Query 013843
Match_columns 435
No_of_seqs 506 out of 3532
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 07:57:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013843.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013843hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0543 FKBP-type peptidyl-pro 100.0 8E-58 1.7E-62 424.2 36.2 321 54-435 1-325 (397)
2 KOG0549 FKBP-type peptidyl-pro 100.0 7.6E-28 1.7E-32 199.3 16.2 176 94-305 1-180 (188)
3 COG0545 FkpA FKBP-type peptidy 100.0 1.9E-28 4.2E-33 207.9 12.7 116 33-153 88-204 (205)
4 KOG0544 FKBP-type peptidyl-pro 100.0 4.1E-28 9E-33 176.5 11.9 105 47-153 2-107 (108)
5 KOG0545 Aryl-hydrocarbon recep 100.0 9.7E-28 2.1E-32 207.6 15.3 246 162-433 9-296 (329)
6 PRK11570 peptidyl-prolyl cis-t 99.9 6.6E-24 1.4E-28 187.3 13.7 113 36-153 92-205 (206)
7 KOG0549 FKBP-type peptidyl-pro 99.9 4.5E-23 9.8E-28 171.0 13.5 110 44-155 66-177 (188)
8 KOG0543 FKBP-type peptidyl-pro 99.9 2.2E-22 4.7E-27 188.0 18.2 272 42-431 80-356 (397)
9 KOG0544 FKBP-type peptidyl-pro 99.9 6E-23 1.3E-27 149.6 11.2 106 164-300 2-107 (108)
10 TIGR03516 ppisom_GldI peptidyl 99.9 1.4E-22 3E-27 174.6 13.1 110 41-154 64-176 (177)
11 KOG0552 FKBP-type peptidyl-pro 99.9 2.1E-22 4.6E-27 175.8 13.5 108 42-153 116-225 (226)
12 PRK10902 FKBP-type peptidyl-pr 99.9 7E-22 1.5E-26 180.8 14.2 115 36-155 136-250 (269)
13 COG0545 FkpA FKBP-type peptidy 99.9 6.5E-21 1.4E-25 162.1 12.0 106 161-300 99-204 (205)
14 PF00254 FKBP_C: FKBP-type pep 99.8 3.2E-19 7E-24 139.2 9.8 92 58-151 1-94 (94)
15 KOG0553 TPR repeat-containing 99.8 3.7E-19 8E-24 160.1 11.3 108 313-435 76-183 (304)
16 PRK15095 FKBP-type peptidyl-pr 99.8 3.3E-18 7.1E-23 144.7 11.0 124 61-201 4-137 (156)
17 KOG4234 TPR repeat-containing 99.8 1.1E-17 2.3E-22 141.4 12.8 113 312-434 89-201 (271)
18 COG1047 SlpA FKBP-type peptidy 99.7 8.9E-18 1.9E-22 140.7 9.8 130 61-201 2-134 (174)
19 PRK11570 peptidyl-prolyl cis-t 99.7 2.1E-16 4.6E-21 139.7 13.7 106 161-300 100-205 (206)
20 PRK10737 FKBP-type peptidyl-pr 99.7 8.5E-17 1.8E-21 139.4 10.9 123 61-201 2-133 (196)
21 TIGR03516 ppisom_GldI peptidyl 99.7 2E-15 4.3E-20 130.2 13.3 107 162-301 68-176 (177)
22 KOG0552 FKBP-type peptidyl-pro 99.6 2.4E-15 5.3E-20 131.7 11.9 81 214-300 143-225 (226)
23 PF00254 FKBP_C: FKBP-type pep 99.6 5.6E-15 1.2E-19 115.2 12.7 81 215-298 14-94 (94)
24 KOG0547 Translocase of outer m 99.6 2.1E-15 4.6E-20 143.1 10.7 104 308-426 105-208 (606)
25 PRK10902 FKBP-type peptidyl-pr 99.6 1.3E-14 2.9E-19 133.0 14.0 108 161-303 144-251 (269)
26 KOG0548 Molecular co-chaperone 99.6 5E-15 1.1E-19 142.5 11.2 104 317-435 357-460 (539)
27 KOG4648 Uncharacterized conser 99.6 5.9E-15 1.3E-19 134.5 9.3 109 311-434 90-198 (536)
28 PRK15359 type III secretion sy 99.5 2.3E-13 4.9E-18 114.8 12.9 101 320-435 26-126 (144)
29 PLN03088 SGT1, suppressor of 99.5 1.5E-13 3.2E-18 133.5 13.3 102 319-435 3-104 (356)
30 TIGR00990 3a0801s09 mitochondr 99.5 2.5E-13 5.4E-18 142.3 15.1 132 285-433 95-226 (615)
31 KOG0551 Hsp90 co-chaperone CNS 99.5 2.2E-13 4.8E-18 123.9 9.6 108 315-433 78-185 (390)
32 KOG0548 Molecular co-chaperone 99.5 2.1E-13 4.6E-18 131.4 9.6 103 318-435 2-104 (539)
33 KOG0550 Molecular chaperone (D 99.4 3.6E-13 7.9E-18 125.8 9.6 110 313-433 244-353 (486)
34 PRK15363 pathogenicity island 99.4 1.4E-12 3.1E-17 108.5 12.0 101 316-431 33-133 (157)
35 TIGR02552 LcrH_SycD type III s 99.4 9.8E-12 2.1E-16 103.7 13.1 104 317-435 16-119 (135)
36 PRK11189 lipoprotein NlpI; Pro 99.3 1.3E-11 2.7E-16 117.3 13.8 105 316-435 62-166 (296)
37 PF13414 TPR_11: TPR repeat; P 99.3 5.7E-12 1.2E-16 92.0 8.2 66 367-432 3-69 (69)
38 PRK15095 FKBP-type peptidyl-pr 99.3 1.1E-11 2.5E-16 104.9 10.2 64 214-278 13-76 (156)
39 KOG4642 Chaperone-dependent E3 99.3 6.1E-12 1.3E-16 109.7 7.6 101 316-431 8-108 (284)
40 PRK10370 formate-dependent nit 99.3 8.6E-11 1.9E-15 104.5 13.4 103 317-434 72-177 (198)
41 TIGR02795 tol_pal_ybgF tol-pal 99.2 2E-10 4.4E-15 93.1 13.6 106 318-435 2-110 (119)
42 PRK02603 photosystem I assembl 99.2 2.1E-10 4.5E-15 100.0 13.8 110 313-434 30-153 (172)
43 KOG0376 Serine-threonine phosp 99.2 1.6E-11 3.5E-16 117.7 5.3 104 317-435 3-106 (476)
44 KOG4626 O-linked N-acetylgluco 99.2 1.3E-10 2.9E-15 113.7 10.2 103 315-432 351-453 (966)
45 KOG4626 O-linked N-acetylgluco 99.2 1.2E-10 2.7E-15 113.9 9.7 99 320-433 390-488 (966)
46 PF12895 Apc3: Anaphase-promot 99.2 1.5E-10 3.2E-15 88.1 8.1 83 331-427 2-84 (84)
47 PF13432 TPR_16: Tetratricopep 99.2 1.1E-10 2.4E-15 84.1 6.9 65 371-435 1-65 (65)
48 CHL00033 ycf3 photosystem I as 99.1 9.9E-10 2.1E-14 95.3 14.1 110 313-434 30-153 (168)
49 cd00189 TPR Tetratricopeptide 99.1 7.4E-10 1.6E-14 84.6 11.1 99 320-433 2-100 (100)
50 TIGR00990 3a0801s09 mitochondr 99.1 8.1E-10 1.8E-14 115.9 13.9 102 317-433 330-431 (615)
51 COG1047 SlpA FKBP-type peptidy 99.1 7.4E-10 1.6E-14 93.2 9.8 64 214-278 11-74 (174)
52 PF13414 TPR_11: TPR repeat; P 99.1 3E-10 6.5E-15 82.8 6.3 67 317-398 2-69 (69)
53 KOG0624 dsRNA-activated protei 99.1 4.7E-10 1E-14 102.9 8.8 104 316-434 36-139 (504)
54 COG3063 PilF Tfp pilus assembl 99.0 3E-09 6.6E-14 92.9 12.0 101 313-428 30-130 (250)
55 PRK15331 chaperone protein Sic 99.0 2E-09 4.4E-14 90.1 10.1 99 316-429 35-133 (165)
56 PRK10737 FKBP-type peptidyl-pr 99.0 1.8E-09 3.9E-14 94.0 10.0 63 214-278 11-73 (196)
57 KOG1125 TPR repeat-containing 99.0 6.4E-10 1.4E-14 108.6 7.8 99 321-434 433-531 (579)
58 PRK09782 bacteriophage N4 rece 99.0 3.4E-09 7.3E-14 114.7 13.7 102 318-434 609-710 (987)
59 TIGR03302 OM_YfiO outer membra 99.0 4.7E-09 1E-13 96.3 12.7 107 316-434 31-148 (235)
60 KOG0545 Aryl-hydrocarbon recep 99.0 4.8E-10 1E-14 98.3 4.8 255 43-410 7-307 (329)
61 KOG0547 Translocase of outer m 99.0 2.2E-09 4.7E-14 102.8 9.6 105 315-434 323-427 (606)
62 PRK12370 invasion protein regu 99.0 5.3E-09 1.1E-13 108.1 12.5 89 331-434 317-405 (553)
63 KOG4555 TPR repeat-containing 99.0 2.5E-08 5.4E-13 79.2 13.2 105 312-431 37-145 (175)
64 PRK15359 type III secretion sy 98.9 4.1E-09 8.9E-14 88.8 9.2 80 338-435 13-92 (144)
65 KOG1173 Anaphase-promoting com 98.9 5.8E-09 1.2E-13 101.6 10.0 106 321-434 417-522 (611)
66 PRK10803 tol-pal system protei 98.9 3.4E-08 7.4E-13 91.3 14.2 104 319-434 143-250 (263)
67 PF13512 TPR_18: Tetratricopep 98.9 6.3E-08 1.4E-12 79.5 13.7 105 318-434 10-132 (142)
68 KOG1126 DNA-binding cell divis 98.9 1.8E-09 3.8E-14 107.1 5.4 119 317-435 420-557 (638)
69 KOG0624 dsRNA-activated protei 98.9 6.1E-09 1.3E-13 95.7 8.2 114 311-435 262-375 (504)
70 TIGR02521 type_IV_pilW type IV 98.9 3.7E-08 7.9E-13 89.0 13.6 98 317-429 30-127 (234)
71 KOG1308 Hsp70-interacting prot 98.9 1.1E-09 2.4E-14 100.6 3.2 108 310-432 106-213 (377)
72 TIGR02521 type_IV_pilW type IV 98.9 4.3E-08 9.3E-13 88.6 13.6 102 320-434 101-202 (234)
73 PRK15179 Vi polysaccharide bio 98.9 1.8E-08 4E-13 105.1 12.5 104 316-434 84-187 (694)
74 PRK12370 invasion protein regu 98.9 2.4E-08 5.2E-13 103.2 13.3 101 319-434 339-440 (553)
75 COG3063 PilF Tfp pilus assembl 98.8 3.4E-08 7.4E-13 86.4 11.4 103 318-435 69-173 (250)
76 PRK10370 formate-dependent nit 98.8 3E-08 6.4E-13 88.2 10.9 91 330-435 51-144 (198)
77 KOG1155 Anaphase-promoting com 98.8 1.6E-08 3.4E-13 96.4 9.5 97 324-435 336-432 (559)
78 PF13371 TPR_9: Tetratricopept 98.8 1.4E-08 3.1E-13 74.7 7.1 61 374-434 2-62 (73)
79 COG0544 Tig FKBP-type peptidyl 98.8 1.2E-08 2.6E-13 100.6 8.3 98 62-168 158-255 (441)
80 PRK11189 lipoprotein NlpI; Pro 98.8 3.7E-08 8.1E-13 93.5 11.4 92 332-434 40-131 (296)
81 PRK09782 bacteriophage N4 rece 98.8 5.3E-08 1.1E-12 105.6 13.5 91 329-435 587-677 (987)
82 PRK15174 Vi polysaccharide exp 98.8 7.4E-08 1.6E-12 101.4 13.3 98 321-433 249-350 (656)
83 PRK15174 Vi polysaccharide exp 98.8 7.9E-08 1.7E-12 101.2 13.5 102 318-434 284-385 (656)
84 PF13432 TPR_16: Tetratricopep 98.8 2.3E-08 5E-13 71.8 6.4 64 323-401 2-65 (65)
85 KOG1126 DNA-binding cell divis 98.7 3.1E-08 6.7E-13 98.4 9.1 104 316-434 487-590 (638)
86 PF13424 TPR_12: Tetratricopep 98.7 3.4E-08 7.3E-13 73.8 7.1 67 365-431 3-76 (78)
87 COG5010 TadD Flp pilus assembl 98.7 1.3E-07 2.8E-12 84.5 11.7 101 319-434 101-201 (257)
88 TIGR03302 OM_YfiO outer membra 98.7 2.2E-07 4.8E-12 85.1 13.9 104 319-434 71-199 (235)
89 PRK11447 cellulose synthase su 98.7 1.8E-07 3.8E-12 105.0 15.8 115 318-434 303-418 (1157)
90 PLN02789 farnesyltranstransfer 98.7 1.7E-07 3.7E-12 89.3 13.3 102 318-434 71-175 (320)
91 KOG2076 RNA polymerase III tra 98.7 1.4E-07 3.1E-12 96.6 13.3 103 317-434 138-240 (895)
92 KOG4162 Predicted calmodulin-b 98.7 1.1E-07 2.3E-12 96.0 12.1 103 318-435 684-788 (799)
93 PRK15179 Vi polysaccharide bio 98.7 1.1E-07 2.4E-12 99.2 12.4 103 315-432 117-219 (694)
94 KOG1155 Anaphase-promoting com 98.7 1.2E-07 2.7E-12 90.5 11.5 97 320-431 366-462 (559)
95 KOG0546 HSP90 co-chaperone CPR 98.7 7.4E-09 1.6E-13 95.8 2.7 125 311-435 215-343 (372)
96 TIGR02552 LcrH_SycD type III s 98.7 8.3E-08 1.8E-12 79.8 8.8 81 339-434 4-84 (135)
97 PLN03098 LPA1 LOW PSII ACCUMUL 98.7 6.5E-08 1.4E-12 93.6 9.1 64 367-430 75-141 (453)
98 TIGR00115 tig trigger factor. 98.7 6.1E-08 1.3E-12 96.4 9.3 100 60-168 145-244 (408)
99 PF13429 TPR_15: Tetratricopep 98.7 7.2E-08 1.6E-12 90.9 8.8 113 318-430 146-277 (280)
100 PRK01490 tig trigger factor; P 98.7 7.9E-08 1.7E-12 96.3 9.4 98 61-167 157-254 (435)
101 COG4785 NlpI Lipoprotein NlpI, 98.7 6.3E-08 1.4E-12 83.8 7.3 106 315-435 62-167 (297)
102 PRK11788 tetratricopeptide rep 98.7 3.7E-07 8E-12 90.2 14.1 104 321-434 144-247 (389)
103 PRK10049 pgaA outer membrane p 98.6 3E-07 6.5E-12 98.8 13.8 101 318-434 49-149 (765)
104 PRK11447 cellulose synthase su 98.6 4.6E-07 1E-11 101.7 15.5 118 318-435 385-529 (1157)
105 PF14559 TPR_19: Tetratricopep 98.6 3.7E-08 8.1E-13 71.4 4.5 58 377-434 1-58 (68)
106 PF13525 YfiO: Outer membrane 98.6 7.2E-07 1.6E-11 79.8 13.7 107 317-435 4-124 (203)
107 PF09976 TPR_21: Tetratricopep 98.6 4.4E-07 9.4E-12 76.6 11.7 98 318-428 48-145 (145)
108 PRK10049 pgaA outer membrane p 98.6 3.8E-07 8.2E-12 98.0 14.0 103 318-435 359-461 (765)
109 PF14559 TPR_19: Tetratricopep 98.6 1E-07 2.2E-12 69.0 6.4 67 328-409 1-67 (68)
110 PF12688 TPR_5: Tetratrico pep 98.6 6.9E-07 1.5E-11 72.1 11.6 99 319-429 2-103 (120)
111 COG1729 Uncharacterized protei 98.6 9.5E-07 2E-11 80.0 13.2 104 319-434 142-248 (262)
112 TIGR02917 PEP_TPR_lipo putativ 98.6 4.6E-07 1E-11 98.6 13.5 104 316-434 123-226 (899)
113 PRK11788 tetratricopeptide rep 98.6 8.2E-07 1.8E-11 87.7 13.8 114 320-434 182-315 (389)
114 PRK10866 outer membrane biogen 98.6 8.6E-07 1.9E-11 81.4 12.8 105 318-434 32-157 (243)
115 PF13371 TPR_9: Tetratricopept 98.6 3.6E-07 7.7E-12 67.2 8.4 70 325-409 2-71 (73)
116 PF13424 TPR_12: Tetratricopep 98.6 6E-07 1.3E-11 66.9 9.3 74 316-397 3-76 (78)
117 PRK15363 pathogenicity island 98.5 5.2E-07 1.1E-11 75.4 9.2 68 368-435 36-103 (157)
118 KOG0550 Molecular chaperone (D 98.5 2.2E-07 4.7E-12 87.7 7.4 114 317-433 202-319 (486)
119 PLN02789 farnesyltranstransfer 98.5 6.3E-07 1.4E-11 85.4 10.7 92 328-434 47-141 (320)
120 KOG2003 TPR repeat-containing 98.5 1.5E-07 3.2E-12 89.6 6.1 101 320-435 492-592 (840)
121 KOG0553 TPR repeat-containing 98.5 3.1E-07 6.7E-12 83.7 8.0 64 370-433 84-147 (304)
122 TIGR02917 PEP_TPR_lipo putativ 98.5 1E-06 2.2E-11 96.0 13.3 99 320-434 772-870 (899)
123 COG4235 Cytochrome c biogenesi 98.5 1.9E-06 4E-11 79.1 12.3 103 317-434 155-260 (287)
124 CHL00033 ycf3 photosystem I as 98.5 5E-07 1.1E-11 78.3 7.7 98 324-434 5-105 (168)
125 PF06552 TOM20_plant: Plant sp 98.4 1.6E-06 3.4E-11 73.5 9.6 86 334-434 7-113 (186)
126 PRK10153 DNA-binding transcrip 98.4 7.7E-06 1.7E-10 83.1 16.0 116 319-435 340-487 (517)
127 cd00189 TPR Tetratricopeptide 98.4 1.5E-06 3.2E-11 65.9 8.2 66 369-434 2-67 (100)
128 KOG1125 TPR repeat-containing 98.4 3E-06 6.4E-11 83.4 11.9 67 368-434 431-497 (579)
129 KOG2002 TPR-containing nuclear 98.4 1.6E-06 3.5E-11 89.7 10.4 103 320-434 272-375 (1018)
130 PLN03088 SGT1, suppressor of 98.4 2.2E-06 4.7E-11 83.5 11.0 84 318-416 36-119 (356)
131 TIGR02795 tol_pal_ybgF tol-pal 98.4 2.3E-06 5E-11 69.0 9.3 67 368-434 3-72 (119)
132 COG5010 TadD Flp pilus assembl 98.4 2.4E-06 5.2E-11 76.5 9.7 99 322-435 70-168 (257)
133 KOG1310 WD40 repeat protein [G 98.4 8.2E-07 1.8E-11 86.1 7.1 108 312-434 368-478 (758)
134 PLN03098 LPA1 LOW PSII ACCUMUL 98.4 2.5E-06 5.4E-11 82.8 10.4 73 313-397 70-142 (453)
135 KOG1128 Uncharacterized conser 98.4 1.3E-06 2.9E-11 87.8 8.7 100 319-433 486-585 (777)
136 cd05804 StaR_like StaR_like; a 98.4 8.1E-06 1.8E-10 79.6 14.2 114 320-433 45-180 (355)
137 KOG1840 Kinesin light chain [C 98.3 7E-06 1.5E-10 82.2 13.1 110 315-431 280-397 (508)
138 cd05804 StaR_like StaR_like; a 98.3 7E-06 1.5E-10 80.1 12.8 100 318-432 114-217 (355)
139 PRK14574 hmsH outer membrane p 98.3 4.4E-06 9.5E-11 89.1 12.1 118 317-434 33-169 (822)
140 PF03704 BTAD: Bacterial trans 98.3 4.2E-05 9E-10 64.5 15.8 113 317-429 5-124 (146)
141 KOG1129 TPR repeat-containing 98.3 6.7E-06 1.4E-10 75.6 11.3 98 321-434 226-323 (478)
142 PF00515 TPR_1: Tetratricopept 98.3 1.2E-06 2.6E-11 53.9 4.3 34 401-434 1-34 (34)
143 KOG1840 Kinesin light chain [C 98.3 7.3E-06 1.6E-10 82.1 12.0 108 317-431 198-313 (508)
144 PRK02603 photosystem I assembl 98.3 5.2E-06 1.1E-10 72.2 9.4 69 366-434 34-105 (172)
145 KOG2076 RNA polymerase III tra 98.3 7.9E-06 1.7E-10 84.2 11.7 100 318-432 173-272 (895)
146 COG4783 Putative Zn-dependent 98.2 1.5E-05 3.3E-10 77.2 12.4 61 370-430 377-437 (484)
147 PF07719 TPR_2: Tetratricopept 98.2 3.2E-06 6.8E-11 51.8 5.0 34 401-434 1-34 (34)
