A A+ +
Sbjct: 405 LFVYNIPNYFSDNDLLGLFQQYGIVVSAKVYVDKNTGVSKGFGFVSYDNPASANLAISNL 464
Query: 164 NGKHKMEGSSVPLVVK 179
+G+ M G + + +K
Sbjct: 465 HGQ-MMAGKKLKVSLK 479
>ZFIN|ZDB-GENE-000501-1 [details] [associations]
symbol:celf1 "cugbp, Elav-like family member 1"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0045495 "pole plasm"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-000501-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045495
GeneTree:ENSGT00560000076837 EMBL:CR318601 EMBL:BX571680
IPI:IPI00492280 Ensembl:ENSDART00000123170 Uniprot:E7F304
Length = 535
Score = 407 (148.3 bits), Expect = 3.3e-65, Sum P(2) = 3.3e-65
Identities = 103/313 (32%), Positives = 162/313 (51%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRA--SRGCCFVICPSRQEADKA 72
+K+FVGQ+P+ +E QL +F+ + V E+N+++D++ S+GCCFV +R+ A +A
Sbjct: 54 IKMFVGQIPRTWSEDQLRELFEPYGAVYEINVLRDRSQNPPQSKGCCFVTYYTRKSALEA 113
Query: 73 VNACHNKKTLPGASSPLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
NA HN K LPG P+Q+K AD E + KLF+GM+ K +E ++ +FS YG I+
Sbjct: 114 QNALHNMKILPGMHHPIQMKPADSEKNNAVEDRKLFVGMISKKCNENDIRLMFSPYGQIE 173
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKEXXXX 190
+ +ILRG S+GCAF+ + ++ A +A+++++ MEG S P+VVK+ADT+K+
Sbjct: 174 ECRILRGPDGLSRGCAFVTFTARQMAQSAIKSMHQSQTMEGCSSPIVVKFADTQKDKEQK 233
Query: 191 XXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPG 250
NA S +L G +G P Y Q S S G L PM
Sbjct: 234 RIAQQLQQQMQQLNAASMWGNLTGLNSLG--PQYLAL-LQQSASSGNALNNLHPMSGLNA 290
Query: 251 FHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLG 310
+ +A + A+P SS + + P S SG P+ G + G
Sbjct: 291 MQNLAALAAAASATQ-ATPTGSSAL--TTSSSPLSVLTSSGTPS--GQPAQSAWDAYKAG 345
Query: 311 HRPLNNSPGSVSP 323
P +++ SV+P
Sbjct: 346 SSPTSSTSSSVNP 358
Score = 275 (101.9 bits), Expect = 3.3e-65, Sum P(2) = 3.3e-65
Identities = 53/93 (56%), Positives = 62/93 (66%)
Query: 343 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 402
Q EGP GANLFIYH+PQEFGDQ+L F FG V+SAKVF+DK T +SKCFGFVSY++P
Sbjct: 443 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPV 502
Query: 403 SAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 435
S+Q AI MNG R +KPY
Sbjct: 503 SSQAAIQSMNGFQIGMKRLKVQLKRSKNDSKPY 535
>ZFIN|ZDB-GENE-000501-2 [details] [associations]
symbol:celf3a "cugbp, Elav-like family member 3a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000501-2 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
eggNOG:NOG251494 HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837
EMBL:AB032725 EMBL:BX248499 EMBL:BC060923 IPI:IPI00504951
RefSeq:NP_571569.2 UniGene:Dr.8323 ProteinModelPortal:Q9IBD1
SMR:Q9IBD1 Ensembl:ENSDART00000039629 GeneID:57922 KEGG:dre:57922
CTD:57922 OMA:MQHYTAT OrthoDB:EOG4RJG30 NextBio:20891938
Bgee:Q9IBD1 Uniprot:Q9IBD1
Length = 452
Score = 415 (151.1 bits), Expect = 5.4e-65, Sum P(2) = 5.4e-65
Identities = 80/172 (46%), Positives = 120/172 (69%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
+KLF+GQ+P+++ E L +F++F + E+ +IKDK T +GC F+ +R+ A KA N
Sbjct: 7 IKLFIGQIPRNLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAFLTYCARESALKAQN 66
Query: 75 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 134
A H +KTLPG + P+QVK AD E R + KLF+GML K +S+A+V +F +G+I++ +
Sbjct: 67 ALHEQKTLPGMNRPIQVKPADSE-GRGDRKLFVGMLGKQLSDADVRKMFEPFGSIEECTV 125
Query: 135 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
LRG SKGCAF+KY++ +A AA+ A++G + G+S LVVK+ADTEKE
Sbjct: 126 LRGPDGASKGCAFVKYQSNAEAQAAISALHGSRTLPGASSSLVVKFADTEKE 177
Score = 265 (98.3 bits), Expect = 5.4e-65, Sum P(2) = 5.4e-65
Identities = 75/184 (40%), Positives = 93/184 (50%)
Query: 256 PPVNQGNAMRGASPDLSSNMGPRNY-AMPPSGFVGSGYPAVPGLQ-YPMPYPG--GMLGH 311
PPV + AS L +N G Y A P+ + A G+Q Y YP G++G
Sbjct: 283 PPVPAAPNGQSASEALYTN-GVHPYQAQSPA--LDPLQQAYTGMQHYTATYPAAYGLVG- 338
Query: 312 RPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQEFGDQELGNAFQ 371
+P + P V A P Q EGP G N+FIYH+PQEF D E+ F
Sbjct: 339 QPFPHQPTLV--AQQPQQPQQLQ--------QREGPEGCNIFIYHLPQEFTDSEMLQMFL 388
Query: 372 AFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRDNKQ 431
FG V+SAKVFVD+AT SKCFGFVS+++PASAQ AI MNG R
Sbjct: 389 PFGNVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDA 448
Query: 432 NKPY 435
N+PY
Sbjct: 449 NRPY 452
Score = 182 (69.1 bits), Expect = 8.9e-37, Sum P(2) = 8.9e-37
Identities = 38/85 (44%), Positives = 54/85 (63%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFVG + K +++A + MF+ F ++E +++ AS+GC FV S EA A++A
Sbjct: 95 KLFVGMLGKQLSDADVRKMFEPFGSIEECTVLRGPDG-ASKGCAFVKYQSNAEAQAAISA 153
Query: 76 CHNKKTLPGASSPLQVKYADGELER 100
H +TLPGASS L VK+AD E ER
Sbjct: 154 LHGSRTLPGASSSLVVKFADTEKER 178
Score = 76 (31.8 bits), Expect = 6.3e-15, Sum P(2) = 6.3e-15
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQIL--RGSQQTSKGCAFLKYETKEQALAALEA 162
+FI LP+ +++E+ +F +G + ++ R + Q SK F+ ++ A AA++A
Sbjct: 369 IFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQ-SKCFGFVSFDNPASAQAAIQA 427
Query: 163 ING 165
+NG
Sbjct: 428 MNG 430
>UNIPROTKB|F1ND14 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0040018 "positive regulation of multicellular organism growth"
evidence=IEA] [GO:0042835 "BRE binding" evidence=IEA] [GO:0043484
"regulation of RNA splicing" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0006376 "mRNA splice site selection"
evidence=IEA] [GO:0007286 "spermatid development" evidence=IEA]
[GO:0031369 "translation initiation factor binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0040018 GO:GO:0043484 IPI:IPI00854332 GO:GO:0042835
GO:GO:0006376 GeneTree:ENSGT00560000076837 OMA:PTLYNQS
EMBL:AADN02033464 Ensembl:ENSGALT00000013143
Ensembl:ENSGALT00000038511 Uniprot:F1ND14
Length = 485
Score = 376 (137.4 bits), Expect = 9.0e-65, Sum P(3) = 9.0e-65
Identities = 74/176 (42%), Positives = 115/176 (65%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRA--SRGCCFVICPSRQEADKA 72
+K+FVGQVP+ E L +F+++ V E+N+++D++ S+GCCFV +R+ A +A
Sbjct: 16 IKMFVGQVPRSWCEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 75
Query: 73 VNACHNKKTLPGASSPLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
NA HN K LPG P+Q+K AD E + KLFIGM+ K +E ++ +FS +G I+
Sbjct: 76 QNALHNMKILPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCNENDIRVMFSPFGQIE 135
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+ +ILRG S+GCAF+ + T+ A A++A++ MEG S P+VVK+ADT+K+
Sbjct: 136 ECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPIVVKFADTQKD 191
Score = 277 (102.6 bits), Expect = 9.0e-65, Sum P(3) = 9.0e-65
Identities = 54/93 (58%), Positives = 62/93 (66%)
Query: 343 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 402
Q EGP GANLFIYH+PQEFGDQ+L F FG V+SAKVF+DK T +SKCFGFVSY++P
Sbjct: 393 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPV 452
Query: 403 SAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 435
SAQ AI MNG R +KPY
Sbjct: 453 SAQAAIQSMNGFQIGMKRLKVQLKRSKNDSKPY 485
Score = 174 (66.3 bits), Expect = 4.5e-39, Sum P(3) = 4.5e-39
Identities = 48/156 (30%), Positives = 76/156 (48%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLF+G + K E + MF F ++E I++ SRGC FV +R A A+ A
Sbjct: 109 KLFIGMISKKCNENDIRVMFSPFGQIEECRILRGPDG-LSRGCAFVTFTTRAMAQTAIKA 167
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 135
H +T+ G SSP+ VK+AD + ++ E K L + + + +SA S++G + L L
Sbjct: 168 MHQAQTMEGCSSPIVVKFADTQKDK-EQKRIAQQLQQQMQQ--ISAA-SVWGNLAGLNTL 223
Query: 136 RGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEG 171
G Q + L +T + L ++ H M G
Sbjct: 224 -GPQYLA-----LLQQTAAASSGNLNTLSSLHPMGG 253
Score = 37 (18.1 bits), Expect = 9.0e-65, Sum P(3) = 9.0e-65
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 290 SGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSP 323
SG A+ P+ G P ++S SV+P
Sbjct: 277 SGTAALTSSSSPLSVLTSSAGSSPSSSSSSSVNP 310
>UNIPROTKB|Q08E07 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9913
"Bos taurus" [GO:0048026 "positive regulation of mRNA splicing, via
spliceosome" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030317 "sperm motility"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0003723 GO:GO:0030317 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 eggNOG:NOG251494 HOGENOM:HOG000004754
GeneTree:ENSGT00560000076837 EMBL:BC123480 IPI:IPI00690976
RefSeq:NP_001070313.1 UniGene:Bt.18201 ProteinModelPortal:Q08E07
SMR:Q08E07 PRIDE:Q08E07 Ensembl:ENSBTAT00000033848 GeneID:513347
KEGG:bta:513347 CTD:11189 InParanoid:Q08E07 OMA:HSAYLNP
NextBio:20870823 ArrayExpress:Q08E07 GO:GO:0000381 Uniprot:Q08E07
Length = 461
Score = 404 (147.3 bits), Expect = 2.3e-64, Sum P(2) = 2.3e-64
Identities = 78/172 (45%), Positives = 114/172 (66%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
+KLFVGQ+P+H+ E L +F++F + E+ +IKDK T +GC F+ +R A KA +
Sbjct: 7 IKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQS 66
Query: 75 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 134
A H +KTLPG + P+QVK AD E + KLF+GML K ++ +V +F +GTI + +
Sbjct: 67 ALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTV 126
Query: 135 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
LRG TSKGCAF+K++T +A AA+ ++ + G+S LVVK+ADTEKE
Sbjct: 127 LRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKE 178
Score = 270 (100.1 bits), Expect = 2.3e-64, Sum P(2) = 2.3e-64
Identities = 71/187 (37%), Positives = 87/187 (46%)
Query: 250 GFHGIIPPVNQGNAMRGASPDLSSNMGPRNY-AMPPSGFVGSGYPAVPGLQYPMPYPGGM 308
G +G P Q +PD G Y A P+ V A G+Q+ YP
Sbjct: 278 GVNGYSPVPTQPTGQ--PAPDALYPNGVHPYPAQSPAAPVDPLQQAYAGMQHYTAYPAAY 335
Query: 309 LGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQEFGDQELGN 368
P P ++ A P Q EGP G N+FIYH+PQEF D E+
Sbjct: 336 SLVAPAFPQPPALV-AQQPPPPPQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQ 394
Query: 369 AFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRD 428
F FG V+SAKVFVD+AT SKCFGFVS+++PASAQ AI MNG R
Sbjct: 395 MFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRP 454
Query: 429 NKQNKPY 435
N+PY
Sbjct: 455 KDANRPY 461
Score = 179 (68.1 bits), Expect = 3.5e-37, Sum P(2) = 3.5e-37
Identities = 37/85 (43%), Positives = 51/85 (60%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFVG + K T+ + MF+ F +DE +++ S+GC FV + EA A+N
Sbjct: 96 KLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDG-TSKGCAFVKFQTHAEAQAAINT 154
Query: 76 CHNKKTLPGASSPLQVKYADGELER 100
H+ +TLPGASS L VK+AD E ER
Sbjct: 155 LHSSRTLPGASSSLVVKFADTEKER 179
Score = 76 (31.8 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQIL--RGSQQTSKGCAFLKYETKEQALAALEA 162
+FI LP+ +++E+ +F +G + ++ R + Q SK F+ ++ A AA++A
Sbjct: 378 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQ-SKCFGFVSFDNPASAQAAIQA 436
Query: 163 ING 165
+NG
Sbjct: 437 MNG 439
>MGI|MGI:1926034 [details] [associations]
symbol:Celf3 "CUGBP, Elav-like family member 3"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0008380 "RNA
splicing" evidence=ISO] [GO:0030317 "sperm motility" evidence=IMP]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1926034 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0030317
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
eggNOG:NOG251494 HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837
CTD:11189 OMA:HSAYLNP GO:GO:0000381 OrthoDB:EOG4RJG30 EMBL:AY165052
EMBL:BC057553 IPI:IPI00461847 IPI:IPI00854025 RefSeq:NP_766022.1
UniGene:Mm.44292 ProteinModelPortal:Q8CIN6 SMR:Q8CIN6 STRING:Q8CIN6
PhosphoSite:Q8CIN6 PaxDb:Q8CIN6 PRIDE:Q8CIN6
Ensembl:ENSMUST00000029784 GeneID:78784 KEGG:mmu:78784
UCSC:uc008qgl.1 UCSC:uc008qgm.1 InParanoid:Q8CIN6 NextBio:349492
Bgee:Q8CIN6 CleanEx:MM_TNRC4 Genevestigator:Q8CIN6 Uniprot:Q8CIN6
Length = 465
Score = 403 (146.9 bits), Expect = 1.3e-63, Sum P(2) = 1.3e-63
Identities = 79/172 (45%), Positives = 115/172 (66%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
+KLFVGQ+P+H+ E L +F++F + E+ +IKDK T +GC F+ +R A KA +
Sbjct: 7 IKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQS 66
Query: 75 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 134
A H +KTLPG + P+QVK AD E R + KLF+GML K ++ +V +F +GTI + +
Sbjct: 67 ALHEQKTLPGMNRPIQVKPADSE-SRGDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTV 125
Query: 135 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
LRG TSKGCAF+K++T +A AA+ ++ + G+S LVVK+ADTEKE
Sbjct: 126 LRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKE 177
Score = 264 (98.0 bits), Expect = 1.3e-63, Sum P(2) = 1.3e-63
Identities = 71/191 (37%), Positives = 86/191 (45%)
Query: 250 GFHGIIPPVNQGNAMRGASPDLSSNMGPRNY-AMPPSGFVGSGYPAVPGLQ-YPMPYPGG 307
G +G P Q +PD G Y A P+ V A G+Q Y YP
Sbjct: 277 GVNGYSPVPTQPTGQ--PAPDALYPNGVHPYPAQSPAAPVDPLQQAYAGMQHYTAAYPAA 334
Query: 308 MLGHRPLNNSPGSV---SPAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQEFGDQ 364
P P ++ P Q EGP G N+FIYH+PQEF D
Sbjct: 335 YSLVAPAFPQPPALVAQQPPPPPQQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDS 394
Query: 365 ELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXXXXXX 424
E+ F FG V+SAKVFVD+AT SKCFGFVS+++PASAQ AI MNG
Sbjct: 395 EILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQ 454
Query: 425 XXRDNKQNKPY 435
R N+PY
Sbjct: 455 LKRPKDANRPY 465
Score = 179 (68.1 bits), Expect = 3.6e-36, Sum P(2) = 3.6e-36
Identities = 37/85 (43%), Positives = 51/85 (60%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFVG + K T+ + MF+ F +DE +++ S+GC FV + EA A+N
Sbjct: 95 KLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDG-TSKGCAFVKFQTHAEAQAAINT 153
Query: 76 CHNKKTLPGASSPLQVKYADGELER 100
H+ +TLPGASS L VK+AD E ER
Sbjct: 154 LHSSRTLPGASSSLVVKFADTEKER 178
Score = 76 (31.8 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQIL--RGSQQTSKGCAFLKYETKEQALAALEA 162
+FI LP+ +++E+ +F +G + ++ R + Q SK F+ ++ A AA++A
Sbjct: 382 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQ-SKCFGFVSFDNPASAQAAIQA 440
Query: 163 ING 165
+NG
Sbjct: 441 MNG 443
>ZFIN|ZDB-GENE-040718-300 [details] [associations]
symbol:celf4 "CUGBP, Elav-like family member 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040718-300 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026 eggNOG:NOG251494
HOGENOM:HOG000004754 OrthoDB:EOG4RJG30 EMBL:BC076238
IPI:IPI00491989 RefSeq:NP_001002562.1 UniGene:Dr.81398
ProteinModelPortal:Q6DGV1 SMR:Q6DGV1 GeneID:436835 KEGG:dre:436835
CTD:56853 InParanoid:Q6DGV1 NextBio:20831267 ArrayExpress:Q6DGV1
Bgee:Q6DGV1 Uniprot:Q6DGV1
Length = 520
Score = 405 (147.6 bits), Expect = 1.6e-63, Sum P(2) = 1.6e-63
Identities = 79/172 (45%), Positives = 114/172 (66%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
+KLF+GQ+P+++ E L +F+EF + E+ ++KD+ T +GC F+ +R+ A KA
Sbjct: 47 IKLFIGQIPRNLDEKDLRPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCARESALKAQT 106
Query: 75 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 134
A H +KTLPG + P+QVK AD E + KLF+GML K E +V LF +G+I++ I
Sbjct: 107 ALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLNKQQCEDDVRRLFESFGSIEECTI 166
Query: 135 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
LRG SKGCAF+KY T +A AA+ A++G M G+S LVVK+ADT+KE
Sbjct: 167 LRGPDGNSKGCAFVKYSTHAEAQAAISALHGSQTMPGASSSLVVKFADTDKE 218
Score = 261 (96.9 bits), Expect = 1.6e-63, Sum P(2) = 1.6e-63
Identities = 52/93 (55%), Positives = 60/93 (64%)
Query: 343 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 402
Q EGP G NLFIYH+PQEFGD EL F FG V+S+KVFVD+AT SKCFGFVS+++P
Sbjct: 428 QREGPEGCNLFIYHLPQEFGDGELMQMFLPFGNVISSKVFVDRATNQSKCFGFVSFDNPG 487
Query: 403 SAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 435
SAQ AI MNG R N+PY
Sbjct: 488 SAQAAIQSMNGFQIGMKRLKVQLKRPKDANRPY 520
Score = 161 (61.7 bits), Expect = 1.8e-33, Sum P(2) = 1.8e-33
Identities = 34/85 (40%), Positives = 50/85 (58%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFVG + K E + +F+ F ++E I++ S+GC FV + EA A++A
Sbjct: 136 KLFVGMLNKQQCEDDVRRLFESFGSIEECTILRGPDGN-SKGCAFVKYSTHAEAQAAISA 194
Query: 76 CHNKKTLPGASSPLQVKYADGELER 100
H +T+PGASS L VK+AD + ER
Sbjct: 195 LHGSQTMPGASSSLVVKFADTDKER 219
Score = 72 (30.4 bits), Expect = 7.4e-12, Sum P(2) = 7.4e-12
Identities = 18/63 (28%), Positives = 34/63 (53%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQIL--RGSQQTSKGCAFLKYETKEQALAALEA 162
LFI LP+ + E+ +F +G + ++ R + Q SK F+ ++ A AA+++
Sbjct: 437 LFIYHLPQEFGDGELMQMFLPFGNVISSKVFVDRATNQ-SKCFGFVSFDNPGSAQAAIQS 495
Query: 163 ING 165
+NG
Sbjct: 496 MNG 498
>UNIPROTKB|Q7ZWM3 [details] [associations]
symbol:tnrc4-b "CUGBP Elav-like family member 3-B"
species:8355 "Xenopus laevis" [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646
KO:K13207 GO:GO:0048026 EMBL:BC046942 RefSeq:NP_001080695.1
UniGene:Xl.12160 ProteinModelPortal:Q7ZWM3 SMR:Q7ZWM3 GeneID:380387
KEGG:xla:380387 CTD:380387 Xenbase:XB-GENE-5796640 Uniprot:Q7ZWM3
Length = 462
Score = 405 (147.6 bits), Expect = 2.0e-63, Sum P(2) = 2.0e-63
Identities = 77/172 (44%), Positives = 116/172 (67%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
+KLF+GQ+P+++ E L +F++F + E+ +IKDK T +GC F+ +R+ A KA +
Sbjct: 7 IKLFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESALKAQS 66
Query: 75 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 134
A H +KTLPG + P+QVK AD E + KLF+GML K ++ +V +F +G I + +
Sbjct: 67 ALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRRMFETFGNIDECTV 126
Query: 135 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
LRG TSKGCAF+K++T +A AA+ A++G + G+S LVVK+ADTEKE
Sbjct: 127 LRGPDGTSKGCAFVKFQTHTEAQAAINALHGSRTLPGASSSLVVKFADTEKE 178
Score = 260 (96.6 bits), Expect = 2.0e-63, Sum P(2) = 2.0e-63
Identities = 56/117 (47%), Positives = 65/117 (55%)
Query: 319 GSVSPAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLS 378
G VSPA P Q EGP G N+FIYH+PQEF D E+ F FG V+S
Sbjct: 347 GLVSPAFTQP-PAILTQQPPQQQQQREGPEGCNIFIYHLPQEFTDSEILQMFLPFGNVIS 405
Query: 379 AKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 435
AKVFVD+AT SKCFGFVS+++P SAQ AI MNG R N+PY
Sbjct: 406 AKVFVDRATNQSKCFGFVSFDNPGSAQAAIQSMNGFQIGMKRLKVQLKRPKDANRPY 462
Score = 180 (68.4 bits), Expect = 1.1e-35, Sum P(2) = 1.1e-35
Identities = 38/85 (44%), Positives = 51/85 (60%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFVG + K T+ + MF+ F +DE +++ S+GC FV + EA A+NA
Sbjct: 96 KLFVGMLGKQQTDEDVRRMFETFGNIDECTVLRGPDG-TSKGCAFVKFQTHTEAQAAINA 154
Query: 76 CHNKKTLPGASSPLQVKYADGELER 100
H +TLPGASS L VK+AD E ER
Sbjct: 155 LHGSRTLPGASSSLVVKFADTEKER 179
Score = 74 (31.1 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 17/63 (26%), Positives = 36/63 (57%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQIL--RGSQQTSKGCAFLKYETKEQALAALEA 162
+FI LP+ +++E+ +F +G + ++ R + Q SK F+ ++ A AA+++
Sbjct: 379 IFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQ-SKCFGFVSFDNPGSAQAAIQS 437
Query: 163 ING 165
+NG
Sbjct: 438 MNG 440
>UNIPROTKB|Q5SZQ8 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0030317 "sperm
motility" evidence=IEA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=NAS] [GO:0003729 "mRNA binding" evidence=NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0003723 "RNA binding"
evidence=IMP] [GO:0008380 "RNA splicing" evidence=IMP] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0048026
"positive regulation of mRNA splicing, via spliceosome"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0030317 GO:GO:0000398 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 eggNOG:NOG251494 CTD:11189 GO:GO:0000381
OrthoDB:EOG4RJG30 EMBL:AF329264 EMBL:AY165003 EMBL:AL589765
EMBL:BC052491 EMBL:BC068008 EMBL:BC104758 EMBL:BC143226 EMBL:U80746
EMBL:AF284423 IPI:IPI00852836 IPI:IPI00852895 IPI:IPI00852999
RefSeq:NP_009116.3 UniGene:Hs.26047 PDB:2DNO PDBsum:2DNO
ProteinModelPortal:Q5SZQ8 SMR:Q5SZQ8 IntAct:Q5SZQ8
MINT:MINT-4866187 STRING:Q5SZQ8 PhosphoSite:Q5SZQ8 DMDM:74756184
PRIDE:Q5SZQ8 Ensembl:ENST00000290583 GeneID:11189 KEGG:hsa:11189
UCSC:uc001eyr.3 UCSC:uc001eys.2 UCSC:uc009wmx.2
GeneCards:GC01M151674 HGNC:HGNC:11967 HPA:HPA006292 MIM:612678
neXtProt:NX_Q5SZQ8 PharmGKB:PA36654 PhylomeDB:Q5SZQ8
EvolutionaryTrace:Q5SZQ8 GenomeRNAi:11189 NextBio:42591
ArrayExpress:Q5SZQ8 Bgee:Q5SZQ8 CleanEx:HS_TNRC4
Genevestigator:Q5SZQ8 Uniprot:Q5SZQ8
Length = 465
Score = 404 (147.3 bits), Expect = 2.0e-63, Sum P(2) = 2.0e-63
Identities = 78/172 (45%), Positives = 114/172 (66%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
+KLFVGQ+P+H+ E L +F++F + E+ +IKDK T +GC F+ +R A KA +
Sbjct: 7 IKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQS 66
Query: 75 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 134
A H +KTLPG + P+QVK AD E + KLF+GML K ++ +V +F +GTI + +
Sbjct: 67 ALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTV 126
Query: 135 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
LRG TSKGCAF+K++T +A AA+ ++ + G+S LVVK+ADTEKE
Sbjct: 127 LRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKE 178
Score = 261 (96.9 bits), Expect = 2.0e-63, Sum P(2) = 2.0e-63
Identities = 71/190 (37%), Positives = 86/190 (45%)
Query: 250 GFHGIIPPVNQGNAMRGASPDLSSNMGPRNY-AMPPSGFVGSGYPAVPGLQ-YPMPYPGG 307
G +G P Q +PD G Y A P+ V A G+Q Y YP
Sbjct: 278 GVNGYSPVPTQPTGQ--PAPDALYPNGVHPYPAQSPAAPVDPLQQAYAGMQHYTAAYPAA 335
Query: 308 MLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQI--EGPPGANLFIYHIPQEFGDQE 365
P P ++ P Q EGP G N+FIYH+PQEF D E
Sbjct: 336 YSLVAPAFPQPPALVAQQPPPPPQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSE 395
Query: 366 LGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXXXXXXX 425
+ F FG V+SAKVFVD+AT SKCFGFVS+++PASAQ AI MNG
Sbjct: 396 ILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQL 455
Query: 426 XRDNKQNKPY 435
R N+PY
Sbjct: 456 KRPKDANRPY 465
Score = 179 (68.1 bits), Expect = 1.0e-35, Sum P(2) = 1.0e-35
Identities = 37/85 (43%), Positives = 51/85 (60%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFVG + K T+ + MF+ F +DE +++ S+GC FV + EA A+N
Sbjct: 96 KLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDG-TSKGCAFVKFQTHAEAQAAINT 154
Query: 76 CHNKKTLPGASSPLQVKYADGELER 100
H+ +TLPGASS L VK+AD E ER
Sbjct: 155 LHSSRTLPGASSSLVVKFADTEKER 179
Score = 76 (31.8 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQIL--RGSQQTSKGCAFLKYETKEQALAALEA 162
+FI LP+ +++E+ +F +G + ++ R + Q SK F+ ++ A AA++A
Sbjct: 382 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQ-SKCFGFVSFDNPASAQAAIQA 440
Query: 163 ING 165
+NG
Sbjct: 441 MNG 443
>UNIPROTKB|Q91579 [details] [associations]
symbol:tnrc4-a "CUGBP Elav-like family member 3-A"
species:8355 "Xenopus laevis" [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:U16800 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BC057704 EMBL:BC072134
RefSeq:NP_001079936.1 UniGene:Xl.986 HSSP:Q92879
ProteinModelPortal:Q91579 SMR:Q91579 GeneID:379627 KEGG:xla:379627
CTD:379627 Xenbase:XB-GENE-6255196 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 Uniprot:Q91579
Length = 462
Score = 403 (146.9 bits), Expect = 4.2e-63, Sum P(2) = 4.2e-63
Identities = 77/172 (44%), Positives = 116/172 (67%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
+KLF+GQ+P+++ E L +F++F + E+ +IKDK T +GC F+ +R+ A KA +
Sbjct: 7 IKLFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESALKAQS 66
Query: 75 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 134
A H +KTLPG + P+QVK AD E + KLF+GML K ++ +V +F +G I + +
Sbjct: 67 ALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRRMFEPFGNIDECTV 126
Query: 135 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
LRG TSKGCAF+K++T +A AA+ A++G + G+S LVVK+ADTEKE
Sbjct: 127 LRGPDGTSKGCAFVKFQTHTEAQAAINALHGSRTLPGASSSLVVKFADTEKE 178
Score = 259 (96.2 bits), Expect = 4.2e-63, Sum P(2) = 4.2e-63
Identities = 56/117 (47%), Positives = 65/117 (55%)
Query: 319 GSVSPAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLS 378
G VSPA P Q EGP G N+FIYH+PQEF D E+ F FG V+S
Sbjct: 347 GLVSPAFTQP-PAILQQQPPQQQQQREGPEGCNIFIYHLPQEFTDSEILQMFLPFGNVIS 405
Query: 379 AKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 435
AKVFVD+AT SKCFGFVS+++P SAQ AI MNG R N+PY
Sbjct: 406 AKVFVDRATNQSKCFGFVSFDNPGSAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY 462
Score = 180 (68.4 bits), Expect = 1.5e-35, Sum P(2) = 1.5e-35
Identities = 38/85 (44%), Positives = 51/85 (60%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFVG + K T+ + MF+ F +DE +++ S+GC FV + EA A+NA
Sbjct: 96 KLFVGMLGKQQTDEDVRRMFEPFGNIDECTVLRGPDG-TSKGCAFVKFQTHTEAQAAINA 154
Query: 76 CHNKKTLPGASSPLQVKYADGELER 100
H +TLPGASS L VK+AD E ER
Sbjct: 155 LHGSRTLPGASSSLVVKFADTEKER 179
Score = 77 (32.2 bits), Expect = 9.4e-15, Sum P(2) = 9.4e-15
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQIL--RGSQQTSKGCAFLKYETKEQALAALEA 162
+FI LP+ +++E+ +F +G + ++ R + Q SK F+ ++ A AA++A
Sbjct: 379 IFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQ-SKCFGFVSFDNPGSAQAAIQA 437
Query: 163 ING 165
+NG
Sbjct: 438 MNG 440
>UNIPROTKB|Q5SZQ7 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH471121
HOVERGEN:HBG107646 KO:K13207 HOGENOM:HOG000004754 CTD:11189
EMBL:AL589765 UniGene:Hs.26047 PDB:2DNO PDBsum:2DNO GeneID:11189
KEGG:hsa:11189 HGNC:HGNC:11967 PharmGKB:PA36654 GenomeRNAi:11189
NextBio:42591 IPI:IPI00386736 RefSeq:NP_001166120.1 SMR:Q5SZQ7
STRING:Q5SZQ7 Ensembl:ENST00000290585 UCSC:uc009wmy.3
EvolutionaryTrace:Q5SZQ7 Uniprot:Q5SZQ7
Length = 415
Score = 404 (147.3 bits), Expect = 5.4e-63, Sum P(2) = 5.4e-63
Identities = 78/172 (45%), Positives = 114/172 (66%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
+KLFVGQ+P+H+ E L +F++F + E+ +IKDK T +GC F+ +R A KA +
Sbjct: 7 IKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQS 66
Query: 75 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 134
A H +KTLPG + P+QVK AD E + KLF+GML K ++ +V +F +GTI + +
Sbjct: 67 ALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTV 126
Query: 135 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
LRG TSKGCAF+K++T +A AA+ ++ + G+S LVVK+ADTEKE
Sbjct: 127 LRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKE 178
Score = 257 (95.5 bits), Expect = 5.4e-63, Sum P(2) = 5.4e-63
Identities = 51/93 (54%), Positives = 60/93 (64%)
Query: 343 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 402
Q EGP G N+FIYH+PQEF D E+ F FG V+SAKVFVD+AT SKCFGFVS+++PA
Sbjct: 323 QREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPA 382
Query: 403 SAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 435
SAQ AI MNG R N+PY
Sbjct: 383 SAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY 415
Score = 179 (68.1 bits), Expect = 1.3e-35, Sum P(2) = 1.3e-35
Identities = 37/85 (43%), Positives = 51/85 (60%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFVG + K T+ + MF+ F +DE +++ S+GC FV + EA A+N
Sbjct: 96 KLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDG-TSKGCAFVKFQTHAEAQAAINT 154
Query: 76 CHNKKTLPGASSPLQVKYADGELER 100
H+ +TLPGASS L VK+AD E ER
Sbjct: 155 LHSSRTLPGASSSLVVKFADTEKER 179
Score = 76 (31.8 bits), Expect = 9.6e-15, Sum P(2) = 9.6e-15
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQIL--RGSQQTSKGCAFLKYETKEQALAALEA 162
+FI LP+ +++E+ +F +G + ++ R + Q SK F+ ++ A AA++A
Sbjct: 332 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQ-SKCFGFVSFDNPASAQAAIQA 390
Query: 163 ING 165
+NG
Sbjct: 391 MNG 393
>MGI|MGI:1342295 [details] [associations]
symbol:Celf1 "CUGBP, Elav-like family member 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003729 "mRNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IDA;TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0006376 "mRNA splice site
selection" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0007286 "spermatid development" evidence=IMP]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0031369 "translation
initiation factor binding" evidence=IDA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IMP]
[GO:0042835 "BRE binding" evidence=ISO] [GO:0043484 "regulation of
RNA splicing" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1342295
GO:GO:0005634 GO:GO:0005737 GO:GO:0007286 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0043484
EMBL:AL672241 HOVERGEN:HBG107646 KO:K13207 CTD:10658
eggNOG:NOG251494 ChiTaRS:CELF1 GO:GO:0042835 GO:GO:0006376
EMBL:AJ007987 EMBL:AF267535 EMBL:AK135030 EMBL:AK143698
EMBL:AK014492 EMBL:AK156725 EMBL:BC021393 EMBL:AF314172
EMBL:AB050499 EMBL:X61451 IPI:IPI00123205 IPI:IPI00229237
IPI:IPI00229238 IPI:IPI00395213 PIR:S16865 RefSeq:NP_001231820.1
RefSeq:NP_001231832.1 RefSeq:NP_059064.2 RefSeq:NP_941955.1
UniGene:Mm.29495 UniGene:Mm.490161 ProteinModelPortal:P28659
SMR:P28659 STRING:P28659 PhosphoSite:P28659 PaxDb:P28659
PRIDE:P28659 Ensembl:ENSMUST00000005643 Ensembl:ENSMUST00000068726
Ensembl:ENSMUST00000068747 Ensembl:ENSMUST00000111448
Ensembl:ENSMUST00000111449 Ensembl:ENSMUST00000111451
Ensembl:ENSMUST00000111452 Ensembl:ENSMUST00000111455
Ensembl:ENSMUST00000177642 GeneID:13046 KEGG:mmu:13046
UCSC:uc008ktx.1 GeneTree:ENSGT00560000076837 InParanoid:P28659
OMA:PTLYNQS NextBio:282946 Bgee:P28659 CleanEx:MM_CUGBP1
Genevestigator:P28659 GermOnline:ENSMUSG00000005506 GO:GO:0031369
Uniprot:P28659
Length = 486
Score = 380 (138.8 bits), Expect = 8.8e-63, Sum P(2) = 8.8e-63
Identities = 75/176 (42%), Positives = 116/176 (65%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRA--SRGCCFVICPSRQEADKA 72
+K+FVGQVP+ +E L +F+++ V E+NI++D++ S+GCCFV +R+ A +A
Sbjct: 16 IKMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEA 75
Query: 73 VNACHNKKTLPGASSPLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
NA HN K LPG P+Q+K AD E + KLFIGM+ K +E ++ +FS +G I+
Sbjct: 76 QNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIE 135
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+ +ILRG S+GCAF+ + T+ A A++A++ MEG S P+VVK+ADT+K+
Sbjct: 136 ECRILRGPDGLSRGCAFVTFTTRTMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKD 191
Score = 279 (103.3 bits), Expect = 8.8e-63, Sum P(2) = 8.8e-63
Identities = 57/113 (50%), Positives = 66/113 (58%)
Query: 323 PAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVF 382
P + N N Q EGP GANLFIYH+PQEFGDQ+L F FG V+SAKVF
Sbjct: 375 PTLYNQN-LLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVF 433
Query: 383 VDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 435
+DK T +SKCFGFVSY++P SAQ AI MNG R +KPY
Sbjct: 434 IDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSKPY 486
Score = 180 (68.4 bits), Expect = 5.9e-39, Sum P(2) = 5.9e-39
Identities = 48/156 (30%), Positives = 78/156 (50%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLF+G + K TE + MF F ++E I++ SRGC FV +R A A+ A
Sbjct: 109 KLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDG-LSRGCAFVTFTTRTMAQTAIKA 167
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 135
H +T+ G SSP+ VK+AD + ++ E K L + + + +SA S++G + L L
Sbjct: 168 MHQAQTMEGCSSPMVVKFADTQKDK-EQKRMAQQLQQQMQQ--ISAA-SVWGNLAGLNTL 223
Query: 136 RGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEG 171
G Q + +L+ + + L ++ H M G
Sbjct: 224 -GPQYLA---LYLQLLQQTASSGNLNTLSSLHPMGG 255
>RGD|1307721 [details] [associations]
symbol:Celf1 "CUGBP, Elav-like family member 1" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISO;ISS] [GO:0003729 "mRNA binding"
evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0006376 "mRNA splice
site selection" evidence=IEA;ISO] [GO:0007286 "spermatid
development" evidence=IEA;ISO] [GO:0031369 "translation initiation
factor binding" evidence=IEA;ISO] [GO:0040018 "positive regulation
of multicellular organism growth" evidence=IEA;ISO] [GO:0042835
"BRE binding" evidence=IEA;ISO] [GO:0043484 "regulation of RNA
splicing" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1307721
GO:GO:0005634 GO:GO:0005737 GO:GO:0007286 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0003723
GO:GO:0043484 HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 CTD:10658
eggNOG:NOG251494 HOGENOM:HOG000004754 OrthoDB:EOG4N8R4X
GO:GO:0042835 GO:GO:0006376 EMBL:BC098012 IPI:IPI00373642
RefSeq:NP_001020592.1 UniGene:Rn.22432 ProteinModelPortal:Q4QQT3
SMR:Q4QQT3 STRING:Q4QQT3 PhosphoSite:Q4QQT3 PRIDE:Q4QQT3
GeneID:362160 KEGG:rno:362160 UCSC:RGD:1307721 InParanoid:Q4QQT3
NextBio:678844 Genevestigator:Q4QQT3 Uniprot:Q4QQT3
Length = 487
Score = 380 (138.8 bits), Expect = 8.8e-63, Sum P(2) = 8.8e-63
Identities = 75/176 (42%), Positives = 116/176 (65%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRA--SRGCCFVICPSRQEADKA 72
+K+FVGQVP+ +E L +F+++ V E+NI++D++ S+GCCFV +R+ A +A
Sbjct: 16 IKMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEA 75
Query: 73 VNACHNKKTLPGASSPLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
NA HN K LPG P+Q+K AD E + KLFIGM+ K +E ++ +FS +G I+
Sbjct: 76 QNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIE 135
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+ +ILRG S+GCAF+ + T+ A A++A++ MEG S P+VVK+ADT+K+
Sbjct: 136 ECRILRGPDGLSRGCAFVTFTTRTMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKD 191
Score = 279 (103.3 bits), Expect = 8.8e-63, Sum P(2) = 8.8e-63
Identities = 57/113 (50%), Positives = 66/113 (58%)
Query: 323 PAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVF 382
P + N N Q EGP GANLFIYH+PQEFGDQ+L F FG V+SAKVF
Sbjct: 376 PTLYNQN-LLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVF 434
Query: 383 VDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 435
+DK T +SKCFGFVSY++P SAQ AI MNG R +KPY
Sbjct: 435 IDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSKPY 487
Score = 178 (67.7 bits), Expect = 9.8e-39, Sum P(2) = 9.8e-39
Identities = 48/158 (30%), Positives = 78/158 (49%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLF+G + K TE + MF F ++E I++ SRGC FV +R A A+ A
Sbjct: 109 KLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDG-LSRGCAFVTFTTRTMAQTAIKA 167
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 135
H +T+ G SSP+ VK+AD + ++ E K L + + + +SA S++G + L L
Sbjct: 168 MHQAQTMEGCSSPMVVKFADTQKDK-EQKRMAQQLQQQMQQ--ISAA-SVWGNLAGLNTL 223
Query: 136 RGSQQTSKGCAFLKYETKE---QALAALEAINGKHKME 170
G Q + L+ L++L + G + M+
Sbjct: 224 -GPQYLALYLQLLQQTANSGNLNTLSSLHPMGGLNAMQ 260
>UNIPROTKB|Q4QQT3 [details] [associations]
symbol:Celf1 "CUGBP Elav-like family member 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1307721 GO:GO:0005634
GO:GO:0005737 GO:GO:0007286 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0003723 GO:GO:0043484
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 CTD:10658 eggNOG:NOG251494
HOGENOM:HOG000004754 OrthoDB:EOG4N8R4X GO:GO:0042835 GO:GO:0006376
EMBL:BC098012 IPI:IPI00373642 RefSeq:NP_001020592.1
UniGene:Rn.22432 ProteinModelPortal:Q4QQT3 SMR:Q4QQT3 STRING:Q4QQT3
PhosphoSite:Q4QQT3 PRIDE:Q4QQT3 GeneID:362160 KEGG:rno:362160
UCSC:RGD:1307721 InParanoid:Q4QQT3 NextBio:678844
Genevestigator:Q4QQT3 Uniprot:Q4QQT3
Length = 487
Score = 380 (138.8 bits), Expect = 8.8e-63, Sum P(2) = 8.8e-63
Identities = 75/176 (42%), Positives = 116/176 (65%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRA--SRGCCFVICPSRQEADKA 72
+K+FVGQVP+ +E L +F+++ V E+NI++D++ S+GCCFV +R+ A +A
Sbjct: 16 IKMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEA 75
Query: 73 VNACHNKKTLPGASSPLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
NA HN K LPG P+Q+K AD E + KLFIGM+ K +E ++ +FS +G I+
Sbjct: 76 QNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIE 135
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+ +ILRG S+GCAF+ + T+ A A++A++ MEG S P+VVK+ADT+K+
Sbjct: 136 ECRILRGPDGLSRGCAFVTFTTRTMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKD 191
Score = 279 (103.3 bits), Expect = 8.8e-63, Sum P(2) = 8.8e-63
Identities = 57/113 (50%), Positives = 66/113 (58%)
Query: 323 PAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVF 382
P + N N Q EGP GANLFIYH+PQEFGDQ+L F FG V+SAKVF
Sbjct: 376 PTLYNQN-LLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVF 434
Query: 383 VDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 435
+DK T +SKCFGFVSY++P SAQ AI MNG R +KPY
Sbjct: 435 IDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSKPY 487
Score = 178 (67.7 bits), Expect = 9.8e-39, Sum P(2) = 9.8e-39
Identities = 48/158 (30%), Positives = 78/158 (49%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLF+G + K TE + MF F ++E I++ SRGC FV +R A A+ A
Sbjct: 109 KLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDG-LSRGCAFVTFTTRTMAQTAIKA 167
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 135
H +T+ G SSP+ VK+AD + ++ E K L + + + +SA S++G + L L
Sbjct: 168 MHQAQTMEGCSSPMVVKFADTQKDK-EQKRMAQQLQQQMQQ--ISAA-SVWGNLAGLNTL 223
Query: 136 RGSQQTSKGCAFLKYETKE---QALAALEAINGKHKME 170
G Q + L+ L++L + G + M+
Sbjct: 224 -GPQYLALYLQLLQQTANSGNLNTLSSLHPMGGLNAMQ 260
>UNIPROTKB|A7MB95 [details] [associations]
symbol:CUGBP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043484 "regulation of RNA splicing" evidence=IEA]
[GO:0042835 "BRE binding" evidence=IEA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IEA]
[GO:0031369 "translation initiation factor binding" evidence=IEA]
[GO:0007286 "spermatid development" evidence=IEA] [GO:0006376 "mRNA
splice site selection" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007286 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0043484 HOVERGEN:HBG107646
KO:K13207 CTD:10658 eggNOG:NOG251494 HOGENOM:HOG000004754
OrthoDB:EOG4N8R4X GO:GO:0042835 GO:GO:0006376
GeneTree:ENSGT00560000076837 OMA:PTLYNQS EMBL:DAAA02041602
EMBL:DAAA02041603 EMBL:DAAA02041604 EMBL:BC151433 IPI:IPI00824850
RefSeq:NP_001094682.1 UniGene:Bt.16531 SMR:A7MB95 STRING:A7MB95
Ensembl:ENSBTAT00000003274 GeneID:540475 KEGG:bta:540475
InParanoid:A7MB95 NextBio:20878658 Uniprot:A7MB95
Length = 486
Score = 379 (138.5 bits), Expect = 1.1e-62, Sum P(2) = 1.1e-62
Identities = 74/176 (42%), Positives = 116/176 (65%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRA--SRGCCFVICPSRQEADKA 72
+K+FVGQVP+ +E L +F+++ V E+N+++D++ S+GCCFV +R+ A +A
Sbjct: 16 IKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 75
Query: 73 VNACHNKKTLPGASSPLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
NA HN K LPG P+Q+K AD E + KLFIGM+ K +E ++ +FS +G I+
Sbjct: 76 QNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIE 135
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+ +ILRG S+GCAF+ + T+ A A++A++ MEG S P+VVK+ADT+K+
Sbjct: 136 ECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKD 191
Score = 279 (103.3 bits), Expect = 1.1e-62, Sum P(2) = 1.1e-62
Identities = 57/113 (50%), Positives = 66/113 (58%)
Query: 323 PAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVF 382
P + N N Q EGP GANLFIYH+PQEFGDQ+L F FG V+SAKVF
Sbjct: 375 PTLYNQN-LLAQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVF 433
Query: 383 VDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 435
+DK T +SKCFGFVSY++P SAQ AI MNG R +KPY
Sbjct: 434 IDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSKPY 486
Score = 180 (68.4 bits), Expect = 5.9e-39, Sum P(2) = 5.9e-39
Identities = 48/156 (30%), Positives = 78/156 (50%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLF+G + K TE + MF F ++E I++ SRGC FV +R A A+ A
Sbjct: 109 KLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDG-LSRGCAFVTFTTRAMAQTAIKA 167
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 135
H +T+ G SSP+ VK+AD + ++ E K L + + + +SA S++G + L L
Sbjct: 168 MHQAQTMEGCSSPMVVKFADTQKDK-EQKRMAQQLQQQMQQ--ISAA-SVWGNLAGLNTL 223
Query: 136 RGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEG 171
G Q + +L+ + + L ++ H M G
Sbjct: 224 -GPQYLA---LYLQLLQQTASSGNLNTLSSLHPMGG 255
>UNIPROTKB|E2R8F6 [details] [associations]
symbol:CELF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0042835 "BRE binding" evidence=IEA] [GO:0040018
"positive regulation of multicellular organism growth"
evidence=IEA] [GO:0031369 "translation initiation factor binding"
evidence=IEA] [GO:0007286 "spermatid development" evidence=IEA]
[GO:0006376 "mRNA splice site selection" evidence=IEA] [GO:0003729
"mRNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007286 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0043484
GO:GO:0042835 GO:GO:0006376 GeneTree:ENSGT00560000076837
OMA:PTLYNQS EMBL:AAEX03011483 ProteinModelPortal:E2R8F6
Ensembl:ENSCAFT00000013438 Uniprot:E2R8F6
Length = 513
Score = 379 (138.5 bits), Expect = 1.1e-62, Sum P(2) = 1.1e-62
Identities = 74/176 (42%), Positives = 116/176 (65%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRA--SRGCCFVICPSRQEADKA 72
+K+FVGQVP+ +E L +F+++ V E+N+++D++ S+GCCFV +R+ A +A
Sbjct: 43 IKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 102
Query: 73 VNACHNKKTLPGASSPLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
NA HN K LPG P+Q+K AD E + KLFIGM+ K +E ++ +FS +G I+
Sbjct: 103 QNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIE 162
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+ +ILRG S+GCAF+ + T+ A A++A++ MEG S P+VVK+ADT+K+
Sbjct: 163 ECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKD 218
Score = 279 (103.3 bits), Expect = 1.1e-62, Sum P(2) = 1.1e-62
Identities = 57/113 (50%), Positives = 66/113 (58%)
Query: 323 PAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVF 382
P + N N Q EGP GANLFIYH+PQEFGDQ+L F FG V+SAKVF
Sbjct: 402 PTLYNQN-LLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVF 460
Query: 383 VDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 435
+DK T +SKCFGFVSY++P SAQ AI MNG R +KPY
Sbjct: 461 IDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSKPY 513
Score = 180 (68.4 bits), Expect = 9.3e-39, Sum P(2) = 9.3e-39
Identities = 48/156 (30%), Positives = 78/156 (50%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLF+G + K TE + MF F ++E I++ SRGC FV +R A A+ A
Sbjct: 136 KLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDG-LSRGCAFVTFTTRAMAQTAIKA 194
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 135
H +T+ G SSP+ VK+AD + ++ E K L + + + +SA S++G + L L
Sbjct: 195 MHQAQTMEGCSSPMVVKFADTQKDK-EQKRMAQQLQQQMQQ--ISAA-SVWGNLAGLNTL 250
Query: 136 RGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEG 171
G Q + +L+ + + L ++ H M G
Sbjct: 251 -GPQYLA---LYLQLLQQTASSGNLNTLSSLHPMGG 282
>UNIPROTKB|G5EA30 [details] [associations]
symbol:CELF1 "CUG triplet repeat, RNA binding protein 1,
isoform CRA_c" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CH471064 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC090559 UniGene:Hs.595333
HGNC:HGNC:2549 ChiTaRS:CELF1 OMA:PTLYNQS ProteinModelPortal:G5EA30
SMR:G5EA30 PRIDE:G5EA30 Ensembl:ENST00000531165 ArrayExpress:G5EA30
Bgee:G5EA30 Uniprot:G5EA30
Length = 514
Score = 379 (138.5 bits), Expect = 1.1e-62, Sum P(2) = 1.1e-62
Identities = 74/176 (42%), Positives = 116/176 (65%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRA--SRGCCFVICPSRQEADKA 72
+K+FVGQVP+ +E L +F+++ V E+N+++D++ S+GCCFV +R+ A +A
Sbjct: 43 IKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 102
Query: 73 VNACHNKKTLPGASSPLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
NA HN K LPG P+Q+K AD E + KLFIGM+ K +E ++ +FS +G I+
Sbjct: 103 QNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIE 162
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+ +ILRG S+GCAF+ + T+ A A++A++ MEG S P+VVK+ADT+K+
Sbjct: 163 ECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKD 218
Score = 279 (103.3 bits), Expect = 1.1e-62, Sum P(2) = 1.1e-62
Identities = 57/113 (50%), Positives = 66/113 (58%)
Query: 323 PAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVF 382
P + N N Q EGP GANLFIYH+PQEFGDQ+L F FG V+SAKVF
Sbjct: 403 PTLYNQN-LLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVF 461
Query: 383 VDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 435
+DK T +SKCFGFVSY++P SAQ AI MNG R +KPY
Sbjct: 462 IDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSKPY 514
Score = 180 (68.4 bits), Expect = 9.4e-39, Sum P(2) = 9.4e-39
Identities = 48/156 (30%), Positives = 78/156 (50%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLF+G + K TE + MF F ++E I++ SRGC FV +R A A+ A
Sbjct: 136 KLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDG-LSRGCAFVTFTTRAMAQTAIKA 194
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 135
H +T+ G SSP+ VK+AD + ++ E K L + + + +SA S++G + L L
Sbjct: 195 MHQAQTMEGCSSPMVVKFADTQKDK-EQKRMAQQLQQQMQQ--ISAA-SVWGNLAGLNTL 250
Query: 136 RGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEG 171
G Q + +L+ + + L ++ H M G
Sbjct: 251 -GPQYLA---LYLQLLQQTASSGNLNTLSSLHPMGG 282
>UNIPROTKB|Q92879 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0007286 "spermatid development" evidence=IEA] [GO:0031369
"translation initiation factor binding" evidence=IEA] [GO:0040018
"positive regulation of multicellular organism growth"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006376
"mRNA splice site selection" evidence=ISS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0042835 "BRE binding" evidence=IDA] [GO:0016246
"RNA interference" evidence=NAS] [GO:0007281 "germ cell
development" evidence=NAS] [GO:0009790 "embryo development"
evidence=NAS] [GO:0030529 "ribonucleoprotein complex" evidence=NAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=NAS] [GO:0003723 "RNA binding" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0043484 "regulation of RNA
splicing" evidence=IDA] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0003729 "mRNA binding" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 EMBL:CH471064 GO:GO:0016246
GO:GO:0007286 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0040018 GO:GO:0003676 GO:GO:0009790 GO:GO:0030529
GO:GO:0007281 GO:GO:0043484 GO:GO:0000900 HOVERGEN:HBG107646
KO:K13207 CTD:10658 eggNOG:NOG251494 HOGENOM:HOG000004754
OrthoDB:EOG4N8R4X EMBL:U63289 EMBL:AF248648 EMBL:AF267533
EMBL:AF267534 EMBL:AJ007988 EMBL:AK304430 EMBL:AB210019
EMBL:AC090559 EMBL:BC031079 IPI:IPI00034015 IPI:IPI00218388
IPI:IPI00218389 IPI:IPI00853009 IPI:IPI00956101
RefSeq:NP_001020767.1 RefSeq:NP_001166110.1 RefSeq:NP_001166111.1
RefSeq:NP_006551.1 RefSeq:NP_941989.1 UniGene:Hs.595333 PDB:2CPZ
PDB:2DHS PDB:2RQ4 PDB:2RQC PDB:3NMR PDB:3NNA PDB:3NNC PDB:3NNH
PDBsum:2CPZ PDBsum:2DHS PDBsum:2RQ4 PDBsum:2RQC PDBsum:3NMR
PDBsum:3NNA PDBsum:3NNC PDBsum:3NNH ProteinModelPortal:Q92879
SMR:Q92879 IntAct:Q92879 MINT:MINT-1382906 STRING:Q92879
PhosphoSite:Q92879 DMDM:17374605 PaxDb:Q92879 PRIDE:Q92879
DNASU:10658 Ensembl:ENST00000310513 Ensembl:ENST00000358597
Ensembl:ENST00000361904 Ensembl:ENST00000395290
Ensembl:ENST00000395292 Ensembl:ENST00000532048 GeneID:10658
KEGG:hsa:10658 UCSC:uc001nfk.2 UCSC:uc001nfl.3 UCSC:uc001nfm.3
UCSC:uc001nfn.3 GeneCards:GC11M047602 HGNC:HGNC:2549 HPA:CAB016114
MIM:601074 neXtProt:NX_Q92879 PharmGKB:PA27045 InParanoid:Q92879
PhylomeDB:Q92879 ChiTaRS:CELF1 EvolutionaryTrace:Q92879
GenomeRNAi:10658 NextBio:40521 ArrayExpress:Q92879 Bgee:Q92879
CleanEx:HS_CUGBP1 Genevestigator:Q92879 GermOnline:ENSG00000149187
GO:GO:0042835 GO:GO:0006376 Uniprot:Q92879
Length = 486
Score = 379 (138.5 bits), Expect = 1.1e-62, Sum P(2) = 1.1e-62
Identities = 74/176 (42%), Positives = 116/176 (65%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRA--SRGCCFVICPSRQEADKA 72
+K+FVGQVP+ +E L +F+++ V E+N+++D++ S+GCCFV +R+ A +A
Sbjct: 16 IKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 75
Query: 73 VNACHNKKTLPGASSPLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
NA HN K LPG P+Q+K AD E + KLFIGM+ K +E ++ +FS +G I+
Sbjct: 76 QNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIE 135
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+ +ILRG S+GCAF+ + T+ A A++A++ MEG S P+VVK+ADT+K+
Sbjct: 136 ECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKD 191
Score = 279 (103.3 bits), Expect = 1.1e-62, Sum P(2) = 1.1e-62
Identities = 57/113 (50%), Positives = 66/113 (58%)
Query: 323 PAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVF 382
P + N N Q EGP GANLFIYH+PQEFGDQ+L F FG V+SAKVF
Sbjct: 375 PTLYNQN-LLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVF 433
Query: 383 VDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 435
+DK T +SKCFGFVSY++P SAQ AI MNG R +KPY
Sbjct: 434 IDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSKPY 486
Score = 180 (68.4 bits), Expect = 5.9e-39, Sum P(2) = 5.9e-39
Identities = 48/156 (30%), Positives = 78/156 (50%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLF+G + K TE + MF F ++E I++ SRGC FV +R A A+ A
Sbjct: 109 KLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDG-LSRGCAFVTFTTRAMAQTAIKA 167
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 135
H +T+ G SSP+ VK+AD + ++ E K L + + + +SA S++G + L L
Sbjct: 168 MHQAQTMEGCSSPMVVKFADTQKDK-EQKRMAQQLQQQMQQ--ISAA-SVWGNLAGLNTL 223
Query: 136 RGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEG 171
G Q + +L+ + + L ++ H M G
Sbjct: 224 -GPQYLA---LYLQLLQQTASSGNLNTLSSLHPMGG 255
>FB|FBgn0000114 [details] [associations]
symbol:aret "arrest" species:7227 "Drosophila melanogaster"
[GO:0048477 "oogenesis" evidence=IMP] [GO:0007286 "spermatid
development" evidence=IMP] [GO:0007319 "negative regulation of
oskar mRNA translation" evidence=IDA;NAS;TAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0030727 "germarium-derived female germ-line cyst
formation" evidence=TAS] [GO:0042078 "germ-line stem cell division"
evidence=NAS] [GO:0046011 "regulation of oskar mRNA translation"
evidence=TAS] [GO:0006378 "mRNA polyadenylation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0017148
"negative regulation of translation" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0043186 "P granule"
evidence=IDA] [GO:0005634 "nucleus" evidence=IC] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0003723 "RNA binding" evidence=IDA] [GO:0007281
"germ cell development" evidence=IMP] [GO:0031536 "positive
regulation of exit from mitosis" evidence=IMP] [GO:0002121
"inter-male aggressive behavior" evidence=IMP] [GO:0007476
"imaginal disc-derived wing morphogenesis" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:AE014134 GO:GO:0007286
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
GO:GO:0002121 HSSP:P19339 GO:GO:0007476 GO:GO:0030727 GO:GO:0007319
GO:GO:0031536 GO:GO:0042078 GeneTree:ENSGT00560000076837
GO:GO:0000381 GO:GO:0043186 FlyBase:FBgn0000114 UniGene:Dm.4487
GeneID:34648 KEGG:dme:Dmel_CG31762 CTD:34648 KO:K02177
GenomeRNAi:34648 NextBio:789496 EMBL:BT133212 RefSeq:NP_723737.1
SMR:Q8IP90 MINT:MINT-1597685 STRING:Q8IP90
EnsemblMetazoa:FBtr0080344 EnsemblMetazoa:FBtr0331645
UCSC:CG31762-RB InParanoid:Q8IP90 OMA:ASAYMST Uniprot:Q8IP90
Length = 810
Score = 417 (151.9 bits), Expect = 1.2e-62, Sum P(2) = 1.2e-62
Identities = 84/173 (48%), Positives = 118/173 (68%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
+K+FVGQVPK M E+QL MF+E+ V +N+++DK T S+GCCFV +R A KA +
Sbjct: 357 IKMFVGQVPKSMDESQLREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTRHAALKAQD 416
Query: 75 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 134
A HN KTL G P+Q+K AD E R E KLF+GML K ++E +V LF ++G I++ +
Sbjct: 417 ALHNVKTLNGMYHPIQMKPADSE-NRNERKLFVGMLNKKLNENDVRKLFEVHGAIEECTV 475
Query: 135 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHK-MEGSSVPLVVKWADTEKE 186
LR SKGCAF+ + TK A++A++ ++K MEG + PLVVK+ADT+KE
Sbjct: 476 LRDQNGQSKGCAFVTFATKHAAISAIKVTLSQNKIMEGCTSPLVVKFADTQKE 528
Score = 257 (95.5 bits), Expect = 1.2e-62, Sum P(2) = 1.2e-62
Identities = 51/93 (54%), Positives = 62/93 (66%)
Query: 343 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 402
QIEGP G NLFIYH+PQEF D +L + F FG V+SAKVF+DK T +SKCFGFVS+++P
Sbjct: 719 QIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPD 778
Query: 403 SAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 435
SAQ AI MNG + K +KPY
Sbjct: 779 SAQVAIKAMNGFQVGTKRLKVQLKKP-KDSKPY 810
Score = 148 (57.2 bits), Expect = 1.1e-30, Sum P(2) = 1.1e-30
Identities = 30/95 (31%), Positives = 54/95 (56%)
Query: 91 VKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQ-TSKGCAFLK 149
V Y + E + K+F+G +PK++ E+++ +F YG + + +LR SKGC F+
Sbjct: 345 VTYGEKEPDPDNIKMFVGQVPKSMDESQLREMFEEYGAVHSINVLRDKATGISKGCCFVT 404
Query: 150 YETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 184
+ T+ AL A +A++ + G P+ +K AD+E
Sbjct: 405 FYTRHAALKAQDALHNVKTLNGMYHPIQMKPADSE 439
Score = 132 (51.5 bits), Expect = 5.1e-29, Sum P(2) = 5.1e-29
Identities = 28/91 (30%), Positives = 53/91 (58%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFVG + K + E + +F+ ++E +++D+ + S+GC FV ++ A A+
Sbjct: 445 KLFVGMLNKKLNENDVRKLFEVHGAIEECTVLRDQNGQ-SKGCAFVTFATKHAAISAIKV 503
Query: 76 CHNK-KTLPGASSPLQVKYADGELERLEHKL 105
++ K + G +SPL VK+AD + E+ + K+
Sbjct: 504 TLSQNKIMEGCTSPLVVKFADTQKEKEQKKI 534
>RGD|1563168 [details] [associations]
symbol:Celf3 "CUGBP, Elav-like family member 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0007283
"spermatogenesis" evidence=ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0008380 "RNA splicing" evidence=ISO] [GO:0030317
"sperm motility" evidence=ISO] [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1563168 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0030317
GO:GO:0048026 GeneTree:ENSGT00560000076837 GO:GO:0000381
OrthoDB:EOG4RJG30 EMBL:AC133978 IPI:IPI00204869
ProteinModelPortal:D4A916 Ensembl:ENSRNOT00000028324
UCSC:RGD:1563168 Uniprot:D4A916
Length = 494
Score = 404 (147.3 bits), Expect = 2.9e-62, Sum P(2) = 2.9e-62
Identities = 78/172 (45%), Positives = 114/172 (66%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
+KLFVGQ+P+H+ E L +F++F + E+ +IKDK T +GC F+ +R A KA +
Sbjct: 7 IKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQS 66
Query: 75 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 134
A H +KTLPG + P+QVK AD E + KLF+GML K ++ +V +F +GTI + +
Sbjct: 67 ALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTV 126
Query: 135 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
LRG TSKGCAF+K++T +A AA+ ++ + G+S LVVK+ADTEKE
Sbjct: 127 LRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKE 178
Score = 250 (93.1 bits), Expect = 2.9e-62, Sum P(2) = 2.9e-62
Identities = 74/224 (33%), Positives = 99/224 (44%)
Query: 219 GYAP-PYNGYGYQASGS-Y--GLMQYRLPPM--QNQPGFHGIIPPVNQGNAMRGASPDLS 272
GY+P P G A + Y G+ Y + + G I+P + M A+ +
Sbjct: 281 GYSPVPTQPTGQPAPDALYPNGVHPYPDEALSAERSAGEAPIMPQTHSWLVMLSAAQSPA 340
Query: 273 SNMGPRNYAMPPSGFVGSGYPAVPGLQYP-MPYPGGMLGHRPLNNSPGSVSPAVANSNPX 331
+ + P A + YPA L P P P ++ +P P
Sbjct: 341 APVDPLQQAYAGMQHYTAAYPAAYSLVAPAFPQPPALVAQQP---------PPPPQQQQQ 391
Query: 332 XXXXXXXXXXXQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSK 391
Q + P G N+FIYH+PQEF D E+ F FG V+SAKVFVD+AT SK
Sbjct: 392 QQQQQQQQQQQQ-QRPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSK 450
Query: 392 CFGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 435
CFGFVS+++PASAQ AI MNG R N+PY
Sbjct: 451 CFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY 494
Score = 179 (68.1 bits), Expect = 6.0e-34, Sum P(2) = 6.0e-34
Identities = 37/85 (43%), Positives = 51/85 (60%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFVG + K T+ + MF+ F +DE +++ S+GC FV + EA A+N
Sbjct: 96 KLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDG-TSKGCAFVKFQTHAEAQAAINT 154
Query: 76 CHNKKTLPGASSPLQVKYADGELER 100
H+ +TLPGASS L VK+AD E ER
Sbjct: 155 LHSSRTLPGASSSLVVKFADTEKER 179
Score = 76 (31.8 bits), Expect = 2.0e-14, Sum P(2) = 2.0e-14
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQIL--RGSQQTSKGCAFLKYETKEQALAALEA 162
+FI LP+ +++E+ +F +G + ++ R + Q SK F+ ++ A AA++A
Sbjct: 411 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQ-SKCFGFVSFDNPASAQAAIQA 469
Query: 163 ING 165
+NG
Sbjct: 470 MNG 472
>UNIPROTKB|Q5F3T7 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207
EMBL:AJ851563 EMBL:AB050497 IPI:IPI00581213 IPI:IPI00854332
RefSeq:NP_001012539.1 UniGene:Gga.14943 UniGene:Gga.56092
ProteinModelPortal:Q5F3T7 SMR:Q5F3T7 STRING:Q5F3T7 PRIDE:Q5F3T7
GeneID:373923 KEGG:gga:373923 CTD:10658 eggNOG:NOG251494
HOGENOM:HOG000004754 InParanoid:Q5F3T7 OrthoDB:EOG4N8R4X
NextBio:20813455 Uniprot:Q5F3T7
Length = 489
Score = 376 (137.4 bits), Expect = 3.7e-62, Sum P(2) = 3.7e-62
Identities = 74/176 (42%), Positives = 115/176 (65%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRA--SRGCCFVICPSRQEADKA 72
+K+FVGQVP+ E L +F+++ V E+N+++D++ S+GCCFV +R+ A +A
Sbjct: 16 IKMFVGQVPRSWCEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 75
Query: 73 VNACHNKKTLPGASSPLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
NA HN K LPG P+Q+K AD E + KLFIGM+ K +E ++ +FS +G I+
Sbjct: 76 QNALHNMKILPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCNENDIRVMFSPFGQIE 135
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+ +ILRG S+GCAF+ + T+ A A++A++ MEG S P+VVK+ADT+K+
Sbjct: 136 ECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPIVVKFADTQKD 191
Score = 277 (102.6 bits), Expect = 3.7e-62, Sum P(2) = 3.7e-62
Identities = 54/93 (58%), Positives = 62/93 (66%)
Query: 343 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 402
Q EGP GANLFIYH+PQEFGDQ+L F FG V+SAKVF+DK T +SKCFGFVSY++P
Sbjct: 397 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPV 456
Query: 403 SAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 435
SAQ AI MNG R +KPY
Sbjct: 457 SAQAAIQSMNGFQIGMKRLKVQLKRSKNDSKPY 489
Score = 179 (68.1 bits), Expect = 2.6e-38, Sum P(2) = 2.6e-38
Identities = 48/156 (30%), Positives = 77/156 (49%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLF+G + K E + MF F ++E I++ SRGC FV +R A A+ A
Sbjct: 109 KLFIGMISKKCNENDIRVMFSPFGQIEECRILRGPDG-LSRGCAFVTFTTRAMAQTAIKA 167
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 135
H +T+ G SSP+ VK+AD + ++ E K L + + + +SA S++G + L L
Sbjct: 168 MHQAQTMEGCSSPIVVKFADTQKDK-EQKRIAQQLQQQMQQ--ISAA-SVWGNLAGLNTL 223
Query: 136 RGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEG 171
G Q + L+ +T + L ++ H M G
Sbjct: 224 -GPQYLALYLQLLQ-QTAAASSGNLNTLSSLHPMGG 257
>UNIPROTKB|E1C045 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006376 "mRNA splice site selection"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006376
GeneTree:ENSGT00560000076837 IPI:IPI00587312 EMBL:AADN02039408
EMBL:AADN02039409 EMBL:AADN02039410 EMBL:AADN02039411
EMBL:AADN02039412 EMBL:AADN02039413 EMBL:AADN02039414
EMBL:AADN02039415 EMBL:AADN02039416 EMBL:AADN02039417
EMBL:AADN02039418 EMBL:AADN02039419 EMBL:AADN02039420
EMBL:AADN02039421 EMBL:AADN02039422 EMBL:AADN02039423
EMBL:AADN02039424 EMBL:AADN02039425 EMBL:AADN02039426
EMBL:AADN02039427 EMBL:AADN02039428 EMBL:AADN02039429
EMBL:AADN02039430 EMBL:AADN02039431 EMBL:AADN02039432
EMBL:AADN02039433 ProteinModelPortal:E1C045
Ensembl:ENSGALT00000010858 ArrayExpress:E1C045 Uniprot:E1C045
Length = 488
Score = 376 (137.4 bits), Expect = 4.8e-62, Sum P(2) = 4.8e-62
Identities = 73/176 (41%), Positives = 117/176 (66%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRA--SRGCCFVICPSRQEADKA 72
+K+FVGQ+P+ +E +L +F+ + V ++N+++D++ S+GCCFV +R+ A +A
Sbjct: 16 IKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 75
Query: 73 VNACHNKKTLPGASSPLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
NA HN KTLPG P+Q+K AD E + KLFIGM+ K +E ++ +FS +G I+
Sbjct: 76 QNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIE 135
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+ +ILRG S+GCAF+ + T+ A A++A++ MEG S P+VVK+ADT+K+
Sbjct: 136 ECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKD 191
Score = 276 (102.2 bits), Expect = 4.8e-62, Sum P(2) = 4.8e-62
Identities = 53/93 (56%), Positives = 62/93 (66%)
Query: 343 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 402
Q EGP GANLFIYH+PQEFGDQ++ F FG V+SAKVF+DK T +SKCFGFVSY++P
Sbjct: 396 QKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPV 455
Query: 403 SAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 435
SAQ AI MNG R +KPY
Sbjct: 456 SAQAAIQAMNGFQIGMKRLKVQLKRSKNDSKPY 488
Score = 161 (61.7 bits), Expect = 3.0e-36, Sum P(2) = 3.0e-36
Identities = 33/90 (36%), Positives = 50/90 (55%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLF+G V K E + MF F ++E I++ SRGC FV +R A A+ A
Sbjct: 109 KLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDG-LSRGCAFVTFSTRAMAQNAIKA 167
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKL 105
H +T+ G SSP+ VK+AD + ++ + +L
Sbjct: 168 MHQSQTMEGCSSPIVVKFADTQKDKEQRRL 197
>UNIPROTKB|F1NZY6 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00560000076837 EMBL:AADN02039408
EMBL:AADN02039409 EMBL:AADN02039410 EMBL:AADN02039411
EMBL:AADN02039412 EMBL:AADN02039413 EMBL:AADN02039414
EMBL:AADN02039415 EMBL:AADN02039416 EMBL:AADN02039417
EMBL:AADN02039418 EMBL:AADN02039419 EMBL:AADN02039420
EMBL:AADN02039421 EMBL:AADN02039422 EMBL:AADN02039423
EMBL:AADN02039424 EMBL:AADN02039425 EMBL:AADN02039426
EMBL:AADN02039427 EMBL:AADN02039428 EMBL:AADN02039429
EMBL:AADN02039430 EMBL:AADN02039431 EMBL:AADN02039432
EMBL:AADN02039433 IPI:IPI00971429 Ensembl:ENSGALT00000010859
ArrayExpress:F1NZY6 Uniprot:F1NZY6
Length = 484
Score = 376 (137.4 bits), Expect = 4.8e-62, Sum P(2) = 4.8e-62
Identities = 73/176 (41%), Positives = 117/176 (66%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRA--SRGCCFVICPSRQEADKA 72
+K+FVGQ+P+ +E +L +F+ + V ++N+++D++ S+GCCFV +R+ A +A
Sbjct: 16 IKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 75
Query: 73 VNACHNKKTLPGASSPLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
NA HN KTLPG P+Q+K AD E + KLFIGM+ K +E ++ +FS +G I+
Sbjct: 76 QNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIE 135
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+ +ILRG S+GCAF+ + T+ A A++A++ MEG S P+VVK+ADT+K+
Sbjct: 136 ECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKD 191
Score = 276 (102.2 bits), Expect = 4.8e-62, Sum P(2) = 4.8e-62
Identities = 53/93 (56%), Positives = 62/93 (66%)
Query: 343 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 402
Q EGP GANLFIYH+PQEFGDQ++ F FG V+SAKVF+DK T +SKCFGFVSY++P
Sbjct: 392 QKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPV 451
Query: 403 SAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 435
SAQ AI MNG R +KPY
Sbjct: 452 SAQAAIQAMNGFQIGMKRLKVQLKRSKNDSKPY 484
Score = 161 (61.7 bits), Expect = 2.8e-36, Sum P(2) = 2.8e-36
Identities = 33/90 (36%), Positives = 50/90 (55%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLF+G V K E + MF F ++E I++ SRGC FV +R A A+ A
Sbjct: 109 KLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDG-LSRGCAFVTFSTRAMAQNAIKA 167
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKL 105
H +T+ G SSP+ VK+AD + ++ + +L
Sbjct: 168 MHQSQTMEGCSSPIVVKFADTQKDKEQRRL 197
>UNIPROTKB|F1P017 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006376 "mRNA splice site selection"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006376
GeneTree:ENSGT00560000076837 OMA:TMRNEEL EMBL:AADN02039408
EMBL:AADN02039409 EMBL:AADN02039410 EMBL:AADN02039411
EMBL:AADN02039412 EMBL:AADN02039413 EMBL:AADN02039414
EMBL:AADN02039415 EMBL:AADN02039416 EMBL:AADN02039417
EMBL:AADN02039418 EMBL:AADN02039419 EMBL:AADN02039420
EMBL:AADN02039421 EMBL:AADN02039422 EMBL:AADN02039423
EMBL:AADN02039424 EMBL:AADN02039425 EMBL:AADN02039426
EMBL:AADN02039427 EMBL:AADN02039428 EMBL:AADN02039429
EMBL:AADN02039430 EMBL:AADN02039431 EMBL:AADN02039432
EMBL:AADN02039433 IPI:IPI00820413 Ensembl:ENSGALT00000040039
ArrayExpress:F1P017 Uniprot:F1P017
Length = 494
Score = 376 (137.4 bits), Expect = 4.8e-62, Sum P(2) = 4.8e-62
Identities = 73/176 (41%), Positives = 117/176 (66%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRA--SRGCCFVICPSRQEADKA 72
+K+FVGQ+P+ +E +L +F+ + V ++N+++D++ S+GCCFV +R+ A +A
Sbjct: 22 IKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 81
Query: 73 VNACHNKKTLPGASSPLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
NA HN KTLPG P+Q+K AD E + KLFIGM+ K +E ++ +FS +G I+
Sbjct: 82 QNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIE 141
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+ +ILRG S+GCAF+ + T+ A A++A++ MEG S P+VVK+ADT+K+
Sbjct: 142 ECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKD 197
Score = 276 (102.2 bits), Expect = 4.8e-62, Sum P(2) = 4.8e-62
Identities = 53/93 (56%), Positives = 62/93 (66%)
Query: 343 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 402
Q EGP GANLFIYH+PQEFGDQ++ F FG V+SAKVF+DK T +SKCFGFVSY++P
Sbjct: 402 QKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPV 461
Query: 403 SAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 435
SAQ AI MNG R +KPY
Sbjct: 462 SAQAAIQAMNGFQIGMKRLKVQLKRSKNDSKPY 494
Score = 161 (61.7 bits), Expect = 3.3e-36, Sum P(2) = 3.3e-36
Identities = 33/90 (36%), Positives = 50/90 (55%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLF+G V K E + MF F ++E I++ SRGC FV +R A A+ A
Sbjct: 115 KLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDG-LSRGCAFVTFSTRAMAQNAIKA 173
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKL 105
H +T+ G SSP+ VK+AD + ++ + +L
Sbjct: 174 MHQSQTMEGCSSPIVVKFADTQKDKEQRRL 203
>UNIPROTKB|F1P674 [details] [associations]
symbol:CELF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13207 GeneTree:ENSGT00560000076837 CTD:10659
OMA:TMRNEEL EMBL:AAEX03001288 EMBL:AAEX03001289 EMBL:AAEX03001290
RefSeq:XP_003433765.1 ProteinModelPortal:F1P674
Ensembl:ENSCAFT00000008021 GeneID:607310 KEGG:cfa:607310
Uniprot:F1P674
Length = 488
Score = 376 (137.4 bits), Expect = 4.8e-62, Sum P(2) = 4.8e-62
Identities = 73/176 (41%), Positives = 117/176 (66%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRA--SRGCCFVICPSRQEADKA 72
+K+FVGQ+P+ +E +L +F+ + V ++N+++D++ S+GCCFV +R+ A +A
Sbjct: 16 IKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 75
Query: 73 VNACHNKKTLPGASSPLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
NA HN KTLPG P+Q+K AD E + KLFIGM+ K +E ++ +FS +G I+
Sbjct: 76 QNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIE 135
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+ +ILRG S+GCAF+ + T+ A A++A++ MEG S P+VVK+ADT+K+
Sbjct: 136 ECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKD 191
Score = 276 (102.2 bits), Expect = 4.8e-62, Sum P(2) = 4.8e-62
Identities = 53/93 (56%), Positives = 62/93 (66%)
Query: 343 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 402
Q EGP GANLFIYH+PQEFGDQ++ F FG V+SAKVF+DK T +SKCFGFVSY++P
Sbjct: 396 QKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPV 455
Query: 403 SAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 435
SAQ AI MNG R +KPY
Sbjct: 456 SAQAAIQAMNGFQIGMKRLKVQLKRSKNDSKPY 488
Score = 161 (61.7 bits), Expect = 3.0e-36, Sum P(2) = 3.0e-36
Identities = 33/90 (36%), Positives = 50/90 (55%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLF+G V K E + MF F ++E I++ SRGC FV +R A A+ A
Sbjct: 109 KLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDG-LSRGCAFVTFSTRAMAQNAIKA 167
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKL 105
H +T+ G SSP+ VK+AD + ++ + +L
Sbjct: 168 MHQSQTMEGCSSPIVVKFADTQKDKEQRRL 197
>UNIPROTKB|E9PC62 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006376 "mRNA splice site selection"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC026887 KO:K13207
GO:GO:0006376 CTD:10659 EMBL:AL157704 EMBL:AL136320 IPI:IPI00845479
RefSeq:NP_006552.3 UniGene:Hs.309288 GeneID:10659 KEGG:hsa:10659
HGNC:HGNC:2550 ChiTaRS:CELF2 GenomeRNAi:10659 NextBio:40529
OMA:TMRNEEL EMBL:AL136369 EMBL:AL138769 EMBL:AL162408 SMR:E9PC62
Ensembl:ENST00000450189 Ensembl:ENST00000542579 UCSC:uc001ikl.4
Uniprot:E9PC62
Length = 521
Score = 376 (137.4 bits), Expect = 4.8e-62, Sum P(2) = 4.8e-62
Identities = 73/176 (41%), Positives = 117/176 (66%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRA--SRGCCFVICPSRQEADKA 72
+K+FVGQ+P+ +E +L +F+ + V ++N+++D++ S+GCCFV +R+ A +A
Sbjct: 47 IKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 106
Query: 73 VNACHNKKTLPGASSPLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
NA HN KTLPG P+Q+K AD E + KLFIGM+ K +E ++ +FS +G I+
Sbjct: 107 QNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIE 166
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+ +ILRG S+GCAF+ + T+ A A++A++ MEG S P+VVK+ADT+K+
Sbjct: 167 ECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKD 222
Score = 276 (102.2 bits), Expect = 4.8e-62, Sum P(2) = 4.8e-62
Identities = 53/93 (56%), Positives = 62/93 (66%)
Query: 343 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 402
Q EGP GANLFIYH+PQEFGDQ++ F FG V+SAKVF+DK T +SKCFGFVSY++P
Sbjct: 429 QKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPV 488
Query: 403 SAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 435
SAQ AI MNG R +KPY
Sbjct: 489 SAQAAIQAMNGFQIGMKRLKVQLKRSKNDSKPY 521
Score = 161 (61.7 bits), Expect = 5.0e-36, Sum P(2) = 5.0e-36
Identities = 33/90 (36%), Positives = 50/90 (55%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLF+G V K E + MF F ++E I++ SRGC FV +R A A+ A
Sbjct: 140 KLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDG-LSRGCAFVTFSTRAMAQNAIKA 198
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKL 105
H +T+ G SSP+ VK+AD + ++ + +L
Sbjct: 199 MHQSQTMEGCSSPIVVKFADTQKDKEQRRL 228
>UNIPROTKB|O95319 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006396 "RNA processing"
evidence=TAS] [GO:0008016 "regulation of heart contraction"
evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0008016 GO:GO:0003723
GO:GO:0006396 EMBL:CH471072 EMBL:AC026887 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 eggNOG:NOG251494 CTD:10659
EMBL:AF090694 EMBL:AF090693 EMBL:AF036956 EMBL:U69546 EMBL:AF295068
EMBL:AF295063 EMBL:AF295064 EMBL:AF295065 EMBL:AF295066
EMBL:AF295067 EMBL:AF314199 EMBL:AF432906 EMBL:AK316354
EMBL:AL157704 EMBL:AL136320 EMBL:BC036391 IPI:IPI00410277
IPI:IPI00607544 IPI:IPI00845479 IPI:IPI00845480 IPI:IPI00853320
RefSeq:NP_001020247.1 RefSeq:NP_001020248.1 RefSeq:NP_001077060.1
RefSeq:NP_006552.3 UniGene:Hs.309288 ProteinModelPortal:O95319
SMR:O95319 IntAct:O95319 MINT:MINT-2868664 STRING:O95319
PhosphoSite:O95319 UCD-2DPAGE:O95319 PaxDb:O95319 PRIDE:O95319
Ensembl:ENST00000315874 Ensembl:ENST00000354440
Ensembl:ENST00000379261 Ensembl:ENST00000399850
Ensembl:ENST00000416382 Ensembl:ENST00000417956
Ensembl:ENST00000427450 GeneID:10659 KEGG:hsa:10659 UCSC:uc001iki.4
UCSC:uc001ikk.2 UCSC:uc001iko.4 UCSC:uc001ikp.4 UCSC:uc010qbj.1
GeneCards:GC10P011049 HGNC:HGNC:2550 MIM:602538 neXtProt:NX_O95319
PharmGKB:PA27046 ChiTaRS:CELF2 GenomeRNAi:10659 NextBio:40529
ArrayExpress:O95319 Bgee:O95319 CleanEx:HS_CUGBP2
Genevestigator:O95319 Uniprot:O95319
Length = 508
Score = 376 (137.4 bits), Expect = 4.8e-62, Sum P(2) = 4.8e-62
Identities = 73/176 (41%), Positives = 117/176 (66%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRA--SRGCCFVICPSRQEADKA 72
+K+FVGQ+P+ +E +L +F+ + V ++N+++D++ S+GCCFV +R+ A +A
Sbjct: 40 IKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 99
Query: 73 VNACHNKKTLPGASSPLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
NA HN KTLPG P+Q+K AD E + KLFIGM+ K +E ++ +FS +G I+
Sbjct: 100 QNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIE 159
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+ +ILRG S+GCAF+ + T+ A A++A++ MEG S P+VVK+ADT+K+
Sbjct: 160 ECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKD 215
Score = 276 (102.2 bits), Expect = 4.8e-62, Sum P(2) = 4.8e-62
Identities = 53/93 (56%), Positives = 62/93 (66%)
Query: 343 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 402
Q EGP GANLFIYH+PQEFGDQ++ F FG V+SAKVF+DK T +SKCFGFVSY++P
Sbjct: 416 QKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPV 475
Query: 403 SAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 435
SAQ AI MNG R +KPY
Sbjct: 476 SAQAAIQAMNGFQIGMKRLKVQLKRSKNDSKPY 508
Score = 161 (61.7 bits), Expect = 4.1e-36, Sum P(2) = 4.1e-36
Identities = 33/90 (36%), Positives = 50/90 (55%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLF+G V K E + MF F ++E I++ SRGC FV +R A A+ A
Sbjct: 133 KLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDG-LSRGCAFVTFSTRAMAQNAIKA 191
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKL 105
H +T+ G SSP+ VK+AD + ++ + +L
Sbjct: 192 MHQSQTMEGCSSPIVVKFADTQKDKEQRRL 221
>UNIPROTKB|Q5VZZ6 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC026887 HOVERGEN:HBG107646 HOGENOM:HOG000004754
EMBL:AL157704 EMBL:AL136320 IPI:IPI00845480 UniGene:Hs.309288
HGNC:HGNC:2550 EMBL:AL136369 EMBL:AL138769 EMBL:AL162408 SMR:Q5VZZ6
Ensembl:ENST00000354897 Uniprot:Q5VZZ6
Length = 498
Score = 376 (137.4 bits), Expect = 4.8e-62, Sum P(2) = 4.8e-62
Identities = 73/176 (41%), Positives = 117/176 (66%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRA--SRGCCFVICPSRQEADKA 72
+K+FVGQ+P+ +E +L +F+ + V ++N+++D++ S+GCCFV +R+ A +A
Sbjct: 16 IKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 75
Query: 73 VNACHNKKTLPGASSPLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
NA HN KTLPG P+Q+K AD E + KLFIGM+ K +E ++ +FS +G I+
Sbjct: 76 QNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIE 135
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+ +ILRG S+GCAF+ + T+ A A++A++ MEG S P+VVK+ADT+K+
Sbjct: 136 ECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKD 191
Score = 276 (102.2 bits), Expect = 4.8e-62, Sum P(2) = 4.8e-62
Identities = 53/93 (56%), Positives = 62/93 (66%)
Query: 343 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 402
Q EGP GANLFIYH+PQEFGDQ++ F FG V+SAKVF+DK T +SKCFGFVSY++P
Sbjct: 406 QKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPV 465
Query: 403 SAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 435
SAQ AI MNG R +KPY
Sbjct: 466 SAQAAIQAMNGFQIGMKRLKVQLKRSKNDSKPY 498
Score = 161 (61.7 bits), Expect = 3.5e-36, Sum P(2) = 3.5e-36
Identities = 33/90 (36%), Positives = 50/90 (55%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLF+G V K E + MF F ++E I++ SRGC FV +R A A+ A
Sbjct: 109 KLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDG-LSRGCAFVTFSTRAMAQNAIKA 167
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKL 105
H +T+ G SSP+ VK+AD + ++ + +L
Sbjct: 168 MHQSQTMEGCSSPIVVKFADTQKDKEQRRL 197
>MGI|MGI:1338822 [details] [associations]
symbol:Celf2 "CUGBP, Elav-like family member 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006376
"mRNA splice site selection" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1338822 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 eggNOG:NOG251494 GO:GO:0006376
GeneTree:ENSGT00560000076837 CTD:10659 ChiTaRS:CELF2 EMBL:AF090696
EMBL:AF090697 EMBL:Y18298 EMBL:AK137292 EMBL:AK151818 EMBL:AK152628
EMBL:AK153267 EMBL:AK160861 EMBL:AK161349 EMBL:AK164914
EMBL:AL929240 EMBL:AL845492 EMBL:AL845515 EMBL:BC026856
IPI:IPI00129146 IPI:IPI00651950 IPI:IPI00750780 IPI:IPI00751703
IPI:IPI00756899 IPI:IPI00853748 IPI:IPI00853844 IPI:IPI00853921
IPI:IPI00854018 IPI:IPI00854021 RefSeq:NP_001103698.1
RefSeq:NP_001103699.1 RefSeq:NP_001103700.1 RefSeq:NP_001103701.1
RefSeq:NP_001103702.1 RefSeq:NP_001153764.1 RefSeq:NP_001153765.1
RefSeq:NP_034290.2 UniGene:Mm.398543 ProteinModelPortal:Q9Z0H4
SMR:Q9Z0H4 STRING:Q9Z0H4 PhosphoSite:Q9Z0H4 PaxDb:Q9Z0H4
PRIDE:Q9Z0H4 Ensembl:ENSMUST00000002176 Ensembl:ENSMUST00000100429
Ensembl:ENSMUST00000114924 Ensembl:ENSMUST00000114927
Ensembl:ENSMUST00000114934 GeneID:14007 KEGG:mmu:14007
UCSC:uc008ign.1 UCSC:uc008igo.1 UCSC:uc008igp.1 UCSC:uc008igq.2
UCSC:uc008igs.2 UCSC:uc008igt.2 UCSC:uc008igv.2 InParanoid:Q9Z0H4
OMA:TMRNEEL NextBio:284908 Bgee:Q9Z0H4 CleanEx:MM_CUGBP2
Genevestigator:Q9Z0H4 Uniprot:Q9Z0H4
Length = 508
Score = 376 (137.4 bits), Expect = 4.8e-62, Sum P(2) = 4.8e-62
Identities = 73/176 (41%), Positives = 117/176 (66%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRA--SRGCCFVICPSRQEADKA 72
+K+FVGQ+P+ +E +L +F+ + V ++N+++D++ S+GCCFV +R+ A +A
Sbjct: 40 IKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 99
Query: 73 VNACHNKKTLPGASSPLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
NA HN KTLPG P+Q+K AD E + KLFIGM+ K +E ++ +FS +G I+
Sbjct: 100 QNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIE 159
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+ +ILRG S+GCAF+ + T+ A A++A++ MEG S P+VVK+ADT+K+
Sbjct: 160 ECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKD 215
Score = 276 (102.2 bits), Expect = 4.8e-62, Sum P(2) = 4.8e-62
Identities = 53/93 (56%), Positives = 62/93 (66%)
Query: 343 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 402
Q EGP GANLFIYH+PQEFGDQ++ F FG V+SAKVF+DK T +SKCFGFVSY++P
Sbjct: 416 QKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPV 475
Query: 403 SAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 435
SAQ AI MNG R +KPY
Sbjct: 476 SAQAAIQAMNGFQIGMKRLKVQLKRSKNDSKPY 508
Score = 161 (61.7 bits), Expect = 4.1e-36, Sum P(2) = 4.1e-36
Identities = 33/90 (36%), Positives = 50/90 (55%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLF+G V K E + MF F ++E I++ SRGC FV +R A A+ A
Sbjct: 133 KLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDG-LSRGCAFVTFSTRAMAQNAIKA 191
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKL 105
H +T+ G SSP+ VK+AD + ++ + +L
Sbjct: 192 MHQSQTMEGCSSPIVVKFADTQKDKEQRRL 221
>RGD|68347 [details] [associations]
symbol:Celf2 "CUGBP, Elav-like family member 2" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IDA] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=IEA;ISO]
[GO:0006376 "mRNA splice site selection" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360 RGD:68347
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207
eggNOG:NOG251494 HOGENOM:HOG000004754 OrthoDB:EOG4N8R4X
GO:GO:0006376 GeneTree:ENSGT00560000076837 CTD:10659 OMA:TMRNEEL
EMBL:AF090695 EMBL:AJ010351 EMBL:AJ010386 EMBL:BC129096
IPI:IPI00212483 IPI:IPI00781372 IPI:IPI00854036 IPI:IPI00854042
RefSeq:NP_058893.2 UniGene:Rn.162247 ProteinModelPortal:Q792H5
SMR:Q792H5 STRING:Q792H5 PhosphoSite:Q792H5 PRIDE:Q792H5
Ensembl:ENSRNOT00000023436 GeneID:29428 KEGG:rno:29428
InParanoid:Q792H5 NextBio:609142 ArrayExpress:Q792H5
Genevestigator:Q792H5 Uniprot:Q792H5
Length = 508
Score = 376 (137.4 bits), Expect = 4.8e-62, Sum P(2) = 4.8e-62
Identities = 73/176 (41%), Positives = 117/176 (66%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRA--SRGCCFVICPSRQEADKA 72
+K+FVGQ+P+ +E +L +F+ + V ++N+++D++ S+GCCFV +R+ A +A
Sbjct: 40 IKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 99
Query: 73 VNACHNKKTLPGASSPLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
NA HN KTLPG P+Q+K AD E + KLFIGM+ K +E ++ +FS +G I+
Sbjct: 100 QNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIE 159
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+ +ILRG S+GCAF+ + T+ A A++A++ MEG S P+VVK+ADT+K+
Sbjct: 160 ECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKD 215
Score = 276 (102.2 bits), Expect = 4.8e-62, Sum P(2) = 4.8e-62
Identities = 53/93 (56%), Positives = 62/93 (66%)
Query: 343 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 402
Q EGP GANLFIYH+PQEFGDQ++ F FG V+SAKVF+DK T +SKCFGFVSY++P
Sbjct: 416 QKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPV 475
Query: 403 SAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 435
SAQ AI MNG R +KPY
Sbjct: 476 SAQAAIQAMNGFQIGMKRLKVQLKRSKNDSKPY 508
Score = 161 (61.7 bits), Expect = 4.1e-36, Sum P(2) = 4.1e-36
Identities = 33/90 (36%), Positives = 50/90 (55%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLF+G V K E + MF F ++E I++ SRGC FV +R A A+ A
Sbjct: 133 KLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDG-LSRGCAFVTFSTRAMAQNAIKA 191
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKL 105
H +T+ G SSP+ VK+AD + ++ + +L
Sbjct: 192 MHQSQTMEGCSSPIVVKFADTQKDKEQRRL 221
>ZFIN|ZDB-GENE-030826-35 [details] [associations]
symbol:celf2 "cugbp, Elav-like family member 2"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030826-35 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:AL935165 EMBL:BX511190 EMBL:CABZ01029785 EMBL:CABZ01029786
EMBL:CABZ01029787 IPI:IPI00994559 Ensembl:ENSDART00000129320
ArrayExpress:E7F7K3 Bgee:E7F7K3 Uniprot:E7F7K3
Length = 585
Score = 382 (139.5 bits), Expect = 5.7e-62, Sum P(2) = 5.7e-62
Identities = 86/227 (37%), Positives = 130/227 (57%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRA--SRGCCFVICPSRQEADKA 72
+K+FVGQ+P+ +E +L +F+ + V ++NI++D++ S+GCCFV +R+ A +A
Sbjct: 115 IKMFVGQIPRSWSEKELKELFEPYGAVYQINILRDRSQNPPQSKGCCFVTFYTRKAALEA 174
Query: 73 VNACHNKKTLPGASSPLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
NA HN KTL G P+Q+K AD E + KLFIGM+ K +E ++ +FS YG I+
Sbjct: 175 QNALHNIKTLTGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPYGQIE 234
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKEXXXX 190
+ +ILRG S+GCAF+ + T+ A A++A++ MEG S P+VVK+ADT+K+
Sbjct: 235 ECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPMVVKFADTQKDKEQR 294
Query: 191 XXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGL 237
N+ S SL G G P Y QA+ S L
Sbjct: 295 RLQQQLAQQMQQLNSASAWGSLTGLT--GLTPQYLALLQQATSSSNL 339
Score = 275 (101.9 bits), Expect = 5.7e-62, Sum P(2) = 5.7e-62
Identities = 53/93 (56%), Positives = 62/93 (66%)
Query: 343 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 402
Q EGP GANLFIYH+PQEFGDQ++ F FG V+SAKVF+DK T +SKCFGFVSY++P
Sbjct: 493 QKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPV 552
Query: 403 SAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 435
SAQ AI MNG R +KPY
Sbjct: 553 SAQAAIQAMNGFQIGMKRLKVQLKRSKNDSKPY 585
>UNIPROTKB|Q8N6W0 [details] [associations]
symbol:CELF5 "CUGBP Elav-like family member 5" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471139 HOVERGEN:HBG107646
KO:K13207 eggNOG:NOG251494 OrthoDB:EOG4RJG30 EMBL:AB209067
EMBL:AC005331 EMBL:AC006505 EMBL:AC010649 EMBL:AC123911
EMBL:BC028101 EMBL:AF329266 EMBL:AF248649 IPI:IPI00171157
IPI:IPI00853054 RefSeq:NP_001166144.1 RefSeq:NP_068757.2
UniGene:Hs.655747 PDB:2DNH PDBsum:2DNH ProteinModelPortal:Q8N6W0
SMR:Q8N6W0 STRING:Q8N6W0 PhosphoSite:Q8N6W0 DMDM:74762534
PRIDE:Q8N6W0 DNASU:60680 Ensembl:ENST00000292672
Ensembl:ENST00000541430 GeneID:60680 KEGG:hsa:60680 UCSC:uc002lxl.2
UCSC:uc010dtj.2 CTD:60680 GeneCards:GC19P003224 HGNC:HGNC:14058
HPA:HPA042012 MIM:612680 neXtProt:NX_Q8N6W0 PharmGKB:PA25429
InParanoid:Q8N6W0 OMA:DGMKDLD PhylomeDB:Q8N6W0
EvolutionaryTrace:Q8N6W0 GenomeRNAi:60680 NextBio:65500
ArrayExpress:Q8N6W0 Bgee:Q8N6W0 CleanEx:HS_BRUNOL5
Genevestigator:Q8N6W0 Uniprot:Q8N6W0
Length = 485
Score = 391 (142.7 bits), Expect = 6.1e-62, Sum P(2) = 6.1e-62
Identities = 78/173 (45%), Positives = 112/173 (64%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
+KLFVGQ+P+H+ E L +F++F + E+ ++KD T +GC F+ +R A KA
Sbjct: 45 IKLFVGQIPRHLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGCAFLTYCARDSAIKAQT 104
Query: 75 ACHNKKTLPGASSPLQVKYADGELER-LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
A H +KTLPG + P+QVK AD E + KLF+GML K SE +V LF +G I +
Sbjct: 105 ALHEQKTLPGMARPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECT 164
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+LRG +SKGCAF+K+ + +A AA+ A++G M G+S LVVK+ADT+KE
Sbjct: 165 VLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKE 217
Score = 260 (96.6 bits), Expect = 6.1e-62, Sum P(2) = 6.1e-62
Identities = 71/195 (36%), Positives = 98/195 (50%)
Query: 243 PPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAV-PGLQYP 301
PP+ G++ P+ G A G P + P + +G V YPA P +
Sbjct: 302 PPLLGTTAVPGLVAPITNGFA--GVVPFPGGH--PALETVYANGLVP--YPAQSPTVAET 355
Query: 302 M-PYPGGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQE 360
+ P G+ + + + +++P +A+S P Q EGP G NLFIYH+PQE
Sbjct: 356 LHPAFSGVQQYTAMYPT-AAITP-IAHSVPQPPPLLQQQ---QREGPEGCNLFIYHLPQE 410
Query: 361 FGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXX 420
FGD EL F FG ++S+KVF+D+AT SKCFGFVS+++PASAQ AI MNG
Sbjct: 411 FGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKR 470
Query: 421 XXXXXXRDNKQNKPY 435
R PY
Sbjct: 471 LKVQLKRPKDPGHPY 485
Score = 182 (69.1 bits), Expect = 9.6e-36, Sum P(2) = 9.6e-36
Identities = 45/128 (35%), Positives = 69/128 (53%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFVG + K +E +L +F+ F ++DE +++ +S+GC FV S EA A++A
Sbjct: 135 KLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDG-SSKGCAFVKFSSHTEAQAAIHA 193
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKL--FIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
H +T+PGASS L VK+AD + ER ++ +G L + ++ FS Y Q
Sbjct: 194 LHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQL--GILTPSLTLPFSPYSAYA--Q 249
Query: 134 ILRGSQQT 141
L Q T
Sbjct: 250 ALMQQQTT 257
>UNIPROTKB|Q7T2T1 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646
KO:K13207 eggNOG:NOG251494 HOGENOM:HOG000004754 EMBL:AY288985
EMBL:AY288986 IPI:IPI00574339 IPI:IPI00587312 RefSeq:NP_989591.1
UniGene:Gga.4919 ProteinModelPortal:Q7T2T1 SMR:Q7T2T1 STRING:Q7T2T1
PRIDE:Q7T2T1 GeneID:374111 KEGG:gga:374111 CTD:10659
InParanoid:Q7T2T1 NextBio:20813628 Uniprot:Q7T2T1
Length = 484
Score = 373 (136.4 bits), Expect = 9.9e-62, Sum P(2) = 9.9e-62
Identities = 73/176 (41%), Positives = 116/176 (65%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRA--SRGCCFVICPSRQEADKA 72
+K FVGQ+P+ +E +L +F+ + V ++N+++D++ S+GCCFV +R+ A +A
Sbjct: 16 IKTFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 75
Query: 73 VNACHNKKTLPGASSPLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
NA HN KTLPG P+Q+K AD E + KLFIGM+ K +E ++ +FS +G I+
Sbjct: 76 QNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIE 135
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+ +ILRG S+GCAF+ + T+ A A++A++ MEG S P+VVK+ADT+K+
Sbjct: 136 ECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKD 191
Score = 276 (102.2 bits), Expect = 9.9e-62, Sum P(2) = 9.9e-62
Identities = 53/93 (56%), Positives = 62/93 (66%)
Query: 343 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 402
Q EGP GANLFIYH+PQEFGDQ++ F FG V+SAKVF+DK T +SKCFGFVSY++P
Sbjct: 392 QKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPV 451
Query: 403 SAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 435
SAQ AI MNG R +KPY
Sbjct: 452 SAQAAIQAMNGFQIGMKRLKVQLKRSKNDSKPY 484
Score = 161 (61.7 bits), Expect = 2.8e-36, Sum P(2) = 2.8e-36
Identities = 33/90 (36%), Positives = 50/90 (55%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLF+G V K E + MF F ++E I++ SRGC FV +R A A+ A
Sbjct: 109 KLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDG-LSRGCAFVTFSTRAMAQNAIKA 167
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKL 105
H +T+ G SSP+ VK+AD + ++ + +L
Sbjct: 168 MHQSQTMEGCSSPIVVKFADTQKDKEQRRL 197
>UNIPROTKB|F1PXQ8 [details] [associations]
symbol:CELF5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13207
GeneTree:ENSGT00560000076837 CTD:60680 OMA:DGMKDLD
EMBL:AAEX03012581 RefSeq:XP_854891.3 Ensembl:ENSCAFT00000030591
GeneID:612072 KEGG:cfa:612072 Uniprot:F1PXQ8
Length = 485
Score = 384 (140.2 bits), Expect = 2.0e-61, Sum P(2) = 2.0e-61
Identities = 77/173 (44%), Positives = 112/173 (64%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
+KLFVGQ+P+++ E L +F++F + E+ ++KD T +GC F+ +R A KA
Sbjct: 45 IKLFVGQIPRNLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGCAFLTYCARDSAIKAQT 104
Query: 75 ACHNKKTLPGASSPLQVKYADGELER-LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
A H +KTLPG + P+QVK AD E + KLF+GML K SE +V LF +G I +
Sbjct: 105 ALHEQKTLPGMARPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECT 164
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+LRG +SKGCAF+K+ + +A AA+ A++G M G+S LVVK+ADT+KE
Sbjct: 165 VLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKE 217
Score = 262 (97.3 bits), Expect = 2.0e-61, Sum P(2) = 2.0e-61
Identities = 71/195 (36%), Positives = 98/195 (50%)
Query: 243 PPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAV-PGLQYP 301
PP+ G++ P+ G A G P + P + +G V YPA P +
Sbjct: 302 PPLLGTTAVPGLVAPITNGFA--GVVPFPGGH--PALETVYANGLVP--YPAQSPTVAET 355
Query: 302 M-PYPGGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQE 360
+ P G+ + + + +++P +A+S P Q EGP G NLFIYH+PQE
Sbjct: 356 LHPAFSGVQQYTAMYPT-AAITP-IAHSVPQPPPLLQQQ---QREGPEGCNLFIYHLPQE 410
Query: 361 FGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXX 420
FGD EL F FG ++S+KVF+D+AT SKCFGFVS+++PASAQ AI MNG
Sbjct: 411 FGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQTAIQAMNGFQIGMKR 470
Query: 421 XXXXXXRDNKQNKPY 435
R PY
Sbjct: 471 LKVQLKRPKDPGHPY 485
Score = 182 (69.1 bits), Expect = 4.7e-36, Sum P(2) = 4.7e-36
Identities = 45/128 (35%), Positives = 69/128 (53%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFVG + K +E +L +F+ F ++DE +++ +S+GC FV S EA A++A
Sbjct: 135 KLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDG-SSKGCAFVKFSSHTEAQAAIHA 193
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKL--FIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
H +T+PGASS L VK+AD + ER ++ +G L + ++ FS Y Q
Sbjct: 194 LHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQL--GILTPSLTLPFSPYSAYA--Q 249
Query: 134 ILRGSQQT 141
L Q T
Sbjct: 250 ALMQQQTT 257
>UNIPROTKB|E2RGA8 [details] [associations]
symbol:CELF3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 OMA:HSAYLNP EMBL:AAEX03011056
Ensembl:ENSCAFT00000020318 Uniprot:E2RGA8
Length = 539
Score = 376 (137.4 bits), Expect = 3.3e-61, Sum P(2) = 3.3e-61
Identities = 73/166 (43%), Positives = 108/166 (65%)
Query: 21 QVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKK 80
Q+P+H+ E L +F++F + E+ +IKDK T +GC F+ +R A KA +A H +K
Sbjct: 90 QIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQK 149
Query: 81 TLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQ 140
TLPG + P+QVK AD E + KLF+GML K ++ +V +F +GTI + +LRG
Sbjct: 150 TLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDG 209
Query: 141 TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
TSKGCAF+K++T +A AA+ ++ + G+S LVVK+ADTEKE
Sbjct: 210 TSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKE 255
Score = 268 (99.4 bits), Expect = 3.3e-61, Sum P(2) = 3.3e-61
Identities = 72/188 (38%), Positives = 87/188 (46%)
Query: 250 GFHGIIPPVNQGNAMRGASPDLSSNMGPRNY-AMPPSGFVGSGYPAVPGLQ-YPMPYPGG 307
G +G P Q +PD G Y A P+ V A G+Q Y YP
Sbjct: 355 GVNGYSPVPTQPTGQ--PAPDALYPNGVHPYPAQSPAAPVDPLQQAYAGMQHYTAAYPAA 412
Query: 308 MLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQEFGDQELG 367
P P ++ A P Q EGP G N+FIYH+PQEF D E+
Sbjct: 413 YSLVAPAFPQPPALV-AQQPPPPPQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEIL 471
Query: 368 NAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXR 427
F FG V+SAKVFVD+AT SKCFGFVS+++PASAQ AI MNG R
Sbjct: 472 QMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKR 531
Query: 428 DNKQNKPY 435
N+PY
Sbjct: 532 PKDANRPY 539
Score = 179 (68.1 bits), Expect = 2.3e-36, Sum P(2) = 2.3e-36
Identities = 37/85 (43%), Positives = 51/85 (60%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFVG + K T+ + MF+ F +DE +++ S+GC FV + EA A+N
Sbjct: 173 KLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDG-TSKGCAFVKFQTHAEAQAAINT 231
Query: 76 CHNKKTLPGASSPLQVKYADGELER 100
H+ +TLPGASS L VK+AD E ER
Sbjct: 232 LHSSRTLPGASSSLVVKFADTEKER 256
Score = 76 (31.8 bits), Expect = 2.8e-14, Sum P(2) = 2.8e-14
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQIL--RGSQQTSKGCAFLKYETKEQALAALEA 162
+FI LP+ +++E+ +F +G + ++ R + Q SK F+ ++ A AA++A
Sbjct: 456 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQ-SKCFGFVSFDNPASAQAAIQA 514
Query: 163 ING 165
+NG
Sbjct: 515 MNG 517
>UNIPROTKB|Q5R995 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9601
"Pongo abelii" [GO:0003723 "RNA binding" evidence=ISS] [GO:0043484
"regulation of RNA splicing" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 CTD:10658 EMBL:CR859496
RefSeq:NP_001125976.1 UniGene:Pab.4290 ProteinModelPortal:Q5R995
SMR:Q5R995 PRIDE:Q5R995 GeneID:100172914 KEGG:pon:100172914
InParanoid:Q5R995 Uniprot:Q5R995
Length = 513
Score = 365 (133.5 bits), Expect = 3.3e-61, Sum P(2) = 3.3e-61
Identities = 72/176 (40%), Positives = 114/176 (64%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRA--SRGCCFVICPSRQEADKA 72
+K+FVGQVP+ +E L +F+++ V E+N+++D++ S+GCCFV +R+ A +A
Sbjct: 43 IKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 102
Query: 73 VNACHNKKTLPGASSPLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
NA HN K LPG P+Q+K AD E + KLFIGM+ K +E ++ +FS +G I+
Sbjct: 103 QNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIE 162
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+ +IL G S+GCA + + T+ A A++A++ MEG S P+VVK+ADT+K+
Sbjct: 163 ECRILWGPDGLSRGCALVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKD 218
Score = 279 (103.3 bits), Expect = 3.3e-61, Sum P(2) = 3.3e-61
Identities = 57/113 (50%), Positives = 66/113 (58%)
Query: 323 PAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVF 382
P + N N Q EGP GANLFIYH+PQEFGDQ+L F FG V+SAKVF
Sbjct: 402 PTLYNQN-LLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVF 460
Query: 383 VDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 435
+DK T +SKCFGFVSY++P SAQ AI MNG R +KPY
Sbjct: 461 IDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSKPY 513
Score = 169 (64.5 bits), Expect = 1.3e-37, Sum P(2) = 1.3e-37
Identities = 47/156 (30%), Positives = 76/156 (48%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLF+G + K TE + MF F ++E I+ SRGC V +R A A+ A
Sbjct: 136 KLFIGMISKKCTENDIRVMFSSFGQIEECRILWGPDG-LSRGCALVTFTTRAMAQTAIKA 194
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 135
H +T+ G SSP+ VK+AD + ++ E K L + + + +SA S++G + L L
Sbjct: 195 MHQAQTMEGCSSPMVVKFADTQKDK-EQKRMAQQLQQQMQQ--ISAA-SVWGNLAGLNTL 250
Query: 136 RGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEG 171
G Q + +L+ + + L ++ H M G
Sbjct: 251 -GPQYLA---LYLQLLQQTASSGNLNTLSSLHPMGG 282
>UNIPROTKB|F1ST15 [details] [associations]
symbol:CELF3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048026 "positive regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0030317 "sperm motility"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007283 GO:GO:0003723 GO:GO:0030317 GO:GO:0048026
GeneTree:ENSGT00560000076837 OMA:HSAYLNP GO:GO:0000381
EMBL:CU457723 Ensembl:ENSSSCT00000007252 Uniprot:F1ST15
Length = 465
Score = 376 (137.4 bits), Expect = 1.1e-60, Sum P(2) = 1.1e-60
Identities = 73/166 (43%), Positives = 108/166 (65%)
Query: 21 QVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKK 80
Q+P+H+ E L +F++F + E+ +IKDK T +GC F+ +R A KA +A H +K
Sbjct: 14 QIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQK 73
Query: 81 TLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQ 140
TLPG + P+QVK AD E + KLF+GML K ++ +V +F +GTI + +LRG
Sbjct: 74 TLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDG 133
Query: 141 TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
TSKGCAF+K++T +A AA+ ++ + G+S LVVK+ADTEKE
Sbjct: 134 TSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKE 179
Score = 263 (97.6 bits), Expect = 1.1e-60, Sum P(2) = 1.1e-60
Identities = 71/189 (37%), Positives = 86/189 (45%)
Query: 250 GFHGIIPPVNQGNAMRGASPDLSSNMGPRNY-AMPPSGFVGSGYPAVPGLQ-YPMPYPGG 307
G +G P Q +PD G Y A P+ V A G+Q Y YP
Sbjct: 279 GVNGYSPVPTQPTGQ--PAPDALYPNGVHPYPAQSPAAPVDPLQQAYAGMQHYTAAYPAA 336
Query: 308 MLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQI-EGPPGANLFIYHIPQEFGDQEL 366
P P ++ P Q EGP G N+FIYH+PQEF D E+
Sbjct: 337 YSLVAPAFPQPPALVAQQPPPPPQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEI 396
Query: 367 GNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXX 426
F FG V+SAKVFVD+AT SKCFGFVS+++PASAQ AI MNG
Sbjct: 397 LQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLK 456
Query: 427 RDNKQNKPY 435
R N+PY
Sbjct: 457 RPKDANRPY 465
Score = 179 (68.1 bits), Expect = 5.0e-36, Sum P(2) = 5.0e-36
Identities = 37/85 (43%), Positives = 51/85 (60%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFVG + K T+ + MF+ F +DE +++ S+GC FV + EA A+N
Sbjct: 97 KLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDG-TSKGCAFVKFQTHAEAQAAINT 155
Query: 76 CHNKKTLPGASSPLQVKYADGELER 100
H+ +TLPGASS L VK+AD E ER
Sbjct: 156 LHSSRTLPGASSSLVVKFADTEKER 180
Score = 76 (31.8 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQIL--RGSQQTSKGCAFLKYETKEQALAALEA 162
+FI LP+ +++E+ +F +G + ++ R + Q SK F+ ++ A AA++A
Sbjct: 382 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQ-SKCFGFVSFDNPASAQAAIQA 440
Query: 163 ING 165
+NG
Sbjct: 441 MNG 443
>UNIPROTKB|H0Y623 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:HSAYLNP
EMBL:AL589765 HGNC:HGNC:11967 ProteinModelPortal:H0Y623
PRIDE:H0Y623 Ensembl:ENST00000420342 Bgee:H0Y623 Uniprot:H0Y623
Length = 466
Score = 375 (137.1 bits), Expect = 2.3e-60, Sum P(2) = 2.3e-60
Identities = 74/166 (44%), Positives = 109/166 (65%)
Query: 21 QVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKK 80
Q+P+H+ E L +F++F + E+ +IKDK T +GC F+ +R A KA +A H +K
Sbjct: 15 QIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQK 74
Query: 81 TLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQ 140
TLPG + P+QVK AD E R + KLF+GML K ++ +V +F +GTI + +LRG
Sbjct: 75 TLPGMNRPIQVKPADSE-SRGDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDG 133
Query: 141 TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
TSKGCAF+K++T +A AA+ ++ + G+S LVVK+ADTEKE
Sbjct: 134 TSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKE 179
Score = 261 (96.9 bits), Expect = 2.3e-60, Sum P(2) = 2.3e-60
Identities = 71/190 (37%), Positives = 86/190 (45%)
Query: 250 GFHGIIPPVNQGNAMRGASPDLSSNMGPRNY-AMPPSGFVGSGYPAVPGLQ-YPMPYPGG 307
G +G P Q +PD G Y A P+ V A G+Q Y YP
Sbjct: 279 GVNGYSPVPTQPTGQ--PAPDALYPNGVHPYPAQSPAAPVDPLQQAYAGMQHYTAAYPAA 336
Query: 308 MLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQI--EGPPGANLFIYHIPQEFGDQE 365
P P ++ P Q EGP G N+FIYH+PQEF D E
Sbjct: 337 YSLVAPAFPQPPALVAQQPPPPPQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSE 396
Query: 366 LGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXXXXXXX 425
+ F FG V+SAKVFVD+AT SKCFGFVS+++PASAQ AI MNG
Sbjct: 397 ILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQL 456
Query: 426 XRDNKQNKPY 435
R N+PY
Sbjct: 457 KRPKDANRPY 466
Score = 179 (68.1 bits), Expect = 1.1e-35, Sum P(2) = 1.1e-35
Identities = 37/85 (43%), Positives = 51/85 (60%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFVG + K T+ + MF+ F +DE +++ S+GC FV + EA A+N
Sbjct: 97 KLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDG-TSKGCAFVKFQTHAEAQAAINT 155
Query: 76 CHNKKTLPGASSPLQVKYADGELER 100
H+ +TLPGASS L VK+AD E ER
Sbjct: 156 LHSSRTLPGASSSLVVKFADTEKER 180
Score = 76 (31.8 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQIL--RGSQQTSKGCAFLKYETKEQALAALEA 162
+FI LP+ +++E+ +F +G + ++ R + Q SK F+ ++ A AA++A
Sbjct: 383 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQ-SKCFGFVSFDNPASAQAAIQA 441
Query: 163 ING 165
+NG
Sbjct: 442 MNG 444
>ZFIN|ZDB-GENE-050208-746 [details] [associations]
symbol:celf5 "cugbp, Elav-like family member 5"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-050208-746 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:BX510913 EMBL:AL929135 EMBL:BX664613 IPI:IPI00633183
Ensembl:ENSDART00000093310 Bgee:F1R633 Uniprot:F1R633
Length = 597
Score = 385 (140.6 bits), Expect = 3.4e-60, Sum P(2) = 3.4e-60
Identities = 77/181 (42%), Positives = 116/181 (64%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
+KLF+GQ+P+++ E L +F++F + E+ ++KD+ T +GC F+ +R+ A KA N
Sbjct: 136 IKLFIGQIPRNLEEKDLKPLFEQFGKIHELTVLKDRYTGMHKGCAFLTYCARESAIKAQN 195
Query: 75 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 134
A H +KTLPG + P+QVK AD E + KLF+GML K +E +V LF YG I++ +
Sbjct: 196 ALHEQKTLPGMTRPIQVKPADSESRGEDRKLFVGMLNKQQTEEDVYRLFEPYGVIEECTV 255
Query: 135 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHKM---------EGSSVPLVVKWADTEK 185
LRG SKGCAF+K+ T +A +A+ A++G M +G+S LVVK+ADT+K
Sbjct: 256 LRGPDGNSKGCAFVKFSTHAEAQSAISALHGSQTMPTGSDSLLPQGASSSLVVKFADTDK 315
Query: 186 E 186
E
Sbjct: 316 E 316
Score = 256 (95.2 bits), Expect = 3.4e-60, Sum P(2) = 3.4e-60
Identities = 50/91 (54%), Positives = 60/91 (65%)
Query: 345 EGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASA 404
EGP G NLFIYH+PQEFGD EL F FG V+S+KVF+D+AT SKCFGFVS+++PASA
Sbjct: 507 EGPEGCNLFIYHLPQEFGDNELMQMFLPFGTVISSKVFMDRATNQSKCFGFVSFDNPASA 566
Query: 405 QNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 435
Q AI MNG R ++PY
Sbjct: 567 QAAIQAMNGFQIGMKRLKVQLKRPKDASRPY 597
Score = 150 (57.9 bits), Expect = 2.6e-31, Sum P(2) = 2.6e-31
Identities = 38/124 (30%), Positives = 63/124 (50%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFVG + K TE + +F+ + +++E +++ S+GC FV + EA A++A
Sbjct: 225 KLFVGMLNKQQTEEDVYRLFEPYGVIEECTVLRGPDGN-SKGCAFVKFSTHAEAQSAISA 283
Query: 76 CHNKKTLP---------GASSPLQVKYADGELERLEHKL--FIGMLPKNVSEAEVSALFS 124
H +T+P GASS L VK+AD + ER ++ +G + ++ FS
Sbjct: 284 LHGSQTMPTGSDSLLPQGASSSLVVKFADTDKERTIRRMQQMVGQF--GIFNPAIALPFS 341
Query: 125 IYGT 128
Y T
Sbjct: 342 TYST 345
>MGI|MGI:1923433 [details] [associations]
symbol:Celf6 "CUGBP, Elav-like family member 6"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1923433 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 eggNOG:NOG251494 HOGENOM:HOG000004754
GeneTree:ENSGT00560000076837 GO:GO:0000381 OrthoDB:EOG4RJG30
CTD:60677 EMBL:AK034216 EMBL:BC052406 EMBL:BC057083 IPI:IPI00222250
IPI:IPI00853853 RefSeq:NP_780444.2 UniGene:Mm.265415
ProteinModelPortal:Q7TN33 SMR:Q7TN33 PhosphoSite:Q7TN33
PRIDE:Q7TN33 Ensembl:ENSMUST00000034840 Ensembl:ENSMUST00000121266
GeneID:76183 KEGG:mmu:76183 UCSC:uc009pxx.1 UCSC:uc009pxy.1
NextBio:344727 Bgee:Q7TN33 CleanEx:MM_BRUNOL6 Genevestigator:Q7TN33
Uniprot:Q7TN33
Length = 460
Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
Identities = 152/427 (35%), Positives = 210/427 (49%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
+KLFVGQ+P+ + E L +F+EF + E+ ++KD+ T +GC F+ +R A KA +
Sbjct: 46 IKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQS 105
Query: 75 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 134
A H +KTLPG + P+QVK A E + KLF+GML K E +V LF +G I++ +
Sbjct: 106 ALHEQKTLPGMNRPIQVKPAASEGRGEDRKLFVGMLGKQQGEEDVRRLFQPFGHIEECTV 165
Query: 135 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKEXXXXXXXX 194
LR TSKGCAF+K+ ++ +A AA++ ++G M G+S LVVK ADT++E
Sbjct: 166 LRSPDGTSKGCAFVKFGSQGEAQAAIQGLHGSRTMTGASSSLVVKLADTDRERALRRMQQ 225
Query: 195 XXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGI 254
HP+ LP+G Y Q + L + P +
Sbjct: 226 MAGQLGAF------HPA---PLPLGACGAYTTAILQHQAAL-LAAAQGPGLGQVAAVAAQ 275
Query: 255 IPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYP-AVPGLQYPMPYPGGMLGHRP 313
+ V + + ++N P P G P V G P G G
Sbjct: 276 MQHVAAFSLVAAPLLPAAANTSPGGNG--PGALPGLPAPMGVNGFGSLTPQSNGQPGSDT 333
Query: 314 LNNS-----PGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQEFGDQELGN 368
L N+ P + A A ++ Q EGP G NLFIYH+PQEFGD EL
Sbjct: 334 LYNNGVSPYPAAYPSAYAPASTAFSQQPSALPQQQREGPEGCNLFIYHLPQEFGDAELIQ 393
Query: 369 AFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRD 428
F FG V+SAKVFVD+AT SKCFGFVS+++P SAQ AI MNG R
Sbjct: 394 TFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTAIQAMNGFQIGMKRLKVQLKRP 453
Query: 429 NKQNKPY 435
N+PY
Sbjct: 454 KDANRPY 460
>RGD|1310451 [details] [associations]
symbol:Celf6 "CUGBP, Elav-like family member 6" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA;ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1310451 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 GO:GO:0000381 OrthoDB:EOG4RJG30
OMA:MQHVAAF IPI:IPI00369994 Ensembl:ENSRNOT00000014450
UCSC:RGD:1310451 Uniprot:D4ABS9
Length = 460
Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
Identities = 163/435 (37%), Positives = 218/435 (50%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
+KLFVGQ+P+ + E L +F+EF + E+ ++KD+ T +GC F+ +R A KA +
Sbjct: 46 IKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQS 105
Query: 75 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 134
A H +KTLPG + P+QVK A E + KLF+GML K E +V LF +G I++ +
Sbjct: 106 ALHEQKTLPGMNRPIQVKPAASEGRGEDRKLFVGMLGKQQGEEDVRRLFQPFGHIEECTV 165
Query: 135 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKEXXXXXXXX 194
LR TSKGCAF+K+ ++ +A AA++ ++G M G+S LVVK ADT++E
Sbjct: 166 LRSPDGTSKGCAFVKFGSQGEAQAAIQGLHGSRTMTGASSSLVVKLADTDRERALRRMQQ 225
Query: 195 XXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYGYQ-------ASGSYGLMQYRL--PPM 245
HP+ LP+G Y Q A+ GL Q M
Sbjct: 226 MAGQLGAF------HPA---PLPLGACGAYTTAILQHQAALLAAAQGPGLGQVAAVAAQM 276
Query: 246 QNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNY-AMP-PSGFVGSGY--PAVPGLQYP 301
Q+ F + P+ A SP S N GP +P P G G G P G
Sbjct: 277 QHVAAFSLVAAPLLPAAA--NTSP--SGN-GPGALPGLPAPMGVNGFGSLNPQTNG---- 327
Query: 302 MPYPGG-MLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQE 360
PG L + L+ P + A A + Q EGP G NLFIYH+PQE
Sbjct: 328 --QPGSDSLYNNGLSPYPAAYPSAYAPVSTAFPQQPSALPQQQREGPEGCNLFIYHLPQE 385
Query: 361 FGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXX 420
FGD EL F FG V+SAKVFVD+AT SKCFGFVS+++P SAQ AI MNG
Sbjct: 386 FGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTAIQAMNGFQIGMKR 445
Query: 421 XXXXXXRDNKQNKPY 435
R N+PY
Sbjct: 446 LKVQLKRPKDANRPY 460
>UNIPROTKB|E2RJG5 [details] [associations]
symbol:CELF6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 OMA:MQHVAAF EMBL:AAEX03016277
EMBL:AAEX03016278 Ensembl:ENSCAFT00000028069 Uniprot:E2RJG5
Length = 427
Score = 327 (120.2 bits), Expect = 1.3e-57, Sum P(2) = 1.3e-57
Identities = 64/155 (41%), Positives = 99/155 (63%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
+KLFVGQ+P+ + E L +F+EF + E+ ++KD+ T +GC F+ +R A KA +
Sbjct: 7 IKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQS 66
Query: 75 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 134
A H +KTLPG + P+QVK A E + KLF+GML K E +V LF +G I++ +
Sbjct: 67 ALHEQKTLPGMNRPIQVKPAASEGRGEDRKLFVGMLGKQQGEEDVRRLFQPFGHIEECTV 126
Query: 135 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHKM 169
LR TSKGCAF+K+ ++ +A AA+++++G M
Sbjct: 127 LRSPDGTSKGCAFVKFGSQGEAQAAIQSLHGSRTM 161
Score = 283 (104.7 bits), Expect = 1.3e-57, Sum P(2) = 1.3e-57
Identities = 77/198 (38%), Positives = 98/198 (49%)
Query: 241 RLPPMQNQPGFH-GIIPPVNQGNAMRGASPDLSSNMG-PRNYAMPPSGFVGSGYPAV-PG 297
R P +QPG G +P + + G P G P + + +G S YPA PG
Sbjct: 238 RPPAATSQPGGGPGSLPGLPAPIGVNGFGPLTPQTNGQPGSDTLYNNGL--SPYPAQSPG 295
Query: 298 LQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHI 357
+ P+ + H P + +P V+ + P Q EGP G NLFIYH+
Sbjct: 296 VADPLQQAYAGMHHYAAY--PSAYAP-VSTAFPQQSSALPQQ---QREGPEGCNLFIYHL 349
Query: 358 PQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXX 417
PQEFGD EL F FG V+SAKVFVD+AT SKCFGFVS+++P SAQ AI MNG
Sbjct: 350 PQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTAIQAMNGFQIG 409
Query: 418 XXXXXXXXXRDNKQNKPY 435
R N+PY
Sbjct: 410 MKRLKVQLKRPKDANRPY 427
Score = 134 (52.2 bits), Expect = 3.6e-36, Sum P(2) = 3.6e-36
Identities = 29/82 (35%), Positives = 48/82 (58%)
Query: 104 KLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQ-TSKGCAFLKYETKEQALAALEA 162
KLF+G +P+ + E ++ LF +G I +L +L+ KGCAFL Y ++ AL A A
Sbjct: 8 KLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSA 67
Query: 163 INGKHKMEGSSVPLVVKWADTE 184
++ + + G + P+ VK A +E
Sbjct: 68 LHEQKTLPGMNRPIQVKPAASE 89
Score = 77 (32.2 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 19/62 (30%), Positives = 32/62 (51%)
Query: 352 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 411
LF+ + ++ G++++ FQ FG + V + G SK FV + S AQ AI +
Sbjct: 97 LFVGMLGKQQGEEDVRRLFQPFGHIEECTV-LRSPDGTSKGCAFVKFGSQGEAQAAIQSL 155
Query: 412 NG 413
+G
Sbjct: 156 HG 157
Score = 56 (24.8 bits), Expect = 9.0e-34, Sum P(2) = 9.0e-34
Identities = 31/89 (34%), Positives = 41/89 (46%)
Query: 246 QNQPGFHGIIPPVNQGNAMRGASPDLSS---NMGPRNYAMPPSGFVGSGYPAVPGLQYPM 302
Q + G G+ P + A+ GA+ L N+GP SG V + PA+P + P
Sbjct: 170 QGEAG--GVGPGFSSPRAI-GAAQGLMGTALNLGPGL----GSGLVTAASPALP--RAPR 220
Query: 303 PYPG-GMLGHRPLNNSPGSVSPAVANSNP 330
P G G G RP +SP PA A S P
Sbjct: 221 PGAGRGGAGPRP--DSPTPRPPA-ATSQP 246
>WB|WBGene00001340 [details] [associations]
symbol:etr-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0010171
"body morphogenesis" evidence=IMP] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0018991 "oviposition" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0040002 "collagen and
cuticulin-based cuticle development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] [GO:0061199 "striated muscle contraction involved in
embryonic body morphogenesis" evidence=IMP] [GO:0008340
"determination of adult lifespan" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008340
GO:GO:0009792 GO:GO:0018991 GO:GO:0006915 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011
GO:GO:0048477 GO:GO:0003676 GO:GO:0040002 KO:K13207
HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837 EMBL:FO081419
UniGene:Cel.5079 GeneID:173401 KEGG:cel:CELE_T01D1.2
UCSC:T01D1.2a.1 CTD:173401 NextBio:879497 RefSeq:NP_001122631.1
ProteinModelPortal:A8DYS0 SMR:A8DYS0 IntAct:A8DYS0 STRING:A8DYS0
EnsemblMetazoa:T01D1.2f.1 EnsemblMetazoa:T01D1.2f.2
EnsemblMetazoa:T01D1.2f.3 EnsemblMetazoa:T01D1.2f.4
EnsemblMetazoa:T01D1.2f.5 EnsemblMetazoa:T01D1.2f.6
WormBase:T01D1.2f InParanoid:A8DYS0 ArrayExpress:A8DYS0
Uniprot:A8DYS0
Length = 588
Score = 359 (131.4 bits), Expect = 1.3e-57, Sum P(2) = 1.3e-57
Identities = 87/261 (33%), Positives = 135/261 (51%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
+K+FVGQ+P+ E +F+++ V NI++DK+T+AS+GCCFV R++A +A
Sbjct: 55 IKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQG 114
Query: 75 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 134
A HN K + G P+Q+K AD E R E KLFIG L K +E + +F+ +G I+D +
Sbjct: 115 ALHNIKVIEGMHHPVQMKPADTE-NRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSV 173
Query: 135 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKEXXXXXXXX 194
LR S+GCAF+ + + A+ A + ++ MEG S PLVVK+ADT+K+
Sbjct: 174 LRDQDGKSRGCAFVTFTNRSCAVVATKEMHHSQTMEGCSAPLVVKFADTQKDKDVKTKSM 233
Query: 195 XXXXXNNLPNADSQHPSLFGAL-PMGYAPPYNGYGYQASGSY-GLMQYRLPPMQNQPGFH 252
P + SL L P G YQA S L+ + Q
Sbjct: 234 ITGSGAGSPKGGAA--SLLQNLNPALLQQLGGGQNYQAVASLLSLINGQQGQQQQHQQQQ 291
Query: 253 GIIPPVNQGNAMRGASPDLSS 273
++ + GN + G +P +++
Sbjct: 292 NVLGILGTGNPLLG-NPAMAA 311
Score = 260 (96.6 bits), Expect = 1.3e-57, Sum P(2) = 1.3e-57
Identities = 47/70 (67%), Positives = 57/70 (81%)
Query: 344 IEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPAS 403
++GP GANLFIYH+PQ+FGD +L N F FG +LSAKVF+DK T +SKCFGFVSYE+ S
Sbjct: 497 VKGPDGANLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQS 556
Query: 404 AQNAIAMMNG 413
A NAI+ MNG
Sbjct: 557 ATNAISAMNG 566
Score = 149 (57.5 bits), Expect = 8.7e-32, Sum P(2) = 8.7e-32
Identities = 39/125 (31%), Positives = 64/125 (51%)
Query: 61 VICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVS 120
V+ P + +NA K T P ++ V + E + K+F+G +P+ +E +
Sbjct: 18 VVVPIAEST--VINA---KDTTPSTAADNDVSPSPSEPDTDAIKMFVGQIPRQWNETDCR 72
Query: 121 ALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179
LF YG++ ILR S Q SKGC F+ + ++ A+ A A++ +EG P+ +K
Sbjct: 73 RLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMHHPVQMK 132
Query: 180 WADTE 184
ADTE
Sbjct: 133 PADTE 137
Score = 54 (24.1 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 16/61 (26%), Positives = 29/61 (47%)
Query: 352 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 411
LFI + ++ ++ L F FG + V D+ G S+ FV++ + + A A M
Sbjct: 144 LFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQ-DGKSRGCAFVTFTNRSCAVVATKEM 202
Query: 412 N 412
+
Sbjct: 203 H 203
>UNIPROTKB|F1SHM1 [details] [associations]
symbol:CELF6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 GO:GO:0000381 OMA:MQHVAAF
EMBL:CU012037 Ensembl:ENSSSCT00000002157 Uniprot:F1SHM1
Length = 482
Score = 592 (213.5 bits), Expect = 1.4e-57, P = 1.4e-57
Identities = 158/446 (35%), Positives = 221/446 (49%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
+KLFVGQ+P+ + E L +F+EF + E+ ++KD+ T +GC F+ +R A KA +
Sbjct: 46 IKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQS 105
Query: 75 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 134
A H +KTLPG + P+QVK A E + KLF+GML K E +V LF +G I++ +
Sbjct: 106 ALHEQKTLPGMNRPIQVKPAASEGRGEDRKLFVGMLGKQQGEEDVRRLFQPFGHIEECTV 165
Query: 135 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKEXXXXXXXX 194
LR TSKGCAF+K+ ++ +A AA+++++G M G+S LVVK ADT++E
Sbjct: 166 LRSPDGTSKGCAFVKFGSQGEAQAAIQSLHGSRTMAGASSSLVVKLADTDRERALRRMQQ 225
Query: 195 XXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYGYQ--------ASG-SYGLMQYRLPPM 245
HP+ LP+G Y Q A G G + M
Sbjct: 226 MAGQLGAF------HPA---PLPLGACGAYTTAILQHQAALLAAAQGPGLGPVAAVAAQM 276
Query: 246 QNQPGFH----GIIPPVNQGNAMRGASPD----LSSNMGPRNYA-MPP--SGFVGSGYPA 294
Q+ F ++P N+ G P L + +G + + P +G GS
Sbjct: 277 QHVAAFSLVAAPLLPAAAAANSPPGGGPGTLPGLPAPIGVNGFGPLTPQTNGQPGSDSLY 336
Query: 295 VPGLQ-YPMPYPGG----MLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPG 349
GL YP PG + +++ + A A + Q EGP G
Sbjct: 337 NNGLSPYPAQSPGVADPLQQAYAGMHHYAAAYPSAYAPVSTTFSQQPSALPQQQREGPEG 396
Query: 350 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 409
NLFIYH+PQEFGD EL F FG V+SAKVFVD+AT SKCFGFVS+++P SAQ AI
Sbjct: 397 CNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTAIQ 456
Query: 410 MMNGCXXXXXXXXXXXXRDNKQNKPY 435
MNG R N+PY
Sbjct: 457 AMNGFQIGMKRLKVQLKRPKDANRPY 482
>UNIPROTKB|E1B8K2 [details] [associations]
symbol:CELF6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 GO:GO:0000381 OMA:MQHVAAF
EMBL:DAAA02027998 IPI:IPI00694457 ProteinModelPortal:E1B8K2
Ensembl:ENSBTAT00000018735 Uniprot:E1B8K2
Length = 482
Score = 590 (212.7 bits), Expect = 2.2e-57, P = 2.2e-57
Identities = 158/446 (35%), Positives = 221/446 (49%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
+KLFVGQ+P+ + E L +F+EF + E+ ++KD+ T +GC F+ +R A KA +
Sbjct: 46 IKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQS 105
Query: 75 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 134
A H +KTLPG + P+QVK A E + KLF+GML K E +V LF +G I++ +
Sbjct: 106 ALHEQKTLPGMNRPIQVKPAASEGRGEDRKLFVGMLGKQQGEEDVRRLFQPFGHIEECTV 165
Query: 135 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKEXXXXXXXX 194
LR TSKGCAF+K+ ++ +A AA+++++G M G+S LVVK ADT++E
Sbjct: 166 LRSPDGTSKGCAFVKFGSQGEAQAAIQSLHGSRTMAGASSSLVVKLADTDRERALRRMQQ 225
Query: 195 XXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYGYQ--------ASG-SYGLMQYRLPPM 245
HP+ LP+G Y Q A G G + M
Sbjct: 226 MAGQLGAF------HPA---PLPLGACGAYTTAILQHQAALLAAAQGPGLGPVAAVAAQM 276
Query: 246 QNQPGFH----GIIPPVNQGNAMRGASPD----LSSNMGPRNYA-MPP--SGFVGSGYPA 294
Q+ F ++P N+ G P L + +G + + P +G GS
Sbjct: 277 QHVAAFSLVAAPLLPAAAAANSPPGGGPGTLPGLPAPIGVNGFGPLTPQTNGQPGSDSLY 336
Query: 295 VPGLQ-YPMPYPGG----MLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPG 349
GL YP PG + +++ + A A + Q EGP G
Sbjct: 337 NNGLSPYPAQSPGVADPLQQAYAGMHHYAAAYPSAYAPVSTTFPQQPSALPQQQREGPEG 396
Query: 350 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 409
NLFIYH+PQEFGD EL F FG V+SAKVFVD+AT SKCFGFVS+++P SAQ AI
Sbjct: 397 CNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTAIQ 456
Query: 410 MMNGCXXXXXXXXXXXXRDNKQNKPY 435
MNG R N+PY
Sbjct: 457 AMNGFQIGMKRLKVQLKRPKDANRPY 482
>UNIPROTKB|Q96J87 [details] [associations]
symbol:CELF6 "CUGBP Elav-like family member 6" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=NAS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IDA] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0005737 "cytoplasm" evidence=NAS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107646
KO:K13207 eggNOG:NOG251494 HOGENOM:HOG000004754 GO:GO:0000381
OrthoDB:EOG4RJG30 EMBL:AF401233 EMBL:AF425606 EMBL:AK131098
EMBL:AK294382 EMBL:AK296004 EMBL:AC009690 EMBL:BC030835
EMBL:BC033838 IPI:IPI00171103 IPI:IPI00793692 IPI:IPI00909307
IPI:IPI00922660 RefSeq:NP_001166155.1 RefSeq:NP_001166156.1
RefSeq:NP_443072.3 UniGene:Hs.348342 PDB:2DGQ PDBsum:2DGQ
ProteinModelPortal:Q96J87 SMR:Q96J87 STRING:Q96J87
PhosphoSite:Q96J87 DMDM:74760888 PRIDE:Q96J87
Ensembl:ENST00000287202 Ensembl:ENST00000395258
Ensembl:ENST00000543764 Ensembl:ENST00000567083
Ensembl:ENST00000569547 GeneID:60677 KEGG:hsa:60677 UCSC:uc002auh.2
UCSC:uc002auj.2 CTD:60677 GeneCards:GC15M072577 H-InvDB:HIX0012406
HGNC:HGNC:14059 MIM:612681 neXtProt:NX_Q96J87 PharmGKB:PA25430
InParanoid:Q96J87 OMA:MQHVAAF PhylomeDB:Q96J87
EvolutionaryTrace:Q96J87 GenomeRNAi:60677 NextBio:65492
ArrayExpress:Q96J87 Bgee:Q96J87 CleanEx:HS_BRUNOL6
Genevestigator:Q96J87 Uniprot:Q96J87
Length = 481
Score = 589 (212.4 bits), Expect = 2.8e-57, P = 2.8e-57
Identities = 158/445 (35%), Positives = 220/445 (49%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
+KLFVGQ+P+ + E L +F+EF + E+ ++KD+ T +GC F+ +R A KA +
Sbjct: 46 IKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQS 105
Query: 75 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 134
A H +KTLPG + P+QVK A E + KLF+GML K E +V LF +G I++ +
Sbjct: 106 ALHEQKTLPGMNRPIQVKPAASEGRGEDRKLFVGMLGKQQGEEDVRRLFQPFGHIEECTV 165
Query: 135 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKEXXXXXXXX 194
LR TSKGCAF+K+ ++ +A AA+ ++G M G+S LVVK ADT++E
Sbjct: 166 LRSPDGTSKGCAFVKFGSQGEAQAAIRGLHGSRTMAGASSSLVVKLADTDRERALRRMQQ 225
Query: 195 XXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYGYQ--------ASG-SYGLMQYRLPPM 245
+ + HP+ LP+G Y Q A G G + M
Sbjct: 226 MAG------HLGAFHPA---PLPLGACGAYTTAILQHQAALLAAAQGPGLGPVAAVAAQM 276
Query: 246 QNQPGFHGIIPPVNQGNAMR-------GASPDLSSNMGPRNYA-MPP--SGFVGSGYPAV 295
Q+ F + P+ A G P L + +G + + P +G GS
Sbjct: 277 QHVAAFSLVAAPLLPAAAANSPPGSGPGTLPGLPAPIGVNGFGPLTPQTNGQPGSDTLYN 336
Query: 296 PGLQ-YPMPYPGG----MLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGA 350
GL YP PG + +++ + A A + Q EGP G
Sbjct: 337 NGLSPYPAQSPGVADPLQQAYAGMHHYAAAYPSAYAPVSTAFPQQPSALPQQQREGPEGC 396
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
NLFIYH+PQEFGD EL F FG V+SAKVFVD+AT SKCFGFVS+++P SAQ AI
Sbjct: 397 NLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTAIQA 456
Query: 411 MNGCXXXXXXXXXXXXRDNKQNKPY 435
MNG R N+PY
Sbjct: 457 MNGFQIGMKRLKVQLKRPKDANRPY 481
>WB|WBGene00006807 [details] [associations]
symbol:unc-75 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IDA] [GO:0032224 "positive regulation of
synaptic transmission, cholinergic" evidence=IMP] [GO:0032230
"positive regulation of synaptic transmission, GABAergic"
evidence=IMP] [GO:0016071 "mRNA metabolic process" evidence=ISS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0007271 "synaptic
transmission, cholinergic" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0016071 GO:GO:0000166 GO:GO:0016607 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0032230 GO:GO:0007271 HSSP:P19339
KO:K13207 GeneTree:ENSGT00560000076837 GO:GO:0032224 EMBL:Z81473
EMBL:AY342388 PIR:T19347 RefSeq:NP_492958.3 UniGene:Cel.20354
ProteinModelPortal:G5EE68 SMR:G5EE68 IntAct:G5EE68
EnsemblMetazoa:C17D12.2 GeneID:182722 KEGG:cel:CELE_C17D12.2
CTD:182722 WormBase:C17D12.2 OMA:SHAQTEN NextBio:918598
Uniprot:G5EE68
Length = 514
Score = 359 (131.4 bits), Expect = 3.3e-57, Sum P(2) = 3.3e-57
Identities = 77/179 (43%), Positives = 113/179 (63%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
+KLFVGQ+P+++ E L +F++F + E I+KDK T +GC F+ R A +
Sbjct: 29 IKLFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKDKYTGMHKGCAFLTYCHRDSAVRCQA 88
Query: 75 ACHNKKTLPGASSPLQVKYADGEL------ERLEHK-LFIGMLPKNVSEAEVSALFSIYG 127
H++KTLPG + +QVK AD + ++++ K LFIGML K SE EV ALF+ +G
Sbjct: 89 TLHDQKTLPGMNRAMQVKPADTDSRPASPKDKMDDKKLFIGMLSKQQSEDEVRALFATFG 148
Query: 128 TIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+ ++ +LRG+ SKGCAF+KY+ A A+ A++G M G+S LVVK+ADTEKE
Sbjct: 149 ELDEVTVLRGADGASKGCAFVKYKHGLDAHMAISALHGSQTMPGASSSLVVKYADTEKE 207
Score = 247 (92.0 bits), Expect = 3.3e-57, Sum P(2) = 3.3e-57
Identities = 48/93 (51%), Positives = 60/93 (64%)
Query: 343 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 402
++ GP G NLFIYH+PQEFGD EL F FG ++SAKVFVD+AT SKCFGFVSY++
Sbjct: 422 EVLGPDGCNLFIYHLPQEFGDAELIQMFAPFGHIVSAKVFVDRATNQSKCFGFVSYDNIH 481
Query: 403 SAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 435
S+Q AI MNG R +++PY
Sbjct: 482 SSQAAITAMNGFQIGMKRLKVQLKRPRNESRPY 514
Score = 184 (69.8 bits), Expect = 5.8e-34, Sum P(2) = 5.8e-34
Identities = 48/139 (34%), Positives = 73/139 (52%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLF+G + K +E ++ A+F F +DEV +++ AS+GC FV +A A++A
Sbjct: 125 KLFIGMLSKQQSEDEVRALFATFGELDEVTVLRG-ADGASKGCAFVKYKHGLDAHMAISA 183
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKLF-----IGML-PKNVSEAEVSALFSIYGTI 129
H +T+PGASS L VKYAD E ER ++ +GML P V++ V ++ Y +
Sbjct: 184 LHGSQTMPGASSSLVVKYADTEKERQNRRMQQMAAQMGMLNPMLVNQ--VGMQYNAYQQV 241
Query: 130 KDLQILRGSQQTSKGCAFL 148
Q L A+L
Sbjct: 242 LQQQSLAAQTNAMASAAYL 260
>ZFIN|ZDB-GENE-110408-50 [details] [associations]
symbol:celf3b "cugbp, Elav-like family member 3b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-110408-50 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:BX005277 EMBL:CABZ01052818 EMBL:CABZ01052819 EMBL:CABZ01052820
EMBL:CABZ01052821 EMBL:CABZ01052822 IPI:IPI00506596
Ensembl:ENSDART00000024206 Uniprot:E7F293
Length = 442
Score = 354 (129.7 bits), Expect = 4.2e-57, Sum P(2) = 4.2e-57
Identities = 70/173 (40%), Positives = 111/173 (64%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
+KLF+GQ+P+++ E L +F+++ + E+ +IKDK T +GC F+ +R+ A KA +
Sbjct: 7 IKLFIGQIPRNLEEKDLKPIFEQYGKIYELTVIKDKYTGMHKGCAFLTYCARESAIKAQS 66
Query: 75 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 134
A H G + P+QVK AD E + KLF+GML K S+ +V +F +G I + +
Sbjct: 67 ALHYSSGYSGMNRPIQVKPADSEGRGEDRKLFVGMLGKQQSDEDVRKIFEPFGGIDECTV 126
Query: 135 LRGSQQTSK-GCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
LRG TSK GCAF+K+++ +A +A+ +++G + G+S LVVK+ADTEKE
Sbjct: 127 LRGPDGTSKAGCAFVKFQSHSEAQSAINSLHGSRTLPGASSSLVVKFADTEKE 179
Score = 251 (93.4 bits), Expect = 4.2e-57, Sum P(2) = 4.2e-57
Identities = 49/90 (54%), Positives = 58/90 (64%)
Query: 346 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQ 405
GP G N+FIYH+PQEF D E+ F FG V+SAKVFVD+AT SKCFGFVS+++PASAQ
Sbjct: 353 GPEGCNVFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPASAQ 412
Query: 406 NAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 435
AI MNG R N+PY
Sbjct: 413 TAIQAMNGFQIGMKRLKVQLKRPKDANRPY 442
Score = 175 (66.7 bits), Expect = 4.9e-34, Sum P(2) = 4.9e-34
Identities = 35/85 (41%), Positives = 50/85 (58%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFVG + K ++ + +F+ F +DE +++ + GC FV S EA A+N+
Sbjct: 96 KLFVGMLGKQQSDEDVRKIFEPFGGIDECTVLRGPDGTSKAGCAFVKFQSHSEAQSAINS 155
Query: 76 CHNKKTLPGASSPLQVKYADGELER 100
H +TLPGASS L VK+AD E ER
Sbjct: 156 LHGSRTLPGASSSLVVKFADTEKER 180
Score = 71 (30.1 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 17/63 (26%), Positives = 35/63 (55%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQIL--RGSQQTSKGCAFLKYETKEQALAALEA 162
+FI LP+ +++E+ +F +G + ++ R + Q SK F+ ++ A A++A
Sbjct: 359 VFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQ-SKCFGFVSFDNPASAQTAIQA 417
Query: 163 ING 165
+NG
Sbjct: 418 MNG 420
>UNIPROTKB|B4DHA8 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107646
IPI:IPI00853277 UniGene:Hs.435976 UniGene:Hs.600908 HGNC:HGNC:14015
EMBL:AC015961 EMBL:AC090386 EMBL:AC093332 EMBL:AC129908
EMBL:AK295009 ProteinModelPortal:B4DHA8 STRING:B4DHA8
Ensembl:ENST00000588597 UCSC:uc002lai.2 Bgee:B4DHA8 Uniprot:B4DHA8
Length = 454
Score = 405 (147.6 bits), Expect = 3.8e-56, Sum P(2) = 3.8e-56
Identities = 80/172 (46%), Positives = 115/172 (66%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
+KLF+GQ+P+++ E L +F+EF + E+ ++KD+ T +GC F+ R+ A KA +
Sbjct: 54 IKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQS 113
Query: 75 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 134
A H +KTLPG + P+QVK AD E R + KLF+GML K SE +V LF +G I++ I
Sbjct: 114 ALHEQKTLPGMNRPIQVKPADSE-SRGDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTI 172
Query: 135 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
LRG SKGCAF+KY + +A AA+ A++G M G+S LVVK+ADT+KE
Sbjct: 173 LRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKE 224
Score = 191 (72.3 bits), Expect = 3.8e-56, Sum P(2) = 3.8e-56
Identities = 36/52 (69%), Positives = 40/52 (76%)
Query: 343 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFG 394
Q EGP G NLFIYH+PQEFGD EL F FG V+S+KVFVD+AT SKCFG
Sbjct: 402 QREGPEGCNLFIYHLPQEFGDAELMQMFLPFGNVISSKVFVDRATNQSKCFG 453
Score = 170 (64.9 bits), Expect = 8.7e-26, Sum P(2) = 8.7e-26
Identities = 36/90 (40%), Positives = 53/90 (58%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFVG + K +E + +F+ F ++E I++ S+GC FV S EA A+NA
Sbjct: 142 KLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGN-SKGCAFVKYSSHAEAQAAINA 200
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKL 105
H +T+PGASS L VK+AD + ER ++
Sbjct: 201 LHGSQTMPGASSSLVVKFADTDKERTMRRM 230
Score = 45 (20.9 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTI 129
LFI LP+ +AE+ +F +G +
Sbjct: 411 LFIYHLPQEFGDAELMQMFLPFGNV 435
>MGI|MGI:1932407 [details] [associations]
symbol:Celf4 "CUGBP, Elav-like family member 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006376 "mRNA splice site
selection" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0048026
"positive regulation of mRNA splicing, via spliceosome"
evidence=ISO] [GO:0090394 "negative regulation of excitatory
postsynaptic membrane potential" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1932407 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:COG0724 GO:GO:0000380
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
GO:GO:0042835 GO:GO:0006376 GeneTree:ENSGT00560000076837
GO:GO:0000381 OrthoDB:EOG4RJG30 CTD:56853 ChiTaRS:CELF4
EMBL:AF515450 EMBL:AK044072 EMBL:AK048427 EMBL:AK051458
EMBL:AC121094 EMBL:AC144938 EMBL:AC153142 EMBL:BC048405
EMBL:BC052744 EMBL:AF314173 IPI:IPI00222845 IPI:IPI00330819
IPI:IPI00470036 IPI:IPI00757837 IPI:IPI00853687 IPI:IPI00853900
IPI:IPI00853926 RefSeq:NP_001139764.1 RefSeq:NP_001139765.1
RefSeq:NP_001139766.1 RefSeq:NP_001139767.1 RefSeq:NP_001167545.1
RefSeq:NP_573458.2 UniGene:Mm.266435 ProteinModelPortal:Q7TSY6
SMR:Q7TSY6 STRING:Q7TSY6 PhosphoSite:Q7TSY6 PaxDb:Q7TSY6
PRIDE:Q7TSY6 Ensembl:ENSMUST00000025117 Ensembl:ENSMUST00000115816
GeneID:108013 KEGG:mmu:108013 UCSC:uc008ehk.2 UCSC:uc008ehl.2
UCSC:uc012ban.1 UCSC:uc012bao.1 UCSC:uc012bap.1 UCSC:uc012baq.1
OMA:SAMESIN NextBio:359881 Bgee:Q7TSY6 CleanEx:MM_BRUNOL4
Genevestigator:Q7TSY6 GO:GO:0090394 Uniprot:Q7TSY6
Length = 486
Score = 382 (139.5 bits), Expect = 1.8e-53, Sum P(3) = 1.8e-53
Identities = 80/182 (43%), Positives = 116/182 (63%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
+KLF+GQ+P+++ E L +F+EF + E+ ++KD+ T +GC F+ R+ A KA +
Sbjct: 54 IKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQS 113
Query: 75 ACHNKKTLPGASSPLQVKYADGE-------LER---LEHKLFIGMLPKNVSEAEVSALFS 124
A H +KTLPG + P+QVK AD E L + + KLF+GML K SE +V LF
Sbjct: 114 ALHEQKTLPGMNRPIQVKPADSESRGGSSCLRQPPSQDRKLFVGMLNKQQSEDDVRRLFE 173
Query: 125 IYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 184
+G I++ ILRG SKGCAF+KY + +A AA+ A++G M G+S LVVK+ADT+
Sbjct: 174 AFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTD 233
Query: 185 KE 186
KE
Sbjct: 234 KE 235
Score = 170 (64.9 bits), Expect = 2.2e-22, Sum P(3) = 2.2e-22
Identities = 36/90 (40%), Positives = 53/90 (58%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFVG + K +E + +F+ F ++E I++ S+GC FV S EA A+NA
Sbjct: 153 KLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGN-SKGCAFVKYSSHAEAQAAINA 211
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKL 105
H +T+PGASS L VK+AD + ER ++
Sbjct: 212 LHGSQTMPGASSSLVVKFADTDKERTMRRM 241
Score = 111 (44.1 bits), Expect = 1.8e-53, Sum P(3) = 1.8e-53
Identities = 22/34 (64%), Positives = 23/34 (67%)
Query: 343 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRV 376
Q EGP G NL IYH+PQEFGD EL F FG V
Sbjct: 414 QREGPEGCNLLIYHLPQEFGDAELMQMFLPFGFV 447
Score = 89 (36.4 bits), Expect = 1.8e-53, Sum P(3) = 1.8e-53
Identities = 19/43 (44%), Positives = 23/43 (53%)
Query: 393 FGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 435
FGFVS+++PASAQ AI MNG R N+PY
Sbjct: 444 FGFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY 486
Score = 37 (18.1 bits), Expect = 8.3e-15, Sum P(3) = 8.3e-15
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTI 129
L I LP+ +AE+ +F +G +
Sbjct: 423 LLIYHLPQEFGDAELMQMFLPFGFV 447
Score = 37 (18.1 bits), Expect = 1.6e-09, Sum P(3) = 1.6e-09
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 147 FLKYETKEQALAALEAING 165
F+ ++ A A++A+NG
Sbjct: 446 FVSFDNPASAQTAIQAMNG 464
>DICTYBASE|DDB_G0270634 [details] [associations]
symbol:DDB_G0270634 "putative splicing regulator"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0270634 EMBL:AAFI02000005 GO:GO:0045335
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
RefSeq:XP_646268.1 ProteinModelPortal:Q55D63
EnsemblProtists:DDB0233675 GeneID:8617224 KEGG:ddi:DDB_G0270634
InParanoid:Q55D63 OMA:CAFITFS ProtClustDB:CLSZ2497105
Uniprot:Q55D63
Length = 368
Score = 380 (138.8 bits), Expect = 5.4e-53, Sum P(2) = 5.4e-53
Identities = 73/171 (42%), Positives = 112/171 (65%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
+FVG +P M E + +F +F + ++ IIKDK T S+GC F+ +++EAD A+N
Sbjct: 20 VFVGHIPSSMNEEGVSQIFNKFGNILDITIIKDKRTNVSKGCAFITFSTKEEADNALNTT 79
Query: 77 HNKKT-LPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 135
+ T L + PLQVKY+D E+E++E KLFIGML + E ++ LF YG I+DL I+
Sbjct: 80 NESGTFLENMNKPLQVKYSDNEIEKMERKLFIGMLGTS-DEDQIRILFGNYGIIEDLNIV 138
Query: 136 RGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
R KG F+KY T++++ AL I+GKH + GS++P++VK+ADTE++
Sbjct: 139 REKDGKPKGYGFIKYSTRDESENALREIDGKHTLPGSNLPIIVKFADTERQ 189
Score = 186 (70.5 bits), Expect = 5.4e-53, Sum P(2) = 5.4e-53
Identities = 46/122 (37%), Positives = 63/122 (51%)
Query: 293 PAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGAN- 351
P G M G G+R P +V+ + N Q + P +N
Sbjct: 230 PFFYGQNSQMSQAMGNNGYRGYQQQP-NVNFGMMQGNQAFDYNQQQQQQQQQQQPNESND 288
Query: 352 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 411
LFIY++P +GD+EL F +G V+S+KVF+DK T SKCFGFVSY++ SA AI +
Sbjct: 289 LFIYYLPFTYGDEELKQLFAPYGNVISSKVFIDKNTQQSKCFGFVSYDNTQSAIAAIQEL 348
Query: 412 NG 413
NG
Sbjct: 349 NG 350
Score = 132 (51.5 bits), Expect = 1.0e-21, Sum P(2) = 1.0e-21
Identities = 29/93 (31%), Positives = 55/93 (59%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLF+G + E Q+ +F + +++++NI+++K + +G F+ +R E++ A+
Sbjct: 108 KLFIGMLGTS-DEDQIRILFGNYGIIEDLNIVREKDGKP-KGYGFIKYSTRDESENALRE 165
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKLFIG 108
K TLPG++ P+ VK+AD ER + K +G
Sbjct: 166 IDGKHTLPGSNLPIIVKFAD--TERQKRKKLLG 196
Score = 97 (39.2 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 24/77 (31%), Positives = 43/77 (55%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQIL--RGSQQTSKGCAFLKYETKEQALAALEA 162
LFI LP + E+ LF+ YG + ++ + +QQ SK F+ Y+ + A+AA++
Sbjct: 289 LFIYYLPFTYGDEELKQLFAPYGNVISSKVFIDKNTQQ-SKCFGFVSYDNTQSAIAAIQE 347
Query: 163 INGKHKMEGSSVPLVVK 179
+NG+ +EG + + K
Sbjct: 348 LNGR-AIEGKKLKVNFK 363
Score = 47 (21.6 bits), Expect = 2.2e-38, Sum P(2) = 2.2e-38
Identities = 18/61 (29%), Positives = 25/61 (40%)
Query: 222 PPYNGYG-YQASGSYGLMQYRLPPMQNQ--PGFHGIIPPVNQG---NAMRGASPDLSSNM 275
PP N + YQ + Q + QNQ P F+G ++Q N RG + N
Sbjct: 200 PPQNPFNFYQQNQQQQQQQQQQQQQQNQYQPFFYGQNSQMSQAMGNNGYRGYQQQPNVNF 259
Query: 276 G 276
G
Sbjct: 260 G 260
Score = 41 (19.5 bits), Expect = 9.3e-38, Sum P(2) = 9.3e-38
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 224 YNGYGYQASGSYGLMQ 239
Y GY Q + ++G+MQ
Sbjct: 248 YRGYQQQPNVNFGMMQ 263
>UNIPROTKB|F1S8E8 [details] [associations]
symbol:CELF5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 OMA:DGMKDLD EMBL:FP016150
EMBL:FP565386 Ensembl:ENSSSCT00000014721 Uniprot:F1S8E8
Length = 420
Score = 299 (110.3 bits), Expect = 1.8e-52, Sum P(2) = 1.8e-52
Identities = 63/136 (46%), Positives = 86/136 (63%)
Query: 52 TRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLP 111
T +GC F+ +R A KA A H +KTLPG + P+QVK AD E + KLF+GML
Sbjct: 17 THTHKGCAFLTYCARDSAIKAQTALHEQKTLPGMARPIQVKPADSESRGGDRKLFVGMLN 76
Query: 112 KNVSEAEVSALFSIYGTIKDLQILRGSQQTSK-GCAFLKYETKEQALAALEAINGKHKME 170
K SE +V LF +G I + +LRG +SK GCAF+K+ + +A AA+ A++G M
Sbjct: 77 KQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKAGCAFVKFSSHTEAQAAIHALHGSQTMP 136
Query: 171 GSSVPLVVKWADTEKE 186
G+S LVVK+ADT+KE
Sbjct: 137 GASSSLVVKFADTDKE 152
Score = 262 (97.3 bits), Expect = 1.8e-52, Sum P(2) = 1.8e-52
Identities = 71/195 (36%), Positives = 98/195 (50%)
Query: 243 PPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAV-PGLQYP 301
PP+ G++ P+ G A G P + P + +G V YPA P +
Sbjct: 237 PPLLGTAAVPGLVAPITNGFA--GVVPFPGGH--PALETVYANGLVP--YPAQSPTVAET 290
Query: 302 M-PYPGGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQE 360
+ P G+ + + + +++P +A+S P Q EGP G NLFIYH+PQE
Sbjct: 291 LHPAFSGVQQYTAMYPT-AAITP-IAHSVPQPPPLLQQQ---QREGPEGCNLFIYHLPQE 345
Query: 361 FGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXX 420
FGD EL F FG ++S+KVF+D+AT SKCFGFVS+++PASAQ AI MNG
Sbjct: 346 FGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQTAIQAMNGFQIGMKR 405
Query: 421 XXXXXXRDNKQNKPY 435
R PY
Sbjct: 406 LKVQLKRPKDPGHPY 420
Score = 183 (69.5 bits), Expect = 9.2e-37, Sum P(2) = 9.2e-37
Identities = 44/128 (34%), Positives = 67/128 (52%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFVG + K +E +L +F+ F ++DE +++ + GC FV S EA A++A
Sbjct: 69 KLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKAGCAFVKFSSHTEAQAAIHA 128
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKL--FIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
H +T+PGASS L VK+AD + ER ++ +G L + ++ FS Y Q
Sbjct: 129 LHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQL--GILTPSLTLPFSPYSAYA--Q 184
Query: 134 ILRGSQQT 141
L Q T
Sbjct: 185 ALMQQQTT 192
>UNIPROTKB|F1NXF6 [details] [associations]
symbol:BRUNOL6 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00560000076837 GO:GO:0000381
EMBL:AADN02051058 EMBL:AADN02051059 IPI:IPI00819127
Ensembl:ENSGALT00000040113 OMA:PIHEINI Uniprot:F1NXF6
Length = 476
Score = 354 (129.7 bits), Expect = 7.3e-51, Sum P(3) = 7.3e-51
Identities = 76/179 (42%), Positives = 112/179 (62%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
+KLFVGQ+P+++ E+ L +F+EF + E+ ++KD+ T +GC F+ +R A KA +
Sbjct: 48 IKLFVGQIPRNLEESDLKPLFEEFGRIYELTVLKDRFTGMHKGCAFLTYCARDSALKAQS 107
Query: 75 ACHNKKTLPGASSPLQVKY------ADGE-LERLEHKLFIGMLPKNVSEAEVSALFSIYG 127
A H +KTLPG S ++ AD L + KLF+GML K SE +V LF +G
Sbjct: 108 ALHEQKTLPGVSDGRELGRGLGWPPADSSALPPEDRKLFVGMLGKQQSEDDVRRLFEPFG 167
Query: 128 TIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
I++ ILRG SKGCAF+KY + +A AA+ +++G M G+S LVVK+ADT+KE
Sbjct: 168 QIEECTILRGPDGASKGCAFVKYSSHAEAQAAISSLHGSQTMPGASSSLVVKFADTDKE 226
Score = 166 (63.5 bits), Expect = 2.8e-22, Sum P(3) = 2.8e-22
Identities = 35/85 (41%), Positives = 52/85 (61%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFVG + K +E + +F+ F ++E I++ AS+GC FV S EA A+++
Sbjct: 144 KLFVGMLGKQQSEDDVRRLFEPFGQIEECTILRGPDG-ASKGCAFVKYSSHAEAQAAISS 202
Query: 76 CHNKKTLPGASSPLQVKYADGELER 100
H +T+PGASS L VK+AD + ER
Sbjct: 203 LHGSQTMPGASSSLVVKFADTDKER 227
Score = 120 (47.3 bits), Expect = 7.3e-51, Sum P(3) = 7.3e-51
Identities = 45/147 (30%), Positives = 60/147 (40%)
Query: 236 GLMQYRLPPMQNQ---PGFHGI-IPPVNQGNAMRGASP-DLSSNMGPRNYAMPPSGFVGS 290
GL+ L P PG +P + + G SP +N P + + +G
Sbjct: 296 GLVAAPLTPSSGTSTPPGISTAPVPSIATPIGVNGFSPLPPQTNGQPTSETIYTNGI--H 353
Query: 291 GYPAV-PGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPG 349
YPA P + P+ + H + P + A A + Q EGP G
Sbjct: 354 PYPAQSPTVADPLQQAYAGMQHYAV---PAAYPTAYAPISQAFPQQAPIIPQQQREGPEG 410
Query: 350 ANLFIYHIPQEFGDQELGNAFQAFGRV 376
NLFIYH+PQEFGD EL F FG V
Sbjct: 411 CNLFIYHLPQEFGDAELTQMFLPFGFV 437
Score = 83 (34.3 bits), Expect = 7.3e-51, Sum P(3) = 7.3e-51
Identities = 18/43 (41%), Positives = 22/43 (51%)
Query: 393 FGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 435
FGFVS+++P SAQ AI MNG R N+PY
Sbjct: 434 FGFVSFDNPTSAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY 476
Score = 45 (20.9 bits), Expect = 1.4e-14, Sum P(3) = 1.4e-14
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTI 129
LFI LP+ +AE++ +F +G +
Sbjct: 413 LFIYHLPQEFGDAELTQMFLPFGFV 437
Score = 41 (19.5 bits), Expect = 1.3e-42, Sum P(3) = 1.3e-42
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 205 ADSQHPSLFGALPMGYAPPYNGYGYQA 231
A QH ++ A P YAP + QA
Sbjct: 371 AGMQHYAVPAAYPTAYAPISQAFPQQA 397
Score = 41 (19.5 bits), Expect = 2.5e-10, Sum P(3) = 2.5e-10
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 147 FLKYETKEQALAALEAING 165
F+ ++ A AA++A+NG
Sbjct: 436 FVSFDNPTSAQAAIQAMNG 454
>UNIPROTKB|F1MD42 [details] [associations]
symbol:F1MD42 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 EMBL:DAAA02019657 EMBL:DAAA02019658
EMBL:DAAA02019659 EMBL:DAAA02019660 EMBL:DAAA02019661
IPI:IPI00713955 ProteinModelPortal:F1MD42
Ensembl:ENSBTAT00000029023 OMA:PAQSPTM Uniprot:F1MD42
Length = 489
Score = 281 (104.0 bits), Expect = 8.3e-48, Sum P(2) = 8.3e-48
Identities = 68/177 (38%), Positives = 103/177 (58%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
+KLFVGQ+P+++ E L +F++F + E+ ++KD T +G + R ++A
Sbjct: 49 IKLFVGQIPRNLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGLRWWTHIRRDNPEEAPA 108
Query: 75 ACHNKKTLPGASSPLQVKYA----DGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
A ++ L G P VK GE +R KLF+GML K SE +V LF +G I
Sbjct: 109 AAGGQREL-GLQRPGGVKLPPSSPSGEGDR---KLFVGMLNKQQSEEDVLRLFQPFGVID 164
Query: 131 DLQILRGSQQTSK-GCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+ +LRG +SK GCAF+K+ + +A AA+ A++G M G+S LVVK+ADT+KE
Sbjct: 165 ECTVLRGPDGSSKAGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKE 221
Score = 260 (96.6 bits), Expect = 8.3e-48, Sum P(2) = 8.3e-48
Identities = 71/195 (36%), Positives = 98/195 (50%)
Query: 243 PPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAV-PGLQYP 301
PP+ G++ P+ G A G P + P + +G V YPA P +
Sbjct: 306 PPLLGTATVPGLVAPITNGFA--GVVPFPGGH--PALETVYANGLVP--YPAQSPTVAET 359
Query: 302 M-PYPGGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQE 360
+ P G+ + + + +++P +A+S P Q EGP G NLFIYH+PQE
Sbjct: 360 LHPAFSGVQQYTAMYPT-AAITP-IAHSVPQPPPLLQQQ---QREGPEGCNLFIYHLPQE 414
Query: 361 FGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXX 420
FGD EL F FG ++S+KVF+D+AT SKCFGFVS+++PASAQ AI MNG
Sbjct: 415 FGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQTAIQAMNGFQIGMKR 474
Query: 421 XXXXXXRDNKQNKPY 435
R PY
Sbjct: 475 LKVQLKRPKDPGHPY 489
Score = 183 (69.5 bits), Expect = 8.0e-36, Sum P(2) = 8.0e-36
Identities = 44/128 (34%), Positives = 67/128 (52%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFVG + K +E +L +F+ F ++DE +++ + GC FV S EA A++A
Sbjct: 138 KLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKAGCAFVKFSSHTEAQAAIHA 197
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKL--FIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
H +T+PGASS L VK+AD + ER ++ +G L + ++ FS Y Q
Sbjct: 198 LHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQL--GILTPSLTLPFSPYSAYA--Q 253
Query: 134 ILRGSQQT 141
L Q T
Sbjct: 254 ALMQQQTT 261
Score = 83 (34.3 bits), Expect = 2.4e-25, Sum P(2) = 2.4e-25
Identities = 20/69 (28%), Positives = 37/69 (53%)
Query: 95 DGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILR----GSQQTSKGCAFLKY 150
DG + KLF+G +P+N+ E ++ LF +G I +L +L+ G + + ++
Sbjct: 41 DGTKDLDAIKLFVGQIPRNLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGLRWWTHIRR 100
Query: 151 ETKEQALAA 159
+ E+A AA
Sbjct: 101 DNPEEAPAA 109
>FB|FBgn0264001 [details] [associations]
symbol:bru-3 "bruno-3" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0017148 "negative regulation of translation" evidence=ISA]
[GO:0043234 "protein complex" evidence=IDA] [GO:0042803 "protein
homodimerization activity" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0043234 GO:GO:0042803 EMBL:AE014296 GO:GO:0017148
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339
KO:K13207 GeneTree:ENSGT00560000076837 FlyBase:FBgn0264001
UniGene:Dm.13624 GeneID:39527 KEGG:dme:Dmel_CG12478 CTD:39527
GenomeRNAi:39527 NextBio:814113 EMBL:AY060398 RefSeq:NP_729923.1
SMR:Q9VU91 IntAct:Q9VU91 MINT:MINT-899406 STRING:Q9VU91
EnsemblMetazoa:FBtr0330343 UCSC:CG12478-RA InParanoid:Q9VU91
OMA:HALNGEY Uniprot:Q9VU91
Length = 422
Score = 277 (102.6 bits), Expect = 7.2e-45, Sum P(2) = 7.2e-45
Identities = 64/152 (42%), Positives = 81/152 (53%)
Query: 284 PSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQ 343
P+G + A PGL P P+PG + P ++ P +A P
Sbjct: 275 PNGDAATLQHAFPGL--P-PFPG-VAFPAVYGQFPQALPPPLAAVAPTQREDFLMFPGCS 330
Query: 344 IEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPAS 403
I GP G NLFIYH+PQEFGD EL F FG V+S+KVF+D+AT SKCFGFVS+++PAS
Sbjct: 331 ISGPEGCNLFIYHLPQEFGDAELMQMFLPFGNVISSKVFIDRATNQSKCFGFVSFDNPAS 390
Query: 404 AQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 435
AQ AI MNG R ++PY
Sbjct: 391 AQAAIQAMNGFQIGMKRLKVQLKRPKDASRPY 422
Score = 234 (87.4 bits), Expect = 7.2e-45, Sum P(2) = 7.2e-45
Identities = 52/128 (40%), Positives = 79/128 (61%)
Query: 64 PSRQEADKAVNACHNKKTLPGA---SSPLQVKYADGEL--ERLEHKLFIGMLPKNVSEAE 118
P + A + +CH+ P + LQ+K A+ E E L+ KLF+GML K +E +
Sbjct: 11 PKVEFAQQVTVSCHHPLIPPAIKLMNRALQLKPAENESRSEHLDRKLFVGMLSKQQTEDD 70
Query: 119 VSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178
V +F +GTI++ ILRG SKGCAF+K+ ++++A +A+ ++G M G+S LVV
Sbjct: 71 VRQIFHPFGTIEECTILRGPDGASKGCAFVKFGSQQEAQSAITNLHGSQTMPGASSSLVV 130
Query: 179 KWADTEKE 186
K+ADTEKE
Sbjct: 131 KYADTEKE 138
Score = 190 (71.9 bits), Expect = 3.4e-12, P = 3.4e-12
Identities = 75/269 (27%), Positives = 109/269 (40%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFVG + K TE + +F F ++E I++ AS+GC FV S+QEA A+
Sbjct: 56 KLFVGMLSKQQTEDDVRQIFHPFGTIEECTILRGPDG-ASKGCAFVKFGSQQEAQSAITN 114
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ-- 133
H +T+PGASS L VKYAD E ER ++ N+ V FS YG Q
Sbjct: 115 LHGSQTMPGASSSLVVKYADTEKERQIRRMQQMAGHMNLLNPFVFNQFSPYGAYAQQQQQ 174
Query: 134 -ILRGSQQTSKGCAFLKYETKEQALAAL--EAINGKHK---MEGSSVPLVVKWADT---E 184
L + T+ G A Y ALA +NG + + ++P A+T +
Sbjct: 175 AALMAAAATAPGSA-AAYMNPMAALATQIPHGLNGTGQPPSLPSPTMPNFNMGANTPNGQ 233
Query: 185 KEXXXXXXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPP 244
N Q + F P+ P G +G +Q+ P
Sbjct: 234 PGGAAAAAAAAAAADGVFTNGIPQ--TAFPGHPLHLTIPPQGL---PNGDAATLQHAFPG 288
Query: 245 MQNQPGFHGIIPPVNQGNAMRGASPDLSS 273
+ P F G+ P G + P L++
Sbjct: 289 L---PPFPGVAFPAVYGQFPQALPPPLAA 314
>UNIPROTKB|F1NYP4 [details] [associations]
symbol:CELF4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 OMA:EDSEKNG EMBL:AADN02067588
EMBL:AADN02067589 EMBL:AADN02067590 EMBL:AADN02067591
EMBL:AADN02067592 EMBL:AADN02067593 EMBL:AADN02067594
EMBL:AADN02067595 EMBL:AADN02067596 IPI:IPI00590965
Ensembl:ENSGALT00000003800 Uniprot:F1NYP4
Length = 361
Score = 266 (98.7 bits), Expect = 4.7e-44, Sum P(2) = 4.7e-44
Identities = 53/93 (56%), Positives = 61/93 (65%)
Query: 343 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 402
Q EGP G NLFIYH+PQEFGD EL F FG V+S+KVFVD+AT SKCFGFVS+++PA
Sbjct: 269 QREGPEGCNLFIYHLPQEFGDAELMQMFLPFGNVISSKVFVDRATNQSKCFGFVSFDNPA 328
Query: 403 SAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 435
SAQ AI MNG R N+PY
Sbjct: 329 SAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY 361
Score = 215 (80.7 bits), Expect = 4.7e-44, Sum P(2) = 4.7e-44
Identities = 43/85 (50%), Positives = 58/85 (68%)
Query: 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALE 161
+ KLF+GML K SE +V LF +G I++ ILRG SKGCAF+KY + +A AA+
Sbjct: 8 DRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAIN 67
Query: 162 AINGKHKMEGSSVPLVVKWADTEKE 186
A++G M G+S LVVK+ADT+KE
Sbjct: 68 ALHGSQTMPGASSSLVVKFADTDKE 92
Score = 170 (64.9 bits), Expect = 2.5e-39, Sum P(2) = 2.5e-39
Identities = 36/90 (40%), Positives = 53/90 (58%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFVG + K +E + +F+ F ++E I++ S+GC FV S EA A+NA
Sbjct: 10 KLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGN-SKGCAFVKYSSHAEAQAAINA 68
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKL 105
H +T+PGASS L VK+AD + ER ++
Sbjct: 69 LHGSQTMPGASSSLVVKFADTDKERTMRRM 98
Score = 80 (33.2 bits), Expect = 2.1e-14, Sum P(2) = 2.1e-14
Identities = 20/63 (31%), Positives = 35/63 (55%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQIL--RGSQQTSKGCAFLKYETKEQALAALEA 162
LFI LP+ +AE+ +F +G + ++ R + Q SK F+ ++ A AA++A
Sbjct: 278 LFIYHLPQEFGDAELMQMFLPFGNVISSKVFVDRATNQ-SKCFGFVSFDNPASAQAAIQA 336
Query: 163 ING 165
+NG
Sbjct: 337 MNG 339
>UNIPROTKB|F1P5J4 [details] [associations]
symbol:BRUNOL6 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 EMBL:AADN02051058 EMBL:AADN02051059
IPI:IPI00591656 Ensembl:ENSGALT00000003051 Uniprot:F1P5J4
Length = 354
Score = 266 (98.7 bits), Expect = 2.0e-43, Sum P(2) = 2.0e-43
Identities = 53/93 (56%), Positives = 60/93 (64%)
Query: 343 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 402
Q EGP G NLFIYH+PQEFGD EL F FG V+SAKVFVD+AT SKCFGFVS+++P
Sbjct: 262 QREGPEGCNLFIYHLPQEFGDAELTQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPT 321
Query: 403 SAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 435
SAQ AI MNG R N+PY
Sbjct: 322 SAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY 354
Score = 209 (78.6 bits), Expect = 2.0e-43, Sum P(2) = 2.0e-43
Identities = 42/85 (49%), Positives = 58/85 (68%)
Query: 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALE 161
+ KLF+GML K SE +V LF +G I++ ILRG SKGCAF+KY + +A AA+
Sbjct: 2 DRKLFVGMLGKQQSEDDVRRLFEPFGQIEECTILRGPDGASKGCAFVKYSSHAEAQAAIS 61
Query: 162 AINGKHKMEGSSVPLVVKWADTEKE 186
+++G M G+S LVVK+ADT+KE
Sbjct: 62 SLHGSQTMPGASSSLVVKFADTDKE 86
Score = 166 (63.5 bits), Expect = 6.5e-39, Sum P(2) = 6.5e-39
Identities = 35/85 (41%), Positives = 52/85 (61%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFVG + K +E + +F+ F ++E I++ AS+GC FV S EA A+++
Sbjct: 4 KLFVGMLGKQQSEDDVRRLFEPFGQIEECTILRGPDG-ASKGCAFVKYSSHAEAQAAISS 62
Query: 76 CHNKKTLPGASSPLQVKYADGELER 100
H +T+PGASS L VK+AD + ER
Sbjct: 63 LHGSQTMPGASSSLVVKFADTDKER 87
Score = 83 (34.3 bits), Expect = 2.8e-14, Sum P(2) = 2.8e-14
Identities = 20/63 (31%), Positives = 36/63 (57%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQIL--RGSQQTSKGCAFLKYETKEQALAALEA 162
LFI LP+ +AE++ +F +G + ++ R + Q SK F+ ++ A AA++A
Sbjct: 271 LFIYHLPQEFGDAELTQMFLPFGNVISAKVFVDRATNQ-SKCFGFVSFDNPTSAQAAIQA 329
Query: 163 ING 165
+NG
Sbjct: 330 MNG 332
>RGD|1307630 [details] [associations]
symbol:Celf4 "CUGBP, Elav-like family member 4" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1307630 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0000380 GO:GO:0048026 GO:GO:0006376
GeneTree:ENSGT00560000076837 GO:GO:0000381 IPI:IPI00870309
Ensembl:ENSRNOT00000061151 ArrayExpress:F1M6I9 Uniprot:F1M6I9
Length = 355
Score = 262 (97.3 bits), Expect = 2.0e-43, Sum P(2) = 2.0e-43
Identities = 52/93 (55%), Positives = 60/93 (64%)
Query: 343 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 402
Q EGP G NL IYH+PQEFGD EL F FG V+S+KVFVD+AT SKCFGFVS+++PA
Sbjct: 263 QREGPEGCNLLIYHLPQEFGDAELMQMFLPFGNVISSKVFVDRATNQSKCFGFVSFDNPA 322
Query: 403 SAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 435
SAQ AI MNG R N+PY
Sbjct: 323 SAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY 355
Score = 213 (80.0 bits), Expect = 2.0e-43, Sum P(2) = 2.0e-43
Identities = 43/83 (51%), Positives = 57/83 (68%)
Query: 104 KLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAI 163
KLF+GML K SE +V LF +G I++ ILRG SKGCAF+KY + +A AA+ A+
Sbjct: 2 KLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINAL 61
Query: 164 NGKHKMEGSSVPLVVKWADTEKE 186
+G M G+S LVVK+ADT+KE
Sbjct: 62 HGSQTMPGASSSLVVKFADTDKE 84
Score = 170 (64.9 bits), Expect = 6.5e-39, Sum P(2) = 6.5e-39
Identities = 36/90 (40%), Positives = 53/90 (58%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFVG + K +E + +F+ F ++E I++ S+GC FV S EA A+NA
Sbjct: 2 KLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGN-SKGCAFVKYSSHAEAQAAINA 60
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKL 105
H +T+PGASS L VK+AD + ER ++
Sbjct: 61 LHGSQTMPGASSSLVVKFADTDKERTMRRM 90
Score = 70 (29.7 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
Identities = 18/63 (28%), Positives = 33/63 (52%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQIL--RGSQQTSKGCAFLKYETKEQALAALEA 162
L I LP+ +AE+ +F +G + ++ R + Q SK F+ ++ A A++A
Sbjct: 272 LLIYHLPQEFGDAELMQMFLPFGNVISSKVFVDRATNQ-SKCFGFVSFDNPASAQTAIQA 330
Query: 163 ING 165
+NG
Sbjct: 331 MNG 333
>UNIPROTKB|E1BIM7 [details] [associations]
symbol:LOC100851458 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0006376 "mRNA splice site selection" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0006376
GeneTree:ENSGT00560000076837 OMA:TMRNEEL EMBL:DAAA02035244
IPI:IPI00924044 ProteinModelPortal:E1BIM7
Ensembl:ENSBTAT00000011768 ArrayExpress:E1BIM7 Uniprot:E1BIM7
Length = 397
Score = 276 (102.2 bits), Expect = 2.5e-43, Sum P(2) = 2.5e-43
Identities = 53/93 (56%), Positives = 62/93 (66%)
Query: 343 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 402
Q EGP GANLFIYH+PQEFGDQ++ F FG V+SAKVF+DK T +SKCFGFVSY++P
Sbjct: 305 QKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPV 364
Query: 403 SAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 435
SAQ AI MNG R +KPY
Sbjct: 365 SAQAAIQAMNGFQIGMKRLKVQLKRSKNDSKPY 397
Score = 215 (80.7 bits), Expect = 2.5e-43, Sum P(2) = 2.5e-43
Identities = 43/101 (42%), Positives = 67/101 (66%)
Query: 88 PLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGC 145
P+Q+K AD E + KLFIGM+ K +E ++ +FS +G I++ +ILRG S+GC
Sbjct: 4 PIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGC 63
Query: 146 AFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
AF+ + T+ A A++A++ MEG S P+VVK+ADT+K+
Sbjct: 64 AFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKD 104
Score = 161 (61.7 bits), Expect = 1.2e-37, Sum P(2) = 1.2e-37
Identities = 33/90 (36%), Positives = 50/90 (55%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLF+G V K E + MF F ++E I++ SRGC FV +R A A+ A
Sbjct: 22 KLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDG-LSRGCAFVTFSTRAMAQNAIKA 80
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKL 105
H +T+ G SSP+ VK+AD + ++ + +L
Sbjct: 81 MHQSQTMEGCSSPIVVKFADTQKDKEQRRL 110
>UNIPROTKB|B4DIB6 [details] [associations]
symbol:CELF2 "cDNA FLJ51739, highly similar to Homo sapiens
CUG triplet repeat, RNA binding protein 2 (CUGBP2), transcript
variant 2, mRNA" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006376
"mRNA splice site selection" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC026887 HOVERGEN:HBG107646 HOGENOM:HOG000004754
OrthoDB:EOG4N8R4X GO:GO:0006376 EMBL:AL157704 EMBL:AL136320
UniGene:Hs.309288 HGNC:HGNC:2550 ChiTaRS:CELF2 EMBL:AL136369
EMBL:AL138769 EMBL:AL162408 EMBL:AK295511 IPI:IPI01011300
SMR:B4DIB6 STRING:B4DIB6 Ensembl:ENST00000537122 UCSC:uc010qbo.1
Uniprot:B4DIB6
Length = 403
Score = 276 (102.2 bits), Expect = 4.0e-43, Sum P(2) = 4.0e-43
