Query 013840
Match_columns 435
No_of_seqs 161 out of 2254
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 18:05:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013840.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013840hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ghp_A U4/U6 snRNA-associated 100.0 8.4E-45 2.9E-49 336.3 26.9 255 8-430 35-292 (292)
2 3smz_A Protein raver-1, ribonu 100.0 3.9E-44 1.3E-48 330.5 28.8 248 9-431 17-266 (284)
3 4f02_A Polyadenylate-binding p 100.0 1.1E-32 3.8E-37 242.3 21.8 167 102-430 15-182 (213)
4 3nmr_A Cugbp ELAV-like family 100.0 2.9E-32 1E-36 232.4 22.6 170 13-182 2-175 (175)
5 3md3_A Nuclear and cytoplasmic 100.0 4.1E-32 1.4E-36 229.4 21.6 165 103-427 1-165 (166)
6 2qfj_A FBP-interacting repress 100.0 7.3E-32 2.5E-36 238.2 24.0 181 102-433 28-209 (216)
7 4f02_A Polyadenylate-binding p 100.0 3.7E-32 1.3E-36 238.9 19.7 177 8-191 9-188 (213)
8 1l3k_A Heterogeneous nuclear r 100.0 3.6E-31 1.2E-35 230.0 21.7 177 99-433 10-187 (196)
9 1fxl_A Paraneoplastic encephal 100.0 5.2E-31 1.8E-35 222.9 21.8 164 14-181 2-167 (167)
10 3nmr_A Cugbp ELAV-like family 100.0 3.8E-31 1.3E-35 225.5 20.1 167 102-427 3-175 (175)
11 1fxl_A Paraneoplastic encephal 100.0 6.6E-31 2.3E-35 222.2 20.5 163 102-426 2-167 (167)
12 1b7f_A Protein (SXL-lethal pro 100.0 5.2E-31 1.8E-35 223.1 19.6 163 102-426 3-168 (168)
13 1b7f_A Protein (SXL-lethal pro 100.0 8.8E-31 3E-35 221.7 20.6 165 13-181 2-168 (168)
14 2cjk_A Nuclear polyadenylated 100.0 2.8E-31 9.7E-36 224.5 15.0 164 102-430 3-167 (167)
15 1l3k_A Heterogeneous nuclear r 100.0 5.2E-30 1.8E-34 222.7 19.1 175 7-189 6-188 (196)
16 2qfj_A FBP-interacting repress 100.0 1.5E-29 5.1E-34 223.3 21.3 169 10-184 24-205 (216)
17 3pgw_A U1-A; protein-RNA compl 100.0 1.7E-28 5.7E-33 225.7 28.7 79 345-428 203-282 (282)
18 3md3_A Nuclear and cytoplasmic 100.0 1.3E-29 4.4E-34 214.0 19.0 161 15-182 1-165 (166)
19 2cjk_A Nuclear polyadenylated 100.0 7.2E-30 2.5E-34 215.8 15.1 164 12-184 1-166 (167)
20 2g4b_A Splicing factor U2AF 65 100.0 3.6E-29 1.2E-33 212.6 19.1 157 102-426 4-171 (172)
21 2yh0_A Splicing factor U2AF 65 100.0 1.1E-28 3.7E-33 214.7 21.0 183 102-432 4-197 (198)
22 1fje_B Nucleolin RBD12, protei 100.0 3.2E-30 1.1E-34 219.8 9.1 165 100-430 11-175 (175)
23 3smz_A Protein raver-1, ribonu 100.0 5.3E-28 1.8E-32 222.5 21.2 176 12-193 93-273 (284)
24 3tyt_A Heterogeneous nuclear r 100.0 5.4E-28 1.8E-32 209.9 18.0 194 102-426 4-204 (205)
25 3tyt_A Heterogeneous nuclear r 100.0 6.7E-28 2.3E-32 209.3 17.4 160 12-181 2-204 (205)
26 2adc_A Polypyrimidine tract-bi 100.0 3.8E-27 1.3E-31 209.4 22.1 193 101-429 33-228 (229)
27 3sde_A Paraspeckle component 1 100.0 2.1E-27 7.2E-32 215.2 20.8 157 101-431 21-181 (261)
28 2g4b_A Splicing factor U2AF 65 100.0 9.3E-28 3.2E-32 203.8 17.1 157 12-181 2-171 (172)
29 1qm9_A Polypyrimidine tract-bi 100.0 2.7E-27 9.3E-32 205.8 19.0 192 102-429 3-197 (198)
30 1fje_B Nucleolin RBD12, protei 100.0 2.2E-28 7.7E-33 208.3 11.4 165 8-184 7-174 (175)
31 2adc_A Polypyrimidine tract-bi 99.9 1.9E-26 6.4E-31 204.9 21.0 160 9-183 29-227 (229)
32 3sde_A Paraspeckle component 1 99.9 1.4E-26 4.7E-31 209.9 19.8 164 7-184 15-179 (261)
33 3pgw_A U1-A; protein-RNA compl 99.9 1.9E-26 6.6E-31 211.9 20.2 162 9-182 4-281 (282)
34 2yh0_A Splicing factor U2AF 65 99.9 6.1E-27 2.1E-31 203.6 15.9 160 12-184 2-194 (198)
35 1qm9_A Polypyrimidine tract-bi 99.9 2E-26 6.9E-31 200.2 16.4 156 13-183 2-196 (198)
36 2ghp_A U4/U6 snRNA-associated 99.9 1.8E-26 6.1E-31 213.2 15.6 165 12-184 115-291 (292)
37 2kn4_A Immunoglobulin G-bindin 99.9 6.4E-23 2.2E-27 171.2 14.6 86 348-433 69-154 (158)
38 4fxv_A ELAV-like protein 1; RN 99.9 1.1E-22 3.8E-27 154.7 12.2 81 348-428 18-98 (99)
39 3s8s_A Histone-lysine N-methyl 99.9 1.9E-21 6.6E-26 150.7 12.3 85 347-431 4-88 (110)
40 2lxi_A RNA-binding protein 10; 99.9 5.4E-22 1.9E-26 148.5 6.5 84 349-432 1-86 (91)
41 2cpz_A CUG triplet repeat RNA- 99.9 9.4E-21 3.2E-25 148.9 13.8 90 345-434 21-110 (115)
42 2cq0_A Eukaryotic translation 99.9 8.6E-21 2.9E-25 146.0 13.3 90 345-434 11-100 (103)
43 3md1_A Nuclear and cytoplasmic 99.8 1.2E-20 4.1E-25 139.1 12.4 82 350-431 2-83 (83)
44 2lkz_A RNA-binding protein 5; 99.8 2.1E-21 7.1E-26 145.7 8.0 81 348-428 8-94 (95)
45 2do4_A Squamous cell carcinoma 99.8 3E-20 1E-24 142.1 14.2 86 346-432 14-99 (100)
46 2cqc_A Arginine/serine-rich sp 99.8 2.4E-20 8E-25 141.3 13.0 84 345-428 11-94 (95)
47 2dgo_A Cytotoxic granule-assoc 99.8 3.4E-20 1.2E-24 145.7 14.4 88 345-432 11-98 (115)
48 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.6E-20 5.5E-25 139.7 11.8 82 348-429 5-86 (87)
49 4f25_A Polyadenylate-binding p 99.8 1.5E-20 5E-25 147.5 12.0 83 348-432 4-86 (115)
50 2e5h_A Zinc finger CCHC-type a 99.8 2.5E-20 8.7E-25 140.8 12.4 82 346-427 13-94 (94)
51 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1.2E-20 4.2E-25 144.9 10.6 89 346-434 9-97 (102)
52 2dnz_A Probable RNA-binding pr 99.8 2E-20 6.8E-25 141.7 11.6 87 348-434 4-90 (95)
53 2dnh_A Bruno-like 5, RNA bindi 99.8 4.2E-20 1.4E-24 142.7 13.4 88 346-434 12-102 (105)
54 3mdf_A Peptidyl-prolyl CIS-tra 99.8 2.2E-20 7.5E-25 138.3 11.1 81 347-427 5-85 (85)
55 1x5u_A Splicing factor 3B subu 99.8 2.7E-20 9.2E-25 143.8 12.0 89 345-433 11-99 (105)
56 2i2y_A Fusion protein consists 99.8 1.5E-20 5.1E-25 155.2 11.1 78 348-430 72-149 (150)
57 1whw_A Hypothetical protein ri 99.8 3.1E-20 1.1E-24 141.7 12.1 87 347-433 6-92 (99)
58 1x5s_A Cold-inducible RNA-bind 99.8 1.5E-20 5.1E-25 144.4 10.2 88 346-433 9-96 (102)
59 2khc_A Testis-specific RNP-typ 99.8 5.4E-20 1.8E-24 145.3 13.6 84 344-427 35-118 (118)
60 2dgs_A DAZ-associated protein 99.8 3.5E-20 1.2E-24 141.4 11.7 86 347-433 8-93 (99)
61 2dng_A Eukaryotic translation 99.8 9.2E-20 3.1E-24 140.2 13.8 85 347-433 13-97 (103)
62 2x1f_A MRNA 3'-END-processing 99.8 2.3E-20 8E-25 141.5 10.2 85 348-432 1-85 (96)
63 2d9p_A Polyadenylate-binding p 99.8 5.9E-20 2E-24 141.3 12.6 87 346-434 12-98 (103)
64 1x4h_A RNA-binding protein 28; 99.8 6.3E-20 2.1E-24 143.3 12.8 88 346-433 12-105 (111)
65 2dnm_A SRP46 splicing factor; 99.8 2.5E-20 8.6E-25 143.4 10.3 87 347-433 11-97 (103)
66 2cpf_A RNA binding motif prote 99.8 4.9E-20 1.7E-24 140.4 11.7 86 348-433 4-92 (98)
67 1x5t_A Splicing factor 3B subu 99.8 2.5E-20 8.6E-25 141.4 10.0 86 348-433 4-90 (96)
68 2jrs_A RNA-binding protein 39; 99.8 5.7E-20 2E-24 142.2 12.1 84 347-430 24-107 (108)
69 3p5t_L Cleavage and polyadenyl 99.8 5.7E-21 1.9E-25 142.9 6.2 85 350-434 2-88 (90)
70 1u6f_A Tcubp1, RNA-binding pro 99.8 3.2E-19 1.1E-23 145.2 17.0 89 346-434 39-127 (139)
71 4f25_A Polyadenylate-binding p 99.8 2E-20 6.9E-25 146.7 9.4 102 12-118 3-113 (115)
72 2cqd_A RNA-binding region cont 99.8 9.2E-20 3.1E-24 143.4 13.0 88 345-433 13-100 (116)
73 2cph_A RNA binding motif prote 99.8 6.5E-20 2.2E-24 142.1 12.0 88 346-433 12-101 (107)
74 1p27_B RNA-binding protein 8A; 99.8 6.4E-20 2.2E-24 141.9 11.5 85 347-431 21-105 (106)
75 2la6_A RNA-binding protein FUS 99.8 6.7E-20 2.3E-24 139.8 11.4 81 347-427 11-99 (99)
76 2dgp_A Bruno-like 4, RNA bindi 99.8 3.9E-20 1.3E-24 143.2 10.2 88 346-433 10-100 (106)
77 1oo0_B CG8781-PA, drosophila Y 99.8 5.6E-20 1.9E-24 143.2 11.2 86 347-432 24-109 (110)
78 2cqp_A RNA-binding protein 12; 99.8 6E-20 2.1E-24 139.9 10.8 85 347-431 13-97 (98)
79 2cqi_A Nucleolysin TIAR; RNA r 99.8 1.9E-19 6.6E-24 138.4 13.7 87 345-433 11-97 (103)
80 1wi8_A EIF-4B, eukaryotic tran 99.8 1.1E-19 3.9E-24 139.9 12.3 85 347-433 13-98 (104)
81 2do0_A HnRNP M, heterogeneous 99.8 2.7E-19 9.4E-24 140.3 14.6 86 346-432 12-97 (114)
82 3r27_A HnRNP L, heterogeneous 99.8 6.7E-20 2.3E-24 137.2 10.4 79 346-430 18-98 (100)
83 3ns6_A Eukaryotic translation 99.8 9.8E-21 3.4E-25 144.5 6.0 83 348-430 5-94 (100)
84 2cpe_A RNA-binding protein EWS 99.8 7.9E-20 2.7E-24 143.1 11.3 89 345-433 11-107 (113)
85 2kxn_B Transformer-2 protein h 99.8 4.8E-20 1.6E-24 147.3 9.9 87 345-431 42-128 (129)
86 2ywk_A Putative RNA-binding pr 99.8 9.3E-20 3.2E-24 138.0 11.0 81 347-428 14-94 (95)
87 2cq3_A RNA-binding protein 9; 99.8 3.7E-19 1.3E-23 136.8 14.3 87 345-433 11-97 (103)
88 2dgx_A KIAA0430 protein; RRM d 99.8 1.4E-19 4.6E-24 137.1 11.4 84 348-434 8-95 (96)
89 2div_A TRNA selenocysteine ass 99.8 1.1E-19 3.6E-24 138.8 10.6 84 348-431 8-96 (99)
90 3ucg_A Polyadenylate-binding p 99.8 1.9E-19 6.7E-24 134.4 11.5 83 348-431 5-87 (89)
91 2dhg_A TRNA selenocysteine ass 99.8 1.1E-19 3.6E-24 140.2 10.3 86 347-433 7-94 (104)
92 2dh8_A DAZ-associated protein 99.8 1.3E-19 4.5E-24 139.9 10.7 87 346-433 13-99 (105)
93 4a8x_A RNA-binding protein wit 99.8 1.6E-19 5.6E-24 134.6 10.6 83 348-430 3-86 (88)
94 2wbr_A GW182, gawky, LD47780P; 99.8 1.2E-19 4.2E-24 130.4 9.4 74 348-427 6-79 (89)
95 2kn4_A Immunoglobulin G-bindin 99.8 1.3E-19 4.6E-24 150.9 11.2 137 43-184 2-150 (158)
96 1x4a_A Splicing factor, argini 99.8 4.4E-19 1.5E-23 137.8 13.4 86 346-434 19-104 (109)
97 2rs2_A Musashi-1, RNA-binding 99.8 1.7E-19 5.8E-24 139.8 10.9 87 346-433 22-108 (109)
98 2fy1_A RNA-binding motif prote 99.8 1.5E-19 5.3E-24 141.7 10.6 85 347-432 5-89 (116)
99 1sjq_A Polypyrimidine tract-bi 99.8 9.3E-20 3.2E-24 137.9 8.9 80 347-432 14-95 (105)
100 2m2b_A RNA-binding protein 10; 99.8 4.1E-20 1.4E-24 148.6 7.3 85 347-432 21-111 (131)
101 2cqg_A TDP-43, TAR DNA-binding 99.8 8.7E-19 3E-23 134.7 14.3 85 346-432 12-96 (103)
102 3s7r_A Heterogeneous nuclear r 99.8 4E-19 1.4E-23 132.1 12.0 79 347-426 9-87 (87)
103 3ulh_A THO complex subunit 4; 99.8 3.9E-19 1.4E-23 137.7 12.3 81 347-428 27-107 (107)
104 2ek1_A RNA-binding protein 12; 99.8 7.9E-20 2.7E-24 138.4 8.2 81 348-428 14-94 (95)
105 2dgv_A HnRNP M, heterogeneous 99.8 2.6E-19 8.9E-24 134.6 10.9 83 348-432 7-89 (92)
106 1wex_A Hypothetical protein (r 99.8 2.6E-19 8.7E-24 136.7 10.7 83 346-434 12-96 (104)
107 4fxv_A ELAV-like protein 1; RN 99.8 2.5E-19 8.5E-24 136.1 10.5 85 9-96 14-98 (99)
108 2dgw_A Probable RNA-binding pr 99.8 6.2E-19 2.1E-23 132.2 12.5 82 348-432 9-90 (91)
109 2kt5_A RNA and export factor-b 99.8 1.5E-18 5.2E-23 138.1 15.5 87 347-434 33-119 (124)
110 1x4d_A Matrin 3; structural ge 99.8 1.6E-19 5.6E-24 136.6 9.3 79 347-431 13-94 (102)
111 1h2v_Z 20 kDa nuclear CAP bind 99.8 6.1E-19 2.1E-23 146.5 13.6 88 347-434 37-124 (156)
112 3ex7_B RNA-binding protein 8A; 99.8 2E-19 6.7E-24 143.8 10.2 87 347-433 20-106 (126)
113 3n9u_C Cleavage and polyadenyl 99.8 2.7E-19 9.1E-24 147.6 11.1 82 348-429 54-137 (156)
114 1x4b_A Heterogeneous nuclear r 99.8 2.7E-19 9.2E-24 140.7 10.5 85 348-433 26-110 (116)
115 1s79_A Lupus LA protein; RRM, 99.8 1.4E-19 4.9E-24 138.2 8.6 79 348-428 10-88 (103)
116 2err_A Ataxin-2-binding protei 99.8 2.1E-19 7.1E-24 139.4 9.5 84 345-430 25-108 (109)
117 2cq1_A PTB-like protein L; RRM 99.8 9E-19 3.1E-23 132.8 12.4 81 346-432 12-94 (101)
118 1p1t_A Cleavage stimulation fa 99.8 2.7E-19 9.1E-24 137.9 9.4 84 348-431 7-90 (104)
119 1x4e_A RNA binding motif, sing 99.8 5.1E-20 1.8E-24 136.3 4.9 81 348-428 4-84 (85)
120 2j76_E EIF-4B, EIF4B, eukaryot 99.8 9E-20 3.1E-24 139.2 6.3 82 347-430 17-99 (100)
121 2fc9_A NCL protein; structure 99.8 9E-19 3.1E-23 134.1 12.0 84 346-433 12-95 (101)
122 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 9E-19 3.1E-23 142.8 12.4 81 346-426 60-140 (140)
123 2cq4_A RNA binding motif prote 99.8 2.3E-19 7.7E-24 140.7 8.3 83 348-431 24-106 (114)
124 1wez_A HnRNP H', FTP-3, hetero 99.8 5.8E-19 2E-23 134.8 10.0 83 347-432 13-95 (102)
125 2db1_A Heterogeneous nuclear r 99.8 4.4E-19 1.5E-23 139.5 9.3 81 347-429 15-98 (118)
126 2cpi_A CCR4-NOT transcription 99.8 7.8E-19 2.7E-23 136.7 10.4 83 348-430 14-102 (111)
127 2ad9_A Polypyrimidine tract-bi 99.8 6.4E-19 2.2E-23 136.8 9.7 82 346-433 28-111 (119)
128 2jwn_A Embryonic polyadenylate 99.8 1.2E-18 4E-23 138.8 11.6 84 348-432 35-118 (124)
129 2fc8_A NCL protein; structure 99.8 1.9E-18 6.5E-23 132.5 12.3 85 346-433 12-96 (102)
130 2dis_A Unnamed protein product 99.8 6.6E-19 2.3E-23 136.9 9.5 85 348-432 7-95 (109)
131 2cpy_A RNA-binding protein 12; 99.8 3.8E-19 1.3E-23 139.2 8.1 82 347-430 13-95 (114)
132 1x5o_A RNA binding motif, sing 99.8 3.6E-18 1.2E-22 133.8 13.6 82 347-429 23-112 (114)
133 2mss_A Protein (musashi1); RNA 99.8 2.5E-19 8.5E-24 129.1 6.1 75 351-426 1-75 (75)
134 1wg5_A Heterogeneous nuclear r 99.8 1.3E-18 4.4E-23 133.7 10.5 82 347-430 13-95 (104)
135 2nlw_A Eukaryotic translation 99.8 9.2E-19 3.2E-23 134.8 9.4 82 348-431 14-102 (105)
136 2a3j_A U1 small nuclear ribonu 99.8 1E-18 3.5E-23 138.4 9.8 81 347-430 27-111 (127)
137 1rk8_A CG8781-PA, CG8781-PA pr 99.8 2E-18 6.9E-23 144.6 12.1 86 347-432 70-155 (165)
138 2dnn_A RNA-binding protein 12; 99.8 6.9E-19 2.4E-23 135.5 8.5 79 348-429 15-93 (109)
139 1uaw_A Mouse-musashi-1; RNP-ty 99.8 2.9E-19 9.8E-24 129.6 5.8 76 350-426 1-76 (77)
140 2ki2_A SS-DNA binding protein 99.8 1.2E-19 4.1E-24 135.9 3.8 82 350-432 2-83 (90)
141 2dnq_A RNA-binding protein 4B; 99.8 2.3E-18 7.7E-23 128.8 10.8 79 347-433 6-84 (90)
142 2lea_A Serine/arginine-rich sp 99.8 3.8E-19 1.3E-23 143.3 6.9 85 348-432 46-130 (135)
143 2cpx_A Hypothetical protein FL 99.8 7E-19 2.4E-23 138.2 8.2 88 347-434 23-110 (115)
144 2hgl_A HNRPF protein, heteroge 99.8 6.8E-19 2.3E-23 141.0 8.1 81 347-429 42-125 (136)
145 1why_A Hypothetical protein ri 99.8 3.4E-18 1.2E-22 129.8 11.4 80 347-432 15-96 (97)
146 2ytc_A PRE-mRNA-splicing facto 99.8 3.3E-18 1.1E-22 126.5 11.1 76 346-427 9-85 (85)
147 1fj7_A Nucleolin RBD1, protein 99.8 1.9E-19 6.4E-24 137.9 4.4 84 348-433 16-99 (101)
148 2lxi_A RNA-binding protein 10; 99.8 3.2E-19 1.1E-23 133.4 5.5 85 14-100 1-86 (91)
149 1x4c_A Splicing factor, argini 99.8 5.8E-18 2E-22 131.1 12.9 78 348-432 14-96 (108)
150 1wel_A RNA-binding protein 12; 99.8 7.2E-19 2.4E-23 139.9 7.7 82 348-430 24-105 (124)
151 2jvr_A Nucleolar protein 3; RN 99.8 1.8E-18 6.3E-23 133.3 9.3 79 348-430 27-106 (111)
152 2dgt_A RNA-binding protein 30; 99.8 5.3E-18 1.8E-22 127.3 11.5 81 346-434 7-87 (92)
153 2e5j_A Methenyltetrahydrofolat 99.8 4.3E-18 1.5E-22 129.1 10.7 81 346-431 16-96 (97)
154 2xnq_A Nuclear polyadenylated 99.8 6.4E-18 2.2E-22 128.0 11.5 77 346-430 19-96 (97)
155 1x4g_A Nucleolysin TIAR; struc 99.8 4.2E-18 1.4E-22 132.2 10.6 82 346-433 22-103 (109)
156 2jvo_A Nucleolar protein 3; nu 99.8 3.2E-18 1.1E-22 132.3 9.7 79 346-432 28-106 (108)
157 2cpj_A Non-POU domain-containi 99.8 3.4E-18 1.2E-22 130.3 9.6 80 346-431 12-91 (99)
158 2dgu_A Heterogeneous nuclear r 99.8 8.2E-18 2.8E-22 129.1 11.6 78 348-433 10-87 (103)
159 2cpd_A Apobec-1 stimulating pr 99.7 1.6E-17 5.5E-22 126.5 13.1 79 347-433 13-93 (99)
160 2krb_A Eukaryotic translation 99.7 9.6E-19 3.3E-23 128.0 6.0 74 349-424 1-81 (81)
161 1x4f_A Matrin 3; structural ge 99.7 2.4E-18 8.4E-23 132.0 8.3 81 346-432 22-105 (112)
162 1nu4_A U1A RNA binding domain; 99.7 2.5E-18 8.4E-23 130.6 8.2 83 346-431 5-91 (97)
163 2hvz_A Splicing factor, argini 99.7 1.8E-18 6.1E-23 132.4 7.5 79 350-433 1-79 (101)
164 2dnp_A RNA-binding protein 14; 99.7 8.3E-18 2.8E-22 125.7 10.8 78 347-432 7-84 (90)
165 3pgw_S U1-70K; protein-RNA com 99.7 2.8E-18 9.5E-23 165.3 10.2 84 348-431 101-184 (437)
166 3s8s_A Histone-lysine N-methyl 99.7 6.4E-18 2.2E-22 130.8 10.3 84 11-97 3-86 (110)
167 1fjc_A Nucleolin RBD2, protein 99.7 5.4E-18 1.8E-22 128.4 9.6 82 347-433 14-95 (96)
168 2dgp_A Bruno-like 4, RNA bindi 99.7 9.3E-18 3.2E-22 129.6 11.0 93 7-99 6-98 (106)
169 2j8a_A Histone-lysine N-methyl 99.7 4.4E-18 1.5E-22 130.6 8.8 80 350-429 3-96 (136)
170 2la4_A Nuclear and cytoplasmic 99.7 3.5E-18 1.2E-22 130.8 8.3 76 348-429 26-101 (101)
171 2lkz_A RNA-binding protein 5; 99.7 2.5E-18 8.4E-23 128.9 7.2 85 10-96 5-94 (95)
172 2lmi_A GRSF-1, G-rich sequence 99.7 6.8E-19 2.3E-23 136.1 4.3 82 347-430 9-93 (107)
173 2diu_A KIAA0430 protein; struc 99.7 6.2E-18 2.1E-22 122.6 8.6 72 350-431 10-86 (96)
174 2lcw_A RNA-binding protein FUS 99.6 1.4E-19 4.8E-24 142.3 0.0 86 347-432 5-98 (116)
175 1wf1_A RNA-binding protein RAL 99.7 1.9E-17 6.6E-22 128.7 11.9 78 348-433 26-104 (110)
176 2kvi_A Nuclear polyadenylated 99.7 4.9E-18 1.7E-22 128.5 8.0 79 346-432 7-86 (96)
177 3lqv_A PRE-mRNA branch site pr 99.7 5.5E-18 1.9E-22 133.0 8.6 81 348-431 7-87 (115)
178 1iqt_A AUF1, heterogeneous nuc 99.7 1.1E-18 3.7E-23 125.8 4.1 75 351-426 1-75 (75)
179 3q2s_C Cleavage and polyadenyl 99.7 5.5E-18 1.9E-22 149.2 9.4 82 348-429 67-150 (229)
180 2xs2_A Deleted in azoospermia- 99.7 3.4E-18 1.2E-22 131.1 7.1 82 348-432 8-89 (102)
181 2cqh_A IGF-II mRNA-binding pro 99.7 7.9E-18 2.7E-22 126.7 8.6 79 348-433 7-87 (93)
182 2dnh_A Bruno-like 5, RNA bindi 99.7 3E-17 1E-21 126.6 12.1 92 8-100 9-100 (105)
183 2cq2_A Hypothetical protein LO 99.7 6.3E-18 2.2E-22 129.7 8.1 81 348-434 24-111 (114)
184 2dha_A FLJ20171 protein; RRM d 99.7 3E-18 1E-22 134.7 6.3 81 347-429 21-105 (123)
185 2i2y_A Fusion protein consists 99.7 3.7E-17 1.3E-21 134.7 13.2 121 53-184 10-148 (150)
186 3zzy_A Polypyrimidine tract-bi 99.7 3.9E-17 1.3E-21 128.3 12.6 82 348-434 27-111 (130)
187 2e44_A Insulin-like growth fac 99.7 1.3E-17 4.5E-22 126.3 9.6 80 348-431 14-94 (96)
188 1x5p_A Negative elongation fac 99.7 5.2E-17 1.8E-21 123.1 12.6 78 348-433 14-91 (97)
189 3lqv_A PRE-mRNA branch site pr 99.7 1.7E-17 5.9E-22 130.1 10.1 106 10-128 4-109 (115)
190 1whx_A Hypothetical protein ri 99.7 8.7E-18 3E-22 130.6 7.7 77 348-430 9-85 (111)
191 2hgm_A HNRPF protein, heteroge 99.7 4.7E-18 1.6E-22 133.8 6.0 79 348-429 41-121 (126)
192 1sjr_A Polypyrimidine tract-bi 99.7 4.4E-17 1.5E-21 132.9 11.4 80 348-431 45-126 (164)
193 2pe8_A Splicing factor 45; RRM 99.7 6.7E-17 2.3E-21 123.5 11.6 82 347-428 6-93 (105)
194 2e5g_A U6 snRNA-specific termi 99.7 4.8E-17 1.6E-21 122.5 10.6 80 348-433 7-86 (94)
195 2f3j_A RNA and export factor b 99.7 2.1E-17 7E-22 139.4 9.5 84 347-431 86-169 (177)
196 2cqc_A Arginine/serine-rich sp 99.7 4.5E-17 1.5E-21 123.1 10.5 89 4-95 5-93 (95)
197 2hgn_A Heterogeneous nuclear r 99.7 2.6E-18 9E-23 138.0 3.6 81 348-431 45-125 (139)
198 2dnz_A Probable RNA-binding pr 99.7 8.7E-17 3E-21 121.5 11.8 85 12-99 3-87 (95)
199 1p27_B RNA-binding protein 8A; 99.7 7.8E-17 2.7E-21 124.4 11.5 87 8-97 17-103 (106)
200 2e5i_A Heterogeneous nuclear r 99.7 2.1E-16 7.3E-21 123.7 14.0 76 350-431 26-104 (124)
201 2cq0_A Eukaryotic translation 99.7 3.6E-17 1.2E-21 125.6 9.4 91 6-99 7-97 (103)
202 1x5u_A Splicing factor 3B subu 99.7 7.3E-17 2.5E-21 124.3 11.1 91 6-99 7-97 (105)
203 3md1_A Nuclear and cytoplasmic 99.7 5.7E-17 2E-21 119.2 10.0 81 14-97 1-81 (83)
204 3egn_A RNA-binding protein 40; 99.7 7.1E-18 2.4E-22 137.8 5.6 84 347-431 43-132 (143)
205 2dgs_A DAZ-associated protein 99.7 1E-16 3.5E-21 122.1 11.7 87 9-99 5-91 (99)
206 3ns6_A Eukaryotic translation 99.7 1.9E-17 6.5E-22 126.1 7.5 85 12-98 4-94 (100)
207 2d9p_A Polyadenylate-binding p 99.7 7.7E-17 2.6E-21 123.7 10.8 92 4-100 5-96 (103)
208 1wg1_A KIAA1579 protein, homol 99.7 4.3E-17 1.5E-21 121.1 9.1 75 348-429 4-78 (88)
209 2jrs_A RNA-binding protein 39; 99.7 1E-16 3.5E-21 123.8 11.6 87 8-97 20-106 (108)
210 3p5t_L Cleavage and polyadenyl 99.7 2.6E-17 8.8E-22 122.9 7.9 81 15-98 2-84 (90)
211 3bs9_A Nucleolysin TIA-1 isofo 99.7 6.1E-17 2.1E-21 120.2 9.8 82 12-96 4-85 (87)
212 1whw_A Hypothetical protein ri 99.7 6.7E-17 2.3E-21 123.1 10.3 87 10-99 4-90 (99)
213 2cpz_A CUG triplet repeat RNA- 99.7 7.1E-17 2.4E-21 126.6 10.6 90 7-99 18-107 (115)
214 2cph_A RNA binding motif prote 99.7 1.3E-16 4.3E-21 123.5 11.5 91 6-99 7-99 (107)
215 3mdf_A Peptidyl-prolyl CIS-tra 99.7 6.8E-17 2.3E-21 119.3 9.5 81 11-94 4-84 (85)
216 2kxn_B Transformer-2 protein h 99.7 9.2E-17 3.2E-21 128.1 11.0 89 7-98 39-127 (129)
217 2x1f_A MRNA 3'-END-processing 99.7 8E-17 2.7E-21 121.9 10.0 83 13-98 1-83 (96)
218 2do4_A Squamous cell carcinoma 99.7 1E-16 3.5E-21 122.3 10.7 87 8-98 11-97 (100)
219 2dgo_A Cytotoxic granule-assoc 99.7 1E-16 3.4E-21 125.8 10.9 92 6-100 7-98 (115)
220 2la6_A RNA-binding protein FUS 99.7 1.7E-16 5.8E-21 120.8 11.7 84 8-94 7-98 (99)
221 1x4h_A RNA-binding protein 28; 99.7 1.1E-16 3.8E-21 124.7 10.9 92 5-99 6-103 (111)
222 3d2w_A TAR DNA-binding protein 99.7 7E-17 2.4E-21 119.9 9.1 77 347-432 9-87 (89)
223 1sjq_A Polypyrimidine tract-bi 99.7 7.6E-17 2.6E-21 121.9 9.3 83 9-99 11-94 (105)
224 2div_A TRNA selenocysteine ass 99.7 9.4E-17 3.2E-21 122.3 10.0 86 9-97 4-94 (99)
225 1x5s_A Cold-inducible RNA-bind 99.7 1.1E-16 3.8E-21 122.6 10.3 88 8-98 6-93 (102)
226 2dnm_A SRP46 splicing factor; 99.7 8.6E-17 2.9E-21 123.4 9.7 88 8-98 7-94 (103)
227 2dhg_A TRNA selenocysteine ass 99.7 1.8E-16 6E-21 122.0 11.1 88 9-99 4-92 (104)
228 2cqb_A Peptidyl-prolyl CIS-tra 99.7 6.5E-17 2.2E-21 123.9 8.4 90 7-99 5-94 (102)
229 1s79_A Lupus LA protein; RRM, 99.7 1.4E-16 4.7E-21 121.6 10.0 83 9-96 6-88 (103)
230 1x5t_A Splicing factor 3B subu 99.7 7E-17 2.4E-21 122.3 8.3 85 12-99 3-88 (96)
231 1oo0_B CG8781-PA, drosophila Y 99.7 1.4E-16 4.9E-21 123.8 10.1 88 8-98 20-107 (110)
232 2e5h_A Zinc finger CCHC-type a 99.7 1.4E-16 4.7E-21 120.1 9.6 84 8-94 10-93 (94)
233 1p1t_A Cleavage stimulation fa 99.7 7.5E-17 2.6E-21 124.1 8.3 88 9-99 3-90 (104)
234 2fy1_A RNA-binding motif prote 99.7 2.3E-16 7.8E-21 123.5 10.9 85 10-98 3-87 (116)
235 1x4e_A RNA binding motif, sing 99.7 7.5E-17 2.6E-21 119.1 7.4 81 11-94 2-82 (85)
236 3r27_A HnRNP L, heterogeneous 99.7 2.2E-16 7.5E-21 118.1 9.4 84 6-97 13-97 (100)
237 2cpf_A RNA binding motif prote 99.7 1.6E-16 5.3E-21 120.8 8.7 85 12-99 3-90 (98)
238 2cpe_A RNA-binding protein EWS 99.7 1.8E-16 6.2E-21 123.8 9.3 89 8-99 9-105 (113)
239 3s7r_A Heterogeneous nuclear r 99.7 2E-16 6.7E-21 117.4 9.0 84 7-94 4-87 (87)
240 2khc_A Testis-specific RNP-typ 99.7 1.5E-16 5E-21 125.5 8.7 85 7-94 33-117 (118)
241 2cqd_A RNA-binding region cont 99.7 2.4E-16 8.2E-21 123.8 9.8 88 6-97 9-96 (116)
242 2cq1_A PTB-like protein L; RRM 99.7 2.7E-16 9.2E-21 119.1 9.6 89 3-99 4-93 (101)
243 2ad9_A Polypyrimidine tract-bi 99.7 2.6E-16 8.8E-21 122.2 9.5 86 6-99 23-109 (119)
244 2ywk_A Putative RNA-binding pr 99.7 3E-16 1E-20 118.5 9.7 84 8-95 10-93 (95)
245 1wi8_A EIF-4B, eukaryotic tran 99.7 3E-16 1E-20 120.6 9.8 89 6-99 7-96 (104)
246 1wex_A Hypothetical protein (r 99.7 5.2E-16 1.8E-20 118.3 10.8 88 3-98 4-92 (104)
247 3n9u_C Cleavage and polyadenyl 99.7 2.4E-16 8.1E-21 129.9 9.6 83 13-98 54-138 (156)
248 2dng_A Eukaryotic translation 99.7 3.4E-16 1.2E-20 120.1 9.9 88 7-99 8-95 (103)
249 2bz2_A Negative elongation fac 99.7 2.2E-16 7.6E-21 124.3 8.9 79 347-433 37-115 (121)
250 3beg_B Splicing factor, argini 99.7 1.1E-16 3.9E-21 125.1 7.1 76 348-430 15-95 (115)
251 2dnl_A Cytoplasmic polyadenyla 99.7 1.5E-16 5.1E-21 124.3 7.7 77 348-427 7-86 (114)
252 2hvz_A Splicing factor, argini 99.7 2.1E-16 7.1E-21 120.8 8.4 89 15-111 1-100 (101)
253 1x5o_A RNA binding motif, sing 99.7 6.8E-16 2.3E-20 120.8 11.5 88 8-96 19-111 (114)
254 4a8x_A RNA-binding protein wit 99.7 2.3E-16 7.7E-21 117.4 8.2 83 12-97 2-85 (88)
255 2cq3_A RNA-binding protein 9; 99.7 7.9E-16 2.7E-20 118.0 11.5 90 5-99 6-95 (103)
256 1u6f_A Tcubp1, RNA-binding pro 99.7 3.6E-16 1.2E-20 127.0 10.1 90 8-100 36-125 (139)
257 2rs2_A Musashi-1, RNA-binding 99.7 2.4E-16 8.1E-21 122.0 8.5 87 8-98 19-105 (109)
258 3ucg_A Polyadenylate-binding p 99.7 2.2E-16 7.6E-21 117.7 8.0 82 12-97 4-85 (89)
259 2m2b_A RNA-binding protein 10; 99.7 1.3E-16 4.5E-21 128.0 7.2 88 8-99 17-110 (131)
260 2cqi_A Nucleolysin TIAR; RNA r 99.7 6.3E-16 2.2E-20 118.6 10.7 88 7-99 8-95 (103)
261 2wbr_A GW182, gawky, LD47780P; 99.7 2.8E-16 9.4E-21 113.0 7.9 75 12-95 5-79 (89)
262 3ulh_A THO complex subunit 4; 99.7 5.2E-16 1.8E-20 120.0 10.2 84 8-95 23-106 (107)
263 3ex7_B RNA-binding protein 8A; 99.7 6.3E-16 2.2E-20 123.3 10.8 89 8-99 16-104 (126)
264 2dgv_A HnRNP M, heterogeneous 99.7 9.2E-16 3.1E-20 115.1 11.1 84 10-98 4-87 (92)
265 2mss_A Protein (musashi1); RNA 99.6 2.8E-16 9.7E-21 112.9 7.9 75 16-94 1-75 (75)
266 1uaw_A Mouse-musashi-1; RNP-ty 99.6 2.1E-16 7.3E-21 114.2 7.0 76 15-94 1-76 (77)
267 2cq4_A RNA binding motif prote 99.6 1.3E-16 4.4E-21 124.9 6.2 87 9-99 20-106 (114)
268 2dh8_A DAZ-associated protein 99.6 2.9E-16 1E-20 120.9 8.1 89 7-99 9-97 (105)
269 2dgx_A KIAA0430 protein; RRM d 99.6 7.3E-16 2.5E-20 116.4 9.4 84 9-98 4-91 (96)
270 2ek1_A RNA-binding protein 12; 99.6 2.3E-16 7.9E-21 119.1 6.7 83 10-95 11-93 (95)
271 2do0_A HnRNP M, heterogeneous 99.6 1.1E-15 3.9E-20 119.5 10.7 86 8-97 9-94 (114)
272 2j76_E EIF-4B, EIF4B, eukaryot 99.6 2.9E-16 1E-20 119.6 7.0 85 8-97 13-98 (100)
273 1wf0_A TDP-43, TAR DNA-binding 99.6 2E-16 6.7E-21 117.6 5.9 79 348-433 4-82 (88)
274 2dis_A Unnamed protein product 99.6 8.2E-16 2.8E-20 119.3 9.6 87 11-99 5-94 (109)
275 3ue2_A Poly(U)-binding-splicin 99.6 9.5E-16 3.3E-20 119.3 9.9 81 348-428 19-108 (118)
276 2cpy_A RNA-binding protein 12; 99.6 3.1E-16 1.1E-20 122.5 6.9 86 8-98 9-95 (114)
277 2cqp_A RNA-binding protein 12; 99.6 3.8E-16 1.3E-20 118.6 7.2 84 10-96 11-94 (98)
278 2dit_A HIV TAT specific factor 99.6 2.5E-15 8.4E-20 116.9 12.0 83 346-432 12-105 (112)
279 1wg5_A Heterogeneous nuclear r 99.6 1.1E-15 3.9E-20 117.2 9.9 85 8-97 9-94 (104)
280 2kt5_A RNA and export factor-b 99.6 1.6E-15 5.5E-20 120.5 11.1 84 10-97 31-114 (124)
281 2err_A Ataxin-2-binding protei 99.6 6.8E-16 2.3E-20 119.5 8.6 87 6-97 21-107 (109)
282 3v4m_A Splicing factor U2AF 65 99.6 8.1E-16 2.8E-20 117.6 8.9 82 347-428 3-96 (105)
283 2voo_A Lupus LA protein; RNA-b 99.6 1.6E-15 5.5E-20 129.8 11.8 81 348-430 108-188 (193)
284 1x4b_A Heterogeneous nuclear r 99.6 4.3E-16 1.5E-20 122.3 7.4 88 8-99 21-108 (116)
285 1h2v_Z 20 kDa nuclear CAP bind 99.6 1.2E-15 4.1E-20 126.5 10.5 87 9-98 34-120 (156)
286 2cqg_A TDP-43, TAR DNA-binding 99.6 1.8E-15 6.1E-20 116.0 10.6 88 7-99 8-95 (103)
287 2hzc_A Splicing factor U2AF 65 99.6 7.8E-16 2.7E-20 114.1 8.3 71 348-425 5-86 (87)
288 2ki2_A SS-DNA binding protein 99.6 3.1E-16 1E-20 117.1 5.8 80 15-98 2-81 (90)
289 2hgl_A HNRPF protein, heteroge 99.6 4.8E-16 1.6E-20 124.4 7.2 83 10-97 40-125 (136)
290 1x4a_A Splicing factor, argini 99.6 2.6E-15 9E-20 116.4 11.2 85 8-98 16-100 (109)
291 1wez_A HnRNP H', FTP-3, hetero 99.6 7.3E-16 2.5E-20 117.5 7.8 82 9-96 10-91 (102)
292 2krb_A Eukaryotic translation 99.6 8.6E-16 2.9E-20 112.1 7.8 66 14-81 1-72 (81)
293 2dgw_A Probable RNA-binding pr 99.6 1.3E-15 4.6E-20 113.9 9.0 83 9-97 5-87 (91)
294 2lea_A Serine/arginine-rich sp 99.6 5.9E-16 2E-20 124.5 7.3 121 58-184 6-127 (135)
295 2cpi_A CCR4-NOT transcription 99.6 8.8E-16 3E-20 119.3 7.9 88 8-98 9-102 (111)
296 2lmi_A GRSF-1, G-rich sequence 99.6 6.4E-16 2.2E-20 119.2 7.0 85 8-97 5-92 (107)
297 2jwn_A Embryonic polyadenylate 99.6 5.4E-16 1.8E-20 123.3 6.5 84 10-97 32-115 (124)
298 2db1_A Heterogeneous nuclear r 99.6 7E-16 2.4E-20 121.1 6.9 84 9-97 12-98 (118)
299 2a3j_A U1 small nuclear ribonu 99.6 3.1E-15 1E-19 118.3 10.4 84 9-98 24-111 (127)
300 1x4d_A Matrin 3; structural ge 99.6 1E-15 3.5E-20 115.7 7.2 81 9-97 10-92 (102)
301 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 2E-15 6.8E-20 122.8 9.5 84 8-94 57-140 (140)
302 2dnq_A RNA-binding protein 4B; 99.6 6.2E-15 2.1E-19 109.9 11.3 79 10-99 4-82 (90)
303 1wel_A RNA-binding protein 12; 99.6 5.8E-16 2E-20 123.0 5.9 84 10-97 21-104 (124)
304 2nlw_A Eukaryotic translation 99.6 1.5E-15 5.2E-20 116.7 8.0 83 9-96 10-99 (105)
305 1iqt_A AUF1, heterogeneous nuc 99.6 9.9E-16 3.4E-20 110.1 6.2 74 16-93 1-74 (75)
306 3u1l_A PRE-mRNA-splicing facto 99.6 1.5E-15 5E-20 132.7 8.2 79 347-431 132-231 (240)
307 1fj7_A Nucleolin RBD1, protein 99.6 5.4E-16 1.9E-20 118.5 4.6 86 9-99 12-97 (101)
308 1why_A Hypothetical protein ri 99.6 7.7E-15 2.6E-19 111.1 10.9 84 8-98 11-94 (97)
309 1x4f_A Matrin 3; structural ge 99.6 3E-15 1E-19 114.8 8.6 82 8-97 19-102 (112)
310 2fc8_A NCL protein; structure 99.6 4E-15 1.4E-19 113.9 9.1 88 6-99 7-94 (102)
311 1rk8_A CG8781-PA, CG8781-PA pr 99.6 4.6E-15 1.6E-19 124.0 10.2 86 10-98 68-153 (165)
312 2la4_A Nuclear and cytoplasmic 99.6 5.2E-15 1.8E-19 113.0 9.6 80 8-96 21-100 (101)
313 3q2s_C Cleavage and polyadenyl 99.6 2.5E-15 8.5E-20 132.2 8.8 82 13-97 67-150 (229)
314 2dnn_A RNA-binding protein 12; 99.6 2.5E-15 8.7E-20 115.5 7.7 79 12-96 14-92 (109)
315 2fc9_A NCL protein; structure 99.6 3.6E-15 1.2E-19 113.9 8.5 85 7-98 8-92 (101)
316 2e5j_A Methenyltetrahydrofolat 99.6 8.5E-15 2.9E-19 110.8 10.4 81 9-97 14-94 (97)
317 2hgm_A HNRPF protein, heteroge 99.6 2.9E-15 9.8E-20 117.9 7.8 83 9-97 37-121 (126)
318 2cpx_A Hypothetical protein FL 99.6 1.4E-15 4.7E-20 119.3 5.9 88 9-99 20-107 (115)
319 2dha_A FLJ20171 protein; RRM d 99.6 1.9E-15 6.4E-20 118.7 6.6 81 11-96 20-104 (123)
320 2jvo_A Nucleolar protein 3; nu 99.6 6.4E-15 2.2E-19 113.6 9.4 81 7-98 24-104 (108)
321 1x4c_A Splicing factor, argini 99.6 7.6E-15 2.6E-19 113.4 9.6 83 9-98 10-94 (108)
322 2cpj_A Non-POU domain-containi 99.6 1.1E-14 3.7E-19 110.7 9.8 84 5-97 6-89 (99)
323 2jvr_A Nucleolar protein 3; RN 99.6 4.1E-15 1.4E-19 114.5 7.4 82 8-96 22-104 (111)
324 1x4g_A Nucleolysin TIAR; struc 99.6 9.7E-15 3.3E-19 113.1 9.6 82 9-99 20-101 (109)
325 2lcw_A RNA-binding protein FUS 99.3 2.1E-16 7.1E-21 124.1 0.0 88 9-99 2-97 (116)
326 1jmt_A Splicing factor U2AF 35 99.6 1.3E-15 4.5E-20 116.2 4.3 72 354-426 20-103 (104)
327 2cpd_A Apobec-1 stimulating pr 99.6 1.7E-14 5.8E-19 109.6 10.3 85 3-98 4-90 (99)
328 2kvi_A Nuclear polyadenylated 99.6 1.3E-14 4.5E-19 109.5 9.5 78 9-97 5-83 (96)
329 2dnp_A RNA-binding protein 14; 99.6 1.3E-14 4.5E-19 108.1 9.1 80 8-98 3-82 (90)
330 1nu4_A U1A RNA binding domain; 99.6 3.8E-15 1.3E-19 112.8 6.1 83 10-98 4-90 (97)
331 2f3j_A RNA and export factor b 99.6 1.8E-14 6.1E-19 121.4 10.7 85 10-98 84-168 (177)
332 2hgn_A Heterogeneous nuclear r 99.6 2.9E-15 9.8E-20 120.3 5.4 81 10-96 42-122 (139)
333 2dgt_A RNA-binding protein 30; 99.6 1.7E-14 5.9E-19 108.0 9.3 80 8-98 4-83 (92)
334 2xnq_A Nuclear polyadenylated 99.5 2.3E-14 7.8E-19 108.3 10.0 78 8-96 16-94 (97)
335 2cq2_A Hypothetical protein LO 99.5 4.9E-15 1.7E-19 113.6 6.2 82 8-95 19-104 (114)
336 2e44_A Insulin-like growth fac 99.5 2.2E-14 7.5E-19 108.4 9.5 82 9-97 10-92 (96)
337 2ytc_A PRE-mRNA-splicing facto 99.5 2.5E-14 8.6E-19 105.4 9.4 79 7-94 5-84 (85)
338 2xs2_A Deleted in azoospermia- 99.5 4.2E-15 1.4E-19 113.7 5.3 82 9-96 4-85 (102)
339 1whx_A Hypothetical protein ri 99.5 1.7E-14 5.9E-19 111.8 8.8 78 10-96 6-83 (111)
340 1fjc_A Nucleolin RBD2, protein 99.5 5.6E-15 1.9E-19 111.7 5.9 84 7-98 9-92 (96)
341 3pgw_S U1-70K; protein-RNA com 99.5 2.5E-15 8.7E-20 144.6 4.9 80 102-184 102-182 (437)
342 2dgu_A Heterogeneous nuclear r 99.5 2.3E-14 8E-19 109.7 9.0 79 10-99 7-85 (103)
343 2dnl_A Cytoplasmic polyadenyla 99.5 6.6E-15 2.2E-19 114.9 5.9 67 10-77 4-73 (114)
344 2d9o_A DNAJ (HSP40) homolog, s 99.5 8.3E-14 2.8E-18 104.8 11.2 78 349-433 10-94 (100)
345 1sjr_A Polypyrimidine tract-bi 99.5 4.4E-14 1.5E-18 115.2 10.4 81 12-97 44-124 (164)
346 1wf1_A RNA-binding protein RAL 99.5 3E-14 1E-18 110.5 9.1 76 10-96 23-99 (110)
347 3d2w_A TAR DNA-binding protein 99.5 1.9E-14 6.5E-19 106.7 7.5 81 9-99 6-86 (89)
348 2j8a_A Histone-lysine N-methyl 99.5 1.3E-14 4.5E-19 111.4 6.7 78 15-95 3-94 (136)
349 2e5g_A U6 snRNA-specific termi 99.5 3.8E-14 1.3E-18 106.5 9.2 79 10-97 4-82 (94)
350 2cqh_A IGF-II mRNA-binding pro 99.5 1.8E-14 6.1E-19 108.1 7.2 80 10-99 4-85 (93)
351 2diu_A KIAA0430 protein; struc 99.5 1E-13 3.5E-18 100.5 10.0 74 13-99 7-86 (96)
352 2e5i_A Heterogeneous nuclear r 99.5 1.3E-13 4.4E-18 107.9 11.3 76 15-97 26-102 (124)
353 3beg_B Splicing factor, argini 99.5 5.4E-14 1.8E-18 109.8 8.7 63 12-81 14-76 (115)
354 1wg1_A KIAA1579 protein, homol 99.5 3.8E-14 1.3E-18 105.1 7.3 75 12-96 3-77 (88)
355 3zzy_A Polypyrimidine tract-bi 99.5 7.1E-14 2.4E-18 109.7 9.1 80 12-97 26-106 (130)
356 3egn_A RNA-binding protein 40; 99.5 1E-14 3.5E-19 119.0 4.3 87 9-98 40-131 (143)
357 1x5p_A Negative elongation fac 99.5 1.5E-13 5.1E-18 103.9 10.4 84 5-99 6-89 (97)
358 2pe8_A Splicing factor 45; RRM 99.5 2.5E-13 8.5E-18 103.6 10.1 84 10-96 4-93 (105)
359 2hzc_A Splicing factor U2AF 65 99.5 1.7E-13 5.7E-18 101.4 8.2 72 11-92 3-85 (87)
360 3s6e_A RNA-binding protein 39; 99.5 2.2E-13 7.4E-18 105.2 8.8 77 348-428 6-92 (114)
361 2voo_A Lupus LA protein; RNA-b 99.4 1.3E-13 4.4E-18 118.0 7.0 80 12-96 107-186 (193)
362 2bz2_A Negative elongation fac 99.4 5E-13 1.7E-17 105.1 9.7 80 8-98 33-112 (121)
363 1wf0_A TDP-43, TAR DNA-binding 99.4 2.3E-13 7.8E-18 100.9 6.0 78 12-99 3-80 (88)
364 3tht_A Alkylated DNA repair pr 99.4 6.2E-13 2.1E-17 122.5 8.8 75 347-427 16-97 (345)
365 2dnr_A Synaptojanin-1; RRM dom 99.4 2.4E-12 8.2E-17 92.5 8.6 75 346-429 4-86 (91)
366 3u1l_A PRE-mRNA-splicing facto 99.3 2.7E-12 9.3E-17 112.0 9.1 82 11-98 131-230 (240)
367 2dit_A HIV TAT specific factor 99.3 6.3E-12 2.1E-16 97.5 9.6 85 6-97 7-102 (112)
368 3v4m_A Splicing factor U2AF 65 99.3 4.1E-12 1.4E-16 96.9 7.9 83 12-97 3-97 (105)
369 3tht_A Alkylated DNA repair pr 99.3 9.5E-12 3.2E-16 114.6 9.3 82 8-95 12-97 (345)
370 3ue2_A Poly(U)-binding-splicin 99.3 1.2E-11 4E-16 96.1 7.6 82 12-96 18-108 (118)
371 1jmt_A Splicing factor U2AF 35 99.2 5.1E-12 1.7E-16 96.2 3.9 72 19-94 20-103 (104)
372 1owx_A Lupus LA protein, SS-B, 99.2 4.4E-11 1.5E-15 92.1 9.0 75 346-426 15-93 (121)
373 2d9o_A DNAJ (HSP40) homolog, s 99.2 2.1E-10 7.1E-15 86.1 11.0 77 12-98 8-91 (100)
374 1ufw_A Synaptojanin 2; RNP dom 99.2 2.1E-11 7.3E-16 87.9 4.9 74 345-427 11-93 (95)
375 3dxb_A Thioredoxin N-terminall 99.1 3.9E-10 1.3E-14 99.0 10.4 78 350-427 125-211 (222)
376 3s6e_A RNA-binding protein 39; 99.1 5.6E-10 1.9E-14 86.0 8.6 80 10-96 3-92 (114)
377 1owx_A Lupus LA protein, SS-B, 99.0 3.4E-09 1.2E-13 81.6 9.6 82 7-96 11-95 (121)
378 2l9w_A U4/U6 snRNA-associated- 98.7 6E-08 2.1E-12 71.2 8.4 71 348-424 20-95 (117)
379 2dnr_A Synaptojanin-1; RRM dom 98.6 8.8E-08 3E-12 68.8 6.8 75 11-97 4-86 (91)
380 3dxb_A Thioredoxin N-terminall 98.5 3.1E-07 1.1E-11 80.2 8.0 82 12-96 122-212 (222)
381 1ufw_A Synaptojanin 2; RNP dom 98.4 3.5E-07 1.2E-11 66.0 6.0 73 10-94 11-92 (95)
382 1wey_A Calcipressin 1; structu 98.3 1.4E-06 4.6E-11 64.1 6.9 79 348-432 4-87 (104)
383 2l9w_A U4/U6 snRNA-associated- 97.9 4.1E-05 1.4E-09 56.3 7.3 70 102-179 21-95 (117)
384 1uw4_A UPF3X; nonsense mediate 97.8 0.00011 3.9E-09 53.0 8.5 72 15-86 2-75 (91)
385 1whv_A Poly(A)-specific ribonu 97.8 0.00011 3.8E-09 52.9 8.1 59 10-77 12-70 (100)
386 2dhx_A Poly (ADP-ribose) polym 97.7 0.0003 1E-08 51.4 9.5 74 348-430 7-85 (104)
387 2dhx_A Poly (ADP-ribose) polym 97.7 0.00033 1.1E-08 51.1 9.6 89 12-115 6-99 (104)
388 1uw4_A UPF3X; nonsense mediate 97.4 0.00081 2.8E-08 48.5 8.4 78 350-427 2-86 (91)
389 1whv_A Poly(A)-specific ribonu 97.4 0.00074 2.5E-08 48.7 8.0 55 348-411 15-69 (100)
390 3ctr_A Poly(A)-specific ribonu 97.4 0.00017 5.9E-09 52.1 4.7 53 16-77 8-60 (101)
391 1wwh_A Nucleoporin 35, nucleop 97.3 0.00079 2.7E-08 50.9 7.6 70 348-425 23-93 (119)
392 2l08_A Regulator of nonsense t 97.0 0.00073 2.5E-08 49.1 4.7 75 13-87 8-84 (97)
393 3ctr_A Poly(A)-specific ribonu 97.0 0.0011 3.6E-08 48.0 5.1 54 350-412 7-60 (101)
394 1wey_A Calcipressin 1; structu 96.5 0.0037 1.3E-07 45.9 5.1 73 14-95 5-82 (104)
395 2l08_A Regulator of nonsense t 96.3 0.0038 1.3E-07 45.3 4.3 77 103-182 10-94 (97)
396 1wwh_A Nucleoporin 35, nucleop 96.3 0.019 6.4E-07 43.4 8.2 74 10-93 20-93 (119)
397 3p3d_A Nucleoporin 53; structu 96.0 0.017 5.8E-07 44.3 6.4 76 349-426 7-96 (132)
398 3pq1_A Poly(A) RNA polymerase; 96.0 0.0038 1.3E-07 59.5 3.5 56 349-410 53-108 (464)
399 3pq1_A Poly(A) RNA polymerase; 95.7 0.0026 8.9E-08 60.6 1.2 61 9-75 48-108 (464)
400 3p3d_A Nucleoporin 53; structu 94.0 0.096 3.3E-06 40.1 5.5 76 102-182 7-97 (132)
401 3d45_A Poly(A)-specific ribonu 90.9 0.79 2.7E-05 44.5 8.9 57 13-78 439-495 (507)
402 3d45_A Poly(A)-specific ribonu 88.2 1.2 4E-05 43.3 7.7 55 349-412 440-494 (507)
403 4e8u_A Putative uncharacterize 73.2 11 0.00036 30.4 6.8 54 350-406 13-77 (172)
404 4eyt_A Telomerase associated p 67.2 29 0.00098 24.1 8.2 59 10-76 8-66 (129)
405 4eyt_A Telomerase associated p 59.2 42 0.0014 23.3 7.9 56 348-411 11-66 (129)
406 2g0c_A ATP-dependent RNA helic 56.3 19 0.00066 24.2 4.8 68 351-427 2-75 (76)
407 4e8u_A Putative uncharacterize 47.4 31 0.0011 27.6 5.2 51 16-69 14-75 (172)
408 3lpe_A Putative transcription 22.8 1.6E+02 0.0055 20.6 5.1 34 128-165 39-72 (92)
409 2i9x_A Putative septation prot 20.2 1.5E+02 0.0053 20.6 4.4 50 375-431 5-56 (87)
No 1
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=8.4e-45 Score=336.29 Aligned_cols=255 Identities=19% Similarity=0.314 Sum_probs=209.2
Q ss_pred ccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCC
Q 013840 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (435)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~ 87 (435)
...+.+.++|||+|||+++|+++|+++|+.||+|.+|+++.++.+ ++|||||+|.+.++|.+|++ +++.. +.| +
T Consensus 35 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~-~~~~~-~~g--~ 108 (292)
T 2ghp_A 35 LTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAIT-KTHKV-VGQ--N 108 (292)
T ss_dssp -------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHT-TTTCE-ETT--E
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHH-hCCcE-eCC--c
Confidence 445677899999999999999999999999999999999998743 57999999999999999995 77765 444 7
Q ss_pred ceeeeccCchhccccceEEEecCCCCCCHHHHHHhhhccC-CeeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHHcCC
Q 013840 88 PLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYG-TIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 166 (435)
Q Consensus 88 ~i~~~~~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~g-~i~~v~~~~~~~~~~~g~afV~f~~~e~a~~a~~~l~~~ 166 (435)
.+.+.++. .++|||+|||..+++++|+++|+.|| .|..|.+..+..+.++|+|||+|.+.++|.+|++.|+|.
T Consensus 109 ~i~v~~~~------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 182 (292)
T 2ghp_A 109 EIIVSHLT------ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGL 182 (292)
T ss_dssp ECEEEECC------SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTC
T ss_pred EEEEEECC------CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 88887764 57899999999999999999999999 999999998888889999999999999999999999997
Q ss_pred CcCCCCcceEEEEecCCHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCCCCCCCCCCCCCccCCCCcCccccCCCCCC
Q 013840 167 HKMEGSSVPLVVKWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQ 246 (435)
Q Consensus 167 ~~~~g~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (435)
. +.|+. |.|.++.+.......
T Consensus 183 ~-~~g~~--l~v~~a~~~~~~~~~-------------------------------------------------------- 203 (292)
T 2ghp_A 183 K-IEGYT--LVTKVSNPLEKSKRT-------------------------------------------------------- 203 (292)
T ss_dssp E-ETTEE--CEEEECCCC--------------------------------------------------------------
T ss_pred E-eCCcE--EEEEECCCCcccccc--------------------------------------------------------
Confidence 6 67765 777777654211100
Q ss_pred CCCCccCcCCCCCCCCCCcCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccC
Q 013840 247 NQPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVA 326 (435)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (435)
T Consensus 204 -------------------------------------------------------------------------------- 203 (292)
T 2ghp_A 204 -------------------------------------------------------------------------------- 203 (292)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCCcccCCCCceEEEeCCCCC-CCHHHHHHHhhcCCcEEEEEEEeeCC-CCCcceEEEEEeCCHHHH
Q 013840 327 NSNPSTSSSGGTGSGGQIEGPPGANLFIYHIPQE-FGDQELGNAFQAFGRVLSAKVFVDKA-TGVSKCFGFVSYESPASA 404 (435)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~v~V~nLp~~-~t~~~L~~~F~~fG~v~~v~i~~~~~-~g~~~g~afV~F~~~~~A 404 (435)
.......++|||+|||.. +|+++|+++|+.||.|.+|.|+.+.. +|.++|||||+|.+.++|
T Consensus 204 ----------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A 267 (292)
T 2ghp_A 204 ----------------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSA 267 (292)
T ss_dssp -------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHH
T ss_pred ----------------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHH
Confidence 001115589999999999 99999999999999999999998864 499999999999999999
Q ss_pred HHHHHhcCCceeCCeEEEEEEccCCc
Q 013840 405 QNAIAMMNGCQLGGKKLKVQLKRDNK 430 (435)
Q Consensus 405 ~~A~~~l~g~~l~gr~i~v~~a~~~~ 430 (435)
.+|+ .|||..|+|++|+|+|++.|+
T Consensus 268 ~~A~-~l~g~~~~g~~i~V~~a~~k~ 292 (292)
T 2ghp_A 268 ERAL-QMNRSLLGNREISVSLADKKP 292 (292)
T ss_dssp HHHG-GGTTEEETTEEEEEEECCCCC
T ss_pred HHHH-HhcCCEECCcEEEEEEecCCC
Confidence 9999 999999999999999999873
No 2
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=3.9e-44 Score=330.46 Aligned_cols=248 Identities=21% Similarity=0.364 Sum_probs=218.0
Q ss_pred cCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCc
Q 013840 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (435)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~ 88 (435)
+...++++|||+|||+++|+++|+++|+.|| |.++++ ++++|||||+|.+.++|.+|++.|++.. +.| +.