148 COG4783 Putative Zn-dependent 98.2 1.6E-05 3.5E-10 77.0 12.1 105 316-435 304-408 (484)
149 PF13431 TPR_17: Tetratricopep 98.2 1.3E-06 2.9E-11 53.5 3.1 34 389-422 1-34 (34)
150 PF15015 NYD-SP12_N: Spermatog 98.2 2.2E-05 4.8E-10 74.5 12.6 113 315-427 173-288 (569)
151 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 1.2E-05 2.6E-10 78.4 10.8 91 323-428 205-295 (395)
152 KOG2002 TPR-containing nuclear 98.2 1.5E-05 3.2E-10 82.8 11.7 108 313-434 302-413 (1018)
153 COG2956 Predicted N-acetylgluc 98.2 2.2E-05 4.8E-10 72.2 11.5 117 317-433 106-246 (389)
154 PF13429 TPR_15: Tetratricopep 98.2 1E-05 2.2E-10 76.3 9.7 104 318-434 110-247 (280)
155 PF14938 SNAP: Soluble NSF att 98.1 2.9E-05 6.4E-10 73.2 11.7 110 315-433 111-228 (282)
156 PRK14574 hmsH outer membrane p 98.1 2.9E-05 6.3E-10 82.9 12.4 101 319-435 103-203 (822)
157 PF00515 TPR_1: Tetratricopept 98.1 5.7E-06 1.2E-10 50.8 4.2 33 368-400 2-34 (34)
158 PF09976 TPR_21: Tetratricopep 98.1 9.2E-05 2E-09 62.4 13.1 102 313-426 6-110 (145)
159 KOG1129 TPR repeat-containing 98.1 1.4E-05 3.1E-10 73.5 8.2 105 317-433 357-461 (478)
160 KOG1173 Anaphase-promoting com 98.1 1.5E-05 3.3E-10 78.2 8.9 96 324-434 386-488 (611)
161 KOG3060 Uncharacterized conser 98.1 5.6E-05 1.2E-09 67.4 11.3 114 321-434 89-224 (289)
162 PRK14720 transcript cleavage f 98.0 3.7E-05 8.1E-10 81.6 11.2 112 317-430 30-178 (906)
163 PF14938 SNAP: Soluble NSF att 98.0 5.5E-05 1.2E-09 71.3 11.4 105 317-431 74-185 (282)
164 PF12968 DUF3856: Domain of Un 98.0 0.00059 1.3E-08 53.6 14.8 108 320-430 11-129 (144)
165 KOG1130 Predicted G-alpha GTPa 98.0 1E-05 2.2E-10 76.5 6.0 109 313-430 190-304 (639)
166 PF13428 TPR_14: Tetratricopep 98.0 1.8E-05 3.9E-10 51.8 5.4 42 368-409 2-43 (44)
167 KOG3060 Uncharacterized conser 98.0 8.9E-05 1.9E-09 66.2 11.2 59 377-435 130-188 (289)
168 PRK11906 transcriptional regul 98.0 4.7E-05 1E-09 74.2 10.1 87 332-433 318-404 (458)
169 TIGR00540 hemY_coli hemY prote 98.0 6.5E-05 1.4E-09 74.9 11.3 114 316-430 261-399 (409)
170 PRK11906 transcriptional regul 98.0 0.00011 2.3E-09 71.8 12.2 90 333-434 273-371 (458)
171 TIGR00540 hemY_coli hemY prote 97.9 0.00018 4E-09 71.6 13.9 117 314-430 80-216 (409)
172 COG2956 Predicted N-acetylgluc 97.9 0.00016 3.5E-09 66.7 12.0 105 314-433 176-281 (389)
173 PRK14720 transcript cleavage f 97.9 9.7E-05 2.1E-09 78.6 11.5 54 366-434 149-202 (906)
174 PF12688 TPR_5: Tetratrico pep 97.9 0.00011 2.4E-09 59.4 9.3 66 368-433 2-70 (120)
175 PRK10747 putative protoheme IX 97.9 0.00012 2.6E-09 72.6 11.2 114 316-431 261-391 (398)
176 PF07719 TPR_2: Tetratricopept 97.8 3.9E-05 8.6E-10 46.8 4.9 33 368-400 2-34 (34)
177 PRK10747 putative protoheme IX 97.8 0.0002 4.4E-09 71.0 12.5 59 373-431 159-217 (398)
178 KOG4555 TPR repeat-containing 97.8 7.5E-05 1.6E-09 59.8 7.4 61 372-432 48-108 (175)
179 KOG4234 TPR repeat-containing 97.8 0.00011 2.3E-09 63.4 8.8 75 316-405 132-206 (271)
180 PRK10803 tol-pal system protei 97.8 0.00011 2.4E-09 68.1 9.7 68 368-435 143-214 (263)
181 KOG1156 N-terminal acetyltrans 97.8 8.4E-05 1.8E-09 74.3 9.2 101 319-434 8-108 (700)
182 PF12569 NARP1: NMDA receptor- 97.8 7.2E-05 1.6E-09 75.7 8.9 71 365-435 192-262 (517)
183 KOG1130 Predicted G-alpha GTPa 97.8 0.00015 3.3E-09 68.8 10.3 109 314-431 231-345 (639)
184 COG4105 ComL DNA uptake lipopr 97.8 0.00055 1.2E-08 61.8 13.3 107 317-435 33-150 (254)
185 PF13181 TPR_8: Tetratricopept 97.8 3.9E-05 8.5E-10 46.9 4.2 33 402-434 2-34 (34)
186 COG4235 Cytochrome c biogenesi 97.8 0.00023 5.1E-09 65.5 10.5 87 333-434 137-226 (287)
187 COG4785 NlpI Lipoprotein NlpI, 97.7 9.1E-05 2E-09 64.6 6.9 71 364-434 62-132 (297)
188 PF12895 Apc3: Anaphase-promot 97.7 9E-05 2E-09 56.0 6.2 61 317-393 24-84 (84)
189 KOG4648 Uncharacterized conser 97.7 4.1E-05 8.8E-10 71.0 4.8 63 370-432 100-162 (536)
190 PF13525 YfiO: Outer membrane 97.7 0.00083 1.8E-08 60.0 12.5 105 318-434 42-174 (203)
191 PRK15331 chaperone protein Sic 97.7 0.00034 7.3E-09 59.0 9.2 69 367-435 37-105 (165)
192 COG4700 Uncharacterized protei 97.6 0.00085 1.8E-08 57.3 11.3 102 318-433 89-192 (251)
193 KOG1174 Anaphase-promoting com 97.6 0.00038 8.2E-09 66.3 10.1 116 318-433 232-366 (564)
194 PRK10866 outer membrane biogen 97.6 0.00034 7.3E-09 64.3 9.8 68 368-435 33-103 (243)
195 KOG2003 TPR repeat-containing 97.6 0.00045 9.7E-09 66.4 10.3 120 315-434 555-693 (840)
196 KOG1128 Uncharacterized conser 97.6 0.0003 6.6E-09 71.4 9.5 120 315-435 421-553 (777)
197 PF13512 TPR_18: Tetratricopep 97.6 0.00069 1.5E-08 55.8 9.8 68 368-435 11-81 (142)
198 PF13428 TPR_14: Tetratricopep 97.6 0.00012 2.6E-09 47.8 4.2 35 401-435 1-35 (44)
199 KOG4814 Uncharacterized conser 97.6 0.0009 2E-08 66.9 12.0 103 319-430 355-457 (872)
200 TIGR00115 tig trigger factor. 97.6 0.00048 1E-08 68.6 10.2 77 215-303 156-232 (408)
201 KOG4151 Myosin assembly protei 97.5 0.00021 4.6E-09 73.3 7.6 114 310-434 45-160 (748)
202 PF04733 Coatomer_E: Coatomer 97.5 0.00033 7.1E-09 66.1 7.6 87 333-434 182-269 (290)
203 KOG4162 Predicted calmodulin-b 97.5 0.00084 1.8E-08 68.6 10.7 103 318-435 650-754 (799)
204 KOG4642 Chaperone-dependent E3 97.5 9.9E-05 2.1E-09 65.2 3.6 63 371-433 14-76 (284)
205 PF13181 TPR_8: Tetratricopept 97.4 0.00024 5.2E-09 43.3 4.1 33 368-400 2-34 (34)
206 KOG2796 Uncharacterized conser 97.4 0.001 2.2E-08 59.9 9.3 115 320-434 179-319 (366)
207 PRK10941 hypothetical protein; 97.4 0.0011 2.4E-08 61.4 10.0 72 364-435 178-249 (269)
208 KOG1156 N-terminal acetyltrans 97.4 0.00056 1.2E-08 68.6 8.4 91 323-428 80-170 (700)
209 KOG3785 Uncharacterized conser 97.4 0.00053 1.1E-08 64.1 7.6 88 326-427 30-117 (557)
210 PF14853 Fis1_TPR_C: Fis1 C-te 97.4 0.00085 1.8E-08 45.4 6.7 43 368-410 2-44 (53)
211 PF04733 Coatomer_E: Coatomer 97.4 0.00093 2E-08 63.0 9.2 94 324-434 137-234 (290)
212 KOG1127 TPR repeat-containing 97.4 0.0014 3.1E-08 68.7 11.0 99 320-433 4-106 (1238)
213 PRK01490 tig trigger factor; P 97.3 0.0013 2.7E-08 66.2 10.2 77 215-303 167-243 (435)
214 KOG4340 Uncharacterized conser 97.3 0.00067 1.5E-08 62.0 7.2 93 317-424 143-264 (459)
215 KOG4507 Uncharacterized conser 97.3 0.00037 8E-09 69.0 5.6 97 325-435 614-710 (886)
216 PF09295 ChAPs: ChAPs (Chs5p-A 97.3 0.0026 5.7E-08 62.2 11.2 87 330-434 181-267 (395)
217 COG2976 Uncharacterized protei 97.2 0.0049 1.1E-07 53.2 10.8 101 320-433 91-191 (207)
218 PF14853 Fis1_TPR_C: Fis1 C-te 97.2 0.0008 1.7E-08 45.5 4.8 34 402-435 2-35 (53)
219 KOG0495 HAT repeat protein [RN 97.2 0.0025 5.4E-08 64.2 10.1 92 328-434 661-752 (913)
220 KOG1941 Acetylcholine receptor 97.2 0.0031 6.7E-08 59.3 10.0 118 316-433 4-154 (518)
221 COG1729 Uncharacterized protei 97.2 0.002 4.3E-08 58.7 8.5 66 370-435 144-212 (262)
222 KOG1127 TPR repeat-containing 97.2 0.0011 2.4E-08 69.6 7.5 94 321-429 565-658 (1238)
223 PF13174 TPR_6: Tetratricopept 97.1 0.001 2.3E-08 40.0 4.6 31 403-433 2-32 (33)
224 KOG1174 Anaphase-promoting com 97.1 0.0026 5.6E-08 60.8 9.1 99 320-433 336-436 (564)
225 KOG0495 HAT repeat protein [RN 97.1 0.0036 7.8E-08 63.1 10.3 116 319-434 585-718 (913)
226 KOG0551 Hsp90 co-chaperone CNS 97.1 0.0025 5.5E-08 59.2 8.3 68 367-434 81-152 (390)
227 smart00028 TPR Tetratricopepti 97.0 0.0011 2.3E-08 39.0 4.0 32 402-433 2-33 (34)
228 KOG1941 Acetylcholine receptor 97.0 0.0022 4.8E-08 60.3 7.5 103 320-431 124-236 (518)
229 PF13431 TPR_17: Tetratricopep 97.0 0.00054 1.2E-08 41.9 2.4 34 340-388 1-34 (34)
230 PF13176 TPR_7: Tetratricopept 97.0 0.00092 2E-08 41.4 3.4 26 370-395 2-27 (36)
231 COG0544 Tig FKBP-type peptidyl 97.0 0.0046 1E-07 61.4 9.7 69 222-303 173-243 (441)
232 PF13176 TPR_7: Tetratricopept 96.9 0.0016 3.5E-08 40.3 4.0 28 403-430 1-28 (36)
233 PF12569 NARP1: NMDA receptor- 96.9 0.0065 1.4E-07 61.8 10.3 95 320-429 196-290 (517)
234 KOG3785 Uncharacterized conser 96.9 0.0029 6.3E-08 59.3 7.0 53 324-391 63-115 (557)
235 KOG2376 Signal recognition par 96.9 0.013 2.8E-07 58.6 11.7 110 319-431 13-140 (652)
236 COG4105 ComL DNA uptake lipopr 96.9 0.0082 1.8E-07 54.3 9.5 69 367-435 34-105 (254)
237 KOG1586 Protein required for f 96.9 0.018 4E-07 51.1 11.3 100 326-434 81-187 (288)
238 PRK10153 DNA-binding transcrip 96.8 0.0059 1.3E-07 62.4 9.5 68 320-403 422-489 (517)
239 KOG1586 Protein required for f 96.8 0.021 4.5E-07 50.8 11.3 107 319-434 114-228 (288)
240 KOG3824 Huntingtin interacting 96.8 0.0042 9.1E-08 57.2 7.2 84 313-411 111-194 (472)
241 KOG0376 Serine-threonine phosp 96.8 0.0011 2.4E-08 64.6 3.7 65 370-434 7-71 (476)
242 PF10300 DUF3808: Protein of u 96.8 0.0096 2.1E-07 60.2 10.5 99 320-430 269-376 (468)
243 PF13174 TPR_6: Tetratricopept 96.8 0.0025 5.4E-08 38.2 4.0 32 369-400 2-33 (33)
244 COG4976 Predicted methyltransf 96.7 0.0022 4.8E-08 56.6 4.8 59 376-434 4-62 (287)
245 PF09986 DUF2225: Uncharacteri 96.7 0.024 5.2E-07 50.9 11.5 97 327-431 86-195 (214)
246 COG0457 NrfG FOG: TPR repeat [ 96.7 0.034 7.4E-07 48.7 12.8 94 327-432 139-233 (291)
247 KOG3824 Huntingtin interacting 96.6 0.0069 1.5E-07 55.8 7.2 67 368-434 117-183 (472)
248 PF06552 TOM20_plant: Plant sp 96.6 0.015 3.2E-07 49.8 8.5 57 332-403 49-116 (186)
249 smart00028 TPR Tetratricopepti 96.6 0.0043 9.3E-08 36.2 4.1 33 368-400 2-34 (34)
250 KOG3364 Membrane protein invol 96.6 0.012 2.6E-07 47.6 7.4 69 367-435 32-105 (149)
251 KOG3081 Vesicle coat complex C 96.5 0.02 4.4E-07 51.8 9.6 65 370-434 172-240 (299)
252 COG3071 HemY Uncharacterized e 96.5 0.021 4.5E-07 54.5 10.0 114 316-430 261-390 (400)
253 COG0457 NrfG FOG: TPR repeat [ 96.5 0.043 9.4E-07 48.1 11.9 101 318-433 95-199 (291)
254 COG3118 Thioredoxin domain-con 96.5 0.056 1.2E-06 49.9 12.2 99 319-432 135-267 (304)
255 PF04781 DUF627: Protein of un 96.5 0.061 1.3E-06 42.2 10.7 103 324-431 2-108 (111)
256 PRK04841 transcriptional regul 96.4 0.043 9.3E-07 60.6 13.8 64 368-431 532-603 (903)
257 PF10602 RPN7: 26S proteasome 96.4 0.071 1.5E-06 46.4 11.8 102 315-428 33-140 (177)
258 COG3071 HemY Uncharacterized e 96.2 0.096 2.1E-06 50.1 12.6 116 312-427 78-213 (400)
259 PRK04841 transcriptional regul 96.2 0.07 1.5E-06 59.0 13.8 99 322-430 456-560 (903)
260 KOG2376 Signal recognition par 96.1 0.033 7.2E-07 55.7 9.4 85 317-401 174-258 (652)
261 KOG4340 Uncharacterized conser 96.1 0.027 5.8E-07 51.8 8.0 85 328-427 20-104 (459)
262 PF10952 DUF2753: Protein of u 96.0 0.086 1.9E-06 41.9 9.1 82 320-401 3-88 (140)
263 PLN03081 pentatricopeptide (PP 95.9 0.052 1.1E-06 58.1 10.5 63 368-430 495-557 (697)
264 PF08631 SPO22: Meiosis protei 95.9 0.23 5.1E-06 46.6 13.7 121 308-430 25-150 (278)
265 KOG1585 Protein required for f 95.8 0.29 6.4E-06 44.0 12.9 104 318-430 31-139 (308)
266 COG3947 Response regulator con 95.7 0.12 2.7E-06 47.5 10.4 74 354-427 266-339 (361)
267 COG2912 Uncharacterized conser 95.7 0.047 1E-06 50.0 7.7 71 365-435 179-249 (269)
268 PF04184 ST7: ST7 protein; In 95.6 0.18 4E-06 49.9 11.9 102 320-434 261-379 (539)
269 PF14561 TPR_20: Tetratricopep 95.6 0.045 9.7E-07 41.8 6.2 49 386-434 7-55 (90)
270 KOG2471 TPR repeat-containing 95.5 0.032 7E-07 54.6 6.5 109 320-434 242-368 (696)
271 PF13374 TPR_10: Tetratricopep 95.5 0.029 6.3E-07 35.5 4.4 29 368-396 3-31 (42)
272 KOG2471 TPR repeat-containing 95.5 0.017 3.8E-07 56.4 4.7 99 316-414 281-382 (696)
273 PF02259 FAT: FAT domain; Int 95.5 0.29 6.3E-06 47.3 13.4 116 318-433 184-341 (352)
274 PF10579 Rapsyn_N: Rapsyn N-te 95.4 0.19 4.2E-06 36.7 8.6 69 316-396 4-72 (80)
275 COG3629 DnrI DNA-binding trans 95.4 0.3 6.6E-06 45.4 12.0 74 357-430 143-216 (280)
276 PF04184 ST7: ST7 protein; In 95.4 0.16 3.6E-06 50.2 10.7 118 310-427 183-321 (539)
277 KOG1308 Hsp70-interacting prot 95.4 0.0056 1.2E-07 57.3 0.7 58 377-434 124-181 (377)
278 PLN03218 maturation of RBCL 1; 95.3 0.3 6.5E-06 54.4 13.7 62 369-430 581-643 (1060)
279 PRK10941 hypothetical protein; 95.3 0.18 3.9E-06 46.8 10.3 79 318-411 181-259 (269)
280 PF05843 Suf: Suppressor of fo 95.2 0.11 2.4E-06 48.8 9.2 94 324-432 7-101 (280)
281 PF03704 BTAD: Bacterial trans 95.2 0.14 3.1E-06 42.7 9.0 65 316-395 60-124 (146)
282 KOG1915 Cell cycle control pro 95.2 0.17 3.6E-06 49.7 10.0 97 318-430 404-500 (677)
283 PF06957 COPI_C: Coatomer (COP 95.1 0.15 3.2E-06 50.2 9.6 121 314-434 200-333 (422)
284 COG4700 Uncharacterized protei 95.1 0.63 1.4E-05 40.2 12.1 94 320-427 126-219 (251)
285 KOG3081 Vesicle coat complex C 95.1 0.31 6.6E-06 44.5 10.7 88 332-434 187-275 (299)
286 KOG2396 HAT (Half-A-TPR) repea 95.0 0.2 4.3E-06 49.5 10.0 85 336-435 89-174 (568)
287 PLN03218 maturation of RBCL 1; 95.0 0.42 9.2E-06 53.2 13.8 110 319-429 615-747 (1060)
288 PF12862 Apc5: Anaphase-promot 94.9 0.21 4.5E-06 38.4 8.3 65 327-397 7-71 (94)
289 KOG2053 Mitochondrial inherita 94.9 0.14 3.1E-06 53.8 9.4 90 329-433 20-109 (932)
290 KOG1915 Cell cycle control pro 94.9 0.31 6.6E-06 47.9 10.9 98 321-433 76-173 (677)
291 PF13374 TPR_10: Tetratricopep 94.9 0.064 1.4E-06 33.8 4.6 30 401-430 2-31 (42)
292 KOG3364 Membrane protein invol 94.9 0.29 6.3E-06 39.8 9.0 78 321-411 35-115 (149)
293 PLN03077 Protein ECB2; Provisi 94.7 0.32 7E-06 53.4 12.3 60 370-429 660-719 (857)
294 PLN03081 pentatricopeptide (PP 94.7 0.32 6.9E-06 52.1 12.0 115 318-434 391-527 (697)
295 PF10516 SHNi-TPR: SHNi-TPR; 94.5 0.072 1.6E-06 33.2 3.9 30 402-431 2-31 (38)
296 COG4976 Predicted methyltransf 94.3 0.058 1.3E-06 47.9 4.2 61 326-401 3-63 (287)
297 PF12862 Apc5: Anaphase-promot 94.2 0.26 5.6E-06 37.9 7.3 56 376-431 7-71 (94)
298 KOG1585 Protein required for f 94.2 0.52 1.1E-05 42.4 9.9 99 324-431 116-220 (308)
299 KOG2610 Uncharacterized conser 94.1 0.3 6.5E-06 45.9 8.6 108 319-426 104-234 (491)
300 PLN03077 Protein ECB2; Provisi 94.1 0.59 1.3E-05 51.4 12.7 115 318-434 554-690 (857)
