Query 013840
Match_columns 435
No_of_seqs 161 out of 2254
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 07:55:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013840.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013840hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0144 RNA-binding protein CU 100.0 3.3E-53 7.1E-58 377.1 26.7 429 6-435 26-510 (510)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 2.1E-48 4.5E-53 371.1 36.5 348 13-431 2-351 (352)
3 KOG0145 RNA-binding protein EL 100.0 5.2E-44 1.1E-48 298.1 26.2 320 11-430 38-359 (360)
4 TIGR01628 PABP-1234 polyadenyl 100.0 2.2E-41 4.8E-46 340.9 32.5 273 10-431 84-366 (562)
5 TIGR01628 PABP-1234 polyadenyl 100.0 1.1E-41 2.5E-46 343.0 29.2 256 15-431 1-263 (562)
6 KOG0117 Heterogeneous nuclear 100.0 1E-41 2.3E-46 305.3 23.9 254 8-432 77-334 (506)
7 TIGR01648 hnRNP-R-Q heterogene 100.0 1.7E-40 3.7E-45 322.4 29.6 250 10-431 54-309 (578)
8 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 2.5E-39 5.3E-44 317.7 35.1 333 13-429 1-351 (481)
9 TIGR01645 half-pint poly-U bin 100.0 7.1E-38 1.5E-42 304.3 34.4 166 12-183 105-283 (612)
10 KOG0127 Nucleolar protein fibr 100.0 8.9E-38 1.9E-42 286.2 28.3 341 14-431 5-380 (678)
11 TIGR01622 SF-CC1 splicing fact 100.0 6.6E-37 1.4E-41 301.8 33.3 167 10-183 85-265 (457)
12 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.3E-35 2.9E-40 291.3 32.0 279 15-429 97-480 (481)
13 TIGR01642 U2AF_lg U2 snRNP aux 100.0 9.7E-35 2.1E-39 290.4 31.2 275 9-427 170-500 (509)
14 KOG0148 Apoptosis-promoting RN 100.0 3.7E-35 8.1E-40 246.8 18.7 239 11-433 3-242 (321)
15 KOG0146 RNA-binding protein ET 100.0 1.4E-34 3.1E-39 242.6 13.9 333 86-435 2-371 (371)
16 KOG0123 Polyadenylate-binding 100.0 1.4E-32 3E-37 256.0 22.1 246 15-430 2-247 (369)
17 KOG0123 Polyadenylate-binding 100.0 4.5E-32 9.8E-37 252.6 23.1 265 16-431 78-351 (369)
18 KOG0124 Polypyrimidine tract-b 100.0 4.7E-32 1E-36 237.0 19.3 383 14-424 113-530 (544)
19 TIGR01659 sex-lethal sex-letha 100.0 4.5E-31 9.7E-36 244.9 20.7 170 101-432 106-278 (346)
20 TIGR01659 sex-lethal sex-letha 100.0 8.9E-31 1.9E-35 242.9 21.8 173 8-184 101-275 (346)
21 TIGR01645 half-pint poly-U bin 100.0 4.8E-29 1E-33 242.8 18.5 178 102-430 107-285 (612)
22 KOG0148 Apoptosis-promoting RN 100.0 3.2E-28 6.8E-33 205.2 17.3 160 14-184 62-238 (321)
23 KOG0110 RNA-binding protein (R 100.0 2E-28 4.2E-33 232.5 15.0 258 10-429 381-693 (725)
24 KOG0144 RNA-binding protein CU 100.0 3.9E-28 8.4E-33 217.3 13.5 172 102-432 34-209 (510)
25 KOG4212 RNA-binding protein hn 100.0 3.9E-25 8.4E-30 198.1 31.4 150 13-166 43-279 (608)
26 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 4.3E-27 9.3E-32 224.4 19.7 167 102-430 3-172 (352)
27 KOG0147 Transcriptional coacti 99.9 8.9E-28 1.9E-32 222.1 11.8 168 6-178 171-354 (549)
28 TIGR01622 SF-CC1 splicing fact 99.9 5.6E-26 1.2E-30 224.1 23.0 177 101-428 88-265 (457)
29 KOG1190 Polypyrimidine tract-b 99.9 6E-26 1.3E-30 201.9 19.5 311 11-433 25-377 (492)
30 KOG0145 RNA-binding protein EL 99.9 5E-26 1.1E-30 190.7 13.0 169 101-431 40-211 (360)
31 KOG0131 Splicing factor 3b, su 99.9 7.8E-26 1.7E-30 180.0 10.5 172 100-432 7-180 (203)
32 KOG1456 Heterogeneous nuclear 99.9 1.8E-23 4E-28 183.9 25.7 325 7-429 24-363 (494)
33 TIGR01648 hnRNP-R-Q heterogene 99.9 1.6E-24 3.4E-29 211.2 21.0 196 65-430 18-223 (578)
34 KOG4211 Splicing factor hnRNP- 99.9 2.8E-23 6.1E-28 189.9 27.6 155 10-173 6-173 (510)
35 TIGR01642 U2AF_lg U2 snRNP aux 99.9 3.1E-23 6.7E-28 207.5 23.3 83 348-430 294-376 (509)
36 KOG0117 Heterogeneous nuclear 99.9 3.4E-22 7.3E-27 180.3 24.9 170 11-191 161-338 (506)
37 KOG0127 Nucleolar protein fibr 99.9 1.3E-23 2.9E-28 193.5 14.9 192 103-432 6-199 (678)
38 KOG0131 Splicing factor 3b, su 99.9 1.8E-22 4E-27 160.8 12.0 168 10-183 5-176 (203)
39 KOG0110 RNA-binding protein (R 99.9 2.3E-21 5E-26 184.7 18.1 79 350-428 516-597 (725)
40 KOG0109 RNA-binding protein LA 99.9 2.4E-22 5.2E-27 171.5 10.1 152 104-434 4-155 (346)
41 KOG0146 RNA-binding protein ET 99.9 6.7E-22 1.5E-26 166.6 11.8 159 8-167 13-351 (371)
42 KOG0109 RNA-binding protein LA 99.8 4.4E-21 9.5E-26 163.9 9.4 145 15-179 3-147 (346)
43 KOG1190 Polypyrimidine tract-b 99.8 1.3E-18 2.8E-23 155.4 24.2 275 15-429 151-491 (492)
44 KOG1365 RNA-binding protein Fu 99.8 7.5E-20 1.6E-24 161.8 15.7 278 10-424 56-357 (508)
45 KOG0124 Polypyrimidine tract-b 99.8 5.3E-20 1.1E-24 161.8 13.3 174 103-427 114-288 (544)
46 PLN03134 glycine-rich RNA-bind 99.8 4.5E-19 9.8E-24 144.1 14.4 84 348-431 33-116 (144)
47 KOG4307 RNA binding protein RB 99.8 4.4E-17 9.6E-22 154.6 25.1 160 12-179 309-509 (944)
48 KOG0147 Transcriptional coacti 99.8 7.7E-19 1.7E-23 163.2 9.3 180 102-430 179-359 (549)
49 KOG4205 RNA-binding protein mu 99.8 2.2E-18 4.8E-23 155.1 10.6 167 13-187 5-179 (311)
50 KOG4205 RNA-binding protein mu 99.7 3.5E-18 7.6E-23 153.8 9.5 174 101-432 5-179 (311)
51 KOG1456 Heterogeneous nuclear 99.7 2.7E-15 5.9E-20 132.8 26.4 284 9-429 115-491 (494)
52 KOG1548 Transcription elongati 99.7 7.5E-16 1.6E-20 135.3 18.8 190 102-430 134-353 (382)
53 KOG0120 Splicing factor U2AF, 99.7 1.5E-16 3.3E-21 150.2 14.2 268 11-426 172-489 (500)
54 KOG1457 RNA binding protein (c 99.7 6.7E-16 1.5E-20 127.3 15.5 85 102-186 34-120 (284)
55 KOG4206 Spliceosomal protein s 99.7 1.1E-15 2.4E-20 127.5 16.3 206 103-427 10-220 (221)
56 KOG0122 Translation initiation 99.7 9.2E-17 2E-21 134.5 9.8 83 348-430 188-270 (270)
57 PF00076 RRM_1: RNA recognitio 99.7 2.6E-16 5.6E-21 112.6 10.4 70 352-422 1-70 (70)
58 KOG4211 Splicing factor hnRNP- 99.7 4.2E-16 9.1E-21 143.3 14.2 77 348-426 102-179 (510)
59 KOG4212 RNA-binding protein hn 99.7 1E-14 2.2E-19 131.7 21.6 240 102-429 44-294 (608)
60 KOG0105 Alternative splicing f 99.7 1.2E-15 2.5E-20 122.2 12.9 145 11-167 3-174 (241)
61 KOG0125 Ataxin 2-binding prote 99.7 1.1E-15 2.4E-20 133.3 12.6 80 348-429 95-174 (376)
62 KOG0105 Alternative splicing f 99.6 9.5E-15 2.1E-19 117.0 15.0 180 101-425 5-186 (241)
63 PLN03134 glycine-rich RNA-bind 99.6 1.3E-15 2.8E-20 123.9 10.3 84 11-97 31-114 (144)
64 PF14259 RRM_6: RNA recognitio 99.6 2.2E-15 4.9E-20 107.5 10.2 70 352-422 1-70 (70)
65 KOG1365 RNA-binding protein Fu 99.6 3.8E-15 8.2E-20 132.3 12.4 167 13-188 160-365 (508)
66 KOG4206 Spliceosomal protein s 99.6 2E-14 4.4E-19 120.0 15.8 158 12-181 7-219 (221)
67 KOG0107 Alternative splicing f 99.6 2.6E-15 5.6E-20 119.5 8.5 79 348-431 9-87 (195)
68 KOG0121 Nuclear cap-binding pr 99.6 2E-15 4.4E-20 113.4 7.0 81 348-428 35-115 (153)
69 KOG0149 Predicted RNA-binding 99.6 2.6E-15 5.6E-20 125.5 7.9 80 349-429 12-91 (247)
70 PLN03120 nucleic acid binding 99.6 9.4E-15 2E-19 126.8 10.7 76 349-428 4-79 (260)
71 KOG1548 Transcription elongati 99.6 7.1E-14 1.5E-18 123.0 15.9 160 11-178 131-348 (382)
72 KOG1457 RNA binding protein (c 99.6 4.3E-14 9.3E-19 116.8 12.9 156 9-167 29-272 (284)
73 KOG4207 Predicted splicing fac 99.6 4.2E-15 9E-20 121.2 6.5 82 348-429 12-93 (256)
74 KOG0114 Predicted RNA-binding 99.6 1.8E-14 3.9E-19 104.1 8.2 80 348-430 17-96 (124)
75 PLN03213 repressor of silencin 99.5 2.5E-14 5.4E-19 131.2 10.1 79 347-429 8-88 (759)
76 KOG0122 Translation initiation 99.5 5.2E-14 1.1E-18 118.1 9.0 85 10-97 185-269 (270)
77 KOG0121 Nuclear cap-binding pr 99.5 2.8E-14 6.2E-19 107.3 6.2 85 8-95 30-114 (153)
78 PF00076 RRM_1: RNA recognitio 99.5 7E-14 1.5E-18 99.8 8.1 64 17-81 1-64 (70)
79 smart00362 RRM_2 RNA recogniti 99.5 1.5E-13 3.1E-18 98.5 9.5 72 351-424 1-72 (72)
80 KOG0126 Predicted RNA-binding 99.5 5E-15 1.1E-19 118.4 1.4 80 348-427 34-113 (219)
81 KOG0130 RNA-binding protein RB 99.5 7.5E-14 1.6E-18 105.9 7.3 83 348-430 71-153 (170)
82 KOG0113 U1 small nuclear ribon 99.5 2.4E-13 5.2E-18 117.4 11.3 83 348-430 100-182 (335)
83 PLN03121 nucleic acid binding 99.5 2.2E-13 4.7E-18 116.3 10.6 76 348-427 4-79 (243)
84 KOG0106 Alternative splicing f 99.5 6.5E-14 1.4E-18 118.4 7.0 164 104-424 3-166 (216)
85 smart00360 RRM RNA recognition 99.5 2.1E-13 4.5E-18 97.3 8.7 71 354-424 1-71 (71)
86 KOG0149 Predicted RNA-binding 99.5 1.4E-13 3E-18 115.2 7.7 80 11-92 9-88 (247)
87 KOG0111 Cyclophilin-type pepti 99.5 5.1E-14 1.1E-18 115.9 4.4 84 348-431 9-92 (298)
88 PF14259 RRM_6: RNA recognitio 99.4 3.6E-13 7.7E-18 96.1 7.9 63 17-80 1-63 (70)
89 KOG0108 mRNA cleavage and poly 99.4 2.2E-13 4.7E-18 128.5 8.4 82 350-431 19-100 (435)
90 KOG0106 Alternative splicing f 99.4 1.4E-13 3E-18 116.4 6.1 143 15-176 2-165 (216)
91 KOG0114 Predicted RNA-binding 99.4 8.9E-13 1.9E-17 95.4 9.0 85 7-97 11-95 (124)
92 cd00590 RRM RRM (RNA recogniti 99.4 1.6E-12 3.4E-17 93.6 10.3 74 351-425 1-74 (74)
93 PF13893 RRM_5: RNA recognitio 99.4 8.6E-13 1.9E-17 89.3 8.0 56 366-426 1-56 (56)
94 smart00361 RRM_1 RNA recogniti 99.4 8.3E-13 1.8E-17 93.7 8.3 62 363-424 2-70 (70)
95 COG0724 RNA-binding proteins ( 99.4 2.3E-12 5E-17 119.2 10.5 79 349-427 115-193 (306)
96 PLN03120 nucleic acid binding 99.4 3.6E-12 7.9E-17 110.8 10.0 75 14-95 4-78 (260)
97 KOG0107 Alternative splicing f 99.3 3.1E-12 6.7E-17 102.1 7.5 78 12-97 8-85 (195)
98 PLN03213 repressor of silencin 99.3 8.4E-12 1.8E-16 114.8 9.5 85 7-98 3-89 (759)
99 COG0724 RNA-binding proteins ( 99.3 3.1E-11 6.7E-16 111.6 13.5 122 14-138 115-261 (306)
100 KOG0125 Ataxin 2-binding prote 99.3 6.9E-12 1.5E-16 109.8 8.3 87 8-99 90-176 (376)
101 KOG4660 Protein Mei2, essentia 99.3 4E-10 8.6E-15 106.1 19.9 69 8-81 69-137 (549)
102 KOG0126 Predicted RNA-binding 99.3 4.7E-13 1E-17 107.1 -0.8 81 10-93 31-111 (219)
103 KOG0128 RNA-binding protein SA 99.3 4.5E-13 9.8E-18 131.1 -1.5 228 13-425 570-811 (881)
104 KOG0113 U1 small nuclear ribon 99.3 2.6E-11 5.7E-16 104.9 9.4 84 8-94 95-178 (335)
105 PLN03121 nucleic acid binding 99.3 3.2E-11 6.9E-16 103.1 9.4 75 12-93 3-77 (243)
106 KOG0120 Splicing factor U2AF, 99.2 3.4E-11 7.4E-16 114.3 10.4 158 12-173 287-483 (500)
107 KOG0415 Predicted peptidyl pro 99.2 1.8E-11 3.9E-16 108.2 7.5 89 342-430 232-320 (479)
108 smart00362 RRM_2 RNA recogniti 99.2 5.3E-11 1.2E-15 85.0 8.8 64 16-81 1-64 (72)
109 KOG0130 RNA-binding protein RB 99.2 2.2E-11 4.8E-16 92.6 6.8 84 10-96 68-151 (170)
110 KOG0108 mRNA cleavage and poly 99.2 2.9E-11 6.3E-16 114.2 8.1 82 15-99 19-100 (435)
111 smart00360 RRM RNA recognition 99.2 7.4E-11 1.6E-15 83.9 8.3 63 19-81 1-63 (71)
112 KOG4207 Predicted splicing fac 99.2 2.5E-11 5.4E-16 99.4 6.3 80 12-94 11-90 (256)
113 KOG0129 Predicted RNA-binding 99.2 5.7E-10 1.2E-14 104.2 14.4 152 6-162 251-432 (520)
114 KOG4208 Nucleolar RNA-binding 99.2 1.3E-10 2.9E-15 95.6 8.3 80 348-427 48-128 (214)
115 cd00590 RRM RRM (RNA recogniti 99.1 3.7E-10 7.9E-15 81.0 9.6 64 16-80 1-64 (74)
116 KOG0153 Predicted RNA-binding 99.1 3E-10 6.5E-15 100.6 9.5 79 344-428 223-302 (377)
117 KOG0132 RNA polymerase II C-te 99.1 2.2E-10 4.8E-15 111.2 7.6 77 349-431 421-497 (894)
118 KOG0111 Cyclophilin-type pepti 99.1 8.4E-11 1.8E-15 97.2 3.4 86 12-100 8-93 (298)
119 KOG4661 Hsp27-ERE-TATA-binding 99.0 2.4E-09 5.2E-14 100.5 11.6 85 348-432 404-488 (940)
120 KOG4454 RNA binding protein (R 99.0 9.4E-11 2E-15 97.0 2.0 141 10-167 5-149 (267)
121 KOG4307 RNA binding protein RB 99.0 5.2E-08 1.1E-12 93.9 20.3 76 348-424 433-509 (944)
122 KOG0533 RRM motif-containing p 99.0 1.4E-09 3E-14 94.5 8.7 82 347-429 81-162 (243)
123 smart00361 RRM_1 RNA recogniti 99.0 1.9E-09 4.2E-14 76.3 7.3 60 28-90 2-68 (70)
124 KOG0132 RNA polymerase II C-te 99.0 1.6E-08 3.4E-13 98.7 15.5 102 13-123 420-527 (894)
125 KOG0116 RasGAP SH3 binding pro 99.0 3.7E-09 8E-14 99.5 10.3 84 348-432 287-370 (419)
126 PF13893 RRM_5: RNA recognitio 98.9 4E-09 8.8E-14 71.2 7.0 56 119-181 1-56 (56)
127 KOG0226 RNA-binding proteins [ 98.9 1.3E-09 2.8E-14 92.5 4.0 79 348-426 189-267 (290)
128 KOG0128 RNA-binding protein SA 98.9 9E-11 2E-15 115.3 -4.0 147 12-178 665-811 (881)
129 PF04059 RRM_2: RNA recognitio 98.9 2.9E-08 6.3E-13 73.7 9.6 81 350-430 2-88 (97)
130 KOG0129 Predicted RNA-binding 98.8 7.4E-08 1.6E-12 90.3 14.3 63 348-410 369-432 (520)
131 KOG0112 Large RNA-binding prot 98.8 5.1E-09 1.1E-13 103.7 5.4 167 8-185 366-532 (975)
132 KOG0151 Predicted splicing reg 98.8 2.5E-08 5.4E-13 96.3 9.0 83 346-428 171-256 (877)
133 KOG4208 Nucleolar RNA-binding 98.8 3.2E-08 7E-13 81.8 8.2 81 10-93 45-126 (214)
134 KOG4210 Nuclear localization s 98.7 4.7E-09 1E-13 94.9 3.0 81 350-431 185-266 (285)
135 KOG4209 Splicing factor RNPS1, 98.7 2E-08 4.4E-13 87.7 6.7 87 347-434 99-185 (231)
136 KOG4661 Hsp27-ERE-TATA-binding 98.7 2.9E-08 6.3E-13 93.4 7.8 83 10-95 401-483 (940)
137 KOG0415 Predicted peptidyl pro 98.7 2.2E-08 4.8E-13 88.9 6.3 81 11-94 236-316 (479)
138 KOG4454 RNA binding protein (R 98.7 4.7E-09 1E-13 87.1 1.9 80 348-429 8-87 (267)
139 KOG0112 Large RNA-binding prot 98.7 9.3E-09 2E-13 101.9 4.3 159 102-430 372-532 (975)
140 KOG0226 RNA-binding proteins [ 98.7 3.6E-08 7.8E-13 83.8 6.0 140 32-176 117-264 (290)
141 KOG0153 Predicted RNA-binding 98.6 1E-07 2.2E-12 84.8 7.5 83 6-96 220-302 (377)
142 PF04059 RRM_2: RNA recognitio 98.6 4.8E-07 1E-11 67.2 9.4 81 15-95 2-85 (97)
143 KOG4210 Nuclear localization s 98.6 8.2E-08 1.8E-12 87.0 6.1 167 12-183 86-263 (285)
144 KOG4660 Protein Mei2, essentia 98.5 6.2E-08 1.3E-12 91.6 3.8 71 347-422 73-143 (549)
145 PF11608 Limkain-b1: Limkain b 98.4 1.4E-06 3.1E-11 61.3 7.3 68 350-427 3-75 (90)
146 KOG1995 Conserved Zn-finger pr 98.4 4.6E-07 1E-11 81.5 5.4 84 347-430 64-155 (351)
147 KOG4676 Splicing factor, argin 98.4 3.5E-07 7.7E-12 82.5 4.5 64 349-417 151-214 (479)
148 KOG0116 RasGAP SH3 binding pro 98.4 7.6E-07 1.6E-11 84.1 6.9 68 9-76 283-350 (419)
149 KOG0533 RRM motif-containing p 98.3 2E-06 4.4E-11 75.0 8.3 76 102-178 83-158 (243)
150 KOG4849 mRNA cleavage factor I 98.3 0.00019 4.1E-09 64.3 20.5 71 102-173 80-153 (498)
151 KOG2193 IGF-II mRNA-binding pr 98.3 1.2E-07 2.6E-12 86.3 -0.0 155 15-184 2-157 (584)
152 PF08777 RRM_3: RNA binding mo 98.2 1.5E-06 3.2E-11 66.3 4.7 70 349-424 1-75 (105)
153 KOG4209 Splicing factor RNPS1, 98.2 2.5E-06 5.4E-11 74.7 5.3 74 7-81 94-167 (231)
154 KOG0151 Predicted splicing reg 98.1 4.2E-06 9.2E-11 81.3 6.1 82 11-95 171-255 (877)
155 KOG4676 Splicing factor, argin 97.9 6.5E-06 1.4E-10 74.6 2.2 142 16-163 9-209 (479)
156 KOG2193 IGF-II mRNA-binding pr 97.9 2.7E-06 5.8E-11 77.7 -0.3 73 351-427 82-155 (584)
157 PF08777 RRM_3: RNA binding mo 97.8 5.4E-05 1.2E-09 57.8 6.2 59 15-79 2-60 (105)
158 PF11608 Limkain-b1: Limkain b 97.7 0.00025 5.4E-09 50.2 7.7 67 15-94 3-74 (90)
159 PF14605 Nup35_RRM_2: Nup53/35 97.7 0.00013 2.7E-09 48.0 5.5 52 350-408 2-53 (53)
160 KOG2202 U2 snRNP splicing fact 97.6 2.5E-05 5.5E-10 67.2 1.5 63 364-427 83-146 (260)
161 COG5175 MOT2 Transcriptional r 97.6 0.00017 3.8E-09 64.2 6.6 80 350-429 115-203 (480)
162 KOG2314 Translation initiation 97.5 0.00032 7E-09 66.9 8.1 76 348-424 57-139 (698)
163 PF14605 Nup35_RRM_2: Nup53/35 97.5 0.00025 5.5E-09 46.6 5.3 53 14-73 1-53 (53)
164 KOG1996 mRNA splicing factor [ 97.5 0.00031 6.8E-09 61.5 7.0 82 346-427 278-365 (378)
165 PF05172 Nup35_RRM: Nup53/35/4 97.4 0.00078 1.7E-08 50.6 7.1 72 348-427 5-90 (100)
166 KOG1995 Conserved Zn-finger pr 97.4 0.00028 6E-09 64.0 5.5 84 9-95 61-152 (351)
167 KOG3152 TBP-binding protein, a 97.4 0.00011 2.3E-09 63.3 2.5 73 348-420 73-157 (278)
168 PF08952 DUF1866: Domain of un 97.3 0.0015 3.2E-08 52.1 8.0 75 345-428 23-106 (146)
169 KOG4849 mRNA cleavage factor I 97.2 0.00036 7.8E-09 62.5 4.3 72 10-81 76-149 (498)
170 KOG0115 RNA-binding protein p5 97.2 0.0011 2.4E-08 57.2 7.0 62 350-412 32-93 (275)
171 COG5175 MOT2 Transcriptional r 97.2 0.0012 2.7E-08 59.0 6.9 83 13-98 113-204 (480)
172 KOG1855 Predicted RNA-binding 97.1 0.00054 1.2E-08 63.3 4.5 67 348-414 230-309 (484)
173 KOG1855 Predicted RNA-binding 97.1 0.00052 1.1E-08 63.4 4.2 72 8-79 225-309 (484)
174 KOG2314 Translation initiation 96.9 0.0017 3.6E-08 62.2 6.1 72 102-173 58-135 (698)
175 KOG3152 TBP-binding protein, a 96.9 0.00079 1.7E-08 58.1 3.5 72 13-84 73-156 (278)
176 PF10309 DUF2414: Protein of u 96.9 0.0068 1.5E-07 40.8 7.1 54 14-76 5-62 (62)
177 PF08675 RNA_bind: RNA binding 96.9 0.0057 1.2E-07 43.4 6.7 56 13-77 8-63 (87)
178 KOG0115 RNA-binding protein p5 96.8 0.0034 7.3E-08 54.3 6.3 88 69-165 7-94 (275)
179 PF05172 Nup35_RRM: Nup53/35/4 96.7 0.0061 1.3E-07 45.8 6.5 81 12-96 4-91 (100)
180 PF15023 DUF4523: Protein of u 96.6 0.013 2.9E-07 46.0 7.6 74 346-427 83-160 (166)
181 PF10309 DUF2414: Protein of u 96.6 0.016 3.4E-07 39.1 6.9 55 349-411 5-62 (62)
182 PF08675 RNA_bind: RNA binding 96.5 0.011 2.4E-07 41.9 5.9 56 348-412 8-63 (87)
183 KOG2416 Acinus (induces apopto 96.4 0.0029 6.3E-08 61.0 3.7 80 10-95 440-520 (718)
184 KOG2416 Acinus (induces apopto 96.3 0.004 8.7E-08 60.1 3.8 79 344-428 439-521 (718)
185 KOG2202 U2 snRNP splicing fact 96.3 0.0031 6.7E-08 54.7 2.7 61 117-178 83-144 (260)
186 KOG2591 c-Mpl binding protein, 96.1 0.58 1.2E-05 45.5 16.8 58 102-165 175-234 (684)
187 PF07576 BRAP2: BRCA1-associat 96.0 0.073 1.6E-06 40.8 9.0 67 13-81 12-79 (110)
188 PF04847 Calcipressin: Calcipr 95.7 0.028 6.1E-07 47.5 6.1 62 362-429 8-71 (184)
189 PF03467 Smg4_UPF3: Smg-4/UPF3 95.4 0.015 3.3E-07 49.0 3.3 74 11-84 4-83 (176)
190 KOG2135 Proteins containing th 95.2 0.011 2.4E-07 55.6 2.0 74 348-428 371-445 (526)
191 KOG1996 mRNA splicing factor [ 95.0 0.069 1.5E-06 47.2 6.4 62 28-92 300-362 (378)
192 PF03467 Smg4_UPF3: Smg-4/UPF3 95.0 0.058 1.2E-06 45.5 5.8 71 348-418 6-82 (176)
193 PF07576 BRAP2: BRCA1-associat 95.0 0.39 8.5E-06 36.9 9.6 67 350-418 14-81 (110)
194 KOG4574 RNA-binding protein (c 95.0 0.13 2.7E-06 52.4 8.6 74 351-430 300-375 (1007)
195 KOG2068 MOT2 transcription fac 94.6 0.015 3.2E-07 52.8 1.1 80 350-429 78-163 (327)
196 KOG0804 Cytoplasmic Zn-finger 94.4 0.15 3.3E-06 48.1 7.4 71 10-82 70-141 (493)
197 PF11767 SET_assoc: Histone ly 93.8 0.37 8E-06 33.1 6.4 55 360-423 11-65 (66)
198 KOG2591 c-Mpl binding protein, 93.6 0.12 2.6E-06 50.0 5.1 68 348-422 174-245 (684)
199 PF15023 DUF4523: Protein of u 93.5 0.5 1.1E-05 37.4 7.4 76 9-95 81-160 (166)
200 KOG4285 Mitotic phosphoprotein 93.0 4.8 0.0001 36.3 13.6 64 349-420 197-260 (350)
201 PF08952 DUF1866: Domain of un 92.7 0.29 6.2E-06 39.3 5.2 54 117-179 51-104 (146)
202 KOG2253 U1 snRNP complex, subu 92.6 0.2 4.3E-06 49.6 5.2 69 348-425 39-107 (668)
203 PF07292 NID: Nmi/IFP 35 domai 92.4 0.11 2.3E-06 38.0 2.3 66 59-124 1-74 (88)
204 KOG4574 RNA-binding protein (c 92.0 0.8 1.7E-05 46.9 8.6 70 109-184 305-374 (1007)
205 PF03880 DbpA: DbpA RNA bindin 91.7 0.76 1.7E-05 32.5 6.1 59 359-426 11-74 (74)
206 KOG4285 Mitotic phosphoprotein 90.4 1.4 2.9E-05 39.6 7.4 75 102-185 197-271 (350)
207 KOG0804 Cytoplasmic Zn-finger 88.9 1.8 3.8E-05 41.2 7.4 68 349-418 74-142 (493)
208 KOG2068 MOT2 transcription fac 88.2 0.26 5.6E-06 44.9 1.5 79 13-94 76-160 (327)
209 KOG4213 RNA-binding protein La 86.0 0.57 1.2E-05 38.5 2.2 69 4-76 101-170 (205)
210 PF07292 NID: Nmi/IFP 35 domai 84.3 0.34 7.3E-06 35.4 0.2 24 348-371 51-74 (88)
211 PF11767 SET_assoc: Histone ly 81.3 7.6 0.00016 26.7 5.9 48 25-81 11-58 (66)
212 PF03468 XS: XS domain; Inter 81.1 2.9 6.2E-05 32.5 4.3 54 350-406 9-71 (116)
213 PF07530 PRE_C2HC: Associated 81.1 3 6.4E-05 28.9 3.9 64 364-430 2-66 (68)
214 KOG2891 Surface glycoprotein [ 80.4 1.4 3E-05 38.9 2.5 82 348-429 148-268 (445)
215 KOG4019 Calcineurin-mediated s 80.2 1.5 3.2E-05 36.4 2.5 76 348-429 9-90 (193)
216 KOG2135 Proteins containing th 77.1 1.2 2.5E-05 42.6 1.2 77 12-98 370-447 (526)
217 PF04847 Calcipressin: Calcipr 75.8 5.4 0.00012 33.9 4.7 58 28-94 9-68 (184)
218 PF14111 DUF4283: Domain of un 74.1 6.8 0.00015 32.0 5.0 104 25-137 28-140 (153)
219 smart00596 PRE_C2HC PRE_C2HC d 73.9 6.8 0.00015 27.0 3.9 64 364-430 2-66 (69)
220 KOG2318 Uncharacterized conser 72.4 18 0.00039 35.9 7.8 80 346-425 171-302 (650)
221 KOG2318 Uncharacterized conser 72.3 15 0.00034 36.3 7.3 81 102-183 174-307 (650)
222 PF10567 Nab6_mRNP_bdg: RNA-re 72.2 7.2 0.00016 35.2 4.7 83 345-427 11-106 (309)
223 PF15513 DUF4651: Domain of un 68.5 11 0.00024 25.3 3.9 14 29-42 9-22 (62)
224 PF10567 Nab6_mRNP_bdg: RNA-re 67.4 14 0.00031 33.3 5.5 60 101-160 14-81 (309)
225 KOG4410 5-formyltetrahydrofola 67.2 16 0.00034 32.7 5.7 51 11-66 327-377 (396)
226 PF03880 DbpA: DbpA RNA bindin 65.9 33 0.00071 24.1 6.3 56 112-176 11-71 (74)
227 PF03468 XS: XS domain; Inter 65.5 7.4 0.00016 30.2 3.1 51 16-69 10-69 (116)
228 KOG4365 Uncharacterized conser 58.3 1.6 3.4E-05 41.3 -2.0 80 349-429 3-82 (572)
229 KOG4483 Uncharacterized conser 57.9 21 0.00045 33.7 5.0 54 15-75 392-446 (528)
230 KOG4410 5-formyltetrahydrofola 57.2 23 0.0005 31.7 4.9 49 348-402 329-378 (396)
231 PRK14548 50S ribosomal protein 55.7 43 0.00092 24.3 5.3 53 356-411 27-81 (84)
232 KOG2253 U1 snRNP complex, subu 55.4 8 0.00017 38.9 2.1 59 12-79 38-96 (668)
233 TIGR03636 L23_arch archaeal ri 54.5 56 0.0012 23.2 5.7 57 352-411 16-74 (77)
234 KOG1924 RhoA GTPase effector D 53.2 1.6E+02 0.0036 30.9 10.6 101 257-362 513-615 (1102)
235 PF15513 DUF4651: Domain of un 49.7 36 0.00078 23.0 3.8 19 364-382 9-27 (62)
236 KOG2295 C2H2 Zn-finger protein 48.8 2.5 5.4E-05 41.3 -2.4 72 347-418 229-300 (648)
237 KOG4008 rRNA processing protei 47.2 18 0.00039 31.5 2.7 34 9-42 35-68 (261)
238 cd04904 ACT_AAAH ACT domain of 45.2 1E+02 0.0022 21.4 7.4 52 114-165 12-65 (74)
239 KOG4483 Uncharacterized conser 43.6 45 0.00098 31.5 4.8 55 102-162 391-446 (528)
240 KOG2295 C2H2 Zn-finger protein 41.1 7.7 0.00017 38.1 -0.4 68 13-80 230-297 (648)
241 KOG1295 Nonsense-mediated deca 35.8 51 0.0011 31.1 4.0 76 11-86 4-82 (376)
242 cd04908 ACT_Bt0572_1 N-termina 35.3 1.4E+02 0.003 20.0 7.2 58 352-416 6-64 (66)
243 PRK11901 hypothetical protein; 35.2 1.5E+02 0.0031 27.7 6.7 60 348-412 244-305 (327)
244 KOG4213 RNA-binding protein La 34.7 52 0.0011 27.5 3.4 58 102-163 111-170 (205)
245 COG5193 LHP1 La protein, small 33.9 18 0.00039 34.2 0.7 60 349-408 174-243 (438)
246 KOG3424 40S ribosomal protein 31.9 1.6E+02 0.0034 22.8 5.3 47 25-72 34-85 (132)
247 cd04880 ACT_AAAH-PDT-like ACT 31.1 1.8E+02 0.0039 20.0 6.9 52 114-165 11-66 (75)
248 COG5193 LHP1 La protein, small 30.7 19 0.00041 34.1 0.3 64 11-74 171-244 (438)
249 cd04931 ACT_PAH ACT domain of 28.9 2.4E+02 0.0051 20.7 7.6 51 115-165 27-80 (90)
250 KOG1295 Nonsense-mediated deca 26.8 79 0.0017 29.9 3.6 71 103-173 8-82 (376)
251 COG3254 Uncharacterized conser 26.2 2.6E+02 0.0055 21.2 5.5 42 29-73 27-68 (105)
252 PF11411 DNA_ligase_IV: DNA li 24.6 61 0.0013 19.2 1.6 16 24-39 19-34 (36)
253 PF03439 Spt5-NGN: Early trans 23.8 88 0.0019 22.6 2.8 24 55-78 43-66 (84)
254 COG0445 GidA Flavin-dependent 23.2 2.9E+02 0.0062 28.1 6.8 82 55-136 235-335 (621)
255 PF08734 GYD: GYD domain; Int 23.1 3.1E+02 0.0067 20.1 6.3 45 363-411 22-67 (91)
256 PRK11901 hypothetical protein; 22.2 1.3E+02 0.0029 27.9 4.1 50 114-165 254-306 (327)
257 TIGR01033 DNA-binding regulato 21.6 3.7E+02 0.0081 23.9 6.8 57 346-409 91-157 (238)
258 PF02714 DUF221: Domain of unk 21.4 1.8E+02 0.0038 27.2 5.1 56 59-124 1-56 (325)
259 PRK10629 EnvZ/OmpR regulon mod 21.3 4.2E+02 0.0091 21.0 7.1 72 348-427 34-109 (127)
260 cd04930 ACT_TH ACT domain of t 21.2 3.2E+02 0.007 21.1 5.6 51 115-165 54-106 (115)
261 PRK14548 50S ribosomal protein 21.0 2E+02 0.0044 20.9 4.1 53 109-163 27-81 (84)
262 PF00403 HMA: Heavy-metal-asso 20.8 2.6E+02 0.0055 18.3 5.5 54 351-410 1-58 (62)
263 PF13046 DUF3906: Protein of u 20.7 1.3E+02 0.0029 20.4 2.8 32 28-61 32-63 (64)
264 COG0217 Uncharacterized conser 20.1 5.5E+02 0.012 22.8 7.2 59 345-410 90-158 (241)
265 PF11823 DUF3343: Protein of u 20.1 1.3E+02 0.0029 20.8 3.0 26 393-418 3-28 (73)
No 1
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=3.3e-53 Score=377.06 Aligned_cols=429 Identities=45% Similarity=0.701 Sum_probs=311.0
Q ss_pred ccccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCC
Q 013840 6 KEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGA 85 (435)
Q Consensus 6 ~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~ 85 (435)
..+..+.+..++||+-||..++|.||+++|.+||.|.+|.+++||.|+.++|||||.|.+.++|.+|+.+||+.+++.|+
T Consensus 26 ~~d~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~ 105 (510)
T KOG0144|consen 26 HTDNPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGM 105 (510)
T ss_pred CCCCCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCC
Confidence 34556677889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeccCchhccc--cceEEEecCCCCCCHHHHHHhhhccCCeeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHH
Q 013840 86 SSPLQVKYADGELERL--EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAI 163 (435)
Q Consensus 86 ~~~i~~~~~~~~~~~~--~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~~~~~~g~afV~f~~~e~a~~a~~~l 163 (435)
-.+|.+++++.+.++. +++|||+.|++.++|.+|+++|++||.|++|.|.++.++.++|||||+|...|.|..||+.|
T Consensus 106 ~~pvqvk~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ 185 (510)
T KOG0144|consen 106 HHPVQVKYADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKAL 185 (510)
T ss_pred CcceeecccchhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhh
Confidence 9999999999988875 88999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcCCCCcceEEEEecCCHHHHHHHHHHHHHhhhc-cCCCC-CCCCCCccCCCCCCCCCCCCCCCccCCC-CcCcccc
Q 013840 164 NGKHKMEGSSVPLVVKWADTEKERQARRAQKAQSQAN-NLPNA-DSQHPSLFGALPMGYAPPYNGYGYQASG-SYGLMQY 240 (435)
Q Consensus 164 ~~~~~~~g~~~~l~v~~a~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 240 (435)
||..-++||..+|.|+||.+++++..++.++...+.. .+.+. ........+.+++++.++...+.+.... .++ .-+
T Consensus 186 ng~~tmeGcs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~-g~~ 264 (510)
T KOG0144|consen 186 NGTQTMEGCSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLG-GLP 264 (510)
T ss_pred ccceeeccCCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccc-ccc
Confidence 9999999999999999999999888887644443322 22222 4555666777888887776666554333 333 223
Q ss_pred CCCCCC----CCCCccCcC-CCC-CCCCCCcC--CCCCCC-CCCC-C------------------------CccCCCCCC
Q 013840 241 RLPPMQ----NQPGFHGII-PPV-NQGNAMRG--ASPDLS-SNMG-P------------------------RNYAMPPSG 286 (435)
Q Consensus 241 ~~~~~~----~~~~~~~~~-~~~-~~~~~~~~--~~~~~~-~~~~-~------------------------~~~~~~~~~ 286 (435)
.+.+++ ++..+..+. .+. ...++..+ +....+ +... + ..+..++..
T Consensus 265 ~L~~l~a~~~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~ 344 (510)
T KOG0144|consen 265 PLGPLNATQLQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPAN 344 (510)
T ss_pred CCCCcchhHHHHHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchh
Confidence 333333 111111111 100 00111111 000000 0000 0 000000101
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCccC----CCCC---------CCCCCCCCCCCCcccCCCC
Q 013840 287 FVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGS----VSPAVA----NSNP---------STSSSGGTGSGGQIEGPPG 349 (435)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~----~~~~---------~~~~~~~~~~~~~~~~~~~ 349 (435)
+.-..--+..+.+.+.......+....+.+..+. .++... .+.. ....+.........+++.+
T Consensus 345 ~n~~~~~a~a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeG 424 (510)
T KOG0144|consen 345 YNLAGGMAGAGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEG 424 (510)
T ss_pred cccccccccccccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCc
Confidence 1000000001111111111222222222111110 011100 0000 0123333455666788899
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEccCC
Q 013840 350 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRDN 429 (435)
Q Consensus 350 ~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a~~~ 429 (435)
.++||.+||.+.-+.||...|..||.|.+.++..|+.+|.+++|+||.|++..+|..||..|||+.++.++++|++.+++
T Consensus 425 anlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~ 504 (510)
T KOG0144|consen 425 ANLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDR 504 (510)
T ss_pred cceeeeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 013840 430 KQNKPY 435 (435)
Q Consensus 430 ~~~~~~ 435 (435)
....||
T Consensus 505 ~np~~~ 510 (510)
T KOG0144|consen 505 NNPYPR 510 (510)
T ss_pred CCCCCC
Confidence 999887
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=2.1e-48 Score=371.06 Aligned_cols=348 Identities=23% Similarity=0.380 Sum_probs=237.9
Q ss_pred CCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCceeee
Q 013840 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVK 92 (435)
Q Consensus 13 ~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~~~ 92 (435)
..++|||+|||+++|+++|+++|+.||+|.+|+++.|+.+++++|||||+|.+.++|.+||+.|++.. +.| +.+++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~-l~g--~~i~v~ 78 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLR-LQN--KTIKVS 78 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEE-ECC--eeEEEE
Confidence 36799999999999999999999999999999999999999999999999999999999999999975 444 788888
Q ss_pred ccCchhcc-ccceEEEecCCCCCCHHHHHHhhhccCCeeEEEEecCC-CCCcccEEEEEeCCHHHHHHHHHHHcCCCcCC
Q 013840 93 YADGELER-LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKME 170 (435)
Q Consensus 93 ~~~~~~~~-~~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~-~~~~~g~afV~f~~~e~a~~a~~~l~~~~~~~ 170 (435)
++.+.... ...+|||+|||.++++++|+++|+.||.|..+.+..+. ++.++|+|||+|.+.++|++|++.|+|.. +.
T Consensus 79 ~a~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~-~~ 157 (352)
T TIGR01661 79 YARPSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTT-PS 157 (352)
T ss_pred eecccccccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCc-cC
Confidence 87665432 35689999999999999999999999999999997765 67889999999999999999999999975 77
Q ss_pred CCcceEEEEecCCHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCCCCCCCCCCCCCccCCCCcCccccCCCCCCCCCC
Q 013840 171 GSSVPLVVKWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPG 250 (435)
Q Consensus 171 g~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (435)
|+..++.+.++........+................ .+..... ......+... ....+. +... ..
T Consensus 158 g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~---------~~~~~~--~~~~-~~ 222 (352)
T TIGR01661 158 GCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTR--VPLSTIL-TAAGIGPMHH---------AAARFR--PSAG-DF 222 (352)
T ss_pred CCceeEEEEECCCCCcCCchhcCchhhcccCcccCC--CCccccc-cccCCCCccC---------cccccc--cCcc-hh
Confidence 877789999987654221111110000000000000 0000000 0000000000 000000 0000 00
Q ss_pred ccCcCCCCCCCCCCcCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCC
Q 013840 251 FHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNP 330 (435)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (435)
...+...... ....+........ ...... .
T Consensus 223 ~~~~~~~~~~--------~~~~~~~~~~~~~----------------~~~~~~----------------~---------- 252 (352)
T TIGR01661 223 TAVLAHQQQQ--------HAVAQQHAAQRAS----------------PPATDG----------------Q---------- 252 (352)
T ss_pred hhhhhhhhhh--------cccccccccccCC----------------Cccccc----------------c----------
Confidence 0000000000 0000000000000 000000 0
Q ss_pred CCCCCCCCCCCCcccCCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHh
Q 013840 331 STSSSGGTGSGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410 (435)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 410 (435)
.... ............+.+|||+|||..+++++|+++|++||.|.+|+|++++.+|.++|||||+|.+.++|.+|+..
T Consensus 253 -~~~~-~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~ 330 (352)
T TIGR01661 253 -TAGL-AAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILS 330 (352)
T ss_pred -cccc-ccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHH
Confidence 0000 00000001123457899999999999999999999999999999999988999999999999999999999999
Q ss_pred cCCceeCCeEEEEEEccCCcC
Q 013840 411 MNGCQLGGKKLKVQLKRDNKQ 431 (435)
Q Consensus 411 l~g~~l~gr~i~v~~a~~~~~ 431 (435)
|||..|+||+|+|+|+.+|.+
T Consensus 331 lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 331 LNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred hCCCEECCeEEEEEEccCCCC
Confidence 999999999999999998865
No 3
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=5.2e-44 Score=298.14 Aligned_cols=320 Identities=25% Similarity=0.413 Sum_probs=240.0
Q ss_pred ccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCcee
Q 013840 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (435)
Q Consensus 11 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~ 90 (435)
+...+.|.|.=||..+|++||+.+|...|+|++|++++||.++.+.||+||.|.+++||++|+..|||..+ ..+.|+
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrL---Q~KTIK 114 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRL---QNKTIK 114 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceee---ccceEE
Confidence 34456788999999999999999999999999999999999999999999999999999999999999865 559999
Q ss_pred eeccCchhcc-ccceEEEecCCCCCCHHHHHHhhhccCCeeEEEEecCC-CCCcccEEEEEeCCHHHHHHHHHHHcCCCc
Q 013840 91 VKYADGELER-LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHK 168 (435)
Q Consensus 91 ~~~~~~~~~~-~~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~-~~~~~g~afV~f~~~e~a~~a~~~l~~~~~ 168 (435)
++|+.+.... .+..+||.+||+.+|..||.++|+.||.|..-+++.+. +|.++|.+||+|+..++|++||+.|||..
T Consensus 115 VSyARPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~- 193 (360)
T KOG0145|consen 115 VSYARPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQK- 193 (360)
T ss_pred EEeccCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCC-
Confidence 9999876543 36789999999999999999999999988777776664 89999999999999999999999999976
Q ss_pred CCCCcceEEEEecCCHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCCCCCCCCCCCCCccCCCCcCccccCCCCCCCC
Q 013840 169 MEGSSVPLVVKWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQ 248 (435)
Q Consensus 169 ~~g~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (435)
-.|+.-++.|+++....+.......... -.-|..+...+. ...+....+.+.. ++...+
T Consensus 194 P~g~tepItVKFannPsq~t~~a~ls~l---y~sp~rr~~Gp~-------hh~~~r~r~~~~~-----------~~~~~~ 252 (360)
T KOG0145|consen 194 PSGCTEPITVKFANNPSQKTNQALLSQL---YQSPARRYGGPM-------HHQAQRFRLDNLL-----------NPHAAQ 252 (360)
T ss_pred CCCCCCCeEEEecCCcccccchhhhHHh---hcCccccCCCcc-------cchhhhhcccccc-----------chhhhh
Confidence 7888889999999876432221111000 000000000000 0000000000000 000000
Q ss_pred CCccCcCCCCCCCCCCcCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCC
Q 013840 249 PGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANS 328 (435)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (435)
..|..|. ...+.++..
T Consensus 253 ~rfsP~~------------------------------------~d~m~~l~~---------------------------- 268 (360)
T KOG0145|consen 253 ARFSPMT------------------------------------IDGMSGLAG---------------------------- 268 (360)
T ss_pred ccCCCcc------------------------------------ccccceeee----------------------------
Confidence 0111100 000000000
Q ss_pred CCCCCCCCCCCCCCcccCCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHH
Q 013840 329 NPSTSSSGGTGSGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 408 (435)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~ 408 (435)
..-+.....+.+|||-||..+.+|.-|+++|..||.|..|+|++|..+++.+|||||.+.+-+||..|+
T Consensus 269 -----------~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi 337 (360)
T KOG0145|consen 269 -----------VNLPGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAI 337 (360)
T ss_pred -----------eccCCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHH
Confidence 000011124689999999999999999999999999999999999989999999999999999999999
Q ss_pred HhcCCceeCCeEEEEEEccCCc
Q 013840 409 AMMNGCQLGGKKLKVQLKRDNK 430 (435)
Q Consensus 409 ~~l~g~~l~gr~i~v~~a~~~~ 430 (435)
..|||..+++|.|.|+|..+|.
T Consensus 338 ~sLNGy~lg~rvLQVsFKtnk~ 359 (360)
T KOG0145|consen 338 ASLNGYRLGDRVLQVSFKTNKA 359 (360)
T ss_pred HHhcCccccceEEEEEEecCCC
Confidence 9999999999999999987764
No 4
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=2.2e-41 Score=340.92 Aligned_cols=273 Identities=27% Similarity=0.446 Sum_probs=227.3
Q ss_pred CccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCce
Q 013840 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (435)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i 89 (435)
......+|||+|||.++|+++|+++|+.||.|.+|+++.+. +++++|||||+|.+.++|++|++.+|+..+ .+ +.+
T Consensus 84 ~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~~-~~--~~i 159 (562)
T TIGR01628 84 RRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAIQKVNGMLL-ND--KEV 159 (562)
T ss_pred cccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHHHHHhcccEe-cC--ceE
Confidence 33456789999999999999999999999999999999987 588999999999999999999999998753 33 556
Q ss_pred eeeccCchh------ccccceEEEecCCCCCCHHHHHHhhhccCCeeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHH
Q 013840 90 QVKYADGEL------ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAI 163 (435)
Q Consensus 90 ~~~~~~~~~------~~~~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~~~~~~g~afV~f~~~e~a~~a~~~l 163 (435)
.+....... ....++|||+||+.++++++|+++|+.||.|.++.+..+.++.++|+|||+|.+.++|.+|++.+
T Consensus 160 ~v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l 239 (562)
T TIGR01628 160 YVGRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEM 239 (562)
T ss_pred EEeccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHh
Confidence 554332221 22356799999999999999999999999999999999988999999999999999999999999
Q ss_pred cCCCcCC----CCcceEEEEecCCHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCCCCCCCCCCCCCccCCCCcCccc
Q 013840 164 NGKHKME----GSSVPLVVKWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQ 239 (435)
Q Consensus 164 ~~~~~~~----g~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (435)
++.. +. |.. +.+.++..+.++..............