T Consensus 17 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~-~~g--~~ 86 (284)
T 3smz_A 17 RQFRNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSR-LRE--RE 86 (284)
T ss_dssp HHHHCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCE-ETT--EE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCe-eCC--eE
Confidence 4456789999999999999999999999999 888887 4567899999999999999999999986 444 78
Q ss_pred eeeeccCchhccccceEEEecCCCCCCHHHHHHhhhccCCeeEEEEecCC-CCCcccEEEEEeCCHHHHHHHHHHHcCCC
Q 013840 89 LQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKH 167 (435)
Q Consensus 89 i~~~~~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~-~~~~~g~afV~f~~~e~a~~a~~~l~~~~ 167 (435)
+.+.++. ...+|+|+|||.++++++|+++|+.||.|..+.+..+. +|.++|+|||+|.+.++|.+|++.+++..
T Consensus 87 i~v~~~~-----~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~ 161 (284)
T 3smz_A 87 LSVQLQP-----TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKP 161 (284)
T ss_dssp CEEEECC-----CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred EEEEecC-----CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCE
Confidence 8887754 34689999999999999999999999999999998775 78899999999999999999999999976
Q ss_pred cCCCCcceEEEEecCCHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCCCCCCCCCCCCCccCCCCcCccccCCCCCCC
Q 013840 168 KMEGSSVPLVVKWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQN 247 (435)
Q Consensus 168 ~~~g~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (435)
++|+. |.|.++......
T Consensus 162 -~~g~~--i~v~~a~~~~~~------------------------------------------------------------ 178 (284)
T 3smz_A 162 -LGPRT--LYVHWTDAGQLT------------------------------------------------------------ 178 (284)
T ss_dssp -ETTEE--CEEEECCGGGCC------------------------------------------------------------
T ss_pred -eCCcE--EEEEECCCCCCC------------------------------------------------------------
Confidence 77775 777777553100
Q ss_pred CCCccCcCCCCCCCCCCcCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCC
Q 013840 248 QPGFHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVAN 327 (435)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (435)
T Consensus 179 -------------------------------------------------------------------------------- 178 (284)
T 3smz_A 179 -------------------------------------------------------------------------------- 178 (284)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCCCCcccCCCCceEEEeCCCCCC-CHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHH
Q 013840 328 SNPSTSSSGGTGSGGQIEGPPGANLFIYHIPQEF-GDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQN 406 (435)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~v~V~nLp~~~-t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~ 406 (435)
......++|||+|||..+ |+++|+++|+.||.|.+|.|+.+. +|.++|+|||+|.+.++|.+
T Consensus 179 ----------------~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~ 241 (284)
T 3smz_A 179 ----------------PALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEE 241 (284)
T ss_dssp ----------------TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHH
T ss_pred ----------------cccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHH
Confidence 001145799999999996 999999999999999999999986 89999999999999999999
Q ss_pred HHHhcCCceeCCeEEEEEEccCCcC
Q 013840 407 AIAMMNGCQLGGKKLKVQLKRDNKQ 431 (435)
Q Consensus 407 A~~~l~g~~l~gr~i~v~~a~~~~~ 431 (435)
|++.|||..++|++|+|+|++.+..
T Consensus 242 A~~~l~g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 242 AQQQADGLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp HHHHHTTCEETTEECEEEECCSSSC
T ss_pred HHHHhCCCccCCeEEEEEEecCCCc
Confidence 9999999999999999999988764
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=1.1e-32 Score=242.26 Aligned_cols=167 Identities=29% Similarity=0.493 Sum_probs=147.9
Q ss_pred cceEEEecCCCCCCHHHHHHhhhccCCeeEEEEecCC-CCCcccEEEEEeCCHHHHHHHHHHHcCCCcCCCCcceEEEEe
Q 013840 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (435)
Q Consensus 102 ~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~-~~~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~ 180 (435)
.++|||+|||+++++++|+++|+.||+|.+|.++++. +++++|||||+|.+.++|.+|++.+++.. +.|+. +.+.+
T Consensus 15 ~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~-~~g~~--i~~~~ 91 (213)
T 4f02_A 15 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDV-IKGKP--VRIMW 91 (213)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCE-ETTEE--CEEEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhh-cCCcc--ccccc
Confidence 4689999999999999999999999999999999875 78899999999999999999999999975 77765 56666
Q ss_pred cCCHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCCCCCCCCCCCCCccCCCCcCccccCCCCCCCCCCccCcCCCCCC
Q 013840 181 ADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQ 260 (435)
Q Consensus 181 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (435)
+.........
T Consensus 92 ~~~~~~~~~~---------------------------------------------------------------------- 101 (213)
T 4f02_A 92 SQRDPSLRKS---------------------------------------------------------------------- 101 (213)
T ss_dssp CCCCTHHHHH----------------------------------------------------------------------
T ss_pred cccccccccc----------------------------------------------------------------------
Confidence 6543322111
Q ss_pred CCCCcCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCC
Q 013840 261 GNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGS 340 (435)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (435)
T Consensus 102 -------------------------------------------------------------------------------- 101 (213)
T 4f02_A 102 -------------------------------------------------------------------------------- 101 (213)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccCCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeE
Q 013840 341 GGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKK 420 (435)
Q Consensus 341 ~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~ 420 (435)
...+|||+|||..+|+++|+++|+.||.|.+|.|+++. +.++|||||+|.+.++|.+|++.|||..|+|++
T Consensus 102 -------~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~ 172 (213)
T 4f02_A 102 -------GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRK 172 (213)
T ss_dssp -------CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred -------ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEE
Confidence 33689999999999999999999999999999999984 568999999999999999999999999999999
Q ss_pred EEEEEccCCc
Q 013840 421 LKVQLKRDNK 430 (435)
Q Consensus 421 i~v~~a~~~~ 430 (435)
|+|.+|+.+.
T Consensus 173 i~V~~a~~~~ 182 (213)
T 4f02_A 173 VFVGRFKSRK 182 (213)
T ss_dssp CEEEECCCHH
T ss_pred EEEEEcCCCc
Confidence 9999998764
No 4
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=2.9e-32 Score=232.41 Aligned_cols=170 Identities=42% Similarity=0.790 Sum_probs=155.1
Q ss_pred CCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCC--CccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCcee
Q 013840 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTR--ASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (435)
Q Consensus 13 ~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~--~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~ 90 (435)
++++|||+|||+++|+++|+++|+.||+|.+++++.++.++ +++|||||+|.+.++|++|++.|++..+..+..+.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 57899999999999999999999999999999999998876 8999999999999999999999999888888788888
Q ss_pred eeccCchhcc--ccceEEEecCCCCCCHHHHHHhhhccCCeeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHHcCCCc
Q 013840 91 VKYADGELER--LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHK 168 (435)
Q Consensus 91 ~~~~~~~~~~--~~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~~~~~~g~afV~f~~~e~a~~a~~~l~~~~~ 168 (435)
+.++...... ..++|+|+|||.++++++|+++|+.||.|..+.+..+.+|.++|+|||+|.+.++|.+|++.|||..+
T Consensus 82 ~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 161 (175)
T 3nmr_A 82 MKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQT 161 (175)
T ss_dssp EEECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCC
T ss_pred EccccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcc
Confidence 8887654433 46899999999999999999999999999999999998899999999999999999999999999887
Q ss_pred CCCCcceEEEEecC
Q 013840 169 MEGSSVPLVVKWAD 182 (435)
Q Consensus 169 ~~g~~~~l~v~~a~ 182 (435)
..|+..+|.|.|+.
T Consensus 162 ~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 162 MEGCSSPMVVKFAD 175 (175)
T ss_dssp CTTCSSCCEEEECC
T ss_pred cCCCCCCeEEEecC
Confidence 77756678988873
No 5
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-32 Score=229.41 Aligned_cols=165 Identities=31% Similarity=0.538 Sum_probs=147.7
Q ss_pred ceEEEecCCCCCCHHHHHHhhhccCCeeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHHcCCCcCCCCcceEEEEecC
Q 013840 103 HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWAD 182 (435)
Q Consensus 103 ~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~~~~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~a~ 182 (435)
++|||+|||.++++++|+++|+.||+|.+|.+..++.+.++|+|||+|.+.++|.+|++.+++.. +.|+. +.+.++.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~-~~g~~--i~v~~~~ 77 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQ-IENNI--VKINWAF 77 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCE-ETTEE--CEEEECC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCc-cCCCe--eEEEEcC
Confidence 57999999999999999999999999999999999888899999999999999999999999976 67765 6666654
Q ss_pred CHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCCCCCCCCCCCCCccCCCCcCccccCCCCCCCCCCccCcCCCCCCCC
Q 013840 183 TEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQGN 262 (435)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (435)
....
T Consensus 78 ~~~~---------------------------------------------------------------------------- 81 (166)
T 3md3_A 78 QSQQ---------------------------------------------------------------------------- 81 (166)
T ss_dssp CCCC----------------------------------------------------------------------------
T ss_pred CCCC----------------------------------------------------------------------------
Confidence 3200
Q ss_pred CCcCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCC
Q 013840 263 AMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGSGG 342 (435)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (435)
T Consensus 82 -------------------------------------------------------------------------------- 81 (166)
T 3md3_A 82 -------------------------------------------------------------------------------- 81 (166)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEE
Q 013840 343 QIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLK 422 (435)
Q Consensus 343 ~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~ 422 (435)
....+.++|||+|||..+|+++|+++|+.||.|.++.++.++.+|.++|+|||+|.+.++|.+|++.|||..++|++|+
T Consensus 82 -~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 160 (166)
T 3md3_A 82 -SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLR 160 (166)
T ss_dssp -CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred -CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEE
Confidence 0111457999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EEEcc
Q 013840 423 VQLKR 427 (435)
Q Consensus 423 v~~a~ 427 (435)
|+||+
T Consensus 161 v~~a~ 165 (166)
T 3md3_A 161 INWAA 165 (166)
T ss_dssp EEESC
T ss_pred EEecC
Confidence 99986
No 6
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=7.3e-32 Score=238.16 Aligned_cols=181 Identities=28% Similarity=0.459 Sum_probs=153.9
Q ss_pred cceEEEecCCCCCCHHHHHHhhhccCCeeEEEEecCC-CCCcccEEEEEeCCHHHHHHHHHHHcCCCcCCCCcceEEEEe
Q 013840 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (435)
Q Consensus 102 ~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~-~~~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~ 180 (435)
.++|||+|||.++++++|+++|+.||.|..|.+..+. ++.++|+|||+|.+.++|.+|++.|++.. +.|+. |.|.+
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~-~~g~~--l~v~~ 104 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVM-LGGRN--IKVGR 104 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCC-CC-CC--CEEEC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCe-eCCee--EEEec
Confidence 5789999999999999999999999999999998876 78899999999999999999999999976 77776 67766
Q ss_pred cCCHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCCCCCCCCCCCCCccCCCCcCccccCCCCCCCCCCccCcCCCCCC
Q 013840 181 ADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQ 260 (435)
Q Consensus 181 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (435)
+...............
T Consensus 105 ~~~~~~~~~~~~~~~~---------------------------------------------------------------- 120 (216)
T 2qfj_A 105 PSNIGQAQPIIDQLAE---------------------------------------------------------------- 120 (216)
T ss_dssp CSCCGGGHHHHHHHHH----------------------------------------------------------------
T ss_pred CCCccccchhhhhhhc----------------------------------------------------------------
Confidence 6554322221111000
Q ss_pred CCCCcCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCC
Q 013840 261 GNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGS 340 (435)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (435)
T Consensus 121 -------------------------------------------------------------------------------- 120 (216)
T 2qfj_A 121 -------------------------------------------------------------------------------- 120 (216)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccCCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeE
Q 013840 341 GGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKK 420 (435)
Q Consensus 341 ~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~ 420 (435)
.....++|||+|||..+|+++|+++|+.||.|.+|.|+.++.+|+++|||||+|.+.++|.+|++.|||..|+|++
T Consensus 121 ----~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~ 196 (216)
T 2qfj_A 121 ----EARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQY 196 (216)
T ss_dssp ----HHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSB
T ss_pred ----ccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcE
Confidence 0014479999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred EEEEEccCCcCCC
Q 013840 421 LKVQLKRDNKQNK 433 (435)
Q Consensus 421 i~v~~a~~~~~~~ 433 (435)
|+|.+++.+....
T Consensus 197 i~V~~a~~~~~~~ 209 (216)
T 2qfj_A 197 LRVGKAVTPPMPL 209 (216)
T ss_dssp CEEEECSSCSSTT
T ss_pred EEEEEecCCCCCC
Confidence 9999999886554
No 7
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=3.7e-32 Score=238.95 Aligned_cols=177 Identities=25% Similarity=0.403 Sum_probs=150.5
Q ss_pred ccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCC
Q 013840 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (435)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~ 87 (435)
.....+.++|||+|||+++|+++|+++|++||+|.+|++++|+.+++++|||||+|.+.++|.+||+.+++.. +.| +
T Consensus 9 ~~p~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~-~~g--~ 85 (213)
T 4f02_A 9 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDV-IKG--K 85 (213)
T ss_dssp ------CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCE-ETT--E
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhh-cCC--c
Confidence 3345677899999999999999999999999999999999999999999999999999999999999999875 444 7
Q ss_pred ceeeeccCchhc---cccceEEEecCCCCCCHHHHHHhhhccCCeeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHHc
Q 013840 88 PLQVKYADGELE---RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAIN 164 (435)
Q Consensus 88 ~i~~~~~~~~~~---~~~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~~~~~~g~afV~f~~~e~a~~a~~~l~ 164 (435)
.+++.++..... ....+|||+|||.++++++|+++|+.||.|..|.++.+.. .++|||||+|.+.++|.+|++.||
T Consensus 86 ~i~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~-~~~g~~fV~f~~~~~a~~Ai~~ln 164 (213)
T 4f02_A 86 PVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-GSKGYGFVHFETQEAAERAIEKMN 164 (213)
T ss_dssp ECEEEECCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-EEEEEEEEEESSHHHHHHHHHHHT
T ss_pred ccccccccccccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCC-CCceEEEEEeCCHHHHHHHHHHhC
Confidence 777777654322 2357899999999999999999999999999999988753 378999999999999999999999
Q ss_pred CCCcCCCCcceEEEEecCCHHHHHHHH
Q 013840 165 GKHKMEGSSVPLVVKWADTEKERQARR 191 (435)
Q Consensus 165 ~~~~~~g~~~~l~v~~a~~~~~~~~~~ 191 (435)
|.. ++|+. |.|.++.++.++....
T Consensus 165 g~~-~~g~~--i~V~~a~~~~~~~~~~ 188 (213)
T 4f02_A 165 GML-LNDRK--VFVGRFKSRKEREAEL 188 (213)
T ss_dssp TCE-ETTEE--CEEEECCCHHHHHHHH
T ss_pred CCE-ECCEE--EEEEEcCCCcccchhh
Confidence 976 77775 8889999877665543
No 8
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.98 E-value=3.6e-31 Score=229.99 Aligned_cols=177 Identities=21% Similarity=0.389 Sum_probs=146.1
Q ss_pred ccccceEEEecCCCCCCHHHHHHhhhccCCeeEEEEecCC-CCCcccEEEEEeCCHHHHHHHHHHHcCCCcCCCCcceEE
Q 013840 99 ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLV 177 (435)
Q Consensus 99 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~-~~~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~ 177 (435)
....++|||+|||.++++++|+++|+.||.|..|.+..+. +|.++|||||+|.+.++|.+|++. ++.. +.|+. |.
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~-~~g~~--l~ 85 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHK-VDGRV--VE 85 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCE-ETTEE--CE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCE-ECCEE--ee
Confidence 3446799999999999999999999999999999998885 688999999999999999999986 6654 77775 66
Q ss_pred EEecCCHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCCCCCCCCCCCCCccCCCCcCccccCCCCCCCCCCccCcCCC
Q 013840 178 VKWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPP 257 (435)
Q Consensus 178 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (435)
+.++.........
T Consensus 86 v~~~~~~~~~~~~------------------------------------------------------------------- 98 (196)
T 1l3k_A 86 PKRAVSREDSQRP------------------------------------------------------------------- 98 (196)
T ss_dssp EEECCC--------------------------------------------------------------------------
T ss_pred eecccCccccccc-------------------------------------------------------------------
Confidence 7666553211000
Q ss_pred CCCCCCCcCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCC
Q 013840 258 VNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGG 337 (435)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (435)
T Consensus 99 -------------------------------------------------------------------------------- 98 (196)
T 1l3k_A 99 -------------------------------------------------------------------------------- 98 (196)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcccCCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeC
Q 013840 338 TGSGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLG 417 (435)
Q Consensus 338 ~~~~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~ 417 (435)
......++|||+|||..+|+++|+++|+.||.|.+|.|+.++.+|.++|||||+|.+.++|.+|++. +|..|+
T Consensus 99 ------~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~ 171 (196)
T 1l3k_A 99 ------GAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVN 171 (196)
T ss_dssp ----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEET
T ss_pred ------ccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEEC
Confidence 0011447999999999999999999999999999999999988999999999999999999999997 899999
Q ss_pred CeEEEEEEccCCcCCC
Q 013840 418 GKKLKVQLKRDNKQNK 433 (435)
Q Consensus 418 gr~i~v~~a~~~~~~~ 433 (435)
|+.|.|.++.++....
T Consensus 172 G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 172 GHNCEVRKALSKQEMA 187 (196)
T ss_dssp TEECEEEECC------
T ss_pred CEEEEEEecCChhHhc
Confidence 9999999999887643
No 9
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.98 E-value=5.2e-31 Score=222.85 Aligned_cols=164 Identities=27% Similarity=0.523 Sum_probs=149.3
Q ss_pred CceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCceeeec
Q 013840 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKY 93 (435)
Q Consensus 14 ~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~~~~ 93 (435)
+++|||+|||+++|+++|+++|+.||.|.+++++.++.++.++|||||+|.+.++|.+|++.|++..+ .+ +.+.+.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~-~g--~~l~v~~ 78 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL-QT--KTIKVSY 78 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE-TT--EECEEEE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCcc-CC--ceEEEEe
Confidence 68999999999999999999999999999999999998899999999999999999999999999764 33 8888888
Q ss_pred cCchhc-cccceEEEecCCCCCCHHHHHHhhhccCCeeEEEEecCC-CCCcccEEEEEeCCHHHHHHHHHHHcCCCcCCC
Q 013840 94 ADGELE-RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEG 171 (435)
Q Consensus 94 ~~~~~~-~~~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~-~~~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g 171 (435)
+.+... ....+|+|+|||..+++++|+++|+.||.|..+.+..+. +|.++|+|||+|.+.++|.+|++.|||.. +.|
T Consensus 79 ~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g 157 (167)
T 1fxl_A 79 ARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK-PSG 157 (167)
T ss_dssp CCCCCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCC-CTT
T ss_pred cCCCcccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCc-cCC
Confidence 765443 346789999999999999999999999999999998875 78889999999999999999999999986 888
Q ss_pred CcceEEEEec
Q 013840 172 SSVPLVVKWA 181 (435)
Q Consensus 172 ~~~~l~v~~a 181 (435)
+.++|.|.||
T Consensus 158 ~~~~i~v~~A 167 (167)
T 1fxl_A 158 ATEPITVKFA 167 (167)
T ss_dssp CSSCCEEEEC
T ss_pred CccceEEEeC
Confidence 8888999886
No 10
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.98 E-value=3.8e-31 Score=225.49 Aligned_cols=167 Identities=29% Similarity=0.538 Sum_probs=147.8
Q ss_pred cceEEEecCCCCCCHHHHHHhhhccCCeeEEEEecCCCC---CcccEEEEEeCCHHHHHHHHHHHcCCCcCCCCcceEEE
Q 013840 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQ---TSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVV 178 (435)
Q Consensus 102 ~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~~~---~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v 178 (435)
.++|||+|||.++++++|+++|+.||+|.+|.+..+..+ +++|||||+|.+.++|.+|++.|++..+..+....+.+
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~ 82 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQM 82 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEE
Confidence 468999999999999999999999999999999888754 78999999999999999999999998877777777777
Q ss_pred EecCCHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCCCCCCCCCCCCCccCCCCcCccccCCCCCCCCCCccCcCCCC
Q 013840 179 KWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPV 258 (435)
Q Consensus 179 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (435)
.++.....
T Consensus 83 ~~~~~~~~------------------------------------------------------------------------ 90 (175)
T 3nmr_A 83 KPADSEKN------------------------------------------------------------------------ 90 (175)
T ss_dssp EECGGGCC------------------------------------------------------------------------
T ss_pred cccccccc------------------------------------------------------------------------
Confidence 76654310
Q ss_pred CCCCCCcCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCC
Q 013840 259 NQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGT 338 (435)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (435)
T Consensus 91 -------------------------------------------------------------------------------- 90 (175)
T 3nmr_A 91 -------------------------------------------------------------------------------- 90 (175)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccCCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeC-
Q 013840 339 GSGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLG- 417 (435)
Q Consensus 339 ~~~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~- 417 (435)
.....++|||+|||..+|+++|+++|+.||.|.++.+++++ +|+++|||||+|.+.++|.+|++.|||..+.
T Consensus 91 ------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~ 163 (175)
T 3nmr_A 91 ------NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTME 163 (175)
T ss_dssp ------SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCT
T ss_pred ------ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccC
Confidence 00144789999999999999999999999999999999986 7999999999999999999999999998776
Q ss_pred --CeEEEEEEcc
Q 013840 418 --GKKLKVQLKR 427 (435)
Q Consensus 418 --gr~i~v~~a~ 427 (435)
|++|+|+||.
T Consensus 164 g~~~~l~V~~ad 175 (175)
T 3nmr_A 164 GCSSPMVVKFAD 175 (175)
T ss_dssp TCSSCCEEEECC
T ss_pred CCCCCeEEEecC
Confidence 4999999974
No 11
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.97 E-value=6.6e-31 Score=222.17 Aligned_cols=163 Identities=27% Similarity=0.567 Sum_probs=145.7
Q ss_pred cceEEEecCCCCCCHHHHHHhhhccCCeeEEEEecCC-CCCcccEEEEEeCCHHHHHHHHHHHcCCCcCCCCcceEEEEe
Q 013840 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (435)
Q Consensus 102 ~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~-~~~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~ 180 (435)
.++|||+|||.++++++|+++|+.||.|..+.+..++ +|.++|+|||+|.+.++|.+|++.+++.. +.|+. +.+.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~-~~g~~--l~v~~ 78 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLR-LQTKT--IKVSY 78 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCE-ETTEE--CEEEE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCc-cCCce--EEEEe
Confidence 4689999999999999999999999999999998887 88899999999999999999999999976 67765 66666
Q ss_pred cCCHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCCCCCCCCCCCCCccCCCCcCccccCCCCCCCCCCccCcCCCCCC
Q 013840 181 ADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQ 260 (435)
Q Consensus 181 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (435)
+.+..
T Consensus 79 ~~~~~--------------------------------------------------------------------------- 83 (167)
T 1fxl_A 79 ARPSS--------------------------------------------------------------------------- 83 (167)
T ss_dssp CCCCC---------------------------------------------------------------------------
T ss_pred cCCCc---------------------------------------------------------------------------
Confidence 64321
Q ss_pred CCCCcCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCC
Q 013840 261 GNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGS 340 (435)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (435)
T Consensus 84 -------------------------------------------------------------------------------- 83 (167)
T 1fxl_A 84 -------------------------------------------------------------------------------- 83 (167)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccCCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeE
Q 013840 341 GGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKK 420 (435)
Q Consensus 341 ~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~ 420 (435)
.....++|||+|||..+|+++|+++|+.||.|.++.++.++.+|.++|+|||+|.+.++|.+|++.|||..+.|+.
T Consensus 84 ----~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 159 (167)
T 1fxl_A 84 ----ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAT 159 (167)
T ss_dssp ----GGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCS
T ss_pred ----ccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCc
Confidence 0013478999999999999999999999999999999999889999999999999999999999999999999964
Q ss_pred --EEEEEc
Q 013840 421 --LKVQLK 426 (435)
Q Consensus 421 --i~v~~a 426 (435)
|+|+||
T Consensus 160 ~~i~v~~A 167 (167)
T 1fxl_A 160 EPITVKFA 167 (167)
T ss_dssp SCCEEEEC
T ss_pred cceEEEeC
Confidence 888886
No 12
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.97 E-value=5.2e-31 Score=223.11 Aligned_cols=163 Identities=28% Similarity=0.514 Sum_probs=146.4
Q ss_pred cceEEEecCCCCCCHHHHHHhhhccCCeeEEEEecCC-CCCcccEEEEEeCCHHHHHHHHHHHcCCCcCCCCcceEEEEe
Q 013840 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (435)
Q Consensus 102 ~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~-~~~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~ 180 (435)
.++|+|+|||.++++++|+++|+.||+|..+.+..+. +|.++|+|||+|.+.++|.+|++.+++.. +.|+. |.+.+
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~-~~g~~--l~v~~ 79 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGIT-VRNKR--LKVSY 79 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCE-ETTEE--CEEEE
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCE-eCCcE--EEEEe
Confidence 4689999999999999999999999999999998775 78889999999999999999999999976 67765 67766
Q ss_pred cCCHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCCCCCCCCCCCCCccCCCCcCccccCCCCCCCCCCccCcCCCCCC
Q 013840 181 ADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQ 260 (435)
Q Consensus 181 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (435)
+.+..
T Consensus 80 ~~~~~--------------------------------------------------------------------------- 84 (168)
T 1b7f_A 80 ARPGG--------------------------------------------------------------------------- 84 (168)
T ss_dssp CCCCS---------------------------------------------------------------------------
T ss_pred cCCCc---------------------------------------------------------------------------
Confidence 65421
Q ss_pred CCCCcCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCC
Q 013840 261 GNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGS 340 (435)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (435)
T Consensus 85 -------------------------------------------------------------------------------- 84 (168)
T 1b7f_A 85 -------------------------------------------------------------------------------- 84 (168)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccCCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCC--
Q 013840 341 GGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGG-- 418 (435)
Q Consensus 341 ~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~g-- 418 (435)
.....++|||+|||..+|+++|+++|+.||.|.++.+++++.+|.++|+|||+|.+.++|.+|++.|||..+.|
T Consensus 85 ----~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 160 (168)
T 1b7f_A 85 ----ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGS 160 (168)
T ss_dssp ----STTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCS
T ss_pred ----ccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCC
Confidence 00144799999999999999999999999999999999998899999999999999999999999999999988
Q ss_pred eEEEEEEc
Q 013840 419 KKLKVQLK 426 (435)
Q Consensus 419 r~i~v~~a 426 (435)
++|+|+||
T Consensus 161 ~~l~V~~A 168 (168)
T 1b7f_A 161 QPLSVRLA 168 (168)
T ss_dssp SCCEEEEC
T ss_pred eEEEEEeC
Confidence 99999986
No 13
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.97 E-value=8.8e-31 Score=221.69 Aligned_cols=165 Identities=29% Similarity=0.525 Sum_probs=148.8
Q ss_pred CCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCceeee
Q 013840 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVK 92 (435)
Q Consensus 13 ~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~~~ 92 (435)
++++|||+|||+++|+++|+++|+.||+|.+++++.++.++.++|||||+|.+.++|++|++.|++..+ . ++.+.+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~-~--g~~l~v~ 78 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITV-R--NKRLKVS 78 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEE-T--TEECEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEe-C--CcEEEEE
Confidence 468999999999999999999999999999999999988899999999999999999999999999764 3 4888888
Q ss_pred ccCchhcc-ccceEEEecCCCCCCHHHHHHhhhccCCeeEEEEecCC-CCCcccEEEEEeCCHHHHHHHHHHHcCCCcCC
Q 013840 93 YADGELER-LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKME 170 (435)
Q Consensus 93 ~~~~~~~~-~~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~-~~~~~g~afV~f~~~e~a~~a~~~l~~~~~~~ 170 (435)
++.+.... ...+|+|+|||..+++++|+++|+.||.|..+.+..+. ++.++|+|||+|.+.++|.+|++.|+|.. +.
T Consensus 79 ~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~ 157 (168)
T 1b7f_A 79 YARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVI-PE 157 (168)
T ss_dssp ECCCCSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCC-CT
T ss_pred ecCCCcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCE-ec
Confidence 88654433 46789999999999999999999999999999998886 88899999999999999999999999986 77
Q ss_pred CCcceEEEEec
Q 013840 171 GSSVPLVVKWA 181 (435)
Q Consensus 171 g~~~~l~v~~a 181 (435)
|+..+|.|.+|
T Consensus 158 g~~~~l~V~~A 168 (168)
T 1b7f_A 158 GGSQPLSVRLA 168 (168)
T ss_dssp TCSSCCEEEEC
T ss_pred CCCeEEEEEeC
Confidence 75566888775
No 14
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.97 E-value=2.8e-31 Score=224.49 Aligned_cols=164 Identities=25% Similarity=0.478 Sum_probs=145.2
Q ss_pred cceEEEecCCCCCCHHHHHHhhhccCCeeEEEEecCC-CCCcccEEEEEeCCHHHHHHHHHHHcCCCcCCCCcceEEEEe
Q 013840 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (435)
Q Consensus 102 ~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~-~~~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~ 180 (435)
.++|||+|||.++++++|+++|+.||.|.+|.+..+. +|.++|||||+|.+.++|.+|++. + ..++|+. +.+.+
T Consensus 3 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~-~~~~g~~--i~v~~ 77 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--Q-HILDGKV--IDPKR 77 (167)
T ss_dssp GGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--C-CEETTEE--CCCEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--c-cccCCeE--ccccc
Confidence 5789999999999999999999999999999998885 788999999999999999999984 3 3477775 55666
Q ss_pred cCCHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCCCCCCCCCCCCCccCCCCcCccccCCCCCCCCCCccCcCCCCCC
Q 013840 181 ADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQ 260 (435)
Q Consensus 181 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (435)
+.+.....
T Consensus 78 ~~~~~~~~------------------------------------------------------------------------ 85 (167)
T 2cjk_A 78 AIPRDEQD------------------------------------------------------------------------ 85 (167)
T ss_dssp CCCHHHHH------------------------------------------------------------------------
T ss_pred ccchhhcc------------------------------------------------------------------------
Confidence 65542110
Q ss_pred CCCCcCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCC
Q 013840 261 GNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGS 340 (435)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (435)
T Consensus 86 -------------------------------------------------------------------------------- 85 (167)
T 2cjk_A 86 -------------------------------------------------------------------------------- 85 (167)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccCCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeE
Q 013840 341 GGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKK 420 (435)
Q Consensus 341 ~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~ 420 (435)
..++|||+|||..+|+++|+++|+.||.|.++.|+.++.+|.++|||||+|.+.++|.+|++ +||..++|++
T Consensus 86 -------~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~ 157 (167)
T 2cjk_A 86 -------KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRK 157 (167)
T ss_dssp -------HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSC
T ss_pred -------CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeE
Confidence 23689999999999999999999999999999999998889999999999999999999998 8999999999
Q ss_pred EEEEEccCCc
Q 013840 421 LKVQLKRDNK 430 (435)
Q Consensus 421 i~v~~a~~~~ 430 (435)
|+|.+|++|.
T Consensus 158 i~V~~a~pk~ 167 (167)
T 2cjk_A 158 IEIKRAEPRH 167 (167)
T ss_dssp EEEEECCCCC
T ss_pred EEEeecCCCC
Confidence 9999998763
No 15
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.97 E-value=5.2e-30 Score=222.66 Aligned_cols=175 Identities=23% Similarity=0.408 Sum_probs=144.4
Q ss_pred cccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCC
Q 013840 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (435)
Q Consensus 7 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~ 86 (435)
...++.+.++|||+|||+++|+++|+++|+.||.|.+|+++.++.++.++|||||+|.+.++|.+||+. ++.. +.|
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~-~~g-- 81 (196)
T 1l3k_A 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHK-VDG-- 81 (196)
T ss_dssp --CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCE-ETT--
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCE-ECC--
Confidence 455667889999999999999999999999999999999999998999999999999999999999976 5543 444
Q ss_pred CceeeeccCchhcc-------ccceEEEecCCCCCCHHHHHHhhhccCCeeEEEEecCC-CCCcccEEEEEeCCHHHHHH
Q 013840 87 SPLQVKYADGELER-------LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALA 158 (435)
Q Consensus 87 ~~i~~~~~~~~~~~-------~~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~-~~~~~g~afV~f~~~e~a~~ 158 (435)
+.+.+.++...... ..++|+|+|||.++++++|+++|+.||.|..|.+..+. ++.++|+|||+|.+.++|.+
T Consensus 82 ~~l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~ 161 (196)
T 1l3k_A 82 RVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDK 161 (196)
T ss_dssp EECEEEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred EEeeeecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHH
Confidence 77777776543322 24789999999999999999999999999999998885 78899999999999999999
Q ss_pred HHHHHcCCCcCCCCcceEEEEecCCHHHHHH
Q 013840 159 ALEAINGKHKMEGSSVPLVVKWADTEKERQA 189 (435)
Q Consensus 159 a~~~l~~~~~~~g~~~~l~v~~a~~~~~~~~ 189 (435)
|++. ++.. ++|+. |.|.++.++.+...
T Consensus 162 A~~~-~~~~-~~G~~--i~v~~a~~k~~~~~ 188 (196)
T 1l3k_A 162 IVIQ-KYHT-VNGHN--CEVRKALSKQEMAS 188 (196)
T ss_dssp HHHC-SCCE-ETTEE--CEEEECC-------
T ss_pred HHHh-CCcE-ECCEE--EEEEecCChhHhcc
Confidence 9986 6654 88875 78888887765433
No 16
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.97 E-value=1.5e-29 Score=223.31 Aligned_cols=169 Identities=20% Similarity=0.351 Sum_probs=146.5
Q ss_pred CccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCce
Q 013840 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (435)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i 89 (435)
...++++|||+|||+++|+++|+++|+.||.|.+++++.++.+++++|||||+|.+.++|.+|++.|++.. +.+ +.|
T Consensus 24 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~-~~g--~~l 100 (216)
T 2qfj_A 24 ALAIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVM-LGG--RNI 100 (216)
T ss_dssp HHHHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCC-CC---CCC
T ss_pred ccCcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCe-eCC--eeE
Confidence 34557899999999999999999999999999999999998889999999999999999999999999975 444 778
Q ss_pred eeeccCchhc------------cccceEEEecCCCCCCHHHHHHhhhccCCeeEEEEecCC-CCCcccEEEEEeCCHHHH
Q 013840 90 QVKYADGELE------------RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQA 156 (435)
Q Consensus 90 ~~~~~~~~~~------------~~~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~-~~~~~g~afV~f~~~e~a 156 (435)
.+.++..... ...++|+|+|||.++++++|+++|+.||.|..+.+..+. ++.++|+|||+|.+.++|
T Consensus 101 ~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A 180 (216)
T 2qfj_A 101 KVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSS 180 (216)
T ss_dssp EEECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred EEecCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHH
Confidence 8777654332 224799999999999999999999999999999998885 788899999999999999
Q ss_pred HHHHHHHcCCCcCCCCcceEEEEecCCH
Q 013840 157 LAALEAINGKHKMEGSSVPLVVKWADTE 184 (435)
Q Consensus 157 ~~a~~~l~~~~~~~g~~~~l~v~~a~~~ 184 (435)
.+|++.||+.. ++|+. |.|.++.+.
T Consensus 181 ~~A~~~l~g~~-~~g~~--i~V~~a~~~ 205 (216)
T 2qfj_A 181 QDAVSSMNLFD-LGGQY--LRVGKAVTP 205 (216)
T ss_dssp HHHHHHHTTCB-CSSSB--CEEEECSSC
T ss_pred HHHHHHccCCE-eCCcE--EEEEEecCC
Confidence 99999999976 78876 677777664
No 17
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=1.7e-28 Score=225.66 Aligned_cols=79 Identities=20% Similarity=0.442 Sum_probs=72.9
Q ss_pred cCCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeC-CeEEEE
Q 013840 345 EGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLG-GKKLKV 423 (435)
Q Consensus 345 ~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~-gr~i~v 423 (435)
..+.+++|||+|||..+|+++|+++|+.||.|.+|+|+.++ +|||||+|.+.++|.+|++.|||..|. |+.|+|
T Consensus 203 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 277 (282)
T 3pgw_A 203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKI 277 (282)
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEE
Confidence 34467899999999999999999999999999999998663 589999999999999999999999999 999999
Q ss_pred EEccC
Q 013840 424 QLKRD 428 (435)
Q Consensus 424 ~~a~~ 428 (435)
+|++.
T Consensus 278 ~~akk 282 (282)
T 3pgw_A 278 SFAKK 282 (282)
T ss_pred EEecC
Confidence 99873
No 18
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.3e-29 Score=213.98 Aligned_cols=161 Identities=21% Similarity=0.403 Sum_probs=142.6
Q ss_pred ceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCceeeecc
Q 013840 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYA 94 (435)
Q Consensus 15 ~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~~~~~ 94 (435)
++|||+|||+++|+++|+++|+.||.|.+++++.++. ++++|||||+|.+.++|.+|++.+++..+ . ++.+.+.++
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~-~--g~~i~v~~~ 76 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQI-E--NNIVKINWA 76 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEE-T--TEECEEEEC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCcc-C--CCeeEEEEc
Confidence 5899999999999999999999999999999999985 77999999999999999999999999864 3 378888777
Q ss_pred Cchh---ccccceEEEecCCCCCCHHHHHHhhhccCCeeEEEEecC-CCCCcccEEEEEeCCHHHHHHHHHHHcCCCcCC
Q 013840 95 DGEL---ERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG-SQQTSKGCAFLKYETKEQALAALEAINGKHKME 170 (435)
Q Consensus 95 ~~~~---~~~~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~-~~~~~~g~afV~f~~~e~a~~a~~~l~~~~~~~ 170 (435)
.... .....+|+|+|||..+++++|+++|+.||.|..+.+..+ .++.++|+|||+|.+.++|.+|++.|+|.. ++
T Consensus 77 ~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~ 155 (166)
T 3md3_A 77 FQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQD-LN 155 (166)
T ss_dssp CCCCCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCE-ET
T ss_pred CCCCCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCc-cC
Confidence 5443 233678999999999999999999999999999999887 478899999999999999999999999976 77
Q ss_pred CCcceEEEEecC
Q 013840 171 GSSVPLVVKWAD 182 (435)
Q Consensus 171 g~~~~l~v~~a~ 182 (435)
|+. |.|.|+.
T Consensus 156 g~~--i~v~~a~ 165 (166)
T 3md3_A 156 GRP--LRINWAA 165 (166)
T ss_dssp TEE--CEEEESC
T ss_pred CcE--EEEEecC
Confidence 775 7777764
No 19
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.97 E-value=7.2e-30 Score=215.82 Aligned_cols=164 Identities=26% Similarity=0.399 Sum_probs=143.2
Q ss_pred cCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCceee
Q 013840 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 91 (435)
Q Consensus 12 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~~ 91 (435)
+++++|||+|||+++|+++|+++|+.||.|.+++++.++.++.++|||||+|.+.++|.+|++. + ..+.| +.+.+
T Consensus 1 k~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~-~~~~g--~~i~v 75 (167)
T 2cjk_A 1 KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--Q-HILDG--KVIDP 75 (167)
T ss_dssp CGGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--C-CEETT--EECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--c-cccCC--eEccc
Confidence 3678999999999999999999999999999999999988999999999999999999999985 2 23444 77777
Q ss_pred eccCchhc-cccceEEEecCCCCCCHHHHHHhhhccCCeeEEEEecCC-CCCcccEEEEEeCCHHHHHHHHHHHcCCCcC
Q 013840 92 KYADGELE-RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKM 169 (435)
Q Consensus 92 ~~~~~~~~-~~~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~-~~~~~g~afV~f~~~e~a~~a~~~l~~~~~~ 169 (435)
.++.+... ....+|+|+|||.++++++|+++|+.||.|..+.+..+. +|.++|+|||+|.+.++|.+|++ +++.. +
T Consensus 76 ~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~-~ 153 (167)
T 2cjk_A 76 KRAIPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFID-F 153 (167)
T ss_dssp EECCCHHHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEEC-S
T ss_pred ccccchhhccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEE-e
Confidence 77655433 236789999999999999999999999999999998885 78899999999999999999998 77755 7
Q ss_pred CCCcceEEEEecCCH
Q 013840 170 EGSSVPLVVKWADTE 184 (435)
Q Consensus 170 ~g~~~~l~v~~a~~~ 184 (435)
+|+. |.|.++.++
T Consensus 154 ~g~~--i~V~~a~pk 166 (167)
T 2cjk_A 154 KDRK--IEIKRAEPR 166 (167)
T ss_dssp SSSC--EEEEECCCC
T ss_pred CCeE--EEEeecCCC
Confidence 7776 788888764
No 20
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.97 E-value=3.6e-29 Score=212.62 Aligned_cols=157 Identities=30% Similarity=0.514 Sum_probs=137.9
Q ss_pred cceEEEecCCCCCCHHHHHHhhhcc----C-------CeeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHHcCCCcCC
Q 013840 102 EHKLFIGMLPKNVSEAEVSALFSIY----G-------TIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKME 170 (435)
Q Consensus 102 ~~~l~v~~lp~~~t~~~l~~~f~~~----g-------~i~~v~~~~~~~~~~~g~afV~f~~~e~a~~a~~~l~~~~~~~ 170 (435)
.++|||+|||.++++++|+++|+.| | .|..+.+..+ +|+|||+|.+.++|.+|+ .+++.. +.
T Consensus 4 ~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~-----~g~afV~f~~~~~A~~A~-~~~~~~-~~ 76 (172)
T 2g4b_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAM-AFDGII-FQ 76 (172)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT-----TTEEEEEESSHHHHHHHG-GGTTCE-ET
T ss_pred ccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC-----CCEEEEEeCCHHHHHHHH-HhCCcE-ec
Confidence 5789999999999999999999999 6 7777777543 899999999999999999 799976 77
Q ss_pred CCcceEEEEecCCHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCCCCCCCCCCCCCccCCCCcCccccCCCCCCCCCC
Q 013840 171 GSSVPLVVKWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPG 250 (435)
Q Consensus 171 g~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (435)
|+. +.+.++....
T Consensus 77 g~~--i~v~~~~~~~----------------------------------------------------------------- 89 (172)
T 2g4b_A 77 GQS--LKIRRPHDYQ----------------------------------------------------------------- 89 (172)
T ss_dssp TEE--CEEECCSSCC-----------------------------------------------------------------
T ss_pred Cce--eeecCCcccC-----------------------------------------------------------------
Confidence 775 5665443210
Q ss_pred ccCcCCCCCCCCCCcCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCC
Q 013840 251 FHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNP 330 (435)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (435)
T Consensus 90 -------------------------------------------------------------------------------- 89 (172)
T 2g4b_A 90 -------------------------------------------------------------------------------- 89 (172)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCCcccCCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHh
Q 013840 331 STSSSGGTGSGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410 (435)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 410 (435)
.....++|||+|||..+|+++|+++|++||.|.++.|+.++.+|.++|+|||+|.+.++|.+|++.
T Consensus 90 --------------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 155 (172)
T 2g4b_A 90 --------------PLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 155 (172)
T ss_dssp --------------CCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHH
T ss_pred --------------CCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Confidence 001247899999999999999999999999999999999988999999999999999999999999
Q ss_pred cCCceeCCeEEEEEEc
Q 013840 411 MNGCQLGGKKLKVQLK 426 (435)
Q Consensus 411 l~g~~l~gr~i~v~~a 426 (435)
|||..++|++|+|+||
T Consensus 156 l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 156 LNGMQLGDKKLLVQRA 171 (172)
T ss_dssp HTTCEETTEECEEEEC
T ss_pred cCCCEECCeEEEEEeC
Confidence 9999999999999997
No 21
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.96 E-value=1.1e-28 Score=214.66 Aligned_cols=183 Identities=27% Similarity=0.456 Sum_probs=144.2
Q ss_pred cceEEEecCCCCCCHHHHHHhhhcc----C-------CeeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHHcCCCcCC
Q 013840 102 EHKLFIGMLPKNVSEAEVSALFSIY----G-------TIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKME 170 (435)
Q Consensus 102 ~~~l~v~~lp~~~t~~~l~~~f~~~----g-------~i~~v~~~~~~~~~~~g~afV~f~~~e~a~~a~~~l~~~~~~~ 170 (435)
.++|||+|||.++++++|+++|+.| | .|..+.+.. ++|||||+|.+.++|.+|+ .|++.. +.
T Consensus 4 ~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~-----~~g~afV~F~~~~~A~~Al-~l~g~~-~~ 76 (198)
T 2yh0_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-----DKNFAFLEFRSVDETTQAM-AFDGII-FQ 76 (198)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEET-----TTTEEEEEESCSHHHHHHG-GGTTEE-ET
T ss_pred eeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecC-----CCCEEEEEeCCHHHHHHHH-HhcCCE-Ec
Confidence 5789999999999999999999999 5 566666643 4899999999999999999 799976 77
Q ss_pred CCcceEEEEecCCHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCCCCCCCCCCCCCccCCCCcCccccCCCCCCCCCC
Q 013840 171 GSSVPLVVKWADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPG 250 (435)
Q Consensus 171 g~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (435)
|+. |.|.++...... +. . . .
T Consensus 77 g~~--i~v~~~~~~~~~---------------~~-----~-----------~--------~------------------- 96 (198)
T 2yh0_A 77 GQS--LKIRRPHDYQPL---------------PG-----M-----------S--------E------------------- 96 (198)
T ss_dssp TEE--EEEECCCCCCCC---------------CC-----S-----------S--------S-------------------
T ss_pred Cce--EEEeCCCCCCCC---------------CC-----C-----------c--------C-------------------
Confidence 775 677666542100 00 0 0 0
Q ss_pred ccCcCCCCCCCCCCcCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCC
Q 013840 251 FHGIIPPVNQGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNP 330 (435)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (435)
.... ..+
T Consensus 97 ---------------------------~~~~---------------------~~~------------------------- 103 (198)
T 2yh0_A 97 ---------------------------NPSV---------------------YVP------------------------- 103 (198)
T ss_dssp ---------------------------CSSC---------------------CCT-------------------------
T ss_pred ---------------------------CCcC---------------------CCC-------------------------
Confidence 0000 000
Q ss_pred CCCCCCCCCCCCcccCCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHh
Q 013840 331 STSSSGGTGSGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410 (435)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 410 (435)
...........++|||+|||..+|+++|+++|+.||.|.+|.++.++.+|.++|||||+|.+.++|.+|++.
T Consensus 104 --------~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 175 (198)
T 2yh0_A 104 --------GVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 175 (198)
T ss_dssp --------TSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHH
T ss_pred --------CCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHH
Confidence 000001123568999999999999999999999999999999999988999999999999999999999999
Q ss_pred cCCceeCCeEEEEEEccCCcCC
Q 013840 411 MNGCQLGGKKLKVQLKRDNKQN 432 (435)
Q Consensus 411 l~g~~l~gr~i~v~~a~~~~~~ 432 (435)
|||..|+|+.|+|++++.+...
T Consensus 176 l~g~~~~g~~l~v~~a~~~~~~ 197 (198)
T 2yh0_A 176 LNGMQLGDKKLLVQRASVGAKN 197 (198)
T ss_dssp HTTCEETTEECEEEESCCCCCC
T ss_pred cCCCEECCEEEEEEECCCCCCC
Confidence 9999999999999999987653
No 22
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.96 E-value=3.2e-30 Score=219.79 Aligned_cols=165 Identities=19% Similarity=0.308 Sum_probs=139.3
Q ss_pred cccceEEEecCCCCCCHHHHHHhhhccCCeeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHHcCCCcCCCCcceEEEE
Q 013840 100 RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (435)
Q Consensus 100 ~~~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~~~~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~ 179 (435)
...++|||+|||.++++++|+++|+.||.+..+.+....++.++|||||+|.+.++|.+|++ |++.. +.|+. |.|.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~-~~g~~--l~v~ 86 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLK-VFGNE--IKLE 86 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEE-ETTEE--EEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCE-eCCeE--EEEe
Confidence 34679999999999999999999999998766444444567789999999999999999995 99976 66765 7777
Q ss_pred ecCCHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCCCCCCCCCCCCCccCCCCcCccccCCCCCCCCCCccCcCCCCC
Q 013840 180 WADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVN 259 (435)
Q Consensus 180 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (435)
++.....
T Consensus 87 ~~~~~~~------------------------------------------------------------------------- 93 (175)
T 1fje_B 87 KPKGRDS------------------------------------------------------------------------- 93 (175)
T ss_dssp CCCCSSC-------------------------------------------------------------------------
T ss_pred cCCCccc-------------------------------------------------------------------------
Confidence 6655310
Q ss_pred CCCCCcCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCC
Q 013840 260 QGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTG 339 (435)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (435)
T Consensus 94 -------------------------------------------------------------------------------- 93 (175)
T 1fje_B 94 -------------------------------------------------------------------------------- 93 (175)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcccCCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCe
Q 013840 340 SGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGK 419 (435)
Q Consensus 340 ~~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr 419 (435)
......++|||+|||..+|+++|+++|+.||.|..+ ..+|.++|||||+|.+.++|.+|++.|||..|+|+
T Consensus 94 ----~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 164 (175)
T 1fje_B 94 ----KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGR 164 (175)
T ss_dssp ----STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTE
T ss_pred ----cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 000145799999999999999999999999998776 35899999999999999999999999999999999
Q ss_pred EEEEEEccCCc
Q 013840 420 KLKVQLKRDNK 430 (435)
Q Consensus 420 ~i~v~~a~~~~ 430 (435)
+|+|+|+++|.
T Consensus 165 ~i~v~~a~~k~ 175 (175)
T 1fje_B 165 SVSLYYTGEKG 175 (175)
T ss_dssp EEEEEECSSCC
T ss_pred EEEEEecCCCC
Confidence 99999998763
No 23
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.96 E-value=5.3e-28 Score=222.51 Aligned_cols=176 Identities=22% Similarity=0.261 Sum_probs=155.6
Q ss_pred cCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCceee
Q 013840 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 91 (435)
Q Consensus 12 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~~ 91 (435)
...++|||+|||+++|+++|+++|+.||.|..++++.++.++.++|||||+|.+.++|.+|++.|++..+ .| +.+.+
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~-~g--~~i~v 169 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPL-GP--RTLYV 169 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE-TT--EECEE
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEe-CC--cEEEE
Confidence 4568999999999999999999999999999999999998999999999999999999999999999754 44 88999
Q ss_pred eccCchhcc----ccceEEEecCCCCC-CHHHHHHhhhccCCeeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHHcCC
Q 013840 92 KYADGELER----LEHKLFIGMLPKNV-SEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGK 166 (435)
Q Consensus 92 ~~~~~~~~~----~~~~l~v~~lp~~~-t~~~l~~~f~~~g~i~~v~~~~~~~~~~~g~afV~f~~~e~a~~a~~~l~~~ 166 (435)
.++.+.... ..++|+|+|||.++ ++++|+++|+.||.|..+.+..+.+|.++|+|||+|.+.++|.+|++.|+|.
T Consensus 170 ~~a~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 249 (284)
T 3smz_A 170 HWTDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGL 249 (284)
T ss_dssp EECCGGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTC
T ss_pred EECCCCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCC
Confidence 888765532 35789999999995 9999999999999999999999989999999999999999999999999998
Q ss_pred CcCCCCcceEEEEecCCHHHHHHHHHH
Q 013840 167 HKMEGSSVPLVVKWADTEKERQARRAQ 193 (435)
Q Consensus 167 ~~~~g~~~~l~v~~a~~~~~~~~~~~~ 193 (435)
. ++|+. |.|.++.++..+.....+
T Consensus 250 ~-~~g~~--l~v~~a~~~~~~~~~~~~ 273 (284)
T 3smz_A 250 S-LGGSH--LRVSFCAPGPPGRSMLAA 273 (284)
T ss_dssp E-ETTEE--CEEEECCSSSCHHHHHHH
T ss_pred c-cCCeE--EEEEEecCCCcccchhhh
Confidence 7 67775 788888777655444333
No 24
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.96 E-value=5.4e-28 Score=209.94 Aligned_cols=194 Identities=19% Similarity=0.322 Sum_probs=139.0
Q ss_pred cceEEEecCC-CCCCHHHHHHhhhccCCeeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHHcCCCcCCCCcceEEEEe
Q 013840 102 EHKLFIGMLP-KNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (435)
Q Consensus 102 ~~~l~v~~lp-~~~t~~~l~~~f~~~g~i~~v~~~~~~~~~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~ 180 (435)
.++|||+||| ..+++++|+++|+.||.|.+|+++.+ .+|+|||+|.+.++|.+|++.|||.. +.|+. |.|.+
T Consensus 4 ~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~lng~~-~~g~~--l~v~~ 76 (205)
T 3tyt_A 4 SPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS----KPGAAMVEMADGYAVDRAITHLNNNF-MFGQK--MNVCV 76 (205)
T ss_dssp CSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT----STTCEEEEESSHHHHHHHHHHHTTCE-ETTEE--CEEEE
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC----CCCEEEEEECCHHHHHHHHHHhCCCE-ECCce--EEEEE
Confidence 4689999999 89999999999999999999999876 37999999999999999999999987 77765 67777
Q ss_pred cCCHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCCCCCCCCCCCCCccCCCCcCccccCCCCCCCCCCccCcCCCCCC
Q 013840 181 ADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQ 260 (435)
Q Consensus 181 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (435)
+..+.. .+.. . .. ...+ ...+ ..
T Consensus 77 s~~~~~---------------~p~~----~--~~-~~~~------~~~~--------~~--------------------- 99 (205)
T 3tyt_A 77 SKQPAI---------------MPGQ----S--YG-LEDG------SCSY--------KD--------------------- 99 (205)
T ss_dssp CSCSCC---------------CCCS----C--CB-CTTS------CBSE--------EE---------------------
T ss_pred ccCCcc---------------CCCc----c--cc-cccC------Cccc--------cc---------------------
Confidence 654310 0000 0 00 0000 0000 00
Q ss_pred CCCCcCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCC
Q 013840 261 GNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGS 340 (435)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (435)
+.+... ....... ..
T Consensus 100 --------------------------~~~~~~--------------------------~r~~~~~-------------~~ 114 (205)
T 3tyt_A 100 --------------------------FSESRN--------------------------NRFSTPE-------------QA 114 (205)
T ss_dssp --------------------------CTTCTT--------------------------CSCSSHH-------------HH
T ss_pred --------------------------cCCCcc--------------------------ccccCcc-------------cc
Confidence 000000 0000000 00
Q ss_pred CCcccCCCCceEEEeCCCCCCCHHHHHHHhhcCCcE--EEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCC
Q 013840 341 GGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRV--LSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGG 418 (435)
Q Consensus 341 ~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v--~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~g 418 (435)
......+++++|||+|||..+|+++|+++|+.||.| .+++++.++ +.++|+|||+|.+.++|.+|+..|||..|.|
T Consensus 115 ~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g 192 (205)
T 3tyt_A 115 AKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKN 192 (205)
T ss_dssp TTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECC
T ss_pred cccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccC
Confidence 000012356899999999999999999999999999 899998774 6667999999999999999999999999988
Q ss_pred e----EEEEEEc
Q 013840 419 K----KLKVQLK 426 (435)
Q Consensus 419 r----~i~v~~a 426 (435)
+ ++.|+|+
T Consensus 193 ~~~~~p~~vk~~ 204 (205)
T 3tyt_A 193 PNGPYPYTLKLC 204 (205)
T ss_dssp SSSSSCEECEEE
T ss_pred CCCCcceEEEec
Confidence 6 6777765
No 25
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.96 E-value=6.7e-28 Score=209.34 Aligned_cols=160 Identities=19% Similarity=0.289 Sum_probs=133.8
Q ss_pred cCCceEEEecCC-CCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCcee
Q 013840 12 EERVKLFVGQVP-KHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (435)
Q Consensus 12 ~~~~~l~v~nLp-~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~ 90 (435)
.++++|||+||| +.+|+++|+++|+.||.|.+|++++++ +|||||+|.+.++|++||+.||+..+ .| +.|.
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~-~g--~~l~ 73 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFM-FG--QKMN 73 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEE-TT--EECE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEE-CC--ceEE
Confidence 367899999999 899999999999999999999997653 68999999999999999999999864 34 7777
Q ss_pred eeccCchhc--------------------------------------cccceEEEecCCCCCCHHHHHHhhhccCCe--e
Q 013840 91 VKYADGELE--------------------------------------RLEHKLFIGMLPKNVSEAEVSALFSIYGTI--K 130 (435)
Q Consensus 91 ~~~~~~~~~--------------------------------------~~~~~l~v~~lp~~~t~~~l~~~f~~~g~i--~ 130 (435)
+.++..... ...++|||+|||+++++++|+++|+.||.| .
T Consensus 74 v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~ 153 (205)
T 3tyt_A 74 VCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPT 153 (205)
T ss_dssp EEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCS
T ss_pred EEEccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceE
Confidence 776532100 013479999999999999999999999998 8
Q ss_pred EEEEecCCCCCcccEEEEEeCCHHHHHHHHHHHcCCCcCCCC--cceEEEEec
Q 013840 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGS--SVPLVVKWA 181 (435)
Q Consensus 131 ~v~~~~~~~~~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~--~~~l~v~~a 181 (435)
++++..+. +..+|+|||+|.+.++|.+|+..|||.. +.|. ..++.|+++
T Consensus 154 ~v~~~~~~-~~~~g~gfV~f~~~~~A~~Ai~~lng~~-~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 154 SVKVFSGK-SERSSSGLLEWDSKSDALETLGFLNHYQ-MKNPNGPYPYTLKLC 204 (205)
T ss_dssp EEEECSCC-SSSSEEEEEECSSHHHHHHHHHHHTTCE-ECCSSSSSCEECEEE
T ss_pred EEEEEcCC-CCCceEEEEEeCCHHHHHHHHHHhCCCC-ccCCCCCcceEEEec
Confidence 99998776 4456999999999999999999999986 5554 345666654
No 26
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.95 E-value=3.8e-27 Score=209.35 Aligned_cols=193 Identities=22% Similarity=0.360 Sum_probs=141.9
Q ss_pred ccceEEEecCCC-CCCHHHHHHhhhccCCeeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHHcCCCcCCCCcceEEEE
Q 013840 101 LEHKLFIGMLPK-NVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVK 179 (435)
Q Consensus 101 ~~~~l~v~~lp~-~~t~~~l~~~f~~~g~i~~v~~~~~~~~~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~ 179 (435)
..++|||+|||. ++++++|+++|+.||.|..|.+..+. +|||||+|.+.++|.+|++.|++.. +.|+. |.|.
T Consensus 33 ~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~----~g~afV~F~~~~~A~~Ai~~l~g~~-~~g~~--l~v~ 105 (229)
T 2adc_A 33 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHK-LHGKP--IRIT 105 (229)
T ss_dssp CCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT----SCCEEEEESCHHHHHHHHHHHTTCB-CSSSB--CEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC----CCEEEEEECCHHHHHHHHHHhCCCe-ECCeE--EEEE
Confidence 467999999999 99999999999999999999998874 7899999999999999999999976 77775 6777
Q ss_pred ecCCHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCCCCCCCCCCCCCccCCCCcCccccCCCCCCCCCCccCcCCCCC
Q 013840 180 WADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVN 259 (435)
Q Consensus 180 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (435)
++...... .+....... . ....+
T Consensus 106 ~a~~~~~~--------------~~~~~~~~~----------------------~--~~~~~------------------- 128 (229)
T 2adc_A 106 LSKHQNVQ--------------LPREGQEDQ----------------------G--LTKDY------------------- 128 (229)
T ss_dssp CCSCCCCC--------------CCCSSSSTT----------------------T--TEEEC-------------------
T ss_pred EecCcccc--------------Ccccccccc----------------------c--ccccc-------------------
Confidence 76543100 000000000 0 00000
Q ss_pred CCCCCcCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCC
Q 013840 260 QGNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTG 339 (435)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (435)
. ..... .. . ....
T Consensus 129 ---------------------~-------~~~~~---~~-----------------------~-------------~~~~ 141 (229)
T 2adc_A 129 ---------------------G-------NSPLH---RF-----------------------K-------------KPGS 141 (229)
T ss_dssp ---------------------T-------TCSSC---CC-----------------------C-------------STTS
T ss_pred ---------------------c-------cCccc---cc-----------------------C-------------Cccc
Confidence 0 00000 00 0 0000
Q ss_pred CCCcccCCCCceEEEeCCCCCCCHHHHHHHhhcCC-cEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeC-
Q 013840 340 SGGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFG-RVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLG- 417 (435)
Q Consensus 340 ~~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG-~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~- 417 (435)
.......+++++|||+|||..+|+++|+++|+.|| .|.+|.|+.+ .+|+|||+|.+.++|.+|++.|||..+.
T Consensus 142 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~ 216 (229)
T 2adc_A 142 KNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGE 216 (229)
T ss_dssp GGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred cccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCC
Confidence 00000123568999999999999999999999999 9999999653 2689999999999999999999999999
Q ss_pred CeEEEEEEccCC
Q 013840 418 GKKLKVQLKRDN 429 (435)
Q Consensus 418 gr~i~v~~a~~~ 429 (435)
|++|+|+|++++
T Consensus 217 g~~l~v~~a~~~ 228 (229)
T 2adc_A 217 NHHLRVSFSKST 228 (229)
T ss_dssp SCBCEEEECSSC
T ss_pred CCeEEEEEecCC
Confidence 999999999864
No 27
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.95 E-value=2.1e-27 Score=215.24 Aligned_cols=157 Identities=27% Similarity=0.461 Sum_probs=139.9
Q ss_pred ccceEEEecCCCCCCHHHHHHhhhccCCeeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHHcCCCcCCCCcceEEEEe
Q 013840 101 LEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (435)
Q Consensus 101 ~~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~~~~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~ 180 (435)
..++|||+|||.++|+++|+++|+.||.|..|.+.++ +|+|||+|.+.++|.+|++.++|.. +.|+. |.|.+
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----kg~afV~f~~~~~A~~A~~~l~g~~-i~g~~--l~v~~ 92 (261)
T 3sde_A 21 QRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD-----RGFGFIRLESRTLAEIAKAELDGTI-LKSRP--LRIRF 92 (261)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT-----TTEEEEECSSHHHHHHHHHHHTTCE-ETTEE--CEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CcEEEEEECCHHHHHHHHHHcCCcE-ECCce--eEeee
Confidence 3578999999999999999999999999999999654 7999999999999999999999976 67765 66665
Q ss_pred cCCHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCCCCCCCCCCCCCccCCCCcCccccCCCCCCCCCCccCcCCCCCC
Q 013840 181 ADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQ 260 (435)
Q Consensus 181 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (435)
+.+
T Consensus 93 a~~----------------------------------------------------------------------------- 95 (261)
T 3sde_A 93 ATH----------------------------------------------------------------------------- 95 (261)
T ss_dssp CCC-----------------------------------------------------------------------------
T ss_pred ccc-----------------------------------------------------------------------------
Confidence 432
Q ss_pred CCCCcCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCC
Q 013840 261 GNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGS 340 (435)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (435)
T Consensus 96 -------------------------------------------------------------------------------- 95 (261)
T 3sde_A 96 -------------------------------------------------------------------------------- 95 (261)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccCCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcC-CceeC--
Q 013840 341 GGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMN-GCQLG-- 417 (435)
Q Consensus 341 ~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~-g~~l~-- 417 (435)
.++|||+|||..+|+++|+++|+.||.|.+|.|+.+ .+|+++|||||+|.+.++|.+|+..|| +..+.