301 KOG2610 Uncharacterized conser 94.0 0.43 9.3E-06 44.9 9.3 59 376-434 146-208 (491)
302 KOG1070 rRNA processing protei 93.8 0.7 1.5E-05 51.2 11.8 66 368-433 1531-1596(1710)
303 PF05843 Suf: Suppressor of fo 93.8 0.65 1.4E-05 43.7 10.6 99 321-434 38-140 (280)
304 KOG4814 Uncharacterized conser 93.8 0.31 6.6E-06 49.6 8.5 68 367-434 354-427 (872)
305 PF07720 TPR_3: Tetratricopept 93.7 0.24 5.1E-06 30.5 5.0 33 402-434 2-36 (36)
306 PF07079 DUF1347: Protein of u 93.7 1.4 3E-05 43.4 12.4 113 313-426 374-520 (549)
307 PF10300 DUF3808: Protein of u 93.6 0.3 6.5E-06 49.5 8.5 86 331-431 246-335 (468)
308 KOG2053 Mitochondrial inherita 93.5 0.57 1.2E-05 49.5 10.1 96 324-435 49-144 (932)
309 KOG2796 Uncharacterized conser 93.4 0.94 2E-05 41.3 10.1 72 364-435 209-286 (366)
310 PRK13184 pknD serine/threonine 93.2 0.42 9E-06 52.1 9.1 99 324-435 481-586 (932)
311 KOG0686 COP9 signalosome, subu 92.9 0.72 1.6E-05 44.6 9.1 97 319-427 151-255 (466)
312 KOG2300 Uncharacterized conser 92.7 2.7 5.9E-05 41.7 12.8 99 317-431 366-475 (629)
313 COG2976 Uncharacterized protei 92.7 1.8 3.9E-05 37.7 10.5 96 332-427 48-152 (207)
314 PF09613 HrpB1_HrpK: Bacterial 92.6 2.2 4.7E-05 36.1 10.7 86 317-417 9-94 (160)
315 cd02681 MIT_calpain7_1 MIT: do 92.1 1.8 3.9E-05 31.7 8.5 36 315-350 3-38 (76)
316 KOG2300 Uncharacterized conser 91.9 3.1 6.8E-05 41.3 12.2 101 316-424 44-150 (629)
317 PF02259 FAT: FAT domain; Int 91.9 2.3 5E-05 41.0 11.9 108 316-434 144-291 (352)
318 KOG4507 Uncharacterized conser 91.7 0.4 8.7E-06 48.3 6.1 93 328-433 223-315 (886)
319 PF12968 DUF3856: Domain of Un 91.7 2.8 6.1E-05 33.4 9.6 75 318-396 55-129 (144)
320 PF10516 SHNi-TPR: SHNi-TPR; 91.6 0.3 6.5E-06 30.5 3.4 30 368-397 2-31 (38)
321 PF07721 TPR_4: Tetratricopept 91.6 0.26 5.6E-06 27.8 2.9 24 402-425 2-25 (26)
322 KOG1070 rRNA processing protei 91.5 2 4.4E-05 47.8 11.5 98 320-432 1532-1631(1710)
323 PF14561 TPR_20: Tetratricopep 91.5 2 4.3E-05 32.7 8.5 75 337-426 7-83 (90)
324 COG5191 Uncharacterized conser 91.3 0.27 5.9E-06 45.7 4.3 68 368-435 108-176 (435)
325 PF11817 Foie-gras_1: Foie gra 91.1 1.8 3.8E-05 39.9 9.5 63 323-394 183-245 (247)
326 cd02682 MIT_AAA_Arch MIT: doma 90.9 1.9 4.2E-05 31.4 7.5 36 315-350 3-38 (75)
327 COG3898 Uncharacterized membra 90.5 4.1 8.9E-05 39.4 11.3 98 328-433 198-295 (531)
328 PF08631 SPO22: Meiosis protei 90.4 3.5 7.5E-05 38.7 11.0 87 328-422 3-105 (278)
329 PF04910 Tcf25: Transcriptiona 90.2 3.3 7.2E-05 40.4 11.0 69 367-435 40-138 (360)
330 PF10579 Rapsyn_N: Rapsyn N-te 90.2 3.9 8.5E-05 30.0 8.5 61 370-430 9-72 (80)
331 KOG1550 Extracellular protein 90.1 2.3 5E-05 44.1 10.4 92 321-431 291-394 (552)
332 KOG0292 Vesicle coat complex C 90.0 1.8 3.9E-05 45.9 9.1 119 315-433 988-1116(1202)
333 PF09670 Cas_Cas02710: CRISPR- 89.7 4.9 0.00011 39.5 11.8 101 317-430 130-270 (379)
334 COG2912 Uncharacterized conser 89.5 2.3 5E-05 39.1 8.6 75 322-411 185-259 (269)
335 PF13281 DUF4071: Domain of un 89.4 7.7 0.00017 37.8 12.5 100 320-433 181-337 (374)
336 COG3898 Uncharacterized membra 89.2 8.8 0.00019 37.2 12.4 95 320-429 122-216 (531)
337 PF04212 MIT: MIT (microtubule 89.2 2.1 4.6E-05 30.6 6.7 35 315-349 2-36 (69)
338 cd02683 MIT_1 MIT: domain cont 89.2 3.8 8.2E-05 30.1 8.0 35 316-350 4-38 (77)
339 cd02677 MIT_SNX15 MIT: domain 89.0 3.3 7.1E-05 30.3 7.5 60 315-374 3-63 (75)
340 cd02678 MIT_VPS4 MIT: domain c 88.9 3.9 8.5E-05 29.8 8.0 35 315-349 3-37 (75)
341 cd02684 MIT_2 MIT: domain cont 88.7 2.9 6.3E-05 30.6 7.1 35 315-349 3-37 (75)
342 PF10602 RPN7: 26S proteasome 88.4 3.8 8.3E-05 35.5 9.0 65 366-430 35-102 (177)
343 cd02679 MIT_spastin MIT: domai 88.3 7.3 0.00016 28.8 9.0 67 314-380 4-76 (79)
344 PF09986 DUF2225: Uncharacteri 87.8 4.6 0.0001 36.2 9.4 68 334-410 141-209 (214)
345 KOG3617 WD40 and TPR repeat-co 87.7 3.5 7.7E-05 43.6 9.4 104 326-429 808-940 (1416)
346 PF04910 Tcf25: Transcriptiona 87.6 7.6 0.00016 37.9 11.4 105 314-432 99-224 (360)
347 PF10345 Cohesin_load: Cohesin 87.4 6.2 0.00013 41.6 11.5 108 319-426 302-429 (608)
348 KOG3617 WD40 and TPR repeat-co 87.2 3.1 6.8E-05 43.9 8.7 112 316-430 856-996 (1416)
349 COG3914 Spy Predicted O-linked 87.0 6.6 0.00014 40.0 10.6 96 324-434 73-175 (620)
350 cd02680 MIT_calpain7_2 MIT: do 86.9 6.9 0.00015 28.5 8.1 36 315-350 3-38 (75)
351 TIGR02561 HrpB1_HrpK type III 86.9 14 0.0003 30.9 10.7 84 319-417 11-94 (153)
352 TIGR03504 FimV_Cterm FimV C-te 86.8 1.2 2.6E-05 28.8 3.6 25 405-429 3-27 (44)
353 PF07720 TPR_3: Tetratricopept 86.7 2.4 5.2E-05 26.0 4.8 31 370-400 4-36 (36)
354 cd02656 MIT MIT: domain contai 86.2 5.9 0.00013 28.8 7.6 36 315-350 3-38 (75)
355 PF11817 Foie-gras_1: Foie gra 86.1 9.6 0.00021 35.0 10.8 85 335-428 155-245 (247)
356 PF14863 Alkyl_sulf_dimr: Alky 85.9 3 6.4E-05 34.7 6.5 52 368-419 71-122 (141)
357 PF07721 TPR_4: Tetratricopept 85.7 1 2.2E-05 25.3 2.6 24 368-391 2-25 (26)
358 PF13281 DUF4071: Domain of un 85.6 11 0.00023 36.8 11.1 65 369-433 181-258 (374)
359 COG0790 FOG: TPR repeat, SEL1 85.6 14 0.00031 34.6 12.1 96 320-431 111-221 (292)
360 PF10373 EST1_DNA_bind: Est1 D 85.4 4 8.7E-05 37.9 8.1 62 337-413 1-62 (278)
361 PF09613 HrpB1_HrpK: Bacterial 85.4 4.7 0.0001 34.1 7.5 67 367-433 10-76 (160)
362 KOG0739 AAA+-type ATPase [Post 84.9 5.1 0.00011 37.5 8.0 37 312-348 4-40 (439)
363 PF11207 DUF2989: Protein of u 84.5 7.1 0.00015 34.4 8.4 54 368-422 142-199 (203)
364 smart00745 MIT Microtubule Int 84.4 13 0.00028 27.1 8.8 37 314-350 4-40 (77)
365 KOG0530 Protein farnesyltransf 84.2 9.4 0.0002 35.1 9.2 91 328-433 53-145 (318)
366 COG3118 Thioredoxin domain-con 83.8 3.7 8.1E-05 38.2 6.7 55 372-426 139-193 (304)
367 PF10345 Cohesin_load: Cohesin 83.7 24 0.00053 37.2 13.8 106 316-431 57-169 (608)
368 KOG2422 Uncharacterized conser 83.1 29 0.00063 35.5 12.9 88 313-401 286-377 (665)
369 PF10255 Paf67: RNA polymerase 82.8 2.4 5.3E-05 41.7 5.4 59 370-429 125-192 (404)
370 KOG1550 Extracellular protein 82.5 13 0.00028 38.7 11.0 100 318-429 244-356 (552)
371 COG2909 MalT ATP-dependent tra 82.3 33 0.00071 37.0 13.6 110 315-430 412-526 (894)
372 KOG1839 Uncharacterized protei 82.1 6.5 0.00014 43.7 8.8 108 317-431 972-1087(1236)
373 cd02682 MIT_AAA_Arch MIT: doma 81.0 11 0.00025 27.4 7.1 42 370-411 9-57 (75)
374 KOG2041 WD40 repeat protein [G 80.6 8.6 0.00019 40.0 8.4 85 329-426 771-877 (1189)
375 PF08424 NRDE-2: NRDE-2, neces 80.5 15 0.00032 35.2 10.0 52 383-434 47-98 (321)
376 KOG0529 Protein geranylgeranyl 80.3 33 0.00072 33.6 11.9 99 328-434 38-144 (421)
377 PF09205 DUF1955: Domain of un 80.3 15 0.00033 30.1 8.2 60 370-429 88-148 (161)
378 PRK15180 Vi polysaccharide bio 80.1 14 0.0003 36.9 9.4 27 326-352 297-323 (831)
379 TIGR03504 FimV_Cterm FimV C-te 79.4 3.5 7.6E-05 26.6 3.6 27 370-396 2-28 (44)
380 PF04781 DUF627: Protein of un 79.3 8.8 0.00019 30.3 6.4 61 373-433 2-76 (111)
381 KOG2047 mRNA splicing factor [ 79.1 17 0.00036 37.7 9.8 105 315-429 508-614 (835)
382 PF07079 DUF1347: Protein of u 78.8 13 0.00029 36.8 8.8 60 317-392 461-520 (549)
383 COG3629 DnrI DNA-binding trans 78.7 12 0.00027 34.9 8.4 66 316-396 151-216 (280)
384 PF11846 DUF3366: Domain of un 78.3 8.2 0.00018 33.9 7.0 51 383-434 127-177 (193)
385 PF11207 DUF2989: Protein of u 78.2 7.1 0.00015 34.4 6.2 60 317-388 140-199 (203)
386 KOG2047 mRNA splicing factor [ 77.3 30 0.00064 36.0 11.0 114 316-430 423-540 (835)
387 COG4455 ImpE Protein of avirul 77.3 8.1 0.00018 34.5 6.3 59 376-434 10-68 (273)
388 COG0790 FOG: TPR repeat, SEL1 77.1 16 0.00034 34.3 9.0 78 335-432 172-268 (292)
389 TIGR02710 CRISPR-associated pr 75.7 56 0.0012 32.0 12.2 63 319-391 131-195 (380)
390 COG2909 MalT ATP-dependent tra 75.2 40 0.00086 36.4 11.7 84 323-416 463-552 (894)
391 KOG1839 Uncharacterized protei 75.1 5.8 0.00013 44.1 5.9 108 316-431 930-1045(1236)
392 PHA02537 M terminase endonucle 75.0 25 0.00054 31.8 9.0 103 328-433 93-210 (230)
393 KOG2581 26S proteasome regulat 74.3 38 0.00082 33.2 10.3 67 368-434 210-280 (493)
394 PF12739 TRAPPC-Trs85: ER-Golg 73.9 47 0.001 33.2 11.7 103 319-430 209-329 (414)
395 KOG2561 Adaptor protein NUB1, 73.3 50 0.0011 32.7 11.0 114 312-429 157-295 (568)
396 PF07163 Pex26: Pex26 protein; 73.2 56 0.0012 30.5 10.8 114 319-434 36-150 (309)
397 PRK15180 Vi polysaccharide bio 73.0 11 0.00024 37.5 6.6 62 372-433 362-423 (831)
398 COG5159 RPN6 26S proteasome re 72.6 67 0.0014 30.1 11.1 71 360-430 118-194 (421)
399 COG3914 Spy Predicted O-linked 71.7 17 0.00036 37.2 7.7 85 337-434 50-135 (620)
400 KOG0546 HSP90 co-chaperone CPR 71.6 2.9 6.3E-05 39.8 2.3 80 324-418 281-360 (372)
401 PF08424 NRDE-2: NRDE-2, neces 70.2 60 0.0013 31.1 11.1 82 334-430 47-131 (321)
402 PF08311 Mad3_BUB1_I: Mad3/BUB 69.9 58 0.0012 26.4 10.3 85 332-428 40-126 (126)
403 KOG1464 COP9 signalosome, subu 69.6 14 0.00031 34.0 6.2 51 379-429 39-93 (440)
404 smart00386 HAT HAT (Half-A-TPR 68.8 14 0.00031 20.9 4.4 29 381-409 1-29 (33)
405 KOG1463 26S proteasome regulat 68.3 32 0.00069 32.9 8.3 101 323-432 214-318 (411)
406 TIGR02561 HrpB1_HrpK type III 67.0 35 0.00075 28.6 7.4 65 368-432 11-75 (153)
407 PF10255 Paf67: RNA polymerase 67.0 16 0.00034 36.1 6.4 68 322-396 126-193 (404)
408 PF01239 PPTA: Protein prenylt 66.6 21 0.00045 20.7 4.6 29 386-414 2-30 (31)
409 cd02683 MIT_1 MIT: domain cont 66.2 44 0.00096 24.5 7.2 20 383-402 29-48 (77)
410 PRK13184 pknD serine/threonine 65.9 32 0.00069 38.0 9.0 63 370-434 555-624 (932)
411 PF04190 DUF410: Protein of un 65.0 91 0.002 28.8 10.9 100 316-425 8-114 (260)
412 cd02680 MIT_calpain7_2 MIT: do 64.9 15 0.00033 26.8 4.4 29 368-396 7-35 (75)
413 PF10952 DUF2753: Protein of u 64.3 32 0.0007 27.7 6.4 59 370-428 4-77 (140)
414 COG1747 Uncharacterized N-term 64.0 1.2E+02 0.0027 30.8 11.7 119 315-434 129-292 (711)
415 KOG0529 Protein geranylgeranyl 63.7 49 0.0011 32.5 8.8 90 330-434 87-182 (421)
416 PF10938 YfdX: YfdX protein; 62.9 55 0.0012 27.7 8.2 73 315-395 72-145 (155)
417 KOG1310 WD40 repeat protein [G 62.4 13 0.00028 37.6 4.8 66 320-400 410-478 (758)
418 KOG3783 Uncharacterized conser 62.1 42 0.00092 34.1 8.3 62 370-431 452-521 (546)
419 PF12854 PPR_1: PPR repeat 62.0 21 0.00046 21.3 4.1 27 400-426 6-32 (34)
420 COG4941 Predicted RNA polymera 61.8 48 0.001 31.7 8.1 64 370-433 332-397 (415)
421 COG4455 ImpE Protein of avirul 61.6 75 0.0016 28.6 8.8 63 324-401 7-69 (273)
422 PF08238 Sel1: Sel1 repeat; I 61.1 24 0.00051 21.3 4.4 29 402-430 2-37 (39)
423 PF04053 Coatomer_WDAD: Coatom 60.9 49 0.0011 33.3 8.8 25 320-344 349-373 (443)
424 KOG2422 Uncharacterized conser 60.4 1.1E+02 0.0024 31.5 10.9 111 322-435 239-377 (665)
425 PF15469 Sec5: Exocyst complex 60.4 95 0.0021 26.8 9.6 26 326-351 94-119 (182)
426 COG3947 Response regulator con 60.1 38 0.00083 31.7 7.1 74 305-393 264-339 (361)
427 PF14863 Alkyl_sulf_dimr: Alky 59.6 55 0.0012 27.2 7.5 49 318-374 70-118 (141)
428 KOG0985 Vesicle coat protein c 59.2 36 0.00078 37.4 7.6 88 321-431 1197-1309(1666)
429 KOG2396 HAT (Half-A-TPR) repea 59.0 59 0.0013 32.8 8.6 60 330-404 117-177 (568)
430 PF04053 Coatomer_WDAD: Coatom 58.9 40 0.00086 34.0 7.8 32 398-429 344-375 (443)
431 PF01535 PPR: PPR repeat; Int 58.6 17 0.00036 20.5 3.2 26 370-395 3-28 (31)
432 PF00244 14-3-3: 14-3-3 protei 58.4 36 0.00078 31.0 6.8 56 334-396 142-198 (236)
433 PF07219 HemY_N: HemY protein 58.1 74 0.0016 24.9 7.8 54 363-416 55-108 (108)
434 PF08969 USP8_dimer: USP8 dime 57.6 44 0.00096 26.5 6.5 43 306-348 26-68 (115)
435 PF04212 MIT: MIT (microtubule 57.0 27 0.00059 24.7 4.7 27 370-396 8-34 (69)
436 smart00671 SEL1 Sel1-like repe 56.9 26 0.00057 20.5 4.0 27 403-429 3-33 (36)
437 KOG1464 COP9 signalosome, subu 56.1 38 0.00083 31.3 6.3 104 324-430 151-260 (440)
438 KOG2114 Vacuolar assembly/sort 55.9 70 0.0015 34.4 9.0 33 317-349 367-399 (933)
439 COG5191 Uncharacterized conser 55.5 30 0.00064 32.7 5.6 71 319-404 108-179 (435)
440 KOG3783 Uncharacterized conser 54.9 1.4E+02 0.003 30.6 10.5 78 321-412 270-349 (546)
441 cd02679 MIT_spastin MIT: domai 54.4 25 0.00054 25.9 4.1 27 370-396 11-37 (79)
442 cd02677 MIT_SNX15 MIT: domain 53.7 21 0.00047 26.0 3.7 29 368-396 7-35 (75)
443 KOG1258 mRNA processing protei 53.1 2E+02 0.0043 29.8 11.4 105 317-421 296-420 (577)
444 PF02064 MAS20: MAS20 protein 52.3 45 0.00098 26.9 5.6 40 311-350 56-95 (121)
445 PF13812 PPR_3: Pentatricopept 51.7 39 0.00085 19.4 4.1 27 369-395 3-29 (34)
446 COG4649 Uncharacterized protei 51.6 1.6E+02 0.0035 25.5 10.3 99 320-429 96-195 (221)
447 PF09797 NatB_MDM20: N-acetylt 51.5 78 0.0017 30.9 8.4 47 380-426 196-242 (365)
448 cd02681 MIT_calpain7_1 MIT: do 51.1 95 0.0021 22.7 7.1 27 370-396 9-35 (76)
449 KOG3540 Beta amyloid precursor 50.5 1.8E+02 0.0039 29.2 10.2 88 338-433 291-380 (615)
450 PF07219 HemY_N: HemY protein 49.5 72 0.0016 25.0 6.4 36 312-347 53-88 (108)
451 TIGR00756 PPR pentatricopeptid 49.4 38 0.00082 19.3 3.8 26 370-395 3-28 (35)
452 KOG4563 Cell cycle-regulated h 48.7 1.1E+02 0.0024 29.6 8.4 70 313-389 36-105 (400)
453 PF02184 HAT: HAT (Half-A-TPR) 48.4 41 0.00089 20.0 3.5 27 382-409 2-28 (32)
454 PF15015 NYD-SP12_N: Spermatog 48.3 28 0.0006 34.3 4.4 57 323-394 233-289 (569)
455 COG5091 SGT1 Suppressor of G2 48.2 42 0.00092 30.9 5.3 101 327-432 4-110 (368)
456 KOG2758 Translation initiation 47.8 92 0.002 29.7 7.5 65 366-430 128-196 (432)
457 KOG2709 Uncharacterized conser 47.4 84 0.0018 30.9 7.4 27 370-396 25-51 (560)
458 cd02678 MIT_VPS4 MIT: domain c 47.0 1E+02 0.0022 22.2 6.4 18 383-400 29-46 (75)
459 KOG4563 Cell cycle-regulated h 45.0 64 0.0014 31.2 6.2 56 368-423 42-105 (400)