T Consensus 240 ~g~~-i~~~~~g~~--l~v~~a~~k~er~~~~~~~~~~~~~~-------------------------------------- 278 (562)
T TIGR01628 240 NGKK-IGLAKEGKK--LYVGRAQKRAEREAELRRKFEELQQE-------------------------------------- 278 (562)
T ss_pred CCcE-eccccccee--eEeecccChhhhHHHHHhhHHhhhhh--------------------------------------
Confidence 9987 55 554 77877777665543322111111000
Q ss_pred cCCCCCCCCCCccCcCCCCCCCCCCcCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013840 240 YRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPG 319 (435)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (435)
T Consensus 279 -------------------------------------------------------------------------------- 278 (562)
T TIGR01628 279 -------------------------------------------------------------------------------- 278 (562)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccCCCCCCCCCCCCCCCCCcccCCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeC
Q 013840 320 SVSPAVANSNPSTSSSGGTGSGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYE 399 (435)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~ 399 (435)
.......++|||+||+..+|+++|+++|+.||+|.+|+|+.+ .+|+++|||||+|.
T Consensus 279 -----------------------~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~ 334 (562)
T TIGR01628 279 -----------------------RKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFS 334 (562)
T ss_pred -----------------------hhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeC
Confidence 000114578999999999999999999999999999999999 58999999999999
Q ss_pred CHHHHHHHHHhcCCceeCCeEEEEEEccCCcC
Q 013840 400 SPASAQNAIAMMNGCQLGGKKLKVQLKRDNKQ 431 (435)
Q Consensus 400 ~~~~A~~A~~~l~g~~l~gr~i~v~~a~~~~~ 431 (435)
++++|.+|+..|||..|+|++|+|.+|+.+..
T Consensus 335 ~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~ 366 (562)
T TIGR01628 335 NPEEANRAVTEMHGRMLGGKPLYVALAQRKEQ 366 (562)
T ss_pred CHHHHHHHHHHhcCCeeCCceeEEEeccCcHH
Confidence 99999999999999999999999999987653
No 5
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=1.1e-41 Score=343.00 Aligned_cols=256 Identities=28% Similarity=0.467 Sum_probs=221.3
Q ss_pred ceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCceeeecc
Q 013840 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYA 94 (435)
Q Consensus 15 ~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~~~~~ 94 (435)
.+|||+|||+++|+++|+++|+.||+|.+|++++|+.|++++|||||+|.+.++|++||+.+++..+ .| +.|++.|+
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i-~g--k~i~i~~s 77 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRL-GG--KPIRIMWS 77 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE-CC--eeEEeecc
Confidence 3799999999999999999999999999999999999999999999999999999999999988754 33 88888887
Q ss_pred Cchhc---cccceEEEecCCCCCCHHHHHHhhhccCCeeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHHcCCCcCCC
Q 013840 95 DGELE---RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEG 171 (435)
Q Consensus 95 ~~~~~---~~~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~~~~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g 171 (435)
..+.. ....+|||+|||.++++++|+++|+.||.|..|++..+.+|+++|||||+|.+.++|.+|++.++|.. +++
T Consensus 78 ~~~~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~-~~~ 156 (562)
T TIGR01628 78 QRDPSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGML-LND 156 (562)
T ss_pred cccccccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccE-ecC
Confidence 53222 22467999999999999999999999999999999999888899999999999999999999999975 677
Q ss_pred CcceEEEEecCCHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCCCCCCCCCCCCCccCCCCcCccccCCCCCCCCCCc
Q 013840 172 SSVPLVVKWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGF 251 (435)
Q Consensus 172 ~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (435)
+. +.+.......++..
T Consensus 157 ~~--i~v~~~~~~~~~~~-------------------------------------------------------------- 172 (562)
T TIGR01628 157 KE--VYVGRFIKKHEREA-------------------------------------------------------------- 172 (562)
T ss_pred ce--EEEecccccccccc--------------------------------------------------------------
Confidence 65 55543332211100
Q ss_pred cCcCCCCCCCCCCcCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCC
Q 013840 252 HGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPS 331 (435)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (435)
T Consensus 173 -------------------------------------------------------------------------------- 172 (562)
T TIGR01628 173 -------------------------------------------------------------------------------- 172 (562)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCcccCCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhc
Q 013840 332 TSSSGGTGSGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 411 (435)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l 411 (435)
......++|||+|||.++|+++|+++|+.||+|.++.|+.+. +|+++|||||+|.+.++|.+|++.|
T Consensus 173 ------------~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av~~l 239 (562)
T TIGR01628 173 ------------APLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAVEEM 239 (562)
T ss_pred ------------ccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHh
Confidence 000134689999999999999999999999999999999885 7999999999999999999999999
Q ss_pred CCceeC----CeEEEEEEccCCcC
Q 013840 412 NGCQLG----GKKLKVQLKRDNKQ 431 (435)
Q Consensus 412 ~g~~l~----gr~i~v~~a~~~~~ 431 (435)
||..+. |+.|.|.+++.+..
T Consensus 240 ~g~~i~~~~~g~~l~v~~a~~k~e 263 (562)
T TIGR01628 240 NGKKIGLAKEGKKLYVGRAQKRAE 263 (562)
T ss_pred CCcEecccccceeeEeecccChhh
Confidence 999999 99999999877654
No 6
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1e-41 Score=305.26 Aligned_cols=254 Identities=25% Similarity=0.450 Sum_probs=219.4
Q ss_pred ccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCC
Q 013840 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (435)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~ 87 (435)
.......|.|||+.||.++.|++|..+|.+.|+|-+++++.|+.++.++|||||.|.+.++|+.||+.||+..+..| +
T Consensus 77 g~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~G--K 154 (506)
T KOG0117|consen 77 GPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPG--K 154 (506)
T ss_pred CCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCC--C
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999988776 6
Q ss_pred ceeeeccCchhccccceEEEecCCCCCCHHHHHHhhhccCC-eeEEEEecCC--CCCcccEEEEEeCCHHHHHHHHHHH-
Q 013840 88 PLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGT-IKDLQILRGS--QQTSKGCAFLKYETKEQALAALEAI- 163 (435)
Q Consensus 88 ~i~~~~~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~g~-i~~v~~~~~~--~~~~~g~afV~f~~~e~a~~a~~~l- 163 (435)
.|.+..+. .+++|||+|||+++++++|++.+++.++ |+.|.++..+ .++++|||||+|.+...|..|-++|
T Consensus 155 ~igvc~Sv-----an~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~ 229 (506)
T KOG0117|consen 155 LLGVCVSV-----ANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLM 229 (506)
T ss_pred EeEEEEee-----ecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhcc
Confidence 66665443 2478999999999999999999999984 7788887665 5678999999999999998888764
Q ss_pred cCCCcCCCCcceEEEEecCCHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCCCCCCCCCCCCCccCCCCcCccccCCC
Q 013840 164 NGKHKMEGSSVPLVVKWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLP 243 (435)
Q Consensus 164 ~~~~~~~g~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (435)
+++.-++|.. +.|.||.+..+.....
T Consensus 230 ~g~~klwgn~--~tVdWAep~~e~ded~---------------------------------------------------- 255 (506)
T KOG0117|consen 230 PGKIKLWGNA--ITVDWAEPEEEPDEDT---------------------------------------------------- 255 (506)
T ss_pred CCceeecCCc--ceeeccCcccCCChhh----------------------------------------------------
Confidence 5554456665 7999998864322210
Q ss_pred CCCCCCCccCcCCCCCCCCCCcCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013840 244 PMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSP 323 (435)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (435)
T Consensus 256 -------------------------------------------------------------------------------- 255 (506)
T KOG0117|consen 256 -------------------------------------------------------------------------------- 255 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCCCCCCCCCCCcccCCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHH
Q 013840 324 AVANSNPSTSSSGGTGSGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPAS 403 (435)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~ 403 (435)
-.....|||+||+.++|+|.|+++|+.||.|.+|+.++| ||||.|.++++
T Consensus 256 ----------------------ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~d 305 (506)
T KOG0117|consen 256 ----------------------MSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAERED 305 (506)
T ss_pred ----------------------hhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHH
Confidence 003468999999999999999999999999999999866 89999999999
Q ss_pred HHHHHHhcCCceeCCeEEEEEEccCCcCC
Q 013840 404 AQNAIAMMNGCQLGGKKLKVQLKRDNKQN 432 (435)
Q Consensus 404 A~~A~~~l~g~~l~gr~i~v~~a~~~~~~ 432 (435)
|.+|++.+||+.|.|..|.|.+|+...+.
T Consensus 306 avkAm~~~ngkeldG~~iEvtLAKP~~k~ 334 (506)
T KOG0117|consen 306 AVKAMKETNGKELDGSPIEVTLAKPVDKK 334 (506)
T ss_pred HHHHHHHhcCceecCceEEEEecCChhhh
Confidence 99999999999999999999999987654
No 7
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=1.7e-40 Score=322.37 Aligned_cols=250 Identities=25% Similarity=0.448 Sum_probs=206.4
Q ss_pred CccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCce
Q 013840 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (435)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i 89 (435)
.+...++|||+|||+++++++|+++|++||+|.+++|+.| .+++++|||||+|.+.++|++||+.||+..+..+ +.+
T Consensus 54 ~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~G--r~l 130 (578)
T TIGR01648 54 QPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPG--RLL 130 (578)
T ss_pred CCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCC--ccc
Confidence 3445699999999999999999999999999999999999 5799999999999999999999999999876555 455
Q ss_pred eeeccCchhccccceEEEecCCCCCCHHHHHHhhhccCC-eeEEEEecC--CCCCcccEEEEEeCCHHHHHHHHHHHcC-
Q 013840 90 QVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGT-IKDLQILRG--SQQTSKGCAFLKYETKEQALAALEAING- 165 (435)
Q Consensus 90 ~~~~~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~g~-i~~v~~~~~--~~~~~~g~afV~f~~~e~a~~a~~~l~~- 165 (435)
.+.++. ..++|||+|||.++++++|.++|+.++. +..+.+... ..++++|||||+|++.++|.+|++.|+.
T Consensus 131 ~V~~S~-----~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~g 205 (578)
T TIGR01648 131 GVCISV-----DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPG 205 (578)
T ss_pred cccccc-----cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhcc
Confidence 554432 2578999999999999999999999874 455444332 2456789999999999999999988764
Q ss_pred CCcCCCCcceEEEEecCCHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCCCCCCCCCCCCCccCCCCcCccccCCCCC
Q 013840 166 KHKMEGSSVPLVVKWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPM 245 (435)
Q Consensus 166 ~~~~~g~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (435)
...++|+. |.|.|+.+..+....
T Consensus 206 ki~l~Gr~--I~VdwA~p~~~~d~~------------------------------------------------------- 228 (578)
T TIGR01648 206 RIQLWGHV--IAVDWAEPEEEVDED------------------------------------------------------- 228 (578)
T ss_pred ceEecCce--EEEEeeccccccccc-------------------------------------------------------
Confidence 32356664 778777654210000
Q ss_pred CCCCCccCcCCCCCCCCCCcCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 013840 246 QNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAV 325 (435)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (435)
T Consensus 229 -------------------------------------------------------------------------------- 228 (578)
T TIGR01648 229 -------------------------------------------------------------------------------- 228 (578)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCCcccCCCCceEEEeCCCCCCCHHHHHHHhhcC--CcEEEEEEEeeCCCCCcceEEEEEeCCHHH
Q 013840 326 ANSNPSTSSSGGTGSGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAF--GRVLSAKVFVDKATGVSKCFGFVSYESPAS 403 (435)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~f--G~v~~v~i~~~~~~g~~~g~afV~F~~~~~ 403 (435)
.....++|||+||+..+|+++|+++|+.| |+|.+|.++ ++||||+|.++++
T Consensus 229 -------------------~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~ 281 (578)
T TIGR01648 229 -------------------VMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDRED 281 (578)
T ss_pred -------------------ccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHH
Confidence 00134789999999999999999999999 999999875 3599999999999
Q ss_pred HHHHHHhcCCceeCCeEEEEEEccCCcC
Q 013840 404 AQNAIAMMNGCQLGGKKLKVQLKRDNKQ 431 (435)
Q Consensus 404 A~~A~~~l~g~~l~gr~i~v~~a~~~~~ 431 (435)
|.+|++.||+..|.|+.|+|+|++.+.+
T Consensus 282 A~kAi~~lnG~~i~Gr~I~V~~Akp~~~ 309 (578)
T TIGR01648 282 AVKAMDELNGKELEGSEIEVTLAKPVDK 309 (578)
T ss_pred HHHHHHHhCCCEECCEEEEEEEccCCCc
Confidence 9999999999999999999999987654
No 8
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=2.5e-39 Score=317.68 Aligned_cols=333 Identities=20% Similarity=0.253 Sum_probs=211.3
Q ss_pred CCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcC-CCcCCCCCCceee
Q 013840 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHN-KKTLPGASSPLQV 91 (435)
Q Consensus 13 ~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~-~~~~~~~~~~i~~ 91 (435)
++++|||+|||+++|+++|+++|+.||.|.++++++++ |+|||+|.+.++|++|++.++. ...+.| +.+.+
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~k------~~afVef~~~e~A~~Ai~~~~~~~~~l~g--~~l~v 72 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPGK------RQALVEFEDEESAKACVNFATSVPIYIRG--QPAFF 72 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECCC------CEEEEEeCchHHHHHHHHHhhcCCceEcC--eEEEE
Confidence 57899999999999999999999999999999998654 5999999999999999997632 223444 88888
Q ss_pred eccCchh-c------------cccceEEEecCCCCCCHHHHHHhhhccCCeeEEEEecCCCCCcccEEEEEeCCHHHHHH
Q 013840 92 KYADGEL-E------------RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALA 158 (435)
Q Consensus 92 ~~~~~~~-~------------~~~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~~~~~~g~afV~f~~~e~a~~ 158 (435)
.|+.... . ....+|+|.||++.+++++|+++|+.||.|.+|.+.++. .+++|||+|.+.++|.+
T Consensus 73 ~~s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~---~~~~afVef~~~~~A~~ 149 (481)
T TIGR01649 73 NYSTSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKN---NVFQALVEFESVNSAQH 149 (481)
T ss_pred EecCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecC---CceEEEEEECCHHHHHH
Confidence 8874322 0 012368999999999999999999999999999987653 24699999999999999
Q ss_pred HHHHHcCCCcCCCCcceEEEEecCCHHHHHHHHHHHHHhhhc-cCCCCCCCCCCcc--CCCCCCCCCCCCCCCccCCCCc
Q 013840 159 ALEAINGKHKMEGSSVPLVVKWADTEKERQARRAQKAQSQAN-NLPNADSQHPSLF--GALPMGYAPPYNGYGYQASGSY 235 (435)
Q Consensus 159 a~~~l~~~~~~~g~~~~l~v~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 235 (435)
|++.|||..+.+++ +.|.|.|+............+....+. .+++.. ...... ..........+ ++ .....++
T Consensus 150 A~~~Lng~~i~~~~-~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~-~~~~~~~~~~~~~~~~~~~-~~-~~~~~g~ 225 (481)
T TIGR01649 150 AKAALNGADIYNGC-CTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRR-DPGLDQTHRQRQPALLGQH-PS-SYGHDGY 225 (481)
T ss_pred HHHHhcCCcccCCc-eEEEEEEecCCCceeEecccCCCCCcCCCCCCCC-CCCcCccccccccccccCC-Cc-cCCCccc
Confidence 99999999855554 458888887653222111111000000 000000 000000 00000000000 00 0000000
Q ss_pred CccccCCCCCCCCCCccCcCCCCCCCCCCcCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013840 236 GLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLN 315 (435)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (435)
+... + ...+ ......+++.. ..+..
T Consensus 226 ~~~~--------------------------~---~~~~--~~~~~~~~~~~------------------------~~~~~ 250 (481)
T TIGR01649 226 SSHG--------------------------G---PLAP--LAGGDRMGPPH------------------------GPPSR 250 (481)
T ss_pred ccCC--------------------------C---CCCc--ccccccCCCcc------------------------cCCCC
Confidence 0000 0 0000 00000000000 00000
Q ss_pred CCCCCCCCccCCCCCCCCCCCCCCCCCcccCCCCceEEEeCCCC-CCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEE
Q 013840 316 NSPGSVSPAVANSNPSTSSSGGTGSGGQIEGPPGANLFIYHIPQ-EFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFG 394 (435)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~nLp~-~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~a 394 (435)
..+. ........... .......+++++|||+|||. .+|+++|+++|+.||.|.+|+|++++ +|+|
T Consensus 251 ~~~~-----~~~~~~~~~~~----~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~a 316 (481)
T TIGR01649 251 YRPA-----YEAAPLAPAIS----SYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETA 316 (481)
T ss_pred Cccc-----ccccccCcccc----ccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEE
Confidence 0000 00000000000 00011234678999999997 69999999999999999999999873 6899
Q ss_pred EEEeCCHHHHHHHHHhcCCceeCCeEEEEEEccCC
Q 013840 395 FVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRDN 429 (435)
Q Consensus 395 fV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a~~~ 429 (435)
||+|.+.++|..|+..|||..|.|++|+|++++.+
T Consensus 317 fV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~ 351 (481)
T TIGR01649 317 LIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQ 351 (481)
T ss_pred EEEECCHHHHHHHHHHhCCCEECCceEEEEEcccc
Confidence 99999999999999999999999999999998664
No 9
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=7.1e-38 Score=304.27 Aligned_cols=166 Identities=20% Similarity=0.359 Sum_probs=144.8
Q ss_pred cCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCceee
Q 013840 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 91 (435)
Q Consensus 12 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~~ 91 (435)
...++|||+|||+++++++|+++|..||+|.+|+++.|+.+++++|||||+|.+.++|++|++.|||.. +.| +.|++
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~-i~G--R~IkV 181 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQM-LGG--RNIKV 181 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeE-Eec--ceeee
Confidence 456899999999999999999999999999999999999999999999999999999999999999975 444 66766
Q ss_pred eccCchh------------ccccceEEEecCCCCCCHHHHHHhhhccCCeeEEEEecCC-CCCcccEEEEEeCCHHHHHH
Q 013840 92 KYADGEL------------ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALA 158 (435)
Q Consensus 92 ~~~~~~~------------~~~~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~-~~~~~g~afV~f~~~e~a~~ 158 (435)
.+..... ....++|||+||+.++++++|+++|+.||.|.++++.++. +++++|||||+|.+.++|.+
T Consensus 182 ~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~k 261 (612)
T TIGR01645 182 GRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSE 261 (612)
T ss_pred cccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHH
Confidence 5543211 1124689999999999999999999999999999999886 56789999999999999999
Q ss_pred HHHHHcCCCcCCCCcceEEEEecCC
Q 013840 159 ALEAINGKHKMEGSSVPLVVKWADT 183 (435)
Q Consensus 159 a~~~l~~~~~~~g~~~~l~v~~a~~ 183 (435)
|++.||+.. ++|+. |.|.++..
T Consensus 262 AI~amNg~e-lgGr~--LrV~kAi~ 283 (612)
T TIGR01645 262 AIASMNLFD-LGGQY--LRVGKCVT 283 (612)
T ss_pred HHHHhCCCe-eCCeE--EEEEecCC
Confidence 999999976 78876 67777664
No 10
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=8.9e-38 Score=286.23 Aligned_cols=341 Identities=23% Similarity=0.368 Sum_probs=229.6
Q ss_pred CceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCceeeec
Q 013840 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKY 93 (435)
Q Consensus 14 ~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~~~~ 93 (435)
..||||++||++++.++|.++|+.+|+|..+.++.++.++..+||+||.|.-.||+++|+..+++.. +.| +.+.+..
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~k-f~G--r~l~v~~ 81 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSK-FEG--RILNVDP 81 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCc-ccc--eeccccc
Confidence 3799999999999999999999999999999999999999999999999999999999999998875 444 4444444
Q ss_pred cCchhccc---------------------------cceEEEecCCCCCCHHHHHHhhhccCCeeEEEEecCCCCCcccEE
Q 013840 94 ADGELERL---------------------------EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCA 146 (435)
Q Consensus 94 ~~~~~~~~---------------------------~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~~~~~~g~a 146 (435)
+..+.... ...|+|+|||+.+...+|+.+|+.||.|.+|.|++...|+-.|||
T Consensus 82 A~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFa 161 (678)
T KOG0127|consen 82 AKKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFA 161 (678)
T ss_pred ccccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceE
Confidence 32211110 357999999999999999999999999999999988888777999
Q ss_pred EEEeCCHHHHHHHHHHHcCCCcCCCCcceEEEEecCCHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCCCCCCCCCCC
Q 013840 147 FLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNG 226 (435)
Q Consensus 147 fV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (435)
||+|....+|.+|++.+|+.. |+|+. |-|.||.++...........+......+-..
T Consensus 162 FV~fk~~~dA~~Al~~~N~~~-i~gR~--VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEe-------------------- 218 (678)
T KOG0127|consen 162 FVQFKEKKDAEKALEFFNGNK-IDGRP--VAVDWAVDKDTYEDTAHEEKQSLKKAVKEEE-------------------- 218 (678)
T ss_pred EEEEeeHHHHHHHHHhccCce-ecCce--eEEeeecccccccccchhhhhhhhhccchhh--------------------
Confidence 999999999999999999976 88886 7888887765443322111110000000000
Q ss_pred CCccCCCCcCccccCCCCCCCCCCccCcCCCCCCCCCCcCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013840 227 YGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPG 306 (435)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (435)
.+..+.........-.. ..-+.+.-... + +.-..
T Consensus 219 --------------------------d~e~~~d~~~~~~~Ed~-e~d~edeEe~D-------~------~se~~------ 252 (678)
T KOG0127|consen 219 --------------------------DKEADEDDGKDFDEEDG-EEDSEDEEETD-------G------NSEAF------ 252 (678)
T ss_pred --------------------------hcccccccccccchhcc-ccccccccccc-------c------cchhh------
Confidence 00000000000000000 00000000000 0 00000
Q ss_pred CCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCC--CcccCCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEee
Q 013840 307 GMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSG--GQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVD 384 (435)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~ 384 (435)
-.+.... ......+... .+........+.. ...+...+.+|||+|||+++|+++|.++|++||+|.++.|..+
T Consensus 253 -ee~~~~E-ee~~~vDd~e---~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~ 327 (678)
T KOG0127|consen 253 -EEGEESE-EEEDDVDDEE---SSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKD 327 (678)
T ss_pred -hcccccc-cccccccccc---ccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEec
Confidence 0000000 0000000000 0000000011111 1223345699999999999999999999999999999999999
Q ss_pred CCCCCcceEEEEEeCCHHHHHHHHHhc-----CC-ceeCCeEEEEEEccCCcC
Q 013840 385 KATGVSKCFGFVSYESPASAQNAIAMM-----NG-CQLGGKKLKVQLKRDNKQ 431 (435)
Q Consensus 385 ~~~g~~~g~afV~F~~~~~A~~A~~~l-----~g-~~l~gr~i~v~~a~~~~~ 431 (435)
+.+|+++|.|||.|.+..+|+.||+.- .| ..|.||.|.|.+|-.++.
T Consensus 328 k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~Rke 380 (678)
T KOG0127|consen 328 KDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTRKE 380 (678)
T ss_pred cCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccchHH
Confidence 999999999999999999999999876 24 789999999999876653
No 11
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=6.6e-37 Score=301.75 Aligned_cols=167 Identities=29% Similarity=0.466 Sum_probs=143.4
Q ss_pred CccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCce
Q 013840 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (435)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i 89 (435)
.+.+.++|||+|||+.+++++|+++|+.||.|..|+++.|+.+++++|||||+|.+.++|.+||. |++..+ .| +.|
T Consensus 85 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~-~g--~~i 160 (457)
T TIGR01622 85 AERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQML-LG--RPI 160 (457)
T ss_pred cccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEE-CC--eee
Confidence 34567899999999999999999999999999999999999999999999999999999999996 777654 33 666
Q ss_pred eeeccCchhc-------------cccceEEEecCCCCCCHHHHHHhhhccCCeeEEEEecCC-CCCcccEEEEEeCCHHH
Q 013840 90 QVKYADGELE-------------RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQ 155 (435)
Q Consensus 90 ~~~~~~~~~~-------------~~~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~-~~~~~g~afV~f~~~e~ 155 (435)
.+.++..+.. ...++|||+|||..+++++|+++|+.||.|..|.+..+. +|.++|||||+|.+.++
T Consensus 161 ~v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~ 240 (457)
T TIGR01622 161 IVQSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEE 240 (457)
T ss_pred EEeecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHH
Confidence 6655432211 114789999999999999999999999999999998876 56889999999999999
Q ss_pred HHHHHHHHcCCCcCCCCcceEEEEecCC
Q 013840 156 ALAALEAINGKHKMEGSSVPLVVKWADT 183 (435)
Q Consensus 156 a~~a~~~l~~~~~~~g~~~~l~v~~a~~ 183 (435)
|.+|++.|+|.. +.|+. |.|.|+..
T Consensus 241 A~~A~~~l~g~~-i~g~~--i~v~~a~~ 265 (457)
T TIGR01622 241 AKEALEVMNGFE-LAGRP--IKVGYAQD 265 (457)
T ss_pred HHHHHHhcCCcE-ECCEE--EEEEEccC
Confidence 999999999965 67765 78888763
No 12
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=1.3e-35 Score=291.32 Aligned_cols=279 Identities=22% Similarity=0.316 Sum_probs=203.5
Q ss_pred ceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCceeeecc
Q 013840 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYA 94 (435)
Q Consensus 15 ~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~~~~~ 94 (435)
.+|||+||++++|+++|+++|+.||.|..|++++++. +|+|||+|.+.++|.+|++.|||..+..+. ..+++.|+
T Consensus 97 ~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~----~~~afVef~~~~~A~~A~~~Lng~~i~~~~-~~l~v~~s 171 (481)
T TIGR01649 97 LRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN----VFQALVEFESVNSAQHAKAALNGADIYNGC-CTLKIEYA 171 (481)
T ss_pred EEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC----ceEEEEEECCHHHHHHHHHHhcCCcccCCc-eEEEEEEe
Confidence 4799999999999999999999999999999887653 369999999999999999999998765432 23333322
Q ss_pred Cc----------hh------------------------------------------------------------------
Q 013840 95 DG----------EL------------------------------------------------------------------ 98 (435)
Q Consensus 95 ~~----------~~------------------------------------------------------------------ 98 (435)
.. +.
T Consensus 172 k~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (481)
T TIGR01649 172 KPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRY 251 (481)
T ss_pred cCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCC
Confidence 11 00
Q ss_pred --------------------ccccceEEEecCCC-CCCHHHHHHhhhccCCeeEEEEecCCCCCcccEEEEEeCCHHHHH
Q 013840 99 --------------------ERLEHKLFIGMLPK-NVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQAL 157 (435)
Q Consensus 99 --------------------~~~~~~l~v~~lp~-~~t~~~l~~~f~~~g~i~~v~~~~~~~~~~~g~afV~f~~~e~a~ 157 (435)
.....+|+|+||+. .+++++|+++|+.||.|.+|+++.++ +|+|||+|.+.++|.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~----~g~afV~f~~~~~A~ 327 (481)
T TIGR01649 252 RPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK----KETALIEMADPYQAQ 327 (481)
T ss_pred cccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC----CCEEEEEECCHHHHH
Confidence 01235899999997 69999999999999999999998763 689999999999999
Q ss_pred HHHHHHcCCCcCCCCcceEEEEecCCHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCCCCCCCCCCCCCccCCCCcCc
Q 013840 158 AALEAINGKHKMEGSSVPLVVKWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGL 237 (435)
Q Consensus 158 ~a~~~l~~~~~~~g~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (435)
.|++.|||.. +.|+. |.|.++..+.....+ . +....+ ...+..+.
T Consensus 328 ~Ai~~lng~~-l~g~~--l~v~~s~~~~~~~~~--------------~--------~~~~~~-~~~~~d~~--------- 372 (481)
T TIGR01649 328 LALTHLNGVK-LFGKP--LRVCPSKQQNVQPPR--------------E--------GQLDDG-LTSYKDYS--------- 372 (481)
T ss_pred HHHHHhCCCE-ECCce--EEEEEcccccccCCC--------------C--------CcCcCC-Cccccccc---------
Confidence 9999999976 67775 677665443110000 0 000000 00000000
Q ss_pred cccCCCCCCCCCCccCcCCCCCCCCCCcCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013840 238 MQYRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNS 317 (435)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (435)
....
T Consensus 373 ---------------------------------------------------~~~~------------------------- 376 (481)
T TIGR01649 373 ---------------------------------------------------SSRN------------------------- 376 (481)
T ss_pred ---------------------------------------------------CCcc-------------------------
Confidence 0000
Q ss_pred CCCCCCccCCCCCCCCCCCCCCCCCcccCCCCceEEEeCCCCCCCHHHHHHHhhcCCc--EEEEEEEeeCCCCCcceEEE
Q 013840 318 PGSVSPAVANSNPSTSSSGGTGSGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGR--VLSAKVFVDKATGVSKCFGF 395 (435)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~--v~~v~i~~~~~~g~~~g~af 395 (435)
..... ..........+++.+|||+|||.++|+++|+++|+.||. |.++++.... +..+|+||
T Consensus 377 -~r~~~-------------~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~--~~~~~~gf 440 (481)
T TIGR01649 377 -HRFKK-------------PGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKD--NERSKMGL 440 (481)
T ss_pred -ccCCC-------------cccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCC--CCcceeEE
Confidence 00000 000000001236689999999999999999999999998 8888887653 33689999
Q ss_pred EEeCCHHHHHHHHHhcCCceeCCeE------EEEEEccCC
Q 013840 396 VSYESPASAQNAIAMMNGCQLGGKK------LKVQLKRDN 429 (435)
Q Consensus 396 V~F~~~~~A~~A~~~l~g~~l~gr~------i~v~~a~~~ 429 (435)
|+|.+.++|..|+..|||..|.|+. |+|+|++++
T Consensus 441 VeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 441 LEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred EEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 9999999999999999999999985 999999875
No 13
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=9.7e-35 Score=290.38 Aligned_cols=275 Identities=21% Similarity=0.346 Sum_probs=198.6
Q ss_pred cCccCCceEEEecCCCCCCHHHHHHHHhcc------------CceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHh
Q 013840 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEF------------ALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76 (435)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~------------g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l 76 (435)
......++|||+|||+.+|+++|+++|..+ +.|..+.+ .+.+|||||+|.+.++|..|| .|
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al-~l 242 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAM-AL 242 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhh-cC
Confidence 445667899999999999999999999975 23443333 446789999999999999999 58
Q ss_pred cCCCcCCCCCCceeeeccCch------------------------------hccccceEEEecCCCCCCHHHHHHhhhcc
Q 013840 77 HNKKTLPGASSPLQVKYADGE------------------------------LERLEHKLFIGMLPKNVSEAEVSALFSIY 126 (435)
Q Consensus 77 ~~~~~~~~~~~~i~~~~~~~~------------------------------~~~~~~~l~v~~lp~~~t~~~l~~~f~~~ 126 (435)
++.. +.| +.|++...... .....++|||+|||..+++++|+++|+.|
T Consensus 243 ~g~~-~~g--~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~ 319 (509)
T TIGR01642 243 DSII-YSN--VFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESF 319 (509)
T ss_pred CCeE-eeC--ceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 8864 444 55555422110 01124689999999999999999999999
Q ss_pred CCeeEEEEecCC-CCCcccEEEEEeCCHHHHHHHHHHHcCCCcCCCCcceEEEEecCCHHHHHHHHHHHHHhhhccCCCC
Q 013840 127 GTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQARRAQKAQSQANNLPNA 205 (435)
Q Consensus 127 g~i~~v~~~~~~-~~~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~ 205 (435)
|.|..+.++.+. +|.++|||||+|.+.++|..|++.|+|.. +.|+. |.|.++........ ...
T Consensus 320 G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~-~~~~~--l~v~~a~~~~~~~~------------~~~- 383 (509)
T TIGR01642 320 GDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKD-TGDNK--LHVQRACVGANQAT------------IDT- 383 (509)
T ss_pred CCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCE-ECCeE--EEEEECccCCCCCC------------ccc-
Confidence 999999998875 78899999999999999999999999987 66665 67777653210000 000
Q ss_pred CCCCCCccCCCCCCCCCCCCCCCccCCCCcCccccCCCCCCCCCCccCcCCCCCCCCCCcCCCCCCCCCCCCCccCCCCC
Q 013840 206 DSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPS 285 (435)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (435)
. . +..+ ....+.
T Consensus 384 ----~--~-----~~~~---------------------------------------------------------~~~~~~ 395 (509)
T TIGR01642 384 ----S--N-----GMAP---------------------------------------------------------VTLLAK 395 (509)
T ss_pred ----c--c-----cccc---------------------------------------------------------cccccc
Confidence 0 0 0000 000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCcccCCCCceEEEeCCCCC--C--
Q 013840 286 GFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSGGQIEGPPGANLFIYHIPQE--F-- 361 (435)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~nLp~~--~-- 361 (435)
. ..+ ........+..+|+|.||... +
T Consensus 396 ~----------------------------------~~~----------------~~~~~~~~~s~v~~l~N~~~~~~l~~ 425 (509)
T TIGR01642 396 A----------------------------------LSQ----------------SILQIGGKPTKVVQLTNLVTGDDLMD 425 (509)
T ss_pred c----------------------------------chh----------------hhccccCCCceEEEeccCCchhHhcC
Confidence 0 000 000001124578999999632 1
Q ss_pred ------CHHHHHHHhhcCCcEEEEEEEeeC---CCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 013840 362 ------GDQELGNAFQAFGRVLSAKVFVDK---ATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 427 (435)
Q Consensus 362 ------t~~~L~~~F~~fG~v~~v~i~~~~---~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a~ 427 (435)
..++|+++|++||.|.+|.|+++. ..+...|+|||+|.+.++|.+|++.|||.+|+|+.|.|.|..
T Consensus 426 d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~ 500 (509)
T TIGR01642 426 DEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYG 500 (509)
T ss_pred cchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeC
Confidence 236899999999999999998652 235667999999999999999999999999999999999864
No 14
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.7e-35 Score=246.84 Aligned_cols=239 Identities=23% Similarity=0.498 Sum_probs=185.6
Q ss_pred ccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCcee
Q 013840 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (435)
Q Consensus 11 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~ 90 (435)
+.+-+||||+||.+++||+-|..||+..|+|++++|+.|.. + . ......+...
T Consensus 3 ~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~e~-~---------------------v--~wa~~p~nQs--- 55 (321)
T KOG0148|consen 3 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDEL-K---------------------V--NWATAPGNQS--- 55 (321)
T ss_pred CCCCceEEeeccChhhHHHHHHHHHHhccccccceeehhhh-c---------------------c--ccccCcccCC---
Confidence 34567999999999999999999999999999999887621 0 0 0000001000
Q ss_pred eeccCchhccccceEEEecCCCCCCHHHHHHhhhccCCeeEEEEecCC-CCCcccEEEEEeCCHHHHHHHHHHHcCCCcC
Q 013840 91 VKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKM 169 (435)
Q Consensus 91 ~~~~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~-~~~~~g~afV~f~~~e~a~~a~~~l~~~~~~ 169 (435)
++. ...-.-++|+.|...++-++|++.|..||+|.++++++|. +++++||+||.|-+.++|+.||..|||.. +
T Consensus 56 ----k~t-~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqW-l 129 (321)
T KOG0148|consen 56 ----KPT-SNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQW-L 129 (321)
T ss_pred ----CCc-cccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCee-e
Confidence 000 0002348999999999999999999999999999999986 88999999999999999999999999975 5
Q ss_pred CCCcceEEEEecCCHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCCCCCCCCCCCCCccCCCCcCccccCCCCCCCCC
Q 013840 170 EGSSVPLVVKWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQP 249 (435)
Q Consensus 170 ~g~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (435)
.++. |+-.|+..+....... ...
T Consensus 130 G~R~--IRTNWATRKp~e~n~~----------------------------------~lt--------------------- 152 (321)
T KOG0148|consen 130 GRRT--IRTNWATRKPSEMNGK----------------------------------PLT--------------------- 152 (321)
T ss_pred ccce--eeccccccCccccCCC----------------------------------Ccc---------------------
Confidence 5554 7777776642000000 000
Q ss_pred CccCcCCCCCCCCCCcCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCC
Q 013840 250 GFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSN 329 (435)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (435)
|..+ +.
T Consensus 153 -fdeV-------------------------------------------------~N------------------------ 158 (321)
T KOG0148|consen 153 -FDEV-------------------------------------------------YN------------------------ 158 (321)
T ss_pred -HHHH-------------------------------------------------hc------------------------
Confidence 0000 00
Q ss_pred CCCCCCCCCCCCCcccCCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHH
Q 013840 330 PSTSSSGGTGSGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIA 409 (435)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 409 (435)
...+++|+|||+|++..+|+++|++.|+.||.|..|+|.++ +||+||.|.+.|.|..|+.
T Consensus 159 --------------Qssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahAIv 218 (321)
T KOG0148|consen 159 --------------QSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHAIV 218 (321)
T ss_pred --------------cCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHHHH
Confidence 01237799999999999999999999999999999999988 4899999999999999999
Q ss_pred hcCCceeCCeEEEEEEccCCcCCC
Q 013840 410 MMNGCQLGGKKLKVQLKRDNKQNK 433 (435)
Q Consensus 410 ~l~g~~l~gr~i~v~~a~~~~~~~ 433 (435)
.||+..++|..|+|.|.|......
T Consensus 219 ~mNntei~G~~VkCsWGKe~~~~~ 242 (321)
T KOG0148|consen 219 QMNNTEIGGQLVRCSWGKEGDDGI 242 (321)
T ss_pred HhcCceeCceEEEEeccccCCCCC
Confidence 999999999999999999877654
No 15
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.4e-34 Score=242.61 Aligned_cols=333 Identities=41% Similarity=0.642 Sum_probs=209.5
Q ss_pred CCceeeeccCchhcc-ccceEEEecCCCCCCHHHHHHhhhccCCeeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHHc
Q 013840 86 SSPLQVKYADGELER-LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAIN 164 (435)
Q Consensus 86 ~~~i~~~~~~~~~~~-~~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~~~~~~g~afV~f~~~e~a~~a~~~l~ 164 (435)
.|+|.++.++.+... .+++|||+.|.+.-.|||++.+|..||.|++|.+.+..+|.++|+|||+|.+.-+|..||..||
T Consensus 2 nrpiqvkpadsesrg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLH 81 (371)
T KOG0146|consen 2 NRPIQVKPADSESRGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALH 81 (371)
T ss_pred CCCccccccccccCCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhc
Confidence 377888887766555 5789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCCCCcceEEEEecCCHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCCCCCCCCCCCCCc---c--------CCC
Q 013840 165 GKHKMEGSSVPLVVKWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGY---Q--------ASG 233 (435)
Q Consensus 165 ~~~~~~g~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--------~~~ 233 (435)
|..-+.|-...|.|+++..+++|..+++++...+...+..... .+ ..+..|.. + ..+
T Consensus 82 gSqTmpGASSSLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l----~~--------g~~~ay~qalmQqQa~~~at~~~ 149 (371)
T KOG0146|consen 82 GSQTMPGASSSLVVKFADTDKERTLRRMQQMAGQLGMFNPLAL----PF--------GAYGAYAQALMQQQAALLATVAG 149 (371)
T ss_pred ccccCCCCccceEEEeccchHHHHHHHHHHHHHHhcccCcccc----cc--------chhHHHHHHHHHHHHHHHHhhcc
Confidence 9998888878899999999999999999998887654432110 00 00101100 0 000
Q ss_pred CcCccccCCCC--CCCCCCcc--C-cCCCCCCCCCCcCCCCCCCCCCCCCccCCC--CCCCCC-CCCCCCCC-CCC-CCC
Q 013840 234 SYGLMQYRLPP--MQNQPGFH--G-IIPPVNQGNAMRGASPDLSSNMGPRNYAMP--PSGFVG-SGYPAVPG-LQY-PMP 303 (435)
Q Consensus 234 ~~~~~~~~~~~--~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~-~~~-~~~ 303 (435)
.+-......+. ++..+++. + ...+....+ ....++.........- +-+..+ .+....++ .+. ...
T Consensus 150 ~~L~p~~~~~~~~mQ~~aA~~angl~A~Pv~p~s-----~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~v 224 (371)
T KOG0146|consen 150 PYLSPMAAFAAAQMQQMAALNANGLAAAPVTPAS-----GGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAV 224 (371)
T ss_pred cccChhhhhHHHHHHHHHHHhhcccccCCcCccc-----cCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHH
Confidence 11000000000 00001110 0 001100000 0000000000000000 000000 00100000 000 000
Q ss_pred CCCCCCCCCCCCCCCC-----------CC----CCccCCCCCCCCCCCCCCCCCcccCCCCceEEEeCCCCCCCHHHHHH
Q 013840 304 YPGGMLGHRPLNNSPG-----------SV----SPAVANSNPSTSSSGGTGSGGQIEGPPGANLFIYHIPQEFGDQELGN 368 (435)
Q Consensus 304 ~~~~~~~~~~~~~~~~-----------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~nLp~~~t~~~L~~ 368 (435)
|+++...+..-.+.-. .. ..........-..+...-..-..+++++|+|||-.||.+..+.+|..
T Consensus 225 y~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQ 304 (371)
T KOG0146|consen 225 YANGLHPYPAQSPTVADPLQQAYAGVQQYAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQ 304 (371)
T ss_pred hhcCCccCCCCCccccchhhhhhhhHHHHhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHH
Confidence 1111111100000000 00 00000000011111111122345778999999999999999999999
Q ss_pred HhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEccCCcCCCCC
Q 013840 369 AFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRDNKQNKPY 435 (435)
Q Consensus 369 ~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a~~~~~~~~~ 435 (435)
.|-.||.|++.++..|+.++.+++||||.|.|+..|+.|+.+|||+.|+=++|+|++.|.|++.+||
T Consensus 305 mF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkdanRPY 371 (371)
T KOG0146|consen 305 MFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRPY 371 (371)
T ss_pred HhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCccccCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999
No 16
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-32 Score=256.04 Aligned_cols=246 Identities=28% Similarity=0.484 Sum_probs=216.0
Q ss_pred ceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCceeeecc
Q 013840 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYA 94 (435)
Q Consensus 15 ~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~~~~~ 94 (435)
..|||+ +++|+..|+++|+.+|++.++++.+|. | +.|||||.|.++++|.+||+.+|... + .++++++.|+
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~-~--~~~~~rim~s 72 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDV-L--KGKPIRIMWS 72 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcc-c--CCcEEEeehh
Confidence 468998 999999999999999999999999998 6 99999999999999999999998764 4 4499999988
Q ss_pred CchhccccceEEEecCCCCCCHHHHHHhhhccCCeeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHHcCCCcCCCCcc
Q 013840 95 DGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 174 (435)
Q Consensus 95 ~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~~~~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~ 174 (435)
...... |+|.||+++++..+|+++|+.||.|++|++..+..| ++|+ ||+|++++.|.+|++.+||.. +.+.+
T Consensus 73 ~rd~~~----~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~l-l~~kk- 144 (369)
T KOG0123|consen 73 QRDPSL----VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGML-LNGKK- 144 (369)
T ss_pred ccCCce----eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcc-cCCCe-
Confidence 655443 999999999999999999999999999999999988 8899 999999999999999999965 66665
Q ss_pred eEEEEecCCHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCCCCCCCCCCCCCccCCCCcCccccCCCCCCCCCCccCc
Q 013840 175 PLVVKWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGI 254 (435)
Q Consensus 175 ~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (435)
+.+.....+.++..+...
T Consensus 145 -i~vg~~~~~~er~~~~~~------------------------------------------------------------- 162 (369)
T KOG0123|consen 145 -IYVGLFERKEEREAPLGE------------------------------------------------------------- 162 (369)
T ss_pred -eEEeeccchhhhcccccc-------------------------------------------------------------
Confidence 677777766655443110
Q ss_pred CCCCCCCCCCcCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCC
Q 013840 255 IPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSS 334 (435)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (435)
T Consensus 163 -------------------------------------------------------------------------------- 162 (369)
T KOG0123|consen 163 -------------------------------------------------------------------------------- 162 (369)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCcccCCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCc
Q 013840 335 SGGTGSGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGC 414 (435)
Q Consensus 335 ~~~~~~~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~ 414 (435)
....-++++|+|++..+++++|.++|+.||.|.++.++.+. .|+++||+||.|.+.++|..|++.||+.
T Consensus 163 ----------~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~-~g~~~~~gfv~f~~~e~a~~av~~l~~~ 231 (369)
T KOG0123|consen 163 ----------YKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDS-IGKSKGFGFVNFENPEDAKKAVETLNGK 231 (369)
T ss_pred ----------hhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecC-CCCCCCccceeecChhHHHHHHHhccCC
Confidence 00123689999999999999999999999999999999985 7889999999999999999999999999
Q ss_pred eeCCeEEEEEEccCCc
Q 013840 415 QLGGKKLKVQLKRDNK 430 (435)
Q Consensus 415 ~l~gr~i~v~~a~~~~ 430 (435)
.+++..+.|..+..+.
T Consensus 232 ~~~~~~~~V~~aqkk~ 247 (369)
T KOG0123|consen 232 IFGDKELYVGRAQKKS 247 (369)
T ss_pred cCCccceeecccccch
Confidence 9999999998877643
No 17
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.5e-32 Score=252.59 Aligned_cols=265 Identities=31% Similarity=0.517 Sum_probs=217.2
Q ss_pred eEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCceeeeccC
Q 013840 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYAD 95 (435)
Q Consensus 16 ~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~~~~~~ 95 (435)
.|||.||++++|..+|.++|+.||+|.+|++..+.. + ++|| ||+|++.++|++|++++||.. +.+ ..|.+....
T Consensus 78 ~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~l-l~~--kki~vg~~~ 151 (369)
T KOG0123|consen 78 LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGML-LNG--KKIYVGLFE 151 (369)
T ss_pred eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcc-cCC--CeeEEeecc
Confidence 399999999999999999999999999999999984 4 9999 999999999999999999974 444 555554333
Q ss_pred chhc---------cccceEEEecCCCCCCHHHHHHhhhccCCeeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHHcCC
Q 013840 96 GELE---------RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 166 (435)
Q Consensus 96 ~~~~---------~~~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~~~~~~g~afV~f~~~e~a~~a~~~l~~~ 166 (435)
.+.+ .....+++.+++.+.+.+.|.++|..+|+|..+.++.+..+.+++++||.|++.++|..|++.|++.
T Consensus 152 ~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~ 231 (369)
T KOG0123|consen 152 RKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGK 231 (369)
T ss_pred chhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCC
Confidence 3222 2246789999999999999999999999999999999998989999999999999999999999997
Q ss_pred CcCCCCcceEEEEecCCHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCCCCCCCCCCCCCccCCCCcCccccCCCCCC
Q 013840 167 HKMEGSSVPLVVKWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQ 246 (435)
Q Consensus 167 ~~~~g~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (435)
. +.+.. +.|..+..+.++.....++.......
T Consensus 232 ~-~~~~~--~~V~~aqkk~e~~~~l~~~~~~~~~~--------------------------------------------- 263 (369)
T KOG0123|consen 232 I-FGDKE--LYVGRAQKKSEREAELKRKFEQEFAK--------------------------------------------- 263 (369)
T ss_pred c-CCccc--eeecccccchhhHHHHhhhhHhhhhh---------------------------------------------
Confidence 6 55554 56655555333332221111111000
Q ss_pred CCCCccCcCCCCCCCCCCcCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccC
Q 013840 247 NQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVA 326 (435)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (435)
T Consensus 264 -------------------------------------------------------------------------------- 263 (369)
T KOG0123|consen 264 -------------------------------------------------------------------------------- 263 (369)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCcccCCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHH
Q 013840 327 NSNPSTSSSGGTGSGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQN 406 (435)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~ 406 (435)
........+|||+||+..++.+.|++.|+.||+|.+++|+.+. .|+++|||||.|.+.++|..
T Consensus 264 ----------------~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~-~g~skG~gfV~fs~~eeA~~ 326 (369)
T KOG0123|consen 264 ----------------RSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDE-NGKSKGFGFVEFSSPEEAKK 326 (369)
T ss_pred ----------------ccccccccccccccCccccchhHHHHHHhcccceeeEEEEecc-CCCccceEEEEcCCHHHHHH
Confidence 0011245789999999999999999999999999999999984 89999999999999999999
Q ss_pred HHHhcCCceeCCeEEEEEEccCCcC
Q 013840 407 AIAMMNGCQLGGKKLKVQLKRDNKQ 431 (435)
Q Consensus 407 A~~~l~g~~l~gr~i~v~~a~~~~~ 431 (435)
|+..+|+..++++.|.|.++..+..
T Consensus 327 A~~~~n~~~i~~k~l~vav~qr~~~ 351 (369)
T KOG0123|consen 327 AMTEMNGRLIGGKPLYVAVAQRKED 351 (369)
T ss_pred HHHhhChhhhcCCchhhhHHhhhcc
Confidence 9999999999999999999885543
No 18
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=4.7e-32 Score=237.03 Aligned_cols=383 Identities=18% Similarity=0.283 Sum_probs=224.9
Q ss_pred CceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCceeeec
Q 013840 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKY 93 (435)
Q Consensus 14 ~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~~~~ 93 (435)
-|.|||+.|.+...|+.|+..|..||+|++|.+-||+.|++++|||||+|+-+|.|+.|++.||+. +++| +.|++..
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~-mlGG--RNiKVgr 189 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQ-MLGG--RNIKVGR 189 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccc-cccC--ccccccC
Confidence 378999999999999999999999999999999999999999999999999999999999999997 5666 7777664
Q ss_pred cCchhc------------cccceEEEecCCCCCCHHHHHHhhhccCCeeEEEEecCCCC-CcccEEEEEeCCHHHHHHHH
Q 013840 94 ADGELE------------RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQ-TSKGCAFLKYETKEQALAAL 160 (435)
Q Consensus 94 ~~~~~~------------~~~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~~~-~~~g~afV~f~~~e~a~~a~ 160 (435)
...-.. +.-.+|||..+.++.+++||+..|+.||+|..|.+-+.+++ ..+||+|++|.+..+..+|+
T Consensus 190 PsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAi 269 (544)
T KOG0124|consen 190 PSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAI 269 (544)
T ss_pred CCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHh
Confidence 432111 12468999999999999999999999999999999998865 46899999999999999999
Q ss_pred HHHcCCCcCCCCcceEEEEecCCHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCCCCCCCCCCC-----------CCc
Q 013840 161 EAINGKHKMEGSSVPLVVKWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNG-----------YGY 229 (435)
Q Consensus 161 ~~l~~~~~~~g~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~ 229 (435)
..||--. ++|+. |+|..+.....- ..++...+.+++...-.... .+.
