Query 013841
Match_columns 435
No_of_seqs 280 out of 1503
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 07:55:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013841.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013841hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1437 Fasciclin and related 99.9 9.2E-27 2E-31 248.1 14.1 312 14-369 328-648 (682)
2 COG2335 Secreted and surface p 99.9 3E-23 6.5E-28 189.1 10.4 132 223-366 48-185 (187)
3 PF02469 Fasciclin: Fasciclin 99.8 2.8E-19 6.1E-24 155.0 9.1 121 234-362 3-128 (128)
4 COG2335 Secreted and surface p 99.7 3.1E-18 6.6E-23 156.4 9.0 130 59-212 46-183 (187)
5 smart00554 FAS1 Four repeated 99.7 4.7E-18 1E-22 141.3 6.9 95 259-363 1-99 (99)
6 PF02469 Fasciclin: Fasciclin 99.6 2.7E-15 5.9E-20 130.0 8.9 121 71-210 1-128 (128)
7 KOG1437 Fasciclin and related 99.6 1.2E-15 2.7E-20 163.3 7.5 149 196-362 356-507 (682)
8 smart00554 FAS1 Four repeated 99.2 1.7E-11 3.7E-16 101.7 6.8 93 96-211 1-99 (99)
9 PF04625 DEC-1_N: DEC-1 protei 56.3 14 0.00031 37.1 4.1 15 364-378 101-115 (407)
10 PF01690 PLRV_ORF5: Potato lea 20.5 83 0.0018 33.5 2.8 7 377-383 21-27 (465)
No 1
>KOG1437 consensus Fasciclin and related adhesion glycoproteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=99.94 E-value=9.2e-27 Score=248.07 Aligned_cols=312 Identities=17% Similarity=0.145 Sum_probs=219.9
Q ss_pred CCCccEEEeecCCceE--EEEeecCceeeehhhHHHHHHHHhhcCCCCcccHHHHHccCCCcHHHHHHHHHhchhhHhcC
Q 013841 14 LHSTPLLVHKSTDTVT--AAAMENRPLLTTNLLLFPLLVLLLSSTTSHAHNITRILAKHPEFSTFNHYLTVTHLAAEINR 91 (435)
Q Consensus 14 ~~~~~l~v~~~~~~~t--~~~~~~~~~~~~n~v~~~~~~ll~~~~~~~a~ni~~~L~~~~~~Stf~~lL~~tgL~~~L~~ 91 (435)
.+|...++||+|++.+ |..+.+||++.+||+||+|+..|.+++ .++++++..++ +-|++.+++.+-|+.+.|..
T Consensus 328 ~~~~~~a~g~~g~~~~~ng~~~I~kd~i~~~~~lh~id~~l~p~~---~~~l~~La~e~-~~st~~rlv~elgll~~L~~ 403 (682)
T KOG1437|consen 328 GEGVAIAPGSSGERYHINGRAIIQKDFIHTNGLLHYIDYVLEPDS---LKNLMSLARED-EISTSMRLVAELGLLTALAP 403 (682)
T ss_pred cccccccccCCCceEEeecceeEEEeeeccceEEEEcccccCCch---HHHHHHHHhcc-cccHHHHHHHhccceEEEcC
Confidence 5778899999999977 444444999999999999999888544 78998866554 66999999999999998888
Q ss_pred CCceEEEEeCcHHHHhhhhcCCCHHHHHHHHhhcccccccCccccccccCCceeecccccccCCCCCCCCeEEEEEcCCC
Q 013841 92 RQTITVLALDNSAMSSLLSKQLSVYTLRNVLSLHVLTDYFGSKKLHQITNGTALTSSMFQATGSAPGSSGYVNVTDLKGG 171 (435)