460 KOG0985 Vesicle coat protein c 44.9 2E+02 0.0044 32.0 10.3 58 367-429 1104-1161(1666)
461 smart00101 14_3_3 14-3-3 homol 44.5 1.1E+02 0.0024 28.1 7.6 56 334-396 144-200 (244)
462 KOG0276 Vesicle coat complex C 44.5 45 0.00097 34.5 5.4 51 375-430 645-695 (794)
463 PF13041 PPR_2: PPR repeat fam 43.8 87 0.0019 20.1 6.1 39 368-406 4-43 (50)
464 KOG3807 Predicted membrane pro 43.2 1.8E+02 0.0039 27.9 8.7 91 336-426 234-336 (556)
465 PF12753 Nro1: Nuclear pore co 42.7 50 0.0011 32.3 5.3 45 383-429 334-390 (404)
466 PHA02122 hypothetical protein 42.5 42 0.00092 22.5 3.3 19 64-83 40-58 (65)
467 KOG1463 26S proteasome regulat 42.3 3.3E+02 0.0071 26.4 13.9 116 314-429 44-196 (411)
468 KOG4014 Uncharacterized conser 42.0 1.9E+02 0.0041 25.3 8.0 55 374-431 175-234 (248)
469 PF09122 DUF1930: Domain of un 41.6 42 0.00091 23.3 3.2 23 248-270 35-57 (68)
470 KOG0890 Protein kinase of the 41.4 2.5E+02 0.0053 34.3 11.1 67 363-431 1666-1732(2382)
471 KOG1497 COP9 signalosome, subu 40.6 1.2E+02 0.0026 28.9 7.2 64 363-427 99-170 (399)
472 PF08626 TRAPPC9-Trs120: Trans 40.6 2E+02 0.0044 33.1 10.6 37 315-351 239-275 (1185)
473 KOG2041 WD40 repeat protein [G 40.2 1E+02 0.0022 32.6 7.1 53 376-428 769-823 (1189)
474 PF13041 PPR_2: PPR repeat fam 40.0 72 0.0016 20.6 4.4 31 400-430 2-32 (50)
475 KOG0530 Protein farnesyltransf 39.8 2.5E+02 0.0053 26.2 8.8 63 370-432 115-178 (318)
476 KOG3616 Selective LIM binding 39.1 1.5E+02 0.0034 31.6 8.3 89 315-427 703-791 (1636)
477 KOG0890 Protein kinase of the 38.9 3.3E+02 0.0072 33.3 11.7 100 316-432 1668-1786(2382)
478 COG5159 RPN6 26S proteasome re 38.8 1.4E+02 0.0031 28.0 7.2 102 324-432 212-316 (421)
479 PRK11619 lytic murein transgly 38.4 2.6E+02 0.0056 29.8 10.2 53 377-429 322-374 (644)
480 KOG1914 mRNA cleavage and poly 37.9 1.1E+02 0.0025 31.2 7.0 61 368-429 21-81 (656)
481 PF01346 FKBP_N: Domain amino 37.8 23 0.00049 28.5 1.9 17 36-52 108-124 (124)
482 PF12309 KBP_C: KIF-1 binding 37.3 1.1E+02 0.0024 30.0 6.9 68 335-402 266-344 (371)
483 KOG4014 Uncharacterized conser 37.2 1.4E+02 0.003 26.2 6.4 81 332-431 87-198 (248)
484 smart00745 MIT Microtubule Int 37.0 1.6E+02 0.0034 21.1 7.8 23 373-395 14-36 (77)
485 TIGR00985 3a0801s04tom mitocho 36.2 1.1E+02 0.0024 25.6 5.7 40 311-350 83-123 (148)
486 KOG0889 Histone acetyltransfer 35.9 3.8E+02 0.0083 34.2 11.8 68 364-431 2809-2884(3550)
487 PF09670 Cas_Cas02710: CRISPR- 35.9 2.8E+02 0.0061 27.3 9.6 61 370-430 134-198 (379)
488 KOG0276 Vesicle coat complex C 35.5 2.5E+02 0.0053 29.4 8.9 75 318-392 666-746 (794)
489 PF04010 DUF357: Protein of un 35.4 1E+02 0.0022 22.5 4.7 38 310-347 27-64 (75)
490 cd02684 MIT_2 MIT: domain cont 35.1 1.7E+02 0.0038 21.1 7.1 15 334-348 3-17 (75)
491 PRK15490 Vi polysaccharide bio 34.6 1.5E+02 0.0032 31.0 7.4 54 370-425 45-98 (578)
492 PF14689 SPOB_a: Sensor_kinase 33.7 98 0.0021 21.5 4.3 19 376-394 32-50 (62)
493 PF12583 TPPII_N: Tripeptidyl 33.6 2.3E+02 0.0049 23.2 6.8 36 377-412 86-121 (139)
494 KOG2709 Uncharacterized conser 33.6 2.2E+02 0.0049 28.1 7.9 39 312-350 16-54 (560)
495 COG4649 Uncharacterized protei 33.3 1.5E+02 0.0032 25.8 6.0 77 323-414 137-213 (221)
496 KOG4322 Anaphase-promoting com 33.1 5.1E+02 0.011 25.9 11.1 108 314-430 269-382 (482)
497 cd02656 MIT MIT: domain contai 33.0 1E+02 0.0022 22.2 4.5 23 373-395 12-34 (75)
498 cd00280 TRFH Telomeric Repeat 32.5 2.7E+02 0.0059 24.4 7.5 45 372-417 116-160 (200)
499 PF05688 DUF824: Salmonella re 30.6 1E+02 0.0022 20.3 3.6 35 60-99 7-41 (47)
500 KOG1538 Uncharacterized conser 30.5 1.1E+02 0.0024 32.0 5.6 48 377-427 783-830 (1081)
No 1
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8e-58 Score=424.19 Aligned_cols=321 Identities=47% Similarity=0.767 Sum_probs=295.5
Q ss_pred ecCCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeeEEeCCCccccchHHHhccccCCcEEEEEEEcCCCCCCCCC
Q 013843 54 KNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVE 133 (435)
Q Consensus 54 ~~g~g~~~~~~gd~V~v~y~~~~~~g~~~~~s~~~~~p~~~~lg~~~~~~g~~~~l~~m~~G~~~~~~~~ip~~~~yg~~ 133 (435)
++|+|++.|..||.|.+||++++.||+.||||.+ +.|+.|.+|.+.++.||..++..|+.|+ .
T Consensus 1 ~eg~g~~~p~~g~~v~~hytg~l~dgt~fdss~d-~~~~~~~lg~g~vi~~~~~gv~tm~~g~----------------~ 63 (397)
T KOG0543|consen 1 KEGTGTETPMTGDKVEVHYTGTLLDGTKFDSSRD-GDPFKFDLGKGSVIKGWDLGVATMKKGE----------------A 63 (397)
T ss_pred CCCCCccCCCCCceeEEEEeEEecCCeecccccC-CCceeeecCCCccccccccccccccccc----------------c
Confidence 4799999999999999999999999999999999 7999999999999999999999998844 4
Q ss_pred CCC-CCCCCCeEEEEEEEeeeeeeeccCCCCceEEEEEeccCC-CCCCCCCCeEEEEEEEEeCCCceeeecCCCCeeEEE
Q 013843 134 GRD-SLPPNSVVQFEVELVSWITVVDLSKDGGIVKKILEKGER-DASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYL 211 (435)
Q Consensus 134 ~~~-~i~~~~~l~~~v~l~~~~~~~d~~~dg~~~k~ii~~G~g-~~~~~~~~~V~v~~~~~~~~g~~v~~~~~~~~~~~~ 211 (435)
+.+ .||++.++.|+|+|. |++++|+|+++|.| ..+|..+..|+|||.+.+.++
T Consensus 64 ~~pp~ip~~a~l~fe~el~----------Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~~--------------- 118 (397)
T KOG0543|consen 64 GSPPKIPSNATLLFEVELL----------DGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELEDG--------------- 118 (397)
T ss_pred CCCCCCCCCcceeeeeccc----------CCceEEeeeecCCCCCCCCCCCcEEEEEEEEEECCc---------------
Confidence 444 799999999999987 89999999999999 889998888887776665544
Q ss_pred EEEEEEEEecCCcEEeecCCCCCCCeEEEcCC-CCcchHHHHHHcccccCcEEEEEEcCCCCCCccccccccccCCCCCe
Q 013843 212 KDVSYIARLEDGTVFEKKGYDGEQPLEFITDE-EQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAK 290 (435)
Q Consensus 212 ~~v~y~~~~~~g~~f~~~~~~~~~p~~~~lg~-~~v~~g~~~~l~~m~~Ge~~~i~~~~~~~yg~~~~~~~~~~ip~~~~ 290 (435)
+|+++ ...+.|.+|+ ..|+.||+.||++|++||++.|.|+|+|+||..+... +.|||+++
T Consensus 119 -------------~f~~~----~~~fe~~~Ge~~~vi~Gle~al~~M~~GE~a~v~i~~~YayG~~~~~~--p~IPPnA~ 179 (397)
T KOG0543|consen 119 -------------VFDQR----ELRFEFGEGEDIDVIEGLEIALRMMKVGEVALVTIDPKYAYGEEGGEP--PLIPPNAT 179 (397)
T ss_pred -------------ceecc----ccceEEecCCccchhHHHHHHHHhcCccceEEEEeCcccccCCCCCCC--CCCCCCce
Confidence 44443 3458888888 5899999999999999999999999999999554432 48999999
Q ss_pred EEEEEEEEEEE-ecCCCCCCChHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHH
Q 013843 291 LYYEVEMMDFI-KEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSC 369 (435)
Q Consensus 291 l~~~iel~~~~-~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~ 369 (435)
+.|+|+|++|. ...+.|.+..++++..+...++.||.+|+.|+|..|+..|++|+..+.....+++++.+....++..+
T Consensus 180 l~yEVeL~~f~~~~~~s~~~~~~e~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~ 259 (397)
T KOG0543|consen 180 LLYEVELLDFELKEDESWKMFAEERLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLAC 259 (397)
T ss_pred EEEEEEEEeeecCcccccccchHHHHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHH
Confidence 99999999999 88899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Q 013843 370 WLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (435)
Q Consensus 370 ~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n~ 435 (435)
|+|+|.||+|+++|.+|+..|+++|+++|+|+||+||+|+||+.+++|+.|+.+|++|++++|+|+
T Consensus 260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nk 325 (397)
T KOG0543|consen 260 HLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNK 325 (397)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcH
Confidence 999999999999999999999999999999999999999999999999999999999999999985
No 2
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=7.6e-28 Score=199.33 Aligned_cols=176 Identities=28% Similarity=0.410 Sum_probs=134.6
Q ss_pred EEeCCCccccchHHHhccccCCcEEEEEEEcCCCCCCCCCCCCCCCCCCeEEEEEEEeeeeeee---ccCCCCceEEEEE
Q 013843 94 FKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPPNSVVQFEVELVSWITVV---DLSKDGGIVKKIL 170 (435)
Q Consensus 94 ~~lg~~~~~~g~~~~l~~m~~G~~~~~~~~ip~~~~yg~~~~~~i~~~~~l~~~v~l~~~~~~~---d~~~dg~~~k~ii 170 (435)
|.+|.+.+++|.+.++.+|..|+++++ .+||+++||..+.. .-..+++.+.++...... ....+..+.-.++
T Consensus 1 ~~~g~~~vi~gm~~~~~g~c~ge~rkv--v~pp~l~fg~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~I~v~ 75 (188)
T KOG0549|consen 1 FTLGQGFVIPGMDQALEGMCNGEKRKV--VIPPHLGFGEGGRG---DLNILVITILLVLLFRASAAEKWNPDEELQIGVL 75 (188)
T ss_pred CcccceEEecCHHHHhhhhhcccccee--ccCCcccccccccc---cccceEEEeeeeehhhhhhhhhcCCCCceeEEEE
Confidence 457888999999999999999999999 99999999955432 112355666655543221 1112233333333
Q ss_pred eccC-CCCCCCCCCeEEEEEEEEeCCCceeeecCCCCeeEEEEEEEEEEEecCCcEEeecCCCCCCCeEEEcCCCCcchH
Q 013843 171 EKGE-RDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAG 249 (435)
Q Consensus 171 ~~G~-g~~~~~~~~~V~v~~~~~~~~g~~v~~~~~~~~~~~~~~v~y~~~~~~g~~f~~~~~~~~~p~~~~lg~~~v~~g 249 (435)
.+-. .....+.+|.+. +||++.+.||+.|||| |++++|++|+||.++||+|
T Consensus 76 ~~p~~C~~kak~GD~l~---------------------------~HY~g~leDGt~fdSS-~~rg~P~~f~LG~gqVIkG 127 (188)
T KOG0549|consen 76 KKPEECPEKAKKGDTLH---------------------------VHYTGSLEDGTKFDSS-YSRGAPFTFTLGTGQVIKG 127 (188)
T ss_pred ECCccccccccCCCEEE---------------------------EEEEEEecCCCEEeee-ccCCCCEEEEeCCCceecc
Confidence 2211 222223333322 5888888999999999 9999999999999999999
Q ss_pred HHHHHcccccCcEEEEEEcCCCCCCccccccccccCCCCCeEEEEEEEEEEEecCC
Q 013843 250 LDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEKV 305 (435)
Q Consensus 250 ~~~~l~~m~~Ge~~~i~~~~~~~yg~~~~~~~~~~ip~~~~l~~~iel~~~~~~~~ 305 (435)
||++|.+|++||+..++|||+++||+.|.++ .||++++|+|+|||..+.+...
T Consensus 128 ~Dqgl~gMCvGEkRkl~IPp~LgYG~~G~~~---~IP~~A~LiFdiELv~i~~~~~ 180 (188)
T KOG0549|consen 128 WDQGLLGMCVGEKRKLIIPPHLGYGERGAPP---KIPGDAVLIFDIELVKIERGPP 180 (188)
T ss_pred HhHHhhhhCcccceEEecCccccCccCCCCC---CCCCCeeEEEEEEEEEeecCCC
Confidence 9999999999999999999999999999886 5999999999999999987643
No 3
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.9e-28 Score=207.86 Aligned_cols=116 Identities=42% Similarity=0.637 Sum_probs=109.2
Q ss_pred CCccCCcceeecCCCeEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeeEEeCCCccccchHHHhccc
Q 013843 33 APLKVGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITM 112 (435)
Q Consensus 33 ~~~~~~~~~~~~~~g~~~~~~~~g~g~~~~~~gd~V~v~y~~~~~~g~~~~~s~~~~~p~~~~lg~~~~~~g~~~~l~~m 112 (435)
+..+....+.++++||+|++++.|+| ..|..+|.|+|||++++.||++||||+++++|+.|+|| ++|+||.++|.+|
T Consensus 88 ~~~~k~~~v~~~~sgl~y~~~~~G~G-~~~~~~~~V~vhY~G~l~~G~vFDsS~~rg~p~~f~l~--~vI~Gw~egl~~M 164 (205)
T COG0545 88 EKNAKEKGVKTLPSGLQYKVLKAGDG-AAPKKGDTVTVHYTGTLIDGTVFDSSYDRGQPAEFPLG--GVIPGWDEGLQGM 164 (205)
T ss_pred hhhcccCCceECCCCcEEEEEeccCC-CCCCCCCEEEEEEEEecCCCCccccccccCCCceeecC--CeeehHHHHHhhC
Confidence 44445566788999999999999999 99999999999999999999999999999999999999 9999999999999
Q ss_pred cCCcEEEEEEEcCCCCCCCCCCCC-CCCCCCeEEEEEEEeee
Q 013843 113 KKRECAVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSW 153 (435)
Q Consensus 113 ~~G~~~~~~~~ip~~~~yg~~~~~-~i~~~~~l~~~v~l~~~ 153 (435)
++|+++++ +|||++|||..+.+ .||||++|+|+|+|+.+
T Consensus 165 ~vG~k~~l--~IP~~laYG~~g~~g~Ippns~LvFeVeLl~v 204 (205)
T COG0545 165 KVGGKRKL--TIPPELAYGERGVPGVIPPNSTLVFEVELLDV 204 (205)
T ss_pred CCCceEEE--EeCchhccCcCCCCCCCCCCCeEEEEEEEEec
Confidence 99999999 99999999999977 59999999999999876
No 4
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4.1e-28 Score=176.45 Aligned_cols=105 Identities=41% Similarity=0.768 Sum_probs=102.2
Q ss_pred CeEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeeEEeCCCccccchHHHhccccCCcEEEEEEEcCC
Q 013843 47 GIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPS 126 (435)
Q Consensus 47 g~~~~~~~~g~g~~~~~~gd~V~v~y~~~~~~g~~~~~s~~~~~p~~~~lg~~~~~~g~~~~l~~m~~G~~~~~~~~ip~ 126 (435)
|+.++++.+|+|...|+.|++|++||++.+.||+.||||.+++.|+.|.+|.+++|.||++++..|.+|+++++ .|+|
T Consensus 2 Gv~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~dG~kfDSs~dr~kPfkf~IGkgeVIkGwdegv~qmsvGekakL--ti~p 79 (108)
T KOG0544|consen 2 GVEKQVISPGDGRTFPKKGQTVTVHYTGTLQDGKKFDSSRDRGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAKL--TISP 79 (108)
T ss_pred CceeEEeeCCCCcccCCCCCEEEEEEEeEecCCcEeecccccCCCeeEEecCcceeechhhcchhcccccccee--eecc
Confidence 68999999999988899999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred CCCCCCCCCC-CCCCCCeEEEEEEEeee
Q 013843 127 ELRFGVEGRD-SLPPNSVVQFEVELVSW 153 (435)
Q Consensus 127 ~~~yg~~~~~-~i~~~~~l~~~v~l~~~ 153 (435)
++|||..+.+ .||||++|+|+|||+++
T Consensus 80 d~aYG~~G~p~~IppNatL~FdVEll~v 107 (108)
T KOG0544|consen 80 DYAYGPRGHPGGIPPNATLVFDVELLKV 107 (108)
T ss_pred ccccCCCCCCCccCCCcEEEEEEEEEec
Confidence 9999999988 99999999999999876
No 5
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=9.7e-28 Score=207.64 Aligned_cols=246 Identities=25% Similarity=0.379 Sum_probs=201.8
Q ss_pred CCceEEEEEeccCCC-CCCCCCCeEEEEEEEEeCCCceeeecCCCCeeEEEEEEEEEEEecCCcEEeecCCCCCCCeEEE
Q 013843 162 DGGIVKKILEKGERD-ASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFI 240 (435)
Q Consensus 162 dg~~~k~ii~~G~g~-~~~~~~~~V~v~~~~~~~~g~~v~~~~~~~~~~~~~~v~y~~~~~~g~~f~~~~~~~~~p~~~~ 240 (435)
..++.|+|+..|+|. ....++..|++||.....+. .+++.|.| ..-++|++++
T Consensus 9 ~~gv~Kril~~G~g~l~e~~dGTrv~FHfrtl~~~e-------------------------~~tviDDs-Rk~gkPmeii 62 (329)
T KOG0545|consen 9 VEGVKKRILHGGTGELPEFIDGTRVIFHFRTLKCDE-------------------------ERTVIDDS-RKVGKPMEII 62 (329)
T ss_pred chhhhHhhccCCCccCccccCCceEEEEEEecccCc-------------------------ccccccch-hhcCCCeEEe
Confidence 346788999999973 45667788888886655432 23344444 4668999999
Q ss_pred cCCCCcchHHHHHHcccccCcEEEEEEcCC----CCCCcc-------cccc--------c----c-----------ccCC
Q 013843 241 TDEEQVIAGLDRVAATMKKEEWAIVTINHE----YGFGNV-------EAKR--------D----L-----------ATIP 286 (435)
Q Consensus 241 lg~~~v~~g~~~~l~~m~~Ge~~~i~~~~~----~~yg~~-------~~~~--------~----~-----------~~ip 286 (435)
+|...-.+.|+.++.+|.++|.+.|+|+-. |.|-.+ |..+ . + ....