Identities = 53/93 (56%), Positives = 62/93 (66%)
Query: 343 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 402
Q EGP GANLFIYH+PQEFGDQ++ F FG V+SAKVF+DK T +SKCFGFVSY++P
Sbjct: 311 QKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPV 370
Query: 403 SAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 435
SAQ AI MNG R +KPY
Sbjct: 371 SAQAAIQAMNGFQIGMKRLKVQLKRSKNDSKPY 403
Score = 215 (80.7 bits), Expect = 4.0e-43, Sum P(2) = 4.0e-43
Identities = 43/101 (42%), Positives = 67/101 (66%)
Query: 88 PLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGC 145
P+Q+K AD E + KLFIGM+ K +E ++ +FS +G I++ +ILRG S+GC
Sbjct: 4 PIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGC 63
Query: 146 AFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
AF+ + T+ A A++A++ MEG S P+VVK+ADT+K+
Sbjct: 64 AFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKD 104
Score = 161 (61.7 bits), Expect = 1.9e-37, Sum P(2) = 1.9e-37
Identities = 33/90 (36%), Positives = 50/90 (55%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLF+G V K E + MF F ++E I++ SRGC FV +R A A+ A
Sbjct: 22 KLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDG-LSRGCAFVTFSTRAMAQNAIKA 80
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKL 105
H +T+ G SSP+ VK+AD + ++ + +L
Sbjct: 81 MHQSQTMEGCSSPIVVKFADTQKDKEQRRL 110
>UNIPROTKB|A6H776 [details] [associations]
symbol:BRUNOL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0090394 "negative regulation of excitatory postsynaptic
membrane potential" evidence=IEA] [GO:0048026 "positive regulation
of mRNA splicing, via spliceosome" evidence=IEA] [GO:0006376 "mRNA
splice site selection" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000380 HOVERGEN:HBG107646
KO:K13207 GO:GO:0048026 eggNOG:NOG251494 HOGENOM:HOG000004754
GO:GO:0006376 GeneTree:ENSGT00560000076837 GO:GO:0000381 CTD:56853
OMA:EDSEKNG EMBL:DAAA02056370 EMBL:DAAA02056371 EMBL:DAAA02056372
EMBL:DAAA02056373 EMBL:DAAA02056374 EMBL:DAAA02056375
EMBL:DAAA02056376 EMBL:DAAA02056377 EMBL:DAAA02056378 EMBL:BC146142
IPI:IPI00907335 RefSeq:NP_001092538.1 UniGene:Bt.62140 SMR:A6H776
Ensembl:ENSBTAT00000006498 GeneID:535177 KEGG:bta:535177
InParanoid:A6H776 NextBio:20876649 Uniprot:A6H776
Length = 475
Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
Identities = 139/444 (31%), Positives = 200/444 (45%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
+KLF+GQ+P+++ E L +F+EF + E+ ++KD+ T +GC F+ R+ A KA +
Sbjct: 54 IKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQS 113
Query: 75 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 134
A H +KTLPG + P+QVK AD E R + KLF+GML K SE +V LF +G I++ I
Sbjct: 114 ALHEQKTLPGMNRPIQVKPADSE-SRGDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTI 172
Query: 135 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKEXXXXXXXX 194
LRG SKGCAF+KY + +A AA+ A++G M G+S LVVK+ADT+KE
Sbjct: 173 LRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTMRRMQQ 232
Query: 195 XXXXXNNLPNADSQHPSLFGALPMGYAPPYNGY-GYQASGSY--GLMQYRLPPMQNQPGF 251
N + +GA A G Y + + MQ
Sbjct: 233 MAGQMGMF-NPMAIPFGAYGAYAQALMQQQAALMASVAQGGYLNPMAAFAAAQMQQMAAL 291
Query: 252 H--GI----IPPVNQGNAMRG----ASPDLSSNMGPRNYA-MPPSGFVGSGYPAVPGL-- 298
+ G+ + P + G+ G A P + S +G + +PP +G PA +
Sbjct: 292 NMNGLAAAPMTPTSGGSTPPGITAPAVPSIPSPIGVNGFTGLPPQA---NGQPAAEAVFA 348
Query: 299 QYPMPYPG-GMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHI 357
PYP PL + V + P PP I
Sbjct: 349 NGIHPYPAQSPTAADPLQQAYAGVQQY---AGPAAYPAAYGQISQAFPQPPPM------I 399
Query: 358 PQEFGDQELG-NAF-----QAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 411
PQ+ + G N F Q FG ++F+ FGFVS+++PASAQ AI M
Sbjct: 400 PQQQREGPEGCNLFIYHLPQEFGDAELMQMFLP--------FGFVSFDNPASAQTAIQAM 451
Query: 412 NGCXXXXXXXXXXXXRDNKQNKPY 435
NG R N+PY
Sbjct: 452 NGFQIGMKRLKVQLKRPKDANRPY 475
>UNIPROTKB|Q4R535 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9541
"Macaca fascicularis" [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 GO:GO:0048026 EMBL:AB169709
ProteinModelPortal:Q4R535 SMR:Q4R535 Uniprot:Q4R535
Length = 474
Score = 444 (161.4 bits), Expect = 6.6e-42, P = 6.6e-42
Identities = 139/444 (31%), Positives = 201/444 (45%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
+KLF+GQ+P+++ E L +F+EF + E+ ++KD+ T +GC F+ R+ A KA +
Sbjct: 54 IKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQS 113
Query: 75 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 134
A H +KTLPG + P+QVK AD E R + KLF+GML K SE +V LF +G I++ I
Sbjct: 114 ALHEQKTLPGMNRPIQVKPADSE-SRGDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTI 172
Query: 135 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKEXXXXXXXX 194
LRG SKGCAF+KY + +A AA+ A++G M G+S LVVK+ADT+KE
Sbjct: 173 LRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTMRRMQQ 232
Query: 195 XXXXXNNLPNADSQHPSLFGALPMGYAPPYNGY-GYQASGSY--GLMQYRLPPMQNQPGF 251
N + +GA A G Y + + MQ
Sbjct: 233 MAGQMGMF-NPMAIPFGAYGAYAQALMQQQAALMASVAQGGYLNPMAAFAAAQMQQMAAL 291
Query: 252 H--GI----IPPVNQGNAMRG----ASPDLSSNMGPRNYA-MPPSGFVGSGYPAVPGL-- 298
+ G+ + P + G+ G A P + S +G + +PP +G PA +
Sbjct: 292 NMNGLAAAPMTPTSGGSTPPGITAPAVPSIPSPIGVNGFTGLPPQA---NGQPAAEAVFA 348
Query: 299 QYPMPYPG-GMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHI 357
PYP PL + V + P + PP I
Sbjct: 349 NGIHPYPAQSPTAADPLQQAYAGVQQYAGPAYPAAYGQISQAFP---QPPP-------MI 398
Query: 358 PQEFGDQELG-NAF-----QAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 411
PQ+ + G N F Q FG ++F+ FGFVS+++PASAQ AI M
Sbjct: 399 PQQQREGPEGCNLFIYHLPQEFGDAELMQMFLP--------FGFVSFDNPASAQTAIQAM 450
Query: 412 NGCXXXXXXXXXXXXRDNKQNKPY 435
NG R N+PY
Sbjct: 451 NGFQIGMKRLKVQLKRPKDANRPY 474
>UNIPROTKB|Q6K271 [details] [associations]
symbol:P0415D04.46-1 "FCA" species:39947 "Oryza sativa
Japonica Group" [GO:0003723 "RNA binding" evidence=ISS] [GO:0009909
"regulation of flower development" evidence=ISS] [GO:0044428
"nuclear part" evidence=ISS] InterPro:IPR000504 InterPro:IPR001202
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397
PRINTS:PR00961 PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360
SMART:SM00456 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0009790 GO:GO:0031048 GO:GO:0009909 GO:GO:0009553
Gene3D:2.20.70.10 SUPFAM:SSF51045 GO:GO:0044428 EMBL:AY654584
EMBL:AY730687 EMBL:AP006062 EnsemblPlants:LOC_Os09g03610.1
EnsemblPlants:LOC_Os09g03610.2 OMA:WTEHTSP Uniprot:Q6K271
Length = 738
Score = 409 (149.0 bits), Expect = 1.5e-41, Sum P(2) = 1.5e-41
Identities = 75/174 (43%), Positives = 118/174 (67%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
VKLF+G VP+ TE + +F+E V EV +IKD+ T +GCCFV + +EA++A+
Sbjct: 122 VKLFIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVKYATSEEAERAIR 181
Query: 75 ACHNKKTLPGASSPLQVKYADGELER---LEHKLFIGMLPKNVSEAEVSALFSIYGTIKD 131
A HN+ TLPGA P+QV+YADGE ER +EHKLF+ L K + E+ +F+ YG ++D
Sbjct: 182 ALHNQYTLPGAMGPIQVRYADGERERHGAIEHKLFVASLNKQATAKEIEEIFAPYGHVED 241
Query: 132 LQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEK 185
+ I++ + S+GC F+K+ ++E ALAA+ A++G + M G PL++++AD ++
Sbjct: 242 VYIMKDGMRQSRGCGFVKFSSREPALAAMSALSGNYVMRGCEQPLIIRFADPKR 295
Score = 157 (60.3 bits), Expect = 6.6e-10, Sum P(2) = 6.6e-10
Identities = 35/112 (31%), Positives = 64/112 (57%)
Query: 83 PGASSPLQVKYADGELERLEH-------KLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 135
PG S P +Y G + +H KLFIG +P+ +E +V LF +G + ++ ++
Sbjct: 97 PG-SGPRH-RYGSGRGDHSDHDNRNNYVKLFIGSVPRTATEDDVRPLFEEHGDVVEVALI 154
Query: 136 RGSQQ-TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+ + +GC F+KY T E+A A+ A++ ++ + G+ P+ V++AD E+E
Sbjct: 155 KDRKTGEQQGCCFVKYATSEEAERAIRALHNQYTLPGAMGPIQVRYADGERE 206
Score = 121 (47.7 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 30/85 (35%), Positives = 46/85 (54%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFV + K T ++ +F + V++V I+KD R SRGC FV SR+ A A++A
Sbjct: 214 KLFVASLNKQATAKEIEEIFAPYGHVEDVYIMKDGM-RQSRGCGFVKFSSREPALAAMSA 272
Query: 76 CHNKKTLPGASSPLQVKYADGELER 100
+ G PL +++AD + R
Sbjct: 273 LSGNYVMRGCEQPLIIRFADPKRPR 297
Score = 62 (26.9 bits), Expect = 1.5e-41, Sum P(2) = 1.5e-41
Identities = 39/162 (24%), Positives = 60/162 (37%)
Query: 171 GSSVPLVVKWADTEKEXXXXXXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYGYQ 230
GS P+ K + N ++ + PS + MG PP G+
Sbjct: 357 GSDNPMAPKGSTVTSTTDTATFRPQMFSGNGSLSSQTAVPS---SSHMGMNPPPMAQGHH 413
Query: 231 ASGSYGLMQYRLPPMQNQPGFHGIIPPV---NQ-GNAMRGASPDLSSNMGPRNYAMPPSG 286
G ++PP+Q PG P NQ G ++G + + P++ M P
Sbjct: 414 LGGQ------QIPPLQKLPGLPQNFPVQLQNNQLGQPLQGPAQQIGQLQVPQS--MGPGS 465
Query: 287 FVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANS 328
F G + G Q P+ P L + + S V AV+NS
Sbjct: 466 F---GQNRLSG-QLPVSQP---LMQQNASVSAVQVPSAVSNS 500
Score = 55 (24.4 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
Identities = 19/69 (27%), Positives = 33/69 (47%)
Query: 352 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYES--PA-SAQNAI 408
LF+ + ++ +E+ F +G V + D C GFV + S PA +A +A+
Sbjct: 215 LFVASLNKQATAKEIEEIFAPYGHVEDVYIMKDGMRQSRGC-GFVKFSSREPALAAMSAL 273
Query: 409 A---MMNGC 414
+ +M GC
Sbjct: 274 SGNYVMRGC 282
>UNIPROTKB|Q6WQT6 [details] [associations]
symbol:Q6WQT6 "Flowering time control protein isoform
OsFCA-1" species:39946 "Oryza sativa Indica Group" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0009909 "regulation of flower
development" evidence=ISS] [GO:0044428 "nuclear part" evidence=ISS]
InterPro:IPR000504 InterPro:IPR001202 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397 PRINTS:PR00961
PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360 SMART:SM00456
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009790
GO:GO:0031048 GO:GO:0009909 GO:GO:0009553 Gene3D:2.20.70.10
SUPFAM:SSF51045 GO:GO:0044428 EMBL:AY274928
ProteinModelPortal:Q6WQT6 KEGG:dosa:Os09t0123200-01 Gramene:Q6WQT6
Uniprot:Q6WQT6
Length = 738
Score = 409 (149.0 bits), Expect = 1.5e-41, Sum P(2) = 1.5e-41
Identities = 75/174 (43%), Positives = 118/174 (67%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
VKLF+G VP+ TE + +F+E V EV +IKD+ T +GCCFV + +EA++A+
Sbjct: 122 VKLFIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVKYATSEEAERAIR 181
Query: 75 ACHNKKTLPGASSPLQVKYADGELER---LEHKLFIGMLPKNVSEAEVSALFSIYGTIKD 131
A HN+ TLPGA P+QV+YADGE ER +EHKLF+ L K + E+ +F+ YG ++D
Sbjct: 182 ALHNQYTLPGAMGPIQVRYADGERERHGAIEHKLFVASLNKQATAKEIEEIFAPYGHVED 241
Query: 132 LQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEK 185
+ I++ + S+GC F+K+ ++E ALAA+ A++G + M G PL++++AD ++
Sbjct: 242 VYIMKDGMRQSRGCGFVKFSSREPALAAMSALSGNYVMRGCEQPLIIRFADPKR 295
Score = 157 (60.3 bits), Expect = 6.6e-10, Sum P(2) = 6.6e-10
Identities = 35/112 (31%), Positives = 64/112 (57%)
Query: 83 PGASSPLQVKYADGELERLEH-------KLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 135
PG S P +Y G + +H KLFIG +P+ +E +V LF +G + ++ ++
Sbjct: 97 PG-SGPRH-RYGSGRGDHSDHDNRNNYVKLFIGSVPRTATEDDVRPLFEEHGDVVEVALI 154
Query: 136 RGSQQ-TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+ + +GC F+KY T E+A A+ A++ ++ + G+ P+ V++AD E+E
Sbjct: 155 KDRKTGEQQGCCFVKYATSEEAERAIRALHNQYTLPGAMGPIQVRYADGERE 206
Score = 121 (47.7 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 30/85 (35%), Positives = 46/85 (54%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFV + K T ++ +F + V++V I+KD R SRGC FV SR+ A A++A
Sbjct: 214 KLFVASLNKQATAKEIEEIFAPYGHVEDVYIMKDGM-RQSRGCGFVKFSSREPALAAMSA 272
Query: 76 CHNKKTLPGASSPLQVKYADGELER 100
+ G PL +++AD + R
Sbjct: 273 LSGNYVMRGCEQPLIIRFADPKRPR 297
Score = 62 (26.9 bits), Expect = 1.5e-41, Sum P(2) = 1.5e-41
Identities = 39/162 (24%), Positives = 60/162 (37%)
Query: 171 GSSVPLVVKWADTEKEXXXXXXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYGYQ 230
GS P+ K + N ++ + PS + MG PP G+
Sbjct: 357 GSDNPMAPKGSTVTSTTDTATFRPQMFSGNGSLSSQTAVPS---SSHMGMNPPPMAQGHH 413
Query: 231 ASGSYGLMQYRLPPMQNQPGFHGIIPPV---NQ-GNAMRGASPDLSSNMGPRNYAMPPSG 286
G ++PP+Q PG P NQ G ++G + + P++ M P
Sbjct: 414 LGGQ------QIPPLQKLPGLPQNFPVQLQNNQLGQPLQGPAQQIGQLQVPQS--MGPGS 465
Query: 287 FVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANS 328
F G + G Q P+ P L + + S V AV+NS
Sbjct: 466 F---GQNRLSG-QLPVSQP---LMQQNASVSAVQVPSAVSNS 500
Score = 55 (24.4 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
Identities = 19/69 (27%), Positives = 33/69 (47%)
Query: 352 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYES--PA-SAQNAI 408
LF+ + ++ +E+ F +G V + D C GFV + S PA +A +A+
Sbjct: 215 LFVASLNKQATAKEIEEIFAPYGHVEDVYIMKDGMRQSRGC-GFVKFSSREPALAAMSAL 273
Query: 409 A---MMNGC 414
+ +M GC
Sbjct: 274 SGNYVMRGC 282
>UNIPROTKB|Q9BZC1 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] [GO:0006376 "mRNA splice
site selection" evidence=IEA] [GO:0090394 "negative regulation of
excitatory postsynaptic membrane potential" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0042835 "BRE binding"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IDA] [GO:0007281 "germ cell development"
evidence=NAS] [GO:0009790 "embryo development" evidence=NAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=NAS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=IDA] [GO:0000380 "alternative mRNA
splicing, via spliceosome" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0009790 GO:GO:0007281
GO:GO:0000900 GO:GO:0000380 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 eggNOG:NOG251494 GO:GO:0042835 GO:GO:0006376
GO:GO:0000381 OrthoDB:EOG4RJG30 CTD:56853 EMBL:AF329265
EMBL:AK074596 EMBL:AB209774 EMBL:BC001946 EMBL:BC004167
EMBL:BC045711 EMBL:AF248650 EMBL:AF248651 IPI:IPI00024603
IPI:IPI00384535 IPI:IPI00853216 IPI:IPI00853277 IPI:IPI00853444
RefSeq:NP_001020258.1 RefSeq:NP_001020259.1 RefSeq:NP_001020260.1
RefSeq:NP_064565.1 UniGene:Hs.435976 UniGene:Hs.600908 PDB:2DGP
PDB:2DNK PDBsum:2DGP PDBsum:2DNK ProteinModelPortal:Q9BZC1
SMR:Q9BZC1 STRING:Q9BZC1 PhosphoSite:Q9BZC1 DMDM:74761348
PRIDE:Q9BZC1 Ensembl:ENST00000334919 Ensembl:ENST00000361795
Ensembl:ENST00000412753 Ensembl:ENST00000420428 GeneID:56853
KEGG:hsa:56853 UCSC:uc002lae.2 UCSC:uc002laf.2 UCSC:uc002lag.2
UCSC:uc021uix.1 UCSC:uc021uiy.1 GeneCards:GC18M034823
HGNC:HGNC:14015 HPA:HPA037986 MIM:612679 neXtProt:NX_Q9BZC1
PharmGKB:PA25428 InParanoid:Q9BZC1 OMA:EDSEKNG PhylomeDB:Q9BZC1
ChiTaRS:CELF4 EvolutionaryTrace:Q9BZC1 GenomeRNAi:56853
NextBio:62266 ArrayExpress:Q9BZC1 Bgee:Q9BZC1 CleanEx:HS_BRUNOL4
Genevestigator:Q9BZC1 Uniprot:Q9BZC1
Length = 486
Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
Identities = 139/454 (30%), Positives = 201/454 (44%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
+KLF+GQ+P+++ E L +F+EF + E+ ++KD+ T +GC F+ R+ A KA +
Sbjct: 54 IKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQS 113
Query: 75 ACHNKKTLPGASSPLQVKYADGE-------LER---LEHKLFIGMLPKNVSEAEVSALFS 124
A H +KTLPG + P+QVK AD E L + + KLF+GML K SE +V LF
Sbjct: 114 ALHEQKTLPGMNRPIQVKPADSESRGGSSCLRQPPSQDRKLFVGMLNKQQSEDDVRRLFE 173
Query: 125 IYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 184
+G I++ ILRG SKGCAF+KY + +A AA+ A++G M G+S LVVK+ADT+
Sbjct: 174 AFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTD 233
Query: 185 KEXXXXXXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGY-GYQASGSY--GLMQYR 241
KE N + +GA A G Y + +
Sbjct: 234 KERTMRRMQQMAGQMGMF-NPMAIPFGAYGAYAQALMQQQAALMASVAQGGYLNPMAAFA 292
Query: 242 LPPMQNQPGFH--GI----IPPVNQGNAMRG----ASPDLSSNMGPRNYA-MPPSGFVGS 290
MQ + G+ + P + G+ G A P + S +G + +PP +
Sbjct: 293 AAQMQQMAALNMNGLAAAPMTPTSGGSTPPGITAPAVPSIPSPIGVNGFTGLPPQA---N 349
Query: 291 GYPAVPGL--QYPMPYPG-GMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGP 347
G PA + PYP PL + V + P P
Sbjct: 350 GQPAAEAVFANGIHPYPAQSPTAADPLQQAYAGVQQY---AGPAAYPAAYGQISQAFPQP 406
Query: 348 PGANLFIYHIPQEFGDQELG-NAF-----QAFGRVLSAKVFVDKATGVSKCFGFVSYESP 401
P IPQ+ + G N F Q FG ++F+ FGFVS+++P
Sbjct: 407 PPM------IPQQQREGPEGCNLFIYHLPQEFGDAELMQMFLP--------FGFVSFDNP 452
Query: 402 ASAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 435
ASAQ AI MNG R N+PY
Sbjct: 453 ASAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY 486
>UNIPROTKB|Q5NVC8 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9601
"Pongo abelii" [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026 CTD:56853 EMBL:CR859631
EMBL:CR860590 EMBL:CR926110 RefSeq:NP_001127577.1
RefSeq:NP_001128833.1 UniGene:Pab.18713 ProteinModelPortal:Q5NVC8
SMR:Q5NVC8 PRIDE:Q5NVC8 GeneID:100174655 KEGG:pon:100174655
InParanoid:Q5NVC8 Uniprot:Q5NVC8
Length = 486
Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
Identities = 139/454 (30%), Positives = 201/454 (44%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
+KLF+GQ+P+++ E L +F+EF + E+ ++KD+ T +GC F+ R+ A KA +
Sbjct: 54 IKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQS 113
Query: 75 ACHNKKTLPGASSPLQVKYADGE-------LER---LEHKLFIGMLPKNVSEAEVSALFS 124
A H +KTLPG + P+QVK AD E L + + KLF+GML K SE +V LF
Sbjct: 114 ALHEQKTLPGMNRPIQVKPADSESRGGSSCLRQPPSQDRKLFVGMLNKQQSEDDVRRLFE 173
Query: 125 IYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 184
+G I++ ILRG SKGCAF+KY + +A AA+ A++G M G+S LVVK+ADT+
Sbjct: 174 AFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTD 233
Query: 185 KEXXXXXXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGY-GYQASGSY--GLMQYR 241
KE N + +GA A G Y + +
Sbjct: 234 KERTMRRMQQMAGQMGMF-NPMAIPFGAYGAYAQALMQQQAALMASVAQGGYLNPMAAFA 292
Query: 242 LPPMQNQPGFH--GI----IPPVNQGNAMRG----ASPDLSSNMGPRNYA-MPPSGFVGS 290
MQ + G+ + P + G+ G A P + S +G + +PP +
Sbjct: 293 AAQMQQMAALNMNGLAAAPMTPTSGGSTPPGITAPAVPSIPSPIGVNGFTGLPPQA---N 349
Query: 291 GYPAVPGL--QYPMPYPG-GMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGP 347
G PA + PYP PL + V + P P
Sbjct: 350 GQPAAEAVFANGIHPYPAQSPTAADPLQQAYAGVQQY---AGPAAYPAAYGQISQAFPQP 406
Query: 348 PGANLFIYHIPQEFGDQELG-NAF-----QAFGRVLSAKVFVDKATGVSKCFGFVSYESP 401
P IPQ+ + G N F Q FG ++F+ FGFVS+++P
Sbjct: 407 PPM------IPQQQREGPEGCNLFIYHLPQEFGDAELMQMFLP--------FGFVSFDNP 452
Query: 402 ASAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 435
ASAQ AI MNG R N+PY
Sbjct: 453 ASAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY 486
>UNIPROTKB|F1SAI1 [details] [associations]
symbol:CELF4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0090394 "negative regulation of excitatory postsynaptic
membrane potential" evidence=IEA] [GO:0048026 "positive regulation
of mRNA splicing, via spliceosome" evidence=IEA] [GO:0006376 "mRNA
splice site selection" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000380 GO:GO:0048026
GO:GO:0006376 GeneTree:ENSGT00560000076837 GO:GO:0000381
OMA:SAMESIN EMBL:CU442705 EMBL:FP102263 Ensembl:ENSSSCT00000004150
Uniprot:F1SAI1
Length = 371
Score = 232 (86.7 bits), Expect = 2.3e-36, Sum P(2) = 2.3e-36
Identities = 65/180 (36%), Positives = 81/180 (45%)
Query: 267 ASPDLSSNMGPRNYA-MPPSGFVGSGYPAVPGL--QYPMPYPG-GMLGHRPLNNSPGSVS 322
A P + S +G + +PP +G PA + PYP PL + V
Sbjct: 195 AVPSIPSPIGVNGFTGLPPQA---NGQPAAEAVFANGIHPYPAQSPTAADPLQQAYAGVQ 251
Query: 323 PAVANSNPXXXXXXXXXX--------XXQIEGPPGANLFIYHIPQEFGDQELGNAFQAFG 374
A + P Q EGP G NLFI H+PQEFGD EL F FG
Sbjct: 252 QYAAAAYPAAYGQISQAFPQPPPMIPQQQREGPEGCNLFICHLPQEFGDAELMQMFLPFG 311
Query: 375 RVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKP 434
+S+K FVD+ T SKCFGFVS+++PASAQ AI MNG R N+P
Sbjct: 312 NGISSKAFVDR-TNQSKCFGFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDANRP 370
Score = 215 (80.7 bits), Expect = 2.3e-36, Sum P(2) = 2.3e-36
Identities = 43/85 (50%), Positives = 58/85 (68%)
Query: 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALE 161
+ KLF+GML K SE +V LF +G I++ ILRG SKGCAF+KY + +A AA+
Sbjct: 18 DRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAIN 77
Query: 162 AINGKHKMEGSSVPLVVKWADTEKE 186
A++G M G+S LVVK+ADT+KE
Sbjct: 78 ALHGSQTMPGASSSLVVKFADTDKE 102
Score = 170 (64.9 bits), Expect = 1.2e-31, Sum P(2) = 1.2e-31
Identities = 36/90 (40%), Positives = 53/90 (58%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFVG + K +E + +F+ F ++E I++ S+GC FV S EA A+NA
Sbjct: 20 KLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGN-SKGCAFVKYSSHAEAQAAINA 78
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKL 105
H +T+PGASS L VK+AD + ER ++
Sbjct: 79 LHGSQTMPGASSSLVVKFADTDKERTMRRM 108
Score = 69 (29.3 bits), Expect = 3.4e-13, Sum P(2) = 3.4e-13
Identities = 19/62 (30%), Positives = 32/62 (51%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGT-IKDLQILRGSQQTSKGCAFLKYETKEQALAALEAI 163
LFI LP+ +AE+ +F +G I + + Q SK F+ ++ A A++A+
Sbjct: 289 LFICHLPQEFGDAELMQMFLPFGNGISSKAFVDRTNQ-SKCFGFVSFDNPASAQTAIQAM 347
Query: 164 NG 165
NG
Sbjct: 348 NG 349
>UNIPROTKB|B3KWE6 [details] [associations]
symbol:BRUNOL6 "cDNA FLJ42868 fis, clone BRHIP2021615,
highly similar to Homo sapiens bruno-like 6, RNA binding protein,
mRNA" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471082 HOVERGEN:HBG107646 HOGENOM:HOG000004754 EMBL:AC009690
UniGene:Hs.348342 HGNC:HGNC:14059 EMBL:AK124858 IPI:IPI01012509
SMR:B3KWE6 STRING:B3KWE6 Ensembl:ENST00000539635 Uniprot:B3KWE6
Length = 342
Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
Identities = 122/350 (34%), Positives = 162/350 (46%)
Query: 109 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 168
ML K E +V LF +G I++ +LR TSKGCAF+K+ ++ +A AA+ ++G
Sbjct: 1 MLGKQQGEEDVRRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIRGLHGSRT 60
Query: 169 MEGSSVPLVVKWADTEKEXXXXXXXXXXXXXNN-----LP--------NADSQHPSLFGA 215
M G+S LVVK ADT++E LP A QH + A
Sbjct: 61 MAGASSSLVVKLADTDRERALRRMQQMAGHLGAFHPAPLPLGACGAYTTAILQHQAALLA 120
Query: 216 LPMGYA-PPYNGYGYQAS--GSYGLMQYRLPPM---QNQPGFH-GIIPPVNQGNAMRGAS 268
G P Q ++ L+ L P + PG G +P + + G
Sbjct: 121 AAQGPGLGPVAAVAAQMQHVAAFSLVAAPLLPAAAANSPPGSGPGTLPGLPAPIGVNGFG 180
Query: 269 PDLSSNMG-PRNYAMPPSGFVGSGYPAV-PGLQYPMPYP-GGMLGHRPLNNSPGSVSPAV 325
P G P + + +G S YPA PG+ P+ GM H P + +P V
Sbjct: 181 PLTPQTNGQPGSDTLYNNGL--SPYPAQSPGVADPLQQAYAGM--HHYAAAYPSAYAP-V 235
Query: 326 ANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDK 385
+ + P Q EGP G NLFIYH+PQEFGD EL F FG V+SAKVFVD+
Sbjct: 236 STAFPQQPSALPQQ---QREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDR 292
Query: 386 ATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 435
AT SKCFGFVS+++P SAQ AI MNG R N+PY
Sbjct: 293 ATNQSKCFGFVSFDNPTSAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY 342
Score = 121 (47.7 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 27/77 (35%), Positives = 41/77 (53%)
Query: 24 KHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLP 83
K E + +F+ F ++E +++ S+GC FV S+ EA A+ H +T+
Sbjct: 4 KQQGEEDVRRLFQPFGHIEECTVLRSPDG-TSKGCAFVKFGSQGEAQAAIRGLHGSRTMA 62
Query: 84 GASSPLQVKYADGELER 100
GASS L VK AD + ER
Sbjct: 63 GASSSLVVKLADTDRER 79
Score = 74 (31.1 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 19/63 (30%), Positives = 33/63 (52%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQIL--RGSQQTSKGCAFLKYETKEQALAALEA 162
LFI LP+ +AE+ F +G + ++ R + Q SK F+ ++ A A++A
Sbjct: 259 LFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQ-SKCFGFVSFDNPTSAQTAIQA 317
Query: 163 ING 165
+NG
Sbjct: 318 MNG 320
>RGD|1565016 [details] [associations]
symbol:Celf5 "CUGBP, Elav-like family member 5" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1565016 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K13207 GeneTree:ENSGT00560000076837 OrthoDB:EOG4RJG30 CTD:60680
IPI:IPI00914219 RefSeq:NP_001129075.1 UniGene:Rn.12319
ProteinModelPortal:D4A8V0 Ensembl:ENSRNOT00000061219 GeneID:314647
KEGG:rno:314647 UCSC:RGD:1565016 NextBio:668034 Uniprot:D4A8V0
Length = 395
Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
Identities = 111/314 (35%), Positives = 156/314 (49%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
+KLFVGQ+P+H+ E L +F++F + E+ ++KD T +GC F+ +R A KA
Sbjct: 7 IKLFVGQIPRHLHEQDLKPLFEQFGRIYELTVLKDPHTGVHKGCAFLTYCARDSAIKAQT 66
Query: 75 ACHNKKTLPGASSPLQVKYADGELER-LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
A H +KTLPG + P+QVK AD E + KLF+GML K SE +V LF +G I +
Sbjct: 67 ALHEQKTLPGMARPIQVKPADSENRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECT 126
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKEXXXXXXX 193
+LRG +SKGCAF+K+ + +A AA+ A++G M G+S LVVK+ADT+KE
Sbjct: 127 VLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQ 186
Query: 194 XXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYGY----------QASGSYGLMQYRLP 243
L PSL LP PY+ Y SGSY P
Sbjct: 187 QMVGQLGILT------PSL--TLPFS---PYSAYAQALMQQQTTVLSTSGSYLSPGVAFP 235
Query: 244 PMQNQP----GFHGI-IPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGS-GYPAV-P 296
P Q +G+ P+ + + + P L + P PSGF G +P P
Sbjct: 236 PCHIQQIGTVSLNGLPATPIAPASGLH-SPPLLGTAAVPGLMTSIPSGFPGVLPFPGSHP 294
Query: 297 GLQ--YP---MPYP 305
L+ Y +PYP
Sbjct: 295 ALETVYANGLVPYP 308
>UNIPROTKB|F1SID9 [details] [associations]
symbol:CELF1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043484 "regulation of RNA splicing" evidence=IEA]
[GO:0042835 "BRE binding" evidence=IEA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IEA]
[GO:0031369 "translation initiation factor binding" evidence=IEA]
[GO:0007286 "spermatid development" evidence=IEA] [GO:0006376 "mRNA
splice site selection" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0043484 GO:GO:0042835 GeneTree:ENSGT00560000076837
EMBL:CU856103 Ensembl:ENSSSCT00000014453 OMA:INQPITQ Uniprot:F1SID9
Length = 344
Score = 266 (98.7 bits), Expect = 9.0e-34, Sum P(2) = 9.0e-34
Identities = 57/116 (49%), Positives = 66/116 (56%)
Query: 323 PAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVF 382
P + N N Q EGP GANLFIYH+PQEFGDQ+L F FG V+SAKVF
Sbjct: 230 PTLYNQN-LLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVF 288
Query: 383 VDKATGVSKCFG---FVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 435
+DK T +SKCFG FVSY++P SAQ AI MNG R +KPY
Sbjct: 289 IDKQTNLSKCFGHTGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSKPY 344
Score = 117 (46.2 bits), Expect = 9.0e-34, Sum P(2) = 9.0e-34
Identities = 34/115 (29%), Positives = 57/115 (49%)
Query: 57 GCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSE 116
GC FV +R A A+ A H +T+ G SSP+ VK+AD + ++ E K L + + +
Sbjct: 1 GCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDK-EQKRMAQQLQQQMQQ 59
Query: 117 AEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEG 171
+SA S++G + L L G Q + +L+ + + L ++ H M G
Sbjct: 60 --ISAA-SVWGNLAGLNTL-GPQYLA---LYLQLLQQTASSGNLNTLSSLHPMGG 107
Score = 108 (43.1 bits), Expect = 7.9e-33, Sum P(2) = 7.9e-33
Identities = 20/43 (46%), Positives = 31/43 (72%)
Query: 144 GCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
GCAF+ + T+ A A++A++ MEG S P+VVK+ADT+K+
Sbjct: 1 GCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKD 43
>UNIPROTKB|H9L0T2 [details] [associations]
symbol:H9L0T2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 EMBL:AADN02043362 EMBL:AADN02043363
Ensembl:ENSGALT00000028399 Uniprot:H9L0T2
Length = 225
Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
Identities = 73/169 (43%), Positives = 104/169 (61%)
Query: 20 GQVPKHMTEAQLLAMFKEF-ALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHN 78
GQ+P+++ E A K A +E+ ++KD+ T +GC F+ +R A KA A H
Sbjct: 22 GQIPRNLEEKGPQAANKNSSARSNELTVLKDRYTGMHKGCAFLTYCARDSAIKAQTALHE 81
Query: 79 KKTLPGASSPLQVKYADGELER-LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG 137
+KTLPG + P+QVK AD E + KLF+GML K SE +V LF +G I + +LRG
Sbjct: 82 QKTLPGMARPIQVKPADSESRGGRDRKLFVGMLNKQQSEDDVLRLFEPFGVIDECTVLRG 141
Query: 138 SQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
SKGCAF+K+ + +A AA+ A++G M G+S LVVK+ADT+KE
Sbjct: 142 PDGNSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKE 190
Score = 177 (67.4 bits), Expect = 5.7e-13, P = 5.7e-13
Identities = 36/85 (42%), Positives = 53/85 (62%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFVG + K +E +L +F+ F ++DE +++ S+GC FV S EA A++A
Sbjct: 108 KLFVGMLNKQQSEDDVLRLFEPFGVIDECTVLRGPDGN-SKGCAFVKFSSHTEAQAAIHA 166
Query: 76 CHNKKTLPGASSPLQVKYADGELER 100
H +T+PGASS L VK+AD + ER
Sbjct: 167 LHGSQTMPGASSSLVVKFADTDKER 191
>UNIPROTKB|A1L544 [details] [associations]
symbol:TNRC4 "Trinucleotide repeat containing 4"
species:9913 "Bos taurus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 UniGene:Bt.18201 HOVERGEN:HBG002295
EMBL:DAAA02007247 EMBL:BT029831 IPI:IPI00906974 SMR:A1L544
Ensembl:ENSBTAT00000056432 HOGENOM:HOG000220928 Uniprot:A1L544
Length = 139
Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
Identities = 59/131 (45%), Positives = 85/131 (64%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
+KLFVGQ+P+H+ E L +F++F + E+ +IKDK T +GC F+ +R A KA +
Sbjct: 7 IKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQS 66
Query: 75 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 134
A H +KTLPG + P+QVK AD E + KLF+GML K ++ +V +F +GTI + +
Sbjct: 67 ALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTV 126
Query: 135 LRGSQQTSKGC 145
LRG TSKGC
Sbjct: 127 LRGPDGTSKGC 137
Score = 140 (54.3 bits), Expect = 6.4e-09, P = 6.4e-09
Identities = 28/82 (34%), Positives = 50/82 (60%)
Query: 104 KLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQ-TSKGCAFLKYETKEQALAALEA 162
KLF+G +P+++ E ++ +F +G I +L +++ KGCAFL Y ++ AL A A
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSA 67
Query: 163 INGKHKMEGSSVPLVVKWADTE 184
++ + + G + P+ VK AD+E
Sbjct: 68 LHEQKTLPGMNRPIQVKPADSE 89
>UNIPROTKB|Q0V9L3 [details] [associations]
symbol:celf4 "CUGBP Elav-like family member 4" species:8364
"Xenopus (Silurana) tropicalis" [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 CTD:56853 EMBL:BC121490 RefSeq:NP_001072378.1
UniGene:Str.35078 ProteinModelPortal:Q0V9L3 SMR:Q0V9L3
GeneID:779831 KEGG:xtr:779831 Xenbase:XB-GENE-5873699
Uniprot:Q0V9L3
Length = 424
Score = 198 (74.8 bits), Expect = 1.1e-26, Sum P(3) = 1.1e-26
Identities = 36/83 (43%), Positives = 56/83 (67%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
+KLF+GQ+P+++ E L +F+EF + E+ ++KD+ T +GC F+ R+ A KA +
Sbjct: 47 IKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQS 106
Query: 75 ACHNKKTLPGASSPLQVKYADGE 97
A H +KTLPG + P+QVK AD E
Sbjct: 107 ALHEQKTLPGMNRPIQVKPADSE 129
Score = 151 (58.2 bits), Expect = 7.6e-21, Sum P(3) = 7.6e-21
Identities = 33/82 (40%), Positives = 50/82 (60%)
Query: 104 KLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEA 162
KLFIG +P+N+ E ++ LF +G I +L +L+ KGCAFL Y +E AL A A
Sbjct: 48 KLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSA 107
Query: 163 INGKHKMEGSSVPLVVKWADTE 184
++ + + G + P+ VK AD+E
Sbjct: 108 LHEQKTLPGMNRPIQVKPADSE 129
Score = 129 (50.5 bits), Expect = 3.1e-18, Sum P(3) = 3.1e-18
Identities = 25/60 (41%), Positives = 39/60 (65%)
Query: 127 GTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
G + +Q+ ++ GCAF+KY + +A AA+ A++G M G+S LVVK+ADT+KE
Sbjct: 116 GMNRPIQVKPADSESRGGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKE 175
Score = 123 (48.4 bits), Expect = 1.6e-17, Sum P(3) = 1.6e-17
Identities = 25/59 (42%), Positives = 35/59 (59%)
Query: 47 IKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKL 105
+K + + GC FV S EA A+NA H +T+PGASS L VK+AD + ER ++
Sbjct: 123 VKPADSESRGGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTMRRM 181
Score = 117 (46.2 bits), Expect = 1.1e-26, Sum P(3) = 1.1e-26
Identities = 23/34 (67%), Positives = 24/34 (70%)
Query: 343 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRV 376
Q EGP G NLFIYH+PQEFGD EL F FG V
Sbjct: 352 QREGPEGCNLFIYHLPQEFGDAELMQMFLPFGFV 385
Score = 87 (35.7 bits), Expect = 1.1e-26, Sum P(3) = 1.1e-26
Identities = 19/43 (44%), Positives = 23/43 (53%)
Query: 393 FGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 435
FGFVS+++PASAQ AI MNG R N+PY
Sbjct: 382 FGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY 424
Score = 44 (20.5 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 395 FVSYESPASAQNAIAMMNG 413
FV Y S A AQ AI ++G
Sbjct: 136 FVKYSSHAEAQAAINALHG 154
Score = 43 (20.2 bits), Expect = 4.7e-19, Sum P(3) = 4.7e-19
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTI 129
LFI LP+ +AE+ +F +G +
Sbjct: 361 LFIYHLPQEFGDAELMQMFLPFGFV 385
Score = 41 (19.5 bits), Expect = 2.4e-14, Sum P(3) = 2.4e-14
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 147 FLKYETKEQALAALEAING 165
F+ ++ A AA++A+NG
Sbjct: 384 FVSFDNPASAQAAIQAMNG 402
>UNIPROTKB|F1RUN0 [details] [associations]
symbol:CELF2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006376 "mRNA splice site selection" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0006376
GeneTree:ENSGT00560000076837 EMBL:CU896684
Ensembl:ENSSSCT00000012171 OMA:PANNENR Uniprot:F1RUN0
Length = 236
Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
Identities = 53/93 (56%), Positives = 62/93 (66%)
Query: 343 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 402
Q EGP GANLFIYH+PQEFGDQ++ F FG V+SAKVF+DK T +SKCFGFVSY++P
Sbjct: 144 QKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPV 203
Query: 403 SAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 435
SAQ AI MNG R +KPY
Sbjct: 204 SAQAAIQAMNGFQIGMKRLKVQLKRSKNDSKPY 236
>UNIPROTKB|Q3ZCE2 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:9913 "Bos taurus"
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0045727 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064
OMA:RFGGPLH EMBL:DAAA02019508 EMBL:DAAA02019509 EMBL:BC102495
IPI:IPI00703347 RefSeq:NP_001069922.1 UniGene:Bt.49576 SMR:Q3ZCE2
STRING:Q3ZCE2 Ensembl:ENSBTAT00000000805 GeneID:617316
KEGG:bta:617316 InParanoid:Q3ZCE2 NextBio:20900599 Uniprot:Q3ZCE2
Length = 326
Score = 220 (82.5 bits), Expect = 5.4e-23, Sum P(2) = 5.4e-23
Identities = 54/171 (31%), Positives = 98/171 (57%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
R L V +P++MT+ +L ++F V+ +I+DK S G FV + ++A++A+
Sbjct: 19 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI 78
Query: 74 NACHNKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + + S ++V YA E ++ L+I LP+N+++ +V +FS +G I +
Sbjct: 79 NTLNGLRL---QSKTIKVSYARPSSEVIKDANLYISGLPRNMTQKDVEDMFSRFGRIINS 135
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181
++L Q T S+G AF++++ + +A A+ + NG HK GSS P+ VK+A
Sbjct: 136 RVLV-DQTTGLSRGVAFIRFDKRSEAEEAITSFNG-HKPPGSSEPITVKFA 184
Score = 124 (48.7 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 21/64 (32%), Positives = 41/64 (64%)
Query: 350 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 409
ANL+I +P+ +++ + F FGR+++++V VD+ TG+S+ F+ ++ + A+ AI
Sbjct: 106 ANLYISGLPRNMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAIT 165
Query: 410 MMNG 413
NG
Sbjct: 166 SFNG 169
Score = 119 (46.9 bits), Expect = 0.00020, P = 0.00020
Identities = 25/63 (39%), Positives = 36/63 (57%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
NL + ++PQ EL + F + G V SAK+ DK G S +GFV+Y + A+ AI
Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 80
Query: 411 MNG 413
+NG
Sbjct: 81 LNG 83
Score = 95 (38.5 bits), Expect = 5.4e-23, Sum P(2) = 5.4e-23
Identities = 24/62 (38%), Positives = 33/62 (53%)
Query: 352 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 411
+FIY++ Q+ + L F FG V + KV D T K FGFV+ + A AIA +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 412 NG 413
NG
Sbjct: 306 NG 307
>UNIPROTKB|D3K5N7 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1" species:9823 "Sus scrofa" [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727
GO:GO:0070935 CTD:1994 KO:K13088 OrthoDB:EOG4Z8XWZ
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:CU929699 EMBL:GU373715 RefSeq:NP_001182263.1 UniGene:Ssc.4516
ProteinModelPortal:D3K5N7 Ensembl:ENSSSCT00000014844
GeneID:100337681 KEGG:ssc:100337681 Uniprot:D3K5N7
Length = 326
Score = 214 (80.4 bits), Expect = 3.6e-22, Sum P(2) = 3.6e-22
Identities = 52/171 (30%), Positives = 97/171 (56%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
R L V +P++MT+ +L ++F ++ +I+DK S G FV + ++A++A+
Sbjct: 19 RTNLIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI 78
Query: 74 NACHNKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + + S ++V YA E ++ L+I LP+ +++ +V +FS +G I +
Sbjct: 79 NTLNGLRL---QSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSPFGRIINS 135
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181
++L Q T S+G AF++++ + +A A+ + NG HK GSS P+ VK+A
Sbjct: 136 RVLV-DQTTGLSRGVAFIRFDKRSEAEEAITSFNG-HKPPGSSEPITVKFA 184
Score = 123 (48.4 bits), Expect = 7.2e-05, P = 7.2e-05
Identities = 21/64 (32%), Positives = 41/64 (64%)
Query: 350 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 409
ANL+I +P+ +++ + F FGR+++++V VD+ TG+S+ F+ ++ + A+ AI
Sbjct: 106 ANLYISGLPRTMTQKDVEDMFSPFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAIT 165
Query: 410 MMNG 413
NG
Sbjct: 166 SFNG 169
Score = 120 (47.3 bits), Expect = 0.00016, P = 0.00016
Identities = 24/63 (38%), Positives = 37/63 (58%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
NL + ++PQ +EL + F + G + SAK+ DK G S +GFV+Y + A+ AI
Sbjct: 21 NLIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 80
Query: 411 MNG 413
+NG
Sbjct: 81 LNG 83
Score = 96 (38.9 bits), Expect = 3.6e-22, Sum P(2) = 3.6e-22
Identities = 24/62 (38%), Positives = 33/62 (53%)
Query: 352 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 411
+FIY++ Q+ + L F FG V + KV D T K FGFV+ + A AIA +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEASMAIASL 305
Query: 412 NG 413
NG
Sbjct: 306 NG 307
>UNIPROTKB|B4DQL3 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107646
HOGENOM:HOG000004754 EMBL:AL589765 UniGene:Hs.26047 HGNC:HGNC:11967
EMBL:AK298852 IPI:IPI00909704 SMR:B4DQL3 STRING:B4DQL3
Ensembl:ENST00000392706 UCSC:uc010pdh.2 Uniprot:B4DQL3
Length = 260
Score = 258 (95.9 bits), Expect = 3.7e-22, P = 3.7e-22
Identities = 67/170 (39%), Positives = 81/170 (47%)
Query: 275 MGPRNYAMPPSGFVGSGYPAVPGLQYPM---PYPGGMLGHRPLNNSPGSVSPAVANSNP- 330
+G Y+ P+ +G PA P YP PYP L PA+ P
Sbjct: 94 LGVNGYSPVPTQ--PTGQPA-PDALYPNGVHPYPAAYPAAYSLVAPAFPQPPALVAQQPP 150
Query: 331 -----XXXXXXXXXXXXQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDK 385
Q EGP G N+FIYH+PQEF D E+ F FG V+SAKVFVD+
Sbjct: 151 PPPQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDR 210
Query: 386 ATGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 435
AT SKCFGFVS+++PASAQ AI MNG R N+PY
Sbjct: 211 ATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY 260
>UNIPROTKB|K7EJD7 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:14015 EMBL:AC015961 EMBL:AC090386
EMBL:AC093332 EMBL:AC129908 Ensembl:ENST00000589386 Uniprot:K7EJD7
Length = 185
Score = 258 (95.9 bits), Expect = 3.7e-22, P = 3.7e-22
Identities = 49/71 (69%), Positives = 56/71 (78%)
Query: 343 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 402
Q EGP G NLFIYH+PQEFGD EL F FG V+S+KVFVD+AT SKCFGFVS+++PA
Sbjct: 107 QREGPEGCNLFIYHLPQEFGDAELMQMFLPFGNVISSKVFVDRATNQSKCFGFVSFDNPA 166
Query: 403 SAQNAIAMMNG 413
SAQ AI MNG
Sbjct: 167 SAQTAIQAMNG 177
>UNIPROTKB|Q15717 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IDA;IMP] [GO:0048255
"mRNA stabilization" evidence=IDA;IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0035925
"mRNA 3'-UTR AU-rich region binding" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0007275 "multicellular organismal
development" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0007275 GO:GO:0005829 GO:GO:0010467 GO:GO:0016071
GO:GO:0005654 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0017091 EMBL:CH471139 GO:GO:0045727 eggNOG:COG0724
GO:GO:0070935 HOVERGEN:HBG002295 EMBL:U38175 EMBL:BT009793
EMBL:BC003376 IPI:IPI00940851 RefSeq:NP_001410.2 UniGene:Hs.184492
UniGene:Hs.713744 PDB:3HI9 PDB:4ED5 PDB:4EGL PDB:4FXV PDBsum:3HI9
PDBsum:4ED5 PDBsum:4EGL PDBsum:4FXV ProteinModelPortal:Q15717
SMR:Q15717 IntAct:Q15717 MINT:MINT-5001300 STRING:Q15717
PhosphoSite:Q15717 DMDM:20981691 PaxDb:Q15717 PeptideAtlas:Q15717
PRIDE:Q15717 DNASU:1994 Ensembl:ENST00000407627 GeneID:1994
KEGG:hsa:1994 UCSC:uc002mjb.3 CTD:1994 GeneCards:GC19M008023
HGNC:HGNC:3312 HPA:CAB005256 MIM:603466 neXtProt:NX_Q15717
PharmGKB:PA27740 HOGENOM:HOG000231162 InParanoid:Q15717 KO:K13088
OrthoDB:EOG4Z8XWZ PhylomeDB:Q15717 BindingDB:Q15717
ChEMBL:CHEMBL1250379 EvolutionaryTrace:Q15717 GenomeRNAi:1994
NextBio:8063 ArrayExpress:Q15717 Bgee:Q15717 CleanEx:HS_ELAVL1
Genevestigator:Q15717 GermOnline:ENSG00000066044 TIGRFAMs:TIGR01661
Uniprot:Q15717
Length = 326
Score = 214 (80.4 bits), Expect = 4.5e-22, Sum P(2) = 4.5e-22
Identities = 53/171 (30%), Positives = 97/171 (56%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
R L V +P++MT+ +L ++F V+ +I+DK S G FV + ++A++A+
Sbjct: 19 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI 78
Query: 74 NACHNKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + + S ++V YA E ++ L+I LP+ +++ +V +FS +G I +
Sbjct: 79 NTLNGLRL---QSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINS 135
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181
++L Q T S+G AF++++ + +A A+ + NG HK GSS P+ VK+A
Sbjct: 136 RVLV-DQTTGLSRGVAFIRFDKRSEAEEAITSFNG-HKPPGSSEPITVKFA 184
Score = 123 (48.4 bits), Expect = 7.2e-05, P = 7.2e-05
Identities = 21/64 (32%), Positives = 41/64 (64%)
Query: 350 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 409
ANL+I +P+ +++ + F FGR+++++V VD+ TG+S+ F+ ++ + A+ AI
Sbjct: 106 ANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAIT 165
Query: 410 MMNG 413
NG
Sbjct: 166 SFNG 169
Score = 119 (46.9 bits), Expect = 0.00020, P = 0.00020
Identities = 25/63 (39%), Positives = 36/63 (57%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
NL + ++PQ EL + F + G V SAK+ DK G S +GFV+Y + A+ AI
Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 80
Query: 411 MNG 413
+NG
Sbjct: 81 LNG 83
Score = 95 (38.5 bits), Expect = 4.5e-22, Sum P(2) = 4.5e-22
Identities = 24/62 (38%), Positives = 33/62 (53%)
Query: 352 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 411
+FIY++ Q+ + L F FG V + KV D T K FGFV+ + A AIA +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 412 NG 413
NG
Sbjct: 306 NG 307
>UNIPROTKB|F1M3I9 [details] [associations]
symbol:Brunol4 "Protein Brunol4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00358672
Ensembl:ENSRNOT00000019548 ArrayExpress:F1M3I9 Uniprot:F1M3I9
Length = 306
Score = 213 (80.0 bits), Expect = 6.1e-22, Sum P(2) = 6.1e-22
Identities = 43/83 (51%), Positives = 57/83 (68%)
Query: 104 KLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAI 163
KLF+GML K SE +V LF +G I++ ILRG SKGCAF+KY + +A AA+ A+
Sbjct: 2 KLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINAL 61
Query: 164 NGKHKMEGSSVPLVVKWADTEKE 186
+G M G+S LVVK+ADT+KE
Sbjct: 62 HGSQTMPGASSSLVVKFADTDKE 84
Score = 170 (64.9 bits), Expect = 8.5e-16, Sum P(2) = 8.5e-16
Identities = 36/90 (40%), Positives = 53/90 (58%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFVG + K +E + +F+ F ++E I++ S+GC FV S EA A+NA
Sbjct: 2 KLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGN-SKGCAFVKYSSHAEAQAAINA 60
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKL 105
H +T+PGASS L VK+AD + ER ++
Sbjct: 61 LHGSQTMPGASSSLVVKFADTDKERTMRRM 90
Score = 89 (36.4 bits), Expect = 6.1e-22, Sum P(2) = 6.1e-22
Identities = 58/229 (25%), Positives = 85/229 (37%)
Query: 217 PMGYAPPYNGYGYQASGSYGLMQYRLPPMQN--QPGFHGIIPPVNQGNAMRGASPDLS-- 272
PM A P+ YG A LMQ + M + Q G+ + + A+ +++
Sbjct: 102 PM--AIPFGAYGAYAQA---LMQQQAALMASVAQGGYLNPMAAFAAAQMQQMAALNMNGL 156
Query: 273 --SNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNP 330
+ M P + P G PAVP + P P G+ G L P AN P
Sbjct: 157 AAAPMTPTSGGSTPPGITA---PAVPSI----PSPIGVNGFTGL--------PPQANGQP 201
Query: 331 XXXXXXXXXXX-XQIEGPPGANLFIYHIPQEFG--DQELGNAFQA-FGRVLSAKVFVDKA 386
+ P A+ + Q + Q G A+ A +G++ A
Sbjct: 202 AAEAVFANGIHPYPAQSPTAAD----PLQQAYAGVQQYAGPAYPAAYGQISQAFPQPPPM 257
Query: 387 TGVSKCFGFVSYESPASAQNAIAMMNGCXXXXXXXXXXXXRDNKQNKPY 435
+ GFVS+++PASAQ AI MNG R N+PY
Sbjct: 258 IPQQQREGFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDANRPY 306
Score = 41 (19.5 bits), Expect = 8.0e-11, Sum P(2) = 8.0e-11
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 139 QQTSKGCAFLKYETKEQALAALEAING 165
QQ +G F+ ++ A A++A+NG
Sbjct: 260 QQQREG--FVSFDNPASAQTAIQAMNG 284
>UNIPROTKB|F1PSC4 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:AAEX03012469
Ensembl:ENSCAFT00000029161 Uniprot:F1PSC4
Length = 334
Score = 214 (80.4 bits), Expect = 6.8e-22, Sum P(2) = 6.8e-22
Identities = 53/171 (30%), Positives = 97/171 (56%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
R L V +P++MT+ +L ++F V+ +I+DK S G FV + ++A++A+
Sbjct: 27 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI 86
Query: 74 NACHNKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + + S ++V YA E ++ L+I LP+ +++ +V +FS +G I +
Sbjct: 87 NTLNGLRL---QSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINS 143
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181
++L Q T S+G AF++++ + +A A+ + NG HK GSS P+ VK+A
Sbjct: 144 RVLV-DQTTGLSRGVAFIRFDKRSEAEEAITSFNG-HKPPGSSEPITVKFA 192
Score = 123 (48.4 bits), Expect = 7.5e-05, P = 7.5e-05
Identities = 21/64 (32%), Positives = 41/64 (64%)
Query: 350 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 409
ANL+I +P+ +++ + F FGR+++++V VD+ TG+S+ F+ ++ + A+ AI
Sbjct: 114 ANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAIT 173
Query: 410 MMNG 413
NG
Sbjct: 174 SFNG 177
Score = 119 (46.9 bits), Expect = 0.00021, P = 0.00021
Identities = 25/63 (39%), Positives = 36/63 (57%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
NL + ++PQ EL + F + G V SAK+ DK G S +GFV+Y + A+ AI
Sbjct: 29 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 88
Query: 411 MNG 413
+NG
Sbjct: 89 LNG 91
Score = 95 (38.5 bits), Expect = 6.8e-22, Sum P(2) = 6.8e-22
Identities = 24/62 (38%), Positives = 33/62 (53%)
Query: 352 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 411
+FIY++ Q+ + L F FG V + KV D T K FGFV+ + A AIA +
Sbjct: 254 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 313
Query: 412 NG 413
NG
Sbjct: 314 NG 315
>UNIPROTKB|F1N9I5 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727 GO:GO:0070935
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:AADN02063542 IPI:IPI00590347 ProteinModelPortal:F1N9I5
Ensembl:ENSGALT00000001029 Uniprot:F1N9I5
Length = 326
Score = 212 (79.7 bits), Expect = 9.1e-22, Sum P(2) = 9.1e-22
Identities = 53/171 (30%), Positives = 97/171 (56%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
R L V +P++MT+ +L ++F V+ +I+DK S G FV + ++A++A+
Sbjct: 19 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI 78
Query: 74 NACHNKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + + S ++V YA E ++ L+I LP+++++ +V +FS +G I +
Sbjct: 79 NTLNGLRL---QSKTIKVSYARPSSEVIKDANLYISGLPRSMTQKDVEDMFSRFGRIINS 135
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181
++L Q T S+G AF++++ + +A A+ NG HK GSS P+ VK+A
Sbjct: 136 RVLV-DQTTGLSRGVAFIRFDKRSEAEEAITNFNG-HKPPGSSEPITVKFA 184
Score = 123 (48.4 bits), Expect = 7.2e-05, P = 7.2e-05
Identities = 21/64 (32%), Positives = 41/64 (64%)
Query: 350 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 409
ANL+I +P+ +++ + F FGR+++++V VD+ TG+S+ F+ ++ + A+ AI
Sbjct: 106 ANLYISGLPRSMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAIT 165
Query: 410 MMNG 413
NG
Sbjct: 166 NFNG 169
Score = 119 (46.9 bits), Expect = 0.00020, P = 0.00020
Identities = 25/63 (39%), Positives = 36/63 (57%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
NL + ++PQ EL + F + G V SAK+ DK G S +GFV+Y + A+ AI
Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 80
Query: 411 MNG 413
+NG
Sbjct: 81 LNG 83
Score = 95 (38.5 bits), Expect = 9.1e-22, Sum P(2) = 9.1e-22
Identities = 24/62 (38%), Positives = 33/62 (53%)
Query: 352 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 411
+FIY++ Q+ + L F FG V + KV D T K FGFV+ + A AIA +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 412 NG 413
NG
Sbjct: 306 NG 307
>UNIPROTKB|F1P311 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 EMBL:AADN02033464 IPI:IPI01017320
Ensembl:ENSGALT00000038509 ArrayExpress:F1P311 Uniprot:F1P311
Length = 328
Score = 199 (75.1 bits), Expect = 1.1e-21, Sum P(2) = 1.1e-21
Identities = 40/95 (42%), Positives = 62/95 (65%)
Query: 94 ADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYE 151
AD E + KLFIGM+ K +E ++ +FS +G I++ +ILRG S+GCAF+ +
Sbjct: 2 ADSEKNNAVEDRKLFIGMISKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFT 61
Query: 152 TKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
T+ A A++A++ MEG S P+VVK+ADT+K+
Sbjct: 62 TRAMAQTAIKAMHQAQTMEGCSSPIVVKFADTQKD 96
Score = 179 (68.1 bits), Expect = 4.3e-19, Sum P(2) = 4.3e-19
Identities = 48/156 (30%), Positives = 77/156 (49%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLF+G + K E + MF F ++E I++ SRGC FV +R A A+ A
Sbjct: 14 KLFIGMISKKCNENDIRVMFSPFGQIEECRILRGPDG-LSRGCAFVTFTTRAMAQTAIKA 72
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 135
H +T+ G SSP+ VK+AD + ++ E K L + + + +SA S++G + L L
Sbjct: 73 MHQAQTMEGCSSPIVVKFADTQKDK-EQKRIAQQLQQQMQQ--ISAA-SVWGNLAGLNTL 128
Query: 136 RGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEG 171
G Q + L+ +T + L ++ H M G
Sbjct: 129 -GPQYLALYLQLLQ-QTAAASSGNLNTLSSLHPMGG 162
Score = 112 (44.5 bits), Expect = 1.1e-21, Sum P(2) = 1.1e-21
Identities = 20/24 (83%), Positives = 22/24 (91%)
Query: 343 QIEGPPGANLFIYHIPQEFGDQEL 366
Q EGP GANLFIYH+PQEFGDQ+L
Sbjct: 302 QKEGPEGANLFIYHLPQEFGDQDL 325
>UNIPROTKB|B4DVB8 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 UniGene:Hs.184492
UniGene:Hs.713744 HGNC:HGNC:3312 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AC010336 EMBL:AC008975 EMBL:AK301013
IPI:IPI00301936 ProteinModelPortal:B4DVB8 SMR:B4DVB8 IntAct:B4DVB8
STRING:B4DVB8 PRIDE:B4DVB8 Ensembl:ENST00000351593 OMA:RFGGPLH
ArrayExpress:B4DVB8 Bgee:B4DVB8 Uniprot:B4DVB8
Length = 353
Score = 214 (80.4 bits), Expect = 1.4e-21, Sum P(2) = 1.4e-21
Identities = 53/171 (30%), Positives = 97/171 (56%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
R L V +P++MT+ +L ++F V+ +I+DK S G FV + ++A++A+
Sbjct: 46 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI 105
Query: 74 NACHNKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + + S ++V YA E ++ L+I LP+ +++ +V +FS +G I +
Sbjct: 106 NTLNGLRL---QSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINS 162
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181
++L Q T S+G AF++++ + +A A+ + NG HK GSS P+ VK+A
Sbjct: 163 RVLV-DQTTGLSRGVAFIRFDKRSEAEEAITSFNG-HKPPGSSEPITVKFA 211
Score = 123 (48.4 bits), Expect = 8.4e-05, P = 8.4e-05
Identities = 21/64 (32%), Positives = 41/64 (64%)
Query: 350 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 409
ANL+I +P+ +++ + F FGR+++++V VD+ TG+S+ F+ ++ + A+ AI
Sbjct: 133 ANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAIT 192
Query: 410 MMNG 413
NG
Sbjct: 193 SFNG 196
Score = 119 (46.9 bits), Expect = 0.00023, P = 0.00023
Identities = 25/63 (39%), Positives = 36/63 (57%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
NL + ++PQ EL + F + G V SAK+ DK G S +GFV+Y + A+ AI
Sbjct: 48 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 107
Query: 411 MNG 413
+NG
Sbjct: 108 LNG 110
Score = 95 (38.5 bits), Expect = 1.4e-21, Sum P(2) = 1.4e-21
Identities = 24/62 (38%), Positives = 33/62 (53%)
Query: 352 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 411
+FIY++ Q+ + L F FG V + KV D T K FGFV+ + A AIA +
Sbjct: 273 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 332
Query: 412 NG 413
NG
Sbjct: 333 NG 334
>GENEDB_PFALCIPARUM|MAL8P1.40 [details] [associations]
symbol:MAL8P1.40 "RNA-binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0006417 "regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR001202
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397 PROSITE:PS01159
PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360 SMART:SM00456
GO:GO:0006417 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:2.20.70.10 SUPFAM:SSF51045 EMBL:AL844507 HSSP:Q61051
RefSeq:XP_001349292.1 ProteinModelPortal:Q8IB66 IntAct:Q8IB66
MINT:MINT-1560303 EnsemblProtists:MAL8P1.40:mRNA GeneID:2655381
KEGG:pfa:MAL8P1.40 EuPathDB:PlasmoDB:PF3D7_0823200
HOGENOM:HOG000282627 OMA:QHFQHFG ProtClustDB:CLSZ2431748
Uniprot:Q8IB66
Length = 286
Score = 174 (66.3 bits), Expect = 1.7e-21, Sum P(2) = 1.7e-21
Identities = 35/68 (51%), Positives = 48/68 (70%)
Query: 346 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQ 405
GPPGAN+F++H+P + D EL FQ FG V+SA++ D A G +K +GFVS+ +P SA
Sbjct: 146 GPPGANVFVFHLPSHWTDMELYQHFQHFGYVVSARIQRD-ANGRNKGYGFVSFNNPESAL 204
Query: 406 NAIAMMNG 413
NAI M+G
Sbjct: 205 NAIKGMHG 212
Score = 136 (52.9 bits), Expect = 1.7e-21, Sum P(2) = 1.7e-21
Identities = 29/78 (37%), Positives = 48/78 (61%)
Query: 104 KLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAI 163
K+FIG +PK+V+E E+ + YGTI + + + Q+ +G AF+ YE + +A A+EA+
Sbjct: 8 KIFIGSIPKDVTEEELKTEAAKYGTITQVYYVPATAQSPRGWAFITYEQRSEAYKAIEAL 67
Query: 164 NGKHKMEGSSVPLVVKWA 181
+ K S PL V++A
Sbjct: 68 DYKCIFPNSQRPLDVRFA 85
Score = 120 (47.3 bits), Expect = 8.2e-20, Sum P(2) = 8.2e-20
Identities = 25/79 (31%), Positives = 42/79 (53%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
K+F+G +PK +TE +L ++ + +V + T ++ RG F+ R EA KA+ A
Sbjct: 8 KIFIGSIPKDVTEEELKTEAAKYGTITQVYYVP-ATAQSPRGWAFITYEQRSEAYKAIEA 66
Query: 76 CHNKKTLPGASSPLQVKYA 94
K P + PL V++A
Sbjct: 67 LDYKCIFPNSQRPLDVRFA 85
Score = 77 (32.2 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 18/75 (24%), Positives = 40/75 (53%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAIN 164
+F+ LP + ++ E+ F +G + +I R + +KG F+ + E AL A++ ++
Sbjct: 152 VFVFHLPSHWTDMELYQHFQHFGYVVSARIQRDANGRNKGYGFVSFNNPESALNAIKGMH 211
Query: 165 GKHKMEGSSVPLVVK 179
G + + G + + +K
Sbjct: 212 GFY-VSGKHLKVQLK 225
>UNIPROTKB|Q8IB66 [details] [associations]
symbol:MAL8P1.40 "RNA binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0006417 "regulation of translation" evidence=ISS]
InterPro:IPR000504 InterPro:IPR001202 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020
PROSITE:PS50102 SMART:SM00360 SMART:SM00456 GO:GO:0006417
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:2.20.70.10
SUPFAM:SSF51045 EMBL:AL844507 HSSP:Q61051 RefSeq:XP_001349292.1
ProteinModelPortal:Q8IB66 IntAct:Q8IB66 MINT:MINT-1560303
EnsemblProtists:MAL8P1.40:mRNA GeneID:2655381 KEGG:pfa:MAL8P1.40
EuPathDB:PlasmoDB:PF3D7_0823200 HOGENOM:HOG000282627 OMA:QHFQHFG
ProtClustDB:CLSZ2431748 Uniprot:Q8IB66
Length = 286
Score = 174 (66.3 bits), Expect = 1.7e-21, Sum P(2) = 1.7e-21
Identities = 35/68 (51%), Positives = 48/68 (70%)
Query: 346 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQ 405
GPPGAN+F++H+P + D EL FQ FG V+SA++ D A G +K +GFVS+ +P SA
Sbjct: 146 GPPGANVFVFHLPSHWTDMELYQHFQHFGYVVSARIQRD-ANGRNKGYGFVSFNNPESAL 204
Query: 406 NAIAMMNG 413
NAI M+G
Sbjct: 205 NAIKGMHG 212
Score = 136 (52.9 bits), Expect = 1.7e-21, Sum P(2) = 1.7e-21
Identities = 29/78 (37%), Positives = 48/78 (61%)
Query: 104 KLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAI 163
K+FIG +PK+V+E E+ + YGTI + + + Q+ +G AF+ YE + +A A+EA+
Sbjct: 8 KIFIGSIPKDVTEEELKTEAAKYGTITQVYYVPATAQSPRGWAFITYEQRSEAYKAIEAL 67
Query: 164 NGKHKMEGSSVPLVVKWA 181
+ K S PL V++A
Sbjct: 68 DYKCIFPNSQRPLDVRFA 85
Score = 120 (47.3 bits), Expect = 8.2e-20, Sum P(2) = 8.2e-20
Identities = 25/79 (31%), Positives = 42/79 (53%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
K+F+G +PK +TE +L ++ + +V + T ++ RG F+ R EA KA+ A
Sbjct: 8 KIFIGSIPKDVTEEELKTEAAKYGTITQVYYVP-ATAQSPRGWAFITYEQRSEAYKAIEA 66
Query: 76 CHNKKTLPGASSPLQVKYA 94
K P + PL V++A
Sbjct: 67 LDYKCIFPNSQRPLDVRFA 85
Score = 77 (32.2 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 18/75 (24%), Positives = 40/75 (53%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAIN 164
+F+ LP + ++ E+ F +G + +I R + +KG F+ + E AL A++ ++
Sbjct: 152 VFVFHLPSHWTDMELYQHFQHFGYVVSARIQRDANGRNKGYGFVSFNNPESALNAIKGMH 211
Query: 165 GKHKMEGSSVPLVVK 179
G + + G + + +K
Sbjct: 212 GFY-VSGKHLKVQLK 225
>MGI|MGI:1100851 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision)-like
1 (Hu antigen R)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006417 "regulation of translation" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0019901 "protein kinase
binding" evidence=ISO] [GO:0035925 "mRNA 3'-UTR AU-rich region
binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=ISO;IMP;IDA] [GO:0048255 "mRNA stabilization"
evidence=ISO;IMP] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1100851 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0045727 EMBL:CH466566 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:U65735 EMBL:AK080365
EMBL:U17595 IPI:IPI00108271 PIR:I49144 RefSeq:NP_034615.2
UniGene:Mm.119162 HSSP:P26378 ProteinModelPortal:P70372 SMR:P70372
DIP:DIP-46480N MINT:MINT-4094207 STRING:P70372 PhosphoSite:P70372
PaxDb:P70372 PRIDE:P70372 Ensembl:ENSMUST00000098950 GeneID:15568
KEGG:mmu:15568 GeneTree:ENSGT00560000077064 InParanoid:P70372
OMA:YANRACA ChiTaRS:ELAVL1 NextBio:288542 Bgee:P70372
Genevestigator:P70372 GermOnline:ENSMUSG00000040028 Uniprot:P70372
Length = 326
Score = 210 (79.0 bits), Expect = 1.8e-21, Sum P(2) = 1.8e-21
Identities = 52/171 (30%), Positives = 97/171 (56%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
R L V +P++MT+ +L ++F V+ +I+DK S G FV + ++A++A+
Sbjct: 19 RTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI 78
Query: 74 NACHNKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
+ + + S ++V YA E ++ L+I LP+ +++ +V +FS +G I +
Sbjct: 79 STLNGLRL---QSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINS 135
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181
++L Q T S+G AF++++ + +A A+ + NG HK GSS P+ VK+A
Sbjct: 136 RVLV-DQTTGLSRGVAFIRFDKRSEAEEAITSFNG-HKPPGSSEPITVKFA 184
Score = 124 (48.7 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
NL + ++PQ +EL + F + G V SAK+ DK G S +GFV+Y + A+ AI+
Sbjct: 21 NLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIST 80
Query: 411 MNG 413
+NG
Sbjct: 81 LNG 83
Score = 123 (48.4 bits), Expect = 7.2e-05, P = 7.2e-05
Identities = 21/64 (32%), Positives = 41/64 (64%)
Query: 350 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 409
ANL+I +P+ +++ + F FGR+++++V VD+ TG+S+ F+ ++ + A+ AI
Sbjct: 106 ANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAIT 165
Query: 410 MMNG 413
NG
Sbjct: 166 SFNG 169
Score = 95 (38.5 bits), Expect = 1.8e-21, Sum P(2) = 1.8e-21
Identities = 24/62 (38%), Positives = 33/62 (53%)
Query: 352 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 411
+FIY++ Q+ + L F FG V + KV D T K FGFV+ + A AIA +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 412 NG 413
NG
Sbjct: 306 NG 307
>RGD|1308649 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=ISO] [GO:0017091 "AU-rich element binding"
evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
[GO:0035925 "mRNA 3'-UTR AU-rich region binding" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=IEA;ISO]
[GO:0048255 "mRNA stabilization" evidence=ISO] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1308649 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 eggNOG:COG0724 HOVERGEN:HBG002295 CTD:1994
HOGENOM:HOG000231162 KO:K13088 OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:CH474084
EMBL:BC168972 EMBL:AB212679 IPI:IPI00869767 RefSeq:NP_001102318.1
UniGene:Rn.216517 SMR:B5DF91 STRING:B5DF91
Ensembl:ENSRNOT00000001415 GeneID:363854 KEGG:rno:363854
UCSC:RGD:1308649 NextBio:684342 Genevestigator:B5DF91
Uniprot:B5DF91
Length = 326
Score = 210 (79.0 bits), Expect = 1.8e-21, Sum P(2) = 1.8e-21
Identities = 52/171 (30%), Positives = 97/171 (56%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
R L V +P++MT+ +L ++F V+ +I+DK S G FV + ++A++A+
Sbjct: 19 RTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI 78
Query: 74 NACHNKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
+ + + S ++V YA E ++ L+I LP+ +++ +V +FS +G I +
Sbjct: 79 STLNGLRL---QSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINS 135
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181
++L Q T S+G AF++++ + +A A+ + NG HK GSS P+ VK+A
Sbjct: 136 RVLV-DQTTGLSRGVAFIRFDKRSEAEEAITSFNG-HKPPGSSEPITVKFA 184
Score = 124 (48.7 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
NL + ++PQ +EL + F + G V SAK+ DK G S +GFV+Y + A+ AI+
Sbjct: 21 NLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIST 80
Query: 411 MNG 413
+NG
Sbjct: 81 LNG 83
Score = 123 (48.4 bits), Expect = 7.2e-05, P = 7.2e-05
Identities = 21/64 (32%), Positives = 41/64 (64%)
Query: 350 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 409
ANL+I +P+ +++ + F FGR+++++V VD+ TG+S+ F+ ++ + A+ AI
Sbjct: 106 ANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAIT 165
Query: 410 MMNG 413
NG
Sbjct: 166 SFNG 169
Score = 95 (38.5 bits), Expect = 1.8e-21, Sum P(2) = 1.8e-21
Identities = 24/62 (38%), Positives = 33/62 (53%)
Query: 352 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 411
+FIY++ Q+ + L F FG V + KV D T K FGFV+ + A AIA +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 412 NG 413
NG
Sbjct: 306 NG 307
>ZFIN|ZDB-GENE-980526-76 [details] [associations]
symbol:elavl3 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 3 (Hu antigen C)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-980526-76 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP OrthoDB:EOG43R3N0
EMBL:CR385086 EMBL:BC065343 IPI:IPI00512421 UniGene:Dr.75060
SMR:Q6P105 STRING:Q6P105 Ensembl:ENSDART00000028610
InParanoid:Q6P105 Uniprot:Q6P105
Length = 359
Score = 200 (75.5 bits), Expect = 1.9e-21, Sum P(2) = 1.9e-21
Identities = 47/176 (26%), Positives = 95/176 (53%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L V +P++MT+ + ++F ++ +++DK T S G FV +ADKA+
Sbjct: 37 KTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAI 96
Query: 74 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + K + ++V YA + + L++ LPK +S+ ++ LFS YG I
Sbjct: 97 NTLNGLKL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKDMEQLFSQYGRIITS 153
Query: 133 QIL--RGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+IL + + S+G F++++ + +A A++ +NG+ + G++ P+ VK+A+ +
Sbjct: 154 RILVDQVTAGISRGVGFIRFDKRNEAEEAIKGLNGQKPL-GAAEPITVKFANNPSQ 208
Score = 118 (46.6 bits), Expect = 0.00031, P = 0.00031
Identities = 24/63 (38%), Positives = 35/63 (55%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
NL + ++PQ +E + F + G + S K+ DK TG S +GFV+Y P A AI
Sbjct: 39 NLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINT 98
Query: 411 MNG 413
+NG
Sbjct: 99 LNG 101
Score = 115 (45.5 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 19/65 (29%), Positives = 41/65 (63%)
Query: 350 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKAT-GVSKCFGFVSYESPASAQNAI 408
ANL++ +P+ +++ F +GR++++++ VD+ T G+S+ GF+ ++ A+ AI
Sbjct: 124 ANLYVSGLPKTMSQKDMEQLFSQYGRIITSRILVDQVTAGISRGVGFIRFDKRNEAEEAI 183
Query: 409 AMMNG 413
+NG
Sbjct: 184 KGLNG 188
Score = 114 (45.2 bits), Expect = 3.5e-11, Sum P(2) = 3.5e-11
Identities = 25/85 (29%), Positives = 48/85 (56%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRA-SRGCCFVICPSRQEADKAVNA 75
L+V +PK M++ + +F ++ + I+ D+ T SRG F+ R EA++A+
Sbjct: 126 LYVSGLPKTMSQKDMEQLFSQYGRIITSRILVDQVTAGISRGVGFIRFDKRNEAEEAIKG 185
Query: 76 CHNKKTLPGASSPLQVKYADGELER 100
+ +K L GA+ P+ VK+A+ ++
Sbjct: 186 LNGQKPL-GAAEPITVKFANNPSQK 209
Score = 112 (44.5 bits), Expect = 1.9e-21, Sum P(2) = 1.9e-21
Identities = 30/96 (31%), Positives = 42/96 (43%)
Query: 320 SVSPAVANSNPXXXXXXXXXXXXQIEGPPGAN--LFIYHIPQEFGDQELGNAFQAFGRVL 377
+ S V +P + GP GA +F+Y++ E + L F FG V
Sbjct: 244 NASYGVKRFSPITIDSMTSLAGVNLTGPTGAGWCIFVYNLSPEADESVLWQLFGPFGAVT 303
Query: 378 SAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 413
+ KV D T K FGFV+ + A AIA +NG
Sbjct: 304 NVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNG 339
Score = 81 (33.6 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 23/84 (27%), Positives = 39/84 (46%)
Query: 84 GASSPL-QVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQT 141
G S P V +G + + L + LP+N+++ E +LF G I+ +++R
Sbjct: 18 GTSLPNGPVISTNGATDDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQ 77
Query: 142 SKGCAFLKYETKEQALAALEAING 165
S G F+ Y A A+ +NG
Sbjct: 78 SLGYGFVNYVDPNDADKAINTLNG 101
Score = 65 (27.9 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 14/62 (22%), Positives = 32/62 (51%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 163
+F+ L E+ + LF +G + +++++R + KG F+ ++A A+ ++
Sbjct: 278 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 164 NG 165
NG
Sbjct: 338 NG 339
>UNIPROTKB|F1P022 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 EMBL:AADN02039408 EMBL:AADN02039409
EMBL:AADN02039410 EMBL:AADN02039411 EMBL:AADN02039412
EMBL:AADN02039413 EMBL:AADN02039414 EMBL:AADN02039415
EMBL:AADN02039416 EMBL:AADN02039417 EMBL:AADN02039418
EMBL:AADN02039419 EMBL:AADN02039420 EMBL:AADN02039421
EMBL:AADN02039422 EMBL:AADN02039423 EMBL:AADN02039424
EMBL:AADN02039425 EMBL:AADN02039426 EMBL:AADN02039427
EMBL:AADN02039428 EMBL:AADN02039429 EMBL:AADN02039430
EMBL:AADN02039431 EMBL:AADN02039432 EMBL:AADN02039433
IPI:IPI00574286 Ensembl:ENSGALT00000040033 ArrayExpress:F1P022
Uniprot:F1P022
Length = 325
Score = 198 (74.8 bits), Expect = 2.2e-21, Sum P(2) = 2.2e-21
Identities = 40/95 (42%), Positives = 62/95 (65%)
Query: 94 ADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYE 151
AD E + KLFIGM+ K +E ++ +FS +G I++ +ILRG S+GCAF+ +
Sbjct: 2 ADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFS 61
Query: 152 TKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
T+ A A++A++ MEG S P+VVK+ADT+K+
Sbjct: 62 TRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKD 96
Score = 171 (65.3 bits), Expect = 6.6e-18, Sum P(2) = 6.6e-18
Identities = 42/133 (31%), Positives = 69/133 (51%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLF+G V K E + MF F ++E I++ SRGC FV +R A A+ A
Sbjct: 14 KLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDG-LSRGCAFVTFSTRAMAQNAIKA 72
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKLF--IGMLPKNVSEAEVSALFSIYG-TIKDL 132
H +T+ G SSP+ VK+AD + ++ + +L + + ++ A L + G T + L
Sbjct: 73 MHQSQTMEGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQLNTATWGNLTGLGGLTPQYL 132
Query: 133 QILRGSQQTSKGC 145
+L+ + +S GC
Sbjct: 133 ALLQQATSSSNGC 145
Score = 110 (43.8 bits), Expect = 2.2e-21, Sum P(2) = 2.2e-21
Identities = 19/24 (79%), Positives = 22/24 (91%)
Query: 343 QIEGPPGANLFIYHIPQEFGDQEL 366
Q EGP GANLFIYH+PQEFGDQ++
Sbjct: 299 QKEGPEGANLFIYHLPQEFGDQDI 322
>TAIR|locus:2065190 [details] [associations]
symbol:AT2G47310 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR001202
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397 PROSITE:PS01159
PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360 SMART:SM00456
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:2.20.70.10 SUPFAM:SSF51045
EMBL:BT015132 EMBL:BT015799 EMBL:AK229352 IPI:IPI00531580
RefSeq:NP_850472.1 UniGene:At.36378 ProteinModelPortal:Q6AWW6
SMR:Q6AWW6 PRIDE:Q6AWW6 EnsemblPlants:AT2G47310.1 GeneID:819344
KEGG:ath:AT2G47310 TAIR:At2g47310 HOGENOM:HOG000084673
InParanoid:Q6AWW6 OMA:RERIGFA PhylomeDB:Q6AWW6
ProtClustDB:CLSN2918289 Genevestigator:Q6AWW6 Uniprot:Q6AWW6
Length = 512
Score = 266 (98.7 bits), Expect = 5.6e-21, P = 5.6e-21
Identities = 59/179 (32%), Positives = 101/179 (56%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KL+V + K TE + +F+++ V E+ + KDK T CF+ +E + A+ A
Sbjct: 111 KLYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKMTGERAAYCFIKYKKVEEGNAAIAA 170
Query: 76 CHNKKTLPGASSPLQVKYADGELERL---------EHKLFIGMLPKNVSEAEVSALFSIY 126
+ T PG P++V++A+ E ER+ KL++ L K ++ EV+ +FS Y
Sbjct: 171 LTEQFTFPGEMLPVKVRFAEAERERIGFAPVQLPDNPKLYVRCLNKQTTKMEVNEVFSRY 230
Query: 127 GTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEK 185
G I+D+ + + +G AF+++ KE ALAA++A+NG + GS PL+V++AD +K
Sbjct: 231 GIIEDIYMALDDMKICRGYAFVQFSCKEMALAAIKALNGLFTIRGSDQPLIVRFADPKK 289
>UNIPROTKB|Q5U259 [details] [associations]
symbol:elavl1-b "ELAV-like protein 1-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005938 "cell cortex" evidence=IDA] [GO:0007369
"gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA binding"
evidence=ISS] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0051259 "protein
oligomerization" evidence=ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 KO:K13088
TIGRFAMs:TIGR01661 EMBL:BC086269 RefSeq:NP_001088628.1
UniGene:Xl.22886 ProteinModelPortal:Q5U259 SMR:Q5U259 PRIDE:Q5U259
GeneID:495680 KEGG:xla:495680 CTD:495680 Xenbase:XB-GENE-865489
Uniprot:Q5U259
Length = 326
Score = 204 (76.9 bits), Expect = 1.3e-20, Sum P(2) = 1.3e-20
Identities = 51/171 (29%), Positives = 96/171 (56%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
R L V +P++MT+ +L ++F V+ +I+DK S G FV + ++A++A+
Sbjct: 19 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAI 78
Query: 74 NACHNKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + + S ++V +A E ++ L+I LP+ +++ +V +F +G I +
Sbjct: 79 NTLNGLRL---QSKTIKVSFARPSSETIKDANLYISGLPRTMTQKDVEDMFLPFGHIINS 135
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181
++L Q T S+G AF++++ + +A A+ + NG HK GSS P+ VK+A
Sbjct: 136 RVLV-DQATGLSRGVAFIRFDKRSEAEEAIASFNG-HKPPGSSEPITVKFA 184
Score = 124 (48.7 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 22/64 (34%), Positives = 42/64 (65%)
Query: 350 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 409
ANL+I +P+ +++ + F FG +++++V VD+ATG+S+ F+ ++ + A+ AIA
Sbjct: 106 ANLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIA 165
Query: 410 MMNG 413
NG
Sbjct: 166 SFNG 169
Score = 118 (46.6 bits), Expect = 0.00026, P = 0.00026
Identities = 25/63 (39%), Positives = 36/63 (57%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
NL + ++PQ EL + F + G V SAK+ DK G S +GFV+Y + A+ AI
Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINT 80
Query: 411 MNG 413
+NG
Sbjct: 81 LNG 83
Score = 95 (38.5 bits), Expect = 1.3e-20, Sum P(2) = 1.3e-20
Identities = 24/62 (38%), Positives = 33/62 (53%)
Query: 352 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 411
+FIY++ Q+ + L F FG V + KV D T K FGFV+ + A AIA +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 412 NG 413
NG
Sbjct: 306 NG 307
>MGI|MGI:109157 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=ISO;IDA] [GO:0030154 "cell
differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109157 GO:GO:0007399 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OMA:ARRYTGP
ChiTaRS:ELAVL3 EMBL:U29148 EMBL:U29149 EMBL:BC052097
IPI:IPI00122451 IPI:IPI00222990 RefSeq:NP_034617.1
UniGene:Mm.390167 PDB:1D8Z PDB:1D9A PDB:1FNX PDBsum:1D8Z
PDBsum:1D9A PDBsum:1FNX ProteinModelPortal:Q60900 SMR:Q60900
STRING:Q60900 PhosphoSite:Q60900 PaxDb:Q60900 PRIDE:Q60900
Ensembl:ENSMUST00000003501 GeneID:15571 KEGG:mmu:15571
UCSC:uc009onl.2 UCSC:uc009onn.1 InParanoid:Q60900 OrthoDB:EOG43R3N0
EvolutionaryTrace:Q60900 NextBio:288556 Bgee:Q60900
Genevestigator:Q60900 GermOnline:ENSMUSG00000003410 Uniprot:Q60900
Length = 367
Score = 202 (76.2 bits), Expect = 1.8e-20, Sum P(2) = 1.8e-20
Identities = 50/176 (28%), Positives = 95/176 (53%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L V +P++MT+ + ++F ++ +++DK T S G FV +ADKA+
Sbjct: 38 KTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAI 97
Query: 74 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + K + ++V YA + + L++ LPK +S+ E+ LFS YG I
Sbjct: 98 NTLNGLKL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITS 154
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+IL Q T S+G F++++ + +A A++ +NG+ + G++ P+ VK+A+ +
Sbjct: 155 RILL-DQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL-GAAEPITVKFANNPSQ 208
Score = 130 (50.8 bits), Expect = 8.8e-10, Sum P(2) = 8.8e-10
Identities = 21/64 (32%), Positives = 42/64 (65%)
Query: 350 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 409
ANL++ +P+ +E+ F +GR++++++ +D+ATGVS+ GF+ ++ A+ AI
Sbjct: 125 ANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIK 184
Query: 410 MMNG 413
+NG
Sbjct: 185 GLNG 188
Score = 121 (47.7 bits), Expect = 8.1e-11, Sum P(2) = 8.1e-11
Identities = 25/84 (29%), Positives = 49/84 (58%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+V +PK M++ ++ +F ++ + I+ D+ T SRG F+ R EA++A+
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 77 HNKKTLPGASSPLQVKYADGELER 100
+ +K L GA+ P+ VK+A+ ++
Sbjct: 187 NGQKPL-GAAEPITVKFANNPSQK 209
Score = 116 (45.9 bits), Expect = 0.00054, P = 0.00054
Identities = 24/63 (38%), Positives = 34/63 (53%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
NL + ++PQ E + F + G + S K+ DK TG S +GFV+Y P A AI
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 411 MNG 413
+NG
Sbjct: 100 LNG 102
Score = 101 (40.6 bits), Expect = 1.8e-20, Sum P(2) = 1.8e-20
Identities = 33/105 (31%), Positives = 46/105 (43%)
Query: 314 LNNSPGSVSPA--VANSNPXXXXXXXXXXXXQIEG-PPGAN--LFIYHIPQEFGDQELGN 368
LN + G SP +A +P + G GA +F+Y++ E + L
Sbjct: 243 LNMAYGVKSPLSLIARFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLWQ 302
Query: 369 AFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 413
F FG V + KV D T K FGFV+ + A AIA +NG
Sbjct: 303 LFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNG 347
Score = 81 (33.6 bits), Expect = 8.8e-10, Sum P(2) = 8.8e-10
Identities = 19/72 (26%), Positives = 35/72 (48%)
Query: 95 DGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETK 153
+G + + L + LP+N+++ E +LF G I+ +++R S G F+ Y
Sbjct: 31 NGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDP 90
Query: 154 EQALAALEAING 165
A A+ +NG
Sbjct: 91 NDADKAINTLNG 102
Score = 65 (27.9 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
Identities = 14/62 (22%), Positives = 32/62 (51%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 163
+F+ L E+ + LF +G + +++++R + KG F+ ++A A+ ++
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 164 NG 165
NG
Sbjct: 346 NG 347
>RGD|628892 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:628892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 HSSP:P19339 eggNOG:COG0724 EMBL:CH473993
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OrthoDB:EOG43R3N0
EMBL:AB097198 IPI:IPI00192527 RefSeq:NP_758827.1 UniGene:Rn.22586
SMR:Q76IJ9 STRING:Q76IJ9 Ensembl:ENSRNOT00000018416 GeneID:282824
KEGG:rno:282824 UCSC:RGD:628892 InParanoid:Q76IJ9 NextBio:624869
Genevestigator:Q76IJ9 Uniprot:Q76IJ9
Length = 367
Score = 202 (76.2 bits), Expect = 1.8e-20, Sum P(2) = 1.8e-20
Identities = 50/176 (28%), Positives = 95/176 (53%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L V +P++MT+ + ++F ++ +++DK T S G FV +ADKA+
Sbjct: 38 KTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAI 97
Query: 74 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + K + ++V YA + + L++ LPK +S+ E+ LFS YG I
Sbjct: 98 NTLNGLKL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITS 154
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+IL Q T S+G F++++ + +A A++ +NG+ + G++ P+ VK+A+ +
Sbjct: 155 RILL-DQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL-GAAEPITVKFANNPSQ 208
Score = 130 (50.8 bits), Expect = 8.8e-10, Sum P(2) = 8.8e-10
Identities = 21/64 (32%), Positives = 42/64 (65%)
Query: 350 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 409
ANL++ +P+ +E+ F +GR++++++ +D+ATGVS+ GF+ ++ A+ AI
Sbjct: 125 ANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIK 184
Query: 410 MMNG 413
+NG
Sbjct: 185 GLNG 188
Score = 121 (47.7 bits), Expect = 8.1e-11, Sum P(2) = 8.1e-11
Identities = 25/84 (29%), Positives = 49/84 (58%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+V +PK M++ ++ +F ++ + I+ D+ T SRG F+ R EA++A+
