Query 013841
Match_columns 435
No_of_seqs 280 out of 1503
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 18:06:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013841.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013841hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1o70_A Fasciclin I, FAS I, FCN 100.0 8.7E-44 3E-48 355.8 18.4 284 59-368 4-315 (324)
2 1w7d_A Fasciclin-like protein; 99.9 2.9E-26 9.9E-31 201.7 5.0 129 223-364 3-137 (137)
3 2vxp_A Transforming growth fac 99.9 5.2E-25 1.8E-29 192.5 12.2 127 223-361 2-132 (132)
4 1nyo_A Immunogenic protein MPT 99.9 4.9E-25 1.7E-29 199.6 7.8 128 222-364 27-163 (163)
5 1o70_A Fasciclin I, FAS I, FCN 99.8 7.8E-21 2.7E-25 189.5 11.0 137 223-364 6-158 (324)
6 1w7d_A Fasciclin-like protein; 99.8 1.3E-20 4.5E-25 165.5 7.6 128 60-211 2-136 (137)
7 2vxp_A Transforming growth fac 99.8 1.9E-19 6.5E-24 157.1 13.1 126 61-209 2-132 (132)
8 1nyo_A Immunogenic protein MPT 99.8 3.7E-19 1.3E-23 160.9 9.3 127 59-211 26-162 (163)
9 2k0l_A Outer membrane protein 20.8 49 0.0017 29.3 2.5 11 372-382 198-208 (216)
10 3ygs_P Procaspase 9; apoptosis 4.8 3.8E+02 0.013 20.7 2.4 27 225-251 59-91 (97)
No 1
>1o70_A Fasciclin I, FAS I, FCN; cell adhesion, AXON guidance, extracellular module, genetic disorder, corneal dystrophy; HET: NAG; 2.6A {Drosophila melanogaster} SCOP: b.118.1.1 b.118.1.1
Probab=100.00 E-value=8.7e-44 Score=355.80 Aligned_cols=284 Identities=17% Similarity=0.151 Sum_probs=209.5
Q ss_pred CcccHHHHHc------cCCCcHHHHHHHHHhc--hhhHhcCCCceEEEEeCcHHHHhhhhcC--CCHHHHHHHHhhcccc
Q 013841 59 HAHNITRILA------KHPEFSTFNHYLTVTH--LAAEINRRQTITVLALDNSAMSSLLSKQ--LSVYTLRNVLSLHVLT 128 (435)
Q Consensus 59 ~a~ni~~~L~------~~~~~Stf~~lL~~tg--L~~~L~~~~~~TVfAPtN~AF~~l~~~~--~~~~~L~~lL~yHVl~ 128 (435)
...||+++|. ++++||+|.++|+++| |.+.|++.++||||||+|+||+++.... .+.+.|+++|+|||++
T Consensus 4 ~~~~i~~~L~~~~~~~~~~~~s~~~~~l~~ag~~l~~~L~~~~~~TvFAPtn~Af~~~~~~~l~~~~~~l~~iL~yHvv~ 83 (324)
T 1o70_A 4 ADTTVTQFLQSFKENAENGALRKFYEVIMDNGGAVLDDINSLTEVTILAPSNEAWNSSNINNVLRDRNKMRQILNMHIIK 83 (324)
T ss_dssp ---------------CCHHHHHHHHHHHHHTCSHHHHHHHTCSSEEEEEECHHHHHHTCTHHHHTCHHHHHHHHHHTEES
T ss_pred ehhhHHHHHHHHHhhhcCCcHHHHHHHHHHHhHHHHHHHcCCCCeEEEEEChHhhhcccHhhhhCCHHHHHHHHHhcEeC
Confidence 3678889887 6889999999999999 9999999999999999999998763322 3688999999999999
Q ss_pred cccCccccccccCC-ceeecccccccCCCCCCCCeEEEEEc-CCCeEEEccccCCCccceeEeeecccccccceeeeeec
Q 013841 129 DYFGSKKLHQITNG-TALTSSMFQATGSAPGSSGYVNVTDL-KGGKVGFGAEDNDGKLDATYVKSVAEFPYNISVLQISQ 206 (435)