Q Consensus 92 ~~~~TVfAPtN~AF~~l~~~~~~~~~L~~lL~yHVl~~~~~s~~L~~l~~g~~l~~Tl~q~tg~a~~~~g~vnit~~~~g 171 (435)
.+.+|+|+|+|.+|+++... +.+..+++||.||+++.+..++++ +++++.+.|+. ++.-.+.+.+ ..+
T Consensus 404 n~e~t~~lp~n~~fd~~~~~-~~r~l~~qIL~~HII~~~~~~~~~---y~~~~~v~t~g-------~~~l~~fv~r-~~~ 471 (682)
T KOG1437|consen 404 NDEATLLLPTNNLFDDLTPL-ESRRLAEQILYNHIIPEYLTSSSM---YNGQTTVRTLG-------KNKLLYFVYR-HSV 471 (682)
T ss_pred CCceEEeeehhhhccCCChh-hhHHHHHHHHHHhCcchhhhhhhh---hcccceeeccC-------CeEEEEEEec-ccc
Confidence 77799999999999997553 234568999999999999999887 66665556553 1111111221 111
Q ss_pred eEEEccccCCCccceeEeeecccccccceeeeeecccccCcCCCCCCCCCCCCHHHHHHhcC-hHHHHHHHHHcCchhhh
Q 013841 172 KVGFGAEDNDGKLDATYVKSVAEFPYNISVLQISQVLNSDEAEAPTPGPSGLNLTAIMAKQG-CKAFADLLIATGAHTTF 250 (435)
Q Consensus 172 ~V~~~~~~~g~~~~atvv~~v~~~~~ng~V~~Id~vL~p~~~~ap~~~p~~~~i~~~L~~~g-~stf~~lL~~agL~~~L 250 (435)
+.....-..|+ . +++...... ..||+||.||+|+.| .++.+.|+..+ ++.+.++++..++.++|
T Consensus 472 s~~~t~i~~~~-~-~~Ii~aDi~-~~nGvvH~id~vl~p------------~~l~~~l~~d~r~s~~~~~le~~~l~e~l 536 (682)
T KOG1437|consen 472 SANVTDILIGN-E-ACIIEADIS-VKNGVVHIIDRVLDP------------VSLMEDLKTDGRISGTVQGLEGVLLPEEL 536 (682)
T ss_pred cccceeeeccc-e-eeEEecccc-eecCceEEeeEEcCc------------ccHHHHHhhccchhhhHHhhhhcCChhhh
Confidence 11110000122 3 455443222 348999999999987 27899999999 99999999999999999
Q ss_pred cccCCCCeEEEecCcHHHHhhhhhhhcc-cHHHHHhhccccccccccchhhhcccCccccccccCCCcceEEEEEEcCCe
Q 013841 251 EENLDGGLTVFCPTDAVVNDFMPKYKNL-TEAHKVSLLLYHGTPVYQSLQTLKSSNGVMNTLATDGASKYDFTVQNDGEI 329 (435)
Q Consensus 251 ~~~~~~~~TVFAPTD~AF~~l~~~l~~l-~~~~L~~lL~YHvvp~~~~~~~l~~~~~~~~Tlag~~~~~~~l~v~~~g~~ 329 (435)
+.. +.||+|+|||+||.+......++ ....|..+++||++++... +.-...+..++ .+.++..++.
T Consensus 537 ~~~--~~~t~fvPt~ka~~~~~~~~~~~~~~~~l~~~l~yH~v~~~~~---ls~~~~~~v~~--------~~k~s~~~~~ 603 (682)
T KOG1437|consen 537 TPE--GNYTLFVPTNKAWQKSTKDEKSLFHKKALQDFLKYHLVPGQSR---LSLGSSPYVMI--------QVKLSLRGDH 603 (682)
T ss_pred ccC--CceEEEeecccccccCCcchhhcchHHHHHHHHHhccccceee---eecccccceee--------eeeEEEeccc
Confidence 776 89999999999999885433223 3468999999999997553 21111111111 0222233443
Q ss_pred EEEee----C-cccceEEeeeccCCCeEEEEeCCccCCCCCCCCC
Q 013841 330 VTLKT----K-ATTAKITGTLKDEEPLVIYKINKVLLPIELFKPE 369 (435)
Q Consensus 330 v~v~~----g-v~~a~V~~~~~~~~ngvIh~ID~VL~P~~l~~~~ 369 (435)
+.+.. + ++..+++...+...||++|+||.||.|+.++...