T Consensus 63 iGkkFkL~VwE~il~tM~v~EvaqF~~d~~~~vqYPfvsksLRdia~GK~p~e~~~H~Cg~a~m~~~~glGyedLDeL~k 142 (329)
T KOG0545|consen 63 IGKKFKLEVWEIILTTMRVHEVAQFWCDTIHTVQYPFVSKSLRDIAQGKDPTEWHRHCCGLANMFAYHGLGYEDLDELQK 142 (329)
T ss_pred eccccccHHHHHHHHHHhhhhHHHhhhhhhheeechhHHHHHHHHhcCCCcchhhhhhhhhHHHHHhcCCChhhHHHHhh
Confidence 999999999999999999999999998732 222111 1000 0 0 0112
Q ss_pred CCCeEEEEEEEEEEEec----CCCCCCChHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccC---CCCChHHH
Q 013843 287 SCAKLYYEVEMMDFIKE----KVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSED---GSFVDDEQ 359 (435)
Q Consensus 287 ~~~~l~~~iel~~~~~~----~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~---~~~~~~~~ 359 (435)
..++|+|.++|+.+..+ .+.|+|+.++++.....++++||.+|+.|+|.+|...|+.|+....+. ....+.+|
T Consensus 143 nPqpL~FviellqVe~P~qYq~e~WqlsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW 222 (329)
T KOG0545|consen 143 NPQPLVFVIELLQVEAPSQYQRETWQLSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEW 222 (329)
T ss_pred CCCceEeehhhhhccCchhhccccccCCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHH
Confidence 34689999999998754 578999999999999999999999999999999999999999876543 23345799
Q ss_pred HHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q 013843 360 KLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQ 433 (435)
Q Consensus 360 ~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~ 433 (435)
.++......+++|.++|++..++|.+++++|..+|..+|.|.||||++|.|+...-+..+|.++|.++|+++|.
T Consensus 223 ~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 223 LELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred HHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999995
No 6
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.91 E-value=6.6e-24 Score=187.32 Aligned_cols=113 Identities=35% Similarity=0.539 Sum_probs=106.7
Q ss_pred cCCcceeecCCCeEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeeEEeCCCccccchHHHhccccCC
Q 013843 36 KVGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKR 115 (435)
Q Consensus 36 ~~~~~~~~~~~g~~~~~~~~g~g~~~~~~gd~V~v~y~~~~~~g~~~~~s~~~~~p~~~~lg~~~~~~g~~~~l~~m~~G 115 (435)
+..+.++++++|++|+++++|+| ..|+.||.|.|||++++.||++|++|+.++.|+.|.++ .+++||+++|.+|++|
T Consensus 92 ~k~~gv~~t~sGl~y~vi~~G~G-~~p~~~d~V~v~Y~g~l~dG~vfdss~~~g~P~~f~l~--~vipG~~eaL~~M~~G 168 (206)
T PRK11570 92 AKKEGVNSTESGLQFRVLTQGEG-AIPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVN--GVIPGWIEALTLMPVG 168 (206)
T ss_pred hhcCCcEECCCCcEEEEEeCCCC-CCCCCCCEEEEEEEEEECCCCEEEeccCCCCCeEEEee--chhhHHHHHHcCCCCC
Confidence 34566788999999999999999 89999999999999999999999999998899999997 7999999999999999
Q ss_pred cEEEEEEEcCCCCCCCCCCCC-CCCCCCeEEEEEEEeee
Q 013843 116 ECAVFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSW 153 (435)
Q Consensus 116 ~~~~~~~~ip~~~~yg~~~~~-~i~~~~~l~~~v~l~~~ 153 (435)
++++| +|||++|||..+.+ .|||+++|+|+|+|+++
T Consensus 169 ~k~~~--~IP~~lAYG~~g~~~~Ipp~s~Lif~veLl~i 205 (206)
T PRK11570 169 SKWEL--TIPHELAYGERGAGASIPPFSTLVFEVELLEI 205 (206)
T ss_pred CEEEE--EECHHHcCCCCCCCCCcCCCCeEEEEEEEEEE
Confidence 99999 99999999999876 89999999999999886
No 7
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=4.5e-23 Score=171.04 Aligned_cols=110 Identities=36% Similarity=0.608 Sum_probs=98.3
Q ss_pred cCCCeEEEEEecCC-CCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeeEEeCCCccccchHHHhccccCCcEEEEEE
Q 013843 44 GNSGIKKKLLKNGV-DWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTF 122 (435)
Q Consensus 44 ~~~g~~~~~~~~g~-g~~~~~~gd~V~v~y~~~~~~g~~~~~s~~~~~p~~~~lg~~~~~~g~~~~l~~m~~G~~~~~~~ 122 (435)
+.++|+..++..=+ -..+.+.||.|.+||++.+.||++||||++++.|++|.||.+++|+||+.+|.+|.+||++++
T Consensus 66 ~~~~l~I~v~~~p~~C~~kak~GD~l~~HY~g~leDGt~fdSS~~rg~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl-- 143 (188)
T KOG0549|consen 66 PDEELQIGVLKKPEECPEKAKKGDTLHVHYTGSLEDGTKFDSSYSRGAPFTFTLGTGQVIKGWDQGLLGMCVGEKRKL-- 143 (188)
T ss_pred CCCceeEEEEECCccccccccCCCEEEEEEEEEecCCCEEeeeccCCCCEEEEeCCCceeccHhHHhhhhCcccceEE--
Confidence 34555555555422 347789999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCCCCCCCC-CCCCCCeEEEEEEEeeeee
Q 013843 123 TLPSELRFGVEGRD-SLPPNSVVQFEVELVSWIT 155 (435)
Q Consensus 123 ~ip~~~~yg~~~~~-~i~~~~~l~~~v~l~~~~~ 155 (435)
.|||++|||++|.+ .||+++.|+|+|+|+++..
T Consensus 144 ~IPp~LgYG~~G~~~~IP~~A~LiFdiELv~i~~ 177 (188)
T KOG0549|consen 144 IIPPHLGYGERGAPPKIPGDAVLIFDIELVKIER 177 (188)
T ss_pred ecCccccCccCCCCCCCCCCeeEEEEEEEEEeec
Confidence 99999999999977 7999999999999999864
No 8
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.2e-22 Score=188.02 Aligned_cols=272 Identities=22% Similarity=0.250 Sum_probs=189.6
Q ss_pred eecCCCeEEEEEecCCC-CCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeeEEeCC-CccccchHHHhccccCCcEEE
Q 013843 42 GLGNSGIKKKLLKNGVD-WDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGT-GQVATGLDNGIITMKKRECAV 119 (435)
Q Consensus 42 ~~~~~g~~~~~~~~g~g-~~~~~~gd~V~v~y~~~~~~g~~~~~s~~~~~p~~~~lg~-~~~~~g~~~~l~~m~~G~~~~ 119 (435)
.+.++||.++|+++|.| -..|..|.+|.|||.+++.++ +|+++. ..+.|.+|. ..++.||+.+|..|++||.+.
T Consensus 80 el~Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~~-~f~~~~---~~fe~~~Ge~~~vi~Gle~al~~M~~GE~a~ 155 (397)
T KOG0543|consen 80 ELLDGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELEDG-VFDQRE---LRFEFGEGEDIDVIEGLEIALRMMKVGEVAL 155 (397)
T ss_pred cccCCceEEeeeecCCCCCCCCCCCcEEEEEEEEEECCc-ceeccc---cceEEecCCccchhHHHHHHHHhcCccceEE
Confidence 34599999999999999 788999999999999999766 777654 337778887 479999999999999999999
Q ss_pred EEEEcCCCCCCCCCC-CC-CCCCCCeEEEEEEEeeeeeeeccCCCCceEEEEEeccCCCCCCCCCCeEEEEEEEEeCCCc
Q 013843 120 FTFTLPSELRFGVEG-RD-SLPPNSVVQFEVELVSWITVVDLSKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGT 197 (435)
Q Consensus 120 ~~~~ip~~~~yg~~~-~~-~i~~~~~l~~~v~l~~~~~~~d~~~dg~~~k~ii~~G~g~~~~~~~~~V~v~~~~~~~~g~ 197 (435)
| +|+|.++||..+ .+ .|||++++.|+|+|+.+....+.+...... .++... +
T Consensus 156 v--~i~~~YayG~~~~~~p~IPPnA~l~yEVeL~~f~~~~~~s~~~~~~-e~l~~A-----------------------~ 209 (397)
T KOG0543|consen 156 V--TIDPKYAYGEEGGEPPLIPPNATLLYEVELLDFELKEDESWKMFAE-ERLEAA-----------------------D 209 (397)
T ss_pred E--EeCcccccCCCCCCCCCCCCCceEEEEEEEEeeecCcccccccchH-HHHHHH-----------------------H
Confidence 9 999999999544 33 999999999999999985322211000000 000000 0
Q ss_pred eeeecCCCCeeEEEEEEEEEEEecCCcEEeecCCCCCCCeEEEcCCCCcchHHHHHHcccccCcEEEEEEcCCCCCCccc
Q 013843 198 MVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVE 277 (435)
Q Consensus 198 ~v~~~~~~~~~~~~~~v~y~~~~~~g~~f~~~~~~~~~p~~~~lg~~~v~~g~~~~l~~m~~Ge~~~i~~~~~~~yg~~~ 277 (435)
... ..|+. -|.-| . |..|... -+++.-++..+..
T Consensus 210 ~~k--------------------e~Gn~------------~fK~g--k----~~~A~~~---Yerav~~l~~~~~----- 243 (397)
T KOG0543|consen 210 RKK--------------------ERGNV------------LFKEG--K----FKLAKKR---YERAVSFLEYRRS----- 243 (397)
T ss_pred HHH--------------------HhhhH------------HHhhc--h----HHHHHHH---HHHHHHHhhcccc-----
Confidence 000 01111 11111 1 1112111 1111111111100
Q ss_pred cccccccCCCCCeEEEEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChH
Q 013843 278 AKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDD 357 (435)
Q Consensus 278 ~~~~~~~ip~~~~l~~~iel~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~ 357 (435)
.++ +-.....--....+.+.+..+.+.++|..|+..++++|.+.|.+.
T Consensus 244 -------~~~--------------------ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~----- 291 (397)
T KOG0543|consen 244 -------FDE--------------------EEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNV----- 291 (397)
T ss_pred -------CCH--------------------HHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCch-----
Confidence 000 000011123345688899999999999999999999999998864
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHH-HHHHHHHHHhC
Q 013843 358 EQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILA-ELDIKKAIEAD 431 (435)
Q Consensus 358 ~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA-~~~~~~al~l~ 431 (435)
.+++.+|.+++.+++|+.|+.++++|++++|.|-.+...+..+..+..++.+. .+.|.+.+..-
T Consensus 292 ----------KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~ 356 (397)
T KOG0543|consen 292 ----------KALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKL 356 (397)
T ss_pred ----------hHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 67999999999999999999999999999999988888888888888777665 77777776543
No 9
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=6e-23 Score=149.62 Aligned_cols=106 Identities=30% Similarity=0.519 Sum_probs=96.7
Q ss_pred ceEEEEEeccCCCCCCCCCCeEEEEEEEEeCCCceeeecCCCCeeEEEEEEEEEEEecCCcEEeecCCCCCCCeEEEcCC
Q 013843 164 GIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFITDE 243 (435)
Q Consensus 164 ~~~k~ii~~G~g~~~~~~~~~V~v~~~~~~~~g~~v~~~~~~~~~~~~~~v~y~~~~~~g~~f~~~~~~~~~p~~~~lg~ 243 (435)
++.+.++..|+|...|+.++.|++ ||+|.+.||+.|||| .+++.|+.|.+|.
T Consensus 2 Gv~~~~i~~Gdg~tfpK~Gqtvt~---------------------------hYtg~L~dG~kfDSs-~dr~kPfkf~IGk 53 (108)
T KOG0544|consen 2 GVEKQVISPGDGRTFPKKGQTVTV---------------------------HYTGTLQDGKKFDSS-RDRGKPFKFKIGK 53 (108)
T ss_pred CceeEEeeCCCCcccCCCCCEEEE---------------------------EEEeEecCCcEeecc-cccCCCeeEEecC
Confidence 356789999999999999998886 556777788889988 7999999999999
Q ss_pred CCcchHHHHHHcccccCcEEEEEEcCCCCCCccccccccccCCCCCeEEEEEEEEEE
Q 013843 244 EQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDF 300 (435)
Q Consensus 244 ~~v~~g~~~~l~~m~~Ge~~~i~~~~~~~yg~~~~~~~~~~ip~~~~l~~~iel~~~ 300 (435)
++||.||++++..|.+||++.+.|+|+|+||..+.+. .|||+++|.|++||+++
T Consensus 54 geVIkGwdegv~qmsvGekakLti~pd~aYG~~G~p~---~IppNatL~FdVEll~v 107 (108)
T KOG0544|consen 54 GEVIKGWDEGVAQMSVGEKAKLTISPDYAYGPRGHPG---GIPPNATLVFDVELLKV 107 (108)
T ss_pred cceeechhhcchhccccccceeeeccccccCCCCCCC---ccCCCcEEEEEEEEEec
Confidence 9999999999999999999999999999999999775 79999999999999876
No 10
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.89 E-value=1.4e-22 Score=174.57 Aligned_cols=110 Identities=31% Similarity=0.447 Sum_probs=102.6
Q ss_pred eeecCCCeEEEEEec--CCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeeEEeCCCccccchHHHhccccCCcEE
Q 013843 41 RGLGNSGIKKKLLKN--GVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECA 118 (435)
Q Consensus 41 ~~~~~~g~~~~~~~~--g~g~~~~~~gd~V~v~y~~~~~~g~~~~~s~~~~~p~~~~lg~~~~~~g~~~~l~~m~~G~~~ 118 (435)
...+++|++|+++++ |+| ..|+.||.|++||++++.||++|++++.. .|+.|.+|.+++++||+++|.+|++||++
T Consensus 64 ~~~t~sGl~Y~v~~~~~g~g-~~p~~gd~V~v~Y~~~~~dG~v~~ss~~~-~P~~f~vg~~~vi~Gl~e~L~~Mk~Ge~~ 141 (177)
T TIGR03516 64 YETSQNGFWYYYNQKDTGEG-TTPEFGDLVTFEYDIRALDGDVIYSEEEL-GPQTYKVDQQDLFSGLRDGLKLMKEGETA 141 (177)
T ss_pred ceECCCccEEEEEEecCCCC-CcCCCCCEEEEEEEEEeCCCCEEEeCCCC-CCEEEEeCCcchhHHHHHHHcCCCCCCEE
Confidence 477999999999976 566 78999999999999999999999999874 69999999999999999999999999999
Q ss_pred EEEEEcCCCCCCCCCCCC-CCCCCCeEEEEEEEeeee
Q 013843 119 VFTFTLPSELRFGVEGRD-SLPPNSVVQFEVELVSWI 154 (435)
Q Consensus 119 ~~~~~ip~~~~yg~~~~~-~i~~~~~l~~~v~l~~~~ 154 (435)
+| +|||++|||..+.+ .||+|++|+|+|+|+++.
T Consensus 142 ~~--~iP~~~AYG~~g~~~~Ippns~L~f~IeL~~i~ 176 (177)
T TIGR03516 142 TF--LFPSHKAYGYYGDQNKIGPNLPIISTVTLLNIK 176 (177)
T ss_pred EE--EECHHHcCCCCCCCCCcCcCCcEEEEEEEEEec
Confidence 99 99999999999876 899999999999999874
No 11
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=2.1e-22 Score=175.77 Aligned_cols=108 Identities=34% Similarity=0.608 Sum_probs=104.2
Q ss_pred eecCCCeEEEEEecCCCCCCCCCCCEEEEEEEEEEc-CCcEEecccCCCCCee-EEeCCCccccchHHHhccccCCcEEE
Q 013843 42 GLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLL-DGTKFDSTRDRYDPLT-FKLGTGQVATGLDNGIITMKKRECAV 119 (435)
Q Consensus 42 ~~~~~g~~~~~~~~g~g~~~~~~gd~V~v~y~~~~~-~g~~~~~s~~~~~p~~-~~lg~~~~~~g~~~~l~~m~~G~~~~ 119 (435)
.++++||+|+.++.|.| ..+..|+.|.+||.+++. +|.+|+++... .|+. |.+|.+++|+||+.+|.+|++|++++
T Consensus 116 ~tl~~Gl~y~D~~vG~G-~~a~~G~rV~v~Y~Gkl~~~GkvFd~~~~~-kp~~~f~lg~g~VIkG~d~gv~GMkvGGkRr 193 (226)
T KOG0552|consen 116 RTLPGGLRYEDLRVGSG-PSAKKGKRVSVRYIGKLKGNGKVFDSNFGG-KPFKLFRLGSGEVIKGWDVGVEGMKVGGKRR 193 (226)
T ss_pred eecCCCcEEEEEEecCC-CCCCCCCEEEEEEEEEecCCCeEeecccCC-CCccccccCCCCCCchHHHhhhhhccCCeeE
Confidence 57899999999999999 999999999999999998 99999999875 8888 99999999999999999999999999
Q ss_pred EEEEcCCCCCCCCCCCCCCCCCCeEEEEEEEeee
Q 013843 120 FTFTLPSELRFGVEGRDSLPPNSVVQFEVELVSW 153 (435)
Q Consensus 120 ~~~~ip~~~~yg~~~~~~i~~~~~l~~~v~l~~~ 153 (435)
| +|||.+|||..+.+.||||++|+|+|+|+.+
T Consensus 194 v--iIPp~lgYg~~g~~~IppnstL~fdVEL~~v 225 (226)
T KOG0552|consen 194 V--IIPPELGYGKKGVPEIPPNSTLVFDVELLSV 225 (226)
T ss_pred E--EeCccccccccCcCcCCCCCcEEEEEEEEec
Confidence 9 9999999999999999999999999999876
No 12
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.88 E-value=7e-22 Score=180.77 Aligned_cols=115 Identities=32% Similarity=0.574 Sum_probs=107.5
Q ss_pred cCCcceeecCCCeEEEEEecCCCCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeeEEeCCCccccchHHHhccccCC
Q 013843 36 KVGEERGLGNSGIKKKLLKNGVDWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKR 115 (435)
Q Consensus 36 ~~~~~~~~~~~g~~~~~~~~g~g~~~~~~gd~V~v~y~~~~~~g~~~~~s~~~~~p~~~~lg~~~~~~g~~~~l~~m~~G 115 (435)
...+.+.++++||+|+|+++|+| ..|+.||.|.|||++++.||++|++++.++.|+.|.++ .+++||+++|.+|++|
T Consensus 136 ~k~~gv~~t~sGl~y~Vi~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~l~--~vipG~~EaL~~Mk~G 212 (269)
T PRK10902 136 AKEKGVKTTSTGLLYKVEKEGTG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKG 212 (269)
T ss_pred ccCCCcEECCCccEEEEEeCCCC-CCCCCCCEEEEEEEEEeCCCCEeeccccCCCceEEecC--CcchHHHHHHhcCCCC
Confidence 34455788999999999999999 89999999999999999999999999998899999997 7999999999999999
Q ss_pred cEEEEEEEcCCCCCCCCCCCCCCCCCCeEEEEEEEeeeee
Q 013843 116 ECAVFTFTLPSELRFGVEGRDSLPPNSVVQFEVELVSWIT 155 (435)
Q Consensus 116 ~~~~~~~~ip~~~~yg~~~~~~i~~~~~l~~~v~l~~~~~ 155 (435)
++++| +||++++||..+.+.||++++++|+|+|+++..