T Consensus 96 --------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~ 166 (261)
T 3sde_A 96 --------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTT 166 (261)
T ss_dssp --------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSS
T ss_pred --------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecC
Confidence 258999999999999999999999999999999999 489999999999999999999999994 55555
Q ss_pred -CeEEEEEEccCCcC
Q 013840 418 -GKKLKVQLKRDNKQ 431 (435)
Q Consensus 418 -gr~i~v~~a~~~~~ 431 (435)
+|+|.|.++.....
T Consensus 167 ~~r~i~v~~~~~~~~ 181 (261)
T 3sde_A 167 TPRPVIVEPMEQFDD 181 (261)
T ss_dssp SCCBCEEEECCCEES
T ss_pred CCceEEEeeccccCc
Confidence 99999999987653
No 28
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.95 E-value=9.3e-28 Score=203.84 Aligned_cols=157 Identities=27% Similarity=0.445 Sum_probs=135.6
Q ss_pred cCCceEEEecCCCCCCHHHHHHHHhcc----C-------ceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCC
Q 013840 12 EERVKLFVGQVPKHMTEAQLLAMFKEF----A-------LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKK 80 (435)
Q Consensus 12 ~~~~~l~v~nLp~~~t~~~l~~~f~~~----g-------~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~ 80 (435)
+++++|||+|||+++|+++|+++|+.| | .|.++++. +++|||||+|.+.++|.+|+ .+++..
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~ 74 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGII 74 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcE
Confidence 367899999999999999999999999 6 66666653 45689999999999999999 898875
Q ss_pred cCCCCCCceeeeccCchhc-cccceEEEecCCCCCCHHHHHHhhhccCCeeEEEEecCC-CCCcccEEEEEeCCHHHHHH
Q 013840 81 TLPGASSPLQVKYADGELE-RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALA 158 (435)
Q Consensus 81 ~~~~~~~~i~~~~~~~~~~-~~~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~-~~~~~g~afV~f~~~e~a~~ 158 (435)
+.| +.+.+.++..... ....+|+|+|||.++++++|+++|+.||+|..+.+..++ +|.++|+|||+|.+.++|.+
T Consensus 75 -~~g--~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~ 151 (172)
T 2g4b_A 75 -FQG--QSLKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQ 151 (172)
T ss_dssp -ETT--EECEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHH
T ss_pred -ecC--ceeeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHH
Confidence 444 7888887754432 336789999999999999999999999999999998885 88899999999999999999
Q ss_pred HHHHHcCCCcCCCCcceEEEEec
Q 013840 159 ALEAINGKHKMEGSSVPLVVKWA 181 (435)
Q Consensus 159 a~~~l~~~~~~~g~~~~l~v~~a 181 (435)
|++.|||.. ++|+. |.|.+|
T Consensus 152 A~~~l~g~~-~~g~~--l~V~~A 171 (172)
T 2g4b_A 152 AIAGLNGMQ-LGDKK--LLVQRA 171 (172)
T ss_dssp HHHHHTTCE-ETTEE--CEEEEC
T ss_pred HHHHcCCCE-ECCeE--EEEEeC
Confidence 999999976 77775 677766
No 29
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.95 E-value=2.7e-27 Score=205.77 Aligned_cols=192 Identities=22% Similarity=0.352 Sum_probs=141.3
Q ss_pred cceEEEecCCC-CCCHHHHHHhhhccCCeeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHHcCCCcCCCCcceEEEEe
Q 013840 102 EHKLFIGMLPK-NVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (435)
Q Consensus 102 ~~~l~v~~lp~-~~t~~~l~~~f~~~g~i~~v~~~~~~~~~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~ 180 (435)
.++|||+|||. ++++++|+++|+.||.|..|.+..+. +|+|||+|.+.++|.+|++.|++.. +.|+. |.|.+
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~----~g~afV~f~~~~~a~~A~~~l~~~~-~~g~~--l~v~~ 75 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHK-LHGKP--IRITL 75 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC----SSCCEEECTTTHHHHHHHHHHTTCC-CSSCC--CEEEE
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCe-ecCeE--EEEEE
Confidence 46899999999 99999999999999999999998874 7899999999999999999999976 77776 67777
Q ss_pred cCCHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCCCCCCCCCCCCCccCCCCcCccccCCCCCCCCCCccCcCCCCCC
Q 013840 181 ADTEKERQARRAQKAQSQANNLPNADSQHPSLFGALPMGYAPPYNGYGYQASGSYGLMQYRLPPMQNQPGFHGIIPPVNQ 260 (435)
Q Consensus 181 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (435)
+..... ..+..... . .+ ....+
T Consensus 76 a~~~~~--------------~~~~~~~~----~------------------~~--~~~~~-------------------- 97 (198)
T 1qm9_A 76 SKHQNV--------------QLPREGQE----D------------------QG--LTKDY-------------------- 97 (198)
T ss_dssp CCCCSC--------------CCSSSSSS----S------------------SS--CEEES--------------------
T ss_pred ecCCCc--------------CCCCcCCc----c------------------cc--ccccc--------------------
Confidence 655310 00000000 0 00 00000
Q ss_pred CCCCcCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCC
Q 013840 261 GNAMRGASPDLSSNMGPRNYAMPPSGFVGSGYPAVPGLQYPMPYPGGMLGHRPLNNSPGSVSPAVANSNPSTSSSGGTGS 340 (435)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (435)
.+...... .. ....
T Consensus 98 ---------------------------~~~~~~r~--------------------------~~-------------~~~~ 111 (198)
T 1qm9_A 98 ---------------------------GNSPLHRF--------------------------KK-------------PGSK 111 (198)
T ss_dssp ---------------------------SCCCTTSS--------------------------SS-------------CCCC
T ss_pred ---------------------------cCCchhhc--------------------------cC-------------cccc
Confidence 00000000 00 0000
Q ss_pred CCcccCCCCceEEEeCCCCCCCHHHHHHHhhcCC-cEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeC-C
Q 013840 341 GGQIEGPPGANLFIYHIPQEFGDQELGNAFQAFG-RVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLG-G 418 (435)
Q Consensus 341 ~~~~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG-~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~-g 418 (435)
......+++++|||+|||..+|+++|+++|+.|| .|.+|.|+++. +|+|||+|.+.++|.+|++.|||..++ |
T Consensus 112 ~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g 186 (198)
T 1qm9_A 112 NFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQALIDLHNHDLGEN 186 (198)
T ss_dssp CCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-----SSCEEEECSSHHHHHHHHHHHTSSCCSSC
T ss_pred ccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhcCCccCCC
Confidence 0000123578999999999999999999999999 99999997542 689999999999999999999999999 9
Q ss_pred eEEEEEEccCC
Q 013840 419 KKLKVQLKRDN 429 (435)
Q Consensus 419 r~i~v~~a~~~ 429 (435)
++|+|+|++++
T Consensus 187 ~~l~v~~a~~~ 197 (198)
T 1qm9_A 187 HHLRVSFSKST 197 (198)
T ss_dssp CSCCEEEECCC
T ss_pred CeEEEEeeccc
Confidence 99999999864
No 30
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.95 E-value=2.2e-28 Score=208.28 Aligned_cols=165 Identities=21% Similarity=0.314 Sum_probs=140.0
Q ss_pred ccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCC
Q 013840 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (435)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~ 87 (435)
..++.+.++|||+|||+++|+++|+++|+.||.+.. .++.+..++.++|||||+|.+.++|.+|+ .|++..+ . ++
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~-~--g~ 81 (175)
T 1fje_B 7 GSESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKV-F--GN 81 (175)
T ss_dssp SSSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEE-T--TE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEe-C--Ce
Confidence 346778999999999999999999999999998766 33445556889999999999999999999 5988754 3 48
Q ss_pred ceeeeccCchhc---cccceEEEecCCCCCCHHHHHHhhhccCCeeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHHc
Q 013840 88 PLQVKYADGELE---RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAIN 164 (435)
Q Consensus 88 ~i~~~~~~~~~~---~~~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~~~~~~g~afV~f~~~e~a~~a~~~l~ 164 (435)
.+.+.++..... ...++|+|+|||.++++++|+++|+.||.|..+ ..++.++|+|||+|.+.++|.+|++.|+
T Consensus 82 ~l~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~A~~A~~~l~ 157 (175)
T 1fje_B 82 EIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQ 157 (175)
T ss_dssp EEEEECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSSSSCCSEEEEECSSHHHHHHHHHHHT
T ss_pred EEEEecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCCCCCceEEEEEECCHHHHHHHHHHhC
Confidence 888888865433 346799999999999999999999999988766 5577889999999999999999999999
Q ss_pred CCCcCCCCcceEEEEecCCH
Q 013840 165 GKHKMEGSSVPLVVKWADTE 184 (435)
Q Consensus 165 ~~~~~~g~~~~l~v~~a~~~ 184 (435)
|.. ++|+. |.|.|+.++
T Consensus 158 g~~-~~g~~--i~v~~a~~k 174 (175)
T 1fje_B 158 GAE-IDGRS--VSLYYTGEK 174 (175)
T ss_dssp EEE-ETTEE--EEEEECSSC
T ss_pred CCE-ECCeE--EEEEecCCC
Confidence 976 77775 788888653
No 31
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.95 E-value=1.9e-26 Score=204.88 Aligned_cols=160 Identities=20% Similarity=0.352 Sum_probs=137.1
Q ss_pred cCccCCceEEEecCCC-CCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCC
Q 013840 9 KSSEERVKLFVGQVPK-HMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (435)
Q Consensus 9 ~~~~~~~~l~v~nLp~-~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~ 87 (435)
....++++|||+|||+ ++|+++|+++|+.||.|.+|+++.++ +|||||+|.+.++|++|++.|++..+ .| +
T Consensus 29 ~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~-~g--~ 100 (229)
T 2adc_A 29 LAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKL-HG--K 100 (229)
T ss_dssp GGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBC-SS--S
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeE-CC--e
Confidence 3456789999999999 99999999999999999999998875 67999999999999999999999754 44 7
Q ss_pred ceeeeccCchh------------------------------------ccccceEEEecCCCCCCHHHHHHhhhccC-Cee
Q 013840 88 PLQVKYADGEL------------------------------------ERLEHKLFIGMLPKNVSEAEVSALFSIYG-TIK 130 (435)
Q Consensus 88 ~i~~~~~~~~~------------------------------------~~~~~~l~v~~lp~~~t~~~l~~~f~~~g-~i~ 130 (435)
.|.+.++.... ....++|+|+|||..+++++|+++|+.|| .|.
T Consensus 101 ~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~ 180 (229)
T 2adc_A 101 PIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVK 180 (229)
T ss_dssp BCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEE
T ss_pred EEEEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCee
Confidence 78887765321 01147899999999999999999999999 999
Q ss_pred EEEEecCCCCCcccEEEEEeCCHHHHHHHHHHHcCCCcCC-CCcceEEEEecCC
Q 013840 131 DLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKME-GSSVPLVVKWADT 183 (435)
Q Consensus 131 ~v~~~~~~~~~~~g~afV~f~~~e~a~~a~~~l~~~~~~~-g~~~~l~v~~a~~ 183 (435)
.+.+... .+|+|||+|.+.++|.+|++.|+|.. +. |+. |.|.|+.+
T Consensus 181 ~v~i~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~-~~~g~~--l~v~~a~~ 227 (229)
T 2adc_A 181 GFKFFQK----DRKMALIQMGSVEEAVQALIDLHNHD-LGENHH--LRVSFSKS 227 (229)
T ss_dssp EEEECSS----STTCEEEEESSHHHHHHHHHHHTTCB-SSSSCB--CEEEECSS
T ss_pred EEEEEEC----CCcEEEEEECCHHHHHHHHHHHCCCc-cCCCCe--EEEEEecC
Confidence 9999654 37899999999999999999999987 55 765 78888765
No 32
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.95 E-value=1.4e-26 Score=209.86 Aligned_cols=164 Identities=25% Similarity=0.405 Sum_probs=142.4
Q ss_pred cccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCC
Q 013840 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (435)
Q Consensus 7 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~ 86 (435)
........++|||+|||+++|+++|+++|+.||.|..|++.++ +|||||+|.+.++|.+|++.+++..+ .|
T Consensus 15 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i-~g-- 85 (261)
T 3sde_A 15 GEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTIL-KS-- 85 (261)
T ss_dssp TCCSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEE-TT--
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEE-CC--
Confidence 3445577789999999999999999999999999999998543 57999999999999999999999854 44
Q ss_pred CceeeeccCchhccccceEEEecCCCCCCHHHHHHhhhccCCeeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHHc-C
Q 013840 87 SPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAIN-G 165 (435)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~~~~~~g~afV~f~~~e~a~~a~~~l~-~ 165 (435)
+.+.+.++.+ ..+|+|+|||..+++++|+++|+.||.|..|.+..+.+|.++|+|||+|.+.++|.+|++.|+ +
T Consensus 86 ~~l~v~~a~~-----~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~ 160 (261)
T 3sde_A 86 RPLRIRFATH-----GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDG 160 (261)
T ss_dssp EECEEEECCC-----SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHS
T ss_pred ceeEeeeccc-----CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCC
Confidence 8888888764 468999999999999999999999999999999988899999999999999999999999994 5
Q ss_pred CCcCCCCcceEEEEecCCH
Q 013840 166 KHKMEGSSVPLVVKWADTE 184 (435)
Q Consensus 166 ~~~~~g~~~~l~v~~a~~~ 184 (435)
..++.+...++.|.++...
T Consensus 161 ~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 161 AFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp CEESSSSCCBCEEEECCCE
T ss_pred eEEecCCCceEEEeecccc
Confidence 4444444556888888654
No 33
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.95 E-value=1.9e-26 Score=211.85 Aligned_cols=162 Identities=21% Similarity=0.425 Sum_probs=137.9
Q ss_pred cCccCCceEEEecCCCCCCHHHHH----HHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCC
Q 013840 9 KSSEERVKLFVGQVPKHMTEAQLL----AMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (435)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~t~~~l~----~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~ 84 (435)
.+..++++|||+|||+++|+++|+ ++|+.||.|.+|++.+ +++++|||||+|.+.++|++|++.||+..+ .|
T Consensus 4 ~~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g 79 (282)
T 3pgw_A 4 PETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPF-YD 79 (282)
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCee-CC
Confidence 356778999999999999999977 8999999999998876 577999999999999999999999999754 44
Q ss_pred CCCceeeeccCchhc-----------------------------------------------------------------
Q 013840 85 ASSPLQVKYADGELE----------------------------------------------------------------- 99 (435)
Q Consensus 85 ~~~~i~~~~~~~~~~----------------------------------------------------------------- 99 (435)
+.|++.++.....
T Consensus 80 --~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (282)
T 3pgw_A 80 --KPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHM 157 (282)
T ss_pred --cEEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccC
Confidence 7788777644321
Q ss_pred -----------------------------------------------cccceEEEecCCCCCCHHHHHHhhhccCCeeEE
Q 013840 100 -----------------------------------------------RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDL 132 (435)
Q Consensus 100 -----------------------------------------------~~~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v 132 (435)
...++|||+|||..+++++|+++|+.||.|..|
T Consensus 158 ~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v 237 (282)
T 3pgw_A 158 PGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEV 237 (282)
T ss_pred CCCCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEE
Confidence 023679999999999999999999999999999
Q ss_pred EEecCCCCCcccEEEEEeCCHHHHHHHHHHHcCCCcCCCCcceEEEEecC
Q 013840 133 QILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWAD 182 (435)
Q Consensus 133 ~~~~~~~~~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~a~ 182 (435)
.+..+. +|+|||+|.+.++|.+|++.|||..+..|+. |.|.|+.
T Consensus 238 ~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~--l~v~~ak 281 (282)
T 3pgw_A 238 RLVPGR----HDIAFVEFDNEVQAGAARDALQGFKITQNNA--MKISFAK 281 (282)
T ss_pred EEecCC----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCE--EEEEEec
Confidence 998663 5899999999999999999999977432765 7787764
No 34
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.95 E-value=6.1e-27 Score=203.57 Aligned_cols=160 Identities=26% Similarity=0.445 Sum_probs=135.3
Q ss_pred cCCceEEEecCCCCCCHHHHHHHHhcc----C-------ceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCC
Q 013840 12 EERVKLFVGQVPKHMTEAQLLAMFKEF----A-------LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKK 80 (435)
Q Consensus 12 ~~~~~l~v~nLp~~~t~~~l~~~f~~~----g-------~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~ 80 (435)
..+++|||+|||+++|+++|+++|+.| | .|.++.+ ++++|||||+|.+.++|++|| .|++..
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~ 74 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGII 74 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEE
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCE
Confidence 357899999999999999999999999 4 5555554 456789999999999999999 888875
Q ss_pred cCCCCCCceeeeccCchhc---------------------cccceEEEecCCCCCCHHHHHHhhhccCCeeEEEEecCC-
Q 013840 81 TLPGASSPLQVKYADGELE---------------------RLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS- 138 (435)
Q Consensus 81 ~~~~~~~~i~~~~~~~~~~---------------------~~~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~- 138 (435)
+.| +.+.+.++..... ...++|+|+|||..+++++|+++|+.||.|..+.+..+.
T Consensus 75 -~~g--~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~ 151 (198)
T 2yh0_A 75 -FQG--QSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSA 151 (198)
T ss_dssp -ETT--EEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTT
T ss_pred -EcC--ceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCC
Confidence 444 7888887654311 235799999999999999999999999999999998886
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHHcCCCcCCCCcceEEEEecCCH
Q 013840 139 QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 184 (435)
Q Consensus 139 ~~~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~a~~~ 184 (435)
++.++|+|||+|.+.++|.+|++.|+|.. ++|+. |.|.++.++
T Consensus 152 ~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g~~--l~v~~a~~~ 194 (198)
T 2yh0_A 152 TGLSKGYAFCEYVDINVTDQAIAGLNGMQ-LGDKK--LLVQRASVG 194 (198)
T ss_dssp TCSEEEEEEEEESSSSHHHHHHHHHTTCE-ETTEE--CEEEESCCC
T ss_pred CCCcceEEEEEECCHHHHHHHHHHcCCCE-ECCEE--EEEEECCCC
Confidence 88899999999999999999999999976 77775 777777654
No 35
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.94 E-value=2e-26 Score=200.23 Aligned_cols=156 Identities=21% Similarity=0.362 Sum_probs=133.5
Q ss_pred CCceEEEecCCC-CCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCceee
Q 013840 13 ERVKLFVGQVPK-HMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 91 (435)
Q Consensus 13 ~~~~l~v~nLp~-~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~~ 91 (435)
.+++|||+|||+ ++|+++|+++|+.||.|.+|+++.++ +|||||+|.+.++|++|++.|++..+ .| +.+.+
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~-~g--~~l~v 73 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKL-HG--KPIRI 73 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCC-SS--CCCEE
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCee-cC--eEEEE
Confidence 468999999999 99999999999999999999987765 67999999999999999999999764 44 77777
Q ss_pred eccCchh------------------------------------ccccceEEEecCCCCCCHHHHHHhhhccC-CeeEEEE
Q 013840 92 KYADGEL------------------------------------ERLEHKLFIGMLPKNVSEAEVSALFSIYG-TIKDLQI 134 (435)
Q Consensus 92 ~~~~~~~------------------------------------~~~~~~l~v~~lp~~~t~~~l~~~f~~~g-~i~~v~~ 134 (435)
.++.... ....++|+|+|||..+++++|+++|+.|| .|..+.+
T Consensus 74 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i 153 (198)
T 1qm9_A 74 TLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKF 153 (198)
T ss_dssp EECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEE
T ss_pred EEecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEE
Confidence 7664321 01156899999999999999999999999 9999999
Q ss_pred ecCCCCCcccEEEEEeCCHHHHHHHHHHHcCCCcCC-CCcceEEEEecCC
Q 013840 135 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHKME-GSSVPLVVKWADT 183 (435)
Q Consensus 135 ~~~~~~~~~g~afV~f~~~e~a~~a~~~l~~~~~~~-g~~~~l~v~~a~~ 183 (435)
..+ .+|+|||+|.+.++|.+|++.|+|.. ++ |+. |.|.|+.+
T Consensus 154 ~~~----~~g~afV~f~~~~~A~~A~~~l~g~~-~~~g~~--l~v~~a~~ 196 (198)
T 1qm9_A 154 FQK----DRKMALIQMGSVEEAVQALIDLHNHD-LGENHH--LRVSFSKS 196 (198)
T ss_dssp SST----TSSCEEEECSSHHHHHHHHHHHTSSC-CSSCCS--CCEEEECC
T ss_pred EeC----CCcEEEEEeCCHHHHHHHHHHhcCCc-cCCCCe--EEEEeecc
Confidence 764 27899999999999999999999987 55 775 67777654
No 36
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.94 E-value=1.8e-26 Score=213.15 Aligned_cols=165 Identities=19% Similarity=0.328 Sum_probs=139.3
Q ss_pred cCCceEEEecCCCCCCHHHHHHHHhccC-ceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCcee
Q 013840 12 EERVKLFVGQVPKHMTEAQLLAMFKEFA-LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (435)
Q Consensus 12 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~ 90 (435)
...++|||+|||+++|+++|+++|+.|| .|..++++.++. +.++|||||+|.+.++|.+|++.|++..+ .| +.+.
T Consensus 115 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g--~~l~ 190 (292)
T 2ghp_A 115 LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKI-EG--YTLV 190 (292)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEE-TT--EECE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEe-CC--cEEE
Confidence 3578999999999999999999999999 999999998886 78999999999999999999999999764 44 8888
Q ss_pred eeccCchhcc--------ccceEEEecCCCC-CCHHHHHHhhhccCCeeEEEEecCCC--CCcccEEEEEeCCHHHHHHH
Q 013840 91 VKYADGELER--------LEHKLFIGMLPKN-VSEAEVSALFSIYGTIKDLQILRGSQ--QTSKGCAFLKYETKEQALAA 159 (435)
Q Consensus 91 ~~~~~~~~~~--------~~~~l~v~~lp~~-~t~~~l~~~f~~~g~i~~v~~~~~~~--~~~~g~afV~f~~~e~a~~a 159 (435)
+.++.+.... ..++|+|+|||.. +++++|+++|+.||.|..|.+..+.. |.++|+|||+|.+.++|.+|
T Consensus 191 v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A 270 (292)
T 2ghp_A 191 TKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERA 270 (292)
T ss_dssp EEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHH
T ss_pred EEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHH
Confidence 8887654332 2478999999999 99999999999999999999998876 88999999999999999999
Q ss_pred HHHHcCCCcCCCCcceEEEEecCCH
Q 013840 160 LEAINGKHKMEGSSVPLVVKWADTE 184 (435)
Q Consensus 160 ~~~l~~~~~~~g~~~~l~v~~a~~~ 184 (435)
+ .|||.. ++|+. |.|.|+.++
T Consensus 271 ~-~l~g~~-~~g~~--i~V~~a~~k 291 (292)
T 2ghp_A 271 L-QMNRSL-LGNRE--ISVSLADKK 291 (292)
T ss_dssp G-GGTTEE-ETTEE--EEEEECCCC
T ss_pred H-HhcCCE-ECCcE--EEEEEecCC
Confidence 9 999976 77765 788887653
No 37
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.90 E-value=6.4e-23 Score=171.16 Aligned_cols=86 Identities=26% Similarity=0.422 Sum_probs=81.5
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 427 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a~ 427 (435)
..++|||+|||..+|+++|+++|+.||.|.+|.|+.++.+|+++|||||+|.+.++|.+|++.|||..|+|++|+|.+++
T Consensus 69 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 148 (158)
T 2kn4_A 69 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 148 (158)
T ss_dssp BCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 46899999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred CCcCCC
Q 013840 428 DNKQNK 433 (435)
Q Consensus 428 ~~~~~~ 433 (435)
.+....
T Consensus 149 ~~~~~~ 154 (158)
T 2kn4_A 149 YGRPPD 154 (158)
T ss_dssp CSSCCC
T ss_pred CCCCCC
Confidence 876544
No 38
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.89 E-value=1.1e-22 Score=154.67 Aligned_cols=81 Identities=38% Similarity=0.612 Sum_probs=78.5
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 427 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a~ 427 (435)
.+++|||+|||.++|+++|+++|++||+|.+|+|++++.+|+++|||||+|.++++|.+|++.|||..|+|++|+|+||+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 56899999999999999999999999999999999999899999999999999999999999999999999999999997
Q ss_pred C
Q 013840 428 D 428 (435)
Q Consensus 428 ~ 428 (435)
+
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 5
No 39
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.86 E-value=1.9e-21 Score=150.66 Aligned_cols=85 Identities=14% Similarity=0.206 Sum_probs=80.7
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 013840 347 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 426 (435)
Q Consensus 347 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a 426 (435)
++.++|||+|||.++|+++|+++|++||+|.+|.|+.++.+|+++|||||+|.+.++|.+|++.|||..|.|+.|+|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 36689999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred cCCcC
Q 013840 427 RDNKQ 431 (435)
Q Consensus 427 ~~~~~ 431 (435)
+.+..
T Consensus 84 ~~~~~ 88 (110)
T 3s8s_A 84 IKGQQ 88 (110)
T ss_dssp STTHH
T ss_pred CCCcH
Confidence 87643
No 40
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.85 E-value=5.4e-22 Score=148.50 Aligned_cols=84 Identities=15% Similarity=0.333 Sum_probs=77.9
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhcCC-cEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhc-CCceeCCeEEEEEEc
Q 013840 349 GANLFIYHIPQEFGDQELGNAFQAFG-RVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM-NGCQLGGKKLKVQLK 426 (435)
Q Consensus 349 ~~~v~V~nLp~~~t~~~L~~~F~~fG-~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l-~g~~l~gr~i~v~~a 426 (435)
+.+|||+|||.++|+++|+++|+.|| +|.+|+|++++.+|.++|||||+|.+.++|.+|++.+ |+..++||+|+|+||
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 8999999999989999999999999999999999987 466899999999999
Q ss_pred cCCcCC
Q 013840 427 RDNKQN 432 (435)
Q Consensus 427 ~~~~~~ 432 (435)
+++.+.
T Consensus 81 ~~~~~~ 86 (91)
T 2lxi_A 81 DPKPKI 86 (91)
T ss_dssp CSCCCC
T ss_pred CCCCCC
Confidence 887643
No 41
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.85 E-value=9.4e-21 Score=148.89 Aligned_cols=90 Identities=67% Similarity=1.084 Sum_probs=84.5
Q ss_pred cCCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEE
Q 013840 345 EGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 424 (435)
Q Consensus 345 ~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~ 424 (435)
..++.++|||+|||.++|+++|+++|+.||.|.+|.|+.++.+++++|||||+|.+.++|.+|++.||+..|.|++|+|+
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34467899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EccCCcCCCC
Q 013840 425 LKRDNKQNKP 434 (435)
Q Consensus 425 ~a~~~~~~~~ 434 (435)
|++.+...+|
T Consensus 101 ~a~~~~~~~~ 110 (115)
T 2cpz_A 101 LKRSKNDSKS 110 (115)
T ss_dssp CCCCSCCCCC
T ss_pred EcCCCCcCCC
Confidence 9998887654
No 42
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=8.6e-21 Score=145.99 Aligned_cols=90 Identities=24% Similarity=0.404 Sum_probs=84.9
Q ss_pred cCCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEE
Q 013840 345 EGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 424 (435)
Q Consensus 345 ~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~ 424 (435)
...+.++|||+|||..+|+++|+++|+.||+|.+|.|+.++.+|+++|||||+|.+.++|.+|++.|||..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34467999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EccCCcCCCC
Q 013840 425 LKRDNKQNKP 434 (435)
Q Consensus 425 ~a~~~~~~~~ 434 (435)
+++.+....|
T Consensus 91 ~a~~~~~~~~ 100 (103)
T 2cq0_A 91 WAKPSTNSGP 100 (103)
T ss_dssp ESSCCCCSCC
T ss_pred ECCCCCCCCC
Confidence 9999887665
No 43
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.85 E-value=1.2e-20 Score=139.08 Aligned_cols=82 Identities=37% Similarity=0.572 Sum_probs=79.0
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEccCC
Q 013840 350 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRDN 429 (435)
Q Consensus 350 ~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a~~~ 429 (435)
++|||+|||..+|+++|+++|+.||.|.++.|+.++.+|+++|||||+|.++++|.+|++.|||..++|++|+|++++.+
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 68999999999999999999999999999999999889999999999999999999999999999999999999999987
Q ss_pred cC
Q 013840 430 KQ 431 (435)
Q Consensus 430 ~~ 431 (435)
++
T Consensus 82 ~~ 83 (83)
T 3md1_A 82 EH 83 (83)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 44
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.85 E-value=2.1e-21 Score=145.74 Aligned_cols=81 Identities=17% Similarity=0.322 Sum_probs=76.2
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCc--EEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCc----eeCCeEE
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGR--VLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGC----QLGGKKL 421 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~--v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~----~l~gr~i 421 (435)
.-.||||+|||+.+|+++|+++|++||. |.+|+|++|+.+|+++|||||+|.++++|.+|++.|||. .++||+|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 4579999999999999999999999995 678999999999999999999999999999999999997 5999999
Q ss_pred EEEEccC
Q 013840 422 KVQLKRD 428 (435)
Q Consensus 422 ~v~~a~~ 428 (435)
+|+||++
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999986
No 45
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=3e-20 Score=142.10 Aligned_cols=86 Identities=23% Similarity=0.414 Sum_probs=81.5
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEE
Q 013840 346 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 425 (435)
Q Consensus 346 ~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~ 425 (435)
..+.++|||+|||..+|+++|+++|+.||+|.+|.|+.++ +|+++|||||+|.+.++|.+|++.|||..+.|++|+|.+
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3467899999999999999999999999999999999997 899999999999999999999999999999999999999
Q ss_pred ccCCcCC
Q 013840 426 KRDNKQN 432 (435)
Q Consensus 426 a~~~~~~ 432 (435)
++.+...
T Consensus 93 a~~~~~~ 99 (100)
T 2do4_A 93 SNSGPSS 99 (100)
T ss_dssp CCCCSCC
T ss_pred CCCCCCC
Confidence 9988754
No 46
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.4e-20 Score=141.33 Aligned_cols=84 Identities=21% Similarity=0.420 Sum_probs=79.8
Q ss_pred cCCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEE
Q 013840 345 EGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 424 (435)
Q Consensus 345 ~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~ 424 (435)
...+.++|||+|||..+|+++|+++|+.||.|.+|.|+.++.+++++|||||+|.+.++|.+|++.|||..+.|++|+|+
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34467999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred EccC
Q 013840 425 LKRD 428 (435)
Q Consensus 425 ~a~~ 428 (435)
++++
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9875
No 47
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.84 E-value=3.4e-20 Score=145.69 Aligned_cols=88 Identities=32% Similarity=0.530 Sum_probs=82.7
Q ss_pred cCCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEE
Q 013840 345 EGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 424 (435)
Q Consensus 345 ~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~ 424 (435)
...+.++|||+|||..+|+++|+++|+.||.|.+|.|+.++.+|.++|||||+|.+.++|.+|++.|||..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34467999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EccCCcCC
Q 013840 425 LKRDNKQN 432 (435)
Q Consensus 425 ~a~~~~~~ 432 (435)
|++.+...
T Consensus 91 ~a~~~~~~ 98 (115)
T 2dgo_A 91 WATRKPPA 98 (115)
T ss_dssp ESSCCCCC
T ss_pred EccCCCCC
Confidence 99887654
No 48
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.84 E-value=1.6e-20 Score=139.73 Aligned_cols=82 Identities=34% Similarity=0.558 Sum_probs=77.3
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 427 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a~ 427 (435)
+.++|||+|||..+|+++|+++|+.||.|.+|.|+.++.+|.++|||||+|.+.++|.+|++.|||..+.|++|+|++++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 56899999999999999999999999999999999998899999999999999999999999999999999999999998
Q ss_pred CC
Q 013840 428 DN 429 (435)
Q Consensus 428 ~~ 429 (435)
.+
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 76
No 49
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.84 E-value=1.5e-20 Score=147.45 Aligned_cols=83 Identities=35% Similarity=0.574 Sum_probs=76.5
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 427 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a~ 427 (435)
..++|||+|||.++|+++|+++|+.||.|.+|+|++++ +.++|||||+|.+.++|.+|++.|||..|+|++|+|.+++
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 35789999999999999999999999999999999984 5689999999999999999999999999999999999998
Q ss_pred CCcCC
Q 013840 428 DNKQN 432 (435)
Q Consensus 428 ~~~~~ 432 (435)
.+...
T Consensus 82 ~~~~~ 86 (115)
T 4f25_A 82 SRKER 86 (115)
T ss_dssp CCCC-
T ss_pred Ccccc
Confidence 87643
No 50
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=2.5e-20 Score=140.83 Aligned_cols=82 Identities=26% Similarity=0.457 Sum_probs=78.4
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEE
Q 013840 346 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 425 (435)
Q Consensus 346 ~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~ 425 (435)
.++.++|||+|||..+|+++|+++|+.||+|.+|.|+.++.+++++|||||+|.+.++|.+|++.|||..|.|++|+|+|
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 34678999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred cc
Q 013840 426 KR 427 (435)
Q Consensus 426 a~ 427 (435)
|+
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 86
No 51
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.2e-20 Score=144.88 Aligned_cols=89 Identities=26% Similarity=0.420 Sum_probs=83.4
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEE
Q 013840 346 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 425 (435)
Q Consensus 346 ~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~ 425 (435)
..+.++|||+|||..+|+++|+++|+.||+|.+|.|+.++.+++++|||||+|.+.++|.+|++.|||..|.|++|+|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 34679999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccCCcCCCC
Q 013840 426 KRDNKQNKP 434 (435)
Q Consensus 426 a~~~~~~~~ 434 (435)
++.+....+
T Consensus 89 a~~~~~~~~ 97 (102)
T 2cqb_A 89 AKPMRIKES 97 (102)
T ss_dssp CCCCCCCCC
T ss_pred CCCCCCCCC
Confidence 998876543
No 52
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=2e-20 Score=141.71 Aligned_cols=87 Identities=22% Similarity=0.471 Sum_probs=82.9
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 427 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a~ 427 (435)
++++|||+|||..+|+++|+++|+.||.|.+|.|+.++.+++++|||||+|.+.++|.+|++.|||..+.|++|+|.+++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 66899999999999999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred CCcCCCC
Q 013840 428 DNKQNKP 434 (435)
Q Consensus 428 ~~~~~~~ 434 (435)
.+..+.+
T Consensus 84 ~~~~~~~ 90 (95)
T 2dnz_A 84 ERLDGGS 90 (95)
T ss_dssp CCCCCCC
T ss_pred cccCCCC
Confidence 9876653
No 53
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.83 E-value=4.2e-20 Score=142.67 Aligned_cols=88 Identities=27% Similarity=0.419 Sum_probs=83.1
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCC---eEEE
Q 013840 346 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGG---KKLK 422 (435)
Q Consensus 346 ~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~g---r~i~ 422 (435)
.++.++|||+|||..+|+++|+++|+.||.|.+|.|+.++ +|+++|||||+|.+.++|.+|++.|||..+.| +.|+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 3467999999999999999999999999999999999997 89999999999999999999999999999998 9999
Q ss_pred EEEccCCcCCCC
Q 013840 423 VQLKRDNKQNKP 434 (435)
Q Consensus 423 v~~a~~~~~~~~ 434 (435)
|.+++.+....|
T Consensus 91 V~~a~~~~~~~~ 102 (105)
T 2dnh_A 91 VKFADTDKESGP 102 (105)
T ss_dssp EEESCSSCCCSC
T ss_pred EEECccCcccCC
Confidence 999999987765
No 54
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.83 E-value=2.2e-20 Score=138.33 Aligned_cols=81 Identities=28% Similarity=0.458 Sum_probs=78.0
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 013840 347 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 426 (435)
Q Consensus 347 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a 426 (435)
.+.++|||+|||..+|+++|+++|++||.|.+|.|+.++.+|+++|||||+|.+.++|.+|++.|||..+.|++|+|++|
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 36799999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred c
Q 013840 427 R 427 (435)
Q Consensus 427 ~ 427 (435)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 6
No 55
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.7e-20 Score=143.77 Aligned_cols=89 Identities=25% Similarity=0.383 Sum_probs=83.4
Q ss_pred cCCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEE
Q 013840 345 EGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 424 (435)
Q Consensus 345 ~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~ 424 (435)
.....++|||+|||..+|+++|+++|+.||.|.+|.|+.++.+++++|||||+|.+.++|.+|++.||+..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34467999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred EccCCcCCC
Q 013840 425 LKRDNKQNK 433 (435)
Q Consensus 425 ~a~~~~~~~ 433 (435)
+++.+....
T Consensus 91 ~a~~~~~~~ 99 (105)
T 1x5u_A 91 KASAHNKNL 99 (105)
T ss_dssp ETTTTSCCC
T ss_pred ECCCCCcCC
Confidence 999887653
No 56
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.83 E-value=1.5e-20 Score=155.16 Aligned_cols=78 Identities=26% Similarity=0.448 Sum_probs=73.8
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 427 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a~ 427 (435)
..++|||+|||..+|+++|+++|+.||.|.+|.|+.+ ++|||||+|.+.++|.+|+..|||..|.|++|+|++++
T Consensus 72 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 146 (150)
T 2i2y_A 72 LDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSN 146 (150)
T ss_dssp TSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcC
Confidence 5689999999999999999999999999999999866 58999999999999999999999999999999999998
Q ss_pred CCc
Q 013840 428 DNK 430 (435)
Q Consensus 428 ~~~ 430 (435)
.+.
T Consensus 147 ~~~ 149 (150)
T 2i2y_A 147 GEK 149 (150)
T ss_dssp CCC
T ss_pred CCC
Confidence 875
No 57
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=3.1e-20 Score=141.74 Aligned_cols=87 Identities=24% Similarity=0.374 Sum_probs=82.5
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 013840 347 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 426 (435)
Q Consensus 347 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a 426 (435)
.+.++|||+|||..+|+++|+++|+.||+|.+|.|+.++.+|+++|||||+|.+.++|.+|++.|||..|.|++|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 36789999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cCCcCCC
Q 013840 427 RDNKQNK 433 (435)
Q Consensus 427 ~~~~~~~ 433 (435)
+.+....
T Consensus 86 ~~~~~~~ 92 (99)
T 1whw_A 86 TIKKEAS 92 (99)
T ss_dssp CCCSTTC
T ss_pred CCCcccc
Confidence 9987643
No 58
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.5e-20 Score=144.42 Aligned_cols=88 Identities=26% Similarity=0.510 Sum_probs=82.9
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEE
Q 013840 346 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 425 (435)
Q Consensus 346 ~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~ 425 (435)
..+.++|||+|||..+|+++|+++|+.||+|.+|.|+.++.+++++|||||+|.++++|.+|++.||+..|.|++|+|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34679999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccCCcCCC
Q 013840 426 KRDNKQNK 433 (435)
Q Consensus 426 a~~~~~~~ 433 (435)
++.+...+
T Consensus 89 a~~~~~~~ 96 (102)
T 1x5s_A 89 AGKSSDNR 96 (102)
T ss_dssp EECCCCCC
T ss_pred CCCCCCCC
Confidence 99887654
No 59
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.83 E-value=5.4e-20 Score=145.29 Aligned_cols=84 Identities=65% Similarity=1.106 Sum_probs=79.0
Q ss_pred ccCCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEE
Q 013840 344 IEGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKV 423 (435)
Q Consensus 344 ~~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v 423 (435)
....+.++|||+|||.++|+++|+++|++||+|.+|.|++++.+|+++|||||+|.+.++|.+|++.|||..|+|++|+|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34457799999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EEcc
Q 013840 424 QLKR 427 (435)
Q Consensus 424 ~~a~ 427 (435)
+|+|
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 9985
No 60
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=3.5e-20 Score=141.41 Aligned_cols=86 Identities=26% Similarity=0.474 Sum_probs=81.3
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 013840 347 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 426 (435)
Q Consensus 347 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a 426 (435)
...++|||+|||..+|+++|+++|+.||.|.+|.|+.++.+|+++|||||+|.+.++|.+|++ ||+..|.|+.|+|.++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 367999999999999999999999999999999999998889999999999999999999999 8999999999999999
Q ss_pred cCCcCCC
Q 013840 427 RDNKQNK 433 (435)
Q Consensus 427 ~~~~~~~ 433 (435)
+.+....
T Consensus 87 ~~~~~~~ 93 (99)
T 2dgs_A 87 EPRDSKS 93 (99)
T ss_dssp CCCCCCC
T ss_pred CCCcccC
Confidence 9887654
No 61
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.83 E-value=9.2e-20 Score=140.16 Aligned_cols=85 Identities=24% Similarity=0.444 Sum_probs=80.2
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 013840 347 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 426 (435)
Q Consensus 347 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a 426 (435)
.+.++|||+|||..+|+++|+++|+.|| |.+|.|+.++.+|+++|||||+|.+.++|.+|+ .|||..|.|++|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEe
Confidence 3679999999999999999999999997 999999999888999999999999999999999 89999999999999999
Q ss_pred cCCcCCC
Q 013840 427 RDNKQNK 433 (435)
Q Consensus 427 ~~~~~~~ 433 (435)
+.+...+
T Consensus 91 ~~~~~~~ 97 (103)
T 2dng_A 91 EGRKQDK 97 (103)
T ss_dssp CCCCCCC
T ss_pred cCCCCCC
Confidence 9887654
No 62
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.83 E-value=2.3e-20 Score=141.51 Aligned_cols=85 Identities=25% Similarity=0.462 Sum_probs=80.6
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 427 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a~ 427 (435)
++++|||+|||..+|+++|+++|+.||.|.+|.|+.++.+|+++|||||+|.+.++|.+|++.|||..++|+.|+|++++
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 35799999999999999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred CCcCC
Q 013840 428 DNKQN 432 (435)
Q Consensus 428 ~~~~~ 432 (435)
.+...
T Consensus 81 ~~~~~ 85 (96)
T 2x1f_A 81 NSDIS 85 (96)
T ss_dssp CSSGG
T ss_pred CCCCC
Confidence 87643
No 63
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=5.9e-20 Score=141.29 Aligned_cols=87 Identities=34% Similarity=0.566 Sum_probs=81.5
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEE
Q 013840 346 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 425 (435)
Q Consensus 346 ~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~ 425 (435)
..+.++|||+|||..+|+++|+++|+.||+|.+|.|+.+ +|.++|||||+|.+.++|.+|++.|||..|.|++|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 346799999999999999999999999999999999988 799999999999999999999999999999999999999
Q ss_pred ccCCcCCCC
Q 013840 426 KRDNKQNKP 434 (435)
Q Consensus 426 a~~~~~~~~ 434 (435)
++.+....+
T Consensus 90 a~~~~~~~~ 98 (103)
T 2d9p_A 90 AQRKEERQS 98 (103)
T ss_dssp CSSCCCCCC
T ss_pred ecccccCCC
Confidence 998876543
No 64
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=6.3e-20 Score=143.27 Aligned_cols=88 Identities=26% Similarity=0.445 Sum_probs=83.0
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcC------CceeCCe
Q 013840 346 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMN------GCQLGGK 419 (435)
Q Consensus 346 ~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~------g~~l~gr 419 (435)
..+.++|||+|||..+|+++|+++|+.||+|.+|.|+.++.+|.++|||||+|.+.++|.+|+..|| +..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 3467899999999999999999999999999999999998889999999999999999999999999 9999999
Q ss_pred EEEEEEccCCcCCC
Q 013840 420 KLKVQLKRDNKQNK 433 (435)
Q Consensus 420 ~i~v~~a~~~~~~~ 433 (435)
+|+|.+++.+....
T Consensus 92 ~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 92 QLKVDLAVTRDEAA 105 (111)
T ss_dssp EEEEECCCCCCCCC
T ss_pred EEEEEECCCCccCC
Confidence 99999999887654
No 65
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=2.5e-20 Score=143.36 Aligned_cols=87 Identities=25% Similarity=0.404 Sum_probs=82.0
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 013840 347 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 426 (435)
Q Consensus 347 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a 426 (435)
.+.++|||+|||..+|+++|+++|+.||.|.+|.|+.++.+++++|||||+|.+.++|.+|++.|||..|.|+.|+|.++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 46799999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred cCCcCCC
Q 013840 427 RDNKQNK 433 (435)
Q Consensus 427 ~~~~~~~ 433 (435)
+.+....
T Consensus 91 ~~~~~~~ 97 (103)
T 2dnm_A 91 RYGRRDL 97 (103)
T ss_dssp SSCCSCC
T ss_pred CcCCCCC
Confidence 9876543
No 66
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=4.9e-20 Score=140.39 Aligned_cols=86 Identities=27% Similarity=0.459 Sum_probs=80.6
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCC---CCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEE
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKA---TGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 424 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~---~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~ 424 (435)
+.++|||+|||..+|+++|+++|+.||.|.+|.|+.++. +++++|||||+|.+.++|.+|++.|||..|.|++|+|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 568999999999999999999999999999999998875 55899999999999999999999999999999999999
Q ss_pred EccCCcCCC
Q 013840 425 LKRDNKQNK 433 (435)
Q Consensus 425 ~a~~~~~~~ 433 (435)
+++.+....
T Consensus 84 ~a~~~~~~~ 92 (98)
T 2cpf_A 84 ISERATKPA 92 (98)
T ss_dssp CSSCSSCCC
T ss_pred EccCCCCCC
Confidence 999887654
No 67
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.5e-20 Score=141.43 Aligned_cols=86 Identities=28% Similarity=0.463 Sum_probs=81.8
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCcEEEE-EEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSA-KVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 426 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v-~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a 426 (435)
++++|||+|||..+|+++|+++|+.||.|.++ .|+.++.+|.++|||||+|.+.++|.+|++.|||..+.|++|+|+++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 56899999999999999999999999999999 99999889999999999999999999999999999999999999999
Q ss_pred cCCcCCC
Q 013840 427 RDNKQNK 433 (435)
Q Consensus 427 ~~~~~~~ 433 (435)
+.+....
T Consensus 84 ~~~~~~~ 90 (96)
T 1x5t_A 84 FKKDSKG 90 (96)
T ss_dssp CCCCCCC
T ss_pred cccCCCC
Confidence 9887654
No 68
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.83 E-value=5.7e-20 Score=142.19 Aligned_cols=84 Identities=26% Similarity=0.529 Sum_probs=80.6
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 013840 347 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 426 (435)
Q Consensus 347 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a 426 (435)
++.++|||+|||..+|+++|+++|+.||.|.+|.|+.++.+|+++|||||+|.+.++|.+|++.|||..+.|++|+|+++
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 103 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV 103 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 36689999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cCCc
Q 013840 427 RDNK 430 (435)
Q Consensus 427 ~~~~ 430 (435)
+.+.
T Consensus 104 ~~k~ 107 (108)
T 2jrs_A 104 TERT 107 (108)
T ss_dssp CSSC
T ss_pred ccCC
Confidence 8875
No 69
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.83 E-value=5.7e-21 Score=142.94 Aligned_cols=85 Identities=25% Similarity=0.369 Sum_probs=73.0
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcCC--cEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 013840 350 ANLFIYHIPQEFGDQELGNAFQAFG--RVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 427 (435)
Q Consensus 350 ~~v~V~nLp~~~t~~~L~~~F~~fG--~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a~ 427 (435)
.+|||+|||..+|+++|+++|+.|| .|.+|+|+.++.+|+++|||||+|.+.++|.+|++.|||..+.||+|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 99999999998899999999999999999999999999999999999999999
Q ss_pred CCcCCCC
Q 013840 428 DNKQNKP 434 (435)
Q Consensus 428 ~~~~~~~ 434 (435)
.+....|
T Consensus 82 ~~~~~~~ 88 (90)
T 3p5t_L 82 KLEHHHH 88 (90)
T ss_dssp -------
T ss_pred CCccccC
Confidence 8876544
No 70
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.82 E-value=3.2e-19 Score=145.17 Aligned_cols=89 Identities=34% Similarity=0.497 Sum_probs=83.6
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEE
Q 013840 346 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 425 (435)
Q Consensus 346 ~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~ 425 (435)
....++|||+|||.++|+++|+++|+.||+|.+|.|+.++.+|+++|||||+|.+.++|.+|++.|||..|.|+.|+|++
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34679999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred ccCCcCCCC
Q 013840 426 KRDNKQNKP 434 (435)
Q Consensus 426 a~~~~~~~~ 434 (435)
++.+.....
T Consensus 119 a~~~~~~~~ 127 (139)
T 1u6f_A 119 AASGHQRPG 127 (139)
T ss_dssp SSCCCCCCC
T ss_pred CCCCCCCCC
Confidence 998876543
No 71
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.82 E-value=2e-20 Score=146.68 Aligned_cols=102 Identities=18% Similarity=0.269 Sum_probs=71.6
Q ss_pred cCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCceee
Q 013840 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 91 (435)
Q Consensus 12 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~~ 91 (435)
..+++|||+|||+++|+++|+++|+.||.|.+|+++.++ +.++|||||+|.+.++|++||+.|++.. +.| +.|.+
T Consensus 3 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~-~~g--~~i~V 77 (115)
T 4f25_A 3 LGSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGML-LND--RKVFV 77 (115)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCE-ETT--EECEE
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCE-ECC--EEEEE
Confidence 346789999999999999999999999999999999986 4589999999999999999999999986 444 88888
Q ss_pred eccCchhccc---------cceEEEecCCCCCCHHH
Q 013840 92 KYADGELERL---------EHKLFIGMLPKNVSEAE 118 (435)
Q Consensus 92 ~~~~~~~~~~---------~~~l~v~~lp~~~t~~~ 118 (435)
.++.....+. ..+|||+|||+++|++.
T Consensus 78 ~~a~~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 78 GRFKSRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp EESSCCCC----------------------------
T ss_pred EECCCccccccccccccCCCCceEeCCCCCCccccc
Confidence 8876543322 35799999999998863
No 72
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=9.2e-20 Score=143.43 Aligned_cols=88 Identities=27% Similarity=0.417 Sum_probs=81.2
Q ss_pred cCCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEE
Q 013840 345 EGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 424 (435)
Q Consensus 345 ~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~ 424 (435)
.....++|||+|||..+|+++|+++|+.||+|.+|.|+.++.+++++|||||+|.+.++|.+|++.||+ .|.|++|+|+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 344679999999999999999999999999999999999988899999999999999999999999998 8999999999
Q ss_pred EccCCcCCC
Q 013840 425 LKRDNKQNK 433 (435)
Q Consensus 425 ~a~~~~~~~ 433 (435)
+++.+...+
T Consensus 92 ~a~~~~~~~ 100 (116)
T 2cqd_A 92 LAYLGAKPR 100 (116)
T ss_dssp ESTTTCCCC
T ss_pred EcccCCCcc
Confidence 997765443
No 73
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=6.5e-20 Score=142.15 Aligned_cols=88 Identities=19% Similarity=0.425 Sum_probs=82.3
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEee-CCCCCcceEEEEEeCCHHHHHHHHHhc-CCceeCCeEEEE
Q 013840 346 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVD-KATGVSKCFGFVSYESPASAQNAIAMM-NGCQLGGKKLKV 423 (435)
Q Consensus 346 ~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~-~~~g~~~g~afV~F~~~~~A~~A~~~l-~g~~l~gr~i~v 423 (435)
....++|||+|||..+|+++|+++|+.||.|.+|.|+.+ +.+|.++|||||+|.+.++|.+|++.| |+..|.|++|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 346799999999999999999999999999999999988 778999999999999999999999999 999999999999
Q ss_pred EEccCCcCCC
Q 013840 424 QLKRDNKQNK 433 (435)
Q Consensus 424 ~~a~~~~~~~ 433 (435)
.+++.+....
T Consensus 92 ~~a~~~~~~~ 101 (107)
T 2cph_A 92 EWADSEVTVQ 101 (107)
T ss_dssp EECCCCCCCC
T ss_pred EeCCCCCCCC
Confidence 9999877543
No 74
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=6.4e-20 Score=141.91 Aligned_cols=85 Identities=25% Similarity=0.392 Sum_probs=80.9
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 013840 347 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 426 (435)
Q Consensus 347 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a 426 (435)
.++++|||+|||..+|+++|+++|+.||+|.+|.|+.++.+|.++|||||+|.+.++|.+|+..|||..+.|+.|+|.++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 35689999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred cCCcC
Q 013840 427 RDNKQ 431 (435)
Q Consensus 427 ~~~~~ 431 (435)
+.+..
T Consensus 101 ~~~~~ 105 (106)
T 1p27_B 101 FVRGP 105 (106)
T ss_dssp EESSC
T ss_pred cCCCC
Confidence 88753
No 75
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.82 E-value=6.7e-20 Score=139.83 Aligned_cols=81 Identities=22% Similarity=0.440 Sum_probs=77.8
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCcEEE--------EEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCC
Q 013840 347 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLS--------AKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGG 418 (435)
Q Consensus 347 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~--------v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~g 418 (435)
+..++|||+|||.++|+++|+++|++||.|.+ +.|+.++.+|+++|||||+|.+.++|.+|++.|||..+.|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 36799999999999999999999999999999 9999998899999999999999999999999999999999
Q ss_pred eEEEEEEcc
Q 013840 419 KKLKVQLKR 427 (435)
Q Consensus 419 r~i~v~~a~ 427 (435)
++|+|++|+
T Consensus 91 ~~l~V~~A~ 99 (99)
T 2la6_A 91 NPIKVSFAT 99 (99)
T ss_dssp SBCEEEECC
T ss_pred cEEEEEecC
Confidence 999999985
No 76
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.82 E-value=3.9e-20 Score=143.15 Aligned_cols=88 Identities=23% Similarity=0.417 Sum_probs=82.3
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCcee---CCeEEE
Q 013840 346 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQL---GGKKLK 422 (435)
Q Consensus 346 ~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l---~gr~i~ 422 (435)
..+.++|||+|||..+|+++|+++|+.||+|.+|.|+.++.+|+++|||||+|.+.++|.+|++.||+..+ .|++|+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 34679999999999999999999999999999999999988899999999999999999999999999998 899999
Q ss_pred EEEccCCcCCC
Q 013840 423 VQLKRDNKQNK 433 (435)
Q Consensus 423 v~~a~~~~~~~ 433 (435)
|.+++.+..+.
T Consensus 90 v~~a~~~~~~~ 100 (106)
T 2dgp_A 90 VKPADSESRGG 100 (106)
T ss_dssp EEECCCCSCCC
T ss_pred EEECCcccccC
Confidence 99999877654
No 77
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.82 E-value=5.6e-20 Score=143.22 Aligned_cols=86 Identities=26% Similarity=0.417 Sum_probs=81.9
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 013840 347 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 426 (435)
Q Consensus 347 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a 426 (435)
.+.++|||+|||..+|+++|+++|+.||.|.+|.|+.++.+|.++|||||+|.+.++|.+|+..|||..|.|++|+|.++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 36789999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cCCcCC
Q 013840 427 RDNKQN 432 (435)
Q Consensus 427 ~~~~~~ 432 (435)
+.+..+
T Consensus 104 ~~~~~~ 109 (110)
T 1oo0_B 104 FVKGPK 109 (110)
T ss_dssp EESSCC
T ss_pred ccCCCC
Confidence 988754
No 78
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=6e-20 Score=139.88 Aligned_cols=85 Identities=18% Similarity=0.271 Sum_probs=79.9
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 013840 347 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 426 (435)
Q Consensus 347 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a 426 (435)
...++|||+|||..+|+++|+++|+.||.|..+.++.++.+|+++|||||+|.+.++|.+|++.|||..|.|++|+|+++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 35689999999999999999999999999999988888889999999999999999999999999999999999999999
Q ss_pred cCCcC
Q 013840 427 RDNKQ 431 (435)
Q Consensus 427 ~~~~~ 431 (435)
+.+..
T Consensus 93 ~~~~s 97 (98)
T 2cqp_A 93 SGPSS 97 (98)
T ss_dssp SCSSC
T ss_pred CCCCC
Confidence 87653
No 79
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.9e-19 Score=138.39 Aligned_cols=87 Identities=21% Similarity=0.344 Sum_probs=79.6
Q ss_pred cCCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEE
Q 013840 345 EGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 424 (435)
Q Consensus 345 ~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~ 424 (435)
.....++|||+|||..+|+++|+++|+.||.|.+|.|+.++ +.++|||||+|.+.++|.+|++.||+..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEH--TSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCC--CSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecC--CCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 33467999999999999999999999999999999999885 3478999999999999999999999999999999999
Q ss_pred EccCCcCCC
Q 013840 425 LKRDNKQNK 433 (435)
Q Consensus 425 ~a~~~~~~~ 433 (435)
|++.+...+
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2cqi_A 89 WATTPSSQK 97 (103)
T ss_dssp ECCCTTCCC
T ss_pred ECCCCcccc
Confidence 999877654
No 80
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.1e-19 Score=139.89 Aligned_cols=85 Identities=18% Similarity=0.405 Sum_probs=79.8
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCC-CCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEE
Q 013840 347 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKAT-GVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 425 (435)
Q Consensus 347 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~-g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~ 425 (435)
.+.++|||+|||..+|+++|+++|+.|| |.+|.|+.++.+ |+++|||||+|.+.++|.+|+ .||+..|.|+.|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 3669999999999999999999999999 999999999877 999999999999999999999 8999999999999999
Q ss_pred ccCCcCCC
Q 013840 426 KRDNKQNK 433 (435)
Q Consensus 426 a~~~~~~~ 433 (435)
++.+....
T Consensus 91 a~~~~~~~ 98 (104)
T 1wi8_A 91 ADQAQDKD 98 (104)
T ss_dssp CCCCCCCC
T ss_pred ccCCCCCC
Confidence 99887553
No 81
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=2.7e-19 Score=140.29 Aligned_cols=86 Identities=28% Similarity=0.463 Sum_probs=79.7
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEE
Q 013840 346 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 425 (435)
Q Consensus 346 ~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~ 425 (435)
....++|||+|||..+|+++|+++|+.||.|.+|.|+.++ +|+++|||||+|.+.++|.+|++.||+..|.|+.|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 3467899999999999999999999999999999999997 699999999999999999999999999999999999999
Q ss_pred ccCCcCC
Q 013840 426 KRDNKQN 432 (435)
Q Consensus 426 a~~~~~~ 432 (435)
++.....
T Consensus 91 a~~~~~~ 97 (114)
T 2do0_A 91 DERALPK 97 (114)
T ss_dssp CSCCCCC
T ss_pred cccCCCC
Confidence 9865433
No 82
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.82 E-value=6.7e-20 Score=137.17 Aligned_cols=79 Identities=23% Similarity=0.282 Sum_probs=72.6
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCce--eCCeEEEE
Q 013840 346 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQ--LGGKKLKV 423 (435)
Q Consensus 346 ~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~--l~gr~i~v 423 (435)
.+++++|||+|||+++|+++|+++|++||.|.+|.++++ +|+|||+|.+.++|.+|+..|++.. +.||+|+|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 347799999999999999999999999999999999753 6899999999999999999999875 78999999
Q ss_pred EEccCCc
Q 013840 424 QLKRDNK 430 (435)
Q Consensus 424 ~~a~~~~ 430 (435)
+|++.+.
T Consensus 92 ~~S~~k~ 98 (100)
T 3r27_A 92 NYSTSQK 98 (100)
T ss_dssp EECSCSC
T ss_pred Eeccccc
Confidence 9998874
No 83
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.82 E-value=9.8e-21 Score=144.47 Aligned_cols=83 Identities=24% Similarity=0.319 Sum_probs=79.2
Q ss_pred CCceEEEeCCCC------CCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCC-eE
Q 013840 348 PGANLFIYHIPQ------EFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGG-KK 420 (435)
Q Consensus 348 ~~~~v~V~nLp~------~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~g-r~ 420 (435)
.+++|||+|||. ++++++|+++|++||.|.+|.|++++.+|+++|||||+|.++++|.+|++.|||..|.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 468999999999 99999999999999999999999999889999999999999999999999999999999 99
Q ss_pred EEEEEccCCc
Q 013840 421 LKVQLKRDNK 430 (435)
Q Consensus 421 i~v~~a~~~~ 430 (435)
|+|.+++++.
T Consensus 85 l~V~~a~~~~ 94 (100)
T 3ns6_A 85 LFLYTMKDVE 94 (100)
T ss_dssp CEEEESHHHH
T ss_pred EEEEECchhh
Confidence 9999998654
No 84
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=7.9e-20 Score=143.11 Aligned_cols=89 Identities=28% Similarity=0.464 Sum_probs=82.8
Q ss_pred cCCCCceEEEeCCCCCCCHHHHHHHhhcCCcEE--------EEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCcee
Q 013840 345 EGPPGANLFIYHIPQEFGDQELGNAFQAFGRVL--------SAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQL 416 (435)
Q Consensus 345 ~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~--------~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l 416 (435)
.....++|||+|||..+|+++|+++|+.||.|. .|.|+.++.+|+++|||||+|.+.++|.+|++.|||..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 344679999999999999999999999999999 699999988999999999999999999999999999999
Q ss_pred CCeEEEEEEccCCcCCC
Q 013840 417 GGKKLKVQLKRDNKQNK 433 (435)
Q Consensus 417 ~gr~i~v~~a~~~~~~~ 433 (435)
.|+.|+|.+++.+....
T Consensus 91 ~g~~l~V~~a~~~~~~~ 107 (113)
T 2cpe_A 91 QGSKLKVSLARKKPPMN 107 (113)
T ss_dssp TTEECEEECSSCCCCST
T ss_pred CCCEEEEEECCCCCCCC
Confidence 99999999999887543
No 85
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.81 E-value=4.8e-20 Score=147.27 Aligned_cols=87 Identities=21% Similarity=0.437 Sum_probs=82.1
Q ss_pred cCCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEE
Q 013840 345 EGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 424 (435)
Q Consensus 345 ~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~ 424 (435)
...+.++|||+|||..+|+++|+++|+.||+|.+|.|+.++.+|+++|||||+|.+.++|.+|++.|||..|.|++|+|+
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred EccCCcC
Q 013840 425 LKRDNKQ 431 (435)
Q Consensus 425 ~a~~~~~ 431 (435)
|++.+..
T Consensus 122 ~a~~~~p 128 (129)
T 2kxn_B 122 FSITKRP 128 (129)
T ss_dssp CCSSSSC
T ss_pred EecCCCC
Confidence 9988763
No 86
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.81 E-value=9.3e-20 Score=138.00 Aligned_cols=81 Identities=26% Similarity=0.466 Sum_probs=77.3
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 013840 347 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 426 (435)
Q Consensus 347 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a 426 (435)
...++|||+|||..+|+++|+++|+.||+|.+|.|+.++ +|+++|||||+|.++++|.+|++.|||..+.|++|+|+++
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 366999999999999999999999999999999999997 5999999999999999999999999999999999999998
Q ss_pred cC
Q 013840 427 RD 428 (435)
Q Consensus 427 ~~ 428 (435)
++
T Consensus 93 ~~ 94 (95)
T 2ywk_A 93 SS 94 (95)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 87
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=3.7e-19 Score=136.77 Aligned_cols=87 Identities=28% Similarity=0.512 Sum_probs=79.6
Q ss_pred cCCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEE
Q 013840 345 EGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 424 (435)
Q Consensus 345 ~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~ 424 (435)
.....++|||+|||..+|+++|+++|+.||.|.+|.|+.++ +.++|||||+|.+.++|.+|++.|||..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCT--TTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC--CCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34467999999999999999999999999999999999885 3489999999999999999999999999999999999
Q ss_pred EccCCcCCC
Q 013840 425 LKRDNKQNK 433 (435)
Q Consensus 425 ~a~~~~~~~ 433 (435)
+++.+....