T Consensus 604 ~~~~~~~~~~~vn~e~~~~~~i~~~n~~~h~i~~vl~p~~l~~~n 648 (682)
T KOG1437|consen 604 LFFSLVNPRGDVNKERLVGIDIMGTNGVVHVIDLVLKPPDLPFLN 648 (682)
T ss_pred EEeeeeccccceeeeeeeccceeeecceeEEEEEEcccCcchhhc
Confidence 33322 1 3444555666667799999999999999777665
No 2
>COG2335 Secreted and surface protein containing fasciclin-like repeats [Cell envelope biogenesis, outer membrane]
Probab=99.89 E-value=3e-23 Score=189.06 Aligned_cols=132 Identities=25% Similarity=0.306 Sum_probs=110.9
Q ss_pred CCHHHHHHhcC-hHHHHHHHHHcCchhhhcccCCCCeEEEecCcHHHHhhhh-hhhcc----cHHHHHhhcccccccccc
Q 013841 223 LNLTAIMAKQG-CKAFADLLIATGAHTTFEENLDGGLTVFCPTDAVVNDFMP-KYKNL----TEAHKVSLLLYHGTPVYQ 296 (435)
Q Consensus 223 ~~i~~~L~~~g-~stf~~lL~~agL~~~L~~~~~~~~TVFAPTD~AF~~l~~-~l~~l----~~~~L~~lL~YHvvp~~~ 296 (435)
.+|.+....++ |++|..+++.++|.++|++. |+||||||||+||.+++. ++..| ++.+|+.+|.|||++|.+
T Consensus 48 ~~iV~~a~~~~~f~tl~~a~~aa~Lv~~L~~~--gp~TVFaPtn~AFa~lp~~T~~~Ll~pen~~~L~~iLtYHVv~Gk~ 125 (187)
T COG2335 48 ADIVESAANNPSFTTLVAALKAAGLVDTLNET--GPFTVFAPTNEAFAKLPAGTLDALLKPENKPLLTKILTYHVVEGKI 125 (187)
T ss_pred hHHHHHHccCcchHHHHHHHHhhhhHHHhcCC--CCeEEecCCHHHHHhCChhHHHHHhCccchhhhheeeEEEEEcCcc
Confidence 46666666666 99999999999999999998 999999999999999964 55555 457899999999999999
Q ss_pred chhhhcccCccccccccCCCcceEEEEEEcCCeEEEeeCcccceEEeeeccCCCeEEEEeCCccCCCCCC
Q 013841 297 SLQTLKSSNGVMNTLATDGASKYDFTVQNDGEIVTLKTKATTAKITGTLKDEEPLVIYKINKVLLPIELF 366 (435)
Q Consensus 297 ~~~~l~~~~~~~~Tlag~~~~~~~l~v~~~g~~v~v~~gv~~a~V~~~~~~~~ngvIh~ID~VL~P~~l~ 366 (435)
...+++. .+.++|+.|. .+++...++.+.|+ .++|+..++..+|||||+||+||+|+..-
T Consensus 126 ~~~~l~~-~~~v~t~~G~-----~~~i~~~~~~~~Vn----~a~v~~~di~a~NgvIhvID~Vl~Pp~~~ 185 (187)
T COG2335 126 TAADLKS-SGSVKTVQGA-----DLKIKVTGGGVYVN----DATVTIADINASNGVIHVIDKVLIPPMDL 185 (187)
T ss_pred cHHHhhc-cccceeecCc-----eEEEEEcCCcEEEe----eeEEEeccEeccCcEEEEEeeeccCCCcc
Confidence 9999874 4568888774 56666666668886 67888888888999999999999998753
No 3
>PF02469 Fasciclin: Fasciclin domain; InterPro: IPR000782 The FAS1 (fasciclin-like) domain is an extracellular module of about 140 amino acid residues. It has been suggested that the FAS1 domain represents an ancient cell adhesion domain common to plants and animals []; related FAS1 domains are also found in bacteria []. The crystal structure of FAS1 domains 3 and 4 of fasciclin I from Drosophila melanogaster (Fruit fly) has been determined, revealing a novel domain fold consisting of a seven-stranded beta wedge and at least five alpha helices; two well-ordered N-acetylglucosamine groups attached to a conserved asparagine are located in the interface region between the two FAS1 domains []. Fasciclin I is an insect neural cell adhesion molecule involved in axonal guidance that is attached to the membrane by a GPI-anchored protein. FAS1 domains are present in many secreted and membrane-anchored proteins. These proteins are usually GPI anchored and consist of: (i) a single FAS1 domain, (ii) a tandem array of FAS1 domains, or (iii) FAS1 domain(s) interspersed with other domains. Proteins known to contain a FAS1 domain include: Fasciclin I (4 FAS1 domains). Human TGF-beta induced Ig-H3 (BIgH3) protein (4 FAS1 domains), where the FAS1 domains mediate cell adhesion through an interaction with alpha3/beta1 integrin; mutation in the FAS1 domains result in corneal dystrophy []. Volvox major cell adhesion protein (2 FAS1 domains) []. Arabidopsis fasciclin-like arabinogalactan proteins (2 FAS1 domains) []. Mammalian stabilin protein, a family of fasciclin-like hyaluronan receptor homologues (7 FAS1 domains)[]. Human extracellular matrix protein periostin (4 FAS1 domains). Bacterial immunogenic protein MPT70 (1 FAS1 domain) []. The FAS1 domains of both human periostin (Q15063 from SWISSPROT) and BIgH3 (Q15582 from SWISSPROT) proteins were found to contain vitamin K-dependent gamma-carboxyglutamate residues []. Gamma-carboxyglutamate residues are more commonly associated with GLA domains (IPR000294 from INTERPRO), where they occur through post-translational modification catalysed by the vitamin K-dependent enzyme gamma-glutamylcarboxylase.; PDB: 1O70_A 1W7D_A 1W7E_A 1NYO_A 1X3B_A 2VXP_A.