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 77 HNKKTLPGASSPLQVKYADGELER 100
+ +K L GA+ P+ VK+A+ ++
Sbjct: 187 NGQKPL-GAAEPITVKFANNPSQK 209
Score = 116 (45.9 bits), Expect = 0.00054, P = 0.00054
Identities = 24/63 (38%), Positives = 34/63 (53%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
NL + ++PQ E + F + G + S K+ DK TG S +GFV+Y P A AI
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 411 MNG 413
+NG
Sbjct: 100 LNG 102
Score = 101 (40.6 bits), Expect = 1.8e-20, Sum P(2) = 1.8e-20
Identities = 33/105 (31%), Positives = 46/105 (43%)
Query: 314 LNNSPGSVSPA--VANSNPXXXXXXXXXXXXQIEG-PPGAN--LFIYHIPQEFGDQELGN 368
LN + G SP +A +P + G GA +F+Y++ E + L
Sbjct: 243 LNMAYGVKSPLSLIARFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLWQ 302
Query: 369 AFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 413
F FG V + KV D T K FGFV+ + A AIA +NG
Sbjct: 303 LFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNG 347
Score = 81 (33.6 bits), Expect = 8.8e-10, Sum P(2) = 8.8e-10
Identities = 19/72 (26%), Positives = 35/72 (48%)
Query: 95 DGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETK 153
+G + + L + LP+N+++ E +LF G I+ +++R S G F+ Y
Sbjct: 31 NGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDP 90
Query: 154 EQALAALEAING 165
A A+ +NG
Sbjct: 91 NDADKAINTLNG 102
Score = 65 (27.9 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
Identities = 14/62 (22%), Positives = 32/62 (51%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 163
+F+ L E+ + LF +G + +++++R + KG F+ ++A A+ ++
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 164 NG 165
NG
Sbjct: 346 NG 347
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 197 (74.4 bits), Expect = 2.4e-20, Sum P(2) = 2.4e-20
Identities = 49/176 (27%), Positives = 97/176 (55%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L V +P++MT+ +L ++F ++ +++DK T S G FV ++A+KA+
Sbjct: 38 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 97
Query: 74 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + + + ++V YA + + L++ LPK +++ E+ LFS YG I
Sbjct: 98 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 154
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+IL Q T S+G F++++ + +A A++ +NG+ K G++ P+ VK+A+ +
Sbjct: 155 RILV-DQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ-KPPGATEPITVKFANNPSQ 208
Score = 129 (50.5 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
Identities = 27/84 (32%), Positives = 49/84 (58%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+V +PK MT+ +L +F ++ + I+ D+ T SRG F+ R EA++A+
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 77 HNKKTLPGASSPLQVKYADGELER 100
+ +K PGA+ P+ VK+A+ ++
Sbjct: 187 NGQKP-PGATEPITVKFANNPSQK 209
Score = 128 (50.1 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 21/64 (32%), Positives = 41/64 (64%)
Query: 350 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 409
ANL++ +P+ +EL F +GR++++++ VD+ TG+S+ GF+ ++ A+ AI
Sbjct: 125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184
Query: 410 MMNG 413
+NG
Sbjct: 185 GLNG 188
Score = 124 (48.7 bits), Expect = 6.6e-05, P = 6.6e-05
Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
NL + ++PQ +EL + F + G + S K+ DK TG S +GFV+Y P A+ AI
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 411 MNG 413
+NG
Sbjct: 100 LNG 102
Score = 105 (42.0 bits), Expect = 2.4e-20, Sum P(2) = 2.4e-20
Identities = 35/120 (29%), Positives = 51/120 (42%)
Query: 296 PGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGAN--LF 353
P +YP P R L+N +++ V +P I G PG +F
Sbjct: 222 PNRRYPGPLAQQAQRFR-LDNLL-NMAYGVKRFSPMTIDGMTSLAGINIPGHPGTGWCIF 279
Query: 354 IYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 413
+Y++ + + L F FG V + KV D T K FGFV+ + A AIA +NG
Sbjct: 280 VYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 339
Score = 88 (36.0 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 25/94 (26%), Positives = 44/94 (46%)
Query: 74 NACHNKKTLPG-ASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + T+ SSP+ G E + L + LP+N+++ E+ +LF G I+
Sbjct: 13 NTANGPTTINNNCSSPVD----SGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESC 68
Query: 133 QILRGS-QQTSKGCAFLKYETKEQALAALEAING 165
+++R S G F+ Y + A A+ +NG
Sbjct: 69 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 102
Score = 63 (27.2 bits), Expect = 7.6e-08, Sum P(2) = 7.6e-08
Identities = 13/62 (20%), Positives = 33/62 (53%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 163
+F+ L + E+ + +F +G + +++++R + KG F+ ++A A+ ++
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 164 NG 165
NG
Sbjct: 338 NG 339
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 197 (74.4 bits), Expect = 2.5e-20, Sum P(2) = 2.5e-20
Identities = 49/176 (27%), Positives = 97/176 (55%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L V +P++MT+ +L ++F ++ +++DK T S G FV ++A+KA+
Sbjct: 38 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 97
Query: 74 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + + + ++V YA + + L++ LPK +++ E+ LFS YG I
Sbjct: 98 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 154
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+IL Q T S+G F++++ + +A A++ +NG+ K G++ P+ VK+A+ +
Sbjct: 155 RILV-DQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ-KPPGATEPITVKFANNPSQ 208
Score = 129 (50.5 bits), Expect = 3.6e-12, Sum P(2) = 3.6e-12
Identities = 27/84 (32%), Positives = 49/84 (58%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+V +PK MT+ +L +F ++ + I+ D+ T SRG F+ R EA++A+
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 77 HNKKTLPGASSPLQVKYADGELER 100
+ +K PGA+ P+ VK+A+ ++
Sbjct: 187 NGQKP-PGATEPITVKFANNPSQK 209
Score = 128 (50.1 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 21/64 (32%), Positives = 41/64 (64%)
Query: 350 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 409
ANL++ +P+ +EL F +GR++++++ VD+ TG+S+ GF+ ++ A+ AI
Sbjct: 125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184
Query: 410 MMNG 413
+NG
Sbjct: 185 GLNG 188
Score = 124 (48.7 bits), Expect = 6.7e-05, P = 6.7e-05
Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
NL + ++PQ +EL + F + G + S K+ DK TG S +GFV+Y P A+ AI
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 411 MNG 413
+NG
Sbjct: 100 LNG 102
Score = 105 (42.0 bits), Expect = 2.5e-20, Sum P(2) = 2.5e-20
Identities = 34/120 (28%), Positives = 48/120 (40%)
Query: 296 PGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGAN--LF 353
P +YP P R L+N + +P I G PG +F
Sbjct: 222 PNRRYPGPLAQQAQRFR-LDNLLNMAYGVKSRFSPMTIDGMTSLAGINIPGHPGTGWCIF 280
Query: 354 IYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 413
+Y++ + + L F FG V + KV D T K FGFV+ + A AIA +NG
Sbjct: 281 VYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 340
Score = 87 (35.7 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 23/81 (28%), Positives = 40/81 (49%)
Query: 86 SSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKG 144
SSP+ G E + L + LP+N+++ E+ +LF G I+ +++R S G
Sbjct: 26 SSPVD----SGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLG 81
Query: 145 CAFLKYETKEQALAALEAING 165
F+ Y + A A+ +NG
Sbjct: 82 YGFVNYIDPKDAEKAINTLNG 102
Score = 63 (27.2 bits), Expect = 7.7e-08, Sum P(2) = 7.7e-08
Identities = 13/62 (20%), Positives = 33/62 (53%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 163
+F+ L + E+ + +F +G + +++++R + KG F+ ++A A+ ++
Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338
Query: 164 NG 165
NG
Sbjct: 339 NG 340
>UNIPROTKB|K7EQ97 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:14015 EMBL:AC015961 EMBL:AC090386
EMBL:AC093332 EMBL:AC129908 Ensembl:ENST00000587819 Uniprot:K7EQ97
Length = 154
Score = 242 (90.2 bits), Expect = 2.9e-20, P = 2.9e-20
Identities = 51/99 (51%), Positives = 67/99 (67%)
Query: 88 PLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAF 147
P+QVK AD E R + KLF+GML K SE +V LF +G I++ ILRG SKGCAF
Sbjct: 4 PIQVKPADSE-SRGDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAF 62
Query: 148 LKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+KY + +A AA+ A++G M G+S LVVK+ADT+KE
Sbjct: 63 VKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKE 101
Score = 170 (64.9 bits), Expect = 3.3e-12, P = 3.3e-12
Identities = 36/90 (40%), Positives = 53/90 (58%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFVG + K +E + +F+ F ++E I++ S+GC FV S EA A+NA
Sbjct: 19 KLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGN-SKGCAFVKYSSHAEAQAAINA 77
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKL 105
H +T+PGASS L VK+AD + ER ++
Sbjct: 78 LHGSQTMPGASSSLVVKFADTDKERTMRRM 107
>UNIPROTKB|F1PVV1 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:AAEX03012413
Ensembl:ENSCAFT00000027494 Uniprot:F1PVV1
Length = 367
Score = 200 (75.5 bits), Expect = 3.1e-20, Sum P(2) = 3.1e-20
Identities = 50/176 (28%), Positives = 95/176 (53%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L V +P++MT+ + ++F ++ +++DK T S G FV +ADKA+
Sbjct: 38 KTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAI 97
Query: 74 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + K + ++V YA + + L++ LPK +S+ E+ LFS YG I
Sbjct: 98 NTLNGLKL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITS 154
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+IL Q T S+G F++++ + +A A++ +NG+ + G++ P+ VK+A+ +
Sbjct: 155 RILV-DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL-GAAEPITVKFANNPSQ 208
Score = 129 (50.5 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 21/64 (32%), Positives = 41/64 (64%)
Query: 350 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 409
ANL++ +P+ +E+ F +GR++++++ VD+ TGVS+ GF+ ++ A+ AI
Sbjct: 125 ANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 184
Query: 410 MMNG 413
+NG
Sbjct: 185 GLNG 188
Score = 121 (47.7 bits), Expect = 8.1e-11, Sum P(2) = 8.1e-11
Identities = 25/84 (29%), Positives = 49/84 (58%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+V +PK M++ ++ +F ++ + I+ D+ T SRG F+ R EA++A+
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 77 HNKKTLPGASSPLQVKYADGELER 100
+ +K L GA+ P+ VK+A+ ++
Sbjct: 187 NGQKPL-GAAEPITVKFANNPSQK 209
Score = 116 (45.9 bits), Expect = 0.00054, P = 0.00054
Identities = 24/63 (38%), Positives = 34/63 (53%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
NL + ++PQ E + F + G + S K+ DK TG S +GFV+Y P A AI
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 411 MNG 413
+NG
Sbjct: 100 LNG 102
Score = 101 (40.6 bits), Expect = 3.1e-20, Sum P(2) = 3.1e-20
Identities = 33/105 (31%), Positives = 46/105 (43%)
Query: 314 LNNSPGSVSPA--VANSNPXXXXXXXXXXXXQIEG-PPGAN--LFIYHIPQEFGDQELGN 368
LN + G SP +A +P + G GA +F+Y++ E + L
Sbjct: 243 LNMAYGVKSPLSLIARFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLWQ 302
Query: 369 AFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 413
F FG V + KV D T K FGFV+ + A AIA +NG
Sbjct: 303 LFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNG 347
Score = 81 (33.6 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 19/72 (26%), Positives = 35/72 (48%)
Query: 95 DGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETK 153
+G + + L + LP+N+++ E +LF G I+ +++R S G F+ Y
Sbjct: 31 NGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDP 90
Query: 154 EQALAALEAING 165
A A+ +NG
Sbjct: 91 NDADKAINTLNG 102
Score = 65 (27.9 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
Identities = 14/62 (22%), Positives = 32/62 (51%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 163
+F+ L E+ + LF +G + +++++R + KG F+ ++A A+ ++
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 164 NG 165
NG
Sbjct: 346 NG 347
>UNIPROTKB|Q14576 [details] [associations]
symbol:ELAVL3 "ELAV-like protein 3" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0007399 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
KO:K13208 EMBL:L26405 EMBL:AY036909 EMBL:AC008481 EMBL:BC014144
EMBL:D26158 IPI:IPI00031552 IPI:IPI00140449 RefSeq:NP_001411.2
RefSeq:NP_115657.2 UniGene:Hs.1701 ProteinModelPortal:Q14576
SMR:Q14576 IntAct:Q14576 MINT:MINT-1471958 STRING:Q14576
PhosphoSite:Q14576 DMDM:21264436 PaxDb:Q14576 PRIDE:Q14576
Ensembl:ENST00000359227 Ensembl:ENST00000438662 GeneID:1995
KEGG:hsa:1995 UCSC:uc002mrx.1 UCSC:uc002mry.1 CTD:1995
GeneCards:GC19M011562 HGNC:HGNC:3314 HPA:CAB013066 MIM:603458
neXtProt:NX_Q14576 PharmGKB:PA27742 InParanoid:Q14576 OMA:ARRYTGP
PhylomeDB:Q14576 ChiTaRS:ELAVL3 GenomeRNAi:1995 NextBio:8067
ArrayExpress:Q14576 Bgee:Q14576 CleanEx:HS_ELAVL3
Genevestigator:Q14576 GermOnline:ENSG00000196361 Uniprot:Q14576
Length = 367
Score = 200 (75.5 bits), Expect = 3.1e-20, Sum P(2) = 3.1e-20
Identities = 50/176 (28%), Positives = 95/176 (53%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L V +P++MT+ + ++F ++ +++DK T S G FV +ADKA+
Sbjct: 38 KTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAI 97
Query: 74 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + K + ++V YA + + L++ LPK +S+ E+ LFS YG I
Sbjct: 98 NTLNGLKL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITS 154
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+IL Q T S+G F++++ + +A A++ +NG+ + G++ P+ VK+A+ +
Sbjct: 155 RILV-DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL-GAAEPITVKFANNPSQ 208
Score = 129 (50.5 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 21/64 (32%), Positives = 41/64 (64%)
Query: 350 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 409
ANL++ +P+ +E+ F +GR++++++ VD+ TGVS+ GF+ ++ A+ AI
Sbjct: 125 ANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 184
Query: 410 MMNG 413
+NG
Sbjct: 185 GLNG 188
Score = 121 (47.7 bits), Expect = 8.1e-11, Sum P(2) = 8.1e-11
Identities = 25/84 (29%), Positives = 49/84 (58%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+V +PK M++ ++ +F ++ + I+ D+ T SRG F+ R EA++A+
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 77 HNKKTLPGASSPLQVKYADGELER 100
+ +K L GA+ P+ VK+A+ ++
Sbjct: 187 NGQKPL-GAAEPITVKFANNPSQK 209
Score = 116 (45.9 bits), Expect = 0.00054, P = 0.00054
Identities = 24/63 (38%), Positives = 34/63 (53%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
NL + ++PQ E + F + G + S K+ DK TG S +GFV+Y P A AI
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 411 MNG 413
+NG
Sbjct: 100 LNG 102
Score = 101 (40.6 bits), Expect = 3.1e-20, Sum P(2) = 3.1e-20
Identities = 33/105 (31%), Positives = 46/105 (43%)
Query: 314 LNNSPGSVSPA--VANSNPXXXXXXXXXXXXQIEG-PPGAN--LFIYHIPQEFGDQELGN 368
LN + G SP +A +P + G GA +F+Y++ E + L
Sbjct: 243 LNMAYGVKSPLSLIARFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLWQ 302
Query: 369 AFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 413
F FG V + KV D T K FGFV+ + A AIA +NG
Sbjct: 303 LFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNG 347
Score = 81 (33.6 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 19/72 (26%), Positives = 35/72 (48%)
Query: 95 DGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETK 153
+G + + L + LP+N+++ E +LF G I+ +++R S G F+ Y
Sbjct: 31 NGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDP 90
Query: 154 EQALAALEAING 165
A A+ +NG
Sbjct: 91 NDADKAINTLNG 102
Score = 65 (27.9 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
Identities = 14/62 (22%), Positives = 32/62 (51%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 163
+F+ L E+ + LF +G + +++++R + KG F+ ++A A+ ++
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 164 NG 165
NG
Sbjct: 346 NG 347
>UNIPROTKB|Q6GLB5 [details] [associations]
symbol:elavl1 "ELAV-like protein 1" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005938 "cell cortex" evidence=ISS]
[GO:0007369 "gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA
binding" evidence=ISS] [GO:0008298 "intracellular mRNA
localization" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0051259 "protein oligomerization" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0005634 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 GO:GO:0007369 eggNOG:COG0724
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:BC074585
RefSeq:NP_001005461.1 UniGene:Str.2596 ProteinModelPortal:Q6GLB5
SMR:Q6GLB5 STRING:Q6GLB5 PRIDE:Q6GLB5 GeneID:448062 KEGG:xtr:448062
Xenbase:XB-GENE-481800 InParanoid:Q6GLB5 Uniprot:Q6GLB5
Length = 326
Score = 201 (75.8 bits), Expect = 3.3e-20, Sum P(2) = 3.3e-20
Identities = 51/171 (29%), Positives = 95/171 (55%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
R L V +P++MT+ +L ++F V+ +I+DK S G FV + ++A++A+
Sbjct: 19 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAI 78
Query: 74 NACHNKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + + S ++V A E ++ L+I LP+ +++ +V +F +G I +
Sbjct: 79 NTLNGLRL---QSKTIKVSVARPSSESIKDANLYISGLPRTMTQKDVEDMFLPFGRIINS 135
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181
++L Q T S+G AF++++ + +A A+ + NG HK GSS P+ VK+A
Sbjct: 136 RVLV-DQATGLSRGVAFIRFDKRSEAEEAIASFNG-HKPPGSSEPITVKFA 184
Score = 129 (50.5 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 23/64 (35%), Positives = 43/64 (67%)
Query: 350 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 409
ANL+I +P+ +++ + F FGR+++++V VD+ATG+S+ F+ ++ + A+ AIA
Sbjct: 106 ANLYISGLPRTMTQKDVEDMFLPFGRIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIA 165
Query: 410 MMNG 413
NG
Sbjct: 166 SFNG 169
Score = 118 (46.6 bits), Expect = 0.00026, P = 0.00026
Identities = 25/63 (39%), Positives = 36/63 (57%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
NL + ++PQ EL + F + G V SAK+ DK G S +GFV+Y + A+ AI
Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINT 80
Query: 411 MNG 413
+NG
Sbjct: 81 LNG 83
Score = 95 (38.5 bits), Expect = 3.3e-20, Sum P(2) = 3.3e-20
Identities = 24/62 (38%), Positives = 33/62 (53%)
Query: 352 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 411
+FIY++ Q+ + L F FG V + KV D T K FGFV+ + A AIA +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 412 NG 413
NG
Sbjct: 306 NG 307
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 197 (74.4 bits), Expect = 4.1e-20, Sum P(2) = 4.1e-20
Identities = 49/176 (27%), Positives = 97/176 (55%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L V +P++MT+ +L ++F ++ +++DK T S G FV ++A+KA+
Sbjct: 66 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 125
Query: 74 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + + + ++V YA + + L++ LPK +++ E+ LFS YG I
Sbjct: 126 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 182
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+IL Q T S+G F++++ + +A A++ +NG+ K G++ P+ VK+A+ +
Sbjct: 183 RILV-DQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ-KPPGATEPITVKFANNPSQ 236
Score = 129 (50.5 bits), Expect = 4.6e-12, Sum P(2) = 4.6e-12
Identities = 27/84 (32%), Positives = 49/84 (58%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+V +PK MT+ +L +F ++ + I+ D+ T SRG F+ R EA++A+
Sbjct: 155 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 214
Query: 77 HNKKTLPGASSPLQVKYADGELER 100
+ +K PGA+ P+ VK+A+ ++
Sbjct: 215 NGQKP-PGATEPITVKFANNPSQK 237
Score = 128 (50.1 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
Identities = 21/64 (32%), Positives = 41/64 (64%)
Query: 350 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 409
ANL++ +P+ +EL F +GR++++++ VD+ TG+S+ GF+ ++ A+ AI
Sbjct: 153 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 212
Query: 410 MMNG 413
+NG
Sbjct: 213 GLNG 216
Score = 124 (48.7 bits), Expect = 7.6e-05, P = 7.6e-05
Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
NL + ++PQ +EL + F + G + S K+ DK TG S +GFV+Y P A+ AI
Sbjct: 68 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 127
Query: 411 MNG 413
+NG
Sbjct: 128 LNG 130
Score = 105 (42.0 bits), Expect = 4.1e-20, Sum P(2) = 4.1e-20
Identities = 35/120 (29%), Positives = 51/120 (42%)
Query: 296 PGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGAN--LF 353
P +YP P R L+N +++ V +P I G PG +F
Sbjct: 250 PNRRYPGPLAQQAQRFR-LDNLL-NMAYGVKRFSPMTIDGMTSLAGINIPGHPGTGWCIF 307
Query: 354 IYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 413
+Y++ + + L F FG V + KV D T K FGFV+ + A AIA +NG
Sbjct: 308 VYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 367
Score = 88 (36.0 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
Identities = 25/94 (26%), Positives = 44/94 (46%)
Query: 74 NACHNKKTLPG-ASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + T+ SSP+ G E + L + LP+N+++ E+ +LF G I+
Sbjct: 41 NTANGPTTINNNCSSPVD----SGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESC 96
Query: 133 QILRGS-QQTSKGCAFLKYETKEQALAALEAING 165
+++R S G F+ Y + A A+ +NG
Sbjct: 97 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 130
Score = 63 (27.2 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 13/62 (20%), Positives = 33/62 (53%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 163
+F+ L + E+ + +F +G + +++++R + KG F+ ++A A+ ++
Sbjct: 306 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 365
Query: 164 NG 165
NG
Sbjct: 366 NG 367
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 197 (74.4 bits), Expect = 4.2e-20, Sum P(2) = 4.2e-20
Identities = 49/176 (27%), Positives = 97/176 (55%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L V +P++MT+ +L ++F ++ +++DK T S G FV ++A+KA+
Sbjct: 67 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 126
Query: 74 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + + + ++V YA + + L++ LPK +++ E+ LFS YG I
Sbjct: 127 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 183
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+IL Q T S+G F++++ + +A A++ +NG+ K G++ P+ VK+A+ +
Sbjct: 184 RILV-DQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ-KPPGATEPITVKFANNPSQ 237
Score = 129 (50.5 bits), Expect = 4.7e-12, Sum P(2) = 4.7e-12
Identities = 27/84 (32%), Positives = 49/84 (58%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+V +PK MT+ +L +F ++ + I+ D+ T SRG F+ R EA++A+
Sbjct: 156 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 215
Query: 77 HNKKTLPGASSPLQVKYADGELER 100
+ +K PGA+ P+ VK+A+ ++
Sbjct: 216 NGQKP-PGATEPITVKFANNPSQK 238
Score = 128 (50.1 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 21/64 (32%), Positives = 41/64 (64%)
Query: 350 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 409
ANL++ +P+ +EL F +GR++++++ VD+ TG+S+ GF+ ++ A+ AI
Sbjct: 154 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 213
Query: 410 MMNG 413
+NG
Sbjct: 214 GLNG 217
Score = 124 (48.7 bits), Expect = 7.7e-05, P = 7.7e-05
Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
NL + ++PQ +EL + F + G + S K+ DK TG S +GFV+Y P A+ AI
Sbjct: 69 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 128
Query: 411 MNG 413
+NG
Sbjct: 129 LNG 131
Score = 105 (42.0 bits), Expect = 4.2e-20, Sum P(2) = 4.2e-20
Identities = 34/120 (28%), Positives = 48/120 (40%)
Query: 296 PGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGAN--LF 353
P +YP P R L+N + +P I G PG +F
Sbjct: 251 PNRRYPGPLAQQAQRFR-LDNLLNMAYGVKSRFSPMTIDGMTSLAGINIPGHPGTGWCIF 309
Query: 354 IYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 413
+Y++ + + L F FG V + KV D T K FGFV+ + A AIA +NG
Sbjct: 310 VYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 369
Score = 88 (36.0 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 25/94 (26%), Positives = 44/94 (46%)
Query: 74 NACHNKKTLPG-ASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + T+ SSP+ G E + L + LP+N+++ E+ +LF G I+
Sbjct: 42 NTANGPTTINNNCSSPVD----SGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESC 97
Query: 133 QILRGS-QQTSKGCAFLKYETKEQALAALEAING 165
+++R S G F+ Y + A A+ +NG
Sbjct: 98 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 131
Score = 68 (29.0 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
Identities = 19/82 (23%), Positives = 42/82 (51%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 163
+F+ L + E+ + +F +G + +++++R + KG F+ ++A A+ ++
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 164 NGKHKMEGSSVPLVVKWADTEK 185
NG +++ G V V K T K
Sbjct: 368 NG-YRL-GDRVLQVFKTNKTHK 387
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 197 (74.4 bits), Expect = 4.2e-20, Sum P(2) = 4.2e-20
Identities = 49/176 (27%), Positives = 97/176 (55%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L V +P++MT+ +L ++F ++ +++DK T S G FV ++A+KA+
Sbjct: 67 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 126
Query: 74 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + + + ++V YA + + L++ LPK +++ E+ LFS YG I
Sbjct: 127 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 183
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+IL Q T S+G F++++ + +A A++ +NG+ K G++ P+ VK+A+ +
Sbjct: 184 RILV-DQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ-KPPGATEPITVKFANNPSQ 237
Score = 129 (50.5 bits), Expect = 4.7e-12, Sum P(2) = 4.7e-12
Identities = 27/84 (32%), Positives = 49/84 (58%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+V +PK MT+ +L +F ++ + I+ D+ T SRG F+ R EA++A+
Sbjct: 156 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 215
Query: 77 HNKKTLPGASSPLQVKYADGELER 100
+ +K PGA+ P+ VK+A+ ++
Sbjct: 216 NGQKP-PGATEPITVKFANNPSQK 238
Score = 128 (50.1 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 21/64 (32%), Positives = 41/64 (64%)
Query: 350 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 409
ANL++ +P+ +EL F +GR++++++ VD+ TG+S+ GF+ ++ A+ AI
Sbjct: 154 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 213
Query: 410 MMNG 413
+NG
Sbjct: 214 GLNG 217
Score = 124 (48.7 bits), Expect = 7.7e-05, P = 7.7e-05
Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
NL + ++PQ +EL + F + G + S K+ DK TG S +GFV+Y P A+ AI
Sbjct: 69 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 128
Query: 411 MNG 413
+NG
Sbjct: 129 LNG 131
Score = 105 (42.0 bits), Expect = 4.2e-20, Sum P(2) = 4.2e-20
Identities = 35/120 (29%), Positives = 51/120 (42%)
Query: 296 PGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGAN--LF 353
P +YP P R L+N +++ V +P I G PG +F
Sbjct: 251 PNRRYPGPLAQQAQRFR-LDNLL-NMAYGVKRFSPMTIDGMTSLAGINIPGHPGTGWCIF 308
Query: 354 IYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 413
+Y++ + + L F FG V + KV D T K FGFV+ + A AIA +NG
Sbjct: 309 VYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 368
Score = 88 (36.0 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 25/94 (26%), Positives = 44/94 (46%)
Query: 74 NACHNKKTLPG-ASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + T+ SSP+ G E + L + LP+N+++ E+ +LF G I+
Sbjct: 42 NTANGPTTINNNCSSPVD----SGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESC 97
Query: 133 QILRGS-QQTSKGCAFLKYETKEQALAALEAING 165
+++R S G F+ Y + A A+ +NG
Sbjct: 98 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 131
Score = 63 (27.2 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 13/62 (20%), Positives = 33/62 (53%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 163
+F+ L + E+ + +F +G + +++++R + KG F+ ++A A+ ++
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 164 NG 165
NG
Sbjct: 367 NG 368
>UNIPROTKB|F1N4V6 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:DAAA02019487
IPI:IPI00710891 Ensembl:ENSBTAT00000019169 Uniprot:F1N4V6
Length = 368
Score = 200 (75.5 bits), Expect = 5.2e-20, Sum P(2) = 5.2e-20
Identities = 50/176 (28%), Positives = 95/176 (53%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L V +P++MT+ + ++F ++ +++DK T S G FV +ADKA+
Sbjct: 38 KTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAI 97
Query: 74 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + K + ++V YA + + L++ LPK +S+ E+ LFS YG I
Sbjct: 98 NTLNGLKL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITS 154
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+IL Q T S+G F++++ + +A A++ +NG+ + G++ P+ VK+A+ +
Sbjct: 155 RILV-DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL-GAAEPITVKFANNPSQ 208
Score = 129 (50.5 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 21/64 (32%), Positives = 41/64 (64%)
Query: 350 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 409
ANL++ +P+ +E+ F +GR++++++ VD+ TGVS+ GF+ ++ A+ AI
Sbjct: 125 ANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 184
Query: 410 MMNG 413
+NG
Sbjct: 185 GLNG 188
Score = 121 (47.7 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 25/84 (29%), Positives = 49/84 (58%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+V +PK M++ ++ +F ++ + I+ D+ T SRG F+ R EA++A+
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 77 HNKKTLPGASSPLQVKYADGELER 100
+ +K L GA+ P+ VK+A+ ++
Sbjct: 187 NGQKPL-GAAEPITVKFANNPSQK 209
Score = 116 (45.9 bits), Expect = 0.00054, P = 0.00054
Identities = 24/63 (38%), Positives = 34/63 (53%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
NL + ++PQ E + F + G + S K+ DK TG S +GFV+Y P A AI
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 411 MNG 413
+NG
Sbjct: 100 LNG 102
Score = 99 (39.9 bits), Expect = 5.2e-20, Sum P(2) = 5.2e-20
Identities = 26/70 (37%), Positives = 35/70 (50%)
Query: 346 GPPGAN--LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPAS 403
G GA +F+Y++ E + L F FG V + KV D T K FGFV+ +
Sbjct: 279 GAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDE 338
Query: 404 AQNAIAMMNG 413
A AIA +NG
Sbjct: 339 AAMAIASLNG 348
Score = 81 (33.6 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 19/72 (26%), Positives = 35/72 (48%)
Query: 95 DGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETK 153
+G + + L + LP+N+++ E +LF G I+ +++R S G F+ Y
Sbjct: 31 NGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDP 90
Query: 154 EQALAALEAING 165
A A+ +NG
Sbjct: 91 NDADKAINTLNG 102
Score = 65 (27.9 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
Identities = 14/62 (22%), Positives = 32/62 (51%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 163
+F+ L E+ + LF +G + +++++R + KG F+ ++A A+ ++
Sbjct: 287 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 346
Query: 164 NG 165
NG
Sbjct: 347 NG 348
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 197 (74.4 bits), Expect = 7.6e-20, Sum P(2) = 7.6e-20
Identities = 49/176 (27%), Positives = 97/176 (55%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L V +P++MT+ +L ++F ++ +++DK T S G FV ++A+KA+
Sbjct: 38 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 97
Query: 74 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + + + ++V YA + + L++ LPK +++ E+ LFS YG I
Sbjct: 98 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 154
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+IL Q T S+G F++++ + +A A++ +NG+ K G++ P+ VK+A+ +
Sbjct: 155 RILV-DQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ-KPPGATEPITVKFANNPSQ 208
Score = 129 (50.5 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 27/84 (32%), Positives = 49/84 (58%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+V +PK MT+ +L +F ++ + I+ D+ T SRG F+ R EA++A+
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 77 HNKKTLPGASSPLQVKYADGELER 100
+ +K PGA+ P+ VK+A+ ++
Sbjct: 187 NGQKP-PGATEPITVKFANNPSQK 209
Score = 128 (50.1 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 21/64 (32%), Positives = 41/64 (64%)
Query: 350 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 409
ANL++ +P+ +EL F +GR++++++ VD+ TG+S+ GF+ ++ A+ AI
Sbjct: 125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184
Query: 410 MMNG 413
+NG
Sbjct: 185 GLNG 188
Score = 124 (48.7 bits), Expect = 6.2e-05, P = 6.2e-05
Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
NL + ++PQ +EL + F + G + S K+ DK TG S +GFV+Y P A+ AI
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 411 MNG 413
+NG
Sbjct: 100 LNG 102
Score = 99 (39.9 bits), Expect = 7.6e-20, Sum P(2) = 7.6e-20
Identities = 26/72 (36%), Positives = 36/72 (50%)
Query: 344 IEGPPGAN--LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESP 401
I G PG +F+Y++ + + L F FG V + KV D T K FGFV+ +
Sbjct: 255 IPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNY 314
Query: 402 ASAQNAIAMMNG 413
A AIA +NG
Sbjct: 315 DEAAMAIASLNG 326
Score = 87 (35.7 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 23/81 (28%), Positives = 40/81 (49%)
Query: 86 SSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKG 144
SSP+ G E + L + LP+N+++ E+ +LF G I+ +++R S G
Sbjct: 26 SSPVD----SGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLG 81
Query: 145 CAFLKYETKEQALAALEAING 165
F+ Y + A A+ +NG
Sbjct: 82 YGFVNYIDPKDAEKAINTLNG 102
Score = 63 (27.2 bits), Expect = 6.6e-08, Sum P(2) = 6.6e-08
Identities = 13/62 (20%), Positives = 33/62 (53%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 163
+F+ L + E+ + +F +G + +++++R + KG F+ ++A A+ ++
Sbjct: 265 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 324
Query: 164 NG 165
NG
Sbjct: 325 NG 326
>UNIPROTKB|F1SA16 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:CU855518
Ensembl:ENSSSCT00000014872 Uniprot:F1SA16
Length = 367
Score = 200 (75.5 bits), Expect = 1.0e-19, Sum P(2) = 1.0e-19
Identities = 50/176 (28%), Positives = 95/176 (53%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L V +P++MT+ + ++F ++ +++DK T S G FV +ADKA+
Sbjct: 38 KTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAI 97
Query: 74 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + K + ++V YA + + L++ LPK +S+ E+ LFS YG I
Sbjct: 98 NTLNGLKL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITS 154
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+IL Q T S+G F++++ + +A A++ +NG+ + G++ P+ VK+A+ +
Sbjct: 155 RILV-DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPL-GAAEPITVKFANNPSQ 208
Score = 129 (50.5 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 21/64 (32%), Positives = 41/64 (64%)
Query: 350 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 409
ANL++ +P+ +E+ F +GR++++++ VD+ TGVS+ GF+ ++ A+ AI
Sbjct: 125 ANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 184
Query: 410 MMNG 413
+NG
Sbjct: 185 GLNG 188
Score = 121 (47.7 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 25/84 (29%), Positives = 49/84 (58%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+V +PK M++ ++ +F ++ + I+ D+ T SRG F+ R EA++A+
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 77 HNKKTLPGASSPLQVKYADGELER 100
+ +K L GA+ P+ VK+A+ ++
Sbjct: 187 NGQKPL-GAAEPITVKFANNPSQK 209
Score = 116 (45.9 bits), Expect = 0.00054, P = 0.00054
Identities = 24/63 (38%), Positives = 34/63 (53%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
NL + ++PQ E + F + G + S K+ DK TG S +GFV+Y P A AI
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 411 MNG 413
+NG
Sbjct: 100 LNG 102
Score = 96 (38.9 bits), Expect = 1.0e-19, Sum P(2) = 1.0e-19
Identities = 23/62 (37%), Positives = 32/62 (51%)
Query: 352 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 411
+F+Y++ E + L F FG V + KV D T K FGFV+ + A AIA +
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 412 NG 413
NG
Sbjct: 346 NG 347
Score = 81 (33.6 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 19/72 (26%), Positives = 35/72 (48%)
Query: 95 DGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETK 153
+G + + L + LP+N+++ E +LF G I+ +++R S G F+ Y
Sbjct: 31 NGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDP 90
Query: 154 EQALAALEAING 165
A A+ +NG
Sbjct: 91 NDADKAINTLNG 102
Score = 65 (27.9 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
Identities = 14/62 (22%), Positives = 32/62 (51%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 163
+F+ L E+ + LF +G + +++++R + KG F+ ++A A+ ++
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 164 NG 165
NG
Sbjct: 346 NG 347
>RGD|628611 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 190 (71.9 bits), Expect = 1.9e-19, Sum P(2) = 1.9e-19
Identities = 48/176 (27%), Positives = 96/176 (54%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L +P++MT+ +L ++F ++ +++DK T S G FV ++A+KA+
Sbjct: 38 KTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 97
Query: 74 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + + + ++V YA + + L++ LPK +++ E+ LFS YG I
Sbjct: 98 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 154
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+IL Q T S+G F++++ + +A A++ +NG+ K G++ P+ VK+A+ +
Sbjct: 155 RILV-DQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ-KPPGATEPITVKFANNPSQ 208
Score = 129 (50.5 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
Identities = 27/84 (32%), Positives = 49/84 (58%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+V +PK MT+ +L +F ++ + I+ D+ T SRG F+ R EA++A+
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 77 HNKKTLPGASSPLQVKYADGELER 100
+ +K PGA+ P+ VK+A+ ++
Sbjct: 187 NGQKP-PGATEPITVKFANNPSQK 209
Score = 128 (50.1 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 21/64 (32%), Positives = 41/64 (64%)
Query: 350 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 409
ANL++ +P+ +EL F +GR++++++ VD+ TG+S+ GF+ ++ A+ AI
Sbjct: 125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184
Query: 410 MMNG 413
+NG
Sbjct: 185 GLNG 188
Score = 118 (46.6 bits), Expect = 0.00031, P = 0.00031
Identities = 25/63 (39%), Positives = 36/63 (57%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
NL ++PQ +EL + F + G + S K+ DK TG S +GFV+Y P A+ AI
Sbjct: 40 NLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 411 MNG 413
+NG
Sbjct: 100 LNG 102
Score = 105 (42.0 bits), Expect = 1.9e-19, Sum P(2) = 1.9e-19
Identities = 35/120 (29%), Positives = 51/120 (42%)
Query: 296 PGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGAN--LF 353
P +YP P R L+N +++ V +P I G PG +F
Sbjct: 222 PNRRYPGPLAQQAQRFR-LDNLL-NMAYGVKRFSPMTIDGMTSLAGINIPGHPGTGWCIF 279
Query: 354 IYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 413
+Y++ + + L F FG V + KV D T K FGFV+ + A AIA +NG
Sbjct: 280 VYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 339
Score = 81 (33.6 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 23/81 (28%), Positives = 39/81 (48%)
Query: 86 SSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKG 144
SSP+ G E + L LP+N+++ E+ +LF G I+ +++R S G
Sbjct: 26 SSPVD----SGNTEDSKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLG 81
Query: 145 CAFLKYETKEQALAALEAING 165
F+ Y + A A+ +NG
Sbjct: 82 YGFVNYIDPKDAEKAINTLNG 102
Score = 63 (27.2 bits), Expect = 7.6e-08, Sum P(2) = 7.6e-08
Identities = 13/62 (20%), Positives = 33/62 (53%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 163
+F+ L + E+ + +F +G + +++++R + KG F+ ++A A+ ++
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 164 NG 165
NG
Sbjct: 338 NG 339
>UNIPROTKB|Q8CH84 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 190 (71.9 bits), Expect = 1.9e-19, Sum P(2) = 1.9e-19
Identities = 48/176 (27%), Positives = 96/176 (54%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L +P++MT+ +L ++F ++ +++DK T S G FV ++A+KA+
Sbjct: 38 KTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 97
Query: 74 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + + + ++V YA + + L++ LPK +++ E+ LFS YG I
Sbjct: 98 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 154
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+IL Q T S+G F++++ + +A A++ +NG+ K G++ P+ VK+A+ +
Sbjct: 155 RILV-DQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ-KPPGATEPITVKFANNPSQ 208
Score = 129 (50.5 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
Identities = 27/84 (32%), Positives = 49/84 (58%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+V +PK MT+ +L +F ++ + I+ D+ T SRG F+ R EA++A+
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 77 HNKKTLPGASSPLQVKYADGELER 100
+ +K PGA+ P+ VK+A+ ++
Sbjct: 187 NGQKP-PGATEPITVKFANNPSQK 209
Score = 128 (50.1 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 21/64 (32%), Positives = 41/64 (64%)
Query: 350 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 409
ANL++ +P+ +EL F +GR++++++ VD+ TG+S+ GF+ ++ A+ AI
Sbjct: 125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184
Query: 410 MMNG 413
+NG
Sbjct: 185 GLNG 188
Score = 118 (46.6 bits), Expect = 0.00031, P = 0.00031
Identities = 25/63 (39%), Positives = 36/63 (57%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
NL ++PQ +EL + F + G + S K+ DK TG S +GFV+Y P A+ AI
Sbjct: 40 NLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 411 MNG 413
+NG
Sbjct: 100 LNG 102
Score = 105 (42.0 bits), Expect = 1.9e-19, Sum P(2) = 1.9e-19
Identities = 35/120 (29%), Positives = 51/120 (42%)
Query: 296 PGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGAN--LF 353
P +YP P R L+N +++ V +P I G PG +F
Sbjct: 222 PNRRYPGPLAQQAQRFR-LDNLL-NMAYGVKRFSPMTIDGMTSLAGINIPGHPGTGWCIF 279
Query: 354 IYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 413
+Y++ + + L F FG V + KV D T K FGFV+ + A AIA +NG
Sbjct: 280 VYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 339
Score = 81 (33.6 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 23/81 (28%), Positives = 39/81 (48%)
Query: 86 SSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKG 144
SSP+ G E + L LP+N+++ E+ +LF G I+ +++R S G
Sbjct: 26 SSPVD----SGNTEDSKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLG 81
Query: 145 CAFLKYETKEQALAALEAING 165
F+ Y + A A+ +NG
Sbjct: 82 YGFVNYIDPKDAEKAINTLNG 102
Score = 63 (27.2 bits), Expect = 7.6e-08, Sum P(2) = 7.6e-08
Identities = 13/62 (20%), Positives = 33/62 (53%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 163
+F+ L + E+ + +F +G + +++++R + KG F+ ++A A+ ++
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 164 NG 165
NG
Sbjct: 338 NG 339
>UNIPROTKB|A2VDK5 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
Length = 366
Score = 194 (73.4 bits), Expect = 9.7e-19, Sum P(2) = 9.7e-19
Identities = 48/176 (27%), Positives = 96/176 (54%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L V +P++MT+ + ++F ++ +++DK T S G FV ++A+KA+
Sbjct: 45 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 104
Query: 74 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + + + ++V YA + + L++ LPK +++ E+ LFS YG I
Sbjct: 105 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 161
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+IL Q T S+G F++++ + +A A++ +NG+ K G++ P+ VK+A+ +
Sbjct: 162 RILV-DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ-KPSGATEPITVKFANNPSQ 215
Score = 129 (50.5 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 22/64 (34%), Positives = 41/64 (64%)
Query: 350 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 409
ANL++ +P+ +EL F +GR++++++ VD+ TGVS+ GF+ ++ A+ AI
Sbjct: 132 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 191
Query: 410 MMNG 413
+NG
Sbjct: 192 GLNG 195
Score = 123 (48.4 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 27/89 (30%), Positives = 49/89 (55%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+V +PK MT+ +L +F ++ + I+ D+ T SRG F+ R EA++A+
Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193
Query: 77 HNKKTLPGASSPLQVKYADGELERLEHKL 105
+ +K GA+ P+ VK+A+ ++ L
Sbjct: 194 NGQKP-SGATEPITVKFANNPSQKSSQAL 221
Score = 120 (47.3 bits), Expect = 0.00019, P = 0.00019
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
NL + ++PQ +E + F + G + S K+ DK TG S +GFV+Y P A+ AI
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 411 MNG 413
+NG
Sbjct: 107 LNG 109
Score = 94 (38.1 bits), Expect = 9.7e-19, Sum P(2) = 9.7e-19
Identities = 34/120 (28%), Positives = 50/120 (41%)
Query: 296 PGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGAN--LF 353
P +YP P R L+N +++ V +P I G G +F
Sbjct: 229 PNRRYPGPLHHQAQRFR-LDNLL-NMAYGVKRFSPITIDGMTSLVGMNIPGHTGTGWCIF 286
Query: 354 IYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 413
+Y++ + + L F FG V + KV D T K FGFV+ + A AIA +NG
Sbjct: 287 VYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 346
Score = 65 (27.9 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 14/62 (22%), Positives = 33/62 (53%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 163
+F+ L + E+ + LF +G + +++++R + KG F+ ++A A+ ++
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 164 NG 165
NG
Sbjct: 345 NG 346
>UNIPROTKB|J9PAL3 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
Uniprot:J9PAL3
Length = 366
Score = 194 (73.4 bits), Expect = 9.7e-19, Sum P(2) = 9.7e-19
Identities = 48/176 (27%), Positives = 96/176 (54%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L V +P++MT+ + ++F ++ +++DK T S G FV ++A+KA+
Sbjct: 45 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 104
Query: 74 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + + + ++V YA + + L++ LPK +++ E+ LFS YG I
Sbjct: 105 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 161
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+IL Q T S+G F++++ + +A A++ +NG+ K G++ P+ VK+A+ +
Sbjct: 162 RILV-DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ-KPSGATEPITVKFANNPSQ 215
Score = 129 (50.5 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 22/64 (34%), Positives = 41/64 (64%)
Query: 350 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 409
ANL++ +P+ +EL F +GR++++++ VD+ TGVS+ GF+ ++ A+ AI
Sbjct: 132 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 191
Query: 410 MMNG 413
+NG
Sbjct: 192 GLNG 195
Score = 123 (48.4 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 27/89 (30%), Positives = 49/89 (55%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+V +PK MT+ +L +F ++ + I+ D+ T SRG F+ R EA++A+
Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193
Query: 77 HNKKTLPGASSPLQVKYADGELERLEHKL 105
+ +K GA+ P+ VK+A+ ++ L
Sbjct: 194 NGQKP-SGATEPITVKFANNPSQKSSQAL 221
Score = 120 (47.3 bits), Expect = 0.00019, P = 0.00019
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
NL + ++PQ +E + F + G + S K+ DK TG S +GFV+Y P A+ AI
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 411 MNG 413
+NG
Sbjct: 107 LNG 109
Score = 94 (38.1 bits), Expect = 9.7e-19, Sum P(2) = 9.7e-19
Identities = 34/120 (28%), Positives = 50/120 (41%)
Query: 296 PGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGAN--LF 353
P +YP P R L+N +++ V +P I G G +F
Sbjct: 229 PNRRYPGPLHHQAQRFR-LDNLL-NMAYGVKRFSPITIDGMTSLVGMNIPGHTGTGWCIF 286
Query: 354 IYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 413
+Y++ + + L F FG V + KV D T K FGFV+ + A AIA +NG
Sbjct: 287 VYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 346
Score = 65 (27.9 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 14/62 (22%), Positives = 33/62 (53%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 163
+F+ L + E+ + LF +G + +++++R + KG F+ ++A A+ ++
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 164 NG 165
NG
Sbjct: 345 NG 346
>UNIPROTKB|F1NLH0 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
Length = 371
Score = 194 (73.4 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 48/176 (27%), Positives = 96/176 (54%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L V +P++MT+ + ++F ++ +++DK T S G FV ++A+KA+
Sbjct: 50 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 109
Query: 74 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + + + ++V YA + + L++ LPK +++ E+ LFS YG I
Sbjct: 110 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 166
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+IL Q T S+G F++++ + +A A++ +NG+ K G++ P+ VK+A+ +
Sbjct: 167 RILV-DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ-KPSGATEPITVKFANNPSQ 220
Score = 129 (50.5 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 22/64 (34%), Positives = 41/64 (64%)
Query: 350 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 409
ANL++ +P+ +EL F +GR++++++ VD+ TGVS+ GF+ ++ A+ AI
Sbjct: 137 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 196
Query: 410 MMNG 413
+NG
Sbjct: 197 GLNG 200
Score = 124 (48.7 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 27/89 (30%), Positives = 49/89 (55%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+V +PK MT+ +L +F ++ + I+ D+ T SRG F+ R EA++A+
Sbjct: 139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 198
Query: 77 HNKKTLPGASSPLQVKYADGELERLEHKL 105
+ +K GA+ P+ VK+A+ ++ L
Sbjct: 199 NGQKP-SGATEPITVKFANNPSQKTSQAL 226
Score = 120 (47.3 bits), Expect = 0.00020, P = 0.00020
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
NL + ++PQ +E + F + G + S K+ DK TG S +GFV+Y P A+ AI
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 411 MNG 413
+NG
Sbjct: 112 LNG 114
Score = 94 (38.1 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 34/120 (28%), Positives = 50/120 (41%)
Query: 296 PGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGAN--LF 353
P +YP P R L+N +++ V +P I G G +F
Sbjct: 234 PNRRYPGPLHHQAQRFR-LDNLL-NMAYGVKRFSPITIDGMTSLVGMNIPGHTGTGWCIF 291
Query: 354 IYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 413
+Y++ + + L F FG V + KV D T K FGFV+ + A AIA +NG
Sbjct: 292 VYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 351
Score = 65 (27.9 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 14/62 (22%), Positives = 33/62 (53%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 163
+F+ L + E+ + LF +G + +++++R + KG F+ ++A A+ ++
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 164 NG 165
NG
Sbjct: 350 NG 351
>UNIPROTKB|B1APY9 [details] [associations]
symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
Uniprot:B1APY9
Length = 371
Score = 194 (73.4 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 48/176 (27%), Positives = 96/176 (54%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L V +P++MT+ + ++F ++ +++DK T S G FV ++A+KA+
Sbjct: 50 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 109
Query: 74 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + + + ++V YA + + L++ LPK +++ E+ LFS YG I
Sbjct: 110 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 166
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+IL Q T S+G F++++ + +A A++ +NG+ K G++ P+ VK+A+ +
Sbjct: 167 RILV-DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ-KPSGATEPITVKFANNPSQ 220
Score = 129 (50.5 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 22/64 (34%), Positives = 41/64 (64%)
Query: 350 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 409
ANL++ +P+ +EL F +GR++++++ VD+ TGVS+ GF+ ++ A+ AI
Sbjct: 137 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 196
Query: 410 MMNG 413
+NG
Sbjct: 197 GLNG 200
Score = 123 (48.4 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
Identities = 27/89 (30%), Positives = 49/89 (55%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+V +PK MT+ +L +F ++ + I+ D+ T SRG F+ R EA++A+
Sbjct: 139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 198
Query: 77 HNKKTLPGASSPLQVKYADGELERLEHKL 105
+ +K GA+ P+ VK+A+ ++ L
Sbjct: 199 NGQKP-SGATEPITVKFANNPSQKSSQAL 226
Score = 120 (47.3 bits), Expect = 0.00020, P = 0.00020
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
NL + ++PQ +E + F + G + S K+ DK TG S +GFV+Y P A+ AI
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 411 MNG 413
+NG
Sbjct: 112 LNG 114
Score = 94 (38.1 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 34/120 (28%), Positives = 50/120 (41%)
Query: 296 PGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGAN--LF 353
P +YP P R L+N +++ V +P I G G +F
Sbjct: 234 PNRRYPGPLHHQAQRFR-LDNLL-NMAYGVKRFSPITIDGMTSLVGMNIPGHTGTGWCIF 291
Query: 354 IYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 413
+Y++ + + L F FG V + KV D T K FGFV+ + A AIA +NG
Sbjct: 292 VYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 351
Score = 65 (27.9 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 14/62 (22%), Positives = 33/62 (53%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 163
+F+ L + E+ + LF +G + +++++R + KG F+ ++A A+ ++
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 164 NG 165
NG
Sbjct: 350 NG 351
>RGD|1560027 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 194 (73.4 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 48/176 (27%), Positives = 96/176 (54%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L V +P++MT+ + ++F ++ +++DK T S G FV ++A+KA+
Sbjct: 38 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 97
Query: 74 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + + + ++V YA + + L++ LPK +++ E+ LFS YG I
Sbjct: 98 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 154
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+IL Q T S+G F++++ + +A A++ +NG+ K G++ P+ VK+A+ +
Sbjct: 155 RILV-DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ-KPSGATEPITVKFANNPSQ 208
Score = 129 (50.5 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 22/64 (34%), Positives = 41/64 (64%)
Query: 350 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 409
ANL++ +P+ +EL F +GR++++++ VD+ TGVS+ GF+ ++ A+ AI
Sbjct: 125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 184
Query: 410 MMNG 413
+NG
Sbjct: 185 GLNG 188
Score = 123 (48.4 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
Identities = 27/89 (30%), Positives = 49/89 (55%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+V +PK MT+ +L +F ++ + I+ D+ T SRG F+ R EA++A+
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 77 HNKKTLPGASSPLQVKYADGELERLEHKL 105
+ +K GA+ P+ VK+A+ ++ L
Sbjct: 187 NGQKP-SGATEPITVKFANNPSQKSSQAL 214
Score = 120 (47.3 bits), Expect = 0.00020, P = 0.00020
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
NL + ++PQ +E + F + G + S K+ DK TG S +GFV+Y P A+ AI
Sbjct: 40 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 411 MNG 413
+NG
Sbjct: 100 LNG 102
Score = 94 (38.1 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 30/106 (28%), Positives = 43/106 (40%)
Query: 310 GHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGAN--LFIYHIPQEFGDQELG 367
G + L + P S +P I G G +F+Y++ + + L
Sbjct: 248 GVKRLMSGPVPPSACPPRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLW 307
Query: 368 NAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 413
F FG V + KV D T K FGFV+ + A AIA +NG
Sbjct: 308 QLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 353
Score = 65 (27.9 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 14/62 (22%), Positives = 33/62 (53%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 163
+F+ L + E+ + LF +G + +++++R + KG F+ ++A A+ ++
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 164 NG 165
NG
Sbjct: 352 NG 353
>UNIPROTKB|O09032 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
ArrayExpress:O09032 Genevestigator:O09032
GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 194 (73.4 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 48/176 (27%), Positives = 96/176 (54%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L V +P++MT+ + ++F ++ +++DK T S G FV ++A+KA+
Sbjct: 38 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 97
Query: 74 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + + + ++V YA + + L++ LPK +++ E+ LFS YG I
Sbjct: 98 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 154
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+IL Q T S+G F++++ + +A A++ +NG+ K G++ P+ VK+A+ +
Sbjct: 155 RILV-DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ-KPSGATEPITVKFANNPSQ 208
Score = 129 (50.5 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 22/64 (34%), Positives = 41/64 (64%)
Query: 350 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 409
ANL++ +P+ +EL F +GR++++++ VD+ TGVS+ GF+ ++ A+ AI
Sbjct: 125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 184
Query: 410 MMNG 413
+NG
Sbjct: 185 GLNG 188
Score = 123 (48.4 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
Identities = 27/89 (30%), Positives = 49/89 (55%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+V +PK MT+ +L +F ++ + I+ D+ T SRG F+ R EA++A+
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 77 HNKKTLPGASSPLQVKYADGELERLEHKL 105
+ +K GA+ P+ VK+A+ ++ L
Sbjct: 187 NGQKP-SGATEPITVKFANNPSQKSSQAL 214
Score = 120 (47.3 bits), Expect = 0.00020, P = 0.00020
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
NL + ++PQ +E + F + G + S K+ DK TG S +GFV+Y P A+ AI
Sbjct: 40 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 411 MNG 413
+NG
Sbjct: 100 LNG 102
Score = 94 (38.1 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 30/106 (28%), Positives = 43/106 (40%)
Query: 310 GHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGAN--LFIYHIPQEFGDQELG 367
G + L + P S +P I G G +F+Y++ + + L
Sbjct: 248 GVKRLMSGPVPPSACPPRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLW 307
Query: 368 NAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 413
F FG V + KV D T K FGFV+ + A AIA +NG
Sbjct: 308 QLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 353
Score = 65 (27.9 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 14/62 (22%), Positives = 33/62 (53%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 163
+F+ L + E+ + LF +G + +++++R + KG F+ ++A A+ ++
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 164 NG 165
NG
Sbjct: 352 NG 353
>UNIPROTKB|P26378 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
Ensembl:ENST00000371823 Ensembl:ENST00000371824
Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
Length = 380
Score = 194 (73.4 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 48/176 (27%), Positives = 96/176 (54%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L V +P++MT+ + ++F ++ +++DK T S G FV ++A+KA+
Sbjct: 45 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 104
Query: 74 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + + + ++V YA + + L++ LPK +++ E+ LFS YG I
Sbjct: 105 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 161
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+IL Q T S+G F++++ + +A A++ +NG+ K G++ P+ VK+A+ +
Sbjct: 162 RILV-DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ-KPSGATEPITVKFANNPSQ 215
Score = 129 (50.5 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 22/64 (34%), Positives = 41/64 (64%)
Query: 350 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 409
ANL++ +P+ +EL F +GR++++++ VD+ TGVS+ GF+ ++ A+ AI
Sbjct: 132 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 191
Query: 410 MMNG 413
+NG
Sbjct: 192 GLNG 195
Score = 123 (48.4 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 27/89 (30%), Positives = 49/89 (55%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+V +PK MT+ +L +F ++ + I+ D+ T SRG F+ R EA++A+
Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193
Query: 77 HNKKTLPGASSPLQVKYADGELERLEHKL 105
+ +K GA+ P+ VK+A+ ++ L
Sbjct: 194 NGQKP-SGATEPITVKFANNPSQKSSQAL 221
Score = 120 (47.3 bits), Expect = 0.00021, P = 0.00021
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
NL + ++PQ +E + F + G + S K+ DK TG S +GFV+Y P A+ AI
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 411 MNG 413
+NG
Sbjct: 107 LNG 109
Score = 94 (38.1 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 30/106 (28%), Positives = 43/106 (40%)
Query: 310 GHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGAN--LFIYHIPQEFGDQELG 367
G + L + P S +P I G G +F+Y++ + + L
Sbjct: 255 GVKRLMSGPVPPSACPPRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLW 314
Query: 368 NAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 413
F FG V + KV D T K FGFV+ + A AIA +NG
Sbjct: 315 QLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 360
Score = 65 (27.9 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 14/62 (22%), Positives = 33/62 (53%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 163
+F+ L + E+ + LF +G + +++++R + KG F+ ++A A+ ++
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 164 NG 165
NG
Sbjct: 359 NG 360
>UNIPROTKB|F1LRX3 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
Length = 380
Score = 194 (73.4 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 48/176 (27%), Positives = 96/176 (54%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L V +P++MT+ + ++F ++ +++DK T S G FV ++A+KA+
Sbjct: 45 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 104
Query: 74 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + + + ++V YA + + L++ LPK +++ E+ LFS YG I
Sbjct: 105 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 161
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+IL Q T S+G F++++ + +A A++ +NG+ K G++ P+ VK+A+ +
Sbjct: 162 RILV-DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ-KPSGATEPITVKFANNPSQ 215
Score = 129 (50.5 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 22/64 (34%), Positives = 41/64 (64%)
Query: 350 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 409
ANL++ +P+ +EL F +GR++++++ VD+ TGVS+ GF+ ++ A+ AI
Sbjct: 132 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 191
Query: 410 MMNG 413
+NG
Sbjct: 192 GLNG 195
Score = 123 (48.4 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 27/89 (30%), Positives = 49/89 (55%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+V +PK MT+ +L +F ++ + I+ D+ T SRG F+ R EA++A+
Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193
Query: 77 HNKKTLPGASSPLQVKYADGELERLEHKL 105
+ +K GA+ P+ VK+A+ ++ L
Sbjct: 194 NGQKP-SGATEPITVKFANNPSQKSSQAL 221
Score = 120 (47.3 bits), Expect = 0.00021, P = 0.00021
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
NL + ++PQ +E + F + G + S K+ DK TG S +GFV+Y P A+ AI
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 411 MNG 413
+NG
Sbjct: 107 LNG 109
Score = 94 (38.1 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 30/106 (28%), Positives = 43/106 (40%)
Query: 310 GHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGAN--LFIYHIPQEFGDQELG 367
G + L + P S +P I G G +F+Y++ + + L
Sbjct: 255 GVKRLMSGPVPPSACPPRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLW 314
Query: 368 NAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 413
F FG V + KV D T K FGFV+ + A AIA +NG
Sbjct: 315 QLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 360
Score = 65 (27.9 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 14/62 (22%), Positives = 33/62 (53%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 163
+F+ L + E+ + LF +G + +++++R + KG F+ ++A A+ ++
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 164 NG 165
NG
Sbjct: 359 NG 360
>UNIPROTKB|B4DFI3 [details] [associations]
symbol:CELF5 "CUGBP Elav-like family member 5" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107646
HOGENOM:HOG000004754 EMBL:AC005331 EMBL:AC006505 EMBL:AC010649
EMBL:AC123911 UniGene:Hs.655747 HGNC:HGNC:14058 EMBL:AK294109
IPI:IPI00645373 SMR:B4DFI3 STRING:B4DFI3 Ensembl:ENST00000334293
Uniprot:B4DFI3
Length = 320
Score = 233 (87.1 bits), Expect = 1.3e-18, P = 1.3e-18
Identities = 81/232 (34%), Positives = 107/232 (46%)
Query: 88 PLQVKYADGELER-LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCA 146
P+QVK AD E + KLF+GML K SE +V LF +G I + +LRG +SKGCA
Sbjct: 4 PIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCA 63
Query: 147 FLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKEXXXXXXXXXXXXXNNLPNAD 206
F+K+ + +A AA+ A++G M G+S LVVK+ADT+KE L
Sbjct: 64 FVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQLGILT--- 120
Query: 207 SQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRG 266
PSL LP PY+ Y QA LMQ + + + + P V
Sbjct: 121 ---PSL--TLPFS---PYSAYA-QA-----LMQQQTTVLSTSGSY--LSPGVAFSPCHIQ 164
Query: 267 ASPDLSSNMGPRNYAMPPSGFVGS---GYPAVPGLQYPM--------PYPGG 307
+S N P P SG G AVPGL P+ P+PGG
Sbjct: 165 QIGAVSLNGLPATPIAPASGLHSPPLLGTTAVPGLVAPITNGFAGVVPFPGG 216
Score = 182 (69.1 bits), Expect = 2.8e-12, Sum P(2) = 2.8e-12
Identities = 45/128 (35%), Positives = 69/128 (53%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFVG + K +E +L +F+ F ++DE +++ +S+GC FV S EA A++A
Sbjct: 21 KLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDG-SSKGCAFVKFSSHTEAQAAIHA 79
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKL--FIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
H +T+PGASS L VK+AD + ER ++ +G L + ++ FS Y Q
Sbjct: 80 LHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQL--GILTPSLTLPFSPYSAYA--Q 135
Query: 134 ILRGSQQT 141
L Q T
Sbjct: 136 ALMQQQTT 143
Score = 42 (19.8 bits), Expect = 2.8e-12, Sum P(2) = 2.8e-12
Identities = 18/70 (25%), Positives = 26/70 (37%)
Query: 243 PPMQNQPGFHGIIPPVNQGNA----MRGASPDLSSNM--GPRNYAMPPSGFVGSGYPAVP 296
PP+ G++ P+ G A G P L + G Y + +PA
Sbjct: 188 PPLLGTTAVPGLVAPITNGFAGVVPFPGGHPALETVYANGLVPYPAQSPTVAETLHPAFS 247
Query: 297 GLQ-YPMPYP 305
G+Q Y YP
Sbjct: 248 GVQQYTAMYP 257
>UNIPROTKB|F1P856 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
Ensembl:ENSCAFT00000006315 Uniprot:F1P856
Length = 382
Score = 194 (73.4 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 48/176 (27%), Positives = 96/176 (54%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L V +P++MT+ + ++F ++ +++DK T S G FV ++A+KA+
Sbjct: 61 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 120
Query: 74 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + + + ++V YA + + L++ LPK +++ E+ LFS YG I
Sbjct: 121 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 177
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+IL Q T S+G F++++ + +A A++ +NG+ K G++ P+ VK+A+ +
Sbjct: 178 RILV-DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ-KPSGATEPITVKFANNPSQ 231
Score = 129 (50.5 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 22/64 (34%), Positives = 41/64 (64%)
Query: 350 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 409
ANL++ +P+ +EL F +GR++++++ VD+ TGVS+ GF+ ++ A+ AI
Sbjct: 148 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 207
Query: 410 MMNG 413
+NG
Sbjct: 208 GLNG 211
Score = 123 (48.4 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 27/89 (30%), Positives = 49/89 (55%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+V +PK MT+ +L +F ++ + I+ D+ T SRG F+ R EA++A+
Sbjct: 150 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 209
Query: 77 HNKKTLPGASSPLQVKYADGELERLEHKL 105
+ +K GA+ P+ VK+A+ ++ L
Sbjct: 210 NGQKP-SGATEPITVKFANNPSQKSSQAL 237
Score = 120 (47.3 bits), Expect = 0.00021, P = 0.00021
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
NL + ++PQ +E + F + G + S K+ DK TG S +GFV+Y P A+ AI
Sbjct: 63 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 122
Query: 411 MNG 413
+NG
Sbjct: 123 LNG 125
Score = 94 (38.1 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 34/120 (28%), Positives = 50/120 (41%)
Query: 296 PGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGAN--LF 353
P +YP P R L+N +++ V +P I G G +F
Sbjct: 245 PNRRYPGPLHHQAQRFR-LDNLL-NMAYGVKRFSPITIDGMTSLVGMNIPGHTGTGWCIF 302
Query: 354 IYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 413
+Y++ + + L F FG V + KV D T K FGFV+ + A AIA +NG
Sbjct: 303 VYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 362
Score = 65 (27.9 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 14/62 (22%), Positives = 33/62 (53%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 163
+F+ L + E+ + LF +G + +++++R + KG F+ ++A A+ ++
Sbjct: 301 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 360
Query: 164 NG 165
NG
Sbjct: 361 NG 362
>UNIPROTKB|F1LRL1 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
Length = 384
Score = 194 (73.4 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 48/176 (27%), Positives = 96/176 (54%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L V +P++MT+ + ++F ++ +++DK T S G FV ++A+KA+
Sbjct: 49 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 108
Query: 74 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + + + ++V YA + + L++ LPK +++ E+ LFS YG I
Sbjct: 109 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 165
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+IL Q T S+G F++++ + +A A++ +NG+ K G++ P+ VK+A+ +
Sbjct: 166 RILV-DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ-KPSGATEPITVKFANNPSQ 219
Score = 129 (50.5 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 22/64 (34%), Positives = 41/64 (64%)
Query: 350 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 409
ANL++ +P+ +EL F +GR++++++ VD+ TGVS+ GF+ ++ A+ AI
Sbjct: 136 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 195
Query: 410 MMNG 413
+NG
Sbjct: 196 GLNG 199
Score = 123 (48.4 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 27/89 (30%), Positives = 49/89 (55%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+V +PK MT+ +L +F ++ + I+ D+ T SRG F+ R EA++A+
Sbjct: 138 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 197
Query: 77 HNKKTLPGASSPLQVKYADGELERLEHKL 105
+ +K GA+ P+ VK+A+ ++ L
Sbjct: 198 NGQKP-SGATEPITVKFANNPSQKSSQAL 225
Score = 120 (47.3 bits), Expect = 0.00021, P = 0.00021
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
NL + ++PQ +E + F + G + S K+ DK TG S +GFV+Y P A+ AI
Sbjct: 51 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 110
Query: 411 MNG 413
+NG
Sbjct: 111 LNG 113
Score = 94 (38.1 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 30/106 (28%), Positives = 43/106 (40%)
Query: 310 GHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGAN--LFIYHIPQEFGDQELG 367
G + L + P S +P I G G +F+Y++ + + L
Sbjct: 259 GVKRLMSGPVPPSACPPRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLW 318
Query: 368 NAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 413
F FG V + KV D T K FGFV+ + A AIA +NG
Sbjct: 319 QLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 364
Score = 65 (27.9 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 14/62 (22%), Positives = 33/62 (53%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 163
+F+ L + E+ + LF +G + +++++R + KG F+ ++A A+ ++
Sbjct: 303 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 362
Query: 164 NG 165
NG
Sbjct: 363 NG 364
>UNIPROTKB|B1APY8 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
Uniprot:B1APY8
Length = 385
Score = 194 (73.4 bits), Expect = 1.4e-18, Sum P(2) = 1.4e-18
Identities = 48/176 (27%), Positives = 96/176 (54%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L V +P++MT+ + ++F ++ +++DK T S G FV ++A+KA+
Sbjct: 50 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 109
Query: 74 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + + + ++V YA + + L++ LPK +++ E+ LFS YG I
Sbjct: 110 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 166
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+IL Q T S+G F++++ + +A A++ +NG+ K G++ P+ VK+A+ +
Sbjct: 167 RILV-DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ-KPSGATEPITVKFANNPSQ 220
Score = 129 (50.5 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 22/64 (34%), Positives = 41/64 (64%)
Query: 350 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 409
ANL++ +P+ +EL F +GR++++++ VD+ TGVS+ GF+ ++ A+ AI
Sbjct: 137 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 196
Query: 410 MMNG 413
+NG
Sbjct: 197 GLNG 200
Score = 123 (48.4 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 27/89 (30%), Positives = 49/89 (55%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+V +PK MT+ +L +F ++ + I+ D+ T SRG F+ R EA++A+
Sbjct: 139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 198
Query: 77 HNKKTLPGASSPLQVKYADGELERLEHKL 105
+ +K GA+ P+ VK+A+ ++ L
Sbjct: 199 NGQKP-SGATEPITVKFANNPSQKSSQAL 226
Score = 120 (47.3 bits), Expect = 0.00021, P = 0.00021
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
NL + ++PQ +E + F + G + S K+ DK TG S +GFV+Y P A+ AI
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 411 MNG 413
+NG
Sbjct: 112 LNG 114
Score = 94 (38.1 bits), Expect = 1.4e-18, Sum P(2) = 1.4e-18
Identities = 30/106 (28%), Positives = 43/106 (40%)
Query: 310 GHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGAN--LFIYHIPQEFGDQELG 367
G + L + P S +P I G G +F+Y++ + + L
Sbjct: 260 GVKRLMSGPVPPSACPPRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLW 319
Query: 368 NAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 413
F FG V + KV D T K FGFV+ + A AIA +NG
Sbjct: 320 QLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 365
Score = 65 (27.9 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 14/62 (22%), Positives = 33/62 (53%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 163
+F+ L + E+ + LF +G + +++++R + KG F+ ++A A+ ++
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 164 NG 165
NG
Sbjct: 364 NG 365
>MGI|MGI:107427 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
Length = 385
Score = 194 (73.4 bits), Expect = 1.4e-18, Sum P(2) = 1.4e-18
Identities = 48/176 (27%), Positives = 96/176 (54%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L V +P++MT+ + ++F ++ +++DK T S G FV ++A+KA+
Sbjct: 50 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 109
Query: 74 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + + + ++V YA + + L++ LPK +++ E+ LFS YG I
Sbjct: 110 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 166
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+IL Q T S+G F++++ + +A A++ +NG+ K G++ P+ VK+A+ +
Sbjct: 167 RILV-DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ-KPSGATEPITVKFANNPSQ 220
Score = 129 (50.5 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 22/64 (34%), Positives = 41/64 (64%)
Query: 350 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 409
ANL++ +P+ +EL F +GR++++++ VD+ TGVS+ GF+ ++ A+ AI
Sbjct: 137 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 196
Query: 410 MMNG 413
+NG
Sbjct: 197 GLNG 200
Score = 123 (48.4 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 27/89 (30%), Positives = 49/89 (55%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+V +PK MT+ +L +F ++ + I+ D+ T SRG F+ R EA++A+
Sbjct: 139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 198
Query: 77 HNKKTLPGASSPLQVKYADGELERLEHKL 105
+ +K GA+ P+ VK+A+ ++ L
Sbjct: 199 NGQKP-SGATEPITVKFANNPSQKSSQAL 226
Score = 120 (47.3 bits), Expect = 0.00021, P = 0.00021
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
NL + ++PQ +E + F + G + S K+ DK TG S +GFV+Y P A+ AI
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 411 MNG 413
+NG
Sbjct: 112 LNG 114
Score = 94 (38.1 bits), Expect = 1.4e-18, Sum P(2) = 1.4e-18
Identities = 30/106 (28%), Positives = 43/106 (40%)
Query: 310 GHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGAN--LFIYHIPQEFGDQELG 367
G + L + P S +P I G G +F+Y++ + + L
Sbjct: 260 GVKRLMSGPVPPSACPPRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLW 319
Query: 368 NAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 413
F FG V + KV D T K FGFV+ + A AIA +NG
Sbjct: 320 QLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 365
Score = 65 (27.9 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 14/62 (22%), Positives = 33/62 (53%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 163
+F+ L + E+ + LF +G + +++++R + KG F+ ++A A+ ++
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 164 NG 165
NG
Sbjct: 364 NG 365
>ZFIN|ZDB-GENE-990415-246 [details] [associations]
symbol:elavl4 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 4 (Hu antigen D)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-246 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR931780 EMBL:CU467068
EMBL:CU929301 IPI:IPI00920316 ProteinModelPortal:F1R133
Ensembl:ENSDART00000134787 ArrayExpress:F1R133 Bgee:F1R133
Uniprot:F1R133
Length = 408
Score = 194 (73.4 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 48/176 (27%), Positives = 96/176 (54%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L V +P++MT+ + ++F ++ +++DK T S G FV ++A+KA+
Sbjct: 87 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 146
Query: 74 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + + + ++V YA + + L++ LPK +++ E+ LFS YG I
Sbjct: 147 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 203
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+IL Q T S+G F++++ + +A A++ +NG+ K G++ P+ VK+A+ +
Sbjct: 204 RILV-DQVTGGSRGVGFIRFDKRIEAEEAIKGLNGQ-KPSGAAEPITVKFANNPSQ 257