Q Consensus 129 ~~~~s~~L~~l~~g-~~l~~Tl~q~tg~a~~~~g~vnit~~-~~g~V~~~~~~~g~~~~atvv~~v~~~~~ng~V~~Id~ 206 (435)
++|.+++|.....+ ...++|+.+.. ..+++++.. .++.+.+.. +...+++++. +....||+||.||+
T Consensus 84 g~~~~~~l~~~~~~~~~~~~Tl~g~~------~l~~~v~~~~~~~~v~v~~----g~~~a~v~~~-di~~~NGvIhvID~ 152 (324)
T 1o70_A 84 DRLNVDKIRQKNANLIAQVPTVNNNT------FLYFNVRGEGSDTVITVEG----GGVNATVIQA-DVAQTNGYVHIIDH 152 (324)
T ss_dssp SCCCHHHHHHHTSSSCCCEEBSSTTC------EEEEEEESCGGGCEEEEEE----TTEEEEEEEE-EEECSSEEEEEESS
T ss_pred CeecHHHHhhccCCCceEEEcCCCCc------eEEEEEeecCCceEEEEcC----CceeEEEEec-cccccCcEEEEEch
Confidence 99999998654321 11356664211 123455421 234566642 2234666654 22356999999999
Q ss_pred ccccCcCCCCCCCCCCCCHHHHHHhcC-hHHHHHHHHHcCchhhhcccCCCCeEEEecCcHHHHhhh----h-hhhcccH
Q 013841 207 VLNSDEAEAPTPGPSGLNLTAIMAKQG-CKAFADLLIATGAHTTFEENLDGGLTVFCPTDAVVNDFM----P-KYKNLTE 280 (435)
Q Consensus 207 vL~p~~~~ap~~~p~~~~i~~~L~~~g-~stf~~lL~~agL~~~L~~~~~~~~TVFAPTD~AF~~l~----~-~l~~l~~ 280 (435)
||.||. .++.++|++.+ |++|.++++.+|+.++|++. .++||||||+|+||+++. . .++.+..
T Consensus 153 VL~pp~----------~ti~~~l~~~~~fs~~~~~l~~~gl~~~L~~~-~~~~TvFAPtd~Af~~l~~~~~~~~~~~l~~ 221 (324)
T 1o70_A 153 VLGVPY----------TTVLGKLESDPMMSDTYKMGKFSHFNDQLNNT-QRRFTYFVPRDKGWQKTELDYPSAHKKLFMA 221 (324)
T ss_dssp CTTSCC----------SCHHHHHHHCGGGHHHHHHTTTTTTTGGGGCS-SSEEEEEEECHHHHHHHHHHCHHHHHHHTSG
T ss_pred hhhhch----------hhHHHHhhcCchHHHHHHHHHhhCHHHHhCCC-CCCeEEEEeChHHHHhhhhhchhHHHHHhcc
Confidence 999863 48999999988 99999999999999999842 279999999999999984 2 2333332
Q ss_pred ---HHHHhhcccccccc--ccchhhhcccCc-----cccccccCCCcceEEEEEEcCCeEEEeeCcccceEEeeeccCCC
Q 013841 281 ---AHKVSLLLYHGTPV--YQSLQTLKSSNG-----VMNTLATDGASKYDFTVQNDGEIVTLKTKATTAKITGTLKDEEP 350 (435)
Q Consensus 281 ---~~L~~lL~YHvvp~--~~~~~~l~~~~~-----~~~Tlag~~~~~~~l~v~~~g~~v~v~~gv~~a~V~~~~~~~~n 350 (435)
++|+++|+||++++ +|+.++|....+ .++|+. + ++.+++...|+.+.|+.+.+.++|+..++...|
T Consensus 222 ~~~~~l~~iL~yHvv~~~~~~~~~~l~~~~~~~~~~~~~Tl~-~---~l~v~~~~~~~~v~v~~~~~~a~v~~~di~~~N 297 (324)
T 1o70_A 222 DFSYHSKSILERHLAISDKEYTMKDLVKFSQESGSVILPTFR-D---SLSIRVEEEAGRYVIIWNYKKINVYRPDVECTN 297 (324)
T ss_dssp GGHHHHHHHHHTTEEEESSCCCHHHHHHHHHHSSSEEEECSS-S---EEEEEEEEETTEEEEEETTEEEEEEEEEEEETT
T ss_pred CcHHHHHHHHHhcEeCCcceEcHHHHhhhccCCCeeeeeccC-C---cEEEEEEecCCEEEEEecCceeEEEEcccccCC
Confidence 58999999999998 888888875322 377876 2 456666667888999866668899888888899
Q ss_pred eEEEEeCCccCCCCCCCC
Q 013841 351 LVIYKINKVLLPIELFKP 368 (435)
Q Consensus 351 gvIh~ID~VL~P~~l~~~ 368 (435)
||||+||+||+|++....