T Consensus 270 asMNlFD-LGGQy--LRVGk~vTPP~a-------------------Ll~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~ 327 (544)
T KOG0124|consen 270 ASMNLFD-LGGQY--LRVGKCVTPPDA-------------------LLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGS 327 (544)
T ss_pred hhcchhh-cccce--EecccccCCCch-------------------hcCCCCcccCchHHHHHHHHHHHHHHHHHHhccC
Confidence 9988643 55553 666554332110 00011111110000000000 000
Q ss_pred cCCCCcCccccCCCCCCCCCCccCcCCCCCCCCCCcCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013840 230 QASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGML 309 (435)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (435)
..-+..|.+....+....... ....+.....-..++.-..+++..++.+..++|.+....-++..+.+......-..
T Consensus 328 avlg~~G~~~~vSpA~~aa~p-~~~l~qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeK-- 404 (544)
T KOG0124|consen 328 AVLGTVGAPGLVSPAPRAAQP-LGTLPQAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEK-- 404 (544)
T ss_pred CcccccCCccccCccccccCC-CCCccccchhccCCceeccCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhh--
Confidence 000000000000000000000 00000000000111111222333333444444444433222111111111000000
Q ss_pred CCCCCCCC--CCCCCCccCCCCCCCCCCCCCCCCCcccCCCCceEEEeCC--CCCCC---HHHHHHHhhcCCcEEEEEEE
Q 013840 310 GHRPLNNS--PGSVSPAVANSNPSTSSSGGTGSGGQIEGPPGANLFIYHI--PQEFG---DQELGNAFQAFGRVLSAKVF 382 (435)
Q Consensus 310 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~nL--p~~~t---~~~L~~~F~~fG~v~~v~i~ 382 (435)
....+.+. ....-+..+..+...+++..-.+..-.....++++.++|+ |.+++ ++++.+.|++||.|.+|.|.
T Consensus 405 e~eelqpkl~~~~~L~~QE~msI~G~sARhlvMqkLmR~~~S~VivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~ 484 (544)
T KOG0124|consen 405 EEEELQPKLERPEMLSEQEHMSISGSSARHLVMQKLMRKQESTVIVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIY 484 (544)
T ss_pred hHhhhcccccCHHHhhhhhCccccCccHHHHHHHHHhccccCcEEEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEE
Confidence 00000000 0000000011111111222222222335567789999999 66665 46899999999999999998
Q ss_pred eeCCCCCc----ceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEE
Q 013840 383 VDKATGVS----KCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 424 (435)
Q Consensus 383 ~~~~~g~~----~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~ 424 (435)
..+.++.- .---||+|....++.+|.++|+|++|+||++...
T Consensus 485 nekq~e~edaeiiVKIFVefS~~~e~~rak~ALdGRfFgGr~VvAE 530 (544)
T KOG0124|consen 485 NEKQGEEEDAEIIVKIFVEFSIASETHRAKQALDGRFFGGRKVVAE 530 (544)
T ss_pred ecccccccchhhhheeeeeechhhHHHHHHHhhccceecCceeehh
Confidence 76532211 1125999999999999999999999999998765
No 19
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.98 E-value=4.5e-31 Score=244.87 Aligned_cols=170 Identities=26% Similarity=0.496 Sum_probs=149.8
Q ss_pred ccceEEEecCCCCCCHHHHHHhhhccCCeeEEEEecCC-CCCcccEEEEEeCCHHHHHHHHHHHcCCCcCCCCcceEEEE
Q 013840 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (435)
Q Consensus 101 ~~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~-~~~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~ 179 (435)
..++|||+|||+++++++|+++|+.||+|+.|+|+.+. +++++|||||+|.++++|++|++.|++.. +.++. |.|.
T Consensus 106 ~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~-l~gr~--i~V~ 182 (346)
T TIGR01659 106 SGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGIT-VRNKR--LKVS 182 (346)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCc-cCCce--eeee
Confidence 36799999999999999999999999999999998875 78899999999999999999999999976 66664 6676
Q ss_pred ecCCHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCCCCCCCCCCCCCccCCCCcCccccCCCCCCCCCCccCcCCCCC
Q 013840 180 WADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVN 259 (435)
Q Consensus 180 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (435)
++.+...
T Consensus 183 ~a~p~~~------------------------------------------------------------------------- 189 (346)
T TIGR01659 183 YARPGGE------------------------------------------------------------------------- 189 (346)
T ss_pred ccccccc-------------------------------------------------------------------------
Confidence 6543110
Q ss_pred CCCCCcCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCC
Q 013840 260 QGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTG 339 (435)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (435)
T Consensus 190 -------------------------------------------------------------------------------- 189 (346)
T TIGR01659 190 -------------------------------------------------------------------------------- 189 (346)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcccCCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCC-
Q 013840 340 SGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGG- 418 (435)
Q Consensus 340 ~~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~g- 418 (435)
....++|||+|||..+|+++|+++|++||+|++|+|++++.+|+++|||||+|.++++|.+|++.||+..+.+
T Consensus 190 ------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~ 263 (346)
T TIGR01659 190 ------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGG 263 (346)
T ss_pred ------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCC
Confidence 0023689999999999999999999999999999999998899999999999999999999999999999876
Q ss_pred -eEEEEEEccCCcCC
Q 013840 419 -KKLKVQLKRDNKQN 432 (435)
Q Consensus 419 -r~i~v~~a~~~~~~ 432 (435)
++|+|.+++.+.+.
T Consensus 264 ~~~l~V~~a~~~~~~ 278 (346)
T TIGR01659 264 SQPLTVRLAEEHGKA 278 (346)
T ss_pred ceeEEEEECCccccc
Confidence 79999999876543
No 20
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.97 E-value=8.9e-31 Score=242.89 Aligned_cols=173 Identities=28% Similarity=0.503 Sum_probs=154.7
Q ss_pred ccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCC
Q 013840 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (435)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~ 87 (435)
.......++|||+|||+++|+++|+++|+.||+|.+|+|+.|+.+++++|||||+|.+.++|++||+.|++..+ ..+
T Consensus 101 ~~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l---~gr 177 (346)
T TIGR01659 101 NDTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITV---RNK 177 (346)
T ss_pred cCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCcc---CCc
Confidence 34566789999999999999999999999999999999999999999999999999999999999999999764 347
Q ss_pred ceeeeccCchhc-cccceEEEecCCCCCCHHHHHHhhhccCCeeEEEEecCC-CCCcccEEEEEeCCHHHHHHHHHHHcC
Q 013840 88 PLQVKYADGELE-RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAING 165 (435)
Q Consensus 88 ~i~~~~~~~~~~-~~~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~-~~~~~g~afV~f~~~e~a~~a~~~l~~ 165 (435)
.|++.++.+... ...++|||+|||.++++++|+++|++||.|..+.++.++ +++++++|||+|.+.++|++|++.|++
T Consensus 178 ~i~V~~a~p~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng 257 (346)
T TIGR01659 178 RLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNN 257 (346)
T ss_pred eeeeecccccccccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 888888765432 236789999999999999999999999999999998876 788999999999999999999999999
Q ss_pred CCcCCCCcceEEEEecCCH
Q 013840 166 KHKMEGSSVPLVVKWADTE 184 (435)
Q Consensus 166 ~~~~~g~~~~l~v~~a~~~ 184 (435)
.. +.+..++|.|.++...
T Consensus 258 ~~-~~g~~~~l~V~~a~~~ 275 (346)
T TIGR01659 258 VI-PEGGSQPLTVRLAEEH 275 (346)
T ss_pred Cc-cCCCceeEEEEECCcc
Confidence 75 6777677999998765
No 21
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.96 E-value=4.8e-29 Score=242.79 Aligned_cols=178 Identities=24% Similarity=0.409 Sum_probs=148.2
Q ss_pred cceEEEecCCCCCCHHHHHHhhhccCCeeEEEEecCC-CCCcccEEEEEeCCHHHHHHHHHHHcCCCcCCCCcceEEEEe
Q 013840 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (435)
Q Consensus 102 ~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~-~~~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~ 180 (435)
.++|||+||++++++++|+++|+.||+|.+|.+..++ +++++|||||+|.+.++|.+|++.|||.. ++|+. |.|.+
T Consensus 107 ~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~-i~GR~--IkV~r 183 (612)
T TIGR01645 107 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQM-LGGRN--IKVGR 183 (612)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeE-Eecce--eeecc
Confidence 4689999999999999999999999999999998875 78899999999999999999999999975 78886 45532
Q ss_pred cCCHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCCCCCCCCCCCCCccCCCCcCccccCCCCCCCCCCccCcCCCCCC
Q 013840 181 ADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQ 260 (435)
Q Consensus 181 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (435)
+.... ..... .
T Consensus 184 p~~~p------------------~a~~~------------~--------------------------------------- 194 (612)
T TIGR01645 184 PSNMP------------------QAQPI------------I--------------------------------------- 194 (612)
T ss_pred ccccc------------------ccccc------------c---------------------------------------
Confidence 11100 00000 0
Q ss_pred CCCCcCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCC
Q 013840 261 GNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGS 340 (435)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (435)
.
T Consensus 195 -------------------------------------------------------------~------------------ 195 (612)
T TIGR01645 195 -------------------------------------------------------------D------------------ 195 (612)
T ss_pred -------------------------------------------------------------c------------------
Confidence 0
Q ss_pred CCcccCCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeE
Q 013840 341 GGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKK 420 (435)
Q Consensus 341 ~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~ 420 (435)
.........++|||+|||.++++++|+++|+.||+|.+|+|.+++.+|+++|||||+|.+.++|.+|+..||++.|+|+.
T Consensus 196 ~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~ 275 (612)
T TIGR01645 196 MVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQY 275 (612)
T ss_pred cccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeE
Confidence 00000113468999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred EEEEEccCCc
Q 013840 421 LKVQLKRDNK 430 (435)
Q Consensus 421 i~v~~a~~~~ 430 (435)
|+|.++..+.
T Consensus 276 LrV~kAi~pP 285 (612)
T TIGR01645 276 LRVGKCVTPP 285 (612)
T ss_pred EEEEecCCCc
Confidence 9999988654
No 22
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=3.2e-28 Score=205.18 Aligned_cols=160 Identities=23% Similarity=0.522 Sum_probs=146.6
Q ss_pred CceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCceeeec
Q 013840 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKY 93 (435)
Q Consensus 14 ~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~~~~ 93 (435)
-..+||+.|...++.++|++.|.+||.|.++++++|..|++++||+||.|.+.++|+.||..|||.. +++ |.|+..|
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqW-lG~--R~IRTNW 138 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQW-LGR--RTIRTNW 138 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCee-ecc--ceeeccc
Confidence 5689999999999999999999999999999999999999999999999999999999999999985 444 9999999
Q ss_pred cCchhccc-----------------cceEEEecCCCCCCHHHHHHhhhccCCeeEEEEecCCCCCcccEEEEEeCCHHHH
Q 013840 94 ADGELERL-----------------EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQA 156 (435)
Q Consensus 94 ~~~~~~~~-----------------~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~~~~~~g~afV~f~~~e~a 156 (435)
+..+.... .++||++|++..+++++|++.|+.||+|.+|+++++ +||+||+|++.|+|
T Consensus 139 ATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~-----qGYaFVrF~tkEaA 213 (321)
T KOG0148|consen 139 ATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD-----QGYAFVRFETKEAA 213 (321)
T ss_pred cccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc-----cceEEEEecchhhH
Confidence 87655332 589999999999999999999999999999999988 89999999999999
Q ss_pred HHHHHHHcCCCcCCCCcceEEEEecCCH
Q 013840 157 LAALEAINGKHKMEGSSVPLVVKWADTE 184 (435)
Q Consensus 157 ~~a~~~l~~~~~~~g~~~~l~v~~a~~~ 184 (435)
..||..+|+.. +.|.. +++.|.+..
T Consensus 214 ahAIv~mNnte-i~G~~--VkCsWGKe~ 238 (321)
T KOG0148|consen 214 AHAIVQMNNTE-IGGQL--VRCSWGKEG 238 (321)
T ss_pred HHHHHHhcCce-eCceE--EEEeccccC
Confidence 99999999987 88876 778887664
No 23
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.96 E-value=2e-28 Score=232.48 Aligned_cols=258 Identities=23% Similarity=0.387 Sum_probs=200.6
Q ss_pred CccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCce
Q 013840 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (435)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i 89 (435)
.....+.|+|+|||..+..++|.++|.+||.|..+.+. +. |. .|+|.|.++.+|+.|.+.|....+.. .++
T Consensus 381 ~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp--~~-G~---~aiv~fl~p~eAr~Afrklaysr~k~---~pl 451 (725)
T KOG0110|consen 381 AERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP--PG-GT---GAIVEFLNPLEARKAFRKLAYSRFKS---APL 451 (725)
T ss_pred hhhhcceeeeccCccccccHHHHHHhhcccccceeecC--cc-cc---eeeeeecCccchHHHHHHhchhhhcc---Ccc
Confidence 44556789999999999999999999999999887443 21 21 69999999999999999887654322 112
Q ss_pred eeeccCch------------------------hc---------------------------cccceEEEecCCCCCCHHH
Q 013840 90 QVKYADGE------------------------LE---------------------------RLEHKLFIGMLPKNVSEAE 118 (435)
Q Consensus 90 ~~~~~~~~------------------------~~---------------------------~~~~~l~v~~lp~~~t~~~ 118 (435)
.+.|+... .. ...++||++||+++.+.++
T Consensus 452 yle~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~ 531 (725)
T KOG0110|consen 452 YLEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLED 531 (725)
T ss_pred ccccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhH
Confidence 11111000 00 0013499999999999999
Q ss_pred HHHhhhccCCeeEEEEecCCCC----CcccEEEEEeCCHHHHHHHHHHHcCCCcCCCCcceEEEEecCCHHHHHHHHHHH
Q 013840 119 VSALFSIYGTIKDLQILRGSQQ----TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQARRAQK 194 (435)
Q Consensus 119 l~~~f~~~g~i~~v~~~~~~~~----~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~a~~~~~~~~~~~~~ 194 (435)
+...|...|.|..+.|...+.+ .+.|||||+|.+.++|+.|++.|+|.. ++|+.+.|.++ .........
T Consensus 532 l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtv-ldGH~l~lk~S--~~k~~~~~g---- 604 (725)
T KOG0110|consen 532 LEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTV-LDGHKLELKIS--ENKPASTVG---- 604 (725)
T ss_pred HHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCce-ecCceEEEEec--cCccccccc----
Confidence 9999999999999998766543 245999999999999999999999976 99998555444 321000000
Q ss_pred HHhhhccCCCCCCCCCCccCCCCCCCCCCCCCCCccCCCCcCccccCCCCCCCCCCccCcCCCCCCCCCCcCCCCCCCCC
Q 013840 195 AQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSN 274 (435)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (435)
T Consensus 605 -------------------------------------------------------------------------------- 604 (725)
T KOG0110|consen 605 -------------------------------------------------------------------------------- 604 (725)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCcccCCCCceEEE
Q 013840 275 MGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSGGQIEGPPGANLFI 354 (435)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V 354 (435)
..-.....++.|+|
T Consensus 605 ------------------------------------------------------------------K~~~~kk~~tKIlV 618 (725)
T KOG0110|consen 605 ------------------------------------------------------------------KKKSKKKKGTKILV 618 (725)
T ss_pred ------------------------------------------------------------------cccccccccceeee
Confidence 00000113579999
Q ss_pred eCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEccCC
Q 013840 355 YHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRDN 429 (435)
Q Consensus 355 ~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a~~~ 429 (435)
+|||+..+-.+++.+|+.||.|.+|+|+.....+.++|||||+|-++.+|.+|+.+|...+|.||+|.+.||++-
T Consensus 619 RNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d 693 (725)
T KOG0110|consen 619 RNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSD 693 (725)
T ss_pred eccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccc
Confidence 999999999999999999999999999876557888999999999999999999999999999999999999864
No 24
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=3.9e-28 Score=217.26 Aligned_cols=172 Identities=30% Similarity=0.586 Sum_probs=157.9
Q ss_pred cceEEEecCCCCCCHHHHHHhhhccCCeeEEEEecCC-CCCcccEEEEEeCCHHHHHHHHHHHcCCCcCCCCcceEEEEe
Q 013840 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (435)
Q Consensus 102 ~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~-~~~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~ 180 (435)
..++||+-+|..|+|.||+++|++||.|.+|.+++|+ ++.++|||||+|.+.++|.+|+..||....+.|-..+|.|++
T Consensus 34 ~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~ 113 (510)
T KOG0144|consen 34 AVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKY 113 (510)
T ss_pred hhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecc
Confidence 4679999999999999999999999999999999998 788999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCCCCCCCCCCCCCccCCCCcCccccCCCCCCCCCCccCcCCCCCC
Q 013840 181 ADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQ 260 (435)
Q Consensus 181 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (435)
+..++++.
T Consensus 114 Ad~E~er~------------------------------------------------------------------------ 121 (510)
T KOG0144|consen 114 ADGERERI------------------------------------------------------------------------ 121 (510)
T ss_pred cchhhhcc------------------------------------------------------------------------
Confidence 98875432
Q ss_pred CCCCcCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCC
Q 013840 261 GNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGS 340 (435)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (435)
T Consensus 122 -------------------------------------------------------------------------------- 121 (510)
T KOG0144|consen 122 -------------------------------------------------------------------------------- 121 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccCCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCc-eeCC-
Q 013840 341 GGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGC-QLGG- 418 (435)
Q Consensus 341 ~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~-~l~g- 418 (435)
...+.|||+-|+..+||.|++++|++||.|.+|.|++|. .+.+||||||.|.+.|-|..|++.|||. .+.|
T Consensus 122 ------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGc 194 (510)
T KOG0144|consen 122 ------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGC 194 (510)
T ss_pred ------ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccC
Confidence 134689999999999999999999999999999999995 8999999999999999999999999987 4666
Q ss_pred -eEEEEEEccCCcCC
Q 013840 419 -KKLKVQLKRDNKQN 432 (435)
Q Consensus 419 -r~i~v~~a~~~~~~ 432 (435)
.+|.|+||..++++
T Consensus 195 s~PLVVkFADtqkdk 209 (510)
T KOG0144|consen 195 SQPLVVKFADTQKDK 209 (510)
T ss_pred CCceEEEecccCCCc
Confidence 59999999988754
No 25
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.95 E-value=3.9e-25 Score=198.15 Aligned_cols=150 Identities=19% Similarity=0.377 Sum_probs=128.8
Q ss_pred CCceEEEecCCCCCCHHHHHHHHhc-cCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCceee
Q 013840 13 ERVKLFVGQVPKHMTEAQLLAMFKE-FALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 91 (435)
Q Consensus 13 ~~~~l~v~nLp~~~t~~~l~~~f~~-~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~~ 91 (435)
..+.+||.|||++..+.+|+++|.+ .|.|+.|.+.-|.. ++++|+|.|+|+++|.+++|++.||... + .++++.+
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~-GK~rGcavVEFk~~E~~qKa~E~lnk~~-~--~GR~l~v 118 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDES-GKARGCAVVEFKDPENVQKALEKLNKYE-V--NGRELVV 118 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccC-CCcCCceEEEeeCHHHHHHHHHHhhhcc-c--cCceEEE
Confidence 3467999999999999999999965 79999999999984 9999999999999999999999998754 3 3377776
Q ss_pred eccCchhccc----------------------------------------------------------------------
Q 013840 92 KYADGELERL---------------------------------------------------------------------- 101 (435)
Q Consensus 92 ~~~~~~~~~~---------------------------------------------------------------------- 101 (435)
+-...++...
T Consensus 119 KEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfg 198 (608)
T KOG4212|consen 119 KEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFG 198 (608)
T ss_pred eccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhccc
Confidence 6443222111
Q ss_pred ----------------cceEEEecCCCCCCHHHHHHhhhccCCeeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHHcC
Q 013840 102 ----------------EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 165 (435)
Q Consensus 102 ----------------~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~~~~~~g~afV~f~~~e~a~~a~~~l~~ 165 (435)
-..+||.||.+.+..++|++.|...|.|+.|.+..++.|.++|+|.++|.++-.|..||..+++
T Consensus 199 l~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~ 278 (608)
T KOG4212|consen 199 LSASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDR 278 (608)
T ss_pred chhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhcc
Confidence 0468999999999999999999999999999999999999999999999999999999999986
Q ss_pred C
Q 013840 166 K 166 (435)
Q Consensus 166 ~ 166 (435)
.
T Consensus 279 ~ 279 (608)
T KOG4212|consen 279 Q 279 (608)
T ss_pred C
Confidence 3
No 26
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.95 E-value=4.3e-27 Score=224.38 Aligned_cols=167 Identities=26% Similarity=0.579 Sum_probs=147.5
Q ss_pred cceEEEecCCCCCCHHHHHHhhhccCCeeEEEEecCC-CCCcccEEEEEeCCHHHHHHHHHHHcCCCcCCCCcceEEEEe
Q 013840 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (435)
Q Consensus 102 ~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~-~~~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~ 180 (435)
..+|||+|||.++++++|+++|+.||+|.+|+++.++ +|+++|||||+|.+.++|.+|++.|+|.. +.|+. |.|.+
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~-l~g~~--i~v~~ 79 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLR-LQNKT--IKVSY 79 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEE-ECCee--EEEEe
Confidence 4689999999999999999999999999999998875 78899999999999999999999999976 77775 67776
Q ss_pred cCCHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCCCCCCCCCCCCCccCCCCcCccccCCCCCCCCCCccCcCCCCCC
Q 013840 181 ADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQ 260 (435)
Q Consensus 181 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (435)
+.+...
T Consensus 80 a~~~~~-------------------------------------------------------------------------- 85 (352)
T TIGR01661 80 ARPSSD-------------------------------------------------------------------------- 85 (352)
T ss_pred eccccc--------------------------------------------------------------------------
Confidence 643210
Q ss_pred CCCCcCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCC
Q 013840 261 GNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGS 340 (435)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (435)
T Consensus 86 -------------------------------------------------------------------------------- 85 (352)
T TIGR01661 86 -------------------------------------------------------------------------------- 85 (352)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccCCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCC--
Q 013840 341 GGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGG-- 418 (435)
Q Consensus 341 ~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~g-- 418 (435)
....++|||+|||..+++++|+++|+.||.|..+.++.+..++.++|||||+|.+.++|++|++.|||..+.|
T Consensus 86 -----~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~ 160 (352)
T TIGR01661 86 -----SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCT 160 (352)
T ss_pred -----ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCc
Confidence 0034689999999999999999999999999999999887788999999999999999999999999999987
Q ss_pred eEEEEEEccCCc
Q 013840 419 KKLKVQLKRDNK 430 (435)
Q Consensus 419 r~i~v~~a~~~~ 430 (435)
++|.|.++....
T Consensus 161 ~~i~v~~a~~~~ 172 (352)
T TIGR01661 161 EPITVKFANNPS 172 (352)
T ss_pred eeEEEEECCCCC
Confidence 678999987554
No 27
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.95 E-value=8.9e-28 Score=222.13 Aligned_cols=168 Identities=26% Similarity=0.445 Sum_probs=146.1
Q ss_pred ccccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCC
Q 013840 6 KEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGA 85 (435)
Q Consensus 6 ~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~ 85 (435)
....+++..+++|+--|....+..+|.+||+.+|.|..|.+|.|+.++.++|.|||+|.+.+++..|| .|.|+.+ .
T Consensus 171 ~l~~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrl-l-- 246 (549)
T KOG0147|consen 171 ILSPEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRL-L-- 246 (549)
T ss_pred cCCchHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcc-c--
Confidence 33456677899999999999999999999999999999999999999999999999999999999999 6888764 3
Q ss_pred CCceeeeccCchhccc---------------cceEEEecCCCCCCHHHHHHhhhccCCeeEEEEecCC-CCCcccEEEEE
Q 013840 86 SSPLQVKYADGELERL---------------EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLK 149 (435)
Q Consensus 86 ~~~i~~~~~~~~~~~~---------------~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~-~~~~~g~afV~ 149 (435)
+.+|.++.+..+.... -..++|+||..+++++.|+.+|+.||.|+.|.+..+. +|+++||+||+
T Consensus 247 g~pv~vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~ 326 (549)
T KOG0147|consen 247 GVPVIVQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFIT 326 (549)
T ss_pred CceeEecccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEE
Confidence 3788877765544332 1238999999999999999999999999999998886 99999999999
Q ss_pred eCCHHHHHHHHHHHcCCCcCCCCcceEEE
Q 013840 150 YETKEQALAALEAINGKHKMEGSSVPLVV 178 (435)
Q Consensus 150 f~~~e~a~~a~~~l~~~~~~~g~~~~l~v 178 (435)
|.+.++|++|++.||| ..+-|+.+.+.+
T Consensus 327 f~~~~~ar~a~e~lng-felAGr~ikV~~ 354 (549)
T KOG0147|consen 327 FVNKEDARKALEQLNG-FELAGRLIKVSV 354 (549)
T ss_pred EecHHHHHHHHHHhcc-ceecCceEEEEE
Confidence 9999999999999999 568888755443
No 28
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.95 E-value=5.6e-26 Score=224.11 Aligned_cols=177 Identities=28% Similarity=0.515 Sum_probs=146.4
Q ss_pred ccceEEEecCCCCCCHHHHHHhhhccCCeeEEEEecCC-CCCcccEEEEEeCCHHHHHHHHHHHcCCCcCCCCcceEEEE
Q 013840 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (435)
Q Consensus 101 ~~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~-~~~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~ 179 (435)
..++|||+|||..+++++|+++|+.||.|..|.++.+. +++++|||||+|.+.++|.+|+. |+|.. +.|+. |.|.
T Consensus 88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~-~~g~~--i~v~ 163 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQM-LLGRP--IIVQ 163 (457)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCE-ECCee--eEEe
Confidence 36799999999999999999999999999999998875 78899999999999999999996 78876 66665 5555
Q ss_pred ecCCHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCCCCCCCCCCCCCccCCCCcCccccCCCCCCCCCCccCcCCCCC
Q 013840 180 WADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVN 259 (435)
Q Consensus 180 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (435)
+.......... ....
T Consensus 164 ~~~~~~~~~~~-------~~~~---------------------------------------------------------- 178 (457)
T TIGR01622 164 SSQAEKNRAAK-------AATH---------------------------------------------------------- 178 (457)
T ss_pred ecchhhhhhhh-------cccc----------------------------------------------------------
Confidence 43322111000 0000
Q ss_pred CCCCCcCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCC
Q 013840 260 QGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTG 339 (435)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (435)
T Consensus 179 -------------------------------------------------------------------------------- 178 (457)
T TIGR01622 179 -------------------------------------------------------------------------------- 178 (457)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcccCCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCe
Q 013840 340 SGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGK 419 (435)
Q Consensus 340 ~~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr 419 (435)
.....+..++|||+|||..+|+++|+++|+.||.|.+|.|+.+..+|+++|||||+|.+.++|.+|+..|||..|.|+
T Consensus 179 --~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~ 256 (457)
T TIGR01622 179 --QPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGR 256 (457)
T ss_pred --cCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCE
Confidence 000001247999999999999999999999999999999999988889999999999999999999999999999999
Q ss_pred EEEEEEccC
Q 013840 420 KLKVQLKRD 428 (435)
Q Consensus 420 ~i~v~~a~~ 428 (435)
.|+|.|+..
T Consensus 257 ~i~v~~a~~ 265 (457)
T TIGR01622 257 PIKVGYAQD 265 (457)
T ss_pred EEEEEEccC
Confidence 999999874
No 29
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.94 E-value=6e-26 Score=201.87 Aligned_cols=311 Identities=20% Similarity=0.278 Sum_probs=201.0
Q ss_pred ccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCcee
Q 013840 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (435)
Q Consensus 11 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~ 90 (435)
..+++.|.+||||++++|+||..++.+||.|.++.+.+.+. .||++|.+.++|...+...... .-.-+++++.
T Consensus 25 ~~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGkn------QAflem~d~~sAvtmv~~y~~~-~p~lr~~~~y 97 (492)
T KOG1190|consen 25 AEPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKN------QAFLEMADEESAVTMVNYYTSV-TPVLRGQPIY 97 (492)
T ss_pred cCCcceeEeccCCccccHHHHHHhcccccceeeeeeeccch------hhhhhhcchhhhhheeeccccc-CccccCccee
Confidence 34789999999999999999999999999999999887664 9999999999999844332211 0111223333
Q ss_pred eeccCchhcc-----------------------------------------ccceEEEecCCCCCCHHHHHHhhhccCCe
Q 013840 91 VKYADGELER-----------------------------------------LEHKLFIGMLPKNVSEAEVSALFSIYGTI 129 (435)
Q Consensus 91 ~~~~~~~~~~-----------------------------------------~~~~l~v~~lp~~~t~~~l~~~f~~~g~i 129 (435)
+.++.-..-. .--++++.++-+.++.|.|+.+|++||.|
T Consensus 98 iq~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~V 177 (492)
T KOG1190|consen 98 IQYSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFV 177 (492)
T ss_pred ehhhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhccee
Confidence 3333211100 01246788888999999999999999999
Q ss_pred eEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHHcCCCcCCCCcceEEEEecCCHHHHHHHHHHHHHhhhccCCCCCCCC
Q 013840 130 KDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQARRAQKAQSQANNLPNADSQH 209 (435)
Q Consensus 130 ~~v~~~~~~~~~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (435)
.+|.-+.... .-.|+|+|.+.+.|..|...|+|..+++|| +.|+|.+.........-...+.+..+
T Consensus 178 lKIiTF~Knn---~FQALvQy~d~~sAq~AK~aLdGqnIyngc-CtLrId~Sklt~LnvKynndkSRDyT---------- 243 (492)
T KOG1190|consen 178 LKIITFTKNN---GFQALVQYTDAVSAQAAKLALDGQNIYNGC-CTLRIDFSKLTDLNVKYNNDKSRDYT---------- 243 (492)
T ss_pred EEEEEEeccc---chhhhhhccchhhHHHHHHhccCCcccCce-eEEEeehhhcccceeecccccccccc----------
Confidence 9887665432 348999999999999999999999999988 45777766553221111111111111
Q ss_pred CCccCCCCCCCCCCCCCCCccCCCCcCccccCCCCCCCCCCccCcCCCCCCCCCCcCCCCCCCCCCCCCccCCCCCCCCC
Q 013840 210 PSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVG 289 (435)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (435)
.|..+.+..+ +...+.+.....
T Consensus 244 ------------np~LP~gd~~-----------------p~l~~~~~aa~~----------------------------- 265 (492)
T KOG1190|consen 244 ------------NPDLPVGDGQ-----------------PSLDQLMAAAFG----------------------------- 265 (492)
T ss_pred ------------CCCCCCCccc-----------------cccchhhhcccc-----------------------------
Confidence 1111111000 000000000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCcccCCCCceEEEeCCC-CCCCHHHHHH
Q 013840 290 SGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSGGQIEGPPGANLFIYHIP-QEFGDQELGN 368 (435)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~nLp-~~~t~~~L~~ 368 (435)
..+...+ .+...|.+..+ + ....+..+... .+++|.|.||. +.||.+-|+.
T Consensus 266 -~~~~~~g--~p~aip~~~~~-------------a---------~~a~~~~~~~~---~n~vllvsnln~~~VT~d~Lft 317 (492)
T KOG1190|consen 266 -SVPAVHG--APLAIPSGAAG-------------A---------NAADGKIESPS---ANVVLLVSNLNEEAVTPDVLFT 317 (492)
T ss_pred -ccccccC--CcccCCccchh-------------h---------cccccccccCC---CceEEEEecCchhccchhHHHH
Confidence 0000000 00000000000 0 00000000000 25899999995 6799999999
Q ss_pred HhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEccCCcCCC
Q 013840 369 AFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRDNKQNK 433 (435)
Q Consensus 369 ~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a~~~~~~~ 433 (435)
+|+.||.|.+|+|+.++. .-|+|+|.+...|+.|+..|+|..+.|++|+|.++|...-..
T Consensus 318 lFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vql 377 (492)
T KOG1190|consen 318 LFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQL 377 (492)
T ss_pred HHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccC
Confidence 999999999999998753 469999999999999999999999999999999998765443
No 30
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=5e-26 Score=190.67 Aligned_cols=169 Identities=27% Similarity=0.562 Sum_probs=150.8
Q ss_pred ccceEEEecCCCCCCHHHHHHhhhccCCeeEEEEecCC-CCCcccEEEEEeCCHHHHHHHHHHHcCCCcCCCCcceEEEE
Q 013840 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (435)
Q Consensus 101 ~~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~-~~~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~ 179 (435)
..+.+.|.-||.++|+|||+.+|...|+|++|++++++ +|++-||+||.|-+++||++|+..|||.. +.. ..++|+
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLr-LQ~--KTIKVS 116 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLR-LQN--KTIKVS 116 (360)
T ss_pred ccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhccee-ecc--ceEEEE
Confidence 35679999999999999999999999999999999998 89999999999999999999999999976 333 348888
Q ss_pred ecCCHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCCCCCCCCCCCCCccCCCCcCccccCCCCCCCCCCccCcCCCCC
Q 013840 180 WADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVN 259 (435)
Q Consensus 180 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (435)
++.+...
T Consensus 117 yARPSs~------------------------------------------------------------------------- 123 (360)
T KOG0145|consen 117 YARPSSD------------------------------------------------------------------------- 123 (360)
T ss_pred eccCChh-------------------------------------------------------------------------
Confidence 8877421
Q ss_pred CCCCCcCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCC
Q 013840 260 QGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTG 339 (435)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (435)
T Consensus 124 -------------------------------------------------------------------------------- 123 (360)
T KOG0145|consen 124 -------------------------------------------------------------------------------- 123 (360)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcccCCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCC-
Q 013840 340 SGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGG- 418 (435)
Q Consensus 340 ~~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~g- 418 (435)
.-.+.+|||.+||..+|..||.++|+.||.|+.-+|+.|.-+|.++|.|||.|..++||..|+..|||.+=.|
T Consensus 124 ------~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~ 197 (360)
T KOG0145|consen 124 ------SIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGC 197 (360)
T ss_pred ------hhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCC
Confidence 1145789999999999999999999999999999999998899999999999999999999999999998777
Q ss_pred -eEEEEEEccCCcC
Q 013840 419 -KKLKVQLKRDNKQ 431 (435)
Q Consensus 419 -r~i~v~~a~~~~~ 431 (435)
.+|.|+||.....
T Consensus 198 tepItVKFannPsq 211 (360)
T KOG0145|consen 198 TEPITVKFANNPSQ 211 (360)
T ss_pred CCCeEEEecCCccc
Confidence 4899999987643
No 31
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.93 E-value=7.8e-26 Score=179.95 Aligned_cols=172 Identities=30% Similarity=0.470 Sum_probs=149.2
Q ss_pred cccceEEEecCCCCCCHHHHHHhhhccCCeeEEEEecCC-CCCcccEEEEEeCCHHHHHHHHHHHcCCCcCCCCcceEEE
Q 013840 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (435)
Q Consensus 100 ~~~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~-~~~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v 178 (435)
.++.+|||+||+..++++-|+++|-+.|+|.+++++++. ++..+|||||+|.++|+|..|++.||... +-|+ +|.|
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~Vk-LYgr--pIrv 83 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVK-LYGR--PIRV 83 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHH-hcCc--eeEE
Confidence 346799999999999999999999999999999999987 66689999999999999999999999766 4445 3677
Q ss_pred EecCCHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCCCCCCCCCCCCCccCCCCcCccccCCCCCCCCCCccCcCCCC
Q 013840 179 KWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPV 258 (435)
Q Consensus 179 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (435)
..+...+
T Consensus 84 ~kas~~~------------------------------------------------------------------------- 90 (203)
T KOG0131|consen 84 NKASAHQ------------------------------------------------------------------------- 90 (203)
T ss_pred Eeccccc-------------------------------------------------------------------------
Confidence 6554210
Q ss_pred CCCCCCcCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCC
Q 013840 259 NQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGT 338 (435)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (435)
T Consensus 91 -------------------------------------------------------------------------------- 90 (203)
T KOG0131|consen 91 -------------------------------------------------------------------------------- 90 (203)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccCCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEE-EEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeC
Q 013840 339 GSGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSA-KVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLG 417 (435)
Q Consensus 339 ~~~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v-~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~ 417 (435)
.+...+.++||+||...+++..|.+.|+.||.+.+. +|+++..+|.++|||||.|++.+.+.+|+..|||+.+.
T Consensus 91 -----~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~ 165 (203)
T KOG0131|consen 91 -----KNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLC 165 (203)
T ss_pred -----ccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhc
Confidence 001134689999999999999999999999999875 89999989999999999999999999999999999999
Q ss_pred CeEEEEEEccCCcCC
Q 013840 418 GKKLKVQLKRDNKQN 432 (435)
Q Consensus 418 gr~i~v~~a~~~~~~ 432 (435)
+++|.|+++..+..+
T Consensus 166 nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 166 NRPITVSYAFKKDTK 180 (203)
T ss_pred CCceEEEEEEecCCC
Confidence 999999999877654
No 32
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.93 E-value=1.8e-23 Score=183.91 Aligned_cols=325 Identities=18% Similarity=0.240 Sum_probs=211.8
Q ss_pred cccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCC
Q 013840 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (435)
Q Consensus 7 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~ 86 (435)
+.-....+..|.|++|-..++|.+|.+.++.||+|..+.++..+. .|.|+|++.+.|+.++...-...+.-+.
T Consensus 24 dphk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r------~alvefedi~~akn~Vnfaa~n~i~i~g- 96 (494)
T KOG1456|consen 24 DPHKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKR------QALVEFEDIEGAKNCVNFAADNQIYIAG- 96 (494)
T ss_pred CCCCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccccc------eeeeeeccccchhhheehhccCcccccC-
Confidence 445567889999999999999999999999999999888766654 8999999999999999765443332221
Q ss_pred CceeeeccC--------chhccccceEEEe--cCCCCCCHHHHHHhhhccCCeeEEEEecCCCCCcccEEEEEeCCHHHH
Q 013840 87 SPLQVKYAD--------GELERLEHKLFIG--MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQA 156 (435)
Q Consensus 87 ~~i~~~~~~--------~~~~~~~~~l~v~--~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~~~~~~g~afV~f~~~e~a 156 (435)
+.-.+.++. .+.......|.++ |--+.+|.+.|++++...|+|.+|.|++.. --+|.|+|++.+.|
T Consensus 97 q~Al~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkn----gVQAmVEFdsv~~A 172 (494)
T KOG1456|consen 97 QQALFNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKN----GVQAMVEFDSVEVA 172 (494)
T ss_pred chhhcccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEecc----ceeeEEeechhHHH
Confidence 211222221 1111113444444 445679999999999999999999998762 34899999999999
Q ss_pred HHHHHHHcCCCcCCCCcceEEEEecCCHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCCCCCCCCCCCCCccCCCCcC
Q 013840 157 LAALEAINGKHKMEGSSVPLVVKWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYG 236 (435)
Q Consensus 157 ~~a~~~l~~~~~~~g~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (435)
++|.+.|||..++.|| +.|+|.+|++.+....+..+.....+. |..+.. .-++ -.++....++
T Consensus 173 qrAk~alNGADIYsGC-CTLKIeyAkP~rlnV~knd~DtwDyTl--p~~~~~-------~~~g-~~~~~r~~~p------ 235 (494)
T KOG1456|consen 173 QRAKAALNGADIYSGC-CTLKIEYAKPTRLNVQKNDKDTWDYTL--PDLRGP-------YDPG-RNHYDRQRQP------ 235 (494)
T ss_pred HHHHhhcccccccccc-eeEEEEecCcceeeeeecCCccccccC--CCCCCC-------CCCC-CCCCccccCC------
Confidence 9999999999999988 579999999986554443222221111 110000 0000 0000000000
Q ss_pred ccccCCCCCCCCCCccCcCCCCCCCCCCcCCCCCCCCCCCCCccCCCCCCCCC--CCCCC--CCCCCCCCCCCCCCCCCC
Q 013840 237 LMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVG--SGYPA--VPGLQYPMPYPGGMLGHR 312 (435)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~ 312 (435)
......|..+-| ..|.. +.+.+++
T Consensus 236 -----------------------------------------~~~~~~pss~~G~h~~y~sg~~~~p~~~----------- 263 (494)
T KOG1456|consen 236 -----------------------------------------APLGYHPSSRGGGHSGYYSGDRHGPPHP----------- 263 (494)
T ss_pred -----------------------------------------CccCCChhhcCCCCCCCcccccCCCCCC-----------
Confidence 000111111111 01100 0011000
Q ss_pred CCCCCCCCCCCccCCCCCCCCCCCCCCCCCcccCCCCceEEEeCCC-CCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcc
Q 013840 313 PLNNSPGSVSPAVANSNPSTSSSGGTGSGGQIEGPPGANLFIYHIP-QEFGDQELGNAFQAFGRVLSAKVFVDKATGVSK 391 (435)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~nLp-~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~ 391 (435)
++..-........ ...+.....++++++|.+|+ ..++.+.|+.+|+.||.|.+|+.|+.+ .
T Consensus 264 ---~P~r~~~~~~~~~----------g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~ 325 (494)
T KOG1456|consen 264 ---PPSRYRDGYRDGR----------GYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----P 325 (494)
T ss_pred ---CCCCCccccccCC----------CCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----c
Confidence 0000000000000 01111233477999999997 568999999999999999999999886 5
Q ss_pred eEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEccCC
Q 013840 392 CFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRDN 429 (435)
Q Consensus 392 g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a~~~ 429 (435)
|.|+|++.+..+.++|+..||+..+.|.+|.|.+++-.
T Consensus 326 gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~ 363 (494)
T KOG1456|consen 326 GTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQN 363 (494)
T ss_pred ceeEEEcCcHHHHHHHHHHhccCccccceEEEeecccc
Confidence 78999999999999999999999999999999887643
No 33
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.93 E-value=1.6e-24 Score=211.22 Aligned_cols=196 Identities=24% Similarity=0.325 Sum_probs=152.5
Q ss_pred CHHHHHHHHHHhcCCCcCCCCCCceeeecc------CchhccccceEEEecCCCCCCHHHHHHhhhccCCeeEEEEecCC
Q 013840 65 SRQEADKAVNACHNKKTLPGASSPLQVKYA------DGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS 138 (435)
Q Consensus 65 ~~e~a~~al~~l~~~~~~~~~~~~i~~~~~------~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~ 138 (435)
-.++|.+||..+++..+.. ......+. +.......++|||+|||.++++++|+++|+.+|.|.+++|+++.
T Consensus 18 ~~~~a~~a~~~~~gy~~~~---~~g~r~~g~Pp~~~~~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~ 94 (578)
T TIGR01648 18 PDEAALKALLERTGYTLVQ---ENGQRKYGGPPPGWSGVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDF 94 (578)
T ss_pred ccHHHHHHHHHhhCccccc---cCCcccCCCCCCcccCCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECC
Confidence 4688999998887764321 11111111 11122336899999999999999999999999999999999988
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHHcCCCcCCCCcceEEEEecCCHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCCC
Q 013840 139 QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPM 218 (435)
Q Consensus 139 ~~~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (435)
+++++|||||+|.+.++|.+|++.||+..+..|+. +.+.++
T Consensus 95 sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~--l~V~~S------------------------------------- 135 (578)
T TIGR01648 95 SGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRL--LGVCIS------------------------------------- 135 (578)
T ss_pred CCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcc--cccccc-------------------------------------
Confidence 99999999999999999999999999976444543 222110
Q ss_pred CCCCCCCCCCccCCCCcCccccCCCCCCCCCCccCcCCCCCCCCCCcCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCC
Q 013840 219 GYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGL 298 (435)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (435)
T Consensus 136 -------------------------------------------------------------------------------- 135 (578)
T TIGR01648 136 -------------------------------------------------------------------------------- 135 (578)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCcccCCCCceEEEeCCCCCCCHHHHHHHhhcCCc-EE
Q 013840 299 QYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGR-VL 377 (435)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~-v~ 377 (435)
...++|||+|||..+|+++|+++|+++++ ++
T Consensus 136 ------------------------------------------------~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv 167 (578)
T TIGR01648 136 ------------------------------------------------VDNCRLFVGGIPKNKKREEILEEFSKVTEGVV 167 (578)
T ss_pred ------------------------------------------------ccCceeEeecCCcchhhHHHHHHhhcccCCce
Confidence 03478999999999999999999999874 55
Q ss_pred EEEEEe-eCCCCCcceEEEEEeCCHHHHHHHHHhcCC--ceeCCeEEEEEEccCCc
Q 013840 378 SAKVFV-DKATGVSKCFGFVSYESPASAQNAIAMMNG--CQLGGKKLKVQLKRDNK 430 (435)
Q Consensus 378 ~v~i~~-~~~~g~~~g~afV~F~~~~~A~~A~~~l~g--~~l~gr~i~v~~a~~~~ 430 (435)
.+.+.. ...+++++|||||+|.+.++|..|++.|+. ..+.|+.|.|+|+..+.
T Consensus 168 ~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~ 223 (578)
T TIGR01648 168 DVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEE 223 (578)
T ss_pred EEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeecccc
Confidence 554432 234578899999999999999999988864 46889999999998754
No 34
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.93 E-value=2.8e-23 Score=189.91 Aligned_cols=155 Identities=17% Similarity=0.295 Sum_probs=123.1
Q ss_pred CccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCce
Q 013840 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (435)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i 89 (435)
+......|.+++|||+||++||.+||+.++ |.++++.+. +++.+|-|||+|.+.|++++||+. +...+.. +-|
T Consensus 6 e~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~Alkk--dR~~mg~--RYI 78 (510)
T KOG4211|consen 6 EGSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRR--NGRPSGEAYVEFTSEEDVEKALKK--DRESMGH--RYI 78 (510)
T ss_pred CCCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEecc--CCCcCcceEEEeechHHHHHHHHh--hHHHhCC--ceE
Confidence 556677899999999999999999999996 787665554 589999999999999999999976 3333443 555
Q ss_pred eeeccCchhc------------cccceEEEecCCCCCCHHHHHHhhhccCCeeE-EEEecCCCCCcccEEEEEeCCHHHH
Q 013840 90 QVKYADGELE------------RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKD-LQILRGSQQTSKGCAFLKYETKEQA 156 (435)
Q Consensus 90 ~~~~~~~~~~------------~~~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~-v~~~~~~~~~~~g~afV~f~~~e~a 156 (435)
.|-.+..... ..+..|.+++||+.|+++||.++|+-.-.+.. |.++.+..+++.|.|||+|++.+.|
T Consensus 79 EVf~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~a 158 (510)
T KOG4211|consen 79 EVFTAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESA 158 (510)
T ss_pred EEEccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHH
Confidence 5554432221 23578999999999999999999997765554 7778888889999999999999999
Q ss_pred HHHHHHHcCCCcCCCCc
Q 013840 157 LAALEAINGKHKMEGSS 173 (435)
Q Consensus 157 ~~a~~~l~~~~~~~g~~ 173 (435)
++|+..... .|..+-
T Consensus 159 e~Al~rhre--~iGhRY 173 (510)
T KOG4211|consen 159 EIALGRHRE--NIGHRY 173 (510)
T ss_pred HHHHHHHHH--hhccce
Confidence 999986443 365554
No 35
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.92 E-value=3.1e-23 Score=207.53 Aligned_cols=83 Identities=29% Similarity=0.518 Sum_probs=78.4
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 427 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a~ 427 (435)
..++|||+|||..+|+++|+++|+.||.|..+.|+.+..+|.++|||||+|.+.++|..|++.|||..|+|+.|+|.++.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 45799999999999999999999999999999999998899999999999999999999999999999999999999986
Q ss_pred CCc
Q 013840 428 DNK 430 (435)
Q Consensus 428 ~~~ 430 (435)
...
T Consensus 374 ~~~ 376 (509)
T TIGR01642 374 VGA 376 (509)
T ss_pred cCC
Confidence 543
No 36
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=3.4e-22 Score=180.28 Aligned_cols=170 Identities=25% Similarity=0.408 Sum_probs=142.8
Q ss_pred ccCCceEEEecCCCCCCHHHHHHHHhccCc-eeEEEEEecCC-CCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCc
Q 013840 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFAL-VDEVNIIKDKT-TRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (435)
Q Consensus 11 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~-i~~~~~~~~~~-~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~ 88 (435)
...+|.|||+|||..+++++|++.+++.++ |++|.+..+.. ..+++|||||+|.+.-.|..|-+.|-.-. +.-++..
T Consensus 161 Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~-~klwgn~ 239 (506)
T KOG0117|consen 161 SVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGK-IKLWGNA 239 (506)
T ss_pred eeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCc-eeecCCc
Confidence 357899999999999999999999999876 56677766432 35799999999999999999988764332 2235588
Q ss_pred eeeeccCchhccc------cceEEEecCCCCCCHHHHHHhhhccCCeeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHH
Q 013840 89 LQVKYADGELERL------EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEA 162 (435)
Q Consensus 89 i~~~~~~~~~~~~------~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~~~~~~g~afV~f~~~e~a~~a~~~ 162 (435)
+.|.|++++.+.. -..|||+||+.++|+|.|+++|+.||.|++|+.++| ||||.|.+.++|.+|++.