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2cq3_A 89 NATARVMTN 97 (103)
T ss_dssp ECCSSCCCC
T ss_pred EcccCCCCC
Confidence 999887543
No 88
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.4e-19 Score=137.12 Aligned_cols=84 Identities=23% Similarity=0.309 Sum_probs=77.9
Q ss_pred CCceEEEeCCCCCCCHHHHH----HHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEE
Q 013840 348 PGANLFIYHIPQEFGDQELG----NAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKV 423 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~----~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v 423 (435)
+.++|||+|||..+|+++|+ ++|++||+|.+|.|+.++.+ +|||||+|.+.++|.+|++.|||..+.|++|+|
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 56899999999999999999 99999999999999988644 899999999999999999999999999999999
Q ss_pred EEccCCcCCCC
Q 013840 424 QLKRDNKQNKP 434 (435)
Q Consensus 424 ~~a~~~~~~~~ 434 (435)
++++.+....|
T Consensus 85 ~~a~~~~~~~~ 95 (96)
T 2dgx_A 85 SLATGASGPSS 95 (96)
T ss_dssp EECCCSSCCCC
T ss_pred EEcCCCCCCCC
Confidence 99998876543
No 89
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.1e-19 Score=138.81 Aligned_cols=84 Identities=21% Similarity=0.410 Sum_probs=80.2
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCcEE-EEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeE----EE
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGRVL-SAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKK----LK 422 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~-~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~----i~ 422 (435)
..++|||+|||..+|+++|+++|+.||.|. +|.|++++.+|+++|||||+|.+.++|.+|++.|||..+.|+. |+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~ 87 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFK 87 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEE
Confidence 679999999999999999999999999999 9999999889999999999999999999999999999999999 99
Q ss_pred EEEccCCcC
Q 013840 423 VQLKRDNKQ 431 (435)
Q Consensus 423 v~~a~~~~~ 431 (435)
|.|++....
T Consensus 88 v~~a~~~~~ 96 (99)
T 2div_A 88 LNYATYSGP 96 (99)
T ss_dssp EEETTCCSS
T ss_pred EeecCCCCC
Confidence 999987653
No 90
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.81 E-value=1.9e-19 Score=134.44 Aligned_cols=83 Identities=20% Similarity=0.433 Sum_probs=78.6
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 427 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a~ 427 (435)
..++|||+|||..+|+++|+++|+.||.|.++.|+.++.+|+++|||||+|.+.++|.+|+ .|||..+.|++|+|.+++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 3589999999999999999999999999999999999889999999999999999999999 899999999999999998
Q ss_pred CCcC
Q 013840 428 DNKQ 431 (435)
Q Consensus 428 ~~~~ 431 (435)
.+..
T Consensus 84 ~~~p 87 (89)
T 3ucg_A 84 TNRP 87 (89)
T ss_dssp TTSC
T ss_pred CCCC
Confidence 8653
No 91
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.1e-19 Score=140.15 Aligned_cols=86 Identities=26% Similarity=0.437 Sum_probs=81.0
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhc-CCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCce-eCCeEEEEE
Q 013840 347 PPGANLFIYHIPQEFGDQELGNAFQA-FGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQ-LGGKKLKVQ 424 (435)
Q Consensus 347 ~~~~~v~V~nLp~~~t~~~L~~~F~~-fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~-l~gr~i~v~ 424 (435)
.+.++|||+|||..+|+++|+++|+. ||.|.+|.|+.++ +|+++|||||+|.+.++|.+|++.|||.. +.|++|+|.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 46789999999999999999999999 9999999999998 99999999999999999999999999999 999999999
Q ss_pred EccCCcCCC
Q 013840 425 LKRDNKQNK 433 (435)
Q Consensus 425 ~a~~~~~~~ 433 (435)
+++.+...+
T Consensus 86 ~a~~~~~~~ 94 (104)
T 2dhg_A 86 VAIPKASRV 94 (104)
T ss_dssp BCCCCCSCC
T ss_pred EccCCCcCC
Confidence 998776543
No 92
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.3e-19 Score=139.85 Aligned_cols=87 Identities=21% Similarity=0.359 Sum_probs=81.9
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEE
Q 013840 346 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 425 (435)
Q Consensus 346 ~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~ 425 (435)
..+.++|||+|||..+|+++|+++|+.||+|.+|.|+.++.+|+++|||||+|.+.++|.+|++. |+..|.|+.|+|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 34679999999999999999999999999999999999988999999999999999999999999 99999999999999
Q ss_pred ccCCcCCC
Q 013840 426 KRDNKQNK 433 (435)
Q Consensus 426 a~~~~~~~ 433 (435)
++.+....
T Consensus 92 a~~~~~~~ 99 (105)
T 2dh8_A 92 CTPRGMQP 99 (105)
T ss_dssp SCCSSCCT
T ss_pred ccCCCCCC
Confidence 99887554
No 93
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.81 E-value=1.6e-19 Score=134.58 Aligned_cols=83 Identities=18% Similarity=0.374 Sum_probs=77.9
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCC-cceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGV-SKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 426 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~-~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a 426 (435)
..++|||+|||.++|+++|+++|+.||.|.++.|+.++.++. ++|||||+|.+.++|.+|++.|||..++|+.|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 468999999999999999999999999999999999876655 8999999999999999999999999999999999999
Q ss_pred cCCc
Q 013840 427 RDNK 430 (435)
Q Consensus 427 ~~~~ 430 (435)
+...
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8765
No 94
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.81 E-value=1.2e-19 Score=130.38 Aligned_cols=74 Identities=14% Similarity=0.275 Sum_probs=69.9
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 427 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a~ 427 (435)
.+.-|||+||+..+|+++|+++|.+||+|.++++.. ++|||||+|.++++|.+|++.||+..|.||.|+|++|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 457899999999999999999999999999999964 58999999999999999999999999999999999985
No 95
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.81 E-value=1.3e-19 Score=150.92 Aligned_cols=137 Identities=20% Similarity=0.303 Sum_probs=106.0
Q ss_pred EEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCC----CCceeeecc-------CchhccccceEEEecCC
Q 013840 43 EVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGA----SSPLQVKYA-------DGELERLEHKLFIGMLP 111 (435)
Q Consensus 43 ~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~----~~~i~~~~~-------~~~~~~~~~~l~v~~lp 111 (435)
.++++.+. .+++|||||+|.+.++|++|++.+++.....+. ......... .........+|||+|||
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 36677776 368999999999999999999888754322221 011111100 11112235799999999
Q ss_pred CCCCHHHHHHhhhccCCeeEEEEecCC-CCCcccEEEEEeCCHHHHHHHHHHHcCCCcCCCCcceEEEEecCCH
Q 013840 112 KNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 184 (435)
Q Consensus 112 ~~~t~~~l~~~f~~~g~i~~v~~~~~~-~~~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~a~~~ 184 (435)
+++++++|+++|+.||.|..|.+..+. +|.++|||||+|.+.++|.+|++.|||.. +.|+. |.|.++.+.
T Consensus 80 ~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g~~--l~v~~a~~~ 150 (158)
T 2kn4_A 80 YRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAV-LDGRE--LRVQMARYG 150 (158)
T ss_dssp TTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEE-SSSSE--EEEEEECCS
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCE-ECCeE--EEEEECCCC
Confidence 999999999999999999999999885 78999999999999999999999999976 77775 778777664
No 96
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=4.4e-19 Score=137.82 Aligned_cols=86 Identities=19% Similarity=0.454 Sum_probs=78.4
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEE
Q 013840 346 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 425 (435)
Q Consensus 346 ~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~ 425 (435)
....++|||+|||..+|+++|+++|+.||.|.+|.|.. ++.++|||||+|.+.++|.+|++.||+..|.|++|+|++
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC---SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34679999999999999999999999999999999954 356899999999999999999999999999999999999
Q ss_pred ccCCcCCCC
Q 013840 426 KRDNKQNKP 434 (435)
Q Consensus 426 a~~~~~~~~ 434 (435)
++.+....+
T Consensus 96 a~~~~~~~~ 104 (109)
T 1x4a_A 96 PRSGRGTGS 104 (109)
T ss_dssp CCCCCCCCC
T ss_pred cccCCCCCC
Confidence 998876543
No 97
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.80 E-value=1.7e-19 Score=139.84 Aligned_cols=87 Identities=24% Similarity=0.388 Sum_probs=78.8
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEE
Q 013840 346 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 425 (435)
Q Consensus 346 ~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~ 425 (435)
..+.++|||+|||..+|+++|+++|+.||+|.+|.|+.++.+|+++|||||+|.+.++|.+|++.+ +..|+|+.|+|.+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEE
Confidence 346799999999999999999999999999999999999888999999999999999999999986 5999999999999
Q ss_pred ccCCcCCC
Q 013840 426 KRDNKQNK 433 (435)
Q Consensus 426 a~~~~~~~ 433 (435)
++.+...+
T Consensus 101 a~~~~~~~ 108 (109)
T 2rs2_A 101 AFPRRAQP 108 (109)
T ss_dssp CCCCCCCC
T ss_pred ccCCCCCC
Confidence 99887654
No 98
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.80 E-value=1.5e-19 Score=141.71 Aligned_cols=85 Identities=31% Similarity=0.469 Sum_probs=80.3
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 013840 347 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 426 (435)
Q Consensus 347 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a 426 (435)
...++|||+|||.++|+++|+++|+.||.|.+|.|+.++ +|+++|||||+|.+.++|.+|++.|||..|.|+.|+|.++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 356899999999999999999999999999999999997 8999999999999999999999999999999999999999
Q ss_pred cCCcCC
Q 013840 427 RDNKQN 432 (435)
Q Consensus 427 ~~~~~~ 432 (435)
+.+...
T Consensus 84 ~~~~~~ 89 (116)
T 2fy1_A 84 KKPSFQ 89 (116)
T ss_dssp CCSSCS
T ss_pred CCCCCC
Confidence 877643
No 99
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=9.3e-20 Score=137.88 Aligned_cols=80 Identities=16% Similarity=0.278 Sum_probs=73.4
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcC--CceeCCeEEEEE
Q 013840 347 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMN--GCQLGGKKLKVQ 424 (435)
Q Consensus 347 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~--g~~l~gr~i~v~ 424 (435)
.+.++|||+|||+++|+++|+++|+.||+|.+|.|+++ +|||||+|.+.++|.+|++.|+ +..|.||+|+|.
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 36789999999999999999999999999999999865 6899999999999999999886 478999999999
Q ss_pred EccCCcCC
Q 013840 425 LKRDNKQN 432 (435)
Q Consensus 425 ~a~~~~~~ 432 (435)
|++.+...
T Consensus 88 ~A~~~~~~ 95 (105)
T 1sjq_A 88 FSNHKELK 95 (105)
T ss_dssp CCSSSSCC
T ss_pred EcCCCCCC
Confidence 99987654
No 100
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.80 E-value=4.1e-20 Score=148.57 Aligned_cols=85 Identities=15% Similarity=0.352 Sum_probs=80.1
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCcEEE--EEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCc----eeCCeE
Q 013840 347 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLS--AKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGC----QLGGKK 420 (435)
Q Consensus 347 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~--v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~----~l~gr~ 420 (435)
...++|||+|||..+|+++|+++|+.||.|.. |+|++++.+|+++|||||+|.+. +|.+|+..|||. .+.||+
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 46789999999999999999999999999977 99999988999999999999999 999999999999 999999
Q ss_pred EEEEEccCCcCC
Q 013840 421 LKVQLKRDNKQN 432 (435)
Q Consensus 421 i~v~~a~~~~~~ 432 (435)
|+|++++.+..+
T Consensus 100 l~V~~a~~~~~~ 111 (131)
T 2m2b_A 100 INVEFAKGSKRD 111 (131)
T ss_dssp CCCEECCCSCCC
T ss_pred EEEEECCCCCCC
Confidence 999999887543
No 101
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=8.7e-19 Score=134.70 Aligned_cols=85 Identities=25% Similarity=0.412 Sum_probs=79.2
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEE
Q 013840 346 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 425 (435)
Q Consensus 346 ~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~ 425 (435)
..+.++|||+|||..+|+++|+++|+.||.|.+|.|+.++.+|+++|||||+|.+.++|.+|+. ++..|.|++|+|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 3467899999999999999999999999999999999998889999999999999999999999 47899999999999
Q ss_pred ccCCcCC
Q 013840 426 KRDNKQN 432 (435)
Q Consensus 426 a~~~~~~ 432 (435)
++.+...
T Consensus 90 a~~~~~~ 96 (103)
T 2cqg_A 90 PNSKQSQ 96 (103)
T ss_dssp CCTTCCC
T ss_pred cCCCCcC
Confidence 9988654
No 102
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.80 E-value=4e-19 Score=132.07 Aligned_cols=79 Identities=22% Similarity=0.461 Sum_probs=74.9
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 013840 347 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 426 (435)
Q Consensus 347 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a 426 (435)
.+.++|||+|||..+|+++|+++|+.||.|.+|.|+.++.+|+++|||||+|.+.++|.+|++. ++..|.|++|+|++|
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHRLDGRVIDPKKA 87 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCEECCEEEEEEeC
Confidence 4678999999999999999999999999999999999988899999999999999999999975 888999999999986
No 103
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.80 E-value=3.9e-19 Score=137.68 Aligned_cols=81 Identities=27% Similarity=0.443 Sum_probs=77.6
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 013840 347 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 426 (435)
Q Consensus 347 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a 426 (435)
.+.++|||+|||..+|+++|+++|+.||.|.+|.|+.++ +|+++|||||+|.+.++|.+|++.|||..|.|+.|+|+++
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 367999999999999999999999999999999999997 9999999999999999999999999999999999999998
Q ss_pred cC
Q 013840 427 RD 428 (435)
Q Consensus 427 ~~ 428 (435)
.+
T Consensus 106 ~s 107 (107)
T 3ulh_A 106 TS 107 (107)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 104
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.80 E-value=7.9e-20 Score=138.37 Aligned_cols=81 Identities=16% Similarity=0.234 Sum_probs=76.4
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 427 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a~ 427 (435)
..++|||+|||..+|+++|+++|+.||.|..+.++.++.+|+++|||||+|.++++|.+|++.||+..|.|++|+|+++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 56899999999999999999999999999999999988899999999999999999999999999999999999999986
Q ss_pred C
Q 013840 428 D 428 (435)
Q Consensus 428 ~ 428 (435)
+
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 4
No 105
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.80 E-value=2.6e-19 Score=134.64 Aligned_cols=83 Identities=33% Similarity=0.587 Sum_probs=78.6
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 427 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a~ 427 (435)
+.++|||+|||..+|+++|+++|+.||.|.+|.|+.+ +|+++|||||+|.+.++|.+|++.|||..+.|++|+|++++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 6689999999999999999999999999999999874 79999999999999999999999999999999999999999
Q ss_pred CCcCC
Q 013840 428 DNKQN 432 (435)
Q Consensus 428 ~~~~~ 432 (435)
.+...
T Consensus 85 ~~~~~ 89 (92)
T 2dgv_A 85 NASGP 89 (92)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 87654
No 106
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=2.6e-19 Score=136.74 Aligned_cols=83 Identities=13% Similarity=0.236 Sum_probs=74.2
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCc--eeCCeEEEE
Q 013840 346 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGC--QLGGKKLKV 423 (435)
Q Consensus 346 ~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~--~l~gr~i~v 423 (435)
.++.++|||+|||.++|+++|+++|++||.|.+|.|+++ +|||||+|.+.++|.+|++.|++. .+.|++|+|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 346789999999999999999999999999999998754 689999999999999999998765 599999999
Q ss_pred EEccCCcCCCC
Q 013840 424 QLKRDNKQNKP 434 (435)
Q Consensus 424 ~~a~~~~~~~~ 434 (435)
.|++.+...+|
T Consensus 86 ~~a~~~~~~~~ 96 (104)
T 1wex_A 86 NYSTSKRITRP 96 (104)
T ss_dssp EECSSSSCCCS
T ss_pred EEccCccccCC
Confidence 99998876544
No 107
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.80 E-value=2.5e-19 Score=136.07 Aligned_cols=85 Identities=25% Similarity=0.420 Sum_probs=76.4
Q ss_pred cCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCc
Q 013840 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (435)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~ 88 (435)
.-.-+.++|||+|||+++|+++|+++|+.||.|.+++++.|+.++.++|||||+|.+.++|++|++.||+..+ .| +.
T Consensus 14 n~~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~-~g--r~ 90 (99)
T 4fxv_A 14 NLYFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRL-QS--KT 90 (99)
T ss_dssp --CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEE-TT--EE
T ss_pred cccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEE-CC--EE
Confidence 3345678999999999999999999999999999999999999999999999999999999999999999864 44 88
Q ss_pred eeeeccCc
Q 013840 89 LQVKYADG 96 (435)
Q Consensus 89 i~~~~~~~ 96 (435)
|++.++.|
T Consensus 91 l~V~~AkP 98 (99)
T 4fxv_A 91 IKVSYARP 98 (99)
T ss_dssp CEEEECCB
T ss_pred EEEEEeeC
Confidence 99998865
No 108
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=6.2e-19 Score=132.20 Aligned_cols=82 Identities=12% Similarity=0.270 Sum_probs=77.9
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 427 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a~ 427 (435)
..++|||+|||..+|+++|+++|+.| .|.+|.|+.+ .+|+++|||||+|.+.++|.+|+. |||..|+|+.|+|.+++
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEES
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECC
Confidence 56899999999999999999999999 9999999999 689999999999999999999999 99999999999999999
Q ss_pred CCcCC
Q 013840 428 DNKQN 432 (435)
Q Consensus 428 ~~~~~ 432 (435)
.+...
T Consensus 86 ~~~~s 90 (91)
T 2dgw_A 86 SGPSS 90 (91)
T ss_dssp SCCCC
T ss_pred cCCCC
Confidence 88653
No 109
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.80 E-value=1.5e-18 Score=138.12 Aligned_cols=87 Identities=25% Similarity=0.374 Sum_probs=82.1
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 013840 347 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 426 (435)
Q Consensus 347 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a 426 (435)
..+++|||+|||..+|+++|+++|+.||+|.+|.|+.++ +|+++|||||+|.+.++|.+|++.|||..+.|++|+|++|
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 366899999999999999999999999999999999997 8999999999999999999999999999999999999999
Q ss_pred cCCcCCCC
Q 013840 427 RDNKQNKP 434 (435)
Q Consensus 427 ~~~~~~~~ 434 (435)
.......|
T Consensus 112 ~~~~~~~~ 119 (124)
T 2kt5_A 112 ASQIDLEH 119 (124)
T ss_dssp CCTTCCCC
T ss_pred CCCCCCCC
Confidence 98776554
No 110
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=1.6e-19 Score=136.64 Aligned_cols=79 Identities=16% Similarity=0.207 Sum_probs=71.8
Q ss_pred CCCceEEEeCCCC-CCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCc--eeCCeEEEE
Q 013840 347 PPGANLFIYHIPQ-EFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGC--QLGGKKLKV 423 (435)
Q Consensus 347 ~~~~~v~V~nLp~-~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~--~l~gr~i~v 423 (435)
.++++|||+|||. .+|+++|+++|+.||+|.+|.|+++ +|||||+|.+.++|.+|++.||+. .|.||+|+|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 3678999999999 9999999999999999999999865 479999999999999999999864 599999999
Q ss_pred EEccCCcC
Q 013840 424 QLKRDNKQ 431 (435)
Q Consensus 424 ~~a~~~~~ 431 (435)
.+++.+..
T Consensus 87 ~~a~~~~~ 94 (102)
T 1x4d_A 87 HLSQKYKR 94 (102)
T ss_dssp EEECCCTT
T ss_pred EECCCCCC
Confidence 99996553
No 111
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.80 E-value=6.1e-19 Score=146.47 Aligned_cols=88 Identities=20% Similarity=0.320 Sum_probs=83.0
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 013840 347 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 426 (435)
Q Consensus 347 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a 426 (435)
.+.++|||+|||..+|+++|+++|+.||+|.+|.|+.++.++.++|||||+|.+.++|.+|++.||+..|.|+.|+|+|+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 36699999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred cCCcCCCC
Q 013840 427 RDNKQNKP 434 (435)
Q Consensus 427 ~~~~~~~~ 434 (435)
+.+...+.
T Consensus 117 ~~~~~~~~ 124 (156)
T 1h2v_Z 117 AGFKEGRQ 124 (156)
T ss_dssp SCCCTTCC
T ss_pred CCCCCcCC
Confidence 98776554
No 112
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.80 E-value=2e-19 Score=143.82 Aligned_cols=87 Identities=25% Similarity=0.392 Sum_probs=82.0
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 013840 347 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 426 (435)
Q Consensus 347 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a 426 (435)
.+.++|||+|||..+|+++|+++|+.||.|.+|.|+.++.+|.++|||||+|.+.++|.+|++.|||..|.|+.|+|+|+
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 36789999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cCCcCCC
Q 013840 427 RDNKQNK 433 (435)
Q Consensus 427 ~~~~~~~ 433 (435)
+.+...+
T Consensus 100 ~~~~~~~ 106 (126)
T 3ex7_B 100 FVRGPPK 106 (126)
T ss_dssp EESSSCC
T ss_pred cCCCCCC
Confidence 8776543
No 113
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.80 E-value=2.7e-19 Score=147.62 Aligned_cols=82 Identities=23% Similarity=0.304 Sum_probs=77.7
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCC--cEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEE
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFG--RVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 425 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG--~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~ 425 (435)
..++|||+|||..+|+++|+++|+.|| .|.+|+|+.++.+|+++|||||+|.+.++|.+|+..|||..|+|++|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999999 999999999998999999999999999999999999999999999999999
Q ss_pred ccCC
Q 013840 426 KRDN 429 (435)
Q Consensus 426 a~~~ 429 (435)
++.+
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 9754
No 114
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.7e-19 Score=140.73 Aligned_cols=85 Identities=24% Similarity=0.370 Sum_probs=80.7
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 427 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a~ 427 (435)
..++|||+|||..+|+++|+++|+.||.|.+|.|+.++.+|+++|||||+|.+.++|.+|++. |+..|.|+.|+|.+++
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 459999999999999999999999999999999999988899999999999999999999998 9999999999999999
Q ss_pred CCcCCC
Q 013840 428 DNKQNK 433 (435)
Q Consensus 428 ~~~~~~ 433 (435)
.+....
T Consensus 105 ~~~~~~ 110 (116)
T 1x4b_A 105 AREESG 110 (116)
T ss_dssp SCCCCC
T ss_pred CCccCC
Confidence 887654
No 115
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.4e-19 Score=138.20 Aligned_cols=79 Identities=19% Similarity=0.235 Sum_probs=75.3
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 427 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a~ 427 (435)
..++|||+|||.++|+++|+++|+.||+|.+|.|++++. |+++|||||+|.++++|.+|+. +++..+.|+.|.|.+++
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 568999999999999999999999999999999999975 9999999999999999999999 89999999999999876
Q ss_pred C
Q 013840 428 D 428 (435)
Q Consensus 428 ~ 428 (435)
.
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 5
No 116
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.1e-19 Score=139.43 Aligned_cols=84 Identities=29% Similarity=0.530 Sum_probs=77.7
Q ss_pred cCCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEE
Q 013840 345 EGPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 424 (435)
Q Consensus 345 ~~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~ 424 (435)
.....++|||+|||..+|+++|+++|++||+|.+|.|+.++ +.++|||||+|.+.++|.+|++.|||..++|++|+|+
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34467999999999999999999999999999999999884 4589999999999999999999999999999999999
Q ss_pred EccCCc
Q 013840 425 LKRDNK 430 (435)
Q Consensus 425 ~a~~~~ 430 (435)
+++.+.
T Consensus 103 ~a~~~~ 108 (109)
T 2err_A 103 NATARV 108 (109)
T ss_dssp ECCCSC
T ss_pred ECCCCc
Confidence 998763
No 117
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=9e-19 Score=132.81 Aligned_cols=81 Identities=19% Similarity=0.284 Sum_probs=73.2
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcC--CceeCCeEEEE
Q 013840 346 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMN--GCQLGGKKLKV 423 (435)
Q Consensus 346 ~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~--g~~l~gr~i~v 423 (435)
.+++++|||+|||..+|+++|+++|+.||.|.+|.|+++ +|||||+|.+.++|.+|++.|+ +..+.|++|+|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 346789999999999999999999999999999988754 6899999999999999999874 67899999999
Q ss_pred EEccCCcCC
Q 013840 424 QLKRDNKQN 432 (435)
Q Consensus 424 ~~a~~~~~~ 432 (435)
.|++.+...
T Consensus 86 ~~a~~~~~~ 94 (101)
T 2cq1_A 86 QYSNHKELK 94 (101)
T ss_dssp EECSCSSCC
T ss_pred EEcCcccCc
Confidence 999987643
No 118
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.7e-19 Score=137.90 Aligned_cols=84 Identities=29% Similarity=0.533 Sum_probs=80.2
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 427 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a~ 427 (435)
..++|||+|||..+|+++|+++|+.||.|.+|.|+.++.+|.++|||||+|.+.++|.+|++.|||..+.|+.|+|++++
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 45899999999999999999999999999999999998899999999999999999999999999999999999999998
Q ss_pred CCcC
Q 013840 428 DNKQ 431 (435)
Q Consensus 428 ~~~~ 431 (435)
.+..
T Consensus 87 ~~~~ 90 (104)
T 1p1t_A 87 SEKN 90 (104)
T ss_dssp CTTH
T ss_pred Cccc
Confidence 8753
No 119
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.1e-20 Score=136.28 Aligned_cols=81 Identities=27% Similarity=0.473 Sum_probs=77.3
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 427 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a~ 427 (435)
++++|||+|||..+|+++|+++|+.||.|.+|.|+.++.+|+++|||||+|.+.++|.+|++.|||..+.|+.|++++++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 67899999999999999999999999999999999998899999999999999999999999999999999999988766
Q ss_pred C
Q 013840 428 D 428 (435)
Q Consensus 428 ~ 428 (435)
+
T Consensus 84 s 84 (85)
T 1x4e_A 84 S 84 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 120
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.79 E-value=9e-20 Score=139.25 Aligned_cols=82 Identities=17% Similarity=0.401 Sum_probs=76.1
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeC-CCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEE
Q 013840 347 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDK-ATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 425 (435)
Q Consensus 347 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~-~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~ 425 (435)
...++|||+|||.++|+++|+++|+.|| |.+|.|+.++ .+|+++|||||+|.+.++|.+|+ .|||..|+|+.|+|++
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 3669999999999999999999999999 9999999987 58999999999999999999999 8999999999999999
Q ss_pred ccCCc
Q 013840 426 KRDNK 430 (435)
Q Consensus 426 a~~~~ 430 (435)
++.+.
T Consensus 95 a~~~~ 99 (100)
T 2j76_E 95 ADQAQ 99 (100)
T ss_dssp CCCSC
T ss_pred ccCCC
Confidence 98875
No 121
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=9e-19 Score=134.09 Aligned_cols=84 Identities=18% Similarity=0.323 Sum_probs=76.4
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEE
Q 013840 346 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 425 (435)
Q Consensus 346 ~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~ 425 (435)
..+.++|||+|||..+|+++|+++|+.||.| .|+.+ .+++++|||||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 3467999999999999999999999999987 56666 5899999999999999999999999999999999999999
Q ss_pred ccCCcCCC
Q 013840 426 KRDNKQNK 433 (435)
Q Consensus 426 a~~~~~~~ 433 (435)
++.+....
T Consensus 88 a~~~~~~~ 95 (101)
T 2fc9_A 88 QGPRGSPN 95 (101)
T ss_dssp CSSCCCCC
T ss_pred cCCCCCCC
Confidence 98887554
No 122
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.79 E-value=9e-19 Score=142.81 Aligned_cols=81 Identities=28% Similarity=0.449 Sum_probs=76.8
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEE
Q 013840 346 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 425 (435)
Q Consensus 346 ~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~ 425 (435)
..+.++|||+|||..+|+++|+++|+.||+|.+|.|++++.+|+++|||||+|.++++|.+|++.|||..|.|++|+|++
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 34679999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred c
Q 013840 426 K 426 (435)
Q Consensus 426 a 426 (435)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 6
No 123
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.3e-19 Score=140.71 Aligned_cols=83 Identities=23% Similarity=0.364 Sum_probs=78.5
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 427 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a~ 427 (435)
..++|||+|||..+|+++|+++|+.||.|.+|.|+.++.+|+++|||||+|.+.++|.+|+ .|||..|.|+.|+|.+++
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 4589999999999999999999999999999999999888999999999999999999999 899999999999999998
Q ss_pred CCcC
Q 013840 428 DNKQ 431 (435)
Q Consensus 428 ~~~~ 431 (435)
.+..
T Consensus 103 ~~~~ 106 (114)
T 2cq4_A 103 AEKN 106 (114)
T ss_dssp HHHH
T ss_pred CCcc
Confidence 7643
No 124
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=5.8e-19 Score=134.83 Aligned_cols=83 Identities=12% Similarity=0.206 Sum_probs=76.3
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 013840 347 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 426 (435)
Q Consensus 347 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a 426 (435)
...++|||+|||+++|++||+++|+.||. ++|.|+.++ +|+++|||||+|.+.++|.+|++ +|+..|+||.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLN 89 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 35689999999999999999999999995 499999997 89999999999999999999995 7999999999999998
Q ss_pred cCCcCC
Q 013840 427 RDNKQN 432 (435)
Q Consensus 427 ~~~~~~ 432 (435)
......
T Consensus 90 ~~~~~~ 95 (102)
T 1wez_A 90 STAGTS 95 (102)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 876654
No 125
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.78 E-value=4.4e-19 Score=139.53 Aligned_cols=81 Identities=15% Similarity=0.168 Sum_probs=75.9
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCc---EEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEE
Q 013840 347 PPGANLFIYHIPQEFGDQELGNAFQAFGR---VLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKV 423 (435)
Q Consensus 347 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~---v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v 423 (435)
...++|||+|||+++|+++|+++|+.||. |.+|.|+.++. |+++|||||+|.+.++|.+|++ ||+..|+||.|+|
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 35689999999999999999999999999 89999999974 9999999999999999999999 8999999999999
Q ss_pred EEccCC
Q 013840 424 QLKRDN 429 (435)
Q Consensus 424 ~~a~~~ 429 (435)
.++..+
T Consensus 93 ~~a~~~ 98 (118)
T 2db1_A 93 FKSHRT 98 (118)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 998654
No 126
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=7.8e-19 Score=136.72 Aligned_cols=83 Identities=20% Similarity=0.321 Sum_probs=77.3
Q ss_pred CCceEEEeCCCCCCCHHHHH---HHhhcCCcEEEEEEEeeCCCC---CcceEEEEEeCCHHHHHHHHHhcCCceeCCeEE
Q 013840 348 PGANLFIYHIPQEFGDQELG---NAFQAFGRVLSAKVFVDKATG---VSKCFGFVSYESPASAQNAIAMMNGCQLGGKKL 421 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~---~~F~~fG~v~~v~i~~~~~~g---~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i 421 (435)
..++|||+|||..+|+++|+ ++|++||+|.+|.|+.++.++ +++|||||+|.+.++|.+|++.|||..|.|++|
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l 93 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTL 93 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEE
Confidence 56899999999999999999 999999999999999886543 566999999999999999999999999999999
Q ss_pred EEEEccCCc
Q 013840 422 KVQLKRDNK 430 (435)
Q Consensus 422 ~v~~a~~~~ 430 (435)
+|.+|+.+.
T Consensus 94 ~V~~a~~k~ 102 (111)
T 2cpi_A 94 KASLGTTKY 102 (111)
T ss_dssp EEESCCCCS
T ss_pred EEEeccccc
Confidence 999999876
No 127
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=6.4e-19 Score=136.84 Aligned_cols=82 Identities=17% Similarity=0.305 Sum_probs=74.5
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCC--ceeCCeEEEE
Q 013840 346 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG--CQLGGKKLKV 423 (435)
Q Consensus 346 ~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g--~~l~gr~i~v 423 (435)
.+++++|||+|||+++|+++|+++|+.||.|.+|.|+++ +|||||+|.+.++|.+|++.|++ ..|.|++|+|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 346789999999999999999999999999999999865 68999999999999999999874 6899999999
Q ss_pred EEccCCcCCC
Q 013840 424 QLKRDNKQNK 433 (435)
Q Consensus 424 ~~a~~~~~~~ 433 (435)
.|++.+....
T Consensus 102 ~~a~~k~~~~ 111 (119)
T 2ad9_A 102 QFSNHKELKT 111 (119)
T ss_dssp EECSSSSCCC
T ss_pred EEccCCCCCc
Confidence 9999887543
No 128
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.78 E-value=1.2e-18 Score=138.84 Aligned_cols=84 Identities=20% Similarity=0.383 Sum_probs=79.6
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 427 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a~ 427 (435)
+.++|||+|||..+|+++|+++|+.||.|.+|.|+.++.+|.++|||||+|.+.++|.+|+ .|||..|.|+.|+|++++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4589999999999999999999999999999999999889999999999999999999999 799999999999999998
Q ss_pred CCcCC
Q 013840 428 DNKQN 432 (435)
Q Consensus 428 ~~~~~ 432 (435)
....+
T Consensus 114 ~~~~~ 118 (124)
T 2jwn_A 114 TNMPG 118 (124)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 76654
No 129
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.9e-18 Score=132.55 Aligned_cols=85 Identities=25% Similarity=0.481 Sum_probs=77.9
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEE
Q 013840 346 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 425 (435)
Q Consensus 346 ~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~ 425 (435)
..+.++|||+|||..+|+++|+++|+.|+ .|.++.++.+++++|||||+|.+.++|.+|++.|||..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 34679999999999999999999999874 677888878999999999999999999999999999999999999999
Q ss_pred ccCCcCCC
Q 013840 426 KRDNKQNK 433 (435)
Q Consensus 426 a~~~~~~~ 433 (435)
++.+....
T Consensus 89 a~~~~~~~ 96 (102)
T 2fc8_A 89 AKPKGEGG 96 (102)
T ss_dssp CCCCCSSS
T ss_pred ecCCCCCC
Confidence 99887654
No 130
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=6.6e-19 Score=136.92 Aligned_cols=85 Identities=25% Similarity=0.279 Sum_probs=79.3
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCc-EEEEEEE-eeCCCCCcceEEEEEeCCHHHHHHHHHhcC--CceeCCeEEEE
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGR-VLSAKVF-VDKATGVSKCFGFVSYESPASAQNAIAMMN--GCQLGGKKLKV 423 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~-v~~v~i~-~~~~~g~~~g~afV~F~~~~~A~~A~~~l~--g~~l~gr~i~v 423 (435)
+.++|||+|||..+|+++|+++|+.||. |.+|.|+ .++.+|.++|||||+|.+.++|.+|++.|| +..+.|+.|+|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 6789999999999999999999999998 9999998 787788999999999999999999999996 59999999999
Q ss_pred EEccCCcCC
Q 013840 424 QLKRDNKQN 432 (435)
Q Consensus 424 ~~a~~~~~~ 432 (435)
.|++.+...
T Consensus 87 ~~a~~~~~~ 95 (109)
T 2dis_A 87 DWAEPEIDV 95 (109)
T ss_dssp EESCSSCST
T ss_pred EEcCCCCCc
Confidence 999987653
No 131
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3.8e-19 Score=139.21 Aligned_cols=82 Identities=15% Similarity=0.195 Sum_probs=77.3
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCcE-EEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEE
Q 013840 347 PPGANLFIYHIPQEFGDQELGNAFQAFGRV-LSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 425 (435)
Q Consensus 347 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v-~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~ 425 (435)
.+.++|||+|||..+|+++|+++|+.||.| .+|.|+.++ +|+++|||||+|.+.++|.+|++. |+..|.|+.|+|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 366899999999999999999999999999 899999997 999999999999999999999997 99999999999999
Q ss_pred ccCCc
Q 013840 426 KRDNK 430 (435)
Q Consensus 426 a~~~~ 430 (435)
+..+.
T Consensus 91 a~~~~ 95 (114)
T 2cpy_A 91 VTLED 95 (114)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 87654
No 132
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3.6e-18 Score=133.84 Aligned_cols=82 Identities=28% Similarity=0.515 Sum_probs=77.6
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCcee--------CC
Q 013840 347 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQL--------GG 418 (435)
Q Consensus 347 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l--------~g 418 (435)
.+.++|||+|||..+|+++|+++|+.||.|.+|.|+.++ +|.++|||||+|.+.++|.+|++.|||..+ .+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 467899999999999999999999999999999999997 899999999999999999999999999999 67
Q ss_pred eEEEEEEccCC
Q 013840 419 KKLKVQLKRDN 429 (435)
Q Consensus 419 r~i~v~~a~~~ 429 (435)
++|+|+|++.+
T Consensus 102 ~~l~v~~a~p~ 112 (114)
T 1x5o_A 102 EPLLCKFSGPS 112 (114)
T ss_dssp SCBEEEECCCS
T ss_pred CceeEEccCCC
Confidence 88999999855
No 133
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.77 E-value=2.5e-19 Score=129.14 Aligned_cols=75 Identities=21% Similarity=0.399 Sum_probs=72.1
Q ss_pred eEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 013840 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 426 (435)
Q Consensus 351 ~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a 426 (435)
+|||+|||..+|+++|+++|+.||+|.+|.|+.++.+|+++|||||+|.+.++|.+|++ |||..++|++|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999998889999999999999999999998 8999999999999885
No 134
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.3e-18 Score=133.73 Aligned_cols=82 Identities=17% Similarity=0.217 Sum_probs=76.3
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCcEEE-EEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEE
Q 013840 347 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLS-AKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 425 (435)
Q Consensus 347 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~-v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~ 425 (435)
...++|||+|||+.+|+++|+++|+.||.|.. |.|+.+ .+|+++|||||+|.++++|.+|++. |+..++||.|+|.+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 36689999999999999999999999999987 888888 6899999999999999999999998 99999999999999
Q ss_pred ccCCc
Q 013840 426 KRDNK 430 (435)
Q Consensus 426 a~~~~ 430 (435)
+..+.
T Consensus 91 ~~~~~ 95 (104)
T 1wg5_A 91 SSRAE 95 (104)
T ss_dssp ECTTT
T ss_pred CCHHH
Confidence 87654
No 135
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.77 E-value=9.2e-19 Score=134.82 Aligned_cols=82 Identities=23% Similarity=0.361 Sum_probs=76.0
Q ss_pred CCceEEEeCCCCCC------CHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCe-E
Q 013840 348 PGANLFIYHIPQEF------GDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGK-K 420 (435)
Q Consensus 348 ~~~~v~V~nLp~~~------t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr-~ 420 (435)
..++|||+|||..+ |+++|+++|++||.|.+|.|++ .+|+++|||||+|.+.++|.+|+..|||..|.|+ +
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~--~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC--BTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC--CCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 46899999999999 7899999999999999999983 5899999999999999999999999999999998 9
Q ss_pred EEEEEccCCcC
Q 013840 421 LKVQLKRDNKQ 431 (435)
Q Consensus 421 i~v~~a~~~~~ 431 (435)
|+|.++....+
T Consensus 92 l~V~~a~~~~k 102 (105)
T 2nlw_A 92 FRVNLFTDFDK 102 (105)
T ss_dssp EEEECSCCCCC
T ss_pred EEEEEcchHhh
Confidence 99999987653
No 136
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.77 E-value=1e-18 Score=138.37 Aligned_cols=81 Identities=17% Similarity=0.292 Sum_probs=74.2
Q ss_pred CCCceEEEeCCCCCCCHHHHH----HHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEE
Q 013840 347 PPGANLFIYHIPQEFGDQELG----NAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLK 422 (435)
Q Consensus 347 ~~~~~v~V~nLp~~~t~~~L~----~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~ 422 (435)
+++++|||+|||..+++++|+ ++|++||.|.+|.+.. +++++|||||+|.+.++|..|+..|||..|.|++|+
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 357899999999999999876 6999999999988753 688999999999999999999999999999999999
Q ss_pred EEEccCCc
Q 013840 423 VQLKRDNK 430 (435)
Q Consensus 423 v~~a~~~~ 430 (435)
|.|++.+.
T Consensus 104 V~~a~~~~ 111 (127)
T 2a3j_A 104 ITFSETPQ 111 (127)
T ss_dssp EEECCCCC
T ss_pred EEEccCcc
Confidence 99998765
No 137
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.77 E-value=2e-18 Score=144.56 Aligned_cols=86 Identities=26% Similarity=0.417 Sum_probs=79.9
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 013840 347 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 426 (435)
Q Consensus 347 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a 426 (435)
.+.++|||+|||..+|+++|+++|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+|+..|||..|.|+.|+|.|+
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 35689999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cCCcCC
Q 013840 427 RDNKQN 432 (435)
Q Consensus 427 ~~~~~~ 432 (435)
+.+...
T Consensus 150 ~~~~~~ 155 (165)
T 1rk8_A 150 FVKGPK 155 (165)
T ss_dssp EECC--
T ss_pred cCCCCC
Confidence 877643
No 138
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=6.9e-19 Score=135.46 Aligned_cols=79 Identities=16% Similarity=0.253 Sum_probs=73.5
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 427 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a~ 427 (435)
..++|||+|||+++|++||+++|+.| .|.+|.|+.++ +|+++|||||+|.++++|.+|+ .+|+..|+||.|+|..+.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 45899999999999999999999999 89999999997 5999999999999999999999 589999999999998876
Q ss_pred CC
Q 013840 428 DN 429 (435)
Q Consensus 428 ~~ 429 (435)
.+
T Consensus 92 ~~ 93 (109)
T 2dnn_A 92 ER 93 (109)
T ss_dssp HH
T ss_pred cc
Confidence 43
No 139
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=2.9e-19 Score=129.58 Aligned_cols=76 Identities=25% Similarity=0.393 Sum_probs=73.4
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 013840 350 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 426 (435)
Q Consensus 350 ~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a 426 (435)
++|||+|||.++|+++|+++|++||+|.+|.|+.++.+|+++|||||+|.+.++|.+|++.++ ..+.|++|+|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 579999999999999999999999999999999998889999999999999999999999999 9999999999987
No 140
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.77 E-value=1.2e-19 Score=135.88 Aligned_cols=82 Identities=23% Similarity=0.450 Sum_probs=74.2
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEccCC
Q 013840 350 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRDN 429 (435)
Q Consensus 350 ~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a~~~ 429 (435)
++|||+|||..+|+++|+++|+.||+|.+|.|+.++.+|+++|||||+|.+.+ |.+|+..|||..++|++|+|++|..+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999888999999999999999 99999999999999999999999887
Q ss_pred cCC
Q 013840 430 KQN 432 (435)
Q Consensus 430 ~~~ 432 (435)
...
T Consensus 81 ~~~ 83 (90)
T 2ki2_A 81 KSL 83 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 654
No 141
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=2.3e-18 Score=128.79 Aligned_cols=79 Identities=28% Similarity=0.553 Sum_probs=74.0
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 013840 347 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 426 (435)
Q Consensus 347 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a 426 (435)
.+.++|||+|||.++|+++|+++|+.||+|.+|.|+ +|||||+|.+.++|.+|++.||+..+.|++|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 367999999999999999999999999999999996 579999999999999999999999999999999999
Q ss_pred cCCcCCC
Q 013840 427 RDNKQNK 433 (435)
Q Consensus 427 ~~~~~~~ 433 (435)
+.+....
T Consensus 78 ~~~~~~~ 84 (90)
T 2dnq_A 78 KNKSKAS 84 (90)
T ss_dssp SCCCCCC
T ss_pred CCCCCCC
Confidence 9887654
No 142
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.77 E-value=3.8e-19 Score=143.32 Aligned_cols=85 Identities=26% Similarity=0.425 Sum_probs=80.9
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 427 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a~ 427 (435)
+.++|||+|||..+|+++|+++|+.||.|.+|.|+.++.+++++|||||+|.+.++|.+|++.|||..|.|++|+|++++
T Consensus 46 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~ 125 (135)
T 2lea_A 46 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 125 (135)
T ss_dssp GCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 56899999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred CCcCC
Q 013840 428 DNKQN 432 (435)
Q Consensus 428 ~~~~~ 432 (435)
.+...
T Consensus 126 ~~~~~ 130 (135)
T 2lea_A 126 YGRPP 130 (135)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87654
No 143
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=7e-19 Score=138.19 Aligned_cols=88 Identities=20% Similarity=0.382 Sum_probs=76.7
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 013840 347 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 426 (435)
Q Consensus 347 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a 426 (435)
.+.++|||+|||..+|+++|+++|+.||.|..+.+..+..+|+++|||||+|.+.++|.+|++.|||..|.|++|+|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 36789999999999999999999999999944333222237889999999999999999999999999999999999999
Q ss_pred cCCcCCCC
Q 013840 427 RDNKQNKP 434 (435)
Q Consensus 427 ~~~~~~~~ 434 (435)
+.+....|
T Consensus 103 ~~~~~~~~ 110 (115)
T 2cpx_A 103 KNKKQRSS 110 (115)
T ss_dssp CCCSCCCC
T ss_pred cCCCCCCC
Confidence 99887654
No 144
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.77 E-value=6.8e-19 Score=141.01 Aligned_cols=81 Identities=12% Similarity=0.143 Sum_probs=76.1
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCc---EEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEE
Q 013840 347 PPGANLFIYHIPQEFGDQELGNAFQAFGR---VLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKV 423 (435)
Q Consensus 347 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~---v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v 423 (435)
...++|||+|||+++|+++|+++|+.||. |.+|.|+.++. |+++|||||+|.+.++|.+|++ ||+..|+||.|+|
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V 119 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV 119 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence 35689999999999999999999999999 89999999975 9999999999999999999999 9999999999999
Q ss_pred EEccCC
Q 013840 424 QLKRDN 429 (435)
Q Consensus 424 ~~a~~~ 429 (435)
.++..+
T Consensus 120 ~~a~~~ 125 (136)
T 2hgl_A 120 FKSHRT 125 (136)
T ss_dssp EECCHH
T ss_pred EECChH
Confidence 998654
No 145
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=3.4e-18 Score=129.76 Aligned_cols=80 Identities=25% Similarity=0.461 Sum_probs=74.2
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeC--CeEEEEE
Q 013840 347 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLG--GKKLKVQ 424 (435)
Q Consensus 347 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~--gr~i~v~ 424 (435)
++.++|||+|||..+|+++|+++|++||.|.+|.+..+ +|||||+|.+.++|.+|++.|||..+. |++|+|+
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 46689999999999999999999999999999998643 689999999999999999999999999 9999999
Q ss_pred EccCCcCC
Q 013840 425 LKRDNKQN 432 (435)
Q Consensus 425 ~a~~~~~~ 432 (435)
|++.+...
T Consensus 89 ~a~~~~~~ 96 (97)
T 1why_A 89 FAKSGPSS 96 (97)
T ss_dssp ECCCCCCC
T ss_pred ECCCCCCC
Confidence 99988654
No 146
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3.3e-18 Score=126.48 Aligned_cols=76 Identities=20% Similarity=0.358 Sum_probs=71.1
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhc-CCceeCCeEEEEE
Q 013840 346 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM-NGCQLGGKKLKVQ 424 (435)
Q Consensus 346 ~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l-~g~~l~gr~i~v~ 424 (435)
....++|||+|||..+|+++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|++.| ||..+.|++|+|+
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 346789999999999999999999999999999999864 689999999999999999999 9999999999999
Q ss_pred Ecc
Q 013840 425 LKR 427 (435)
Q Consensus 425 ~a~ 427 (435)
|||
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 986
No 147
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.76 E-value=1.9e-19 Score=137.91 Aligned_cols=84 Identities=24% Similarity=0.362 Sum_probs=77.4
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 427 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a~ 427 (435)
..++|||+|||..+|+++|+++|+.||.|.. .++.++.+|+++|||||+|.+.++|.+|++ |||..+.|+.|+|.+++
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 5689999999999999999999999999988 666666689999999999999999999999 99999999999999999
Q ss_pred CCcCCC
Q 013840 428 DNKQNK 433 (435)
Q Consensus 428 ~~~~~~ 433 (435)
.+...+
T Consensus 94 ~~~~~~ 99 (101)
T 1fj7_A 94 GRDGTR 99 (101)
T ss_dssp CCCCSS
T ss_pred CCCCCC
Confidence 887653
No 148
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.76 E-value=3.2e-19 Score=133.37 Aligned_cols=85 Identities=20% Similarity=0.352 Sum_probs=75.8
Q ss_pred CceEEEecCCCCCCHHHHHHHHhccC-ceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCceeee
Q 013840 14 RVKLFVGQVPKHMTEAQLLAMFKEFA-LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVK 92 (435)
Q Consensus 14 ~~~l~v~nLp~~~t~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~~~ 92 (435)
+.+|||+|||+++|+++|+++|+.|| +|.+|++++|+.++.++|||||+|.+.++|++||+.+++...+.| +.|.+.
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~g--r~i~V~ 78 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILG--QKVSMH 78 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETT--EEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECC--EEEEEE
Confidence 57999999999999999999999999 899999999999999999999999999999999998765444555 899999
Q ss_pred ccCchhcc
Q 013840 93 YADGELER 100 (435)
Q Consensus 93 ~~~~~~~~ 100 (435)
++.++...
T Consensus 79 ~a~~~~~~ 86 (91)
T 2lxi_A 79 YSDPKPKI 86 (91)
T ss_dssp CCCSCCCC
T ss_pred EcCCCCCC
Confidence 98776544
No 149
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=5.8e-18 Score=131.10 Aligned_cols=78 Identities=15% Similarity=0.260 Sum_probs=73.2
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCC-----eEEE
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGG-----KKLK 422 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~g-----r~i~ 422 (435)
..++|||+|||.++|+++|+++|+.||+|.+|.|+.+ |||||+|.+.++|.+|++.|||..|.| +.|+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~ 86 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 86 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEE
Confidence 5689999999999999999999999999999999765 799999999999999999999999999 9999
Q ss_pred EEEccCCcCC
Q 013840 423 VQLKRDNKQN 432 (435)
Q Consensus 423 v~~a~~~~~~ 432 (435)
|++++.+...
T Consensus 87 V~~a~~~~~~ 96 (108)
T 1x4c_A 87 VKVDGPRSPS 96 (108)
T ss_dssp EEESSCCSCC
T ss_pred EEeCCCCCCC
Confidence 9999987643
No 150
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=7.2e-19 Score=139.91 Aligned_cols=82 Identities=16% Similarity=0.255 Sum_probs=75.9
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 427 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a~ 427 (435)
..++|||+|||+++|+++|+++|+.||.|..+.++.+..+|+++|||||+|.+.++|.+|++ |||..|+|+.|+|.++.
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~ 102 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPIT 102 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 56899999999999999999999999999987666666799999999999999999999999 99999999999999987
Q ss_pred CCc
Q 013840 428 DNK 430 (435)
Q Consensus 428 ~~~ 430 (435)
.+.
T Consensus 103 ~~~ 105 (124)
T 1wel_A 103 KKG 105 (124)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 151
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.76 E-value=1.8e-18 Score=133.29 Aligned_cols=79 Identities=13% Similarity=0.130 Sum_probs=71.9
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCC-cEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFG-RVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 426 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG-~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a 426 (435)
..++|||+|||+++|+++|+++|+.|| +|..+.|.. ++++|||||+|.+.++|.+|++.|||..|.||.|+|.++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 568999999999999999999999999 999998853 347899999999999999999999999999999999999
Q ss_pred cCCc
Q 013840 427 RDNK 430 (435)
Q Consensus 427 ~~~~ 430 (435)
+...
T Consensus 103 ~~~p 106 (111)
T 2jvr_A 103 DNPP 106 (111)
T ss_dssp CC--
T ss_pred CCCC
Confidence 8664
No 152
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=5.3e-18 Score=127.30 Aligned_cols=81 Identities=26% Similarity=0.468 Sum_probs=74.5
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEE
Q 013840 346 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 425 (435)
Q Consensus 346 ~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~ 425 (435)
....++|||+|||..+|+++|+++|+.||.|.+|.|+ ++||||+|.+.++|.+|++.|||..+.|+.|+|++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 3467999999999999999999999999999999996 34999999999999999999999999999999999
Q ss_pred ccCCcCCCC
Q 013840 426 KRDNKQNKP 434 (435)
Q Consensus 426 a~~~~~~~~ 434 (435)
++.+....|
T Consensus 79 a~~~~~~~~ 87 (92)
T 2dgt_A 79 STSRLRTAS 87 (92)
T ss_dssp SSCCCSCCC
T ss_pred ccCCCCCCC
Confidence 998876554
No 153
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=4.3e-18 Score=129.14 Aligned_cols=81 Identities=25% Similarity=0.485 Sum_probs=73.3
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEE
Q 013840 346 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 425 (435)
Q Consensus 346 ~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~ 425 (435)
....++|||+|||..+|+++|+++|+.||.|. +.++.+ +++|||||+|.+.++|.+|++.|||..|.|++|+|.+
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34578999999999999999999999999997 666644 5789999999999999999999999999999999999
Q ss_pred ccCCcC
Q 013840 426 KRDNKQ 431 (435)
Q Consensus 426 a~~~~~ 431 (435)
++.+..
T Consensus 91 a~~~~~ 96 (97)
T 2e5j_A 91 ARQQRD 96 (97)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 988753
No 154
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.75 E-value=6.4e-18 Score=127.95 Aligned_cols=77 Identities=25% Similarity=0.475 Sum_probs=72.0
Q ss_pred CCCCceEEEeCCCC-CCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEE
Q 013840 346 GPPGANLFIYHIPQ-EFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 424 (435)
Q Consensus 346 ~~~~~~v~V~nLp~-~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~ 424 (435)
.+++++|||+|||. .+|+++|+++|+.||.|.+|.|. +|||||+|.+.++|.+|+..|||..+.|++|+|+
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 90 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILE 90 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34679999999998 99999999999999999999983 6899999999999999999999999999999999
Q ss_pred EccCCc
Q 013840 425 LKRDNK 430 (435)
Q Consensus 425 ~a~~~~ 430 (435)
+++.+.
T Consensus 91 ~a~~~~ 96 (97)
T 2xnq_A 91 VSSSNA 96 (97)
T ss_dssp ECCCCC
T ss_pred ecCCCC
Confidence 998765
No 155
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.2e-18 Score=132.21 Aligned_cols=82 Identities=24% Similarity=0.496 Sum_probs=76.1
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEE
Q 013840 346 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 425 (435)
Q Consensus 346 ~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~ 425 (435)
....++|||+|||..+|+++|+++|+.||.|.+|.|+.+ +|||||+|.+.++|.+|+..|||..|.|++|+|.|
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 346789999999999999999999999999999999865 68999999999999999999999999999999999
Q ss_pred ccCCcCCC
Q 013840 426 KRDNKQNK 433 (435)
Q Consensus 426 a~~~~~~~ 433 (435)
++.+....
T Consensus 96 a~~~~~~~ 103 (109)
T 1x4g_A 96 GKESPDMT 103 (109)
T ss_dssp CCCCCSSC
T ss_pred cCCCCCCC
Confidence 99887654
No 156
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.75 E-value=3.2e-18 Score=132.27 Aligned_cols=79 Identities=25% Similarity=0.463 Sum_probs=73.0
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEE
Q 013840 346 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 425 (435)
Q Consensus 346 ~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~ 425 (435)
....++|||+|||.++|+++|+++|+.||.|.+|.|. +|||||+|.+.++|.+|++.|||..+.|+.|+|.+
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3467999999999999999999999999999999997 58999999999999999999999999999999999
Q ss_pred ccCCcCC
Q 013840 426 KRDNKQN 432 (435)
Q Consensus 426 a~~~~~~ 432 (435)
++.+...
T Consensus 100 a~~~~~r 106 (108)
T 2jvo_A 100 SKLPAKR 106 (108)
T ss_dssp CSCCC--
T ss_pred ecCCCCC
Confidence 9987654
No 157
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=3.4e-18 Score=130.30 Aligned_cols=80 Identities=24% Similarity=0.450 Sum_probs=74.3
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEE
Q 013840 346 GPPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 425 (435)
Q Consensus 346 ~~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~ 425 (435)
..+.++|||+|||..+|+++|+++|++||+|.+|.|.++ +|||||+|.+.++|.+|++.|||..|.|++|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 346789999999999999999999999999999999754 68999999999999999999999999999999999
Q ss_pred ccCCcC
Q 013840 426 KRDNKQ 431 (435)
Q Consensus 426 a~~~~~ 431 (435)
++.+..
T Consensus 86 a~~~~~ 91 (99)
T 2cpj_A 86 ACHSAS 91 (99)
T ss_dssp SSCCSC
T ss_pred cCCCCC
Confidence 998764
No 158
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.75 E-value=8.2e-18 Score=129.13 Aligned_cols=78 Identities=23% Similarity=0.473 Sum_probs=72.7
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 427 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a~ 427 (435)
+.++|||+|||..+|+++|+++|+.||.|.+|.|+ +|||||+|.+.++|.+|++.||+..|.|+.|+|.+++
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 81 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAK 81 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcC
Confidence 56899999999999999999999999999999986 3599999999999999999999999999999999998
Q ss_pred CCcCCC
Q 013840 428 DNKQNK 433 (435)
Q Consensus 428 ~~~~~~ 433 (435)
.+...+
T Consensus 82 ~~~~~~ 87 (103)
T 2dgu_A 82 PPDQKR 87 (103)
T ss_dssp CCCCCC
T ss_pred CCcccc
Confidence 877543
No 159
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.6e-17 Score=126.52 Aligned_cols=79 Identities=19% Similarity=0.367 Sum_probs=72.9
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcC--CcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEE
Q 013840 347 PPGANLFIYHIPQEFGDQELGNAFQAF--GRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 424 (435)
Q Consensus 347 ~~~~~v~V~nLp~~~t~~~L~~~F~~f--G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~ 424 (435)
...++|||+|||..+|+++|+++|+.| |.|.+|.+. +|||||+|.+.++|.+|+..|||..|.|++|+|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 84 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 467899999999999999999999999 999999874 5799999999999999999999999999999999
Q ss_pred EccCCcCCC
Q 013840 425 LKRDNKQNK 433 (435)
Q Consensus 425 ~a~~~~~~~ 433 (435)
+++.+....
T Consensus 85 ~a~~~~~~~ 93 (99)
T 2cpd_A 85 LAKPVDKDS 93 (99)
T ss_dssp CCCCCCCCC
T ss_pred ECCCCCCCC
Confidence 999887543
No 160
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.75 E-value=9.6e-19 Score=127.98 Aligned_cols=74 Identities=23% Similarity=0.393 Sum_probs=68.6
Q ss_pred CceEEEeCCCCCC------CHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCe-EE
Q 013840 349 GANLFIYHIPQEF------GDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGK-KL 421 (435)
Q Consensus 349 ~~~v~V~nLp~~~------t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr-~i 421 (435)
+++|||+|||..+ |+++|+++|++||+|.+|.|++ .+|+++|||||+|.+.++|.+|++.|||..+.|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC--BTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC--CCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3689999999999 7899999999999999999873 4899999999999999999999999999999999 88
Q ss_pred EEE
Q 013840 422 KVQ 424 (435)
Q Consensus 422 ~v~ 424 (435)
+|+
T Consensus 79 ~V~ 81 (81)
T 2krb_A 79 RVN 81 (81)
T ss_dssp CCC
T ss_pred EeC
Confidence 763
No 161
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=2.4e-18 Score=132.02 Aligned_cols=81 Identities=16% Similarity=0.275 Sum_probs=72.4
Q ss_pred CCCCceEEEeCCCCC-CCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCC--ceeCCeEEE
Q 013840 346 GPPGANLFIYHIPQE-FGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG--CQLGGKKLK 422 (435)
Q Consensus 346 ~~~~~~v~V~nLp~~-~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g--~~l~gr~i~ 422 (435)
..++++|||+|||.+ +|+++|+++|+.||+|.+|.|++ ++|||||+|.+.++|..|++.||+ ..|.||+|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 346789999999998 99999999999999999999974 368999999999999999998864 569999999
Q ss_pred EEEccCCcCC
Q 013840 423 VQLKRDNKQN 432 (435)
Q Consensus 423 v~~a~~~~~~ 432 (435)
|.+++.+..-
T Consensus 96 V~~a~~~~~~ 105 (112)
T 1x4f_A 96 VDLSEKYKKL 105 (112)
T ss_dssp EEEECSCSSS
T ss_pred EEECcccccc
Confidence 9999877653
No 162
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.75 E-value=2.5e-18 Score=130.63 Aligned_cols=83 Identities=23% Similarity=0.405 Sum_probs=76.3
Q ss_pred CCCCceEEEeCCCCCCCHHHHH----HHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEE
Q 013840 346 GPPGANLFIYHIPQEFGDQELG----NAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKL 421 (435)
Q Consensus 346 ~~~~~~v~V~nLp~~~t~~~L~----~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i 421 (435)
.+++++|||+|||..+|+++|+ ++|+.||.|.+|.|+. +|.++|||||+|.+.++|.+|+..|||..+.|++|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 3467999999999999999999 9999999999999873 57889999999999999999999999999999999
Q ss_pred EEEEccCCcC
Q 013840 422 KVQLKRDNKQ 431 (435)
Q Consensus 422 ~v~~a~~~~~ 431 (435)
+|++++.+..
T Consensus 82 ~v~~a~~~~~ 91 (97)
T 1nu4_A 82 RIQYAKTDSD 91 (97)
T ss_dssp EEEECSSCCT
T ss_pred EEEEccCCCc
Confidence 9999998753
No 163
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.75 E-value=1.8e-18 Score=132.40 Aligned_cols=79 Identities=22% Similarity=0.448 Sum_probs=74.1
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEccCC
Q 013840 350 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKRDN 429 (435)
Q Consensus 350 ~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a~~~ 429 (435)
++|||+|||..+|+++|+++|++||+|.+|.|+.+ ++|||||+|.+.++|.+|++.|||..+.|+.|+|++++.+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999866 6899999999999999999999999999999999999987
Q ss_pred cCCC
Q 013840 430 KQNK 433 (435)
Q Consensus 430 ~~~~ 433 (435)
....
T Consensus 76 ~~~~ 79 (101)
T 2hvz_A 76 PRRS 79 (101)
T ss_dssp CCSS
T ss_pred CCcc
Confidence 7544
No 164
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=8.3e-18 Score=125.68 Aligned_cols=78 Identities=29% Similarity=0.482 Sum_probs=72.6
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 013840 347 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 426 (435)
Q Consensus 347 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a 426 (435)
...++|||+|||..+|+++|+++|+.||.|.+|.|++ +||||+|.+.++|.+|++.|||..+.|++|+|+++
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 4678999999999999999999999999999999963 49999999999999999999999999999999999
Q ss_pred cCCcCC
Q 013840 427 RDNKQN 432 (435)
Q Consensus 427 ~~~~~~ 432 (435)
+.+...
T Consensus 79 ~~~~~~ 84 (90)
T 2dnp_A 79 TKGQKK 84 (90)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 987654
No 165
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.75 E-value=2.8e-18 Score=165.25 Aligned_cols=84 Identities=18% Similarity=0.424 Sum_probs=79.9
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 427 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a~ 427 (435)
+.++|||+|||..+|+++|+++|+.||.|..|.|+.++.+|+++|||||+|.+.++|.+||..|||..|.|+.|.|.|++
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~ 180 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence 45899999999999999999999999999999999998899999999999999999999999999999999999999998
Q ss_pred CCcC
Q 013840 428 DNKQ 431 (435)
Q Consensus 428 ~~~~ 431 (435)
.+..