T Consensus 298 GvIHvID~VL~P~~~~~~ 315 (324)
T 1o70_A 298 GIIHVIDYPLLEEKDVVV 315 (324)
T ss_dssp EEEEEESSCSCCTTTTC-
T ss_pred CeEEEeceeecCCccccc
Confidence 999999999999976544
No 2
>1w7d_A Fasciclin-like protein; cell adhesion; NMR {Rhodobacter sphaeroides} PDB: 1w7e_A
Probab=99.92 E-value=2.9e-26 Score=201.73 Aligned_cols=129 Identities=23% Similarity=0.282 Sum_probs=111.0
Q ss_pred CCHHHHHHhcC-hHHHHHHHHHcCchhhhcccCCCCeEEEecCcHHHHhhhh-hhhcc----cHHHHHhhcccccccccc
Q 013841 223 LNLTAIMAKQG-CKAFADLLIATGAHTTFEENLDGGLTVFCPTDAVVNDFMP-KYKNL----TEAHKVSLLLYHGTPVYQ 296 (435)
Q Consensus 223 ~~i~~~L~~~g-~stf~~lL~~agL~~~L~~~~~~~~TVFAPTD~AF~~l~~-~l~~l----~~~~L~~lL~YHvvp~~~ 296 (435)
.+|.++|++.+ |++|.++|+++|+.+.|++. ++||||||+|+||+++.+ .++.+ +.++|+++|+||++++.+
T Consensus 3 ~~i~~~l~~~~~~s~f~~~l~~agl~~~L~~~--~~~TvFAPtn~Af~~l~~~~~~~l~~~~~~~~l~~lL~yHvv~~~~ 80 (137)
T 1w7d_A 3 GDIVETATGAGSFTTLLTAAEAAGLVDTLKGD--GPFTVFAPTDAAFAALPEGTVEDLLKPENKEKLTEILTYHVVPGEV 80 (137)
T ss_dssp STTGGGGGSCSSSTTTTHHHHHTTTHHHHTSS--SCEEEECCCHHHHTTSTTTHHHHTTSHHHHHHHHHHHHHHEEESCC
T ss_pred CCHHHHHHhCCCHHHHHHHHHHcCCHHHHcCC--CCEEEEEECHHHHHHcCHhHHHHHhCcCCHHHHHHHHHhhEeCcEE
Confidence 58899998877 99999999999999999987 899999999999999954 56666 567899999999999999
Q ss_pred chhhhcccCccccccccCCCcceEEEEEEcCCeEEEeeCcccceEEeeeccCCCeEEEEeCCccCCCC
Q 013841 297 SLQTLKSSNGVMNTLATDGASKYDFTVQNDGEIVTLKTKATTAKITGTLKDEEPLVIYKINKVLLPIE 364 (435)
Q Consensus 297 ~~~~l~~~~~~~~Tlag~~~~~~~l~v~~~g~~v~v~~gv~~a~V~~~~~~~~ngvIh~ID~VL~P~~ 364 (435)
+..+|.. ...++|+.|. .++|+..++ ++|+ +++|+..++...|||||+||+||+|+.
T Consensus 81 ~~~~l~~-~~~~~tl~G~-----~l~v~~~~g-v~vn----~a~v~~~di~~~NGvIHvID~VL~P~s 137 (137)
T 1w7d_A 81 MSSDLTE-GMTAETVEGG-----ALTVTLEGG-PKVN----GVSISQPDVDASNGVIHVIDGVLMPGA 137 (137)
T ss_dssp CTTTSCS-SEEEECTTSC-----EEEEECTTS-CEET----TEECSBCCCBCSSSEEEBCSSCCSSCC
T ss_pred cHHHhcC-CCeeeccCCc-----eEEEEecCC-EEEe----CcEEEECCeecCCeEEEEECeeeCCCC
Confidence 9999874 2357888763 688888777 8875 488888888889999999999999974
No 3
>2vxp_A Transforming growth factor-beta-induced protein IG-H3; RGD-containing collagen-associated protein, FAS1, BIGH3, vision, amyloid, RGD-CAP, secreted; 2.5A {Homo sapiens} PDB: 1x3b_A
Probab=99.92 E-value=5.2e-25 Score=192.48 Aligned_cols=127 Identities=17% Similarity=0.218 Sum_probs=108.1
Q ss_pred CCHHHHHHhcC-hHHHHHHHHHcCchhhhcccCCCCeEEEecCcHHHHhhhh-hhhcc--cHHHHHhhccccccccccch
Q 013841 223 LNLTAIMAKQG-CKAFADLLIATGAHTTFEENLDGGLTVFCPTDAVVNDFMP-KYKNL--TEAHKVSLLLYHGTPVYQSL 298 (435)
Q Consensus 223 ~~i~~~L~~~g-~stf~~lL~~agL~~~L~~~~~~~~TVFAPTD~AF~~l~~-~l~~l--~~~~L~~lL~YHvvp~~~~~ 298 (435)
.+|.++|++++ |++|.++|+++|+.+.|++. ++||||||+|+||+++.+ .++.+ +.++|+++|+||++++.++.