T Consensus 240 ~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD-------YaFVHf~eR~davkAm~~ 312 (506)
T KOG0117|consen 240 ITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD-------YAFVHFAEREDAVKAMKE 312 (506)
T ss_pred ceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc-------eeEEeecchHHHHHHHHH
Confidence 9999998877654 357999999999999999999999999999998866 999999999999999999
Q ss_pred HcCCCcCCCCcceEEEEecCCHHHHHHHH
Q 013840 163 INGKHKMEGSSVPLVVKWADTEKERQARR 191 (435)
Q Consensus 163 l~~~~~~~g~~~~l~v~~a~~~~~~~~~~ 191 (435)
+||+. ++|.. |.|..|++..++...+
T Consensus 313 ~ngke-ldG~~--iEvtLAKP~~k~k~~r 338 (506)
T KOG0117|consen 313 TNGKE-LDGSP--IEVTLAKPVDKKKKER 338 (506)
T ss_pred hcCce-ecCce--EEEEecCChhhhccch
Confidence 99987 89986 7777788776655544
No 37
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=1.3e-23 Score=193.53 Aligned_cols=192 Identities=22% Similarity=0.387 Sum_probs=149.1
Q ss_pred ceEEEecCCCCCCHHHHHHhhhccCCeeEEEEecCC-CCCcccEEEEEeCCHHHHHHHHHHHcCCCcCCCCcceEEEEec
Q 013840 103 HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181 (435)
Q Consensus 103 ~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~-~~~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~a 181 (435)
.||||++||++++.++|.++|+.+|+|..+.++.+. ++..+||+||+|+..||+++|+...++.. +.|+. +.+..+
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~k-f~Gr~--l~v~~A 82 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSK-FEGRI--LNVDPA 82 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCc-cccee--cccccc
Confidence 589999999999999999999999999999998886 66889999999999999999999999877 88887 555555
Q ss_pred CCHHHHHHH-HHHHHHhhhccCCCCCCCCCCccCCCCCCCCCCCCCCCccCCCCcCccccCCCCCCCCCCccCcCCCCCC
Q 013840 182 DTEKERQAR-RAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQ 260 (435)
Q Consensus 182 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (435)
......... .....+.. .
T Consensus 83 ~~R~r~e~~~~~e~~~ve---K---------------------------------------------------------- 101 (678)
T KOG0127|consen 83 KKRARSEEVEKGENKAVE---K---------------------------------------------------------- 101 (678)
T ss_pred cccccchhcccccchhhh---c----------------------------------------------------------
Confidence 443211100 00000000 0
Q ss_pred CCCCcCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCC
Q 013840 261 GNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGS 340 (435)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (435)
+. .+ ...
T Consensus 102 ----------------------------------------------------~~-------~q--------------~~~ 108 (678)
T KOG0127|consen 102 ----------------------------------------------------PI-------EQ--------------KRP 108 (678)
T ss_pred ----------------------------------------------------cc-------cc--------------CCc
Confidence 00 00 000
Q ss_pred CCcccCCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeE
Q 013840 341 GGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKK 420 (435)
Q Consensus 341 ~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~ 420 (435)
...-...+-..|+|+|||+.+...+|+.+|+.||.|..|.|++.. .|+..|||||+|....+|..|++.||+..|.||+
T Consensus 109 ~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~-dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~ 187 (678)
T KOG0127|consen 109 TKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK-DGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRP 187 (678)
T ss_pred chhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC-CCCccceEEEEEeeHHHHHHHHHhccCceecCce
Confidence 000001125789999999999999999999999999999999776 5666699999999999999999999999999999
Q ss_pred EEEEEccCCcCC
Q 013840 421 LKVQLKRDNKQN 432 (435)
Q Consensus 421 i~v~~a~~~~~~ 432 (435)
|-|+||-++...
T Consensus 188 VAVDWAV~Kd~y 199 (678)
T KOG0127|consen 188 VAVDWAVDKDTY 199 (678)
T ss_pred eEEeeecccccc
Confidence 999999888653
No 38
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.89 E-value=1.8e-22 Score=160.80 Aligned_cols=168 Identities=25% Similarity=0.412 Sum_probs=141.8
Q ss_pred CccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCce
Q 013840 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (435)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i 89 (435)
+.....||||+||+..++++-|.++|-..|+|.++++.+|+.+...+||||++|.+.|+|.-|++.||.-++ .+++|
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkL---YgrpI 81 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKL---YGRPI 81 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHh---cCcee
Confidence 334567999999999999999999999999999999999999999999999999999999999999985443 44888
Q ss_pred eeeccCchh--ccccceEEEecCCCCCCHHHHHHhhhccCCeeE-EEEecCC-CCCcccEEEEEeCCHHHHHHHHHHHcC
Q 013840 90 QVKYADGEL--ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKD-LQILRGS-QQTSKGCAFLKYETKEQALAALEAING 165 (435)
Q Consensus 90 ~~~~~~~~~--~~~~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~-v~~~~~~-~~~~~g~afV~f~~~e~a~~a~~~l~~ 165 (435)
++..+.... .....++||+||.+++++..|++.|+.||.+.. -+++++. +|.++|++||-|++.|.+.+|+..++|
T Consensus 82 rv~kas~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ng 161 (203)
T KOG0131|consen 82 RVNKASAHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNG 161 (203)
T ss_pred EEEecccccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhcc
Confidence 888776322 222578999999999999999999999998765 3666665 688899999999999999999999999
Q ss_pred CCcCCCCcceEEEEecCC
Q 013840 166 KHKMEGSSVPLVVKWADT 183 (435)
Q Consensus 166 ~~~~~g~~~~l~v~~a~~ 183 (435)
.. +..+. +++.++..
T Consensus 162 q~-l~nr~--itv~ya~k 176 (203)
T KOG0131|consen 162 QY-LCNRP--ITVSYAFK 176 (203)
T ss_pred ch-hcCCc--eEEEEEEe
Confidence 65 66665 55555543
No 39
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.88 E-value=2.3e-21 Score=184.72 Aligned_cols=79 Identities=30% Similarity=0.515 Sum_probs=70.9
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCC---CCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 013840 350 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKA---TGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 426 (435)
Q Consensus 350 ~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~---~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a 426 (435)
++|||+||++.+|.++|..+|...|.|.++.|...+. .-.+.|||||+|.++++|++|++.|+|..|.|+.|.|+++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 4499999999999999999999999999999875542 1245699999999999999999999999999999999999
Q ss_pred cC
Q 013840 427 RD 428 (435)
Q Consensus 427 ~~ 428 (435)
..
T Consensus 596 ~~ 597 (725)
T KOG0110|consen 596 EN 597 (725)
T ss_pred cC
Confidence 83
No 40
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.87 E-value=2.4e-22 Score=171.53 Aligned_cols=152 Identities=28% Similarity=0.548 Sum_probs=134.0
Q ss_pred eEEEecCCCCCCHHHHHHhhhccCCeeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHHcCCCcCCCCcceEEEEecCC
Q 013840 104 KLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADT 183 (435)
Q Consensus 104 ~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~~~~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~a~~ 183 (435)
.+||+|||..+++.+|+.+|+.||+|++|.|+++ |+||..++...++.||..|||-. ++|.. |.|+-+++
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN-------YgFVHiEdktaaedairNLhgYt-Lhg~n--InVeaSks 73 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVKN-------YGFVHIEDKTAAEDAIRNLHGYT-LHGVN--INVEASKS 73 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeecc-------cceEEeecccccHHHHhhcccce-ecceE--EEEEeccc
Confidence 5899999999999999999999999999999865 99999999999999999999976 77765 45544433
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCCCCCCCCCCCCCccCCCCcCccccCCCCCCCCCCccCcCCCCCCCCC
Q 013840 184 EKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNA 263 (435)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (435)
+.
T Consensus 74 Ks------------------------------------------------------------------------------ 75 (346)
T KOG0109|consen 74 KS------------------------------------------------------------------------------ 75 (346)
T ss_pred cC------------------------------------------------------------------------------
Confidence 20
Q ss_pred CcCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCc
Q 013840 264 MRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSGGQ 343 (435)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (435)
T Consensus 76 -------------------------------------------------------------------------------- 75 (346)
T KOG0109|consen 76 -------------------------------------------------------------------------------- 75 (346)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEE
Q 013840 344 IEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKV 423 (435)
Q Consensus 344 ~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v 423 (435)
...++|+|+||.+.++.++|++.|++||+|+.|.|.++ |+||.|...++|..|++.|++..|.|++++|
T Consensus 76 ---k~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~v 144 (346)
T KOG0109|consen 76 ---KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHV 144 (346)
T ss_pred ---CCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccceeee
Confidence 04478999999999999999999999999999999765 8999999999999999999999999999999
Q ss_pred EEccCCcCCCC
Q 013840 424 QLKRDNKQNKP 434 (435)
Q Consensus 424 ~~a~~~~~~~~ 434 (435)
+++.++=.-.|
T Consensus 145 q~stsrlrtap 155 (346)
T KOG0109|consen 145 QLSTSRLRTAP 155 (346)
T ss_pred eeeccccccCC
Confidence 99887654443
No 41
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=6.7e-22 Score=166.63 Aligned_cols=159 Identities=34% Similarity=0.576 Sum_probs=146.7
Q ss_pred ccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCC
Q 013840 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (435)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~ 87 (435)
+.+..+.++|||+-|...-.|+||+.+|..||.|++|.+.+... +.++|||||+|.+.-+|+.||+.||+...+.|-..
T Consensus 13 esrg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d-g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASS 91 (371)
T KOG0146|consen 13 ESRGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD-GNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASS 91 (371)
T ss_pred ccCCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC-CCCCCceEEEeccchHHHHHHHHhcccccCCCCcc
Confidence 33445789999999999999999999999999999999988875 89999999999999999999999999999999999
Q ss_pred ceeeeccCchhcccc-----------------------------------------------------------------
Q 013840 88 PLQVKYADGELERLE----------------------------------------------------------------- 102 (435)
Q Consensus 88 ~i~~~~~~~~~~~~~----------------------------------------------------------------- 102 (435)
.+.+++++.++++..
T Consensus 92 SLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~a 171 (371)
T KOG0146|consen 92 SLVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNA 171 (371)
T ss_pred ceEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhh
Confidence 999999988876630
Q ss_pred --------------------------------------------------------------------------------
Q 013840 103 -------------------------------------------------------------------------------- 102 (435)
Q Consensus 103 -------------------------------------------------------------------------------- 102 (435)
T Consensus 172 ngl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~ 251 (371)
T KOG0146|consen 172 NGLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQ 251 (371)
T ss_pred cccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHH
Confidence
Q ss_pred ----------------------------------ceEEEecCCCCCCHHHHHHhhhccCCeeEEEEecCC-CCCcccEEE
Q 013840 103 ----------------------------------HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAF 147 (435)
Q Consensus 103 ----------------------------------~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~-~~~~~g~af 147 (435)
++|||+.||.+....||.+.|-.||.|.+.+++.|. ++.+++|+|
T Consensus 252 ~Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGF 331 (371)
T KOG0146|consen 252 QYAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGF 331 (371)
T ss_pred HHhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceee
Confidence 789999999999999999999999999999997776 788999999
Q ss_pred EEeCCHHHHHHHHHHHcCCC
Q 013840 148 LKYETKEQALAALEAINGKH 167 (435)
Q Consensus 148 V~f~~~e~a~~a~~~l~~~~ 167 (435)
|.|+++.+|+.||..|||-.
T Consensus 332 VSfDNp~SaQaAIqAMNGFQ 351 (371)
T KOG0146|consen 332 VSFDNPASAQAAIQAMNGFQ 351 (371)
T ss_pred EecCCchhHHHHHHHhcchh
Confidence 99999999999999999976
No 42
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.84 E-value=4.4e-21 Score=163.85 Aligned_cols=145 Identities=24% Similarity=0.509 Sum_probs=129.0
Q ss_pred ceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCceeeecc
Q 013840 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYA 94 (435)
Q Consensus 15 ~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~~~~~ 94 (435)
.+|||+|||..+++.+|+.+|..||.|.+|.|+++ ||||..++...|..||+.||+.++ ++..|.+.-+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtL---hg~nInVeaS 71 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTL---HGVNINVEAS 71 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhccccee---cceEEEEEec
Confidence 47999999999999999999999999999999885 999999999999999999999864 4478888766
Q ss_pred CchhccccceEEEecCCCCCCHHHHHHhhhccCCeeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHHcCCCcCCCCcc
Q 013840 95 DGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSV 174 (435)
Q Consensus 95 ~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~~~~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~ 174 (435)
+.+ .+...+++|+|+.+.++.+||++.|++||+|.+|.+.++ |+||.|.-.++|..|++.|++.. +.|+..
T Consensus 72 ksK-sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd-------y~fvh~d~~eda~~air~l~~~~-~~gk~m 142 (346)
T KOG0109|consen 72 KSK-SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD-------YAFVHFDRAEDAVEAIRGLDNTE-FQGKRM 142 (346)
T ss_pred ccc-CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc-------eeEEEEeeccchHHHHhcccccc-ccccee
Confidence 654 445788999999999999999999999999999999865 99999999999999999999987 888865
Q ss_pred eEEEE
Q 013840 175 PLVVK 179 (435)
Q Consensus 175 ~l~v~ 179 (435)
.+.++
T Consensus 143 ~vq~s 147 (346)
T KOG0109|consen 143 HVQLS 147 (346)
T ss_pred eeeee
Confidence 55444
No 43
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.84 E-value=1.3e-18 Score=155.42 Aligned_cols=275 Identities=21% Similarity=0.299 Sum_probs=192.6
Q ss_pred ceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCcee----
Q 013840 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ---- 90 (435)
Q Consensus 15 ~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~---- 90 (435)
-.+.|.|+-+.++-+-|..+|++||.|..|..+.... .-.|.|+|.+.+.|+.|...|.|+.+..|+ -.++
T Consensus 151 Lr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn----~FQALvQy~d~~sAq~AK~aLdGqnIyngc-CtLrId~S 225 (492)
T KOG1190|consen 151 LRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNN----GFQALVQYTDAVSAQAAKLALDGQNIYNGC-CTLRIDFS 225 (492)
T ss_pred EEEEeccceeeeEHHHHHHHHhhcceeEEEEEEeccc----chhhhhhccchhhHHHHHHhccCCcccCce-eEEEeehh
Confidence 4567899999999999999999999998877665442 226999999999999999999998776663 2333
Q ss_pred ------eeccCchhccc------------------------------------------------------cceEEEecC
Q 013840 91 ------VKYADGELERL------------------------------------------------------EHKLFIGML 110 (435)
Q Consensus 91 ------~~~~~~~~~~~------------------------------------------------------~~~l~v~~l 110 (435)
+++.+.+.++. ...|.|.||
T Consensus 226 klt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnl 305 (492)
T KOG1190|consen 226 KLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNL 305 (492)
T ss_pred hcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecC
Confidence 33322111100 145788888
Q ss_pred CCC-CCHHHHHHhhhccCCeeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHHcCCCcCCCCcceEEEEecCCHHHHHH
Q 013840 111 PKN-VSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQA 189 (435)
Q Consensus 111 p~~-~t~~~l~~~f~~~g~i~~v~~~~~~~~~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~a~~~~~~~~ 189 (435)
... +|.+.|+.+|+-||+|.+|+|+.++ +-.|+|+|.+...|.-|++.|+|.. +.|+. |+|.+.+...-...
T Consensus 306 n~~~VT~d~LftlFgvYGdVqRVkil~nk----kd~ALIQmsd~~qAqLA~~hL~g~~-l~gk~--lrvt~SKH~~vqlp 378 (492)
T KOG1190|consen 306 NEEAVTPDVLFTLFGVYGDVQRVKILYNK----KDNALIQMSDGQQAQLAMEHLEGHK-LYGKK--LRVTLSKHTNVQLP 378 (492)
T ss_pred chhccchhHHHHHHhhhcceEEEEeeecC----CcceeeeecchhHHHHHHHHhhcce-ecCce--EEEeeccCccccCC
Confidence 654 8999999999999999999999875 4689999999999999999999987 55665 67766665421100
Q ss_pred HHHHHHHhhhccCCCCCCCCCCccCCCCCCCCCCCCCCCccCCCCcCccccCCCCCCCCCCccCcCCCCCCCCCCcCCCC
Q 013840 190 RRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASP 269 (435)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (435)
+..+..+..+.
T Consensus 379 ~egq~d~glT~--------------------------------------------------------------------- 389 (492)
T KOG1190|consen 379 REGQEDQGLTK--------------------------------------------------------------------- 389 (492)
T ss_pred CCCCccccccc---------------------------------------------------------------------
Confidence 00000000000
Q ss_pred CCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCcccCCCC
Q 013840 270 DLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSGGQIEGPPG 349 (435)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (435)
.+..++...+..... -.-.-.-+++
T Consensus 390 ----------------dy~~spLhrfkkpgs---------------------------------------KN~~ni~Pps 414 (492)
T KOG1190|consen 390 ----------------DYGNSPLHRFKKPGS---------------------------------------KNYQNIFPPS 414 (492)
T ss_pred ----------------cCCCCchhhccCccc---------------------------------------ccccccCCch
Confidence 000000000000000 0000012366
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCe-EEEEEEccC
Q 013840 350 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGK-KLKVQLKRD 428 (435)
Q Consensus 350 ~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr-~i~v~~a~~ 428 (435)
.++++.|+|..+++|+|++.|..-|-..+..... ++.+-+|.+++.+.|+|..|+..+|...+++. .|+|+|.++
T Consensus 415 atlHlsnip~svsee~lk~~f~~~g~~vkafkff----~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 415 ATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF----QKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred hheeeccCCcccchhHHHHhhhcCCceEEeeeec----CCCcceeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 8999999999999999999999888665554432 22345899999999999999999999999864 999999886
Q ss_pred C
Q 013840 429 N 429 (435)
Q Consensus 429 ~ 429 (435)
.
T Consensus 491 ~ 491 (492)
T KOG1190|consen 491 T 491 (492)
T ss_pred c
Confidence 4
No 44
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.84 E-value=7.5e-20 Score=161.83 Aligned_cols=278 Identities=15% Similarity=0.201 Sum_probs=189.8
Q ss_pred CccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCce
Q 013840 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (435)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i 89 (435)
...++..+..++|||.-++.+|-.||+........+.++....++..|.|.|.|.+.|.-..|++.... ++.+ +.|
T Consensus 56 ~~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkRhkh--h~g~--ryi 131 (508)
T KOG1365|consen 56 SADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKRHKH--HMGT--RYI 131 (508)
T ss_pred ccCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHhhhh--hccC--Cce
Confidence 345667889999999999999999998765555455566666788889999999999999999976432 3333 444
Q ss_pred eeeccCchhc-----------------cccceEEEecCCCCCCHHHHHHhhhcc----CCeeEEEEecCCCCCcccEEEE
Q 013840 90 QVKYADGELE-----------------RLEHKLFIGMLPKNVSEAEVSALFSIY----GTIKDLQILRGSQQTSKGCAFL 148 (435)
Q Consensus 90 ~~~~~~~~~~-----------------~~~~~l~v~~lp~~~t~~~l~~~f~~~----g~i~~v~~~~~~~~~~~g~afV 148 (435)
.+-.+..+.- ...-.|.+++||+++++.+|.++|... |..+.|.+++..+|+..|-|||
T Consensus 132 evYka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFv 211 (508)
T KOG1365|consen 132 EVYKATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFV 211 (508)
T ss_pred eeeccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEE
Confidence 4433322211 113467889999999999999999532 2556788888889999999999
Q ss_pred EeCCHHHHHHHHHHHcCCCcCCCCcceEEEEecCCHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCCCCCCCCCCCCC
Q 013840 149 KYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYG 228 (435)
Q Consensus 149 ~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (435)
.|..+++|..|+.+... .++.+.+.+ |-+...+.+.-. .+.... +...+. ..+..+
T Consensus 212 lfa~ee~aq~aL~khrq--~iGqRYIEl---FRSTaaEvqqvl-nr~~s~-----------pLi~~~-~sp~~p------ 267 (508)
T KOG1365|consen 212 LFACEEDAQFALRKHRQ--NIGQRYIEL---FRSTAAEVQQVL-NREVSE-----------PLIPGL-TSPLLP------ 267 (508)
T ss_pred EecCHHHHHHHHHHHHH--HHhHHHHHH---HHHhHHHHHHHH-Hhhccc-----------cccCCC-CCCCCC------
Confidence 99999999999987443 355443333 222222221111 000000 000000 000000
Q ss_pred ccCCCCcCccccCCCCCCCCCCccCcCCCCCCCCCCcCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013840 229 YQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGM 308 (435)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (435)
+
T Consensus 268 -----------------------------------------------------------------------------~-- 268 (508)
T KOG1365|consen 268 -----------------------------------------------------------------------------G-- 268 (508)
T ss_pred -----------------------------------------------------------------------------C--
Confidence 0
Q ss_pred CCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCcccCCCCceEEEeCCCCCCCHHHHHHHhhcCCc-EEE--EEEEeeC
Q 013840 309 LGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGR-VLS--AKVFVDK 385 (435)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~-v~~--v~i~~~~ 385 (435)
.+.... .......+|.+++||+..|.|||.+||..|-. |.. |++..+
T Consensus 269 --------~p~~~~---------------------p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N- 318 (508)
T KOG1365|consen 269 --------GPARLV---------------------PPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN- 318 (508)
T ss_pred --------CccccC---------------------CCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc-
Confidence 000000 00112468999999999999999999999884 333 777766
Q ss_pred CCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEE
Q 013840 386 ATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 424 (435)
Q Consensus 386 ~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~ 424 (435)
..|++.|.|||+|.+.|+|.+|....|.....+|.|.|.
T Consensus 319 ~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvf 357 (508)
T KOG1365|consen 319 GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVF 357 (508)
T ss_pred CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEe
Confidence 489999999999999999999999988887778888875
No 45
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.83 E-value=5.3e-20 Score=161.79 Aligned_cols=174 Identities=25% Similarity=0.430 Sum_probs=143.5
Q ss_pred ceEEEecCCCCCCHHHHHHhhhccCCeeEEEEecCC-CCCcccEEEEEeCCHHHHHHHHHHHcCCCcCCCCcceEEEEec
Q 013840 103 HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181 (435)
Q Consensus 103 ~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~-~~~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~a 181 (435)
++|||+.+.+.+.++.|+..|..||+|.+|.+.-++ +++.+|||||+|+-+|.|.-|++.|||. +++|+.+ .|...
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~-mlGGRNi--KVgrP 190 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQ-MLGGRNI--KVGRP 190 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccc-cccCccc--cccCC
Confidence 689999999999999999999999999999998776 8889999999999999999999999996 4888874 44322
Q ss_pred CCHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCCCCCCCCCCCCCccCCCCcCccccCCCCCCCCCCccCcCCCCCCC
Q 013840 182 DTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQG 261 (435)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (435)
....+-+.-... -+
T Consensus 191 sNmpQAQpiID~-vq----------------------------------------------------------------- 204 (544)
T KOG0124|consen 191 SNMPQAQPIIDM-VQ----------------------------------------------------------------- 204 (544)
T ss_pred CCCcccchHHHH-HH-----------------------------------------------------------------
Confidence 211000000000 00
Q ss_pred CCCcCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCC
Q 013840 262 NAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSG 341 (435)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (435)
T Consensus 205 -------------------------------------------------------------------------------- 204 (544)
T KOG0124|consen 205 -------------------------------------------------------------------------------- 204 (544)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccCCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEE
Q 013840 342 GQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKL 421 (435)
Q Consensus 342 ~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i 421 (435)
.+...-..|||.-+..+.+++||+..|+.||+|.+|.+.+++..+.++|||||+|.+...-..|+..||-+-|+|..|
T Consensus 205 --eeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyL 282 (544)
T KOG0124|consen 205 --EEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYL 282 (544)
T ss_pred --HHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceE
Confidence 000012579999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred EEEEcc
Q 013840 422 KVQLKR 427 (435)
Q Consensus 422 ~v~~a~ 427 (435)
+|-..-
T Consensus 283 RVGk~v 288 (544)
T KOG0124|consen 283 RVGKCV 288 (544)
T ss_pred eccccc
Confidence 986543
No 46
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.81 E-value=4.5e-19 Score=144.11 Aligned_cols=84 Identities=37% Similarity=0.607 Sum_probs=80.6
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 427 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a~ 427 (435)
.+++|||+|||..+|+++|+++|++||.|.+|.|+.++.+++++|||||+|.++++|++|++.||+..|.|++|+|++++
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCcC
Q 013840 428 DNKQ 431 (435)
Q Consensus 428 ~~~~ 431 (435)
.+..
T Consensus 113 ~~~~ 116 (144)
T PLN03134 113 DRPS 116 (144)
T ss_pred cCCC
Confidence 7764
No 47
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.79 E-value=4.4e-17 Score=154.56 Aligned_cols=160 Identities=11% Similarity=0.063 Sum_probs=115.9
Q ss_pred cCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCceee
Q 013840 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 91 (435)
Q Consensus 12 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~~ 91 (435)
.+.+.+.+++.+++.++.|+++||... .|....+..+...+..+|-++|+|....++++|+..- ...+. .+.+.+
T Consensus 309 ~d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn-~~~~~---~R~~q~ 383 (944)
T KOG4307|consen 309 SDKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTRN-PSDDV---NRPFQT 383 (944)
T ss_pred chhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhcC-chhhh---hcceee
Confidence 567888999999999999999999764 3555666666654555899999999999999998642 11111 133322
Q ss_pred eccCchh----------------------------------------ccccceEEEecCCCCCCHHHHHHhhhccCCeeE
Q 013840 92 KYADGEL----------------------------------------ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKD 131 (435)
Q Consensus 92 ~~~~~~~----------------------------------------~~~~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~ 131 (435)
....... .....+|||..||..+++.++.++|...-.|+.
T Consensus 384 ~P~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved 463 (944)
T KOG4307|consen 384 GPPGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVED 463 (944)
T ss_pred cCCCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhh
Confidence 2211100 001368999999999999999999998888877
Q ss_pred -EEEecCCCCCcccEEEEEeCCHHHHHHHHHHHcCCCcCCCCcceEEEE
Q 013840 132 -LQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (435)
Q Consensus 132 -v~~~~~~~~~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~ 179 (435)
|.+-..++++.++.|||.|..++.+..|...- .++++..+. |.|.
T Consensus 464 ~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~-~k~y~G~r~--irv~ 509 (944)
T KOG4307|consen 464 FIELTRLPTDLLRPAAFVAFIHPTAPLTASSVK-TKFYPGHRI--IRVD 509 (944)
T ss_pred eeEeccCCcccccchhhheeccccccchhhhcc-cccccCceE--EEee
Confidence 78877888888999999999988888887643 345455443 4443
No 48
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.77 E-value=7.7e-19 Score=163.24 Aligned_cols=180 Identities=26% Similarity=0.524 Sum_probs=141.9
Q ss_pred cceEEEecCCCCCCHHHHHHhhhccCCeeEEEEecCC-CCCcccEEEEEeCCHHHHHHHHHHHcCCCcCCCCcceEEEEe
Q 013840 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (435)
Q Consensus 102 ~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~-~~~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~ 180 (435)
.+++|+.-+....+.-+|+++|+.+|+|..|.++.+. +++++|.|||+|.+.+....|+ .|.|.. +.|. +|.|..
T Consensus 179 ~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqr-llg~--pv~vq~ 254 (549)
T KOG0147|consen 179 QRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQR-LLGV--PVIVQL 254 (549)
T ss_pred HHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCc-ccCc--eeEecc
Confidence 5788888888889999999999999999999998886 7889999999999999999998 578866 4443 455543
Q ss_pred cCCHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCCCCCCCCCCCCCccCCCCcCccccCCCCCCCCCCccCcCCCCCC
Q 013840 181 ADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQ 260 (435)
Q Consensus 181 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (435)
....+.+.+. .. ++.. +.+
T Consensus 255 sEaeknr~a~-------~s----------~a~~---~k~----------------------------------------- 273 (549)
T KOG0147|consen 255 SEAEKNRAAN-------AS----------PALQ---GKG----------------------------------------- 273 (549)
T ss_pred cHHHHHHHHh-------cc----------cccc---ccc-----------------------------------------
Confidence 3332222100 00 0000 000
Q ss_pred CCCCcCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCC
Q 013840 261 GNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGS 340 (435)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (435)
T Consensus 274 -------------------------------------------------------------------------------- 273 (549)
T KOG0147|consen 274 -------------------------------------------------------------------------------- 273 (549)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccCCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeE
Q 013840 341 GGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKK 420 (435)
Q Consensus 341 ~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~ 420 (435)
...+-..|||+||.+++|+++|+..|+.||.|..|.+++|.++|+++|||||+|.+.++|++|++.|||+.|.||.
T Consensus 274 ----~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ 349 (549)
T KOG0147|consen 274 ----FTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRL 349 (549)
T ss_pred ----cccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCce
Confidence 0001123999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred EEEEEccCCc
Q 013840 421 LKVQLKRDNK 430 (435)
Q Consensus 421 i~v~~a~~~~ 430 (435)
|+|..-..+-
T Consensus 350 ikV~~v~~r~ 359 (549)
T KOG0147|consen 350 IKVSVVTERV 359 (549)
T ss_pred EEEEEeeeec
Confidence 9998765443
No 49
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.76 E-value=2.2e-18 Score=155.08 Aligned_cols=167 Identities=25% Similarity=0.428 Sum_probs=139.2
Q ss_pred CCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCceeee
Q 013840 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVK 92 (435)
Q Consensus 13 ~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~~~ 92 (435)
+.++|||++|+|+++++.|++.|+.||.|.++.+++|+.+++++||+||+|.+++.+..+|..-. +.+++ +.|..+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~--h~~dg--r~ve~k 80 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNART--HKLDG--RSVEPK 80 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccc--cccCC--ccccce
Confidence 88999999999999999999999999999999999999999999999999999999999987633 34665 566555
Q ss_pred ccCchhccc-------cceEEEecCCCCCCHHHHHHhhhccCCeeEEEEecCC-CCCcccEEEEEeCCHHHHHHHHHHHc
Q 013840 93 YADGELERL-------EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAIN 164 (435)
Q Consensus 93 ~~~~~~~~~-------~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~-~~~~~g~afV~f~~~e~a~~a~~~l~ 164 (435)
.+.++.... ...|||++||.+++++++++.|..||.|..+.++.+. ..+.++|+||.|.+++++.+++..-
T Consensus 81 ~av~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~- 159 (311)
T KOG4205|consen 81 RAVSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQK- 159 (311)
T ss_pred eccCcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccc-
Confidence 554433222 3479999999999999999999999999988887765 7788999999999999999998642
Q ss_pred CCCcCCCCcceEEEEecCCHHHH
Q 013840 165 GKHKMEGSSVPLVVKWADTEKER 187 (435)
Q Consensus 165 ~~~~~~g~~~~l~v~~a~~~~~~ 187 (435)
...+.++. +.|..|.++...
T Consensus 160 -f~~~~gk~--vevkrA~pk~~~ 179 (311)
T KOG4205|consen 160 -FHDFNGKK--VEVKRAIPKEVM 179 (311)
T ss_pred -eeeecCce--eeEeeccchhhc
Confidence 22366665 788888876543
No 50
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.75 E-value=3.5e-18 Score=153.83 Aligned_cols=174 Identities=26% Similarity=0.429 Sum_probs=144.9
Q ss_pred ccceEEEecCCCCCCHHHHHHhhhccCCeeEEEEecCC-CCCcccEEEEEeCCHHHHHHHHHHHcCCCcCCCCcceEEEE
Q 013840 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (435)
Q Consensus 101 ~~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~-~~~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~ 179 (435)
...+++|++|.++++++.|++.|+.||+|.+|.+.+++ +++++||+||+|++.+...+++..-. +.++|+. |...
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~--h~~dgr~--ve~k 80 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNART--HKLDGRS--VEPK 80 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccc--cccCCcc--ccce
Confidence 35689999999999999999999999999999999886 78899999999999999998886533 3478876 4555
Q ss_pred ecCCHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCCCCCCCCCCCCCccCCCCcCccccCCCCCCCCCCccCcCCCCC
Q 013840 180 WADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVN 259 (435)
Q Consensus 180 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (435)
.+.+.......
T Consensus 81 ~av~r~~~~~~--------------------------------------------------------------------- 91 (311)
T KOG4205|consen 81 RAVSREDQTKV--------------------------------------------------------------------- 91 (311)
T ss_pred eccCccccccc---------------------------------------------------------------------
Confidence 45443211000
Q ss_pred CCCCCcCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCC
Q 013840 260 QGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTG 339 (435)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (435)
T Consensus 92 -------------------------------------------------------------------------------- 91 (311)
T KOG4205|consen 92 -------------------------------------------------------------------------------- 91 (311)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcccCCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCe
Q 013840 340 SGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGK 419 (435)
Q Consensus 340 ~~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr 419 (435)
........|||++||.++++++|+++|.+||.|..+.++.|..+.+++||+||.|.+++...+++.. +-..|.|+
T Consensus 92 ----~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~-~f~~~~gk 166 (311)
T KOG4205|consen 92 ----GRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQ-KFHDFNGK 166 (311)
T ss_pred ----ccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceeccc-ceeeecCc
Confidence 0000346899999999999999999999999999999999999999999999999999999998875 78889999
Q ss_pred EEEEEEccCCcCC
Q 013840 420 KLKVQLKRDNKQN 432 (435)
Q Consensus 420 ~i~v~~a~~~~~~ 432 (435)
.+.|..|-.+...
T Consensus 167 ~vevkrA~pk~~~ 179 (311)
T KOG4205|consen 167 KVEVKRAIPKEVM 179 (311)
T ss_pred eeeEeeccchhhc
Confidence 9999999887643
No 51
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.74 E-value=2.7e-15 Score=132.79 Aligned_cols=284 Identities=18% Similarity=0.229 Sum_probs=194.6
Q ss_pred cCccCCceEEEe--cCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCC
Q 013840 9 KSSEERVKLFVG--QVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (435)
Q Consensus 9 ~~~~~~~~l~v~--nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~ 86 (435)
+...++..|.+. |-=+.+|.+-|..++...|+|..|.|++... -.|+|+|++.+.|++|...|||..+..|+
T Consensus 115 es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkng-----VQAmVEFdsv~~AqrAk~alNGADIYsGC- 188 (494)
T KOG1456|consen 115 ESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNG-----VQAMVEFDSVEVAQRAKAALNGADIYSGC- 188 (494)
T ss_pred CCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccc-----eeeEEeechhHHHHHHHhhcccccccccc-
Confidence 334444445444 4446789999999999999999988877642 38999999999999999999999988876
Q ss_pred CceeeeccCchhccc-----------------------------------------------------------------
Q 013840 87 SPLQVKYADGELERL----------------------------------------------------------------- 101 (435)
Q Consensus 87 ~~i~~~~~~~~~~~~----------------------------------------------------------------- 101 (435)
-++++.++++....-
T Consensus 189 CTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~ 268 (494)
T KOG1456|consen 189 CTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRY 268 (494)
T ss_pred eeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCC
Confidence 566666665433110
Q ss_pred ------------------cceEEEecCCCC-CCHHHHHHhhhccCCeeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHH
Q 013840 102 ------------------EHKLFIGMLPKN-VSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEA 162 (435)
Q Consensus 102 ------------------~~~l~v~~lp~~-~t~~~l~~~f~~~g~i~~v~~~~~~~~~~~g~afV~f~~~e~a~~a~~~ 162 (435)
...+.|.+|... ++-+.|..+|+.||.|++|++++.+ .|.|.|++.+....++|+..
T Consensus 269 ~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk----~gtamVemgd~~aver~v~h 344 (494)
T KOG1456|consen 269 RDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK----PGTAMVEMGDAYAVERAVTH 344 (494)
T ss_pred ccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc----cceeEEEcCcHHHHHHHHHH
Confidence 146889999765 6778899999999999999999875 57899999999999999999
Q ss_pred HcCCCcCCCCcceEEEEecCCHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCCCCCCCCCCCCCccCCCCcCccccCC
Q 013840 163 INGKHKMEGSSVPLVVKWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRL 242 (435)
Q Consensus 163 l~~~~~~~g~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (435)
||+..+ .|.+ |.+.+..... ... ...+ +-+..-+.+.-|...-.+.+.
T Consensus 345 Lnn~~l-fG~k--l~v~~SkQ~~--v~~-------------------~~pf--lLpDgSpSfKdys~SkNnRFs------ 392 (494)
T KOG1456|consen 345 LNNIPL-FGGK--LNVCVSKQNF--VSP-------------------VQPF--LLPDGSPSFKDYSGSKNNRFS------ 392 (494)
T ss_pred hccCcc-ccce--EEEeeccccc--ccc-------------------CCce--ecCCCCcchhhcccccccccC------
Confidence 999875 5554 4443332210 000 0000 000000000000000000000
Q ss_pred CCCCCCCCccCcCCCCCCCCCCcCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013840 243 PPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVS 322 (435)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (435)
+
T Consensus 393 --------------------------------------------------------------------------s----- 393 (494)
T KOG1456|consen 393 --------------------------------------------------------------------------S----- 393 (494)
T ss_pred --------------------------------------------------------------------------C-----
Confidence 0
Q ss_pred CccCCCCCCCCCCCCCCCCCcccCCCCceEEEeCCCCCCCHHHHHHHhhcCCc-EEEEEEEeeCCCCCcceEEEEEeCCH
Q 013840 323 PAVANSNPSTSSSGGTGSGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGR-VLSAKVFVDKATGVSKCFGFVSYESP 401 (435)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~-v~~v~i~~~~~~g~~~g~afV~F~~~ 401 (435)
...+......+++++|..-|.|..+||+.|.++|..-+. .++|+|...+ +-++ .-|.++|++.
T Consensus 394 --------------p~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svkvFp~k-serS-ssGllEfe~~ 457 (494)
T KOG1456|consen 394 --------------PEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKVFPLK-SERS-SSGLLEFENK 457 (494)
T ss_pred --------------hhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEEeeccc-cccc-ccceeeeehH
Confidence 000011123447789999999999999999999977664 5788887765 3333 3589999999
Q ss_pred HHHHHHHHhcCCceeCCe------EEEEEEccCC
Q 013840 402 ASAQNAIAMMNGCQLGGK------KLKVQLKRDN 429 (435)
Q Consensus 402 ~~A~~A~~~l~g~~l~gr------~i~v~~a~~~ 429 (435)
++|..|+..+|...+.+. .|++.|+.++
T Consensus 458 s~Aveal~~~NH~pi~~p~gs~PfilKlcfsts~ 491 (494)
T KOG1456|consen 458 SDAVEALMKLNHYPIEGPNGSFPFILKLCFSTSK 491 (494)
T ss_pred HHHHHHHHHhccccccCCCCCCCeeeeeeecccc
Confidence 999999999999998763 5666666554
No 52
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.72 E-value=7.5e-16 Score=135.31 Aligned_cols=190 Identities=19% Similarity=0.325 Sum_probs=139.7
Q ss_pred cceEEEecCCCCCCHHHHHHhhhccCCee--------EEEEecCCCCCcccEEEEEeCCHHHHHHHHHHHcCCCcCCCCc
Q 013840 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIK--------DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSS 173 (435)
Q Consensus 102 ~~~l~v~~lp~~~t~~~l~~~f~~~g~i~--------~v~~~~~~~~~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~ 173 (435)
...|||.|||.++|.+++.++|+++|.|. .|++++++.|..+|-|+|.|-..|+..-|++.|++.. +.|+.
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~-~rg~~ 212 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDE-LRGKK 212 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCccc-ccCcE
Confidence 45699999999999999999999999875 5899999999999999999999999999999999976 77776
Q ss_pred ceEEEEecCCHHHH----------HHHHHHHHHh-hhccCCCCCCCCCCccCCCCCCCCCCCCCCCccCCCCcCccccCC
Q 013840 174 VPLVVKWADTEKER----------QARRAQKAQS-QANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRL 242 (435)
Q Consensus 174 ~~l~v~~a~~~~~~----------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (435)
|.|..|.-+... ...+.++.+. +.......
T Consensus 213 --~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~------------------------------------- 253 (382)
T KOG1548|consen 213 --LRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWR------------------------------------- 253 (382)
T ss_pred --EEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccC-------------------------------------
Confidence 677666433211 0001111111 11100000
Q ss_pred CCCCCCCCccCcCCCCCCCCCCcCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013840 243 PPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVS 322 (435)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (435)
+-
T Consensus 254 ----------------------------------------------------------------------pd-------- 255 (382)
T KOG1548|consen 254 ----------------------------------------------------------------------PD-------- 255 (382)
T ss_pred ----------------------------------------------------------------------CC--------
Confidence 00
Q ss_pred CccCCCCCCCCCCCCCCCCCcccCCCCceEEEeCC--CC--CCC-------HHHHHHHhhcCCcEEEEEEEeeCCCCCcc
Q 013840 323 PAVANSNPSTSSSGGTGSGGQIEGPPGANLFIYHI--PQ--EFG-------DQELGNAFQAFGRVLSAKVFVDKATGVSK 391 (435)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~nL--p~--~~t-------~~~L~~~F~~fG~v~~v~i~~~~~~g~~~ 391 (435)
..........++|.++|+ |. ..+ .++|++-+++||.|.+|.|.- ..+.
T Consensus 256 -----------------~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d----~hPd 314 (382)
T KOG1548|consen 256 -----------------RDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYD----RHPD 314 (382)
T ss_pred -----------------ccccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEec----cCCC
Confidence 000011125689999999 32 223 468888899999999999863 3357
Q ss_pred eEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEccCCc
Q 013840 392 CFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRDNK 430 (435)
Q Consensus 392 g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a~~~~ 430 (435)
|.+.|.|.++++|..|++.|+|++|+||+|..++...+.
T Consensus 315 GvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t 353 (382)
T KOG1548|consen 315 GVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKT 353 (382)
T ss_pred ceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCcc
Confidence 899999999999999999999999999999988765543
No 53
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.71 E-value=1.5e-16 Score=150.20 Aligned_cols=268 Identities=22% Similarity=0.378 Sum_probs=181.7
Q ss_pred ccCCceEEEecCCCCCCHHHHHHHHhcc-----------C-ceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcC
Q 013840 11 SEERVKLFVGQVPKHMTEAQLLAMFKEF-----------A-LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHN 78 (435)
Q Consensus 11 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~-----------g-~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~ 78 (435)
....+.++++++|+.++++.+..+|..- | .+..+.+ ...+.+||++|.+.++|..|+.. .+
T Consensus 172 t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~------n~~~nfa~ie~~s~~~at~~~~~-~~ 244 (500)
T KOG0120|consen 172 TRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQL------NLEKNFAFIEFRSISEATEAMAL-DG 244 (500)
T ss_pred hhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeee------cccccceeEEecCCCchhhhhcc-cc
Confidence 3456789999999999999999999763 2 2444444 23344999999999999999743 23
Q ss_pred CCcCCCCCCceeee------------------------ccCchhccccceEEEecCCCCCCHHHHHHhhhccCCeeEEEE
Q 013840 79 KKTLPGASSPLQVK------------------------YADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQI 134 (435)
Q Consensus 79 ~~~~~~~~~~i~~~------------------------~~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~ 134 (435)
. ++.| .++++. +...........+++++||...++.+++++...||++....+
T Consensus 245 ~-~f~g--~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~l 321 (500)
T KOG0120|consen 245 I-IFEG--RPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRL 321 (500)
T ss_pred h-hhCC--CCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhhee
Confidence 2 2222 222211 111111122467999999999999999999999999999988
Q ss_pred ecCC-CCCcccEEEEEeCCHHHHHHHHHHHcCCCcCCCCcceEEEEecCCHHHHHHHHHHHHHhhhccCCCCCCCCCCcc
Q 013840 135 LRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQARRAQKAQSQANNLPNADSQHPSLF 213 (435)
Q Consensus 135 ~~~~-~~~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (435)
+.+. +|.++||||.+|-+......|+..|||.. +.+.. +.+..+......... .. +
T Consensus 322 v~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~-lgd~~--lvvq~A~~g~~~~~~-------~~---~---------- 378 (500)
T KOG0120|consen 322 VKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQ-LGDKK--LVVQRAIVGASNANV-------NF---N---------- 378 (500)
T ss_pred ecccccccccceeeeeeeCCcchhhhhcccchhh-hcCce--eEeehhhccchhccc-------cC---C----------
Confidence 8875 68899999999999999999999999987 44444 555555443211000 00 0
Q ss_pred CCCCCCCCCCCCCCCccCCCCcCccccCCCCCCCCCCccCcCCCCCCCCCCcCCCCCCCCCCCCCccCCCCCCCCCCCCC
Q 013840 214 GALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYP 293 (435)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (435)
+....++
T Consensus 379 --~~~~~~~----------------------------------------------------------------------- 385 (500)
T KOG0120|consen 379 --ISQSQVP----------------------------------------------------------------------- 385 (500)
T ss_pred --ccccccc-----------------------------------------------------------------------
Confidence 0000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCcccCCCCceEEEeCC--CCCCCH--------
Q 013840 294 AVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSGGQIEGPPGANLFIYHI--PQEFGD-------- 363 (435)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~nL--p~~~t~-------- 363 (435)
+.+. ...+..+.+..+|.+.|+ |.+..+
T Consensus 386 ---~i~~---------------------------------------~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIl 423 (500)
T KOG0120|consen 386 ---GIPL---------------------------------------LMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEIL 423 (500)
T ss_pred ---cchh---------------------------------------hhcccCCCcchhhhhhhcCCHHHhcchHHHHHHH
Confidence 0000 000011224456666666 222211
Q ss_pred HHHHHHhhcCCcEEEEEEEee-CC--CCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 013840 364 QELGNAFQAFGRVLSAKVFVD-KA--TGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 426 (435)
Q Consensus 364 ~~L~~~F~~fG~v~~v~i~~~-~~--~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a 426 (435)
|+++.-|++||.|.+|.|+++ .. -.-..|-.||+|++.+++++|+++|+|++|.||.|..+|-
T Consensus 424 Edvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYy 489 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYY 489 (500)
T ss_pred HHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEec
Confidence 578888999999999999877 21 2344667899999999999999999999999999998863
No 54
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.70 E-value=6.7e-16 Score=127.32 Aligned_cols=85 Identities=25% Similarity=0.368 Sum_probs=69.0
Q ss_pred cceEEEecCCCCCCHHHHHHhhhccCCeeEEEEec-CC-CCCcccEEEEEeCCHHHHHHHHHHHcCCCcCCCCcceEEEE
Q 013840 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILR-GS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (435)
Q Consensus 102 ~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~-~~-~~~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~ 179 (435)
-++|||.+||.++...||+.+|+.|-..+...+.. ++ ....+-+|||.|.+..+|..|++.|||..+--.+...|.+.
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE 113 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE 113 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence 57999999999999999999999998777776643 33 23356899999999999999999999987555555567888
Q ss_pred ecCCHHH
Q 013840 180 WADTEKE 186 (435)
Q Consensus 180 ~a~~~~~ 186 (435)
++++..+
T Consensus 114 lAKSNtK 120 (284)
T KOG1457|consen 114 LAKSNTK 120 (284)
T ss_pred ehhcCcc
Confidence 8877643
No 55
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.70 E-value=1.1e-15 Score=127.53 Aligned_cols=206 Identities=22% Similarity=0.396 Sum_probs=141.7
Q ss_pred ceEEEecCCCCCCHHHHHH----hhhccCCeeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHHcCCCcCCCCcceEEE
Q 013840 103 HKLFIGMLPKNVSEAEVSA----LFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (435)
Q Consensus 103 ~~l~v~~lp~~~t~~~l~~----~f~~~g~i~~v~~~~~~~~~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v 178 (435)
.+|||.||+..+..++|+. +|+.||.|..|...+. .+.+|.|||.|++.+.|..|+..|+|-.+ -|. ++.+
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt--~KmRGQA~VvFk~~~~As~A~r~l~gfpF-ygK--~mri 84 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKT--PKMRGQAFVVFKETEAASAALRALQGFPF-YGK--PMRI 84 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCC--CCccCceEEEecChhHHHHHHHHhcCCcc-cCc--hhhe
Confidence 4899999999999999887 9999999999988765 34689999999999999999999999764 444 3888
Q ss_pred EecCCHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCCCCCCCCCCCCCccCCCCcCccccCCCCCCCCCCccCcCCCC
Q 013840 179 KWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPV 258 (435)
Q Consensus 179 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (435)
.+|..+..-..+..-.........+.. .....+
T Consensus 85 qyA~s~sdii~~~~~~~v~~~~k~~~~-------------------------~~~~~~---------------------- 117 (221)
T KOG4206|consen 85 QYAKSDSDIIAQAPGTFVEKEKKINGE-------------------------ILARIK---------------------- 117 (221)
T ss_pred ecccCccchhhccCceeccccCccccc-------------------------cccccC----------------------
Confidence 888887654433110000000000000 000000
Q ss_pred CCCCCCcCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCC
Q 013840 259 NQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGT 338 (435)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (435)
++....+..+. ++.+..+ ++.
T Consensus 118 ------------------------~~~~~ng~~~~-~~~~~~p---------------------~p~------------- 138 (221)
T KOG4206|consen 118 ------------------------QPLDTNGHFYN-MNRMNLP---------------------PPF------------- 138 (221)
T ss_pred ------------------------Ccccccccccc-cccccCC---------------------CCc-------------
Confidence 00000000000 0000000 000
Q ss_pred CCCCcccCCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeC-
Q 013840 339 GSGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLG- 417 (435)
Q Consensus 339 ~~~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~- 417 (435)
. ....++..++++.|||.+++.+.|..+|..|+....|+++... .+.|||+|.+...|..|...++|+.+.
T Consensus 139 --~-~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~ 210 (221)
T KOG4206|consen 139 --L-AQMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITK 210 (221)
T ss_pred --c-ccCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceecc
Confidence 0 0122366899999999999999999999999999999988764 579999999999999999999999987
Q ss_pred CeEEEEEEcc
Q 013840 418 GKKLKVQLKR 427 (435)
Q Consensus 418 gr~i~v~~a~ 427 (435)
...|+|.+++
T Consensus 211 ~~~m~i~~a~ 220 (221)
T KOG4206|consen 211 KNTMQITFAK 220 (221)
T ss_pred CceEEecccC
Confidence 8899998875
No 56
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=9.2e-17 Score=134.46 Aligned_cols=83 Identities=29% Similarity=0.488 Sum_probs=80.4
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 427 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a~ 427 (435)
+.++|.|.||+.++++++|.++|..||.|.+|.|.+|+++|.++|||||.|.++++|++|+..|||+-+..-.|+|.|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCc
Q 013840 428 DNK 430 (435)
Q Consensus 428 ~~~ 430 (435)
++.