Score = 124 (48.7 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
Identities = 27/89 (30%), Positives = 49/89 (55%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+V +PK MT+ +L +F ++ + I+ D+ T SRG F+ R EA++A+
Sbjct: 176 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIKGL 235
Query: 77 HNKKTLPGASSPLQVKYADGELERLEHKL 105
+ +K GA+ P+ VK+A+ ++ L
Sbjct: 236 NGQKP-SGAAEPITVKFANNPSQKTSQAL 263
Score = 122 (48.0 bits), Expect = 0.00014, P = 0.00014
Identities = 21/64 (32%), Positives = 40/64 (62%)
Query: 350 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 409
ANL++ +P+ +EL F +GR++++++ VD+ TG S+ GF+ ++ A+ AI
Sbjct: 174 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIK 233
Query: 410 MMNG 413
+NG
Sbjct: 234 GLNG 237
Score = 120 (47.3 bits), Expect = 0.00023, P = 0.00023
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
NL + ++PQ +E + F + G + S K+ DK TG S +GFV+Y P A+ AI
Sbjct: 89 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 148
Query: 411 MNG 413
+NG
Sbjct: 149 LNG 151
Score = 95 (38.5 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 34/120 (28%), Positives = 50/120 (41%)
Query: 296 PGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGAN--LF 353
P +YP P R L+N +++ V +P I G G +F
Sbjct: 271 PNRRYPGPLHHQAQRFR-LDNLL-NMAYGVKRFSPITIDSMTSLVGMNIPGHTGTGWCIF 328
Query: 354 IYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 413
+Y++ + + L F FG V + KV D T K FGFV+ + A AIA +NG
Sbjct: 329 VYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 388
Score = 65 (27.9 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 14/62 (22%), Positives = 33/62 (53%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 163
+F+ L + E+ + LF +G + +++++R + KG F+ ++A A+ ++
Sbjct: 327 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 386
Query: 164 NG 165
NG
Sbjct: 387 NG 388
>UNIPROTKB|D4AAT0 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
Length = 351
Score = 194 (73.4 bits), Expect = 1.9e-18, Sum P(2) = 1.9e-18
Identities = 48/176 (27%), Positives = 96/176 (54%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L V +P++MT+ + ++F ++ +++DK T S G FV ++A+KA+
Sbjct: 43 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 102
Query: 74 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + + + ++V YA + + L++ LPK +++ E+ LFS YG I
Sbjct: 103 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 159
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+IL Q T S+G F++++ + +A A++ +NG+ K G++ P+ VK+A+ +
Sbjct: 160 RILV-DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ-KPSGATEPITVKFANNPSQ 213
Score = 129 (50.5 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 22/64 (34%), Positives = 41/64 (64%)
Query: 350 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 409
ANL++ +P+ +EL F +GR++++++ VD+ TGVS+ GF+ ++ A+ AI
Sbjct: 130 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 189
Query: 410 MMNG 413
+NG
Sbjct: 190 GLNG 193
Score = 123 (48.4 bits), Expect = 5.6e-10, Sum P(2) = 5.6e-10
Identities = 27/89 (30%), Positives = 49/89 (55%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+V +PK MT+ +L +F ++ + I+ D+ T SRG F+ R EA++A+
Sbjct: 132 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 191
Query: 77 HNKKTLPGASSPLQVKYADGELERLEHKL 105
+ +K GA+ P+ VK+A+ ++ L
Sbjct: 192 NGQKP-SGATEPITVKFANNPSQKSSQAL 219
Score = 120 (47.3 bits), Expect = 0.00018, P = 0.00018
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
NL + ++PQ +E + F + G + S K+ DK TG S +GFV+Y P A+ AI
Sbjct: 45 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 104
Query: 411 MNG 413
+NG
Sbjct: 105 LNG 107
Score = 90 (36.7 bits), Expect = 1.9e-18, Sum P(2) = 1.9e-18
Identities = 25/72 (34%), Positives = 35/72 (48%)
Query: 344 IEGPPGAN--LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESP 401
I G G +F+Y++ + + L F FG V + KV D T K FGFV+ +
Sbjct: 260 IPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNY 319
Query: 402 ASAQNAIAMMNG 413
A AIA +NG
Sbjct: 320 DEAAMAIASLNG 331
Score = 65 (27.9 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 14/62 (22%), Positives = 33/62 (53%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 163
+F+ L + E+ + LF +G + +++++R + KG F+ ++A A+ ++
Sbjct: 270 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 329
Query: 164 NG 165
NG
Sbjct: 330 NG 331
>UNIPROTKB|E1C240 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
IPI:IPI00584568 ProteinModelPortal:E1C240
Ensembl:ENSGALT00000025475 Uniprot:E1C240
Length = 388
Score = 190 (71.9 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
Identities = 48/176 (27%), Positives = 95/176 (53%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L V +P+ MT+ +L ++F ++ +++DK T S G FV ++A+KA+
Sbjct: 66 KTNLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAEKAI 125
Query: 74 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + + + ++V YA + + L++ LPK +++ E+ LFS YG I
Sbjct: 126 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 182
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+IL Q T S+G F++++ + +A A++ +NG+ K ++ P+ VK+A+ +
Sbjct: 183 RILV-DQVTGMSRGVGFIRFDKRIEAEEAIKGLNGQ-KPPAATEPITVKFANNPSQ 236
Score = 126 (49.4 bits), Expect = 5.5e-11, Sum P(2) = 5.5e-11
Identities = 21/64 (32%), Positives = 41/64 (64%)
Query: 350 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 409
ANL++ +P+ +EL F +GR++++++ VD+ TG+S+ GF+ ++ A+ AI
Sbjct: 153 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGMSRGVGFIRFDKRIEAEEAIK 212
Query: 410 MMNG 413
+NG
Sbjct: 213 GLNG 216
Score = 125 (49.1 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
NL + ++PQ +EL + F + G + S K+ DK TG S +GFV+Y P A+ AI
Sbjct: 68 NLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAEKAINT 127
Query: 411 MNG 413
+NG
Sbjct: 128 LNG 130
Score = 123 (48.4 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 26/84 (30%), Positives = 48/84 (57%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+V +PK MT+ +L +F ++ + I+ D+ T SRG F+ R EA++A+
Sbjct: 155 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGMSRGVGFIRFDKRIEAEEAIKGL 214
Query: 77 HNKKTLPGASSPLQVKYADGELER 100
+ +K P A+ P+ VK+A+ ++
Sbjct: 215 NGQKP-PAATEPITVKFANNPSQK 237
Score = 98 (39.6 bits), Expect = 5.5e-11, Sum P(2) = 5.5e-11
Identities = 24/93 (25%), Positives = 43/93 (46%)
Query: 74 NACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
N H + SSP+ G E + L + LP+++++ E+ +LF G I+ +
Sbjct: 42 NTAHGSNAINNCSSPID----SGNTEDSKTNLIVNYLPQSMTQEELKSLFGSIGEIESCK 97
Query: 134 ILRGS-QQTSKGCAFLKYETKEQALAALEAING 165
++R S G F+ Y + A A+ +NG
Sbjct: 98 LVRDKITGQSLGYGFVNYVDPKDAEKAINTLNG 130
Score = 96 (38.9 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
Identities = 33/120 (27%), Positives = 46/120 (38%)
Query: 296 PGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGAN--LF 353
P +YP P R L+N + P I G G +F
Sbjct: 250 PNRRYPAPLAQQAQRFR-LDNLLNMAYGVKSRFPPMTIDGMTSLAGINIPGHAGTGWCIF 308
Query: 354 IYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 413
+Y++ + + L F FG V + KV D T K FGFV+ + A AIA +NG
Sbjct: 309 VYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 368
Score = 63 (27.2 bits), Expect = 4.8e-07, Sum P(2) = 4.8e-07
Identities = 13/62 (20%), Positives = 33/62 (53%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 163
+F+ L + E+ + +F +G + +++++R + KG F+ ++A A+ ++
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 164 NG 165
NG
Sbjct: 367 NG 368
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 195 (73.7 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
Identities = 48/176 (27%), Positives = 97/176 (55%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L V +P++MT+ +L ++F ++ +++DK T S G FV ++A+KA+
Sbjct: 67 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDAEKAI 126
Query: 74 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + + + ++V YA + + L++ LPK +++ E+ LFS +G I
Sbjct: 127 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQFGRIITS 183
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+IL Q T S+G F++++ + +A A++ +NG+ K G++ P+ VK+A+ +
Sbjct: 184 RILV-DQVTGVSRGVGFIRFDRRVEAEEAIKGLNGQ-KPPGATEPITVKFANNPSQ 237
Score = 134 (52.2 bits), Expect = 4.5e-11, Sum P(2) = 4.5e-11
Identities = 29/89 (32%), Positives = 50/89 (56%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+V +PK MT+ +L +F +F + I+ D+ T SRG F+ R EA++A+
Sbjct: 156 LYVSGLPKTMTQKELEQLFSQFGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGL 215
Query: 77 HNKKTLPGASSPLQVKYADGELERLEHKL 105
+ +K PGA+ P+ VK+A+ ++ L
Sbjct: 216 NGQKP-PGATEPITVKFANNPSQKSSQAL 243
Score = 132 (51.5 bits), Expect = 9.9e-06, P = 9.9e-06
Identities = 23/64 (35%), Positives = 41/64 (64%)
Query: 350 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 409
ANL++ +P+ +EL F FGR++++++ VD+ TGVS+ GF+ ++ A+ AI
Sbjct: 154 ANLYVSGLPKTMTQKELEQLFSQFGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIK 213
Query: 410 MMNG 413
+NG
Sbjct: 214 GLNG 217
Score = 125 (49.1 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
NL + ++PQ +EL + F + G + S K+ DK TG S +GFV+Y P A+ AI
Sbjct: 69 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDAEKAINT 128
Query: 411 MNG 413
+NG
Sbjct: 129 LNG 131
Score = 90 (36.7 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
Identities = 22/62 (35%), Positives = 32/62 (51%)
Query: 352 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 411
+F+Y++ + + L F FG V + KV D T K FGFV+ + A AIA +
Sbjct: 307 IFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAIASL 366
Query: 412 NG 413
NG
Sbjct: 367 NG 368
Score = 62 (26.9 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 13/62 (20%), Positives = 32/62 (51%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 163
+F+ L + E + +F +G + +++++R + KG F+ ++A A+ ++
Sbjct: 307 IFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAIASL 366
Query: 164 NG 165
NG
Sbjct: 367 NG 368
>FB|FBgn0260400 [details] [associations]
symbol:elav "embryonic lethal abnormal vision" species:7227
"Drosophila melanogaster" [GO:0005634 "nucleus" evidence=IDA;TAS]
[GO:0015030 "Cajal body" evidence=IDA] [GO:0007417 "central nervous
system development" evidence=IMP] [GO:0016070 "RNA metabolic
process" evidence=NAS] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0007399 "nervous system development" evidence=NAS] [GO:0008266
"poly(U) RNA binding" evidence=IDA] [GO:0031441 "negative
regulation of mRNA 3'-end processing" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0008266 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:AL022139
GO:GO:0007417 GO:GO:0009790 GO:GO:0007281 GO:GO:0015030
GO:GO:0000900 GO:GO:0031441 GO:GO:0007319 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 EMBL:M21152 EMBL:AY051822
PIR:A33130 RefSeq:NP_001014713.1 RefSeq:NP_001138142.1
RefSeq:NP_001245447.1 RefSeq:NP_525033.1 UniGene:Dm.4473
ProteinModelPortal:P16914 SMR:P16914 DIP:DIP-23700N IntAct:P16914
MINT:MINT-1597597 STRING:P16914 PaxDb:P16914 PRIDE:P16914
EnsemblMetazoa:FBtr0070091 EnsemblMetazoa:FBtr0307173 GeneID:31000
KEGG:dme:Dmel_CG4262 CTD:31000 FlyBase:FBgn0260400 eggNOG:NOG256997
InParanoid:Q7K7L9 OMA:DIGESKT PhylomeDB:P16914 GenomeRNAi:31000
NextBio:771397 Bgee:P16914 GermOnline:CG4262 Uniprot:P16914
Length = 483
Score = 173 (66.0 bits), Expect = 3.1e-18, Sum P(2) = 3.1e-18
Identities = 50/186 (26%), Positives = 100/186 (53%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTT--------RA-----SRGCCF 60
R L V +P+ MTE ++ ++F ++ V +I+DK+ +A S G F
Sbjct: 148 RTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGF 207
Query: 61 VICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEV 119
V Q+A++AVN + + + ++V +A + ++ L++ LPK +++ E+
Sbjct: 208 VNYVRPQDAEQAVNVLNGLRL---QNKTIKVSFARPSSDAIKGANLYVSGLPKTMTQQEL 264
Query: 120 SALFSIYGTIKDLQILR--GSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLV 177
A+F+ +G I +IL+ G+ +KG F++++ +E+A A+ A+NG + P+V
Sbjct: 265 EAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALNGTTPSSCTD-PIV 323
Query: 178 VKWADT 183
VK+++T
Sbjct: 324 VKFSNT 329
Score = 119 (46.9 bits), Expect = 3.1e-18, Sum P(2) = 3.1e-18
Identities = 42/158 (26%), Positives = 60/158 (37%)
Query: 263 AMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYP--GGMLGHRPLNNSPGS 320
A+ G +P ++ ++ P P +P P GG + H P+N
Sbjct: 309 ALNGTTPSSCTDPIVVKFSNTPGSTSKIIQPQLPAFLNPQLVRRIGGAM-HTPVNKGLAR 367
Query: 321 VSPAVANSN----PXXXXXXXXXXXXQIEGPPGAN-LFIYHIPQEFGDQELGNAFQAFGR 375
SP + P GP GA +FIY++ E + L F FG
Sbjct: 368 FSPMAGDMLDVMLPNGLGAAAAAATTLASGPGGAYPIFIYNLAPETEEAALWQLFGPFGA 427
Query: 376 VLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 413
V S K+ D T K +GFVS + A AI +NG
Sbjct: 428 VQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRALNG 465
>UNIPROTKB|Q91903 [details] [associations]
symbol:elavl2 "ELAV-like protein 2" species:8355 "Xenopus
laevis" [GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0008298 "intracellular mRNA
localization" evidence=IMP] [GO:0017131 "uridine-rich cytoplasmic
polyadenylylation element binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA;IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0051260 "protein homooligomerization" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0007399 GO:GO:0000166
GO:GO:0051260 Gene3D:3.30.70.330 GO:GO:0000122 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
HSSP:P26378 KO:K13208 EMBL:X85111 EMBL:U17597 EMBL:BC170539
EMBL:BC094189 PIR:I51676 RefSeq:NP_001081035.1
RefSeq:NP_001081613.1 UniGene:Xl.1648 UniGene:Xl.34955
ProteinModelPortal:Q91903 SMR:Q91903 MINT:MINT-2880431
GeneID:394342 GeneID:397952 KEGG:xla:394342 KEGG:xla:397952
CTD:394342 CTD:397952 Xenbase:XB-GENE-6254447
Xenbase:XB-GENE-866091 GO:GO:0017131 Uniprot:Q91903
Length = 389
Score = 191 (72.3 bits), Expect = 8.7e-18, Sum P(2) = 8.7e-18
Identities = 49/177 (27%), Positives = 97/177 (54%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRA-SRGCCFVICPSRQEADKA 72
+ L V +P++MT+ +L ++F ++ +++DK T S G FV ++A+KA
Sbjct: 65 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKA 124
Query: 73 VNACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKD 131
+N + + + ++V YA + + L++ LPK +++ E+ LFS YG I
Sbjct: 125 INTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 181
Query: 132 LQILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+IL Q T S+G F++++ + +A A++ +NG+ K G++ P+ VK+A+ +
Sbjct: 182 SRILV-DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ-KPPGATEPITVKFANNPSQ 236
Score = 140 (54.3 bits), Expect = 9.2e-12, Sum P(2) = 9.2e-12
Identities = 28/89 (31%), Positives = 52/89 (58%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+V +PK MT+ +L +F ++ + I+ D+ T SRG F+ R EA++A+
Sbjct: 155 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 214
Query: 77 HNKKTLPGASSPLQVKYADGELERLEHKL 105
+ +K PGA+ P+ VK+A+ +++ H +
Sbjct: 215 NGQKP-PGATEPITVKFANNPSQKVNHTI 242
Score = 129 (50.5 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 22/64 (34%), Positives = 41/64 (64%)
Query: 350 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 409
ANL++ +P+ +EL F +GR++++++ VD+ TGVS+ GF+ ++ A+ AI
Sbjct: 153 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 212
Query: 410 MMNG 413
+NG
Sbjct: 213 GLNG 216
Score = 115 (45.5 bits), Expect = 0.00078, P = 0.00078
Identities = 25/64 (39%), Positives = 37/64 (57%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKAT-GVSKCFGFVSYESPASAQNAIA 409
NL + ++PQ +EL + F + G + S K+ DK T G S +GFV+Y P A+ AI
Sbjct: 67 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAIN 126
Query: 410 MMNG 413
+NG
Sbjct: 127 TLNG 130
Score = 90 (36.7 bits), Expect = 8.7e-18, Sum P(2) = 8.7e-18
Identities = 22/62 (35%), Positives = 32/62 (51%)
Query: 352 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 411
+F+Y++ + + L F FG V + KV D T K FGFV+ + A AIA +
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 412 NG 413
NG
Sbjct: 368 NG 369
Score = 65 (27.9 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
Identities = 16/82 (19%), Positives = 42/82 (51%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 163
+F+ L + E+ + +F +G + +++++R + KG F+ ++A A+ ++
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 164 NGKHKMEGSSVPLVVKWADTEK 185
NG +++ + + K + T K
Sbjct: 368 NG-YRLGDRVLQVSFKTSKTHK 388
>UNIPROTKB|K7EJK3 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:14015 EMBL:AC015961 EMBL:AC090386
EMBL:AC093332 EMBL:AC129908 Ensembl:ENST00000589229 Uniprot:K7EJK3
Length = 162
Score = 219 (82.2 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 51/109 (46%), Positives = 68/109 (62%)
Query: 88 PLQVKYADGE-------LER---LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG 137
P+QVK AD E L + + KLF+GML K SE +V LF +G I++ ILRG
Sbjct: 4 PIQVKPADSESRGGSSCLRQPPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRG 63
Query: 138 SQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
SKGCAF+KY + +A AA+ A++G M G+S LVVK+ADT+KE
Sbjct: 64 PDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKE 112
Score = 170 (64.9 bits), Expect = 3.3e-12, P = 3.3e-12
Identities = 36/90 (40%), Positives = 53/90 (58%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
KLFVG + K +E + +F+ F ++E I++ S+GC FV S EA A+NA
Sbjct: 30 KLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGN-SKGCAFVKYSSHAEAQAAINA 88
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKL 105
H +T+PGASS L VK+AD + ER ++
Sbjct: 89 LHGSQTMPGASSSLVVKFADTDKERTMRRM 118
>FB|FBgn0038345 [details] [associations]
symbol:CG5213 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0022008
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339
GeneTree:ENSGT00560000077064 EMBL:AY089405 RefSeq:NP_650473.1
UniGene:Dm.5039 SMR:Q9VF55 STRING:Q9VF55 EnsemblMetazoa:FBtr0083148
GeneID:41892 KEGG:dme:Dmel_CG5213 UCSC:CG5213-RA
FlyBase:FBgn0038345 eggNOG:NOG294033 InParanoid:Q9VF55 OMA:RRERTND
OrthoDB:EOG4DNCM8 GenomeRNAi:41892 NextBio:826136 Uniprot:Q9VF55
Length = 251
Score = 216 (81.1 bits), Expect = 2.7e-17, P = 2.7e-17
Identities = 58/177 (32%), Positives = 94/177 (53%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCC--FVICPSRQEADK 71
+ L + +P+ MTE++L +F +F + + II+ + T S CC FV S ++A
Sbjct: 40 KTNLILNYLPQDMTESELHRLFSKFGEIRKAKIIRHRRTGIS--CCYGFVDYVSERQAAA 97
Query: 72 AVNACHNKKTLPGASSPLQVKYA-DGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
AVN +T L+V +A E E L++G LP + E +V LF+ YG I
Sbjct: 98 AVNGMDGYET---RGKRLKVAFARPSEYESTSSSLYVGNLPTYMDEKKVRELFATYGNIV 154
Query: 131 DLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
D+ +LR S+G AFL++E A A ++ ++ +EG+S PL VK+ + EK+
Sbjct: 155 DVNLLRHKFNNRSRGVAFLQFELVRDAEVAKYGMD-RYMIEGASRPLTVKFVEREKK 210
Score = 126 (49.4 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
NL + ++PQ+ + EL F FG + AK+ + TG+S C+GFV Y S A A+
Sbjct: 42 NLILNYLPQDMTESELHRLFSKFGEIRKAKIIRHRRTGISCCYGFVDYVSERQAAAAVNG 101
Query: 411 MNG 413
M+G
Sbjct: 102 MDG 104
>UNIPROTKB|Q1JQ73 [details] [associations]
symbol:elavl1-a "ELAV-like protein 1-A" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005938
"cell cortex" evidence=IDA] [GO:0007369 "gastrulation"
evidence=IMP] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0008298 "intracellular mRNA localization" evidence=IMP]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA;IPI]
[GO:0031440 "regulation of mRNA 3'-end processing" evidence=IC]
[GO:0048255 "mRNA stabilization" evidence=IC;IGI] [GO:0051259
"protein oligomerization" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
KO:K13208 EMBL:U17596 EMBL:BC116459 PIR:I51675
RefSeq:NP_001084078.1 UniGene:Xl.49136 ProteinModelPortal:Q1JQ73
SMR:Q1JQ73 MINT:MINT-274235 PRIDE:Q1JQ73 GeneID:399292
KEGG:xla:399292 CTD:399292 Xenbase:XB-GENE-6254178 GO:GO:0031440
Uniprot:Q1JQ73
Length = 337
Score = 179 (68.1 bits), Expect = 4.0e-17, Sum P(2) = 4.0e-17
Identities = 52/182 (28%), Positives = 98/182 (53%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTT----RASR-------GCCFVI 62
R L V +P++MT+ +L ++F V+ +I+DK R+S G FV
Sbjct: 19 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGFEMRSSSLSKGHSLGYGFVN 78
Query: 63 CPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSA 121
+ ++A++A+N + + S ++V +A E ++ L+I LP+ +++ +V
Sbjct: 79 YLNAKDAERAINTLNGLRL---QSKTIKVSFARPSSESIKDANLYISGLPRTMTQKDVED 135
Query: 122 LFSIYGTIKDLQILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179
+F +G I + ++L Q T S+G AF++++ + +A A+ + NG HK GSS P+ VK
Sbjct: 136 MFLPFGHIINSRVLV-DQATGLSRGVAFIRFDKRSEAEEAIASFNG-HKPPGSSEPITVK 193
Query: 180 WA 181
+A
Sbjct: 194 FA 195
Score = 124 (48.7 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 22/64 (34%), Positives = 42/64 (65%)
Query: 350 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 409
ANL+I +P+ +++ + F FG +++++V VD+ATG+S+ F+ ++ + A+ AIA
Sbjct: 117 ANLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIA 176
Query: 410 MMNG 413
NG
Sbjct: 177 SFNG 180
Score = 94 (38.1 bits), Expect = 4.0e-17, Sum P(2) = 4.0e-17
Identities = 23/62 (37%), Positives = 33/62 (53%)
Query: 352 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 411
+F+Y++ Q+ + L F FG V + KV D T K FGFV+ + A AIA +
Sbjct: 257 IFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 316
Query: 412 NG 413
NG
Sbjct: 317 NG 318
>FB|FBgn0010263 [details] [associations]
symbol:Rbp9 "RNA-binding protein 9" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0007293
"germarium-derived egg chamber formation" evidence=TAS] [GO:0005634
"nucleus" evidence=TAS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0048477
"oogenesis" evidence=IMP] [GO:0036093 "germ cell proliferation"
evidence=IMP] [GO:0060856 "establishment of blood-brain barrier"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0007293 TIGRFAMs:TIGR01661
HSSP:P26378 GO:GO:0060856 FlyBase:FBgn0010263 EMBL:S55886
ProteinModelPortal:Q26293 SMR:Q26293 STRING:Q26293 PRIDE:Q26293
InParanoid:Q26293 ArrayExpress:Q26293 Bgee:Q26293 Uniprot:Q26293
Length = 444
Score = 193 (73.0 bits), Expect = 4.2e-17, Sum P(2) = 4.2e-17
Identities = 50/176 (28%), Positives = 98/176 (55%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L V +P+ M++ ++ ++F F V+ +I+DK T S G FV +++A+KA+
Sbjct: 109 KTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAI 168
Query: 74 NACHNKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
NA + + + ++V A E ++ L++ LPKN++++++ +LFS YG I
Sbjct: 169 NALNGLRL---QNKTIKVSIARPSSESIKGANLYVSGLPKNMTQSDLESLFSPYGKIITS 225
Query: 133 QIL----RGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWAD 182
+IL G SKG F++++ + +A A++ +NG + S+ P+ VK+A+
Sbjct: 226 RILCDNITGEHAAGLSKGVGFIRFDQRFEADRAIKELNGTTP-KNSTEPITVKFAN 280
Score = 135 (52.6 bits), Expect = 5.8e-06, P = 5.8e-06
Identities = 32/105 (30%), Positives = 48/105 (45%)
Query: 309 LGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQEFGDQELGN 368
+G NN+ + + N+N E P NL + ++PQ E+ +
Sbjct: 69 VGQATANNAASNNNNNNNNTNNNNNNNATANNNNNNEPDPKTNLIVNYLPQTMSQDEIRS 128
Query: 369 AFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 413
F +FG V S K+ DK TG S +GFV+Y A+ AI +NG
Sbjct: 129 LFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINALNG 173
Score = 84 (34.6 bits), Expect = 4.2e-17, Sum P(2) = 4.2e-17
Identities = 21/62 (33%), Positives = 31/62 (50%)
Query: 352 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 411
+F+Y++ + + L F FG V S KV D + K FGFV+ + A AI +
Sbjct: 363 IFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSL 422
Query: 412 NG 413
NG
Sbjct: 423 NG 424
>ZFIN|ZDB-GENE-990415-245 [details] [associations]
symbol:elavl1 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 1 (Hu antigen R)" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-245 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:BX649372 IPI:IPI00817195
PRIDE:F1QM02 Ensembl:ENSDART00000146123 ArrayExpress:F1QM02
Bgee:F1QM02 Uniprot:F1QM02
Length = 340
Score = 179 (68.1 bits), Expect = 5.3e-17, Sum P(2) = 5.3e-17
Identities = 44/170 (25%), Positives = 93/170 (54%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L V +P++M++ +L ++F V+ +I+DK S G FV + +A++A+
Sbjct: 33 KTNLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPNDAERAI 92
Query: 74 NACHNKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
+ + + S ++V YA + ++ L+I LPK +++ +V +F YG I +
Sbjct: 93 STLNGLRL---QSKTIKVSYARPSSDSIKDANLYISGLPKTMTQKDVEEMFGRYGRIINS 149
Query: 133 QILRGSQQ-TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181
++L S+G AF++++ + +A A++ +NG+ K G++ + VK+A
Sbjct: 150 RVLVDQASGLSRGVAFIRFDKRAEAEDAIKDLNGQ-KPPGAAEQMTVKFA 198
Score = 130 (50.8 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 26/63 (41%), Positives = 38/63 (60%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
NL + ++PQ EL + F + G V SAK+ DK G S +GFV+Y +P A+ AI+
Sbjct: 35 NLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPNDAERAIST 94
Query: 411 MNG 413
+NG
Sbjct: 95 LNG 97
Score = 120 (47.3 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 21/64 (32%), Positives = 43/64 (67%)
Query: 350 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 409
ANL+I +P+ +++ F +GR+++++V VD+A+G+S+ F+ ++ A A++AI
Sbjct: 120 ANLYISGLPKTMTQKDVEEMFGRYGRIINSRVLVDQASGLSRGVAFIRFDKRAEAEDAIK 179
Query: 410 MMNG 413
+NG
Sbjct: 180 DLNG 183
Score = 93 (37.8 bits), Expect = 5.3e-17, Sum P(2) = 5.3e-17
Identities = 24/62 (38%), Positives = 32/62 (51%)
Query: 352 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 411
+FIY++ Q+ + L F FG V + KV D T K FGFV+ A AIA +
Sbjct: 260 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTHYEEAAMAIASL 319
Query: 412 NG 413
NG
Sbjct: 320 NG 321
Score = 87 (35.7 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 23/73 (31%), Positives = 38/73 (52%)
Query: 94 ADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQT-SKGCAFLKYET 152
AD EL + L + LP+N+S+ E+ +LFS G ++ +++R S G F+ Y
Sbjct: 26 AD-ELIDSKTNLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLN 84
Query: 153 KEQALAALEAING 165
A A+ +NG
Sbjct: 85 PNDAERAISTLNG 97
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 166 (63.5 bits), Expect = 9.5e-17, Sum P(2) = 9.5e-17
Identities = 44/150 (29%), Positives = 73/150 (48%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG + +T++QL F + V V + +D TTR S G +V + Q+A +A+N
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
Query: 77 HNKKTLPGASSPLQVKYADGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 135
N L G + + D L + +FI L K++ + FS +G I ++
Sbjct: 107 -NFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVA 165
Query: 136 RGSQQTSKGCAFLKYETKEQALAALEAING 165
SKG F++Y+T E A A++ +NG
Sbjct: 166 VDPSGQSKGYGFVQYDTDEAAQGAIDKLNG 195
Score = 143 (55.4 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 75/329 (22%), Positives = 140/329 (42%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
++V + + +++ +L +F EF + I++D + S+G FV + +A +AV+A
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGK-SKGFGFVNFENSDDAARAVDAL 284
Query: 77 H-----NKKTLPGAS-------SPLQVKYADGELERLEHK----LFIGMLPKNVSEAEVS 120
+ +K+ G + + L+ K+ E + L++ L ++V++ ++
Sbjct: 285 NGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLR 344
Query: 121 ALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180
F+ +GTI +++R S+G F+ + T E+A A+ +NGK + + PL V
Sbjct: 345 EHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMNGKMIV---TKPLYVAL 401
Query: 181 ADTEKEXXXXXXXXXXXXXN-NLPNADSQHPSLF--GALPMGYAPPYNGYGYQA---SGS 234
A +++ N+P A ++ G PMG Y G G A
Sbjct: 402 AQRKEDRKARLQAQFSQMRPVNMPPAVGPRMQMYPPGGPPMGQQLFY-GQGPPAMIPQPG 460
Query: 235 YGLMQYRLPPMQ--NQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGY 292
+G Q +P M+ P + +P + QG + G R A+P
Sbjct: 461 FGYQQQLVPGMRPGGSPMPNFFMPMMQQGQQQQQQQQQQQRPGGGRRGALPQPQ-----Q 515
Query: 293 PAVPGLQYPMPYPGGMLGH--RPLNNSPG 319
P+ P +Q M G M + R +N PG
Sbjct: 516 PS-PMMQQQMHPRGRMYRYPQRDVNTMPG 543
Score = 124 (48.7 bits), Expect = 4.4e-07, Sum P(2) = 4.4e-07
Identities = 27/63 (42%), Positives = 39/63 (61%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N+FI ++ + + L F AFG +LS KV VD + G SK +GFV Y++ +AQ AI
Sbjct: 134 NIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPS-GQSKGYGFVQYDTDEAAQGAIDK 192
Query: 411 MNG 413
+NG
Sbjct: 193 LNG 195
Score = 117 (46.2 bits), Expect = 9.5e-17, Sum P(2) = 9.5e-17
Identities = 25/65 (38%), Positives = 38/65 (58%)
Query: 349 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 408
G+NL++ ++ + D +L F FG + S KV D + GVS+ GFV++ +P A AI
Sbjct: 326 GSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPS-GVSRGSGFVAFSTPEEATRAI 384
Query: 409 AMMNG 413
MNG
Sbjct: 385 TEMNG 389
Score = 109 (43.4 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 34/155 (21%), Positives = 72/155 (46%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
+F+ + K + L F F + + D + + S+G FV + + A A++
Sbjct: 135 IFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQ-SKGYGFVQYDTDEAAQGAIDKL 193
Query: 77 H-----NKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKD 131
+ +K+ G + GE + + +++ L +++S+ E++ +F +G
Sbjct: 194 NGMLLNDKQVYVGPFVHKLQRDPSGEKVKFTN-VYVKNLSESLSDEELNKVFGEFGVTTS 252
Query: 132 LQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 166
I+R + SKG F+ +E + A A++A+NGK
Sbjct: 253 CVIMRDGEGKSKGFGFVNFENSDDAARAVDALNGK 287
Score = 101 (40.6 bits), Expect = 4.4e-15, Sum P(2) = 4.4e-15
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N+++ ++ + D+EL F FG S + D G SK FGFV++E+ A A+
Sbjct: 225 NVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRD-GEGKSKGFGFVNFENSDDAARAVDA 283
Query: 411 MNG 413
+NG
Sbjct: 284 LNG 286
Score = 69 (29.3 bits), Expect = 4.4e-07, Sum P(2) = 4.4e-07
Identities = 17/72 (23%), Positives = 37/72 (51%)
Query: 94 ADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYET 152
A G ++ L++G L V+++++ F+ G + +++ R + + S G ++ Y T
Sbjct: 36 AAGAAQQGTTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYAT 95
Query: 153 KEQALAALEAIN 164
+ A AL +N
Sbjct: 96 PQDASRALNELN 107
>ZFIN|ZDB-GENE-000210-17 [details] [associations]
symbol:hug "HuG" species:7955 "Danio rerio"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000210-17 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR550302 IPI:IPI00998450
ProteinModelPortal:F1QUX1 Ensembl:ENSDART00000122728
ArrayExpress:F1QUX1 Bgee:F1QUX1 Uniprot:F1QUX1
Length = 368
Score = 177 (67.4 bits), Expect = 9.6e-17, Sum P(2) = 9.6e-17
Identities = 48/178 (26%), Positives = 94/178 (52%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDK--------TTRASRGCCFVICPS 65
+ L + +P++M++ +L ++F V+ +I+DK T S G FV +
Sbjct: 55 KTNLIINYLPQNMSQEELRSLFSSIGEVESAKLIRDKMAGMSAHHTLGHSLGYGFVNYVN 114
Query: 66 RQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSALFS 124
+A++A+N + + S ++V YA + ++ L+I LPK +++ V +F+
Sbjct: 115 PSDAERAINTLNGLRL---QSKTIKVSYARPSSDGIKDANLYISGLPKTMTQKNVEDMFT 171
Query: 125 IYGTIKDLQILRGSQQ-TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181
YG I + +IL S+G AF++++ + +A A++ +NG K G+S P+ VK+A
Sbjct: 172 QYGRIINSRILVDQASGLSRGVAFIRFDKRSEAEEAIKDLNGS-KPSGASEPITVKFA 228
Score = 118 (46.6 bits), Expect = 0.00033, P = 0.00033
Identities = 20/69 (28%), Positives = 44/69 (63%)
Query: 345 EGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASA 404
+G ANL+I +P+ + + + F +GR++++++ VD+A+G+S+ F+ ++ + A
Sbjct: 145 DGIKDANLYISGLPKTMTQKNVEDMFTQYGRIINSRILVDQASGLSRGVAFIRFDKRSEA 204
Query: 405 QNAIAMMNG 413
+ AI +NG
Sbjct: 205 EEAIKDLNG 213
Score = 115 (45.5 bits), Expect = 0.00071, P = 0.00071
Identities = 27/71 (38%), Positives = 40/71 (56%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKC--------FGFVSYESPA 402
NL I ++PQ +EL + F + G V SAK+ DK G+S +GFV+Y +P+
Sbjct: 57 NLIINYLPQNMSQEELRSLFSSIGEVESAKLIRDKMAGMSAHHTLGHSLGYGFVNYVNPS 116
Query: 403 SAQNAIAMMNG 413
A+ AI +NG
Sbjct: 117 DAERAINTLNG 127
Score = 95 (38.5 bits), Expect = 9.6e-17, Sum P(2) = 9.6e-17
Identities = 33/110 (30%), Positives = 49/110 (44%)
Query: 306 GGMLGHRP--LNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQEFGD 363
GG + H+P SP SV +V++ N G +F+Y++ Q+ +
Sbjct: 252 GGPVHHQPQRFRFSPMSVDHSVSSMNVASSSSS------------GWCIFVYNLGQDADE 299
Query: 364 QELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 413
L F FG V + KV D T K FGFV+ + A AI+ +NG
Sbjct: 300 GILWQMFGPFGAVTNVKVIRDFNTSKCKGFGFVTMTNYEEAAMAISSLNG 349
>POMBASE|SPAC57A7.04c [details] [associations]
symbol:pabp "mRNA export shuttling protein"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
IntAct:P31209 STRING:P31209 PRIDE:P31209
EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
Length = 653
Score = 150 (57.9 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 82/315 (26%), Positives = 131/315 (41%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
+++ + +TE + +F +F + ++++KD+ + RG FV + + A KAV+
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKP-RGFGFVNYANHECAQKAVDEL 321
Query: 77 HNK-----KTLPGASSP-------LQVKYADGELERLEH----KLFIGMLPKNVSEAEVS 120
++K K G + L+ +Y +LE++ LFI L V + +
Sbjct: 322 NDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLK 381
Query: 121 ALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180
A FS +GTI +I+ Q SKG F+ Y T E+A A+ +N + + G PL V
Sbjct: 382 AEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMN-QRMLAGK--PLYVAL 438
Query: 181 ADTEKEXXXXXXXXXXXXXNNLP-----NADSQHPSL-FGAL-PMGYAPPYNGYGYQASG 233
A KE N A + P++ +GA P+ Y P GY A+
Sbjct: 439 AQ-RKEVRRSQLEAQIQARNQFRLQQQVAAAAGIPAVQYGATGPLIYGP--GGYPIPAAV 495
Query: 234 SYGLMQYRLP----PMQNQPGFHGIIP-----PVNQGNAMRGASPDLSSNMGPRNYAMPP 284
+ G +P PM PG P P G RG P M ++P
Sbjct: 496 N-GRGMPMVPGHNGPMPMYPGMPTQFPAGGPAPGYPGMNARGPVPAQGRPMMMPG-SVPS 553
Query: 285 SGFV-GSGYPAVPGL 298
+G PAVPG+
Sbjct: 554 AGPAEAEAVPAVPGM 568
Score = 148 (57.2 bits), Expect = 1.0e-16, Sum P(2) = 1.0e-16
Identities = 38/150 (25%), Positives = 70/150 (46%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG++ +TEA L +F V + + +D TR S G +V + ++ +KA++
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141
Query: 77 HNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 135
N + G + D L ++ +FI L + + FS +G I ++
Sbjct: 142 -NYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVA 200
Query: 136 RGSQQTSKGCAFLKYETKEQALAALEAING 165
+KG F+ +++ E A AA+E +NG
Sbjct: 201 VDELGNAKGYGFVHFDSVESANAAIEHVNG 230
Score = 136 (52.9 bits), Expect = 1.0e-16, Sum P(2) = 1.0e-16
Identities = 29/64 (45%), Positives = 37/64 (57%)
Query: 349 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 408
G NLFI ++ E D+ L F AFG + SAK+ D+ G SK FGFV Y +P A A+
Sbjct: 363 GVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQ-GKSKGFGFVCYTTPEEANKAV 421
Query: 409 AMMN 412
MN
Sbjct: 422 TEMN 425
Score = 85 (35.0 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 19/62 (30%), Positives = 33/62 (53%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N++I ++ E +QE + F FG + S + D+ + FGFV+Y + AQ A+
Sbjct: 262 NVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQ-NDKPRGFGFVNYANHECAQKAVDE 320
Query: 411 MN 412
+N
Sbjct: 321 LN 322
Score = 78 (32.5 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 39/137 (28%), Positives = 50/137 (36%)
Query: 276 GPRNYAMPPSGFVGSGYPAVPGLQYPMP-YPGGMLGHRPLNN-SPGSVSPAVANSNPXXX 333
GP Y +P + G G P VPG PMP YPG M P +PG P
Sbjct: 485 GPGGYPIP-AAVNGRGMPMVPGHNGPMPMYPG-MPTQFPAGGPAPGYPGMNARGPVPAQG 542
Query: 334 XXXXXXXXXQIEGPPGANLF--IYHIPQEFGDQELG-----NAFQAFGRVLSAKVFVDKA 386
GP A + +P+ F +L + Q G +L KVFV +
Sbjct: 543 RPMMMPGSVPSAGPAEAEAVPAVPGMPERFTAADLAAVPEESRKQVLGELLYPKVFVREE 602
Query: 387 TGVSKCFGFVSYESPAS 403
K G + E P S
Sbjct: 603 KLSGKITGML-LEMPNS 618
>WB|WBGene00003903 [details] [associations]
symbol:pab-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000003
GO:GO:0003723 eggNOG:COG0724 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
GeneTree:ENSGT00640000091232 EMBL:Z50110 PIR:T21095
RefSeq:NP_510260.1 ProteinModelPortal:Q19579 SMR:Q19579
STRING:Q19579 PaxDb:Q19579 PRIDE:Q19579 EnsemblMetazoa:F18H3.3a.1
EnsemblMetazoa:F18H3.3a.2 EnsemblMetazoa:F18H3.3a.3
EnsemblMetazoa:F18H3.3a.4 GeneID:181473 KEGG:cel:CELE_F18H3.3
UCSC:F18H3.3a.3 CTD:181473 WormBase:F18H3.3a InParanoid:Q19579
OMA:YEESNIG NextBio:914090 ArrayExpress:Q19579 Uniprot:Q19579
Length = 692
Score = 150 (57.9 bits), Expect = 1.9e-16, Sum P(2) = 1.9e-16
Identities = 38/150 (25%), Positives = 70/150 (46%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L++G + ++EA L F V + + +D T+R S G +V +A++A++
Sbjct: 59 LYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDTM 118
Query: 77 HNKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 135
N + + G + D R + +FI L + + V FS++G I ++
Sbjct: 119 -NFEVIHGRPMRIMWSQRDPAARRAGNGNIFIKNLDRVIDNKSVYDTFSLFGNILSCKVA 177
Query: 136 RGSQQTSKGCAFLKYETKEQALAALEAING 165
+ SKG F+ +ET+ A A+E +NG
Sbjct: 178 TDDEGNSKGYGFVHFETEHSAQTAIEKVNG 207
Score = 132 (51.5 bits), Expect = 1.9e-16, Sum P(2) = 1.9e-16
Identities = 28/64 (43%), Positives = 39/64 (60%)
Query: 349 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 408
G NL++ +I ++ D L + F +FG + SAKV VD+ G SK FGFV +E P A A+
Sbjct: 342 GVNLYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVDE-NGRSKGFGFVCFEKPEEATAAV 400
Query: 409 AMMN 412
MN
Sbjct: 401 TDMN 404
Score = 119 (46.9 bits), Expect = 0.00065, P = 0.00065
Identities = 68/250 (27%), Positives = 98/250 (39%)
Query: 70 DKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSE-AEVSAL---FSI 125
D ++ C +K S+ L+ KY + ER++ + + KN+ E L FS
Sbjct: 307 DCKLSVCRAQKKSE-RSAELKRKYEALKQERVQRYQGVNLYVKNIEEDLNDDGLRDHFSS 365
Query: 126 YGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEK 185
+GTI +++ SKG F+ +E E+A AA+ +N K M G+ PL V A ++
Sbjct: 366 FGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTDMNSK--MIGAK-PLYVALAQRKE 422
Query: 186 EXXXXXXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGY----GYQASGSYGLM--- 238
+ L Q S A+ Y P GY A G G
Sbjct: 423 DRRAQLASQYMQRLATLRMG--QQASGVPAMTQLYQPGQQGYFVPNPMNAQGRPGFQPQS 480
Query: 239 -QYRLPP----MQNQPGFHGIIPPVNQGNA--MRGASPDLSSNMGPRNYAMPPSGFVGSG 291
Q R PP QNQ P NQ + P + +N G Y M P +G
Sbjct: 481 AQIRGPPGQRVFQNQMFMQY---PFNQRQVYPQQQGRPPMRTNDGRPQYGMAPRP---AG 534
Query: 292 YPAV--PGLQ 299
P V PG+Q
Sbjct: 535 APRVGGPGVQ 544
Score = 93 (37.8 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 37/176 (21%), Positives = 74/176 (42%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
+F+ + + + + F F + + D S+G FV + A A+
Sbjct: 147 IFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGN-SKGYGFVHFETEHSAQTAIEKV 205
Query: 77 H-----NKKTLPGASSPLQVKYAD-GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
+ +KK G P + + GE +F+ +++ + ++SA+FS +G I
Sbjct: 206 NGMLLSDKKVYVGKFQPRAQRMKELGESGLKYTNVFVKNFGEHLDQEKLSAMFSKFGEIT 265
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
++ +Q KG F+ + ++ A A+E +N +EG+ L V A + E
Sbjct: 266 SAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLNDSI-LEGTDCKLSVCRAQKKSE 320
Score = 90 (36.7 bits), Expect = 4.3e-12, Sum P(2) = 4.3e-12
Identities = 20/62 (32%), Positives = 32/62 (51%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N+F+ + + ++L F FG + SA V D A G K FGFV++ +A A+
Sbjct: 239 NVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTD-AQGKPKGFGFVAFADQDAAGQAVEK 297
Query: 411 MN 412
+N
Sbjct: 298 LN 299
Score = 48 (22.0 bits), Expect = 9.2e-08, Sum P(2) = 9.2e-08
Identities = 19/60 (31%), Positives = 24/60 (40%)
Query: 210 PSLFG-ALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGAS 268
P + G + MG AP G G+ Y+ PP Q QP H P G +G S
Sbjct: 536 PRVGGPGVQMGGAP-IRQQGPAPRGAPQKPFYQGPPRQQQPQQHSQQPAQQPGQQGQGQS 594
Score = 41 (19.5 bits), Expect = 4.8e-07, Sum P(2) = 4.8e-07
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 343 QIEGPPGANLF 353
QI GPPG +F
Sbjct: 482 QIRGPPGQRVF 492
>TAIR|locus:2199700 [details] [associations]
symbol:PAB3 "poly(A) binding protein 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006397
"mRNA processing" evidence=IGI] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AC003979 EMBL:Y12227
EMBL:AF293840 EMBL:AY054490 IPI:IPI00543342 PIR:T00768
RefSeq:NP_173690.1 UniGene:At.208 ProteinModelPortal:O64380
SMR:O64380 PaxDb:O64380 PRIDE:O64380 EnsemblPlants:AT1G22760.1
GeneID:838882 KEGG:ath:AT1G22760 TAIR:At1g22760 InParanoid:O64380
OMA:SSISHQK PhylomeDB:O64380 ProtClustDB:CLSN2679283
Genevestigator:O64380 GermOnline:AT1G22760 Uniprot:O64380
Length = 660
Score = 145 (56.1 bits), Expect = 2.3e-16, Sum P(2) = 2.3e-16
Identities = 42/152 (27%), Positives = 76/152 (50%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+ G + +TEA L +FK A V V + +D+ R S G ++ + +A +A+ A
Sbjct: 51 LYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRR-SLGYAYINFSNPNDAYRAMEAL 109
Query: 77 HNKKTLPGASSPLQVKYADGELE-RLEHK--LFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
+ P P+++ ++ + RL K +FI L ++ + FS +GTI +
Sbjct: 110 NYT---PLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCK 166
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAING 165
+ SKG F+++E +E A AA++ +NG
Sbjct: 167 VAMDVTGRSKGYGFVQFEKEESAQAAIDKLNG 198
Score = 136 (52.9 bits), Expect = 2.3e-16, Sum P(2) = 2.3e-16
Identities = 27/67 (40%), Positives = 43/67 (64%)
Query: 347 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQN 406
P N+++ ++P+E G+ EL F FG + SA V D++ G S+CFGFV++E +A +
Sbjct: 226 PRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQS-GNSRCFGFVNFECTEAAAS 284
Query: 407 AIAMMNG 413
A+ MNG
Sbjct: 285 AVEKMNG 291
Score = 132 (51.5 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 66/281 (23%), Positives = 108/281 (38%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
++V +PK + E +L F +F ++ +++D++ SR FV + A AV
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGN-SRCFGFVNFECTEAAASAVEKM 289
Query: 77 HN------------KKTLPGASSPLQVKYADGELERLEHK----LFIGMLPKNVSEAEVS 120
+ + L+ K+ + R E L++ L +V + ++
Sbjct: 290 NGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLK 349
Query: 121 ALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180
+FS YG + +++ Q S+G F+ Y E+AL AL +NGK M G PL +
Sbjct: 350 EMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGK--MIGRK-PLYIAL 406
Query: 181 ADTEKEXXXXXXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQ- 239
A +++ P + HP G +P PP + Y Q S Q
Sbjct: 407 AQRKEDRRAHLQALFSQIRAPGPMSGFHHPP-GGPMP---GPPQHMYVGQNGASMVPSQP 462
Query: 240 --YRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPR 278
Y P Q PG P GN + GPR
Sbjct: 463 IGYGFQP-QFMPGMR---PGSGPGNFIVPYPLQRQPQTGPR 499
Score = 128 (50.1 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
Identities = 26/71 (36%), Positives = 43/71 (60%)
Query: 343 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 402
+ E GANL++ ++ D++L F +G V S+KV ++ G+S+ FGFV+Y +P
Sbjct: 325 RFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPE 383
Query: 403 SAQNAIAMMNG 413
A A++ MNG
Sbjct: 384 EALRALSEMNG 394
Score = 121 (47.7 bits), Expect = 0.00037, P = 0.00037
Identities = 27/63 (42%), Positives = 38/63 (60%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N+FI ++ ++ L F +FG +LS KV +D TG SK +GFV +E SAQ AI
Sbjct: 137 NIFIKNLDASIDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAIDK 195
Query: 411 MNG 413
+NG
Sbjct: 196 LNG 198
>DICTYBASE|DDB_G0293558 [details] [associations]
symbol:pabpc1A "polyadenylate binding protein (PABP)"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0293558 GO:GO:0005634 GO:GO:0045335
GenomeReviews:CM000155_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 EMBL:AAFI02000218 eggNOG:COG0724 GO:GO:0008143
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HSSP:P11940 OMA:ITEKNQQ RefSeq:XP_629007.1
ProteinModelPortal:Q54BM2 SMR:Q54BM2 STRING:Q54BM2 PRIDE:Q54BM2
EnsemblProtists:DDB0233359 GeneID:8629291 KEGG:ddi:DDB_G0293558
ProtClustDB:CLSZ2846557 Uniprot:Q54BM2
Length = 565
Score = 156 (60.0 bits), Expect = 4.8e-16, Sum P(2) = 4.8e-16
Identities = 39/150 (26%), Positives = 72/150 (48%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG + ++E L +F + LV + + +D TR S +V + +A++A++
Sbjct: 12 LYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERALDTL 71
Query: 77 HNKKTLPGASSPLQVKYADGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 135
+N + G + + D L + +FI L K + + FS +G I +++
Sbjct: 72 NNTP-IRGKACRIMWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSCKVV 130
Query: 136 RGSQQTSKGCAFLKYETKEQALAALEAING 165
+SKG F+ YET+E A A+ +NG
Sbjct: 131 TDDGNSSKGFGFVHYETQESADKAIAKVNG 160
Score = 123 (48.4 bits), Expect = 5.9e-07, Sum P(2) = 5.9e-07
Identities = 28/63 (44%), Positives = 37/63 (58%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N+FI ++ + + L + F AFG +LS KV D SK FGFV YE+ SA AIA
Sbjct: 99 NVFIKNLDKGIDHKALYDTFSAFGNILSCKVVTDDGNS-SKGFGFVHYETQESADKAIAK 157
Query: 411 MNG 413
+NG
Sbjct: 158 VNG 160
Score = 119 (46.9 bits), Expect = 4.8e-16, Sum P(2) = 4.8e-16
Identities = 26/65 (40%), Positives = 33/65 (50%)
Query: 349 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 408
G NL+I +I + +L F FG + SA V D SK FGFV Y +P A A+
Sbjct: 283 GVNLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAV 342
Query: 409 AMMNG 413
MNG
Sbjct: 343 TEMNG 347
Score = 111 (44.1 bits), Expect = 4.7e-11, Sum P(2) = 4.7e-11
Identities = 38/154 (24%), Positives = 68/154 (44%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
+F+ + K + L F F + ++ D +S+G FV +++ ADKA+ A
Sbjct: 100 VFIKNLDKGIDHKALYDTFSAFGNILSCKVVTDDGN-SSKGFGFVHYETQESADKAI-AK 157
Query: 77 HNKKTLPGAS---SPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + G P + G+ ++ +F L ++V ++ L YG I ++
Sbjct: 158 VNGMMINGQKVFVGPFKSSKERGQPTEVKFTNVFFKNLSEDVGPDQLKELLQQYGEITNI 217
Query: 133 QILRGSQQTSKGCAFLKYETKEQALAALEAINGK 166
I+ + SKG F +E+ E A +E NGK
Sbjct: 218 TIMADDKGKSKGFGFANFESAEAAKNVVENENGK 251
Score = 97 (39.2 bits), Expect = 9.3e-14, Sum P(2) = 9.3e-14
Identities = 19/63 (30%), Positives = 34/63 (53%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N+F ++ ++ G +L Q +G + + + D G SK FGF ++ES +A+N +
Sbjct: 189 NVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDK-GKSKGFGFANFESAEAAKNVVEN 247
Query: 411 MNG 413
NG
Sbjct: 248 ENG 250
Score = 67 (28.6 bits), Expect = 5.9e-07, Sum P(2) = 5.9e-07
Identities = 16/65 (24%), Positives = 33/65 (50%)
Query: 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQ-QTSKGCAFLKYETKEQALAA 159
+ L++G L VSE + +F+ G + ++++ R + + S A++ Y A A
Sbjct: 8 ISSSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERA 67
Query: 160 LEAIN 164
L+ +N
Sbjct: 68 LDTLN 72
>UNIPROTKB|P0CB38 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
Length = 370
Score = 146 (56.5 bits), Expect = 7.3e-16, Sum P(2) = 7.3e-16
Identities = 47/159 (29%), Positives = 74/159 (46%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG + +TE L F V + I +D+ TR S G +V +A KA++
Sbjct: 12 LYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTM 71
Query: 77 HNKKTLPGASSPLQVKYADGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 135
N + G S L D L R +FI L K++ + FS +G I +++
Sbjct: 72 -NFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVM 130
Query: 136 RGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 174
Q SKG AF+ ++ + A A+E +NGK ++G V
Sbjct: 131 -SDDQGSKGYAFVHFQNQSAADRAIEEMNGK-LLKGCKV 167
Score = 122 (48.0 bits), Expect = 7.3e-16, Sum P(2) = 7.3e-16
Identities = 25/63 (39%), Positives = 40/63 (63%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N++I + + D+ L + F +G+ LS KV D ++G SK FGFVS++S +A+ A+
Sbjct: 191 NVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDSHEAAKKAVEE 249
Query: 411 MNG 413
MNG
Sbjct: 250 MNG 252
Score = 115 (45.5 bits), Expect = 3.9e-15, Sum P(2) = 3.9e-15
Identities = 25/71 (35%), Positives = 38/71 (53%)
Query: 343 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 402
+I G G L+I ++ D++L N F +FG + KV ++ G SK FG + + SP
Sbjct: 286 RIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEE--GQSKGFGLICFSSPE 343
Query: 403 SAQNAIAMMNG 413
A A+ MNG
Sbjct: 344 DATKAMTEMNG 354
Score = 113 (44.8 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 40/157 (25%), Positives = 72/157 (45%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
+F+ + K + L F F + ++ D + S+G FV ++ AD+A+
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDD--QGSKGYAFVHFQNQSAADRAIEEM 157
Query: 77 HNKKTLPGASSPL-QVKYA-DGELE-RLEHKLFIGMLPKN----VSEAEVSALFSIYGTI 129
N K L G + + K D E E R + F + KN + + + +FS YG
Sbjct: 158 -NGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKT 216
Query: 130 KDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 166
++++ S SKG F+ +++ E A A+E +NG+
Sbjct: 217 LSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGR 253
>UNIPROTKB|J3KTH5 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126 TIGRFAMs:TIGR01628
EMBL:AC015631 UniGene:Hs.49889 HGNC:HGNC:31955
RefSeq:NP_001108206.2 ProteinModelPortal:J3KTH5
Ensembl:ENST00000529122 GeneID:132430 KEGG:hsa:132430 CTD:132430
Uniprot:J3KTH5
Length = 428
Score = 146 (56.5 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
Identities = 47/159 (29%), Positives = 74/159 (46%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG + +TE L F V + I +D+ TR S G +V +A KA++
Sbjct: 70 LYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTM 129
Query: 77 HNKKTLPGASSPLQVKYADGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 135
N + G S L D L R +FI L K++ + FS +G I +++
Sbjct: 130 -NFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVM 188
Query: 136 RGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 174
Q SKG AF+ ++ + A A+E +NGK ++G V
Sbjct: 189 -SDDQGSKGYAFVHFQNQSAADRAIEEMNGK-LLKGCKV 225
Score = 122 (48.0 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
Identities = 25/63 (39%), Positives = 40/63 (63%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N++I + + D+ L + F +G+ LS KV D ++G SK FGFVS++S +A+ A+
Sbjct: 249 NVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDSHEAAKKAVEE 307
Query: 411 MNG 413
MNG
Sbjct: 308 MNG 310
Score = 115 (45.5 bits), Expect = 6.9e-15, Sum P(2) = 6.9e-15
Identities = 25/71 (35%), Positives = 38/71 (53%)
Query: 343 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 402
+I G G L+I ++ D++L N F +FG + KV ++ G SK FG + + SP
Sbjct: 344 RIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEE--GQSKGFGLICFSSPE 401
Query: 403 SAQNAIAMMNG 413
A A+ MNG
Sbjct: 402 DATKAMTEMNG 412
Score = 113 (44.8 bits), Expect = 3.7e-11, Sum P(2) = 3.7e-11
Identities = 40/157 (25%), Positives = 72/157 (45%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
+F+ + K + L F F + ++ D + S+G FV ++ AD+A+
Sbjct: 158 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDD--QGSKGYAFVHFQNQSAADRAIEEM 215
Query: 77 HNKKTLPGASSPL-QVKYA-DGELE-RLEHKLFIGMLPKN----VSEAEVSALFSIYGTI 129
N K L G + + K D E E R + F + KN + + + +FS YG
Sbjct: 216 -NGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKT 274
Query: 130 KDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 166
++++ S SKG F+ +++ E A A+E +NG+
Sbjct: 275 LSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGR 311
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 147 (56.8 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
Identities = 43/152 (28%), Positives = 76/152 (50%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG + +TEA L F V + + +D TR S G +V +A++A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 77 HNKKTLPGASSPLQVKYA--DGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
N + G P+++ ++ D L + +FI L K++ + FS +G I +
Sbjct: 73 -NFDVIKG--KPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAING 165
++ + SKG AF+ +ET+E A A+E +NG
Sbjct: 130 VVC-DENGSKGYAFVHFETQEAANKAIEKMNG 160
Score = 131 (51.2 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 40/164 (24%), Positives = 76/164 (46%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
+F+ + K + L F F + ++ D+ S+G FV +++ A+KA+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYAFVHFETQEAANKAIEKM 158
Query: 77 H-----NKKTLPGASSPLQVKYAD-GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
+ ++K G + + A+ G + ++I + V + + LFS +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTL 218
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 174
++++R SKG F+ YE E A A+E +NGK +M G S+
Sbjct: 219 SVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGK-EMSGKSI 261
Score = 126 (49.4 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
Identities = 28/63 (44%), Positives = 36/63 (57%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N++I + +E D+ L F FG+ LS KV D +G SK FGFVSYE A A+
Sbjct: 192 NVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRD-CSGKSKGFGFVSYEKHEDANKAVEE 250
Query: 411 MNG 413
MNG
Sbjct: 251 MNG 253
Score = 125 (49.1 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 27/65 (41%), Positives = 37/65 (56%)
Query: 349 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 408
G NL+I ++ D++L F FG + SAKV ++ G SK FGFV + SP A A+
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAV 350
Query: 409 AMMNG 413
MNG
Sbjct: 351 TEMNG 355
Score = 107 (42.7 bits), Expect = 0.00058, Sum P(2) = 0.00058
Identities = 44/187 (23%), Positives = 88/187 (47%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
+++ + + + L +F +F V +++D + + S+G FV ++A+KAV
Sbjct: 193 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGK-SKGFGFVSYEKHEDANKAVEEM 251
Query: 77 HNKKTLPGAS-------------SPLQVKYADGELERLEH----KLFIGMLPKNVSEAEV 119
N K + G S + L+ K+ + ER+ L+I L + + ++
Sbjct: 252 -NGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 310
Query: 120 SALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179
FS +G+I +++ + SKG F+ + + E+A A+ +NG+ + GS PL V
Sbjct: 311 RKEFSPFGSITSAKVMLEDGR-SKGFGFVCFSSPEEATKAVTEMNGR--IVGSK-PLYVA 366
Query: 180 WADTEKE 186
A ++E
Sbjct: 367 LAQRKEE 373
Score = 56 (24.8 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 32/118 (27%), Positives = 49/118 (41%)
Query: 214 GALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSS 273
G P G+ + + SG +++ L P N P G+ P Q + A P+L+
Sbjct: 440 GGRPQGFQGMPSAL--RQSGPRPALRH-LAPTGNAPASRGL-PTTAQRVGVPTAVPNLAP 495
Query: 274 NM-----GPRNYAMPPSGF---VGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSP 323
PR A+ P + V S +PA+ LQ P P + G PL S + +P
Sbjct: 496 RATVAAAAPR--AVAPYKYASNVRSPHPAIQPLQAPQPAVH-VQGQEPLTASMLAAAP 550
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 147 (56.8 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
Identities = 43/152 (28%), Positives = 76/152 (50%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG + +TEA L F V + + +D TR S G +V +A++A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 77 HNKKTLPGASSPLQVKYA--DGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
N + G P+++ ++ D L + +FI L K++ + FS +G I +
Sbjct: 73 -NFDVIKG--KPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAING 165
++ + SKG AF+ +ET+E A A+E +NG
Sbjct: 130 VVC-DENGSKGYAFVHFETQEAANKAIEKMNG 160
Score = 131 (51.2 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 40/164 (24%), Positives = 76/164 (46%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
+F+ + K + L F F + ++ D+ S+G FV +++ A+KA+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYAFVHFETQEAANKAIEKM 158
Query: 77 H-----NKKTLPGASSPLQVKYAD-GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
+ ++K G + + A+ G + ++I + V + + LFS +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTL 218
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 174
++++R SKG F+ YE E A A+E +NGK +M G S+
Sbjct: 219 SVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGK-EMSGKSI 261
Score = 126 (49.4 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
Identities = 28/63 (44%), Positives = 36/63 (57%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N++I + +E D+ L F FG+ LS KV D +G SK FGFVSYE A A+
Sbjct: 192 NVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRD-CSGKSKGFGFVSYEKHEDANKAVEE 250
Query: 411 MNG 413
MNG
Sbjct: 251 MNG 253
Score = 125 (49.1 bits), Expect = 1.9e-15, Sum P(2) = 1.9e-15
Identities = 27/65 (41%), Positives = 37/65 (56%)
Query: 349 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 408
G NL+I ++ D++L F FG + SAKV ++ G SK FGFV + SP A A+
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAV 350
Query: 409 AMMNG 413
MNG
Sbjct: 351 TEMNG 355
Score = 47 (21.6 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 24/91 (26%), Positives = 34/91 (37%)
Query: 233 GSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGY 292
G G Q L G +P + + A+P + P YA V S +
Sbjct: 497 GGAGAAQQGLTDSCQSGGVPTAVPNLAPRATVAAAAPRA---VAPYKYASN----VRSPH 549
Query: 293 PAVPGLQYPMPYPGGMLGHRPLNNSPGSVSP 323
PA+ LQ P P + G PL S + +P
Sbjct: 550 PAIQPLQAPQPAVH-VQGQEPLTASMLAAAP 579
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 146 (56.5 bits), Expect = 2.0e-15, Sum P(2) = 2.0e-15
Identities = 43/152 (28%), Positives = 76/152 (50%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG + +TEA L F V + + +D TR S G +V +A++A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 77 HNKKTLPGASSPLQVKYA--DGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
N + G P+++ ++ D L + +FI L K++ + FS +G I +
Sbjct: 73 -NFDVIKG--KPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAING 165
++ + SKG AF+ +ET+E A A+E +NG
Sbjct: 130 VVC-DENGSKGYAFVHFETQEAADKAIEKMNG 160
Score = 127 (49.8 bits), Expect = 2.7e-13, Sum P(2) = 2.7e-13
Identities = 38/156 (24%), Positives = 71/156 (45%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
+F+ + K + L F F + ++ D+ S+G FV +++ ADKA+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYAFVHFETQEAADKAIEKM 158
Query: 77 H-----NKKTLPGASSPLQVKYAD-GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
+ ++K G + + A+ G + ++I + V + + LFS +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 166
++++R SKG F+ YE E A A+E +NGK
Sbjct: 219 SVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGK 254
Score = 125 (49.1 bits), Expect = 2.0e-15, Sum P(2) = 2.0e-15
Identities = 27/65 (41%), Positives = 37/65 (56%)
Query: 349 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 408
G NL+I ++ D++L F FG + SAKV ++ G SK FGFV + SP A A+
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAV 350
Query: 409 AMMNG 413
MNG
Sbjct: 351 TEMNG 355
Score = 124 (48.7 bits), Expect = 2.6e-15, Sum P(2) = 2.6e-15
Identities = 28/63 (44%), Positives = 35/63 (55%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N++I + +E D+ L F FG+ LS KV D G SK FGFVSYE A A+
Sbjct: 192 NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEE 250
Query: 411 MNG 413
MNG
Sbjct: 251 MNG 253
Score = 48 (22.0 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 21/70 (30%), Positives = 29/70 (41%)
Query: 255 IPPVNQGNAMRGASPDLSSN-MGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRP 313
+P Q A R A + + P YA V S +PA+ LQ P P + G P
Sbjct: 470 VPTAVQNLAPRAAVAAAAPRAVAPYKYASS----VRSPHPAIQPLQAPQPAVH-VQGQEP 524
Query: 314 LNNSPGSVSP 323
L S + +P
Sbjct: 525 LTASMLAAAP 534
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 146 (56.5 bits), Expect = 2.2e-15, Sum P(2) = 2.2e-15
Identities = 43/152 (28%), Positives = 76/152 (50%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG + +TEA L F V + + +D TR S G +V +A++A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 77 HNKKTLPGASSPLQVKYA--DGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
N + G P+++ ++ D L + +FI L K++ + FS +G I +
Sbjct: 73 -NFDVIKG--KPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAING 165
++ + SKG AF+ +ET+E A A+E +NG
Sbjct: 130 VVC-DENGSKGYAFVHFETQEAADKAIEKMNG 160
Score = 127 (49.8 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 38/156 (24%), Positives = 71/156 (45%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
+F+ + K + L F F + ++ D+ S+G FV +++ ADKA+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYAFVHFETQEAADKAIEKM 158
Query: 77 H-----NKKTLPGASSPLQVKYAD-GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
+ ++K G + + A+ G + ++I + V + + LFS +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTL 218
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 166
++++R SKG F+ YE E A A+E +NGK
Sbjct: 219 SVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGK 254
Score = 125 (49.1 bits), Expect = 2.2e-15, Sum P(2) = 2.2e-15
Identities = 28/63 (44%), Positives = 36/63 (57%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N++I + +E D+ L F FG+ LS KV D + G SK FGFVSYE A A+
Sbjct: 192 NVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHEDANKAVEE 250
Query: 411 MNG 413
MNG
Sbjct: 251 MNG 253
Score = 125 (49.1 bits), Expect = 2.2e-15, Sum P(2) = 2.2e-15
Identities = 27/65 (41%), Positives = 37/65 (56%)
Query: 349 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 408
G NL+I ++ D++L F FG + SAKV ++ G SK FGFV + SP A A+
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAV 350
Query: 409 AMMNG 413
MNG
Sbjct: 351 TEMNG 355
Score = 54 (24.1 bits), Expect = 4.8e-08, Sum P(2) = 4.8e-08
Identities = 31/116 (26%), Positives = 49/116 (42%)
Query: 214 GALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQ--G--NAMRGASP 269
G P G+ + + SG +++ L P N P G+ P Q G A++ +P
Sbjct: 440 GGRPQGFQGMPSAI--RQSGPRPALRH-LAPTGNAPASRGL-PTTAQRVGVPTAVQNLAP 495
Query: 270 DLS-SNMGPRNYA-MPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSP 323
+ + PR A + V S +PA+ LQ P P + G PL S + +P
Sbjct: 496 RAAVATAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVH-VQGQEPLTASMLAAAP 550
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 146 (56.5 bits), Expect = 2.2e-15, Sum P(2) = 2.2e-15
Identities = 43/152 (28%), Positives = 76/152 (50%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG + +TEA L F V + + +D TR S G +V +A++A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 77 HNKKTLPGASSPLQVKYA--DGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
N + G P+++ ++ D L + +FI L K++ + FS +G I +
Sbjct: 73 -NFDVIKG--KPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAING 165
++ + SKG AF+ +ET+E A A+E +NG
Sbjct: 130 VVC-DENGSKGYAFVHFETQEAADKAIEKMNG 160
Score = 127 (49.8 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 38/156 (24%), Positives = 71/156 (45%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
+F+ + K + L F F + ++ D+ S+G FV +++ ADKA+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYAFVHFETQEAADKAIEKM 158
Query: 77 H-----NKKTLPGASSPLQVKYAD-GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
+ ++K G + + A+ G + ++I + V + + LFS +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 166
++++R SKG F+ YE E A A+E +NGK
Sbjct: 219 SVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGK 254
Score = 125 (49.1 bits), Expect = 2.2e-15, Sum P(2) = 2.2e-15
Identities = 28/63 (44%), Positives = 36/63 (57%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N++I + +E D+ L F FG+ LS KV D + G SK FGFVSYE A A+
Sbjct: 192 NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHEDANKAVEE 250
Query: 411 MNG 413
MNG
Sbjct: 251 MNG 253
Score = 125 (49.1 bits), Expect = 2.2e-15, Sum P(2) = 2.2e-15
Identities = 27/65 (41%), Positives = 37/65 (56%)
Query: 349 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 408
G NL+I ++ D++L F FG + SAKV ++ G SK FGFV + SP A A+
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAV 350
Query: 409 AMMNG 413
MNG
Sbjct: 351 TEMNG 355
Score = 50 (22.7 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 31/116 (26%), Positives = 49/116 (42%)
Query: 214 GALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQ--G--NAMRGASP 269
G P G+ + + SG +++ L P N P G+ P Q G A++ +P
Sbjct: 440 GGRPQGFQGMPSAI--RQSGPRPALRH-LAPTGNAPASRGL-PTTAQRVGVPTAVQTLAP 495
Query: 270 DLS-SNMGPRNYA-MPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSP 323
+ + PR A + V S +PA+ LQ P P + G PL S + +P
Sbjct: 496 RAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVH-VQGQEPLTASMLAAAP 550
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 146 (56.5 bits), Expect = 2.3e-15, Sum P(2) = 2.3e-15
Identities = 43/152 (28%), Positives = 76/152 (50%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG + +TEA L F V + + +D TR S G +V +A++A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 77 HNKKTLPGASSPLQVKYA--DGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
N + G P+++ ++ D L + +FI L K++ + FS +G I +
Sbjct: 73 -NFDVIKG--KPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAING 165
++ + SKG AF+ +ET+E A A+E +NG
Sbjct: 130 VVC-DENGSKGYAFVHFETQEAADKAIEKMNG 160
Score = 127 (49.8 bits), Expect = 3.1e-13, Sum P(2) = 3.1e-13
Identities = 38/156 (24%), Positives = 71/156 (45%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
+F+ + K + L F F + ++ D+ S+G FV +++ ADKA+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYAFVHFETQEAADKAIEKM 158
Query: 77 H-----NKKTLPGASSPLQVKYAD-GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
+ ++K G + + A+ G + ++I + V + + LFS +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 166
++++R SKG F+ YE E A A+E +NGK
Sbjct: 219 SVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGK 254
Score = 125 (49.1 bits), Expect = 2.3e-15, Sum P(2) = 2.3e-15
Identities = 27/65 (41%), Positives = 37/65 (56%)
Query: 349 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 408
G NL+I ++ D++L F FG + SAKV ++ G SK FGFV + SP A A+
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAV 350
Query: 409 AMMNG 413
MNG
Sbjct: 351 TEMNG 355
Score = 124 (48.7 bits), Expect = 2.9e-15, Sum P(2) = 2.9e-15
Identities = 28/63 (44%), Positives = 35/63 (55%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N++I + +E D+ L F FG+ LS KV D G SK FGFVSYE A A+
Sbjct: 192 NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEE 250
Query: 411 MNG 413
MNG
Sbjct: 251 MNG 253
Score = 50 (22.7 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 22/72 (30%), Positives = 30/72 (41%)
Query: 253 GIIPPVNQGNAMRGASPDLSSN-MGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGH 311
G +P Q A R A + + P YA V S +PA+ LQ P P + G
Sbjct: 497 GGVPTAVQNLAPRAAVAAAAPRAVAPYKYASS----VRSPHPAIQPLQAPQPAVH-VQGQ 551
Query: 312 RPLNNSPGSVSP 323
PL S + +P
Sbjct: 552 EPLTASMLAAAP 563
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 146 (56.5 bits), Expect = 2.3e-15, Sum P(2) = 2.3e-15
Identities = 43/152 (28%), Positives = 76/152 (50%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG + +TEA L F V + + +D TR S G +V +A++A++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 77 HNKKTLPGASSPLQVKYA--DGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
N + G P+++ ++ D L + +FI L K++ + FS +G I +
Sbjct: 73 -NFDVIKG--KPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAING 165
++ + SKG AF+ +ET+E A A+E +NG
Sbjct: 130 VVC-DENGSKGYAFVHFETQEAADKAIEKMNG 160
Score = 127 (49.8 bits), Expect = 3.1e-13, Sum P(2) = 3.1e-13
Identities = 38/156 (24%), Positives = 71/156 (45%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
+F+ + K + L F F + ++ D+ S+G FV +++ ADKA+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYAFVHFETQEAADKAIEKM 158
Query: 77 H-----NKKTLPGASSPLQVKYAD-GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
+ ++K G + + A+ G + ++I + V + + LFS +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTL 218
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 166
++++R SKG F+ YE E A A+E +NGK
Sbjct: 219 SVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGK 254
Score = 125 (49.1 bits), Expect = 2.3e-15, Sum P(2) = 2.3e-15
Identities = 28/63 (44%), Positives = 36/63 (57%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N++I + +E D+ L F FG+ LS KV D + G SK FGFVSYE A A+
Sbjct: 192 NVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHEDANKAVEE 250
Query: 411 MNG 413
MNG
Sbjct: 251 MNG 253
Score = 125 (49.1 bits), Expect = 2.3e-15, Sum P(2) = 2.3e-15
Identities = 27/65 (41%), Positives = 37/65 (56%)
Query: 349 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 408
G NL+I ++ D++L F FG + SAKV ++ G SK FGFV + SP A A+
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAV 350
Query: 409 AMMNG 413
MNG
Sbjct: 351 TEMNG 355
Score = 49 (22.3 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 21/72 (29%), Positives = 32/72 (44%)
Query: 253 GIIPPVNQGNAMRGASPDLSSNMGPRNYA-MPPSGFVGSGYPAVPGLQYPMPYPGGMLGH 311
G +P Q A R A +++ PR A + + S +PA+ LQ P P + G
Sbjct: 497 GGVPTAVQNLAPRAA---VAAAAAPRAVAPYKYASSIRSPHPAIQPLQAPQPAVH-VQGQ 552
Query: 312 RPLNNSPGSVSP 323
PL S + +P
Sbjct: 553 EPLTASMLAAAP 564
>UNIPROTKB|Q4VY17 [details] [associations]
symbol:PABPC1L "EPAB" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AL008725 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HOVERGEN:HBG002295 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
EMBL:AL109839 UniGene:Hs.641481 HGNC:HGNC:15797 EMBL:EU190483
IPI:IPI00306870 SMR:Q4VY17 STRING:Q4VY17 Ensembl:ENST00000217074
Ensembl:ENST00000537323 Uniprot:Q4VY17
Length = 330
Score = 136 (52.9 bits), Expect = 2.5e-15, Sum P(2) = 2.5e-15
Identities = 26/63 (41%), Positives = 41/63 (65%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N+++ ++P + +Q L + F FG++LS KV D + G S+CFGFV++E AQ A+
Sbjct: 192 NIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNS-GHSRCFGFVNFEKHEEAQKAVVH 250
Query: 411 MNG 413
MNG
Sbjct: 251 MNG 253
Score = 126 (49.4 bits), Expect = 2.5e-15, Sum P(2) = 2.5e-15
Identities = 38/152 (25%), Positives = 72/152 (47%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG + +TEA L F + + + +D TR S G ++ +A++A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 77 HNKKTLPGASSPLQVKYA--DGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
N + L G P+++ ++ D L + +FI L ++ + FS +G I +
Sbjct: 73 -NFEMLKG--QPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCK 129
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAING 165
+ + S+G F+ +ET E A A+ +NG
Sbjct: 130 VAC-DEHGSRGFGFVHFETHEAAQQAINTMNG 160
Score = 110 (43.8 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
Identities = 36/156 (23%), Positives = 71/156 (45%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
+F+ + + L F F + + D+ SRG FV + + A +A+N
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDE--HGSRGFGFVHFETHEAAQQAINTM 158
Query: 77 H-----NKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIK 130
+ ++K G + + A+ LE +++ LP +V E + LFS +G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKML 218
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 166
++++R + S+ F+ +E E+A A+ +NGK
Sbjct: 219 SVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGK 254
Score = 55 (24.4 bits), Expect = 8.0e-07, Sum P(2) = 8.0e-07
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 349 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAK 380
G NL++ ++ D +L F +G + SAK
Sbjct: 293 GVNLYVKNLDDSIDDDKLRKEFSPYGVITSAK 324
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 159 (61.0 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 88/356 (24%), Positives = 142/356 (39%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
++V + + T+ +L F ++ + +++D + SR FV + ++A +AV A
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGK-SRCFGFVNFENPEDAARAVEAL 285
Query: 77 HNKKT-----LPGASSP-------LQVKYADGELE---RLEH-KLFIGMLPKNVSEAEVS 120
+ KK G + L +Y G + + + L++ L V++ ++
Sbjct: 286 NGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLR 345
Query: 121 ALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180
LF+ +GTI +++R TSKG F+ + +A L +NGK M G PL V
Sbjct: 346 ELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGK--MVGGK-PLYVAL 402
Query: 181 ADTEKEXXXXXXXXXXXXXNN-LPNADSQHPSLFGALP-------MGYAPP-----YNGY 227
A ++E +P + P G P G PP G+
Sbjct: 403 AQRKEERRAKLQAQFSQMRPAFIPGVGPRMPIFTGGAPGLGQQIFYGQGPPPIIPHQPGF 462
Query: 228 GYQASGSYGLMQ-YRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMP--- 283
GYQ G+ + PM QPG G P G G P + P Y P
Sbjct: 463 GYQPQLVPGMRPAFFGGPMM-QPGQQGPRP----GGRRSGDGPMRHQHQQPMPYMQPQMM 517
Query: 284 PSGFVGSGYPAVPGLQYPM-PYPGGM------LGHRPLNN--SPGSVSPAVANSNP 330
P G G YP+ G P P PGGM + P + S G ++ ++AN+ P
Sbjct: 518 PRGR-GYRYPS-GGRNMPDGPMPGGMVPVAYDMNVMPYSQPMSAGQLATSLANATP 571
Score = 153 (58.9 bits), Expect = 2.7e-15, Sum P(2) = 2.7e-15
Identities = 43/151 (28%), Positives = 71/151 (47%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG + ++T++QL F E V V + +D T S G +V + +A+KA+
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107
Query: 77 HNKKTLPGASSPLQVKYADGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 135
N L G + D R LF+ L K+V + FS GTI ++
Sbjct: 108 -NYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVA 166
Query: 136 RGSQQTSKGCAFLKYETKEQALAALEAINGK 166
S+G F++++T++ A A+E +NGK
Sbjct: 167 TDHMGQSRGYGFVQFDTEDSAKNAIEKLNGK 197
Score = 117 (46.2 bits), Expect = 2.7e-15, Sum P(2) = 2.7e-15
Identities = 23/63 (36%), Positives = 37/63 (58%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N+++ ++ + D EL F +G + SA V D G S+CFGFV++E+P A A+
Sbjct: 226 NVYVKNLSEATTDDELKTTFGQYGSISSAVVMRD-GDGKSRCFGFVNFENPEDAARAVEA 284
Query: 411 MNG 413
+NG
Sbjct: 285 LNG 287
Score = 101 (40.6 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 22/65 (33%), Positives = 35/65 (53%)
Query: 349 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 408
G NL++ ++ D++L F FG + S KV D + G SK GFV++ + + A +
Sbjct: 327 GLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPS-GTSKGSGFVAFSAASEASRVL 385
Query: 409 AMMNG 413
MNG
Sbjct: 386 NEMNG 390
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 157 (60.3 bits), Expect = 2.8e-15, Sum P(2) = 2.8e-15
Identities = 43/152 (28%), Positives = 76/152 (50%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG + ++T++QL F + V V + +D TR S G +V + Q+A +A+
Sbjct: 38 LYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQEL 97
Query: 77 HNKKTLPGASSPLQVKYA--DGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
+ +P P++V Y+ D + R +FI L +++ + FS +G I +
Sbjct: 98 NY---IPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCK 154
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAING 165
+ S SKG F++Y +E A A+E +NG
Sbjct: 155 VAVDSSGQSKGYGFVQYANEESAQKAIEKLNG 186
Score = 145 (56.1 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 75/346 (21%), Positives = 139/346 (40%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
++V + + T+ L F E+ + ++KD + S+G FV + +A +AV +
Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGK-SKGFGFVNFENADDAARAVESL 275
Query: 77 H-----NKKTLPGAS-------SPLQVKYADGELERLEH----KLFIGMLPKNVSEAEVS 120
+ +K+ G + + L+V+Y E + L++ L ++S+ ++
Sbjct: 276 NGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLK 335
Query: 121 ALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180
+FS +GT+ +++R TSKG F+ + T E+A A+ ++GK +E + + +
Sbjct: 336 EIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGK-MIESKPLYVAIAQ 394
Query: 181 ADTEKEXXXXXXXXXXXXXNNLPNADSQHP------------SLFGALPMGYAPPYNGYG 228
++ P+ + P +G P PP GYG
Sbjct: 395 RKEDRRVRLQAQFSQVRPVAMQPSVGPRMPVYPPGGPGIGQQMFYGQAPPAMIPPQPGYG 454
Query: 229 YQASGSYGLMQYRLPPMQNQPGFH-GIIPPVNQ--GNAMRGASPDLSSNMGPR-NYAMPP 284
YQ G+ P P F ++ P Q G R S P M P
Sbjct: 455 YQQQLVPGMR----PGGGPVPSFFMPMVQPQQQRPGGGRRPGGIQHSQQQNPMMQQQMHP 510
Query: 285 SGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNP 330
G + YP G +P P M + PL + G+++ ++N+ P
Sbjct: 511 RGRMFR-YPQGRGGSGDVP-PYDMGNNMPL--TIGALASNLSNATP 552
Score = 126 (49.4 bits), Expect = 9.7e-05, P = 9.7e-05
Identities = 28/66 (42%), Positives = 42/66 (63%)
Query: 349 GA-NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNA 407
GA N+FI ++ + + L + F +FG ++S KV VD ++G SK +GFV Y + SAQ A
Sbjct: 122 GAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVD-SSGQSKGYGFVQYANEESAQKA 180
Query: 408 IAMMNG 413
I +NG
Sbjct: 181 IEKLNG 186
Score = 112 (44.5 bits), Expect = 2.8e-15, Sum P(2) = 2.8e-15
Identities = 23/63 (36%), Positives = 38/63 (60%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N+++ ++ + D +L NAF +G++ SA V D G SK FGFV++E+ A A+
Sbjct: 216 NVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKD-GEGKSKGFGFVNFENADDAARAVES 274