Probab=99.79 E-value=2.8e-19 Score=155.03 Aligned_cols=121 Identities=24% Similarity=0.355 Sum_probs=91.1
Q ss_pred hHHHHHHHHHcCchhhh-cccCCCCeEEEecCcHHHHhhhh-hhhcc--cHHHHHhhccccccccccchhhhcccCcccc
Q 013841 234 CKAFADLLIATGAHTTF-EENLDGGLTVFCPTDAVVNDFMP-KYKNL--TEAHKVSLLLYHGTPVYQSLQTLKSSNGVMN 309 (435)
Q Consensus 234 ~stf~~lL~~agL~~~L-~~~~~~~~TVFAPTD~AF~~l~~-~l~~l--~~~~L~~lL~YHvvp~~~~~~~l~~~~~~~~ 309 (435)
|++|.++|+++|+.+.| ++. +.+|||||+|+||+++.. ..+.+ ..+.++++|+||++++.++.++++.....++
T Consensus 3 ~s~f~~~l~~~~l~~~l~~~~--~~~TvfaP~d~a~~~~~~~~~~~~~~~~~~l~~~l~~hiv~~~~~~~~l~~~~~~~~ 80 (128)
T PF02469_consen 3 LSTFSRLLEQAGLADLLNDSD--GNYTVFAPTDDAFQKLSQETNSSLADSKEQLKSLLKYHIVPGSITSSDLRNGKQTLE 80 (128)
T ss_dssp THHHHHHHHHTTCHHHHGCSS--SSEEEEEE-HHHHHHSHHHHHHHHHTHHHHHHHHHHHTEEES---HCHHHCHHEEEE
T ss_pred HHHHHHHHHHcCCHHHHhcCC--CCEEEEEECHHHHHhccccccchhhhhhhhHhhhhhhEEEcCceehhhhccccccce
Confidence 89999999999999999 554 899999999999999842 33333 6688999999999999999999875423577
Q ss_pred c-cccCCCcceEEEEEEcCCeEEEeeCcccceEEeeeccCCCeEEEEeCCccCC
Q 013841 310 T-LATDGASKYDFTVQNDGEIVTLKTKATTAKITGTLKDEEPLVIYKINKVLLP 362 (435)
Q Consensus 310 T-lag~~~~~~~l~v~~~g~~v~v~~gv~~a~V~~~~~~~~ngvIh~ID~VL~P 362 (435)
| +.|. .+.++...+++.+.|+. .++|+..++...||+||+||+||+|
T Consensus 81 t~~~g~---~~~v~~~~~~~~~~v~~---~a~i~~~~~~~~nG~ih~id~vL~P 128 (128)
T PF02469_consen 81 TLLNGQ---PLRVSSSPSNGTIYVNG---KARIVKSDIEASNGVIHIIDDVLIP 128 (128)
T ss_dssp BSSTTC---EEEEEEEGGTTEEEECC---EEEESEEEEEESSEEEEEESS-TSS
T ss_pred eccCCC---EEEEEEEecCCceEecC---ceEEEeCCEEeCCEEEEEECceECc
Confidence 7 4442 34444432377888864 5888877788889999999999998
No 4
>COG2335 Secreted and surface protein containing fasciclin-like repeats [Cell envelope biogenesis, outer membrane]
Probab=99.75 E-value=3.1e-18 Score=156.35 Aligned_cols=130 Identities=22% Similarity=0.266 Sum_probs=99.7
Q ss_pred CcccHHHHHccCCCcHHHHHHHHHhchhhHhcCCCceEEEEeCcHHHHhhhhcC-----C--CHHHHHHHHhhccccccc
Q 013841 59 HAHNITRILAKHPEFSTFNHYLTVTHLAAEINRRQTITVLALDNSAMSSLLSKQ-----L--SVYTLRNVLSLHVLTDYF 131 (435)
Q Consensus 59 ~a~ni~~~L~~~~~~Stf~~lL~~tgL~~~L~~~~~~TVfAPtN~AF~~l~~~~-----~--~~~~L~~lL~yHVl~~~~ 131 (435)
..++|.+...++++|++|..+++.++|.+.|++.|+||||||+|+||++++... . +++.|+.+|.|||+.|++
T Consensus 46 ~~~~iV~~a~~~~~f~tl~~a~~aa~Lv~~L~~~gp~TVFaPtn~AFa~lp~~T~~~Ll~pen~~~L~~iLtYHVv~Gk~ 125 (187)
T COG2335 46 NRADIVESAANNPSFTTLVAALKAAGLVDTLNETGPFTVFAPTNEAFAKLPAGTLDALLKPENKPLLTKILTYHVVEGKI 125 (187)
T ss_pred chhHHHHHHccCcchHHHHHHHHhhhhHHHhcCCCCeEEecCCHHHHHhCChhHHHHHhCccchhhhheeeEEEEEcCcc
Confidence 357888888899999999999999999999999999999999999999998753 2 688999999999999999
Q ss_pred CccccccccCCceeecccccccCCCCCCCCeEEEEEcCCCeEEEccccCCCccceeEee-ecccccccceeeeeeccccc