T Consensus 268 P~~ 270 (270)
T KOG0122|consen 268 PSN 270 (270)
T ss_pred CCC
Confidence 763
No 57
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.69 E-value=2.6e-16 Score=112.57 Aligned_cols=70 Identities=33% Similarity=0.690 Sum_probs=67.5
Q ss_pred EEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEE
Q 013840 352 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLK 422 (435)
Q Consensus 352 v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~ 422 (435)
|||+|||.++|+++|+++|+.||.|..+.+..+ .++.++|+|||+|.+.++|.+|++.|||..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999988 5899999999999999999999999999999999986
No 58
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.69 E-value=4.2e-16 Score=143.27 Aligned_cols=77 Identities=18% Similarity=0.239 Sum_probs=66.1
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEE-EEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAK-VFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 426 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~-i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a 426 (435)
...+|.+++||+.||++||.+||+..-.|.... ++.+ ..++++|.|||+|++.+.|+.|+.. |...++-|-|.|..+
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d-~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD-QRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRS 179 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeecc-CCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehh
Confidence 346899999999999999999999886665533 4455 4899999999999999999999997 889999999998754
No 59
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.68 E-value=1e-14 Score=131.73 Aligned_cols=240 Identities=23% Similarity=0.340 Sum_probs=150.3
Q ss_pred cceEEEecCCCCCCHHHHHHhhh-ccCCeeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHHcCCCcCCCCcceEEEEe
Q 013840 102 EHKLFIGMLPKNVSEAEVSALFS-IYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (435)
Q Consensus 102 ~~~l~v~~lp~~~t~~~l~~~f~-~~g~i~~v~~~~~~~~~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~ 180 (435)
.+.+||+|||++..|++|+++|. +.|+|+.|+++.+..|+++|+|.|+|+++|.+++|++.||... +.|+. |.|+-
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~-~~GR~--l~vKE 120 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYE-VNGRE--LVVKE 120 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhcc-ccCce--EEEec
Confidence 46699999999999999999996 7789999999999999999999999999999999999999865 88886 55554
Q ss_pred cCCHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCCCCCCCC---CCCCCccCC-CCcCccccCCCCCC------CCCC
Q 013840 181 ADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPP---YNGYGYQAS-GSYGLMQYRLPPMQ------NQPG 250 (435)
Q Consensus 181 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~------~~~~ 250 (435)
....+ +.+..+-.. ..+.++... ..+..+..- +..+-.--+..... -...
T Consensus 121 d~d~q-----~~~~~~~~r---------------~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~ 180 (608)
T KOG4212|consen 121 DHDEQ-----RDQYGRIVR---------------DGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNN 180 (608)
T ss_pred cCchh-----hhhhhheee---------------ccCcccccCcceecccccccccCCCCccccCCCCcccccccccccC
Confidence 33321 111111000 000011000 000000000 00000000000000 0000
Q ss_pred ccCcCCCCCCCCCCcCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCC
Q 013840 251 FHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNP 330 (435)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (435)
+..+.+.-. ..+.+.-+. + ...+.-.
T Consensus 181 t~t~~~~~~----------------------------~~~~~~lfg-l--~~~Flr~----------------------- 206 (608)
T KOG4212|consen 181 TNTMSNDYN----------------------------NSSNYNLFG-L--SASFLRS----------------------- 206 (608)
T ss_pred ccccccccc----------------------------cchhhhccc-c--hhhhhhh-----------------------
Confidence 000000000 000000000 0 0000000
Q ss_pred CCCCCCCCCCCCcccCCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHh
Q 013840 331 STSSSGGTGSGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410 (435)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 410 (435)
-....+|....+||.||.+.+....|++.|.-.|+|.+|.+-.|+ .|.++|++.|+|.++-+|-.|+..
T Consensus 207 ----------~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idK-eG~s~G~~vi~y~hpveavqaIsm 275 (608)
T KOG4212|consen 207 ----------LHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDK-EGNSRGFAVIEYDHPVEAVQAISM 275 (608)
T ss_pred ----------ccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeecc-ccccCCeeEEEecchHHHHHHHHh
Confidence 000122345679999999999999999999999999999999897 689999999999999999999999
Q ss_pred cCCceeCCeEEEEEEccCC
Q 013840 411 MNGCQLGGKKLKVQLKRDN 429 (435)
Q Consensus 411 l~g~~l~gr~i~v~~a~~~ 429 (435)
+++.-+.+++..+.+.+.-
T Consensus 276 l~~~g~~~~~~~~Rl~~~~ 294 (608)
T KOG4212|consen 276 LDRQGLFDRRMTVRLDRIP 294 (608)
T ss_pred hccCCCccccceeeccccc
Confidence 9998888898888875543
No 60
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.67 E-value=1.2e-15 Score=122.18 Aligned_cols=145 Identities=18% Similarity=0.348 Sum_probs=118.1
Q ss_pred ccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCcee
Q 013840 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (435)
Q Consensus 11 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~ 90 (435)
...++.|||+|||.++-+.+|.++|.+||.|..|.+.... ...+||||+|+++-+|..||..-++.. ++| ..++
T Consensus 3 gr~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYd-ydg--~rLR 76 (241)
T KOG0105|consen 3 GRNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYD-YDG--CRLR 76 (241)
T ss_pred CcccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccc-cCc--ceEE
Confidence 4578999999999999999999999999999998875433 355799999999999999998777764 444 5555
Q ss_pred eeccCch---------------------------hccccceEEEecCCCCCCHHHHHHhhhccCCeeEEEEecCCCCCcc
Q 013840 91 VKYADGE---------------------------LERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSK 143 (435)
Q Consensus 91 ~~~~~~~---------------------------~~~~~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~~~~~~ 143 (435)
+.++..- ....+..|.|++||.+.+|++|+++..+.|.|--..+.++
T Consensus 77 VEfprggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD------ 150 (241)
T KOG0105|consen 77 VEFPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD------ 150 (241)
T ss_pred EEeccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc------
Confidence 5554221 1112457999999999999999999999999877777665
Q ss_pred cEEEEEeCCHHHHHHHHHHHcCCC
Q 013840 144 GCAFLKYETKEQALAALEAINGKH 167 (435)
Q Consensus 144 g~afV~f~~~e~a~~a~~~l~~~~ 167 (435)
|++.|+|...||.+.|+..|....
T Consensus 151 g~GvV~~~r~eDMkYAvr~ld~~~ 174 (241)
T KOG0105|consen 151 GVGVVEYLRKEDMKYAVRKLDDQK 174 (241)
T ss_pred cceeeeeeehhhHHHHHHhhcccc
Confidence 488999999999999999988654
No 61
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.66 E-value=1.1e-15 Score=133.29 Aligned_cols=80 Identities=34% Similarity=0.581 Sum_probs=74.5
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 427 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a~ 427 (435)
....|+|+|||+..-+-||+..|.+||+|.+|.|+.+ ..-+||||||.|++++||.+|.++|||..+.||+|+|..|.
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN--ERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN--ERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEec--cCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 4589999999999999999999999999999999987 45689999999999999999999999999999999999875
Q ss_pred CC
Q 013840 428 DN 429 (435)
Q Consensus 428 ~~ 429 (435)
.+
T Consensus 173 ar 174 (376)
T KOG0125|consen 173 AR 174 (376)
T ss_pred hh
Confidence 43
No 62
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.64 E-value=9.5e-15 Score=116.99 Aligned_cols=180 Identities=21% Similarity=0.362 Sum_probs=128.5
Q ss_pred ccceEEEecCCCCCCHHHHHHhhhccCCeeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHHcCCCcCCCCcceEEEEe
Q 013840 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (435)
Q Consensus 101 ~~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~~~~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~ 180 (435)
.+++|+|+|||.++.+.+|.++|.+||.|..|.+....- ...||||+|+++-||+.||.--+|-. ++|+. |.|.+
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g--~ppfafVeFEd~RDAeDAiygRdGYd-ydg~r--LRVEf 79 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPG--PPPFAFVEFEDPRDAEDAIYGRDGYD-YDGCR--LRVEF 79 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCC--CCCeeEEEecCccchhhhhhcccccc-cCcce--EEEEe
Confidence 357899999999999999999999999999998854421 35799999999999999999888866 88876 77776
Q ss_pred cCCHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCCCCCCCCCCCCCccCCCCcCccccCCCCCCCCCCccCcCCCCCC
Q 013840 181 ADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQ 260 (435)
Q Consensus 181 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (435)
+..-...... -.++.....+.-+.
T Consensus 80 prggr~s~~~---------------------------------~G~y~gggrgGgg~----------------------- 103 (241)
T KOG0105|consen 80 PRGGRSSSDR---------------------------------RGSYSGGGRGGGGG----------------------- 103 (241)
T ss_pred ccCCCccccc---------------------------------ccccCCCCCCCCCC-----------------------
Confidence 6442100000 00000000000000
Q ss_pred CCCCcCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCC
Q 013840 261 GNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGS 340 (435)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (435)
...
T Consensus 104 -----------------------------------------------------------------------------gg~ 106 (241)
T KOG0105|consen 104 -----------------------------------------------------------------------------GGR 106 (241)
T ss_pred -----------------------------------------------------------------------------Ccc
Confidence 000
Q ss_pred CCcccCCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeC--C
Q 013840 341 GGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLG--G 418 (435)
Q Consensus 341 ~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~--g 418 (435)
-..........|.|++||..-+|+||+++..+-|.|-...+.+| |.++|+|..-|+-..|+..|...++. |
T Consensus 107 rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~seG 179 (241)
T KOG0105|consen 107 RGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFRSEG 179 (241)
T ss_pred cCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhccccccCcC
Confidence 00011124478999999999999999999999999999999877 48999999999999999999877654 4
Q ss_pred eEEEEEE
Q 013840 419 KKLKVQL 425 (435)
Q Consensus 419 r~i~v~~ 425 (435)
-...+.+
T Consensus 180 e~~yirv 186 (241)
T KOG0105|consen 180 ETAYIRV 186 (241)
T ss_pred cEeeEEe
Confidence 4444433
No 63
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.64 E-value=1.3e-15 Score=123.92 Aligned_cols=84 Identities=29% Similarity=0.385 Sum_probs=76.0
Q ss_pred ccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCcee
Q 013840 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (435)
Q Consensus 11 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~ 90 (435)
...+++|||+|||+++|+++|+++|++||.|.+++++.|+.+++++|||||+|.+.++|+.||+.|++.. +.+ +.|+
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~-i~G--r~l~ 107 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKE-LNG--RHIR 107 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCE-ECC--EEEE
Confidence 3457799999999999999999999999999999999999999999999999999999999999999875 444 8888
Q ss_pred eeccCch
Q 013840 91 VKYADGE 97 (435)
Q Consensus 91 ~~~~~~~ 97 (435)
+.++..+
T Consensus 108 V~~a~~~ 114 (144)
T PLN03134 108 VNPANDR 114 (144)
T ss_pred EEeCCcC
Confidence 8887654
No 64
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.64 E-value=2.2e-15 Score=107.55 Aligned_cols=70 Identities=31% Similarity=0.657 Sum_probs=65.2
Q ss_pred EEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEE
Q 013840 352 LFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLK 422 (435)
Q Consensus 352 v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~ 422 (435)
|+|+|||..+|+++|+++|+.||.|..+.+..++. |.++|+|||+|.++++|.+|+..+++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999875 99999999999999999999999999999999985
No 65
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.62 E-value=3.8e-15 Score=132.30 Aligned_cols=167 Identities=16% Similarity=0.240 Sum_probs=121.7
Q ss_pred CCceEEEecCCCCCCHHHHHHHHhc---cC-ceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCc
Q 013840 13 ERVKLFVGQVPKHMTEAQLLAMFKE---FA-LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (435)
Q Consensus 13 ~~~~l~v~nLp~~~t~~~l~~~f~~---~g-~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~ 88 (435)
+...|.+++||++||+.+|.+||.. .+ -.+.|.++... .++.+|-|||.|..+++|+.||.+..+. ++. |.
T Consensus 160 ~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~khrq~--iGq--RY 234 (508)
T KOG1365|consen 160 NQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRKHRQN--IGQ--RY 234 (508)
T ss_pred cceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHHHHHH--HhH--HH
Confidence 3467999999999999999999952 22 33445555544 5999999999999999999999864321 221 22
Q ss_pred eeeeccCc--------------------------------hhccccceEEEecCCCCCCHHHHHHhhhccCC-ee--EEE
Q 013840 89 LQVKYADG--------------------------------ELERLEHKLFIGMLPKNVSEAEVSALFSIYGT-IK--DLQ 133 (435)
Q Consensus 89 i~~~~~~~--------------------------------~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~g~-i~--~v~ 133 (435)
|.+..+.. ...+...||.+++||+..+.|+|.++|..|.. |. .|+
T Consensus 235 IElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVH 314 (508)
T KOG1365|consen 235 IELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVH 314 (508)
T ss_pred HHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeE
Confidence 22211110 00111568999999999999999999999974 33 489
Q ss_pred EecCCCCCcccEEEEEeCCHHHHHHHHHHHcCCCcCCCCcceEEEEecCCHHHHH
Q 013840 134 ILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQ 188 (435)
Q Consensus 134 ~~~~~~~~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~a~~~~~~~ 188 (435)
|..+..|++.|.|||+|.+.|+|..|..+.+.+. ..++. |.| +..+-.+..
T Consensus 315 mv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~-mk~RY--iEv-fp~S~eeln 365 (508)
T KOG1365|consen 315 MVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKL-MKSRY--IEV-FPCSVEELN 365 (508)
T ss_pred EEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhh-cccce--EEE-eeccHHHHH
Confidence 9999999999999999999999999999888765 44443 444 445544443
No 66
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.62 E-value=2e-14 Score=120.02 Aligned_cols=158 Identities=21% Similarity=0.413 Sum_probs=126.3
Q ss_pred cCCceEEEecCCCCCCHHHHHH----HHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCC
Q 013840 12 EERVKLFVGQVPKHMTEAQLLA----MFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (435)
Q Consensus 12 ~~~~~l~v~nLp~~~t~~~l~~----~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~ 87 (435)
.++.||||.||+.....++|+. +|+.||.|.+|...+ +.+.+|.|||.|.+.+.|..|++.|+|..+++ +
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFyg---K 80 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYG---K 80 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccC---c
Confidence 3444999999999999999998 999999998877655 57799999999999999999999999976543 5
Q ss_pred ceeeeccCchhc---------------------------------------------------cccceEEEecCCCCCCH
Q 013840 88 PLQVKYADGELE---------------------------------------------------RLEHKLFIGMLPKNVSE 116 (435)
Q Consensus 88 ~i~~~~~~~~~~---------------------------------------------------~~~~~l~v~~lp~~~t~ 116 (435)
++++.|+..+.. ....++++.|||..++.
T Consensus 81 ~mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~ 160 (221)
T KOG4206|consen 81 PMRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESES 160 (221)
T ss_pred hhheecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhH
Confidence 555555422111 11357899999999999
Q ss_pred HHHHHhhhccCCeeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHHcCCCcCCCCcceEEEEec
Q 013840 117 AEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181 (435)
Q Consensus 117 ~~l~~~f~~~g~i~~v~~~~~~~~~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~a 181 (435)
+.+..+|+.|.-..+++++... ++.|||+|.+...|..|...+.+..+-. .-.+.+.++
T Consensus 161 e~l~~lf~qf~g~keir~i~~~----~~iAfve~~~d~~a~~a~~~lq~~~it~--~~~m~i~~a 219 (221)
T KOG4206|consen 161 EMLSDLFEQFPGFKEIRLIPPR----SGIAFVEFLSDRQASAAQQALQGFKITK--KNTMQITFA 219 (221)
T ss_pred HHHHHHHhhCcccceeEeccCC----CceeEEecchhhhhHHHhhhhccceecc--CceEEeccc
Confidence 9999999999999999998763 6799999999999999999888866322 223555544
No 67
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.61 E-value=2.6e-15 Score=119.47 Aligned_cols=79 Identities=23% Similarity=0.477 Sum_probs=74.0
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 427 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a~ 427 (435)
..+.|||+||+..+++.||...|..||.|.+|+|...+ .|||||+|+++.||..|+..|+|..|.|.+|+|++..
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 56899999999999999999999999999999998764 7999999999999999999999999999999999987
Q ss_pred CCcC
Q 013840 428 DNKQ 431 (435)
Q Consensus 428 ~~~~ 431 (435)
.+..
T Consensus 84 G~~r 87 (195)
T KOG0107|consen 84 GRPR 87 (195)
T ss_pred CCcc
Confidence 7655
No 68
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.60 E-value=2e-15 Score=113.40 Aligned_cols=81 Identities=15% Similarity=0.307 Sum_probs=76.9
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 427 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a~ 427 (435)
.++||||+||++.+|||+|.++|++.|+|..|.+-.|+.+-.+=|||||+|.++++|..|++.++|..|..+.|+++|.-
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 67999999999999999999999999999999998898888899999999999999999999999999999999999864
Q ss_pred C
Q 013840 428 D 428 (435)
Q Consensus 428 ~ 428 (435)
.
T Consensus 115 G 115 (153)
T KOG0121|consen 115 G 115 (153)
T ss_pred c
Confidence 3
No 69
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.60 E-value=2.6e-15 Score=125.50 Aligned_cols=80 Identities=28% Similarity=0.417 Sum_probs=74.9
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEccC
Q 013840 349 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRD 428 (435)
Q Consensus 349 ~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a~~ 428 (435)
-+.|||+||+..++.|+|+++|++||+|+.+.|+.|+.+|+++|||||.|++.+.|.+|++. -.-.|+||+..|.+|--
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhhh
Confidence 48999999999999999999999999999999999999999999999999999999999998 46788999999998765
Q ss_pred C
Q 013840 429 N 429 (435)
Q Consensus 429 ~ 429 (435)
.
T Consensus 91 g 91 (247)
T KOG0149|consen 91 G 91 (247)
T ss_pred c
Confidence 3
No 70
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.59 E-value=9.4e-15 Score=126.81 Aligned_cols=76 Identities=11% Similarity=0.289 Sum_probs=71.0
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEccC
Q 013840 349 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRD 428 (435)
Q Consensus 349 ~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a~~ 428 (435)
.++|||+|||+.+|+++|+++|+.||+|.+|.|+.++. ++|||||+|.++++|..|+. |||..|.|+.|+|.++++
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 57999999999999999999999999999999988753 57999999999999999996 899999999999999874
No 71
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.58 E-value=7.1e-14 Score=123.00 Aligned_cols=160 Identities=11% Similarity=0.310 Sum_probs=128.6
Q ss_pred ccCCceEEEecCCCCCCHHHHHHHHhccCceeE--------EEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcC
Q 013840 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDE--------VNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTL 82 (435)
Q Consensus 11 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~--------~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~ 82 (435)
+.-++.|||.|||.++|.+++.++|+.||.|.. |++.+++. |..+|-|.+.|...|++..|++.|++..+.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCccccc
Confidence 345678999999999999999999999997764 88888886 999999999999999999999999987653
Q ss_pred CCCCCceeeeccCchhc---------------------------------------cccceEEEecCCC----CCC----
Q 013840 83 PGASSPLQVKYADGELE---------------------------------------RLEHKLFIGMLPK----NVS---- 115 (435)
Q Consensus 83 ~~~~~~i~~~~~~~~~~---------------------------------------~~~~~l~v~~lp~----~~t---- 115 (435)
++.++|..+..+.. +..++|.++|+=. ..+
T Consensus 210 ---g~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~ 286 (382)
T KOG1548|consen 210 ---GKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLL 286 (382)
T ss_pred ---CcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHH
Confidence 36666655532111 1147899998821 223
Q ss_pred ---HHHHHHhhhccCCeeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHHcCCCcCCCCcceEEE
Q 013840 116 ---EAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (435)
Q Consensus 116 ---~~~l~~~f~~~g~i~~v~~~~~~~~~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v 178 (435)
+++|.+-+++||.|.+|.++... +.|.+.|.|.+.+.|..||+.|+|.. ++|+++.-.+
T Consensus 287 ~dlkedl~eec~K~G~v~~vvv~d~h---PdGvvtV~f~n~eeA~~ciq~m~GR~-fdgRql~A~i 348 (382)
T KOG1548|consen 287 NDLKEDLTEECEKFGQVRKVVVYDRH---PDGVVTVSFRNNEEADQCIQTMDGRW-FDGRQLTASI 348 (382)
T ss_pred HHHHHHHHHHHHHhCCcceEEEeccC---CCceeEEEeCChHHHHHHHHHhcCee-ecceEEEEEE
Confidence 35677889999999999998654 57899999999999999999999975 8998865444
No 72
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.57 E-value=4.3e-14 Score=116.76 Aligned_cols=156 Identities=25% Similarity=0.325 Sum_probs=119.3
Q ss_pred cCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEe-cCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCC
Q 013840 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIK-DKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (435)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~-~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~ 87 (435)
.+...-+||||.+||-++...||..+|.+|.-.+...+.. ++.....+..|||.|.+.++|..|+++|||..+-.....
T Consensus 29 ~~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~s 108 (284)
T KOG1457|consen 29 DEPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGS 108 (284)
T ss_pred ccccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCc
Confidence 3445679999999999999999999999997677665544 333334557999999999999999999999877655555
Q ss_pred ceeeeccCchhc--cc----------------------------------------------------------------
Q 013840 88 PLQVKYADGELE--RL---------------------------------------------------------------- 101 (435)
Q Consensus 88 ~i~~~~~~~~~~--~~---------------------------------------------------------------- 101 (435)
.+.+..++...+ +.
T Consensus 109 tLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~ 188 (284)
T KOG1457|consen 109 TLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDS 188 (284)
T ss_pred eeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhh
Confidence 555544422111 10
Q ss_pred ---------------------cceEEEecCCCCCCHHHHHHhhhccCCeeEEEEecCCCCCcccEEEEEeCCHHHHHHHH
Q 013840 102 ---------------------EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAAL 160 (435)
Q Consensus 102 ---------------------~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~~~~~~g~afV~f~~~e~a~~a~ 160 (435)
-.++||.||..+++|++|+.+|+.|.....+++... . ....||++|++.+.|..|+
T Consensus 189 ~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~-~--g~~vaf~~~~~~~~at~am 265 (284)
T KOG1457|consen 189 KAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR-G--GMPVAFADFEEIEQATDAM 265 (284)
T ss_pred cCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC-C--CcceEeecHHHHHHHHHHH
Confidence 047999999999999999999999976554454322 2 3569999999999999999
Q ss_pred HHHcCCC
Q 013840 161 EAINGKH 167 (435)
Q Consensus 161 ~~l~~~~ 167 (435)
..|.|..
T Consensus 266 ~~lqg~~ 272 (284)
T KOG1457|consen 266 NHLQGNL 272 (284)
T ss_pred HHhhcce
Confidence 9998864
No 73
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.57 E-value=4.2e-15 Score=121.24 Aligned_cols=82 Identities=27% Similarity=0.448 Sum_probs=78.6
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 427 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a~ 427 (435)
..++|.|-||-+.+|.++|+.+|++||.|-+|.|++|+.++.++|||||.|....||+.|+++|+|..|.|+.|+|++|+
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 013840 428 DN 429 (435)
Q Consensus 428 ~~ 429 (435)
--
T Consensus 92 yg 93 (256)
T KOG4207|consen 92 YG 93 (256)
T ss_pred cC
Confidence 43
No 74
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.56 E-value=1.8e-14 Score=104.08 Aligned_cols=80 Identities=20% Similarity=0.337 Sum_probs=72.9
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 427 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a~ 427 (435)
.++.|||+|||+++|.|++.++|.+||.|..|+|-..++ .+|.|||.|++..+|.+|+..|+|+.+.++.+.|-+-.
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 568999999999999999999999999999999976654 48999999999999999999999999999999998865
Q ss_pred CCc
Q 013840 428 DNK 430 (435)
Q Consensus 428 ~~~ 430 (435)
...
T Consensus 94 ~~~ 96 (124)
T KOG0114|consen 94 PED 96 (124)
T ss_pred HHH
Confidence 543
No 75
>PLN03213 repressor of silencing 3; Provisional
Probab=99.54 E-value=2.5e-14 Score=131.19 Aligned_cols=79 Identities=19% Similarity=0.460 Sum_probs=72.9
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCH--HHHHHHHHhcCCceeCCeEEEEE
Q 013840 347 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESP--ASAQNAIAMMNGCQLGGKKLKVQ 424 (435)
Q Consensus 347 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~--~~A~~A~~~l~g~~l~gr~i~v~ 424 (435)
....+|||+||++.+|++||+++|+.||.|.+|.|++ ++| ||||||+|.+. .++.+|+..|||..+.||.|+|.
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 3568999999999999999999999999999999994 477 99999999987 78999999999999999999999
Q ss_pred EccCC
Q 013840 425 LKRDN 429 (435)
Q Consensus 425 ~a~~~ 429 (435)
.|+..
T Consensus 84 KAKP~ 88 (759)
T PLN03213 84 KAKEH 88 (759)
T ss_pred eccHH
Confidence 98753
No 76
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=5.2e-14 Score=118.14 Aligned_cols=85 Identities=24% Similarity=0.400 Sum_probs=77.0
Q ss_pred CccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCce
Q 013840 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (435)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i 89 (435)
+..++++|.|.||+.++++++|+++|.+||.|..+.+.+|+.||.++|||||.|.+.++|.+||+.|||.-+ ...-+
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gy---d~LIL 261 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGY---DNLIL 261 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCccc---ceEEE
Confidence 445889999999999999999999999999999999999999999999999999999999999999998653 33677
Q ss_pred eeeccCch
Q 013840 90 QVKYADGE 97 (435)
Q Consensus 90 ~~~~~~~~ 97 (435)
++.|+.++
T Consensus 262 rvEwskP~ 269 (270)
T KOG0122|consen 262 RVEWSKPS 269 (270)
T ss_pred EEEecCCC
Confidence 88888764
No 77
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=2.8e-14 Score=107.29 Aligned_cols=85 Identities=19% Similarity=0.383 Sum_probs=76.3
Q ss_pred ccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCC
Q 013840 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (435)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~ 87 (435)
.+.-..++||||+||+..++|+.|.++|+++|+|..|.|=.|+.+..+.|||||+|-+.++|..|++.+++..+ ..+
T Consensus 30 ~~a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrL---ddr 106 (153)
T KOG0121|consen 30 LEALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRL---DDR 106 (153)
T ss_pred HHHHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcc---ccc
Confidence 34457899999999999999999999999999999999999999999999999999999999999999999864 447
Q ss_pred ceeeeccC
Q 013840 88 PLQVKYAD 95 (435)
Q Consensus 88 ~i~~~~~~ 95 (435)
+|++.|..
T Consensus 107 ~ir~D~D~ 114 (153)
T KOG0121|consen 107 PIRIDWDA 114 (153)
T ss_pred ceeeeccc
Confidence 88877653
No 78
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.51 E-value=7e-14 Score=99.82 Aligned_cols=64 Identities=30% Similarity=0.635 Sum_probs=60.1
Q ss_pred EEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCc
Q 013840 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKT 81 (435)
Q Consensus 17 l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~ 81 (435)
|||+|||+++|+++|+++|+.||.|..+++..+ .++..+|+|||+|.+.++|++|++.+++..+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~ 64 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKI 64 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEE
Confidence 799999999999999999999999999999988 4689999999999999999999999998653
No 79
>smart00362 RRM_2 RNA recognition motif.
Probab=99.50 E-value=1.5e-13 Score=98.49 Aligned_cols=72 Identities=39% Similarity=0.714 Sum_probs=67.7
Q ss_pred eEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEE
Q 013840 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 424 (435)
Q Consensus 351 ~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~ 424 (435)
+|+|+|||..+++++|+++|+.||.|..+.+..++ +.++|+|||+|.+.++|.+|+..+++..+.|++|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998775 7889999999999999999999999999999999874
No 80
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.50 E-value=5e-15 Score=118.35 Aligned_cols=80 Identities=28% Similarity=0.505 Sum_probs=76.7
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 427 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a~ 427 (435)
++.-|||+|||+++|+.||..+|++||+|+.|.+++|+.||+++||||+.|++....-.||.-|||..|.||.|+|..--
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 66889999999999999999999999999999999999999999999999999999999999999999999999998543
No 81
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.49 E-value=7.5e-14 Score=105.94 Aligned_cols=83 Identities=25% Similarity=0.448 Sum_probs=79.1
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 427 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a~ 427 (435)
.+..|||.++....|++++.+.|+.||+|+.+++-.|+.+|-.+|||+|+|++.++|++|+..+||..|-|..|.|.|+-
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCc
Q 013840 428 DNK 430 (435)
Q Consensus 428 ~~~ 430 (435)
.+.
T Consensus 151 v~g 153 (170)
T KOG0130|consen 151 VKG 153 (170)
T ss_pred ecC
Confidence 554
No 82
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=2.4e-13 Score=117.36 Aligned_cols=83 Identities=24% Similarity=0.511 Sum_probs=78.9
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 427 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a~ 427 (435)
+-+||||.-|++.++|.+|+..|+.||+|..|.|+.+..+|+++|||||+|+++.+-..|-+..+|..|.|++|.|++.+
T Consensus 100 Py~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvER 179 (335)
T KOG0113|consen 100 PYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVER 179 (335)
T ss_pred ccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEecc
Confidence 55999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCc
Q 013840 428 DNK 430 (435)
Q Consensus 428 ~~~ 430 (435)
.+.
T Consensus 180 gRT 182 (335)
T KOG0113|consen 180 GRT 182 (335)
T ss_pred ccc
Confidence 553
No 83
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.49 E-value=2.2e-13 Score=116.30 Aligned_cols=76 Identities=11% Similarity=0.287 Sum_probs=69.5
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 427 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a~ 427 (435)
.+.+|+|+||+..+|+++|++||+.||+|.+|.|+++ +..+|+|||+|+++++|..|+. |+|..|.|++|.|.-..
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D---~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS---GEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC---CCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 5689999999999999999999999999999999987 4456899999999999999995 89999999999998644
No 84
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=6.5e-14 Score=118.41 Aligned_cols=164 Identities=24% Similarity=0.440 Sum_probs=124.0
Q ss_pred eEEEecCCCCCCHHHHHHhhhccCCeeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHHcCCCcCCCCcceEEEEecCC
Q 013840 104 KLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADT 183 (435)
Q Consensus 104 ~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~~~~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~a~~ 183 (435)
.+||++||+.+.+.+|..+|..||.+..+.+. .+|+||.|.+.-+|..|+..++++. +.|.. +.+.++..
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-------~gf~fv~fed~rda~Dav~~l~~~~-l~~e~--~vve~~r~ 72 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMK-------NGFGFVEFEDPRDADDAVHDLDGKE-LCGER--LVVEHARG 72 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceee-------cccceeccCchhhhhcccchhcCce-eccee--eeeecccc
Confidence 58999999999999999999999999998885 4588999999999999999999976 55554 66666654
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCCCCCCCCCCCCCccCCCCcCccccCCCCCCCCCCccCcCCCCCCCCC
Q 013840 184 EKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGNA 263 (435)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (435)
.+... +....+.-.+
T Consensus 73 ~~~~~-------------------------g~~~~g~r~~---------------------------------------- 87 (216)
T KOG0106|consen 73 KRRGR-------------------------GRPRGGDRRS---------------------------------------- 87 (216)
T ss_pred ccccc-------------------------CCCCCCCccc----------------------------------------
Confidence 31000 0000000000
Q ss_pred CcCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCc
Q 013840 264 MRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSGGQ 343 (435)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (435)
+. ..-.
T Consensus 88 ------------------------------------------------------~~--------------------~~~~ 93 (216)
T KOG0106|consen 88 ------------------------------------------------------DS--------------------RRYR 93 (216)
T ss_pred ------------------------------------------------------hh--------------------hccC
Confidence 00 0000
Q ss_pred ccCCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEE
Q 013840 344 IEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKV 423 (435)
Q Consensus 344 ~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v 423 (435)
.-.-..+.+.|.|+...+.+.+|.++|+.+|.+....++ .+++||+|++.++|.+|+..|++..+.|+.|.+
T Consensus 94 ~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~--------~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 94 PPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR--------RNFAFVEFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred CcccccceeeeccchhhhhHHHHhhhhcccCCCchhhhh--------ccccceeehhhhhhhhcchhccchhhcCceeee
Confidence 000145889999999999999999999999999555442 458999999999999999999999999999998
Q ss_pred E
Q 013840 424 Q 424 (435)
Q Consensus 424 ~ 424 (435)
.
T Consensus 166 ~ 166 (216)
T KOG0106|consen 166 E 166 (216)
T ss_pred c
Confidence 3
No 85
>smart00360 RRM RNA recognition motif.
Probab=99.48 E-value=2.1e-13 Score=97.31 Aligned_cols=71 Identities=38% Similarity=0.681 Sum_probs=67.1
Q ss_pred EeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEE
Q 013840 354 IYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 424 (435)
Q Consensus 354 V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~ 424 (435)
|+|||..+++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|.+|+..+++..+.|++|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999999887778999999999999999999999999999999999874
No 86
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.46 E-value=1.4e-13 Score=115.20 Aligned_cols=80 Identities=24% Similarity=0.353 Sum_probs=69.8
Q ss_pred ccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCcee
Q 013840 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (435)
Q Consensus 11 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~ 90 (435)
+..-++|||+||+|.+..++|++.|.+||+|+++.|+.|+.|++++||+||.|.+.++|.+|++.- ..+++|+.-...
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp--~piIdGR~aNcn 86 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP--NPIIDGRKANCN 86 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC--CCcccccccccc
Confidence 445689999999999999999999999999999999999999999999999999999999999764 346777544444
Q ss_pred ee
Q 013840 91 VK 92 (435)
Q Consensus 91 ~~ 92 (435)
+.
T Consensus 87 lA 88 (247)
T KOG0149|consen 87 LA 88 (247)
T ss_pred hh
Confidence 43
No 87
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=5.1e-14 Score=115.92 Aligned_cols=84 Identities=27% Similarity=0.466 Sum_probs=80.3
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 427 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a~ 427 (435)
.-++|||++|-.+||+.-|...|=.||.|..|.|+.|-+++++||||||+|...|||.+|+.-||+.+|.||.|+|.+|+
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCcC
Q 013840 428 DNKQ 431 (435)
Q Consensus 428 ~~~~ 431 (435)
+-+-
T Consensus 89 P~ki 92 (298)
T KOG0111|consen 89 PEKI 92 (298)
T ss_pred Cccc
Confidence 7653
No 88
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.45 E-value=3.6e-13 Score=96.08 Aligned_cols=63 Identities=32% Similarity=0.575 Sum_probs=57.7
Q ss_pred EEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCC
Q 013840 17 LFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKK 80 (435)
Q Consensus 17 l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~ 80 (435)
|||+|||+++++++|+++|+.||.|..+++..++. +..+|+|||+|.+.++|++|++.+++..
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~ 63 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKE 63 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcE
Confidence 79999999999999999999999999999999987 8999999999999999999999987654
No 89
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.44 E-value=2.2e-13 Score=128.51 Aligned_cols=82 Identities=33% Similarity=0.604 Sum_probs=79.6
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEccCC
Q 013840 350 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRDN 429 (435)
Q Consensus 350 ~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a~~~ 429 (435)
++|||+|+|+++++++|.++|+..|.|.++++..|+++|+++||||++|.+.++|..|++.|||..+.||+|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred cC
Q 013840 430 KQ 431 (435)
Q Consensus 430 ~~ 431 (435)
+.
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 64
No 90
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=1.4e-13 Score=116.43 Aligned_cols=143 Identities=24% Similarity=0.449 Sum_probs=116.4
Q ss_pred ceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCceeeecc
Q 013840 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYA 94 (435)
Q Consensus 15 ~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~~~~~ 94 (435)
..+||++||+.+.+.+|..||+.||.+..+.+.. ||+||.|++..+|..|+..+++..+ .+.. +.+.++
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l-~~e~--~vve~~ 70 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKEL-CGER--LVVEHA 70 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCcee-ccee--eeeecc
Confidence 4689999999999999999999999999887733 4999999999999999999999754 3322 555555
Q ss_pred Cchh---------------------ccccceEEEecCCCCCCHHHHHHhhhccCCeeEEEEecCCCCCcccEEEEEeCCH
Q 013840 95 DGEL---------------------ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETK 153 (435)
Q Consensus 95 ~~~~---------------------~~~~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~~~~~~g~afV~f~~~ 153 (435)
.... ......+.|.++...+.+.+|.+.|+.+|.+....+ ..+++||+|+..
T Consensus 71 r~~~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~-------~~~~~~v~Fs~~ 143 (216)
T KOG0106|consen 71 RGKRRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA-------RRNFAFVEFSEQ 143 (216)
T ss_pred cccccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh-------hccccceeehhh
Confidence 4210 112467889999999999999999999999854444 256999999999
Q ss_pred HHHHHHHHHHcCCCcCCCCcceE
Q 013840 154 EQALAALEAINGKHKMEGSSVPL 176 (435)
Q Consensus 154 e~a~~a~~~l~~~~~~~g~~~~l 176 (435)
++|.+|++.|++.. +.++.+.+
T Consensus 144 ~da~ra~~~l~~~~-~~~~~l~~ 165 (216)
T KOG0106|consen 144 EDAKRALEKLDGKK-LNGRRISV 165 (216)
T ss_pred hhhhhcchhccchh-hcCceeee
Confidence 99999999999987 67776433
No 91
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.43 E-value=8.9e-13 Score=95.40 Aligned_cols=85 Identities=21% Similarity=0.357 Sum_probs=71.6
Q ss_pred cccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCC
Q 013840 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (435)
Q Consensus 7 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~ 86 (435)
.+..+..++.|||+|||+++|.+++.++|.+||.|..|++=+.+ ..+|.|||.|++..+|++|++.|+|..+ ..
T Consensus 11 ~rlppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~---~~ 84 (124)
T KOG0114|consen 11 IRLPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNV---DN 84 (124)
T ss_pred CCCChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhccccc---CC
Confidence 35566778999999999999999999999999999999886654 4679999999999999999999998754 33
Q ss_pred CceeeeccCch
Q 013840 87 SPLQVKYADGE 97 (435)
Q Consensus 87 ~~i~~~~~~~~ 97 (435)
+.+.+.+..+.
T Consensus 85 ryl~vlyyq~~ 95 (124)
T KOG0114|consen 85 RYLVVLYYQPE 95 (124)
T ss_pred ceEEEEecCHH
Confidence 67766665543
No 92
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.43 E-value=1.6e-12 Score=93.57 Aligned_cols=74 Identities=35% Similarity=0.693 Sum_probs=69.0
Q ss_pred eEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEE
Q 013840 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 425 (435)
Q Consensus 351 ~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~ 425 (435)
+|+|+|||..+++++|+++|+.||.|..+.+..++ .+.++|+|||+|.+.++|..|+..+++..+.|++|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~-~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDK-DTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 48999999999999999999999999999999876 447899999999999999999999999999999999874
No 93
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.42 E-value=8.6e-13 Score=89.33 Aligned_cols=56 Identities=41% Similarity=0.641 Sum_probs=51.1
Q ss_pred HHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 013840 366 LGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 426 (435)
Q Consensus 366 L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a 426 (435)
|+++|++||+|.++.+..+. +++|||+|.+.++|..|++.|||..+.|++|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 78999999999999997653 589999999999999999999999999999999986
No 94
>smart00361 RRM_1 RNA recognition motif.
Probab=99.42 E-value=8.3e-13 Score=93.71 Aligned_cols=62 Identities=23% Similarity=0.485 Sum_probs=55.9
Q ss_pred HHHHHHHhh----cCCcEEEEE-EEeeCCC--CCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEE
Q 013840 363 DQELGNAFQ----AFGRVLSAK-VFVDKAT--GVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 424 (435)
Q Consensus 363 ~~~L~~~F~----~fG~v~~v~-i~~~~~~--g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~ 424 (435)
+++|+++|+ .||.|.+|. |..++.+ +.++|+|||+|.+.++|.+|+..|||..+.||.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578888988 999999995 7666656 8999999999999999999999999999999999863
No 95
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.38 E-value=2.3e-12 Score=119.19 Aligned_cols=79 Identities=35% Similarity=0.634 Sum_probs=76.5
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 013840 349 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 427 (435)
Q Consensus 349 ~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a~ 427 (435)
.++|||+|||..+|+++|+++|..||.|.++.|..++.+|+++|+|||+|.++++|..|++.++|..|.|++|.|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 5899999999999999999999999999999999998899999999999999999999999999999999999999965
No 96
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.36 E-value=3.6e-12 Score=110.82 Aligned_cols=75 Identities=15% Similarity=0.168 Sum_probs=66.1
Q ss_pred CceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCceeeec
Q 013840 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKY 93 (435)
Q Consensus 14 ~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~~~~ 93 (435)
.++|||+|||+.+|+++|+++|+.||.|.+|.|+.++. .+|||||+|.+.++|.+||. |+|.. +.+ +.|.+.+
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~-l~g--r~V~Vt~ 76 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGAT-IVD--QSVTITP 76 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCe-eCC--ceEEEEe
Confidence 57999999999999999999999999999999998864 46899999999999999994 88875 444 7787777
Q ss_pred cC
Q 013840 94 AD 95 (435)
Q Consensus 94 ~~ 95 (435)
+.
T Consensus 77 a~ 78 (260)
T PLN03120 77 AE 78 (260)
T ss_pred cc
Confidence 65
No 97
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.34 E-value=3.1e-12 Score=102.07 Aligned_cols=78 Identities=23% Similarity=0.408 Sum_probs=66.6
Q ss_pred cCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCceee
Q 013840 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 91 (435)
Q Consensus 12 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~~ 91 (435)
.-.++|||+||+..+++.||...|..||++.+|+|...+ .|||||+|++.-||..|+..|++..+ .| ..+.|
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~-cG--~r~rV 79 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDI-CG--SRIRV 79 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccc-cC--ceEEE
Confidence 347899999999999999999999999999999997754 36999999999999999999999864 34 66666
Q ss_pred eccCch
Q 013840 92 KYADGE 97 (435)
Q Consensus 92 ~~~~~~ 97 (435)
..+...
T Consensus 80 E~S~G~ 85 (195)
T KOG0107|consen 80 ELSTGR 85 (195)
T ss_pred EeecCC
Confidence 655443
No 98
>PLN03213 repressor of silencing 3; Provisional
Probab=99.31 E-value=8.4e-12 Score=114.82 Aligned_cols=85 Identities=22% Similarity=0.341 Sum_probs=72.0
Q ss_pred cccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCH--HHHHHHHHHhcCCCcCCC
Q 013840 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSR--QEADKAVNACHNKKTLPG 84 (435)
Q Consensus 7 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~--e~a~~al~~l~~~~~~~~ 84 (435)
++++.....+|||+||++.+|+++|+..|+.||.|..|.|++ .++ +|||||+|.+. .++.+||..|||..+ .|
T Consensus 3 eees~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEW-KG 77 (759)
T PLN03213 3 EKSSGGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVW-KG 77 (759)
T ss_pred ccccCCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCee-cC
Confidence 445667778999999999999999999999999999999994 345 89999999987 789999999999875 33
Q ss_pred CCCceeeeccCchh
Q 013840 85 ASSPLQVKYADGEL 98 (435)
Q Consensus 85 ~~~~i~~~~~~~~~ 98 (435)
+.|++..+.+..
T Consensus 78 --R~LKVNKAKP~Y 89 (759)
T PLN03213 78 --GRLRLEKAKEHY 89 (759)
T ss_pred --ceeEEeeccHHH
Confidence 777777765433
No 99
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.30 E-value=3.1e-11 Score=111.58 Aligned_cols=122 Identities=34% Similarity=0.547 Sum_probs=102.2
Q ss_pred CceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCceeeec
Q 013840 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKY 93 (435)
Q Consensus 14 ~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~~~~ 93 (435)
.++|||+|||+++|+++|+++|..||.+..+.+..++.++.++|+|||.|.+.++|..|++.+++..+ .+ +.+.+.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~-~~--~~~~v~~ 191 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKEL-EG--RPLRVQK 191 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeE-CC--ceeEeec
Confidence 69999999999999999999999999999999999988899999999999999999999999997754 33 6666655
Q ss_pred cC----chhcc---------------------ccceEEEecCCCCCCHHHHHHhhhccCCeeEEEEecCC
Q 013840 94 AD----GELER---------------------LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS 138 (435)
Q Consensus 94 ~~----~~~~~---------------------~~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~ 138 (435)
.. ..... ....+++.+++..++..++...|..+|.+....+....
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (306)
T COG0724 192 AQPASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSK 261 (306)
T ss_pred cccccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCC
Confidence 21 11111 13568899999999999999999999999766665543
No 100
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.30 E-value=6.9e-12 Score=109.83 Aligned_cols=87 Identities=29% Similarity=0.471 Sum_probs=74.2
Q ss_pred ccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCC
Q 013840 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (435)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~ 87 (435)
++....-..|+|.|||+..-+.||+.+|.+||.|.+|.||-+. ..+|||+||.|++.+||.+|-++|||.. ..| |
T Consensus 90 s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~-VEG--R 164 (376)
T KOG0125|consen 90 SSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTV-VEG--R 164 (376)
T ss_pred CCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcce-eec--e
Confidence 3344455789999999999999999999999999999987764 5599999999999999999999999986 444 8
Q ss_pred ceeeeccCchhc
Q 013840 88 PLQVKYADGELE 99 (435)
Q Consensus 88 ~i~~~~~~~~~~ 99 (435)
.|.|..+..+..
T Consensus 165 kIEVn~ATarV~ 176 (376)
T KOG0125|consen 165 KIEVNNATARVH 176 (376)
T ss_pred EEEEeccchhhc
Confidence 888887765543
No 101
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.29 E-value=4e-10 Score=106.06 Aligned_cols=69 Identities=22% Similarity=0.388 Sum_probs=61.6
Q ss_pred ccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCc
Q 013840 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKT 81 (435)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~ 81 (435)
.+...+.++|+|-|||.++++++|+++|+.||.|.+|+. |.-.+|..||+|-+.-+|+.|++.|++.++
T Consensus 69 ~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~ 137 (549)
T KOG4660|consen 69 SEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREI 137 (549)
T ss_pred CcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHh
Confidence 455778899999999999999999999999999999776 444567999999999999999999998765
No 102
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.27 E-value=4.7e-13 Score=107.15 Aligned_cols=81 Identities=23% Similarity=0.488 Sum_probs=73.7
Q ss_pred CccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCce
Q 013840 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (435)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i 89 (435)
+-.++.-|||+|||+..||.||.-.|++||.|++|.+++|+.||+++||||+.|++.-+-..|+.-|||.++. ++.|
T Consensus 31 ~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~---gRti 107 (219)
T KOG0126|consen 31 EYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKIL---GRTI 107 (219)
T ss_pred hcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceec---ceeE
Confidence 3467889999999999999999999999999999999999999999999999999999999999999998753 3777
Q ss_pred eeec
Q 013840 90 QVKY 93 (435)
Q Consensus 90 ~~~~ 93 (435)
+|..
T Consensus 108 rVDH 111 (219)
T KOG0126|consen 108 RVDH 111 (219)
T ss_pred Eeee
Confidence 7653
No 103
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.26 E-value=4.5e-13 Score=131.11 Aligned_cols=228 Identities=23% Similarity=0.201 Sum_probs=176.9
Q ss_pred CCceEEEecCCCCCCHH-HHHHHHhccCceeEEEEEecCCCCCccc-eEEEEeCCHHHHHHHHHHhcCCCcCCCCCCcee
Q 013840 13 ERVKLFVGQVPKHMTEA-QLLAMFKEFALVDEVNIIKDKTTRASRG-CCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (435)
Q Consensus 13 ~~~~l~v~nLp~~~t~~-~l~~~f~~~g~i~~~~~~~~~~~~~~~g-~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~ 90 (435)
..+..++.++-+..... .++..|..+|.|+.++.....- +.... +++++++...+++.|....-+. +.+ +...
T Consensus 570 ~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~-k~h~q~~~~~~~s~~~~~esat~pa~~~--~a~--~~~a 644 (881)
T KOG0128|consen 570 ERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGF-KAHEQPQQQKVQSKHGSAESATVPAGGA--LAN--RSAA 644 (881)
T ss_pred hhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccc-cccccchhhhhhccccchhhcccccccc--cCC--cccc
Confidence 34566777876666554 6788999999999988765221 22222 8999999999999997653332 332 3333
Q ss_pred eeccCchhcc-----------ccceEEEecCCCCCCHHHHHHhhhccCCeeEEEEe-cCCCCCcccEEEEEeCCHHHHHH
Q 013840 91 VKYADGELER-----------LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQIL-RGSQQTSKGCAFLKYETKEQALA 158 (435)
Q Consensus 91 ~~~~~~~~~~-----------~~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~-~~~~~~~~g~afV~f~~~e~a~~ 158 (435)
+..++++... ...++|++||+..+.+++|...|..+|.+..+.+. .-..++.+|.||+.|..++++.+
T Consensus 645 v~~ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~a 724 (881)
T KOG0128|consen 645 VGLADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGA 724 (881)
T ss_pred CCCCCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhh
Confidence 3333332221 24578999999999999999999999988877776 33467889999999999999999
Q ss_pred HHHHHcCCCcCCCCcceEEEEecCCHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCCCCCCCCCCCCCccCCCCcCcc
Q 013840 159 ALEAINGKHKMEGSSVPLVVKWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLM 238 (435)
Q Consensus 159 a~~~l~~~~~~~g~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (435)
|+....+.. .|
T Consensus 725 aV~f~d~~~--~g------------------------------------------------------------------- 735 (881)
T KOG0128|consen 725 AVAFRDSCF--FG------------------------------------------------------------------- 735 (881)
T ss_pred hhhhhhhhh--hh-------------------------------------------------------------------
Confidence 998655432 11
Q ss_pred ccCCCCCCCCCCccCcCCCCCCCCCCcCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013840 239 QYRLPPMQNQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSP 318 (435)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (435)
T Consensus 736 -------------------------------------------------------------------------------- 735 (881)
T KOG0128|consen 736 -------------------------------------------------------------------------------- 735 (881)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccCCCCCCCCCCCCCCCCCcccCCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEe
Q 013840 319 GSVSPAVANSNPSTSSSGGTGSGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSY 398 (435)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F 398 (435)
...|+|+|.|+..|.++|+.+|+++|++.+++++..+ .|+++|.|+|.|
T Consensus 736 ------------------------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y 784 (881)
T KOG0128|consen 736 ------------------------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDY 784 (881)
T ss_pred ------------------------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccC
Confidence 1358999999999999999999999999999987775 799999999999
Q ss_pred CCHHHHHHHHHhcCCceeCCeEEEEEE
Q 013840 399 ESPASAQNAIAMMNGCQLGGKKLKVQL 425 (435)
Q Consensus 399 ~~~~~A~~A~~~l~g~~l~gr~i~v~~ 425 (435)
.++.+|.+++..+....+..+.+.|..