T Consensus 213 ek~~l--~IP~~laYG~~g~~gIppns~LvfeVeLl~V~~ 250 (269)
T PRK10902 213 GKIKL--VIPPELAYGKAGVPGIPANSTLVFDVELLDVKP 250 (269)
T ss_pred cEEEE--EECchhhCCCCCCCCCCCCCcEEEEEEEEEecc
Confidence 99999 999999999999889999999999999998864
No 13
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=6.5e-21 Score=162.10 Aligned_cols=106 Identities=36% Similarity=0.528 Sum_probs=94.1
Q ss_pred CCCceEEEEEeccCCCCCCCCCCeEEEEEEEEeCCCceeeecCCCCeeEEEEEEEEEEEecCCcEEeecCCCCCCCeEEE
Q 013843 161 KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFI 240 (435)
Q Consensus 161 ~dg~~~k~ii~~G~g~~~~~~~~~V~v~~~~~~~~g~~v~~~~~~~~~~~~~~v~y~~~~~~g~~f~~~~~~~~~p~~~~ 240 (435)
-.+++..++++.|.|. .|..++.|++ ||+|+|.||++||+| |++++|+.|.
T Consensus 99 ~~sgl~y~~~~~G~G~-~~~~~~~V~v---------------------------hY~G~l~~G~vFDsS-~~rg~p~~f~ 149 (205)
T COG0545 99 LPSGLQYKVLKAGDGA-APKKGDTVTV---------------------------HYTGTLIDGTVFDSS-YDRGQPAEFP 149 (205)
T ss_pred CCCCcEEEEEeccCCC-CCCCCCEEEE---------------------------EEEEecCCCCccccc-cccCCCceee
Confidence 4567788888899874 5666666664 778999999999999 9999999999
Q ss_pred cCCCCcchHHHHHHcccccCcEEEEEEcCCCCCCccccccccccCCCCCeEEEEEEEEEE
Q 013843 241 TDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDF 300 (435)
Q Consensus 241 lg~~~v~~g~~~~l~~m~~Ge~~~i~~~~~~~yg~~~~~~~~~~ip~~~~l~~~iel~~~ 300 (435)
|| +||+||+.+|..|++|+++.++|||++|||..+... .|||+++|+|+|+|+++
T Consensus 150 l~--~vI~Gw~egl~~M~vG~k~~l~IP~~laYG~~g~~g---~Ippns~LvFeVeLl~v 204 (205)
T COG0545 150 LG--GVIPGWDEGLQGMKVGGKRKLTIPPELAYGERGVPG---VIPPNSTLVFEVELLDV 204 (205)
T ss_pred cC--CeeehHHHHHhhCCCCceEEEEeCchhccCcCCCCC---CCCCCCeEEEEEEEEec
Confidence 97 999999999999999999999999999999999765 59999999999999876
No 14
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=99.80 E-value=3.2e-19 Score=139.23 Aligned_cols=92 Identities=47% Similarity=0.805 Sum_probs=86.6
Q ss_pred CCCCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeeEEeCCCccccchHHHhccccCCcEEEEEEEcCCCCCCCCCCCC-
Q 013843 58 DWDTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRD- 136 (435)
Q Consensus 58 g~~~~~~gd~V~v~y~~~~~~g~~~~~s~~~~~p~~~~lg~~~~~~g~~~~l~~m~~G~~~~~~~~ip~~~~yg~~~~~- 136 (435)
|.++|+.||.|+|||++++.+|++|++++..+.|+.|.+|.+.+++||+++|.+|++|++++| .||++++||..+..
T Consensus 1 ~~~~~~~gd~V~i~y~~~~~~g~~~~~~~~~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~--~vp~~~ayg~~~~~~ 78 (94)
T PF00254_consen 1 GPRTPKEGDTVTIHYTGRLEDGKVFDSSYQEGEPFEFRLGSGQVIPGLEEALIGMKVGEKREF--YVPPELAYGEKGLEP 78 (94)
T ss_dssp SSSSBSTTSEEEEEEEEEETTSEEEEETTTTTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEE--EEEGGGTTTTTTBCT
T ss_pred CCccCCCCCEEEEEEEEEECCCcEEEEeeecCcceeeeeccCccccchhhhcccccCCCEeee--EeCChhhcCccccCC
Confidence 346799999999999999999999999988889999999999999999999999999999999 99999999999874
Q ss_pred -CCCCCCeEEEEEEEe
Q 013843 137 -SLPPNSVVQFEVELV 151 (435)
Q Consensus 137 -~i~~~~~l~~~v~l~ 151 (435)
.||++++++|+|+|+
T Consensus 79 ~~ip~~~~l~f~Iell 94 (94)
T PF00254_consen 79 PKIPPNSTLVFEIELL 94 (94)
T ss_dssp TTBTTTSEEEEEEEEE
T ss_pred CCcCCCCeEEEEEEEC
Confidence 699999999999985
No 15
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.80 E-value=3.7e-19 Score=160.12 Aligned_cols=108 Identities=34% Similarity=0.431 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHH
Q 013843 313 GKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSK 392 (435)
Q Consensus 313 ~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 392 (435)
+-...++.++.+||.+++.++|.+|+..|.+||+++|.+.. .|+|+|.+|.++|+|+.|+++|+.
T Consensus 76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAV---------------yycNRAAAy~~Lg~~~~AVkDce~ 140 (304)
T KOG0553|consen 76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAV---------------YYCNRAAAYSKLGEYEDAVKDCES 140 (304)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcch---------------HHHHHHHHHHHhcchHHHHHHHHH
Confidence 67789999999999999999999999999999999999874 499999999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Q 013843 393 VLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (435)
Q Consensus 393 al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n~ 435 (435)
||.+||.+.++|-|+|.+|+.+|++++|++.|++||++||+|.
T Consensus 141 Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 141 ALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNE 183 (304)
T ss_pred HHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcH
Confidence 9999999999999999999999999999999999999999983
No 16
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.76 E-value=3.3e-18 Score=144.66 Aligned_cols=124 Identities=25% Similarity=0.400 Sum_probs=95.4
Q ss_pred CCCCCCEEEEEEEEEEcCCcEEecccCCCCCeeEEeCCCccccchHHHhccccCCcEEEEEEEcCCCCCCCCCCCCCCCC
Q 013843 61 TPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPP 140 (435)
Q Consensus 61 ~~~~gd~V~v~y~~~~~~g~~~~~s~~~~~p~~~~lg~~~~~~g~~~~l~~m~~G~~~~~~~~ip~~~~yg~~~~~~i~~ 140 (435)
.++.||.|++||++++.||++|++|+..+.|+.|.+|.+++++||+++|.+|++|++++| .|||+.|||.++..
T Consensus 4 ~i~~~~~V~v~Y~~~~~dG~v~dst~~~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v--~ipp~~ayG~~d~~---- 77 (156)
T PRK15095 4 SVQSNSAVLVHFTLKLDDGSTAESTRNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTF--SLEPEAAFGVPSPD---- 77 (156)
T ss_pred ccCCCCEEEEEEEEEeCCCCEEEECCCCCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEE--EEChHHhcCCCChH----
Confidence 578999999999999999999999998779999999999999999999999999999999 99999999998753
Q ss_pred CCeEEEEEEEeeeee--------eecc-CCCCceEE-EEEeccCCCCCCCCCCeEEEEEEEEeCCCceeee
Q 013843 141 NSVVQFEVELVSWIT--------VVDL-SKDGGIVK-KILEKGERDASPGDLDEVLVKYQVMLGDGTMVAK 201 (435)
Q Consensus 141 ~~~l~~~v~l~~~~~--------~~d~-~~dg~~~k-~ii~~G~g~~~~~~~~~V~v~~~~~~~~g~~v~~ 201 (435)
++..+....+.. .-.+ ..+|.... +|+.- +.+.|++++||+++|.++.|+
T Consensus 78 ---~v~~vp~~~f~~~~~~~~G~~~~~~~~~G~~~~~~V~~i--------~~~~v~vD~NHPLAGk~L~f~ 137 (156)
T PRK15095 78 ---LIQYFSRRDFMDAGEPEIGAIMLFTAMDGSEMPGVIREI--------NGDSITVDFNHPLAGQTVHFD 137 (156)
T ss_pred ---HEEEecHHHCCcccCCCCCCEEEEECCCCCEEEEEEEEE--------cCCEEEEECCCcCCCCEEEEE
Confidence 222222211110 0001 12333222 33332 457999999999999998875
No 17
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.76 E-value=1.1e-17 Score=141.43 Aligned_cols=113 Identities=40% Similarity=0.541 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHH
Q 013843 312 QGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCS 391 (435)
Q Consensus 312 ~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~ 391 (435)
+..+..+..++..||.+|+.|+|..|...|..||+++|..+ .+.+..+|.|+|.|+++++.|+.|++.|.
T Consensus 89 ~k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~----------~e~rsIly~Nraaa~iKl~k~e~aI~dcs 158 (271)
T KOG4234|consen 89 DKAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTS----------TEERSILYSNRAAALIKLRKWESAIEDCS 158 (271)
T ss_pred HHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcccc----------HHHHHHHHhhhHHHHHHhhhHHHHHHHHH
Confidence 34578899999999999999999999999999999998765 35678899999999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 013843 392 KVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 392 ~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
+||+++|.+.+|+.|||.+|.++..|++|+.+|++.++++|.+
T Consensus 159 Kaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 159 KAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSR 201 (271)
T ss_pred hhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcch
Confidence 9999999999999999999999999999999999999999975
No 18
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=8.9e-18 Score=140.67 Aligned_cols=130 Identities=30% Similarity=0.405 Sum_probs=95.3
Q ss_pred CCCCCCEEEEEEEEEEcCCcEEecccCCCCCeeEEeCCCccccchHHHhccccCCcEEEEEEEcCCCCCCCCCCCCCCCC
Q 013843 61 TPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPP 140 (435)
Q Consensus 61 ~~~~gd~V~v~y~~~~~~g~~~~~s~~~~~p~~~~lg~~~~~~g~~~~l~~m~~G~~~~~~~~ip~~~~yg~~~~~~i~~ 140 (435)
++++||.|++||++++.||++||+|.....|+.|.+|.+++++||++||.+|.+|++.++ .|||+.|||.+++..|..
T Consensus 2 ~i~k~~~V~i~Y~~~~~dg~v~Dtt~e~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V--~IpPE~AfGe~~~~lvq~ 79 (174)
T COG1047 2 KIEKGDVVSLHYTLKVEDGEVVDTTDENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTV--EIPPEDAFGEYDPDLVQR 79 (174)
T ss_pred cccCCCEEEEEEEEEecCCcEEEcccccCCCeEEEecCCCcchhHHHHHhCCCCCceeEE--EeCchHhcCCCChHHeEE
Confidence 578999999999999999999999988669999999999999999999999999999999 999999999998652211
Q ss_pred CCeEEEEE--EEeeeeeeecc-CCCCceEEEEEeccCCCCCCCCCCeEEEEEEEEeCCCceeee
Q 013843 141 NSVVQFEV--ELVSWITVVDL-SKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAK 201 (435)
Q Consensus 141 ~~~l~~~v--~l~~~~~~~d~-~~dg~~~k~ii~~G~g~~~~~~~~~V~v~~~~~~~~g~~v~~ 201 (435)
-+.-.|.- ++ .+...-.. ..++...-+|+.- .++.|+++|||++++.++.|+
T Consensus 80 vp~~~F~~~~~~-~vGm~~~~~~~~~~~~~~V~~V--------~~~~V~VDfNHpLAGktL~fe 134 (174)
T COG1047 80 VPRDEFQGVGEL-EVGMEVEAEGGDGEIPGVVTEV--------SGDRVTVDFNHPLAGKTLHFE 134 (174)
T ss_pred ecHHHhCcCCCC-CCCcEEEEcCCCceeeEEEEEE--------cCCEEEEeCCCcCCCCeEEEE
Confidence 11111100 00 00000011 1222233333332 457999999999999999885
No 19
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.70 E-value=2.1e-16 Score=139.70 Aligned_cols=106 Identities=32% Similarity=0.519 Sum_probs=92.7
Q ss_pred CCCceEEEEEeccCCCCCCCCCCeEEEEEEEEeCCCceeeecCCCCeeEEEEEEEEEEEecCCcEEeecCCCCCCCeEEE
Q 013843 161 KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFI 240 (435)
Q Consensus 161 ~dg~~~k~ii~~G~g~~~~~~~~~V~v~~~~~~~~g~~v~~~~~~~~~~~~~~v~y~~~~~~g~~f~~~~~~~~~p~~~~ 240 (435)
-+.++..+++++|.|. .|..++.|++ ||++++.||++||++ |.+++|++|.
T Consensus 100 t~sGl~y~vi~~G~G~-~p~~~d~V~v---------------------------~Y~g~l~dG~vfdss-~~~g~P~~f~ 150 (206)
T PRK11570 100 TESGLQFRVLTQGEGA-IPARTDRVRV---------------------------HYTGKLIDGTVFDSS-VARGEPAEFP 150 (206)
T ss_pred CCCCcEEEEEeCCCCC-CCCCCCEEEE---------------------------EEEEEECCCCEEEec-cCCCCCeEEE
Confidence 3457888999999995 5777787776 556666788899988 8889999999
Q ss_pred cCCCCcchHHHHHHcccccCcEEEEEEcCCCCCCccccccccccCCCCCeEEEEEEEEEE
Q 013843 241 TDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDF 300 (435)
Q Consensus 241 lg~~~v~~g~~~~l~~m~~Ge~~~i~~~~~~~yg~~~~~~~~~~ip~~~~l~~~iel~~~ 300 (435)
+| .+++||+.+|.+|++|+++.|.||++++||+.+... .|||+++|+|+|+|+++
T Consensus 151 l~--~vipG~~eaL~~M~~G~k~~~~IP~~lAYG~~g~~~---~Ipp~s~Lif~veLl~i 205 (206)
T PRK11570 151 VN--GVIPGWIEALTLMPVGSKWELTIPHELAYGERGAGA---SIPPFSTLVFEVELLEI 205 (206)
T ss_pred ee--chhhHHHHHHcCCCCCCEEEEEECHHHcCCCCCCCC---CcCCCCeEEEEEEEEEE
Confidence 96 699999999999999999999999999999998764 69999999999999886
No 20
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.70 E-value=8.5e-17 Score=139.42 Aligned_cols=123 Identities=16% Similarity=0.179 Sum_probs=94.1
Q ss_pred CCCCCCEEEEEEEEEEcCCcEEecccCCCCCeeEEeCCCccccchHHHhccccCCcEEEEEEEcCCCCCCCCCCCCCCCC
Q 013843 61 TPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPP 140 (435)
Q Consensus 61 ~~~~gd~V~v~y~~~~~~g~~~~~s~~~~~p~~~~lg~~~~~~g~~~~l~~m~~G~~~~~~~~ip~~~~yg~~~~~~i~~ 140 (435)
+++++++|+|+|++++.||++|++|.. +.|+.|.+|.++++|+|+++|.+|++|++++| .|||+.|||.++..
T Consensus 2 kI~~~~vV~l~Y~l~~~dG~v~dst~~-~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v--~l~peeAyGe~d~~---- 74 (196)
T PRK10737 2 KVAKDLVVSLAYQVRTEDGVLVDESPV-SAPLDYLHGHGSLISGLETALEGHEVGDKFDV--AVGANDAYGQYDEN---- 74 (196)
T ss_pred ccCCCCEEEEEEEEEeCCCCEEEecCC-CCCeEEEeCCCcchHHHHHHHcCCCCCCEEEE--EEChHHhcCCCChH----
Confidence 468899999999999999999999976 48999999999999999999999999999999 99999999999754
Q ss_pred CCeEEEEEEEeeee--------eeecc-CCCCceEEEEEeccCCCCCCCCCCeEEEEEEEEeCCCceeee
Q 013843 141 NSVVQFEVELVSWI--------TVVDL-SKDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAK 201 (435)
Q Consensus 141 ~~~l~~~v~l~~~~--------~~~d~-~~dg~~~k~ii~~G~g~~~~~~~~~V~v~~~~~~~~g~~v~~ 201 (435)
++.++....+. ..-.. ..++.+..+|+.- +.+.|+|++|+++++.++.|+
T Consensus 75 ---lV~~vpr~~F~~~~~l~~G~~~~~~~~~G~~~~~V~ev--------~~d~V~vD~NHPLAG~~L~F~ 133 (196)
T PRK10737 75 ---LVQRVPKDVFMGVDELQVGMRFLAETDQGPVPVEITAV--------EDDHVVVDGNHMLAGQNLKFN 133 (196)
T ss_pred ---HEEEecHHHCCCccCCCCCCEEEEeCCCCcEEEEEEEE--------cCCEEEEECCCcCCCCEEEEE
Confidence 22222111111 00011 1333333333332 457899999999999998885
No 21
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.65 E-value=2e-15 Score=130.22 Aligned_cols=107 Identities=21% Similarity=0.265 Sum_probs=85.7
Q ss_pred CCceEEEEEec--cCCCCCCCCCCeEEEEEEEEeCCCceeeecCCCCeeEEEEEEEEEEEecCCcEEeecCCCCCCCeEE
Q 013843 162 DGGIVKKILEK--GERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEF 239 (435)
Q Consensus 162 dg~~~k~ii~~--G~g~~~~~~~~~V~v~~~~~~~~g~~v~~~~~~~~~~~~~~v~y~~~~~~g~~f~~~~~~~~~p~~~ 239 (435)
..++...++.. |+| ..|..++.|++|| ++++.||++|+++ +. ..|++|
T Consensus 68 ~sGl~Y~v~~~~~g~g-~~p~~gd~V~v~Y---------------------------~~~~~dG~v~~ss-~~-~~P~~f 117 (177)
T TIGR03516 68 QNGFWYYYNQKDTGEG-TTPEFGDLVTFEY---------------------------DIRALDGDVIYSE-EE-LGPQTY 117 (177)
T ss_pred CCccEEEEEEecCCCC-CcCCCCCEEEEEE---------------------------EEEeCCCCEEEeC-CC-CCCEEE
Confidence 34455555544 333 3567777777655 5556677777776 44 459999
Q ss_pred EcCCCCcchHHHHHHcccccCcEEEEEEcCCCCCCccccccccccCCCCCeEEEEEEEEEEE
Q 013843 240 ITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFI 301 (435)
Q Consensus 240 ~lg~~~v~~g~~~~l~~m~~Ge~~~i~~~~~~~yg~~~~~~~~~~ip~~~~l~~~iel~~~~ 301 (435)
.+|.+++++||+.+|.+|++||++.|.+|+++|||..+... .||++++|+|+|+|+++.