T Consensus 2 ~ti~~~l~~~~~fs~~~~~l~~agl~~~L~~~--~~~TvFAPtn~Af~~l~~~~~~~l~~~~~~l~~iL~yHvv~~~~~~ 79 (132)
T 2vxp_A 2 GTVMDVLKGDNRFSMLVAAIQSAGLTETLNRE--GVYTVFAPTNEAFRALPPRERSRLLGDAKELANILKYHIGDEILVS 79 (132)
T ss_dssp CCHHHHHTTSTTCHHHHHHHHHHTCHHHHHSS--CCEEEEEECHHHHHHSCHHHHHHHHTCHHHHHHHHHHSBBSSCCCS
T ss_pred ccHHHHHHcCCCHHHHHHHHHHcCcHHHHcCC--CCEEEEeECHHHHHhhCHHHHHHHhcCHHHHHHHHHhcCcCceeeh
Confidence 48999999887 99999999999999999987 899999999999999954 45544 67899999999999998888
Q ss_pred hhhcccCccccccccCCCcceEEEEEEcCCeEEEeeCcccceEEeeeccCCCeEEEEeCCccC
Q 013841 299 QTLKSSNGVMNTLATDGASKYDFTVQNDGEIVTLKTKATTAKITGTLKDEEPLVIYKINKVLL 361 (435)
Q Consensus 299 ~~l~~~~~~~~Tlag~~~~~~~l~v~~~g~~v~v~~gv~~a~V~~~~~~~~ngvIh~ID~VL~ 361 (435)
+++.. ...++|+.|. .++++..++.++|+ +++|+..++...|||||+||+||+
T Consensus 80 ~~l~~-~~~~~tl~G~-----~l~v~~~~~~v~vn----~a~v~~~di~a~NGvIHvID~VLl 132 (132)
T 2vxp_A 80 GGIGA-LVRLKSLQGD-----KLEVSLKNNVVSVN----KEPVAEPDIMATNGVVHVITNVLQ 132 (132)
T ss_dssp TTCSS-CEEEEBTTSS-----EEEEEEETTEEEES----SCBEEEEEEEETTEEEEEESSCC-
T ss_pred hhccC-CceEecCCCC-----EEEEEEeCCEEEEe----ccEEEEcceecCCEEEEEECcEeC
Confidence 87763 3467888763 67888888888885 478888888889999999999996
No 4
>1nyo_A Immunogenic protein MPT70; seven-stranded beta-barrel, fasciclin domain, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} SCOP: b.118.1.1
Probab=99.91 E-value=4.9e-25 Score=199.65 Aligned_cols=128 Identities=20% Similarity=0.262 Sum_probs=111.0
Q ss_pred CCCHHHHHHhcC-hHHHHHHHH-----HcCchhhhcccCCCCeEEEecCcHHHHhhhh-hhhcc--cHHHHHhhcccccc
Q 013841 222 GLNLTAIMAKQG-CKAFADLLI-----ATGAHTTFEENLDGGLTVFCPTDAVVNDFMP-KYKNL--TEAHKVSLLLYHGT 292 (435)
Q Consensus 222 ~~~i~~~L~~~g-~stf~~lL~-----~agL~~~L~~~~~~~~TVFAPTD~AF~~l~~-~l~~l--~~~~L~~lL~YHvv 292 (435)
..+|.++|++++ |++|.++|+ ++||.+.|++. + ||||||+|+||+++.. .++.| +.++|+++|+|||+
T Consensus 27 ~~~i~~~l~~~~~~s~f~~~l~~~~~~~agl~~~L~~~--g-~TvFAPtn~AF~~l~~~~~~~L~~~~~~L~~iL~yHvv 103 (163)
T 1nyo_A 27 QDPVAVAASNNPELTTLTAALSGQLNPQVNLVDTLNSG--Q-YTVFAPTNAAFSKLPASTIDELKTNSSLLTSILTYHVV 103 (163)
T ss_dssp HSCHHHHHTTSTTTHHHHHHHHSSSCTTCCCHHHHTSS--S-EEECCBCHHHHHHSCHHHHHHHTTCSSHHHHHHHHTEE
T ss_pred CcCHHHHHHhCCCHHHHHHHHHhccccccCHHHHhCCC--C-cEEEEECHHHHHhccHHHHHHHhcCHHHHHHHHHhceE
Confidence 358999999888 999999999 99999999987 6 9999999999999954 56665 45789999999999
Q ss_pred ccccchhhhcccCccccccccCCCcceEEEEEEcCCeEEEeeCcccceEEeeeccCCCeEEEEeCCccCCCC
Q 013841 293 PVYQSLQTLKSSNGVMNTLATDGASKYDFTVQNDGEIVTLKTKATTAKITGTLKDEEPLVIYKINKVLLPIE 364 (435)
Q Consensus 293 p~~~~~~~l~~~~~~~~Tlag~~~~~~~l~v~~~g~~v~v~~gv~~a~V~~~~~~~~ngvIh~ID~VL~P~~ 364 (435)
++.+..++|. +.++|+.|. .|+|+..++.++|+ +++|+..++...|||||+||+||+|+.