T Consensus 785 ~~ea~~s~~~~s~d~~~~rE~~~~v~v 811 (881)
T KOG0128|consen 785 NTEADASRKVASVDVAGKRENNGEVQV 811 (881)
T ss_pred CCcchhhhhcccchhhhhhhcCccccc
Confidence 999999999999888887777777776
No 104
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.26 E-value=2.6e-11 Score=104.90 Aligned_cols=84 Identities=19% Similarity=0.378 Sum_probs=74.4
Q ss_pred ccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCC
Q 013840 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (435)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~ 87 (435)
.....+-+||||+-|+++++|.+|++.|..||+|+.|+|+.|+.|++++|||||+|++.-+...|.+..+|.+ +++ +
T Consensus 95 ~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~-Idg--r 171 (335)
T KOG0113|consen 95 NAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIK-IDG--R 171 (335)
T ss_pred cccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCce-ecC--c
Confidence 3444677999999999999999999999999999999999999999999999999999999999999998875 444 6
Q ss_pred ceeeecc
Q 013840 88 PLQVKYA 94 (435)
Q Consensus 88 ~i~~~~~ 94 (435)
.|.|.+.
T Consensus 172 ri~VDvE 178 (335)
T KOG0113|consen 172 RILVDVE 178 (335)
T ss_pred EEEEEec
Confidence 6666544
No 105
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.25 E-value=3.2e-11 Score=103.15 Aligned_cols=75 Identities=13% Similarity=0.170 Sum_probs=63.9
Q ss_pred cCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCceee
Q 013840 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 91 (435)
Q Consensus 12 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~~ 91 (435)
....+|||+||++.+|+++|++||+.||.|.+|+|+.|.. .+|+|||+|.++++|..|+ .|+|..+.+ +.|.+
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~e---t~gfAfVtF~d~~aaetAl-lLnGa~l~d---~~I~I 75 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGE---YACTAYVTFKDAYALETAV-LLSGATIVD---QRVCI 75 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCC---cceEEEEEECCHHHHHHHH-hcCCCeeCC---ceEEE
Confidence 3568999999999999999999999999999999999854 4579999999999999998 788886533 44555
Q ss_pred ec
Q 013840 92 KY 93 (435)
Q Consensus 92 ~~ 93 (435)
..
T Consensus 76 t~ 77 (243)
T PLN03121 76 TR 77 (243)
T ss_pred Ee
Confidence 43
No 106
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.25 E-value=3.4e-11 Score=114.30 Aligned_cols=158 Identities=20% Similarity=0.347 Sum_probs=120.8
Q ss_pred cCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCceee
Q 013840 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 91 (435)
Q Consensus 12 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~~ 91 (435)
.....++|++||...++.+++|++..||++....+++|..++-++||||.+|.++.....|+..|||..+.+ +.+.+
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd---~~lvv 363 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGD---KKLVV 363 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcC---ceeEe
Confidence 345689999999999999999999999999999999999999999999999999999999999999986432 22222
Q ss_pred eccCch-------h------------------ccccceEEEecCC--CCC-CH-------HHHHHhhhccCCeeEEEEec
Q 013840 92 KYADGE-------L------------------ERLEHKLFIGMLP--KNV-SE-------AEVSALFSIYGTIKDLQILR 136 (435)
Q Consensus 92 ~~~~~~-------~------------------~~~~~~l~v~~lp--~~~-t~-------~~l~~~f~~~g~i~~v~~~~ 136 (435)
..+-.. . ......+++.|+- .+. ++ |+|+..+.+||.|..|.+.+
T Consensus 364 q~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr 443 (500)
T KOG0120|consen 364 QRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPR 443 (500)
T ss_pred ehhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCC
Confidence 222100 0 0012344555541 111 11 45667778999999999987
Q ss_pred C-CC---CCcccEEEEEeCCHHHHHHHHHHHcCCCcCCCCc
Q 013840 137 G-SQ---QTSKGCAFLKYETKEQALAALEAINGKHKMEGSS 173 (435)
Q Consensus 137 ~-~~---~~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~ 173 (435)
. .. ....|..||+|++.++|++|++.|+|.. +.++.
T Consensus 444 ~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrK-F~nRt 483 (500)
T KOG0120|consen 444 PYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRK-FANRT 483 (500)
T ss_pred CCCCCCcCCCcccEEEEecChHHHHHHHHHccCce-eCCcE
Confidence 6 33 2346889999999999999999999987 88886
No 107
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=1.8e-11 Score=108.16 Aligned_cols=89 Identities=24% Similarity=0.453 Sum_probs=82.7
Q ss_pred CcccCCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEE
Q 013840 342 GQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKL 421 (435)
Q Consensus 342 ~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i 421 (435)
.....++..+|||.-|..-+|.+||.-+|+.||+|++|.|++|+.+|.+..||||+|.+.++..+|.-.|.+..|.+|+|
T Consensus 232 dAd~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRI 311 (479)
T KOG0415|consen 232 DADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRI 311 (479)
T ss_pred ccccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceE
Confidence 33456678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCc
Q 013840 422 KVQLKRDNK 430 (435)
Q Consensus 422 ~v~~a~~~~ 430 (435)
+|.|+++=.
T Consensus 312 HVDFSQSVs 320 (479)
T KOG0415|consen 312 HVDFSQSVS 320 (479)
T ss_pred Eeehhhhhh
Confidence 999987643
No 108
>smart00362 RRM_2 RNA recognition motif.
Probab=99.24 E-value=5.3e-11 Score=84.95 Aligned_cols=64 Identities=38% Similarity=0.624 Sum_probs=58.7
Q ss_pred eEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCc
Q 013840 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKT 81 (435)
Q Consensus 16 ~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~ 81 (435)
+|+|+|||..++.++|+++|..||.+..+.+..++ +.++|+|||+|.+.++|+.|++.+++..+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~ 64 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKL 64 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEE
Confidence 58999999999999999999999999999988776 67889999999999999999999987543
No 109
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.24 E-value=2.2e-11 Score=92.63 Aligned_cols=84 Identities=21% Similarity=0.308 Sum_probs=75.5
Q ss_pred CccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCce
Q 013840 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (435)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i 89 (435)
...+.-.|||.++...+|+++|.+.|+.||+|+++.+-.|+.|+..+|||.|+|++.++|+.|++.+|+..++ +.++
T Consensus 68 rSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll---~q~v 144 (170)
T KOG0130|consen 68 RSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELL---GQNV 144 (170)
T ss_pred cceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhh---CCce
Confidence 3445567999999999999999999999999999999999999999999999999999999999999998763 3788
Q ss_pred eeeccCc
Q 013840 90 QVKYADG 96 (435)
Q Consensus 90 ~~~~~~~ 96 (435)
.+.|+-.
T Consensus 145 ~VDw~Fv 151 (170)
T KOG0130|consen 145 SVDWCFV 151 (170)
T ss_pred eEEEEEe
Confidence 8888743
No 110
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.21 E-value=2.9e-11 Score=114.23 Aligned_cols=82 Identities=24% Similarity=0.426 Sum_probs=76.4
Q ss_pred ceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCceeeecc
Q 013840 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYA 94 (435)
Q Consensus 15 ~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~~~~~ 94 (435)
+.|||+|+|+++++++|.++|+..|+|.+++++.|+.||+.+||||++|.+.++|.+|++.||+..+ .++.+++.|+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~---~gr~l~v~~~ 95 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEF---NGRKLRVNYA 95 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCccc---CCceEEeecc
Confidence 8999999999999999999999999999999999999999999999999999999999999999875 4489999988
Q ss_pred Cchhc
Q 013840 95 DGELE 99 (435)
Q Consensus 95 ~~~~~ 99 (435)
..+..
T Consensus 96 ~~~~~ 100 (435)
T KOG0108|consen 96 SNRKN 100 (435)
T ss_pred cccch
Confidence 65544
No 111
>smart00360 RRM RNA recognition motif.
Probab=99.21 E-value=7.4e-11 Score=83.89 Aligned_cols=63 Identities=35% Similarity=0.627 Sum_probs=58.6
Q ss_pred EecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCc
Q 013840 19 VGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKT 81 (435)
Q Consensus 19 v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~ 81 (435)
|+|||..+++++|+++|..||.|..+.+..++.++.++|+|||+|.+.++|..|++.+++..+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~ 63 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKEL 63 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCee
Confidence 579999999999999999999999999999887889999999999999999999999987643
No 112
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.21 E-value=2.5e-11 Score=99.40 Aligned_cols=80 Identities=30% Similarity=0.461 Sum_probs=72.8
Q ss_pred cCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCceee
Q 013840 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 91 (435)
Q Consensus 12 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~~ 91 (435)
....+|.|.||-+.++.++|+.+|.+||.|-+|.|.+|+.|+.++|||||.|....||+.|++.|+|. +++| ++|.|
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~-~ldg--RelrV 87 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGA-VLDG--RELRV 87 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcce-eecc--ceeee
Confidence 45689999999999999999999999999999999999999999999999999999999999999997 4666 66666
Q ss_pred ecc
Q 013840 92 KYA 94 (435)
Q Consensus 92 ~~~ 94 (435)
.++
T Consensus 88 q~a 90 (256)
T KOG4207|consen 88 QMA 90 (256)
T ss_pred hhh
Confidence 554
No 113
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=5.7e-10 Score=104.15 Aligned_cols=152 Identities=20% Similarity=0.368 Sum_probs=115.4
Q ss_pred ccccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEe-c--CCCCCccc---eEEEEeCCHHHHHHHHHHhcCC
Q 013840 6 KEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIK-D--KTTRASRG---CCFVICPSRQEADKAVNACHNK 79 (435)
Q Consensus 6 ~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~-~--~~~~~~~g---~afV~f~~~e~a~~al~~l~~~ 79 (435)
.+.....-+++|||++||++++|+.|...|..||.+. +.... . ...-..+| |+|+.|+++.+++..|..+.-.
T Consensus 251 ~~~~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~ 329 (520)
T KOG0129|consen 251 RGYRSPRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEG 329 (520)
T ss_pred CCCCccccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhc
Confidence 4456667789999999999999999999999999866 33221 1 11123566 9999999999999999887431
Q ss_pred CcCCCCCCceeeeccCchh----------------------ccccceEEEecCCCCCCHHHHHHhhh-ccCCeeEEEEec
Q 013840 80 KTLPGASSPLQVKYADGEL----------------------ERLEHKLFIGMLPKNVSEAEVSALFS-IYGTIKDLQILR 136 (435)
Q Consensus 80 ~~~~~~~~~i~~~~~~~~~----------------------~~~~~~l~v~~lp~~~t~~~l~~~f~-~~g~i~~v~~~~ 136 (435)
....-+++.-...+. ....+||||++||..++.++|..+|. -||.|..+-|-.
T Consensus 330 ----~~~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDt 405 (520)
T KOG0129|consen 330 ----EGNYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDT 405 (520)
T ss_pred ----ccceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEecc
Confidence 111111111111111 11258999999999999999999998 899999999988
Q ss_pred C-CCCCcccEEEEEeCCHHHHHHHHHH
Q 013840 137 G-SQQTSKGCAFLKYETKEQALAALEA 162 (435)
Q Consensus 137 ~-~~~~~~g~afV~f~~~e~a~~a~~~ 162 (435)
| +-+-++|-|=|+|.+..+-.+||..
T Consensus 406 D~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 406 DPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CcccCCCCCcceeeecccHHHHHHHhh
Confidence 8 5667899999999999999999975
No 114
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.16 E-value=1.3e-10 Score=95.62 Aligned_cols=80 Identities=31% Similarity=0.428 Sum_probs=74.2
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcC-CcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAF-GRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 426 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~f-G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a 426 (435)
....++|..+|..+.+.++..+|..| |.|..+++.+++.||.++|||||+|.+++.|.-|.+.||++-|.|+.|.|++=
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 45789999999999999999999888 77888888899999999999999999999999999999999999999999874
Q ss_pred c
Q 013840 427 R 427 (435)
Q Consensus 427 ~ 427 (435)
.
T Consensus 128 p 128 (214)
T KOG4208|consen 128 P 128 (214)
T ss_pred C
Confidence 3
No 115
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.15 E-value=3.7e-10 Score=81.02 Aligned_cols=64 Identities=39% Similarity=0.682 Sum_probs=59.0
Q ss_pred eEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCC
Q 013840 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKK 80 (435)
Q Consensus 16 ~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~ 80 (435)
+|+|+|||+.+++++|+++|..+|.|..+.+..++.+ ..+|+|||+|.+.++|+.|++.+++..
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~ 64 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKE 64 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCe
Confidence 5899999999999999999999999999999988754 678999999999999999999998864
No 116
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.12 E-value=3e-10 Score=100.59 Aligned_cols=79 Identities=23% Similarity=0.379 Sum_probs=69.5
Q ss_pred ccCCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhc-CCceeCCeEEE
Q 013840 344 IEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM-NGCQLGGKKLK 422 (435)
Q Consensus 344 ~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l-~g~~l~gr~i~ 422 (435)
.......+|||+||-..+++.+|+++|.+||+|.++.+... +++|||+|.+++.|+.|.+.. +...+.|++|+
T Consensus 223 PeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~ 296 (377)
T KOG0153|consen 223 PEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLK 296 (377)
T ss_pred CcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEE
Confidence 34556799999999889999999999999999999999876 359999999999999988654 45567999999
Q ss_pred EEEccC
Q 013840 423 VQLKRD 428 (435)
Q Consensus 423 v~~a~~ 428 (435)
|.|+++
T Consensus 297 i~Wg~~ 302 (377)
T KOG0153|consen 297 IKWGRP 302 (377)
T ss_pred EEeCCC
Confidence 999998
No 117
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.08 E-value=2.2e-10 Score=111.23 Aligned_cols=77 Identities=19% Similarity=0.393 Sum_probs=72.3
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEccC
Q 013840 349 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRD 428 (435)
Q Consensus 349 ~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a~~ 428 (435)
++||||++|+.++++.||..+|+.||+|.+|.+... +|+|||.+.++.+|.+|+..|+...+.++.|+|.||..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 489999999999999999999999999999988654 68999999999999999999999999999999999988
Q ss_pred CcC
Q 013840 429 NKQ 431 (435)
Q Consensus 429 ~~~ 431 (435)
+.-
T Consensus 495 ~G~ 497 (894)
T KOG0132|consen 495 KGP 497 (894)
T ss_pred CCc
Confidence 754
No 118
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=8.4e-11 Score=97.18 Aligned_cols=86 Identities=23% Similarity=0.363 Sum_probs=78.8
Q ss_pred cCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCceee
Q 013840 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 91 (435)
Q Consensus 12 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~~ 91 (435)
...++|||++|-..+|+.-|...|=+||.|..|.+..|-.+.+++|||||+|...|||..||..||+..+ . ++.|++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL-~--GrtirV 84 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESEL-F--GRTIRV 84 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhh-c--ceeEEE
Confidence 4578999999999999999999999999999999999999999999999999999999999999999875 3 399999
Q ss_pred eccCchhcc
Q 013840 92 KYADGELER 100 (435)
Q Consensus 92 ~~~~~~~~~ 100 (435)
.++.+..-+
T Consensus 85 N~AkP~kik 93 (298)
T KOG0111|consen 85 NLAKPEKIK 93 (298)
T ss_pred eecCCcccc
Confidence 999876544
No 119
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.02 E-value=2.4e-09 Score=100.49 Aligned_cols=85 Identities=25% Similarity=0.515 Sum_probs=77.7
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 427 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a~ 427 (435)
.+++|||.+|...+-..||+.+|++||+|+-.+|+.+..+--.+||+||++.+.++|.+||..||...|+||.|.|..++
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 46899999999999999999999999999999998776566679999999999999999999999999999999999988
Q ss_pred CCcCC
Q 013840 428 DNKQN 432 (435)
Q Consensus 428 ~~~~~ 432 (435)
....+
T Consensus 484 NEp~G 488 (940)
T KOG4661|consen 484 NEPGG 488 (940)
T ss_pred cCccc
Confidence 76544
No 120
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.02 E-value=9.4e-11 Score=96.99 Aligned_cols=141 Identities=20% Similarity=0.251 Sum_probs=116.2
Q ss_pred CccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCce
Q 013840 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (435)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i 89 (435)
.....+||||.|+...++|+-|.|+|-.-|+|..++|..++. ++.+ ||||.|.++-++.-|++.+||-.+. + .++
T Consensus 5 aae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~-~--~e~ 79 (267)
T KOG4454|consen 5 AAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLE-E--DEE 79 (267)
T ss_pred CcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhc-c--chh
Confidence 345678999999999999999999999999999999988875 5555 9999999999999999999987642 2 444
Q ss_pred eeeccCchhccccceEEEec----CCCCCCHHHHHHhhhccCCeeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHHcC
Q 013840 90 QVKYADGELERLEHKLFIGM----LPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 165 (435)
Q Consensus 90 ~~~~~~~~~~~~~~~l~v~~----lp~~~t~~~l~~~f~~~g~i~~v~~~~~~~~~~~g~afV~f~~~e~a~~a~~~l~~ 165 (435)
++. ++.++ |...++++.+++.|+..|+++.+++.++.+|+++.+.++.+...-..-.++....+
T Consensus 80 q~~------------~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~ 147 (267)
T KOG4454|consen 80 QRT------------LRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQG 147 (267)
T ss_pred hcc------------cccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcc
Confidence 443 33444 56678999999999999999999999998899999999998877777777776655
Q ss_pred CC
Q 013840 166 KH 167 (435)
Q Consensus 166 ~~ 167 (435)
..
T Consensus 148 l~ 149 (267)
T KOG4454|consen 148 LE 149 (267)
T ss_pred cC
Confidence 43
No 121
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.01 E-value=5.2e-08 Score=93.90 Aligned_cols=76 Identities=17% Similarity=0.237 Sum_probs=67.5
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCcEEE-EEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEE
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGRVLS-AKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 424 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~-v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~ 424 (435)
-+.+|||..||..+++.++.++|.+--.|++ |.|.+.+ +++-++.|||.|.+++++..|...-+.+.++.|.|+|+
T Consensus 433 ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~ 509 (944)
T KOG4307|consen 433 AGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVD 509 (944)
T ss_pred ccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhhhcccccccCceEEEee
Confidence 4589999999999999999999998777766 6776665 89999999999999999999999888888888999987
No 122
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=99.01 E-value=1.4e-09 Score=94.53 Aligned_cols=82 Identities=23% Similarity=0.386 Sum_probs=76.0
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 013840 347 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 426 (435)
Q Consensus 347 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a 426 (435)
...+.|+|.|||+.|+++||+++|..||.+..+.+..++ .|++.|.|=|.|...+||.+|++.+||..+.|+.|++.+.
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 355899999999999999999999999999999999886 8999999999999999999999999999999999998876
Q ss_pred cCC
Q 013840 427 RDN 429 (435)
Q Consensus 427 ~~~ 429 (435)
.+.
T Consensus 160 ~~~ 162 (243)
T KOG0533|consen 160 SSP 162 (243)
T ss_pred cCc
Confidence 544
No 123
>smart00361 RRM_1 RNA recognition motif.
Probab=98.99 E-value=1.9e-09 Score=76.33 Aligned_cols=60 Identities=18% Similarity=0.365 Sum_probs=50.3
Q ss_pred HHHHHHHHh----ccCceeEEE-EEecCCC--CCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCcee
Q 013840 28 EAQLLAMFK----EFALVDEVN-IIKDKTT--RASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (435)
Q Consensus 28 ~~~l~~~f~----~~g~i~~~~-~~~~~~~--~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~ 90 (435)
+++|+++|+ .||.|.++. ++.++.+ +.++|+|||.|.+.++|.+|++.|||.. +.| +.|.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~-~~g--r~l~ 68 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRY-FDG--RTVK 68 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCE-ECC--EEEE
Confidence 578888888 999999995 7777666 8899999999999999999999999975 443 4443
No 124
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.98 E-value=1.6e-08 Score=98.73 Aligned_cols=102 Identities=27% Similarity=0.487 Sum_probs=78.2
Q ss_pred CCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCceeee
Q 013840 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVK 92 (435)
Q Consensus 13 ~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~~~ 92 (435)
-++||||++|+..+++.||.++|.+||.|.+|+++..+ |||||.+..-++|.+|+.+|++..+ ..+.|++.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R------~cAfI~M~~RqdA~kalqkl~n~kv---~~k~Iki~ 490 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPR------GCAFIKMVRRQDAEKALQKLSNVKV---ADKTIKIA 490 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccCC------ceeEEEEeehhHHHHHHHHHhcccc---cceeeEEe
Confidence 36999999999999999999999999999999986654 5999999999999999999987654 44888999
Q ss_pred ccCchhccc------cceEEEecCCCCCCHHHHHHhh
Q 013840 93 YADGELERL------EHKLFIGMLPKNVSEAEVSALF 123 (435)
Q Consensus 93 ~~~~~~~~~------~~~l~v~~lp~~~t~~~l~~~f 123 (435)
|+-..-.+. +..+=|+-||++.-.+++..++
T Consensus 491 Wa~g~G~kse~k~~wD~~lGVt~IP~~kLt~dl~~~~ 527 (894)
T KOG0132|consen 491 WAVGKGPKSEYKDYWDVELGVTYIPWEKLTDDLEAWC 527 (894)
T ss_pred eeccCCcchhhhhhhhcccCeeEeehHhcCHHHHHhh
Confidence 985443332 2233455566664334444444
No 125
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.96 E-value=3.7e-09 Score=99.50 Aligned_cols=84 Identities=33% Similarity=0.633 Sum_probs=73.5
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 427 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a~ 427 (435)
...+|||+|||.+++..+|+++|..||+|+...|......++..+||||+|.+.++++.|+.+ +-..+++++|.|+..+
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKR 365 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecc
Confidence 446699999999999999999999999999998876543455559999999999999999998 6889999999999988
Q ss_pred CCcCC
Q 013840 428 DNKQN 432 (435)
Q Consensus 428 ~~~~~ 432 (435)
....+
T Consensus 366 ~~~~g 370 (419)
T KOG0116|consen 366 PGFRG 370 (419)
T ss_pred ccccc
Confidence 76554
No 126
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.93 E-value=4e-09 Score=71.17 Aligned_cols=56 Identities=34% Similarity=0.708 Sum_probs=47.9
Q ss_pred HHHhhhccCCeeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHHcCCCcCCCCcceEEEEec
Q 013840 119 VSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181 (435)
Q Consensus 119 l~~~f~~~g~i~~v~~~~~~~~~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~a 181 (435)
|+++|+.||+|.++.+.... +++|||+|.+.++|..|++.|||.. +.|+. |.|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~-~~g~~--l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQ-FNGRP--LKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSE-ETTEE--EEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCE-ECCcE--EEEEEC
Confidence 68999999999999998764 5899999999999999999999987 77775 666654
No 127
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.89 E-value=1.3e-09 Score=92.45 Aligned_cols=79 Identities=35% Similarity=0.530 Sum_probs=74.6
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 426 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a 426 (435)
....||-+.|.-+++++.|-..|.+|......++++++.+|+++||+||.|.++.++.+|+..|+|+.++.|.|++.-.
T Consensus 189 ~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 189 DDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred ccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 5688999999999999999999999999999999999999999999999999999999999999999999999987644
No 128
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.87 E-value=9e-11 Score=115.32 Aligned_cols=147 Identities=21% Similarity=0.277 Sum_probs=123.8
Q ss_pred cCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCceee
Q 013840 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 91 (435)
Q Consensus 12 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~~ 91 (435)
+..+++|++||+..+.+.+|...|..+|.+..+.+.-.+..++.+|+|||.|..++++.+||...... +.|
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~--~~g------- 735 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSC--FFG------- 735 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhh--hhh-------
Confidence 56689999999999999999999999998888877766667899999999999999999999775443 222
Q ss_pred eccCchhccccceEEEecCCCCCCHHHHHHhhhccCCeeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHHcCCCcCCC
Q 013840 92 KYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEG 171 (435)
Q Consensus 92 ~~~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~~~~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g 171 (435)
+..++|+|.|+..|.++++.++..+|.+....++....|+++|.|+|.|.++.++.++....+... +..
T Consensus 736 ----------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~-~rE 804 (881)
T KOG0128|consen 736 ----------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAG-KRE 804 (881)
T ss_pred ----------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhh-hhh
Confidence 246899999999999999999999999999999999999999999999999999999887666532 333
Q ss_pred CcceEEE
Q 013840 172 SSVPLVV 178 (435)
Q Consensus 172 ~~~~l~v 178 (435)
..+.+.+
T Consensus 805 ~~~~v~v 811 (881)
T KOG0128|consen 805 NNGEVQV 811 (881)
T ss_pred cCccccc
Confidence 3333333
No 129
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.85 E-value=2.9e-08 Score=73.65 Aligned_cols=81 Identities=19% Similarity=0.255 Sum_probs=71.9
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhc--CCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeC----CeEEEE
Q 013840 350 ANLFIYHIPQEFGDQELGNAFQA--FGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLG----GKKLKV 423 (435)
Q Consensus 350 ~~v~V~nLp~~~t~~~L~~~F~~--fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~----gr~i~v 423 (435)
+||+|+|||-..|.++|.+++.. .|....+.++.|..++...|||||.|.+++.|.+-.+.+||+.+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 79999999999999999999854 567788899999889999999999999999999999999999875 477888
Q ss_pred EEccCCc
Q 013840 424 QLKRDNK 430 (435)
Q Consensus 424 ~~a~~~~ 430 (435)
.+|+-+.
T Consensus 82 ~yAriQG 88 (97)
T PF04059_consen 82 SYARIQG 88 (97)
T ss_pred ehhHhhC
Confidence 9988654
No 130
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=7.4e-08 Score=90.31 Aligned_cols=63 Identities=24% Similarity=0.360 Sum_probs=59.4
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhh-cCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHh
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQ-AFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~-~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 410 (435)
+.+||||++||.-++.++|-.+|. -||.|..+-|=.|++-.-++|-|-|.|.+-..-.+||++
T Consensus 369 prrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 369 PRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred ccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 568999999999999999999998 699999999999987899999999999999999999986
No 131
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.80 E-value=5.1e-09 Score=103.70 Aligned_cols=167 Identities=20% Similarity=0.255 Sum_probs=134.9
Q ss_pred ccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCC
Q 013840 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (435)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~ 87 (435)
..+...+++||++||+..+++.+|+..|..+|.+.+|.|-..+. +.-.-||||.|.+...+-.|...+.+..+..|
T Consensus 366 ~DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g--- 441 (975)
T KOG0112|consen 366 LDDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGNG--- 441 (975)
T ss_pred ccchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccchhhcCCccccC---
Confidence 44567789999999999999999999999999999988765543 44556999999999999999888877654333
Q ss_pred ceeeeccCchhccccceEEEecCCCCCCHHHHHHhhhccCCeeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHHcCCC
Q 013840 88 PLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKH 167 (435)
Q Consensus 88 ~i~~~~~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~~~~~~g~afV~f~~~e~a~~a~~~l~~~~ 167 (435)
.+++.+..+ .....+.++++++...+....|...|..||+|..|.+... .-||||.|++...++.|++.+.|..
T Consensus 442 ~~r~glG~~-kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg-----q~yayi~yes~~~aq~a~~~~rgap 515 (975)
T KOG0112|consen 442 THRIGLGQP-KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG-----QPYAYIQYESPPAAQAATHDMRGAP 515 (975)
T ss_pred ccccccccc-ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC-----CcceeeecccCccchhhHHHHhcCc
Confidence 333333332 2233567999999999999999999999999998887654 4599999999999999999999977
Q ss_pred cCCCCcceEEEEecCCHH
Q 013840 168 KMEGSSVPLVVKWADTEK 185 (435)
Q Consensus 168 ~~~g~~~~l~v~~a~~~~ 185 (435)
+.+-...+.|.++....
T Consensus 516 -~G~P~~r~rvdla~~~~ 532 (975)
T KOG0112|consen 516 -LGGPPRRLRVDLASPPG 532 (975)
T ss_pred -CCCCCcccccccccCCC
Confidence 66666678888887754
No 132
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.77 E-value=2.5e-08 Score=96.29 Aligned_cols=83 Identities=20% Similarity=0.364 Sum_probs=74.6
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeC---CCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEE
Q 013840 346 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDK---ATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLK 422 (435)
Q Consensus 346 ~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~---~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~ 422 (435)
.+..++|||.||+..++++.|..-|..||+|.+|+|+..+ +..+.+-+|||.|-++.+|.+|++.|+|..+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 4567999999999999999999999999999999998543 2355677999999999999999999999999999999
Q ss_pred EEEccC
Q 013840 423 VQLKRD 428 (435)
Q Consensus 423 v~~a~~ 428 (435)
+-|++.
T Consensus 251 ~gWgk~ 256 (877)
T KOG0151|consen 251 LGWGKA 256 (877)
T ss_pred eccccc
Confidence 999853
No 133
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.76 E-value=3.2e-08 Score=81.76 Aligned_cols=81 Identities=23% Similarity=0.351 Sum_probs=68.5
Q ss_pred CccCCceEEEecCCCCCCHHHHHHHHhcc-CceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCc
Q 013840 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEF-ALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (435)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~-g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~ 88 (435)
.......+++..+|.-+.+.++..+|..| |.+..+++-+++.||.++|||||+|++++.|..|-+.||+..+ .+ +.
T Consensus 45 ~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl-~e--~l 121 (214)
T KOG4208|consen 45 EQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLL-ME--HL 121 (214)
T ss_pred ccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhh-hh--he
Confidence 34455678999999999999999999998 7888888889999999999999999999999999999999743 33 44
Q ss_pred eeeec
Q 013840 89 LQVKY 93 (435)
Q Consensus 89 i~~~~ 93 (435)
+.+++
T Consensus 122 L~c~v 126 (214)
T KOG4208|consen 122 LECHV 126 (214)
T ss_pred eeeEE
Confidence 54443
No 134
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.75 E-value=4.7e-09 Score=94.95 Aligned_cols=81 Identities=20% Similarity=0.389 Sum_probs=74.9
Q ss_pred ceEE-EeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEccC
Q 013840 350 ANLF-IYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRD 428 (435)
Q Consensus 350 ~~v~-V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a~~ 428 (435)
.+++ |.||++++++++|+.+|..+|.|..++++.+..++.++|+|+|.|.+...+..++.. +...++++.+.+.+...
T Consensus 185 ~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 263 (285)
T KOG4210|consen 185 DTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEP 263 (285)
T ss_pred ccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCC
Confidence 3455 999999999999999999999999999999999999999999999999999999998 89999999999998877
Q ss_pred CcC
Q 013840 429 NKQ 431 (435)
Q Consensus 429 ~~~ 431 (435)
...
T Consensus 264 ~~~ 266 (285)
T KOG4210|consen 264 RPK 266 (285)
T ss_pred Ccc
Confidence 643
No 135
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.74 E-value=2e-08 Score=87.73 Aligned_cols=87 Identities=21% Similarity=0.315 Sum_probs=80.6
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 013840 347 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 426 (435)
Q Consensus 347 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a 426 (435)
.+...+||+|+.+.+|.+++..+|+.+|.|..+.|+.++..|.++||+||+|.+.+.+..|+. |+|..|.|+.|.|.+.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 356899999999999999999999999999999999999888999999999999999999999 8999999999999998
Q ss_pred cCCcCCCC
Q 013840 427 RDNKQNKP 434 (435)
Q Consensus 427 ~~~~~~~~ 434 (435)
+.+--+.+
T Consensus 178 r~~~pg~~ 185 (231)
T KOG4209|consen 178 RTNVPGMG 185 (231)
T ss_pred eeecCCcC
Confidence 88755544
No 136
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.73 E-value=2.9e-08 Score=93.39 Aligned_cols=83 Identities=18% Similarity=0.285 Sum_probs=72.1
Q ss_pred CccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCce
Q 013840 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (435)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i 89 (435)
...-.+.|||.+|...+--.+|+.+|++||.|...+++.+-.+...++|+||.+.+.++|.+||+.||...+ +++.|
T Consensus 401 rs~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTEL---HGrmI 477 (940)
T KOG4661|consen 401 RSTLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTEL---HGRMI 477 (940)
T ss_pred ccccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhh---cceee
Confidence 345568999999999999999999999999999999999988899999999999999999999999988764 33666
Q ss_pred eeeccC
Q 013840 90 QVKYAD 95 (435)
Q Consensus 90 ~~~~~~ 95 (435)
.|..+.
T Consensus 478 SVEkaK 483 (940)
T KOG4661|consen 478 SVEKAK 483 (940)
T ss_pred eeeecc
Confidence 665543
No 137
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=2.2e-08 Score=88.93 Aligned_cols=81 Identities=19% Similarity=0.317 Sum_probs=71.1
Q ss_pred ccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCcee
Q 013840 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (435)
Q Consensus 11 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~ 90 (435)
..+...|||..|.+-+|.++|.-+|++||.|.+|.+++|+.|+.+..||||+|++.+++++|.-+|.+.. ++- +.|-
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvL-IDD--rRIH 312 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVL-IDD--RRIH 312 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhccee-ecc--ceEE
Confidence 4567899999999999999999999999999999999999999999999999999999999999887753 333 5555
Q ss_pred eecc
Q 013840 91 VKYA 94 (435)
Q Consensus 91 ~~~~ 94 (435)
|.++
T Consensus 313 VDFS 316 (479)
T KOG0415|consen 313 VDFS 316 (479)
T ss_pred eehh
Confidence 5554
No 138
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.72 E-value=4.7e-09 Score=87.08 Aligned_cols=80 Identities=20% Similarity=0.244 Sum_probs=73.6
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 427 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a~ 427 (435)
..+||||.|+...|+++.|.++|-.-|+|..|.|+.++ +++.+ ||||.|+++-....|++.|||..+.++.|.+.+..
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 55899999999999999999999999999999998875 67777 99999999999999999999999999999998765
Q ss_pred CC
Q 013840 428 DN 429 (435)
Q Consensus 428 ~~ 429 (435)
..
T Consensus 86 G~ 87 (267)
T KOG4454|consen 86 GN 87 (267)
T ss_pred CC
Confidence 44
No 139
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.72 E-value=9.3e-09 Score=101.89 Aligned_cols=159 Identities=23% Similarity=0.355 Sum_probs=130.7
Q ss_pred cceEEEecCCCCCCHHHHHHhhhccCCeeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHHcCCCcCCCCcceEEEEec
Q 013840 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181 (435)
Q Consensus 102 ~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~~~~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~a 181 (435)
.++|+++|++..+++.+|+..|..+|.|++|.|-....++...|+||.|.+.+.+-.|+..+.+..+..|. +.+.+.
T Consensus 372 trTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~---~r~glG 448 (975)
T KOG0112|consen 372 TRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGT---HRIGLG 448 (975)
T ss_pred hhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCc---cccccc
Confidence 47899999999999999999999999999999877766666779999999999999999888887654442 111111
Q ss_pred CCHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCCCCCCCCCCCCCccCCCCcCccccCCCCCCCCCCccCcCCCCCCC
Q 013840 182 DTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQG 261 (435)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (435)
..
T Consensus 449 ~~------------------------------------------------------------------------------ 450 (975)
T KOG0112|consen 449 QP------------------------------------------------------------------------------ 450 (975)
T ss_pred cc------------------------------------------------------------------------------
Confidence 00
Q ss_pred CCCcCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCC
Q 013840 262 NAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSG 341 (435)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (435)
T Consensus 451 -------------------------------------------------------------------------------- 450 (975)
T KOG0112|consen 451 -------------------------------------------------------------------------------- 450 (975)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccCCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCC--e
Q 013840 342 GQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGG--K 419 (435)
Q Consensus 342 ~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~g--r 419 (435)
.....+.+++++|+.-+....|...|..||.|..|.+- .|. -||+|.|.++..|+.|+..|-|..|+| +
T Consensus 451 ---kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~----hgq--~yayi~yes~~~aq~a~~~~rgap~G~P~~ 521 (975)
T KOG0112|consen 451 ---KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR----HGQ--PYAYIQYESPPAAQAATHDMRGAPLGGPPR 521 (975)
T ss_pred ---ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecc----cCC--cceeeecccCccchhhHHHHhcCcCCCCCc
Confidence 11145789999999999999999999999999987763 333 389999999999999999999999997 7
Q ss_pred EEEEEEccCCc
Q 013840 420 KLKVQLKRDNK 430 (435)
Q Consensus 420 ~i~v~~a~~~~ 430 (435)
+|.|.|+..-.
T Consensus 522 r~rvdla~~~~ 532 (975)
T KOG0112|consen 522 RLRVDLASPPG 532 (975)
T ss_pred ccccccccCCC
Confidence 89999987654
No 140
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.67 E-value=3.6e-08 Score=83.85 Aligned_cols=140 Identities=19% Similarity=0.392 Sum_probs=107.3
Q ss_pred HHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCceeee----ccCc---hhccccce
Q 013840 32 LAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVK----YADG---ELERLEHK 104 (435)
Q Consensus 32 ~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~~~----~~~~---~~~~~~~~ 104 (435)
...|+.+-.....+++++.. +..++++|+.|.....-.++-..-+++++ ....++.. |-++ +....+.+
T Consensus 117 ~~~f~~~p~L~ktk~v~~~p-~~~~~~~~~~~k~s~a~~k~~~~~~~Kki---~~~~VR~a~gtswedPsl~ew~~~DfR 192 (290)
T KOG0226|consen 117 PVVFSEYPSLVKTKLVRDRP-QPIRPEAFESFKASDALLKAETEKEKKKI---GKPPVRLAAGTSWEDPSLAEWDEDDFR 192 (290)
T ss_pred hhhhccchhhhhhhhhhcCC-CccCcccccCcchhhhhhhhccccccccc---cCcceeeccccccCCcccccCccccce
Confidence 56677666666677777775 78889999999988888887655555432 12334332 2222 22334678
Q ss_pred EEEecCCCCCCHHHHHHhhhccCCeeEEEEecCC-CCCcccEEEEEeCCHHHHHHHHHHHcCCCcCCCCcceE
Q 013840 105 LFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPL 176 (435)
Q Consensus 105 l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~-~~~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l 176 (435)
||.+.|-.+++.+.|-..|.+|-.....++++++ +|+++||+||.|.+..|+.+|+..|+|+. ++.+.+++
T Consensus 193 IfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gky-Vgsrpikl 264 (290)
T KOG0226|consen 193 IFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKY-VGSRPIKL 264 (290)
T ss_pred eecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccc-cccchhHh
Confidence 9999999999999999999999888888888886 89999999999999999999999999975 77665444
No 141
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.62 E-value=1e-07 Score=84.79 Aligned_cols=83 Identities=24% Similarity=0.468 Sum_probs=71.1
Q ss_pred ccccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCC
Q 013840 6 KEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGA 85 (435)
Q Consensus 6 ~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~ 85 (435)
-+.-++....+|||++|-..+++.+|+++|.+||+|..+.+...+ ++|||+|.+.+.|++|.+..-+..++.|
T Consensus 220 lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G- 292 (377)
T KOG0153|consen 220 LEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVING- 292 (377)
T ss_pred cCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecc-
Confidence 344566777899999998899999999999999999999887655 3999999999999999998877666666
Q ss_pred CCceeeeccCc
Q 013840 86 SSPLQVKYADG 96 (435)
Q Consensus 86 ~~~i~~~~~~~ 96 (435)
+.+++.|..+
T Consensus 293 -~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 293 -FRLKIKWGRP 302 (377)
T ss_pred -eEEEEEeCCC
Confidence 7888888876
No 142
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.60 E-value=4.8e-07 Score=67.21 Aligned_cols=81 Identities=21% Similarity=0.257 Sum_probs=64.6
Q ss_pred ceEEEecCCCCCCHHHHHHHHhcc--CceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCC-CCCceee
Q 013840 15 VKLFVGQVPKHMTEAQLLAMFKEF--ALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG-ASSPLQV 91 (435)
Q Consensus 15 ~~l~v~nLp~~~t~~~l~~~f~~~--g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~-~~~~i~~ 91 (435)
+||+|+|||...|.++|.+++... |...-+-+..|..++.+.|||||.|.+.+.|.+..+..+|...-.. ..+...+
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 799999999999999999988663 5566567778888899999999999999999999999999764322 2333344
Q ss_pred eccC
Q 013840 92 KYAD 95 (435)
Q Consensus 92 ~~~~ 95 (435)
.|+.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 5443
No 143
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.58 E-value=8.2e-08 Score=86.98 Aligned_cols=167 Identities=17% Similarity=0.252 Sum_probs=123.8
Q ss_pred cCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCceee
Q 013840 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 91 (435)
Q Consensus 12 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~~ 91 (435)
...+++|++++...+.+.+...++...|......+.........+|++++.|...+.+..+|...... ...+.....-+
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~-~~~~~~~~~dl 164 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSK-VLDGNKGEKDL 164 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhcc-ccccccccCcc
Confidence 35789999999999999989999999998777777666666889999999999999999999765332 22221111111
Q ss_pred eccCc------h---hccccceE-EEecCCCCCCHHHHHHhhhccCCeeEEEEecCC-CCCcccEEEEEeCCHHHHHHHH
Q 013840 92 KYADG------E---LERLEHKL-FIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAAL 160 (435)
Q Consensus 92 ~~~~~------~---~~~~~~~l-~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~-~~~~~g~afV~f~~~e~a~~a~ 160 (435)
.+... . ......++ ++.+++..+++++|++.|..+|.|..+.+..+. ++..+|++||.|.+..++..++
T Consensus 165 ~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~ 244 (285)
T KOG4210|consen 165 NTRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLAL 244 (285)
T ss_pred cccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHh
Confidence 11111 0 01112344 499999999999999999999999999998775 8889999999999999999998
Q ss_pred HHHcCCCcCCCCcceEEEEecCC
Q 013840 161 EAINGKHKMEGSSVPLVVKWADT 183 (435)
Q Consensus 161 ~~l~~~~~~~g~~~~l~v~~a~~ 183 (435)
.. .+.. +.++. +.+.....
T Consensus 245 ~~-~~~~-~~~~~--~~~~~~~~ 263 (285)
T KOG4210|consen 245 ND-QTRS-IGGRP--LRLEEDEP 263 (285)
T ss_pred hc-ccCc-ccCcc--cccccCCC
Confidence 75 4443 55553 45554444
No 144
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.53 E-value=6.2e-08 Score=91.57 Aligned_cols=71 Identities=20% Similarity=0.425 Sum_probs=64.7
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEE
Q 013840 347 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLK 422 (435)
Q Consensus 347 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~ 422 (435)
....+|+|-|||..|+.++|+.+|+.||+|..|..-+. .+|..||+|-+..+|++|+++|+++++.|++|+
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 35689999999999999999999999999999766443 478999999999999999999999999999988
No 145
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.41 E-value=1.4e-06 Score=61.26 Aligned_cols=68 Identities=21% Similarity=0.315 Sum_probs=48.1
Q ss_pred ceEEEeCCCCCCCHH----HHHHHhhcCC-cEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEE
Q 013840 350 ANLFIYHIPQEFGDQ----ELGNAFQAFG-RVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 424 (435)
Q Consensus 350 ~~v~V~nLp~~~t~~----~L~~~F~~fG-~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~ 424 (435)
+.|+|.|||.+.+.. -|+.++..+| .|.+|. .+.|+|.|.+.+.|.+|.+.|+|-.+.|++|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 469999999988765 5666676777 566662 2579999999999999999999999999999999
Q ss_pred Ecc
Q 013840 425 LKR 427 (435)
Q Consensus 425 ~a~ 427 (435)
|..
T Consensus 73 ~~~ 75 (90)
T PF11608_consen 73 FSP 75 (90)
T ss_dssp SS-
T ss_pred EcC
Confidence 984
No 146
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.38 E-value=4.6e-07 Score=81.46 Aligned_cols=84 Identities=27% Similarity=0.483 Sum_probs=78.0
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCcEEE--------EEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCC
Q 013840 347 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLS--------AKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGG 418 (435)
Q Consensus 347 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~--------v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~g 418 (435)
....+|||-+||..+++++|.++|.+.|.|.. |+|.++++|++++|-|.|.|.++..|++|+..++++.+.|
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 35679999999999999999999999998854 6788899999999999999999999999999999999999
Q ss_pred eEEEEEEccCCc
Q 013840 419 KKLKVQLKRDNK 430 (435)
Q Consensus 419 r~i~v~~a~~~~ 430 (435)
..|+|.+|..+.
T Consensus 144 n~ikvs~a~~r~ 155 (351)
T KOG1995|consen 144 NTIKVSLAERRT 155 (351)
T ss_pred CCchhhhhhhcc
Confidence 999999998776
No 147
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.37 E-value=3.5e-07 Score=82.52 Aligned_cols=64 Identities=16% Similarity=0.076 Sum_probs=53.7
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeC
Q 013840 349 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLG 417 (435)
Q Consensus 349 ~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~ 417 (435)
.+|++|.+|+..|-..++.+.|..+|+|...++.- +...-+|.|+|........|+.. +|+.+.
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as----k~~s~~c~~sf~~qts~~halr~-~gre~k 214 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHTAS----KSRSSSCSHSFRKQTSSKHALRS-HGRERK 214 (479)
T ss_pred Hhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc----cCCCcchhhhHhhhhhHHHHHHh-cchhhh
Confidence 38899999999999999999999999999887742 33345788999999998889885 787765
No 148
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.37 E-value=7.6e-07 Score=84.13 Aligned_cols=68 Identities=22% Similarity=0.323 Sum_probs=56.8
Q ss_pred cCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHh
Q 013840 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76 (435)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l 76 (435)
+......+|||+|||.+++.++|+++|+.||+|+...|......++..+||||+|.+.++++.||++.
T Consensus 283 ~~~~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As 350 (419)
T KOG0116|consen 283 EPRADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS 350 (419)
T ss_pred ceeecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC
Confidence 33344556999999999999999999999999999887665433445589999999999999999874
No 149
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.34 E-value=2e-06 Score=75.02 Aligned_cols=76 Identities=22% Similarity=0.429 Sum_probs=68.7
Q ss_pred cceEEEecCCCCCCHHHHHHhhhccCCeeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHHcCCCcCCCCcceEEE
Q 013840 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (435)
Q Consensus 102 ~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~~~~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v 178 (435)
...|.|.|||+.++.++|+++|..||.+..+.+-.++.|.+.|.|-|.|...+||..|++.+++. .++|+.+.+.+
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv-~ldG~~mk~~~ 158 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGV-ALDGRPMKIEI 158 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCc-ccCCceeeeEE
Confidence 46799999999999999999999999999999999999999999999999999999999999994 58888744433
No 150
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.33 E-value=0.00019 Score=64.26 Aligned_cols=71 Identities=20% Similarity=0.330 Sum_probs=61.0
Q ss_pred cceEEEecCCCCCCHHHHHHhhhccC--CeeEEEEecCC-CCCcccEEEEEeCCHHHHHHHHHHHcCCCcCCCCc
Q 013840 102 EHKLFIGMLPKNVSEAEVSALFSIYG--TIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSS 173 (435)
Q Consensus 102 ~~~l~v~~lp~~~t~~~l~~~f~~~g--~i~~v~~~~~~-~~~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~ 173 (435)
..++||+||-+.+|.++|.+.+...| .+.+++++.+. +|+++|||+|-..+....++.++.|-.+. +.|+.
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~-iHGQ~ 153 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKT-IHGQS 153 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccce-ecCCC
Confidence 45899999999999999999998887 56777777765 78999999999999999999999888776 67765
No 151
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.31 E-value=1.2e-07 Score=86.31 Aligned_cols=155 Identities=24% Similarity=0.399 Sum_probs=116.4
Q ss_pred ceEEEecCCCCCCHHHHHHHHhccC-ceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCceeeec
Q 013840 15 VKLFVGQVPKHMTEAQLLAMFKEFA-LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKY 93 (435)
Q Consensus 15 ~~l~v~nLp~~~t~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~~~~ 93 (435)
.++|++||.+.++.++|+.+|..-- ++..-.+++ .||+||.+.+...|.+|++.++++.-+-| ..+.+..
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k-------~gyafvd~pdq~wa~kaie~~sgk~elqG--kr~e~~~ 72 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK-------SGYAFVDCPDQQWANKAIETLSGKVELQG--KRQEVEH 72 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee-------cceeeccCCchhhhhhhHHhhchhhhhcC--ceeeccc
Confidence 4689999999999999999997631 111112222 35999999999999999999999866655 5566655
Q ss_pred cCchhccccceEEEecCCCCCCHHHHHHhhhccCCeeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHHcCCCcCCCCc
Q 013840 94 ADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSS 173 (435)
Q Consensus 94 ~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~~~~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~ 173 (435)
+-++..+ .+.+-++|+|+...++-+..++..||.+++|....... -.-..-|+|...+.++.|+..++|..+ ....
T Consensus 73 sv~kkqr-srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~--etavvnvty~~~~~~~~ai~kl~g~Q~-en~~ 148 (584)
T KOG2193|consen 73 SVPKKQR-SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDS--ETAVVNVTYSAQQQHRQAIHKLNGPQL-ENQH 148 (584)
T ss_pred hhhHHHH-hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccch--HHHHHHHHHHHHHHHHHHHHhhcchHh-hhhh
Confidence 5544433 45689999999999999999999999999987744321 133456789999999999999999874 3333
Q ss_pred ceEEEEecCCH
Q 013840 174 VPLVVKWADTE 184 (435)
Q Consensus 174 ~~l~v~~a~~~ 184 (435)
+.+.|-...
T Consensus 149 --~k~~YiPde 157 (584)
T KOG2193|consen 149 --LKVGYIPDE 157 (584)
T ss_pred --hhcccCchh
Confidence 566665554
No 152
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.24 E-value=1.5e-06 Score=66.31 Aligned_cols=70 Identities=21% Similarity=0.429 Sum_probs=43.9
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCc-----eeCCeEEEE
Q 013840 349 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGC-----QLGGKKLKV 423 (435)
Q Consensus 349 ~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~-----~l~gr~i~v 423 (435)
++.|+|.|++..++.++|++.|+.||.|..|.+.... ..|+|.|.+++.|+.|+..+.-. .+.+..+.+
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~ 74 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTL 74 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEE
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEE
Confidence 3689999999999999999999999999999986542 26999999999999999876543 455555444
Q ss_pred E
Q 013840 424 Q 424 (435)
Q Consensus 424 ~ 424 (435)
.