Query: 411 MNG 413
+NG
Sbjct: 275 LNG 277
Score = 106 (42.4 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 22/64 (34%), Positives = 37/64 (57%)
Query: 350 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 409
+NL++ ++ D++L F FG V S+KV D G SK GFV++ +P A A++
Sbjct: 318 SNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDP-NGTSKGSGFVAFATPEEATEAMS 376
Query: 410 MMNG 413
++G
Sbjct: 377 QLSG 380
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 147 (56.8 bits), Expect = 3.6e-15, Sum P(2) = 3.6e-15
Identities = 40/152 (26%), Positives = 78/152 (51%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG + +TEA L F + + + +D+TTR S G V ++A++A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALDTM 72
Query: 77 HNKKTLPGASSPLQVKYA--DGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
N + G P+++ ++ D L + +F+ L +++ + FS +G I +
Sbjct: 73 -NFDVIKG--KPVRIMWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFGNILSCK 129
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAING 165
++ + SKG F+ +ET+E+A A+E +NG
Sbjct: 130 VVC-DENGSKGYGFVHFETQEEAERAIEKMNG 160
Score = 122 (48.0 bits), Expect = 3.6e-15, Sum P(2) = 3.6e-15
Identities = 26/63 (41%), Positives = 39/63 (61%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N++I ++ ++ D+ L + F FG LS KV D++ G SK FGFVS+E A+ A+
Sbjct: 192 NVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDES-GKSKGFGFVSFERHEDARKAVDE 250
Query: 411 MNG 413
MNG
Sbjct: 251 MNG 253
Score = 119 (46.9 bits), Expect = 7.4e-15, Sum P(2) = 7.4e-15
Identities = 26/65 (40%), Positives = 36/65 (55%)
Query: 349 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 408
G NL++ ++ D+ L F FG + SAKV ++ G SK FGFV + SP A A+
Sbjct: 303 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVTMEG--GRSKGFGFVCFSSPEEATKAV 360
Query: 409 AMMNG 413
MNG
Sbjct: 361 TEMNG 365
Score = 113 (44.8 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 35/164 (21%), Positives = 76/164 (46%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
+FV + + + L F F + ++ D+ S+G FV +++EA++A+
Sbjct: 101 IFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDEN--GSKGYGFVHFETQEEAERAIEKM 158
Query: 77 H-----NKKTLPGASSPLQVKYAD-GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
+ ++K G + + A+ G + ++I L +++ + + LFS +G
Sbjct: 159 NGMFLNDRKVFVGRFKSRRDRQAELGARAKEFTNVYIKNLGEDMDDERLQDLFSRFGPAL 218
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 174
++++ SKG F+ +E E A A++ +NGK + G +
Sbjct: 219 SVKVMTDESGKSKGFGFVSFERHEDARKAVDEMNGKD-LNGKQI 261
Score = 45 (20.9 bits), Expect = 3.3e-07, Sum P(2) = 3.3e-07
Identities = 29/149 (19%), Positives = 51/149 (34%)
Query: 201 NLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQ 260
+L N Q + A+P P N + A G G P QN+ ++ Q
Sbjct: 387 HLSNQYMQRMASTSAVPN---PGINPF-QPAQGLSGYFMTATAPTQNRGTYYAPNQTTQQ 442
Query: 261 GNAMRGASPDLSSN-MGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPG 319
G + RG++ ++ + A+ PS + S + P + + + + P
Sbjct: 443 GPSARGSAQGTRAHPFQNMSSAIHPSNTMPSFSTSGPTSSQAVRHRTASTSTQMMGPHPA 502
Query: 320 SVSPAVANSNPXXXXXXXXXXXXQIEGPP 348
+ S A A P + PP
Sbjct: 503 AASTAAA---PAARTVTQYKYTAGVRNPP 528
>ZFIN|ZDB-GENE-050308-1 [details] [associations]
symbol:pabpc1b "poly A binding protein, cytoplasmic 1
b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
Length = 634
Score = 144 (55.7 bits), Expect = 3.7e-15, Sum P(2) = 3.7e-15
Identities = 40/150 (26%), Positives = 71/150 (47%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG + + +TEA L F + + + +D TR S G +V +A++A++
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 77 HNKKTLPGASSPLQVKYADGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 135
N + G + D L + +FI L K++ + FS +G I +++
Sbjct: 73 -NFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 136 RGSQQTSKGCAFLKYETKEQALAALEAING 165
+ SKG F+ +ET+E A A+E +NG
Sbjct: 132 C-DENGSKGYGFVHFETQEAAERAIEKMNG 160
Score = 125 (49.1 bits), Expect = 3.7e-15, Sum P(2) = 3.7e-15
Identities = 27/65 (41%), Positives = 36/65 (55%)
Query: 349 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 408
G NL++ ++ D+ L F FG + SAKV +D G SK FGFV + SP A A+
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMDG--GRSKGFGFVCFSSPEEATKAV 350
Query: 409 AMMNG 413
MNG
Sbjct: 351 TEMNG 355
Score = 117 (46.2 bits), Expect = 0.00096, P = 0.00096
Identities = 26/63 (41%), Positives = 40/63 (63%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N+FI ++ + ++ L + F AFG +LS KV D+ G SK +GFV +E+ +A+ AI
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYGFVHFETQEAAERAIEK 157
Query: 411 MNG 413
MNG
Sbjct: 158 MNG 160
Score = 112 (44.5 bits), Expect = 8.2e-14, Sum P(2) = 8.2e-14
Identities = 23/63 (36%), Positives = 37/63 (58%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N++I + ++ D +L + F +G +S +V D+ G S+ FGFVS+E AQ A+
Sbjct: 192 NVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDE-NGKSRGFGFVSFERHEDAQRAVDE 250
Query: 411 MNG 413
MNG
Sbjct: 251 MNG 253
Score = 110 (43.8 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
Identities = 33/164 (20%), Positives = 76/164 (46%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
+F+ + K + L F F + ++ D+ S+G FV +++ A++A+
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYGFVHFETQEAAERAIEKM 158
Query: 77 H-----NKKTLPGASSPLQVKYAD-GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
+ ++K G + + A+ G + ++I +++ + ++ +FS YG
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDDKLKDIFSKYGNAM 218
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 174
++++ S+G F+ +E E A A++ +NGK +M G +
Sbjct: 219 SIRVMTDENGKSRGFGFVSFERHEDAQRAVDEMNGK-EMNGKLI 261
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 141 (54.7 bits), Expect = 5.0e-15, Sum P(2) = 5.0e-15
Identities = 42/152 (27%), Positives = 76/152 (50%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG + +TEA L F V + + +D TR S G +V +A++A++
Sbjct: 14 LYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 73
Query: 77 HNKKTLPGASSPLQVKYA--DGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
N + G P+++ ++ D L + +FI L K++ + FS +G I +
Sbjct: 74 -NFDVVKG--KPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCK 130
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAING 165
++ + SKG AF+ +ET++ A A+E +NG
Sbjct: 131 VVC-DENGSKGYAFVHFETQDAADRAIEKMNG 161
Score = 132 (51.5 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 84/340 (24%), Positives = 136/340 (40%)
Query: 26 MTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACH----NKKT 81
M + +L +F ++ V ++ D T + SRG FV ++A+KAV + N KT
Sbjct: 203 MDDQRLKELFDKYGKTLSVKVMTDPTGK-SRGFGFVSYEKHEDANKAVEEMNGTELNGKT 261
Query: 82 L-PGAS-------SPLQVKYADGELERLEH----KLFIGMLPKNVSEAEVSALFSIYGTI 129
+ G + + L+ K+ + ER+ L+I L + + ++ FS +G+I
Sbjct: 262 VFVGRAQKKMERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSI 321
Query: 130 KDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKEXXX 189
+++ + SKG F+ + + E+A A+ +NG+ + GS PL V A ++E
Sbjct: 322 TSAKVML-EEGRSKGFGFVCFSSPEEATKAVTEMNGR--IVGSK-PLYVALAQRKEERKA 377
Query: 190 XXXXXXX---XXXNNLP-NADSQHPSLFGALPMGYAPP-YNGYGYQASGSYGLMQYRLPP 244
+P NA G M P N Y A L Q R P
Sbjct: 378 HLTNQYMQRIAGMRAMPANAIINQFQPAGGYFMPAVPQAQNRTTYYAPNQ--LTQMRPNP 435
Query: 245 M------QNQPGFHGIIPPVNQGNA---MRGASPDLSSNMGPRNYAMPPSGFVGSGYPAV 295
+ Q GF G+ + Q +R +P+ +SN GPR G+G P
Sbjct: 436 RWQQQGGRGQGGFQGMPSSLRQPGPRANIRHLAPN-ASNQGPRGMPTGAQRVGGTGQPMG 494
Query: 296 P----GLQYPMPYPGGMLGHRPLNNSPGSVSP-AVANSNP 330
P G+ P P N P V P A+ + P
Sbjct: 495 PRPAMGMTTPRAMPPYKYASTIRNTQPQVVQPIALQQAQP 534
Score = 127 (49.8 bits), Expect = 5.0e-15, Sum P(2) = 5.0e-15
Identities = 27/65 (41%), Positives = 38/65 (58%)
Query: 349 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 408
G NL+I ++ D++L F FG + SAKV +++ G SK FGFV + SP A A+
Sbjct: 294 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEE--GRSKGFGFVCFSSPEEATKAV 351
Query: 409 AMMNG 413
MNG
Sbjct: 352 TEMNG 356
Score = 125 (49.1 bits), Expect = 8.1e-15, Sum P(2) = 8.1e-15
Identities = 27/63 (42%), Positives = 35/63 (55%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N++I + + DQ L F +G+ LS KV D TG S+ FGFVSYE A A+
Sbjct: 193 NVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDP-TGKSRGFGFVSYEKHEDANKAVEE 251
Query: 411 MNG 413
MNG
Sbjct: 252 MNG 254
Score = 107 (42.7 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 35/164 (21%), Positives = 72/164 (43%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
+F+ + K + L F F + ++ D+ S+G FV ++ AD+A+
Sbjct: 102 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYAFVHFETQDAADRAIEKM 159
Query: 77 H-----NKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIK 130
+ ++K G + + A+ + E ++I ++ + + LF YG
Sbjct: 160 NGMLLNDRKVFVGRFKSRKEREAEMGAKAKEFTNVYIKNFGDDMDDQRLKELFDKYGKTL 219
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 174
++++ S+G F+ YE E A A+E +NG ++ G +V
Sbjct: 220 SVKVMTDPTGKSRGFGFVSYEKHEDANKAVEEMNGT-ELNGKTV 262
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 142 (55.0 bits), Expect = 6.1e-15, Sum P(2) = 6.1e-15
Identities = 42/152 (27%), Positives = 76/152 (50%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG + +TEA L F V + + +D TR S G +V +A++A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 77 HNKKTLPGASSPLQVKYA--DGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
N + G P+++ ++ D L + +FI L K++ + FS +G I +
Sbjct: 73 -NFDVIKG--KPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAING 165
++ + SKG AF+ +ET++ A A+E +NG
Sbjct: 130 VVC-DENGSKGYAFVHFETQDAADRAIEKMNG 160
Score = 125 (49.1 bits), Expect = 6.1e-15, Sum P(2) = 6.1e-15
Identities = 27/65 (41%), Positives = 37/65 (56%)
Query: 349 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 408
G NL+I ++ D++L F FG + SAKV ++ G SK FGFV + SP A A+
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAV 350
Query: 409 AMMNG 413
MNG
Sbjct: 351 TEMNG 355
Score = 121 (47.7 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 26/63 (41%), Positives = 35/63 (55%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N++I + + D+ L F +G+ LS KV D TG SK FGFVS+E A A+
Sbjct: 192 NVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDP-TGKSKGFGFVSFEKHEDANKAVEE 250
Query: 411 MNG 413
MNG
Sbjct: 251 MNG 253
Score = 111 (44.1 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 35/156 (22%), Positives = 69/156 (44%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
+F+ + K + L F F + ++ D+ S+G FV ++ AD+A+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYAFVHFETQDAADRAIEKM 158
Query: 77 H-----NKKTLPGASSPLQVKYAD-GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
+ ++K G + + A+ G + ++I ++ + + LFS YG
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTL 218
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 166
++++ SKG F+ +E E A A+E +NGK
Sbjct: 219 SVKVMTDPTGKSKGFGFVSFEKHEDANKAVEEMNGK 254
Score = 55 (24.4 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 31/116 (26%), Positives = 45/116 (38%)
Query: 214 GALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSS 273
G P G+ N + SG +++ L P P G+ P Q + A L+
Sbjct: 440 GGRPQGFQGMPNAM--RQSGPRPALRH-LAPAGTAPASRGL-PVSAQRVGVTTAGQSLAP 495
Query: 274 N---MGPRNYAMPPSGF---VGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSP 323
P A+PP + V S +P V LQ P P + G PL S + +P
Sbjct: 496 RPPVAAPAPRAVPPYKYASSVRSPHPPVQPLQAPQPAVH-VQGQEPLTASMLAAAP 550
>WB|WBGene00003902 [details] [associations]
symbol:pab-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0040010 "positive regulation of growth
rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0043186
"P granule" evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040035 GO:GO:0000932 GO:GO:0007276 GO:GO:0043186 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AL032631 HSSP:P11940 GeneTree:ENSGT00640000091232
GeneID:172920 KEGG:cel:CELE_Y106G6H.2 UCSC:Y106G6H.2b CTD:172920
NextBio:877531 PIR:T26427 RefSeq:NP_001021709.1
ProteinModelPortal:Q9U302 SMR:Q9U302 DIP:DIP-26308N IntAct:Q9U302
MINT:MINT-226577 STRING:Q9U302 PRIDE:Q9U302
EnsemblMetazoa:Y106G6H.2a.1 EnsemblMetazoa:Y106G6H.2a.2
EnsemblMetazoa:Y106G6H.2a.3 EnsemblMetazoa:Y106G6H.2a.4
EnsemblMetazoa:Y106G6H.2a.5 EnsemblMetazoa:Y106G6H.2a.6
WormBase:Y106G6H.2a InParanoid:Q9U302 OMA:CKVAMDE
ArrayExpress:Q9U302 Uniprot:Q9U302
Length = 646
Score = 142 (55.0 bits), Expect = 6.5e-15, Sum P(2) = 6.5e-15
Identities = 40/152 (26%), Positives = 73/152 (48%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG + + E+ L F V + + +D TR S G +V +A++A++
Sbjct: 34 LYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDTM 93
Query: 77 HNKKTLPGASSPLQVKYA--DGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
N + L G P+++ ++ D + R +FI L K + + FS++G I +
Sbjct: 94 -NFEALHG--KPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILSCK 150
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAING 165
+ SKG F+ +ET+E A A++ +NG
Sbjct: 151 VAIDEDGFSKGYGFVHFETEEAAQNAIQKVNG 182
Score = 125 (49.1 bits), Expect = 6.5e-15, Sum P(2) = 6.5e-15
Identities = 25/64 (39%), Positives = 38/64 (59%)
Query: 349 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 408
G NL++ ++ + D L F+++G + SAKV D+ G SK FGFV +E P A +A+
Sbjct: 316 GVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDE-NGRSKGFGFVCFEKPEEATSAV 374
Query: 409 AMMN 412
MN
Sbjct: 375 TEMN 378
Score = 125 (49.1 bits), Expect = 0.00013, P = 0.00013
Identities = 27/66 (40%), Positives = 43/66 (65%)
Query: 349 GA-NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNA 407
GA N+FI ++ + ++ + + F FG +LS KV +D+ G SK +GFV +E+ +AQNA
Sbjct: 118 GAGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDE-DGFSKGYGFVHFETEEAAQNA 176
Query: 408 IAMMNG 413
I +NG
Sbjct: 177 IQKVNG 182
Score = 103 (41.3 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 68/275 (24%), Positives = 104/275 (37%)
Query: 70 DKAVNACHNKKTLPGASSPLQVKYADGELERLEH----KLFIGMLPKNVSEAEVSALFSI 125
D ++ C +K + L+ K+ + ER++ L++ L + V + + F
Sbjct: 281 DLKLHVCRAQKKSE-RHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDDGLKKQFES 339
Query: 126 YGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEK 185
YG I +++ SKG F+ +E E+A +A+ +N K S PL V A ++
Sbjct: 340 YGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSKMVC---SKPLYVAIAQRKE 396
Query: 186 EXXXXXXX------XXXXXXNNLPNADSQHPSLFG-----ALPMGYAPPYNGYGYQA--- 231
+ N+P A +P+ G A PM + G G Q
Sbjct: 397 DRRAQLASQYMQRLASMRMHGNVPGAAMYNPTQPGPGYYVANPMQQQRNFAG-GQQMVRP 455
Query: 232 SGSYGLM-QYRLPPMQNQPGF-HGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVG 289
G +G+ QY P+QNQ G P V Q R + P+ Y G V
Sbjct: 456 GGRWGMQNQY---PVQNQYMMAQG--PGVYQNRMGRPQNQQGGPRGPPQQYNQVAQGGVR 510
Query: 290 -SGYPAV--PGLQY---PMPYPGGMLGHRPLNNSP 318
G P PG+Q P P P RP P
Sbjct: 511 MQGPPRTQNPGVQQQNVPRP-PQQQQQQRPAPTGP 544
Score = 85 (35.0 bits), Expect = 9.1e-11, Sum P(2) = 9.1e-11
Identities = 17/62 (27%), Positives = 32/62 (51%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N+++ + + + L F FG + S +V G SK FGFV++ +P A+ A+
Sbjct: 214 NVYVKNFGDHYNKETLEKLFAKFGNITSCEVMT--VEGKSKGFGFVAFANPEEAETAVQA 271
Query: 411 MN 412
++
Sbjct: 272 LH 273
Score = 84 (34.6 bits), Expect = 9.0e-09, Sum P(2) = 9.0e-09
Identities = 35/176 (19%), Positives = 75/176 (42%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
+F+ + K + + F F + + D+ S+G FV + + A A+
Sbjct: 122 IFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDG-FSKGYGFVHFETEEAAQNAIQKV 180
Query: 77 HN-----KKTLPGASSPLQVKYAD-GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
+ KK G P + + GE + +++ + ++ + LF+ +G I
Sbjct: 181 NGMLLAGKKVFVGKFQPRAQRNRELGETAKQFTNVYVKNFGDHYNKETLEKLFAKFGNIT 240
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+++ + SKG F+ + E+A A++A++ +EG+ + L V A + E
Sbjct: 241 SCEVMT-VEGKSKGFGFVAFANPEEAETAVQALHDS-TIEGTDLKLHVCRAQKKSE 294
Score = 67 (28.6 bits), Expect = 5.0e-07, Sum P(2) = 5.0e-07
Identities = 25/86 (29%), Positives = 40/86 (46%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVD--EVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
++V H + L +F +F + EV ++ K S+G FV + +EA+ AV
Sbjct: 215 VYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGK----SKGFGFVAFANPEEAETAVQ 270
Query: 75 ACHNKKTLPGASSPLQVKYADGELER 100
A H+ T+ G L V A + ER
Sbjct: 271 ALHDS-TIEGTDLKLHVCRAQKKSER 295
>WB|WBGene00001368 [details] [associations]
symbol:exc-7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0002064 "epithelial cell development"
evidence=IMP] [GO:0035150 "regulation of tube size" evidence=IMP]
[GO:0016607 "nuclear speck" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0002064 eggNOG:COG0724 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 HSSP:P26378 GeneTree:ENSGT00560000077064
OMA:DIGESKT GO:GO:0035150 EMBL:Z36752 PIR:T21822 RefSeq:NP_496057.1
ProteinModelPortal:Q20084 SMR:Q20084 DIP:DIP-27011N IntAct:Q20084
MINT:MINT-1038844 STRING:Q20084 PaxDb:Q20084 EnsemblMetazoa:F35H8.5
GeneID:174506 KEGG:cel:CELE_F35H8.5 CTD:174506 WormBase:F35H8.5
InParanoid:Q20084 NextBio:884320 Uniprot:Q20084
Length = 456
Score = 214 (80.4 bits), Expect = 7.4e-15, P = 7.4e-15
Identities = 89/413 (21%), Positives = 175/413 (42%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L + +P+ MT+ ++ ++F ++ +++DK T S G FV ++A +AV
Sbjct: 41 KTNLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDALRAV 100
Query: 74 NACHNKKTLPGASSPLQVKYADGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
++ + + + ++V YA ++++ L++ +PK+++ E+ ++F +G I
Sbjct: 101 SSFNGLRL---QNKTIKVSYARPSNDQIKGSNLYVSGIPKSMTLHELESIFRPFGQIITS 157
Query: 133 QILRGSQQ-TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE-----KE 186
+IL + SKG F++++ K++A A++ +NG G S + VK+A+ K
Sbjct: 158 RILSDNVTGLSKGVGFVRFDKKDEADVAIKTLNGSIP-SGCSEQITVKFANNPASNNPKG 216
Query: 187 XXXXXXXXXXXXXNNLP-----NADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYR 241
+P A + + G PM +AP + Y Y G+ +
Sbjct: 217 LLSDLEAVQQAATTLVPLSTILGAPTLRATAGGIGPMHHAPITSKYRYSPMGAITAVSQP 276
Query: 242 LPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYP 301
+ + ++Q NA+ G +P ++ A+P F S A Q+
Sbjct: 277 TATLPADYLTTSALLQMSQLNALAGLNPFATAT------AVPD--FTAS-LIAHQQQQHA 327
Query: 302 MPYP-GGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQE 360
+ P N G V+ A++ + G LF+Y++ +
Sbjct: 328 VAQQHAAQTASPPATN--GQVAGLAAHAQLSALSASVAATLPPSD-TAGYCLFVYNLSSD 384
Query: 361 FGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 413
D L F FG +++ K+ D T K + FVS + A NA+ +NG
Sbjct: 385 TDDTLLWQLFSQFGAIVNVKILRD-LTQQCKGYAFVSMSNYTEAYNAMLSLNG 436
>DICTYBASE|DDB_G0274523 [details] [associations]
symbol:DDB_G0274523 "RNA recognition motif-containing
protein RRM" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0274523 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000012 eggNOG:COG0724
RefSeq:XP_644081.1 ProteinModelPortal:Q86HL7 PRIDE:Q86HL7
EnsemblProtists:DDB0233759 GeneID:8619510 KEGG:ddi:DDB_G0274523
InParanoid:Q86HL7 OMA:QNNHHDP Uniprot:Q86HL7
Length = 904
Score = 153 (58.9 bits), Expect = 8.0e-15, Sum P(2) = 8.0e-15
Identities = 49/178 (27%), Positives = 86/178 (48%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ +FV +P + L +F ++ V ++ D S G FV S QE+ A+
Sbjct: 108 QTNVFVKHLPYEFNDEDLENLFSKYGKVLSSKVMIDPKGN-SYGYGFVRFSSPQESAAAI 166
Query: 74 NAC-----HNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGT 128
NKK L S+ Y + + + LFI LP +V++ ++ LF +G
Sbjct: 167 EELDGYQYQNKKLLCRLSN----LYTNLNSKYPSNNLFIKPLPYDVTDDQLRKLFEPFGK 222
Query: 129 IKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
I + +++ SK F+++ ++ A A++A+NG + S PLVVK+ADTE++
Sbjct: 223 IIECKVMLDHNGQSKFAGFVRFSSELDASKAIDAMNGVRINKDSGYPLVVKYADTEQQ 280
Score = 139 (54.0 bits), Expect = 5.8e-06, P = 5.8e-06
Identities = 27/63 (42%), Positives = 41/63 (65%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N+F+ H+P EF D++L N F +G+VLS+KV +D G S +GFV + SP + AI
Sbjct: 110 NVFVKHLPYEFNDEDLENLFSKYGKVLSSKVMIDPK-GNSYGYGFVRFSSPQESAAAIEE 168
Query: 411 MNG 413
++G
Sbjct: 169 LDG 171
Score = 124 (48.7 bits), Expect = 7.6e-10, Sum P(2) = 7.6e-10
Identities = 27/66 (40%), Positives = 36/66 (54%)
Query: 348 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNA 407
P NLFI +P + D +L F+ FG+++ KV +D G SK GFV + S A A
Sbjct: 195 PSNNLFIKPLPYDVTDDQLRKLFEPFGKIIECKVMLDH-NGQSKFAGFVRFSSELDASKA 253
Query: 408 IAMMNG 413
I MNG
Sbjct: 254 IDAMNG 259
Score = 116 (45.9 bits), Expect = 8.0e-15, Sum P(2) = 8.0e-15
Identities = 24/63 (38%), Positives = 33/63 (52%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
NLF++H+P D L F FG++ S +V DK TG +K +GFV + A
Sbjct: 770 NLFVFHLPPFVDDSYLFQLFSQFGKLQSVRVITDKDTGENKGYGFVKFYQTDEALKCQKE 829
Query: 411 MNG 413
MNG
Sbjct: 830 MNG 832
Score = 109 (43.4 bits), Expect = 5.4e-10, Sum P(2) = 5.4e-10
Identities = 27/88 (30%), Positives = 47/88 (53%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
LF+ +P +T+ QL +F+ F + E ++ D + S+ FV S +A KA++A
Sbjct: 199 LFIKPLPYDVTDDQLRKLFEPFGKIIECKVMLDHNGQ-SKFAGFVRFSSELDASKAIDAM 257
Query: 77 HNKKTLPGASSPLQVKYADGELERLEHK 104
+ + + PL VKYAD E +++ K
Sbjct: 258 NGVRINKDSGYPLVVKYADTEQQKISRK 285
Score = 99 (39.9 bits), Expect = 7.6e-10, Sum P(2) = 7.6e-10
Identities = 19/69 (27%), Positives = 41/69 (59%)
Query: 97 ELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQA 156
ELER + +F+ LP ++ ++ LFS YG + +++ + S G F+++ + +++
Sbjct: 103 ELERDQTNVFVKHLPYEFNDEDLENLFSKYGKVLSSKVMIDPKGNSYGYGFVRFSSPQES 162
Query: 157 LAALEAING 165
AA+E ++G
Sbjct: 163 AAAIEELDG 171
>CGD|CAL0001392 [details] [associations]
symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
Length = 629
Score = 137 (53.3 bits), Expect = 8.5e-15, Sum P(2) = 8.5e-15
Identities = 38/150 (25%), Positives = 65/150 (43%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG++ + EA L +F V + + +D ++ S G +V ++ +KA+
Sbjct: 54 LYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAIEEL 113
Query: 77 HNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 135
N + G + D R + +FI L + + FS +G I ++
Sbjct: 114 -NYNPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVA 172
Query: 136 RGSQQTSKGCAFLKYETKEQALAALEAING 165
SK F+ YET E A AA+E +NG
Sbjct: 173 TDEFGQSKCFGFVHYETAEAAEAAIENVNG 202
Score = 133 (51.9 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 28/63 (44%), Positives = 41/63 (65%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N+FI ++ ++ L + F AFG++LS KV D+ G SKCFGFV YE+ +A+ AI
Sbjct: 141 NIFIKNLHPAIDNKALHDTFSAFGKILSCKVATDEF-GQSKCFGFVHYETAEAAEAAIEN 199
Query: 411 MNG 413
+NG
Sbjct: 200 VNG 202
Score = 129 (50.5 bits), Expect = 8.5e-15, Sum P(2) = 8.5e-15
Identities = 28/64 (43%), Positives = 38/64 (59%)
Query: 349 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 408
G NLF+ ++ ++L F+ FG + SAKV VD+A G SK FGFV + +P A AI
Sbjct: 335 GVNLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDEA-GKSKGFGFVCFTTPEEATKAI 393
Query: 409 AMMN 412
MN
Sbjct: 394 TEMN 397
Score = 91 (37.1 bits), Expect = 7.4e-11, Sum P(2) = 7.4e-11
Identities = 19/63 (30%), Positives = 36/63 (57%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDK-ATGVSKCFGFVSYESPASAQNAIA 409
N+++ +I + ++ F FG++ S ++++K G SK FGFV++E SA A+
Sbjct: 234 NIYVKNIDLNYSEESFEKLFSPFGKITS--IYLEKDQDGKSKGFGFVNFEDHESAVKAVE 291
Query: 410 MMN 412
+N
Sbjct: 292 ELN 294
Score = 49 (22.3 bits), Expect = 1.9e-06, Sum P(3) = 1.9e-06
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 230 QASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNA-MRGASPDL 271
Q + + GL +PPM G G PP +GNA G +P +
Sbjct: 434 QNAAAGGLPGQFIPPMFY--GQQGFFPPNGRGNAPYPGPNPQM 474
Score = 37 (18.1 bits), Expect = 1.9e-06, Sum P(3) = 1.9e-06
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 346 GPPGANLFIYHIPQEF 361
GP G + +Y IP +F
Sbjct: 491 GPNGQPVPVYGIPPQF 506
>UNIPROTKB|F1SDG0 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:CU468464 RefSeq:XP_001926524.1 UniGene:Ssc.3222
ProteinModelPortal:F1SDG0 Ensembl:ENSSSCT00000007303
GeneID:100157814 KEGG:ssc:100157814 Uniprot:F1SDG0
Length = 424
Score = 212 (79.7 bits), Expect = 1.0e-14, P = 1.0e-14
Identities = 83/302 (27%), Positives = 134/302 (44%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
++VG + + ++E L +F + V ++ KD+ T +G FV S ++AD A+
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 77 HNKKTLPGASSPLQVKYADGELERLE--HKLFIGMLPKNVSEAEVSALFSIYGTIKDL-Q 133
+ K L G P++V A + L+ +FIG L + E + FS +G I +
Sbjct: 75 NMIK-LYG--KPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 134 ILRGSQQ-TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA---DTEKEXXX 189
I+R SKG AF+ + + + + AA+EA+NG++ P+ V +A D++ E
Sbjct: 132 IMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNR---PITVSYAFKKDSKGERHG 188
Query: 190 XXXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQP 249
N L AD H LF P PP +S GL +PP + P
Sbjct: 189 SAAERLLAAQNPLSQADRPH-QLFADAP---PPPSAPNPVVSSLGSGLPPPGMPPPGSFP 244
Query: 250 GFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGML 309
+ PP + A P G + P +G G+G+PA G +P P+P G +
Sbjct: 245 P--PVPPPGALPPGIPPAMPPPPMPPGAGGHGPPSAGTPGAGHPA-HGHSHPHPFPPGGM 301
Query: 310 GH 311
H
Sbjct: 302 PH 303
>UNIPROTKB|E2RQC8 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:AAEX03008681
ProteinModelPortal:E2RQC8 PRIDE:E2RQC8 Ensembl:ENSCAFT00000000885
NextBio:20898275 Uniprot:E2RQC8
Length = 596
Score = 141 (54.7 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
Identities = 41/152 (26%), Positives = 75/152 (49%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG + +TEA L F + + + +D TR S G +V +A++A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 77 HNKKTLPGASSPLQVKYA--DGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
N + G P+++ ++ D L + +FI L K++ + FS +G I +
Sbjct: 73 -NFDVIKG--KPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAING 165
++ + SKG F+ +ET+E A A+E +NG
Sbjct: 130 VVC-DENGSKGYGFVHFETQEAAERAIEKMNG 160
Score = 122 (48.0 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
Identities = 27/63 (42%), Positives = 38/63 (60%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N++I + ++ D+ L + F FG LS KV D++ G SK FGFVS+E AQ A+
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDE 250
Query: 411 MNG 413
MNG
Sbjct: 251 MNG 253
Score = 117 (46.2 bits), Expect = 0.00088, P = 0.00088
Identities = 26/63 (41%), Positives = 40/63 (63%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N+FI ++ + ++ L + F AFG +LS KV D+ G SK +GFV +E+ +A+ AI
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYGFVHFETQEAAERAIEK 157
Query: 411 MNG 413
MNG
Sbjct: 158 MNG 160
Score = 103 (41.3 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 32/164 (19%), Positives = 74/164 (45%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
+F+ + K + L F F + ++ D+ S+G FV +++ A++A+
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYGFVHFETQEAAERAIEKM 158
Query: 77 H-----NKKTLPGASSPLQVKYAD-GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
+ ++K G + + A+ G + ++I +++ + + LF +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPAL 218
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 174
++++ SKG F+ +E E A A++ +NGK ++ G +
Sbjct: 219 SVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGK-ELNGKQI 261
Score = 86 (35.3 bits), Expect = 7.4e-11, Sum P(2) = 7.4e-11
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 349 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSY 398
G NL++ ++ D+ L F FG + SAKV ++ G SK FGFV +
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCF 340
Score = 41 (19.5 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 17/54 (31%), Positives = 21/54 (38%)
Query: 283 PPSGFVGSGYPAVPG--LQYP-------MPYPGGML-GHRP--LNNSPGSVSPA 324
PPSG+ + P YP P P G RP N PG++ PA
Sbjct: 364 PPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA 417
Score = 41 (19.5 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 17/62 (27%), Positives = 22/62 (35%)
Query: 220 YAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRN 279
Y PP + S + R P QN PG P + MR AS + M +
Sbjct: 382 YYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQR 441
Query: 280 YA 281
A
Sbjct: 442 VA 443
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 141 (54.7 bits), Expect = 1.7e-14, Sum P(2) = 1.7e-14
Identities = 41/152 (26%), Positives = 75/152 (49%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG + +TEA L F + + + +D TR S G +V +A++A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 77 HNKKTLPGASSPLQVKYA--DGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
N + G P+++ ++ D L + +FI L K++ + FS +G I +
Sbjct: 73 -NFDVIKG--KPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAING 165
++ + SKG F+ +ET+E A A+E +NG
Sbjct: 130 VVC-DENGSKGYGFVHFETQEAAERAIEKMNG 160
Score = 122 (48.0 bits), Expect = 1.7e-14, Sum P(2) = 1.7e-14
Identities = 27/63 (42%), Positives = 38/63 (60%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N++I + ++ D+ L + F FG LS KV D++ G SK FGFVS+E AQ A+
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDE 250
Query: 411 MNG 413
MNG
Sbjct: 251 MNG 253
Score = 121 (47.7 bits), Expect = 2.1e-14, Sum P(2) = 2.1e-14
Identities = 26/65 (40%), Positives = 36/65 (55%)
Query: 349 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 408
G NL++ ++ D+ L F FG + SAKV ++ G SK FGFV + SP A A+
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAV 350
Query: 409 AMMNG 413
MNG
Sbjct: 351 TEMNG 355
Score = 117 (46.2 bits), Expect = 0.00096, P = 0.00096
Identities = 26/63 (41%), Positives = 40/63 (63%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N+FI ++ + ++ L + F AFG +LS KV D+ G SK +GFV +E+ +A+ AI
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYGFVHFETQEAAERAIEK 157
Query: 411 MNG 413
MNG
Sbjct: 158 MNG 160
Score = 103 (41.3 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 32/164 (19%), Positives = 74/164 (45%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
+F+ + K + L F F + ++ D+ S+G FV +++ A++A+
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYGFVHFETQEAAERAIEKM 158
Query: 77 H-----NKKTLPGASSPLQVKYAD-GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
+ ++K G + + A+ G + ++I +++ + + LF +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPAL 218
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 174
++++ SKG F+ +E E A A++ +NGK ++ G +
Sbjct: 219 SVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGK-ELNGKQI 261
Score = 41 (19.5 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 17/54 (31%), Positives = 21/54 (38%)
Query: 283 PPSGFVGSGYPAVPG--LQYP-------MPYPGGML-GHRP--LNNSPGSVSPA 324
PPSG+ + P YP P P G RP N PG++ PA
Sbjct: 404 PPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA 457
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 141 (54.7 bits), Expect = 1.7e-14, Sum P(2) = 1.7e-14
Identities = 41/152 (26%), Positives = 75/152 (49%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG + +TEA L F + + + +D TR S G +V +A++A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 77 HNKKTLPGASSPLQVKYA--DGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
N + G P+++ ++ D L + +FI L K++ + FS +G I +
Sbjct: 73 -NFDVIKG--KPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAING 165
++ + SKG F+ +ET+E A A+E +NG
Sbjct: 130 VVC-DENGSKGYGFVHFETQEAAERAIEKMNG 160
Score = 122 (48.0 bits), Expect = 1.7e-14, Sum P(2) = 1.7e-14
Identities = 27/63 (42%), Positives = 38/63 (60%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N++I + ++ D+ L + F FG LS KV D++ G SK FGFVS+E AQ A+
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDE 250
Query: 411 MNG 413
MNG
Sbjct: 251 MNG 253
Score = 121 (47.7 bits), Expect = 2.1e-14, Sum P(2) = 2.1e-14
Identities = 26/65 (40%), Positives = 36/65 (55%)
Query: 349 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 408
G NL++ ++ D+ L F FG + SAKV ++ G SK FGFV + SP A A+
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAV 350
Query: 409 AMMNG 413
MNG
Sbjct: 351 TEMNG 355
Score = 117 (46.2 bits), Expect = 0.00096, P = 0.00096
Identities = 26/63 (41%), Positives = 40/63 (63%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N+FI ++ + ++ L + F AFG +LS KV D+ G SK +GFV +E+ +A+ AI
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYGFVHFETQEAAERAIEK 157
Query: 411 MNG 413
MNG
Sbjct: 158 MNG 160
Score = 103 (41.3 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 32/164 (19%), Positives = 74/164 (45%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
+F+ + K + L F F + ++ D+ S+G FV +++ A++A+
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYGFVHFETQEAAERAIEKM 158
Query: 77 H-----NKKTLPGASSPLQVKYAD-GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
+ ++K G + + A+ G + ++I +++ + + LF +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPAL 218
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 174
++++ SKG F+ +E E A A++ +NGK ++ G +
Sbjct: 219 SVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGK-ELNGKQI 261
Score = 41 (19.5 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 17/54 (31%), Positives = 21/54 (38%)
Query: 283 PPSGFVGSGYPAVPG--LQYP-------MPYPGGML-GHRP--LNNSPGSVSPA 324
PPSG+ + P YP P P G RP N PG++ PA
Sbjct: 404 PPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA 457
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 141 (54.7 bits), Expect = 1.7e-14, Sum P(2) = 1.7e-14
Identities = 41/152 (26%), Positives = 75/152 (49%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG + +TEA L F + + + +D TR S G +V +A++A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 77 HNKKTLPGASSPLQVKYA--DGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
N + G P+++ ++ D L + +FI L K++ + FS +G I +
Sbjct: 73 -NFDVIKG--KPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAING 165
++ + SKG F+ +ET+E A A+E +NG
Sbjct: 130 VVC-DENGSKGYGFVHFETQEAAERAIEKMNG 160
Score = 122 (48.0 bits), Expect = 1.7e-14, Sum P(2) = 1.7e-14
Identities = 27/63 (42%), Positives = 38/63 (60%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N++I + ++ D+ L + F FG LS KV D++ G SK FGFVS+E AQ A+
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDE 250
Query: 411 MNG 413
MNG
Sbjct: 251 MNG 253
Score = 121 (47.7 bits), Expect = 2.1e-14, Sum P(2) = 2.1e-14
Identities = 26/65 (40%), Positives = 36/65 (55%)
Query: 349 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 408
G NL++ ++ D+ L F FG + SAKV ++ G SK FGFV + SP A A+
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAV 350
Query: 409 AMMNG 413
MNG
Sbjct: 351 TEMNG 355
Score = 117 (46.2 bits), Expect = 0.00096, P = 0.00096
Identities = 26/63 (41%), Positives = 40/63 (63%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N+FI ++ + ++ L + F AFG +LS KV D+ G SK +GFV +E+ +A+ AI
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYGFVHFETQEAAERAIEK 157
Query: 411 MNG 413
MNG
Sbjct: 158 MNG 160
Score = 103 (41.3 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 32/164 (19%), Positives = 74/164 (45%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
+F+ + K + L F F + ++ D+ S+G FV +++ A++A+
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYGFVHFETQEAAERAIEKM 158
Query: 77 H-----NKKTLPGASSPLQVKYAD-GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
+ ++K G + + A+ G + ++I +++ + + LF +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPAL 218
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 174
++++ SKG F+ +E E A A++ +NGK ++ G +
Sbjct: 219 SVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGK-ELNGKQI 261
Score = 41 (19.5 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 17/54 (31%), Positives = 21/54 (38%)
Query: 283 PPSGFVGSGYPAVPG--LQYP-------MPYPGGML-GHRP--LNNSPGSVSPA 324
PPSG+ + P YP P P G RP N PG++ PA
Sbjct: 404 PPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA 457
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 141 (54.7 bits), Expect = 1.7e-14, Sum P(2) = 1.7e-14
Identities = 41/152 (26%), Positives = 75/152 (49%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG + +TEA L F + + + +D TR S G +V +A++A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 77 HNKKTLPGASSPLQVKYA--DGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
N + G P+++ ++ D L + +FI L K++ + FS +G I +
Sbjct: 73 -NFDVIKG--KPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAING 165
++ + SKG F+ +ET+E A A+E +NG
Sbjct: 130 VVC-DENGSKGYGFVHFETQEAAERAIEKMNG 160
Score = 122 (48.0 bits), Expect = 1.7e-14, Sum P(2) = 1.7e-14
Identities = 27/63 (42%), Positives = 38/63 (60%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N++I + ++ D+ L + F FG LS KV D++ G SK FGFVS+E AQ A+
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDE 250
Query: 411 MNG 413
MNG
Sbjct: 251 MNG 253
Score = 121 (47.7 bits), Expect = 2.1e-14, Sum P(2) = 2.1e-14
Identities = 26/65 (40%), Positives = 36/65 (55%)
Query: 349 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 408
G NL++ ++ D+ L F FG + SAKV ++ G SK FGFV + SP A A+
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAV 350
Query: 409 AMMNG 413
MNG
Sbjct: 351 TEMNG 355
Score = 117 (46.2 bits), Expect = 0.00096, P = 0.00096
Identities = 26/63 (41%), Positives = 40/63 (63%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N+FI ++ + ++ L + F AFG +LS KV D+ G SK +GFV +E+ +A+ AI
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYGFVHFETQEAAERAIEK 157
Query: 411 MNG 413
MNG
Sbjct: 158 MNG 160
Score = 103 (41.3 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 32/164 (19%), Positives = 74/164 (45%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
+F+ + K + L F F + ++ D+ S+G FV +++ A++A+
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYGFVHFETQEAAERAIEKM 158
Query: 77 H-----NKKTLPGASSPLQVKYAD-GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
+ ++K G + + A+ G + ++I +++ + + LF +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPAL 218
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 174
++++ SKG F+ +E E A A++ +NGK ++ G +
Sbjct: 219 SVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGK-ELNGKQI 261
Score = 41 (19.5 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 17/54 (31%), Positives = 21/54 (38%)
Query: 283 PPSGFVGSGYPAVPG--LQYP-------MPYPGGML-GHRP--LNNSPGSVSPA 324
PPSG+ + P YP P P G RP N PG++ PA
Sbjct: 404 PPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA 457
>FB|FBgn0086675 [details] [associations]
symbol:fne "found in neurons" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0051252 "regulation of
RNA metabolic process" evidence=IMP] [GO:0008266 "poly(U) RNA
binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008049 "male courtship behavior" evidence=IMP]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0008266 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:COG0724
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 KO:K13208
OMA:SNSRNCP HSSP:Q60900 GO:GO:0051252 EMBL:AF239667 EMBL:BT120384
RefSeq:NP_001096965.1 RefSeq:NP_001245646.1 RefSeq:NP_001245648.1
RefSeq:NP_001245649.1 RefSeq:NP_572842.1 UniGene:Dm.3314 SMR:Q9VYI0
IntAct:Q9VYI0 MINT:MINT-1646975 STRING:Q9VYI0
EnsemblMetazoa:FBtr0073712 EnsemblMetazoa:FBtr0113493
EnsemblMetazoa:FBtr0306738 EnsemblMetazoa:FBtr0308694
EnsemblMetazoa:FBtr0308695 EnsemblMetazoa:FBtr0333319
EnsemblMetazoa:FBtr0333320 GeneID:32245 KEGG:dme:Dmel_CG4396
UCSC:CG4396-RA CTD:32245 FlyBase:FBgn0086675 InParanoid:Q9VYI0
OrthoDB:EOG44B8HT GenomeRNAi:32245 NextBio:777561 Uniprot:Q9VYI0
Length = 356
Score = 162 (62.1 bits), Expect = 1.7e-14, Sum P(2) = 1.7e-14
Identities = 54/224 (24%), Positives = 103/224 (45%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTR------------------AS 55
R L V +P+ MT+ ++ ++F ++ +++DK + S
Sbjct: 25 RTNLIVNYLPQTMTQEEMRSLFSSIGELESCKLVRDKVSGNLVLPASLTALNPALQQGQS 84
Query: 56 RGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNV 114
G FV ++A+KAVN + + + ++V YA E ++ L++ LPKN+
Sbjct: 85 LGYGFVNYVRAEDAEKAVNTLNGLRL---QNKVIKVSYARPSSESIKGANLYVSGLPKNL 141
Query: 115 SEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSS 173
S+ ++ +F+ +G I +IL + SKG F++++ + +A A++ +NGK +G +
Sbjct: 142 SQPDLEGMFASFGKIITSRILCDNISGLSKGVGFIRFDQRNEAERAIQELNGKTP-KGYA 200
Query: 174 VPLVVKWADTEKEXXXXXXXXXXXXXNNLPNADSQHPSLFGALP 217
P+ VK+A+ P A + L GALP
Sbjct: 201 EPITVKFANNPSNSAKAQIAPPLTAYLT-PQAAAATRRLAGALP 243
Score = 124 (48.7 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
Identities = 21/69 (30%), Positives = 41/69 (59%)
Query: 345 EGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASA 404
E GANL++ +P+ +L F +FG+++++++ D +G+SK GF+ ++ A
Sbjct: 125 ESIKGANLYVSGLPKNLSQPDLEGMFASFGKIITSRILCDNISGLSKGVGFIRFDQRNEA 184
Query: 405 QNAIAMMNG 413
+ AI +NG
Sbjct: 185 ERAIQELNG 193
Score = 90 (36.7 bits), Expect = 1.7e-14, Sum P(2) = 1.7e-14
Identities = 23/62 (37%), Positives = 31/62 (50%)
Query: 352 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 411
+F+Y++ E + L F FG V S KV D T K FGFV+ + A AI +
Sbjct: 275 IFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQTSKCKGFGFVTMTNYDEAVVAIQSL 334
Query: 412 NG 413
NG
Sbjct: 335 NG 336
Score = 61 (26.5 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 95 DGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILR 136
DG + L + LP+ +++ E+ +LFS G ++ +++R
Sbjct: 18 DGSNDESRTNLIVNYLPQTMTQEEMRSLFSSIGELESCKLVR 59
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 141 (54.7 bits), Expect = 1.7e-14, Sum P(2) = 1.7e-14
Identities = 41/152 (26%), Positives = 75/152 (49%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG + +TEA L F + + + +D TR S G +V +A++A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 77 HNKKTLPGASSPLQVKYA--DGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
N + G P+++ ++ D L + +FI L K++ + FS +G I +
Sbjct: 73 -NFDVIKG--KPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAING 165
++ + SKG F+ +ET+E A A+E +NG
Sbjct: 130 VVC-DENGSKGYGFVHFETQEAAERAIEKMNG 160
Score = 122 (48.0 bits), Expect = 1.7e-14, Sum P(2) = 1.7e-14
Identities = 27/63 (42%), Positives = 38/63 (60%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N++I + ++ D+ L + F FG LS KV D++ G SK FGFVS+E AQ A+
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDE 250
Query: 411 MNG 413
MNG
Sbjct: 251 MNG 253
Score = 121 (47.7 bits), Expect = 2.2e-14, Sum P(2) = 2.2e-14
Identities = 26/65 (40%), Positives = 36/65 (55%)
Query: 349 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 408
G NL++ ++ D+ L F FG + SAKV ++ G SK FGFV + SP A A+
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAV 350
Query: 409 AMMNG 413
MNG
Sbjct: 351 TEMNG 355
Score = 117 (46.2 bits), Expect = 0.00098, P = 0.00098
Identities = 26/63 (41%), Positives = 40/63 (63%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N+FI ++ + ++ L + F AFG +LS KV D+ G SK +GFV +E+ +A+ AI
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYGFVHFETQEAAERAIEK 157
Query: 411 MNG 413
MNG
Sbjct: 158 MNG 160
Score = 103 (41.3 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
Identities = 32/164 (19%), Positives = 74/164 (45%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
+F+ + K + L F F + ++ D+ S+G FV +++ A++A+
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYGFVHFETQEAAERAIEKM 158
Query: 77 H-----NKKTLPGASSPLQVKYAD-GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
+ ++K G + + A+ G + ++I +++ + + LF +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPAL 218
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 174
++++ SKG F+ +E E A A++ +NGK ++ G +
Sbjct: 219 SVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGK-ELNGKQI 261
Score = 41 (19.5 bits), Expect = 4.0e-06, Sum P(2) = 4.0e-06
Identities = 17/54 (31%), Positives = 21/54 (38%)
Query: 283 PPSGFVGSGYPAVPG--LQYP-------MPYPGGML-GHRP--LNNSPGSVSPA 324
PPSG+ + P YP P P G RP N PG++ PA
Sbjct: 404 PPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA 457
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 141 (54.7 bits), Expect = 2.1e-14, Sum P(2) = 2.1e-14
Identities = 41/152 (26%), Positives = 75/152 (49%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG + +TEA L F + + + +D TR S G +V +A++A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 77 HNKKTLPGASSPLQVKYA--DGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
N + G P+++ ++ D L + +FI L K++ + FS +G I +
Sbjct: 73 -NFDVIKG--KPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAING 165
++ + SKG F+ +ET+E A A+E +NG
Sbjct: 130 VVC-DENGSKGYGFVHFETQEAAERAIEKMNG 160
Score = 121 (47.7 bits), Expect = 2.1e-14, Sum P(2) = 2.1e-14
Identities = 27/63 (42%), Positives = 37/63 (58%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N++I + ++ D+ L F FG LS KV D++ G SK FGFVS+E AQ A+
Sbjct: 192 NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDE 250
Query: 411 MNG 413
MNG
Sbjct: 251 MNG 253
Score = 121 (47.7 bits), Expect = 2.1e-14, Sum P(2) = 2.1e-14
Identities = 26/65 (40%), Positives = 36/65 (55%)
Query: 349 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 408
G NL++ ++ D+ L F FG + SAKV ++ G SK FGFV + SP A A+
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAV 350
Query: 409 AMMNG 413
MNG
Sbjct: 351 TEMNG 355
Score = 117 (46.2 bits), Expect = 0.00096, P = 0.00096
Identities = 26/63 (41%), Positives = 40/63 (63%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N+FI ++ + ++ L + F AFG +LS KV D+ G SK +GFV +E+ +A+ AI
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYGFVHFETQEAAERAIEK 157
Query: 411 MNG 413
MNG
Sbjct: 158 MNG 160
Score = 104 (41.7 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 32/164 (19%), Positives = 74/164 (45%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
+F+ + K + L F F + ++ D+ S+G FV +++ A++A+
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYGFVHFETQEAAERAIEKM 158
Query: 77 H-----NKKTLPGASSPLQVKYAD-GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
+ ++K G + + A+ G + ++I +++ + + LF +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPAL 218
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 174
++++ SKG F+ +E E A A++ +NGK ++ G +
Sbjct: 219 SVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGK-ELNGKQI 261
Score = 41 (19.5 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 17/54 (31%), Positives = 21/54 (38%)
Query: 283 PPSGFVGSGYPAVPG--LQYP-------MPYPGGML-GHRP--LNNSPGSVSPA 324
PPSG+ + P YP P P G RP N PG++ PA
Sbjct: 404 PPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA 457
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 141 (54.7 bits), Expect = 2.1e-14, Sum P(2) = 2.1e-14
Identities = 41/152 (26%), Positives = 75/152 (49%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG + +TEA L F + + + +D TR S G +V +A++A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 77 HNKKTLPGASSPLQVKYA--DGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
N + G P+++ ++ D L + +FI L K++ + FS +G I +
Sbjct: 73 -NFDVIKG--KPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAING 165
++ + SKG F+ +ET+E A A+E +NG
Sbjct: 130 VVC-DENGSKGYGFVHFETQEAAERAIEKMNG 160
Score = 121 (47.7 bits), Expect = 2.1e-14, Sum P(2) = 2.1e-14
Identities = 27/63 (42%), Positives = 37/63 (58%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N++I + ++ D+ L F FG LS KV D++ G SK FGFVS+E AQ A+
Sbjct: 192 NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDE 250
Query: 411 MNG 413
MNG
Sbjct: 251 MNG 253
Score = 121 (47.7 bits), Expect = 2.1e-14, Sum P(2) = 2.1e-14
Identities = 26/65 (40%), Positives = 36/65 (55%)
Query: 349 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 408
G NL++ ++ D+ L F FG + SAKV ++ G SK FGFV + SP A A+
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAV 350
Query: 409 AMMNG 413
MNG
Sbjct: 351 TEMNG 355
Score = 117 (46.2 bits), Expect = 0.00096, P = 0.00096
Identities = 26/63 (41%), Positives = 40/63 (63%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N+FI ++ + ++ L + F AFG +LS KV D+ G SK +GFV +E+ +A+ AI
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYGFVHFETQEAAERAIEK 157
Query: 411 MNG 413
MNG
Sbjct: 158 MNG 160
Score = 104 (41.7 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 32/164 (19%), Positives = 74/164 (45%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
+F+ + K + L F F + ++ D+ S+G FV +++ A++A+
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYGFVHFETQEAAERAIEKM 158
Query: 77 H-----NKKTLPGASSPLQVKYAD-GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
+ ++K G + + A+ G + ++I +++ + + LF +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPAL 218
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 174
++++ SKG F+ +E E A A++ +NGK ++ G +
Sbjct: 219 SVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGK-ELNGKQI 261
Score = 41 (19.5 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 17/54 (31%), Positives = 21/54 (38%)
Query: 283 PPSGFVGSGYPAVPG--LQYP-------MPYPGGML-GHRP--LNNSPGSVSPA 324
PPSG+ + P YP P P G RP N PG++ PA
Sbjct: 404 PPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA 457
>UNIPROTKB|Q4VXU2 [details] [associations]
symbol:PABPC1L "Polyadenylate-binding protein 1-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 EMBL:AL008725
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 HOGENOM:HOG000217922 OrthoDB:EOG4K6G3V
HSSP:P11940 EMBL:AL109839 IPI:IPI00556259 RefSeq:NP_001118228.1
UniGene:Hs.641481 ProteinModelPortal:Q4VXU2 SMR:Q4VXU2
IntAct:Q4VXU2 STRING:Q4VXU2 PhosphoSite:Q4VXU2 DMDM:74754038
PaxDb:Q4VXU2 PRIDE:Q4VXU2 Ensembl:ENST00000217073
Ensembl:ENST00000255136 GeneID:80336 KEGG:hsa:80336 UCSC:uc010ggv.1
GeneCards:GC20P043538 HGNC:HGNC:15797 neXtProt:NX_Q4VXU2
PharmGKB:PA162398552 InParanoid:Q4VXU2 OMA:MNFEMLK ChiTaRS:PABPC1L
GenomeRNAi:80336 NextBio:70904 ArrayExpress:Q4VXU2 Bgee:Q4VXU2
CleanEx:HS_PABPC1L Genevestigator:Q4VXU2 Uniprot:Q4VXU2
Length = 614
Score = 136 (52.9 bits), Expect = 2.1e-14, Sum P(2) = 2.1e-14
Identities = 26/63 (41%), Positives = 41/63 (65%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N+++ ++P + +Q L + F FG++LS KV D + G S+CFGFV++E AQ A+
Sbjct: 192 NIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNS-GHSRCFGFVNFEKHEEAQKAVVH 250
Query: 411 MNG 413
MNG
Sbjct: 251 MNG 253
Score = 126 (49.4 bits), Expect = 2.1e-14, Sum P(2) = 2.1e-14
Identities = 38/152 (25%), Positives = 72/152 (47%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG + +TEA L F + + + +D TR S G ++ +A++A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 77 HNKKTLPGASSPLQVKYA--DGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
N + L G P+++ ++ D L + +FI L ++ + FS +G I +
Sbjct: 73 -NFEMLKG--QPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCK 129
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAING 165
+ + S+G F+ +ET E A A+ +NG
Sbjct: 130 VAC-DEHGSRGFGFVHFETHEAAQQAINTMNG 160
Score = 116 (45.9 bits), Expect = 3.0e-12, Sum P(2) = 3.0e-12
Identities = 25/65 (38%), Positives = 35/65 (53%)
Query: 349 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 408
G NL++ ++ D +L F +G + SAKV + G SK FGFV + SP A A+
Sbjct: 293 GVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAV 350
Query: 409 AMMNG 413
MNG
Sbjct: 351 TEMNG 355
Score = 110 (43.8 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 36/156 (23%), Positives = 71/156 (45%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
+F+ + + L F F + + D+ SRG FV + + A +A+N
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDE--HGSRGFGFVHFETHEAAQQAINTM 158
Query: 77 H-----NKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIK 130
+ ++K G + + A+ LE +++ LP +V E + LFS +G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKML 218
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 166
++++R + S+ F+ +E E+A A+ +NGK
Sbjct: 219 SVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGK 254
>DICTYBASE|DDB_G0290307 [details] [associations]
symbol:DDB_G0290307 "ELAVL1-like protein"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0290307 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000162 eggNOG:NOG256997 RefSeq:XP_635793.1
ProteinModelPortal:Q54G90 EnsemblProtists:DDB0233651 GeneID:8627598
KEGG:ddi:DDB_G0290307 InParanoid:Q54G90 OMA:SATNQCK Uniprot:Q54G90
Length = 459
Score = 139 (54.0 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 30/63 (47%), Positives = 39/63 (61%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
NLFI +P + L + F AFG + S +V VD TG+S+ FGFV ++ ASAQ AI
Sbjct: 100 NLFISFLPATYTSDTLRSIFSAFGEIDSCRVMVDLNTGLSRGFGFVKFKDVASAQYAINS 159
Query: 411 MNG 413
MNG
Sbjct: 160 MNG 162
Score = 116 (45.9 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 24/63 (38%), Positives = 35/63 (55%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N+FI +P EF +L F A+G V+ +K+ +D T S+ G V Y SA NA+
Sbjct: 220 NVFIRGLPIEFDKNQLSELFSAYGEVVESKLLIDITTNASRGQGLVRYIDTQSAINAVKS 279
Query: 411 MNG 413
+NG
Sbjct: 280 LNG 282
Score = 113 (44.8 bits), Expect = 2.2e-14, Sum P(3) = 2.2e-14
Identities = 25/89 (28%), Positives = 52/89 (58%)
Query: 99 ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQAL 157
+++ + +FI LP + ++S LFS YG + + ++L + S+G ++Y + A+
Sbjct: 215 QKISNNVFIRGLPIEFDKNQLSELFSAYGEVVESKLLIDITTNASRGQGLVRYIDTQSAI 274
Query: 158 AALEAINGKHKMEGSSVPLVVKWADTEKE 186
A++++NG ++ PL+V++AD E E
Sbjct: 275 NAVKSLNG-FILQDPEKPLIVRFADNEDE 302
Score = 108 (43.1 bits), Expect = 2.2e-14, Sum P(3) = 2.2e-14
Identities = 31/122 (25%), Positives = 50/122 (40%)
Query: 300 YPMPYPGGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGA--------N 351
YP + + NS G++ + P + PPG N
Sbjct: 324 YPQQQQQQQQQQQQMMNSSGAMMYPFYQNMPTMNSLPNSMIGSSSQPPPGGKNPGTDPTN 383
Query: 352 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 411
L++Y++P + D L F G + S K+ D+ T V + +GFV S A + +AI +
Sbjct: 384 LYVYNLPSDADDSLLYRLFSPCGAIASVKIVRDQTTQVCRGYGFVRMVSLADSYSAINSI 443
Query: 412 NG 413
NG
Sbjct: 444 NG 445
Score = 90 (36.7 bits), Expect = 6.5e-08, Sum P(2) = 6.5e-08
Identities = 28/88 (31%), Positives = 42/88 (47%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
+F+ +P + QL +F + V E ++ D TT ASRG V Q A AV +
Sbjct: 221 VFIRGLPIEFDKNQLSELFSAYGEVVESKLLIDITTNASRGQGLVRYIDTQSAINAVKSL 280
Query: 77 HNKKTLPGASSPLQVKYADGELERLEHK 104
N L PL V++AD E E+ + +
Sbjct: 281 -NGFILQDPEKPLIVRFADNEDEKKQKR 307
Score = 86 (35.3 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 22/81 (27%), Positives = 46/81 (56%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 163
LFI LP + + ++FS +G I +++ + S+G F+K++ A A+ ++
Sbjct: 101 LFISFLPATYTSDTLRSIFSAFGEIDSCRVMVDLNTGLSRGFGFVKFKDVASAQYAINSM 160
Query: 164 NGKHKMEGSSVPLVVKWADTE 184
NG K+E + L+V++A+++
Sbjct: 161 NGA-KVENKT--LLVRFANSD 178
Score = 78 (32.5 bits), Expect = 2.2e-14, Sum P(3) = 2.2e-14
Identities = 22/81 (27%), Positives = 37/81 (45%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
LF+ +P T L ++F F +D ++ D T SRG FV A A+N+
Sbjct: 101 LFISFLPATYTSDTLRSIFSAFGEIDSCRVMVDLNTGLSRGFGFVKFKDVASAQYAINSM 160
Query: 77 HNKKTLPGASSPLQVKYADGE 97
+ K + L V++A+ +
Sbjct: 161 NGAKV---ENKTLLVRFANSD 178
Score = 74 (31.1 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 19/76 (25%), Positives = 42/76 (55%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 163
L++ LP + ++ + LFS G I ++I+R + Q +G F++ + + +A+ +I
Sbjct: 384 LYVYNLPSDADDSLLYRLFSPCGAIASVKIVRDQTTQVCRGYGFVRMVSLADSYSAINSI 443
Query: 164 NGKHKMEGSSVPLVVK 179
NG ++ G ++ + K
Sbjct: 444 NGV-QVGGKTISVSFK 458
>UNIPROTKB|Q15427 [details] [associations]
symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005654
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471121 GO:GO:0000398 EMBL:AL591493 eggNOG:COG0724
HOVERGEN:HBG002295 GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831
EMBL:AL590487 OMA:VSETLLW EMBL:L35013 EMBL:BC004273 EMBL:BC013886
EMBL:BC090883 IPI:IPI00017339 PIR:A54964 RefSeq:NP_005841.1
UniGene:Hs.516160 PDB:1X5T PDB:1X5U PDBsum:1X5T PDBsum:1X5U
ProteinModelPortal:Q15427 SMR:Q15427 IntAct:Q15427
MINT:MINT-1032702 STRING:Q15427 PhosphoSite:Q15427 DMDM:2500587
PaxDb:Q15427 PeptideAtlas:Q15427 PRIDE:Q15427 DNASU:10262
Ensembl:ENST00000271628 Ensembl:ENST00000582851 GeneID:10262
KEGG:hsa:10262 UCSC:uc001etk.2 CTD:10262 GeneCards:GC01M149895
HGNC:HGNC:10771 HPA:HPA028578 MIM:154400 MIM:605593
neXtProt:NX_Q15427 Orphanet:245 PharmGKB:PA35689 InParanoid:Q15427
OrthoDB:EOG4M65JJ PhylomeDB:Q15427 EvolutionaryTrace:Q15427
GenomeRNAi:10262 NextBio:38880 ArrayExpress:Q15427 Bgee:Q15427
CleanEx:HS_SF3B4 Genevestigator:Q15427 GermOnline:ENSG00000143368
Uniprot:Q15427
Length = 424
Score = 209 (78.6 bits), Expect = 2.3e-14, P = 2.3e-14
Identities = 82/302 (27%), Positives = 133/302 (44%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
++VG + + ++E L +F + V ++ KD+ T +G FV S ++AD A+
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 77 HNKKTLPGASSPLQVKYADGELERLE--HKLFIGMLPKNVSEAEVSALFSIYGTIKDL-Q 133
+ K L G P++V A + L+ +FIG L + E + FS +G I +
Sbjct: 75 NMIK-LYG--KPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 134 ILRGSQQ-TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA---DTEKEXXX 189
I+R SKG AF+ + + + + AA+EA+NG++ P+ V +A D++ E
Sbjct: 132 IMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNR---PITVSYAFKKDSKGERHG 188
Query: 190 XXXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQP 249
N L AD H LF P PP +S GL +PP + P
Sbjct: 189 SAAERLLAAQNPLSQADRPH-QLFADAP---PPPSAPNPVVSSLGSGLPPPGMPPPGSFP 244
Query: 250 GFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGML 309
+ PP + A P G + P +G G+G+P G +P P+P G +
Sbjct: 245 P--PVPPPGALPPGIPPAMPPPPMPPGAAGHGPPSAGTPGAGHPG-HGHSHPHPFPPGGM 301
Query: 310 GH 311
H
Sbjct: 302 PH 303
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 139 (54.0 bits), Expect = 2.8e-14, Sum P(2) = 2.8e-14
Identities = 41/152 (26%), Positives = 74/152 (48%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG + TEA L F + + + +D TR S G +V +A++A++
Sbjct: 13 LYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 77 HNKKTLPGASSPLQVKYA--DGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
N + G P+++ ++ D L + +FI L K++ + FS +G I +
Sbjct: 73 -NFDVIKG--KPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAING 165
++ + SKG F+ +ET+E A A+E +NG
Sbjct: 130 VVC-DENGSKGYGFVHFETQEAAERAIEKMNG 160
Score = 122 (48.0 bits), Expect = 2.8e-14, Sum P(2) = 2.8e-14
Identities = 27/63 (42%), Positives = 38/63 (60%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N++I + ++ D+ L + F FG LS KV D++ G SK FGFVS+E AQ A+
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDE 250
Query: 411 MNG 413
MNG
Sbjct: 251 MNG 253
Score = 121 (47.7 bits), Expect = 3.5e-14, Sum P(2) = 3.5e-14
Identities = 26/65 (40%), Positives = 36/65 (55%)
Query: 349 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 408
G NL++ ++ D+ L F FG + SAKV ++ G SK FGFV + SP A A+
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAV 350
Query: 409 AMMNG 413
MNG
Sbjct: 351 TEMNG 355
Score = 117 (46.2 bits), Expect = 0.00096, P = 0.00096
Identities = 26/63 (41%), Positives = 40/63 (63%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N+FI ++ + ++ L + F AFG +LS KV D+ G SK +GFV +E+ +A+ AI
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYGFVHFETQEAAERAIEK 157
Query: 411 MNG 413
MNG
Sbjct: 158 MNG 160
Score = 103 (41.3 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 32/164 (19%), Positives = 74/164 (45%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
+F+ + K + L F F + ++ D+ S+G FV +++ A++A+
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYGFVHFETQEAAERAIEKM 158
Query: 77 H-----NKKTLPGASSPLQVKYAD-GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
+ ++K G + + A+ G + ++I +++ + + LF +G
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPAL 218
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 174
++++ SKG F+ +E E A A++ +NGK ++ G +
Sbjct: 219 SVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGK-ELNGKQI 261
Score = 41 (19.5 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 17/54 (31%), Positives = 21/54 (38%)
Query: 283 PPSGFVGSGYPAVPG--LQYP-------MPYPGGML-GHRP--LNNSPGSVSPA 324
PPSG+ + P YP P P G RP N PG++ PA
Sbjct: 404 PPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPA 457
>UNIPROTKB|F1MWR2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:DAAA02007272 IPI:IPI00717302 RefSeq:NP_001192513.1
UniGene:Bt.3914 ProteinModelPortal:F1MWR2
Ensembl:ENSBTAT00000016577 GeneID:506123 KEGG:bta:506123
NextBio:20867458 ArrayExpress:F1MWR2 Uniprot:F1MWR2
Length = 424
Score = 208 (78.3 bits), Expect = 3.0e-14, P = 3.0e-14
Identities = 82/302 (27%), Positives = 133/302 (44%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
++VG + + ++E L +F + V ++ KD+ T +G FV S ++AD A+
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 77 HNKKTLPGASSPLQVKYADGELERLE--HKLFIGMLPKNVSEAEVSALFSIYGTIKDL-Q 133
+ K L G P++V A + L+ +FIG L + E + FS +G I +
Sbjct: 75 NMIK-LYG--KPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 134 ILRGSQQ-TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA---DTEKEXXX 189
I+R SKG AF+ + + + + AA+EA+NG++ P+ V +A D++ E
Sbjct: 132 IMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNR---PITVSYAFKKDSKGERHG 188
Query: 190 XXXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQP 249
N L AD H LF P PP +S GL +PP + P
Sbjct: 189 SAAERLLAAQNPLSQADRPH-QLFADAP---PPPSAPNPVVSSLGSGLPPPGMPPPGSFP 244
Query: 250 GFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGML 309
+ PP + A P G + P +G G+G+P G +P P+P G +
Sbjct: 245 P--PVPPPGALPPGIPPAMPPPPMPPGAGGHGPPSAGTPGAGHPG-HGHSHPHPFPPGGM 301
Query: 310 GH 311
H
Sbjct: 302 PH 303
>MGI|MGI:109580 [details] [associations]
symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109580 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 CTD:10262
OrthoDB:EOG4M65JJ EMBL:AK047751 EMBL:AK135543 EMBL:BC024418
EMBL:BC026567 EMBL:BC085273 IPI:IPI00154082 RefSeq:NP_694693.1
UniGene:Mm.219671 ProteinModelPortal:Q8QZY9 SMR:Q8QZY9
IntAct:Q8QZY9 STRING:Q8QZY9 PhosphoSite:Q8QZY9 PaxDb:Q8QZY9
PRIDE:Q8QZY9 Ensembl:ENSMUST00000076372 GeneID:107701
KEGG:mmu:107701 UCSC:uc008qme.1 InParanoid:Q8QZY9 OMA:FASISHH
NextBio:359278 Bgee:Q8QZY9 Genevestigator:Q8QZY9 Uniprot:Q8QZY9
Length = 424
Score = 208 (78.3 bits), Expect = 3.0e-14, P = 3.0e-14
Identities = 82/302 (27%), Positives = 133/302 (44%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
++VG + + ++E L +F + V ++ KD+ T +G FV S ++AD A+
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 77 HNKKTLPGASSPLQVKYADGELERLE--HKLFIGMLPKNVSEAEVSALFSIYGTIKDL-Q 133
+ K L G P++V A + L+ +FIG L + E + FS +G I +
Sbjct: 75 NMIK-LYG--KPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 134 ILRGSQQ-TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA---DTEKEXXX 189
I+R SKG AF+ + + + + AA+EA+NG++ P+ V +A D++ E
Sbjct: 132 IMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNR---PITVSYAFKKDSKGERHG 188
Query: 190 XXXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQP 249
N L AD H LF P PP +S GL +PP + P
Sbjct: 189 SAAERLLAAQNPLSQADRPH-QLFADAP---PPPSAPNPVVSSLGSGLPPPGMPPPGSFP 244
Query: 250 GFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGML 309
+ PP + A P G + P +G G+G+P G +P P+P G +
Sbjct: 245 P--PVPPPGALPPGIPPAMPPPPMPPGAGGHGPPAAGTPGAGHPG-HGHSHPHPFPPGGM 301
Query: 310 GH 311
H
Sbjct: 302 PH 303
>RGD|1309667 [details] [associations]
symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA;ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309667 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 OMA:VSETLLW CTD:10262
OrthoDB:EOG4M65JJ EMBL:BC078997 IPI:IPI00371860
RefSeq:NP_001011951.1 UniGene:Rn.116275 ProteinModelPortal:Q6AYL5
SMR:Q6AYL5 STRING:Q6AYL5 PRIDE:Q6AYL5 Ensembl:ENSRNOT00000028758
GeneID:295270 KEGG:rno:295270 UCSC:RGD:1309667 InParanoid:Q6AYL5
NextBio:639268 Genevestigator:Q6AYL5 Uniprot:Q6AYL5
Length = 424
Score = 208 (78.3 bits), Expect = 3.0e-14, P = 3.0e-14
Identities = 82/302 (27%), Positives = 133/302 (44%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
++VG + + ++E L +F + V ++ KD+ T +G FV S ++AD A+
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 77 HNKKTLPGASSPLQVKYADGELERLE--HKLFIGMLPKNVSEAEVSALFSIYGTIKDL-Q 133
+ K L G P++V A + L+ +FIG L + E + FS +G I +
Sbjct: 75 NMIK-LYG--KPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 134 ILRGSQQ-TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA---DTEKEXXX 189
I+R SKG AF+ + + + + AA+EA+NG++ P+ V +A D++ E
Sbjct: 132 IMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNR---PITVSYAFKKDSKGERHG 188
Query: 190 XXXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQP 249
N L AD H LF P PP +S GL +PP + P
Sbjct: 189 SAAERLLAAQNPLSQADRPH-QLFADAP---PPPSAPNPVVSSLGSGLPPPGMPPPGSFP 244
Query: 250 GFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGML 309
+ PP + A P G + P +G G+G+P G +P P+P G +
Sbjct: 245 P--PVPPPGALPPGIPPAMPPPPMPPGAGGHGPPAAGTPGAGHPG-HGHSHPHPFPPGGM 301
Query: 310 GH 311
H
Sbjct: 302 PH 303
>UNIPROTKB|F1SNK9 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AEMK01195641
EMBL:CU407236 Ensembl:ENSSSCT00000005656 Uniprot:F1SNK9
Length = 400
Score = 148 (57.2 bits), Expect = 3.4e-14, Sum P(2) = 3.4e-14
Identities = 48/176 (27%), Positives = 94/176 (53%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
R K+ Q ++ T++ L F+++ +D I+ K + S G FV ++A+KA+
Sbjct: 82 RDKITGNQFREYFTDSSL---FEKWRPLDSEVIVLGKGWQ-SLGYGFVNYIDPKDAEKAI 137
Query: 74 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + + + ++V YA + + L++ LPK +++ E+ LFS YG I
Sbjct: 138 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 194
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+IL Q T S+G F++++ + +A A++ +NG+ K G++ P+ VK+A+ +
Sbjct: 195 RILV-DQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ-KPPGATEPITVKFANNPSQ 248
Score = 129 (50.5 bits), Expect = 5.2e-12, Sum P(2) = 5.2e-12
Identities = 27/84 (32%), Positives = 49/84 (58%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+V +PK MT+ +L +F ++ + I+ D+ T SRG F+ R EA++A+
Sbjct: 167 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 226
Query: 77 HNKKTLPGASSPLQVKYADGELER 100
+ +K PGA+ P+ VK+A+ ++
Sbjct: 227 NGQKP-PGATEPITVKFANNPSQK 249
Score = 128 (50.1 bits), Expect = 7.1e-08, Sum P(2) = 7.1e-08
Identities = 21/64 (32%), Positives = 41/64 (64%)
Query: 350 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 409
ANL++ +P+ +EL F +GR++++++ VD+ TG+S+ GF+ ++ A+ AI
Sbjct: 165 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 224
Query: 410 MMNG 413
+NG
Sbjct: 225 GLNG 228
Score = 105 (42.0 bits), Expect = 3.4e-14, Sum P(2) = 3.4e-14
Identities = 34/120 (28%), Positives = 48/120 (40%)
Query: 296 PGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGAN--LF 353
P +YP P R L+N + +P I G PG +F
Sbjct: 262 PNRRYPGPLAQQAQRFR-LDNLLNMAYGVKSRFSPMTIDGMTSLAGINIPGHPGTGWCIF 320
Query: 354 IYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 413
+Y++ + + L F FG V + KV D T K FGFV+ + A AIA +NG
Sbjct: 321 VYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 380
Score = 66 (28.3 bits), Expect = 7.1e-08, Sum P(2) = 7.1e-08
Identities = 17/64 (26%), Positives = 32/64 (50%)
Query: 74 NACHNKKTLPG-ASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + T+ SSP+ G E + L + LP+N+++ E+ +LF G I+
Sbjct: 23 NTANGPTTINNNCSSPVD----SGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESC 78
Query: 133 QILR 136
+++R
Sbjct: 79 KLVR 82
Score = 64 (27.6 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 10/39 (25%), Positives = 23/39 (58%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTT 52
+ L V +P++MT+ +L ++F ++ +++DK T
Sbjct: 48 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKIT 86
Score = 63 (27.2 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 13/62 (20%), Positives = 33/62 (53%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAI 163
+F+ L + E+ + +F +G + +++++R + KG F+ ++A A+ ++
Sbjct: 319 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 378
Query: 164 NG 165
NG
Sbjct: 379 NG 380
>ZFIN|ZDB-GENE-120215-101 [details] [associations]
symbol:si:dkey-205h23.2 "si:dkey-205h23.2"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
ZFIN:ZDB-GENE-120215-101 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00560000076837 EMBL:CU929433
Ensembl:ENSDART00000151364 Uniprot:I3IS08
Length = 188
Score = 188 (71.2 bits), Expect = 3.5e-14, P = 3.5e-14
Identities = 36/51 (70%), Positives = 39/51 (76%)
Query: 343 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCF 393
Q EGP G NLFIYH+PQEFGD EL F FG V+SAKVFVD+AT SKCF
Sbjct: 138 QREGPEGCNLFIYHLPQEFGDAELMQMFLPFGNVISAKVFVDRATNQSKCF 188
>RGD|1563142 [details] [associations]
symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
GeneTree:ENSGT00640000091232 IPI:IPI00778604
ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
UCSC:RGD:1563142 Uniprot:D3ZAS7
Length = 607
Score = 143 (55.4 bits), Expect = 3.7e-14, Sum P(2) = 3.7e-14
Identities = 38/150 (25%), Positives = 72/150 (48%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG + +TEA L MF + + + +D TR S G ++ +A++A++
Sbjct: 13 LYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 77 HNKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 135
N + + G + + D L R +FI L ++ + FS +G+I +++
Sbjct: 73 -NFEMIKGQPIRIMWSHRDPGLRRSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKVV 131
Query: 136 RGSQQTSKGCAFLKYETKEQALAALEAING 165
++ S+G F+ +ET E A A+ +NG
Sbjct: 132 Y-NEHGSRGFGFVHFETHEAAQKAINTMNG 160
Score = 123 (48.4 bits), Expect = 0.00020, P = 0.00020
Identities = 60/258 (23%), Positives = 108/258 (41%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
++V + M E L +F +F V +++D + SRG F+ +EA KAV+
Sbjct: 193 IYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSNGQ-SRGFGFINFEKHEEAQKAVDHM 251
Query: 77 HNKKT-----LPGAS-------SPLQVKYADGELERLEH----KLFIGMLPKNVSEAEVS 120
+ K+ G + + L+ ++ + ER L++ L ++++ +
Sbjct: 252 NGKEVSGQLLYVGRAQKRAERQNELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDDRLK 311
Query: 121 ALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180
+FS YG I +++ S SKG F+ + + E+A A+ +NG+ + G+ PL V
Sbjct: 312 EVFSTYGVITSAKVMTESSH-SKGFGFVCFSSPEEATKAVTEMNGR--IVGTK-PLYVAL 367
Query: 181 ADTEKEXXXXXXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQY 240
A ++E + + Q P+ + LP + Y +S S MQ
Sbjct: 368 AQRKEERKAILTNQYRRRLSRSVLSSFQQPTSY-LLPAVHQSTTQTM-YYSSASIAPMQP 425
Query: 241 RLPPMQNQP-GFHGIIPP 257
P QP G PP
Sbjct: 426 D-PRWTAQPHGPSSTCPP 442
Score = 119 (46.9 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
Identities = 36/156 (23%), Positives = 72/156 (46%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
+F+ + + L F F + ++ ++ SRG FV + + A KA+N
Sbjct: 101 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYNE--HGSRGFGFVHFETHEAAQKAINTM 158
Query: 77 H-----NKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIK 130
+ ++K G Q + A+ L +++ L ++ E + LFS +G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRQKREAELGARALGFTNIYVKNLRVDMDEQGLQDLFSQFGKTQ 218
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 166
++++R S S+G F+ +E E+A A++ +NGK
Sbjct: 219 SVKVMRDSNGQSRGFGFINFEKHEEAQKAVDHMNGK 254
Score = 116 (45.9 bits), Expect = 3.7e-14, Sum P(2) = 3.7e-14
Identities = 24/65 (36%), Positives = 34/65 (52%)
Query: 349 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 408
G NL++ ++ D L F +G + SAKV + + SK FGFV + SP A A+
Sbjct: 293 GVNLYVKNLDDSINDDRLKEVFSTYGVITSAKVMTESSH--SKGFGFVCFSSPEEATKAV 350
Query: 409 AMMNG 413
MNG
Sbjct: 351 TEMNG 355
Score = 107 (42.7 bits), Expect = 3.1e-13, Sum P(2) = 3.1e-13
Identities = 22/63 (34%), Positives = 37/63 (58%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N+++ ++ + +Q L + F FG+ S KV D + G S+ FGF+++E AQ A+
Sbjct: 192 NIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRD-SNGQSRGFGFINFEKHEEAQKAVDH 250
Query: 411 MNG 413
MNG
Sbjct: 251 MNG 253
>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
symbol:pabpc1a "poly A binding protein,
cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
Length = 634
Score = 138 (53.6 bits), Expect = 4.5e-14, Sum P(2) = 4.5e-14
Identities = 40/150 (26%), Positives = 69/150 (46%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG + +TEA L F + + + +D TR S G +V +A++A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALDTM 72
Query: 77 HNKKTLPGASSPLQVKYADGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 135
N + G + D L + +FI L K++ + FS +G I +++
Sbjct: 73 -NFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 136 RGSQQTSKGCAFLKYETKEQALAALEAING 165
+ SKG F+ +ET E A A+E +NG
Sbjct: 132 C-DENGSKGYGFVHFETHEAAERAIEKMNG 160
Score = 121 (47.7 bits), Expect = 4.5e-14, Sum P(2) = 4.5e-14
Identities = 26/65 (40%), Positives = 36/65 (55%)
Query: 349 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 408
G NL++ ++ D+ L F FG + SAKV ++ G SK FGFV + SP A A+
Sbjct: 293 GVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAV 350
Query: 409 AMMNG 413
MNG
Sbjct: 351 TEMNG 355
Score = 112 (44.5 bits), Expect = 3.9e-13, Sum P(2) = 3.9e-13
Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N++I + ++ D++L F +G LS +V D + G SK FGFVS+E AQ A+
Sbjct: 192 NVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDDS-GKSKGFGFVSFERHEDAQRAVDE 250
Query: 411 MNG 413
MNG
Sbjct: 251 MNG 253
Score = 110 (43.8 bits), Expect = 4.9e-11, Sum P(2) = 4.9e-11
Identities = 34/164 (20%), Positives = 74/164 (45%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
+F+ + K + L F F + ++ D+ S+G FV + + A++A+
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYGFVHFETHEAAERAIEKM 158
Query: 77 H-----NKKTLPGASSPLQVKYAD-GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
+ ++K G + + A+ G + ++I +++ + ++ +F YG
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAEMGARAKEFTNVYIKNFGEDMDDEKLKEIFCKYGPAL 218
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 174
++++ SKG F+ +E E A A++ +NGK +M G V
Sbjct: 219 SIRVMTDDSGKSKGFGFVSFERHEDAQRAVDEMNGK-EMNGKQV 261
>UNIPROTKB|P20965 [details] [associations]
symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
Length = 633
Score = 139 (54.0 bits), Expect = 5.6e-14, Sum P(2) = 5.6e-14
Identities = 39/150 (26%), Positives = 71/150 (47%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG + + +TEA L F + + + +D TR S G +V +A++A++
Sbjct: 13 LYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 77 HNKKTLPGASSPLQVKYADGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 135
N + G + D L + +FI L K++ + FS +G I +++
Sbjct: 73 -NFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVV 131
Query: 136 RGSQQTSKGCAFLKYETKEQALAALEAING 165
+ SKG F+ +ET+E A A++ +NG
Sbjct: 132 C-DENGSKGYGFVHFETQEAAERAIDKMNG 160
Score = 119 (46.9 bits), Expect = 5.6e-14, Sum P(2) = 5.6e-14
Identities = 26/65 (40%), Positives = 36/65 (55%)
Query: 349 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 408
G NL++ ++ D+ L F FG + SAKV ++ G SK FGFV + SP A A+
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAV 350
Query: 409 AMMNG 413
MNG
Sbjct: 351 TEMNG 355
Score = 114 (45.2 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
Identities = 26/63 (41%), Positives = 34/63 (53%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N++I + + D+ L F +G LS KV D G SK FGFVS+E AQ A+
Sbjct: 192 NVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDD-NGKSKGFGFVSFERHEDAQKAVDE 250
Query: 411 MNG 413
MNG
Sbjct: 251 MNG 253
Score = 109 (43.4 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 34/164 (20%), Positives = 75/164 (45%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
+F+ + K + L F F + ++ D+ S+G FV +++ A++A++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYGFVHFETQEAAERAIDKM 158
Query: 77 H-----NKKTLPGASSPLQVKYAD-GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
+ ++K G + + A+ G + ++I ++++ + +F YG
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPAL 218
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 174
++++ SKG F+ +E E A A++ +NGK M G S+
Sbjct: 219 SVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKD-MNGKSM 261