T Consensus 181 ~~~~ 184 (437)
T 3pgw_S 181 GRTV 184 (437)
T ss_pred CCCC
Confidence 7643
No 166
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.74 E-value=6.4e-18 Score=130.75 Aligned_cols=84 Identities=19% Similarity=0.236 Sum_probs=76.3
Q ss_pred ccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCcee
Q 013840 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (435)
Q Consensus 11 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~ 90 (435)
+.+.++|||+|||+++|+++|+++|++||.|.+++++.|+.|++++|||||+|.+.++|++|++.||+..+ .| +.|.
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~-~g--r~i~ 79 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSV-MG--NIIH 79 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE-TT--EECE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEE-CC--eEEE
Confidence 35678999999999999999999999999999999999999999999999999999999999999999864 44 8888
Q ss_pred eeccCch
Q 013840 91 VKYADGE 97 (435)
Q Consensus 91 ~~~~~~~ 97 (435)
+.++...
T Consensus 80 V~~a~~~ 86 (110)
T 3s8s_A 80 AQLDIKG 86 (110)
T ss_dssp EEECSTT
T ss_pred EEECCCC
Confidence 8877543
No 167
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.74 E-value=5.4e-18 Score=128.45 Aligned_cols=82 Identities=15% Similarity=0.315 Sum_probs=74.9
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 013840 347 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 426 (435)
Q Consensus 347 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a 426 (435)
.+.++|||+|||..+|+++|+++|+.||.|..+ . .+|.++|||||+|.+.++|.+|+..|||..+.|++|+|.++
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~---~--~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV---S--QDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE---E--ETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe---C--CCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 366899999999999999999999999988766 2 37899999999999999999999999999999999999999
Q ss_pred cCCcCCC
Q 013840 427 RDNKQNK 433 (435)
Q Consensus 427 ~~~~~~~ 433 (435)
+.+...+
T Consensus 89 ~~~~~~~ 95 (96)
T 1fjc_A 89 GEKGGTR 95 (96)
T ss_dssp SSSCCCC
T ss_pred CCCCCCC
Confidence 8887553
No 168
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.74 E-value=9.3e-18 Score=129.65 Aligned_cols=93 Identities=39% Similarity=0.683 Sum_probs=84.7
Q ss_pred cccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCC
Q 013840 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (435)
Q Consensus 7 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~ 86 (435)
....+.+.++|||+|||+++|+++|+++|+.||.|..|+++.++.++.++|||||+|.+.++|.+|++.||+..++.+.+
T Consensus 6 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g 85 (106)
T 2dgp_A 6 SGMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMN 85 (106)
T ss_dssp CSCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCS
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCC
Confidence 35566788999999999999999999999999999999999999899999999999999999999999999988777777
Q ss_pred CceeeeccCchhc
Q 013840 87 SPLQVKYADGELE 99 (435)
Q Consensus 87 ~~i~~~~~~~~~~ 99 (435)
+.|.+.++.....
T Consensus 86 ~~l~v~~a~~~~~ 98 (106)
T 2dgp_A 86 RPIQVKPADSESR 98 (106)
T ss_dssp SCCEEEECCCCSC
T ss_pred ceEEEEECCcccc
Confidence 9999999876544
No 169
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.74 E-value=4.4e-18 Score=130.61 Aligned_cols=80 Identities=21% Similarity=0.404 Sum_probs=73.1
Q ss_pred ceEEEeCC----CCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCC----HHH----HHHHHH--hcCCce
Q 013840 350 ANLFIYHI----PQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYES----PAS----AQNAIA--MMNGCQ 415 (435)
Q Consensus 350 ~~v~V~nL----p~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~----~~~----A~~A~~--~l~g~~ 415 (435)
+.|||+|| |+.+++++|+++|+.||+|.+|.++.|+.+|+++|||||+|.+ +++ |.+|+. .|+|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 444 788988 789999
Q ss_pred eCCeEEEEEEccCC
Q 013840 416 LGGKKLKVQLKRDN 429 (435)
Q Consensus 416 l~gr~i~v~~a~~~ 429 (435)
|+||+|+|.+-+..
T Consensus 83 I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 83 IMGFKFEVILNKHS 96 (136)
T ss_dssp ETTEEEEEEECCTT
T ss_pred ecCcEEEEEECccc
Confidence 99999999997654
No 170
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.74 E-value=3.5e-18 Score=130.80 Aligned_cols=76 Identities=22% Similarity=0.379 Sum_probs=71.5
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 427 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a~ 427 (435)
..++|||+|||..+|+++|+++|+.||.|.+|.|. +++|||||+|.+.++|.+|+..|||..++|++|+|+|++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 46899999999999999999999999999999997 347899999999999999999999999999999999998
Q ss_pred CC
Q 013840 428 DN 429 (435)
Q Consensus 428 ~~ 429 (435)
++
T Consensus 100 ~~ 101 (101)
T 2la4_A 100 ER 101 (101)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 171
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.74 E-value=2.5e-18 Score=128.93 Aligned_cols=85 Identities=20% Similarity=0.398 Sum_probs=75.1
Q ss_pred CccCCceEEEecCCCCCCHHHHHHHHhccCc--eeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCC---cCCC
Q 013840 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFAL--VDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKK---TLPG 84 (435)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~--i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~---~~~~ 84 (435)
....-.||||+|||+++|+++|+++|++||. +.+|++++|+.|++++|||||+|.+.++|++||+.||+.. .++|
T Consensus 5 ~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G 84 (95)
T 2lkz_A 5 HHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG 84 (95)
T ss_dssp SSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT
T ss_pred cCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC
Confidence 4456789999999999999999999999995 6789999999999999999999999999999999999864 2444
Q ss_pred CCCceeeeccCc
Q 013840 85 ASSPLQVKYADG 96 (435)
Q Consensus 85 ~~~~i~~~~~~~ 96 (435)
+.|.+.|+..
T Consensus 85 --r~i~V~~Aks 94 (95)
T 2lkz_A 85 --KTIGVDFAKS 94 (95)
T ss_dssp --EEEEEEECCC
T ss_pred --EEEEEEEccC
Confidence 8898888753
No 172
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.74 E-value=6.8e-19 Score=136.08 Aligned_cols=82 Identities=12% Similarity=0.117 Sum_probs=76.4
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCc---EEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEE
Q 013840 347 PPGANLFIYHIPQEFGDQELGNAFQAFGR---VLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKV 423 (435)
Q Consensus 347 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~---v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v 423 (435)
...++|||+|||+++|+++|+++|+.||. |.+|.|+.++. |+++|||||+|.+.++|.+|+. +|+..++||.|+|
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 36789999999999999999999999998 89999999975 9999999999999999999999 8999999999999
Q ss_pred EEccCCc
Q 013840 424 QLKRDNK 430 (435)
Q Consensus 424 ~~a~~~~ 430 (435)
.++..+.
T Consensus 87 ~~a~~~~ 93 (107)
T 2lmi_A 87 YEINNED 93 (107)
T ss_dssp EECCHHH
T ss_pred EECCHHH
Confidence 9987543
No 173
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=6.2e-18 Score=122.60 Aligned_cols=72 Identities=25% Similarity=0.458 Sum_probs=65.6
Q ss_pred ceEEEeCCCCCCCHHH----HHHHhhcC-CcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEE
Q 013840 350 ANLFIYHIPQEFGDQE----LGNAFQAF-GRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 424 (435)
Q Consensus 350 ~~v~V~nLp~~~t~~~----L~~~F~~f-G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~ 424 (435)
+.|||+|||+.+++++ |+++|+.| |+|.+| +| |+|||.|.+.++|.+|++.|||..|.||+|+|+
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~ 79 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVS 79 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEE
Confidence 4499999999999987 55899999 599999 33 999999999999999999999999999999999
Q ss_pred EccCCcC
Q 013840 425 LKRDNKQ 431 (435)
Q Consensus 425 ~a~~~~~ 431 (435)
||+.+.+
T Consensus 80 ~A~~~sd 86 (96)
T 2diu_A 80 FTPKNRE 86 (96)
T ss_dssp SSCCSCC
T ss_pred ecCCCcc
Confidence 9998764
No 174
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.59 E-value=1.4e-19 Score=142.34 Aligned_cols=86 Identities=21% Similarity=0.405 Sum_probs=81.2
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCcEEE--------EEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCC
Q 013840 347 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLS--------AKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGG 418 (435)
Q Consensus 347 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~--------v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~g 418 (435)
.+.++|||+|||..+|+++|+++|+.||.|.. |.|+.++.+|+++|||||+|.+.++|.+|++.|||..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 46789999999999999999999999999999 8999988889999999999999999999999999999999
Q ss_pred eEEEEEEccCCcCC
Q 013840 419 KKLKVQLKRDNKQN 432 (435)
Q Consensus 419 r~i~v~~a~~~~~~ 432 (435)
++|+|.+++.+...
T Consensus 85 ~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 85 NPIKVSFATRRADF 98 (116)
Confidence 99999999987654
No 175
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.74 E-value=1.9e-17 Score=128.70 Aligned_cols=78 Identities=24% Similarity=0.471 Sum_probs=72.3
Q ss_pred CCceEEEeCCCCC-CCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 013840 348 PGANLFIYHIPQE-FGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 426 (435)
Q Consensus 348 ~~~~v~V~nLp~~-~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a 426 (435)
..++|||+|||.. +|+++|+++|+.||.|.+|.| ++|||||+|.+.++|.+|++.|||..|.|++|+|.++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 4589999999999 999999999999999999998 4689999999999999999999999999999999999
Q ss_pred cCCcCCC
Q 013840 427 RDNKQNK 433 (435)
Q Consensus 427 ~~~~~~~ 433 (435)
+.+...+
T Consensus 98 ~~~~~~~ 104 (110)
T 1wf1_A 98 GEPKPDR 104 (110)
T ss_dssp CCCCSCC
T ss_pred CCCCCCC
Confidence 8665544
No 176
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.73 E-value=4.9e-18 Score=128.55 Aligned_cols=79 Identities=27% Similarity=0.530 Sum_probs=71.9
Q ss_pred CCCCceEEEeCCCC-CCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEE
Q 013840 346 GPPGANLFIYHIPQ-EFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 424 (435)
Q Consensus 346 ~~~~~~v~V~nLp~-~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~ 424 (435)
.++.++|||+|||. .+|+++|+++|+.||.|.+|.|. +|||||+|.+.++|.+|+..|||..+.|++|+|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34779999999998 99999999999999999999984 6899999999999999999999999999999999
Q ss_pred EccCCcCC
Q 013840 425 LKRDNKQN 432 (435)
Q Consensus 425 ~a~~~~~~ 432 (435)
+++.+...
T Consensus 79 ~a~~~~~~ 86 (96)
T 2kvi_A 79 VSSSNARP 86 (96)
T ss_dssp EEECCCC-
T ss_pred EcCcCCCC
Confidence 99877654
No 177
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.73 E-value=5.5e-18 Score=133.00 Aligned_cols=81 Identities=21% Similarity=0.345 Sum_probs=75.1
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 427 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a~ 427 (435)
.+++|||+|||..+|+++|+++|+.||.|.+|.|+.+ +.++|||||+|.+.++|.+|+..|||..+.|+.|+|.+++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 5689999999999999999999999999999999865 5569999999999999999999999999999999999998
Q ss_pred CCcC
Q 013840 428 DNKQ 431 (435)
Q Consensus 428 ~~~~ 431 (435)
.+..
T Consensus 84 ~~~~ 87 (115)
T 3lqv_A 84 ANRA 87 (115)
T ss_dssp HHHH
T ss_pred CChh
Confidence 6543
No 178
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.73 E-value=1.1e-18 Score=125.75 Aligned_cols=75 Identities=16% Similarity=0.363 Sum_probs=71.8
Q ss_pred eEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 013840 351 NLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 426 (435)
Q Consensus 351 ~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a 426 (435)
+|||+|||..+|+++|+++|++||+|.+|.++.++.+|.++|||||+|.++++|.+|++. ++..+.|++|+|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 589999999999999999999999999999999988899999999999999999999996 899999999999885
No 179
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.73 E-value=5.5e-18 Score=149.18 Aligned_cols=82 Identities=26% Similarity=0.371 Sum_probs=77.3
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCC--cEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEE
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFG--RVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 425 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG--~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~ 425 (435)
..++|||+|||..+|+++|+++|+.|| .|.+|+|+.++.+|+++|||||+|.+.++|.+||+.||+..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 568999999999999999999999999 999999999988999999999999999999999999999999999999999
Q ss_pred ccCC
Q 013840 426 KRDN 429 (435)
Q Consensus 426 a~~~ 429 (435)
++.+
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8643
No 180
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.73 E-value=3.4e-18 Score=131.11 Aligned_cols=82 Identities=28% Similarity=0.457 Sum_probs=76.2
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 427 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a~ 427 (435)
..++|||+|||..+|+++|+++|+.||.|.+|.|+.++ +|+++|||||+|.+.++|.+|++ ++..++|+.|.|.++.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 56899999999999999999999999999999999997 99999999999999999999999 9999999999999988
Q ss_pred CCcCC
Q 013840 428 DNKQN 432 (435)
Q Consensus 428 ~~~~~ 432 (435)
.+...
T Consensus 85 ~~~~~ 89 (102)
T 2xs2_A 85 RKQNL 89 (102)
T ss_dssp ECC--
T ss_pred cCcch
Confidence 66543
No 181
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=7.9e-18 Score=126.69 Aligned_cols=79 Identities=20% Similarity=0.309 Sum_probs=71.0
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCc-EEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCC-ceeCCeEEEEEE
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGR-VLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNG-CQLGGKKLKVQL 425 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~-v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g-~~l~gr~i~v~~ 425 (435)
..++|||+|||.++|+++|+++|+.||. |..+.+. ++|||||+|.+.++|.+|++.||| ..+.|++|+|++
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 79 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDY 79 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEE
Confidence 5689999999999999999999999999 5555552 368999999999999999999999 999999999999
Q ss_pred ccCCcCCC
Q 013840 426 KRDNKQNK 433 (435)
Q Consensus 426 a~~~~~~~ 433 (435)
++.+....
T Consensus 80 a~~~~~~~ 87 (93)
T 2cqh_A 80 SVSKKLRS 87 (93)
T ss_dssp CCCCCCCC
T ss_pred ccCccccC
Confidence 99886553
No 182
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.73 E-value=3e-17 Score=126.57 Aligned_cols=92 Identities=38% Similarity=0.670 Sum_probs=81.8
Q ss_pred ccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCC
Q 013840 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (435)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~ 87 (435)
.....+.++|||+|||+++|+++|+++|+.||.|..++++.++ ++.++|||||+|.+.++|++||+.||+..+..+..+
T Consensus 9 ~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~ 87 (105)
T 2dnh_A 9 ESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASS 87 (105)
T ss_dssp CCSCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSS
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCc
Confidence 3444678999999999999999999999999999999999998 699999999999999999999999999877666668
Q ss_pred ceeeeccCchhcc
Q 013840 88 PLQVKYADGELER 100 (435)
Q Consensus 88 ~i~~~~~~~~~~~ 100 (435)
.|.+.++.....+
T Consensus 88 ~l~V~~a~~~~~~ 100 (105)
T 2dnh_A 88 SLVVKFADTDKES 100 (105)
T ss_dssp CCEEEESCSSCCC
T ss_pred cEEEEECccCccc
Confidence 8999998765543
No 183
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=6.3e-18 Score=129.71 Aligned_cols=81 Identities=15% Similarity=0.218 Sum_probs=73.6
Q ss_pred CCceEEE--eCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCcee-----CCeE
Q 013840 348 PGANLFI--YHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQL-----GGKK 420 (435)
Q Consensus 348 ~~~~v~V--~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l-----~gr~ 420 (435)
+.++||| +||+.++|+++|+++|++||+|.+|.|+.+ +|||||+|.+.++|.+|++.|||..+ .|+.
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 97 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcE
Confidence 5688999 669999999999999999999999988532 68999999999999999999999998 7899
Q ss_pred EEEEEccCCcCCCC
Q 013840 421 LKVQLKRDNKQNKP 434 (435)
Q Consensus 421 i~v~~a~~~~~~~~ 434 (435)
|+|.|++.....+|
T Consensus 98 l~v~~a~~~p~~~~ 111 (114)
T 2cq2_A 98 LYLNFVEKVQWSGP 111 (114)
T ss_dssp CEEEEESCCCCSSC
T ss_pred EEEEecccCcccCC
Confidence 99999998877666
No 184
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=3e-18 Score=134.74 Aligned_cols=81 Identities=15% Similarity=0.098 Sum_probs=74.3
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCcE----EEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEE
Q 013840 347 PPGANLFIYHIPQEFGDQELGNAFQAFGRV----LSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLK 422 (435)
Q Consensus 347 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v----~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~ 422 (435)
...++|||+|||+++|++||+++|+.||+| ..|.|+.++ +|+++|||||+|.+.++|.+|++. |+..|+||.|+
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 456899999999999999999999999976 689999884 899999999999999999999997 99999999999
Q ss_pred EEEccCC
Q 013840 423 VQLKRDN 429 (435)
Q Consensus 423 v~~a~~~ 429 (435)
|..+..+
T Consensus 99 V~~a~~~ 105 (123)
T 2dha_A 99 LFRSTAA 105 (123)
T ss_dssp CEEECHH
T ss_pred EEECCHH
Confidence 9987543
No 185
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.73 E-value=3.7e-17 Score=134.70 Aligned_cols=121 Identities=21% Similarity=0.386 Sum_probs=101.8
Q ss_pred CCccceEEEEeCCHHHHHHHHHHh-cCCCcCCCCCCceeeeccCch-----------------hccccceEEEecCCCCC
Q 013840 53 RASRGCCFVICPSRQEADKAVNAC-HNKKTLPGASSPLQVKYADGE-----------------LERLEHKLFIGMLPKNV 114 (435)
Q Consensus 53 ~~~~g~afV~f~~~e~a~~al~~l-~~~~~~~~~~~~i~~~~~~~~-----------------~~~~~~~l~v~~lp~~~ 114 (435)
...+|+++|+|.+.++|++|++.+ |+.. ++| .+.+.++... .....++|||+|||+++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~-~~G---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~ 85 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNG-VDG---EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNG 85 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHT-CCC---EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCC
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCC-CCC---ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCC
Confidence 568899999999999999999999 7765 443 6666665432 11225799999999999
Q ss_pred CHHHHHHhhhccCCeeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHHcCCCcCCCCcceEEEEecCCH
Q 013840 115 SEAEVSALFSIYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 184 (435)
Q Consensus 115 t~~~l~~~f~~~g~i~~v~~~~~~~~~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~a~~~ 184 (435)
++++|+++|+.||.|..|.+..+ ++|||||+|.+.++|.+|++.|+|.. +.|+. |.|.++.++
T Consensus 86 t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~-~~g~~--l~v~~a~~~ 148 (150)
T 2i2y_A 86 NKTELERAFGYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRT-LCGCR--VRVELSNGE 148 (150)
T ss_dssp SCHHHHHHHHHHSCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSC-SSSSC--CEEEECCCC
T ss_pred CHHHHHHHHHhhCCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCE-ECCeE--EEEEEcCCC
Confidence 99999999999999999999876 58999999999999999999999976 77776 777777654
No 186
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.73 E-value=3.9e-17 Score=128.30 Aligned_cols=82 Identities=22% Similarity=0.350 Sum_probs=73.1
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceE-EEEEeCCHHHHHHHHHhcCCceeCC--eEEEEE
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCF-GFVSYESPASAQNAIAMMNGCQLGG--KKLKVQ 424 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~-afV~F~~~~~A~~A~~~l~g~~l~g--r~i~v~ 424 (435)
....|||+||++.+|+++|+++|++||+|.+|.|+.+. +|+ |||+|.+.++|.+|++.|||+.|.| ++|+|+
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 34677899999999999999999999999999987652 577 9999999999999999999999988 999999
Q ss_pred EccCCcCCCC
Q 013840 425 LKRDNKQNKP 434 (435)
Q Consensus 425 ~a~~~~~~~~ 434 (435)
|++.+.-.-.
T Consensus 102 ~ak~~~l~v~ 111 (130)
T 3zzy_A 102 FSKLTSLNVK 111 (130)
T ss_dssp ECSCSSCCCC
T ss_pred ecCCCceeEE
Confidence 9998765433
No 187
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.3e-17 Score=126.27 Aligned_cols=80 Identities=30% Similarity=0.321 Sum_probs=73.1
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCcEEEE-EEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSA-KVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 426 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v-~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a 426 (435)
..++|||+|||..+|+++|+++|+.||.|.+| .|+.++.+ |.|||+|.+.++|.+|+..|||..|.|++|+|+++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 56899999999999999999999999999999 48777543 44999999999999999999999999999999999
Q ss_pred cCCcC
Q 013840 427 RDNKQ 431 (435)
Q Consensus 427 ~~~~~ 431 (435)
+.+..
T Consensus 90 ~~~~~ 94 (96)
T 2e44_A 90 PDEMA 94 (96)
T ss_dssp CCCCS
T ss_pred Ccccc
Confidence 98854
No 188
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=5.2e-17 Score=123.14 Aligned_cols=78 Identities=29% Similarity=0.496 Sum_probs=71.8
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 427 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a~ 427 (435)
+.++|||+|| .+|+++|+++|+.||+|.+|.|. +++|||||+|.+.++|.+|+..|||..|.|++|+|.+++
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 85 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 85 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCS
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 5689999996 89999999999999999999984 357899999999999999999999999999999999999
Q ss_pred CCcCCC
Q 013840 428 DNKQNK 433 (435)
Q Consensus 428 ~~~~~~ 433 (435)
.+....
T Consensus 86 ~~~~~~ 91 (97)
T 1x5p_A 86 KQPMLD 91 (97)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 877544
No 189
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.72 E-value=1.7e-17 Score=130.14 Aligned_cols=106 Identities=17% Similarity=0.312 Sum_probs=92.2
Q ss_pred CccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCce
Q 013840 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (435)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i 89 (435)
.+..+++|||+|||+++|+++|+++|+.||.|..+.++.+. .++|||||+|.+.++|.+|++.||+..+ .| +.+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~-~g--~~l 77 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTP---ETRGTAYVVYEDIFDAKNAVDHLSGFNV-SN--RYL 77 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECST---TTTTCEEEEESSHHHHHHHHHHHTTCBS-SS--CBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC---CCCcEEEEEECCHHHHHHHHHHcCCCEE-CC--eEE
Confidence 45677899999999999999999999999999999998764 4589999999999999999999999864 44 889
Q ss_pred eeeccCchhccccceEEEecCCCCCCHHHHHHhhhccCC
Q 013840 90 QVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGT 128 (435)
Q Consensus 90 ~~~~~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~g~ 128 (435)
.+.++.+.... .+++...++++|.++|+.||-
T Consensus 78 ~v~~a~~~~~~-------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 78 VVLYYNANRAF-------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp EEEECCHHHHT-------TTSCHHHHHHHHHHHHHHHCC
T ss_pred EEEEecCChhh-------hhhhHhHhHHHHHHHHHHhCC
Confidence 99998876554 467778899999999999984
No 190
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=8.7e-18 Score=130.56 Aligned_cols=77 Identities=13% Similarity=0.145 Sum_probs=71.6
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 427 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a~ 427 (435)
..++|||+|||..+|+++|+++|++||.|.+|.|+. ++|||||+|.+.++|.+|++.|||..|.|++|+|.|++
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 468999999999999999999999999999999864 46899999999999999999999999999999999998
Q ss_pred CCc
Q 013840 428 DNK 430 (435)
Q Consensus 428 ~~~ 430 (435)
...
T Consensus 83 ~~~ 85 (111)
T 1whx_A 83 IGV 85 (111)
T ss_dssp TTT
T ss_pred CCc
Confidence 653
No 191
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.72 E-value=4.7e-18 Score=133.82 Aligned_cols=79 Identities=16% Similarity=0.246 Sum_probs=72.7
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCcEE--EEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEE
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGRVL--SAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQL 425 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~--~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~ 425 (435)
..++|||+|||+++|+++|+++|+.| .|+ +|.|+.++. |+++|||||+|.++++|.+|++. ++..|+||.|+|..
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVFK 117 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEEE
Confidence 56899999999999999999999999 676 899999975 99999999999999999999995 78999999999998
Q ss_pred ccCC
Q 013840 426 KRDN 429 (435)
Q Consensus 426 a~~~ 429 (435)
+..+
T Consensus 118 a~~~ 121 (126)
T 2hgm_A 118 SSQE 121 (126)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8654
No 192
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.71 E-value=4.4e-17 Score=132.91 Aligned_cols=80 Identities=20% Similarity=0.326 Sum_probs=72.3
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCC--eEEEEEE
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGG--KKLKVQL 425 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~g--r~i~v~~ 425 (435)
...+|||+||++.+|+++|+++|++||+|.+|.|..++ ++|||||+|.+.++|.+|++.|||..|.| ++|+|+|
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 34678999999999999999999999999999996542 57999999999999999999999999965 9999999
Q ss_pred ccCCcC
Q 013840 426 KRDNKQ 431 (435)
Q Consensus 426 a~~~~~ 431 (435)
++.+.-
T Consensus 121 Ak~~~l 126 (164)
T 1sjr_A 121 SKLTSL 126 (164)
T ss_dssp CSSSSC
T ss_pred ecCCcc
Confidence 998753
No 193
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.71 E-value=6.7e-17 Score=123.51 Aligned_cols=82 Identities=20% Similarity=0.236 Sum_probs=73.4
Q ss_pred CCCceEEEeCCCC--C---CCHHHHHHHhhcCCcEEEEEEEeeCCC-CCcceEEEEEeCCHHHHHHHHHhcCCceeCCeE
Q 013840 347 PPGANLFIYHIPQ--E---FGDQELGNAFQAFGRVLSAKVFVDKAT-GVSKCFGFVSYESPASAQNAIAMMNGCQLGGKK 420 (435)
Q Consensus 347 ~~~~~v~V~nLp~--~---~t~~~L~~~F~~fG~v~~v~i~~~~~~-g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~ 420 (435)
.++++|+|+||.. + -++++|+++|++||+|.+|.|+.++.+ ++++|+|||+|.+.++|.+|+..|||+.+.||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4678999999952 2 378999999999999999999988643 689999999999999999999999999999999
Q ss_pred EEEEEccC
Q 013840 421 LKVQLKRD 428 (435)
Q Consensus 421 i~v~~a~~ 428 (435)
|+|.+++.
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999864
No 194
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=4.8e-17 Score=122.55 Aligned_cols=80 Identities=25% Similarity=0.459 Sum_probs=71.6
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 427 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a~ 427 (435)
..++|||+|||..+|+++|+++|+.||.|.+| +.++.+|+ ||||+|.+.++|.+|++ |||..|.|+.|+|.++.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 55799999999999999999999999999987 55555555 99999999999999999 99999999999999998
Q ss_pred CCcCCC
Q 013840 428 DNKQNK 433 (435)
Q Consensus 428 ~~~~~~ 433 (435)
.+....
T Consensus 81 ~~~~~~ 86 (94)
T 2e5g_A 81 QKEFQS 86 (94)
T ss_dssp CSCCCC
T ss_pred cCCCCC
Confidence 776543
No 195
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.71 E-value=2.1e-17 Score=139.43 Aligned_cols=84 Identities=26% Similarity=0.399 Sum_probs=79.5
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 013840 347 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 426 (435)
Q Consensus 347 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a 426 (435)
..+++|||+|||..+|+++|+++|+.||+|.+|.|+.++ +|.++|||||+|.+.++|.+|++.|||..|.|+.|+|.|+
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 357899999999999999999999999999999999997 8999999999999999999999999999999999999999
Q ss_pred cCCcC
Q 013840 427 RDNKQ 431 (435)
Q Consensus 427 ~~~~~ 431 (435)
.....
T Consensus 165 ~~~~~ 169 (177)
T 2f3j_A 165 ASQID 169 (177)
T ss_dssp SSGGG
T ss_pred cCCCC
Confidence 87654
No 196
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.5e-17 Score=123.10 Aligned_cols=89 Identities=22% Similarity=0.323 Sum_probs=79.9
Q ss_pred ccccccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCC
Q 013840 4 SKKEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLP 83 (435)
Q Consensus 4 ~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~ 83 (435)
....+.+..++++|||+|||+++|+++|+++|+.||.|..++++.++.++.++|||||+|.+.++|++|++.||+..+ .
T Consensus 5 ~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~-~ 83 (95)
T 2cqc_A 5 SSGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL-D 83 (95)
T ss_dssp CCCCCCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEE-T
T ss_pred CCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEE-C
Confidence 345567778889999999999999999999999999999999999998899999999999999999999999999754 4
Q ss_pred CCCCceeeeccC
Q 013840 84 GASSPLQVKYAD 95 (435)
Q Consensus 84 ~~~~~i~~~~~~ 95 (435)
| +.|.+.++.
T Consensus 84 g--~~l~v~~a~ 93 (95)
T 2cqc_A 84 G--RRIRVSGPS 93 (95)
T ss_dssp T--EEEEEECCS
T ss_pred C--EEEEEEecC
Confidence 4 888888775
No 197
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.71 E-value=2.6e-18 Score=138.01 Aligned_cols=81 Identities=11% Similarity=0.193 Sum_probs=75.5
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 427 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a~ 427 (435)
..++|||+|||+++|++||+++|+.|| |++|.|+.++ +|+++|||||+|.+.++|.+|+ .+|+..|+||.|+|.++.
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~-~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGP-DGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNS 121 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSS-SSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECC-CCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECC
Confidence 568999999999999999999999999 7799999997 4999999999999999999999 789999999999999988
Q ss_pred CCcC
Q 013840 428 DNKQ 431 (435)
Q Consensus 428 ~~~~ 431 (435)
.+..
T Consensus 122 ~~~~ 125 (139)
T 2hgn_A 122 TTGA 125 (139)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 7654
No 198
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=8.7e-17 Score=121.49 Aligned_cols=85 Identities=25% Similarity=0.443 Sum_probs=77.1
Q ss_pred cCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCceee
Q 013840 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 91 (435)
Q Consensus 12 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~~ 91 (435)
.++++|||+|||+++|+++|+++|+.||.|..++++.++.+++++|||||+|.+.++|++|++.||+..+ .| +.|++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g--~~l~V 79 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFEL-AG--RPMRV 79 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCS-SS--SCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCee-CC--cEEEE
Confidence 5678999999999999999999999999999999999998999999999999999999999999999764 44 88998
Q ss_pred eccCchhc
Q 013840 92 KYADGELE 99 (435)
Q Consensus 92 ~~~~~~~~ 99 (435)
.++.+...
T Consensus 80 ~~a~~~~~ 87 (95)
T 2dnz_A 80 GHVTERLD 87 (95)
T ss_dssp EESSCCCC
T ss_pred EEcccccC
Confidence 88876543
No 199
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=7.8e-17 Score=124.42 Aligned_cols=87 Identities=24% Similarity=0.346 Sum_probs=77.9
Q ss_pred ccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCC
Q 013840 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (435)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~ 87 (435)
.....++++|||+|||+++|+++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|++|++.||+.. +.| +
T Consensus 17 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~ 93 (106)
T 1p27_B 17 PQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQD-LMG--Q 93 (106)
T ss_dssp BCCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCB-SSS--S
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCE-ECC--c
Confidence 3445667899999999999999999999999999999999999999999999999999999999999999975 444 8
Q ss_pred ceeeeccCch
Q 013840 88 PLQVKYADGE 97 (435)
Q Consensus 88 ~i~~~~~~~~ 97 (435)
.|.+.++.+.
T Consensus 94 ~l~V~~a~~~ 103 (106)
T 1p27_B 94 PISVDWCFVR 103 (106)
T ss_dssp BCEEEESEES
T ss_pred EEEEEeecCC
Confidence 8888887654
No 200
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.71 E-value=2.1e-16 Score=123.72 Aligned_cols=76 Identities=24% Similarity=0.263 Sum_probs=68.6
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceE-EEEEeCCHHHHHHHHHhcCCceeCC--eEEEEEEc
Q 013840 350 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCF-GFVSYESPASAQNAIAMMNGCQLGG--KKLKVQLK 426 (435)
Q Consensus 350 ~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~-afV~F~~~~~A~~A~~~l~g~~l~g--r~i~v~~a 426 (435)
..|||+||++.+|+++|+++|++||+|.+|.|+. + .|| |||+|.+.++|..|++.|||..|.| +.|+|.+|
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 4467999999999999999999999999999964 2 276 9999999999999999999999987 69999999
Q ss_pred cCCcC
Q 013840 427 RDNKQ 431 (435)
Q Consensus 427 ~~~~~ 431 (435)
+.+.-
T Consensus 100 k~~~l 104 (124)
T 2e5i_A 100 RPTRL 104 (124)
T ss_dssp SCSCC
T ss_pred cCCcc
Confidence 98754
No 201
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.6e-17 Score=125.60 Aligned_cols=91 Identities=21% Similarity=0.369 Sum_probs=81.3
Q ss_pred ccccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCC
Q 013840 6 KEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGA 85 (435)
Q Consensus 6 ~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~ 85 (435)
....+..+.++|||+|||+++|+++|+++|+.||.|..|+++.++.++.++|||||+|.+.++|++||+.||+..+ .|
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~-~g- 84 (103)
T 2cq0_A 7 GPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGY-DH- 84 (103)
T ss_dssp CSCCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEE-TT-
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCee-CC-
Confidence 4456677889999999999999999999999999999999999988899999999999999999999999999764 44
Q ss_pred CCceeeeccCchhc
Q 013840 86 SSPLQVKYADGELE 99 (435)
Q Consensus 86 ~~~i~~~~~~~~~~ 99 (435)
+.|.+.++.+...
T Consensus 85 -~~l~v~~a~~~~~ 97 (103)
T 2cq0_A 85 -LILNVEWAKPSTN 97 (103)
T ss_dssp -EECEEEESSCCCC
T ss_pred -cEEEEEECCCCCC
Confidence 8899988876543
No 202
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=7.3e-17 Score=124.35 Aligned_cols=91 Identities=24% Similarity=0.352 Sum_probs=81.1
Q ss_pred ccccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCC
Q 013840 6 KEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGA 85 (435)
Q Consensus 6 ~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~ 85 (435)
....+....++|||+|||+++|+++|+++|+.||.|..++++.++.++.++|||||+|.+.++|++|++.|++.. +.|
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g- 84 (105)
T 1x5u_A 7 GPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIK-LYG- 84 (105)
T ss_dssp CCCCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCB-CSS-
T ss_pred CCcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCe-ECC-
Confidence 345566788999999999999999999999999999999999999889999999999999999999999999976 444
Q ss_pred CCceeeeccCchhc
Q 013840 86 SSPLQVKYADGELE 99 (435)
Q Consensus 86 ~~~i~~~~~~~~~~ 99 (435)
+.|.+.++.+...
T Consensus 85 -~~l~v~~a~~~~~ 97 (105)
T 1x5u_A 85 -KPIRVNKASAHNK 97 (105)
T ss_dssp -CBCEEEETTTTSC
T ss_pred -eEEEEEECCCCCc
Confidence 8899998876544
No 203
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.70 E-value=5.7e-17 Score=119.17 Aligned_cols=81 Identities=27% Similarity=0.458 Sum_probs=74.4
Q ss_pred CceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCceeeec
Q 013840 14 RVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKY 93 (435)
Q Consensus 14 ~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~~~~ 93 (435)
+++|||+|||+++++++|+++|+.||.|.+++++.++.++.++|||||+|.+.++|++|++.|++..+ .| +.|.+.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~-~g--~~l~v~~ 77 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDL-NG--RPLRINW 77 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEE-TT--EECEEEE
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCee-CC--cEEEEEe
Confidence 46899999999999999999999999999999999988999999999999999999999999999864 44 8889888
Q ss_pred cCch
Q 013840 94 ADGE 97 (435)
Q Consensus 94 ~~~~ 97 (435)
+.++
T Consensus 78 a~~~ 81 (83)
T 3md1_A 78 AAKL 81 (83)
T ss_dssp CCCC
T ss_pred cCcC
Confidence 8754
No 204
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.70 E-value=7.1e-18 Score=137.81 Aligned_cols=84 Identities=20% Similarity=0.347 Sum_probs=73.7
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEE------EEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeE
Q 013840 347 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSA------KVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKK 420 (435)
Q Consensus 347 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v------~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~ 420 (435)
.++++|||+|||..+|+++|+++|+.||.|.++ .+... .+|+++|||||+|.+.++|.+|+..|||..|.|+.
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~-~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM-KEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE-EETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec-cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 366899999999999999999999999998774 11111 36899999999999999999999999999999999
Q ss_pred EEEEEccCCcC
Q 013840 421 LKVQLKRDNKQ 431 (435)
Q Consensus 421 i~v~~a~~~~~ 431 (435)
|+|.+++.+..
T Consensus 122 l~V~~a~~~~~ 132 (143)
T 3egn_A 122 MVVQFARSARP 132 (143)
T ss_dssp CEEEECCCSCC
T ss_pred EEEEECCCCCC
Confidence 99999987543
No 205
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=1e-16 Score=122.05 Aligned_cols=87 Identities=33% Similarity=0.518 Sum_probs=77.6
Q ss_pred cCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCc
Q 013840 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (435)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~ 88 (435)
.+..+.++|||+|||+++|+++|+++|+.||.|..++++.++.+++++|||||+|.+.++|++||+ +++.. +.| +.
T Consensus 5 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~-~~g--~~ 80 (99)
T 2dgs_A 5 SSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHD-IMG--KK 80 (99)
T ss_dssp CCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCB-SSS--CB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCE-ECC--eE
Confidence 445678999999999999999999999999999999999999899999999999999999999998 88875 444 88
Q ss_pred eeeeccCchhc
Q 013840 89 LQVKYADGELE 99 (435)
Q Consensus 89 i~~~~~~~~~~ 99 (435)
|.+.++.+...
T Consensus 81 l~V~~a~~~~~ 91 (99)
T 2dgs_A 81 VEVKRAEPRDS 91 (99)
T ss_dssp CEEEECCCCCC
T ss_pred EEEEECCCCcc
Confidence 88888876544
No 206
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.70 E-value=1.9e-17 Score=126.13 Aligned_cols=85 Identities=20% Similarity=0.246 Sum_probs=76.3
Q ss_pred cCCceEEEecCCC------CCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCC
Q 013840 12 EERVKLFVGQVPK------HMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGA 85 (435)
Q Consensus 12 ~~~~~l~v~nLp~------~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~ 85 (435)
..+++|||+|||+ ++++++|+++|++||.|.+++++.++.|++++|||||+|.+.++|++||+.||+..+.++
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~- 82 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK- 82 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSS-
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCC-
Confidence 4568999999999 999999999999999999999999999999999999999999999999999999875322
Q ss_pred CCceeeeccCchh
Q 013840 86 SSPLQVKYADGEL 98 (435)
Q Consensus 86 ~~~i~~~~~~~~~ 98 (435)
+.|++.++.+..
T Consensus 83 -r~l~V~~a~~~~ 94 (100)
T 3ns6_A 83 -HRLFLYTMKDVE 94 (100)
T ss_dssp -CBCEEEESHHHH
T ss_pred -eEEEEEECchhh
Confidence 788888876543
No 207
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=7.7e-17 Score=123.73 Aligned_cols=92 Identities=25% Similarity=0.387 Sum_probs=81.3
Q ss_pred ccccccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCC
Q 013840 4 SKKEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLP 83 (435)
Q Consensus 4 ~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~ 83 (435)
+..++....+.++|||+|||+++|+++|+++|+.||.|..++++.+ ++.++|||||+|.+.++|.+|++.||+..+ .
T Consensus 5 ~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~-~ 81 (103)
T 2d9p_A 5 SSGDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIV-A 81 (103)
T ss_dssp CCCCCCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBS-S
T ss_pred CCCCccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEe-C
Confidence 4456677788999999999999999999999999999999999998 689999999999999999999999999864 4
Q ss_pred CCCCceeeeccCchhcc
Q 013840 84 GASSPLQVKYADGELER 100 (435)
Q Consensus 84 ~~~~~i~~~~~~~~~~~ 100 (435)
+ +.|.+.++.+....
T Consensus 82 g--~~l~V~~a~~~~~~ 96 (103)
T 2d9p_A 82 T--KPLYVALAQRKEER 96 (103)
T ss_dssp S--SBCEEEECSSCCCC
T ss_pred C--cEEEEEEecccccC
Confidence 4 88999888765443
No 208
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.70 E-value=4.3e-17 Score=121.13 Aligned_cols=75 Identities=27% Similarity=0.366 Sum_probs=70.3
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 427 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a~ 427 (435)
..++|||+|||..+|+++|+++|++| +|.++.|. +++|||||+|.++++|.+|++.|||..+.|++|+|+++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 46899999999999999999999999 99999884 468999999999999999999999999999999999987
Q ss_pred CC
Q 013840 428 DN 429 (435)
Q Consensus 428 ~~ 429 (435)
..
T Consensus 77 ~~ 78 (88)
T 1wg1_A 77 TD 78 (88)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 209
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.70 E-value=1e-16 Score=123.81 Aligned_cols=87 Identities=25% Similarity=0.463 Sum_probs=78.6
Q ss_pred ccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCC
Q 013840 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (435)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~ 87 (435)
.....+.++|||+|||+++|+++|+++|+.||.|..++++.++.++.++|||||+|.+.++|.+|++.|++.. +.| +
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~-i~g--~ 96 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE-LAG--R 96 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCC-SSS--S
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCE-ECC--E
Confidence 4556778999999999999999999999999999999999998889999999999999999999999999975 444 8
Q ss_pred ceeeeccCch
Q 013840 88 PLQVKYADGE 97 (435)
Q Consensus 88 ~i~~~~~~~~ 97 (435)
.|++.++.++
T Consensus 97 ~l~V~~a~~k 106 (108)
T 2jrs_A 97 PMKVGHVTER 106 (108)
T ss_dssp CCEEECSCSS
T ss_pred EEEEEEcccC
Confidence 8888887654
No 210
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.70 E-value=2.6e-17 Score=122.92 Aligned_cols=81 Identities=15% Similarity=0.246 Sum_probs=69.4
Q ss_pred ceEEEecCCCCCCHHHHHHHHhccC--ceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCceeee
Q 013840 15 VKLFVGQVPKHMTEAQLLAMFKEFA--LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVK 92 (435)
Q Consensus 15 ~~l~v~nLp~~~t~~~l~~~f~~~g--~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~~~ 92 (435)
.+|||+|||+++|+++|+++|+.|| .|.+++++.++.+++++|||||+|.+.++|++|++.||+..+ .| +.|++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~-~g--r~i~V~ 78 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKREL-HG--QNPVVT 78 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCS-SS--CCCEEC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCee-CC--EEEEEE
Confidence 5899999999999999999999999 999999999999999999999999999999999999999864 44 888888
Q ss_pred ccCchh
Q 013840 93 YADGEL 98 (435)
Q Consensus 93 ~~~~~~ 98 (435)
++.+..
T Consensus 79 ~~~~~~ 84 (90)
T 3p5t_L 79 PSNKLE 84 (90)
T ss_dssp CC----
T ss_pred ECCCCc
Confidence 876543
No 211
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.70 E-value=6.1e-17 Score=120.20 Aligned_cols=82 Identities=24% Similarity=0.445 Sum_probs=73.5
Q ss_pred cCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCceee
Q 013840 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 91 (435)
Q Consensus 12 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~~ 91 (435)
.+.++|||+|||+++|+++|+++|+.||.|.+++++.++.++.++|||||+|.+.++|++|++.||+.. +.| +.|.+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g--~~l~v 80 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQW-LGG--RQIRT 80 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCE-ETT--EECEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCE-ECC--eEEEE
Confidence 467899999999999999999999999999999999998889999999999999999999999999975 444 88888
Q ss_pred eccCc
Q 013840 92 KYADG 96 (435)
Q Consensus 92 ~~~~~ 96 (435)
.++.+
T Consensus 81 ~~a~~ 85 (87)
T 3bs9_A 81 NWATR 85 (87)
T ss_dssp EEEC-
T ss_pred EecCC
Confidence 88764
No 212
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=6.7e-17 Score=123.11 Aligned_cols=87 Identities=23% Similarity=0.264 Sum_probs=78.5
Q ss_pred CccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCce
Q 013840 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (435)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i 89 (435)
...++++|||+|||+++|+++|+++|+.||.|..++++.++.++.++|||||+|.+.++|++|++.||+..+ .+ +.|
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g--~~l 80 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVF-QG--RML 80 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEES-SS--CEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEE-CC--cEE
Confidence 456789999999999999999999999999999999999998899999999999999999999999999754 44 889
Q ss_pred eeeccCchhc
Q 013840 90 QVKYADGELE 99 (435)
Q Consensus 90 ~~~~~~~~~~ 99 (435)
.+.++.+...
T Consensus 81 ~V~~a~~~~~ 90 (99)
T 1whw_A 81 HVLPSTIKKE 90 (99)
T ss_dssp EEEECCCCST
T ss_pred EEEEcCCCcc
Confidence 9988876544
No 213
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.70 E-value=7.1e-17 Score=126.60 Aligned_cols=90 Identities=23% Similarity=0.333 Sum_probs=80.0
Q ss_pred cccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCC
Q 013840 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (435)
Q Consensus 7 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~ 86 (435)
......+.++|||+|||+++|+++|+++|+.||.|..++++.++.+++++|||||+|.+.++|++||+.||+..+ .+
T Consensus 18 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g-- 94 (115)
T 2cpz_A 18 SQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQI-GM-- 94 (115)
T ss_dssp CCCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEE-TT--
T ss_pred cCcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEE-CC--
Confidence 345556779999999999999999999999999999999999998899999999999999999999999999764 44
Q ss_pred CceeeeccCchhc
Q 013840 87 SPLQVKYADGELE 99 (435)
Q Consensus 87 ~~i~~~~~~~~~~ 99 (435)
+.|++.++.+...
T Consensus 95 ~~l~V~~a~~~~~ 107 (115)
T 2cpz_A 95 KRLKVQLKRSKND 107 (115)
T ss_dssp EECEEECCCCSCC
T ss_pred EEEEEEEcCCCCc
Confidence 8899988876543
No 214
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=1.3e-16 Score=123.50 Aligned_cols=91 Identities=29% Similarity=0.440 Sum_probs=80.3
Q ss_pred ccccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEec-CCCCCccceEEEEeCCHHHHHHHHHHh-cCCCcCC
Q 013840 6 KEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKD-KTTRASRGCCFVICPSRQEADKAVNAC-HNKKTLP 83 (435)
Q Consensus 6 ~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~g~afV~f~~~e~a~~al~~l-~~~~~~~ 83 (435)
.........++|||+|||+++|+++|+++|+.||.|..|+++.+ +.++.++|||||+|.+.++|++||+.| |+.. +.
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~-~~ 85 (107)
T 2cph_A 7 GQVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTH-LY 85 (107)
T ss_dssp CSSCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCB-SS
T ss_pred cccccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCe-EC
Confidence 44556778899999999999999999999999999999999998 778999999999999999999999999 7775 44
Q ss_pred CCCCceeeeccCchhc
Q 013840 84 GASSPLQVKYADGELE 99 (435)
Q Consensus 84 ~~~~~i~~~~~~~~~~ 99 (435)
| +.|.+.++.+...
T Consensus 86 g--~~l~v~~a~~~~~ 99 (107)
T 2cph_A 86 G--RRLVLEWADSEVT 99 (107)
T ss_dssp S--CBCEEEECCCCCC
T ss_pred C--CEEEEEeCCCCCC
Confidence 4 8889888876543
No 215
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.70 E-value=6.8e-17 Score=119.34 Aligned_cols=81 Identities=23% Similarity=0.382 Sum_probs=74.1
Q ss_pred ccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCcee
Q 013840 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (435)
Q Consensus 11 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~ 90 (435)
..+.++|||+|||+++++++|+++|++||.|..++++.++.++.++|||||+|.+.++|++|++.||+..+ .| +.|+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g--~~l~ 80 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL-FG--RTIR 80 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEE-TT--EECE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEE-CC--cEEE
Confidence 46789999999999999999999999999999999999988899999999999999999999999999864 44 7888
Q ss_pred eecc
Q 013840 91 VKYA 94 (435)
Q Consensus 91 ~~~~ 94 (435)
+.++
T Consensus 81 v~~a 84 (85)
T 3mdf_A 81 VNLA 84 (85)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 7765
No 216
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.70 E-value=9.2e-17 Score=128.13 Aligned_cols=89 Identities=22% Similarity=0.353 Sum_probs=79.9
Q ss_pred cccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCC
Q 013840 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (435)
Q Consensus 7 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~ 86 (435)
...++.++++|||+|||+++|+++|+++|+.||.|..|+++.++.+++++|||||+|.+.++|++||+.|++.. +.|
T Consensus 39 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~-i~g-- 115 (129)
T 2kxn_B 39 NRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGME-LDG-- 115 (129)
T ss_dssp CSSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCC-SSS--
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCE-ECC--
Confidence 35566788999999999999999999999999999999999999899999999999999999999999999975 444
Q ss_pred CceeeeccCchh
Q 013840 87 SPLQVKYADGEL 98 (435)
Q Consensus 87 ~~i~~~~~~~~~ 98 (435)
+.|++.++.++.
T Consensus 116 ~~l~V~~a~~~~ 127 (129)
T 2kxn_B 116 RRIRVDFSITKR 127 (129)
T ss_dssp SCCEESCCSSSS
T ss_pred EEEEEEEecCCC
Confidence 889998887543
No 217
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.70 E-value=8e-17 Score=121.87 Aligned_cols=83 Identities=20% Similarity=0.316 Sum_probs=75.7
Q ss_pred CCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCceeee
Q 013840 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVK 92 (435)
Q Consensus 13 ~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~~~ 92 (435)
++++|||+|||+++++++|+++|+.||.|.+++++.++.++.++|||||+|.+.++|.+|++.|++.. +.| +.|.+.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~-~~g--~~l~V~ 77 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQ-LGS--RFLKCG 77 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCE-ETT--EECEEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCe-ECC--eEEEEE
Confidence 46899999999999999999999999999999999998889999999999999999999999999975 444 888888
Q ss_pred ccCchh
Q 013840 93 YADGEL 98 (435)
Q Consensus 93 ~~~~~~ 98 (435)
++.+..
T Consensus 78 ~a~~~~ 83 (96)
T 2x1f_A 78 YSSNSD 83 (96)
T ss_dssp ECSCSS
T ss_pred EcCCCC
Confidence 887544
No 218
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=1e-16 Score=122.32 Aligned_cols=87 Identities=18% Similarity=0.324 Sum_probs=78.0
Q ss_pred ccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCC
Q 013840 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (435)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~ 87 (435)
.....+.++|||+|||+++|+++|+++|+.||.|..++++.++ +++++|||||+|.+.++|++|++.||+.. +.| +
T Consensus 11 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~ 86 (100)
T 2do4_A 11 YSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMT-IKE--N 86 (100)
T ss_dssp CSSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEE-SSS--C
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCE-ECC--E
Confidence 4455778999999999999999999999999999999999998 79999999999999999999999999975 444 8
Q ss_pred ceeeeccCchh
Q 013840 88 PLQVKYADGEL 98 (435)
Q Consensus 88 ~i~~~~~~~~~ 98 (435)
.|.+.++.+..
T Consensus 87 ~l~v~~a~~~~ 97 (100)
T 2do4_A 87 IIKVAISNSGP 97 (100)
T ss_dssp EEEEEECCCCS
T ss_pred EEEEEECCCCC
Confidence 89998887654
No 219
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.70 E-value=1e-16 Score=125.77 Aligned_cols=92 Identities=23% Similarity=0.419 Sum_probs=81.8
Q ss_pred ccccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCC
Q 013840 6 KEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGA 85 (435)
Q Consensus 6 ~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~ 85 (435)
....+..+.++|||+|||+++|+++|+++|+.||.|..|+++.++.++.++|||||+|.+.++|++||+.|++.. +.|
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g- 84 (115)
T 2dgo_A 7 GQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQW-LGG- 84 (115)
T ss_dssp SSCCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCE-ETT-
T ss_pred cCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCE-ECC-
Confidence 445667788999999999999999999999999999999999998889999999999999999999999999975 444
Q ss_pred CCceeeeccCchhcc
Q 013840 86 SSPLQVKYADGELER 100 (435)
Q Consensus 86 ~~~i~~~~~~~~~~~ 100 (435)
+.|.+.++......
T Consensus 85 -~~l~V~~a~~~~~~ 98 (115)
T 2dgo_A 85 -RQIRTNWATRKPPA 98 (115)
T ss_dssp -EECEEEESSCCCCC
T ss_pred -EEEEEEEccCCCCC
Confidence 88899888765443
No 220
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.69 E-value=1.7e-16 Score=120.82 Aligned_cols=84 Identities=21% Similarity=0.393 Sum_probs=76.1
Q ss_pred ccCccCCceEEEecCCCCCCHHHHHHHHhccCceeE--------EEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCC
Q 013840 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDE--------VNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNK 79 (435)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~--------~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~ 79 (435)
.......++|||+|||+++|+++|+++|++||.|.. ++++.++.+++++|||||+|.+.++|++|++.||+.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 455677899999999999999999999999999999 999999989999999999999999999999999998
Q ss_pred CcCCCCCCceeeecc
Q 013840 80 KTLPGASSPLQVKYA 94 (435)
Q Consensus 80 ~~~~~~~~~i~~~~~ 94 (435)
.+ .| +.|++.++
T Consensus 87 ~~-~g--~~l~V~~A 98 (99)
T 2la6_A 87 EF-SG--NPIKVSFA 98 (99)
T ss_dssp BS-SS--SBCEEEEC
T ss_pred Ee-CC--cEEEEEec
Confidence 64 44 78887765
No 221
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.1e-16 Score=124.71 Aligned_cols=92 Identities=23% Similarity=0.321 Sum_probs=81.1
Q ss_pred cccccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhc------C
Q 013840 5 KKEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACH------N 78 (435)
Q Consensus 5 ~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~------~ 78 (435)
+.......+.++|||+|||+++|+++|+++|+.||.|..|+++.++.++.++|||||+|.+.++|.+||+.|+ +
T Consensus 6 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~ 85 (111)
T 1x4h_A 6 SGLPSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGG 85 (111)
T ss_dssp CCCCCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCC
T ss_pred CCCCCcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCC
Confidence 3445566788999999999999999999999999999999999999899999999999999999999999998 7
Q ss_pred CCcCCCCCCceeeeccCchhc
Q 013840 79 KKTLPGASSPLQVKYADGELE 99 (435)
Q Consensus 79 ~~~~~~~~~~i~~~~~~~~~~ 99 (435)
.. +.| +.|.+.++.+...
T Consensus 86 ~~-~~g--~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 86 LK-LDG--RQLKVDLAVTRDE 103 (111)
T ss_dssp EE-SSS--CEEEEECCCCCCC
T ss_pred cE-EcC--EEEEEEECCCCcc
Confidence 64 444 8899988876543
No 222
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.69 E-value=7e-17 Score=119.94 Aligned_cols=77 Identities=18% Similarity=0.378 Sum_probs=63.3
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCce--eCCeEEEEE
Q 013840 347 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQ--LGGKKLKVQ 424 (435)
Q Consensus 347 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~--l~gr~i~v~ 424 (435)
.+.++|||+|||.++|+++|+++|++||+|.+|.|+++ ++|||||+|.++++|.+ +++.. +.|++|.|.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~ 79 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHIS 79 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEE
Confidence 36789999999999999999999999999999999864 68999999999999983 45555 459999999
Q ss_pred EccCCcCC
Q 013840 425 LKRDNKQN 432 (435)
Q Consensus 425 ~a~~~~~~ 432 (435)
+|+.+...
T Consensus 80 ~a~~k~~~ 87 (89)
T 3d2w_A 80 NAEPKHNK 87 (89)
T ss_dssp ECC-----
T ss_pred EcCCCCcC
Confidence 99987643
No 223
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=7.6e-17 Score=121.89 Aligned_cols=83 Identities=17% Similarity=0.322 Sum_probs=70.9
Q ss_pred cCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCC-CcCCCCCC
Q 013840 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNK-KTLPGASS 87 (435)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~-~~~~~~~~ 87 (435)
-++.+.++|||+|||+++|+++|+++|++||.|.+|+++++ +|||||+|.+.++|++|++.|++. ..+.| +
T Consensus 11 ~~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~G--r 82 (105)
T 1sjq_A 11 GSGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRG--Q 82 (105)
T ss_dssp -CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETT--E
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECC--E
Confidence 45678899999999999999999999999999999999875 579999999999999999988753 23444 8
Q ss_pred ceeeeccCchhc
Q 013840 88 PLQVKYADGELE 99 (435)
Q Consensus 88 ~i~~~~~~~~~~ 99 (435)
.|++.++..+..
T Consensus 83 ~l~V~~A~~~~~ 94 (105)
T 1sjq_A 83 PIYIQFSNHKEL 94 (105)
T ss_dssp ECCBCCCSSSSC
T ss_pred EEEEEEcCCCCC
Confidence 999998876543
No 224
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=9.4e-17 Score=122.28 Aligned_cols=86 Identities=27% Similarity=0.431 Sum_probs=76.9
Q ss_pred cCccCCceEEEecCCCCCCHHHHHHHHhccCcee-EEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCC
Q 013840 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVD-EVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (435)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~-~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~ 87 (435)
....++++|||+|||+++|+++|+++|+.||.|. +++++.++.++.++|||||+|.+.++|++|++.||+.. +.+ +
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~ 80 (99)
T 2div_A 4 GSSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKP-LPG--A 80 (99)
T ss_dssp CCCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSE-ESS--C
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCc-cCC--C
Confidence 4566789999999999999999999999999999 99999999899999999999999999999999999975 444 4
Q ss_pred c----eeeeccCch
Q 013840 88 P----LQVKYADGE 97 (435)
Q Consensus 88 ~----i~~~~~~~~ 97 (435)
. |++.|+.+.
T Consensus 81 ~~~~~l~v~~a~~~ 94 (99)
T 2div_A 81 TPAKRFKLNYATYS 94 (99)
T ss_dssp SSCEECCEEETTCC
T ss_pred CcceeEEEeecCCC
Confidence 4 888887654
No 225
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.1e-16 Score=122.61 Aligned_cols=88 Identities=28% Similarity=0.427 Sum_probs=78.1
Q ss_pred ccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCC
Q 013840 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (435)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~ 87 (435)
.....+.++|||+|||+++|+++|+++|+.||.|..++++.++.++.++|||||+|.+.++|++|++.||+..+ .+ +
T Consensus 6 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~-~g--~ 82 (102)
T 1x5s_A 6 SGMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV-DG--R 82 (102)
T ss_dssp CCCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCT-TS--C
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEE-CC--e
Confidence 34456789999999999999999999999999999999999988899999999999999999999999999864 44 7
Q ss_pred ceeeeccCchh
Q 013840 88 PLQVKYADGEL 98 (435)
Q Consensus 88 ~i~~~~~~~~~ 98 (435)
.|++.++.+..
T Consensus 83 ~l~v~~a~~~~ 93 (102)
T 1x5s_A 83 QIRVDQAGKSS 93 (102)
T ss_dssp CCEEEEEECCC
T ss_pred EEEEEECCCCC
Confidence 88888876543
No 226
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=8.6e-17 Score=123.45 Aligned_cols=88 Identities=25% Similarity=0.349 Sum_probs=78.9
Q ss_pred ccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCC
Q 013840 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (435)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~ 87 (435)
..+..+.++|||+|||+++|+++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|++|++.||+.. +.| +
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g--~ 83 (103)
T 2dnm_A 7 GPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAE-LDG--R 83 (103)
T ss_dssp SSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCC-BTT--B
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCE-ECC--c
Confidence 4455678999999999999999999999999999999999999899999999999999999999999999976 444 8
Q ss_pred ceeeeccCchh
Q 013840 88 PLQVKYADGEL 98 (435)
Q Consensus 88 ~i~~~~~~~~~ 98 (435)
.|.+.++....
T Consensus 84 ~l~V~~a~~~~ 94 (103)
T 2dnm_A 84 ELRVQVARYGR 94 (103)
T ss_dssp CCEEEECSSCC
T ss_pred EEEEEECCcCC
Confidence 88888887543
No 227
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.8e-16 Score=121.96 Aligned_cols=88 Identities=23% Similarity=0.385 Sum_probs=77.7
Q ss_pred cCccCCceEEEecCCCCCCHHHHHHHHhc-cCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCC
Q 013840 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKE-FALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (435)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~-~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~ 87 (435)
.+..+.++|||+|||+++|+++|+++|+. ||.|..++++.++ ++.++|||||+|.+.++|.+|++.|++...+.| +
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g--~ 80 (104)
T 2dhg_A 4 GSSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGS--K 80 (104)
T ss_dssp CCSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSS--S
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCC--E
Confidence 45567899999999999999999999999 9999999999999 899999999999999999999999999762444 7
Q ss_pred ceeeeccCchhc
Q 013840 88 PLQVKYADGELE 99 (435)
Q Consensus 88 ~i~~~~~~~~~~ 99 (435)
.|.+.++.+...
T Consensus 81 ~l~v~~a~~~~~ 92 (104)
T 2dhg_A 81 PVRLSVAIPKAS 92 (104)
T ss_dssp CCCCCBCCCCCS
T ss_pred eEEEEEccCCCc
Confidence 888888765433
No 228
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=6.5e-17 Score=123.91 Aligned_cols=90 Identities=20% Similarity=0.283 Sum_probs=80.0
Q ss_pred cccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCC
Q 013840 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (435)
Q Consensus 7 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~ 86 (435)
......+.++|||+|||+++|+++|+++|+.||.|..++++.++.++.++|||||+|.+.++|++|++.||+..+ . +
T Consensus 5 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~-~--g 81 (102)
T 2cqb_A 5 SSGMATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL-F--G 81 (102)
T ss_dssp SSCSCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEE-T--T
T ss_pred cCCcCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE-C--C
Confidence 344556789999999999999999999999999999999999988999999999999999999999999999754 4 4
Q ss_pred CceeeeccCchhc
Q 013840 87 SPLQVKYADGELE 99 (435)
Q Consensus 87 ~~i~~~~~~~~~~ 99 (435)
+.|.+.++.+...
T Consensus 82 ~~l~V~~a~~~~~ 94 (102)
T 2cqb_A 82 RTIRVNLAKPMRI 94 (102)
T ss_dssp EEEEEEECCCCCC
T ss_pred cEEEEEeCCCCCC
Confidence 8899988876544
No 229
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.4e-16 Score=121.57 Aligned_cols=83 Identities=18% Similarity=0.290 Sum_probs=73.2
Q ss_pred cCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCc
Q 013840 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (435)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~ 88 (435)
......++|||+|||+++|+++|+++|+.||+|.+|.++.++. +.++|||||+|.+.++|.+||+ +++.. +.| +.
T Consensus 6 ~~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~-~~g--r~ 80 (103)
T 1s79_A 6 KNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQK-YKE--TD 80 (103)
T ss_dssp SSCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCC-CTT--TT
T ss_pred cccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCE-ECC--EE
Confidence 4556779999999999999999999999999999999999987 9999999999999999999998 77764 444 77
Q ss_pred eeeeccCc
Q 013840 89 LQVKYADG 96 (435)
Q Consensus 89 i~~~~~~~ 96 (435)
|.+.+...