T Consensus 75 ~ 75 (105)
T PF08777_consen 75 E 75 (105)
T ss_dssp E
T ss_pred E
Confidence 3
No 153
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.18 E-value=2.5e-06 Score=74.71 Aligned_cols=74 Identities=19% Similarity=0.281 Sum_probs=67.6
Q ss_pred cccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCc
Q 013840 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKT 81 (435)
Q Consensus 7 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~ 81 (435)
+.....+.+.+||+|+.+.+|.+++...|..||.|..+.+.+|+..+.++|||||+|.+.+.+..++. |++..+
T Consensus 94 ~~~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i 167 (231)
T KOG4209|consen 94 ERQKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEI 167 (231)
T ss_pred hhhhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccc
Confidence 34667888999999999999999999999999999999999999888899999999999999999998 887753
No 154
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.12 E-value=4.2e-06 Score=81.34 Aligned_cols=82 Identities=23% Similarity=0.430 Sum_probs=67.8
Q ss_pred ccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCC---CCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCC
Q 013840 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKT---TRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (435)
Q Consensus 11 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~---~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~ 87 (435)
+...+.|||+||++.++++.|...|.+||+|..+++.+-+. ..+.+-|+||.|.+-.||++|++.|+|..+ +..
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv---~~~ 247 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIV---MEY 247 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceee---eee
Confidence 34568999999999999999999999999999999988432 224556999999999999999999999754 336
Q ss_pred ceeeeccC
Q 013840 88 PLQVKYAD 95 (435)
Q Consensus 88 ~i~~~~~~ 95 (435)
.+++.|..
T Consensus 248 e~K~gWgk 255 (877)
T KOG0151|consen 248 EMKLGWGK 255 (877)
T ss_pred eeeecccc
Confidence 66666664
No 155
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.87 E-value=6.5e-06 Score=74.55 Aligned_cols=142 Identities=14% Similarity=0.171 Sum_probs=104.7
Q ss_pred eEEEecCCCCCCHHHHHHHHhccCceeEEEEEe---cCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCceeee
Q 013840 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIK---DKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVK 92 (435)
Q Consensus 16 ~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~---~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~~~ 92 (435)
.|.|.||.+++|-+++..+|.-.|.|.+++++. |.........|||.|.+.+++..| +.|.+..+++. -.|.+.
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~va-QhLtntvfvdr--aliv~p 85 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVA-QHLTNTVFVDR--ALIVRP 85 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHH-hhhccceeeee--eEEEEe
Confidence 899999999999999999999999999999876 233345566899999999999988 56666555443 222222
Q ss_pred ccCchhcc--------------------------------------------------------ccceEEEecCCCCCCH
Q 013840 93 YADGELER--------------------------------------------------------LEHKLFIGMLPKNVSE 116 (435)
Q Consensus 93 ~~~~~~~~--------------------------------------------------------~~~~l~v~~lp~~~t~ 116 (435)
+.+.-... ..++++|.+|+..+..
T Consensus 86 ~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l 165 (479)
T KOG4676|consen 86 YGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAIL 165 (479)
T ss_pred cCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcc
Confidence 22211110 0257889999999999
Q ss_pred HHHHHhhhccCCeeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHH
Q 013840 117 AEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAI 163 (435)
Q Consensus 117 ~~l~~~f~~~g~i~~v~~~~~~~~~~~g~afV~f~~~e~a~~a~~~l 163 (435)
.++.+.|..+|.|...++-... ...+|-+.|........|+...
T Consensus 166 ~e~~e~f~r~Gev~ya~~ask~---~s~~c~~sf~~qts~~halr~~ 209 (479)
T KOG4676|consen 166 PESGESFERKGEVSYAHTASKS---RSSSCSHSFRKQTSSKHALRSH 209 (479)
T ss_pred hhhhhhhhhcchhhhhhhhccC---CCcchhhhHhhhhhHHHHHHhc
Confidence 9999999999998776664332 3457778998888877777643
No 156
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.87 E-value=2.7e-06 Score=77.69 Aligned_cols=73 Identities=26% Similarity=0.342 Sum_probs=59.8
Q ss_pred eEEEeCCCCCCCHHHHHHHhhcCCcEEEEEE-EeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 013840 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKV-FVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 427 (435)
Q Consensus 351 ~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i-~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a~ 427 (435)
.+-|+|+|...-++.|..+...||.+..|.. ..+.++ -..=|+|.+.+.++.|+..++|..+.+..+++.|--
T Consensus 82 k~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~et----avvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiP 155 (584)
T KOG2193|consen 82 KIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSET----AVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIP 155 (584)
T ss_pred hhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHH----HHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCc
Confidence 3669999999999999999999999999865 344332 233478999999999999999999998888887643
No 157
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.82 E-value=5.4e-05 Score=57.80 Aligned_cols=59 Identities=17% Similarity=0.216 Sum_probs=39.4
Q ss_pred ceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCC
Q 013840 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNK 79 (435)
Q Consensus 15 ~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~ 79 (435)
+.|.|.|++..++-++|++.|+.||.|..|.+..... .|||.|.+.++|++|++.+...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHHHHHHhc
Confidence 5789999999999999999999999998887755432 8999999999999999987543
No 158
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.73 E-value=0.00025 Score=50.17 Aligned_cols=67 Identities=16% Similarity=0.311 Sum_probs=43.4
Q ss_pred ceEEEecCCCCCCHHHHH----HHHhccC-ceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCce
Q 013840 15 VKLFVGQVPKHMTEAQLL----AMFKEFA-LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (435)
Q Consensus 15 ~~l~v~nLp~~~t~~~l~----~~f~~~g-~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i 89 (435)
..|+|.|||-+.+...|+ +++.-|| .|.+| ..+.|+|.|.+.+.|.+|.+.|+|..+++ ..|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----------~~~tAilrF~~~~~A~RA~KRmegEdVfG---~kI 69 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----------SGGTAILRFPNQEFAERAQKRMEGEDVFG---NKI 69 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSS---S--
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----------eCCEEEEEeCCHHHHHHHHHhhccccccc---ceE
Confidence 579999999999987764 5555676 44333 12589999999999999999999987643 566
Q ss_pred eeecc
Q 013840 90 QVKYA 94 (435)
Q Consensus 90 ~~~~~ 94 (435)
.+++.
T Consensus 70 ~v~~~ 74 (90)
T PF11608_consen 70 SVSFS 74 (90)
T ss_dssp EEESS
T ss_pred EEEEc
Confidence 66655
No 159
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.69 E-value=0.00013 Score=48.04 Aligned_cols=52 Identities=19% Similarity=0.392 Sum_probs=42.6
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHH
Q 013840 350 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 408 (435)
Q Consensus 350 ~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~ 408 (435)
+.|-|.+.+... .+++..+|..||+|..+.+... .-+.+|.|.++.+|++|+
T Consensus 2 ~wI~V~Gf~~~~-~~~vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDL-AEEVLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchH-HHHHHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 568899988665 4667779999999999988622 348999999999999985
No 160
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.59 E-value=2.5e-05 Score=67.21 Aligned_cols=63 Identities=14% Similarity=0.232 Sum_probs=54.3
Q ss_pred HHHHHHhh-cCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 013840 364 QELGNAFQ-AFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 427 (435)
Q Consensus 364 ~~L~~~F~-~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a~ 427 (435)
+||...|+ +||+|..+.|-.+. .-...|-++|.|...++|++|++.||+.++.|++|...+..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 67788887 99999999776553 34567889999999999999999999999999999988754
No 161
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.59 E-value=0.00017 Score=64.19 Aligned_cols=80 Identities=20% Similarity=0.374 Sum_probs=62.0
Q ss_pred ceEEEeCCCCCCCHHH------HHHHhhcCCcEEEEEEEeeCCC-CCcce--EEEEEeCCHHHHHHHHHhcCCceeCCeE
Q 013840 350 ANLFIYHIPQEFGDQE------LGNAFQAFGRVLSAKVFVDKAT-GVSKC--FGFVSYESPASAQNAIAMMNGCQLGGKK 420 (435)
Q Consensus 350 ~~v~V~nLp~~~t~~~------L~~~F~~fG~v~~v~i~~~~~~-g~~~g--~afV~F~~~~~A~~A~~~l~g~~l~gr~ 420 (435)
.-|||-+||..+-.|+ =.++|.+||.|+.|.|-+.-.. +-..+ -.+|.|.+-|||.+|+...+|..++||.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 4589999998886665 3578999999999887543111 11112 1499999999999999999999999999
Q ss_pred EEEEEccCC
Q 013840 421 LKVQLKRDN 429 (435)
Q Consensus 421 i~v~~a~~~ 429 (435)
|+..+...|
T Consensus 195 lkatYGTTK 203 (480)
T COG5175 195 LKATYGTTK 203 (480)
T ss_pred EeeecCchH
Confidence 999987654
No 162
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.54 E-value=0.00032 Score=66.91 Aligned_cols=76 Identities=22% Similarity=0.301 Sum_probs=62.3
Q ss_pred CCceEEEeCCCCCC------CHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeC-CeE
Q 013840 348 PGANLFIYHIPQEF------GDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLG-GKK 420 (435)
Q Consensus 348 ~~~~v~V~nLp~~~------t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~-gr~ 420 (435)
-..+|+|.|+|--- -..-|..+|+++|++....++.+. .|..+||.|++|++..+|..|++.|||+.|. +++
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e-~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDE-EGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCc-cCCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 45789999998421 123567789999999999999886 5669999999999999999999999999986 466
Q ss_pred EEEE
Q 013840 421 LKVQ 424 (435)
Q Consensus 421 i~v~ 424 (435)
..|.
T Consensus 136 f~v~ 139 (698)
T KOG2314|consen 136 FFVR 139 (698)
T ss_pred EEee
Confidence 6654
No 163
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.53 E-value=0.00025 Score=46.57 Aligned_cols=53 Identities=21% Similarity=0.390 Sum_probs=42.4
Q ss_pred CceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHH
Q 013840 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73 (435)
Q Consensus 14 ~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al 73 (435)
++.|-|.|.+.+.. ++|...|..||+|..+.+-. ..-..||+|.+..+|++||
T Consensus 1 ~~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 35788999998777 55666899999999877642 2239999999999999985
No 164
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.50 E-value=0.00031 Score=61.46 Aligned_cols=82 Identities=21% Similarity=0.304 Sum_probs=62.2
Q ss_pred CCCCceEEEeCC--CCCCC---HHHHHHHhhcCCcEEEEEEEeeCCCCCc-ceEEEEEeCCHHHHHHHHHhcCCceeCCe
Q 013840 346 GPPGANLFIYHI--PQEFG---DQELGNAFQAFGRVLSAKVFVDKATGVS-KCFGFVSYESPASAQNAIAMMNGCQLGGK 419 (435)
Q Consensus 346 ~~~~~~v~V~nL--p~~~t---~~~L~~~F~~fG~v~~v~i~~~~~~g~~-~g~afV~F~~~~~A~~A~~~l~g~~l~gr 419 (435)
...+.+|.++|+ +..+. ++++++.|.+||.|..|.|...+..-.. ----||+|.+.++|.+|+-.|||+.|+||
T Consensus 278 ~~ptkvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr 357 (378)
T KOG1996|consen 278 KCPTKVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGR 357 (378)
T ss_pred hcchHHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecce
Confidence 334566777877 44454 4588999999999999988765421111 11269999999999999999999999999
Q ss_pred EEEEEEcc
Q 013840 420 KLKVQLKR 427 (435)
Q Consensus 420 ~i~v~~a~ 427 (435)
.+...|-.
T Consensus 358 ~v~A~Fyn 365 (378)
T KOG1996|consen 358 VVSACFYN 365 (378)
T ss_pred eeeheecc
Confidence 99877643
No 165
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.40 E-value=0.00078 Score=50.57 Aligned_cols=72 Identities=21% Similarity=0.375 Sum_probs=52.6
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEE-------------EEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCc
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAK-------------VFVDKATGVSKCFGFVSYESPASAQNAIAMMNGC 414 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~-------------i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~ 414 (435)
..+-|.|=+.|.. ....+.++|++||+|.... +... ..+--|+|.++.+|.+||+. ||.
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~------~NWi~I~Y~~~~~A~rAL~~-NG~ 76 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSG------GNWIHITYDNPLSAQRALQK-NGT 76 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CC------TTEEEEEESSHHHHHHHHTT-TTE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCC------CCEEEEECCCHHHHHHHHHh-CCe
Confidence 3466888899887 5778999999999998774 2222 34899999999999999997 999
Q ss_pred eeCCe-EEEEEEcc
Q 013840 415 QLGGK-KLKVQLKR 427 (435)
Q Consensus 415 ~l~gr-~i~v~~a~ 427 (435)
.|.|. -+-|.+.+
T Consensus 77 i~~g~~mvGV~~~~ 90 (100)
T PF05172_consen 77 IFSGSLMVGVKPCD 90 (100)
T ss_dssp EETTCEEEEEEE-H
T ss_pred EEcCcEEEEEEEcH
Confidence 99985 45566653
No 166
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.39 E-value=0.00028 Score=63.96 Aligned_cols=84 Identities=20% Similarity=0.301 Sum_probs=71.3
Q ss_pred cCccCCceEEEecCCCCCCHHHHHHHHhccCcee--------EEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCC
Q 013840 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVD--------EVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKK 80 (435)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~--------~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~ 80 (435)
.......+|||-+||..+++.+|.++|..+|.|. .|++.+++.|.+.+|-|.|.|.+...|+.|+.-+++..
T Consensus 61 ~~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkd 140 (351)
T KOG1995|consen 61 ADKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKD 140 (351)
T ss_pred ccccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccc
Confidence 3356678999999999999999999999999775 37788899999999999999999999999999988887
Q ss_pred cCCCCCCceeeeccC
Q 013840 81 TLPGASSPLQVKYAD 95 (435)
Q Consensus 81 ~~~~~~~~i~~~~~~ 95 (435)
+. ..+|++..+.
T Consensus 141 f~---gn~ikvs~a~ 152 (351)
T KOG1995|consen 141 FC---GNTIKVSLAE 152 (351)
T ss_pred cc---CCCchhhhhh
Confidence 52 3666665554
No 167
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.37 E-value=0.00011 Score=63.28 Aligned_cols=73 Identities=21% Similarity=0.347 Sum_probs=61.6
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCC--------CC----cceEEEEEeCCHHHHHHHHHhcCCce
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKAT--------GV----SKCFGFVSYESPASAQNAIAMMNGCQ 415 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~--------g~----~~g~afV~F~~~~~A~~A~~~l~g~~ 415 (435)
..-+||++|||..+.-..|+++|+.||+|=+|.+.+.... |. .-..|+|+|.+-..|.+....||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 3468999999999999999999999999999988764322 22 22248999999999999999999999
Q ss_pred eCCeE
Q 013840 416 LGGKK 420 (435)
Q Consensus 416 l~gr~ 420 (435)
|+|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99974
No 168
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.30 E-value=0.0015 Score=52.07 Aligned_cols=75 Identities=29% Similarity=0.496 Sum_probs=53.1
Q ss_pred cCCCCceEEEeCCC-----CCCCH----HHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCce
Q 013840 345 EGPPGANLFIYHIP-----QEFGD----QELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQ 415 (435)
Q Consensus 345 ~~~~~~~v~V~nLp-----~~~t~----~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~ 415 (435)
.+|+..||.|+=+. ...-. .+|.+.|..||+++=+++.-+ .-+|.|.+-+.|.+|+. |+|..
T Consensus 23 ~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~ 93 (146)
T PF08952_consen 23 QGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQ 93 (146)
T ss_dssp ---TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSE
T ss_pred cCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcE
Confidence 35566788887554 11222 378888999999988877543 47999999999999998 59999
Q ss_pred eCCeEEEEEEccC
Q 013840 416 LGGKKLKVQLKRD 428 (435)
Q Consensus 416 l~gr~i~v~~a~~ 428 (435)
+.|+.|+|++..+
T Consensus 94 v~g~~l~i~LKtp 106 (146)
T PF08952_consen 94 VNGRTLKIRLKTP 106 (146)
T ss_dssp ETTEEEEEEE---
T ss_pred ECCEEEEEEeCCc
Confidence 9999999998643
No 169
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.23 E-value=0.00036 Score=62.55 Aligned_cols=72 Identities=17% Similarity=0.287 Sum_probs=62.0
Q ss_pred CccCCceEEEecCCCCCCHHHHHHHHhccC--ceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCc
Q 013840 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFA--LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKT 81 (435)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g--~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~ 81 (435)
.+....++||+||-|++|++||.+.+...| .+.+++++.++..+.++|||.|..-+...+++-++.|-.+.+
T Consensus 76 ~~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~i 149 (498)
T KOG4849|consen 76 SEGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTI 149 (498)
T ss_pred ccCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhccccee
Confidence 344557899999999999999999998876 567788899998999999999999999999999988765543
No 170
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.22 E-value=0.0011 Score=57.18 Aligned_cols=62 Identities=26% Similarity=0.372 Sum_probs=57.1
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcC
Q 013840 350 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMN 412 (435)
Q Consensus 350 ~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~ 412 (435)
..|+|.||...++.+.|.+-|+.||+|.+..+..|. .+++++-++|.|...-.|.+|...+.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHHhc
Confidence 579999999999999999999999999998887774 79999999999999999999998874
No 171
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.17 E-value=0.0012 Score=58.97 Aligned_cols=83 Identities=11% Similarity=0.366 Sum_probs=61.0
Q ss_pred CCceEEEecCCCCCCHHHH------HHHHhccCceeEEEEEecC-CCCCccceE--EEEeCCHHHHHHHHHHhcCCCcCC
Q 013840 13 ERVKLFVGQVPKHMTEAQL------LAMFKEFALVDEVNIIKDK-TTRASRGCC--FVICPSRQEADKAVNACHNKKTLP 83 (435)
Q Consensus 13 ~~~~l~v~nLp~~~t~~~l------~~~f~~~g~i~~~~~~~~~-~~~~~~g~a--fV~f~~~e~a~~al~~l~~~~~~~ 83 (435)
....+||-+||+.+..+++ .++|..||.|..|.+-+.- ......+.+ ||.|.+.|||.+||...+|. +++
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs-~~D 191 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGS-LLD 191 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccc-ccc
Confidence 3467899999999877773 5899999999865442211 112233445 99999999999999999887 566
Q ss_pred CCCCceeeeccCchh
Q 013840 84 GASSPLQVKYADGEL 98 (435)
Q Consensus 84 ~~~~~i~~~~~~~~~ 98 (435)
| +.++..|-..+.
T Consensus 192 G--r~lkatYGTTKY 204 (480)
T COG5175 192 G--RVLKATYGTTKY 204 (480)
T ss_pred C--ceEeeecCchHH
Confidence 6 888887765443
No 172
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.14 E-value=0.00054 Score=63.32 Aligned_cols=67 Identities=21% Similarity=0.373 Sum_probs=56.5
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEee---CC--CCCc--------ceEEEEEeCCHHHHHHHHHhcCCc
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVD---KA--TGVS--------KCFGFVSYESPASAQNAIAMMNGC 414 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~---~~--~g~~--------~g~afV~F~~~~~A~~A~~~l~g~ 414 (435)
++++|.+.|||.+-.-+.|.++|+.+|.|.+|+|... ++ .|.+ +-+|+|+|.+.+.|.+|.+.|+..
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 7799999999999989999999999999999999754 22 2222 446899999999999999988644
No 173
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.11 E-value=0.00052 Score=63.41 Aligned_cols=72 Identities=14% Similarity=0.209 Sum_probs=59.4
Q ss_pred ccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEec---CCC--CC--------ccceEEEEeCCHHHHHHHHH
Q 013840 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKD---KTT--RA--------SRGCCFVICPSRQEADKAVN 74 (435)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~---~~~--~~--------~~g~afV~f~~~e~a~~al~ 74 (435)
.+++.++++|.+.|||-+-..+.|.++|+.+|.|..|+|.+- ... +. .+-+|+|+|...+.|.+|.+
T Consensus 225 ~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e 304 (484)
T KOG1855|consen 225 DEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARE 304 (484)
T ss_pred cccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHH
Confidence 445578999999999999999999999999999999998764 111 11 24589999999999999998
Q ss_pred HhcCC
Q 013840 75 ACHNK 79 (435)
Q Consensus 75 ~l~~~ 79 (435)
.++..
T Consensus 305 ~~~~e 309 (484)
T KOG1855|consen 305 LLNPE 309 (484)
T ss_pred hhchh
Confidence 88654
No 174
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.95 E-value=0.0017 Score=62.25 Aligned_cols=72 Identities=19% Similarity=0.307 Sum_probs=59.2
Q ss_pred cceEEEecCCCC--CCH----HHHHHhhhccCCeeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHHcCCCcCCCCc
Q 013840 102 EHKLFIGMLPKN--VSE----AEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSS 173 (435)
Q Consensus 102 ~~~l~v~~lp~~--~t~----~~l~~~f~~~g~i~~v~~~~~~~~~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~ 173 (435)
+.+|.|-|+|.- ... ..|.++|+++|++.+..++.+..|..+|+.|++|++..+|..|++.|||..+...+.
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 567889898752 222 346688999999999999988877799999999999999999999999988555443
No 175
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.94 E-value=0.00079 Score=58.06 Aligned_cols=72 Identities=13% Similarity=0.181 Sum_probs=57.4
Q ss_pred CCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCC--------CCccc----eEEEEeCCHHHHHHHHHHhcCCC
Q 013840 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTT--------RASRG----CCFVICPSRQEADKAVNACHNKK 80 (435)
Q Consensus 13 ~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~--------~~~~g----~afV~f~~~e~a~~al~~l~~~~ 80 (435)
..-.||+++||+.++...|+++|+.||.|-.|.+-....+ +.... -|+|+|.+...|+.+...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4468999999999999999999999999987766553332 12222 38999999999999999999987
Q ss_pred cCCC
Q 013840 81 TLPG 84 (435)
Q Consensus 81 ~~~~ 84 (435)
+.+.
T Consensus 153 Iggk 156 (278)
T KOG3152|consen 153 IGGK 156 (278)
T ss_pred cCCC
Confidence 5443
No 176
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.91 E-value=0.0068 Score=40.80 Aligned_cols=54 Identities=20% Similarity=0.345 Sum_probs=45.0
Q ss_pred CceEEEecCCCCCCHHHHHHHHhcc----CceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHh
Q 013840 14 RVKLFVGQVPKHMTEAQLLAMFKEF----ALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76 (435)
Q Consensus 14 ~~~l~v~nLp~~~t~~~l~~~f~~~----g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l 76 (435)
-.+|+|+|+. .++.++|+.+|..| ++ ..|..+.|. .|=|.|.+.+.|.+||.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~-~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGP-FRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCC-ceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 4589999995 68889999999999 64 347777776 5789999999999999764
No 177
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.88 E-value=0.0057 Score=43.41 Aligned_cols=56 Identities=21% Similarity=0.381 Sum_probs=42.8
Q ss_pred CCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhc
Q 013840 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACH 77 (435)
Q Consensus 13 ~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~ 77 (435)
.....+|. .|..+...||.++|+.||.|. |..+.|. .|||...+.+.|..++..+.
T Consensus 8 RdHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 8 RDHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT-------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp GCCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT-------EEEEEECCCHHHHHHHHHHT
T ss_pred cceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC-------cEEEEeecHHHHHHHHHHhc
Confidence 33455554 999999999999999999976 6666654 89999999999999998874
No 178
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.81 E-value=0.0034 Score=54.32 Aligned_cols=88 Identities=17% Similarity=0.218 Sum_probs=72.3
Q ss_pred HHHHHHHhcCCCcCCCCCCceeeeccCchhccccceEEEecCCCCCCHHHHHHhhhccCCeeEEEEecCCCCCcccEEEE
Q 013840 69 ADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFL 148 (435)
Q Consensus 69 a~~al~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~~~~~~g~afV 148 (435)
|..|-..|.+. +..+ +.+++.|+.- ..|+|.||..-++.+.+.+-|+.||+|+...+.-+..++..+-++|
T Consensus 7 ae~ak~eLd~~-~~~~--~~lr~rfa~~------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v 77 (275)
T KOG0115|consen 7 AEIAKRELDGR-FPKG--RSLRVRFAMH------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIV 77 (275)
T ss_pred HHHHHHhcCCC-CCCC--CceEEEeecc------ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchh
Confidence 45555566665 3433 7788877753 3699999999999999999999999999888888878888999999
Q ss_pred EeCCHHHHHHHHHHHcC
Q 013840 149 KYETKEQALAALEAING 165 (435)
Q Consensus 149 ~f~~~e~a~~a~~~l~~ 165 (435)
.|...-.|.+|...++.
T Consensus 78 ~~~~k~~a~~a~rr~~~ 94 (275)
T KOG0115|consen 78 EFAKKPNARKAARRCRE 94 (275)
T ss_pred hhhcchhHHHHHHHhcc
Confidence 99999999999988743
No 179
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.73 E-value=0.0061 Score=45.77 Aligned_cols=81 Identities=17% Similarity=0.210 Sum_probs=49.1
Q ss_pred cCCceEEEecCCCCCCHHHHHHHHhccCceeEEE-EEec------CCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCC
Q 013840 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVN-IIKD------KTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (435)
Q Consensus 12 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~-~~~~------~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~ 84 (435)
...+.|.|-|.|+. ....|.+.|++||.|.+.. +.++ ........+..|+|++..+|++||+. ||.. +.|
T Consensus 4 ~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i-~~g 80 (100)
T PF05172_consen 4 DSETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTI-FSG 80 (100)
T ss_dssp GGCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEE-ETT
T ss_pred cCCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeE-EcC
Confidence 34567899999988 4577888899999998764 0000 00112334999999999999999954 5653 433
Q ss_pred CCCceeeeccCc
Q 013840 85 ASSPLQVKYADG 96 (435)
Q Consensus 85 ~~~~i~~~~~~~ 96 (435)
...+.+++.++
T Consensus 81 -~~mvGV~~~~~ 91 (100)
T PF05172_consen 81 -SLMVGVKPCDP 91 (100)
T ss_dssp -CEEEEEEE-HH
T ss_pred -cEEEEEEEcHH
Confidence 24455666543
No 180
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.59 E-value=0.013 Score=45.97 Aligned_cols=74 Identities=16% Similarity=0.331 Sum_probs=56.9
Q ss_pred CCCCceEEEeCCCCCC-CHHHH---HHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEE
Q 013840 346 GPPGANLFIYHIPQEF-GDQEL---GNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKL 421 (435)
Q Consensus 346 ~~~~~~v~V~nLp~~~-t~~~L---~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i 421 (435)
+++-.||.|+=|..++ ..+|| ...++.||+|.+|... |+ --|.|.|.+...|-.|+.+++. ..-|..+
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-----Gr--qsavVvF~d~~SAC~Av~Af~s-~~pgtm~ 154 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-----GR--QSAVVVFKDITSACKAVSAFQS-RAPGTMF 154 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-----CC--ceEEEEehhhHHHHHHHHhhcC-CCCCceE
Confidence 4466789998777665 23444 4556889999999874 32 2599999999999999999866 6678889
Q ss_pred EEEEcc
Q 013840 422 KVQLKR 427 (435)
Q Consensus 422 ~v~~a~ 427 (435)
.++|..
T Consensus 155 qCsWqq 160 (166)
T PF15023_consen 155 QCSWQQ 160 (166)
T ss_pred Eeeccc
Confidence 998854
No 181
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.57 E-value=0.016 Score=39.07 Aligned_cols=55 Identities=13% Similarity=0.215 Sum_probs=45.1
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhcC---CcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhc
Q 013840 349 GANLFIYHIPQEFGDQELGNAFQAF---GRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 411 (435)
Q Consensus 349 ~~~v~V~nLp~~~t~~~L~~~F~~f---G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l 411 (435)
...|+|+|++ +++.+|++.+|..| ....+|..+-|. -|=|.|.+.+.|.+|+.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 3579999986 58899999999998 235678777663 4889999999999999865
No 182
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.45 E-value=0.011 Score=41.95 Aligned_cols=56 Identities=18% Similarity=0.378 Sum_probs=42.3
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcC
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMN 412 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~ 412 (435)
...+.+|. .|..|-..||.++|+.||.|.=-.| .| + -|||...+++.|..|+..+.
T Consensus 8 RdHVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi-~d--T-----SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 8 RDHVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWI-ND--T-----SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp GCCEEEEE---TT--HHHHHHHCCCCCCEEEEEE-CT--T-----EEEEEECCCHHHHHHHHHHT
T ss_pred cceEEEEe-CchHhhhhhHHHHhccCCcEEEEEE-cC--C-----cEEEEeecHHHHHHHHHHhc
Confidence 34677777 9999999999999999998864444 33 2 59999999999999988774
No 183
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.42 E-value=0.0029 Score=61.03 Aligned_cols=80 Identities=24% Similarity=0.258 Sum_probs=62.8
Q ss_pred CccCCceEEEecCCCCCCHHHHHHHHh-ccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCc
Q 013840 10 SSEERVKLFVGQVPKHMTEAQLLAMFK-EFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (435)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~~~f~-~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~ 88 (435)
....+..|+|.||=.-+|.-.|++++. .+|.|.+.||=+.+ -.|||.|.+.++|..-..+|||...-.+..+-
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIK------ShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIK------SHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHhh------cceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 446778999999999999999999998 57778877653333 38999999999999999999998655554444
Q ss_pred eeeeccC
Q 013840 89 LQVKYAD 95 (435)
Q Consensus 89 i~~~~~~ 95 (435)
+.+.|..
T Consensus 514 L~adf~~ 520 (718)
T KOG2416|consen 514 LIADFVR 520 (718)
T ss_pred eEeeecc
Confidence 5444443
No 184
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.28 E-value=0.004 Score=60.10 Aligned_cols=79 Identities=23% Similarity=0.223 Sum_probs=63.4
Q ss_pred ccCCCCceEEEeCCCCCCCHHHHHHHhhc-CCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCcee---CCe
Q 013840 344 IEGPPGANLFIYHIPQEFGDQELGNAFQA-FGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQL---GGK 419 (435)
Q Consensus 344 ~~~~~~~~v~V~nLp~~~t~~~L~~~F~~-fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l---~gr 419 (435)
.....+.+|+|.||=.-.|..+|++++.+ .|.|...+| | +-+..|||.|.+.++|.+.+.+|||... +.+
T Consensus 439 sR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--D----kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK 512 (718)
T KOG2416|consen 439 SRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--D----KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPK 512 (718)
T ss_pred CCCCccceEeeecccccchHHHHHHHHhhccCchHHHHH--H----HhhcceeEecccHHHHHHHHHHHhccccCCCCCc
Confidence 35557789999999888999999999985 556666654 2 2345699999999999999999999965 458
Q ss_pred EEEEEEccC
Q 013840 420 KLKVQLKRD 428 (435)
Q Consensus 420 ~i~v~~a~~ 428 (435)
.|-+.|+..
T Consensus 513 ~L~adf~~~ 521 (718)
T KOG2416|consen 513 HLIADFVRA 521 (718)
T ss_pred eeEeeecch
Confidence 888888753
No 185
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.26 E-value=0.0031 Score=54.65 Aligned_cols=61 Identities=25% Similarity=0.438 Sum_probs=48.9
Q ss_pred HHHHHhhh-ccCCeeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHHcCCCcCCCCcceEEE
Q 013840 117 AEVSALFS-IYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (435)
Q Consensus 117 ~~l~~~f~-~~g~i~~v~~~~~~~~~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v 178 (435)
++|...|+ +||+|+++.+..+..-.-.|-+||.|...|+|++|++.||+.. +.|+.+...+
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw-~~G~pi~ae~ 144 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRW-YNGRPIHAEL 144 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCcc-ccCCcceeee
Confidence 55666666 9999999988776544457899999999999999999999976 8888754433
No 186
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.07 E-value=0.58 Score=45.47 Aligned_cols=58 Identities=14% Similarity=0.252 Sum_probs=48.1
Q ss_pred cceEEEecCCCCCCHHHHHHhhh--ccCCeeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHHcC
Q 013840 102 EHKLFIGMLPKNVSEAEVSALFS--IYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 165 (435)
Q Consensus 102 ~~~l~v~~lp~~~t~~~l~~~f~--~~g~i~~v~~~~~~~~~~~g~afV~f~~~e~a~~a~~~l~~ 165 (435)
.+.|+|+-||..+-.|+|+.+|. .+.++.+|++-.+.. =||+|++..||+.|.+.|..
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n------WyITfesd~DAQqAykylre 234 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN------WYITFESDTDAQQAYKYLRE 234 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc------eEEEeecchhHHHHHHHHHH
Confidence 45688999999999999999996 477888888865532 39999999999999987653
No 187
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.05 E-value=0.073 Score=40.83 Aligned_cols=67 Identities=16% Similarity=0.182 Sum_probs=49.9
Q ss_pred CCceEEEecCCCCCCHHHHHHHHhccC-ceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCc
Q 013840 13 ERVKLFVGQVPKHMTEAQLLAMFKEFA-LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKT 81 (435)
Q Consensus 13 ~~~~l~v~nLp~~~t~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~ 81 (435)
....+.+...|+.++.++|..+.+.+- .|..+++++|. ..++..+.++|.+.++|....+.+||+.+
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~F 79 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPF 79 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCcc
Confidence 344555555555556667776666653 46678888876 34778999999999999999999999865
No 188
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.73 E-value=0.028 Score=47.53 Aligned_cols=62 Identities=26% Similarity=0.336 Sum_probs=47.2
Q ss_pred CHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcC--CceeCCeEEEEEEccCC
Q 013840 362 GDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMN--GCQLGGKKLKVQLKRDN 429 (435)
Q Consensus 362 t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~--g~~l~gr~i~v~~a~~~ 429 (435)
..+.|+++|..|+.+....+++. -+-..|.|.+.++|.+|...|+ +..+.|..++|-|+...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 35789999999999999888765 2458999999999999999999 99999999999998544
No 189
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.36 E-value=0.015 Score=48.99 Aligned_cols=74 Identities=8% Similarity=0.099 Sum_probs=45.7
Q ss_pred ccCCceEEEecCCCCCCHHHHHHHHhc-cCce---eEEEEEe-cCCCCC-ccceEEEEeCCHHHHHHHHHHhcCCCcCCC
Q 013840 11 SEERVKLFVGQVPKHMTEAQLLAMFKE-FALV---DEVNIIK-DKTTRA-SRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (435)
Q Consensus 11 ~~~~~~l~v~nLp~~~t~~~l~~~f~~-~g~i---~~~~~~~-~~~~~~-~~g~afV~f~~~e~a~~al~~l~~~~~~~~ 84 (435)
.....+|.||+||+..|++++.+.++. ++.. ..+.-.. +...+. .-.-|||.|.+.+++....+.++|..+.+.
T Consensus 4 ~~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~ 83 (176)
T PF03467_consen 4 EKEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDS 83 (176)
T ss_dssp -----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-T
T ss_pred cccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECC
Confidence 455679999999999999999997776 5544 2232111 221121 223699999999999999999888765544
No 190
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.17 E-value=0.011 Score=55.63 Aligned_cols=74 Identities=20% Similarity=0.273 Sum_probs=61.6
Q ss_pred CCceEEEeCCCCCC-CHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 013840 348 PGANLFIYHIPQEF-GDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 426 (435)
Q Consensus 348 ~~~~v~V~nLp~~~-t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a 426 (435)
+.+.+-+.-.|+.. |.++|..+|.+||+|..|.|-.. .--|.|+|.+..+|-.|-+. ++..|.||.|+|.|-
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~s-~~avlnnr~iKl~wh 443 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYAS-HGAVLNNRFIKLFWH 443 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhcc-ccceecCceeEEEEe
Confidence 55677777777665 67899999999999999987433 23599999999999888774 899999999999998
Q ss_pred cC
Q 013840 427 RD 428 (435)
Q Consensus 427 ~~ 428 (435)
+.
T Consensus 444 np 445 (526)
T KOG2135|consen 444 NP 445 (526)
T ss_pred cC
Confidence 76
No 191
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.04 E-value=0.069 Score=47.24 Aligned_cols=62 Identities=18% Similarity=0.119 Sum_probs=47.9
Q ss_pred HHHHHHHHhccCceeEEEEEecCCCCCc-cceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCceeee
Q 013840 28 EAQLLAMFKEFALVDEVNIIKDKTTRAS-RGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVK 92 (435)
Q Consensus 28 ~~~l~~~f~~~g~i~~~~~~~~~~~~~~-~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~~~ 92 (435)
++++++-+.+||.|.+|.|+.+...... ..-.||+|+..++|.+|+-.|||. +++| +.++.-
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGR-yFGG--r~v~A~ 362 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGR-YFGG--RVVSAC 362 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCc-eecc--eeeehe
Confidence 4678889999999999998887543322 236899999999999999999997 4555 555543
No 192
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.04 E-value=0.058 Score=45.54 Aligned_cols=71 Identities=8% Similarity=0.161 Sum_probs=46.2
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhc-CCcE---EEEE--EEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCC
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQA-FGRV---LSAK--VFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGG 418 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~-fG~v---~~v~--i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~g 418 (435)
....|.||+||.++|++++.+.++. ++.- ..+. .......-.....|+|.|.+.++...-...++|..|.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D 82 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVD 82 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEEC
Confidence 4578999999999999999997776 6655 3333 11111112234569999999999999999999987743
No 193
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.95 E-value=0.39 Score=36.86 Aligned_cols=67 Identities=12% Similarity=0.072 Sum_probs=50.5
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcCC-cEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCC
Q 013840 350 ANLFIYHIPQEFGDQELGNAFQAFG-RVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGG 418 (435)
Q Consensus 350 ~~v~V~nLp~~~t~~~L~~~F~~fG-~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~g 418 (435)
..+.+-..|.-++.++|..+.+.+- .|..++|+++. ...+-.++++|.+.++|..-...+||+.+..
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 4444555566667777776666655 46778888873 3467789999999999999999999998865
No 194
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=94.95 E-value=0.13 Score=52.36 Aligned_cols=74 Identities=20% Similarity=0.253 Sum_probs=63.7
Q ss_pred eEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCcee--CCeEEEEEEccC
Q 013840 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQL--GGKKLKVQLKRD 428 (435)
Q Consensus 351 ~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l--~gr~i~v~~a~~ 428 (435)
...+.|.+-+.+-.-|..+|++||.|.+++.+++-+ .|.|+|...+.|-.|+.+++|+.+ -|-+.+|.+|+.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 456667777778889999999999999999988742 699999999999999999999975 478899999986
Q ss_pred Cc
Q 013840 429 NK 430 (435)
Q Consensus 429 ~~ 430 (435)
-.
T Consensus 374 ~~ 375 (1007)
T KOG4574|consen 374 LP 375 (1007)
T ss_pred cc
Confidence 54
No 195
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.55 E-value=0.015 Score=52.75 Aligned_cols=80 Identities=19% Similarity=0.385 Sum_probs=60.6
Q ss_pred ceEEEeCCCCCCCHHHHH---HHhhcCCcEEEEEEEeeCC---CCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEE
Q 013840 350 ANLFIYHIPQEFGDQELG---NAFQAFGRVLSAKVFVDKA---TGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKV 423 (435)
Q Consensus 350 ~~v~V~nLp~~~t~~~L~---~~F~~fG~v~~v~i~~~~~---~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v 423 (435)
.-+||-+|+..+-.+.+. ++|.+||.|.+|.+..+.. ..-...-++|.|...++|..|+...+|..+.|+.|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 347788888776554443 5789999999998877641 1111223799999999999999999999999999888
Q ss_pred EEccCC
Q 013840 424 QLKRDN 429 (435)
Q Consensus 424 ~~a~~~ 429 (435)
+++..+
T Consensus 158 ~~gttk 163 (327)
T KOG2068|consen 158 SLGTTK 163 (327)
T ss_pred hhCCCc
Confidence 776544
No 196
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.45 E-value=0.15 Score=48.05 Aligned_cols=71 Identities=20% Similarity=0.308 Sum_probs=61.0
Q ss_pred CccCCceEEEecCCCCCCHHHHHHHHhcc-CceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcC
Q 013840 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEF-ALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTL 82 (435)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~-g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~ 82 (435)
++..++.|.|-.+|-.+|..||..|+..+ -.|..+++++|.. ..+..+.|+|.+.++|..+-+.+||..+.
T Consensus 70 ~~~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 70 NASSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred cCCCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 33448999999999999999999999775 4688899999763 46779999999999999999999998753
No 197
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=93.75 E-value=0.37 Score=33.08 Aligned_cols=55 Identities=5% Similarity=0.183 Sum_probs=44.3
Q ss_pred CCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEE
Q 013840 360 EFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKV 423 (435)
Q Consensus 360 ~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v 423 (435)
.++-+|++..+.+|+ -.+|..++ +| =+|.|.+..||+++....+|..+.+.+|.+
T Consensus 11 ~~~v~d~K~~Lr~y~---~~~I~~d~-----tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR---WDRIRDDR-----TG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCC---cceEEecC-----CE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 577899999999995 23344453 34 489999999999999999999998888765
No 198
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=93.64 E-value=0.12 Score=49.98 Aligned_cols=68 Identities=18% Similarity=0.270 Sum_probs=55.3
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhc--CCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCC--ceeCCeEEE
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQA--FGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG--CQLGGKKLK 422 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~--fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g--~~l~gr~i~ 422 (435)
..|.|+++-||+.+..|+++.+|+. +.++++|....+. -=||.|++..||+.|.++|.. +.|.|++|.
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 4589999999999999999999964 8899999987653 259999999999999877642 245666554
No 199
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=93.46 E-value=0.5 Score=37.41 Aligned_cols=76 Identities=16% Similarity=0.233 Sum_probs=54.8
Q ss_pred cCccCCceEEEecCCCCCCH-HH---HHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCC
Q 013840 9 KSSEERVKLFVGQVPKHMTE-AQ---LLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (435)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~t~-~~---l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~ 84 (435)
..+.+-.||.|+=|..++.. +| |...++.||+|.+|.+. |+ -.|.|.|.+..+|=+|+.+.... .
T Consensus 81 ~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-----Gr--qsavVvF~d~~SAC~Av~Af~s~--~-- 149 (166)
T PF15023_consen 81 TKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-----GR--QSAVVVFKDITSACKAVSAFQSR--A-- 149 (166)
T ss_pred CCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-----CC--ceEEEEehhhHHHHHHHHhhcCC--C--
Confidence 34667788999877777633 33 55667889999988652 22 28999999999999999998653 2
Q ss_pred CCCceeeeccC
Q 013840 85 ASSPLQVKYAD 95 (435)
Q Consensus 85 ~~~~i~~~~~~ 95 (435)
.+..+...|..
T Consensus 150 pgtm~qCsWqq 160 (166)
T PF15023_consen 150 PGTMFQCSWQQ 160 (166)
T ss_pred CCceEEeeccc
Confidence 33666666653
No 200
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.00 E-value=4.8 Score=36.30 Aligned_cols=64 Identities=20% Similarity=0.277 Sum_probs=49.4
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeE
Q 013840 349 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKK 420 (435)
Q Consensus 349 ~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~ 420 (435)
..=|-|-++|..- -..|..+|++||+|.+.....+ -.|-.|.|.++-+|++|+.. ||..|+|-.
T Consensus 197 D~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~~n------gNwMhirYssr~~A~KALsk-ng~ii~g~v 260 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTPSN------GNWMHIRYSSRTHAQKALSK-NGTIIDGDV 260 (350)
T ss_pred cceEEEeccCccc-hhHHHHHHHhhCeeeeeecCCC------CceEEEEecchhHHHHhhhh-cCeeeccce
Confidence 3445566776553 4578899999999988766522 24889999999999999997 999998853
No 201
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=92.67 E-value=0.29 Score=39.30 Aligned_cols=54 Identities=22% Similarity=0.482 Sum_probs=42.0
Q ss_pred HHHHHhhhccCCeeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHHcCCCcCCCCcceEEEE
Q 013840 117 AEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (435)
Q Consensus 117 ~~l~~~f~~~g~i~~v~~~~~~~~~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~ 179 (435)
.+|.+.|..||.+.-+++..+ .-+|+|.+-+.|-+|+. ++|.. +.|+.+.++.+
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~-------~mwVTF~dg~sALaals-~dg~~-v~g~~l~i~LK 104 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGD-------TMWVTFRDGQSALAALS-LDGIQ-VNGRTLKIRLK 104 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETT-------CEEEEESSCHHHHHHHH-GCCSE-ETTEEEEEEE-
T ss_pred HHHHHHHHhCCceEEEEEeCC-------eEEEEECccHHHHHHHc-cCCcE-ECCEEEEEEeC
Confidence 468888999999888877654 67999999999999997 78877 78887555443
No 202
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=92.63 E-value=0.2 Score=49.64 Aligned_cols=69 Identities=19% Similarity=0.218 Sum_probs=60.9
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEE
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 425 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~ 425 (435)
+..+|||+|+...+..+-++......|.|.++.+.. |||..|....-+.+|+..++-..++|..+.+.-
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 567999999999999999999999999999887642 899999999999999999999999887766543
No 203
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=92.38 E-value=0.11 Score=37.96 Aligned_cols=66 Identities=9% Similarity=0.112 Sum_probs=41.9
Q ss_pred EEEEeCCHHHHHHHHHHhcCCCcCCCCCCceeeeccCc--------hhccccceEEEecCCCCCCHHHHHHhhh
Q 013840 59 CFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADG--------ELERLEHKLFIGMLPKNVSEAEVSALFS 124 (435)
Q Consensus 59 afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~~~~~~~--------~~~~~~~~l~v~~lp~~~t~~~l~~~f~ 124 (435)
|.|.|.+..-|++.+++-.....+.+....++++...- ......++|.|+|||....+++|++.++
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 68999999999999976333222222222233222211 1112267899999999999999987653
No 204
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=92.04 E-value=0.8 Score=46.88 Aligned_cols=70 Identities=27% Similarity=0.382 Sum_probs=53.9
Q ss_pred cCCCCCCHHHHHHhhhccCCeeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHHcCCCcCCCCcceEEEEecCCH
Q 013840 109 MLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 184 (435)
Q Consensus 109 ~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~~~~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~a~~~ 184 (435)
|.+-..+-.-|..+|++||.|...+..++ -..|.|.|...+.|..|.+.++|+.+..- .-+.+|.+++..
T Consensus 305 nn~v~~tSssL~~l~s~yg~v~s~wtlr~-----~N~alvs~~s~~sai~a~dAl~gkevs~~-g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 305 NNAVNLTSSSLATLCSDYGSVASAWTLRD-----LNMALVSFSSVESAILALDALQGKEVSVT-GAPSRVSFAKTL 374 (1007)
T ss_pred cccccchHHHHHHHHHhhcchhhheeccc-----ccchhhhhHHHHHHHHhhhhhcCCccccc-CCceeEEecccc
Confidence 33335556679999999999999998776 44899999999999999999999874332 234677776653
No 205
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=91.71 E-value=0.76 Score=32.50 Aligned_cols=59 Identities=20% Similarity=0.363 Sum_probs=36.2
Q ss_pred CCCCHHHHHHHhhcCCcE-----EEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 013840 359 QEFGDQELGNAFQAFGRV-----LSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 426 (435)
Q Consensus 359 ~~~t~~~L~~~F~~fG~v-----~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a 426 (435)
..++..+|..++..-+.| -.|.|..+ |+||+-... .|..++..|++..+.|++|+|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 468889999999877544 45666433 789988765 777899999999999999999875
No 206
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=90.35 E-value=1.4 Score=39.63 Aligned_cols=75 Identities=21% Similarity=0.269 Sum_probs=55.3
Q ss_pred cceEEEecCCCCCCHHHHHHhhhccCCeeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHHcCCCcCCCCcceEEEEec
Q 013840 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWA 181 (435)
Q Consensus 102 ~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~~~~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~a 181 (435)
+..|.|-++|+. ....|..+|+.||.|.+.....+ -.+-+|+|.+..+|.+|+.+ +|. +|+|. +.|-|+.+
T Consensus 197 D~WVTVfGFppg-~~s~vL~~F~~cG~Vvkhv~~~n-----gNwMhirYssr~~A~KALsk-ng~-ii~g~-vmiGVkpC 267 (350)
T KOG4285|consen 197 DTWVTVFGFPPG-QVSIVLNLFSRCGEVVKHVTPSN-----GNWMHIRYSSRTHAQKALSK-NGT-IIDGD-VMIGVKPC 267 (350)
T ss_pred cceEEEeccCcc-chhHHHHHHHhhCeeeeeecCCC-----CceEEEEecchhHHHHhhhh-cCe-eeccc-eEEeeeec
Confidence 467888888764 45668899999999987666532 45899999999999999974 664 57766 34566655
Q ss_pred CCHH
Q 013840 182 DTEK 185 (435)
Q Consensus 182 ~~~~ 185 (435)
..+.
T Consensus 268 tDks 271 (350)
T KOG4285|consen 268 TDKS 271 (350)
T ss_pred CCHH
Confidence 5543
No 207
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=88.90 E-value=1.8 Score=41.20 Aligned_cols=68 Identities=16% Similarity=0.253 Sum_probs=58.0
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhcCC-cEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCC
Q 013840 349 GANLFIYHIPQEFGDQELGNAFQAFG-RVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGG 418 (435)
Q Consensus 349 ~~~v~V~nLp~~~t~~~L~~~F~~fG-~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~g 418 (435)
++.|.|-.+|..+|-.||..|+..|- .|.+++|++|. --.+-..+|.|.+.++|..--+.+||+.|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~--~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG--MPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC--CCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 68899999999999999999998765 67889999863 2234458999999999999999999998865
No 208
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=88.21 E-value=0.26 Score=44.95 Aligned_cols=79 Identities=11% Similarity=0.313 Sum_probs=56.3
Q ss_pred CCceEEEecCCCCCCHHHH---HHHHhccCceeEEEEEecCC---CCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCC
Q 013840 13 ERVKLFVGQVPKHMTEAQL---LAMFKEFALVDEVNIIKDKT---TRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (435)
Q Consensus 13 ~~~~l~v~nLp~~~t~~~l---~~~f~~~g~i~~~~~~~~~~---~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~ 86 (435)
....+||-+|+.....+.+ .+.|..||.|..|.+.++.. .......+||.|...|+|..||...+|.. ++|
T Consensus 76 qknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~-~dg-- 152 (327)
T KOG2068|consen 76 QKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFV-DDG-- 152 (327)
T ss_pred hhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHH-hhh--
Confidence 3467889999988765555 37788899998887777552 12233469999999999999999988863 444
Q ss_pred Cceeeecc
Q 013840 87 SPLQVKYA 94 (435)
Q Consensus 87 ~~i~~~~~ 94 (435)
+.++..+.