Score = 44 (20.5 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 18/54 (33%), Positives = 25/54 (46%)
Query: 277 PRNY---AMPPSGFVGSGYPAVPG-LQYPMPYPGGML-GHRP--LNNSPGSVSP 323
P +Y A+PP+ + YP PG + P P G RP N PG++ P
Sbjct: 403 PSSYFMAAIPPAQNRAAYYP--PGQIAQLRPSPRWTAQGARPHPFQNMPGAIRP 454
>UNIPROTKB|Q6IP09 [details] [associations]
symbol:pabpc1-b "Polyadenylate-binding protein 1-B"
species:8355 "Xenopus laevis" [GO:0005844 "polysome" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043621
"protein self-association" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0005844
GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC072110 EMBL:BC108462 RefSeq:NP_001085069.1
UniGene:Xl.60751 ProteinModelPortal:Q6IP09 SMR:Q6IP09 PRIDE:Q6IP09
GeneID:432140 KEGG:xla:432140 CTD:432140 Xenbase:XB-GENE-6255999
Uniprot:Q6IP09
Length = 633
Score = 138 (53.6 bits), Expect = 5.7e-14, Sum P(2) = 5.7e-14
Identities = 40/152 (26%), Positives = 75/152 (49%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG + +TEA L F + + + +D TR S G +V +A++A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 77 HNKKTLPGASSPLQVKYA--DGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
N + G P+++ ++ D L + +FI L K++ + FS +G I +
Sbjct: 73 -NFDVIKG--KPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAING 165
++ + SKG F+ +ET+E A A++ +NG
Sbjct: 130 VVC-DENGSKGYGFVHFETQEAAERAIDKMNG 160
Score = 120 (47.3 bits), Expect = 5.7e-14, Sum P(2) = 5.7e-14
Identities = 26/65 (40%), Positives = 36/65 (55%)
Query: 349 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 408
G NL++ ++ D+ L F FG + SAKV ++ G SK FGFV + SP A A+
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFTPFGSITSAKVMMEG--GRSKGFGFVCFSSPEEATKAV 350
Query: 409 AMMNG 413
MNG
Sbjct: 351 TEMNG 355
Score = 108 (43.1 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 25/63 (39%), Positives = 35/63 (55%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N++I + ++ D+ L F +G LS KV D G S+ FGFVS+E AQ A+
Sbjct: 192 NVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDH-GKSRGFGFVSFERHEDAQKAVDD 250
Query: 411 MNG 413
MNG
Sbjct: 251 MNG 253
Score = 99 (39.9 bits), Expect = 8.7e-10, Sum P(2) = 8.7e-10
Identities = 31/164 (18%), Positives = 74/164 (45%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
+F+ + K + L F F + ++ D+ S+G FV +++ A++A++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYGFVHFETQEAAERAIDKM 158
Query: 77 H-----NKKTLPGASSPLQVKYAD-GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
+ ++K G + + A+ G + ++I +++ + + F YG
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAAL 218
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 174
++++ S+G F+ +E E A A++ +NGK + G ++
Sbjct: 219 SVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMNGKD-LNGKAI 261
>RGD|1310759 [details] [associations]
symbol:Pabpc2 "poly(A) binding protein, cytoplasmic 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1310759
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:CH473974 GeneTree:ENSGT00640000091232 IPI:IPI00200243
RefSeq:NP_001099621.1 UniGene:Rn.127161 Ensembl:ENSRNOT00000019467
GeneID:291615 KEGG:rno:291615 UCSC:RGD:1310759 CTD:18459
OMA:VSEMNGR OrthoDB:EOG4BK55N NextBio:632859 Uniprot:D4A233
Length = 630
Score = 135 (52.6 bits), Expect = 6.0e-14, Sum P(2) = 6.0e-14
Identities = 42/152 (27%), Positives = 73/152 (48%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG + +TEA L F + + + +D TR S G V +A++A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDTM 72
Query: 77 HNKKTLPGASSPLQVKYA--DGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
N + G P+++ ++ D L R +FI L K + + FS +G I +
Sbjct: 73 -NFDVIKG--KPVRIMWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILSCK 129
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAING 165
++ + SKG F+ +ET+E A A+E +NG
Sbjct: 130 VVC-DENGSKGHGFVHFETEEAAERAIEKMNG 160
Score = 123 (48.4 bits), Expect = 6.0e-14, Sum P(2) = 6.0e-14
Identities = 28/63 (44%), Positives = 36/63 (57%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N++I + D+ L F FG+VLS KV D+ G SK FGFVS+E AQ A+
Sbjct: 192 NVYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTDEG-GKSKGFGFVSFERHEDAQKAVDE 250
Query: 411 MNG 413
MNG
Sbjct: 251 MNG 253
Score = 116 (45.9 bits), Expect = 3.2e-13, Sum P(2) = 3.2e-13
Identities = 25/65 (38%), Positives = 35/65 (53%)
Query: 349 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 408
G NL++ ++ D+ L F FG + S KV + G SK FGFV + SP A A+
Sbjct: 293 GINLYVKNLDDGIDDERLQKEFSPFGTITSTKVMTEG--GRSKGFGFVCFSSPEEATKAV 350
Query: 409 AMMNG 413
+ MNG
Sbjct: 351 SEMNG 355
Score = 98 (39.6 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 32/164 (19%), Positives = 73/164 (44%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
+F+ + K + L F F + ++ D+ S+G FV + + A++A+
Sbjct: 101 VFIKNLNKTIDNKALYDTFSAFGNILSCKVVCDEN--GSKGHGFVHFETEEAAERAIEKM 158
Query: 77 H-----NKKTLPGASSPLQVKYAD-GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
+ ++K G + + A+ G + ++I + + ++ LF +G +
Sbjct: 159 NGMLLNDRKVFVGQFKSRKEREAELGTRTKEFTNVYIKNFGDRMDDKTLNGLFGRFGQVL 218
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 174
++++ SKG F+ +E E A A++ +NGK ++ G +
Sbjct: 219 SVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNGK-ELNGKHI 261
>UNIPROTKB|Q6DEY7 [details] [associations]
symbol:epabp "Embryonic polyadenylate-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
evidence=ISS] [GO:0043009 "chordate embryonic development"
evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
Uniprot:Q6DEY7
Length = 629
Score = 130 (50.8 bits), Expect = 8.3e-14, Sum P(2) = 8.3e-14
Identities = 37/152 (24%), Positives = 76/152 (50%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG + +TEA L F + + + +D TR S G ++ +A++A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72
Query: 77 HNKKTLPGASSPLQVKYA--DGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
N + + G P+++ ++ D L + +FI L +++ + FS +G I +
Sbjct: 73 -NFEVIKGR--PIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCK 129
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAING 165
++ + S+G F+ +ET+E A A++ +NG
Sbjct: 130 VVC-DEHGSRGYGFVHFETQEAANRAIQTMNG 160
Score = 127 (49.8 bits), Expect = 8.3e-14, Sum P(2) = 8.3e-14
Identities = 27/63 (42%), Positives = 39/63 (61%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N++I + ++ D+ L F AFG LS KV +D TG S+ FGFV+Y + AQ A++
Sbjct: 192 NVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-TGRSRGFGFVNYGNHEEAQKAVSE 250
Query: 411 MNG 413
MNG
Sbjct: 251 MNG 253
Score = 115 (45.5 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 25/65 (38%), Positives = 34/65 (52%)
Query: 349 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 408
G NL++ ++ D L F +G + SAKV + G SK FGFV + SP A A+
Sbjct: 293 GVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAV 350
Query: 409 AMMNG 413
MNG
Sbjct: 351 TEMNG 355
Score = 93 (37.8 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 29/156 (18%), Positives = 70/156 (44%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
+F+ + + + L F F + ++ D+ SRG FV +++ A++A+
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDE--HGSRGYGFVHFETQEAANRAIQTM 158
Query: 77 H-----NKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIK 130
+ ++K G + + + + +E ++I +++ + + +FS +G
Sbjct: 159 NGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTL 218
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 166
++++ S+G F+ Y E+A A+ +NGK
Sbjct: 219 SVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMNGK 254
>UNIPROTKB|D4AC21 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
ArrayExpress:D4AC21 Uniprot:D4AC21
Length = 588
Score = 131 (51.2 bits), Expect = 8.6e-14, Sum P(2) = 8.6e-14
Identities = 40/164 (24%), Positives = 76/164 (46%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
+F+ + K + L F F + ++ D+ S+G FV +++ A+KA+
Sbjct: 30 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYAFVHFETQEAANKAIEKM 87
Query: 77 H-----NKKTLPGASSPLQVKYAD-GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
+ ++K G + + A+ G + ++I + V + + LFS +G
Sbjct: 88 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTL 147
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 174
++++R SKG F+ YE E A A+E +NGK +M G S+
Sbjct: 148 SVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGK-EMSGKSI 190
Score = 126 (49.4 bits), Expect = 8.9e-05, P = 8.9e-05
Identities = 28/63 (44%), Positives = 36/63 (57%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N++I + +E D+ L F FG+ LS KV D +G SK FGFVSYE A A+
Sbjct: 121 NVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRD-CSGKSKGFGFVSYEKHEDANKAVEE 179
Query: 411 MNG 413
MNG
Sbjct: 180 MNG 182
Score = 125 (49.1 bits), Expect = 8.6e-14, Sum P(2) = 8.6e-14
Identities = 27/65 (41%), Positives = 37/65 (56%)
Query: 349 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 408
G NL+I ++ D++L F FG + SAKV ++ G SK FGFV + SP A A+
Sbjct: 222 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAV 279
Query: 409 AMMNG 413
MNG
Sbjct: 280 TEMNG 284
>UNIPROTKB|A4QUF0 [details] [associations]
symbol:PAB1 "Polyadenylate-binding protein, cytoplasmic and
nuclear" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
EMBL:CM001233 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043581 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
OrthoDB:EOG4QJVWJ RefSeq:XP_003712237.1 ProteinModelPortal:A4QUF0
SMR:A4QUF0 STRING:A4QUF0 EnsemblFungi:MGG_09505T0 GeneID:2680542
KEGG:mgr:MGG_09505 Uniprot:A4QUF0
Length = 762
Score = 155 (59.6 bits), Expect = 8.6e-14, Sum P(2) = 8.6e-14
Identities = 39/150 (26%), Positives = 69/150 (46%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG++ +TEA L +F + V + + +D TR S G +V + + +KA+
Sbjct: 63 LYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEEL 122
Query: 77 HNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 135
N + G + D L + + +FI L + + F+ +G I ++
Sbjct: 123 -NYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVA 181
Query: 136 RGSQQTSKGCAFLKYETKEQALAALEAING 165
+ SKG F+ YET E A A++ +NG
Sbjct: 182 QDENGNSKGYGFVHYETDEAASQAIKHVNG 211
Score = 102 (41.0 bits), Expect = 8.6e-14, Sum P(2) = 8.6e-14
Identities = 21/62 (33%), Positives = 35/62 (56%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N+++ +I E D E F+ +G V S+ + D+ TG S+ FGFV++ S A A+
Sbjct: 243 NIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQE 302
Query: 411 MN 412
+N
Sbjct: 303 LN 304
Score = 81 (33.6 bits), Expect = 2.8e-05, Sum P(3) = 2.8e-05
Identities = 33/140 (23%), Positives = 63/140 (45%)
Query: 35 FKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKA---VNAC--HNKKTLPGASSPL 89
F F + + +D+ S+G FV + + A +A VN + KK G P
Sbjct: 169 FAAFGNILSCKVAQDENGN-SKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPK 227
Query: 90 QVKYAD-GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQT--SKGCA 146
+ + + E++ +++ + V++ E LF YG + + R Q+T S+G
Sbjct: 228 KDRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLAR-DQETGKSRGFG 286
Query: 147 FLKYETKEQALAALEAINGK 166
F+ + + E A A++ +N K
Sbjct: 287 FVNFTSHEDASKAVQELNEK 306
Score = 77 (32.2 bits), Expect = 1.7e-13, Sum P(3) = 1.7e-13
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 349 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKAT 387
G NL+I ++ E D++L F FG + SAKV D T
Sbjct: 345 GVNLYIKNLDDEVDDEKLRQLFSEFGPITSAKVMRDSIT 383
Score = 69 (29.3 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 33/122 (27%), Positives = 42/122 (34%)
Query: 210 PSLFGALPMGYAPPYNGYGYQASG---SYGLMQYRLP----PMQNQPGFHGIIPPVNQGN 262
P G P G+A G G G YGL P P N P F + + Q +
Sbjct: 538 PGRPGQFPAGFAAQQGGRGAMPQGIPPMYGLPGQFPPQGPFPQPNNPQFLAAMQQIQQ-S 596
Query: 263 AMRGASPDLSSNMGPRNYAMPPSGFVG-SGYPAVPG---LQYPMPYPGGMLGHRPLNNSP 318
A+ G + GP +P G G +G P P Q P G G P
Sbjct: 597 ALAGGRGG-PAGRGPMQGGVPVPGMPGGAGLPGFPPNARQQGPGAGRGAAAGRAPAGAPA 655
Query: 319 GS 320
G+
Sbjct: 656 GA 657
Score = 64 (27.6 bits), Expect = 7.4e-10, Sum P(2) = 7.4e-10
Identities = 37/125 (29%), Positives = 48/125 (38%)
Query: 214 GALPMGYAPPYN-GYGYQAS-GSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASPDL 271
G +PM P G+ A G G M +PPM PG PP QG + +P
Sbjct: 532 GGMPMQPGRPGQFPAGFAAQQGGRGAMPQGIPPMYGLPGQ---FPP--QGPFPQPNNPQF 586
Query: 272 SSNMGP-RNYAMPPS--GFVGSGYPAVPGLQYP-MPYPGGMLGHRP--LNNSPGSVSPAV 325
+ M + A+ G G G P G+ P MP G+ G P PG+ A
Sbjct: 587 LAAMQQIQQSALAGGRGGPAGRG-PMQGGVPVPGMPGGAGLPGFPPNARQQGPGAGRGAA 645
Query: 326 ANSNP 330
A P
Sbjct: 646 AGRAP 650
Score = 62 (26.9 bits), Expect = 1.7e-13, Sum P(3) = 1.7e-13
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 388 GVSKCFGFVSYESPASAQNAIAMMN 412
G SK FGFV + +P A A+A MN
Sbjct: 430 GKSKGFGFVCFANPDDATKAVAEMN 454
Score = 46 (21.3 bits), Expect = 5.3e-08, Sum P(2) = 5.3e-08
Identities = 14/48 (29%), Positives = 21/48 (43%)
Query: 203 PNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPG 250
PNA Q P G AP G + +G+ +Q +L + + PG
Sbjct: 631 PNARQQGPGAGRGAAAGRAPAGAPAGARGAGAPEGLQGQLAAVADNPG 678
Score = 40 (19.1 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 13/32 (40%), Positives = 14/32 (43%)
Query: 282 MPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRP 313
MPP+G G YP Q MP G G P
Sbjct: 519 MPPAGGRGMPYP-----QGGMPMQPGRPGQFP 545
>RGD|1559517 [details] [associations]
symbol:Pabpc4l "poly(A) binding protein, cytoplasmic 4-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1559517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
TIGRFAMs:TIGR01628 OrthoDB:EOG4M398T GeneTree:ENSGT00640000091232
CTD:132430 EMBL:CH474091 IPI:IPI00367682 RefSeq:NP_001099899.1
UniGene:Rn.218503 Ensembl:ENSRNOT00000017012 GeneID:295010
KEGG:rno:295010 UCSC:RGD:1559517 NextBio:638845 Uniprot:D3ZGA4
Length = 370
Score = 129 (50.5 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 27/63 (42%), Positives = 41/63 (65%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N++I + + D+ L + F +G+ LS KV D A+G SK FGFVS++S +A+NA+
Sbjct: 191 NVYIKNFGDDMDDESLRSVFSKYGQTLSVKVMKD-ASGKSKRFGFVSFDSHKAAKNAVED 249
Query: 411 MNG 413
MNG
Sbjct: 250 MNG 252
Score = 119 (46.9 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 41/151 (27%), Positives = 68/151 (45%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG + + +TE L F V + I +D + S G +V +A KA+
Sbjct: 12 LYVGDLHEDVTEDLLFRKFNTVGPVLSIRICRDLISHRSLGYGYVNFLQVGDAQKALETM 71
Query: 77 HNKKTLPGASSPLQVKYADGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 135
N + G S L D L + +FI L K++ + FS +G I +++
Sbjct: 72 -NFDLIKGKSIRLMWSQRDACLRKSGIGNVFIKNLDKSIDNKTLYEHFSPFGKIMSSKVM 130
Query: 136 RGSQQTSKGCAFLKYETKEQALAALEAINGK 166
++ SKG F+ Y+ + A A+E +NGK
Sbjct: 131 T-DEEGSKGYGFVHYQDQRAADRAIEEMNGK 160
Score = 101 (40.6 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 24/71 (33%), Positives = 35/71 (49%)
Query: 343 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 402
+I A L+I ++ D+ L F FG + KV + G SK FG + + SP
Sbjct: 286 RIRARQAAKLYIKNLDDTIDDETLRKEFSVFGSICRVKVMQE--AGQSKGFGLICFFSPE 343
Query: 403 SAQNAIAMMNG 413
+A A+A MNG
Sbjct: 344 AAAKAMAEMNG 354
Score = 98 (39.6 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 35/164 (21%), Positives = 73/164 (44%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
+F+ + K + L F F + ++ D+ S+G FV ++ AD+A+
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSPFGKIMSSKVMTDE--EGSKGYGFVHYQDQRAADRAIEEM 157
Query: 77 HNKKTLPGASSPLQVKYA-DGELERLEHKL-FIGMLPKN----VSEAEVSALFSIYGTIK 130
+ K + K D E E E F + KN + + + ++FS YG
Sbjct: 158 NGKLLRDSTLFVARFKSRKDREAELREKPAEFTNVYIKNFGDDMDDESLRSVFSKYGQTL 217
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 174
+++++ + SK F+ +++ + A A+E +NG+ + G ++
Sbjct: 218 SVKVMKDASGKSKRFGFVSFDSHKAAKNAVEDMNGRD-INGQTI 260
>UNIPROTKB|E2R5T2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:AAEX03011046 EMBL:AAEX03011045 RefSeq:XP_540295.3
ProteinModelPortal:E2R5T2 Ensembl:ENSCAFT00000018450 GeneID:483177
KEGG:cfa:483177 NextBio:20857615 Uniprot:E2R5T2
Length = 424
Score = 202 (76.2 bits), Expect = 1.5e-13, P = 1.5e-13
Identities = 81/302 (26%), Positives = 132/302 (43%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
++VG + + ++E L +F + V ++ KD+ T +G FV S ++AD A+
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 77 HNKKTLPGASSPLQVKYADGELERLE--HKLFIGMLPKNVSEAEVSALFSIYGTIKDL-Q 133
+ K L G P++V A + L+ +FIG L + E + FS +G I +
Sbjct: 75 NMIK-LYG--KPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 134 ILRGSQQ-TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA---DTEKEXXX 189
I+R SKG AF+ + + + + AA+EA+NG++ P+ V +A D++ E
Sbjct: 132 IMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNR---PITVSYAFKKDSKGERHG 188
Query: 190 XXXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQP 249
N L AD H LF P PP +S GL +PP + P
Sbjct: 189 SAAERLLAAQNPLSQADRPH-QLFADAP---PPPSAPNPVVSSLGSGLPPPGMPPPGSFP 244
Query: 250 GFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGML 309
+ PP + A P G + P +G G+G+P G +P P+P +
Sbjct: 245 P--PVPPPGALPPGIPPAMPPPPMPPGAGGHGPPSAGTPGAGHPG-HGHSHPHPFPPSGM 301
Query: 310 GH 311
H
Sbjct: 302 PH 303
>UNIPROTKB|E9PSH0 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006376 "mRNA splice
site selection" evidence=IEA] [GO:0007286 "spermatid development"
evidence=IEA] [GO:0031369 "translation initiation factor binding"
evidence=IEA] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0007286 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0003723 EMBL:AC090559
HGNC:HGNC:2549 ChiTaRS:CELF1 GO:GO:0006376 IPI:IPI00984001
ProteinModelPortal:E9PSH0 SMR:E9PSH0 Ensembl:ENST00000530151
ArrayExpress:E9PSH0 Bgee:E9PSH0 Uniprot:E9PSH0
Length = 95
Score = 182 (69.1 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 34/80 (42%), Positives = 54/80 (67%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRA--SRGCCFVICPSRQEADKA 72
+K+FVGQVP+ +E L +F+++ V E+N+++D++ S+GCCFV +R+ A +A
Sbjct: 16 IKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 75
Query: 73 VNACHNKKTLPGASSPLQVK 92
NA HN K LPG P+Q+K
Sbjct: 76 QNALHNMKVLPGMHHPIQMK 95
Score = 130 (50.8 bits), Expect = 7.8e-08, P = 7.8e-08
Identities = 26/79 (32%), Positives = 45/79 (56%)
Query: 104 KLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQT---SKGCAFLKYETKEQALAAL 160
K+F+G +P+ SE ++ LF YG + ++ +LR Q SKGC F+ + T++ AL A
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 161 EAINGKHKMEGSSVPLVVK 179
A++ + G P+ +K
Sbjct: 77 NALHNMKVLPGMHHPIQMK 95
>GENEDB_PFALCIPARUM|PFL1170w [details] [associations]
symbol:PFL1170w "polyadenylate-binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 159 (61.0 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
Identities = 40/150 (26%), Positives = 72/150 (48%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG + + +TEA L +F V + + +D TR S G +V + +A++A++
Sbjct: 18 LYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 77 HNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 135
N + G + L + D L + +F+ L K++ + FS++G I ++
Sbjct: 78 -NYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKSIDNKALFDTFSMFGNILSCKVA 136
Query: 136 RGSQQTSKGCAFLKYETKEQALAALEAING 165
SK F+ YE +E A A+E +NG
Sbjct: 137 TDEFGKSKSYGFVHYEDEESAKEAIEKVNG 166
Score = 119 (46.9 bits), Expect = 0.00087, P = 0.00087
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N+F+ ++ + ++ L + F FG +LS KV D+ G SK +GFV YE SA+ AI
Sbjct: 105 NIFVKNLDKSIDNKALFDTFSMFGNILSCKVATDEF-GKSKSYGFVHYEDEESAKEAIEK 163
Query: 411 MNG 413
+NG
Sbjct: 164 VNG 166
Score = 96 (38.9 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
Identities = 24/64 (37%), Positives = 33/64 (51%)
Query: 349 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 408
G NL+I ++ D L F+ FG + SAKV D+ SK FGFV + S A A+
Sbjct: 449 GVNLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQ-SKGFGFVCFASQEEANKAV 507
Query: 409 AMMN 412
M+
Sbjct: 508 TEMH 511
Score = 90 (36.7 bits), Expect = 6.8e-06, Sum P(2) = 6.8e-06
Identities = 35/154 (22%), Positives = 65/154 (42%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
+FV + K + L F F + + D+ + S+ FV + A +A+
Sbjct: 106 IFVKNLDKSIDNKALFDTFSMFGNILSCKVATDEFGK-SKSYGFVHYEDEESAKEAIEKV 164
Query: 77 HNKKTLPGASS----PLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
+ + G+ + P K + L++ P +V+E + LF+ YG I +
Sbjct: 165 NGVQL--GSKNVYVGPFIKKSERATNDTKFTNLYVKNFPDSVTETHLRQLFNPYGEITSM 222
Query: 133 QILRGSQQTSKGCAFLKYETKEQALAALEAINGK 166
I++ + K C F+ Y E A A++ +NGK
Sbjct: 223 -IVKMDNKNRKFC-FINYADAESAKNAMDNLNGK 254
Score = 78 (32.5 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 18/63 (28%), Positives = 32/63 (50%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
NL++ + P + L F +G + S V +D ++ F F++Y SA+NA+
Sbjct: 194 NLYVKNFPDSVTETHLRQLFNPYGEITSMIVKMDNK---NRKFCFINYADAESAKNAMDN 250
Query: 411 MNG 413
+NG
Sbjct: 251 LNG 253
>UNIPROTKB|Q8I5H4 [details] [associations]
symbol:PFL1170w "Polyadenylate-binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 159 (61.0 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
Identities = 40/150 (26%), Positives = 72/150 (48%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG + + +TEA L +F V + + +D TR S G +V + +A++A++
Sbjct: 18 LYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDTL 77
Query: 77 HNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 135
N + G + L + D L + +F+ L K++ + FS++G I ++
Sbjct: 78 -NYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKSIDNKALFDTFSMFGNILSCKVA 136
Query: 136 RGSQQTSKGCAFLKYETKEQALAALEAING 165
SK F+ YE +E A A+E +NG
Sbjct: 137 TDEFGKSKSYGFVHYEDEESAKEAIEKVNG 166
Score = 119 (46.9 bits), Expect = 0.00087, P = 0.00087
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N+F+ ++ + ++ L + F FG +LS KV D+ G SK +GFV YE SA+ AI
Sbjct: 105 NIFVKNLDKSIDNKALFDTFSMFGNILSCKVATDEF-GKSKSYGFVHYEDEESAKEAIEK 163
Query: 411 MNG 413
+NG
Sbjct: 164 VNG 166
Score = 96 (38.9 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
Identities = 24/64 (37%), Positives = 33/64 (51%)
Query: 349 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 408
G NL+I ++ D L F+ FG + SAKV D+ SK FGFV + S A A+
Sbjct: 449 GVNLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQ-SKGFGFVCFASQEEANKAV 507
Query: 409 AMMN 412
M+
Sbjct: 508 TEMH 511
Score = 90 (36.7 bits), Expect = 6.8e-06, Sum P(2) = 6.8e-06
Identities = 35/154 (22%), Positives = 65/154 (42%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
+FV + K + L F F + + D+ + S+ FV + A +A+
Sbjct: 106 IFVKNLDKSIDNKALFDTFSMFGNILSCKVATDEFGK-SKSYGFVHYEDEESAKEAIEKV 164
Query: 77 HNKKTLPGASS----PLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
+ + G+ + P K + L++ P +V+E + LF+ YG I +
Sbjct: 165 NGVQL--GSKNVYVGPFIKKSERATNDTKFTNLYVKNFPDSVTETHLRQLFNPYGEITSM 222
Query: 133 QILRGSQQTSKGCAFLKYETKEQALAALEAINGK 166
I++ + K C F+ Y E A A++ +NGK
Sbjct: 223 -IVKMDNKNRKFC-FINYADAESAKNAMDNLNGK 254
Score = 78 (32.5 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 18/63 (28%), Positives = 32/63 (50%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
NL++ + P + L F +G + S V +D ++ F F++Y SA+NA+
Sbjct: 194 NLYVKNFPDSVTETHLRQLFNPYGEITSMIVKMDNK---NRKFCFINYADAESAKNAMDN 250
Query: 411 MNG 413
+NG
Sbjct: 251 LNG 253
>UNIPROTKB|H0Y5F5 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000421687 Uniprot:H0Y5F5
Length = 550
Score = 127 (49.8 bits), Expect = 2.0e-13, Sum P(2) = 2.0e-13
Identities = 38/156 (24%), Positives = 71/156 (45%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
+F+ + K + L F F + ++ D+ S+G FV +++ ADKA+
Sbjct: 3 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYAFVHFETQEAADKAIEKM 60
Query: 77 H-----NKKTLPGASSPLQVKYAD-GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
+ ++K G + + A+ G + ++I + V + + LFS +G
Sbjct: 61 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 120
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 166
++++R SKG F+ YE E A A+E +NGK
Sbjct: 121 SVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGK 156
Score = 125 (49.1 bits), Expect = 2.0e-13, Sum P(2) = 2.0e-13
Identities = 27/65 (41%), Positives = 37/65 (56%)
Query: 349 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 408
G NL+I ++ D++L F FG + SAKV ++ G SK FGFV + SP A A+
Sbjct: 195 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAV 252
Query: 409 AMMNG 413
MNG
Sbjct: 253 TEMNG 257
Score = 124 (48.7 bits), Expect = 0.00013, P = 0.00013
Identities = 28/63 (44%), Positives = 35/63 (55%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N++I + +E D+ L F FG+ LS KV D G SK FGFVSYE A A+
Sbjct: 94 NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEE 152
Query: 411 MNG 413
MNG
Sbjct: 153 MNG 155
>ZFIN|ZDB-GENE-030131-5836 [details] [associations]
symbol:pabpc1l "poly(A) binding protein,
cytoplasmic 1-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-5836 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 CTD:80336
HSSP:P11940 EMBL:BC044513 IPI:IPI00863260 RefSeq:NP_956133.1
UniGene:Dr.14309 ProteinModelPortal:Q803E7 SMR:Q803E7 PRIDE:Q803E7
GeneID:327625 KEGG:dre:327625 NextBio:20810113 ArrayExpress:Q803E7
Bgee:Q803E7 Uniprot:Q803E7
Length = 620
Score = 132 (51.5 bits), Expect = 2.0e-13, Sum P(2) = 2.0e-13
Identities = 38/152 (25%), Positives = 75/152 (49%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG + +TEA L F + + + +D TR S G ++ +A+ A++
Sbjct: 13 LYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALDTM 72
Query: 77 HNKKTLPGASSPLQVKYA--DGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
N + + G P+++ ++ D L + +FI + +++ + FS +G I +
Sbjct: 73 -NYEVIKGR--PIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAFGNILSCK 129
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAING 165
++ + SKG F+ +ET+E A A+E +NG
Sbjct: 130 VVC-DENGSKGYGFVHFETQEAANRAIETMNG 160
Score = 121 (47.7 bits), Expect = 2.0e-13, Sum P(2) = 2.0e-13
Identities = 26/71 (36%), Positives = 39/71 (54%)
Query: 343 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPA 402
+I+ G NL++ ++ D++L F +G + SAKV D G S+ FGFV + SP
Sbjct: 287 RIQRYQGVNLYVKNLDDSIDDEKLRKEFAPYGTITSAKVMTDG--GHSRGFGFVCFSSPE 344
Query: 403 SAQNAIAMMNG 413
A A+ MNG
Sbjct: 345 EATKAVTEMNG 355
Score = 104 (41.7 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 22/63 (34%), Positives = 37/63 (58%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N++I + ++ ++L N F FG+ LS V D+ G S+ FGFV++ + A+ A+
Sbjct: 192 NVYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDER-GRSRGFGFVNFVNHGDARRAVTE 250
Query: 411 MNG 413
MNG
Sbjct: 251 MNG 253
Score = 76 (31.8 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 26/156 (16%), Positives = 69/156 (44%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
+F+ + + + L F F + ++ D+ S+G FV +++ A++A+
Sbjct: 101 IFIKNMDESIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYGFVHFETQEAANRAIETM 158
Query: 77 H-----NKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIK 130
+ ++K G + + A+ + +E ++I +++ ++ +F+ +G
Sbjct: 159 NGMLLNDRKVFVGHFKSRKEREAEMGAKAVEFTNVYIKNFGEDIDSEKLKNIFTEFGKTL 218
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 166
+ ++ + S+G F+ + A A+ +NGK
Sbjct: 219 SVCVMTDERGRSRGFGFVNFVNHGDARRAVTEMNGK 254
>UNIPROTKB|E1BWJ7 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 GeneTree:ENSGT00640000091232
EMBL:AADN02019326 EMBL:AADN02019327 IPI:IPI00570679
RefSeq:XP_417367.2 ProteinModelPortal:E1BWJ7
Ensembl:ENSGALT00000006565 GeneID:419189 KEGG:gga:419189
OMA:QTISARV NextBio:20822287 Uniprot:E1BWJ7
Length = 632
Score = 128 (50.1 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 28/63 (44%), Positives = 37/63 (58%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N++I + + D L F FG+ LS KV +D TG SK FGFV++E AQ A+A
Sbjct: 192 NVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDH-TGRSKGFGFVNFEKHEEAQKAVAD 250
Query: 411 MNG 413
MNG
Sbjct: 251 MNG 253
Score = 124 (48.7 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 35/150 (23%), Positives = 70/150 (46%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG + +TEA L F + + + +D +R S G ++ +A++A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALDTM 72
Query: 77 HNKKTLPGASSPLQVKYADGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 135
N + + G + D L + +FI L ++ + FS +G I +++
Sbjct: 73 -NFEVIKGRPVRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKVV 131
Query: 136 RGSQQTSKGCAFLKYETKEQALAALEAING 165
+ S+G F+ +ET+E A A++ +NG
Sbjct: 132 C-DENGSRGHGFVHFETQEAATRAIQTMNG 160
Score = 117 (46.2 bits), Expect = 4.3e-12, Sum P(2) = 4.3e-12
Identities = 25/65 (38%), Positives = 35/65 (53%)
Query: 349 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 408
G NL++ ++ D+ L F +G + SAKV + G SK FGFV + SP A A+
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAV 350
Query: 409 AMMNG 413
MNG
Sbjct: 351 TEMNG 355
Score = 91 (37.1 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 33/164 (20%), Positives = 72/164 (43%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
+F+ + + L F F + ++ D+ SRG FV +++ A +A+
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDEN--GSRGHGFVHFETQEAATRAIQTM 158
Query: 77 H-----NKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIK 130
+ ++K G + + A+ +E ++I ++ + + +FS +G
Sbjct: 159 NGMLLNDRKVFVGHFKSRKEREAEFGARAMEFTNVYIKNFGDDMDDNRLREIFSRFGKTL 218
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 174
++++ SKG F+ +E E+A A+ +NGK ++ G V
Sbjct: 219 SVKVMMDHTGRSKGFGFVNFEKHEEAQKAVADMNGK-EINGRMV 261
>UNIPROTKB|H3BPI5 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL359757 HGNC:HGNC:8556 ProteinModelPortal:H3BPI5 SMR:H3BPI5
Ensembl:ENST00000562709 Bgee:H3BPI5 Uniprot:H3BPI5
Length = 255
Score = 122 (48.0 bits), Expect = 3.6e-13, Sum P(2) = 3.6e-13
Identities = 27/63 (42%), Positives = 38/63 (60%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N++I + ++ D+ L + F FG LS KV D++ G SK FGFVS+E AQ A+
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDE 250
Query: 411 MNG 413
MNG
Sbjct: 251 MNG 253
Score = 116 (45.9 bits), Expect = 3.6e-13, Sum P(2) = 3.6e-13
Identities = 37/152 (24%), Positives = 71/152 (46%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG + +TEA L F + + I +D T S +V ++A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTM 72
Query: 77 HNKKTLPGASSPLQVKYA--DGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
N + G P+++ ++ D L + +F+ L K+++ + S +G I
Sbjct: 73 -NFDVIKG--KPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCN 129
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAING 165
++ + SKG F+ +ET E A A++ +NG
Sbjct: 130 VVC-DENGSKGYGFVHFETHEAAERAIKKMNG 160
>UNIPROTKB|E2R9I1 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
Length = 700
Score = 127 (49.8 bits), Expect = 3.8e-13, Sum P(2) = 3.8e-13
Identities = 38/156 (24%), Positives = 71/156 (45%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
+F+ + K + L F F + ++ D+ S+G FV +++ ADKA+
Sbjct: 141 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYAFVHFETQEAADKAIEKM 198
Query: 77 H-----NKKTLPGASSPLQVKYAD-GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
+ ++K G + + A+ G + ++I + V + + LFS +G
Sbjct: 199 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 258
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 166
++++R SKG F+ YE E A A+E +NGK
Sbjct: 259 SVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGK 294
Score = 125 (49.1 bits), Expect = 3.8e-13, Sum P(2) = 3.8e-13
Identities = 27/65 (41%), Positives = 37/65 (56%)
Query: 349 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 408
G NL+I ++ D++L F FG + SAKV ++ G SK FGFV + SP A A+
Sbjct: 333 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAV 390
Query: 409 AMMNG 413
MNG
Sbjct: 391 TEMNG 395
Score = 125 (49.1 bits), Expect = 0.00014, P = 0.00014
Identities = 28/63 (44%), Positives = 36/63 (57%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N++I + +E D+ L F FG+ LS KV D + G SK FGFVSYE A A+
Sbjct: 232 NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHEDANKAVEE 290
Query: 411 MNG 413
MNG
Sbjct: 291 MNG 293
Score = 48 (22.0 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 22/72 (30%), Positives = 30/72 (41%)
Query: 253 GIIPPVNQGNAMRGASPDLSSN-MGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGH 311
G +P Q A R A + + P YA V S +PA+ LQ P P + G
Sbjct: 553 GGVPTAVQTLAPRAAVAAAAPRAVAPYKYASS----VRSPHPAIQPLQAPQPAVH-VQGQ 607
Query: 312 RPLNNSPGSVSP 323
PL S + +P
Sbjct: 608 EPLTASMLAAAP 619
>ZFIN|ZDB-GENE-070912-150 [details] [associations]
symbol:si:ch211-168n8.1 "si:ch211-168n8.1"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-070912-150 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:CT027714 IPI:IPI00833044 Ensembl:ENSDART00000122509
Uniprot:E7F1Z5
Length = 187
Score = 178 (67.7 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 36/78 (46%), Positives = 51/78 (65%)
Query: 109 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 168
ML K +E +V LF YG I++ +LRG SKGCAF+K+ T +A +A+ ++G
Sbjct: 1 MLNKQQTEEDVYRLFEPYGVIEECTVLRGPDGNSKGCAFVKFSTHTEAQSAIGGLHGSQT 60
Query: 169 MEGSSVPLVVKWADTEKE 186
M G+S LVVK+ADT+KE
Sbjct: 61 MPGASSSLVVKFADTDKE 78
Score = 144 (55.7 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 32/107 (29%), Positives = 55/107 (51%)
Query: 24 KHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLP 83
K TE + +F+ + +++E +++ S+GC FV + EA A+ H +T+P
Sbjct: 4 KQQTEEDVYRLFEPYGVIEECTVLRGPDGN-SKGCAFVKFSTHTEAQSAIGGLHGSQTMP 62
Query: 84 GASSPLQVKYADGELERLEHKL--FIGMLPKNVSEAEVSALFSIYGT 128
GASS L VK+AD + ER ++ +G + V+ FS Y +
Sbjct: 63 GASSSLVVKFADTDKERTIRRMQQMVGQF--GIFNPSVALPFSTYSS 107
>ASPGD|ASPL0000010999 [details] [associations]
symbol:fabM species:162425 "Emericella nidulans"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BN001302 EMBL:AACD01000065
GO:GO:0051028 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
EMBL:U70731 RefSeq:XP_661604.1 ProteinModelPortal:Q5B630 SMR:Q5B630
STRING:Q5B630 PRIDE:Q5B630 EnsemblFungi:CADANIAT00004687
GeneID:2873424 KEGG:ani:AN4000.2 OMA:MIRITYS OrthoDB:EOG4QJVWJ
Uniprot:Q5B630
Length = 732
Score = 144 (55.7 bits), Expect = 5.1e-13, Sum P(2) = 5.1e-13
Identities = 38/150 (25%), Positives = 67/150 (44%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG++ +TEA L +F V + + +D TR S G +V ++A++
Sbjct: 44 LYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDEL 103
Query: 77 HNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 135
N + G + D L + + +FI L + + F+ +G I ++
Sbjct: 104 -NYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVA 162
Query: 136 RGSQQTSKGCAFLKYETKEQALAALEAING 165
+ SKG F+ YET E A A++ +NG
Sbjct: 163 QDEFGVSKGYGFVHYETAEAANNAIKHVNG 192
Score = 126 (49.4 bits), Expect = 0.00012, P = 0.00012
Identities = 28/63 (44%), Positives = 40/63 (63%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N+FI ++ ++ L + F AFG +LS KV D+ GVSK +GFV YE+ +A NAI
Sbjct: 131 NVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEF-GVSKGYGFVHYETAEAANNAIKH 189
Query: 411 MNG 413
+NG
Sbjct: 190 VNG 192
Score = 106 (42.4 bits), Expect = 5.1e-13, Sum P(2) = 5.1e-13
Identities = 24/62 (38%), Positives = 37/62 (59%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N++I +I E D+E F+ FG + SA + D + G S+ FGFV++ + SAQ A+
Sbjct: 224 NIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRD-SEGKSRGFGFVNFSTHESAQAAVEE 282
Query: 411 MN 412
MN
Sbjct: 283 MN 284
Score = 99 (39.9 bits), Expect = 1.4e-06, Sum P(3) = 1.4e-06
Identities = 39/158 (24%), Positives = 69/158 (43%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKA---V 73
+F+ + + L F F + + +D+ S+G FV + + A+ A V
Sbjct: 132 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFG-VSKGYGFVHYETAEAANNAIKHV 190
Query: 74 NAC--HNKKTLPG---ASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGT 128
N ++KK G + Q K+ E++ ++I + V + E LF +G
Sbjct: 191 NGMLLNDKKVFVGHHISKKDRQSKFE--EMKANFTNIYIKNIDPEVEDEEFRKLFEKFGE 248
Query: 129 IKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 166
I + R S+ S+G F+ + T E A AA+E +N K
Sbjct: 249 ITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDK 286
Score = 96 (38.9 bits), Expect = 5.6e-12, Sum P(2) = 5.6e-12
Identities = 48/189 (25%), Positives = 70/189 (37%)
Query: 142 SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKEXXXXXXXXXXXXXNN 201
SKG F+ + + ++A A+ +N + + G PL V A K+ NN
Sbjct: 416 SKGFGFVCFSSPDEASKAVTEMN-QRMVNGK--PLYVALAQ-RKDVRRSQLEASIQARNN 471
Query: 202 LPNADSQHPSLFGALPMG----YAPPYNGY--GYQASGSYGLMQYRLPPMQNQPG-FHGI 254
+ + + G M Y P G+ G Q G + + M +PG + G
Sbjct: 472 IRQQQAAAAAGMGQAYMAPAVFYGPGQQGFIPGAQRGGMFPPQPGMMMGMPGRPGQYPGP 531
Query: 255 IPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPL 314
P QG RG P+ + P +P G G P G+ YPM G G R
Sbjct: 532 FPG-QQGG--RGVGPN--QQIPPNFQGLPMGAMQGPGIPN--GMGYPM-VQGQFGGGRGR 583
Query: 315 NNSPGSVSP 323
PG P
Sbjct: 584 GQVPGMGGP 592
Score = 80 (33.2 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 33/156 (21%), Positives = 67/156 (42%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
+++ + + + + +F++F + + +D + SRG FV + + A AV
Sbjct: 225 IYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGK-SRGFGFVNFSTHESAQAAVEEM 283
Query: 77 HNK-----KTLPGASSP-------LQVKYADGELERLEH----KLFIGMLPKNVSEAEVS 120
++K K G + L+ +Y +E+ L++ L +V + ++
Sbjct: 284 NDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDVDDDKLR 343
Query: 121 ALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQA 156
LF YGTI +++R + A + ETKE A
Sbjct: 344 ELFGPYGTITSAKVMRDTAPVET--ATPESETKESA 377
Score = 66 (28.3 bits), Expect = 1.4e-11, Sum P(3) = 1.4e-11
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 385 KATGVSKCFGFVSYESPASAQNAIAMMN 412
K G SK FGFV + SP A A+ MN
Sbjct: 411 KPLGKSKGFGFVCFSSPDEASKAVTEMN 438
Score = 66 (28.3 bits), Expect = 1.4e-11, Sum P(3) = 1.4e-11
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 349 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKA 386
G NL++ ++ + D +L F +G + SAKV D A
Sbjct: 325 GVNLYVKNLTDDVDDDKLRELFGPYGTITSAKVMRDTA 362
>WB|WBGene00004723 [details] [associations]
symbol:sap-49 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0040022 "feminization of hermaphroditic germ-line"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0005681
GO:GO:0003723 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281 EMBL:Z46676
GO:GO:0040020 NextBio:883379 GO:GO:0040022 eggNOG:COG0724
GeneTree:ENSGT00690000101901 PIR:T19069 RefSeq:NP_001021932.1
ProteinModelPortal:Q09442 SMR:Q09442 IntAct:Q09442 STRING:Q09442
PaxDb:Q09442 EnsemblMetazoa:C08B11.5.1 EnsemblMetazoa:C08B11.5.2
GeneID:4363023 KEGG:cel:CELE_C08B11.5 UCSC:C08B11.5.1 CTD:4363023
WormBase:C08B11.5 InParanoid:Q09442 OMA:VSETLLW ArrayExpress:Q09442
Uniprot:Q09442
Length = 388
Score = 195 (73.7 bits), Expect = 7.2e-13, P = 7.2e-13
Identities = 86/312 (27%), Positives = 136/312 (43%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
++VG + + ++E+ L + + V VN+ KD+ T +G FV ++AD A+
Sbjct: 15 IYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKIL 74
Query: 77 HNKKTLPGASSPLQVKYADGELERLE--HKLFIGMLPKNVSEAEVSALFSIYGTIKDL-Q 133
+ K L G P++V A + ++ +F+G L V E + FS +G I + +
Sbjct: 75 NMIK-LYG--KPIKVNKASAHEKNMDVGANIFVGNLDPEVDEKLLYDTFSAFGVILQVPK 131
Query: 134 ILRGSQQ-TSKGCAFLKYETKEQALAALEAINGKHKMEGS-SVPLVVKWADTEKEXXXXX 191
I+R TSKG AF+ + + E + ALEA+NG+ + +V K D++ E
Sbjct: 132 IMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFK-RDSKGERHGTA 190
Query: 192 XXXXXXXXNNLPNADSQHPSLFGALPMGYAP--PYNGYGYQAS---GSYGLMQYRLPPMQ 246
N L D H +F +P+G P G A+ + G Y+ PP+
Sbjct: 191 AERMLAAQNPLFPKDRPH-QVFSDVPLGVPANTPLAMPGVHAAIAAHATGRPGYQPPPLM 249
Query: 247 N--QPGFHGIIPPVNQGN-AMRGASPDL--SSNMGPRNYAMPPSGFVGSGYPAVPGLQYP 301
Q G+ G PPV ++ P + + M PR P SG P PG
Sbjct: 250 GMAQSGYQGQYPPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRT-- 307
Query: 302 MPYPGGMLGHRP 313
P P GM G P
Sbjct: 308 -PGPPGMPGMPP 318
>UNIPROTKB|Q09442 [details] [associations]
symbol:sap-49 "Splicing factor 3B subunit 4" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011
GO:GO:0005681 GO:GO:0003723 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 EMBL:Z46676 GO:GO:0040020 NextBio:883379
GO:GO:0040022 eggNOG:COG0724 GeneTree:ENSGT00690000101901
PIR:T19069 RefSeq:NP_001021932.1 ProteinModelPortal:Q09442
SMR:Q09442 IntAct:Q09442 STRING:Q09442 PaxDb:Q09442
EnsemblMetazoa:C08B11.5.1 EnsemblMetazoa:C08B11.5.2 GeneID:4363023
KEGG:cel:CELE_C08B11.5 UCSC:C08B11.5.1 CTD:4363023
WormBase:C08B11.5 InParanoid:Q09442 OMA:VSETLLW ArrayExpress:Q09442
Uniprot:Q09442
Length = 388
Score = 195 (73.7 bits), Expect = 7.2e-13, P = 7.2e-13
Identities = 86/312 (27%), Positives = 136/312 (43%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
++VG + + ++E+ L + + V VN+ KD+ T +G FV ++AD A+
Sbjct: 15 IYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKIL 74
Query: 77 HNKKTLPGASSPLQVKYADGELERLE--HKLFIGMLPKNVSEAEVSALFSIYGTIKDL-Q 133
+ K L G P++V A + ++ +F+G L V E + FS +G I + +
Sbjct: 75 NMIK-LYG--KPIKVNKASAHEKNMDVGANIFVGNLDPEVDEKLLYDTFSAFGVILQVPK 131
Query: 134 ILRGSQQ-TSKGCAFLKYETKEQALAALEAINGKHKMEGS-SVPLVVKWADTEKEXXXXX 191
I+R TSKG AF+ + + E + ALEA+NG+ + +V K D++ E
Sbjct: 132 IMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFK-RDSKGERHGTA 190
Query: 192 XXXXXXXXNNLPNADSQHPSLFGALPMGYAP--PYNGYGYQAS---GSYGLMQYRLPPMQ 246
N L D H +F +P+G P G A+ + G Y+ PP+
Sbjct: 191 AERMLAAQNPLFPKDRPH-QVFSDVPLGVPANTPLAMPGVHAAIAAHATGRPGYQPPPLM 249
Query: 247 N--QPGFHGIIPPVNQGN-AMRGASPDL--SSNMGPRNYAMPPSGFVGSGYPAVPGLQYP 301
Q G+ G PPV ++ P + + M PR P SG P PG
Sbjct: 250 GMAQSGYQGQYPPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRT-- 307
Query: 302 MPYPGGMLGHRP 313
P P GM G P
Sbjct: 308 -PGPPGMPGMPP 318
>SGD|S000000967 [details] [associations]
symbol:PAB1 "Poly(A) binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0008143 "poly(A) RNA binding"
evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005840 "ribosome" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006446 "regulation of translational
initiation" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
SGD:S000000967 GO:GO:0005634 GO:GO:0000166 GO:GO:0006446
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005840 EMBL:BK006939
GO:GO:0051028 EMBL:U18922 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 GO:GO:0060211
GeneTree:ENSGT00640000091232 OrthoDB:EOG4QJVWJ EMBL:M12780
EMBL:M13371 EMBL:D00023 EMBL:AY692854 PIR:A25221 RefSeq:NP_011092.1
PDB:1IFW PDBsum:1IFW ProteinModelPortal:P04147 SMR:P04147
DIP:DIP-2275N IntAct:P04147 MINT:MINT-693056 STRING:P04147
PaxDb:P04147 PeptideAtlas:P04147 EnsemblFungi:YER165W GeneID:856912
KEGG:sce:YER165W OMA:ITEKNQQ EvolutionaryTrace:P04147
NextBio:983356 Genevestigator:P04147 GermOnline:YER165W
Uniprot:P04147
Length = 577
Score = 139 (54.0 bits), Expect = 7.6e-13, Sum P(2) = 7.6e-13
Identities = 48/202 (23%), Positives = 80/202 (39%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG + ++EA L +F V + + +D T+ S G +V + KA+
Sbjct: 40 LYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQL 99
Query: 77 HNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 135
N + G + D L + +FI L ++ + FS++G I +I
Sbjct: 100 -NYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIA 158
Query: 136 RGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV---P-LVVKWADTEKEXXXXX 191
SKG F+ +E + A A++A+NG + G + P L K D++ E
Sbjct: 159 TDENGKSKGFGFVHFEEEGAAKEAIDALNGM-LLNGQEIYVAPHLSRKERDSQLEETKAH 217
Query: 192 XXXXXXXXNNLPNADSQHPSLF 213
N D Q LF
Sbjct: 218 YTNLYVKNINSETTDEQFQELF 239
Score = 122 (48.0 bits), Expect = 0.00024, P = 0.00024
Identities = 63/274 (22%), Positives = 111/274 (40%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+V + T+ Q +F +F + ++ KD + +G FV ++A KAV A
Sbjct: 221 LYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKL-KGFGFVNYEKHEDAVKAVEAL 279
Query: 77 HN-----KKTLPGASSP-------LQVKYADGELERLEH----KLFIGMLPKNVSEAEVS 120
++ +K G + L+ +Y LE++ LF+ L +V + ++
Sbjct: 280 NDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLE 339
Query: 121 ALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180
F+ YGTI +++R SKG F+ + T E+A +AI K++ + PL V
Sbjct: 340 EEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEAT---KAITEKNQQIVAGKPLYVAI 396
Query: 181 ADTEKEXXXXXXXXXXXXXNNL--PNADSQHPSLFGALPMGYAPPYNGYGYQASGSY--- 235
A K+ N + A + + +P + PP YG
Sbjct: 397 AQ-RKDVRRSQLAQQIQARNQMRYQQATAAAAAAAAGMPGQFMPPMF-YGVMPPRGVPFN 454
Query: 236 GLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASP 269
G ++ PM P +G+ PP + + G P
Sbjct: 455 GPNPQQMNPMGGMPK-NGM-PPQFRNGPVYGVPP 486
Score = 115 (45.5 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N+FI ++ + ++ L + F FG +LS+K+ D+ G SK FGFV +E +A+ AI
Sbjct: 127 NIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDE-NGKSKGFGFVHFEEEGAAKEAIDA 185
Query: 411 MNG 413
+NG
Sbjct: 186 LNG 188
Score = 107 (42.7 bits), Expect = 7.6e-13, Sum P(2) = 7.6e-13
Identities = 24/64 (37%), Positives = 34/64 (53%)
Query: 349 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 408
G NLF+ ++ D++L F +G + SAKV + G SK FGFV + +P A AI
Sbjct: 321 GVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTE-NGKSKGFGFVCFSTPEEATKAI 379
Query: 409 AMMN 412
N
Sbjct: 380 TEKN 383
Score = 98 (39.6 bits), Expect = 6.5e-12, Sum P(2) = 6.5e-12
Identities = 23/62 (37%), Positives = 34/62 (54%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
NL++ +I E D++ F FG ++SA + D A G K FGFV+YE A A+
Sbjct: 220 NLYVKNINSETTDEQFQELFAKFGPIVSASLEKD-ADGKLKGFGFVNYEKHEDAVKAVEA 278
Query: 411 MN 412
+N
Sbjct: 279 LN 280
Score = 90 (36.7 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 20/68 (29%), Positives = 38/68 (55%)
Query: 98 LERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQA 156
+E L++G L +VSEA + +FS G++ +++ R + +TS G A++ + E
Sbjct: 33 VENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAG 92
Query: 157 LAALEAIN 164
A+E +N
Sbjct: 93 RKAIEQLN 100
>UNIPROTKB|Q6GR16 [details] [associations]
symbol:epabp-b "Embryonic polyadenylate-binding protein B"
species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043009
"chordate embryonic development" evidence=ISS] [GO:0043621 "protein
self-association" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0043621 GO:GO:0048255 GO:GO:0043009 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:BC071118
RefSeq:NP_001085351.1 UniGene:Xl.3974 ProteinModelPortal:Q6GR16
SMR:Q6GR16 PRIDE:Q6GR16 GeneID:443777 KEGG:xla:443777 CTD:443777
Xenbase:XB-GENE-6251876 GO:GO:0031370 Uniprot:Q6GR16
Length = 629
Score = 125 (49.1 bits), Expect = 7.8e-13, Sum P(2) = 7.8e-13
Identities = 36/152 (23%), Positives = 75/152 (49%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L++G + +TEA L F + + + +D TR S G ++ +A++A++
Sbjct: 13 LYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72
Query: 77 HNKKTLPGASSPLQVKYA--DGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
N + + G P+++ ++ D L + +FI L ++ + FS +G I +
Sbjct: 73 -NFEVIKGR--PIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCK 129
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAING 165
++ + S+G F+ +ET+E A A++ +NG
Sbjct: 130 VVC-DEYGSRGYGFVHFETQEAANRAIQTMNG 160
Score = 123 (48.4 bits), Expect = 7.8e-13, Sum P(2) = 7.8e-13
Identities = 26/63 (41%), Positives = 38/63 (60%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N++I + ++ D+ L F AFG LS KV +D + G S+ FGFV+Y + AQ A+
Sbjct: 192 NVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNS-GRSRGFGFVNYGNHEEAQKAVTE 250
Query: 411 MNG 413
MNG
Sbjct: 251 MNG 253
Score = 111 (44.1 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 24/65 (36%), Positives = 33/65 (50%)
Query: 349 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 408
G NL++ ++ D L F +G + S KV + G SK FGFV + SP A A+
Sbjct: 293 GVNLYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTEG--GHSKGFGFVCFSSPEEATKAV 350
Query: 409 AMMNG 413
MNG
Sbjct: 351 TEMNG 355
Score = 91 (37.1 bits), Expect = 5.6e-08, Sum P(2) = 5.6e-08
Identities = 31/164 (18%), Positives = 74/164 (45%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
+F+ + + L F F + ++ D+ SRG FV +++ A++A+
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEY--GSRGYGFVHFETQEAANRAIQTM 158
Query: 77 H-----NKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIK 130
+ ++K G + + + + +E ++I +++ + + +FS +G
Sbjct: 159 NGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTL 218
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 174
++++ + S+G F+ Y E+A A+ +NGK ++ G V
Sbjct: 219 SVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMNGK-EVNGRMV 261
>UNIPROTKB|H3BNY3 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL359757 TIGRFAMs:TIGR01628
HGNC:HGNC:8556 ProteinModelPortal:H3BNY3 SMR:H3BNY3
Ensembl:ENST00000569397 Bgee:H3BNY3 Uniprot:H3BNY3
Length = 347
Score = 122 (48.0 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 27/63 (42%), Positives = 38/63 (60%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N++I + ++ D+ L + F FG LS KV D++ G SK FGFVS+E AQ A+
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDE 250
Query: 411 MNG 413
MNG
Sbjct: 251 MNG 253
Score = 116 (45.9 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 37/152 (24%), Positives = 71/152 (46%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG + +TEA L F + + I +D T S +V ++A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTM 72
Query: 77 HNKKTLPGASSPLQVKYA--DGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
N + G P+++ ++ D L + +F+ L K+++ + S +G I
Sbjct: 73 -NFDVIKG--KPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCN 129
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAING 165
++ + SKG F+ +ET E A A++ +NG
Sbjct: 130 VVC-DENGSKGYGFVHFETHEAAERAIKKMNG 160
Score = 102 (41.0 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
Identities = 33/164 (20%), Positives = 72/164 (43%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
+FV + K + L F + N++ D+ S+G FV + + A++A+
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDEN--GSKGYGFVHFETHEAAERAIKKM 158
Query: 77 HN-----KKTLPGASSPLQVKYAD-GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
+ +K G + + A+ G + ++I +++ + + LF +G
Sbjct: 159 NGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPAL 218
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 174
++++ SKG F+ +E E A A++ +NGK ++ G +
Sbjct: 219 SVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGK-ELNGKQI 261
Score = 99 (39.9 bits), Expect = 4.0e-10, Sum P(2) = 4.0e-10
Identities = 22/54 (40%), Positives = 31/54 (57%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASA 404
NL++ ++ D+ L AF FG + SAKV ++ G SK FGFV + SP A
Sbjct: 295 NLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEA 346
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 173 (66.0 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 43/156 (27%), Positives = 85/156 (54%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L V +P++MT+ +L ++F ++ +++DK T S G FV ++A+KA+
Sbjct: 38 KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 97
Query: 74 NACHNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + + + ++V YA + + L++ LPK +++ E+ LFS YG I
Sbjct: 98 NTLNGLRL---QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 154
Query: 133 QILRGSQQT--SKGCAFLKYETKEQALAALEAINGK 166
+IL Q T S+G F++++ + +A A++ +NG+
Sbjct: 155 RILV-DQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 128 (50.1 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 21/64 (32%), Positives = 41/64 (64%)
Query: 350 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 409
ANL++ +P+ +EL F +GR++++++ VD+ TG+S+ GF+ ++ A+ AI
Sbjct: 125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184
Query: 410 MMNG 413
+NG
Sbjct: 185 GLNG 188
Score = 124 (48.7 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
NL + ++PQ +EL + F + G + S K+ DK TG S +GFV+Y P A+ AI
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 411 MNG 413
+NG
Sbjct: 100 LNG 102
Score = 88 (36.0 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 25/94 (26%), Positives = 44/94 (46%)
Query: 74 NACHNKKTLPG-ASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N + T+ SSP+ G E + L + LP+N+++ E+ +LF G I+
Sbjct: 13 NTANGPTTINNNCSSPVD----SGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESC 68
Query: 133 QILRGS-QQTSKGCAFLKYETKEQALAALEAING 165
+++R S G F+ Y + A A+ +NG
Sbjct: 69 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNG 102
>UNIPROTKB|K7ES14 [details] [associations]
symbol:CELF5 "CUGBP Elav-like family member 5" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 EMBL:AC005331 EMBL:AC006505 EMBL:AC010649
EMBL:AC123911 HGNC:HGNC:14058 Ensembl:ENST00000588350
Uniprot:K7ES14
Length = 295
Score = 187 (70.9 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 70/210 (33%), Positives = 93/210 (44%)
Query: 109 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 168
ML K SE +V LF +G I + +LRG +SKGCAF+K+ + +A AA+ A++G
Sbjct: 1 MLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQT 60
Query: 169 MEGSSVPLVVKWADTEKEXXXXXXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYG 228
M G+S LVVK+ADT+KE L PSL LP PY+ Y
Sbjct: 61 MPGASSSLVVKFADTDKERTLRRMQQMVGQLGILT------PSL--TLPFS---PYSAYA 109
Query: 229 YQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFV 288
QA LMQ + + + + P V +S N P P SG
Sbjct: 110 -QA-----LMQQQTTVLSTSGSY--LSPGVAFSPCHIQQIGAVSLNGLPATPIAPASGLH 161
Query: 289 GS---GYPAVPGLQYPM--------PYPGG 307
G AVPGL P+ P+PGG
Sbjct: 162 SPPLLGTTAVPGLVAPITNGFAGVVPFPGG 191
Score = 158 (60.7 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 40/120 (33%), Positives = 63/120 (52%)
Query: 24 KHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLP 83
K +E +L +F+ F ++DE +++ +S+GC FV S EA A++A H +T+P
Sbjct: 4 KQQSEEDVLRLFQPFGVIDECTVLRGPDG-SSKGCAFVKFSSHTEAQAAIHALHGSQTMP 62
Query: 84 GASSPLQVKYADGELERLEHKL--FIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQT 141
GASS L VK+AD + ER ++ +G L + ++ FS Y Q L Q T
Sbjct: 63 GASSSLVVKFADTDKERTLRRMQQMVGQL--GILTPSLTLPFSPYSAYA--QALMQQQTT 118
Score = 42 (19.8 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 18/70 (25%), Positives = 26/70 (37%)
Query: 243 PPMQNQPGFHGIIPPVNQGNA----MRGASPDLSSNM--GPRNYAMPPSGFVGSGYPAVP 296
PP+ G++ P+ G A G P L + G Y + +PA
Sbjct: 163 PPLLGTTAVPGLVAPITNGFAGVVPFPGGHPALETVYANGLVPYPAQSPTVAETLHPAFS 222
Query: 297 GLQ-YPMPYP 305
G+Q Y YP
Sbjct: 223 GVQQYTAMYP 232
>UNIPROTKB|E1BNB4 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
Length = 618
Score = 126 (49.4 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 37/152 (24%), Positives = 73/152 (48%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG + +TEA L F + + + +D TR S G ++ +A++A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 77 HNKKTLPGASSPLQVKYA--DGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
N + + G P+++ ++ D L + +FI L ++ + FS +G I +
Sbjct: 73 -NFEVIKG--QPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCK 129
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAING 165
++ + S+G F+ +ET E A A+ +NG
Sbjct: 130 VVC-DEHGSRGFGFVHFETHEAAQNAISTMNG 160
Score = 120 (47.3 bits), Expect = 0.00043, P = 0.00043
Identities = 27/63 (42%), Positives = 40/63 (63%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N+FI ++ ++ L + F FG +LS KV D+ G S+ FGFV +E+ +AQNAI+
Sbjct: 100 NIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEH-G-SRGFGFVHFETHEAAQNAIST 157
Query: 411 MNG 413
MNG
Sbjct: 158 MNG 160
Score = 118 (46.6 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 25/65 (38%), Positives = 36/65 (55%)
Query: 349 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 408
G NL++ ++ D++L F +G + SAKV + G SK FGFV + SP A A+
Sbjct: 293 GVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAV 350
Query: 409 AMMNG 413
MNG
Sbjct: 351 TEMNG 355
Score = 116 (45.9 bits), Expect = 3.1e-12, Sum P(2) = 3.1e-12
Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N+++ ++ + +Q L + F FG++LS KV D + G S+ FGFV++E AQ A+
Sbjct: 192 NIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDS-GHSRGFGFVNFEKHEEAQKAVVN 250
Query: 411 MNG 413
MNG
Sbjct: 251 MNG 253
Score = 100 (40.3 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 32/156 (20%), Positives = 69/156 (44%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
+F+ + + L F F + ++ D+ SRG FV + + A A++
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDE--HGSRGFGFVHFETHEAAQNAISTM 158
Query: 77 H-----NKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIK 130
+ ++K G + + + +E +++ L +V E + LFS +G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKML 218
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 166
++++R S+G F+ +E E+A A+ +NG+
Sbjct: 219 SVKVMRDDSGHSRGFGFVNFEKHEEAQKAVVNMNGR 254
Score = 37 (18.1 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 154 EQALAALEAINGKHKMEG 171
E+ALA L+A M+G
Sbjct: 597 EEALAVLQAHQATEHMQG 614
>UNIPROTKB|Q98SP8 [details] [associations]
symbol:epabp-a "Embryonic polyadenylate-binding protein A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043009 "chordate
embryonic development" evidence=IEP] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0043009 GO:GO:0060212 GO:GO:0008143
HOVERGEN:HBG002295 EMBL:AF338225 EMBL:BC080020
RefSeq:NP_001082094.1 UniGene:Xl.777 ProteinModelPortal:Q98SP8
SMR:Q98SP8 PRIDE:Q98SP8 GeneID:398221 KEGG:xla:398221 CTD:398221
Xenbase:XB-GENE-5742498 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 Uniprot:Q98SP8
Length = 629
Score = 123 (48.4 bits), Expect = 2.1e-12, Sum P(2) = 2.1e-12
Identities = 26/63 (41%), Positives = 39/63 (61%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N++I + ++ D+ L F AFG LS KV +D + G S+ FGFV+Y + AQ A++
Sbjct: 192 NVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDS-GRSRGFGFVNYGNHEEAQKAVSE 250
Query: 411 MNG 413
MNG
Sbjct: 251 MNG 253
Score = 121 (47.7 bits), Expect = 2.1e-12, Sum P(2) = 2.1e-12
Identities = 35/152 (23%), Positives = 74/152 (48%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L++G + +TEA L F + + + +D TR S ++ +A++A++
Sbjct: 13 LYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDTM 72
Query: 77 HNKKTLPGASSPLQVKYA--DGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
N + + G P+++ ++ D L + +FI L +++ + FS +G I +
Sbjct: 73 -NFEVIKGR--PIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCK 129
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAING 165
++ + S+G F+ +ET E A A++ +NG
Sbjct: 130 VVC-DEHGSRGYGFVHFETHEAANRAIQTMNG 160
Score = 113 (44.8 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 25/65 (38%), Positives = 34/65 (52%)
Query: 349 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 408
G NL++ ++ D L F +G + SAKV + G SK FGFV + SP A A+
Sbjct: 293 GVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAV 350
Query: 409 AMMNG 413
MNG
Sbjct: 351 TEMNG 355
Score = 93 (37.8 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 29/156 (18%), Positives = 69/156 (44%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
+F+ + + + L F F + ++ D+ SRG FV + + A++A+
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDE--HGSRGYGFVHFETHEAANRAIQTM 158
Query: 77 H-----NKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIK 130
+ ++K G + + + + +E ++I +++ + + +FS +G
Sbjct: 159 NGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTL 218
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 166
++++ S+G F+ Y E+A A+ +NGK
Sbjct: 219 SVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNGK 254
Score = 39 (18.8 bits), Expect = 0.00092, Sum P(2) = 0.00092
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 154 EQALAALEAINGKHKMEGSSVPLVV 178
E+A+A L+A K + S+ P ++
Sbjct: 605 EEAVAVLQAHQAKENAQKSAQPSLI 629
>UNIPROTKB|H9L019 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:AADN02044320 RefSeq:XP_423721.2 UniGene:Gga.51399
ProteinModelPortal:H9L019 Ensembl:ENSGALT00000021786 GeneID:426042
KEGG:gga:426042 Uniprot:H9L019
Length = 418
Score = 191 (72.3 bits), Expect = 2.6e-12, P = 2.6e-12
Identities = 90/309 (29%), Positives = 134/309 (43%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
++VG + + ++E L +F + V ++ KD+ T +G FV S ++AD A+
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 77 HNKKTLPGASSPLQVKYADGELERLE--HKLFIGMLPKNVSEAEVSALFSIYGTIKDL-Q 133
+ K L G P++V A + L+ +FIG L + E + FS +G I +
Sbjct: 75 NMIK-LYG--KPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 134 ILRGSQQ-TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA---DTEKEXXX 189
I+R SKG AF+ + + + + AA+EA+NG++ P+ V +A D++ E
Sbjct: 132 IMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNR---PITVSYAFKKDSKGERHG 188
Query: 190 XXXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQP 249
N L AD H LF P PP + G+ LPP P
Sbjct: 189 SAAERLLAAQNPLSQADRPH-QLFADAP---PPPSVPTPVVTALGPGVTPPGLPP----P 240
Query: 250 GFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPP-SGFVGSGYPAVP-GLQYPMPY--- 304
G PPV AM P + M P MPP +G G A P G P P+
Sbjct: 241 G--SFPPPVPPPGAM---PPGMPPAMPPP--PMPPGAGAPGPPTGAAPTGGHPPHPHAFP 293
Query: 305 PGGMLGHRP 313
PGGM H P
Sbjct: 294 PGGM--HHP 300
>UNIPROTKB|F1SDR6 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
Length = 608
Score = 123 (48.4 bits), Expect = 3.1e-12, Sum P(2) = 3.1e-12
Identities = 37/152 (24%), Positives = 72/152 (47%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG + +TEA L F + + + +D TR S G ++ +A++A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 77 HNKKTLPGASSPLQVKYA--DGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
N + + G P+++ ++ D L + +FI L ++ + FS +G I +
Sbjct: 73 -NFEVIKG--QPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDNKALYDTFSTFGNILSCK 129
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAING 165
++ S+G F+ +ET E A A+ +NG
Sbjct: 130 VVC-DDHGSRGFGFVHFETHEAAQNAIRTMNG 160
Score = 119 (46.9 bits), Expect = 3.1e-12, Sum P(2) = 3.1e-12
Identities = 25/65 (38%), Positives = 36/65 (55%)
Query: 349 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 408
G NL++ ++ D++L F +G + SAKV + G SK FGFV + SP A A+
Sbjct: 293 GVNLYVKNLDDSIDDEKLRKEFAPYGMITSAKVMTEG--GHSKGFGFVCFSSPEEATKAV 350
Query: 409 AMMNG 413
MNG
Sbjct: 351 TEMNG 355
Score = 109 (43.4 bits), Expect = 3.4e-11, Sum P(2) = 3.4e-11
Identities = 23/63 (36%), Positives = 39/63 (61%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N+++ ++ + ++ L + F FG++LS KV D + G S+ FGFV++E AQ A+
Sbjct: 192 NIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDDS-GHSRGFGFVNFEKHEDAQKAVTD 250
Query: 411 MNG 413
MNG
Sbjct: 251 MNG 253
Score = 103 (41.3 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
Identities = 36/156 (23%), Positives = 67/156 (42%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
+F+ + + L F F + ++ D SRG FV + + A A+
Sbjct: 101 VFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDD--HGSRGFGFVHFETHEAAQNAIRTM 158
Query: 77 H-----NKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIK 130
+ ++K G + + A+ LE +++ L +V E + LFS +G I
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLHVDVDERCLQDLFSQFGKIL 218
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 166
++++R S+G F+ +E E A A+ +NGK
Sbjct: 219 SVKVMRDDSGHSRGFGFVNFEKHEDAQKAVTDMNGK 254
>ZFIN|ZDB-GENE-070620-21 [details] [associations]
symbol:zgc:165603 "zgc:165603" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-070620-21 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:CABZ01080723 EMBL:CABZ01080724 EMBL:CABZ01080725
EMBL:CABZ01080726 EMBL:CABZ01080727 EMBL:BC142894 IPI:IPI00851471
RefSeq:NP_001092221.1 UniGene:Dr.154402 SMR:A5PLG5
Ensembl:ENSDART00000105482 GeneID:571425 KEGG:dre:571425
eggNOG:KOG0146 HOGENOM:HOG000286011 HOVERGEN:HBG090495 OMA:DGHESSP
NextBio:20890554 Uniprot:A5PLG5
Length = 155
Score = 170 (64.9 bits), Expect = 3.3e-12, P = 3.3e-12
Identities = 29/70 (41%), Positives = 48/70 (68%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
+KLF+GQ+P+++ E L +F++F + E+ ++KD+ T +GC F+ +R+ A KA N
Sbjct: 82 IKLFIGQIPRNLEEKDLKPLFEQFGKIHELTVLKDRYTGMHKGCAFLTYCARESAIKAQN 141
Query: 75 ACHNKKTLPG 84
A H +KTLPG
Sbjct: 142 ALHEQKTLPG 151
Score = 133 (51.9 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 31/94 (32%), Positives = 52/94 (55%)
Query: 80 KTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS 138
K + G S P+ + G ++ + KLFIG +P+N+ E ++ LF +G I +L +L+
Sbjct: 59 KPMNG-SEPISIHPDSGTMKDQDAIKLFIGQIPRNLEEKDLKPLFEQFGKIHELTVLKDR 117
Query: 139 QQ-TSKGCAFLKYETKEQALAALEAINGKHKMEG 171
KGCAFL Y +E A+ A A++ + + G
Sbjct: 118 YTGMHKGCAFLTYCARESAIKAQNALHEQKTLPG 151
>UNIPROTKB|E2RND1 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
Length = 644
Score = 124 (48.7 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
Identities = 37/152 (24%), Positives = 72/152 (47%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG + +TEA L F + + + +D TR S G ++ +A++A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 77 HNKKTLPGASSPLQVKYA--DGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
N + + G P+++ ++ D L + +FI L ++ + FS +G I +
Sbjct: 73 -NFEVIKG--QPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCK 129
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAING 165
++ S+G F+ +ET E A A+ +NG
Sbjct: 130 VVC-DDHGSRGFGFVHFETHEAAQQAITTMNG 160
Score = 118 (46.6 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
Identities = 25/65 (38%), Positives = 36/65 (55%)
Query: 349 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 408
G NL++ ++ D++L F +G + SAKV + G SK FGFV + SP A A+
Sbjct: 293 GVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAV 350
Query: 409 AMMNG 413
MNG
Sbjct: 351 TEMNG 355
Score = 109 (43.4 bits), Expect = 3.0e-11, Sum P(2) = 3.0e-11
Identities = 23/63 (36%), Positives = 39/63 (61%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N+++ ++ + +Q L + F FG++LS KV D + G S+ FGFV+++ AQ A+
Sbjct: 192 NIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDDS-GHSRGFGFVNFQKHEEAQKAVMD 250
Query: 411 MNG 413
MNG
Sbjct: 251 MNG 253
Score = 96 (38.9 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 32/156 (20%), Positives = 68/156 (43%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
+F+ + + L F F + ++ D SRG FV + + A +A+
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDD--HGSRGFGFVHFETHEAAQQAITTM 158
Query: 77 H-----NKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIK 130
+ ++K G + + + +E +++ L +V E + LFS +G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQGLQDLFSRFGKML 218
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 166
++++R S+G F+ ++ E+A A+ +NGK
Sbjct: 219 SVKVMRDDSGHSRGFGFVNFQKHEEAQKAVMDMNGK 254
>UNIPROTKB|Q96B58 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein, isoform CRA_d" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CH471053
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
HSSP:P11940 EMBL:AC016700 UniGene:Hs.413123 HGNC:HGNC:11802
ChiTaRS:TIA1 EMBL:BC015944 IPI:IPI00743479 SMR:Q96B58 STRING:Q96B58
Ensembl:ENST00000416149 UCSC:uc002sgm.3 Uniprot:Q96B58
Length = 214
Score = 118 (46.6 bits), Expect = 5.1e-12, Sum P(2) = 5.1e-12
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
++F+ + E +++ AF FGR+ A+V D ATG SK +GFVS+ + A+NAI
Sbjct: 107 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 166
Query: 411 MNG 413
M G
Sbjct: 167 MGG 169
Score = 105 (42.0 bits), Expect = 5.1e-12, Sum P(2) = 5.1e-12
Identities = 27/85 (31%), Positives = 46/85 (54%)
Query: 99 ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALA 158
+ + L++G L ++V+EA + LFS G K+ +++ + C F+++ A A
Sbjct: 3 DEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFHEHRHAAA 61
Query: 159 ALEAINGKHKMEGSSVPLVVKWADT 183
AL A+NG+ K+ G V V WA T
Sbjct: 62 ALAAMNGR-KIMGKEVK--VNWATT 83
>UNIPROTKB|E1C131 [details] [associations]
symbol:E1C131 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 EMBL:AADN02067637 EMBL:AADN02067638
EMBL:AADN02067639 EMBL:AADN02067640 EMBL:AADN02067641
EMBL:AADN02067642 EMBL:AADN02067643 EMBL:AADN02067644
EMBL:AADN02067645 EMBL:AADN02067646 EMBL:AADN02067647
EMBL:AADN02067648 EMBL:AADN02067649 EMBL:AADN02067650
EMBL:AADN02067651 EMBL:AADN02067652 EMBL:AADN02067653
EMBL:AADN02067654 EMBL:AADN02067655 EMBL:AADN02067656
EMBL:AADN02067657 EMBL:AADN02067658 EMBL:AADN02067659
IPI:IPI00822398 ProteinModelPortal:E1C131
Ensembl:ENSGALT00000029259 OMA:YCHRESA Uniprot:E1C131
Length = 123
Score = 168 (64.2 bits), Expect = 5.5e-12, P = 5.5e-12
Identities = 30/72 (41%), Positives = 48/72 (66%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
+KLF+GQ+P+++ E L +F+EF + E+ ++KD+ T +GC F+ R+ A KA +
Sbjct: 52 IKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQS 111
Query: 75 ACHNKKTLPGAS 86
A H +KTLPG S
Sbjct: 112 ALHEQKTLPGVS 123
Score = 128 (50.1 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 28/71 (39%), Positives = 42/71 (59%)
Query: 104 KLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEA 162
KLFIG +P+N+ E ++ LF +G I +L +L+ KGCAFL Y +E AL A A
Sbjct: 53 KLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSA 112
Query: 163 INGKHKMEGSS 173
++ + + G S
Sbjct: 113 LHEQKTLPGVS 123
>FB|FBgn0264270 [details] [associations]
symbol:Sxl "Sex lethal" species:7227 "Drosophila
melanogaster" [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=NAS;TAS] [GO:0019099 "female germ-line sex
determination" evidence=TAS] [GO:0007549 "dosage compensation"
evidence=NAS;TAS] [GO:0019101 "female somatic sex determination"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008187 "poly-pyrimidine tract binding" evidence=IDA]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=TAS] [GO:0007541 "sex determination, primary response to
X:A ratio" evidence=NAS;TAS] [GO:0048477 "oogenesis" evidence=TAS]
[GO:0030237 "female sex determination" evidence=NAS] [GO:0007131
"reciprocal meiotic recombination" evidence=TAS] [GO:0018993
"somatic sex determination" evidence=NAS;TAS] [GO:0003729 "mRNA
binding" evidence=ISS;TAS] [GO:0007530 "sex determination"
evidence=NAS;TAS] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0007281 "germ cell development" evidence=TAS] [GO:0007548 "sex
differentiation" evidence=NAS;TAS] [GO:0017148 "negative regulation
of translation" evidence=IMP;IDA;NAS;TAS] [GO:0048027 "mRNA 5'-UTR
binding" evidence=IDA;TAS] [GO:0000900 "translation repressor
activity, nucleic acid binding" evidence=TAS] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=TAS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0007224 "smoothened signaling pathway"
evidence=IDA] [GO:0008083 "growth factor activity" evidence=IDA]
[GO:0007446 "imaginal disc growth" evidence=IMP] [GO:0009994
"oocyte differentiation" evidence=IDA] [GO:0043234 "protein
complex" evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006546
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0043234 GO:GO:0008266
GO:GO:0006355 GO:GO:0000166 EMBL:AE014298 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0048027 GO:GO:0003730 GO:GO:0007281
GO:GO:0008083 GO:GO:0007548 GO:GO:0007224 GO:GO:0007131
GO:GO:0009994 GO:GO:0000900 GO:GO:0048025 GO:GO:0019099
GO:GO:0000380 GO:GO:0007541 GO:GO:0007446 GO:GO:0007549
GO:GO:0019101 GeneTree:ENSGT00560000077064 EMBL:M23635 EMBL:M23636
EMBL:M59447 EMBL:M59448 EMBL:BT003583 EMBL:BT099922 EMBL:BT100240
EMBL:BT120392 EMBL:S88324 EMBL:D84425 PIR:A31639 PIR:A39725
RefSeq:NP_001027062.1 RefSeq:NP_001027063.1 RefSeq:NP_001027064.1
RefSeq:NP_001027065.1 RefSeq:NP_001027066.1 RefSeq:NP_001162686.1
RefSeq:NP_001162687.1 RefSeq:NP_001162688.1 RefSeq:NP_001162689.1
RefSeq:NP_001162690.1 RefSeq:NP_001162691.1 RefSeq:NP_001245559.1
RefSeq:NP_524791.3 RefSeq:NP_727160.2 RefSeq:NP_727161.2
RefSeq:NP_727162.2 RefSeq:NP_727163.2 RefSeq:NP_727164.2
RefSeq:NP_727165.2 RefSeq:NP_727166.2 RefSeq:NP_727167.2
RefSeq:NP_727168.1 UniGene:Dm.4502 PDB:1B7F PDB:1SXL PDB:2SXL
PDB:3SXL PDBsum:1B7F PDBsum:1SXL PDBsum:2SXL PDBsum:3SXL
ProteinModelPortal:P19339 SMR:P19339 IntAct:P19339 MINT:MINT-276991
STRING:P19339 PaxDb:P19339 PRIDE:P19339 EnsemblMetazoa:FBtr0331255
EnsemblMetazoa:FBtr0331262 EnsemblMetazoa:FBtr0331268
GeneID:3772180 KEGG:dme:Dmel_CG18350 CTD:3772180
FlyBase:FBgn0003659 eggNOG:NOG249299 InParanoid:P19339 OMA:HRDGAME
OrthoDB:EOG4F4QSS EvolutionaryTrace:P19339 NextBio:852740
Bgee:P19339 GermOnline:CG18350 TIGRFAMs:TIGR01659 Uniprot:P19339
Length = 354
Score = 186 (70.5 bits), Expect = 5.8e-12, P = 5.8e-12
Identities = 56/202 (27%), Positives = 96/202 (47%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L V +P+ MT+ +L A+F+ ++ I++D T S G FV S ++ +A+
Sbjct: 127 LIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVL 186
Query: 77 HNKKTLPGASSPLQVKYADGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL 135
N T+ + L+V YA E ++ L++ LP+ +++ ++ +F YG+I IL
Sbjct: 187 -NGITV--RNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNIL 243
Query: 136 RGSQQ-TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE-KEXXXXXXX 193
R +G AF++Y +E+A A+ A+N EG S PL V+ A+ K
Sbjct: 244 RDKLTGRPRGVAFVRYNKREEAQEAISALNNVIP-EGGSQPLSVRLAEEHGKAKAAHFMS 302
Query: 194 XXXXXXNNLPNADSQHPSLFGA 215
N+P Q P+ A
Sbjct: 303 QMGVVPANVPPPPPQPPAHMAA 324
Score = 117 (46.2 bits), Expect = 0.00039, P = 0.00039
Identities = 47/177 (26%), Positives = 74/177 (41%)
Query: 252 HGIIPPV---NQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPG-- 306
+G PP N+ + RG S G YA P S +P+ + +PG
Sbjct: 13 NGGYPPYGYNNKSSGGRGFGMSHSLPSGMSRYAFSPQDTEFS-FPSSSSRRGYNDFPGCG 71
Query: 307 GMLGHR-PLNNSPGS----VSPAVANS--NPXXXXXXXXXXXXQIEGPPGA---NLFIYH 356
G G+ NN G + P +N+ N + P A NL + +
Sbjct: 72 GSGGNGGSANNLGGGNMCHLPPMASNNSLNNLCGLSLGSGGSDDLMNDPRASNTNLIVNY 131
Query: 357 IPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 413
+PQ+ D+EL F+A G + + ++ D TG S + FV + S +Q AI ++NG
Sbjct: 132 LPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNG 188
>ZFIN|ZDB-GENE-020419-22 [details] [associations]
symbol:sf3b4 "splicing factor 3b, subunit 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-020419-22 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295 EMBL:AY099515
IPI:IPI00495328 UniGene:Dr.1505 ProteinModelPortal:Q8JGT1
SMR:Q8JGT1 STRING:Q8JGT1 InParanoid:Q8JGT1 ArrayExpress:Q8JGT1
Uniprot:Q8JGT1
Length = 400
Score = 186 (70.5 bits), Expect = 8.5e-12, P = 8.5e-12
Identities = 84/316 (26%), Positives = 131/316 (41%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
++VG + + ++E L +F + V ++ KD+ T +G FV S ++AD A+
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 77 HNKKTLPGASSPLQVKYADGELERLE--HKLFIGMLPKNVSEAEVSALFSIYGTIKDL-Q 133
+ K L G P++V A + L+ +FIG L + E + FS +G I +
Sbjct: 75 NMIK-LYG--KPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPK 131
Query: 134 ILRGSQQ-TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA---DTEKEXXX 189
I+R SKG AF+ + + + + AA+EA+NG++ P+ V +A D++ E
Sbjct: 132 IMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNR---PITVSYAFKKDSKGERHG 188
Query: 190 XXXXXXXXXXNNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQP 249
N L AD H LF P PP + + +PP P
Sbjct: 189 SAAERLLAAQNPLSQADRPH-QLFADAP---PPPSMPTPVMTALGAAMPIPGMPP----P 240
Query: 250 GFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGML 309
G +PP G G P + P A G G+P P +P GM
Sbjct: 241 GAFPPVPP--PGTMPPGMPPGMPMPPAPGTPAPQGGGGPPPGHPPFPPAGM---HPPGM- 294
Query: 310 GHRPL--NNSPGSVSP 323
H P+ PG V P
Sbjct: 295 PHMPMPPTGPPGMVPP 310
>UNIPROTKB|Q9H361 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
Length = 631
Score = 122 (48.0 bits), Expect = 9.0e-12, Sum P(2) = 9.0e-12
Identities = 27/63 (42%), Positives = 38/63 (60%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N++I + ++ D+ L + F FG LS KV D++ G SK FGFVS+E AQ A+
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDE 250
Query: 411 MNG 413
MNG
Sbjct: 251 MNG 253
Score = 120 (47.3 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 26/63 (41%), Positives = 36/63 (57%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