Q 013841 132 GSKKLHQITNGTALTSSMFQATGSAPGSSGYVNVTDLKGGKVGFGAEDNDGKLDATYVK-SVAEFPYNISVLQISQVLNS 210 (435)
Q Consensus 132 ~s~~L~~l~~g~~l~~Tl~q~tg~a~~~~g~vnit~~~~g~V~~~~~~~g~~~~atvv~-~v~~~~~ng~V~~Id~vL~p 210 (435)
..+++..... +.|+- | ..++|... ++++.++. ++++. ++. ..||+||.||+||+|
T Consensus 126 ~~~~l~~~~~----v~t~~-------G--~~~~i~~~-~~~~~Vn~--------a~v~~~di~--a~NgvIhvID~Vl~P 181 (187)
T COG2335 126 TAADLKSSGS----VKTVQ-------G--ADLKIKVT-GGGVYVND--------ATVTIADIN--ASNGVIHVIDKVLIP 181 (187)
T ss_pred cHHHhhcccc----ceeec-------C--ceEEEEEc-CCcEEEee--------eEEEeccEe--ccCcEEEEEeeeccC
Confidence 9999854221 23321 1 22455442 33477652 22222 222 369999999999999
Q ss_pred Cc
Q 013841 211 DE 212 (435)
Q Consensus 211 ~~ 212 (435)
|.
T Consensus 182 p~ 183 (187)
T COG2335 182 PM 183 (187)
T ss_pred CC
Confidence 86
No 5
>smart00554 FAS1 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.
Probab=99.73 E-value=4.7e-18 Score=141.34 Aligned_cols=95 Identities=34% Similarity=0.443 Sum_probs=77.3
Q ss_pred EEEecCcHHHHhhhh-hhhcccHH-HHHhhccccccccccchhhhcccCccccccccCCCcceEEEEEEcC--CeEEEee
Q 013841 259 TVFCPTDAVVNDFMP-KYKNLTEA-HKVSLLLYHGTPVYQSLQTLKSSNGVMNTLATDGASKYDFTVQNDG--EIVTLKT 334 (435)
Q Consensus 259 TVFAPTD~AF~~l~~-~l~~l~~~-~L~~lL~YHvvp~~~~~~~l~~~~~~~~Tlag~~~~~~~l~v~~~g--~~v~v~~ 334 (435)
|||||+|+||+++.+ .++.+..+ .++++|+||+++++++.++|.. ...++|+.|. .+.++..+ +.+.++
T Consensus 1 TvfaP~d~Af~~~~~~~~~~l~~~~~l~~ll~~Hiv~~~~~~~~l~~-~~~~~Tl~g~-----~l~v~~~~~~~~i~in- 73 (99)
T smart00554 1 TVFAPTDEAFQKLPPGTLNSLLADPKLKNLLLYHVVPGRLSSADLLN-GGTLPTLAGS-----KLRVTRSGDSGTVTVN- 73 (99)
T ss_pred CEeCcCHHHHHhcCHHHHHHHhCCHHHHHHHHhcEeCceEcHHHhcc-CCccccCCCC-----EEEEEEeCCCCeEEEc-
Confidence 899999999999954 45555434 8999999999999999999975 3568888753 56666665 677775
Q ss_pred CcccceEEeeeccCCCeEEEEeCCccCCC
Q 013841 335 KATTAKITGTLKDEEPLVIYKINKVLLPI 363 (435)
Q Consensus 335 gv~~a~V~~~~~~~~ngvIh~ID~VL~P~ 363 (435)
+++|+..++..+||+||+||+||+|+
T Consensus 74 ---~~~v~~~di~~~nGvih~Id~vL~P~ 99 (99)
T smart00554 74 ---GARIVEADIAATNGVVHVIDRVLLPP 99 (99)
T ss_pred ---ceEEEECCEecCCeEEEEECceeCCC
Confidence 47888888888899999999999996
No 6
>PF02469 Fasciclin: Fasciclin domain; InterPro: IPR000782 The FAS1 (fasciclin-like) domain is an extracellular module of about 140 amino acid residues. It has been suggested that the FAS1 domain represents an ancient cell adhesion domain common to plants and animals []; related FAS1 domains are also found in bacteria []. The crystal structure of FAS1 domains 3 and 4 of fasciclin I from Drosophila melanogaster (Fruit fly) has been determined, revealing a novel domain fold consisting of a seven-stranded beta wedge and at least five alpha helices; two well-ordered N-acetylglucosamine