T Consensus 104 ~g~~~~~~l~---g~~~Tl~G~-----~l~v~~~~~~v~vn----~a~V~~~di~a~NGvIHvID~VL~P~~ 163 (163)
T 1nyo_A 104 AGQTSPANVV---GTRQTLQGA-----SVTVTGQGNSLKVG----NADVVCGGVSTANATVYMIDSVLMPPA 163 (163)
T ss_dssp ESCCCTTTSC---EEEECTTSS-----EEEEEECSSCEEET----TEECSSBCCCCSSEEEBCBSSCCCCCC
T ss_pred CCEEcHHHhC---CccccCCCC-----EEEEEEECCEEEEe----ccEEEECceEcCCEEEEEECcEeCCCC
Confidence 9999999886 578898763 68888888888885 488888888889999999999999973
No 5
>1o70_A Fasciclin I, FAS I, FCN; cell adhesion, AXON guidance, extracellular module, genetic disorder, corneal dystrophy; HET: NAG; 2.6A {Drosophila melanogaster} SCOP: b.118.1.1 b.118.1.1
Probab=99.83 E-value=7.8e-21 Score=189.53 Aligned_cols=137 Identities=13% Similarity=0.183 Sum_probs=103.6
Q ss_pred CCHHHHHH------hcC-hHHHHHHHHHcC--chhhhcccCCCCeEEEecCcHHHHhhh-hhhhcccHHHHHhhcccccc
Q 013841 223 LNLTAIMA------KQG-CKAFADLLIATG--AHTTFEENLDGGLTVFCPTDAVVNDFM-PKYKNLTEAHKVSLLLYHGT 292 (435)
Q Consensus 223 ~~i~~~L~------~~g-~stf~~lL~~ag--L~~~L~~~~~~~~TVFAPTD~AF~~l~-~~l~~l~~~~L~~lL~YHvv 292 (435)
.||+++|+ +.+ |++|.++|+++| |.++|++. ++||||||+|+||+++. ..+. .+.+.|+++|+|||+
T Consensus 6 ~~i~~~L~~~~~~~~~~~~s~~~~~l~~ag~~l~~~L~~~--~~~TvFAPtn~Af~~~~~~~l~-~~~~~l~~iL~yHvv 82 (324)
T 1o70_A 6 TTVTQFLQSFKENAENGALRKFYEVIMDNGGAVLDDINSL--TEVTILAPSNEAWNSSNINNVL-RDRNKMRQILNMHII 82 (324)
T ss_dssp -------------CCHHHHHHHHHHHHHTCSHHHHHHHTC--SSEEEEEECHHHHHHTCTHHHH-TCHHHHHHHHHHTEE
T ss_pred hhHHHHHHHHHhhhcCCcHHHHHHHHHHHhHHHHHHHcCC--CCeEEEEEChHhhhcccHhhhh-CCHHHHHHHHHhcEe
Confidence 58888888 455 999999999999 99999987 89999999999998862 2221 267899999999999
Q ss_pred ccccchhhhcccCc----cccccccCCCcceEEEEEEc--CCeEEEeeCcccceEEeeeccCCCeEEEEeCCccCCCC
Q 013841 293 PVYQSLQTLKSSNG----VMNTLATDGASKYDFTVQND--GEIVTLKTKATTAKITGTLKDEEPLVIYKINKVLLPIE 364 (435)
Q Consensus 293 p~~~~~~~l~~~~~----~~~Tlag~~~~~~~l~v~~~--g~~v~v~~gv~~a~V~~~~~~~~ngvIh~ID~VL~P~~ 364 (435)
++++...+|....+ .++|+.|.. .+.+++... ++.++++.+..+|+|+..++...|||||+||+||+|+.