T Consensus 81 l~V~~~~~ 88 (103)
T 1s79_A 81 LLILFKDD 88 (103)
T ss_dssp CEEEEHHH
T ss_pred EEEEEchH
Confidence 87776643
No 230
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=7e-17 Score=122.28 Aligned_cols=85 Identities=24% Similarity=0.403 Sum_probs=77.0
Q ss_pred cCCceEEEecCCCCCCHHHHHHHHhccCceeEE-EEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCcee
Q 013840 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEV-NIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (435)
Q Consensus 12 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~-~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~ 90 (435)
.++++|||+|||+++|+++|+++|+.||.|..+ +++.++.++.++|||||+|.+.++|++|++.||+..+ . ++.|.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~-~--g~~l~ 79 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL-C--NRPIT 79 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEE-T--TEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEE-C--CEEEE
Confidence 568999999999999999999999999999999 9999988899999999999999999999999999864 4 48899
Q ss_pred eeccCchhc
Q 013840 91 VKYADGELE 99 (435)
Q Consensus 91 ~~~~~~~~~ 99 (435)
+.++.+...
T Consensus 80 v~~a~~~~~ 88 (96)
T 1x5t_A 80 VSYAFKKDS 88 (96)
T ss_dssp EEESCCCCC
T ss_pred EEEecccCC
Confidence 988876544
No 231
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.68 E-value=1.4e-16 Score=123.78 Aligned_cols=88 Identities=20% Similarity=0.271 Sum_probs=78.4
Q ss_pred ccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCC
Q 013840 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (435)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~ 87 (435)
.....++++|||+|||+++|+++|+++|+.||.|..++++.++.++.++|||||+|.+.++|.+|++.||+..+ .| +
T Consensus 20 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~-~g--~ 96 (110)
T 1oo0_B 20 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI-MG--Q 96 (110)
T ss_dssp BCCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEE-TT--E
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE-CC--c
Confidence 34456678999999999999999999999999999999999988899999999999999999999999999864 44 8
Q ss_pred ceeeeccCchh
Q 013840 88 PLQVKYADGEL 98 (435)
Q Consensus 88 ~i~~~~~~~~~ 98 (435)
.|.+.++.+..
T Consensus 97 ~l~V~~a~~~~ 107 (110)
T 1oo0_B 97 TIQVDWCFVKG 107 (110)
T ss_dssp ECEEEESEESS
T ss_pred EEEEEEcccCC
Confidence 89988886543
No 232
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.4e-16 Score=120.12 Aligned_cols=84 Identities=26% Similarity=0.468 Sum_probs=75.7
Q ss_pred ccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCC
Q 013840 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (435)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~ 87 (435)
.....+.++|||+|||+++++++|+++|+.||.|..++++.++.++.++|||||+|.+.++|++|++.||+..+ .| +
T Consensus 10 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~-~g--~ 86 (94)
T 2e5h_A 10 GGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQL-FG--R 86 (94)
T ss_dssp CSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEE-TT--E
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCee-CC--c
Confidence 44567789999999999999999999999999999999999998899999999999999999999999998754 33 7
Q ss_pred ceeeecc
Q 013840 88 PLQVKYA 94 (435)
Q Consensus 88 ~i~~~~~ 94 (435)
.|.+.++
T Consensus 87 ~l~v~~a 93 (94)
T 2e5h_A 87 VIKASIA 93 (94)
T ss_dssp EEEEEEC
T ss_pred EEEEEec
Confidence 8887765
No 233
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=7.5e-17 Score=124.06 Aligned_cols=88 Identities=25% Similarity=0.370 Sum_probs=78.3
Q ss_pred cCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCc
Q 013840 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (435)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~ 88 (435)
..+...++|||+|||+++++++|+++|+.||.|..++++.++.++.++|||||+|.+.++|++|++.||+..+ .| +.
T Consensus 3 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g--~~ 79 (104)
T 1p1t_A 3 AVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREF-SG--RA 79 (104)
T ss_dssp CSHHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSC-SS--SC
T ss_pred CcCCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCee-CC--cE
Confidence 3455678999999999999999999999999999999999988899999999999999999999999999764 44 88
Q ss_pred eeeeccCchhc
Q 013840 89 LQVKYADGELE 99 (435)
Q Consensus 89 i~~~~~~~~~~ 99 (435)
|.+.++.+...
T Consensus 80 l~v~~a~~~~~ 90 (104)
T 1p1t_A 80 LRVDNAASEKN 90 (104)
T ss_dssp BEEEETTCTTH
T ss_pred EEEEeCCCccc
Confidence 88888876543
No 234
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.68 E-value=2.3e-16 Score=123.53 Aligned_cols=85 Identities=28% Similarity=0.443 Sum_probs=76.2
Q ss_pred CccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCce
Q 013840 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (435)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i 89 (435)
+..+.++|||+|||+++|+++|+++|+.||.|..|.++.++ ++.++|||||+|.+.++|++|++.|++..+ .| +.|
T Consensus 3 e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~-~g--~~l 78 (116)
T 2fy1_A 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSL-HG--KAI 78 (116)
T ss_dssp TTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBC-SS--SBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEE-CC--EEE
Confidence 34567899999999999999999999999999999999998 799999999999999999999999999864 44 888
Q ss_pred eeeccCchh
Q 013840 90 QVKYADGEL 98 (435)
Q Consensus 90 ~~~~~~~~~ 98 (435)
.+.++....
T Consensus 79 ~V~~a~~~~ 87 (116)
T 2fy1_A 79 KVEQAKKPS 87 (116)
T ss_dssp EEEECCCSS
T ss_pred EEEECCCCC
Confidence 888886544
No 235
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=7.5e-17 Score=119.10 Aligned_cols=81 Identities=22% Similarity=0.254 Sum_probs=72.3
Q ss_pred ccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCcee
Q 013840 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (435)
Q Consensus 11 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~ 90 (435)
..++++|||+|||+++++++|+++|+.||.|..++++.++.++.++|||||+|.+.++|++|++.||+..+ .| +.++
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g--~~~~ 78 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGV-QA--QMAK 78 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTC-CE--ESCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeE-ee--EEEe
Confidence 35688999999999999999999999999999999999988999999999999999999999999998754 33 6666
Q ss_pred eecc
Q 013840 91 VKYA 94 (435)
Q Consensus 91 ~~~~ 94 (435)
+.++
T Consensus 79 ~~~~ 82 (85)
T 1x4e_A 79 QSGP 82 (85)
T ss_dssp SSCC
T ss_pred ecCC
Confidence 6554
No 236
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.67 E-value=2.2e-16 Score=118.08 Aligned_cols=84 Identities=18% Similarity=0.287 Sum_probs=70.6
Q ss_pred ccccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCc-CCC
Q 013840 6 KEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKT-LPG 84 (435)
Q Consensus 6 ~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~-~~~ 84 (435)
++.....++++|||+|||+++|+++|+++|++||.|.+++++++ +|+|||+|.+.++|++|++.|++..+ +.|
T Consensus 13 ~~~~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~G 86 (100)
T 3r27_A 13 DDPHKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAG 86 (100)
T ss_dssp ----CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETT
T ss_pred cccccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCC
Confidence 45566678999999999999999999999999999999998753 57999999999999999999988652 344
Q ss_pred CCCceeeeccCch
Q 013840 85 ASSPLQVKYADGE 97 (435)
Q Consensus 85 ~~~~i~~~~~~~~ 97 (435)
+.|.+.++..+
T Consensus 87 --r~i~V~~S~~k 97 (100)
T 3r27_A 87 --HPAFVNYSTSQ 97 (100)
T ss_dssp --EEEEEEECSCS
T ss_pred --cEEEEEecccc
Confidence 89999988754
No 237
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=1.6e-16 Score=120.83 Aligned_cols=85 Identities=22% Similarity=0.324 Sum_probs=75.6
Q ss_pred cCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCC---CCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCc
Q 013840 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKT---TRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (435)
Q Consensus 12 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~---~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~ 88 (435)
.+.++|||+|||+++|+++|+++|+.||.|..+++..++. ++.++|||||+|.+.++|++|++.||+.. +.+ +.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~ 79 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHT-VDG--HK 79 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCE-ETT--EE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCe-eCC--eE
Confidence 4678999999999999999999999999999999998876 66899999999999999999999999975 444 88
Q ss_pred eeeeccCchhc
Q 013840 89 LQVKYADGELE 99 (435)
Q Consensus 89 i~~~~~~~~~~ 99 (435)
|.+.++.....
T Consensus 80 l~V~~a~~~~~ 90 (98)
T 2cpf_A 80 LEVRISERATK 90 (98)
T ss_dssp CEEECSSCSSC
T ss_pred EEEEEccCCCC
Confidence 89988876543
No 238
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.8e-16 Score=123.84 Aligned_cols=89 Identities=24% Similarity=0.289 Sum_probs=79.2
Q ss_pred ccCccCCceEEEecCCCCCCHHHHHHHHhccCcee--------EEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCC
Q 013840 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVD--------EVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNK 79 (435)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~--------~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~ 79 (435)
..+..+.++|||+|||+++|+++|+++|+.||.|. .|+++.++.++.++|||||+|.+.++|++||+.||+.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 88 (113)
T 2cpe_A 9 PDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGK 88 (113)
T ss_dssp CCCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTC
T ss_pred cccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCC
Confidence 44567889999999999999999999999999998 6999999889999999999999999999999999998
Q ss_pred CcCCCCCCceeeeccCchhc
Q 013840 80 KTLPGASSPLQVKYADGELE 99 (435)
Q Consensus 80 ~~~~~~~~~i~~~~~~~~~~ 99 (435)
.+ .| +.|.+.++.....
T Consensus 89 ~~-~g--~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 89 DF-QG--SKLKVSLARKKPP 105 (113)
T ss_dssp EE-TT--EECEEECSSCCCC
T ss_pred cc-CC--CEEEEEECCCCCC
Confidence 64 34 8889888876543
No 239
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.67 E-value=2e-16 Score=117.37 Aligned_cols=84 Identities=26% Similarity=0.417 Sum_probs=71.7
Q ss_pred cccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCC
Q 013840 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (435)
Q Consensus 7 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~ 86 (435)
...++.+.++|||+|||+++|+++|+++|+.||.|.+++++.++.+++++|||||+|.+.++|.+|++. ++.. +.|
T Consensus 4 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~-~~g-- 79 (87)
T 3s7r_A 4 ASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHR-LDG-- 79 (87)
T ss_dssp ---CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEE-ETT--
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCE-ECC--
Confidence 345667889999999999999999999999999999999999998999999999999999999999965 5543 544
Q ss_pred Cceeeecc
Q 013840 87 SPLQVKYA 94 (435)
Q Consensus 87 ~~i~~~~~ 94 (435)
+.|.++++
T Consensus 80 ~~i~v~~A 87 (87)
T 3s7r_A 80 RVIDPKKA 87 (87)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEeC
Confidence 77776653
No 240
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.67 E-value=1.5e-16 Score=125.45 Aligned_cols=85 Identities=24% Similarity=0.334 Sum_probs=75.9
Q ss_pred cccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCC
Q 013840 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (435)
Q Consensus 7 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~ 86 (435)
...+..+.++|||+|||+++|+++|+++|++||.|..++++.++.+++++|||||+|.+.++|++|++.||+.. +.|
T Consensus 33 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g-- 109 (118)
T 2khc_A 33 KQIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQ-VGT-- 109 (118)
T ss_dssp SSCCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCE-ETT--
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCE-ECC--
Confidence 34556778999999999999999999999999999999999998889999999999999999999999999976 444
Q ss_pred Cceeeecc
Q 013840 87 SPLQVKYA 94 (435)
Q Consensus 87 ~~i~~~~~ 94 (435)
+.|++.++
T Consensus 110 ~~l~V~~a 117 (118)
T 2khc_A 110 KRLKVQLK 117 (118)
T ss_dssp EECCEEEC
T ss_pred EEEEEEec
Confidence 77777765
No 241
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.4e-16 Score=123.76 Aligned_cols=88 Identities=30% Similarity=0.436 Sum_probs=78.7
Q ss_pred ccccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCC
Q 013840 6 KEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGA 85 (435)
Q Consensus 6 ~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~ 85 (435)
.....+...++|||+|||+++|+++|+++|+.||.|..|+++.++.+++++|||||+|.+.++|++||+.+++ .+.+
T Consensus 9 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~--~~~g- 85 (116)
T 2cqd_A 9 HGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP--IIDG- 85 (116)
T ss_dssp CCCCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC--EETT-
T ss_pred CCCcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC--cCCC-
Confidence 3456677889999999999999999999999999999999999998999999999999999999999999987 3555
Q ss_pred CCceeeeccCch
Q 013840 86 SSPLQVKYADGE 97 (435)
Q Consensus 86 ~~~i~~~~~~~~ 97 (435)
+.|.+.++...
T Consensus 86 -~~l~V~~a~~~ 96 (116)
T 2cqd_A 86 -RKANVNLAYLG 96 (116)
T ss_dssp -EECEEEESTTT
T ss_pred -EEEEEEEcccC
Confidence 88888888543
No 242
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.7e-16 Score=119.14 Aligned_cols=89 Identities=19% Similarity=0.299 Sum_probs=74.5
Q ss_pred cccccccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCC-Cc
Q 013840 3 ESKKEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNK-KT 81 (435)
Q Consensus 3 ~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~-~~ 81 (435)
.+..++....++++|||+|||+++|+++|+++|++||.|.+++++.+ +|||||+|.+.++|.+|++.|++. ..
T Consensus 4 ~s~~~~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~ 77 (101)
T 2cq1_A 4 GSSGDKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPH 77 (101)
T ss_dssp CCCCCCCCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCE
T ss_pred CCCCCCccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCce
Confidence 35566777788999999999999999999999999999999988765 579999999999999999987632 23
Q ss_pred CCCCCCceeeeccCchhc
Q 013840 82 LPGASSPLQVKYADGELE 99 (435)
Q Consensus 82 ~~~~~~~i~~~~~~~~~~ 99 (435)
+.| +.|.+.++.....
T Consensus 78 ~~G--r~l~V~~a~~~~~ 93 (101)
T 2cq1_A 78 LRN--QPIYIQYSNHKEL 93 (101)
T ss_dssp ETT--EECEEEECSCSSC
T ss_pred ECC--cEEEEEEcCcccC
Confidence 444 8999998875443
No 243
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.6e-16 Score=122.16 Aligned_cols=86 Identities=15% Similarity=0.325 Sum_probs=73.0
Q ss_pred ccccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCC-CcCCC
Q 013840 6 KEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNK-KTLPG 84 (435)
Q Consensus 6 ~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~-~~~~~ 84 (435)
+......++++|||+|||+++|+++|+++|++||.|.+|+++.+ +|||||+|.+.++|.+|++.+++. ..+.|
T Consensus 23 ~~~~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~G 96 (119)
T 2ad9_A 23 DSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRG 96 (119)
T ss_dssp CTTSCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTT
T ss_pred cccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 44566678899999999999999999999999999999999875 579999999999999999998752 23444
Q ss_pred CCCceeeeccCchhc
Q 013840 85 ASSPLQVKYADGELE 99 (435)
Q Consensus 85 ~~~~i~~~~~~~~~~ 99 (435)
+.|++.++..+..
T Consensus 97 --r~l~V~~a~~k~~ 109 (119)
T 2ad9_A 97 --QPIYIQFSNHKEL 109 (119)
T ss_dssp --BCCEEEECSSSSC
T ss_pred --eEEEEEEccCCCC
Confidence 8999998875543
No 244
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.66 E-value=3e-16 Score=118.49 Aligned_cols=84 Identities=20% Similarity=0.315 Sum_probs=74.4
Q ss_pred ccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCC
Q 013840 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (435)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~ 87 (435)
.....+.++|||+|||+++++++|+++|+.||.|..+++..++. +.++|||||+|.+.++|++|++.||+..+ .| +
T Consensus 10 ~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g--~ 85 (95)
T 2ywk_A 10 PAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRL-YG--R 85 (95)
T ss_dssp --CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEE-TT--E
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEE-CC--C
Confidence 44566789999999999999999999999999999999999986 89999999999999999999999999764 44 8
Q ss_pred ceeeeccC
Q 013840 88 PLQVKYAD 95 (435)
Q Consensus 88 ~i~~~~~~ 95 (435)
.|.+.++.
T Consensus 86 ~l~V~~a~ 93 (95)
T 2ywk_A 86 PINVSGPS 93 (95)
T ss_dssp ECEEECCC
T ss_pred EEEEEEcC
Confidence 88887764
No 245
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3e-16 Score=120.57 Aligned_cols=89 Identities=15% Similarity=0.297 Sum_probs=77.8
Q ss_pred ccccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCC-CCccceEEEEeCCHHHHHHHHHHhcCCCcCCC
Q 013840 6 KEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTT-RASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (435)
Q Consensus 6 ~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~-~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~ 84 (435)
.......+.++|||+|||+++|+++|+++|+.|| |..|+++.++.+ +.++|||||+|.+.++|++|| .|++.. +.+
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~-~~g 83 (104)
T 1wi8_A 7 GSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEES-LGN 83 (104)
T ss_dssp CCCCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCE-ETT
T ss_pred CCCCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCE-eCC
Confidence 3445556789999999999999999999999999 999999999887 899999999999999999999 999876 444
Q ss_pred CCCceeeeccCchhc
Q 013840 85 ASSPLQVKYADGELE 99 (435)
Q Consensus 85 ~~~~i~~~~~~~~~~ 99 (435)
+.|.+.++.+...
T Consensus 84 --~~l~V~~a~~~~~ 96 (104)
T 1wi8_A 84 --KRIRVDVADQAQD 96 (104)
T ss_dssp --EECEEEECCCCCC
T ss_pred --cEEEEEEccCCCC
Confidence 8888888876544
No 246
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=5.2e-16 Score=118.31 Aligned_cols=88 Identities=14% Similarity=0.156 Sum_probs=74.1
Q ss_pred cccccccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCC-c
Q 013840 3 ESKKEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKK-T 81 (435)
Q Consensus 3 ~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~-~ 81 (435)
++..+.....++++|||+|||+++++++|+++|++||.|.+++++++ +|||||+|.+.++|.+|++.|++.. .
T Consensus 4 ~~~~~~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~ 77 (104)
T 1wex_A 4 GSSGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVY 77 (104)
T ss_dssp SCCCSCCCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCB
T ss_pred CCCCCCCcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCce
Confidence 34555667788999999999999999999999999999999998764 5799999999999999999987643 2
Q ss_pred CCCCCCceeeeccCchh
Q 013840 82 LPGASSPLQVKYADGEL 98 (435)
Q Consensus 82 ~~~~~~~i~~~~~~~~~ 98 (435)
+.| +.|.+.++..+.
T Consensus 78 i~G--r~l~V~~a~~~~ 92 (104)
T 1wex_A 78 IAG--QQAFFNYSTSKR 92 (104)
T ss_dssp SSS--SBCEEEECSSSS
T ss_pred ECC--EEEEEEEccCcc
Confidence 444 889999887543
No 247
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.66 E-value=2.4e-16 Score=129.92 Aligned_cols=83 Identities=22% Similarity=0.339 Sum_probs=74.7
Q ss_pred CCceEEEecCCCCCCHHHHHHHHhccC--ceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCcee
Q 013840 13 ERVKLFVGQVPKHMTEAQLLAMFKEFA--LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (435)
Q Consensus 13 ~~~~l~v~nLp~~~t~~~l~~~f~~~g--~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~ 90 (435)
..++|||+|||+++|+++|+++|+.|| .|.+|+++.|+.+++++|||||+|.+.++|.+||+.||+.. +.| +.|.
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~-~~G--r~l~ 130 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKV-LNG--EKVD 130 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCE-ETT--EECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCE-ECC--eEeE
Confidence 568999999999999999999999999 99999999999999999999999999999999999999986 444 8899
Q ss_pred eeccCchh
Q 013840 91 VKYADGEL 98 (435)
Q Consensus 91 ~~~~~~~~ 98 (435)
+.++.+..
T Consensus 131 V~~a~~~~ 138 (156)
T 3n9u_C 131 VRPATRQN 138 (156)
T ss_dssp EEECCHHH
T ss_pred EEEcCCCc
Confidence 88886543
No 248
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.66 E-value=3.4e-16 Score=120.05 Aligned_cols=88 Identities=23% Similarity=0.454 Sum_probs=77.6
Q ss_pred cccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCC
Q 013840 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (435)
Q Consensus 7 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~ 86 (435)
......+.++|||+|||+++|+++|+++|+.|| |..|+++.++.+++++|||||+|.+.++|++|| .||+.. +.|
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~-~~g-- 82 (103)
T 2dng_A 8 KELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGAL-LGD-- 82 (103)
T ss_dssp CCCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCE-ETT--
T ss_pred CCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCe-ECC--
Confidence 345567789999999999999999999999997 999999999989999999999999999999999 899875 444
Q ss_pred CceeeeccCchhc
Q 013840 87 SPLQVKYADGELE 99 (435)
Q Consensus 87 ~~i~~~~~~~~~~ 99 (435)
+.|.+.++.+...
T Consensus 83 ~~l~V~~a~~~~~ 95 (103)
T 2dng_A 83 RSLRVDIAEGRKQ 95 (103)
T ss_dssp EECEEEECCCCCC
T ss_pred eEEEEEEecCCCC
Confidence 8888888876543
No 249
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.66 E-value=2.2e-16 Score=124.31 Aligned_cols=79 Identities=29% Similarity=0.486 Sum_probs=71.2
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEc
Q 013840 347 PPGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLK 426 (435)
Q Consensus 347 ~~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a 426 (435)
...++|||+|| ++|+++|+++|+.||+|.+|.|. .++|||||+|.+.++|.+|++.|||..|.|+.|+|.|+
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 36789999996 69999999999999999999985 35799999999999999999999999999999999999
Q ss_pred cCCcCCC
Q 013840 427 RDNKQNK 433 (435)
Q Consensus 427 ~~~~~~~ 433 (435)
+.+....
T Consensus 109 ~~~~~~~ 115 (121)
T 2bz2_A 109 RKQPMLD 115 (121)
T ss_dssp CSSCC--
T ss_pred CCCCCCC
Confidence 9886544
No 250
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.66 E-value=1.1e-16 Score=125.14 Aligned_cols=76 Identities=16% Similarity=0.282 Sum_probs=67.0
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeE-----EE
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKK-----LK 422 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~-----i~ 422 (435)
..++|||+|||.++|+++|+++|++||+|.+|.|+.+ |||||+|.+.++|.+|++.|||..|.|++ |+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 4689999999999999999999999999999999754 89999999999999999999999999988 88
Q ss_pred EEEccCCc
Q 013840 423 VQLKRDNK 430 (435)
Q Consensus 423 v~~a~~~~ 430 (435)
|..++.+.
T Consensus 88 v~~~~~~~ 95 (115)
T 3beg_B 88 VKVDGPRS 95 (115)
T ss_dssp EEECC---
T ss_pred eccCCCCC
Confidence 88776654
No 251
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=1.5e-16 Score=124.33 Aligned_cols=77 Identities=17% Similarity=0.281 Sum_probs=66.0
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCC---CCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEE
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKAT---GVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 424 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~---g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~ 424 (435)
..++|||+|||.++|+++|+++|++||+|. +.++.++.+ |+++|||||+|.++++|.+|++.|+ .+.|+.|.+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~ 83 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCV 83 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEec
Confidence 568999999999999999999999999999 888877666 7999999999999999999999983 2556655555
Q ss_pred Ecc
Q 013840 425 LKR 427 (435)
Q Consensus 425 ~a~ 427 (435)
.+.
T Consensus 84 ~~~ 86 (114)
T 2dnl_A 84 SSP 86 (114)
T ss_dssp CCS
T ss_pred cCC
Confidence 443
No 252
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.66 E-value=2.1e-16 Score=120.83 Aligned_cols=89 Identities=26% Similarity=0.385 Sum_probs=75.3
Q ss_pred ceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCceeeecc
Q 013840 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYA 94 (435)
Q Consensus 15 ~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~~~~~ 94 (435)
++|||+|||+++|+++|+++|++||.|..++++.+ ++|||||+|.+.++|++|++.|++.. +.| +.+.+.++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~l~V~~a 72 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKV-ICG--SRVRVELS 72 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSC-SSS--CCCEEEES
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCe-ECC--cEEEEEEc
Confidence 58999999999999999999999999999999877 67899999999999999999999876 444 77888887
Q ss_pred Cchhccc-----------cceEEEecCC
Q 013840 95 DGELERL-----------EHKLFIGMLP 111 (435)
Q Consensus 95 ~~~~~~~-----------~~~l~v~~lp 111 (435)
....... ..+|||+||+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 73 TGMPRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp SSCCCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred cCCCCcccCCCCCccccCCCceecCCCC
Confidence 6544221 4568888875
No 253
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=6.8e-16 Score=120.76 Aligned_cols=88 Identities=24% Similarity=0.426 Sum_probs=76.9
Q ss_pred ccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCC---
Q 013840 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG--- 84 (435)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~--- 84 (435)
.....+.++|||+|||+++|+++|+++|+.||.|..++++.++ ++.++|||||+|.+.++|.+|++.||+..+...
T Consensus 19 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~ 97 (114)
T 1x5o_A 19 KQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGV 97 (114)
T ss_dssp SCCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTS
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccc
Confidence 3445678999999999999999999999999999999999998 799999999999999999999999999865221
Q ss_pred --CCCceeeeccCc
Q 013840 85 --ASSPLQVKYADG 96 (435)
Q Consensus 85 --~~~~i~~~~~~~ 96 (435)
..+++.+.|+.+
T Consensus 98 ~~~~~~l~v~~a~p 111 (114)
T 1x5o_A 98 SAPTEPLLCKFSGP 111 (114)
T ss_dssp CCCSSCBEEEECCC
T ss_pred cCCCCceeEEccCC
Confidence 347788888764
No 254
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.66 E-value=2.3e-16 Score=117.37 Aligned_cols=83 Identities=14% Similarity=0.355 Sum_probs=73.5
Q ss_pred cCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCC-ccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCcee
Q 013840 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRA-SRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (435)
Q Consensus 12 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~-~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~ 90 (435)
...++|||+|||+++|+++|+++|+.||.|..+.++.++.++. ++|||||+|.+.++|++|++.||+..+ .| +.|.
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g--~~l~ 78 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQI-DG--QEIT 78 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEE-TT--EECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeE-CC--eEEE
Confidence 3568999999999999999999999999999999999887666 899999999999999999999999864 44 7888
Q ss_pred eeccCch
Q 013840 91 VKYADGE 97 (435)
Q Consensus 91 ~~~~~~~ 97 (435)
+.++.+.
T Consensus 79 v~~a~~~ 85 (88)
T 4a8x_A 79 ATAVLAP 85 (88)
T ss_dssp EEEECCC
T ss_pred EEECCCC
Confidence 8877543
No 255
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=7.9e-16 Score=118.04 Aligned_cols=90 Identities=24% Similarity=0.411 Sum_probs=78.1
Q ss_pred cccccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCC
Q 013840 5 KKEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (435)
Q Consensus 5 ~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~ 84 (435)
........+.++|||+|||+++|+++|+++|+.||.|..|+++.++. .++|||||+|.+.++|++|++.||+.. +.|
T Consensus 6 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g 82 (103)
T 2cq3_A 6 SGNSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTV-VEG 82 (103)
T ss_dssp CCCSCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCE-ETT
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCE-ECC
Confidence 34456677889999999999999999999999999999999998874 389999999999999999999999986 444
Q ss_pred CCCceeeeccCchhc
Q 013840 85 ASSPLQVKYADGELE 99 (435)
Q Consensus 85 ~~~~i~~~~~~~~~~ 99 (435)
+.|.+.++.+...
T Consensus 83 --~~l~v~~a~~~~~ 95 (103)
T 2cq3_A 83 --RKIEVNNATARVM 95 (103)
T ss_dssp --EECEEEECCSSCC
T ss_pred --EEEEEEEcccCCC
Confidence 8888888876543
No 256
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.66 E-value=3.6e-16 Score=127.00 Aligned_cols=90 Identities=27% Similarity=0.405 Sum_probs=79.7
Q ss_pred ccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCC
Q 013840 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (435)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~ 87 (435)
..+....++|||+|||+++|+++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|.+|++.||+..+ .| +
T Consensus 36 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g--~ 112 (139)
T 1u6f_A 36 NPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNI-LN--K 112 (139)
T ss_dssp SCCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEEC-SS--C
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE-CC--e
Confidence 34556779999999999999999999999999999999999998899999999999999999999999999764 44 8
Q ss_pred ceeeeccCchhcc
Q 013840 88 PLQVKYADGELER 100 (435)
Q Consensus 88 ~i~~~~~~~~~~~ 100 (435)
.|++.++......
T Consensus 113 ~l~v~~a~~~~~~ 125 (139)
T 1u6f_A 113 RLKVALAASGHQR 125 (139)
T ss_dssp EEEEEESSCCCCC
T ss_pred EEEEEECCCCCCC
Confidence 8999888765443
No 257
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.66 E-value=2.4e-16 Score=122.04 Aligned_cols=87 Identities=24% Similarity=0.341 Sum_probs=72.3
Q ss_pred ccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCC
Q 013840 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (435)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~ 87 (435)
.++..+.++|||+|||+++|+++|+++|+.||.|.+|+++.++.++.++|||||+|.+.++|.+||+.++ ..+.| +
T Consensus 19 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~--~~l~g--~ 94 (109)
T 2rs2_A 19 SHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR--HELDS--K 94 (109)
T ss_dssp -------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC--EEETT--E
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC--CcCCC--E
Confidence 4566778999999999999999999999999999999999999899999999999999999999999864 34555 8
Q ss_pred ceeeeccCchh
Q 013840 88 PLQVKYADGEL 98 (435)
Q Consensus 88 ~i~~~~~~~~~ 98 (435)
.|.+.++.+..
T Consensus 95 ~l~V~~a~~~~ 105 (109)
T 2rs2_A 95 TIDPKVAFPRR 105 (109)
T ss_dssp EEEEEECCCCC
T ss_pred EEEEEEccCCC
Confidence 88888876544
No 258
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.65 E-value=2.2e-16 Score=117.68 Aligned_cols=82 Identities=20% Similarity=0.323 Sum_probs=74.0
Q ss_pred cCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCceee
Q 013840 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 91 (435)
Q Consensus 12 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~~ 91 (435)
.+.++|||+|||+++|+++|+++|+.||.|..++++.++.++.++|||||+|.+.++|++|+ .+++.. +.| +.|.+
T Consensus 4 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~-~~g--~~l~V 79 (89)
T 3ucg_A 4 ADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESL-FRG--RQIKV 79 (89)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCE-ETT--EECEE
T ss_pred CcCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCE-ECC--cEEEE
Confidence 35689999999999999999999999999999999999888999999999999999999999 899876 444 88888
Q ss_pred eccCch
Q 013840 92 KYADGE 97 (435)
Q Consensus 92 ~~~~~~ 97 (435)
.++.+.
T Consensus 80 ~~a~~~ 85 (89)
T 3ucg_A 80 IPKRTN 85 (89)
T ss_dssp EETTTT
T ss_pred EEccCC
Confidence 887653
No 259
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.65 E-value=1.3e-16 Score=128.03 Aligned_cols=88 Identities=22% Similarity=0.376 Sum_probs=77.4
Q ss_pred ccCccCCceEEEecCCCCCCHHHHHHHHhccCceeE--EEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCC----Cc
Q 013840 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDE--VNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNK----KT 81 (435)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~--~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~----~~ 81 (435)
.......++|||+|||+++|+++|+++|+.||.|.. |+++.|+.+++++|||||+|.+. +|.+|++.||+. .+
T Consensus 17 ~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~ 95 (131)
T 2m2b_A 17 PSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTI 95 (131)
T ss_dssp CCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCG
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccC
Confidence 445577899999999999999999999999999976 99999999999999999999999 999999999997 43
Q ss_pred CCCCCCceeeeccCchhc
Q 013840 82 LPGASSPLQVKYADGELE 99 (435)
Q Consensus 82 ~~~~~~~i~~~~~~~~~~ 99 (435)
. ++.|.+.++.+...
T Consensus 96 -~--gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 96 -D--GKTINVEFAKGSKR 110 (131)
T ss_dssp -G--GCCCCCEECCCSCC
T ss_pred -C--CEEEEEEECCCCCC
Confidence 3 48888888866533
No 260
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=6.3e-16 Score=118.57 Aligned_cols=88 Identities=22% Similarity=0.409 Sum_probs=76.9
Q ss_pred cccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCC
Q 013840 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (435)
Q Consensus 7 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~ 86 (435)
...+..+.++|||+|||+++|+++|+++|+.||.|..|+++.++. .++|||||+|.+.++|++|++.|++..+ .|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g-- 82 (103)
T 2cqi_A 8 MMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKI-LG-- 82 (103)
T ss_dssp CCCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEE-TT--
T ss_pred CCCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCc-CC--
Confidence 345667889999999999999999999999999999999999864 3689999999999999999999999864 44
Q ss_pred CceeeeccCchhc
Q 013840 87 SPLQVKYADGELE 99 (435)
Q Consensus 87 ~~i~~~~~~~~~~ 99 (435)
+.|.+.++.+...
T Consensus 83 ~~l~V~~a~~~~~ 95 (103)
T 2cqi_A 83 KEVKVNWATTPSS 95 (103)
T ss_dssp EEEEEEECCCTTC
T ss_pred CeEEEEECCCCcc
Confidence 8899998876543
No 261
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.65 E-value=2.8e-16 Score=112.97 Aligned_cols=75 Identities=13% Similarity=0.130 Sum_probs=66.1
Q ss_pred cCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCceee
Q 013840 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 91 (435)
Q Consensus 12 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~~ 91 (435)
-.+.-|||+||++.+|+++|+++|.+||+|.++++.. ++|||||+|.+.++|.+|++.||+..+ .| ++|++
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l-~g--r~I~V 75 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVL-AN--TTIFA 75 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEE-TT--EEEEE
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEE-CC--cEEEE
Confidence 3577899999999999999999999999999999854 678999999999999999999999764 43 78887
Q ss_pred eccC
Q 013840 92 KYAD 95 (435)
Q Consensus 92 ~~~~ 95 (435)
+++.
T Consensus 76 ~~A~ 79 (89)
T 2wbr_A 76 ESPS 79 (89)
T ss_dssp ECCC
T ss_pred EECC
Confidence 7663
No 262
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.65 E-value=5.2e-16 Score=119.96 Aligned_cols=84 Identities=20% Similarity=0.312 Sum_probs=74.7
Q ss_pred ccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCC
Q 013840 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (435)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~ 87 (435)
.....+.++|||+|||+.+|+++|+++|+.||.|..++++.++ +++++|||||+|.+.++|++|++.||+..+ .| +
T Consensus 23 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g--~ 98 (107)
T 3ulh_A 23 GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPL-DG--R 98 (107)
T ss_dssp -CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEE-TT--E
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEe-CC--c
Confidence 3445678999999999999999999999999999999999999 899999999999999999999999999864 44 7
Q ss_pred ceeeeccC
Q 013840 88 PLQVKYAD 95 (435)
Q Consensus 88 ~i~~~~~~ 95 (435)
.|.+.++.
T Consensus 99 ~l~V~~a~ 106 (107)
T 3ulh_A 99 PMNIQLVT 106 (107)
T ss_dssp ECEEEEEC
T ss_pred EEEEEEeC
Confidence 88877654
No 263
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.65 E-value=6.3e-16 Score=123.29 Aligned_cols=89 Identities=22% Similarity=0.300 Sum_probs=78.7
Q ss_pred ccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCC
Q 013840 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (435)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~ 87 (435)
.....+.++|||+|||+++|+++|+++|+.||.|..|.++.++.++.++|||||+|.+.++|++||+.||+..+ .| +
T Consensus 16 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g--~ 92 (126)
T 3ex7_B 16 PQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL-MG--Q 92 (126)
T ss_dssp BCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBS-SS--S
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCee-CC--e
Confidence 34556678999999999999999999999999999999999988899999999999999999999999999864 44 8
Q ss_pred ceeeeccCchhc
Q 013840 88 PLQVKYADGELE 99 (435)
Q Consensus 88 ~i~~~~~~~~~~ 99 (435)
.|.+.++.+...
T Consensus 93 ~l~v~~a~~~~~ 104 (126)
T 3ex7_B 93 PISVDWCFVRGP 104 (126)
T ss_dssp BCEEEESEESSS
T ss_pred EEEEEEecCCCC
Confidence 888888865443
No 264
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.65 E-value=9.2e-16 Score=115.06 Aligned_cols=84 Identities=25% Similarity=0.331 Sum_probs=74.2
Q ss_pred CccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCce
Q 013840 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (435)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i 89 (435)
...+.++|||+|||+++++++|+++|+.||.|..+++..+ ++.++|||||+|.+.++|++|++.|++.. +.| +.|
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~-~~g--~~l 78 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMK-LSG--REI 78 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCC-BTT--BCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCE-ECC--cEE
Confidence 3567899999999999999999999999999999999884 68899999999999999999999999976 444 788
Q ss_pred eeeccCchh
Q 013840 90 QVKYADGEL 98 (435)
Q Consensus 90 ~~~~~~~~~ 98 (435)
.+.++.+..
T Consensus 79 ~v~~a~~~~ 87 (92)
T 2dgv_A 79 DVRIDRNAS 87 (92)
T ss_dssp CCEECSCCS
T ss_pred EEEEcCCCC
Confidence 888876543
No 265
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.65 E-value=2.8e-16 Score=112.94 Aligned_cols=75 Identities=29% Similarity=0.433 Sum_probs=67.3
Q ss_pred eEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCceeeecc
Q 013840 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYA 94 (435)
Q Consensus 16 ~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~~~~~ 94 (435)
+|||+|||+++|+++|+++|+.||.|.+++++.++.+++++|||||+|.+.++|++|++ +++.. +.| +.+.+.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~-~~g--~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHE-INN--KMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCC-SSS--CCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCE-ECC--EEEEEEeC
Confidence 58999999999999999999999999999999999889999999999999999999997 77765 444 77777653
No 266
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=2.1e-16 Score=114.25 Aligned_cols=76 Identities=28% Similarity=0.429 Sum_probs=68.7
Q ss_pred ceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCceeeecc
Q 013840 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYA 94 (435)
Q Consensus 15 ~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~~~~~ 94 (435)
++|||+|||+++|+++|+++|++||.|..+.++.++.+++++|||||+|.+.++|.+|++.++ . .+.| +.+.+.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~-~~~g--~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-H-ELDS--KTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-C-CCSS--CCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-C-ccCC--EEEEEEec
Confidence 589999999999999999999999999999999999889999999999999999999999987 4 4555 67776654
No 267
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.3e-16 Score=124.90 Aligned_cols=87 Identities=22% Similarity=0.345 Sum_probs=77.0
Q ss_pred cCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCc
Q 013840 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (435)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~ 88 (435)
.++...++|||+|||+++|+++|+++|+.||.|..|+++.++.++.++|||||+|.+.++|++|| .||+..+ .| +.
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~-~g--~~ 95 (114)
T 2cq4_A 20 PEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRL-LG--VP 95 (114)
T ss_dssp TTHHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEE-TT--EE
T ss_pred cccCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEe-CC--eE
Confidence 34456789999999999999999999999999999999999989999999999999999999999 9998754 44 88
Q ss_pred eeeeccCchhc
Q 013840 89 LQVKYADGELE 99 (435)
Q Consensus 89 i~~~~~~~~~~ 99 (435)
|.+.++.+...
T Consensus 96 l~V~~a~~~~~ 106 (114)
T 2cq4_A 96 IIVQASQAEKN 106 (114)
T ss_dssp EEEEEHHHHHH
T ss_pred EEEEecCCCcc
Confidence 99888765443
No 268
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=2.9e-16 Score=120.92 Aligned_cols=89 Identities=27% Similarity=0.331 Sum_probs=78.5
Q ss_pred cccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCC
Q 013840 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (435)
Q Consensus 7 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~ 86 (435)
...+..+.++|||+|||+++|+++|+++|+.||.|..|+++.++.++.++|||||+|.+.++|++||+. ++.. +.|
T Consensus 9 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~-~~g-- 84 (105)
T 2dh8_A 9 NNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHT-LDG-- 84 (105)
T ss_dssp CCCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEE-ETT--
T ss_pred CcCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCe-ECC--
Confidence 345667889999999999999999999999999999999999988999999999999999999999998 7764 444
Q ss_pred CceeeeccCchhc
Q 013840 87 SPLQVKYADGELE 99 (435)
Q Consensus 87 ~~i~~~~~~~~~~ 99 (435)
+.|.+.++.+...
T Consensus 85 ~~l~V~~a~~~~~ 97 (105)
T 2dh8_A 85 RNIDPKPCTPRGM 97 (105)
T ss_dssp EEEBCCCSCCSSC
T ss_pred EEEEEEEccCCCC
Confidence 8888888865543
No 269
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=7.3e-16 Score=116.45 Aligned_cols=84 Identities=21% Similarity=0.202 Sum_probs=73.8
Q ss_pred cCccCCceEEEecCCCCCCHHHHH----HHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCC
Q 013840 9 KSSEERVKLFVGQVPKHMTEAQLL----AMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (435)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~t~~~l~----~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~ 84 (435)
....+.++|||+|||+++++++|+ ++|++||.|.+++++.++.+ +|||||+|.+.++|++|++.||+..+ .|
T Consensus 4 ~~~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~-~g 79 (96)
T 2dgx_A 4 GSSGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKI-GS 79 (96)
T ss_dssp CCCSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEE-TT
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEE-CC
Confidence 344567899999999999999999 99999999999999998864 88999999999999999999999864 44
Q ss_pred CCCceeeeccCchh
Q 013840 85 ASSPLQVKYADGEL 98 (435)
Q Consensus 85 ~~~~i~~~~~~~~~ 98 (435)
+.|++.++.+..
T Consensus 80 --r~l~V~~a~~~~ 91 (96)
T 2dgx_A 80 --KKILVSLATGAS 91 (96)
T ss_dssp --EEEEEEECCCSS
T ss_pred --eEEEEEEcCCCC
Confidence 889998886543
No 270
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.64 E-value=2.3e-16 Score=119.13 Aligned_cols=83 Identities=16% Similarity=0.210 Sum_probs=72.0
Q ss_pred CccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCce
Q 013840 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (435)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i 89 (435)
.....++|||+|||+++|+++|+++|++||.|..++++.++.++.++|||||+|.+.++|++|++.||+..+ .+ +.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~-~g--r~l 87 (95)
T 2ek1_A 11 GKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPI-GS--RKV 87 (95)
T ss_dssp ----CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEE-TT--EEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeE-CC--cEE
Confidence 345568999999999999999999999999999899999888899999999999999999999999999764 44 788
Q ss_pred eeeccC
Q 013840 90 QVKYAD 95 (435)
Q Consensus 90 ~~~~~~ 95 (435)
++.++.
T Consensus 88 ~v~~a~ 93 (95)
T 2ek1_A 88 KLSGPS 93 (95)
T ss_dssp EEECCC
T ss_pred EEEecc
Confidence 877654
No 271
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1.1e-15 Score=119.52 Aligned_cols=86 Identities=21% Similarity=0.256 Sum_probs=76.4
Q ss_pred ccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCC
Q 013840 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (435)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~ 87 (435)
......+++|||+|||+++|+++|+++|+.||.|..++++.++ ++.++|||||+|.+.++|++|++.||+..+ .+ +
T Consensus 9 ~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g--~ 84 (114)
T 2do0_A 9 LQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLL-FD--R 84 (114)
T ss_dssp CCCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEE-TT--E
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEe-CC--C
Confidence 4455678999999999999999999999999999999999998 489999999999999999999999999864 44 8
Q ss_pred ceeeeccCch
Q 013840 88 PLQVKYADGE 97 (435)
Q Consensus 88 ~i~~~~~~~~ 97 (435)
.|.+.++...
T Consensus 85 ~l~v~~a~~~ 94 (114)
T 2do0_A 85 PMHVKMDERA 94 (114)
T ss_dssp ECEEEECSCC
T ss_pred EEEEEEcccC
Confidence 8888887643
No 272
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.64 E-value=2.9e-16 Score=119.60 Aligned_cols=85 Identities=15% Similarity=0.303 Sum_probs=70.9
Q ss_pred ccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecC-CCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCC
Q 013840 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDK-TTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (435)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~-~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~ 86 (435)
.......++|||+|||+++|+++|+++|+.|| |.+++++.++ .+++++|||||+|.+.++|.+|+ .|++.. +.|
T Consensus 13 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~-~~g-- 87 (100)
T 2j76_E 13 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEES-LGN-- 87 (100)
T ss_dssp -------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCC-BTT--
T ss_pred cCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCE-ECC--
Confidence 34456789999999999999999999999999 9999999988 58999999999999999999999 899876 444
Q ss_pred CceeeeccCch
Q 013840 87 SPLQVKYADGE 97 (435)
Q Consensus 87 ~~i~~~~~~~~ 97 (435)
+.|.+.++.+.
T Consensus 88 ~~l~V~~a~~~ 98 (100)
T 2j76_E 88 RRIRVDVADQA 98 (100)
T ss_dssp BCCCCEECCCS
T ss_pred eEEEEEeccCC
Confidence 78888887654
No 273
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2e-16 Score=117.62 Aligned_cols=79 Identities=15% Similarity=0.302 Sum_probs=67.9
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 427 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a~ 427 (435)
.+++|||+|||.++|+++|+++|+.||+|.+|.|+.+ ++|||||+|.+.++|++|... ...+.|++|+|.+++
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecC
Confidence 5689999999999999999999999999999999754 689999999999999864332 345689999999999
Q ss_pred CCcCCC
Q 013840 428 DNKQNK 433 (435)
Q Consensus 428 ~~~~~~ 433 (435)
.+....
T Consensus 77 ~~~~~~ 82 (88)
T 1wf0_A 77 PKHNSN 82 (88)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 877543
No 274
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=8.2e-16 Score=119.29 Aligned_cols=87 Identities=24% Similarity=0.366 Sum_probs=75.9
Q ss_pred ccCCceEEEecCCCCCCHHHHHHHHhccCc-eeEEEEE-ecCCCCCccceEEEEeCCHHHHHHHHHHhc-CCCcCCCCCC
Q 013840 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFAL-VDEVNII-KDKTTRASRGCCFVICPSRQEADKAVNACH-NKKTLPGASS 87 (435)
Q Consensus 11 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~-i~~~~~~-~~~~~~~~~g~afV~f~~~e~a~~al~~l~-~~~~~~~~~~ 87 (435)
..+.++|||+|||+++|+++|+++|+.||. |.++.++ .++.++.++|||||+|.+.++|.+|++.|+ +...+.| +
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g--~ 82 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--H 82 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTT--B
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecC--C
Confidence 457899999999999999999999999998 9999998 788888999999999999999999999995 3234555 8
Q ss_pred ceeeeccCchhc
Q 013840 88 PLQVKYADGELE 99 (435)
Q Consensus 88 ~i~~~~~~~~~~ 99 (435)
.|.+.++.+...
T Consensus 83 ~l~V~~a~~~~~ 94 (109)
T 2dis_A 83 QIAVDWAEPEID 94 (109)
T ss_dssp CCEEEESCSSCS
T ss_pred eEEEEEcCCCCC
Confidence 889998876544
No 275
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.64 E-value=9.5e-16 Score=119.35 Aligned_cols=81 Identities=17% Similarity=0.326 Sum_probs=71.6
Q ss_pred CCceEEEeCC--CCCC---CHHHHHHHhhcCCcEEEEEEEeeCC----CCCcceEEEEEeCCHHHHHHHHHhcCCceeCC
Q 013840 348 PGANLFIYHI--PQEF---GDQELGNAFQAFGRVLSAKVFVDKA----TGVSKCFGFVSYESPASAQNAIAMMNGCQLGG 418 (435)
Q Consensus 348 ~~~~v~V~nL--p~~~---t~~~L~~~F~~fG~v~~v~i~~~~~----~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~g 418 (435)
++++|+|+|+ |.++ .++||++.|++||+|.+|.|++++. +++++|++||+|.+.++|.+|++.|||+++.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 6789999999 3333 3689999999999999999998864 46788999999999999999999999999999
Q ss_pred eEEEEEEccC
Q 013840 419 KKLKVQLKRD 428 (435)
Q Consensus 419 r~i~v~~a~~ 428 (435)
|.|+|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999998753
No 276
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=3.1e-16 Score=122.55 Aligned_cols=86 Identities=20% Similarity=0.285 Sum_probs=75.4
Q ss_pred ccCccCCceEEEecCCCCCCHHHHHHHHhccCce-eEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCC
Q 013840 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALV-DEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (435)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i-~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~ 86 (435)
...+.+.++|||+|||+++|+++|+++|+.||.| ..|+++.|+ +++++|||||+|.+.++|++||+. |+.. +.+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~-~~g-- 83 (114)
T 2cpy_A 9 GDVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKK-LNG-- 83 (114)
T ss_dssp CSCCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEE-ETT--
T ss_pred CCCCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCc-cCC--
Confidence 3456678999999999999999999999999999 889999999 899999999999999999999987 7754 544
Q ss_pred CceeeeccCchh
Q 013840 87 SPLQVKYADGEL 98 (435)
Q Consensus 87 ~~i~~~~~~~~~ 98 (435)
+.|.+.++..+.
T Consensus 84 r~i~v~~a~~~~ 95 (114)
T 2cpy_A 84 REAFVHVVTLED 95 (114)
T ss_dssp EEEEEEEECHHH
T ss_pred eEEEEEECCHHH
Confidence 888888876554
No 277
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=3.8e-16 Score=118.64 Aligned_cols=84 Identities=17% Similarity=0.255 Sum_probs=74.8
Q ss_pred CccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCce
Q 013840 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (435)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i 89 (435)
.....++|||+|||+++++++|+++|+.||.|..++++.++.+++++|||||+|.+.++|++|++.||+.. +.| +.|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~-~~g--~~l 87 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRP-IGS--RKV 87 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCE-ETT--EEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCe-eCC--eEE
Confidence 44567899999999999999999999999999988888888889999999999999999999999999875 444 888
Q ss_pred eeeccCc
Q 013840 90 QVKYADG 96 (435)
Q Consensus 90 ~~~~~~~ 96 (435)
++.++..
T Consensus 88 ~V~~a~~ 94 (98)
T 2cqp_A 88 KLVLGSG 94 (98)
T ss_dssp EEEESSC
T ss_pred EEEEcCC
Confidence 8887653
No 278
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.5e-15 Score=116.94 Aligned_cols=83 Identities=17% Similarity=0.267 Sum_probs=71.2
Q ss_pred CCCCceEEEeCCCCCC-----------CHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCc
Q 013840 346 GPPGANLFIYHIPQEF-----------GDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGC 414 (435)
Q Consensus 346 ~~~~~~v~V~nLp~~~-----------t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~ 414 (435)
..++++|+|+||.... ++++|+++|++||+|.+|.| .++ .++|||||+|.+.++|.+|+..|||.
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCC
Confidence 3467999999994433 26899999999999999966 443 37999999999999999999999999
Q ss_pred eeCCeEEEEEEccCCcCC
Q 013840 415 QLGGKKLKVQLKRDNKQN 432 (435)
Q Consensus 415 ~l~gr~i~v~~a~~~~~~ 432 (435)
.|.||+|+|.++..+...
T Consensus 88 ~~~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 88 WFGGRQITAQAWDGTTDY 105 (112)
T ss_dssp EETTEECEEEECCSCCCS
T ss_pred EECCcEEEEEEeCCCCCc
Confidence 999999999999876543
No 279
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.1e-15 Score=117.18 Aligned_cols=85 Identities=15% Similarity=0.253 Sum_probs=72.2
Q ss_pred ccCccCCceEEEecCCCCCCHHHHHHHHhccCceeE-EEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCC
Q 013840 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDE-VNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (435)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~-~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~ 86 (435)
.......++|||+|||+++|+++|+++|+.||.|.. +.++.+ .+++++|||||+|.+.++|++||+. ++.. +.+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~-~~g-- 83 (104)
T 1wg5_A 9 SPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKER-IGH-- 83 (104)
T ss_dssp CSSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCC-SSS--
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-Ccch-hCC--
Confidence 344567899999999999999999999999999987 888888 5799999999999999999999987 6654 555
Q ss_pred CceeeeccCch
Q 013840 87 SPLQVKYADGE 97 (435)
Q Consensus 87 ~~i~~~~~~~~ 97 (435)
+.|.+.++...
T Consensus 84 r~i~v~~~~~~ 94 (104)
T 1wg5_A 84 RYIEIFKSSRA 94 (104)
T ss_dssp SCCEEEEECTT
T ss_pred cEEEEEECCHH
Confidence 67777766543
No 280
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.63 E-value=1.6e-15 Score=120.51 Aligned_cols=84 Identities=23% Similarity=0.360 Sum_probs=75.9
Q ss_pred CccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCce
Q 013840 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (435)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i 89 (435)
....+++|||+|||+++++++|+++|+.||.|..+++..++ ++.++|||||+|.+.++|++|++.|++.. +.| +.|
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~-~~g--~~l 106 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVP-LDG--RPM 106 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEE-SSS--CEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCE-ECC--cEE
Confidence 44667899999999999999999999999999999999998 89999999999999999999999999975 444 888
Q ss_pred eeeccCch
Q 013840 90 QVKYADGE 97 (435)
Q Consensus 90 ~~~~~~~~ 97 (435)
++.++...
T Consensus 107 ~V~~a~~~ 114 (124)
T 2kt5_A 107 DIQLVASQ 114 (124)
T ss_dssp EEEEECCT
T ss_pred EEEEeCCC
Confidence 88887654
No 281
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=6.8e-16 Score=119.49 Aligned_cols=87 Identities=25% Similarity=0.445 Sum_probs=75.8
Q ss_pred ccccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCC
Q 013840 6 KEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGA 85 (435)
Q Consensus 6 ~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~ 85 (435)
.........++|||+|||+++|+++|+++|+.||.|..++++.++ +.++|||||+|.+.++|++|++.|++.. +.|
T Consensus 21 ~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~-~~g- 96 (109)
T 2err_A 21 MNTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTV-VEG- 96 (109)
T ss_dssp -CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCE-ETT-
T ss_pred CCccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCE-ECC-
Confidence 345566788999999999999999999999999999999999886 4589999999999999999999999976 444
Q ss_pred CCceeeeccCch
Q 013840 86 SSPLQVKYADGE 97 (435)
Q Consensus 86 ~~~i~~~~~~~~ 97 (435)
+.|.+.++.++
T Consensus 97 -~~l~V~~a~~~ 107 (109)
T 2err_A 97 -RKIEVNNATAR 107 (109)
T ss_dssp -EECEEEECCCS
T ss_pred -EEEEEEECCCC
Confidence 88888887653
No 282
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.63 E-value=8.1e-16 Score=117.57 Aligned_cols=82 Identities=16% Similarity=0.191 Sum_probs=71.8
Q ss_pred CCCceEEEeCC--CCCCC--------HHHHHHHhhcCCcEEEEEEEeeCCC--CCcceEEEEEeCCHHHHHHHHHhcCCc
Q 013840 347 PPGANLFIYHI--PQEFG--------DQELGNAFQAFGRVLSAKVFVDKAT--GVSKCFGFVSYESPASAQNAIAMMNGC 414 (435)
Q Consensus 347 ~~~~~v~V~nL--p~~~t--------~~~L~~~F~~fG~v~~v~i~~~~~~--g~~~g~afV~F~~~~~A~~A~~~l~g~ 414 (435)
.++++|.|+|+ |..+. ++||++.|++||+|.+|.|++++.+ +.++|+|||+|.++++|.+|++.|||+
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 36789999999 44443 4799999999999999999988644 368999999999999999999999999
Q ss_pred eeCCeEEEEEEccC
Q 013840 415 QLGGKKLKVQLKRD 428 (435)
Q Consensus 415 ~l~gr~i~v~~a~~ 428 (435)
.++||.|+|.+...
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999998753
No 283
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.63 E-value=1.6e-15 Score=129.81 Aligned_cols=81 Identities=17% Similarity=0.180 Sum_probs=74.0
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEEcc
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQLKR 427 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~~a~ 427 (435)
..++|||+|||.++|+++|+++|+.||+|.+|.|+++. +|+++|||||+|.+.++|.+|+..++ ..+.|++|+|.+++
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKD 185 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhH
Confidence 35899999999999999999999999999999999986 69999999999999999999998764 59999999999987
Q ss_pred CCc
Q 013840 428 DNK 430 (435)
Q Consensus 428 ~~~ 430 (435)
.-.
T Consensus 186 ~y~ 188 (193)
T 2voo_A 186 DYF 188 (193)
T ss_dssp TC-
T ss_pred HHH
Confidence 643
No 284
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=4.3e-16 Score=122.32 Aligned_cols=88 Identities=27% Similarity=0.419 Sum_probs=76.9
Q ss_pred ccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCC
Q 013840 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (435)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~ 87 (435)
..+..+.++|||+|||+++|+++|+++|+.||.|..|+++.++.++.++|||||+|.+.++|++||+. ++.. +.| +
T Consensus 21 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~-~~g--~ 96 (116)
T 1x4b_A 21 KREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHS-IDG--R 96 (116)
T ss_dssp CCHHHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEE-ETT--E
T ss_pred ccccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcE-ECC--E
Confidence 33445669999999999999999999999999999999999998999999999999999999999987 6654 444 8
Q ss_pred ceeeeccCchhc
Q 013840 88 PLQVKYADGELE 99 (435)
Q Consensus 88 ~i~~~~~~~~~~ 99 (435)
.|.+.++.+...
T Consensus 97 ~l~V~~a~~~~~ 108 (116)
T 1x4b_A 97 VVEPKRAVAREE 108 (116)
T ss_dssp EEEEECCSSCCC
T ss_pred EEEEEECCCCcc
Confidence 899988876543
No 285
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.63 E-value=1.2e-15 Score=126.50 Aligned_cols=87 Identities=22% Similarity=0.348 Sum_probs=78.0
Q ss_pred cCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCc
Q 013840 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (435)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~ 88 (435)
....+.++|||+|||+++|+++|+++|+.||.|..|+++.++.++.++|||||+|.+.++|++||+.||+..+ .+ +.
T Consensus 34 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~-~g--~~ 110 (156)
T 1h2v_Z 34 KLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRL-DD--RI 110 (156)
T ss_dssp TTTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEE-TT--EE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE-CC--eE
Confidence 3345789999999999999999999999999999999999999999999999999999999999999998764 44 88
Q ss_pred eeeeccCchh
Q 013840 89 LQVKYADGEL 98 (435)
Q Consensus 89 i~~~~~~~~~ 98 (435)
|.|.++.+..
T Consensus 111 l~V~~a~~~~ 120 (156)
T 1h2v_Z 111 IRTDWDAGFK 120 (156)
T ss_dssp CEEEEESCCC
T ss_pred EEEEECCCCC
Confidence 9998886543
No 286
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.8e-15 Score=116.02 Aligned_cols=88 Identities=24% Similarity=0.275 Sum_probs=76.6
Q ss_pred cccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCC
Q 013840 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (435)
Q Consensus 7 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~ 86 (435)
......+.++|||+|||+++|+++|+++|+.||.|..|+++.++.++.++|||||+|.+.++|++||+. +. .+.|
T Consensus 8 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~-~~~g-- 82 (103)
T 2cqg_A 8 VKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RH-MIDG-- 82 (103)
T ss_dssp CSCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--CE-EETT--
T ss_pred CCCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc--CC-eeCC--
Confidence 455667789999999999999999999999999999999999998999999999999999999999984 32 3444
Q ss_pred CceeeeccCchhc
Q 013840 87 SPLQVKYADGELE 99 (435)
Q Consensus 87 ~~i~~~~~~~~~~ 99 (435)
+.|.+.++.++..
T Consensus 83 ~~l~v~~a~~~~~ 95 (103)
T 2cqg_A 83 RWCDCKLPNSKQS 95 (103)
T ss_dssp EEEEEECCCTTCC
T ss_pred eEEEEEecCCCCc
Confidence 8888888876543
No 287
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.63 E-value=7.8e-16 Score=114.15 Aligned_cols=71 Identities=25% Similarity=0.487 Sum_probs=66.4
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcC----C-------cEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCcee
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAF----G-------RVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQL 416 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~f----G-------~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l 416 (435)
+.++|||+|||.++|+++|+++|+.| | .|.++.+..+ +|||||+|.+.++|.+|+ .|||..+
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 56899999999999999999999999 8 9999998754 689999999999999999 9999999
Q ss_pred CCeEEEEEE
Q 013840 417 GGKKLKVQL 425 (435)
Q Consensus 417 ~gr~i~v~~ 425 (435)
.|++|+|+.
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999999974
No 288
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.62 E-value=3.1e-16 Score=117.15 Aligned_cols=80 Identities=24% Similarity=0.396 Sum_probs=70.8
Q ss_pred ceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCceeeecc
Q 013840 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYA 94 (435)
Q Consensus 15 ~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~~~~~ 94 (435)
++|||+|||+++++++|+++|+.||.|.+++++.++.++.++|||||+|.+.+ |.+|++.||+.. +.| +.+.+.++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~-~~g--~~l~V~~a 77 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTD-FMG--RTIRVTEA 77 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSC-CSS--SSCSEEEC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCE-ECC--eEEEEEEc
Confidence 68999999999999999999999999999999999988999999999999999 999999999976 444 88888887
Q ss_pred Cchh
Q 013840 95 DGEL 98 (435)
Q Consensus 95 ~~~~ 98 (435)
.+..
T Consensus 78 ~~~~ 81 (90)
T 2ki2_A 78 NPKK 81 (90)
T ss_dssp ----
T ss_pred CCCC
Confidence 6543
No 289
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.62 E-value=4.8e-16 Score=124.45 Aligned_cols=83 Identities=12% Similarity=0.157 Sum_probs=73.2
Q ss_pred CccCCceEEEecCCCCCCHHHHHHHHhccCc---eeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCC
Q 013840 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFAL---VDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (435)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~---i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~ 86 (435)
+..+.++|||+|||+++|+++|+++|+.||. |..|+++.|+. ++++|||||+|.+.++|++||+ +|+.. +.+
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~-l~g-- 114 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRES-MGH-- 114 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEE-SSS--
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCE-ECC--
Confidence 4456789999999999999999999999999 88999999987 9999999999999999999999 88865 444
Q ss_pred CceeeeccCch
Q 013840 87 SPLQVKYADGE 97 (435)
Q Consensus 87 ~~i~~~~~~~~ 97 (435)
+.|.+.++..+
T Consensus 115 r~i~V~~a~~~ 125 (136)
T 2hgl_A 115 RYIEVFKSHRT 125 (136)
T ss_dssp SEEEEEECCHH
T ss_pred EEEEEEECChH
Confidence 78888776543
No 290
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.6e-15 Score=116.36 Aligned_cols=85 Identities=15% Similarity=0.364 Sum_probs=73.6
Q ss_pred ccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCC
Q 013840 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (435)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~ 87 (435)
.....+.++|||+|||+++|+++|+++|+.||.|..+++..+ +.++|||||+|.+.++|++||+.||+..+ .+ +
T Consensus 16 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~-~g--~ 89 (109)
T 1x4a_A 16 GPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDY-DG--Y 89 (109)
T ss_dssp CCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEE-TT--E
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEE-CC--e
Confidence 445667899999999999999999999999999999998554 45889999999999999999999999754 44 8
Q ss_pred ceeeeccCchh
Q 013840 88 PLQVKYADGEL 98 (435)
Q Consensus 88 ~i~~~~~~~~~ 98 (435)
.|.+.++.+..