T Consensus 118 ~vg~~~vi~Gl~e~L~~Mk~Ge~~~~~iP~~~AYG~~g~~~---~Ippns~L~f~IeL~~i~ 176 (177)
T TIGR03516 118 KVDQQDLFSGLRDGLKLMKEGETATFLFPSHKAYGYYGDQN---KIGPNLPIISTVTLLNIK 176 (177)
T ss_pred EeCCcchhHHHHHHHcCCCCCCEEEEEECHHHcCCCCCCCC---CcCcCCcEEEEEEEEEec
Confidence 99999999999999999999999999999999999988664 699999999999999885
No 22
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=2.4e-15 Score=131.65 Aligned_cols=81 Identities=32% Similarity=0.548 Sum_probs=73.4
Q ss_pred EEEEEEec-CCcEEeecCCCCCCCeE-EEcCCCCcchHHHHHHcccccCcEEEEEEcCCCCCCccccccccccCCCCCeE
Q 013843 214 VSYIARLE-DGTVFEKKGYDGEQPLE-FITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKL 291 (435)
Q Consensus 214 v~y~~~~~-~g~~f~~~~~~~~~p~~-~~lg~~~v~~g~~~~l~~m~~Ge~~~i~~~~~~~yg~~~~~~~~~~ip~~~~l 291 (435)
+||.|++. +|.+||++ ..+.|+. |.+|.+.||+||+.++.+|++|.+.+|+|||.++||..+.. .||++++|
T Consensus 143 v~Y~Gkl~~~GkvFd~~--~~~kp~~~f~lg~g~VIkG~d~gv~GMkvGGkRrviIPp~lgYg~~g~~----~IppnstL 216 (226)
T KOG0552|consen 143 VRYIGKLKGNGKVFDSN--FGGKPFKLFRLGSGEVIKGWDVGVEGMKVGGKRRVIIPPELGYGKKGVP----EIPPNSTL 216 (226)
T ss_pred EEEEEEecCCCeEeecc--cCCCCccccccCCCCCCchHHHhhhhhccCCeeEEEeCccccccccCcC----cCCCCCcE
Confidence 35667765 78999987 5678989 99999999999999999999999999999999999999887 49999999
Q ss_pred EEEEEEEEE
Q 013843 292 YYEVEMMDF 300 (435)
Q Consensus 292 ~~~iel~~~ 300 (435)
+|+|+|+.+
T Consensus 217 ~fdVEL~~v 225 (226)
T KOG0552|consen 217 VFDVELLSV 225 (226)
T ss_pred EEEEEEEec
Confidence 999999875
No 23
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=99.63 E-value=5.6e-15 Score=115.18 Aligned_cols=81 Identities=33% Similarity=0.579 Sum_probs=70.3
Q ss_pred EEEEEecCCcEEeecCCCCCCCeEEEcCCCCcchHHHHHHcccccCcEEEEEEcCCCCCCccccccccccCCCCCeEEEE
Q 013843 215 SYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYE 294 (435)
Q Consensus 215 ~y~~~~~~g~~f~~~~~~~~~p~~~~lg~~~v~~g~~~~l~~m~~Ge~~~i~~~~~~~yg~~~~~~~~~~ip~~~~l~~~ 294 (435)
||.+++.+|++|+++ +..+.|++|.+|.+.+++||+.+|.+|+.||++.|.+|++++||+.+... ..||++++++|+
T Consensus 14 ~y~~~~~~g~~~~~~-~~~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~~--~~ip~~~~l~f~ 90 (94)
T PF00254_consen 14 HYTGRLEDGKVFDSS-YQEGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYGEKGLEP--PKIPPNSTLVFE 90 (94)
T ss_dssp EEEEEETTSEEEEET-TTTTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTBCT--TTBTTTSEEEEE
T ss_pred EEEEEECCCcEEEEe-eecCcceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcCccccCC--CCcCCCCeEEEE
Confidence 344444567777777 77889999999999999999999999999999999999999999988743 259999999999
Q ss_pred EEEE
Q 013843 295 VEMM 298 (435)
Q Consensus 295 iel~ 298 (435)
|+|+
T Consensus 91 Iell 94 (94)
T PF00254_consen 91 IELL 94 (94)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 9985
No 24
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=2.1e-15 Score=143.14 Aligned_cols=104 Identities=34% Similarity=0.501 Sum_probs=98.1
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHH
Q 013843 308 EMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAI 387 (435)
Q Consensus 308 ~~~~~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~ 387 (435)
.++.+++.+.+..++.+||.+|+.|+|++||++|.+||+++|..+.+ |.|+|.||..+|+|++.+
T Consensus 105 a~~~e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiF---------------YsNraAcY~~lgd~~~Vi 169 (606)
T KOG0547|consen 105 AMLKEERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIF---------------YSNRAACYESLGDWEKVI 169 (606)
T ss_pred ccChHHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchh---------------hhhHHHHHHHHhhHHHHH
Confidence 35678899999999999999999999999999999999999987655 999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHH
Q 013843 388 ELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKK 426 (435)
Q Consensus 388 ~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~ 426 (435)
++|.+||+++|+++||++|||.++..+|++.+|+.+..-
T Consensus 170 ed~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv 208 (606)
T KOG0547|consen 170 EDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTV 208 (606)
T ss_pred HHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhH
Confidence 999999999999999999999999999999999988753
No 25
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.60 E-value=1.3e-14 Score=133.01 Aligned_cols=108 Identities=30% Similarity=0.516 Sum_probs=93.8
Q ss_pred CCCceEEEEEeccCCCCCCCCCCeEEEEEEEEeCCCceeeecCCCCeeEEEEEEEEEEEecCCcEEeecCCCCCCCeEEE
Q 013843 161 KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFI 240 (435)
Q Consensus 161 ~dg~~~k~ii~~G~g~~~~~~~~~V~v~~~~~~~~g~~v~~~~~~~~~~~~~~v~y~~~~~~g~~f~~~~~~~~~p~~~~ 240 (435)
-+.++.++|+++|.|. .|..+|.|+|+ |.+++.||++||++ +.++.|++|.
T Consensus 144 t~sGl~y~Vi~~G~G~-~p~~gD~V~V~---------------------------Y~g~l~dG~vfdss-~~~g~p~~f~ 194 (269)
T PRK10902 144 TSTGLLYKVEKEGTGE-APKDSDTVVVN---------------------------YKGTLIDGKEFDNS-YTRGEPLSFR 194 (269)
T ss_pred CCCccEEEEEeCCCCC-CCCCCCEEEEE---------------------------EEEEeCCCCEeecc-ccCCCceEEe
Confidence 3567889999999995 67888888765 45666788889888 7888999999
Q ss_pred cCCCCcchHHHHHHcccccCcEEEEEEcCCCCCCccccccccccCCCCCeEEEEEEEEEEEec
Q 013843 241 TDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKE 303 (435)
Q Consensus 241 lg~~~v~~g~~~~l~~m~~Ge~~~i~~~~~~~yg~~~~~~~~~~ip~~~~l~~~iel~~~~~~ 303 (435)
++ .+++||+.+|.+|++|+++.|.||++++||..+.. .||+++.++|+|+|+++...
T Consensus 195 l~--~vipG~~EaL~~Mk~Gek~~l~IP~~laYG~~g~~----gIppns~LvfeVeLl~V~~~ 251 (269)
T PRK10902 195 LD--GVIPGWTEGLKNIKKGGKIKLVIPPELAYGKAGVP----GIPANSTLVFDVELLDVKPA 251 (269)
T ss_pred cC--CcchHHHHHHhcCCCCcEEEEEECchhhCCCCCCC----CCCCCCcEEEEEEEEEeccC
Confidence 95 69999999999999999999999999999998764 49999999999999999753
No 26
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=5e-15 Score=142.52 Aligned_cols=104 Identities=34% Similarity=0.476 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhh
Q 013843 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC 396 (435)
Q Consensus 317 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 396 (435)
.+...+..||.+|+.|+|..|+.+|.+||..+|++. .+|.|+|.||.+++++..|+.+|+.++++
T Consensus 357 ~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da---------------~lYsNRAac~~kL~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 357 KAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDA---------------RLYSNRAACYLKLGEYPEALKDAKKCIEL 421 (539)
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchh---------------HHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 467788889999999999999999999999998875 66999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Q 013843 397 DCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (435)
Q Consensus 397 ~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n~ 435 (435)
+|++.++|+|.|.|+..+.+|++|++.|.+++++||+++
T Consensus 422 ~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~ 460 (539)
T KOG0548|consen 422 DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNA 460 (539)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhH
Confidence 999999999999999999999999999999999999863
No 27
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.58 E-value=5.9e-15 Score=134.47 Aligned_cols=109 Identities=32% Similarity=0.418 Sum_probs=103.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHH
Q 013843 311 NQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELC 390 (435)
Q Consensus 311 ~~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~ 390 (435)
.++.+..+..++++||.||++|+|++||.+|.+++...|.++.. +.|+|.+|+++++|..|..+|
T Consensus 90 ~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~---------------~~NRA~AYlk~K~FA~AE~DC 154 (536)
T KOG4648|consen 90 AQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVY---------------HINRALAYLKQKSFAQAEEDC 154 (536)
T ss_pred HHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccc---------------hhhHHHHHHHHHHHHHHHHhH
Confidence 45678888899999999999999999999999999999988744 899999999999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 013843 391 SKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 391 ~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
..|+.+|..+.+||-|++.+...+|+..+|.++++.+|+|+|++
T Consensus 155 ~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 155 EAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCccc
Confidence 99999999999999999999999999999999999999999975
No 28
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.51 E-value=2.3e-13 Score=114.80 Aligned_cols=101 Identities=18% Similarity=0.213 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 013843 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCH 399 (435)
Q Consensus 320 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~ 399 (435)
.+...|..++..|+|++|+..|++++.+.|.+. .+++++|.++.++|++++|+..|+++++++|+
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~---------------~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~ 90 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSW---------------RAHIALAGTWMMLKEYTTAINFYGHALMLDAS 90 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH---------------HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 366789999999999999999999999988764 56999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Q 013843 400 NVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (435)
Q Consensus 400 ~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n~ 435 (435)
++.+++++|.++..+|++++|+..|.++++++|+|.
T Consensus 91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~ 126 (144)
T PRK15359 91 HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADA 126 (144)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence 999999999999999999999999999999999873
No 29
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.51 E-value=1.5e-13 Score=133.52 Aligned_cols=102 Identities=19% Similarity=0.300 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 013843 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDC 398 (435)
Q Consensus 319 ~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p 398 (435)
..++.+|+.+|..|+|+.|+.+|.+||++.|.+. .+|+++|.||+++++|++|+.++++|++++|
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~---------------~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P 67 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNA---------------ELYADRAQANIKLGNFTEAVADANKAIELDP 67 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 4578899999999999999999999999988764 5699999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Q 013843 399 HNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (435)
Q Consensus 399 ~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n~ 435 (435)
+++.+|+++|.+|+.+|+|++|+.+|+++++++|+|+
T Consensus 68 ~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~ 104 (356)
T PLN03088 68 SLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDS 104 (356)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence 9999999999999999999999999999999999874
No 30
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.50 E-value=2.5e-13 Score=142.27 Aligned_cols=132 Identities=28% Similarity=0.360 Sum_probs=113.9
Q ss_pred CCCCCeEEEEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHH
Q 013843 285 IPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKS 364 (435)
Q Consensus 285 ip~~~~l~~~iel~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~ 364 (435)
.|+...+....++..+. ....|.++.+++...+..+++.|+.+|+.|+|++|+..|+++|.+.|. +
T Consensus 95 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~------------ 160 (615)
T TIGR00990 95 APKNAPVEPADELPEID-ESSVANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-P------------ 160 (615)
T ss_pred CCCCCCCCccccccccc-hhhcccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-h------------
Confidence 44444444444544433 355689999999999999999999999999999999999999998874 2
Q ss_pred HHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q 013843 365 LRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQ 433 (435)
Q Consensus 365 ~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~ 433 (435)
..|+|+|.||.++++|++|+.+|+++|+++|++.++|+++|.+|..+|++++|+.+|.+++.+++.
T Consensus 161 ---~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~ 226 (615)
T TIGR00990 161 ---VYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGF 226 (615)
T ss_pred ---HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 359999999999999999999999999999999999999999999999999999999888777653
No 31
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=2.2e-13 Score=123.94 Aligned_cols=108 Identities=29% Similarity=0.370 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHH
Q 013843 315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVL 394 (435)
Q Consensus 315 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 394 (435)
-+.|+.+++.||.||+.++|..|+..|.++|+..-.++ .+.+.+|.|+|.|++.+++|..|+++|.+|+
T Consensus 78 ~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~-----------dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al 146 (390)
T KOG0551|consen 78 HEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADP-----------DLNAVLYTNRAAAQLYLGNYRSALNDCSAAL 146 (390)
T ss_pred HHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCc-----------cHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34899999999999999999999999999999876665 3478999999999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q 013843 395 DCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQ 433 (435)
Q Consensus 395 ~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~ 433 (435)
.++|.+.||++|-|.|++.|.++.+|..+++..++++-.
T Consensus 147 ~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 147 KLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred hcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 999999999999999999999999999999988877643
No 32
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=2.1e-13 Score=131.39 Aligned_cols=103 Identities=25% Similarity=0.329 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhC
Q 013843 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD 397 (435)
Q Consensus 318 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 397 (435)
+..+++.||.+|..|+|+.|+.+|..||.+.|.+. .+|.|++.||.++++|++|+.+..+..+++
T Consensus 2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nh---------------vlySnrsaa~a~~~~~~~al~da~k~~~l~ 66 (539)
T KOG0548|consen 2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNH---------------VLYSNRSAAYASLGSYEKALKDATKTRRLN 66 (539)
T ss_pred hhHHHHHHHhhcccccHHHHHHHHHHHHccCCCcc---------------chhcchHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 45788999999999999999999999999999865 459999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Q 013843 398 CHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (435)
Q Consensus 398 p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n~ 435 (435)
|+.+++|.|+|.+++.+|+|++|+..|.+.|+.+|+|+
T Consensus 67 p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~ 104 (539)
T KOG0548|consen 67 PDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNK 104 (539)
T ss_pred CchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchH
Confidence 99999999999999999999999999999999999984
No 33
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=3.6e-13 Score=125.80 Aligned_cols=110 Identities=28% Similarity=0.346 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHH
Q 013843 313 GKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSK 392 (435)
Q Consensus 313 ~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 392 (435)
-..+....+++.||.+|+.|+|..|.+.|..||.++|.+... .+.+|.|+|.++.++|+..+|+.+|+.
T Consensus 244 ~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~-----------naklY~nra~v~~rLgrl~eaisdc~~ 312 (486)
T KOG0550|consen 244 MMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKT-----------NAKLYGNRALVNIRLGRLREAISDCNE 312 (486)
T ss_pred hhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccch-----------hHHHHHHhHhhhcccCCchhhhhhhhh
Confidence 456778899999999999999999999999999999986533 678999999999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q 013843 393 VLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQ 433 (435)
Q Consensus 393 al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~ 433 (435)
|+++||...+||.++|.||+.+++|++|.++|++|++++-+
T Consensus 313 Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 313 ALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999998643
No 34
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.44 E-value=1.4e-12 Score=108.45 Aligned_cols=101 Identities=13% Similarity=0.190 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHh
Q 013843 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD 395 (435)
Q Consensus 316 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 395 (435)
+..+.++..|..++..|+++.|...|+-...++|.+. ..|+|+|.|+..+|+|.+|+..|.+|+.
T Consensus 33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~---------------~y~~gLG~~~Q~~g~~~~AI~aY~~A~~ 97 (157)
T PRK15363 33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSF---------------DYWFRLGECCQAQKHWGEAIYAYGRAAQ 97 (157)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH---------------HHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 4567889999999999999999999999999998875 4499999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Q 013843 396 CDCHNVKALYRRAQAYMEIADLILAELDIKKAIEAD 431 (435)
Q Consensus 396 ~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~ 431 (435)
++|+++.++++.|.|++.+|+.+.|++.|+.|+..-
T Consensus 98 L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 98 IKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999875
No 35
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.37 E-value=9.8e-12 Score=103.69 Aligned_cols=104 Identities=23% Similarity=0.346 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhh
Q 013843 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC 396 (435)
Q Consensus 317 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 396 (435)
........|..++..|+|++|+..|++++...|.+. .++.++|.|+.+++++.+|+..++++++.
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~---------------~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNS---------------RYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346688999999999999999999999999887654 56899999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Q 013843 397 DCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (435)
Q Consensus 397 ~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n~ 435 (435)
+|.++..++.+|.++..+|++++|+..|+++++++|++.
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 119 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENP 119 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 999999999999999999999999999999999999863
No 36
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.35 E-value=1.3e-11 Score=117.29 Aligned_cols=105 Identities=20% Similarity=0.147 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHh
Q 013843 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD 395 (435)
Q Consensus 316 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 395 (435)
..+..+.++|..+...|++++|+..|++++++.|.+. .+|+++|.++..+|++++|+..++++++
T Consensus 62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~---------------~a~~~lg~~~~~~g~~~~A~~~~~~Al~ 126 (296)
T PRK11189 62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMA---------------DAYNYLGIYLTQAGNFDAAYEAFDSVLE 126 (296)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH---------------HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4467799999999999999999999999999988764 6699999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Q 013843 396 CDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (435)
Q Consensus 396 ~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n~ 435 (435)
++|++..+|+++|.++...|++++|+++|+++++++|+|+
T Consensus 127 l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~ 166 (296)
T PRK11189 127 LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP 166 (296)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 9999999999999999999999999999999999999873
No 37
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.33 E-value=5.7e-12 Score=92.03 Aligned_cols=66 Identities=33% Similarity=0.527 Sum_probs=63.9
Q ss_pred HHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHhCC
Q 013843 367 VSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIA-DLILAELDIKKAIEADP 432 (435)
Q Consensus 367 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg-~~~eA~~~~~~al~l~P 432 (435)
+.++.++|.+++.+++|++|+.+|+++++++|+++.+|+++|.++..+| ++++|+++|+++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4568999999999999999999999999999999999999999999999 89999999999999998
No 38
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.32 E-value=1.1e-11 Score=104.87 Aligned_cols=64 Identities=20% Similarity=0.358 Sum_probs=58.2
Q ss_pred EEEEEEecCCcEEeecCCCCCCCeEEEcCCCCcchHHHHHHcccccCcEEEEEEcCCCCCCcccc
Q 013843 214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEA 278 (435)
Q Consensus 214 v~y~~~~~~g~~f~~~~~~~~~p~~~~lg~~~v~~g~~~~l~~m~~Ge~~~i~~~~~~~yg~~~~ 278 (435)
+||++++.||++||++ +..+.|+.|.+|.+++++||+.+|.+|++|++..|.|||+.+||+.+.
T Consensus 13 v~Y~~~~~dG~v~dst-~~~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~d~ 76 (156)
T PRK15095 13 VHFTLKLDDGSTAEST-RNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVPSP 76 (156)
T ss_pred EEEEEEeCCCCEEEEC-CCCCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCCh
Confidence 5777888889999998 667899999999999999999999999999999999999999997653
No 39
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=6.1e-12 Score=109.71 Aligned_cols=101 Identities=30% Similarity=0.326 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHh
Q 013843 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD 395 (435)
Q Consensus 316 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 395 (435)
..+..+++.||.+|....|..|+..|.+||.+.|....+ |.|+|.||+++++|+.+..+|.+|++
T Consensus 8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y---------------~tnralchlk~~~~~~v~~dcrralq 72 (284)
T KOG4642|consen 8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASY---------------YTNRALCHLKLKHWEPVEEDCRRALQ 72 (284)
T ss_pred hHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchh---------------hhhHHHHHHHhhhhhhhhhhHHHHHh
Confidence 457889999999999999999999999999999987544 89999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Q 013843 396 CDCHNVKALYRRAQAYMEIADLILAELDIKKAIEAD 431 (435)
Q Consensus 396 ~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~ 431 (435)
++|+.++++|.+|.+++....|++|+..+.+|+.+-
T Consensus 73 l~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~ 108 (284)
T KOG4642|consen 73 LDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLL 108 (284)
T ss_pred cChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence 999999999999999999999999999999997664
No 40
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.26 E-value=8.6e-11 Score=104.47 Aligned_cols=103 Identities=18% Similarity=0.150 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHH-HHccC--HHHHHHHHHHH
Q 013843 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACC-LKLKD--YQGAIELCSKV 393 (435)
Q Consensus 317 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~-~~~~~--~~~A~~~~~~a 393 (435)
.+..+...|..+...|+|+.|+..|++++++.|.+. .+++++|.++ ...|+ +.+|...++++
T Consensus 72 ~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~---------------~~~~~lA~aL~~~~g~~~~~~A~~~l~~a 136 (198)
T PRK10370 72 NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENA---------------ELYAALATVLYYQAGQHMTPQTREMIDKA 136 (198)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 355788899999999999999999999999999865 5689999985 67787 59999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 013843 394 LDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 394 l~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
++.+|+++.+++.+|.+++.+|+|++|+.+++++++++|.+
T Consensus 137 l~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 137 LALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred HHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 99999999999999999999999999999999999999865
No 41
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.24 E-value=2e-10 Score=93.10 Aligned_cols=106 Identities=14% Similarity=0.118 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhC
Q 013843 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD 397 (435)
Q Consensus 318 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 397 (435)
++.+...|..+++.|+|++|+..|.+++...|.+... ..+++++|.++.+.+++++|+..+++++..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 69 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYA------------PNAHYWLGEAYYAQGKYADAAKAFLAVVKKY 69 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcccc------------HHHHHHHHHHHHhhccHHHHHHHHHHHHHHC
Confidence 3567899999999999999999999999987764321 3568899999999999999999999999999
Q ss_pred CCC---HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Q 013843 398 CHN---VKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (435)
Q Consensus 398 p~~---~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n~ 435 (435)
|++ ..+++.+|.++..++++++|+..++++++..|++.