T Consensus 83 ~g~~~~~~l~~~~~~~~~~~~Tl~g~~--~l~~~v~~~~~~~~v~v~~g~~~a~v~~~di~~~NGvIhvID~VL~pp~ 158 (324)
T 1o70_A 83 KDRLNVDKIRQKNANLIAQVPTVNNNT--FLYFNVRGEGSDTVITVEGGGVNATVIQADVAQTNGYVHIIDHVLGVPY 158 (324)
T ss_dssp SSCCCHHHHHHHTSSSCCCEEBSSTTC--EEEEEEESCGGGCEEEEEETTEEEEEEEEEEECSSEEEEEESSCTTSCC
T ss_pred CCeecHHHHhhccCCCceEEEcCCCCc--eEEEEEeecCCceEEEEcCCceeEEEEeccccccCcEEEEEchhhhhch
Confidence 99999999875431 578887641 245566532 34688877656799998888999999999999999964
No 6
>1w7d_A Fasciclin-like protein; cell adhesion; NMR {Rhodobacter sphaeroides} PDB: 1w7e_A
Probab=99.82 E-value=1.3e-20 Score=165.54 Aligned_cols=128 Identities=21% Similarity=0.243 Sum_probs=100.2
Q ss_pred cccHHHHHccCCCcHHHHHHHHHhchhhHhcCCCceEEEEeCcHHHHhhhhcC---C----CHHHHHHHHhhcccccccC
Q 013841 60 AHNITRILAKHPEFSTFNHYLTVTHLAAEINRRQTITVLALDNSAMSSLLSKQ---L----SVYTLRNVLSLHVLTDYFG 132 (435)
Q Consensus 60 a~ni~~~L~~~~~~Stf~~lL~~tgL~~~L~~~~~~TVfAPtN~AF~~l~~~~---~----~~~~L~~lL~yHVl~~~~~ 132 (435)
.+||.++|.++++||+|.++|+++||.+.|++.++||||||+|+||+++..+. + +.+.|+++|+|||+++++.
T Consensus 2 ~~~i~~~l~~~~~~s~f~~~l~~agl~~~L~~~~~~TvFAPtn~Af~~l~~~~~~~l~~~~~~~~l~~lL~yHvv~~~~~ 81 (137)
T 1w7d_A 2 TGDIVETATGAGSFTTLLTAAEAAGLVDTLKGDGPFTVFAPTDAAFAALPEGTVEDLLKPENKEKLTEILTYHVVPGEVM 81 (137)
T ss_dssp CSTTGGGGGSCSSSTTTTHHHHHTTTHHHHTSSSCEEEECCCHHHHTTSTTTHHHHTTSHHHHHHHHHHHHHHEEESCCC
T ss_pred CCCHHHHHHhCCCHHHHHHHHHHcCCHHHHcCCCCEEEEEECHHHHHHcCHhHHHHHhCcCCHHHHHHHHHhhEeCcEEc
Confidence 46899999999999999999999999999999999999999999999986531 2 5778999999999999999
Q ss_pred ccccccccCCceeecccccccCCCCCCCCeEEEEEcCCCeEEEccccCCCccceeEeeecccccccceeeeeecccccC
Q 013841 133 SKKLHQITNGTALTSSMFQATGSAPGSSGYVNVTDLKGGKVGFGAEDNDGKLDATYVKSVAEFPYNISVLQISQVLNSD 211 (435)
Q Consensus 133 s~~L~~l~~g~~l~~Tl~q~tg~a~~~~g~vnit~~~~g~V~~~~~~~g~~~~atvv~~v~~~~~ng~V~~Id~vL~p~ 211 (435)
+++|. ++.. ++|+. | ..+.|+. .+| +.++. +.+++. +....||+||.||+||.|+
T Consensus 82 ~~~l~---~~~~-~~tl~---G------~~l~v~~-~~g-v~vn~--------a~v~~~-di~~~NGvIHvID~VL~P~ 136 (137)
T 1w7d_A 82 SSDLT---EGMT-AETVE---G------GALTVTL-EGG-PKVNG--------VSISQP-DVDASNGVIHVIDGVLMPG 136 (137)
T ss_dssp TTTSC---SSEE-EECTT---S------CEEEEEC-TTS-CEETT--------EECSBC-CCBCSSSEEEBCSSCCSSC
T ss_pred HHHhc---CCCe-eeccC---C------ceEEEEe-cCC-EEEeC--------cEEEEC-CeecCCeEEEEECeeeCCC
Confidence 98884 3422 45541 1 3477775 456 77742 333332 1234699999999999986
No 7
>2vxp_A Transforming growth factor-beta-induced protein IG-H3; RGD-containing collagen-associated protein, FAS1, BIGH3, vision, amyloid, RGD-CAP, secreted; 2.5A {Homo sapiens} PDB: 1x3b_A