T Consensus 90 ~l~V~~a~~~~ 100 (109)
T 1x4a_A 90 RLRVEFPRSGR 100 (109)
T ss_dssp ECEEECCCCCC
T ss_pred EEEEEEcccCC
Confidence 89998887644
No 291
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=7.3e-16 Score=117.54 Aligned_cols=82 Identities=13% Similarity=0.114 Sum_probs=70.2
Q ss_pred cCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCc
Q 013840 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (435)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~ 88 (435)
......++|||+|||+++|+++|+++|+.||.+ .|+++.++ +++++|||||+|.+.++|++||+ +|+. .+.+ +.
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~-~~~g--r~ 83 (102)
T 1wez_A 10 FQSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKA-NMQH--RY 83 (102)
T ss_dssp CCCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSC-CSSS--SC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCC-eECC--cE
Confidence 455677899999999999999999999999955 89999998 79999999999999999999995 6765 4555 67
Q ss_pred eeeeccCc
Q 013840 89 LQVKYADG 96 (435)
Q Consensus 89 i~~~~~~~ 96 (435)
|.+..+..
T Consensus 84 i~V~~~~~ 91 (102)
T 1wez_A 84 VELFLNST 91 (102)
T ss_dssp CEEEEECC
T ss_pred EEEEECCC
Confidence 77766554
No 292
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.62 E-value=8.6e-16 Score=112.13 Aligned_cols=66 Identities=18% Similarity=0.226 Sum_probs=60.6
Q ss_pred CceEEEecCCCCC------CHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCc
Q 013840 14 RVKLFVGQVPKHM------TEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKT 81 (435)
Q Consensus 14 ~~~l~v~nLp~~~------t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~ 81 (435)
+++|||+|||+++ |+++|+++|++||.|.++++. +.+++++|||||+|.+.++|.+|++.||+..+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~ 72 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKL 72 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCccc
Confidence 4799999999999 789999999999999999887 35789999999999999999999999999864
No 293
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.3e-15 Score=113.86 Aligned_cols=83 Identities=16% Similarity=0.289 Sum_probs=73.5
Q ss_pred cCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCc
Q 013840 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (435)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~ 88 (435)
......++|||+|||+++|+++|+++|+.| .|..++++.+ .+++++|||||+|.+.++|++||+ +|+.. +.| +.
T Consensus 5 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~-~~g--r~ 78 (91)
T 2dgw_A 5 SSGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREY-MGG--RY 78 (91)
T ss_dssp CCCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEE-ETT--EE
T ss_pred CCCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCce-eCC--cE
Confidence 345677999999999999999999999999 8999999999 579999999999999999999999 98875 444 78
Q ss_pred eeeeccCch
Q 013840 89 LQVKYADGE 97 (435)
Q Consensus 89 i~~~~~~~~ 97 (435)
|.+.++...
T Consensus 79 i~v~~a~~~ 87 (91)
T 2dgw_A 79 IEVFREKSG 87 (91)
T ss_dssp EEEEEESSC
T ss_pred EEEEECCcC
Confidence 888887654
No 294
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.62 E-value=5.9e-16 Score=124.54 Aligned_cols=121 Identities=18% Similarity=0.248 Sum_probs=75.7
Q ss_pred eEEEEeCCHHHHHHHHHHhcCCCcCCCCCCceeeeccCchhccccceEEEecCCCCCCHHHHHHhhhccCCeeEEEEecC
Q 013840 58 CCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRG 137 (435)
Q Consensus 58 ~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~ 137 (435)
++|..|++...+.+|++.+++.....+. ..... ..+......++|||+|||.++++++|+++|+.||.|..|.+..+
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~--~~~~~-~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~ 82 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRG--SMSYG-RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRD 82 (135)
T ss_dssp -------------------------------CCSC-CSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCC
T ss_pred cccccccCCCchhhhhhhccCCCCCCCC--CCCcC-CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEec
Confidence 6788888999999999888775432221 11111 12233334678999999999999999999999999999999887
Q ss_pred C-CCCcccEEEEEeCCHHHHHHHHHHHcCCCcCCCCcceEEEEecCCH
Q 013840 138 S-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTE 184 (435)
Q Consensus 138 ~-~~~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~a~~~ 184 (435)
. ++.++|||||+|.+.++|.+|++.|++.. ++|+. |.|.++...
T Consensus 83 ~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~-i~g~~--l~V~~a~~~ 127 (135)
T 2lea_A 83 RYTKESRGFAFVRFHDKRDAEDAMDAMDGAV-LDGRE--LRVQMARYG 127 (135)
T ss_dssp SSSSSCCSCCEEECSCHHHHHHHHTTTTTCC-SSSSC--CEEEECCCC
T ss_pred CCCCccceEEEEEECCHHHHHHHHHHcCCCE-ECCEE--EEEEECCCC
Confidence 5 78899999999999999999999999976 77876 777777654
No 295
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=8.8e-16 Score=119.33 Aligned_cols=88 Identities=15% Similarity=0.286 Sum_probs=76.5
Q ss_pred ccCccCCceEEEecCCCCCCHHHHH---HHHhccCceeEEEEEecCCCC---CccceEEEEeCCHHHHHHHHHHhcCCCc
Q 013840 8 KKSSEERVKLFVGQVPKHMTEAQLL---AMFKEFALVDEVNIIKDKTTR---ASRGCCFVICPSRQEADKAVNACHNKKT 81 (435)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~---~~f~~~g~i~~~~~~~~~~~~---~~~g~afV~f~~~e~a~~al~~l~~~~~ 81 (435)
.......++|||+|||+++++++|+ ++|++||.|..+++..++.++ .++|||||+|.+.++|++||+.||+..
T Consensus 9 ~~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~- 87 (111)
T 2cpi_A 9 SVRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV- 87 (111)
T ss_dssp CCCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEE-
T ss_pred cccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCE-
Confidence 4455678899999999999999999 999999999999999887644 566999999999999999999999986
Q ss_pred CCCCCCceeeeccCchh
Q 013840 82 LPGASSPLQVKYADGEL 98 (435)
Q Consensus 82 ~~~~~~~i~~~~~~~~~ 98 (435)
+.| +.|++.++.++.
T Consensus 88 ~~g--r~l~V~~a~~k~ 102 (111)
T 2cpi_A 88 VDG--RTLKASLGTTKY 102 (111)
T ss_dssp ETT--EEEEEESCCCCS
T ss_pred ECC--EEEEEEeccccc
Confidence 444 899999887654
No 296
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.61 E-value=6.4e-16 Score=119.25 Aligned_cols=85 Identities=15% Similarity=0.258 Sum_probs=74.2
Q ss_pred ccCccCCceEEEecCCCCCCHHHHHHHHhccCc---eeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCC
Q 013840 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFAL---VDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (435)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~---i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~ 84 (435)
..+....++|||+|||+++|+++|+++|+.||. |..|+++.++. ++++|||||+|.+.++|++||+ +++.. +.+
T Consensus 5 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~-~~g 81 (107)
T 2lmi_A 5 EEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMY-MGQ 81 (107)
T ss_dssp CCCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCC-SSS
T ss_pred cCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcce-eCC
Confidence 445677899999999999999999999999998 89999999987 9999999999999999999999 88764 554
Q ss_pred CCCceeeeccCch
Q 013840 85 ASSPLQVKYADGE 97 (435)
Q Consensus 85 ~~~~i~~~~~~~~ 97 (435)
+.|.+.++..+
T Consensus 82 --r~i~V~~a~~~ 92 (107)
T 2lmi_A 82 --RYVEVYEINNE 92 (107)
T ss_dssp --SCCCCEECCHH
T ss_pred --eEEEEEECCHH
Confidence 77887777643
No 297
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.61 E-value=5.4e-16 Score=123.32 Aligned_cols=84 Identities=21% Similarity=0.345 Sum_probs=75.1
Q ss_pred CccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCce
Q 013840 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (435)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i 89 (435)
...+.++|||+|||+++|+++|+++|+.||.|.+|+++.++.++.++|||||+|.+.++|.+|+ .|++.. +.| +.|
T Consensus 32 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~-~~g--~~l 107 (124)
T 2jwn_A 32 KEIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETV-FRG--RTI 107 (124)
T ss_dssp HHHHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCE-ETT--EEC
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCe-ECC--eEE
Confidence 3456789999999999999999999999999999999999888999999999999999999999 798875 444 888
Q ss_pred eeeccCch
Q 013840 90 QVKYADGE 97 (435)
Q Consensus 90 ~~~~~~~~ 97 (435)
.+.++...
T Consensus 108 ~V~~a~~~ 115 (124)
T 2jwn_A 108 KVLPKRTN 115 (124)
T ss_dssp EEEESSCC
T ss_pred EEEECCCC
Confidence 88887643
No 298
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.61 E-value=7e-16 Score=121.14 Aligned_cols=84 Identities=13% Similarity=0.159 Sum_probs=73.1
Q ss_pred cCccCCceEEEecCCCCCCHHHHHHHHhccCc---eeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCC
Q 013840 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFAL---VDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGA 85 (435)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~---i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~ 85 (435)
....+.++|||+|||+++|+++|+++|+.||. |..|+++.++. ++++|||||+|.+.++|++||+ +|+.. +.+
T Consensus 12 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~-~~g- 87 (118)
T 2db1_A 12 PEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRES-MGH- 87 (118)
T ss_dssp SCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEE-ETT-
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCe-ECC-
Confidence 34566789999999999999999999999999 89999999987 9999999999999999999998 88864 444
Q ss_pred CCceeeeccCch
Q 013840 86 SSPLQVKYADGE 97 (435)
Q Consensus 86 ~~~i~~~~~~~~ 97 (435)
+.|++.++..+
T Consensus 88 -r~i~V~~a~~~ 98 (118)
T 2db1_A 88 -RYIEVFKSHRT 98 (118)
T ss_dssp -EEEEEEEECHH
T ss_pred -eEEEEEECCHH
Confidence 78887776543
No 299
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.61 E-value=3.1e-15 Score=118.33 Aligned_cols=84 Identities=12% Similarity=0.255 Sum_probs=71.4
Q ss_pred cCccCCceEEEecCCCCCCHHHHH----HHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCC
Q 013840 9 KSSEERVKLFVGQVPKHMTEAQLL----AMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (435)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~t~~~l~----~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~ 84 (435)
....++++|||+|||+.+++++|+ ++|++||.|.+|.+.. +++++|||||+|.+.++|.+|++.|||..+ .|
T Consensus 24 ~~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l-~g 99 (127)
T 2a3j_A 24 PHTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPF-QG 99 (127)
T ss_dssp CCCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCC-TT
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEe-CC
Confidence 345668899999999999999876 6999999999887743 578899999999999999999999999864 44
Q ss_pred CCCceeeeccCchh
Q 013840 85 ASSPLQVKYADGEL 98 (435)
Q Consensus 85 ~~~~i~~~~~~~~~ 98 (435)
+.|++.|+....
T Consensus 100 --r~l~V~~a~~~~ 111 (127)
T 2a3j_A 100 --NPLVITFSETPQ 111 (127)
T ss_dssp --SCCEEEECCCCC
T ss_pred --CEEEEEEccCcc
Confidence 789999886544
No 300
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=1e-15 Score=115.74 Aligned_cols=81 Identities=17% Similarity=0.273 Sum_probs=69.5
Q ss_pred cCccCCceEEEecCCC-CCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCC-cCCCCC
Q 013840 9 KSSEERVKLFVGQVPK-HMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKK-TLPGAS 86 (435)
Q Consensus 9 ~~~~~~~~l~v~nLp~-~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~-~~~~~~ 86 (435)
....++++|||+|||+ ++|+++|+++|++||.|.+|++++++ |||||+|.+.++|..|++.|++.. .+.|
T Consensus 10 ~~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k------g~aFVef~~~~~A~~Ai~~l~~~~~~~~G-- 81 (102)
T 1x4d_A 10 GRVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI------NEAFIEMATTEDAQAAVDYYTTTPALVFG-- 81 (102)
T ss_dssp CCCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS------SCEEEEESSHHHHHHHHHHHHHSCCEETT--
T ss_pred CCCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC------CEEEEEECCHHHHHHHHHHHcCCCceECC--
Confidence 3455789999999999 99999999999999999999997654 699999999999999999998643 2444
Q ss_pred CceeeeccCch
Q 013840 87 SPLQVKYADGE 97 (435)
Q Consensus 87 ~~i~~~~~~~~ 97 (435)
+.|.+.++...
T Consensus 82 r~l~V~~a~~~ 92 (102)
T 1x4d_A 82 KPVRVHLSQKY 92 (102)
T ss_dssp EECEEEEECCC
T ss_pred cEEEEEECCCC
Confidence 88999888643
No 301
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.61 E-value=2e-15 Score=122.83 Aligned_cols=84 Identities=25% Similarity=0.389 Sum_probs=74.6
Q ss_pred ccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCC
Q 013840 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (435)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~ 87 (435)
.....+.++|||+|||+++|+++|+++|+.||.|..++++.++.+++++|||||+|.+.++|++|++.||+.. +.| +
T Consensus 57 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~ 133 (140)
T 2ku7_A 57 GGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESE-LFG--R 133 (140)
T ss_dssp CSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEE-ETT--E
T ss_pred CCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCE-ECC--E
Confidence 4455678999999999999999999999999999999999998899999999999999999999999999875 444 7
Q ss_pred ceeeecc
Q 013840 88 PLQVKYA 94 (435)
Q Consensus 88 ~i~~~~~ 94 (435)
.|++.++
T Consensus 134 ~l~v~~A 140 (140)
T 2ku7_A 134 TIRVNLA 140 (140)
T ss_dssp EEEEEC-
T ss_pred EEEEEeC
Confidence 7777653
No 302
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=6.2e-15 Score=109.93 Aligned_cols=79 Identities=28% Similarity=0.497 Sum_probs=69.5
Q ss_pred CccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCce
Q 013840 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (435)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i 89 (435)
...+.++|||+|||+++|+++|+++|+.||.|..+++. +|||||+|.+.++|++|++.||+..+ .+ +.|
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~-~g--~~l 72 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKL-HG--VNI 72 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBC-SS--CBC
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCcc-CC--cEE
Confidence 45678999999999999999999999999999999986 46999999999999999999999754 44 889
Q ss_pred eeeccCchhc
Q 013840 90 QVKYADGELE 99 (435)
Q Consensus 90 ~~~~~~~~~~ 99 (435)
.+.++.+...
T Consensus 73 ~v~~a~~~~~ 82 (90)
T 2dnq_A 73 NVEASKNKSK 82 (90)
T ss_dssp EEECSSCCCC
T ss_pred EEEECCCCCC
Confidence 9988876543
No 303
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=5.8e-16 Score=122.99 Aligned_cols=84 Identities=15% Similarity=0.236 Sum_probs=72.7
Q ss_pred CccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCce
Q 013840 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (435)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i 89 (435)
...+.++|||+|||+++|+++|+++|+.||.|..+.++.+..+++++|||||+|.+.++|++||+ +|+.. +.| +.|
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~-~~g--r~i 96 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQY-MGN--RFI 96 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBC-STT--SCB
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCe-ECC--cEE
Confidence 34567899999999999999999999999999886777777789999999999999999999999 88865 544 788
Q ss_pred eeeccCch
Q 013840 90 QVKYADGE 97 (435)
Q Consensus 90 ~~~~~~~~ 97 (435)
.+.++..+
T Consensus 97 ~V~~a~~~ 104 (124)
T 1wel_A 97 QVHPITKK 104 (124)
T ss_dssp EEEEECHH
T ss_pred EEEECCHH
Confidence 88877653
No 304
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.60 E-value=1.5e-15 Score=116.70 Aligned_cols=83 Identities=16% Similarity=0.193 Sum_probs=72.1
Q ss_pred cCccCCceEEEecCCCCC------CHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcC
Q 013840 9 KSSEERVKLFVGQVPKHM------TEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTL 82 (435)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~------t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~ 82 (435)
.....+++|||+|||+.+ |+++|+++|+.||.|..+++. +.+++++|||||+|.+.++|.+|++.||+..+
T Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~- 86 (105)
T 2nlw_A 10 EADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKL- 86 (105)
T ss_dssp SCCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEEC-
T ss_pred CCCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCccc-
Confidence 344557899999999999 789999999999999999887 35789999999999999999999999999764
Q ss_pred CCCCC-ceeeeccCc
Q 013840 83 PGASS-PLQVKYADG 96 (435)
Q Consensus 83 ~~~~~-~i~~~~~~~ 96 (435)
.| + .|++.++..
T Consensus 87 ~g--~~~l~V~~a~~ 99 (105)
T 2nlw_A 87 DK--QHTFRVNLFTD 99 (105)
T ss_dssp ST--TCEEEEECSCC
T ss_pred CC--CceEEEEEcch
Confidence 33 6 888888764
No 305
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.60 E-value=9.9e-16 Score=110.08 Aligned_cols=74 Identities=23% Similarity=0.434 Sum_probs=65.5
Q ss_pred eEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCceeeec
Q 013840 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQVKY 93 (435)
Q Consensus 16 ~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~~~~ 93 (435)
+|||+|||+++|+++|+++|++||+|.++.+..++.++.++|||||+|.+.++|++|++. ++.. +.| +.+.+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~-~~g--~~l~v~~ 74 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHN-VGL--SKCEIKV 74 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCC-BTT--BCCCEEE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCe-ECC--EEEEEEE
Confidence 699999999999999999999999999999999998899999999999999999999985 5543 544 6666554
No 306
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.60 E-value=1.5e-15 Score=132.68 Aligned_cols=79 Identities=20% Similarity=0.298 Sum_probs=70.7
Q ss_pred CCCceEEEeCCCCCC---------CHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCcee-
Q 013840 347 PPGANLFIYHIPQEF---------GDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQL- 416 (435)
Q Consensus 347 ~~~~~v~V~nLp~~~---------t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l- 416 (435)
...++|||+||+..+ |+++|+++|+.||+|.+|.|+.+ +|||||+|.++++|..|++.|||..|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l~ 205 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTLL 205 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCCC
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEEe
Confidence 367999999999998 79999999999999999999854 78999999999999999999999999
Q ss_pred -----------CCeEEEEEEccCCcC
Q 013840 417 -----------GGKKLKVQLKRDNKQ 431 (435)
Q Consensus 417 -----------~gr~i~v~~a~~~~~ 431 (435)
.|+.|.|.||+....
T Consensus 206 ~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 206 LPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CTTSTTGGGGGGSCCCEEEECC----
T ss_pred ccccccccccCCCCEEEEEEccCCCC
Confidence 899999999987653
No 307
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.59 E-value=5.4e-16 Score=118.48 Aligned_cols=86 Identities=19% Similarity=0.248 Sum_probs=73.9
Q ss_pred cCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCc
Q 013840 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (435)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~ 88 (435)
......++|||+|||+++|+++|+++|+.||.|.. .++.++.++.++|||||+|.+.++|++||+ ||+..+ . ++.
T Consensus 12 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~-~--g~~ 86 (101)
T 1fj7_A 12 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKV-F--GNE 86 (101)
T ss_dssp TTCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCB-T--TBC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEE-C--CcE
Confidence 34456889999999999999999999999999887 666777778999999999999999999998 998764 3 488
Q ss_pred eeeeccCchhc
Q 013840 89 LQVKYADGELE 99 (435)
Q Consensus 89 i~~~~~~~~~~ 99 (435)
|.+.++.+...
T Consensus 87 l~V~~a~~~~~ 97 (101)
T 1fj7_A 87 IKLEKPKGRDG 97 (101)
T ss_dssp CEEECCSCCCC
T ss_pred EEEEEcCCCCC
Confidence 99988876543
No 308
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=7.7e-15 Score=111.08 Aligned_cols=84 Identities=18% Similarity=0.276 Sum_probs=71.8
Q ss_pred ccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCC
Q 013840 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (435)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~ 87 (435)
.....++++|||+|||+++|+++|+++|++||.|..+.+..+ +|||||+|.+.++|++|++.||+..+ .+.++
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~-~~~g~ 83 (97)
T 1why_A 11 YGKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPL-GGPDR 83 (97)
T ss_dssp CCCCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBC-SSSSC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEe-CCCCc
Confidence 345567899999999999999999999999999999988654 57999999999999999999999864 42248
Q ss_pred ceeeeccCchh
Q 013840 88 PLQVKYADGEL 98 (435)
Q Consensus 88 ~i~~~~~~~~~ 98 (435)
.|.+.++.++.
T Consensus 84 ~l~V~~a~~~~ 94 (97)
T 1why_A 84 RLRVDFAKSGP 94 (97)
T ss_dssp BCEEEECCCCC
T ss_pred EEEEEECCCCC
Confidence 89999887653
No 309
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=3e-15 Score=114.83 Aligned_cols=82 Identities=13% Similarity=0.322 Sum_probs=69.8
Q ss_pred ccCccCCceEEEecCCCC-CCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCC-cCCCC
Q 013840 8 KKSSEERVKLFVGQVPKH-MTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKK-TLPGA 85 (435)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~-~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~-~~~~~ 85 (435)
+.+..++++|||+|||++ +|+++|+++|++||.|.+|++++ .+|||||+|.+.++|.+|++.|++.. .+.|
T Consensus 19 ~~~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~G- 91 (112)
T 1x4f_A 19 DQKQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQG- 91 (112)
T ss_dssp CCSSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSS-
T ss_pred cccCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECC-
Confidence 455678999999999998 99999999999999999999864 35799999999999999999987532 3444
Q ss_pred CCceeeeccCch
Q 013840 86 SSPLQVKYADGE 97 (435)
Q Consensus 86 ~~~i~~~~~~~~ 97 (435)
+.|.+.++...
T Consensus 92 -r~l~V~~a~~~ 102 (112)
T 1x4f_A 92 -RCVKVDLSEKY 102 (112)
T ss_dssp -SCCEEEEECSC
T ss_pred -EEEEEEECccc
Confidence 88898887654
No 310
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=4e-15 Score=113.87 Aligned_cols=88 Identities=25% Similarity=0.350 Sum_probs=75.9
Q ss_pred ccccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCC
Q 013840 6 KEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGA 85 (435)
Q Consensus 6 ~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~ 85 (435)
.......+.++|||+|||+++|+++|+++|+.|+ .++++.++.++.++|||||+|.+.++|++||+.||+.. +.+
T Consensus 7 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~-~~g- 81 (102)
T 2fc8_A 7 GPNARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGE-IDG- 81 (102)
T ss_dssp TTSSSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCE-ETT-
T ss_pred CCCCCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCe-ECC-
Confidence 3456677889999999999999999999999774 57888888889999999999999999999999999976 444
Q ss_pred CCceeeeccCchhc
Q 013840 86 SSPLQVKYADGELE 99 (435)
Q Consensus 86 ~~~i~~~~~~~~~~ 99 (435)
+.|.+.++.+...
T Consensus 82 -~~l~V~~a~~~~~ 94 (102)
T 2fc8_A 82 -NKVTLDWAKPKGE 94 (102)
T ss_dssp -EECEEEECCCCCS
T ss_pred -eEEEEEEecCCCC
Confidence 8899988876543
No 311
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.59 E-value=4.6e-15 Score=124.03 Aligned_cols=86 Identities=21% Similarity=0.274 Sum_probs=76.2
Q ss_pred CccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCce
Q 013840 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (435)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i 89 (435)
...+.++|||+|||+.+|+++|+++|+.||.|..|.++.++.++.++|||||+|.+.++|++||+.||+..+ .| +.|
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~-~g--~~l 144 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI-MG--QTI 144 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEE-TT--EEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEE-CC--EEE
Confidence 345567899999999999999999999999999999999998999999999999999999999999999764 44 888
Q ss_pred eeeccCchh
Q 013840 90 QVKYADGEL 98 (435)
Q Consensus 90 ~~~~~~~~~ 98 (435)
.+.|+....
T Consensus 145 ~V~~a~~~~ 153 (165)
T 1rk8_A 145 QVDWCFVKG 153 (165)
T ss_dssp EEEESEECC
T ss_pred EEEEecCCC
Confidence 888876543
No 312
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.59 E-value=5.2e-15 Score=112.98 Aligned_cols=80 Identities=21% Similarity=0.517 Sum_probs=69.3
Q ss_pred ccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCC
Q 013840 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (435)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~ 87 (435)
......+++|||+|||+++++++|+++|+.||.|.++++. +++|||||+|.+.++|.+|++.||+..+ .| +
T Consensus 21 ~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~-~g--~ 91 (101)
T 2la4_A 21 RSAPPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPF-QG--R 91 (101)
T ss_dssp TTSCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEE-TT--E
T ss_pred hcCCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeE-CC--e
Confidence 3445567999999999999999999999999999999987 3567999999999999999999999764 34 8
Q ss_pred ceeeeccCc
Q 013840 88 PLQVKYADG 96 (435)
Q Consensus 88 ~i~~~~~~~ 96 (435)
.|++.|+.+
T Consensus 92 ~l~V~~a~~ 100 (101)
T 2la4_A 92 NLRTGWGKE 100 (101)
T ss_dssp ECCCCBCCC
T ss_pred EEEEEeccC
Confidence 888888764
No 313
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.59 E-value=2.5e-15 Score=132.19 Aligned_cols=82 Identities=16% Similarity=0.293 Sum_probs=73.5
Q ss_pred CCceEEEecCCCCCCHHHHHHHHhccC--ceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCcee
Q 013840 13 ERVKLFVGQVPKHMTEAQLLAMFKEFA--LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (435)
Q Consensus 13 ~~~~l~v~nLp~~~t~~~l~~~f~~~g--~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~ 90 (435)
..++|||+|||+++|+++|+++|+.|| .|.+|+|+.|+.+++++|||||+|.+.++|++||+.||+..+ .+ +.|+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~-~G--r~l~ 143 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKREL-HG--QNPV 143 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCB-TT--BCCE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeE-CC--EEeE
Confidence 567899999999999999999999999 999999999999999999999999999999999999998764 44 8888
Q ss_pred eeccCch
Q 013840 91 VKYADGE 97 (435)
Q Consensus 91 ~~~~~~~ 97 (435)
|.++...
T Consensus 144 V~~a~~~ 150 (229)
T 3q2s_C 144 VTPVNKQ 150 (229)
T ss_dssp EEECCHH
T ss_pred EEECCCC
Confidence 8877643
No 314
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=2.5e-15 Score=115.47 Aligned_cols=79 Identities=20% Similarity=0.222 Sum_probs=68.6
Q ss_pred cCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCceee
Q 013840 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 91 (435)
Q Consensus 12 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~~ 91 (435)
.+.++|||+|||+++|+++|+++|+.| .|..|+|+.|+. ++++|||||+|.+.++|++|| .+|+.. +.+ +.|.+
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~-~~g--r~i~V 87 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRML-MIQ--RYVEV 87 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEE-ETT--EEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCe-ECC--eEEEE
Confidence 445799999999999999999999999 789999999986 999999999999999999999 677764 554 77777
Q ss_pred eccCc
Q 013840 92 KYADG 96 (435)
Q Consensus 92 ~~~~~ 96 (435)
..+..
T Consensus 88 ~~a~~ 92 (109)
T 2dnn_A 88 SPATE 92 (109)
T ss_dssp EECCH
T ss_pred EECCc
Confidence 66654
No 315
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=3.6e-15 Score=113.89 Aligned_cols=85 Identities=18% Similarity=0.345 Sum_probs=72.8
Q ss_pred cccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCC
Q 013840 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (435)
Q Consensus 7 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~ 86 (435)
......+.++|||+|||+++|+++|+++|+.||.| +++.+ .+++++|||||+|.+.++|++|++.||+..+ . +
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~-~--g 80 (101)
T 2fc9_A 8 NSTWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREI-E--G 80 (101)
T ss_dssp CCCCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEE-T--T
T ss_pred CccCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEe-C--C
Confidence 34566788999999999999999999999999976 55666 4688999999999999999999999999754 3 4
Q ss_pred CceeeeccCchh
Q 013840 87 SPLQVKYADGEL 98 (435)
Q Consensus 87 ~~i~~~~~~~~~ 98 (435)
+.|.+.++.+..
T Consensus 81 ~~l~v~~a~~~~ 92 (101)
T 2fc9_A 81 RAIRLELQGPRG 92 (101)
T ss_dssp EEEEEEECSSCC
T ss_pred eEEEEEEcCCCC
Confidence 889998887654
No 316
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=8.5e-15 Score=110.83 Aligned_cols=81 Identities=19% Similarity=0.329 Sum_probs=69.2
Q ss_pred cCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCc
Q 013840 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (435)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~ 88 (435)
.....+++|||+|||+++|+++|+++|+.||.|. +.++.+ .++|||||+|.+.++|++|++.||+..+ .| +.
T Consensus 14 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g--~~ 85 (97)
T 2e5j_A 14 EGAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRL-GT--DT 85 (97)
T ss_dssp SSSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCS-SS--SC
T ss_pred CCCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEE-CC--cE
Confidence 3455689999999999999999999999999997 666653 5778999999999999999999999864 44 78
Q ss_pred eeeeccCch
Q 013840 89 LQVKYADGE 97 (435)
Q Consensus 89 i~~~~~~~~ 97 (435)
|.+.++.+.
T Consensus 86 l~V~~a~~~ 94 (97)
T 2e5j_A 86 LRVALARQQ 94 (97)
T ss_dssp CEEEECCCC
T ss_pred EEEEEcCCC
Confidence 888887654
No 317
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.58 E-value=2.9e-15 Score=117.88 Aligned_cols=83 Identities=18% Similarity=0.225 Sum_probs=70.2
Q ss_pred cCccCCceEEEecCCCCCCHHHHHHHHhccCcee--EEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCC
Q 013840 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVD--EVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (435)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~--~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~ 86 (435)
......++|||+|||+++|+++|+++|+.| .|. .|+|+.|+. ++++|||||+|.+.++|++||+. ++. .+.|
T Consensus 37 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~-~l~g-- 110 (126)
T 2hgm_A 37 ADSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKE-RIGH-- 110 (126)
T ss_dssp TCSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTC-CBTT--
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCC-EECC--
Confidence 345667899999999999999999999999 466 899999987 99999999999999999999985 554 4555
Q ss_pred CceeeeccCch
Q 013840 87 SPLQVKYADGE 97 (435)
Q Consensus 87 ~~i~~~~~~~~ 97 (435)
+.|.+..+..+
T Consensus 111 R~I~V~~a~~~ 121 (126)
T 2hgm_A 111 RYIEVFKSSQE 121 (126)
T ss_dssp BCCCCEEECHH
T ss_pred EEEEEEECCHH
Confidence 77777766543
No 318
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.4e-15 Score=119.25 Aligned_cols=88 Identities=19% Similarity=0.289 Sum_probs=71.8
Q ss_pred cCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCc
Q 013840 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (435)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~ 88 (435)
....++++|||+|||+++|+++|+++|+.||.|..+.+..+..++.++|||||+|.+.++|++|++.|++..+ . ++.
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~-~--g~~ 96 (115)
T 2cpx_A 20 NPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKL-Y--GKI 96 (115)
T ss_dssp CCCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBC-S--SCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEe-C--CcE
Confidence 3445679999999999999999999999999984433322222688999999999999999999999999764 4 488
Q ss_pred eeeeccCchhc
Q 013840 89 LQVKYADGELE 99 (435)
Q Consensus 89 i~~~~~~~~~~ 99 (435)
|.+.++.+...
T Consensus 97 l~v~~a~~~~~ 107 (115)
T 2cpx_A 97 LVIEFGKNKKQ 107 (115)
T ss_dssp CEEEECCCCSC
T ss_pred EEEEEccCCCC
Confidence 99998876544
No 319
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=1.9e-15 Score=118.71 Aligned_cols=81 Identities=16% Similarity=0.264 Sum_probs=68.6
Q ss_pred ccCCceEEEecCCCCCCHHHHHHHHhccCce----eEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCC
Q 013840 11 SEERVKLFVGQVPKHMTEAQLLAMFKEFALV----DEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (435)
Q Consensus 11 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i----~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~ 86 (435)
..+.++|||+|||+++|+++|+++|+.||.| ..|+|+.++ +++++|||||+|.+.++|++||+. |+. .+.+
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~-~l~g-- 94 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKD-LLGK-- 94 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTE-ESSS--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCC-eeCC--
Confidence 4567899999999999999999999999975 689999985 799999999999999999999986 664 4555
Q ss_pred CceeeeccCc
Q 013840 87 SPLQVKYADG 96 (435)
Q Consensus 87 ~~i~~~~~~~ 96 (435)
+.|.+..+..
T Consensus 95 R~i~V~~a~~ 104 (123)
T 2dha_A 95 RYIELFRSTA 104 (123)
T ss_dssp CEECCEEECH
T ss_pred eEEEEEECCH
Confidence 6676665543
No 320
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.58 E-value=6.4e-15 Score=113.59 Aligned_cols=81 Identities=28% Similarity=0.474 Sum_probs=69.4
Q ss_pred cccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCC
Q 013840 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (435)
Q Consensus 7 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~ 86 (435)
........++|||+|||+++|+++|+++|+.||.|..+.++ +|||||+|.+.++|++|++.||+..+ .|
T Consensus 24 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~-~g-- 92 (108)
T 2jvo_A 24 RQEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSF-AN-- 92 (108)
T ss_dssp ----CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEE-TT--
T ss_pred ccCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEE-CC--
Confidence 34556788999999999999999999999999999999987 57999999999999999999999864 44
Q ss_pred CceeeeccCchh
Q 013840 87 SPLQVKYADGEL 98 (435)
Q Consensus 87 ~~i~~~~~~~~~ 98 (435)
+.+.+.++.+..
T Consensus 93 ~~l~V~~a~~~~ 104 (108)
T 2jvo_A 93 QPLEVVYSKLPA 104 (108)
T ss_dssp EECEEESCSCCC
T ss_pred eEEEEEEecCCC
Confidence 889998887643
No 321
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=7.6e-15 Score=113.42 Aligned_cols=83 Identities=19% Similarity=0.199 Sum_probs=70.4
Q ss_pred cCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCC--CCC
Q 013840 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLP--GAS 86 (435)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~--~~~ 86 (435)
......++|||+|||+++|+++|+++|+.||.|..++++.+ |||||+|.+.++|++||+.||+..+.. +..
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~ 82 (108)
T 1x4c_A 10 PSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGET 82 (108)
T ss_dssp CCCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcc
Confidence 34466899999999999999999999999999999999876 699999999999999999999976522 112
Q ss_pred CceeeeccCchh
Q 013840 87 SPLQVKYADGEL 98 (435)
Q Consensus 87 ~~i~~~~~~~~~ 98 (435)
+.|++.++.+..
T Consensus 83 ~~i~V~~a~~~~ 94 (108)
T 1x4c_A 83 AYIRVKVDGPRS 94 (108)
T ss_dssp EEEEEEESSCCS
T ss_pred eEEEEEeCCCCC
Confidence 788888886643
No 322
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=1.1e-14 Score=110.73 Aligned_cols=84 Identities=31% Similarity=0.486 Sum_probs=72.8
Q ss_pred cccccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCC
Q 013840 5 KKEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (435)
Q Consensus 5 ~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~ 84 (435)
...+....+.++|||+|||+++|+++|+++|++||.|..+++.++ +|||||+|.+.++|.+|++.|++.. +.|
T Consensus 6 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~-~~g 78 (99)
T 2cpj_A 6 SGGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMP-LRG 78 (99)
T ss_dssp SCCSCCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCC-BTT
T ss_pred CCCCCcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCE-eCC
Confidence 344566678899999999999999999999999999999998754 5799999999999999999999986 444
Q ss_pred CCCceeeeccCch
Q 013840 85 ASSPLQVKYADGE 97 (435)
Q Consensus 85 ~~~~i~~~~~~~~ 97 (435)
+.|.+.++.+.
T Consensus 79 --~~l~v~~a~~~ 89 (99)
T 2cpj_A 79 --KQLRVRFACHS 89 (99)
T ss_dssp --BCCEEEESSCC
T ss_pred --ceEEEEEcCCC
Confidence 88888888654
No 323
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.57 E-value=4.1e-15 Score=114.52 Aligned_cols=82 Identities=18% Similarity=0.190 Sum_probs=68.7
Q ss_pred ccCccCCceEEEecCCCCCCHHHHHHHHhccC-ceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCC
Q 013840 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFA-LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (435)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g-~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~ 86 (435)
...+...++|||+|||+++|+++|+++|+.|| .|..+.+.. +.++|||||+|.+.++|++||+.||+..+ .|
T Consensus 22 ~~~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l-~G-- 94 (111)
T 2jvr_A 22 SKLPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEF-RG-- 94 (111)
T ss_dssp ---CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEE-TT--
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEE-CC--
Confidence 34556778999999999999999999999999 899888743 34789999999999999999999999764 44
Q ss_pred CceeeeccCc
Q 013840 87 SPLQVKYADG 96 (435)
Q Consensus 87 ~~i~~~~~~~ 96 (435)
+.|++.++..
T Consensus 95 r~i~V~~a~~ 104 (111)
T 2jvr_A 95 SVITVERDDN 104 (111)
T ss_dssp EEEEEEESCC
T ss_pred eEEEEEECCC
Confidence 8888887754
No 324
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=9.7e-15 Score=113.09 Aligned_cols=82 Identities=16% Similarity=0.391 Sum_probs=71.8
Q ss_pred cCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCc
Q 013840 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (435)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~ 88 (435)
......++|||+|||+++|+++|+++|+.||.|..|+++.+ +|||||+|.+.++|.+|++.|++.. +.| +.
T Consensus 20 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~ 90 (109)
T 1x4g_A 20 QSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTT-IEG--HV 90 (109)
T ss_dssp HSCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCE-ETT--EE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCE-ECC--cE
Confidence 35567899999999999999999999999999999999876 5799999999999999999999975 444 88
Q ss_pred eeeeccCchhc
Q 013840 89 LQVKYADGELE 99 (435)
Q Consensus 89 i~~~~~~~~~~ 99 (435)
|.+.++.+...
T Consensus 91 l~v~~a~~~~~ 101 (109)
T 1x4g_A 91 VKCYWGKESPD 101 (109)
T ss_dssp CEEECCCCCCS
T ss_pred EEEEecCCCCC
Confidence 99988876543
No 325
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.34 E-value=2.1e-16 Score=124.08 Aligned_cols=88 Identities=19% Similarity=0.378 Sum_probs=77.8
Q ss_pred cCccCCceEEEecCCCCCCHHHHHHHHhccCceeE--------EEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCC
Q 013840 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDE--------VNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKK 80 (435)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~--------~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~ 80 (435)
++..+.++|||+|||+++++++|+++|+.||.|.. ++++.++.++.++|||||+|.+.++|++|++.||+..
T Consensus 2 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 81 (116)
T 2lcw_A 2 QDNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 81 (116)
Confidence 34567899999999999999999999999999998 8999998889999999999999999999999999975
Q ss_pred cCCCCCCceeeeccCchhc
Q 013840 81 TLPGASSPLQVKYADGELE 99 (435)
Q Consensus 81 ~~~~~~~~i~~~~~~~~~~ 99 (435)
+ .| +.|.+.++.+...
T Consensus 82 ~-~g--~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 82 F-SG--NPIKVSFATRRAD 97 (116)
Confidence 4 44 7888888866543
No 326
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.56 E-value=1.3e-15 Score=116.23 Aligned_cols=72 Identities=15% Similarity=0.243 Sum_probs=62.8
Q ss_pred EeCCCCCCCHHHHHHHh------------hcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEE
Q 013840 354 IYHIPQEFGDQELGNAF------------QAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKL 421 (435)
Q Consensus 354 V~nLp~~~t~~~L~~~F------------~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i 421 (435)
+.||+..+++++|+++| ++||+|.+|.|+++. +++++|||||+|.++++|.+|+..|||+.+.||.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45566666777666655 999999999999886 58999999999999999999999999999999999
Q ss_pred EEEEc
Q 013840 422 KVQLK 426 (435)
Q Consensus 422 ~v~~a 426 (435)
+|.|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 327
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.7e-14 Score=109.61 Aligned_cols=85 Identities=25% Similarity=0.321 Sum_probs=72.2
Q ss_pred cccccccCccCCceEEEecCCCCCCHHHHHHHHhcc--CceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCC
Q 013840 3 ESKKEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEF--ALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKK 80 (435)
Q Consensus 3 ~~~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~--g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~ 80 (435)
....+.....+.++|||+|||+++|+++|+++|+.| |.|..+++. +|||||+|.+.++|++|++.||+..
T Consensus 4 ~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~ 75 (99)
T 2cpd_A 4 GSSGDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKV 75 (99)
T ss_dssp CCCCCCSCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEE
T ss_pred cccccccccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCE
Confidence 344556666788999999999999999999999999 889888753 5699999999999999999999986
Q ss_pred cCCCCCCceeeeccCchh
Q 013840 81 TLPGASSPLQVKYADGEL 98 (435)
Q Consensus 81 ~~~~~~~~i~~~~~~~~~ 98 (435)
+ .| +.|.+.++.+..
T Consensus 76 ~-~g--~~l~v~~a~~~~ 90 (99)
T 2cpd_A 76 L-DG--SPIEVTLAKPVD 90 (99)
T ss_dssp E-TT--EEEEEECCCCCC
T ss_pred e-CC--cEEEEEECCCCC
Confidence 4 44 889998887654
No 328
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.56 E-value=1.3e-14 Score=109.49 Aligned_cols=78 Identities=17% Similarity=0.381 Sum_probs=65.3
Q ss_pred cCccCCceEEEecCCC-CCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCC
Q 013840 9 KSSEERVKLFVGQVPK-HMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (435)
Q Consensus 9 ~~~~~~~~l~v~nLp~-~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~ 87 (435)
.+..++++|||+|||+ ++|+++|+++|+.||.|..+++. +|||||+|.+.++|++|++.|++..+ .| +
T Consensus 5 ~~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~-~g--~ 73 (96)
T 2kvi_A 5 HNIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMN-FG--K 73 (96)
T ss_dssp ----CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSC-BT--T
T ss_pred ccCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCee-CC--c
Confidence 3556789999999998 99999999999999999999883 57999999999999999999999864 34 7
Q ss_pred ceeeeccCch
Q 013840 88 PLQVKYADGE 97 (435)
Q Consensus 88 ~i~~~~~~~~ 97 (435)
.|.+.++...
T Consensus 74 ~l~V~~a~~~ 83 (96)
T 2kvi_A 74 KLILEVSSSN 83 (96)
T ss_dssp TBCEEEEECC
T ss_pred EEEEEEcCcC
Confidence 7777776543
No 329
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=1.3e-14 Score=108.15 Aligned_cols=80 Identities=25% Similarity=0.365 Sum_probs=69.7
Q ss_pred ccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCC
Q 013840 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (435)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~ 87 (435)
.....+.++|||+|||+++|+++|+++|+.||.|..+++++ +||||+|.+.++|++|++.||+..+ .| +
T Consensus 3 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~-~g--~ 71 (90)
T 2dnp_A 3 SGSSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEV-KG--K 71 (90)
T ss_dssp CCSSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEE-TT--E
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEE-CC--c
Confidence 34567789999999999999999999999999999999863 3999999999999999999999764 44 8
Q ss_pred ceeeeccCchh
Q 013840 88 PLQVKYADGEL 98 (435)
Q Consensus 88 ~i~~~~~~~~~ 98 (435)
.|.+.++.+..
T Consensus 72 ~l~v~~a~~~~ 82 (90)
T 2dnp_A 72 RINVELSTKGQ 82 (90)
T ss_dssp ECEEEESCCCC
T ss_pred EEEEEECCCCC
Confidence 88888887654
No 330
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.55 E-value=3.8e-15 Score=112.83 Aligned_cols=83 Identities=17% Similarity=0.370 Sum_probs=71.5
Q ss_pred CccCCceEEEecCCCCCCHHHHH----HHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCC
Q 013840 10 SSEERVKLFVGQVPKHMTEAQLL----AMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGA 85 (435)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~----~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~ 85 (435)
+..++++|||+|||+++++++|+ ++|+.||.|..+++.. ++.++|||||+|.+.++|.+|++.||+..+ .|
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~-~g- 78 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPF-YD- 78 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEE-TT-
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEE-CC-
Confidence 35678999999999999999999 9999999999988763 467889999999999999999999999764 44
Q ss_pred CCceeeeccCchh
Q 013840 86 SSPLQVKYADGEL 98 (435)
Q Consensus 86 ~~~i~~~~~~~~~ 98 (435)
+.+.+.++.+..
T Consensus 79 -~~l~v~~a~~~~ 90 (97)
T 1nu4_A 79 -KPMRIQYAKTDS 90 (97)
T ss_dssp -EECEEEECSSCC
T ss_pred -cEEEEEEccCCC
Confidence 889998887643
No 331
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.55 E-value=1.8e-14 Score=121.41 Aligned_cols=85 Identities=22% Similarity=0.366 Sum_probs=75.9
Q ss_pred CccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCce
Q 013840 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (435)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i 89 (435)
....+++|||+|||+.+++++|+++|+.||.|..|.+..++ ++.++|||||+|.+.++|++|++.|++.. +.| +.|
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~-l~G--r~l 159 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVP-LDG--RPM 159 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCB-CSS--SBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCE-ECC--EEE
Confidence 34567899999999999999999999999999999999998 79999999999999999999999999975 444 888
Q ss_pred eeeccCchh
Q 013840 90 QVKYADGEL 98 (435)
Q Consensus 90 ~~~~~~~~~ 98 (435)
.+.++....
T Consensus 160 ~V~~a~~~~ 168 (177)
T 2f3j_A 160 DIQLVASQI 168 (177)
T ss_dssp EEEEESSGG
T ss_pred EEEEecCCC
Confidence 888876543
No 332
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.55 E-value=2.9e-15 Score=120.28 Aligned_cols=81 Identities=15% Similarity=0.125 Sum_probs=68.2
Q ss_pred CccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCce
Q 013840 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (435)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i 89 (435)
.....++|||+|||+++|+++|+++|+.|| |.+|+|+.|+. ++++|||||+|.+.++|++|| .+|+.. +.+ +.|
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~-l~g--R~i 115 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRAN-MQH--RYI 115 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCS-SSS--CCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCE-ECC--EEE
Confidence 445678999999999999999999999999 66899999986 999999999999999999999 677754 555 677
Q ss_pred eeeccCc
Q 013840 90 QVKYADG 96 (435)
Q Consensus 90 ~~~~~~~ 96 (435)
.+..+..
T Consensus 116 ~V~~a~~ 122 (139)
T 2hgn_A 116 ELFLNST 122 (139)
T ss_dssp CCEECCC
T ss_pred EEEECCC
Confidence 7766654
No 333
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=1.7e-14 Score=107.99 Aligned_cols=80 Identities=26% Similarity=0.393 Sum_probs=69.9
Q ss_pred ccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCC
Q 013840 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (435)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~ 87 (435)
.....+.++|||+|||+++|+++|+++|+.||.|..+++.+ +||||+|.+.++|.+|++.||+..+ . ++
T Consensus 4 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~-~--g~ 72 (92)
T 2dgt_A 4 GSSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEF-Q--GK 72 (92)
T ss_dssp SCCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEE-T--TE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCee-C--Cc
Confidence 34567789999999999999999999999999999998863 3999999999999999999999864 3 48
Q ss_pred ceeeeccCchh
Q 013840 88 PLQVKYADGEL 98 (435)
Q Consensus 88 ~i~~~~~~~~~ 98 (435)
.|.+.++.+..
T Consensus 73 ~l~V~~a~~~~ 83 (92)
T 2dgt_A 73 RMHVQLSTSRL 83 (92)
T ss_dssp EEEEEESSCCC
T ss_pred EEEEEEccCCC
Confidence 89998887644
No 334
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.55 E-value=2.3e-14 Score=108.25 Aligned_cols=78 Identities=18% Similarity=0.400 Sum_probs=66.7
Q ss_pred ccCccCCceEEEecCCC-CCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCC
Q 013840 8 KKSSEERVKLFVGQVPK-HMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (435)
Q Consensus 8 ~~~~~~~~~l~v~nLp~-~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~ 86 (435)
.....++++|||+|||+ ++++++|+++|+.||.|..+++ .+|||||+|.+.++|++|++.||+..+ .|
T Consensus 16 ~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~Ai~~l~g~~~-~g-- 84 (97)
T 2xnq_A 16 PRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI--------KNAFGFIQFDNPQSVRDAIEXESQEMN-FG-- 84 (97)
T ss_dssp ---CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE--------CSSEEEEEESSHHHHHHHHHHHTTSEE-TT--
T ss_pred cCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEE-CC--
Confidence 34556789999999998 9999999999999999999988 267999999999999999999999754 44
Q ss_pred CceeeeccCc
Q 013840 87 SPLQVKYADG 96 (435)
Q Consensus 87 ~~i~~~~~~~ 96 (435)
+.+.+.++..
T Consensus 85 ~~l~V~~a~~ 94 (97)
T 2xnq_A 85 KKLILEVSSS 94 (97)
T ss_dssp EECEEEECCC
T ss_pred EEEEEEecCC
Confidence 8888887764
No 335
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=4.9e-15 Score=113.63 Aligned_cols=82 Identities=20% Similarity=0.295 Sum_probs=67.6
Q ss_pred ccCccCCceEEE--ecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCc--CC
Q 013840 8 KKSSEERVKLFV--GQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKT--LP 83 (435)
Q Consensus 8 ~~~~~~~~~l~v--~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~--~~ 83 (435)
+....++++||| +||++++|+++|+++|++||.|.+|.+.. .+|||||+|.+.++|++|++.|||..+ ..
T Consensus 19 ~~~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~l 92 (114)
T 2cq2_A 19 ETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDL 92 (114)
T ss_dssp CCCSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTT
T ss_pred cCCCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEcccc
Confidence 445567889999 77999999999999999999999988753 367999999999999999999999854 22
Q ss_pred CCCCceeeeccC
Q 013840 84 GASSPLQVKYAD 95 (435)
Q Consensus 84 ~~~~~i~~~~~~ 95 (435)
+.++++.+.++.
T Consensus 93 g~g~~l~v~~a~ 104 (114)
T 2cq2_A 93 GQKITLYLNFVE 104 (114)
T ss_dssp SCEEECEEEEES
T ss_pred CCCcEEEEEecc
Confidence 335677776654
No 336
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=2.2e-14 Score=108.38 Aligned_cols=82 Identities=20% Similarity=0.305 Sum_probs=70.4
Q ss_pred cCccCCceEEEecCCCCCCHHHHHHHHhccCceeEE-EEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCC
Q 013840 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEV-NIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (435)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~-~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~ 87 (435)
......++|||+|||+++|+++|+++|+.||.|..+ .++.++.++ .|||+|.+.++|++|++.||+..+ . ++
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~-~--g~ 82 (96)
T 2e44_A 10 PKRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQL-E--NF 82 (96)
T ss_dssp CCCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBC-S--SC
T ss_pred CCCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEE-C--Cc
Confidence 344567999999999999999999999999999999 477776543 499999999999999999999864 3 48
Q ss_pred ceeeeccCch
Q 013840 88 PLQVKYADGE 97 (435)
Q Consensus 88 ~i~~~~~~~~ 97 (435)
.|.+.++.++
T Consensus 83 ~l~V~~a~~~ 92 (96)
T 2e44_A 83 TLKVAYIPDE 92 (96)
T ss_dssp BCEEEECCCC
T ss_pred EEEEEEcCcc
Confidence 8999988765
No 337
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=2.5e-14 Score=105.38 Aligned_cols=79 Identities=23% Similarity=0.458 Sum_probs=67.9
Q ss_pred cccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHh-cCCCcCCCC
Q 013840 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC-HNKKTLPGA 85 (435)
Q Consensus 7 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l-~~~~~~~~~ 85 (435)
....+...++|||+|||+++|+++|+++|+.||.|..+++..+ +|||||+|.+.++|.+|++.| ++.. +.|
T Consensus 5 ~~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~-~~g- 76 (85)
T 2ytc_A 5 SSGEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLI-VNG- 76 (85)
T ss_dssp CCCSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCE-ETT-
T ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCee-ECC-
Confidence 3455677899999999999999999999999999999999764 579999999999999999988 6654 544
Q ss_pred CCceeeecc
Q 013840 86 SSPLQVKYA 94 (435)
Q Consensus 86 ~~~i~~~~~ 94 (435)
+.+++.|+
T Consensus 77 -~~l~v~~a 84 (85)
T 2ytc_A 77 -RRLNVKWG 84 (85)
T ss_dssp -EECCEEEC
T ss_pred -CEEEEEec
Confidence 77777765
No 338
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.54 E-value=4.2e-15 Score=113.73 Aligned_cols=82 Identities=27% Similarity=0.391 Sum_probs=70.1
Q ss_pred cCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCc
Q 013840 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (435)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~ 88 (435)
.....+++|||+|||+++|+++|+++|+.||.|..++++.++ ++.++|||||+|.+.++|++|++ ++.. +.| +.
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~-~~g--~~ 77 (102)
T 2xs2_A 4 EGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQIN-FHG--KK 77 (102)
T ss_dssp CCEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCE-ETT--EE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCe-ECC--EE
Confidence 345567899999999999999999999999999999999998 89999999999999999999998 5543 444 66
Q ss_pred eeeeccCc
Q 013840 89 LQVKYADG 96 (435)
Q Consensus 89 i~~~~~~~ 96 (435)
+.+.++..
T Consensus 78 l~v~~a~~ 85 (102)
T 2xs2_A 78 LKLGPAIR 85 (102)
T ss_dssp CEEEEEEE
T ss_pred EEEEECCc
Confidence 66665543
No 339
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=1.7e-14 Score=111.81 Aligned_cols=78 Identities=19% Similarity=0.205 Sum_probs=67.7
Q ss_pred CccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCce
Q 013840 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (435)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i 89 (435)
.....++|||+|||+++|+++|+++|+.||.|..|.+.. .+|||||+|.+.++|++|++.||+..+ . ++.|
T Consensus 6 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~-~--g~~l 76 (111)
T 1whx_A 6 SGRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKF-H--HVPL 76 (111)
T ss_dssp TSEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBS-S--SSBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEE-C--CeEE
Confidence 344578999999999999999999999999999988753 567999999999999999999999864 3 3888
Q ss_pred eeeccCc
Q 013840 90 QVKYADG 96 (435)
Q Consensus 90 ~~~~~~~ 96 (435)
.+.|+..
T Consensus 77 ~V~~a~~ 83 (111)
T 1whx_A 77 YLEWAPI 83 (111)
T ss_dssp EEEEEET
T ss_pred EEEECCC
Confidence 8888754
No 340
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.54 E-value=5.6e-15 Score=111.66 Aligned_cols=84 Identities=17% Similarity=0.286 Sum_probs=70.9
Q ss_pred cccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCC
Q 013840 7 EKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (435)
Q Consensus 7 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~ 86 (435)
......+.++|||+|||+++|+++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|++.|++.. +.|
T Consensus 9 ~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g-- 80 (96)
T 1fjc_A 9 TSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAE-IDG-- 80 (96)
T ss_dssp TTSTTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEE-ETT--
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCE-ECC--
Confidence 34556678999999999999999999999999987655 3358899999999999999999999999875 444
Q ss_pred CceeeeccCchh
Q 013840 87 SPLQVKYADGEL 98 (435)
Q Consensus 87 ~~i~~~~~~~~~ 98 (435)
+.|.+.++.+..
T Consensus 81 ~~l~v~~a~~~~ 92 (96)
T 1fjc_A 81 RSVSLYYTGEKG 92 (96)
T ss_dssp EEEEEEECSSSC
T ss_pred eEEEEEEcCCCC
Confidence 889988886543
No 341
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.54 E-value=2.5e-15 Score=144.61 Aligned_cols=80 Identities=23% Similarity=0.496 Sum_probs=71.9
Q ss_pred cceEEEecCCCCCCHHHHHHhhhccCCeeEEEEecCC-CCCcccEEEEEeCCHHHHHHHHHHHcCCCcCCCCcceEEEEe
Q 013840 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGS-QQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKW 180 (435)
Q Consensus 102 ~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~-~~~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l~v~~ 180 (435)
.++|||+|||..+++++|.++|+.||.|..|.|+.+. ++.++|||||+|.+.++|..||+.|||.. |.|+. |.|.+
T Consensus 102 ~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~-i~gr~--i~V~~ 178 (437)
T 3pgw_S 102 FKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKK-IDGRR--VLVDV 178 (437)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCE-ECCEE--EEEEE
Confidence 4689999999999999999999999999999998875 78889999999999999999999999976 77776 67777
Q ss_pred cCCH
Q 013840 181 ADTE 184 (435)
Q Consensus 181 a~~~ 184 (435)
+...
T Consensus 179 a~~~ 182 (437)
T 3pgw_S 179 ERGR 182 (437)
T ss_pred eCCC
Confidence 7653
No 342
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.53 E-value=2.3e-14 Score=109.70 Aligned_cols=79 Identities=22% Similarity=0.344 Sum_probs=68.6
Q ss_pred CccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCce
Q 013840 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (435)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i 89 (435)
...+.++|||+|||+++|+++|+++|+.||.|..++++ ++||||+|.+.++|++|++.||+..+ .+ +.|
T Consensus 7 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~-~g--~~l 75 (103)
T 2dgu_A 7 GMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDL-EG--ENI 75 (103)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEE-TT--EEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCcc-CC--CEE
Confidence 34567999999999999999999999999999999875 35999999999999999999999864 44 889
Q ss_pred eeeccCchhc
Q 013840 90 QVKYADGELE 99 (435)
Q Consensus 90 ~~~~~~~~~~ 99 (435)
.+.++.+...
T Consensus 76 ~v~~a~~~~~ 85 (103)
T 2dgu_A 76 EIVFAKPPDQ 85 (103)
T ss_dssp EEEECCCCCC
T ss_pred EEEEcCCCcc
Confidence 9988865543
No 343
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=6.6e-15 Score=114.94 Aligned_cols=67 Identities=22% Similarity=0.462 Sum_probs=61.4
Q ss_pred CccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCC---CCccceEEEEeCCHHHHHHHHHHhc
Q 013840 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTT---RASRGCCFVICPSRQEADKAVNACH 77 (435)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~---~~~~g~afV~f~~~e~a~~al~~l~ 77 (435)
....+++|||+|||+++|+++|+++|++||.|. +.++.++.+ ++++|||||+|.+.++|++||+.|+
T Consensus 4 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~ 73 (114)
T 2dnl_A 4 GSSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL 73 (114)
T ss_dssp SSSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE
T ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh
Confidence 345679999999999999999999999999999 888888776 6899999999999999999999984
No 344
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=8.3e-14 Score=104.81 Aligned_cols=78 Identities=18% Similarity=0.182 Sum_probs=66.7
Q ss_pred CceEEEeCCC-------CCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEE
Q 013840 349 GANLFIYHIP-------QEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKL 421 (435)
Q Consensus 349 ~~~v~V~nLp-------~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i 421 (435)
...|.|+-.. ..+|+++|+++|++||+|.+|.|+ ++++|||||+|.+.++|..|++.+++ +.|++|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeE
Confidence 4577777654 458999999999999999999997 35799999999999999999998555 679999
Q ss_pred EEEEccCCcCCC
Q 013840 422 KVQLKRDNKQNK 433 (435)
Q Consensus 422 ~v~~a~~~~~~~ 433 (435)
+|+|++.+...+
T Consensus 83 ~V~~a~~~~~~~ 94 (100)
T 2d9o_A 83 KISWLEGQPQDA 94 (100)
T ss_dssp EEECSSCCCCCC
T ss_pred EEEEccCCCCCC
Confidence 999999876543
No 345
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.53 E-value=4.4e-14 Score=115.21 Aligned_cols=81 Identities=12% Similarity=0.156 Sum_probs=69.6
Q ss_pred cCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCceee
Q 013840 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 91 (435)
Q Consensus 12 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~~ 91 (435)
..-.+|||+||++.+|+++|+++|++||.|.+|+++.++ .+|||||+|.+.++|++|++.|||..+.+ ..+.|++
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g-~g~~L~V 118 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYN-ACCTLRI 118 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSS-SCSCEEE
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecC-CCcEEEE
Confidence 344678999999999999999999999999999987543 56899999999999999999999987543 3488999
Q ss_pred eccCch
Q 013840 92 KYADGE 97 (435)
Q Consensus 92 ~~~~~~ 97 (435)
.|+.+.
T Consensus 119 ~~Ak~~ 124 (164)
T 1sjr_A 119 DFSKLT 124 (164)
T ss_dssp EECSSS
T ss_pred EEecCC
Confidence 988754
No 346
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.53 E-value=3e-14 Score=110.48 Aligned_cols=76 Identities=17% Similarity=0.378 Sum_probs=66.7
Q ss_pred CccCCceEEEecCCCC-CCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCc
Q 013840 10 SSEERVKLFVGQVPKH-MTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (435)
Q Consensus 10 ~~~~~~~l~v~nLp~~-~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~ 88 (435)
....+++|||+|||++ +|+++|+++|+.||.|..|++ .+|||||+|.+.++|++|++.|++..+ .| +.
T Consensus 23 ~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~-~g--~~ 91 (110)
T 1wf1_A 23 PKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVL-AG--QT 91 (110)
T ss_dssp CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEE-TT--EE
T ss_pred CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEE-CC--eE
Confidence 3445689999999999 999999999999999999988 467999999999999999999999764 44 88
Q ss_pred eeeeccCc
Q 013840 89 LQVKYADG 96 (435)
Q Consensus 89 i~~~~~~~ 96 (435)
|.+.++..
T Consensus 92 l~V~~a~~ 99 (110)
T 1wf1_A 92 LDINMAGE 99 (110)
T ss_dssp CCEEESCC
T ss_pred EEEEECCC
Confidence 88888764
No 347
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.52 E-value=1.9e-14 Score=106.68 Aligned_cols=81 Identities=22% Similarity=0.292 Sum_probs=61.8
Q ss_pred cCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCc
Q 013840 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (435)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~ 88 (435)
......++|||+|||+++|+++|+++|++||.|.+++++.+ ++|||||+|.+.++|++ +++.. +.+.++.
T Consensus 6 ~~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~-~~~~g~~ 75 (89)
T 3d2w_A 6 HHHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGED-LIIKGIS 75 (89)
T ss_dssp -----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCE-EEETTEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCC-cccCCEE
Confidence 45567899999999999999999999999999999998764 67999999999999984 44543 3345588
Q ss_pred eeeeccCchhc
Q 013840 89 LQVKYADGELE 99 (435)
Q Consensus 89 i~~~~~~~~~~ 99 (435)
+.+.++.++..