groups attached to a conserved asparagine are located in the interface region between the two FAS1 domains []. Fasciclin I is an insect neural cell adhesion molecule involved in axonal guidance that is attached to the membrane by a GPI-anchored protein. FAS1 domains are present in many secreted and membrane-anchored proteins. These proteins are usually GPI anchored and consist of: (i) a single FAS1 domain, (ii) a tandem array of FAS1 domains, or (iii) FAS1 domain(s) interspersed with other domains. Proteins known to contain a FAS1 domain include: Fasciclin I (4 FAS1 domains). Human TGF-beta induced Ig-H3 (BIgH3) protein (4 FAS1 domains), where the FAS1 domains mediate cell adhesion through an interaction with alpha3/beta1 integrin; mutation in the FAS1 domains result in corneal dystrophy []. Volvox major cell adhesion protein (2 FAS1 domains) []. Arabidopsis fasciclin-like arabinogalactan proteins (2 FAS1 domains) []. Mammalian stabilin protein, a family of fasciclin-like hyaluronan receptor homologues (7 FAS1 domains)[]. Human extracellular matrix protein periostin (4 FAS1 domains). Bacterial immunogenic protein MPT70 (1 FAS1 domain) []. The FAS1 domains of both human periostin (Q15063 from SWISSPROT) and BIgH3 (Q15582 from SWISSPROT) proteins were found to contain vitamin K-dependent gamma-carboxyglutamate residues []. Gamma-carboxyglutamate residues are more commonly associated with GLA domains (IPR000294 from INTERPRO), where they occur through post-translational modification catalysed by the vitamin K-dependent enzyme gamma-glutamylcarboxylase.; PDB: 1O70_A 1W7D_A 1W7E_A 1NYO_A 1X3B_A 2VXP_A.
Probab=99.60 E-value=2.7e-15 Score=129.95 Aligned_cols=121 Identities=26% Similarity=0.320 Sum_probs=83.3
Q ss_pred CCcHHHHHHHHHhchhhHh-cCCCceEEEEeCcHHHHhhhhcC-----CCHHHHHHHHhhcccccccCccccccccCCce
Q 013841 71 PEFSTFNHYLTVTHLAAEI-NRRQTITVLALDNSAMSSLLSKQ-----LSVYTLRNVLSLHVLTDYFGSKKLHQITNGTA 144 (435)
Q Consensus 71 ~~~Stf~~lL~~tgL~~~L-~~~~~~TVfAPtN~AF~~l~~~~-----~~~~~L~~lL~yHVl~~~~~s~~L~~l~~g~~ 144 (435)
|+||+|.++|+++||.+.| +..+.+|||||+|+||+++.... .+.+.++.+|+|||+++.+..++|. ++.+
T Consensus 1 ~~~s~f~~~l~~~~l~~~l~~~~~~~TvfaP~d~a~~~~~~~~~~~~~~~~~~l~~~l~~hiv~~~~~~~~l~---~~~~ 77 (128)
T PF02469_consen 1 PDLSTFSRLLEQAGLADLLNDSDGNYTVFAPTDDAFQKLSQETNSSLADSKEQLKSLLKYHIVPGSITSSDLR---NGKQ 77 (128)
T ss_dssp -TTHHHHHHHHHTTCHHHHGCSSSSEEEEEE-HHHHHHSHHHHHHHHHTHHHHHHHHHHHTEEES---HCHHH---CHHE
T ss_pred CCHHHHHHHHHHcCCHHHHhcCCCCEEEEEECHHHHHhccccccchhhhhhhhHhhhhhhEEEcCceehhhhc---cccc
Confidence 7899999999999999999 67799999999999999874321 1567899999999999999988884 3312
Q ss_pred eecccccccCCCCCCCCeEEEEEc-CCCeEEEccccCCCccceeEeeecccccccceeeeeeccccc