Probab=99.81 E-value=1.9e-19 Score=157.13 Aligned_cols=126 Identities=21% Similarity=0.221 Sum_probs=97.1
Q ss_pred ccHHHHHccCCCcHHHHHHHHHhchhhHhcCCCceEEEEeCcHHHHhhhhcC-----CCHHHHHHHHhhcccccccCccc
Q 013841 61 HNITRILAKHPEFSTFNHYLTVTHLAAEINRRQTITVLALDNSAMSSLLSKQ-----LSVYTLRNVLSLHVLTDYFGSKK 135 (435)
Q Consensus 61 ~ni~~~L~~~~~~Stf~~lL~~tgL~~~L~~~~~~TVfAPtN~AF~~l~~~~-----~~~~~L~~lL~yHVl~~~~~s~~ 135 (435)
++|.++|.++++||+|.++++++||.+.|++.++||||||+|+||++++.+. .+++.|+++|+|||+++.+.+.+
T Consensus 2 ~ti~~~l~~~~~fs~~~~~l~~agl~~~L~~~~~~TvFAPtn~Af~~l~~~~~~~l~~~~~~l~~iL~yHvv~~~~~~~~ 81 (132)
T 2vxp_A 2 GTVMDVLKGDNRFSMLVAAIQSAGLTETLNREGVYTVFAPTNEAFRALPPRERSRLLGDAKELANILKYHIGDEILVSGG 81 (132)
T ss_dssp CCHHHHHTTSTTCHHHHHHHHHHTCHHHHHSSCCEEEEEECHHHHHHSCHHHHHHHHTCHHHHHHHHHHSBBSSCCCSTT
T ss_pred ccHHHHHHcCCCHHHHHHHHHHcCcHHHHcCCCCEEEEeECHHHHHhhCHHHHHHHhcCHHHHHHHHHhcCcCceeehhh
Confidence 5799999999999999999999999999999999999999999999986542 26789999999999999988877
Q ss_pred cccccCCceeecccccccCCCCCCCCeEEEEEcCCCeEEEccccCCCccceeEeeecccccccceeeeeecccc
Q 013841 136 LHQITNGTALTSSMFQATGSAPGSSGYVNVTDLKGGKVGFGAEDNDGKLDATYVKSVAEFPYNISVLQISQVLN 209 (435)
Q Consensus 136 L~~l~~g~~l~~Tl~q~tg~a~~~~g~vnit~~~~g~V~~~~~~~g~~~~atvv~~v~~~~~ng~V~~Id~vL~ 209 (435)
+. .+ ..++|+. | ..+.|+. .+|.+.++. +.+++.. ....||+||.||+||+
T Consensus 82 l~---~~-~~~~tl~---G------~~l~v~~-~~~~v~vn~--------a~v~~~d-i~a~NGvIHvID~VLl 132 (132)
T 2vxp_A 82 IG---AL-VRLKSLQ---G------DKLEVSL-KNNVVSVNK--------EPVAEPD-IMATNGVVHVITNVLQ 132 (132)
T ss_dssp CS---SC-EEEEBTT---S------SEEEEEE-ETTEEEESS--------CBEEEEE-EEETTEEEEEESSCC-
T ss_pred cc---CC-ceEecCC---C------CEEEEEE-eCCEEEEec--------cEEEEcc-eecCCEEEEEECcEeC
Confidence 73 22 2345542 1 2466765 466777742 2344321 2246999999999984
No 8
>1nyo_A Immunogenic protein MPT70; seven-stranded beta-barrel, fasciclin domain, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} SCOP: b.118.1.1
Probab=99.78 E-value=3.7e-19 Score=160.94 Aligned_cols=127 Identities=25% Similarity=0.329 Sum_probs=99.5
Q ss_pred CcccHHHHHccCCCcHHHHHHHH-----HhchhhHhcCCCceEEEEeCcHHHHhhhhcC-----CCHHHHHHHHhhcccc
Q 013841 59 HAHNITRILAKHPEFSTFNHYLT-----VTHLAAEINRRQTITVLALDNSAMSSLLSKQ-----LSVYTLRNVLSLHVLT 128 (435)
Q Consensus 59 ~a~ni~~~L~~~~~~Stf~~lL~-----~tgL~~~L~~~~~~TVfAPtN~AF~~l~~~~-----~~~~~L~~lL~yHVl~ 128 (435)
...+|.++|.++++||+|.++|+ ++||.+.|++.+ ||||||+|+||+++.... .+++.|+++|+|||++
T Consensus 26 ~~~~i~~~l~~~~~~s~f~~~l~~~~~~~agl~~~L~~~g-~TvFAPtn~AF~~l~~~~~~~L~~~~~~L~~iL~yHvv~ 104 (163)