T Consensus 153 ~~lka~~g 160 (327)
T KOG2068|consen 153 RALKASLG 160 (327)
T ss_pred hhhHHhhC
Confidence 44444433
No 209
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=85.98 E-value=0.57 Score=38.54 Aligned_cols=69 Identities=10% Similarity=0.048 Sum_probs=49.0
Q ss_pred ccccccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCC-CCCccceEEEEeCCHHHHHHHHHHh
Q 013840 4 SKKEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKT-TRASRGCCFVICPSRQEADKAVNAC 76 (435)
Q Consensus 4 ~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~-~~~~~g~afV~f~~~e~a~~al~~l 76 (435)
..++.....-.+++|.. |.+...++|.++-+ |.+..+.+..... ....+|..||+|.+.+.|..+++..
T Consensus 101 vt~e~~~~~~~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~~ 170 (205)
T KOG4213|consen 101 VTDEYKEGIKERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDTH 170 (205)
T ss_pred ccHHHHHHHHHhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhhh
Confidence 33444445556778887 55555566666666 7888888766432 1378899999999999999988764
No 210
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=84.28 E-value=0.34 Score=35.37 Aligned_cols=24 Identities=17% Similarity=0.445 Sum_probs=20.8
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhh
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQ 371 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~ 371 (435)
..++|.|.|||...++++|++..+
T Consensus 51 s~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 51 SKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred cCCEEEEeCCCCCCChhhheeeEE
Confidence 558999999999999999998753
No 211
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=81.31 E-value=7.6 Score=26.69 Aligned_cols=48 Identities=15% Similarity=0.255 Sum_probs=38.3
Q ss_pred CCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCc
Q 013840 25 HMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKT 81 (435)
Q Consensus 25 ~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~ 81 (435)
.++.+|++.-+..|+- .++..|+. | -||.|.+..+|+++....++..+
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~d~t-G-----fYIvF~~~~Ea~rC~~~~~~~~~ 58 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRDDRT-G-----FYIVFNDSKEAERCFRAEDGTLF 58 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEecCC-E-----EEEEECChHHHHHHHHhcCCCEE
Confidence 4678999999999985 34556663 3 58999999999999999888754
No 212
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=81.14 E-value=2.9 Score=32.54 Aligned_cols=54 Identities=22% Similarity=0.268 Sum_probs=31.2
Q ss_pred ceEEEeCCCCC---------CCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHH
Q 013840 350 ANLFIYHIPQE---------FGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQN 406 (435)
Q Consensus 350 ~~v~V~nLp~~---------~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~ 406 (435)
-++.|-|++.. ++.++|++.|+.|..+. ++.+.++ ..++|+++|+|......-+
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~ 71 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFK 71 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHH
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHH
Confidence 46778888543 35679999999998875 5565664 4678999999987655544
No 213
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=81.07 E-value=3 Score=28.92 Aligned_cols=64 Identities=19% Similarity=0.241 Sum_probs=49.2
Q ss_pred HHHHHHhhcCC-cEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEccCCc
Q 013840 364 QELGNAFQAFG-RVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRDNK 430 (435)
Q Consensus 364 ~~L~~~F~~fG-~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a~~~~ 430 (435)
++|++.|...| +|..+.-+..+.+..+.-.-||+.+...+ .-+.++-..|++.+|+|...+.+.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~---~k~i~~Ik~l~~~~V~vE~~~k~~ 66 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPN---NKEIYKIKTLCGQRVKVERPRKRR 66 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcc---ccceeehHhhCCeEEEEecCCCCC
Confidence 57888888888 78888888777677777788999887766 333466778889998888776654
No 214
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=80.40 E-value=1.4 Score=38.93 Aligned_cols=82 Identities=20% Similarity=0.417 Sum_probs=51.7
Q ss_pred CCceEEEeCCCCCC------------CHHHHHHHhhcCCcEEEEEEEe-----eCCCCCcceEE--------------EE
Q 013840 348 PGANLFIYHIPQEF------------GDQELGNAFQAFGRVLSAKVFV-----DKATGVSKCFG--------------FV 396 (435)
Q Consensus 348 ~~~~v~V~nLp~~~------------t~~~L~~~F~~fG~v~~v~i~~-----~~~~g~~~g~a--------------fV 396 (435)
.+.||++.+||..| +++-|+..|..||.|..|.|+. ...+|+..|+- +|
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayv 227 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYV 227 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHH
Confidence 44789999999776 5678999999999999998863 22345544432 34
Q ss_pred EeCCHHHHHHHHHhcCCcee----CC----eEEEEEEccCC
Q 013840 397 SYESPASAQNAIAMMNGCQL----GG----KKLKVQLKRDN 429 (435)
Q Consensus 397 ~F~~~~~A~~A~~~l~g~~l----~g----r~i~v~~a~~~ 429 (435)
+|..-.--..|+.+|-|.++ .| -.++|.|.+++
T Consensus 228 qfmeykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrsr 268 (445)
T KOG2891|consen 228 QFMEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRSR 268 (445)
T ss_pred HHHHHHhHHHHHHHHhcchHHhhcCCcccccccccccchhh
Confidence 44333333445555555433 22 35777777654
No 215
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=80.24 E-value=1.5 Score=36.39 Aligned_cols=76 Identities=14% Similarity=0.204 Sum_probs=55.0
Q ss_pred CCceEEEeCCCCCCC-----HHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCe-EE
Q 013840 348 PGANLFIYHIPQEFG-----DQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGK-KL 421 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t-----~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr-~i 421 (435)
-.+++.+.+++..+- ......+|..|.+.....+++. .+...|.|.+++.|..|...+|+..|.|+ .+
T Consensus 9 lp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~ 82 (193)
T KOG4019|consen 9 LPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNEL 82 (193)
T ss_pred ccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceE
Confidence 346788888877652 2344556666665554444433 35678999999999999999999999998 88
Q ss_pred EEEEccCC
Q 013840 422 KVQLKRDN 429 (435)
Q Consensus 422 ~v~~a~~~ 429 (435)
++-++...
T Consensus 83 k~yfaQ~~ 90 (193)
T KOG4019|consen 83 KLYFAQPG 90 (193)
T ss_pred EEEEccCC
Confidence 88777654
No 216
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=77.09 E-value=1.2 Score=42.61 Aligned_cols=77 Identities=19% Similarity=0.245 Sum_probs=58.2
Q ss_pred cCCceEEEecCCCCC-CHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCcee
Q 013840 12 EERVKLFVGQVPKHM-TEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (435)
Q Consensus 12 ~~~~~l~v~nLp~~~-t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~ 90 (435)
.+.+.|-+.-.|+.. |.++|...|..||.|.+|.+-.. .-.|.|.|.+.-+|-+|- +.++. .+.+ +.|+
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~-~s~~a-vlnn--r~iK 439 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAY-ASHGA-VLNN--RFIK 439 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchh-ccccc-eecC--ceeE
Confidence 455667777777776 66999999999999999887333 338999999999997775 33454 3544 8888
Q ss_pred eeccCchh
Q 013840 91 VKYADGEL 98 (435)
Q Consensus 91 ~~~~~~~~ 98 (435)
+.|.++..
T Consensus 440 l~whnps~ 447 (526)
T KOG2135|consen 440 LFWHNPSP 447 (526)
T ss_pred EEEecCCc
Confidence 88887644
No 217
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=75.76 E-value=5.4 Score=33.85 Aligned_cols=58 Identities=21% Similarity=0.239 Sum_probs=40.0
Q ss_pred HHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhc--CCCcCCCCCCceeeecc
Q 013840 28 EAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACH--NKKTLPGASSPLQVKYA 94 (435)
Q Consensus 28 ~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~--~~~~~~~~~~~i~~~~~ 94 (435)
.+.|+++|..++.+..+...+.-. -..|.|.+.++|.+|...|+ +..+ .| ..+++-+.
T Consensus 9 ~~~l~~l~~~~~~~~~~~~L~sFr------Ri~v~f~~~~~A~~~r~~l~~~~~~~-~g--~~l~~yf~ 68 (184)
T PF04847_consen 9 LAELEELFSTYDPPVQFSPLKSFR------RIRVVFESPESAQRARQLLHWDGTSF-NG--KRLRVYFG 68 (184)
T ss_dssp HHHHHHHHHTT-SS-EEEEETTTT------EEEEE-SSTTHHHHHHHTST--TSEE-TT--EE-EEE--
T ss_pred HHHHHHHHHhcCCceEEEEcCCCC------EEEEEeCCHHHHHHHHHHhccccccc-CC--CceEEEEc
Confidence 478999999999998887766543 78999999999999999987 5543 22 34554444
No 218
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=74.12 E-value=6.8 Score=31.99 Aligned_cols=104 Identities=15% Similarity=0.132 Sum_probs=65.5
Q ss_pred CCCHHHHHHHHhc-cCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCceee-eccCc------
Q 013840 25 HMTEAQLLAMFKE-FALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV-KYADG------ 96 (435)
Q Consensus 25 ~~t~~~l~~~f~~-~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~~-~~~~~------ 96 (435)
..+...|.+.+.+ ++....+.+..- ..++..++|.+.+++.++++. +...+.+ ..+.+ .|...
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~~--~p~~~~~--~~~~l~~W~~~~~~~~~ 98 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVLKG--GPWNFNG--HFLILQRWSPDFNPSEV 98 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEEec--ccccccc--cchhhhhhccccccccc
Confidence 4567777777655 443333443322 224999999999999999874 3333333 33322 22211
Q ss_pred hhccccceEEEecCCCC-CCHHHHHHhhhccCCeeEEEEecC
Q 013840 97 ELERLEHKLFIGMLPKN-VSEAEVSALFSIYGTIKDLQILRG 137 (435)
Q Consensus 97 ~~~~~~~~l~v~~lp~~-~t~~~l~~~f~~~g~i~~v~~~~~ 137 (435)
.......-|.|.|||.. .+++-++++.+.+|.+..+.....
T Consensus 99 ~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 99 KFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred ceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCC
Confidence 11112344788899988 688889999999999988877554
No 219
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=73.87 E-value=6.8 Score=26.99 Aligned_cols=64 Identities=20% Similarity=0.312 Sum_probs=46.8
Q ss_pred HHHHHHhhcCC-cEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEccCCc
Q 013840 364 QELGNAFQAFG-RVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRDNK 430 (435)
Q Consensus 364 ~~L~~~F~~fG-~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a~~~~ 430 (435)
++|.+-|++.| .+..++-+..+.++.+--.-+|+-+...+-.. .++-+.|+|++|.|.....+.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k~~ 66 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHKRK 66 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCcccC
Confidence 46888899888 78888888777666666677888876544333 466778899998887665543
No 220
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.43 E-value=18 Score=35.90 Aligned_cols=80 Identities=20% Similarity=0.335 Sum_probs=61.2
Q ss_pred CCCCceEEEeCCCC-CCCHHHHHHHhhcC----CcEEEEEEEeeCC----------CCC---------------------
Q 013840 346 GPPGANLFIYHIPQ-EFGDQELGNAFQAF----GRVLSAKVFVDKA----------TGV--------------------- 389 (435)
Q Consensus 346 ~~~~~~v~V~nLp~-~~t~~~L~~~F~~f----G~v~~v~i~~~~~----------~g~--------------------- 389 (435)
+.....|-|-||+. .+..+||.-+|+.| |.|.+|.|.+..- +|-
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 34668999999985 57899999998754 4899999976320 111
Q ss_pred ----------------cceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEE
Q 013840 390 ----------------SKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 425 (435)
Q Consensus 390 ----------------~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~ 425 (435)
.--||+|+|.+.+.|.+.-+.+.|..|...-..+.+
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DL 302 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDL 302 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeee
Confidence 124799999999999999999999999876555554
No 221
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.25 E-value=15 Score=36.32 Aligned_cols=81 Identities=20% Similarity=0.296 Sum_probs=60.5
Q ss_pred cceEEEecCCCC-CCHHHHHHhhhcc----CCeeEEEEecCC-----------CCC------------------------
Q 013840 102 EHKLFIGMLPKN-VSEAEVSALFSIY----GTIKDLQILRGS-----------QQT------------------------ 141 (435)
Q Consensus 102 ~~~l~v~~lp~~-~t~~~l~~~f~~~----g~i~~v~~~~~~-----------~~~------------------------ 141 (435)
.++|-|-|+.++ +..++|+-+|+.| |.|++|.|+... .|.
T Consensus 174 T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~~~ 253 (650)
T KOG2318|consen 174 TKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEEDV 253 (650)
T ss_pred cceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhhhH
Confidence 467889999987 7899999999877 578888876321 111
Q ss_pred -------------cccEEEEEeCCHHHHHHHHHHHcCCCcCCCCcceEEEEecCC
Q 013840 142 -------------SKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADT 183 (435)
Q Consensus 142 -------------~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~a~~ 183 (435)
...||.|.|.+.+.|....+.|+|.. +......+.+.|-+.
T Consensus 254 ~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~E-fEsS~~~~DLRFIPD 307 (650)
T KOG2318|consen 254 DREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIE-FESSANKLDLRFIPD 307 (650)
T ss_pred HHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcce-eccccceeeeeecCC
Confidence 13689999999999999999999987 555554555555433
No 222
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=72.19 E-value=7.2 Score=35.15 Aligned_cols=83 Identities=11% Similarity=0.147 Sum_probs=60.8
Q ss_pred cCCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeC-------CCCCcceEEEEEeCCHHHHHH----HHHhcC-
Q 013840 345 EGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDK-------ATGVSKCFGFVSYESPASAQN----AIAMMN- 412 (435)
Q Consensus 345 ~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~-------~~g~~~g~afV~F~~~~~A~~----A~~~l~- 412 (435)
+....+.|...|+..+++-..+...|-+||.|.+|.++.+. +.........+.|-+++.... .++.|.
T Consensus 11 D~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsE 90 (309)
T PF10567_consen 11 DEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSE 90 (309)
T ss_pred ccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHH
Confidence 44567899999999999999999999999999999998764 122334568999999887543 333333
Q ss_pred -CceeCCeEEEEEEcc
Q 013840 413 -GCQLGGKKLKVQLKR 427 (435)
Q Consensus 413 -g~~l~gr~i~v~~a~ 427 (435)
...|....|.|+|..
T Consensus 91 fK~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 91 FKTKLKSESLTLSFVS 106 (309)
T ss_pred HHHhcCCcceeEEEEE
Confidence 235666677776654
No 223
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=68.51 E-value=11 Score=25.31 Aligned_cols=14 Identities=14% Similarity=0.415 Sum_probs=12.9
Q ss_pred HHHHHHHhccCcee
Q 013840 29 AQLLAMFKEFALVD 42 (435)
Q Consensus 29 ~~l~~~f~~~g~i~ 42 (435)
.+||++|+.+|.|.
T Consensus 9 ~~iR~~fs~lG~I~ 22 (62)
T PF15513_consen 9 AEIRQFFSQLGEIA 22 (62)
T ss_pred HHHHHHHHhcCcEE
Confidence 68999999999987
No 224
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=67.42 E-value=14 Score=33.33 Aligned_cols=60 Identities=12% Similarity=0.290 Sum_probs=48.6
Q ss_pred ccceEEEecCCCCCCHHHHHHhhhccCCeeEEEEecCC--------CCCcccEEEEEeCCHHHHHHHH
Q 013840 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS--------QQTSKGCAFLKYETKEQALAAL 160 (435)
Q Consensus 101 ~~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~--------~~~~~g~afV~f~~~e~a~~a~ 160 (435)
..|.|.+.|+..+++-..+...|-+||+|+.|.++.+. .........+.|-+.+.|-...
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFY 81 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFY 81 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHH
Confidence 35678899999999999999999999999999998765 2233467889999988876544
No 225
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=67.17 E-value=16 Score=32.72 Aligned_cols=51 Identities=12% Similarity=0.251 Sum_probs=39.1
Q ss_pred ccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCH
Q 013840 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSR 66 (435)
Q Consensus 11 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~ 66 (435)
....+-|+++|||.+.-..||+..+.+.+.+. ..+.+ ..+.|-||+.|.+.
T Consensus 327 a~~~~di~~~nl~rd~rv~dlk~~lr~~~~~p-m~isw----kg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 327 AGAKTDIKLTNLSRDIRVKDLKSELRKRECTP-MSISW----KGHFGKCFLHFGNR 377 (396)
T ss_pred CccccceeeccCccccchHHHHHHHHhcCCCc-eeEee----ecCCcceeEecCCc
Confidence 34456799999999999999999998877433 44433 45777999999764
No 226
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=65.91 E-value=33 Score=24.09 Aligned_cols=56 Identities=23% Similarity=0.396 Sum_probs=33.4
Q ss_pred CCCCHHHHHHhhhccCCe-----eEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHHcCCCcCCCCcceE
Q 013840 112 KNVSEAEVSALFSIYGTI-----KDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPL 176 (435)
Q Consensus 112 ~~~t~~~l~~~f~~~g~i-----~~v~~~~~~~~~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l 176 (435)
..++..+|..+++..+.+ -.|.+..+ |+||+... +.|..+++.|++.. +.|+.+.+
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~-------~S~vev~~-~~a~~v~~~l~~~~-~~gk~v~v 71 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN-------FSFVEVPE-EVAEKVLEALNGKK-IKGKKVRV 71 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS--------EEEEE-T-T-HHHHHHHHTT---SSS----E
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee-------EEEEEECH-HHHHHHHHHhcCCC-CCCeeEEE
Confidence 457888999999877544 46777654 88998875 47888999999876 77876433
No 227
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=65.54 E-value=7.4 Score=30.25 Aligned_cols=51 Identities=20% Similarity=0.294 Sum_probs=29.6
Q ss_pred eEEEecCCCC---------CCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHH
Q 013840 16 KLFVGQVPKH---------MTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEA 69 (435)
Q Consensus 16 ~l~v~nLp~~---------~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a 69 (435)
++.|.|+|.. ++.++|++.|+.|.+++ ++...++ ..++|++.|.|...-..
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~G 69 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSG 69 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHH
Confidence 4556666543 34588999999998875 7777766 36889999999875544
No 228
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.32 E-value=1.6 Score=41.27 Aligned_cols=80 Identities=5% Similarity=-0.118 Sum_probs=64.8
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEccC
Q 013840 349 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRD 428 (435)
Q Consensus 349 ~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a~~ 428 (435)
++..++..+|...++++|.-+|+.||.|..+.+-+....|...-.+||.-.+ .+|..+|..+.-+.+.|.++++.++..
T Consensus 3 s~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 3 SMKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred chhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 3556788899999999999999999999999887776677777778888765 467778877778888888888887765
Q ss_pred C
Q 013840 429 N 429 (435)
Q Consensus 429 ~ 429 (435)
.
T Consensus 82 s 82 (572)
T KOG4365|consen 82 S 82 (572)
T ss_pred h
Confidence 3
No 229
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.93 E-value=21 Score=33.68 Aligned_cols=54 Identities=17% Similarity=0.260 Sum_probs=43.5
Q ss_pred ceEEEecCCCCCCHHHHHHHHhccCc-eeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHH
Q 013840 15 VKLFVGQVPKHMTEAQLLAMFKEFAL-VDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75 (435)
Q Consensus 15 ~~l~v~nLp~~~t~~~l~~~f~~~g~-i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~ 75 (435)
..|-|.|+|.....+||...|+.|+. ...|+.+.|. .||-.|.+...|..||..
T Consensus 392 HVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 392 HVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 56789999999988999999999974 2334444443 899999999999999865
No 230
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=57.17 E-value=23 Score=31.75 Aligned_cols=49 Identities=6% Similarity=0.057 Sum_probs=37.0
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCc-EEEEEEEeeCCCCCcceEEEEEeCCHH
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGR-VLSAKVFVDKATGVSKCFGFVSYESPA 402 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~-v~~v~i~~~~~~g~~~g~afV~F~~~~ 402 (435)
--+-|+|.||+.++--.||+..+.+-|- ..++..- .+.|-||+.|.++.
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk------g~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK------GHFGKCFLHFGNRK 378 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCCceeEeee------cCCcceeEecCCcc
Confidence 3456999999999999999999988763 3455441 24577999997754
No 231
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=55.65 E-value=43 Score=24.32 Aligned_cols=53 Identities=11% Similarity=0.241 Sum_probs=40.5
Q ss_pred CCCCCCCHHHHHHHhhc-CC-cEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhc
Q 013840 356 HIPQEFGDQELGNAFQA-FG-RVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 411 (435)
Q Consensus 356 nLp~~~t~~~L~~~F~~-fG-~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l 411 (435)
-++...+..++++.++. || .|.+|..+..+ .+.. =|+|.+...++|......+
T Consensus 27 ~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~-~~~K--KA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 27 IVDRRATKPDIKRAVEELFDVKVEKVNTLITP-KGEK--KAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-CCcE--EEEEEeCCCCcHHHHHHhh
Confidence 45778999999999976 88 68888877664 3333 3999999999988775543
No 232
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=55.41 E-value=8 Score=38.86 Aligned_cols=59 Identities=14% Similarity=0.092 Sum_probs=50.3
Q ss_pred cCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCC
Q 013840 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNK 79 (435)
Q Consensus 12 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~ 79 (435)
.+.-++||+|+...+..+-++..+..+|.|.+++... |+|..|....-..+|+..++-.
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~ 96 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTEL 96 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhccc
Confidence 4567899999999999999999999999887654322 9999999999999999887654
No 233
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=54.46 E-value=56 Score=23.25 Aligned_cols=57 Identities=11% Similarity=0.250 Sum_probs=41.9
Q ss_pred EEEeCCCCCCCHHHHHHHhhc-CC-cEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhc
Q 013840 352 LFIYHIPQEFGDQELGNAFQA-FG-RVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 411 (435)
Q Consensus 352 v~V~nLp~~~t~~~L~~~F~~-fG-~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l 411 (435)
-|+=.++.+.|..+++..++. || .|.+|..+.-+ .+.. -|||.+..-+.|...-..+
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~-~~~K--KA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP-RGEK--KAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC-CCce--EEEEEECCCCcHHHHHHhh
Confidence 344456889999999999976 78 68888776654 3333 3999999988888765543
No 234
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=53.22 E-value=1.6e+02 Score=30.85 Aligned_cols=101 Identities=14% Similarity=0.081 Sum_probs=0.0
Q ss_pred CCCCCCCCcCCCCCCCCCCCCC--ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCC
Q 013840 257 PVNQGNAMRGASPDLSSNMGPR--NYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSS 334 (435)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (435)
.....+......+.++++-+.+ ....+|++....+.+..++.+.+.+...+..|..|..+++.+...+-....+..--
T Consensus 513 al~s~~~~~~~~~~iP~PP~~pp~gG~g~pppPppPPlpggag~PPPPpplPg~aG~PPpPppppg~~gppPPPpp~g~~ 592 (1102)
T KOG1924|consen 513 ALSSPSQLLPIDGGIPPPPPLPPTGGTGPPPPPPPPPLPGGAGPPPPPPPLPGIAGGPPPPPPPPGGGGPPPPPPPGGFL 592 (1102)
T ss_pred hccCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCcccCCCCccCCCCCCCCCCCcCCCCCCC
Q ss_pred CCCCCCCCcccCCCCceEEEeCCCCCCC
Q 013840 335 SGGTGSGGQIEGPPGANLFIYHIPQEFG 362 (435)
Q Consensus 335 ~~~~~~~~~~~~~~~~~v~V~nLp~~~t 362 (435)
+.+.........+ .+-.||+..+
T Consensus 593 Gg~ppPP~~gm~p-----maPvlP~gLk 615 (1102)
T KOG1924|consen 593 GGPPPPPPPGMFP-----MAPVLPFGLK 615 (1102)
T ss_pred CCCCCCCCCCccc-----ccccCCCCCC
No 235
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=49.71 E-value=36 Score=22.96 Aligned_cols=19 Identities=21% Similarity=0.308 Sum_probs=16.0
Q ss_pred HHHHHHhhcCCcEEEEEEE
Q 013840 364 QELGNAFQAFGRVLSAKVF 382 (435)
Q Consensus 364 ~~L~~~F~~fG~v~~v~i~ 382 (435)
.+|+++|+..|+|.-+.+-
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 6899999999999776653
No 236
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=48.82 E-value=2.5 Score=41.29 Aligned_cols=72 Identities=15% Similarity=0.145 Sum_probs=55.8
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCC
Q 013840 347 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGG 418 (435)
Q Consensus 347 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~g 418 (435)
...|+|+|+|++.+++-.+|..+|+.+.-+.++.+.......+-..+++|.|+---+-.-|+.+||+..+..
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 456999999999999999999999999888887665443333445568999987777777777787776543
No 237
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=47.16 E-value=18 Score=31.51 Aligned_cols=34 Identities=29% Similarity=0.369 Sum_probs=29.3
Q ss_pred cCccCCceEEEecCCCCCCHHHHHHHHhccCcee
Q 013840 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVD 42 (435)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~ 42 (435)
.......+||+-|+|..+|++.|.++.+.+|-+.
T Consensus 35 s~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq 68 (261)
T KOG4008|consen 35 SNSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQ 68 (261)
T ss_pred cccccccceeeecccccccHHHHHHHHHHhhhhh
Confidence 4456678999999999999999999999998544
No 238
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=45.20 E-value=1e+02 Score=21.43 Aligned_cols=52 Identities=13% Similarity=0.189 Sum_probs=35.3
Q ss_pred CCHHHHHHhhhccC-CeeEEEEecCCCCCcccEEEEEeC-CHHHHHHHHHHHcC
Q 013840 114 VSEAEVSALFSIYG-TIKDLQILRGSQQTSKGCAFLKYE-TKEQALAALEAING 165 (435)
Q Consensus 114 ~t~~~l~~~f~~~g-~i~~v~~~~~~~~~~~g~afV~f~-~~e~a~~a~~~l~~ 165 (435)
-.--++.+.|+.+| .+..|.-...+.......-||++. ..++..++++.+..
T Consensus 12 G~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~~~~~~~~~l~~L~~ 65 (74)
T cd04904 12 GALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEVDRGDLDQLISSLRR 65 (74)
T ss_pred cHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEcChHHHHHHHHHHHH
Confidence 34567888888887 566666655544445567788887 45566778887765
No 239
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.63 E-value=45 Score=31.53 Aligned_cols=55 Identities=20% Similarity=0.263 Sum_probs=45.8
Q ss_pred cceEEEecCCCCCCHHHHHHhhhccCC-eeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHH
Q 013840 102 EHKLFIGMLPKNVSEAEVSALFSIYGT-IKDLQILRGSQQTSKGCAFLKYETKEQALAALEA 162 (435)
Q Consensus 102 ~~~l~v~~lp~~~t~~~l~~~f~~~g~-i~~v~~~~~~~~~~~g~afV~f~~~e~a~~a~~~ 162 (435)
.+.|-|+++|.....+||...|+.|+. --.|.++.+. .||..|.+...|..|+-.
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc------eeEEeecchHHHHHHhhc
Confidence 478999999999988999999999974 3467777653 899999999999999864
No 240
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=41.13 E-value=7.7 Score=38.07 Aligned_cols=68 Identities=10% Similarity=0.086 Sum_probs=52.1
Q ss_pred CCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCC
Q 013840 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKK 80 (435)
Q Consensus 13 ~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~ 80 (435)
-.|+|+++|+++..+-++|..+++.+.-+..+-+..+...+....+.+|.|.---...-|+.+||+..
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~ir 297 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIR 297 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcc
Confidence 35789999999999999999999998656555554444444455588999998887777777777653
No 241
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=35.81 E-value=51 Score=31.13 Aligned_cols=76 Identities=17% Similarity=0.248 Sum_probs=51.7
Q ss_pred ccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEe--cCCC-CCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCC
Q 013840 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIK--DKTT-RASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (435)
Q Consensus 11 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~--~~~~-~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~ 86 (435)
...-..+.|+.||+..++.+|.+-+..|-.-.+-..+. +... ....+.|||.|...++.....+..+|..+++..+
T Consensus 4 ~~~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld~Kg 82 (376)
T KOG1295|consen 4 KEAKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLDNKG 82 (376)
T ss_pred cccceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEecCCC
Confidence 34567899999999999999998888764322211111 1111 1124579999999999888887777766665544
No 242
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=35.29 E-value=1.4e+02 Score=20.03 Aligned_cols=58 Identities=12% Similarity=0.145 Sum_probs=37.8
Q ss_pred EEEeCCCCCCCHHHHHHHhhcCC-cEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCcee
Q 013840 352 LFIYHIPQEFGDQELGNAFQAFG-RVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQL 416 (435)
Q Consensus 352 v~V~nLp~~~t~~~L~~~F~~fG-~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l 416 (435)
|.|.|-|. .-.++.+.|.+.| .|.++.+.... + ++.--+.+.+.+.|.++++. +|+.+
T Consensus 6 v~v~d~pG--~La~v~~~l~~~~inI~~i~~~~~~--~--~~~~rl~~~~~~~~~~~L~~-~G~~v 64 (66)
T cd04908 6 VFLENKPG--RLAAVTEILSEAGINIRALSIADTS--E--FGILRLIVSDPDKAKEALKE-AGFAV 64 (66)
T ss_pred EEEcCCCC--hHHHHHHHHHHCCCCEEEEEEEecC--C--CCEEEEEECCHHHHHHHHHH-CCCEE
Confidence 44444333 3567888888777 68888765432 2 36666777787788888876 56654
No 243
>PRK11901 hypothetical protein; Reviewed
Probab=35.18 E-value=1.5e+02 Score=27.67 Aligned_cols=60 Identities=20% Similarity=0.181 Sum_probs=41.4
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEE--EEeCCHHHHHHHHHhcC
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGF--VSYESPASAQNAIAMMN 412 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~af--V~F~~~~~A~~A~~~l~ 412 (435)
...+|-|-.+ ..++.|.+|..+++ +..++|.....+|+.- |.. =.|.+.++|+.|+..|-
T Consensus 244 ~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sLP 305 (327)
T PRK11901 244 SHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIATLP 305 (327)
T ss_pred CCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHhCC
Confidence 4577777664 45888888888775 4556666554455543 332 25899999999998874
No 244
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=34.68 E-value=52 Score=27.52 Aligned_cols=58 Identities=21% Similarity=0.284 Sum_probs=40.9
Q ss_pred cceEEEecCCCCCCHHHHHHhhhccCCeeEEEEecCCCC--CcccEEEEEeCCHHHHHHHHHHH
Q 013840 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQ--TSKGCAFLKYETKEQALAALEAI 163 (435)
Q Consensus 102 ~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~~~--~~~g~afV~f~~~e~a~~a~~~l 163 (435)
.++++.. +.+...++|.++-+ |.+.++.+.....+ ..+|-.||+|...+.|..+++.-
T Consensus 111 ~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~~ 170 (205)
T KOG4213|consen 111 ERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDTH 170 (205)
T ss_pred Hhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhhh
Confidence 4555554 34444455555555 78899988766544 67899999999999999887653
No 245
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=33.90 E-value=18 Score=34.21 Aligned_cols=60 Identities=13% Similarity=0.024 Sum_probs=48.8
Q ss_pred CceEEEeCCCCCCCH--------HHHHHHhhc--CCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHH
Q 013840 349 GANLFIYHIPQEFGD--------QELGNAFQA--FGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAI 408 (435)
Q Consensus 349 ~~~v~V~nLp~~~t~--------~~L~~~F~~--fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~ 408 (435)
-+.+|+.+.+..-+. +++...|.. .+.+..+...++..+...+|-.|++|...++|++..
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~n 243 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFN 243 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHh
Confidence 367888888765444 499999998 678888888777656778898999999999999886
No 246
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=31.88 E-value=1.6e+02 Score=22.83 Aligned_cols=47 Identities=13% Similarity=0.094 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHhccC-----ceeEEEEEecCCCCCccceEEEEeCCHHHHHHH
Q 013840 25 HMTEAQLLAMFKEFA-----LVDEVNIIKDKTTRASRGCCFVICPSRQEADKA 72 (435)
Q Consensus 25 ~~t~~~l~~~f~~~g-----~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~a 72 (435)
.++.+||+|-++++- .|.-..+...-..+++.|||.| |++.|.|.+.
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akkf 85 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKKF 85 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHhc
Confidence 467788888887642 2222334445667899999988 6888887765
No 247
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=31.10 E-value=1.8e+02 Score=20.04 Aligned_cols=52 Identities=15% Similarity=0.182 Sum_probs=35.7
Q ss_pred CCHHHHHHhhhccC-CeeEEEEecCCCCCcccEEEEEeCC---HHHHHHHHHHHcC
Q 013840 114 VSEAEVSALFSIYG-TIKDLQILRGSQQTSKGCAFLKYET---KEQALAALEAING 165 (435)
Q Consensus 114 ~t~~~l~~~f~~~g-~i~~v~~~~~~~~~~~g~afV~f~~---~e~a~~a~~~l~~ 165 (435)
-.-.++.+.|+.+| .+..|.-............||++.. ......+++.+..
T Consensus 11 G~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~~ 66 (75)
T cd04880 11 GALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKR 66 (75)
T ss_pred CHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 34567889999887 6777765544443455677888874 5666677777654
No 248
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=30.71 E-value=19 Score=34.07 Aligned_cols=64 Identities=20% Similarity=0.194 Sum_probs=51.8
Q ss_pred ccCCceEEEecCCCCCCHH--------HHHHHHhc--cCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHH
Q 013840 11 SEERVKLFVGQVPKHMTEA--------QLLAMFKE--FALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74 (435)
Q Consensus 11 ~~~~~~l~v~nLp~~~t~~--------~l~~~f~~--~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~ 74 (435)
....+.+|+.+.....+.+ ++...|.. .+++..+.+.+|......+|..|++|...+.+++++.
T Consensus 171 ~~~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 171 SQMQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 3445667777777665555 89999988 6788889998887668899999999999999999974
No 249
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=28.87 E-value=2.4e+02 Score=20.73 Aligned_cols=51 Identities=10% Similarity=0.130 Sum_probs=33.3
Q ss_pred CHHHHHHhhhccC-CeeEEEEecCCCCCcccEEEEEeCC--HHHHHHHHHHHcC
Q 013840 115 SEAEVSALFSIYG-TIKDLQILRGSQQTSKGCAFLKYET--KEQALAALEAING 165 (435)
Q Consensus 115 t~~~l~~~f~~~g-~i~~v~~~~~~~~~~~g~afV~f~~--~e~a~~a~~~l~~ 165 (435)
.--++.+.|..+| .+..|.-..........+-||+++- .+....+++.|..
T Consensus 27 sL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg~~~~~~~~~l~~L~~ 80 (90)
T cd04931 27 ALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKKSAPALDPIIKSLRN 80 (90)
T ss_pred HHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCCCHHHHHHHHHHHH
Confidence 4567888888887 5666666554444445677888874 3445667776654
No 250
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=26.81 E-value=79 Score=29.93 Aligned_cols=71 Identities=10% Similarity=0.228 Sum_probs=47.8
Q ss_pred ceEEEecCCCCCCHHHHHHhhhccCCeeEEEEec-CCCC---CcccEEEEEeCCHHHHHHHHHHHcCCCcCCCCc
Q 013840 103 HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILR-GSQQ---TSKGCAFLKYETKEQALAALEAINGKHKMEGSS 173 (435)
Q Consensus 103 ~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~-~~~~---~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~ 173 (435)
..|.|+.||+..+++++.+....+..-.....+. ...+ ...+.|||.|...++........+|..+++...
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld~Kg 82 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLDNKG 82 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEecCCC
Confidence 4578999999999999998887764322222221 1111 125789999999999888877777755554443
No 251
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=26.16 E-value=2.6e+02 Score=21.23 Aligned_cols=42 Identities=17% Similarity=0.169 Sum_probs=29.8
Q ss_pred HHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHH
Q 013840 29 AQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAV 73 (435)
Q Consensus 29 ~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al 73 (435)
.+|..++++.| |.+-.|+.|..+ ..-|||+++.+.+..-.+|
T Consensus 27 PE~~a~lk~ag-i~nYSIfLde~~--n~lFgy~E~~d~~a~m~~~ 68 (105)
T COG3254 27 PELLALLKEAG-IRNYSIFLDEEE--NLLFGYWEYEDFEADMAKM 68 (105)
T ss_pred HHHHHHHHHcC-CceeEEEecCCc--ccEEEEEEEcChHHHHHHH
Confidence 45778889988 677777777644 4459999999655554444
No 252
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=24.65 E-value=61 Score=19.20 Aligned_cols=16 Identities=25% Similarity=0.343 Sum_probs=10.3
Q ss_pred CCCCHHHHHHHHhccC
Q 013840 24 KHMTEAQLLAMFKEFA 39 (435)
Q Consensus 24 ~~~t~~~l~~~f~~~g 39 (435)
.++++++|++.|.+++
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 3578899999998765
No 253
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=23.85 E-value=88 Score=22.59 Aligned_cols=24 Identities=13% Similarity=0.325 Sum_probs=20.6
Q ss_pred ccceEEEEeCCHHHHHHHHHHhcC
Q 013840 55 SRGCCFVICPSRQEADKAVNACHN 78 (435)
Q Consensus 55 ~~g~afV~f~~~e~a~~al~~l~~ 78 (435)
.+||.||+=.+.+++..|++.+.+
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi~~ 66 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGIRH 66 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-TT
T ss_pred CceEEEEEeCCHHHHHHHHhcccc
Confidence 778999999999999999987654
No 254
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=23.20 E-value=2.9e+02 Score=28.10 Aligned_cols=82 Identities=11% Similarity=0.208 Sum_probs=60.0
Q ss_pred ccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCceeeeccCchhc-------------------cccceEEEecCCCCCC
Q 013840 55 SRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELE-------------------RLEHKLFIGMLPKNVS 115 (435)
Q Consensus 55 ~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~~~~~~~~~~-------------------~~~~~l~v~~lp~~~t 115 (435)
..--||+.+.+++.-+..-+.||...++.|...-+--.|.-.-+. .....+|+.+|..++.
T Consensus 235 ~Qi~C~iT~Tn~~TH~iIr~Nl~rSpmysG~Ieg~GPRYCPSIEDKIvrF~dK~~HqIFlEPEGl~~~evY~nGlSTSlP 314 (621)
T COG0445 235 PQIPCYITYTNEKTHEIIRDNLHRSPMYSGEIEGVGPRYCPSIEDKIVRFADKERHQIFLEPEGLDTDEVYPNGLSTSLP 314 (621)
T ss_pred cccceeeecCChHHHHHHHHhhhhCchhcccccccCCCCCCCHHHhhccCCCCccceEEecCCCCCCceEecCcccccCC
Confidence 344799999999999998888888877776544443333321111 1146799999998888
Q ss_pred HHHHHHhhhccCCeeEEEEec
Q 013840 116 EAEVSALFSIYGTIKDLQILR 136 (435)
Q Consensus 116 ~~~l~~~f~~~g~i~~v~~~~ 136 (435)
++.=.++.....-.+++++.+
T Consensus 315 ~dVQ~~~irsipGlEna~i~r 335 (621)
T COG0445 315 EDVQEQIIRSIPGLENAEILR 335 (621)
T ss_pred HHHHHHHHHhCcccccceeec
Confidence 888888888888888888876
No 255
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=23.05 E-value=3.1e+02 Score=20.10 Aligned_cols=45 Identities=13% Similarity=0.082 Sum_probs=33.3
Q ss_pred HHHHHHHhhcCC-cEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhc
Q 013840 363 DQELGNAFQAFG-RVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 411 (435)
Q Consensus 363 ~~~L~~~F~~fG-~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l 411 (435)
.+.+++++++.| ++++..+... ..=....+++.+.+.|.++...+
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G----~yD~v~i~eaPD~~~a~~~~l~i 67 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLG----EYDFVVIVEAPDDETAAAASLAI 67 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecC----CCCEEEEEEcCCHHHHHHHHHHH
Confidence 356777887776 7888887654 34467899999999988876554
No 256
>PRK11901 hypothetical protein; Reviewed
Probab=22.18 E-value=1.3e+02 Score=27.88 Aligned_cols=50 Identities=8% Similarity=0.160 Sum_probs=34.2
Q ss_pred CCHHHHHHhhhccCCeeEEEEecCC-CCCcccEEEE--EeCCHHHHHHHHHHHcC
Q 013840 114 VSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFL--KYETKEQALAALEAING 165 (435)
Q Consensus 114 ~t~~~l~~~f~~~g~i~~v~~~~~~-~~~~~g~afV--~f~~~e~a~~a~~~l~~ 165 (435)
..++.|..+...++ +..+.++... +|+ ..|..| .|.+.++|+.|++.|-.
T Consensus 254 s~~~~L~~f~~~~~-L~~~~VYqT~RnGk-pWYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 254 SRSDTLNAYAKKQN-LSHYHVYETKRDGK-PWYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CCHHHHHHHHHHcC-cCceEEEEEEECCc-eEEEEEecCcCCHHHHHHHHHhCCH
Confidence 56778888888775 4556665443 333 334444 89999999999998754
No 257
>TIGR01033 DNA-binding regulatory protein, YebC/PmpR family. This model describes a minimally characterized protein family, restricted to bacteria excepting for some eukaryotic sequences that have possible transit peptides. YebC from E. coli is crystallized, and PA0964 from Pseudomonas aeruginosa has been shown to be a sequence-specific DNA-binding regulatory protein.
Probab=21.60 E-value=3.7e+02 Score=23.94 Aligned_cols=57 Identities=16% Similarity=0.234 Sum_probs=39.7
Q ss_pred CCCCceEEEeCCCCCC--CHHHHHHHhhcCCcE----EEEEEEeeCCCCCcceEEEEEeC----CHHHHHHHHH
Q 013840 346 GPPGANLFIYHIPQEF--GDQELGNAFQAFGRV----LSAKVFVDKATGVSKCFGFVSYE----SPASAQNAIA 409 (435)
Q Consensus 346 ~~~~~~v~V~nLp~~~--t~~~L~~~F~~fG~v----~~v~i~~~~~~g~~~g~afV~F~----~~~~A~~A~~ 409 (435)
+|.+..|+|.-|-.+. |..+|+.+|.++|-- -+|..+.++ .|.|.|. +.+++..+..
T Consensus 91 gP~GvaiiVe~lTDN~nRt~~~ir~~f~K~gg~l~~~gsv~~~Fe~-------kG~i~~~~~~~~~d~~~e~ai 157 (238)
T TIGR01033 91 APGGVAIIVECLTDNKNRTASEVRSAFNKNGGSLGEPGSVSYLFSR-------KGVIEVPKNEVDEEDLMEAAI 157 (238)
T ss_pred cCCceEEEEEEecCCHHhHHHHHHHHHHHcCCeeCCCCceeeeeec-------ceEEEECCCCCCHHHHHHHHH
Confidence 4677889999886554 678999999998853 346777775 4777774 3455555443
No 258
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=21.38 E-value=1.8e+02 Score=27.18 Aligned_cols=56 Identities=18% Similarity=0.197 Sum_probs=33.7
Q ss_pred EEEEeCCHHHHHHHHHHhcCCCcCCCCCCceeeeccCchhccccceEEEecCCCCCCHHHHHHhhh
Q 013840 59 CFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFS 124 (435)
Q Consensus 59 afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~ 124 (435)
|||.|.+..+|..|++.+...+ .....+..+ ++.. -|.=.|+..+..+..++..+.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~-----~~~~~v~~A-PeP~----DI~W~NL~~~~~~r~~R~~~~ 56 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR-----PNSWRVSPA-PEPD----DIIWENLSISSKQRFLRRIIV 56 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC-----CCCceEeeC-CCcc----cccccccCCChHHHHHHHHHH
Confidence 7999999999999999765432 133333322 2222 244567755555555555443
No 259
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=21.25 E-value=4.2e+02 Score=20.96 Aligned_cols=72 Identities=15% Similarity=0.122 Sum_probs=48.9
Q ss_pred CCceEEEeCCCCC---CCHHHHHHHhhcCC-cEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEE
Q 013840 348 PGANLFIYHIPQE---FGDQELGNAFQAFG-RVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKV 423 (435)
Q Consensus 348 ~~~~v~V~nLp~~---~t~~~L~~~F~~fG-~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v 423 (435)
+...|.|++.... .+-..+.+....-| .++++.. +. +-..|.|.+.++-.+|.+.+...-=.+-.|.+
T Consensus 34 edpavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~--~~------~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAl 105 (127)
T PRK10629 34 QESTLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITP--EN------DSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQ 105 (127)
T ss_pred CCceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEe--eC------CEEEEEECCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 3456777766333 46678888888777 3455444 21 25899999999999999887554434457777
Q ss_pred EEcc
Q 013840 424 QLKR 427 (435)
Q Consensus 424 ~~a~ 427 (435)
.++.
T Consensus 106 nl~p 109 (127)
T PRK10629 106 QDDN 109 (127)
T ss_pred ecCC
Confidence 7665
No 260
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.18 E-value=3.2e+02 Score=21.11 Aligned_cols=51 Identities=12% Similarity=0.242 Sum_probs=32.2
Q ss_pred CHHHHHHhhhccC-CeeEEEEecCCCCCcccEEEEEeC-CHHHHHHHHHHHcC
Q 013840 115 SEAEVSALFSIYG-TIKDLQILRGSQQTSKGCAFLKYE-TKEQALAALEAING 165 (435)
Q Consensus 115 t~~~l~~~f~~~g-~i~~v~~~~~~~~~~~g~afV~f~-~~e~a~~a~~~l~~ 165 (435)
.--++.+.|..+| .+..|.-...+........||.+. +.++...+++.|..
T Consensus 54 sL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdieg~~~~~~~aL~~L~~ 106 (115)
T cd04930 54 SLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCEVHRSDLLQLISSLRQ 106 (115)
T ss_pred HHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEEeCHHHHHHHHHHHHH
Confidence 4566778888887 566666554433334456677775 34556677777764
No 261
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=20.96 E-value=2e+02 Score=20.87 Aligned_cols=53 Identities=8% Similarity=0.224 Sum_probs=39.1
Q ss_pred cCCCCCCHHHHHHhhhc-cC-CeeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHH
Q 013840 109 MLPKNVSEAEVSALFSI-YG-TIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAI 163 (435)
Q Consensus 109 ~lp~~~t~~~l~~~f~~-~g-~i~~v~~~~~~~~~~~g~afV~f~~~e~a~~a~~~l 163 (435)
..+...+..+|++.++. || +|..|.....+. ...-|||++...++|.+.-..+
T Consensus 27 ~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~--~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 27 IVDRRATKPDIKRAVEELFDVKVEKVNTLITPK--GEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC--CcEEEEEEeCCCCcHHHHHHhh
Confidence 44788999999999986 45 567776655543 2457999999999988875543
No 262
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=20.79 E-value=2.6e+02 Score=18.28 Aligned_cols=54 Identities=19% Similarity=0.128 Sum_probs=41.1
Q ss_pred eEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCH----HHHHHHHHh
Q 013840 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESP----ASAQNAIAM 410 (435)
Q Consensus 351 ~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~----~~A~~A~~~ 410 (435)
|+.|.||...--...+...+.....|.++.+-.. .+.+-|.|... ++...+++.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~------~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLE------TKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECC------CCEEEEEEecCCCCHHHHHHHHHH
Confidence 5778888777778899999999999999988543 34688888744 566666665
No 263
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=20.74 E-value=1.3e+02 Score=20.40 Aligned_cols=32 Identities=28% Similarity=0.431 Sum_probs=22.4
Q ss_pred HHHHHHHHhccCceeEEEEEecCCCCCccceEEE
Q 013840 28 EAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFV 61 (435)
Q Consensus 28 ~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV 61 (435)
+.+|...|-.-..|.++.+.-.|. ..+|-|||
T Consensus 32 e~eler~fl~~P~v~e~~l~EKKr--i~~G~gyV 63 (64)
T PF13046_consen 32 EVELERHFLPLPEVKEVALYEKKR--IRKGAGYV 63 (64)
T ss_pred HHHhhhhccCCCCceEEEEEEEEe--eeCCceeE
Confidence 456777777777888888877663 35566666
No 264
>COG0217 Uncharacterized conserved protein [Function unknown]
Probab=20.07 E-value=5.5e+02 Score=22.84 Aligned_cols=59 Identities=19% Similarity=0.269 Sum_probs=41.4
Q ss_pred cCCCCceEEEeCCCCC--CCHHHHHHHhhcCCc-E---EEEEEEeeCCCCCcceEEEEEeC----CHHHHHHHHHh
Q 013840 345 EGPPGANLFIYHIPQE--FGDQELGNAFQAFGR-V---LSAKVFVDKATGVSKCFGFVSYE----SPASAQNAIAM 410 (435)
Q Consensus 345 ~~~~~~~v~V~nLp~~--~t~~~L~~~F~~fG~-v---~~v~i~~~~~~g~~~g~afV~F~----~~~~A~~A~~~ 410 (435)
.+|.+.-|+|..|-.+ =|..+++..|.+.|. + =+|..+.++ .|.|.|. +.++...++..
T Consensus 90 ygP~GvaiiVe~LTDN~NRTas~vR~~F~K~GG~lg~~GSV~~mF~~-------kGvi~~~~~~~~ed~l~e~~ie 158 (241)
T COG0217 90 YGPGGVAIIVEALTDNRNRTASNVRSAFNKNGGNLGEPGSVSYMFDR-------KGVIVVEKNEIDEDELLEAAIE 158 (241)
T ss_pred ECCCceEEEEEeccCCcchhHHHHHHHHHhcCCccCCCceEEEEEec-------cEEEEECCCCCCHHHHHHHHHH
Confidence 3557788999999554 577899999998773 2 368888885 3566665 45555555443
No 265
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=20.05 E-value=1.3e+02 Score=20.83 Aligned_cols=26 Identities=12% Similarity=0.209 Sum_probs=21.3
Q ss_pred EEEEEeCCHHHHHHHHHhcCCceeCC
Q 013840 393 FGFVSYESPASAQNAIAMMNGCQLGG 418 (435)
Q Consensus 393 ~afV~F~~~~~A~~A~~~l~g~~l~g 418 (435)
+.+|.|.+..+|.+|-+.|...-+..
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi~~ 28 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGIPV 28 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCcE
Confidence 68999999999999998887665433
Done!