Q 013841 145 LTSSMFQATGSAPGSSGYVNVTDL-KGGKVGFGAEDNDGKLDATYVKSVAEFPYNISVLQISQVLNS 210 (435)
Q Consensus 145 l~~Tl~q~tg~a~~~~g~vnit~~-~~g~V~~~~~~~g~~~~atvv~~v~~~~~ng~V~~Id~vL~p 210 (435)
.+.|+.+ + ..+.++.. .++.+.+.. .+.+++... ...||.||.||+||.|
T Consensus 78 ~~~t~~~------g--~~~~v~~~~~~~~~~v~~-------~a~i~~~~~-~~~nG~ih~id~vL~P 128 (128)
T PF02469_consen 78 TLETLLN------G--QPLRVSSSPSNGTIYVNG-------KARIVKSDI-EASNGVIHIIDDVLIP 128 (128)
T ss_dssp EEEBSST------T--CEEEEEEEGGTTEEEECC-------EEEESEEEE-EESSEEEEEESS-TSS
T ss_pred cceeccC------C--CEEEEEEEecCCceEecC-------ceEEEeCCE-EeCCEEEEEECceECc
Confidence 2344211 1 24556554 467788753 244443222 3468999999999987
No 7
>KOG1437 consensus Fasciclin and related adhesion glycoproteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=99.59 E-value=1.2e-15 Score=163.35 Aligned_cols=149 Identities=21% Similarity=0.213 Sum_probs=112.7
Q ss_pred cccceeeeeecccccCcCCCCCCCCCCCCHHHHHHhcChHHHHHHHHHcCchhhhcccCCCCeEEEecCcHHHHhhhhhh
Q 013841 196 PYNISVLQISQVLNSDEAEAPTPGPSGLNLTAIMAKQGCKAFADLLIATGAHTTFEENLDGGLTVFCPTDAVVNDFMPKY 275 (435)
Q Consensus 196 ~~ng~V~~Id~vL~p~~~~ap~~~p~~~~i~~~L~~~g~stf~~lL~~agL~~~L~~~~~~~~TVFAPTD~AF~~l~~~l 275 (435)
..|++||.||.+|.|+. ..+++++..++.++++.+++.+-|+.+.|... +.+|+|+|+|++|+.+.+.+
T Consensus 356 ~~~~~lh~id~~l~p~~---------~~~l~~La~e~~~st~~rlv~elgll~~L~~n--~e~t~~lp~n~~fd~~~~~~ 424 (682)
T KOG1437|consen 356 HTNGLLHYIDYVLEPDS---------LKNLMSLAREDEISTSMRLVAELGLLTALAPN--DEATLLLPTNNLFDDLTPLE 424 (682)
T ss_pred ccceEEEEcccccCCch---------HHHHHHHHhcccccHHHHHHHhccceEEEcCC--CceEEeeehhhhccCCChhh
Confidence 34589999999999863 36899998888899999999999999988776 66999999999999985522
Q ss_pred hcccHHHHHhhccccccccccchhhhcccCccccccccCCCcceEEEEEEcCCeEE---EeeCcccceEEeeeccCCCeE
Q 013841 276 KNLTEAHKVSLLLYHGTPVYQSLQTLKSSNGVMNTLATDGASKYDFTVQNDGEIVT---LKTKATTAKITGTLKDEEPLV 352 (435)
Q Consensus 276 ~~l~~~~L~~lL~YHvvp~~~~~~~l~~~~~~~~Tlag~~~~~~~l~v~~~g~~v~---v~~gv~~a~V~~~~~~~~ngv 352 (435)
.+..+++||+||+++.++...+..+....++|+-+ .++..-+.+..+... +..+. .+.|+..++...||+
T Consensus 425 ---~r~l~~qIL~~HII~~~~~~~~~y~~~~~v~t~g~---~~l~~fv~r~~~s~~~t~i~~~~-~~~Ii~aDi~~~nGv 497 (682)
T KOG1437|consen 425 ---SRRLAEQILYNHIIPEYLTSSSMYNGQTTVRTLGK---NKLLYFVYRHSVSANVTDILIGN-EACIIEADISVKNGV 497 (682)
T ss_pred ---hHHHHHHHHHHhCcchhhhhhhhhcccceeeccCC---eEEEEEEecccccccceeeeccc-eeeEEecccceecCc
Confidence 12237899999999999998887755446677643 234444444322211 21122 378888888889999
Q ss_pred EEEeCCccCC
Q 013841 353 IYKINKVLLP 362 (435)
Q Consensus 353 Ih~ID~VL~P 362 (435)
||.||+||-|
T Consensus 498 vH~id~vl~p 507 (682)
T KOG1437|consen 498 VHIIDRVLDP 507 (682)
T ss_pred eEEeeEEcCc
Confidence 9999999999
No 8
>smart00554 FAS1 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.