NL++ ++ D+ L AF FG + SAKV ++ G SK FGFV + SP A A+
Sbjct: 295 NLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTE 352
Query: 411 MNG 413
MNG
Sbjct: 353 MNG 355
Score = 116 (45.9 bits), Expect = 9.0e-12, Sum P(2) = 9.0e-12
Identities = 37/152 (24%), Positives = 71/152 (46%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG + +TEA L F + + I +D T S +V ++A+ A++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTM 72
Query: 77 HNKKTLPGASSPLQVKYA--DGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
N + G P+++ ++ D L + +F+ L K+++ + S +G I
Sbjct: 73 -NFDVIKG--KPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCN 129
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAING 165
++ + SKG F+ +ET E A A++ +NG
Sbjct: 130 VVC-DENGSKGYGFVHFETHEAAERAIKKMNG 160
Score = 102 (41.0 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 33/164 (20%), Positives = 72/164 (43%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
+FV + K + L F + N++ D+ S+G FV + + A++A+
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDEN--GSKGYGFVHFETHEAAERAIKKM 158
Query: 77 HN-----KKTLPGASSPLQVKYAD-GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
+ +K G + + A+ G + ++I +++ + + LF +G
Sbjct: 159 NGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPAL 218
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 174
++++ SKG F+ +E E A A++ +NGK ++ G +
Sbjct: 219 SVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGK-ELNGKQI 261
>UNIPROTKB|E9PKU1 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006376 "mRNA
splice site selection" evidence=IEA] [GO:0007286 "spermatid
development" evidence=IEA] [GO:0031369 "translation initiation
factor binding" evidence=IEA] [GO:0040018 "positive regulation of
multicellular organism growth" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0007286 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0040018
GO:GO:0003676 EMBL:AC090559 HGNC:HGNC:2549 ChiTaRS:CELF1
GO:GO:0006376 IPI:IPI00982591 ProteinModelPortal:E9PKU1 SMR:E9PKU1
Ensembl:ENST00000528434 ArrayExpress:E9PKU1 Bgee:E9PKU1
Uniprot:E9PKU1
Length = 114
Score = 165 (63.1 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 31/72 (43%), Positives = 49/72 (68%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRA--SRGCCFVICPSRQEADKA 72
+K+FVGQVP+ +E L +F+++ V E+N+++D++ S+GCCFV +R+ A +A
Sbjct: 43 IKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 102
Query: 73 VNACHNKKTLPG 84
NA HN K LPG
Sbjct: 103 QNALHNMKVLPG 114
Score = 128 (50.1 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 33/94 (35%), Positives = 52/94 (55%)
Query: 86 SSPLQVKYADGELERLEH------KLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQ 139
SSP+ K +G L+ + K+F+G +P+ SE ++ LF YG + ++ +LR
Sbjct: 21 SSPVSKKM-NGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRS 79
Query: 140 QT---SKGCAFLKYETKEQALAALEAINGKHKME 170
Q SKGC F+ + T++ AALEA N H M+
Sbjct: 80 QNPPQSKGCCFVTFYTRK---AALEAQNALHNMK 110
>UNIPROTKB|E9PQK4 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006376 "mRNA
splice site selection" evidence=IEA] [GO:0007286 "spermatid
development" evidence=IEA] [GO:0031369 "translation initiation
factor binding" evidence=IEA] [GO:0040018 "positive regulation of
multicellular organism growth" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0007286 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0040018
GO:GO:0003676 EMBL:AC090559 HGNC:HGNC:2549 ChiTaRS:CELF1
GO:GO:0006376 IPI:IPI00982054 ProteinModelPortal:E9PQK4 SMR:E9PQK4
Ensembl:ENST00000525841 ArrayExpress:E9PQK4 Bgee:E9PQK4
Uniprot:E9PQK4
Length = 87
Score = 165 (63.1 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 31/72 (43%), Positives = 49/72 (68%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRA--SRGCCFVICPSRQEADKA 72
+K+FVGQVP+ +E L +F+++ V E+N+++D++ S+GCCFV +R+ A +A
Sbjct: 16 IKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 75
Query: 73 VNACHNKKTLPG 84
NA HN K LPG
Sbjct: 76 QNALHNMKVLPG 87
Score = 127 (49.8 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 27/70 (38%), Positives = 42/70 (60%)
Query: 104 KLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQT---SKGCAFLKYETKEQALAAL 160
K+F+G +P+ SE ++ LF YG + ++ +LR Q SKGC F+ + T++ AAL
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRK---AAL 73
Query: 161 EAINGKHKME 170
EA N H M+
Sbjct: 74 EAQNALHNMK 83
>UNIPROTKB|Q2L7G6 [details] [associations]
symbol:HNRNPR "Heterogeneous nuclear ribonucleoprotein R"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 HOVERGEN:HBG051917
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GO:GO:0003676 GO:GO:0030529 EMBL:AL109936 UniGene:Hs.373763
HGNC:HGNC:5047 ChiTaRS:HNRNPR EMBL:DQ351905 IPI:IPI00856038
SMR:Q2L7G6 STRING:Q2L7G6 Ensembl:ENST00000427764 UCSC:uc010odw.2
Uniprot:Q2L7G6
Length = 595
Score = 178 (67.7 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 46/177 (25%), Positives = 96/177 (54%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
++K+FVG++P+ + E +L+ +F++ + ++ ++ D + +RG F+ ++ A +AV
Sbjct: 126 KIKVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAV 185
Query: 74 NACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFS-IYGTIKDL 132
C + + PG + + A+ ++LF+G +PKN ++ + FS + + D+
Sbjct: 186 KLCDSYEIRPGKHLGVCISVAN-------NRLFVGSIPKNKTKENILEEFSKVTEGLVDV 238
Query: 133 QILR--GSQQTSKGCAFLKYET-KEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
+ ++ ++G FL+YE K A A ++GK K+ G+ V V+WAD +E
Sbjct: 239 ILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVV--TVEWADPVEE 293
Score = 128 (50.1 bits), Expect = 5.4e-05, P = 5.4e-05
Identities = 83/329 (25%), Positives = 126/329 (38%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFA--LVDEVNIIKDKTTRASRGCCFVICPSRQEADKA- 72
+LFVG +PK+ T+ +L F + LVD + + + +RG CF+ + A +A
Sbjct: 209 RLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQAR 268
Query: 73 -------VNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSI 125
V N T+ A P V+ D E+ LF+ L V+E + FS
Sbjct: 269 RRLMSGKVKVWGNVVTVEWAD-P--VEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSE 325
Query: 126 YGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV-KWADTE 184
+G ++ ++ L K AF+ +E + A+ A++ +NGK ++EG + +V+ K D +
Sbjct: 326 FGKLERVKKL-------KDYAFVHFEDRGAAVKAMDEMNGK-EIEGEEIEIVLAKPPDKK 377
Query: 185 -KEXXXXXXXXXXXXXNNL---PNADSQHPSLF-----GALPMGYAPPYNGYGYQASGSY 235
KE + P P G GY P Y GY Y
Sbjct: 378 RKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYPPDYYGYEDYYDDYY 437
Query: 236 GLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGP---RNY-AMPPSGFVGSG 291
G + P ++G + G A+RG P R A PP G G
Sbjct: 438 GYDYHDYRGGYEDP-YYGY----DDGYAVRGRGGGRGGRGAPPPPRGRGAPPPRGRAGYS 492
Query: 292 YPAVPGLQYPMPYPGGMLGHRPLNNSPGS 320
P L P GG G GS
Sbjct: 493 QRGAP-LGPPRGSRGGRGGPAQQQRGRGS 520
Score = 51 (23.0 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 16/62 (25%), Positives = 28/62 (45%)
Query: 352 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 411
LF+ ++ ++ L +F FG++ K D + FV +E +A A+ M
Sbjct: 305 LFVRNLATTVTEEILEKSFSEFGKLERVKKLKD--------YAFVHFEDRGAAVKAMDEM 356
Query: 412 NG 413
NG
Sbjct: 357 NG 358
>TAIR|locus:2046298 [details] [associations]
symbol:emb2444 "embryo defective 2444" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002685 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC006135 HSSP:P11940
KO:K12831 EMBL:AY150466 IPI:IPI00516901 PIR:B84565
RefSeq:NP_179441.1 UniGene:At.20306 ProteinModelPortal:Q9ZU66
SMR:Q9ZU66 STRING:Q9ZU66 PRIDE:Q9ZU66 EnsemblPlants:AT2G18510.1
GeneID:816366 KEGG:ath:AT2G18510 TAIR:At2g18510 InParanoid:Q9ZU66
OMA:FIEYRSE PhylomeDB:Q9ZU66 ProtClustDB:CLSN2683050
Genevestigator:Q9ZU66 Uniprot:Q9ZU66
Length = 363
Score = 181 (68.8 bits), Expect = 2.4e-11, P = 2.4e-11
Identities = 87/309 (28%), Positives = 136/309 (44%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
++VG + ++E L +F + V V + KD+ T + F+ S ++AD A+
Sbjct: 27 VYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVL 86
Query: 77 HNKKTLPGASSPLQVKYADGELERLE--HKLFIGMLPKNVSEAEVSALFSIYGTI-KDLQ 133
+ K L G P++V A + + L+ LFIG L +V E + FS +G I + +
Sbjct: 87 NMIK-LHG--KPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIASNPK 143
Query: 134 ILRGSQQ-TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA---DTEKEXXX 189
I+R S+G F+ Y++ E + AA+E++ G++ S+ + V +A DT+ E
Sbjct: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYL---SNRQITVSYAYKKDTKGERHG 200
Query: 190 XXXXXXXXXXNNLPNADSQHP-SLFGALPMGYAPPYNGYGYQ-ASGSYGLMQYRLPPMQN 247
N P A P +LF P AP NG A+GS MQ P
Sbjct: 201 TPAERLLAATN--PTAQKSRPHTLFAMGPPSSAPQVNGLPRPFANGS---MQPVPIPAPR 255
Query: 248 QPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAM--PPSGF-VGSGYPAVPGLQYPMPY 304
QP PP Q + P S P+ ++M PP F G P P Q+ + +
Sbjct: 256 QPP-----PPPPQ--VYQTQPPSWPSQ--PQQHSMVPPPMQFRPPQGMPPPPPPQF-LNH 305
Query: 305 PGGMLGHRP 313
G G RP
Sbjct: 306 QQGFGGPRP 314
Score = 114 (45.2 bits), Expect = 0.00089, P = 0.00089
Identities = 27/66 (40%), Positives = 40/66 (60%)
Query: 349 GANLFIYHIPQEFGDQELGNAFQAFGRVLS-AKVFVDKATGVSKCFGFVSYESPASAQNA 407
GANLFI ++ + ++ L + F AFG + S K+ D TG S+ FGF+SY+S ++ A
Sbjct: 111 GANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAA 170
Query: 408 IAMMNG 413
I M G
Sbjct: 171 IESMTG 176
>UNIPROTKB|F6UBL3 [details] [associations]
symbol:CELF6 "CUGBP Elav-like family member 6" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107646
EMBL:AC009690 IPI:IPI00909307 HGNC:HGNC:14059
Ensembl:ENST00000437872 Bgee:F6UBL3 Uniprot:F6UBL3
Length = 133
Score = 162 (62.1 bits), Expect = 2.5e-11, P = 2.5e-11
Identities = 30/70 (42%), Positives = 46/70 (65%)
Query: 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74
+KLFVGQ+P+ + E L +F+EF + E+ ++KD+ T +GC F+ +R A KA +
Sbjct: 17 IKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQS 76
Query: 75 ACHNKKTLPG 84
A H +KTLPG
Sbjct: 77 ALHEQKTLPG 86
Score = 117 (46.2 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 24/69 (34%), Positives = 40/69 (57%)
Query: 104 KLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQ-TSKGCAFLKYETKEQALAALEA 162
KLF+G +P+ + E ++ LF +G I +L +L+ KGCAFL Y ++ AL A A
Sbjct: 18 KLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSA 77
Query: 163 INGKHKMEG 171
++ + + G
Sbjct: 78 LHEQKTLPG 86
>UNIPROTKB|C9JTN7 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000206748
EMBL:AC016700 HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00927286
ProteinModelPortal:C9JTN7 SMR:C9JTN7 STRING:C9JTN7
Ensembl:ENST00000445587 ArrayExpress:C9JTN7 Bgee:C9JTN7
Uniprot:C9JTN7
Length = 285
Score = 120 (47.3 bits), Expect = 8.7e-06, Sum P(2) = 8.7e-06
Identities = 37/156 (23%), Positives = 75/156 (48%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG + + +TEA +L +F + +I D T + CFV + A A+ A
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 77 HNKKTLPGASSPLQVKYA----DGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIKD 131
+ +K + ++V +A + + H +F+G L ++ ++ A F+ +G I D
Sbjct: 67 NGRKIM---GKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISD 123
Query: 132 LQILRG-SQQTSKGCAFLKYETKEQALAALEAINGK 166
++++ + SKG F+ + K A A++ + G+
Sbjct: 124 ARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQ 159
Score = 118 (46.6 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
++F+ + E +++ AF FGR+ A+V D ATG SK +GFVS+ + A+NAI
Sbjct: 96 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 155
Query: 411 MNG 413
M G
Sbjct: 156 MGG 158
Score = 105 (42.0 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 27/85 (31%), Positives = 46/85 (54%)
Query: 99 ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALA 158
+ + L++G L ++V+EA + LFS G K+ +++ + C F+++ A A
Sbjct: 3 DEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFHEHRHAAA 61
Query: 159 ALEAINGKHKMEGSSVPLVVKWADT 183
AL A+NG+ K+ G V V WA T
Sbjct: 62 ALAAMNGR-KIMGKEVK--VNWATT 83
Score = 49 (22.3 bits), Expect = 8.7e-06, Sum P(2) = 8.7e-06
Identities = 9/39 (23%), Positives = 18/39 (46%)
Query: 347 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDK 385
P ++ + +Q + F FG+++ +VF DK
Sbjct: 200 PSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDK 238
Score = 45 (20.9 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 17/64 (26%), Positives = 21/64 (32%)
Query: 261 GNAMRGASPDLS-SNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPG 319
G G + L P M F GY V Q P+ G G +P G
Sbjct: 208 GGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRQTQSSAPWMGPNYGVQPPQGQNG 267
Query: 320 SVSP 323
S+ P
Sbjct: 268 SMLP 271
Score = 44 (20.5 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 275 MGPRNYAM-PPSGFVGSGYPAVP 296
MGP NY + PP G GS P P
Sbjct: 253 MGP-NYGVQPPQGQNGSMLPNQP 274
>GENEDB_PFALCIPARUM|PFL1745c [details] [associations]
symbol:PFL1745c "clustered-asparagine-rich
protein" species:5833 "Plasmodium falciparum" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR001202 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020
PROSITE:PS50102 SMART:SM00360 SMART:SM00456 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AE014188 Gene3D:2.20.70.10
SUPFAM:SSF51045 RefSeq:XP_001350755.2 ProteinModelPortal:Q8I562
IntAct:Q8I562 MINT:MINT-1548460 PRIDE:Q8I562
EnsemblProtists:PFL1745c:mRNA GeneID:811401 KEGG:pfa:PFL1745c
EuPathDB:PlasmoDB:PF3D7_1236100 HOGENOM:HOG000283459 Uniprot:Q8I562
Length = 445
Score = 172 (65.6 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 35/68 (51%), Positives = 48/68 (70%)
Query: 346 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQ 405
GP G+NLFI+HIP E+ D +L F FG ++S+K+ D +TG + FGFVSY++ SAQ
Sbjct: 356 GPSGSNLFIFHIPSEWTDLDLFQHFCCFGNIISSKIQRD-STGRNSGFGFVSYDNVISAQ 414
Query: 406 NAIAMMNG 413
+AI MNG
Sbjct: 415 HAIQFMNG 422
Score = 52 (23.4 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 22/91 (24%), Positives = 39/91 (42%)
Query: 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQ-------TSK---GCAFLKY 150
L KL I +P ++++ + +L G IKD+ S++ +K A + +
Sbjct: 14 LNTKLHIQNIPPHITDVHLRSLLGNVGFIKDICYFNKSKKQMNNNNFANKKIYNTALVTF 73
Query: 151 ETKEQALAALEAINGKHKMEGSSVPLVVKWA 181
T E+AL L+ I G + K+A
Sbjct: 74 NTHEEALNVLKNIKNLIDTSGEERNIDAKFA 104
Score = 43 (20.2 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
Identities = 6/29 (20%), Positives = 15/29 (51%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEV 44
KL + +P H+T+ L ++ + ++
Sbjct: 17 KLHIQNIPPHITDVHLRSLLGNVGFIKDI 45
>UNIPROTKB|Q8I562 [details] [associations]
symbol:PFL1745c "Clustered-asparagine-rich protein"
species:36329 "Plasmodium falciparum 3D7" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR001202 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397
PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360
SMART:SM00456 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AE014188 Gene3D:2.20.70.10 SUPFAM:SSF51045
RefSeq:XP_001350755.2 ProteinModelPortal:Q8I562 IntAct:Q8I562
MINT:MINT-1548460 PRIDE:Q8I562 EnsemblProtists:PFL1745c:mRNA
GeneID:811401 KEGG:pfa:PFL1745c EuPathDB:PlasmoDB:PF3D7_1236100
HOGENOM:HOG000283459 Uniprot:Q8I562
Length = 445
Score = 172 (65.6 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 35/68 (51%), Positives = 48/68 (70%)
Query: 346 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQ 405
GP G+NLFI+HIP E+ D +L F FG ++S+K+ D +TG + FGFVSY++ SAQ
Sbjct: 356 GPSGSNLFIFHIPSEWTDLDLFQHFCCFGNIISSKIQRD-STGRNSGFGFVSYDNVISAQ 414
Query: 406 NAIAMMNG 413
+AI MNG
Sbjct: 415 HAIQFMNG 422
Score = 52 (23.4 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 22/91 (24%), Positives = 39/91 (42%)
Query: 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQ-------TSK---GCAFLKY 150
L KL I +P ++++ + +L G IKD+ S++ +K A + +
Sbjct: 14 LNTKLHIQNIPPHITDVHLRSLLGNVGFIKDICYFNKSKKQMNNNNFANKKIYNTALVTF 73
Query: 151 ETKEQALAALEAINGKHKMEGSSVPLVVKWA 181
T E+AL L+ I G + K+A
Sbjct: 74 NTHEEALNVLKNIKNLIDTSGEERNIDAKFA 104
Score = 43 (20.2 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
Identities = 6/29 (20%), Positives = 15/29 (51%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEV 44
KL + +P H+T+ L ++ + ++
Sbjct: 17 KLHIQNIPPHITDVHLRSLLGNVGFIKDI 45
>UNIPROTKB|D4A7H4 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00214634 ProteinModelPortal:D4A7H4
Ensembl:ENSRNOT00000023323 Uniprot:D4A7H4
Length = 281
Score = 120 (47.3 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 37/156 (23%), Positives = 75/156 (48%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG + + +TEA +L +F + +I D T + CFV + A A+ A
Sbjct: 5 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAM 62
Query: 77 HNKKTLPGASSPLQVKYA----DGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIKD 131
+ +K + ++V +A + + H +F+G L ++ ++ A F+ +G I D
Sbjct: 63 NGRKIM---GKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISD 119
Query: 132 LQILRG-SQQTSKGCAFLKYETKEQALAALEAINGK 166
++++ + SKG F+ + K A A++ + G+
Sbjct: 120 ARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQ 155
Score = 118 (46.6 bits), Expect = 3.1e-11, Sum P(2) = 3.1e-11
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
++F+ + E +++ AF FGR+ A+V D ATG SK +GFVS+ + A+NAI
Sbjct: 92 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 151
Query: 411 MNG 413
M G
Sbjct: 152 MGG 154
Score = 104 (41.7 bits), Expect = 3.1e-11, Sum P(2) = 3.1e-11
Identities = 27/79 (34%), Positives = 44/79 (55%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAIN 164
L++G L ++V+EA + LFS G K+ +++ + C F+++ A AAL A+N
Sbjct: 5 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFHEHRHAAAALAAMN 63
Query: 165 GKHKMEGSSVPLVVKWADT 183
G+ K+ G V V WA T
Sbjct: 64 GR-KIMGKEVK--VNWATT 79
Score = 55 (24.4 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 18/82 (21%), Positives = 30/82 (36%)
Query: 306 GGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGANLFIY--HIPQEFGD 363
G LG R + + + P S + PG N +Y + +
Sbjct: 154 GQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPG-NCTVYCGGVTSGLTE 212
Query: 364 QELGNAFQAFGRVLSAKVFVDK 385
Q + F FG+++ +VF DK
Sbjct: 213 QLMRQTFSPFGQIMEIRVFPDK 234
Score = 47 (21.6 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 223 PYNGYGY----QASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRG 266
P GY + Q+S + Y +PP Q Q G G++P G + G
Sbjct: 232 PDKGYSFIRQTQSSAPWMGPNYSVPPPQGQNG--GMLPNQPAGYRVAG 277
Score = 41 (19.5 bits), Expect = 5.4e-05, Sum P(2) = 5.4e-05
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 275 MGPRNYAMPP-SGFVGSGYPAVP 296
MGP NY++PP G G P P
Sbjct: 249 MGP-NYSVPPPQGQNGGMLPNQP 270
>UNIPROTKB|F1LUZ6 [details] [associations]
symbol:Hnrnpr "Protein Hnrnpr" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:631348 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
IPI:IPI00391659 ProteinModelPortal:F1LUZ6
Ensembl:ENSRNOT00000015971 OMA:MENVERT ArrayExpress:F1LUZ6
Uniprot:F1LUZ6
Length = 381
Score = 169 (64.5 bits), Expect = 3.7e-11, Sum P(2) = 3.7e-11
Identities = 45/175 (25%), Positives = 94/175 (53%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
++FVG++P+ + E +L+ +F++ + ++ ++ D + +RG F+ ++ A +AV
Sbjct: 135 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 194
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFS-IYGTIKDLQI 134
C + + PG + + A+ ++LF+G +PKN ++ + FS + + D+ +
Sbjct: 195 CDSYEIRPGKHLGVCISVAN-------NRLFVGSIPKNKTKENILEEFSKVTEGLVDVIL 247
Query: 135 LR--GSQQTSKGCAFLKYET-KEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
++ ++G FL+YE K A A ++GK K+ G+ V V+WAD +E
Sbjct: 248 YHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVV--TVEWADPVEE 300
Score = 122 (48.0 bits), Expect = 0.00012, P = 0.00012
Identities = 47/173 (27%), Positives = 83/173 (47%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFA--LVDEVNIIKDKTTRASRGCCFVICPSRQEADKA- 72
+LFVG +PK+ T+ +L F + LVD + + + +RG CF+ + A +A
Sbjct: 216 RLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQAR 275
Query: 73 -------VNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSI 125
V N T+ A P V+ D E+ LF+ L V+E + FS
Sbjct: 276 RRLMSGKVKVWGNVVTVEWAD-P--VEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSE 332
Query: 126 YGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178
+G ++ ++ L K AF+ +E + A+ A++ +NGK ++EG + +V+
Sbjct: 333 FGKLERVKKL-------KDYAFVHFEDRGAAVKAMDEMNGK-EIEGEEIEIVL 377
Score = 51 (23.0 bits), Expect = 3.7e-11, Sum P(2) = 3.7e-11
Identities = 16/62 (25%), Positives = 28/62 (45%)
Query: 352 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 411
LF+ ++ ++ L +F FG++ K D + FV +E +A A+ M
Sbjct: 312 LFVRNLATTVTEEILEKSFSEFGKLERVKKLKD--------YAFVHFEDRGAAVKAMDEM 363
Query: 412 NG 413
NG
Sbjct: 364 NG 365
>UNIPROTKB|F1N4Q4 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
KO:K13126 TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT EMBL:DAAA02070194 IPI:IPI00700504
RefSeq:NP_001179218.1 UniGene:Bt.60242 ProteinModelPortal:F1N4Q4
Ensembl:ENSBTAT00000026566 GeneID:511286 KEGG:bta:511286
NextBio:20869865 Uniprot:F1N4Q4
Length = 382
Score = 117 (46.2 bits), Expect = 6.4e-11, Sum P(2) = 6.4e-11
Identities = 39/159 (24%), Positives = 74/159 (46%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV--- 73
+F+ + K + L +F F + ++ D S+G +V S A++A+
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGSILSCKVVCDDN--GSKGYAYVHFDSLAAANRAIWHM 165
Query: 74 NAC--HNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKN----VSEAEVSALFSIYG 127
N +N++ G + + A E+ + F + KN + + ++ LFS YG
Sbjct: 166 NGVRLNNRQVYVGRFKFPEERAA--EVRTRDKATFTNVFVKNFGDDMDDDKLKELFSEYG 223
Query: 128 TIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 166
+ ++++R S SKG F++YET E A A+ ++GK
Sbjct: 224 PTESVKVIRDSSGKSKGFGFVRYETHEAAQKAVLDLHGK 262
Score = 107 (42.7 bits), Expect = 6.4e-11, Sum P(2) = 6.4e-11
Identities = 23/67 (34%), Positives = 36/67 (53%)
Query: 347 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQN 406
PPG ++I ++ + D++L F +FG + AKV V+ G K FG + + S A
Sbjct: 299 PPGVPIYIKNLDETIDDEKLKEEFSSFGSISRAKVMVE--VGQGKGFGVICFSSFEEATK 356
Query: 407 AIAMMNG 413
A+ MNG
Sbjct: 357 AVDEMNG 363
Score = 106 (42.4 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 38/153 (24%), Positives = 68/153 (44%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L+VG + +TE L F+ + I +D TR+ G +V +A+ A+
Sbjct: 17 KAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWAL 76
Query: 74 NACHNKKTLPGASSPLQVKYADGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N N + G L D L + +FI L K++ + LFS +G+I
Sbjct: 77 NTM-NFDLINGKPFRLMWSQPDDRLRKSGIGNIFIKNLDKSIDNRALFYLFSAFGSILSC 135
Query: 133 QILRGSQQTSKGCAFLKYETKEQALAALEAING 165
+++ SKG A++ +++ A A+ +NG
Sbjct: 136 KVVC-DDNGSKGYAYVHFDSLAAANRAIWHMNG 167
Score = 103 (41.3 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
Identities = 23/63 (36%), Positives = 36/63 (57%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N+F+ + + D +L F +G S KV D ++G SK FGFV YE+ +AQ A+
Sbjct: 200 NVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRD-SSGKSKGFGFVRYETHEAAQKAVLD 258
Query: 411 MNG 413
++G
Sbjct: 259 LHG 261
>UNIPROTKB|Q3ZC34 [details] [associations]
symbol:RBMS2 "RNA-binding motif,
single-stranded-interacting protein 2" species:9913 "Bos taurus"
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GeneTree:ENSGT00630000089747 eggNOG:NOG320163 HOGENOM:HOG000008467
HOVERGEN:HBG053108 OrthoDB:EOG469QV2 EMBL:BC102935 IPI:IPI00706755
RefSeq:NP_001029537.1 UniGene:Bt.87430 HSSP:Q15434
ProteinModelPortal:Q3ZC34 SMR:Q3ZC34 PRIDE:Q3ZC34
Ensembl:ENSBTAT00000023705 GeneID:509798 KEGG:bta:509798 CTD:5939
InParanoid:Q3ZC34 OMA:SQQMAPP NextBio:20869135 Uniprot:Q3ZC34
Length = 407
Score = 178 (67.7 bits), Expect = 7.3e-11, P = 7.3e-11
Identities = 84/320 (26%), Positives = 133/320 (41%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L++ + T+ L+ + + + + I DKTT +G FV S A KAV
Sbjct: 55 KTNLYIRGLQPSTTDQDLVKLCQSYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAV 114
Query: 74 NACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
A +S +Q + A + E+ L+I LP ++ E E+ + +G + +
Sbjct: 115 TALK--------ASGVQAQMAKQQ-EQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTR 165
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAINGKH-K----MEGSSVPLVVKWADTEKEXX 188
ILR + TS+G F + E+ E+ A + NGK+ K + S PL+ K+AD +
Sbjct: 166 ILRDTSGTSRGVGFARMESTEKCEAIITHFNGKYIKTPPGVPAPSDPLLCKFADGGPKKR 225
Query: 189 XXXXXXXXXXXNNLPNADSQHPSLF----GALPMGYAP-PYNGYGYQASGSYGLMQYRLP 243
N D +L AL G+ P PYN + L Y
Sbjct: 226 QNQGKFVQNGRAWPRNGDMGGMALTYDPSTALQNGFYPAPYNLAPNRMLTQSALSPYLPS 285
Query: 244 PMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMP 303
PM + V Q + ++ SP S M ++Y M PSG V PG+ +P+
Sbjct: 286 PMTSYQR-------VTQTSPLQAPSP---SWMHHQSYLMQPSGSV-----LTPGMDHPIS 330
Query: 304 Y-PGGMLGHRPLNNSPGSVS 322
P M+G PL G +S
Sbjct: 331 LQPASMVG--PLTQQLGHLS 348
Score = 131 (51.2 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 31/109 (28%), Positives = 52/109 (47%)
Query: 305 PG-GMLGHRPLNNSPG-SVSPAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQEFG 362
PG G+ N P S+S +A +P + NL+I +
Sbjct: 9 PGISTFGYNKNNKKPYVSLSQQMAPPSPSSSTPNSSSGSTAHDQLSKTNLYIRGLQPSTT 68
Query: 363 DQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 411
DQ+L Q++G+++S K +DK T K +GFV ++SP++AQ A+ +
Sbjct: 69 DQDLVKLCQSYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL 117
>RGD|1305742 [details] [associations]
symbol:Tia1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA;ISO] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO] [GO:0017148 "negative regulation of
translation" evidence=IEA;ISO] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA;ISO] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CH473957 eggNOG:COG0724
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 EMBL:BC087064 IPI:IPI00563419
RefSeq:NP_001012096.1 UniGene:Rn.198158 SMR:Q5PQR7 STRING:Q5PQR7
Ensembl:ENSRNOT00000023103 GeneID:312510 KEGG:rno:312510
UCSC:RGD:1305742 NextBio:664964 Genevestigator:Q5PQR7
Uniprot:Q5PQR7
Length = 375
Score = 120 (47.3 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 37/156 (23%), Positives = 75/156 (48%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG + + +TEA +L +F + +I D T + CFV + A A+ A
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 77 HNKKTLPGASSPLQVKYA----DGELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIKD 131
+ +K + ++V +A + + H +F+G L ++ ++ A F+ +G I D
Sbjct: 67 NGRKIM---GKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISD 123
Query: 132 LQILRG-SQQTSKGCAFLKYETKEQALAALEAINGK 166
++++ + SKG F+ + K A A++ + G+
Sbjct: 124 ARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQ 159
Score = 118 (46.6 bits), Expect = 7.5e-11, Sum P(2) = 7.5e-11
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
++F+ + E +++ AF FGR+ A+V D ATG SK +GFVS+ + A+NAI
Sbjct: 96 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 155
Query: 411 MNG 413
M G
Sbjct: 156 MGG 158
Score = 105 (42.0 bits), Expect = 7.5e-11, Sum P(2) = 7.5e-11
Identities = 27/85 (31%), Positives = 46/85 (54%)
Query: 99 ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALA 158
+ + L++G L ++V+EA + LFS G K+ +++ + C F+++ A A
Sbjct: 3 DEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFHEHRHAAA 61
Query: 159 ALEAINGKHKMEGSSVPLVVKWADT 183
AL A+NG+ K+ G V V WA T
Sbjct: 62 ALAAMNGR-KIMGKEVK--VNWATT 83
Score = 79 (32.9 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 26/110 (23%), Positives = 43/110 (39%)
Query: 306 GGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGANLFIY--HIPQEFGD 363
G LG R + + + P S + PG N +Y + +
Sbjct: 158 GQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPG-NCTVYCGGVTSGLTE 216
Query: 364 QELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 413
Q + F FG+++ +VF DK + F+ + S SA +AI +NG
Sbjct: 217 QLMRQTFSPFGQIMEIRVFPDKG------YSFIRFSSHESAAHAIVSVNG 260
Score = 63 (27.2 bits), Expect = 9.4e-07, Sum P(2) = 9.4e-07
Identities = 27/83 (32%), Positives = 38/83 (45%)
Query: 218 MGYAPPYNGYGYQASGSYGLMQYRLPPMQNQP--GFHGIIPPVNQG-NAMRGASPDLSSN 274
+GY P Y +G + + QY +P P G +G P QG N + ++P
Sbjct: 289 IGYPPAYGQWGQWYGNAQQIGQY-VPNGWQVPAYGMYGQ-PWSQQGFNQTQSSAPW---- 342
Query: 275 MGPRNYAMPP-SGFVGSGYPAVP 296
MGP NY++PP G G P P
Sbjct: 343 MGP-NYSVPPPQGQNGGMLPNQP 364
>UNIPROTKB|F8W8I6 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00926358
ProteinModelPortal:F8W8I6 SMR:F8W8I6 PRIDE:F8W8I6
Ensembl:ENST00000282574 ArrayExpress:F8W8I6 Bgee:F8W8I6
Uniprot:F8W8I6
Length = 385
Score = 118 (46.6 bits), Expect = 8.2e-11, Sum P(2) = 8.2e-11
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
++F+ + E +++ AF FGR+ A+V D ATG SK +GFVS+ + A+NAI
Sbjct: 107 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 166
Query: 411 MNG 413
M G
Sbjct: 167 MGG 169
Score = 107 (42.7 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 39/164 (23%), Positives = 76/164 (46%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG + + +TEA +L +F + +I D T + CFV + A A+ A
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 77 HNKKTLPG------ASSPLQVKYADGE-----LERLE-H-KLFIGMLPKNVSEAEVSALF 123
+ +K + A++P K +R + H +F+G L ++ ++ A F
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAF 126
Query: 124 SIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGK 166
+ +G I D ++++ + SKG F+ + K A A++ + G+
Sbjct: 127 APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQ 170
Score = 105 (42.0 bits), Expect = 8.2e-11, Sum P(2) = 8.2e-11
Identities = 27/85 (31%), Positives = 46/85 (54%)
Query: 99 ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALA 158
+ + L++G L ++V+EA + LFS G K+ +++ + C F+++ A A
Sbjct: 3 DEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFHEHRHAAA 61
Query: 159 ALEAINGKHKMEGSSVPLVVKWADT 183
AL A+NG+ K+ G V V WA T
Sbjct: 62 ALAAMNGR-KIMGKEVK--VNWATT 83
Score = 74 (31.1 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 18/67 (26%), Positives = 31/67 (46%)
Query: 347 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQN 406
P ++ + +Q + F FG+++ +VF DK + FV + S SA +
Sbjct: 211 PSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKG------YSFVRFNSHESAAH 264
Query: 407 AIAMMNG 413
AI +NG
Sbjct: 265 AIVSVNG 271
Score = 61 (26.5 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
Identities = 26/83 (31%), Positives = 37/83 (44%)
Query: 218 MGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPV--NQG-NAMRGASPDLSSN 274
+GY PY +G + + QY +P P + G+ QG N + ++P
Sbjct: 299 IGYPQPYGQWGQWYGNAQQIGQY-MPNGWQVPAY-GMYGQAWNQQGFNQTQSSAPW---- 352
Query: 275 MGPRNYAM-PPSGFVGSGYPAVP 296
MGP NY + PP G GS P P
Sbjct: 353 MGP-NYGVQPPQGQNGSMLPNQP 374
>UNIPROTKB|P31483 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=IEA] [GO:0017148 "negative regulation of
translation" evidence=IEA] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0048024 "regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006917 "induction of apoptosis" evidence=TAS]
[GO:0008143 "poly(A) RNA binding" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006915 EMBL:CH471053
GO:GO:0006917 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
GO:GO:0008143 HOGENOM:HOG000206748 KO:K13201 EMBL:M77142
EMBL:S70114 EMBL:AC016700 IPI:IPI00291398 IPI:IPI00333996
PIR:A39293 RefSeq:NP_071320.2 RefSeq:NP_071505.2 UniGene:Hs.413123
PDB:3BS9 PDBsum:3BS9 ProteinModelPortal:P31483 SMR:P31483
IntAct:P31483 STRING:P31483 PhosphoSite:P31483 DMDM:206729905
PaxDb:P31483 PRIDE:P31483 Ensembl:ENST00000415783
Ensembl:ENST00000433529 GeneID:7072 KEGG:hsa:7072 UCSC:uc002sgj.4
UCSC:uc002sgk.4 CTD:7072 GeneCards:GC02M070437 HGNC:HGNC:11802
MIM:603518 neXtProt:NX_P31483 PharmGKB:PA36511 HOVERGEN:HBG105006
InParanoid:P31483 OrthoDB:EOG4B5P59 PhylomeDB:P31483 ChiTaRS:TIA1
EvolutionaryTrace:P31483 GenomeRNAi:7072 NextBio:27655
ArrayExpress:P31483 Bgee:P31483 CleanEx:HS_TIA1
Genevestigator:P31483 GermOnline:ENSG00000116001 Uniprot:P31483
Length = 386
Score = 118 (46.6 bits), Expect = 8.3e-11, Sum P(2) = 8.3e-11
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
++F+ + E +++ AF FGR+ A+V D ATG SK +GFVS+ + A+NAI
Sbjct: 107 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 166
Query: 411 MNG 413
M G
Sbjct: 167 MGG 169
Score = 116 (45.9 bits), Expect = 0.00059, P = 0.00059
Identities = 62/281 (22%), Positives = 108/281 (38%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV--- 73
+FVG + +T + A F F + + ++KD T S+G FV ++ +A+ A+
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 74 ------------NACHNKKTLPGA---SSPLQVKYAD--GELERLEHKLFIGMLPKNVSE 116
N K P + S+ Q+ Y + + ++ G + ++E
Sbjct: 168 GGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTE 227
Query: 117 AEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPL 176
+ FS +G I ++++ KG +F+++ + E A A+ ++NG +EG V
Sbjct: 228 QLMRQTFSPFGQIMEIRVF-----PDKGYSFVRFNSHESAAHAIVSVNGT-TIEGHVVKC 281
Query: 177 VVKWADTEKEXXXXXXXXXXXXXNNLPNADSQHPSLFGA-------LPMGY-APPYNGYG 228
W KE P Q +G +P G+ P Y YG
Sbjct: 282 Y--WG---KETLDMINPVQQQNQIGYPQPYGQWGQWYGNAQQIGQYMPNGWQVPAYGMYG 336
Query: 229 YQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASP 269
QA G Q + P + G+ PP Q +M P
Sbjct: 337 -QAWNQQGFNQTQSSAPWMGPNY-GVQPPQGQNGSMLPNQP 375
Score = 107 (42.7 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 39/164 (23%), Positives = 76/164 (46%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG + + +TEA +L +F + +I D T + CFV + A A+ A
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 77 HNKKTLPG------ASSPLQVKYADGE-----LERLE-H-KLFIGMLPKNVSEAEVSALF 123
+ +K + A++P K +R + H +F+G L ++ ++ A F
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAF 126
Query: 124 SIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGK 166
+ +G I D ++++ + SKG F+ + K A A++ + G+
Sbjct: 127 APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQ 170
Score = 105 (42.0 bits), Expect = 8.3e-11, Sum P(2) = 8.3e-11
Identities = 27/85 (31%), Positives = 46/85 (54%)
Query: 99 ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALA 158
+ + L++G L ++V+EA + LFS G K+ +++ + C F+++ A A
Sbjct: 3 DEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFHEHRHAAA 61
Query: 159 ALEAINGKHKMEGSSVPLVVKWADT 183
AL A+NG+ K+ G V V WA T
Sbjct: 62 ALAAMNGR-KIMGKEVK--VNWATT 83
Score = 74 (31.1 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 18/67 (26%), Positives = 31/67 (46%)
Query: 347 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQN 406
P ++ + +Q + F FG+++ +VF DK + FV + S SA +
Sbjct: 211 PSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKG------YSFVRFNSHESAAH 264
Query: 407 AIAMMNG 413
AI +NG
Sbjct: 265 AIVSVNG 271
Score = 61 (26.5 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 26/83 (31%), Positives = 37/83 (44%)
Query: 218 MGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPV--NQG-NAMRGASPDLSSN 274
+GY PY +G + + QY +P P + G+ QG N + ++P
Sbjct: 300 IGYPQPYGQWGQWYGNAQQIGQY-MPNGWQVPAY-GMYGQAWNQQGFNQTQSSAPW---- 353
Query: 275 MGPRNYAM-PPSGFVGSGYPAVP 296
MGP NY + PP G GS P P
Sbjct: 354 MGP-NYGVQPPQGQNGSMLPNQP 375
>MGI|MGI:107914 [details] [associations]
symbol:Tia1 "cytotoxic granule-associated RNA binding protein
1" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0017091 "AU-rich element binding"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IMP] [GO:0042036 "negative regulation of cytokine
biosynthetic process" evidence=IMP] [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107914 GO:GO:0005634 GO:GO:0006915 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 GO:GO:0010494 eggNOG:COG0724 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:U00689
EMBL:U55862 IPI:IPI00132462 PIR:S72435 RefSeq:NP_035715.1
UniGene:Mm.333219 PDB:2DGO PDB:2RNE PDBsum:2DGO PDBsum:2RNE
ProteinModelPortal:P52912 SMR:P52912 STRING:P52912
PhosphoSite:P52912 PaxDb:P52912 PRIDE:P52912
Ensembl:ENSMUST00000095753 GeneID:21841 KEGG:mmu:21841
InParanoid:P52912 OMA:TSAPWMG EvolutionaryTrace:P52912
NextBio:301304 Bgee:P52912 Genevestigator:P52912
GermOnline:ENSMUSG00000071337 Uniprot:P52912
Length = 386
Score = 118 (46.6 bits), Expect = 8.3e-11, Sum P(2) = 8.3e-11
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
++F+ + E +++ AF FGR+ A+V D ATG SK +GFVS+ + A+NAI
Sbjct: 107 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 166
Query: 411 MNG 413
M G
Sbjct: 167 MGG 169
Score = 107 (42.7 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 39/164 (23%), Positives = 76/164 (46%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG + + +TEA +L +F + +I D T + CFV + A A+ A
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 77 HNKKTLPG------ASSPLQVKYADGE-----LERLE-H-KLFIGMLPKNVSEAEVSALF 123
+ +K + A++P K +R + H +F+G L ++ ++ A F
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAF 126
Query: 124 SIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGK 166
+ +G I D ++++ + SKG F+ + K A A++ + G+
Sbjct: 127 APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQ 170
Score = 105 (42.0 bits), Expect = 8.3e-11, Sum P(2) = 8.3e-11
Identities = 27/85 (31%), Positives = 46/85 (54%)
Query: 99 ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALA 158
+ + L++G L ++V+EA + LFS G K+ +++ + C F+++ A A
Sbjct: 3 DEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFHEHRHAAA 61
Query: 159 ALEAINGKHKMEGSSVPLVVKWADT 183
AL A+NG+ K+ G V V WA T
Sbjct: 62 ALAAMNGR-KIMGKEVK--VNWATT 83
Score = 74 (31.1 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 26/110 (23%), Positives = 42/110 (38%)
Query: 306 GGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGANLFIY--HIPQEFGD 363
G LG R + + + P S + P N +Y + +
Sbjct: 169 GQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPN-NCTVYCGGVTSGLTE 227
Query: 364 QELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 413
Q + F FG+++ +VF DK + FV + S SA +AI +NG
Sbjct: 228 QLMRQTFSPFGQIMEIRVFPDKG------YSFVRFSSHESAAHAIVSVNG 271
Score = 70 (29.7 bits), Expect = 5.6e-06, Sum P(2) = 5.6e-06
Identities = 27/83 (32%), Positives = 40/83 (48%)
Query: 218 MGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGII--PPVNQG-NAMRGASPDLSSN 274
+GY P Y +G + + QY +P P + G+ P QG N + ++P
Sbjct: 300 IGYPPTYGQWGQWYGNAQQIGQY-VPNGWQVPAY-GVYGQPWSQQGFNQTQSSAPW---- 353
Query: 275 MGPRNYAMPP-SGFVGSGYPAVP 296
MGP NY++PP G GS P+ P
Sbjct: 354 MGP-NYSVPPPQGQNGSMLPSQP 375
>FB|FBgn0038826 [details] [associations]
symbol:Syp "Syncrip" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS;IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0071011 "precatalytic
spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0046011 "regulation of oskar mRNA translation" evidence=IMP]
[GO:0007310 "oocyte dorsal/ventral axis specification"
evidence=IMP] [GO:0046843 "dorsal appendage formation"
evidence=IMP] [GO:0035770 "ribonucleoprotein granule" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0022008 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071011
GO:GO:0000398 UniGene:Dm.11889 GeneID:42460 KEGG:dme:Dmel_CG17838
FlyBase:FBgn0038826 ChiTaRS:CG17838 GenomeRNAi:42460 NextBio:828899
RefSeq:NP_650913.2 ProteinModelPortal:Q7KSA0 SMR:Q7KSA0
STRING:Q7KSA0 EnsemblMetazoa:FBtr0083959 UCSC:CG17838-RB
InParanoid:Q7KSA0 OMA:QPLGTNG Bgee:Q7KSA0 Uniprot:Q7KSA0
Length = 711
Score = 168 (64.2 bits), Expect = 8.9e-11, Sum P(2) = 8.9e-11
Identities = 47/175 (26%), Positives = 91/175 (52%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
++F G++PK M E +L+ +F+ ++ ++ ++ D T +RG FV +R+ A AV
Sbjct: 165 EVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAAVNAVRQ 224
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFS-IYGTIKDLQI 134
N + PG L++ + L +LF+G +PK+ + E+ F + + ++ I
Sbjct: 225 LDNHEIKPGKC--LKINISVPNL-----RLFVGNIPKSKGKDEILEEFGKLTAGLYEVII 277
Query: 135 LRG--SQQTSKGCAFLKYET-KEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
++ ++G FL+YE+ K +LA G+ K+ G + +V WAD ++E
Sbjct: 278 YSSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDI--IVDWADPQEE 330
Score = 58 (25.5 bits), Expect = 8.9e-11, Sum P(2) = 8.9e-11
Identities = 15/62 (24%), Positives = 30/62 (48%)
Query: 352 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 411
L++ ++ Q+ + +L F+ +G+V K D + F+ +E SA A+ +
Sbjct: 342 LYVRNLTQDVSEDKLKEQFEQYGKVERVKKIKD--------YAFIHFEDRDSAVEAMRGL 393
Query: 412 NG 413
NG
Sbjct: 394 NG 395
>RGD|631348 [details] [associations]
symbol:Hnrnpr "heterogeneous nuclear ribonucleoprotein R"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0071013 "catalytic
step 2 spliceosome" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:631348 GO:GO:0000166
HOVERGEN:HBG051917 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GO:GO:0003676 GO:GO:0030529 HSSP:O08583
IPI:IPI00194562 UniGene:Rn.195396 EMBL:AY184814
ProteinModelPortal:Q811S1 SMR:Q811S1 STRING:Q811S1 PRIDE:Q811S1
UCSC:RGD:631348 InParanoid:Q811S1 Genevestigator:Q811S1
Uniprot:Q811S1
Length = 632
Score = 173 (66.0 bits), Expect = 8.9e-11, Sum P(2) = 8.9e-11
Identities = 46/175 (26%), Positives = 94/175 (53%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
++FVG++P+ + E +L+ +F+E + ++ ++ D + +RG F+ ++ A +AV
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEEAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 225
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFS-IYGTIKDLQI 134
C + + PG + + A+ ++LF+G +PKN ++ + FS + + D+ +
Sbjct: 226 CDSYEIRPGKHLGVCISVAN-------NRLFVGSIPKNKTKENILEEFSKVTEGLVDVIL 278
Query: 135 LR--GSQQTSKGCAFLKYET-KEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
++ ++G FL+YE K A A ++GK K+ G+ V V+WAD +E
Sbjct: 279 YHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVV--TVEWADPVEE 331
Score = 132 (51.5 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 83/328 (25%), Positives = 126/328 (38%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFA--LVDEVNIIKDKTTRASRGCCFVICPSRQEADKA- 72
+LFVG +PK+ T+ +L F + LVD + + + +RG CF+ + A +A
Sbjct: 247 RLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQAR 306
Query: 73 -------VNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSI 125
V N T+ A P V+ D E+ LF+ L V+E + FS
Sbjct: 307 RRLMSGKVKVWGNVVTVEWAD-P--VEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSE 363
Query: 126 YGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV-KWADTE 184
+G ++ ++ L K AF+ +E + A+ A++ +NGK ++EG + +V+ K D +
Sbjct: 364 FGKLERVKKL-------KDYAFVHFEDRGAAVKAMDEMNGK-EIEGEEIEIVLAKPPDKK 415
Query: 185 -KEXXXXXXXXXXXXXNNL---PNADSQHP----SLFGALPMGYAPPYNGYGYQASGSYG 236
KE + P P G GY P Y GY YG
Sbjct: 416 RKERQAARQASRSTAYEDYYYHPPPRMPPPMRGRGRGGRGGYGYPPDYYGYEDYYDDYYG 475
Query: 237 LMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGP---RNY-AMPPSGFVGSGY 292
+ P ++G + G A+RG P R A PP G G
Sbjct: 476 YDYHDYRGGYEDP-YYGY----DDGYAVRGRGGGRGGRGAPPPPRGRGAPPPRGRAGYSQ 530
Query: 293 PAVPGLQYPMPYPGGMLGHRPLNNSPGS 320
P L P GG G GS
Sbjct: 531 RGAP-LGPPRGSRGGRGGPAQQQRGRGS 557
Score = 51 (23.0 bits), Expect = 8.9e-11, Sum P(2) = 8.9e-11
Identities = 16/62 (25%), Positives = 28/62 (45%)
Query: 352 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 411
LF+ ++ ++ L +F FG++ K D + FV +E +A A+ M
Sbjct: 343 LFVRNLATTVTEEILEKSFSEFGKLERVKKLKD--------YAFVHFEDRGAAVKAMDEM 394
Query: 412 NG 413
NG
Sbjct: 395 NG 396
Score = 47 (21.6 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 19/66 (28%), Positives = 24/66 (36%)
Query: 219 GYAPPYNGYGYQAS-GSYGLMQYRLP--PMQNQPGFHGIIPPVNQGNAMRGASPDLSSNM 275
G PP G G G G Q P P + G G +G RGA + N+
Sbjct: 509 GAPPPPRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGARGNRGGNV 568
Query: 276 GPRNYA 281
G + A
Sbjct: 569 GGKRKA 574
>UNIPROTKB|Q15434 [details] [associations]
symbol:RBMS2 "RNA-binding motif,
single-stranded-interacting protein 2" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0006396 eggNOG:NOG320163 HOGENOM:HOG000008467
HOVERGEN:HBG053108 OrthoDB:EOG469QV2 CTD:5939 OMA:SQQMAPP
EMBL:D28483 EMBL:BC027863 EMBL:BC072679 IPI:IPI00003706 PIR:S47660
RefSeq:NP_002889.1 UniGene:Hs.505729 UniGene:Hs.683360 PDB:1X4E
PDBsum:1X4E ProteinModelPortal:Q15434 SMR:Q15434 IntAct:Q15434
STRING:Q15434 PhosphoSite:Q15434 DMDM:55976301 PRIDE:Q15434
Ensembl:ENST00000262031 GeneID:5939 KEGG:hsa:5939 UCSC:uc001sln.2
GeneCards:GC12P056915 HGNC:HGNC:9909 HPA:HPA039225 MIM:602387
neXtProt:NX_Q15434 PharmGKB:PA34275 InParanoid:Q15434
PhylomeDB:Q15434 EvolutionaryTrace:Q15434 GenomeRNAi:5939
NextBio:23154 ArrayExpress:Q15434 Bgee:Q15434 CleanEx:HS_RBMS2
Genevestigator:Q15434 GermOnline:ENSG00000076067 Uniprot:Q15434
Length = 407
Score = 177 (67.4 bits), Expect = 9.5e-11, P = 9.5e-11
Identities = 83/321 (25%), Positives = 134/321 (41%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L++ + T+ L+ + + + + I DKTT +G FV S A KAV
Sbjct: 55 KTNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAV 114
Query: 74 NACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQ 133
A +S +Q + A + E+ L+I LP ++ E E+ + +G + +
Sbjct: 115 TALK--------ASGVQAQMAKQQ-EQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTR 165
Query: 134 ILRGSQQTSKGCAFLKYETKEQALAALEAINGKH-K----MEGSSVPLVVKWADTEKEXX 188
ILR + TS+G F + E+ E+ A + NGK+ K + S PL+ K+AD +
Sbjct: 166 ILRDTSGTSRGVGFARMESTEKCEAIITHFNGKYIKTPPGVPAPSDPLLCKFADGGPKKR 225
Query: 189 XXXXXXXXXXXNNLPNADSQHPSLFGALPMGYAPP---YNGY---GYQASGSYGLMQYRL 242
NAD G + + Y P NG+ Y + + L Q L
Sbjct: 226 QNQGKFVQNGRAWPRNAD------MGVMALTYDPTTALQNGFYPAPYNITPNRMLAQSAL 279
Query: 243 PPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPM 302
P + P V Q + ++ +P S M +Y M PSG V PG+ +P+
Sbjct: 280 SPYLSSPV--SSYQRVTQTSPLQVPNP---SWMHHHSYLMQPSGSV-----LTPGMDHPI 329
Query: 303 PY-PGGMLGHRPLNNSPGSVS 322
P M+G PL G +S
Sbjct: 330 SLQPASMMG--PLTQQLGHLS 348
Score = 120 (47.3 bits), Expect = 0.00023, P = 0.00023
Identities = 30/109 (27%), Positives = 51/109 (46%)
Query: 305 PG-GMLGHRPLNNSPG-SVSPAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQEFG 362
PG G+ N P S++ +A +P + NL+I +
Sbjct: 9 PGISTFGYNRNNKKPYVSLAQQMAPPSPSNSTPNSSSGSNGNDQLSKTNLYIRGLQPGTT 68
Query: 363 DQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 411
DQ+L Q +G+++S K +DK T K +GFV ++SP++AQ A+ +
Sbjct: 69 DQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL 117
>UNIPROTKB|D4A6U8 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036 GO:GO:0048024
OrthoDB:EOG4B5P59 IPI:IPI00778030 ProteinModelPortal:D4A6U8
Ensembl:ENSRNOT00000041366 Uniprot:D4A6U8
Length = 382
Score = 118 (46.6 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
++F+ + E +++ AF FGR+ A+V D ATG SK +GFVS+ + A+NAI
Sbjct: 103 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 162
Query: 411 MNG 413
M G
Sbjct: 163 MGG 165
Score = 107 (42.7 bits), Expect = 6.5e-07, Sum P(2) = 6.5e-07
Identities = 39/164 (23%), Positives = 76/164 (46%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG + + +TEA +L +F + +I D T + CFV + A A+ A
Sbjct: 5 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAM 62
Query: 77 HNKKTLPG------ASSPLQVKYADGE-----LERLE-H-KLFIGMLPKNVSEAEVSALF 123
+ +K + A++P K +R + H +F+G L ++ ++ A F
Sbjct: 63 NGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAF 122
Query: 124 SIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGK 166
+ +G I D ++++ + SKG F+ + K A A++ + G+
Sbjct: 123 APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQ 166
Score = 104 (41.7 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 27/79 (34%), Positives = 44/79 (55%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAIN 164
L++G L ++V+EA + LFS G K+ +++ + C F+++ A AAL A+N
Sbjct: 5 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFHEHRHAAAALAAMN 63
Query: 165 GKHKMEGSSVPLVVKWADT 183
G+ K+ G V V WA T
Sbjct: 64 GR-KIMGKEVK--VNWATT 79
Score = 79 (32.9 bits), Expect = 6.5e-07, Sum P(2) = 6.5e-07
Identities = 26/110 (23%), Positives = 43/110 (39%)
Query: 306 GGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGANLFIY--HIPQEFGD 363
G LG R + + + P S + PG N +Y + +
Sbjct: 165 GQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPG-NCTVYCGGVTSGLTE 223
Query: 364 QELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 413
Q + F FG+++ +VF DK + F+ + S SA +AI +NG
Sbjct: 224 QLMRQTFSPFGQIMEIRVFPDKG------YSFIRFSSHESAAHAIVSVNG 267
Score = 63 (27.2 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 27/83 (32%), Positives = 38/83 (45%)
Query: 218 MGYAPPYNGYGYQASGSYGLMQYRLPPMQNQP--GFHGIIPPVNQG-NAMRGASPDLSSN 274
+GY P Y +G + + QY +P P G +G P QG N + ++P
Sbjct: 296 IGYPPAYGQWGQWYGNAQQIGQY-VPNGWQVPAYGMYGQ-PWSQQGFNQTQSSAPW---- 349
Query: 275 MGPRNYAMPP-SGFVGSGYPAVP 296
MGP NY++PP G G P P
Sbjct: 350 MGP-NYSVPPPQGQNGGMLPNQP 371
>UNIPROTKB|E1BZR1 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
GO:GO:0071013 OMA:YYPPPRM EMBL:AADN02051307 EMBL:AADN02051308
IPI:IPI00597410 ProteinModelPortal:E1BZR1
Ensembl:ENSGALT00000001185 ArrayExpress:E1BZR1 Uniprot:E1BZR1
Length = 661
Score = 173 (66.0 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 46/175 (26%), Positives = 94/175 (53%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
++FVG++P+ + E +L+ +F++ + ++ ++ D + +RG F+ S+ A +AV
Sbjct: 194 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCSKDAAQEAVKL 253
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFS-IYGTIKDLQI 134
C N + PG + + A+ ++LF+G +PKN ++ + F+ + + D+ +
Sbjct: 254 CDNYEIRPGKHLGVCISVAN-------NRLFVGSIPKNKTKENILEEFNKVTEGLVDVIL 306
Query: 135 LR--GSQQTSKGCAFLKYET-KEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
++ ++G FL+YE K A A ++GK K+ G+ V V+WAD +E
Sbjct: 307 YHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVV--TVEWADPVEE 359
Score = 130 (50.8 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 84/321 (26%), Positives = 128/321 (39%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFA--LVDEVNIIKDKTTRASRGCCFVICPSRQEADKA- 72
+LFVG +PK+ T+ +L F + LVD + + + +RG CF+ + A +A
Sbjct: 275 RLFVGSIPKNKTKENILEEFNKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQAR 334
Query: 73 -------VNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSI 125
V N T+ A P V+ D E+ LF+ L V+E + FS
Sbjct: 335 RRLMSGKVKVWGNVVTVEWAD-P--VEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSE 391
Query: 126 YGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV-KWADTE 184
+G ++ ++ L K AF+ +E + A+ A+ +NGK ++EG + +V+ K D +
Sbjct: 392 FGKLERVKKL-------KDYAFVHFEDRGAAVKAMNEMNGK-EIEGEEIEIVLAKPPDKK 443
Query: 185 -KEXXXXXXXXXXXXXNNL---PNADSQHP----SLFGALPMGYAPPYNGYGYQASGSYG 236
KE + P P G GY P Y GY YG
Sbjct: 444 RKERQAARQASRSTAYEDYYYYPPPRMPPPIRGRGRGGRGGYGYPPDYYGYEDYYDDYYG 503
Query: 237 LMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMG----PRNY-AMPPSGFVGSG 291
+ P ++G + G A+RG G PR A PP G +G
Sbjct: 504 YDYHDYRGGYEDP-YYGY----DDGYAIRGRGGGGRGGRGAPPPPRGRGAPPPRG--RAG 556
Query: 292 YPAVPGLQYPMPYPGGMLGHR 312
Y + G PM P G G R
Sbjct: 557 Y-SQRGA--PMGPPRGARGGR 574
Score = 51 (23.0 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 16/62 (25%), Positives = 28/62 (45%)
Query: 352 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 411
LF+ ++ ++ L +F FG++ K D + FV +E +A A+ M
Sbjct: 371 LFVRNLATTVTEEILEKSFSEFGKLERVKKLKD--------YAFVHFEDRGAAVKAMNEM 422
Query: 412 NG 413
NG
Sbjct: 423 NG 424
>RGD|2322083 [details] [associations]
symbol:LOC100360473 "poly A binding protein, cytoplasmic 5-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:2322083 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K13126 EMBL:CH473969 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT IPI:IPI00369761 RefSeq:NP_001103836.1
UniGene:Rn.218841 Ensembl:ENSRNOT00000004462 GeneID:688518
KEGG:rno:688518 OrthoDB:EOG4DZ1VH NextBio:736678 Uniprot:D4A5H0
Length = 382
Score = 117 (46.2 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 38/159 (23%), Positives = 74/159 (46%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV--- 73
+F+ + K + L +F F + ++ D S+G +V S A++A+
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDN--GSKGYAYVHFDSLAAANRAIWHM 165
Query: 74 NAC--HNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKN----VSEAEVSALFSIYG 127
N +N++ G + + A E+ + F + KN + + ++ LFS YG
Sbjct: 166 NGVRLNNRQVYVGRFKFPEERAA--EVRTRDRATFTNVFVKNFGDDIDDEKLKKLFSEYG 223
Query: 128 TIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 166
+ ++++R + SKG F++YET E A A+ ++GK
Sbjct: 224 PTESVKVIRDATGKSKGFGFVRYETHEAAQKAVLELHGK 262
Score = 113 (44.8 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N+F+ + + D++L F +G S KV D ATG SK FGFV YE+ +AQ A+
Sbjct: 200 NVFVKNFGDDIDDEKLKKLFSEYGPTESVKVIRD-ATGKSKGFGFVRYETHEAAQKAVLE 258
Query: 411 MNG 413
++G
Sbjct: 259 LHG 261
Score = 105 (42.0 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 347 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQN 406
PPG ++I ++ + D++L F FG + AKV ++ G K FG V + S A
Sbjct: 299 PPGVPIYIKNLDETINDEKLKEEFSLFGSISRAKVMME--VGQGKGFGVVCFSSFEEASK 356
Query: 407 AIAMMNG 413
A+ MNG
Sbjct: 357 AVNEMNG 363
Score = 105 (42.0 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 38/153 (24%), Positives = 67/153 (43%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L+VG + +TE L F+ + I +D TR+ G +V +A+ A+
Sbjct: 17 KAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWAL 76
Query: 74 NACHNKKTLPGASSPLQVKYADGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N N + G L D L + +FI L K++ + LFS +G I
Sbjct: 77 NTM-NFDLINGKPFRLMWSQPDDHLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSC 135
Query: 133 QILRGSQQTSKGCAFLKYETKEQALAALEAING 165
+++ SKG A++ +++ A A+ +NG
Sbjct: 136 KVVC-DDNGSKGYAYVHFDSLAAANRAIWHMNG 167
>TAIR|locus:2094098 [details] [associations]
symbol:RBP47B "RNA-binding protein 47B" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0042991 "transcription
factor import into nucleus" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AP000419 GO:GO:0010494 eggNOG:COG0724 HSSP:P09651
GO:GO:0008143 HOGENOM:HOG000186228 EMBL:AK226472 EMBL:BT026489
EMBL:AY084821 IPI:IPI00522174 IPI:IPI00785888 RefSeq:NP_188544.1
UniGene:At.8226 ProteinModelPortal:Q0WW84 SMR:Q0WW84 STRING:Q0WW84
PaxDb:Q0WW84 PRIDE:Q0WW84 EnsemblPlants:AT3G19130.1 GeneID:821447
KEGG:ath:AT3G19130 TAIR:At3g19130 InParanoid:Q0WW84 OMA:RAVENGP
PhylomeDB:Q0WW84 ProtClustDB:CLSN2913615 Genevestigator:Q0WW84
Uniprot:Q0WW84
Length = 435
Score = 135 (52.6 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 42/160 (26%), Positives = 78/160 (48%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG + M E L + F V V +I++K T S G FV SR A++ +
Sbjct: 110 LWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQN- 168
Query: 77 HNKKTLPGASSPLQVKYAD---GELERLEH----KLFIGMLPKNVSEAEVSALFSI-YGT 128
++ +P + P ++ +A GE +E+ +F+G L +V++ + FS Y +
Sbjct: 169 YSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHETFSDRYPS 228
Query: 129 IKDLQILRGSQQ-TSKGCAFLKYETKEQALAALEAINGKH 167
+K +++ S SKG F+++ + + AL +NG +
Sbjct: 229 VKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAY 268
Score = 87 (35.7 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 23/64 (35%), Positives = 34/64 (53%)
Query: 350 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 409
A +F+ I + D++L F FG V+S K+ V K C GFV + SA++AI
Sbjct: 321 ATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKG-----C-GFVQFADRKSAEDAIE 374
Query: 410 MMNG 413
+NG
Sbjct: 375 SLNG 378
>UNIPROTKB|Q0VBZ6 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:9913 "Bos taurus" [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0042036 "negative
regulation of cytokine biosynthetic process" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 eggNOG:COG0724 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 CTD:7072 HOVERGEN:HBG105006
OrthoDB:EOG4B5P59 OMA:TSAPWMG EMBL:DAAA02031534 EMBL:BC120427
IPI:IPI00707848 RefSeq:NP_001069577.1 UniGene:Bt.91654 SMR:Q0VBZ6
Ensembl:ENSBTAT00000025528 GeneID:538533 KEGG:bta:538533
InParanoid:Q0VBZ6 NextBio:20877426 Uniprot:Q0VBZ6
Length = 384
Score = 127 (49.8 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 64/280 (22%), Positives = 111/280 (39%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV--- 73
+FVG + +T + A F F + + ++KD T S+G FV ++ +A+ A+
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 74 ------------NACHNKKTLPGA---SSPLQVKYAD--GELERLEHKLFIGMLPKNVSE 116
N K P + S+ Q+ Y + + ++ G + ++E
Sbjct: 168 GGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTE 227
Query: 117 AEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPL 176
+ FS +G I ++++ KG +F+++ + E A A+ ++NG +EG V
Sbjct: 228 QLMRQTFSPFGQIMEIRVF-----PDKGYSFVRFNSHESAAHAIVSVNGT-TIEGHVVKC 281
Query: 177 VVKWADTEKEXXXXXXXXXXXXXNNLPNADSQHPSLFG-ALPMGYAPPYNGYGYQASGSY 235
W KE P A Q +G A +G P NG+ A G Y
Sbjct: 282 Y--WG---KETLDMINPVQQQNQIGYPQAYGQWGQWYGNAQQIGQYMP-NGWQVPAYGMY 335
Query: 236 GLM--QYRLPPMQNQPGF----HGIIPPVNQGNAMRGASP 269
G Q Q+ P + +G+ PP Q +M P
Sbjct: 336 GQPWNQQGFNQTQSSPPWMGPNYGVQPPPGQNGSMMPNQP 375
Score = 118 (46.6 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
++F+ + E +++ AF FGR+ A+V D ATG SK +GFVS+ + A+NAI
Sbjct: 107 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 166
Query: 411 MNG 413
M G
Sbjct: 167 MGG 169
Score = 106 (42.4 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 39/164 (23%), Positives = 76/164 (46%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG + + +TEA +L +F + +I D T + CFV + A A+ A
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAAAALAAM 66
Query: 77 HNKKTLPG------ASSPLQVKYADGE-----LERLE-H-KLFIGMLPKNVSEAEVSALF 123
+ +K + A++P K +R + H +F+G L ++ ++ A F
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAF 126
Query: 124 SIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGK 166
+ +G I D ++++ + SKG F+ + K A A++ + G+
Sbjct: 127 APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQ 170
Score = 103 (41.3 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 27/85 (31%), Positives = 46/85 (54%)
Query: 99 ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALA 158
+ + L++G L ++V+EA + LFS G K+ +++ + C F+++ A A
Sbjct: 3 DEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFYEHRHAAA 61
Query: 159 ALEAINGKHKMEGSSVPLVVKWADT 183
AL A+NG+ K+ G V V WA T
Sbjct: 62 ALAAMNGR-KIMGKEVK--VNWATT 83
Score = 74 (31.1 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 18/67 (26%), Positives = 31/67 (46%)
Query: 347 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQN 406
P ++ + +Q + F FG+++ +VF DK + FV + S SA +
Sbjct: 211 PSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKG------YSFVRFNSHESAAH 264
Query: 407 AIAMMNG 413
AI +NG
Sbjct: 265 AIVSVNG 271
Score = 61 (26.5 bits), Expect = 6.0e-05, Sum P(2) = 6.0e-05
Identities = 26/81 (32%), Positives = 34/81 (41%)
Query: 218 MGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQ-GNAMRGASPDLSSNMG 276
+GY Y +G + + QY +P P + P NQ G +SP MG
Sbjct: 300 IGYPQAYGQWGQWYGNAQQIGQY-MPNGWQVPAYGMYGQPWNQQGFNQTQSSPPW---MG 355
Query: 277 PRNYAM-PPSGFVGSGYPAVP 296
P NY + PP G GS P P
Sbjct: 356 P-NYGVQPPPGQNGSMMPNQP 375
>CGD|CAL0004726 [details] [associations]
symbol:orf19.7368 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0043488 "regulation of mRNA
stability" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0004726 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000066 eggNOG:COG0724 HOGENOM:HOG000206748 KO:K13201
RefSeq:XP_716609.1 ProteinModelPortal:Q5A4G6 STRING:Q5A4G6
GeneID:3641737 KEGG:cal:CaO19.7368 Uniprot:Q5A4G6
Length = 510
Score = 122 (48.0 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 36/123 (29%), Positives = 58/123 (47%)
Query: 64 PSRQEA-DKAVNACHNKKTLPGASSPLQVKYA---DGELERLEHKLFIGMLPKNVSEAEV 119
P +Q++ + + N + QV A +G E L++G LPK+ SE +
Sbjct: 36 PEQQQSTESSENESQQAQQPSSQDDEKQVNAASAKEGGREVSNKILYVGNLPKSASEETI 95
Query: 120 SALFSIYGT-IKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178
LFS+ G +K ++IL + AF++Y+T E A AL +NG+ V + V
Sbjct: 96 QELFSVGGNPVKTIKILNDKNKAGFNYAFIEYDTNEVADMALNTLNGRLV---DDVEIKV 152
Query: 179 KWA 181
WA
Sbjct: 153 NWA 155
Score = 102 (41.0 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 23/66 (34%), Positives = 36/66 (54%)
Query: 348 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNA 407
P N+F+ + E D+ L NAF F + A V D T S+ +GFV++ + + A+ A
Sbjct: 171 PLFNIFVGDLSPEVNDEGLRNAFSKFESLKQAHVMWDMQTSRSRGYGFVTFGNQSDAELA 230
Query: 408 IAMMNG 413
+ MNG
Sbjct: 231 LQTMNG 236
>UNIPROTKB|F1PWU8 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 OMA:TSAPWMG EMBL:AAEX03007635
EMBL:AAEX03007634 Ensembl:ENSCAFT00000005363 Uniprot:F1PWU8
Length = 393
Score = 119 (46.9 bits), Expect = 0.00028, P = 0.00028
Identities = 62/276 (22%), Positives = 107/276 (38%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV--- 73
+FVG + +T + A F F + + ++KD T S+G FV ++ +A+ A+
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 74 ------------NACHNKKTLPGA---SSPLQVKYAD--GELERLEHKLFIGMLPKNVSE 116
N K P + S+ Q+ Y + + ++ G + ++E
Sbjct: 168 GGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTE 227
Query: 117 AEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPL 176
+ FS +G I ++++ KG +F+++ + E A A+ ++NG +EG V
Sbjct: 228 QLMRQTFSPFGQIMEIRVF-----PDKGYSFVRFNSHESAAHAIVSVNGT-TIEGHVVKC 281
Query: 177 VVKWADTEKEXXXXXXXXXXXXXNNLPNADSQHPSLFGA-------LPMGY-APPYNGYG 228
W KE P A Q +G +P G+ P Y YG
Sbjct: 282 Y--WG---KETLDMINPVQQQNQIGYPQAYGQWGQWYGNAQQIGQYMPNGWQVPAYGMYG 336
Query: 229 YQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAM 264
QA G Q + P + G+ PP G M
Sbjct: 337 -QAWNQQGFNQTQSSAPWMGPNY-GVQPPPGPGGTM 370
Score = 118 (46.6 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
++F+ + E +++ AF FGR+ A+V D ATG SK +GFVS+ + A+NAI
Sbjct: 107 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQ 166
Query: 411 MNG 413
M G
Sbjct: 167 MGG 169
Score = 106 (42.4 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 39/164 (23%), Positives = 76/164 (46%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG + + +TEA +L +F + +I D T + CFV + A A+ A
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAAAALAAM 66
Query: 77 HNKKTLPG------ASSPLQVKYADGE-----LERLE-H-KLFIGMLPKNVSEAEVSALF 123
+ +K + A++P K +R + H +F+G L ++ ++ A F
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAF 126
Query: 124 SIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGK 166
+ +G I D ++++ + SKG F+ + K A A++ + G+
Sbjct: 127 APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQ 170
Score = 103 (41.3 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 27/85 (31%), Positives = 46/85 (54%)
Query: 99 ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALA 158
+ + L++G L ++V+EA + LFS G K+ +++ + C F+++ A A
Sbjct: 3 DEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFYEHRHAAA 61
Query: 159 ALEAINGKHKMEGSSVPLVVKWADT 183
AL A+NG+ K+ G V V WA T
Sbjct: 62 ALAAMNGR-KIMGKEVK--VNWATT 83
Score = 74 (31.1 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 18/67 (26%), Positives = 31/67 (46%)
Query: 347 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQN 406
P ++ + +Q + F FG+++ +VF DK + FV + S SA +
Sbjct: 211 PSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKG------YSFVRFNSHESAAH 264
Query: 407 AIAMMNG 413
AI +NG
Sbjct: 265 AIVSVNG 271
>ZFIN|ZDB-GENE-030131-2167 [details] [associations]
symbol:tia1l "cytotoxic granule-associated RNA
binding protein 1, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-2167 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P11940 GeneTree:ENSGT00680000099967 KO:K13201
OMA:PAYNTTV HOVERGEN:HBG105006 EMBL:BX088551 EMBL:BC045485
EMBL:BC066734 IPI:IPI00499030 RefSeq:NP_956476.1 UniGene:Dr.5585
SMR:Q7ZVM6 Ensembl:ENSDART00000003957 GeneID:323447 KEGG:dre:323447
CTD:323447 InParanoid:Q7ZVM6 NextBio:20808253 Uniprot:Q7ZVM6
Length = 342
Score = 132 (51.5 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 41/156 (26%), Positives = 77/156 (49%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
L+VG + + +TEA +L +F + +I D T + CFV + A A+ A
Sbjct: 11 LYVGNLSRDVTEALILQVFSQIGPCKSCKMILDTT--GNDPYCFVEFYENRHAAAALAAM 68
Query: 77 HNKKTLPGASSPLQVKYADG----ELERLEH-KLFIGMLPKNVSEAEVSALFSIYGTIKD 131
+ +K L ++V +A + + H +F+G L +S +V A F+ +G I D
Sbjct: 69 NGRKIL---GKDMKVNWASTPSSQKKDTSNHFHVFVGDLSPEISTDDVRAAFAPFGKISD 125
Query: 132 LQILRG-SQQTSKGCAFLKYETKEQALAALEAINGK 166
++++ + SKG F+ + K A +A++ +NG+
Sbjct: 126 ARVVKDLATGKSKGYGFISFINKWDAESAIQQMNGQ 161
Score = 113 (44.8 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 23/63 (36%), Positives = 38/63 (60%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
++F+ + E ++ AF FG++ A+V D ATG SK +GF+S+ + A++AI
Sbjct: 98 HVFVGDLSPEISTDDVRAAFAPFGKISDARVVKDLATGKSKGYGFISFINKWDAESAIQQ 157
Query: 411 MNG 413
MNG
Sbjct: 158 MNG 160
Score = 95 (38.5 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 25/79 (31%), Positives = 43/79 (54%)
Query: 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAIN 164
L++G L ++V+EA + +FS G K +++ + C F+++ A AAL A+N
Sbjct: 11 LYVGNLSRDVTEALILQVFSQIGPCKSCKMILDTTGNDPYC-FVEFYENRHAAAALAAMN 69
Query: 165 GKHKMEGSSVPLVVKWADT 183
G+ K+ G + V WA T
Sbjct: 70 GR-KILGKDMK--VNWAST 85
Score = 85 (35.0 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 26/110 (23%), Positives = 44/110 (40%)
Query: 306 GGMLGHRPLNNSPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGANLFIY--HIPQEFGD 363
G LG R + + + P+ SN + +N +Y I D
Sbjct: 160 GQWLGGRQIRTNWATRKPSAPKSNNEGASSKHLSYEEVLNQSSPSNCTVYCGGIASGLSD 219
Query: 364 QELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 413
Q + F FG+++ +VF +K + FV ++S A +AI +NG
Sbjct: 220 QLMRQTFSPFGQIMEIRVFPEKG------YSFVRFDSHEGAAHAIVSVNG 263
>UNIPROTKB|F1NH81 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
Uniprot:F1NH81
Length = 573
Score = 121 (47.7 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 26/65 (40%), Positives = 36/65 (55%)
Query: 349 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 408
G NL++ ++ D+ L F FG + SAKV ++ G SK FGFV + SP A A+
Sbjct: 229 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAV 286
Query: 409 AMMNG 413
MNG
Sbjct: 287 TEMNG 291
Score = 121 (47.7 bits), Expect = 0.00030, P = 0.00030
Identities = 27/63 (42%), Positives = 37/63 (58%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N++I + ++ D+ L F FG LS KV D++ G SK FGFVS+E AQ A+
Sbjct: 128 NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDE 186
Query: 411 MNG 413
MNG
Sbjct: 187 MNG 189
Score = 117 (46.2 bits), Expect = 0.00083, P = 0.00083
Identities = 26/63 (41%), Positives = 40/63 (63%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N+FI ++ + ++ L + F AFG +LS KV D+ G SK +GFV +E+ +A+ AI
Sbjct: 36 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NG-SKGYGFVHFETQEAAERAIEK 93
Query: 411 MNG 413
MNG
Sbjct: 94 MNG 96
Score = 104 (41.7 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 32/164 (19%), Positives = 74/164 (45%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76
+F+ + K + L F F + ++ D+ S+G FV +++ A++A+
Sbjct: 37 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYGFVHFETQEAAERAIEKM 94
Query: 77 H-----NKKTLPGASSPLQVKYAD-GELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIK 130
+ ++K G + + A+ G + ++I +++ + + LF +G
Sbjct: 95 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPAL 154
Query: 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 174
++++ SKG F+ +E E A A++ +NGK ++ G +
Sbjct: 155 SVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGK-ELNGKQI 197
>POMBASE|SPBC23E6.01c [details] [associations]
symbol:SPBC23E6.01c "mRNA processing factor
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000932
"cytoplasmic mRNA processing body" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=ISO]
[GO:0071004 "U2-type prespliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC23E6.01c GO:GO:0005829 GO:GO:0000166
EMBL:CU329671 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000932
eggNOG:COG0724 GO:GO:0071004 OrthoDB:EOG44BFB8 GO:GO:0070935
HOGENOM:HOG000186228 RefSeq:NP_596601.2 ProteinModelPortal:O60176
STRING:O60176 EnsemblFungi:SPBC23E6.01c.1 GeneID:2540551
KEGG:spo:SPBC23E6.01c OMA:HEASSAM NextBio:20801677 Uniprot:O60176
Length = 473
Score = 156 (60.0 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 43/162 (26%), Positives = 84/162 (51%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L++G++ +TEA + ++ +V +I+++ T + G CFV S EA A+
Sbjct: 92 KTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAM 151
Query: 74 NACHNKKTLPGASSPLQVKYADG------ELERL-EHKLFIGMLPKNVSEAEVSALF-SI 125
+ N K +PG + ++ +A G + + E+ +F+G L NV+E +V +LF S
Sbjct: 152 SM--NNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASR 209
Query: 126 YGTIKDLQILRGSQ-QTSKGCAFLKYETKEQALAALEAINGK 166
Y + K +I+ Q S+G F+++ + +AL + G+
Sbjct: 210 YNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQ 251
Score = 63 (27.2 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 25/97 (25%), Positives = 40/97 (41%)
Query: 317 SPGSVSPAVANSNPXXXXXXXXXXXXQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRV 376
SP +V P S P Q + +F+ + + ++EL FQ FG +
Sbjct: 273 SPVNVVPV---SMPPVGFYSAAQPVPQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEI 329
Query: 377 LSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG 413
+ K+ K C GFV + + SA+ AI + G
Sbjct: 330 VYVKIPPGKG-----C-GFVQFVNRQSAEIAINQLQG 360
>TAIR|locus:2168848 [details] [associations]
symbol:AT5G40490 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 EMBL:AB009052 HOGENOM:HOG000234441
HSSP:Q61474 KO:K12741 eggNOG:NOG289504 EMBL:AY136466
IPI:IPI00518075 RefSeq:NP_198865.1 UniGene:At.30284
ProteinModelPortal:Q9FM47 SMR:Q9FM47 PaxDb:Q9FM47 PRIDE:Q9FM47
EnsemblPlants:AT5G40490.1 GeneID:834047 KEGG:ath:AT5G40490
TAIR:At5g40490 InParanoid:Q9FM47 OMA:YESEDMV PhylomeDB:Q9FM47
ProtClustDB:CLSN2916909 ArrayExpress:Q9FM47 Genevestigator:Q9FM47
Uniprot:Q9FM47
Length = 423
Score = 175 (66.7 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 81/308 (26%), Positives = 123/308 (39%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
K+FVG + + T A+ L F ++ + + I+KD+ T RG FV DK +
Sbjct: 43 KIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQD 102
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHK---LFIGMLPKNVSEAEVSALFSIYGTIKDL 132
H + G ++ G + + K +F+G +P +V + E F +G +K+
Sbjct: 103 NH---IIIGKQVEIKRTIPRGSMSSNDFKTKKIFVGGIPSSVDDDEFKEFFMQFGELKEH 159
Query: 133 QILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKEXXXXX 191
QI+R S S+G F+ YE+ E + L A + ++ G+ V +K A+ +K
Sbjct: 160 QIMRDHSTGRSRGFGFVTYES-EDMVDHLLAKGNRIELSGTQVE--IKKAEPKKPNSVTT 216
Query: 192 XXXXXXXXNNLPNADSQHPSLFGA-LPMGYA-P--PYN---GYGYQASGSYGLMQYRLPP 244
+ N + +G GY P PY GYG SG YG
Sbjct: 217 PSKRFGDSRS--NFGGGYGDGYGGGHGGGYGGPGGPYKSGGGYGGGRSGGYGGYGGEFGG 274
Query: 245 MQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPY 304
G+ G + P +G G S G N G G GY PG Y Y
Sbjct: 275 YGGG-GYGGGVGPY-RGEPALGYSGRYGGGGGGYNRGGYSMGG-GGGYGGGPGDMYGGSY 331
Query: 305 --PGGMLG 310
PGG G
Sbjct: 332 GEPGGGYG 339
>UNIPROTKB|F1PQV8 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:140886 OMA:FSEYGPT
EMBL:AAEX03026633 RefSeq:XP_549122.2 ProteinModelPortal:F1PQV8
Ensembl:ENSCAFT00000027652 GeneID:492002 KEGG:cfa:492002
Uniprot:F1PQV8
Length = 382
Score = 112 (44.5 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 37/159 (23%), Positives = 74/159 (46%)
Query: 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV--- 73
+F+ + K + L +F F + ++ D S+G +V S A++A+
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDN--GSKGYAYVHFDSLAAANRAIWHM 165
Query: 74 NAC--HNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKN----VSEAEVSALFSIYG 127
N +N++ G + + A E+ + F + KN + + ++ +FS YG
Sbjct: 166 NGVRLNNRQVYVGRFKFPEERAA--EVRTRDRATFTNVFVKNFGNDMDDEKLKEIFSGYG 223
Query: 128 TIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 166
+ ++++R + SKG F++YET E A A+ ++GK
Sbjct: 224 PTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGK 262
Score = 109 (43.4 bits), Expect = 8.3e-10, Sum P(2) = 8.3e-10
Identities = 24/63 (38%), Positives = 37/63 (58%)
Query: 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410
N+F+ + + D++L F +G S KV D A+G SK FGFV YE+ +AQ A+
Sbjct: 200 NVFVKNFGNDMDDEKLKEIFSGYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLD 258
Query: 411 MNG 413
++G
Sbjct: 259 LHG 261
Score = 108 (43.1 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 24/67 (35%), Positives = 36/67 (53%)
Query: 347 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQN 406
PPG ++I ++ + D++L F +FG + AKV V+ G K FG V + S A
Sbjct: 299 PPGVPIYIKNLDETIDDEKLKEEFSSFGSISRAKVMVE--VGQGKGFGVVCFSSFEDATK 356
Query: 407 AIAMMNG 413
A+ MNG
Sbjct: 357 AVDEMNG 363
Score = 105 (42.0 bits), Expect = 8.3e-10, Sum P(2) = 8.3e-10
Identities = 38/153 (24%), Positives = 67/153 (43%)
Query: 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73
+ L+VG + +TE L F+ + I +D TR+ G +V +A+ A+
Sbjct: 17 KAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWAL 76
Query: 74 NACHNKKTLPGASSPLQVKYADGELERLE-HKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132
N N + G L D L + +FI L K++ + LFS +G I
Sbjct: 77 NTM-NFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSC 135
Query: 133 QILRGSQQTSKGCAFLKYETKEQALAALEAING 165
+++ SKG A++ +++ A A+ +NG
Sbjct: 136 KVVC-DDNGSKGYAYVHFDSLAAANRAIWHMNG 167
>UNIPROTKB|I3LKZ4 [details] [associations]
symbol:HNRNPR "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
OMA:YYPPPRM Ensembl:ENSSSCT00000026418 Uniprot:I3LKZ4
Length = 599
Score = 169 (64.5 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 45/175 (25%), Positives = 94/175 (53%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75
++FVG++P+ + E +L+ +F++ + ++ ++ D + +RG F+ ++ A +AV
Sbjct: 166 EVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 225
Query: 76 CHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFS-IYGTIKDLQI 134
C + + PG + + A+ ++LF+G +PKN ++ + FS + + D+ +
Sbjct: 226 CDSYEIRPGKHLGVCISVAN-------NRLFVGSIPKNKTKENILEEFSKVTEGLVDVIL 278
Query: 135 LR--GSQQTSKGCAFLKYET-KEQALAALEAINGKHKMEGSSVPLVVKWADTEKE 186
++ ++G FL+YE K A A ++GK K+ G+ V V+WAD +E
Sbjct: 279 YHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVV--TVEWADPVEE 331
Score = 124 (48.7 bits), Expect = 0.00015, P = 0.00015
Identities = 61/236 (25%), Positives = 100/236 (42%)
Query: 16 KLFVGQVPKHMTEAQLLAMFKEFA--LVDEVNIIKDKTTRASRGCCFVICPSRQEADKA- 72
+LFVG +PK+ T+ +L F + LVD + + + +RG CF+ + A +A
Sbjct: 247 RLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQAR 306
Query: 73 -------VNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSI 125
V N T+ A P V+ D E+ LF+ L V+E + FS
Sbjct: 307 RRLMSGKVKVWGNVVTVEWAD-P--VEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSE 363
Query: 126 YGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV-KWADTE 184
+G ++ ++ L K AF+ +E + A+ A++ +NGK ++EG + +V+ K D +
Sbjct: 364 FGKLERVKKL-------KDYAFVHFEDRGAAVKAMDEMNGK-EIEGEEIEIVLAKPPDKK 415
Query: 185 -KEXXXXXXXXXXXXXNNL--PNADSQHPSLFGALPMG-YAPPYNGYGYQASGSYG 236
KE + P + G G Y P Y GY YG
Sbjct: 416 RKERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGXYPPDYYGYEDYYDDYYG 471
Score = 51 (23.0 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 16/62 (25%), Positives = 28/62 (45%)
Query: 352 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 411
LF+ ++ ++ L +F FG++ K D + FV +E +A A+ M
Sbjct: 343 LFVRNLATTVTEEILEKSFSEFGKLERVKKLKD--------YAFVHFEDRGAAVKAMDEM 394
Query: 412 NG 413
NG
Sbjct: 395 NG 396
WARNING: HSPs involving 631 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.134 0.402 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 435 387 0.00093 117 3 11 22 0.43 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 881
No. of states in DFA: 610 (65 KB)
Total size of DFA: 233 KB (2126 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 33.52u 0.10s 33.62t Elapsed: 00:00:04
Total cpu time: 33.61u 0.10s 33.71t Elapsed: 00:00:04
Start: Mon May 20 17:07:09 2013 End: Mon May 20 17:07:13 2013
WARNINGS ISSUED: 2