T Consensus 76 v~v~~a~~k~~ 86 (89)
T 3d2w_A 76 VHISNAEPKHN 86 (89)
T ss_dssp EEEEECC----
T ss_pred EEEEEcCCCCc
Confidence 88888876543
No 348
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.52 E-value=1.3e-14 Score=111.37 Aligned_cols=78 Identities=13% Similarity=0.188 Sum_probs=66.4
Q ss_pred ceEEEecC----CCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCC----HHH----HHHHHH--HhcCCC
Q 013840 15 VKLFVGQV----PKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPS----RQE----ADKAVN--ACHNKK 80 (435)
Q Consensus 15 ~~l~v~nL----p~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~----~e~----a~~al~--~l~~~~ 80 (435)
..|||+|| |+.+++++|+++|+.||+|.++.++.|+.|++++|||||+|.+ +++ |.+|+. .+++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 434 788888 677765
Q ss_pred cCCCCCCceeeeccC
Q 013840 81 TLPGASSPLQVKYAD 95 (435)
Q Consensus 81 ~~~~~~~~i~~~~~~ 95 (435)
++| +.|+|....
T Consensus 83 -I~G--r~irV~ln~ 94 (136)
T 2j8a_A 83 -IMG--FKFEVILNK 94 (136)
T ss_dssp -ETT--EEEEEEECC
T ss_pred -ecC--cEEEEEECc
Confidence 444 777776543
No 349
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=3.8e-14 Score=106.50 Aligned_cols=79 Identities=23% Similarity=0.302 Sum_probs=66.7
Q ss_pred CccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCce
Q 013840 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (435)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i 89 (435)
.....++|||+|||+++|+++|+++|+.||.|.+| +.++.+++ ||||+|.+.++|++||+ |++.. +.| +.|
T Consensus 4 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~-~~g--~~l 74 (94)
T 2e5g_A 4 GSSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHS-LGG--HRL 74 (94)
T ss_dssp CCTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCE-ETT--EEC
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeE-ECC--EEE
Confidence 45567899999999999999999999999999987 56665554 99999999999999999 98875 444 788
Q ss_pred eeeccCch
Q 013840 90 QVKYADGE 97 (435)
Q Consensus 90 ~~~~~~~~ 97 (435)
.+.++...
T Consensus 75 ~V~~a~~~ 82 (94)
T 2e5g_A 75 RVRPREQK 82 (94)
T ss_dssp CCBCSCCS
T ss_pred EEEECCcC
Confidence 88777544
No 350
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.8e-14 Score=108.14 Aligned_cols=80 Identities=23% Similarity=0.358 Sum_probs=67.2
Q ss_pred CccCCceEEEecCCCCCCHHHHHHHHhccCc-eeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcC-CCcCCCCCC
Q 013840 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFAL-VDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHN-KKTLPGASS 87 (435)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~-i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~-~~~~~~~~~ 87 (435)
.....++|||+|||+++|+++|+++|+.||. |..+.+. ++|||||+|.+.++|.+|++.||+ .. +.| +
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~-~~g--~ 73 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVE-LHG--K 73 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCE-ETT--E
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCee-ECC--E
Confidence 4567789999999999999999999999999 6655542 467999999999999999999999 54 444 8
Q ss_pred ceeeeccCchhc
Q 013840 88 PLQVKYADGELE 99 (435)
Q Consensus 88 ~i~~~~~~~~~~ 99 (435)
.|.+.++.+...
T Consensus 74 ~l~v~~a~~~~~ 85 (93)
T 2cqh_A 74 IMEVDYSVSKKL 85 (93)
T ss_dssp ECEEEECCCCCC
T ss_pred EEEEEEccCccc
Confidence 899988876543
No 351
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=1e-13 Score=100.54 Aligned_cols=74 Identities=15% Similarity=0.167 Sum_probs=62.4
Q ss_pred CCce-EEEecCCCCCCHHH----HHHHHhcc-CceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCC
Q 013840 13 ERVK-LFVGQVPKHMTEAQ----LLAMFKEF-ALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (435)
Q Consensus 13 ~~~~-l~v~nLp~~~t~~~----l~~~f~~~-g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~ 86 (435)
++.| |||+|||+++++++ |+++|+.| |+|.+| ++ |+|||.|.+.++|++|++.|+|..+ . +
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l-~--g 73 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDV-F--G 73 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCS-S--S
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCcc-C--C
Confidence 4445 99999999999988 55899999 599887 33 8999999999999999999999875 3 3
Q ss_pred CceeeeccCchhc
Q 013840 87 SPLQVKYADGELE 99 (435)
Q Consensus 87 ~~i~~~~~~~~~~ 99 (435)
+++++.++....+
T Consensus 74 r~i~v~~A~~~sd 86 (96)
T 2diu_A 74 NRIIVSFTPKNRE 86 (96)
T ss_dssp SCCEEESSCCSCC
T ss_pred ceEEEEecCCCcc
Confidence 8999998876543
No 352
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.51 E-value=1.3e-13 Score=107.90 Aligned_cols=76 Identities=21% Similarity=0.205 Sum_probs=65.1
Q ss_pred ceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccce-EEEEeCCHHHHHHHHHHhcCCCcCCCCCCceeeec
Q 013840 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGC-CFVICPSRQEADKAVNACHNKKTLPGASSPLQVKY 93 (435)
Q Consensus 15 ~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~-afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~~~~ 93 (435)
..|||+|||+.+|+++|+++|++||.|.+|+++.. .|| |||+|.+.++|..|++.|||..+.+ ..+.|++.+
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g-~~~~l~V~~ 98 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYA-GCCTLKIEY 98 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBT-TBSEEEEEC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecC-CCeEEEEEE
Confidence 44689999999999999999999999999998652 276 9999999999999999999987543 336888888
Q ss_pred cCch
Q 013840 94 ADGE 97 (435)
Q Consensus 94 ~~~~ 97 (435)
+.+.
T Consensus 99 Ak~~ 102 (124)
T 2e5i_A 99 ARPT 102 (124)
T ss_dssp CSCS
T ss_pred ecCC
Confidence 8654
No 353
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.50 E-value=5.4e-14 Score=109.83 Aligned_cols=63 Identities=19% Similarity=0.198 Sum_probs=56.8
Q ss_pred cCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCc
Q 013840 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKT 81 (435)
Q Consensus 12 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~ 81 (435)
...++|||+|||+++|+++|+++|+.||.|..|.++.+ |||||+|.+.++|++||+.||+..+
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~ 76 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKF 76 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEE
Confidence 45789999999999999999999999999999998765 7999999999999999999999864
No 354
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.50 E-value=3.8e-14 Score=105.08 Aligned_cols=75 Identities=15% Similarity=0.248 Sum_probs=66.1
Q ss_pred cCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCceee
Q 013840 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 91 (435)
Q Consensus 12 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~~ 91 (435)
...++|||+|||+++++++|+++|++| .|.++++. +++|||||+|.+.++|++|++.||+..+ .| +.+++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~-~g--~~l~V 72 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSF-RG--KDLIV 72 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEE-TT--EEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeE-CC--cEEEE
Confidence 457899999999999999999999999 89999883 5788999999999999999999999864 44 88888
Q ss_pred eccCc
Q 013840 92 KYADG 96 (435)
Q Consensus 92 ~~~~~ 96 (435)
.++..
T Consensus 73 ~~a~~ 77 (88)
T 1wg1_A 73 QLQPT 77 (88)
T ss_dssp EECCC
T ss_pred EEcCC
Confidence 88754
No 355
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.50 E-value=7.1e-14 Score=109.72 Aligned_cols=80 Identities=11% Similarity=0.165 Sum_probs=68.3
Q ss_pred cCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccce-EEEEeCCHHHHHHHHHHhcCCCcCCCCCCcee
Q 013840 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGC-CFVICPSRQEADKAVNACHNKKTLPGASSPLQ 90 (435)
Q Consensus 12 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~-afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~ 90 (435)
..-..|||+||++.+|+++|+++|++||.|.+|+++.+. +|+ |||+|.+.++|++|++.|||..+.++ .+.++
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~-~~~Lr 99 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNA-CCTLR 99 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETT-EEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCC-CcEEE
Confidence 444677899999999999999999999999999987643 467 99999999999999999999986553 36788
Q ss_pred eeccCch
Q 013840 91 VKYADGE 97 (435)
Q Consensus 91 ~~~~~~~ 97 (435)
+.|+...
T Consensus 100 I~~ak~~ 106 (130)
T 3zzy_A 100 IDFSKLT 106 (130)
T ss_dssp EEECSCS
T ss_pred EEecCCC
Confidence 8888654
No 356
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.49 E-value=1e-14 Score=118.97 Aligned_cols=87 Identities=22% Similarity=0.379 Sum_probs=71.0
Q ss_pred cCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEE--E---EecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCC
Q 013840 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVN--I---IKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLP 83 (435)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~--~---~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~ 83 (435)
....++++|||+|||+++|+++|+++|+.||.|..+. + +....++.++|||||+|.+.++|.+||+.||+..+ .
T Consensus 40 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~-~ 118 (143)
T 3egn_A 40 EPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVL-F 118 (143)
T ss_dssp CCCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEE-T
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEe-C
Confidence 3456789999999999999999999999999987641 1 11123588999999999999999999999999864 4
Q ss_pred CCCCceeeeccCchh
Q 013840 84 GASSPLQVKYADGEL 98 (435)
Q Consensus 84 ~~~~~i~~~~~~~~~ 98 (435)
| +.|.+.++....
T Consensus 119 g--~~l~V~~a~~~~ 131 (143)
T 3egn_A 119 G--KPMVVQFARSAR 131 (143)
T ss_dssp T--EECEEEECCCSC
T ss_pred C--cEEEEEECCCCC
Confidence 4 888888886543
No 357
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=1.5e-13 Score=103.90 Aligned_cols=84 Identities=24% Similarity=0.343 Sum_probs=70.8
Q ss_pred cccccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCC
Q 013840 5 KKEKKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (435)
Q Consensus 5 ~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~ 84 (435)
........+.++|||+|| ++|+++|+++|++||.|..|.+. .++|||||+|.+.++|.+||+.|++..+ .
T Consensus 6 ~~~~~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~-~- 75 (97)
T 1x5p_A 6 SGERRAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQV-E- 75 (97)
T ss_dssp SSCCCCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEE-T-
T ss_pred CCccCCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeE-C-
Confidence 344556678899999996 99999999999999999999883 4668999999999999999999999864 4
Q ss_pred CCCceeeeccCchhc
Q 013840 85 ASSPLQVKYADGELE 99 (435)
Q Consensus 85 ~~~~i~~~~~~~~~~ 99 (435)
++.|.+.++.+...
T Consensus 76 -g~~l~v~~a~~~~~ 89 (97)
T 1x5p_A 76 -SVQLKVNIARKQPM 89 (97)
T ss_dssp -TEEEEEECCSSCCC
T ss_pred -CeEEEEEECCCCCC
Confidence 48899988866443
No 358
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.47 E-value=2.5e-13 Score=103.60 Aligned_cols=84 Identities=11% Similarity=0.031 Sum_probs=71.7
Q ss_pred CccCCceEEEecCCC-----CCCHHHHHHHHhccCceeEEEEEecCCC-CCccceEEEEeCCHHHHHHHHHHhcCCCcCC
Q 013840 10 SSEERVKLFVGQVPK-----HMTEAQLLAMFKEFALVDEVNIIKDKTT-RASRGCCFVICPSRQEADKAVNACHNKKTLP 83 (435)
Q Consensus 10 ~~~~~~~l~v~nLp~-----~~t~~~l~~~f~~~g~i~~~~~~~~~~~-~~~~g~afV~f~~~e~a~~al~~l~~~~~~~ 83 (435)
...++++|+|+||.. +.++++|++.|++||.|.+++++.++.+ +.++|+|||+|.+.++|.+|++.|||..+ .
T Consensus 4 ~~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~-~ 82 (105)
T 2pe8_A 4 GKCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYF-G 82 (105)
T ss_dssp GGSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEE-T
T ss_pred CCCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEE-C
Confidence 356789999999963 3478999999999999999999998654 67899999999999999999999999864 4
Q ss_pred CCCCceeeeccCc
Q 013840 84 GASSPLQVKYADG 96 (435)
Q Consensus 84 ~~~~~i~~~~~~~ 96 (435)
| +.|.+.++..
T Consensus 83 G--r~i~v~~a~~ 93 (105)
T 2pe8_A 83 G--RVVKACFYNL 93 (105)
T ss_dssp T--EECEEEECCH
T ss_pred C--cEEEEEEcCH
Confidence 4 8888888764
No 359
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.46 E-value=1.7e-13 Score=101.43 Aligned_cols=72 Identities=25% Similarity=0.395 Sum_probs=62.0
Q ss_pred ccCCceEEEecCCCCCCHHHHHHHHhcc----C-------ceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCC
Q 013840 11 SEERVKLFVGQVPKHMTEAQLLAMFKEF----A-------LVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNK 79 (435)
Q Consensus 11 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~----g-------~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~ 79 (435)
..+.++|||+|||+++|+++|+++|+.| | .|.++++..+ +|||||+|.+.++|.+|+ .||+.
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~ 75 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGI 75 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCC
Confidence 4567899999999999999999999999 8 8999888654 679999999999999999 99987
Q ss_pred CcCCCCCCceeee
Q 013840 80 KTLPGASSPLQVK 92 (435)
Q Consensus 80 ~~~~~~~~~i~~~ 92 (435)
.+ .| +.+++.
T Consensus 76 ~~-~g--~~l~V~ 85 (87)
T 2hzc_A 76 IF-QG--QSLKIR 85 (87)
T ss_dssp EE-TT--EECEEE
T ss_pred EE-CC--eEEEEe
Confidence 64 44 666654
No 360
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.45 E-value=2.2e-13 Score=105.21 Aligned_cols=77 Identities=17% Similarity=0.155 Sum_probs=66.4
Q ss_pred CCceEEEeCC--CCCC--------CHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeC
Q 013840 348 PGANLFIYHI--PQEF--------GDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLG 417 (435)
Q Consensus 348 ~~~~v~V~nL--p~~~--------t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~ 417 (435)
++++|.|+|+ +.+. .++||++.|++||.|.+|.|.++. ++|+|||+|.+.++|.+|++.|||++++
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 5689999999 3331 246999999999999999996542 5899999999999999999999999999
Q ss_pred CeEEEEEEccC
Q 013840 418 GKKLKVQLKRD 428 (435)
Q Consensus 418 gr~i~v~~a~~ 428 (435)
||.|+|.|+..
T Consensus 82 GR~i~v~~~~~ 92 (114)
T 3s6e_A 82 GKMITAAYVPL 92 (114)
T ss_dssp TEECEEEEECH
T ss_pred CEEEEEEEEcH
Confidence 99999999753
No 361
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.43 E-value=1.3e-13 Score=117.95 Aligned_cols=80 Identities=16% Similarity=0.255 Sum_probs=69.8
Q ss_pred cCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCceee
Q 013840 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 91 (435)
Q Consensus 12 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~~ 91 (435)
...++|||+|||+++|+++|+++|+.||.|..|++..+.. +.++|||||+|.+.++|++|++.++. .+.| +.|.+
T Consensus 107 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~-~~~kG~aFVeF~~~e~A~~A~~~~~~--~~~G--r~l~V 181 (193)
T 2voo_A 107 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQ--KYKE--TDLLI 181 (193)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTT-CCEEEEEEEEESSHHHHHHHHHCTTC--EETT--EECEE
T ss_pred cccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCC-CCcccEEEEEECCHHHHHHHHHhCCC--eECC--EEEEE
Confidence 3468999999999999999999999999999999999874 88999999999999999999987653 3555 77887
Q ss_pred eccCc
Q 013840 92 KYADG 96 (435)
Q Consensus 92 ~~~~~ 96 (435)
.+...
T Consensus 182 ~~~~~ 186 (193)
T 2voo_A 182 LFKDD 186 (193)
T ss_dssp EETTT
T ss_pred EEhHH
Confidence 77653
No 362
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.43 E-value=5e-13 Score=105.06 Aligned_cols=80 Identities=23% Similarity=0.350 Sum_probs=67.7
Q ss_pred ccCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCC
Q 013840 8 KKSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (435)
Q Consensus 8 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~ 87 (435)
......+++|||+|| ++|+++|+++|+.||.|.+|.+. .++|||||+|.+.++|.+|++.|++..+ .| +
T Consensus 33 ~~~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~-~g--~ 101 (121)
T 2bz2_A 33 RRAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQV-ES--V 101 (121)
T ss_dssp --CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBC-SS--C
T ss_pred CCCCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEE-CC--e
Confidence 445567899999996 79999999999999999999885 4668999999999999999999999864 44 8
Q ss_pred ceeeeccCchh
Q 013840 88 PLQVKYADGEL 98 (435)
Q Consensus 88 ~i~~~~~~~~~ 98 (435)
.|.+.++.+..
T Consensus 102 ~l~V~~a~~~~ 112 (121)
T 2bz2_A 102 QLKVNIARKQP 112 (121)
T ss_dssp BCEEEECCSSC
T ss_pred EEEEEEeCCCC
Confidence 88988886543
No 363
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=2.3e-13 Score=100.87 Aligned_cols=78 Identities=24% Similarity=0.293 Sum_probs=63.6
Q ss_pred cCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCceee
Q 013840 12 EERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPLQV 91 (435)
Q Consensus 12 ~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i~~ 91 (435)
.++++|||+|||+++|+++|+++|+.||.|.+++++.+ ++|||||+|.+.++|+++ ++.. +...++.+.+
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~----~~~~-~~~~g~~l~v 72 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSL----CGED-LIIKGISVHI 72 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHT----TTCE-EEETTEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHH----hcCC-ceeCCEEEEE
Confidence 46789999999999999999999999999999998754 678999999999999864 3332 3334588888
Q ss_pred eccCchhc
Q 013840 92 KYADGELE 99 (435)
Q Consensus 92 ~~~~~~~~ 99 (435)
.++.+...
T Consensus 73 ~~a~~~~~ 80 (88)
T 1wf0_A 73 SNAEPKHN 80 (88)
T ss_dssp ECCCCCCC
T ss_pred EecCCCCC
Confidence 88766543
No 364
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.39 E-value=6.2e-13 Score=122.47 Aligned_cols=75 Identities=16% Similarity=0.255 Sum_probs=65.6
Q ss_pred CCCceEEEeC--CCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeC---Ce--
Q 013840 347 PPGANLFIYH--IPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLG---GK-- 419 (435)
Q Consensus 347 ~~~~~v~V~n--Lp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~---gr-- 419 (435)
.++.+|||+| |+..+|+++|+++|++||+|.+|.+.. ++|||||+|.+.++|++|++.|||..+- |+
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~ 89 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 89 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCce
Confidence 4678999999 578999999999999999999987743 3699999999999999999999999883 44
Q ss_pred EEEEEEcc
Q 013840 420 KLKVQLKR 427 (435)
Q Consensus 420 ~i~v~~a~ 427 (435)
.|+|.|+.
T Consensus 90 ~ly~~~~~ 97 (345)
T 3tht_A 90 TLYLNFVE 97 (345)
T ss_dssp ECEEEECS
T ss_pred EEEEEEee
Confidence 68888874
No 365
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=2.4e-12 Score=92.48 Aligned_cols=75 Identities=28% Similarity=0.484 Sum_probs=65.0
Q ss_pred CCCCceEEEeCCC----CCCCH----HHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeC
Q 013840 346 GPPGANLFIYHIP----QEFGD----QELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLG 417 (435)
Q Consensus 346 ~~~~~~v~V~nLp----~~~t~----~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~ 417 (435)
+|+..||+|.-.+ .++-. .+|.+.|+.||+|+.++|..++ +||+|.+.++|.+|+. |||..+.
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~ 74 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELL 74 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEET
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeC
Confidence 4577899998876 24444 6899999999999999998763 8999999999999998 9999999
Q ss_pred CeEEEEEEccCC
Q 013840 418 GKKLKVQLKRDN 429 (435)
Q Consensus 418 gr~i~v~~a~~~ 429 (435)
||.|+|++++..
T Consensus 75 Gr~LkV~lkt~d 86 (91)
T 2dnr_A 75 NRTITIALKSPS 86 (91)
T ss_dssp TEEEEEEECCCS
T ss_pred CeEEEEEeCCCC
Confidence 999999998754
No 366
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.33 E-value=2.7e-12 Score=111.99 Aligned_cols=82 Identities=22% Similarity=0.393 Sum_probs=69.0
Q ss_pred ccCCceEEEecCCCCC---------CHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCc
Q 013840 11 SEERVKLFVGQVPKHM---------TEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKT 81 (435)
Q Consensus 11 ~~~~~~l~v~nLp~~~---------t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~ 81 (435)
....++|||+|||..+ ++++|+++|++||.|.+|+++.+ +|||||+|.+.++|+.|++.|++..+
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4567999999999998 79999999999999999999753 57999999999999999999999876
Q ss_pred CC---------CCCCceeeeccCchh
Q 013840 82 LP---------GASSPLQVKYADGEL 98 (435)
Q Consensus 82 ~~---------~~~~~i~~~~~~~~~ 98 (435)
+. +.++.|.|+|+....
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC---
T ss_pred eccccccccccCCCCEEEEEEccCCC
Confidence 31 134889999987543
No 367
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=6.3e-12 Score=97.52 Aligned_cols=85 Identities=14% Similarity=0.186 Sum_probs=69.5
Q ss_pred ccccCccCCceEEEecCCCCCC-----------HHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHH
Q 013840 6 KEKKSSEERVKLFVGQVPKHMT-----------EAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVN 74 (435)
Q Consensus 6 ~~~~~~~~~~~l~v~nLp~~~t-----------~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~ 74 (435)
.....+.++++|+|+||....+ +++|+++|++||.|.+|.| .++ .++|||||+|.+.++|.+|++
T Consensus 7 ~~~~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~ 82 (112)
T 2dit_A 7 GGPSRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQ 82 (112)
T ss_dssp SCCCCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHH
T ss_pred CCCCCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHH
Confidence 3345678899999999944432 5899999999999999965 554 278999999999999999999
Q ss_pred HhcCCCcCCCCCCceeeeccCch
Q 013840 75 ACHNKKTLPGASSPLQVKYADGE 97 (435)
Q Consensus 75 ~l~~~~~~~~~~~~i~~~~~~~~ 97 (435)
.||+..+ .| +.|.+.++.+.
T Consensus 83 ~lng~~~-~g--r~l~v~~a~~~ 102 (112)
T 2dit_A 83 TLDGRWF-GG--RQITAQAWDGT 102 (112)
T ss_dssp HSTTCEE-TT--EECEEEECCSC
T ss_pred HcCCCEE-CC--cEEEEEEeCCC
Confidence 9999864 44 88998887653
No 368
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.31 E-value=4.1e-12 Score=96.90 Aligned_cols=83 Identities=18% Similarity=0.245 Sum_probs=69.4
Q ss_pred cCCceEEEecC--CCCCC--------HHHHHHHHhccCceeEEEEEecCCC--CCccceEEEEeCCHHHHHHHHHHhcCC
Q 013840 12 EERVKLFVGQV--PKHMT--------EAQLLAMFKEFALVDEVNIIKDKTT--RASRGCCFVICPSRQEADKAVNACHNK 79 (435)
Q Consensus 12 ~~~~~l~v~nL--p~~~t--------~~~l~~~f~~~g~i~~~~~~~~~~~--~~~~g~afV~f~~~e~a~~al~~l~~~ 79 (435)
.+++.|.|.|+ |.... +++|++.|++||.|.+++|.+++.+ +.++|+|||+|.+.++|.+|++.|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 57899999998 44443 3689999999999999999888754 367899999999999999999999998
Q ss_pred CcCCCCCCceeeeccCch
Q 013840 80 KTLPGASSPLQVKYADGE 97 (435)
Q Consensus 80 ~~~~~~~~~i~~~~~~~~ 97 (435)
.+ .| +.|.+.+....
T Consensus 83 ~f-~G--R~i~v~~~~~~ 97 (105)
T 3v4m_A 83 KF-AN--RVVVTKYCDPD 97 (105)
T ss_dssp EE-TT--EECEEEEECHH
T ss_pred Ee-CC--CEEEEEEeCHH
Confidence 64 44 88888877543
No 369
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.27 E-value=9.5e-12 Score=114.61 Aligned_cols=82 Identities=17% Similarity=0.287 Sum_probs=67.9
Q ss_pred ccCccCCceEEEec--CCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCC
Q 013840 8 KKSSEERVKLFVGQ--VPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGA 85 (435)
Q Consensus 8 ~~~~~~~~~l~v~n--Lp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~ 85 (435)
+-...++.+|||+| |++.+|+++|+++|++||.|.+|++.. .+|||||+|.+.++|++|++.|||..++...
T Consensus 12 ~~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~ 85 (345)
T 3tht_A 12 ETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDL 85 (345)
T ss_dssp CCCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTT
T ss_pred eecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCcccccc
Confidence 44578889999999 689999999999999999999887643 4689999999999999999999999875443
Q ss_pred CC--ceeeeccC
Q 013840 86 SS--PLQVKYAD 95 (435)
Q Consensus 86 ~~--~i~~~~~~ 95 (435)
++ .+.+.+..
T Consensus 86 g~~~~ly~~~~~ 97 (345)
T 3tht_A 86 GQKITLYLNFVE 97 (345)
T ss_dssp SCEEECEEEECS
T ss_pred CCceEEEEEEee
Confidence 33 56666653
No 370
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.25 E-value=1.2e-11 Score=96.15 Aligned_cols=82 Identities=20% Similarity=0.217 Sum_probs=68.8
Q ss_pred cCCceEEEecCC--CC---CCHHHHHHHHhccCceeEEEEEecCC----CCCccceEEEEeCCHHHHHHHHHHhcCCCcC
Q 013840 12 EERVKLFVGQVP--KH---MTEAQLLAMFKEFALVDEVNIIKDKT----TRASRGCCFVICPSRQEADKAVNACHNKKTL 82 (435)
Q Consensus 12 ~~~~~l~v~nLp--~~---~t~~~l~~~f~~~g~i~~~~~~~~~~----~~~~~g~afV~f~~~e~a~~al~~l~~~~~~ 82 (435)
.++++|+|+|+- .+ --++||++.|++||.|.+|+|+.++. ++.++|++||+|.+.++|.+|++.|||.. +
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~-f 96 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRW-F 96 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCE-E
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCE-E
Confidence 478999999993 22 23689999999999999999998864 35678999999999999999999999986 4
Q ss_pred CCCCCceeeeccCc
Q 013840 83 PGASSPLQVKYADG 96 (435)
Q Consensus 83 ~~~~~~i~~~~~~~ 96 (435)
.| +.|.+.+...
T Consensus 97 ~G--R~i~v~~~~~ 108 (118)
T 3ue2_A 97 AG--RKVVAEVYDQ 108 (118)
T ss_dssp TT--EECEEEEECH
T ss_pred CC--cEEEEEEcCh
Confidence 44 8888887654
No 371
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.22 E-value=5.1e-12 Score=96.24 Aligned_cols=72 Identities=17% Similarity=0.364 Sum_probs=59.0
Q ss_pred EecCCCCCCHHHHHHHH------------hccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCC
Q 013840 19 VGQVPKHMTEAQLLAMF------------KEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (435)
Q Consensus 19 v~nLp~~~t~~~l~~~f------------~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~ 86 (435)
+.|||+.+++++|++.| ++||.|.++++.+++. ++++|||||+|.+.++|.+|++.|||.. +.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~-~~G-- 95 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRW-FNG-- 95 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCE-ETT--
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCE-ECC--
Confidence 45666667777776665 9999999999998875 7899999999999999999999999986 444
Q ss_pred Cceeeecc
Q 013840 87 SPLQVKYA 94 (435)
Q Consensus 87 ~~i~~~~~ 94 (435)
+.|.+.++
T Consensus 96 r~i~v~~s 103 (104)
T 1jmt_A 96 QPIHAELS 103 (104)
T ss_dssp EECCEEEC
T ss_pred EEEEEEEc
Confidence 77777664
No 372
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=4.4e-11 Score=92.12 Aligned_cols=75 Identities=15% Similarity=0.110 Sum_probs=66.7
Q ss_pred CCCCceEEEeCCCCC-CCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCC-HHHHHHHHHhcC--CceeCCeEE
Q 013840 346 GPPGANLFIYHIPQE-FGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYES-PASAQNAIAMMN--GCQLGGKKL 421 (435)
Q Consensus 346 ~~~~~~v~V~nLp~~-~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~-~~~A~~A~~~l~--g~~l~gr~i 421 (435)
-+.++.|+|+||+.+ +++++|+++|+.||+|.+|.+.++.. .|||.|.+ +++|..|++.|+ +..|.|..+
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 347899999999999 99999999999999999999987753 59999999 899999999995 778899888
Q ss_pred EEEEc
Q 013840 422 KVQLK 426 (435)
Q Consensus 422 ~v~~a 426 (435)
++.+-
T Consensus 89 ~~evL 93 (121)
T 1owx_A 89 TWEVL 93 (121)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 87754
No 373
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=2.1e-10 Score=86.14 Aligned_cols=77 Identities=18% Similarity=0.250 Sum_probs=62.2
Q ss_pred cCCceEEEecCC-------CCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCC
Q 013840 12 EERVKLFVGQVP-------KHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPG 84 (435)
Q Consensus 12 ~~~~~l~v~nLp-------~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~ 84 (435)
.....|.|.-.. ..+|+++|+++|++||.|.+|.|+ ++++|||||+|.+.++|.+|++.+++ +
T Consensus 8 ~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~---~-- 77 (100)
T 2d9o_A 8 QGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG---L-- 77 (100)
T ss_dssp CSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB---C--
T ss_pred CccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC---C--
Confidence 345677776654 458999999999999999999987 36789999999999999999998544 2
Q ss_pred CCCceeeeccCchh
Q 013840 85 ASSPLQVKYADGEL 98 (435)
Q Consensus 85 ~~~~i~~~~~~~~~ 98 (435)
..+.|++.|+....
T Consensus 78 ~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 78 VDNPLKISWLEGQP 91 (100)
T ss_dssp SSSBCEEECSSCCC
T ss_pred CCCeEEEEEccCCC
Confidence 34889999886543
No 374
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=2.1e-11 Score=87.90 Aligned_cols=74 Identities=16% Similarity=0.318 Sum_probs=64.1
Q ss_pred cCCCCceEEEeCCCCC-----CCH----HHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCce
Q 013840 345 EGPPGANLFIYHIPQE-----FGD----QELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQ 415 (435)
Q Consensus 345 ~~~~~~~v~V~nLp~~-----~t~----~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~ 415 (435)
.+|+..||+|.-++.. +-. .+|.+.|+.||+|+.++|..++ +||+|.+.++|.+|++ |||..
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~ 81 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMK 81 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCee
Confidence 4567889999988643 333 5799999999999999998763 9999999999999999 99999
Q ss_pred eCCeEEEEEEcc
Q 013840 416 LGGKKLKVQLKR 427 (435)
Q Consensus 416 l~gr~i~v~~a~ 427 (435)
+.||.|+|++..
T Consensus 82 v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 82 VKGRAVKISGPS 93 (95)
T ss_dssp ETTEEEEEECCC
T ss_pred eCCeEEEEeccC
Confidence 999999999854
No 375
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.09 E-value=3.9e-10 Score=98.96 Aligned_cols=78 Identities=17% Similarity=0.269 Sum_probs=66.5
Q ss_pred ceEEEeCCC-----CCCCHHHHHHHhhcCCcEEEEEEEeeCC----CCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeE
Q 013840 350 ANLFIYHIP-----QEFGDQELGNAFQAFGRVLSAKVFVDKA----TGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKK 420 (435)
Q Consensus 350 ~~v~V~nLp-----~~~t~~~L~~~F~~fG~v~~v~i~~~~~----~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~ 420 (435)
..+.+.|+- ..-.+++|++.|++||+|.++.|+++.. +++++|++||+|.+.++|.+|++.|||+++.||.
T Consensus 125 ~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~ 204 (222)
T 3dxb_A 125 TVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRK 204 (222)
T ss_dssp SEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSB
T ss_pred ccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeE
Confidence 456666662 2235789999999999999999986543 4489999999999999999999999999999999
Q ss_pred EEEEEcc
Q 013840 421 LKVQLKR 427 (435)
Q Consensus 421 i~v~~a~ 427 (435)
|++.+..
T Consensus 205 i~~~~~~ 211 (222)
T 3dxb_A 205 VVAEVYD 211 (222)
T ss_dssp CEEEECC
T ss_pred EEEEEcC
Confidence 9999875
No 376
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.05 E-value=5.6e-10 Score=86.00 Aligned_cols=80 Identities=20% Similarity=0.258 Sum_probs=64.3
Q ss_pred CccCCceEEEecCCCCCC----------HHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCC
Q 013840 10 SSEERVKLFVGQVPKHMT----------EAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNK 79 (435)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t----------~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~ 79 (435)
.+.++++|.|.|+=.... ++||++.|++||.|.+|.+.++. .+|+|||+|.+.++|.+|++.|||.
T Consensus 3 ~p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~ 78 (114)
T 3s6e_A 3 QPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGR 78 (114)
T ss_dssp CCCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTC
T ss_pred CCCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCC
Confidence 356789999999932222 35789999999999999885543 5899999999999999999999998
Q ss_pred CcCCCCCCceeeeccCc
Q 013840 80 KTLPGASSPLQVKYADG 96 (435)
Q Consensus 80 ~~~~~~~~~i~~~~~~~ 96 (435)
. +.| +.|.+.+...
T Consensus 79 ~-f~G--R~i~v~~~~~ 92 (114)
T 3s6e_A 79 W-FAG--KMITAAYVPL 92 (114)
T ss_dssp E-ETT--EECEEEEECH
T ss_pred E-ECC--EEEEEEEEcH
Confidence 6 444 8888887643
No 377
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.96 E-value=3.4e-09 Score=81.57 Aligned_cols=82 Identities=10% Similarity=0.118 Sum_probs=65.4
Q ss_pred cccCccCCceEEEecCCCC-CCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCC-HHHHHHHHHHhcCCC-cCC
Q 013840 7 EKKSSEERVKLFVGQVPKH-MTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPS-RQEADKAVNACHNKK-TLP 83 (435)
Q Consensus 7 ~~~~~~~~~~l~v~nLp~~-~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~-~e~a~~al~~l~~~~-~~~ 83 (435)
.+-.-...+.|+|+||++. ++.++|+++|+.||.|..|.+..+.. .|||.|.+ .++|..|++.++... .+.
T Consensus 11 ~~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~ 84 (121)
T 1owx_A 11 GSLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLR 84 (121)
T ss_dssp CCCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTT
T ss_pred CcccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEe
Confidence 3455677899999999999 99999999999999999999988775 69999999 899999999986332 233
Q ss_pred CCCCceeeeccCc
Q 013840 84 GASSPLQVKYADG 96 (435)
Q Consensus 84 ~~~~~i~~~~~~~ 96 (435)
+ ..+++.....
T Consensus 85 g--~~~~~evL~G 95 (121)
T 1owx_A 85 N--KEVTWEVLEG 95 (121)
T ss_dssp S--SSEEEEECCH
T ss_pred C--cEEEEEECCC
Confidence 3 4455444433
No 378
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.71 E-value=6e-08 Score=71.19 Aligned_cols=71 Identities=11% Similarity=0.186 Sum_probs=65.8
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcC-----CcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEE
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAF-----GRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLK 422 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~f-----G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~ 422 (435)
..++|-+-|||..+++..++.+.+.+ |.|+.+.+..|. +-|+|+|.+...|.+|...|+|..|.||+|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 46899999999999999999999999 999999998874 3599999999999999999999999999999
Q ss_pred EE
Q 013840 423 VQ 424 (435)
Q Consensus 423 v~ 424 (435)
|-
T Consensus 94 ~g 95 (117)
T 2l9w_A 94 SG 95 (117)
T ss_dssp EE
T ss_pred ec
Confidence 85
No 379
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.61 E-value=8.8e-08 Score=68.80 Aligned_cols=75 Identities=16% Similarity=0.220 Sum_probs=60.0
Q ss_pred ccCCceEEEecCCC----CC-C---HHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcC
Q 013840 11 SEERVKLFVGQVPK----HM-T---EAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTL 82 (435)
Q Consensus 11 ~~~~~~l~v~nLp~----~~-t---~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~ 82 (435)
..+..||+|.-.|. .+ + ..+|.+.|+.||.|..++++.++ +||+|.+.++|.+||+ |+|.. +
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~-v 73 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKE-L 73 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCE-E
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeE-e
Confidence 35667888888772 22 3 26789999999999999998864 8999999999999998 99986 4
Q ss_pred CCCCCceeeeccCch
Q 013840 83 PGASSPLQVKYADGE 97 (435)
Q Consensus 83 ~~~~~~i~~~~~~~~ 97 (435)
.| +.+++..+.+.
T Consensus 74 ~G--r~LkV~lkt~d 86 (91)
T 2dnr_A 74 LN--RTITIALKSPS 86 (91)
T ss_dssp TT--EEEEEEECCCS
T ss_pred CC--eEEEEEeCCCC
Confidence 44 88888777654
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.47 E-value=3.1e-07 Score=80.24 Aligned_cols=82 Identities=18% Similarity=0.191 Sum_probs=64.4
Q ss_pred cCCceEEEecCC-----CCCCHHHHHHHHhccCceeEEEEEecCC----CCCccceEEEEeCCHHHHHHHHHHhcCCCcC
Q 013840 12 EERVKLFVGQVP-----KHMTEAQLLAMFKEFALVDEVNIIKDKT----TRASRGCCFVICPSRQEADKAVNACHNKKTL 82 (435)
Q Consensus 12 ~~~~~l~v~nLp-----~~~t~~~l~~~f~~~g~i~~~~~~~~~~----~~~~~g~afV~f~~~e~a~~al~~l~~~~~~ 82 (435)
..+..+.+.|+- ..-.+++|++.|++||.|.+++++.+.. ++.++|++||+|.+.++|++|++.|||.. +
T Consensus 122 ~~s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~-~ 200 (222)
T 3dxb_A 122 MESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRW-F 200 (222)
T ss_dssp CBCSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCB-S
T ss_pred cccccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCce-E
Confidence 344556665552 2234688999999999999999986543 44899999999999999999999999986 4
Q ss_pred CCCCCceeeeccCc
Q 013840 83 PGASSPLQVKYADG 96 (435)
Q Consensus 83 ~~~~~~i~~~~~~~ 96 (435)
.| +.|.+.+...
T Consensus 201 ~g--r~i~~~~~~~ 212 (222)
T 3dxb_A 201 AG--RKVVAEVYDQ 212 (222)
T ss_dssp SS--SBCEEEECCH
T ss_pred CC--eEEEEEEcCH
Confidence 44 8888887754
No 381
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.44 E-value=3.5e-07 Score=65.99 Aligned_cols=73 Identities=11% Similarity=0.183 Sum_probs=58.7
Q ss_pred CccCCceEEEecCCCC------CC---HHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCC
Q 013840 10 SSEERVKLFVGQVPKH------MT---EAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKK 80 (435)
Q Consensus 10 ~~~~~~~l~v~nLp~~------~t---~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~ 80 (435)
-..+..||+|.-++++ .+ ..+|.+.|+.||.|..++++.|+ +||+|.+.++|.+||+ |++..
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~ 81 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMK 81 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCee
Confidence 3467789999988743 33 25689999999999999998875 9999999999999998 99987
Q ss_pred cCCCCCCceeeecc
Q 013840 81 TLPGASSPLQVKYA 94 (435)
Q Consensus 81 ~~~~~~~~i~~~~~ 94 (435)
+ .| +.++++..
T Consensus 82 v-~G--r~L~V~~k 92 (95)
T 1ufw_A 82 V-KG--RAVKISGP 92 (95)
T ss_dssp E-TT--EEEEEECC
T ss_pred e-CC--eEEEEecc
Confidence 4 33 77776653
No 382
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.32 E-value=1.4e-06 Score=64.07 Aligned_cols=79 Identities=13% Similarity=0.199 Sum_probs=66.9
Q ss_pred CCceEEEeCCCCCC-C----HHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEE
Q 013840 348 PGANLFIYHIPQEF-G----DQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLK 422 (435)
Q Consensus 348 ~~~~v~V~nLp~~~-t----~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~ 422 (435)
..++|+|.||+.++ . .+.++++|..|+++.+...++.- .-..|.|.++++|.+|...||+..+.|++|+
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 34789999998876 2 26789999999999998887663 2479999999999999999999999999999
Q ss_pred EEEccCCcCC
Q 013840 423 VQLKRDNKQN 432 (435)
Q Consensus 423 v~~a~~~~~~ 432 (435)
|-|++...-+
T Consensus 78 ~YFgq~~~~~ 87 (104)
T 1wey_A 78 LYFAQTLHIG 87 (104)
T ss_dssp EECCCCSSCC
T ss_pred EEecCCCCCc
Confidence 9999865433
No 383
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.89 E-value=4.1e-05 Score=56.32 Aligned_cols=70 Identities=16% Similarity=0.230 Sum_probs=62.5
Q ss_pred cceEEEecCCCCCCHHHHHHhhhcc-----CCeeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHHcCCCcCCCCcceE
Q 013840 102 EHKLFIGMLPKNVSEAEVSALFSIY-----GTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPL 176 (435)
Q Consensus 102 ~~~l~v~~lp~~~t~~~l~~~f~~~-----g~i~~v~~~~~~~~~~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~~l 176 (435)
.++|-+-+||..++...|+.+++.+ |.+..|.+..+ .+-|+|+|.+...|-+|.-.|+|.. ++|++ |
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD-----H~GAivef~d~~~AgKasLaL~G~e-f~gr~--L 92 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD-----FNGAIIIFRDSKFAAKMLMILNGSQ-FQGKV--I 92 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT-----TTEEEEECSCHHHHHHHHHHHSSEE-ETTEE--E
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC-----CCceEEEEccchhhHHHHhhcCCee-ecCeE--E
Confidence 5789999999999999999999999 99999999887 5689999999999999999999987 77775 5
Q ss_pred EEE
Q 013840 177 VVK 179 (435)
Q Consensus 177 ~v~ 179 (435)
.+.
T Consensus 93 r~g 95 (117)
T 2l9w_A 93 RSG 95 (117)
T ss_dssp EEE
T ss_pred Eec
Confidence 553
No 384
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.80 E-value=0.00011 Score=53.05 Aligned_cols=72 Identities=11% Similarity=0.135 Sum_probs=58.4
Q ss_pred ceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCC--ccceEEEEeCCHHHHHHHHHHhcCCCcCCCCC
Q 013840 15 VKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRA--SRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (435)
Q Consensus 15 ~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~--~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~ 86 (435)
++|.||+||+.+|++++.+.++.+..+.....+..+.+.+ .-.-|||.|.+.+++....+.++|..+.+..+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg 75 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKG 75 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCC
Confidence 5899999999999999999999988777666655443332 23469999999999999999999987766544
No 385
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.79 E-value=0.00011 Score=52.90 Aligned_cols=59 Identities=24% Similarity=0.408 Sum_probs=49.6
Q ss_pred CccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhc
Q 013840 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACH 77 (435)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~ 77 (435)
.......++| +.|..+...||.++|+.||.|. |+.+.|- .|||.|.+.+.|..|+.++.
T Consensus 12 ~p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 12 QPKRDHVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCCCSEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CCCCCeEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 3444556667 9999999999999999999655 7777764 89999999999999999764
No 386
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.71 E-value=0.0003 Score=51.37 Aligned_cols=74 Identities=24% Similarity=0.363 Sum_probs=60.1
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhc-----CCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEE
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQA-----FGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLK 422 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~-----fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~ 422 (435)
-..+|.|.|||..++++.|.-+|+. =|+|.++.... +-|+|+|.+.+.|++.++. ....|.|.+|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEEE
Confidence 4579999999999999999999976 25889888754 3599999999999999885 47788888888
Q ss_pred EEEccCCc
Q 013840 423 VQLKRDNK 430 (435)
Q Consensus 423 v~~a~~~~ 430 (435)
|.=.-.+.
T Consensus 78 V~P~~~~~ 85 (104)
T 2dhx_A 78 LRPAPPRA 85 (104)
T ss_dssp EEECCCCC
T ss_pred EEcCCCCC
Confidence 86544433
No 387
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.70 E-value=0.00033 Score=51.14 Aligned_cols=89 Identities=18% Similarity=0.219 Sum_probs=65.6
Q ss_pred cCCceEEEecCCCCCCHHHHHHHHhc-----cCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCC
Q 013840 12 EERVKLFVGQVPKHMTEAQLLAMFKE-----FALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGAS 86 (435)
Q Consensus 12 ~~~~~l~v~nLp~~~t~~~l~~~f~~-----~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~ 86 (435)
....+|.|.|||..++++.|.-+|.. =|+|..+.... +-|+|.|.+.+.|++.|+.- .+.+.+
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~--~H~L~~-- 73 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQA--DHELHG-- 73 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCS--CCBSSS--
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCC--cceecC--
Confidence 45689999999999999999999976 25777776533 38999999999999998752 223444
Q ss_pred CceeeeccCchhccccceEEEecCCCCCC
Q 013840 87 SPLQVKYADGELERLEHKLFIGMLPKNVS 115 (435)
Q Consensus 87 ~~i~~~~~~~~~~~~~~~l~v~~lp~~~t 115 (435)
..+.+.... ....+++++++|++.++
T Consensus 74 ~~LsV~P~~---~~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 74 AQLSLRPAP---PRAPARLLLQGLPPGTS 99 (104)
T ss_dssp SBCEEEECC---CCCCCCCCCCSCCCCCC
T ss_pred eEEEEEcCC---CCCcceEeeecCCCCCC
Confidence 555554332 23345799999998764
No 388
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.43 E-value=0.00081 Score=48.54 Aligned_cols=78 Identities=9% Similarity=0.142 Sum_probs=60.4
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCC--CcceEEEEEeCCHHHHHHHHHhcCCceeCCe-----EEE
Q 013840 350 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATG--VSKCFGFVSYESPASAQNAIAMMNGCQLGGK-----KLK 422 (435)
Q Consensus 350 ~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g--~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr-----~i~ 422 (435)
+.|.|++||.++|++++.+.++..+++........+... ...+.|+|.|.+.+++..-...++|..+.+. +-.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 578999999999999999999999887766665443221 2345699999999999999999999987542 334
Q ss_pred EEEcc
Q 013840 423 VQLKR 427 (435)
Q Consensus 423 v~~a~ 427 (435)
|.+|-
T Consensus 82 VE~AP 86 (91)
T 1uw4_A 82 VEFAP 86 (91)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 55553
No 389
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.42 E-value=0.00074 Score=48.65 Aligned_cols=55 Identities=29% Similarity=0.437 Sum_probs=45.3
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhc
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 411 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l 411 (435)
...+++| ++|.+|...||.++|+.||.| .|+.+.| + -|||.|.+++.|..|+..+
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD--T-----sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD--T-----SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET--T-----EEEEECSCHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC--C-----eEEEEecCHHHHHHHHHhc
Confidence 4467777 999999999999999999943 4455444 2 6999999999999999876
No 390
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.41 E-value=0.00017 Score=52.10 Aligned_cols=53 Identities=26% Similarity=0.458 Sum_probs=45.6
Q ss_pred eEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhc
Q 013840 16 KLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACH 77 (435)
Q Consensus 16 ~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~ 77 (435)
.++| +.|..+...||.++|+.||.| .|+.+.|- .|||.|.+.+.|..|+.++.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 4566 999999999999999999944 37776664 89999999999999999874
No 391
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.32 E-value=0.00079 Score=50.92 Aligned_cols=70 Identities=17% Similarity=0.271 Sum_probs=57.5
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCC-eEEEEEE
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGG-KKLKVQL 425 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~g-r~i~v~~ 425 (435)
..+-|.|-+.|... ...+..+|++||+|.+...... ..+-.|.|.++.+|++||.. ||..|+| -.|-|..
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~------~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNT------GNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVKP 93 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSS------SSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEEE
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCC------CCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEEE
Confidence 46789999999875 7889999999999998876211 34899999999999999997 9999985 5566654
No 392
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.04 E-value=0.00073 Score=49.05 Aligned_cols=75 Identities=8% Similarity=0.050 Sum_probs=54.5
Q ss_pred CCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCC--ccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCC
Q 013840 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRA--SRGCCFVICPSRQEADKAVNACHNKKTLPGASS 87 (435)
Q Consensus 13 ~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~--~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~ 87 (435)
.+-+|.||.||+.+|++++.+.++.+-.+.....+..+.+.+ .-.-|||.|.+.+++....+..+|..+.+..+.
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~ 84 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGL 84 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCC
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCC
Confidence 456899999999999999998888765544332222222221 223699999999999999999998877665443
No 393
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.99 E-value=0.0011 Score=48.02 Aligned_cols=54 Identities=28% Similarity=0.431 Sum_probs=45.0
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcC
Q 013840 350 ANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMN 412 (435)
Q Consensus 350 ~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~ 412 (435)
.+++| ++|.+|...||.++|+.|| -..|+.+.| + -|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidD--T-----sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDD--T-----SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEET--T-----EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcC--C-----eEEEEecCHHHHHHHHHhcc
Confidence 56777 9999999999999999999 445555554 2 69999999999999998763
No 394
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.52 E-value=0.0037 Score=45.87 Aligned_cols=73 Identities=14% Similarity=0.172 Sum_probs=58.0
Q ss_pred CceEEEecCCCCC-CH----HHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCc
Q 013840 14 RVKLFVGQVPKHM-TE----AQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSP 88 (435)
Q Consensus 14 ~~~l~v~nLp~~~-t~----~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~ 88 (435)
.++|+|.||+.++ +. +.++++|..|+++......++-. -.-|.|.+.++|.+|-..||+..++ +..
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR------Rirv~F~~~~~A~~AR~~Lh~~~f~---g~~ 75 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK------RVRINFSNPLSAADARLRLHKTEFL---GKE 75 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT------EEEEECSSTTHHHHHHHTSTTSEET---TEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce------EEEEEeCChHHHHHHHHHhccceec---Cce
Confidence 3689999999865 33 46789999999998887777654 6799999999999999999998753 356
Q ss_pred eeeeccC
Q 013840 89 LQVKYAD 95 (435)
Q Consensus 89 i~~~~~~ 95 (435)
+++-+..
T Consensus 76 ~r~YFgq 82 (104)
T 1wey_A 76 MKLYFAQ 82 (104)
T ss_dssp CEEECCC
T ss_pred eEEEecC
Confidence 6666654
No 395
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.34 E-value=0.0038 Score=45.26 Aligned_cols=77 Identities=14% Similarity=0.261 Sum_probs=54.3
Q ss_pred ceEEEecCCCCCCHHHHHHhhhccCCeeEEEEecCCCCC------cccEEEEEeCCHHHHHHHHHHHcCCCcCCCCcc--
Q 013840 103 HKLFIGMLPKNVSEAEVSALFSIYGTIKDLQILRGSQQT------SKGCAFLKYETKEQALAALEAINGKHKMEGSSV-- 174 (435)
Q Consensus 103 ~~l~v~~lp~~~t~~~l~~~f~~~g~i~~v~~~~~~~~~------~~g~afV~f~~~e~a~~a~~~l~~~~~~~g~~~-- 174 (435)
.+|.||.||+.+|++++.+.++..-++ .......|. .-.-|||.|.+.++.....+..+|..+++.+.-
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~~---d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~ 86 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPAH---DYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEY 86 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSSE---EECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEE
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCcc---ceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEe
Confidence 358899999999999988888766443 333222221 126789999999999999999998876665432
Q ss_pred eEEEEecC
Q 013840 175 PLVVKWAD 182 (435)
Q Consensus 175 ~l~v~~a~ 182 (435)
+..|.+|.
T Consensus 87 ~a~VE~AP 94 (97)
T 2l08_A 87 PAVVEFAP 94 (97)
T ss_dssp EEEEEECC
T ss_pred eeEEEecC
Confidence 33455543
No 396
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.33 E-value=0.019 Score=43.41 Aligned_cols=74 Identities=15% Similarity=0.136 Sum_probs=53.4
Q ss_pred CccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCCcCCCCCCce
Q 013840 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHNKKTLPGASSPL 89 (435)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~~~~~~~~~~~i 89 (435)
+....+.|.|-+.|+.. -..|...|++||.|.+.... ....+..|+|.+..+|++||.. |+.. +.+ ...|
T Consensus 20 ~~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~k-NG~i-i~g-~~mI 89 (119)
T 1wwh_A 20 DHLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALSK-DGRI-FGE-SIMI 89 (119)
T ss_dssp -CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHTT-TTCE-ETT-TEEC
T ss_pred CCCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHHh-CCeE-ecC-CEEE
Confidence 34567899999999986 46777889999999877651 1223999999999999999964 5653 332 2444
Q ss_pred eeec
Q 013840 90 QVKY 93 (435)
Q Consensus 90 ~~~~ 93 (435)
-++.
T Consensus 90 GV~p 93 (119)
T 1wwh_A 90 GVKP 93 (119)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4444
No 397
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.97 E-value=0.017 Score=44.26 Aligned_cols=76 Identities=24% Similarity=0.417 Sum_probs=54.4
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhcCCcEEE-EEEEeeC--------CCC-----CcceEEEEEeCCHHHHHHHHHhcCCc
Q 013840 349 GANLFIYHIPQEFGDQELGNAFQAFGRVLS-AKVFVDK--------ATG-----VSKCFGFVSYESPASAQNAIAMMNGC 414 (435)
Q Consensus 349 ~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~-v~i~~~~--------~~g-----~~~g~afV~F~~~~~A~~A~~~l~g~ 414 (435)
..-|.|-+.|... ...+.++|++||.|.. +.+.++. ... ....+--|+|.++.+|.+|+.. ||.
T Consensus 7 e~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NGA 84 (132)
T ss_dssp -CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TTC
T ss_pred ceEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CCe
Confidence 4567788888765 5678899999999866 2211100 000 1245889999999999999997 999
Q ss_pred eeCCeEEEEEEc
Q 013840 415 QLGGKKLKVQLK 426 (435)
Q Consensus 415 ~l~gr~i~v~~a 426 (435)
.|.|.-|-|..-
T Consensus 85 ii~G~mIGV~Py 96 (132)
T 3p3d_A 85 VFNGVLLGVIPY 96 (132)
T ss_dssp EETTEECEEEEC
T ss_pred EeCcEEEEEEEC
Confidence 999987777643
No 398
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.97 E-value=0.0038 Score=59.48 Aligned_cols=56 Identities=13% Similarity=0.232 Sum_probs=42.7
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHh
Q 013840 349 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAM 410 (435)
Q Consensus 349 ~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 410 (435)
.++|+|. .|..+++.+|.++|++||.|.++....++ | -||.|+|.+.+++..++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--G---LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--S---EEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--C---eEEEEEeCCHHHHHHHHhc
Confidence 3899998 69999999999999999999999886553 3 6999999999999977654
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.70 E-value=0.0026 Score=60.60 Aligned_cols=61 Identities=10% Similarity=0.215 Sum_probs=46.3
Q ss_pred cCccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHH
Q 013840 9 KSSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNA 75 (435)
Q Consensus 9 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~ 75 (435)
+..+..++|+|. .|...++.+|.+.|+.||+|.++.+.+++. -||.|+|.+.+++..++..
T Consensus 48 r~~qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g-----~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 48 RREQAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG-----LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HHHHHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS-----EEEEEECC---CCHHHHSS
T ss_pred HHHHhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC-----eEEEEEeCCHHHHHHHHhc
Confidence 445667899997 799999999999999999999998876653 4999999999999977643
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=93.96 E-value=0.096 Score=40.12 Aligned_cols=76 Identities=26% Similarity=0.382 Sum_probs=51.7
Q ss_pred cceEEEecCCCCCCHHHHHHhhhccCCeeE-EEEecCC---------CC-----CcccEEEEEeCCHHHHHHHHHHHcCC
Q 013840 102 EHKLFIGMLPKNVSEAEVSALFSIYGTIKD-LQILRGS---------QQ-----TSKGCAFLKYETKEQALAALEAINGK 166 (435)
Q Consensus 102 ~~~l~v~~lp~~~t~~~l~~~f~~~g~i~~-v~~~~~~---------~~-----~~~g~afV~f~~~e~a~~a~~~l~~~ 166 (435)
+..|.|-++|+..+ ..|.+.|++||.|.+ +.+.+.. .. .......|+|++..+|.+|+. .||.
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 45688999977554 458889999999875 2222100 00 135688999999999999997 5775
Q ss_pred CcCCCCcceEEEEecC
Q 013840 167 HKMEGSSVPLVVKWAD 182 (435)
Q Consensus 167 ~~~~g~~~~l~v~~a~ 182 (435)
+++|+ .|-|.+..
T Consensus 85 -ii~G~--mIGV~Py~ 97 (132)
T 3p3d_A 85 -VFNGV--LLGVIPYT 97 (132)
T ss_dssp -EETTE--ECEEEECC
T ss_pred -EeCcE--EEEEEECC
Confidence 47876 36665553
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=90.90 E-value=0.79 Score=44.53 Aligned_cols=57 Identities=25% Similarity=0.402 Sum_probs=46.2
Q ss_pred CCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcC
Q 013840 13 ERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNACHN 78 (435)
Q Consensus 13 ~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l~~ 78 (435)
....++|+ +|..+...+|.++|+.||.+ .|+.+.+. .|||.|.+.+.|..+++.++.
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt-------~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS-------EEEEECSCHHHHHHHHHHHTT
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC-------eEEEEECCHHHHHHHHHHHHh
Confidence 34566676 99999999999999999954 36554443 899999999999999998854
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=88.15 E-value=1.2 Score=43.32 Aligned_cols=55 Identities=27% Similarity=0.420 Sum_probs=44.8
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcC
Q 013840 349 GANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMN 412 (435)
Q Consensus 349 ~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~ 412 (435)
+.+++|+ +|..|...+|.+.|+.||.| +|+.+-+ ..|||.|.+++.|..++..+.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHH
Confidence 4577787 89999999999999999953 4444333 269999999999999999874
No 403
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=73.15 E-value=11 Score=30.39 Aligned_cols=54 Identities=9% Similarity=0.131 Sum_probs=39.1
Q ss_pred ceEEEeCCCC-C--------CCHHHHHHHh--hcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHH
Q 013840 350 ANLFIYHIPQ-E--------FGDQELGNAF--QAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQN 406 (435)
Q Consensus 350 ~~v~V~nLp~-~--------~t~~~L~~~F--~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~ 406 (435)
.++.|-|+|. . .+..+|++.| +.|.++. |+.+.++ ..++|++.|.|.+....-.
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~Gf~ 77 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNGLH 77 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHHHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHHHH
Confidence 5778889986 2 3457999988 9998866 4444553 3478999999987665544
No 404
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=67.24 E-value=29 Score=24.14 Aligned_cols=59 Identities=10% Similarity=0.144 Sum_probs=47.6
Q ss_pred CccCCceEEEecCCCCCCHHHHHHHHhccCceeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHh
Q 013840 10 SSEERVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSRQEADKAVNAC 76 (435)
Q Consensus 10 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a~~al~~l 76 (435)
+-...|.|.|-|+|.-+-..++.-.....|--..|.. -.|.|++.|.+.++-+.|+..|
T Consensus 8 sikqnclikiinipqgtlkaevvlavrhlgyefycdy--------idgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 8 SIKQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDY--------IDGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp --CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEE--------CSSCEEEEESSHHHHHHHHHHH
T ss_pred hhhhCcEEEEEecCCCceeeeeEEeehhcCeeEeeee--------ecCeeEEEecCChHHHHHHHHH
Confidence 3467899999999999999999888888886544433 2358999999999999999886
No 405
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=59.22 E-value=42 Score=23.32 Aligned_cols=56 Identities=16% Similarity=0.172 Sum_probs=45.1
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhcCCcEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhc
Q 013840 348 PGANLFIYHIPQEFGDQELGNAFQAFGRVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMM 411 (435)
Q Consensus 348 ~~~~v~V~nLp~~~t~~~L~~~F~~fG~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l 411 (435)
.+|-|.|-|+|..+-..++--.....|---.|..+. |-|+|.|.+.++...|+..|
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHH
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHH
Confidence 568899999999988888777777777666665532 46999999999999999876
No 406
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=56.29 E-value=19 Score=24.24 Aligned_cols=68 Identities=12% Similarity=0.202 Sum_probs=41.7
Q ss_pred eEEEeCC-CCCCCHHHHHHHhhcCCc-----EEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEE
Q 013840 351 NLFIYHI-PQEFGDQELGNAFQAFGR-----VLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQLGGKKLKVQ 424 (435)
Q Consensus 351 ~v~V~nL-p~~~t~~~L~~~F~~fG~-----v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l~gr~i~v~ 424 (435)
+++|..- -..+...+|..++..-+. |=.+.|..+ |.||+-.... |..++..|++..+.|+++.|+
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~~~-~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILNGK-GPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECTTC-HHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECHHH-HHHHHHHhccccCcCceEEEE
Confidence 4555321 245677788888876554 445556322 6888887654 667888899999999999998
Q ss_pred Ecc
Q 013840 425 LKR 427 (435)
Q Consensus 425 ~a~ 427 (435)
.++
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 775
No 407
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=47.39 E-value=31 Score=27.65 Aligned_cols=51 Identities=16% Similarity=0.181 Sum_probs=37.9
Q ss_pred eEEEecCCC-C--------CCHHHHHHHH--hccCceeEEEEEecCCCCCccceEEEEeCCHHHH
Q 013840 16 KLFVGQVPK-H--------MTEAQLLAMF--KEFALVDEVNIIKDKTTRASRGCCFVICPSRQEA 69 (435)
Q Consensus 16 ~l~v~nLp~-~--------~t~~~l~~~f--~~~g~i~~~~~~~~~~~~~~~g~afV~f~~~e~a 69 (435)
++.|-|+|. . ....+|++.| +.|.++. ++...++ ..++|+|.|.|.+.-..
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~G 75 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNG 75 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHH
Confidence 566778876 2 3457899977 9999876 7777776 45889999999876543
No 408
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=22.80 E-value=1.6e+02 Score=20.59 Aligned_cols=34 Identities=15% Similarity=0.211 Sum_probs=26.2
Q ss_pred CeeEEEEecCCCCCcccEEEEEeCCHHHHHHHHHHHcC
Q 013840 128 TIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 165 (435)
Q Consensus 128 ~i~~v~~~~~~~~~~~g~afV~f~~~e~a~~a~~~l~~ 165 (435)
.|..+.++.. ..||.||++...++...+++...|
T Consensus 39 ~i~~v~vP~~----fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 39 DVYSILASES----LKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp CEEEEEECTT----STTEEEEEESSHHHHHHHHTTCTT
T ss_pred cEEEEEEecc----cCCEEEEEEecchhHHHHHHCCCC
Confidence 3667777654 689999999999998888865544
No 409
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=20.16 E-value=1.5e+02 Score=20.62 Aligned_cols=50 Identities=12% Similarity=0.223 Sum_probs=30.7
Q ss_pred cEEEEEEEeeCCCCCcceEEEEEeCCHHHHHHHHHhcCCcee--CCeEEEEEEccCCcC
Q 013840 375 RVLSAKVFVDKATGVSKCFGFVSYESPASAQNAIAMMNGCQL--GGKKLKVQLKRDNKQ 431 (435)
Q Consensus 375 ~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~l--~gr~i~v~~a~~~~~ 431 (435)
+|+.|+|..-...|+-+++|-|.|.+. +. .|+.++ +.+-|.|.+-..+..
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd~------fv-I~~ikVieg~~GlFVaMPs~k~~ 56 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDEA------FV-IHDLRVIEGNSGLFVAMPSKRTP 56 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETTT------EE-EEEEEEEEETTEEEEECCEEECT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECCE------EE-EeeEEEEECCCceEEECCCcCCC
Confidence 577888765555789999999999751 11 233332 124566666554443
Done!