Probab=99.23 E-value=1.7e-11 Score=101.74 Aligned_cols=93 Identities=28% Similarity=0.306 Sum_probs=63.9
Q ss_pred EEEEeCcHHHHhhhhcC---C--CHHHHHHHHhhcccccccCccccccccCCceeecccccccCCCCCCCCeEEEEEcCC
Q 013841 96 TVLALDNSAMSSLLSKQ---L--SVYTLRNVLSLHVLTDYFGSKKLHQITNGTALTSSMFQATGSAPGSSGYVNVTDLKG 170 (435)
Q Consensus 96 TVfAPtN~AF~~l~~~~---~--~~~~L~~lL~yHVl~~~~~s~~L~~l~~g~~l~~Tl~q~tg~a~~~~g~vnit~~~~ 170 (435)
|||||+|+||+++.... + +. .++++|+|||+++++..++|.. + ..++|+. | ..+.++...+
T Consensus 1 TvfaP~d~Af~~~~~~~~~~l~~~~-~l~~ll~~Hiv~~~~~~~~l~~---~-~~~~Tl~---g------~~l~v~~~~~ 66 (99)
T smart00554 1 TVFAPTDEAFQKLPPGTLNSLLADP-KLKNLLLYHVVPGRLSSADLLN---G-GTLPTLA---G------SKLRVTRSGD 66 (99)
T ss_pred CEeCcCHHHHHhcCHHHHHHHhCCH-HHHHHHHhcEeCceEcHHHhcc---C-CccccCC---C------CEEEEEEeCC
Confidence 89999999999986531 1 22 8999999999999999988843 3 2245542 1 2356665443
Q ss_pred -CeEEEccccCCCccceeEeeecccccccceeeeeecccccC
Q 013841 171 -GKVGFGAEDNDGKLDATYVKSVAEFPYNISVLQISQVLNSD 211 (435)
Q Consensus 171 -g~V~~~~~~~g~~~~atvv~~v~~~~~ng~V~~Id~vL~p~ 211 (435)
+.+.++. +.+++. +....||+||.||+||.|+
T Consensus 67 ~~~i~in~--------~~v~~~-di~~~nGvih~Id~vL~P~ 99 (99)
T smart00554 67 SGTVTVNG--------ARIVEA-DIAATNGVVHVIDRVLLPP 99 (99)
T ss_pred CCeEEEcc--------eEEEEC-CEecCCeEEEEECceeCCC
Confidence 5666642 234443 2234689999999999985
No 9
>PF04625 DEC-1_N: DEC-1 protein, N-terminal region; InterPro: IPR006719 The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing []. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). This domain is present at the N-terminal of these proteins.; GO: 0005213 structural constituent of chorion, 0007304 chorion-containing eggshell formation, 0005576 extracellular region, 0042600 chorion
Probab=56.31 E-value=14 Score=37.09 Aligned_cols=15 Identities=33% Similarity=0.521 Sum_probs=6.4
Q ss_pred CCCCCCCCCCCCCCC
Q 013841 364 ELFKPEVETEAPAPA 378 (435)
Q Consensus 364 ~l~~~~~~~~ap~p~ 378 (435)
++.+.++|.|+|+|+
T Consensus 101 g~LGQaaPvPa~aPa 115 (407)
T PF04625_consen 101 GFLGQAAPVPAPAPA 115 (407)
T ss_pred cccccCCCCCCCCCC
Confidence 334444444444443
No 10
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=20.46 E-value=83 Score=33.53 Aligned_cols=7 Identities=43% Similarity=1.065 Sum_probs=2.7
Q ss_pred CCCCCCC
Q 013841 377 PAPTPHK 383 (435)
Q Consensus 377 p~~~~~~ 383 (435)
|+|+|.+
T Consensus 21 P~PePtP 27 (465)
T PF01690_consen 21 PTPEPTP 27 (465)
T ss_pred ccCCCcc
Confidence 3333333
Done!