T 1nyo_A 26 SQDPVAVAASNNPELTTLTAALSGQLNPQVNLVDTLNSGQ-YTVFAPTNAAFSKLPASTIDELKTNSSLLTSILTYHVVA 104 (163)
T ss_dssp HHSCHHHHHTTSTTTHHHHHHHHSSSCTTCCCHHHHTSSS-EEECCBCHHHHHHSCHHHHHHHTTCSSHHHHHHHHTEEE
T ss_pred CCcCHHHHHHhCCCHHHHHHHHHhccccccCHHHHhCCCC-cEEEEECHHHHHhccHHHHHHHhcCHHHHHHHHHhceEC
Confidence 35799999999999999999999 999999999988 999999999999986431 1457899999999999
Q ss_pred cccCccccccccCCceeecccccccCCCCCCCCeEEEEEcCCCeEEEccccCCCccceeEeeecccccccceeeeeeccc
Q 013841 129 DYFGSKKLHQITNGTALTSSMFQATGSAPGSSGYVNVTDLKGGKVGFGAEDNDGKLDATYVKSVAEFPYNISVLQISQVL 208 (435)
Q Consensus 129 ~~~~s~~L~~l~~g~~l~~Tl~q~tg~a~~~~g~vnit~~~~g~V~~~~~~~g~~~~atvv~~v~~~~~ng~V~~Id~vL 208 (435)
+++.+++|. + .++|+. | ..++|+. .++.+.++. +.+++. +....||+||.||+||
T Consensus 105 g~~~~~~l~----g--~~~Tl~---G------~~l~v~~-~~~~v~vn~--------a~V~~~-di~a~NGvIHvID~VL 159 (163)
T 1nyo_A 105 GQTSPANVV----G--TRQTLQ---G------ASVTVTG-QGNSLKVGN--------ADVVCG-GVSTANATVYMIDSVL 159 (163)
T ss_dssp SCCCTTTSC----E--EEECTT---S------SEEEEEE-CSSCEEETT--------EECSSB-CCCCSSEEEBCBSSCC
T ss_pred CEEcHHHhC----C--ccccCC---C------CEEEEEE-ECCEEEEec--------cEEEEC-ceEcCCEEEEEECcEe
Confidence 999999883 2 245541 1 3477775 456677742 334432 1234699999999999
Q ss_pred ccC
Q 013841 209 NSD 211 (435)
Q Consensus 209 ~p~ 211 (435)
+|+
T Consensus 160 ~P~ 162 (163)
T 1nyo_A 160 MPP 162 (163)
T ss_dssp CCC
T ss_pred CCC
Confidence 986
No 9
>2k0l_A Outer membrane protein A; OMPA, trosy, sidechain, DHPC micelles; NMR {Klebsiella pneumoniae}
Probab=20.78 E-value=49 Score=29.31 Aligned_cols=11 Identities=45% Similarity=0.782 Sum_probs=4.4
Q ss_pred CCCCCCCCCCC
Q 013841 372 TEAPAPAPTPH 382 (435)
Q Consensus 372 ~~ap~p~~~~~ 382 (435)
+|.+||+|+|+
T Consensus 198 ~pv~ap~~~~~ 208 (216)
T 2k0l_A 198 APVVAPAPAPA 208 (216)
T ss_dssp CCCCSSSCCCS
T ss_pred CcccCCCCCCC
Confidence 33344444443
No 10
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=4.82 E-value=3.8e+02 Score=20.65 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=17.0
Q ss_pred HHHHHHhcC---hHHHHHHHHHcC---chhhhc
Q 013841 225 LTAIMAKQG---CKAFADLLIATG---AHTTFE 251 (435)
Q Consensus 225 i~~~L~~~g---~stf~~lL~~ag---L~~~L~ 251 (435)
+.+.|.+.| |..|..+|..+| |.+.|+
T Consensus 59 Lld~L~~rG~~Af~~F~~aL~et~~~~La~lL~ 91 (97)
T 3ygs_P 59 LIIDLETRGSQALPLFISCLEDTGQDMLASFLR 91 (97)
T ss_dssp HHHHHTTSCTTHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHcChHHHHHHHHHHHHcCcHHHHHHHc
Confidence 555555554 888888887755 444443
Done!