T Consensus 70 p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 70 PKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred CCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCCh
Confidence 885 67899999999999999999999999999999863
No 42
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.23 E-value=2.1e-10 Score=99.99 Aligned_cols=110 Identities=21% Similarity=0.178 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHH
Q 013843 313 GKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSK 392 (435)
Q Consensus 313 ~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 392 (435)
.....+..+...|..+...|+|++|+.+|++++...+.... ...++.++|.++.++|++++|+..+.+
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~------------~~~~~~~la~~~~~~g~~~~A~~~~~~ 97 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPND------------RSYILYNMGIIYASNGEHDKALEYYHQ 97 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccch------------HHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45567788999999999999999999999999998764321 245789999999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHhccc--------------HHHHHHHHHHHHHhCCCC
Q 013843 393 VLDCDCHNVKALYRRAQAYMEIAD--------------LILAELDIKKAIEADPQN 434 (435)
Q Consensus 393 al~~~p~~~~a~~~~a~~~~~lg~--------------~~eA~~~~~~al~l~P~n 434 (435)
++..+|.+..+++.+|.++..+++ +++|++.+++++.++|+|
T Consensus 98 al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 98 ALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 999999999999999999999988 688999999999999975
No 43
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=99.19 E-value=1.6e-11 Score=117.66 Aligned_cols=104 Identities=27% Similarity=0.371 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhh
Q 013843 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC 396 (435)
Q Consensus 317 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 396 (435)
.+..++++|+.+|+.+.|+.|+..|.+||++.|++..+ +.|+|+++++.++|..|+.++.+|+++
T Consensus 3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~---------------~anRa~a~lK~e~~~~Al~Da~kaie~ 67 (476)
T KOG0376|consen 3 SAEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIY---------------FANRALAHLKVESFGGALHDALKAIEL 67 (476)
T ss_pred hhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceee---------------echhhhhheeechhhhHHHHHHhhhhc
Confidence 46788999999999999999999999999999987644 889999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Q 013843 397 DCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (435)
Q Consensus 397 ~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n~ 435 (435)
+|...++|+|+|.+++.++++.+|+.+|++...+.|+++
T Consensus 68 dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~ 106 (476)
T KOG0376|consen 68 DPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDP 106 (476)
T ss_pred CchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcH
Confidence 999999999999999999999999999999999999874
No 44
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.17 E-value=1.3e-10 Score=113.71 Aligned_cols=103 Identities=24% Similarity=0.240 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHH
Q 013843 315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVL 394 (435)
Q Consensus 315 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 394 (435)
...++++.+.||.+..+|.++.|..+|.++++..|... .+++|+|.+|..+|++++|+.+|+.||
T Consensus 351 p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~a---------------aa~nNLa~i~kqqgnl~~Ai~~Ykeal 415 (966)
T KOG4626|consen 351 PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFA---------------AAHNNLASIYKQQGNLDDAIMCYKEAL 415 (966)
T ss_pred CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhh---------------hhhhhHHHHHHhcccHHHHHHHHHHHH
Confidence 35677778888888888888888888888887776532 334444444444444444444444444
Q ss_pred hhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC
Q 013843 395 DCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADP 432 (435)
Q Consensus 395 ~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P 432 (435)
.++|..+.+|.++|..|..+|+.+.|+++|.+|+.++|
T Consensus 416 rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nP 453 (966)
T KOG4626|consen 416 RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINP 453 (966)
T ss_pred hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCc
Confidence 44444444444444444444444444444444444444
No 45
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.16 E-value=1.2e-10 Score=113.93 Aligned_cols=99 Identities=14% Similarity=0.154 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 013843 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCH 399 (435)
Q Consensus 320 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~ 399 (435)
.+.+.|..|-++|++++|+.+|++||++.|.- +.+|.|+|..|..+|+...|+.+|.+|+.++|.
T Consensus 390 a~nNLa~i~kqqgnl~~Ai~~YkealrI~P~f---------------Ada~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt 454 (966)
T KOG4626|consen 390 AHNNLASIYKQQGNLDDAIMCYKEALRIKPTF---------------ADALSNMGNTYKEMGDVSAAIQCYTRAIQINPT 454 (966)
T ss_pred hhhhHHHHHHhcccHHHHHHHHHHHHhcCchH---------------HHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcH
Confidence 34444444444555555555555555444331 233445555555555555555555555555555
Q ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q 013843 400 NVKALYRRAQAYMEIADLILAELDIKKAIEADPQ 433 (435)
Q Consensus 400 ~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~ 433 (435)
.+.|+-++|.+|...|+..+|++.|+.||+++|+
T Consensus 455 ~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD 488 (966)
T KOG4626|consen 455 FAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD 488 (966)
T ss_pred HHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC
Confidence 5555555555555555555555555555555444
No 46
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.15 E-value=1.5e-10 Score=88.10 Aligned_cols=83 Identities=29% Similarity=0.358 Sum_probs=73.5
Q ss_pred cCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 013843 331 NGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQA 410 (435)
Q Consensus 331 ~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~ 410 (435)
+|+|+.|+..|+++++..|.+. ....++++|.||+++++|++|+..+++ ++.++.+...++.+|.|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~-------------~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~ 67 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNP-------------NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARC 67 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTH-------------HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCCh-------------hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHH
Confidence 6899999999999999998632 135688899999999999999999999 99999999999999999
Q ss_pred HHhcccHHHHHHHHHHH
Q 013843 411 YMEIADLILAELDIKKA 427 (435)
Q Consensus 411 ~~~lg~~~eA~~~~~~a 427 (435)
+..+|+|++|+..|+++
T Consensus 68 ~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 68 LLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHTT-HHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHhcC
Confidence 99999999999999875
No 47
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.15 E-value=1.1e-10 Score=84.09 Aligned_cols=65 Identities=25% Similarity=0.234 Sum_probs=60.9
Q ss_pred hHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Q 013843 371 LNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (435)
Q Consensus 371 ~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n~ 435 (435)
+.+|..+++.|+|++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++++|+|+
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999984
No 48
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.15 E-value=9.9e-10 Score=95.33 Aligned_cols=110 Identities=21% Similarity=0.092 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHH
Q 013843 313 GKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSK 392 (435)
Q Consensus 313 ~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 392 (435)
.....+..+...|..++..|+|++|+..|++++.+.+.... ...+++|+|.++.+++++++|+.+|.+
T Consensus 30 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~------------~~~~~~~lg~~~~~~g~~~eA~~~~~~ 97 (168)
T CHL00033 30 SGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYD------------RSYILYNIGLIHTSNGEHTKALEYYFQ 97 (168)
T ss_pred chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchh------------hHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34457888999999999999999999999999998654221 245799999999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHH-------hcccHH-------HHHHHHHHHHHhCCCC
Q 013843 393 VLDCDCHNVKALYRRAQAYM-------EIADLI-------LAELDIKKAIEADPQN 434 (435)
Q Consensus 393 al~~~p~~~~a~~~~a~~~~-------~lg~~~-------eA~~~~~~al~l~P~n 434 (435)
++.++|.+..++.++|.++. .+|+++ +|+..|++++.++|.+
T Consensus 98 Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 98 ALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 99999999999999999999 777766 6677777788888864
No 49
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.13 E-value=7.4e-10 Score=84.64 Aligned_cols=99 Identities=33% Similarity=0.445 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 013843 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCH 399 (435)
Q Consensus 320 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~ 399 (435)
.+...|..++..|++++|+..|.++++..|... .+++++|.++...+++++|+.++.+++...|.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 66 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNA---------------DAYYNLAAAYYKLGKYEEALEDYEKALELDPD 66 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 467889999999999999999999999876542 55889999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q 013843 400 NVKALYRRAQAYMEIADLILAELDIKKAIEADPQ 433 (435)
Q Consensus 400 ~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~ 433 (435)
+..+++.+|.++..++++++|...+.++++++|+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 67 NAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 9999999999999999999999999999998874
No 50
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.11 E-value=8.1e-10 Score=115.85 Aligned_cols=102 Identities=24% Similarity=0.230 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhh
Q 013843 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC 396 (435)
Q Consensus 317 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 396 (435)
.+..+...|..++..|++++|+..|++++++.|... .+|+++|.++..++++++|+.++++++++
T Consensus 330 ~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~---------------~~~~~la~~~~~~g~~~eA~~~~~~al~~ 394 (615)
T TIGR00990 330 EAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVT---------------QSYIKRASMNLELGDPDKAEEDFDKALKL 394 (615)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH---------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 445677788888899999999999999998877543 23445555555555555555555555555
Q ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q 013843 397 DCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQ 433 (435)
Q Consensus 397 ~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~ 433 (435)
+|+++.+|+.+|.++..+|++++|+.+|+++++++|+
T Consensus 395 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~ 431 (615)
T TIGR00990 395 NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD 431 (615)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc
Confidence 5555555555555555555555555555555555554
No 51
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=7.4e-10 Score=93.24 Aligned_cols=64 Identities=30% Similarity=0.457 Sum_probs=56.5
Q ss_pred EEEEEEecCCcEEeecCCCCCCCeEEEcCCCCcchHHHHHHcccccCcEEEEEEcCCCCCCcccc
Q 013843 214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEA 278 (435)
Q Consensus 214 v~y~~~~~~g~~f~~~~~~~~~p~~~~lg~~~v~~g~~~~l~~m~~Ge~~~i~~~~~~~yg~~~~ 278 (435)
++|+.++.||++||++ .....|+.|.+|.+++++||+.||.+|.+||+..|.|||+-|||....
T Consensus 11 i~Y~~~~~dg~v~Dtt-~e~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~~~ 74 (174)
T COG1047 11 LHYTLKVEDGEVVDTT-DENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGEYDP 74 (174)
T ss_pred EEEEEEecCCcEEEcc-cccCCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCCCCh
Confidence 5677777778888887 344789999999999999999999999999999999999999998754
No 52
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.07 E-value=3e-10 Score=82.82 Aligned_cols=67 Identities=30% Similarity=0.412 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHcc-CHHHHHHHHHHHHh
Q 013843 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK-DYQGAIELCSKVLD 395 (435)
Q Consensus 317 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~-~~~~A~~~~~~al~ 395 (435)
.+..+...|..++..|+|++|+..|.++++++|.+ ..+++++|.||.+++ ++.+|+.+++++++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~---------------~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN---------------AEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH---------------HHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---------------HHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 36789999999999999999999999999998875 367999999999999 79999999999999
Q ss_pred hCC
Q 013843 396 CDC 398 (435)
Q Consensus 396 ~~p 398 (435)
++|
T Consensus 67 l~P 69 (69)
T PF13414_consen 67 LDP 69 (69)
T ss_dssp HST
T ss_pred cCc
Confidence 998
No 53
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.07 E-value=4.7e-10 Score=102.89 Aligned_cols=104 Identities=20% Similarity=0.281 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHh
Q 013843 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD 395 (435)
Q Consensus 316 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 395 (435)
..++.+.+.|+.++.+|+|..|+.+|-.|++.+|++. .+++.+|.+|+.+|+-..|+.++.++|+
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y---------------~aifrRaT~yLAmGksk~al~Dl~rVle 100 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNY---------------QAIFRRATVYLAMGKSKAALQDLSRVLE 100 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhH---------------HHHHHHHHHHhhhcCCccchhhHHHHHh
Confidence 5678899999999999999999999999999998764 5689999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 013843 396 CDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 396 ~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
+.|+..-|...+|.+++++|++++|.++|+++|..+|+|
T Consensus 101 lKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~ 139 (504)
T KOG0624|consen 101 LKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSN 139 (504)
T ss_pred cCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCc
Confidence 999999999999999999999999999999999999975
No 54
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.04 E-value=3e-09 Score=92.91 Aligned_cols=101 Identities=21% Similarity=0.095 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHH
Q 013843 313 GKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSK 392 (435)
Q Consensus 313 ~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 392 (435)
..-..+....++|..|+..|++..|...+++||+.+|+.. .+|.-+|..|.++|+.+.|.+.|++
T Consensus 30 ~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~---------------~a~~~~A~~Yq~~Ge~~~A~e~Yrk 94 (250)
T COG3063 30 DRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYY---------------LAHLVRAHYYQKLGENDLADESYRK 94 (250)
T ss_pred cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH---------------HHHHHHHHHHHHcCChhhHHHHHHH
Confidence 4456778889999999999999999999999999998765 4578888888888888888888888
Q ss_pred HHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 013843 393 VLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAI 428 (435)
Q Consensus 393 al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al 428 (435)
|+.++|++...+.+-|--++.+|++++|..+|++|+
T Consensus 95 Alsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al 130 (250)
T COG3063 95 ALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERAL 130 (250)
T ss_pred HHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHH
Confidence 888888876555555555555555555555555444
No 55
>PRK15331 chaperone protein SicA; Provisional
Probab=99.03 E-value=2e-09 Score=90.12 Aligned_cols=99 Identities=12% Similarity=0.101 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHh
Q 013843 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD 395 (435)
Q Consensus 316 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 395 (435)
+..+..+..|..+|..|+|+.|...|+-...+++.+. ..++.+|.|+..+++|++|+..|..|..
T Consensus 35 ~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~---------------~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~ 99 (165)
T PRK15331 35 DMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNP---------------DYTMGLAAVCQLKKQFQKACDLYAVAFT 99 (165)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788999999999999999999999988887765 3489999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 013843 396 CDCHNVKALYRRAQAYMEIADLILAELDIKKAIE 429 (435)
Q Consensus 396 ~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~ 429 (435)
++++++...|+.|.|++.+|+.++|+.+|..++.
T Consensus 100 l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 100 LLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred cccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999987
No 56
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.02 E-value=1.8e-09 Score=93.99 Aligned_cols=63 Identities=19% Similarity=0.417 Sum_probs=54.6
Q ss_pred EEEEEEecCCcEEeecCCCCCCCeEEEcCCCCcchHHHHHHcccccCcEEEEEEcCCCCCCcccc
Q 013843 214 VSYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEA 278 (435)
Q Consensus 214 v~y~~~~~~g~~f~~~~~~~~~p~~~~lg~~~v~~g~~~~l~~m~~Ge~~~i~~~~~~~yg~~~~ 278 (435)
++|+.++.||++||++ ....|++|.+|.++++|+|+.+|.+|.+|++..|.++|+.|||+...
T Consensus 11 l~Y~l~~~dG~v~dst--~~~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~d~ 73 (196)
T PRK10737 11 LAYQVRTEDGVLVDES--PVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYDE 73 (196)
T ss_pred EEEEEEeCCCCEEEec--CCCCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCCCCh
Confidence 4666666677777777 34789999999999999999999999999999999999999997654
No 57
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.02 E-value=6.4e-10 Score=108.55 Aligned_cols=99 Identities=17% Similarity=0.190 Sum_probs=92.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 013843 321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN 400 (435)
Q Consensus 321 ~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~ 400 (435)
..-+|..|+-.|+|++|+.+|+.||...|++. .+|+.+|..+..-.+..+|+..|++||++.|.+
T Consensus 433 Q~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~---------------~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y 497 (579)
T KOG1125|consen 433 QSGLGVLYNLSGEFDRAVDCFEAALQVKPNDY---------------LLWNRLGATLANGNRSEEAISAYNRALQLQPGY 497 (579)
T ss_pred HhhhHHHHhcchHHHHHHHHHHHHHhcCCchH---------------HHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe
Confidence 34468889999999999999999999999886 569999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 013843 401 VKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 401 ~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
+++.|++|.+++.+|.|++|..+|-.||.+.+.+
T Consensus 498 VR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks 531 (579)
T KOG1125|consen 498 VRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKS 531 (579)
T ss_pred eeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcc
Confidence 9999999999999999999999999999998763
No 58
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.01 E-value=3.4e-09 Score=114.69 Aligned_cols=102 Identities=8% Similarity=-0.009 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhC
Q 013843 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD 397 (435)
Q Consensus 318 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 397 (435)
...+.+.|..+.+.|++++|+..|++++.+.|.+. .+++|+|.++..+|++++|+..|+++++++
T Consensus 609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~---------------~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~ 673 (987)
T PRK09782 609 ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNS---------------NYQAALGYALWDSGDIAQSREMLERAHKGL 673 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 34566778888888888888888888888887764 568999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 013843 398 CHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 398 p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
|+++.+++++|.++..+|++++|+..|+++++++|++
T Consensus 674 P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~ 710 (987)
T PRK09782 674 PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQ 710 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999999999999976
No 59
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.00 E-value=4.7e-09 Score=96.27 Aligned_cols=107 Identities=19% Similarity=0.135 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHh
Q 013843 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD 395 (435)
Q Consensus 316 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 395 (435)
..+..+...|..+++.|+|+.|+..|++++...|.++. ...+++++|.+|.++++|++|+..++++++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~------------~~~a~~~la~~~~~~~~~~~A~~~~~~~l~ 98 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPY------------AEQAQLDLAYAYYKSGDYAEAIAAADRFIR 98 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchh------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999886542 235689999999999999999999999999
Q ss_pred hCCCCHH---HHHHHHHHHHhc--------ccHHHHHHHHHHHHHhCCCC
Q 013843 396 CDCHNVK---ALYRRAQAYMEI--------ADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 396 ~~p~~~~---a~~~~a~~~~~l--------g~~~eA~~~~~~al~l~P~n 434 (435)
..|+++. +++.+|.++..+ +++++|++.|++++..+|++
T Consensus 99 ~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 148 (235)
T TIGR03302 99 LHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNS 148 (235)
T ss_pred HCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCC
Confidence 9998876 799999999987 89999999999999999986
No 60
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=4.8e-10 Score=98.31 Aligned_cols=255 Identities=17% Similarity=0.183 Sum_probs=160.3
Q ss_pred ecCCCeEEEEEecCCCCCCC--CCCCEEEEEEEEEEc--CCcEEecccCCCCCeeEEeCCCccccchHHHhccccCCcEE
Q 013843 43 LGNSGIKKKLLKNGVDWDTP--EFGDEVTIHYVGTLL--DGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECA 118 (435)
Q Consensus 43 ~~~~g~~~~~~~~g~g~~~~--~~gd~V~v~y~~~~~--~g~~~~~s~~~~~p~~~~lg~~~~~~g~~~~l~~m~~G~~~ 118 (435)
+.-.||++.|+..|+| +-| ..|..|++||..... .++++|+|+.-|.|+.+++|+---++-|+..|..|+++|.+
T Consensus 7 l~~~gv~Kril~~G~g-~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk~gkPmeiiiGkkFkL~VwE~il~tM~v~Eva 85 (329)
T KOG0545|consen 7 LNVEGVKKRILHGGTG-ELPEFIDGTRVIFHFRTLKCDEERTVIDDSRKVGKPMEIIIGKKFKLEVWEIILTTMRVHEVA 85 (329)
T ss_pred ccchhhhHhhccCCCc-cCccccCCceEEEEEEecccCcccccccchhhcCCCeEEeeccccccHHHHHHHHHHhhhhHH
Confidence 4557899999999999 655 589999999988776 46799999999999999999988999999999999999999
Q ss_pred EEEEEcCCC--------------CCCCCC--------------------C---CC-CCCCCCeEEEEEEEeeeeeeeccC
Q 013843 119 VFTFTLPSE--------------LRFGVE--------------------G---RD-SLPPNSVVQFEVELVSWITVVDLS 160 (435)
Q Consensus 119 ~~~~~ip~~--------------~~yg~~--------------------~---~~-~i~~~~~l~~~v~l~~~~~~~d~~ 160 (435)
.| +|.-- .+-|.. | .. ....-++|+|.|+|+.+..+.+..
T Consensus 86 qF--~~d~~~~vqYPfvsksLRdia~GK~p~e~~~H~Cg~a~m~~~~glGyedLDeL~knPqpL~FviellqVe~P~qYq 163 (329)
T KOG0545|consen 86 QF--WCDTIHTVQYPFVSKSLRDIAQGKDPTEWHRHCCGLANMFAYHGLGYEDLDELQKNPQPLVFVIELLQVEAPSQYQ 163 (329)
T ss_pred Hh--hhhhhheeechhHHHHHHHHhcCCCcchhhhhhhhhHHHHHhcCCChhhHHHHhhCCCceEeehhhhhccCchhhc
Confidence 98 44321 111111 0 00 111126799999998887555432
Q ss_pred CCCceEEEEEeccCCCCCCCCCCeEEEEEEEEeCCCceeeecCCCCeeEEEEEEEEEEEecCCcEEeecCCCCCCCeEEE
Q 013843 161 KDGGIVKKILEKGERDASPGDLDEVLVKYQVMLGDGTMVAKTPEEGVEFYLKDVSYIARLEDGTVFEKKGYDGEQPLEFI 240 (435)
Q Consensus 161 ~dg~~~k~ii~~G~g~~~~~~~~~V~v~~~~~~~~g~~v~~~~~~~~~~~~~~v~y~~~~~~g~~f~~~~~~~~~p~~~~ 240 (435)
.+. |....+ ++..- ....-..|+-. |.
T Consensus 164 ~e~------------Wqlsdd-eKmka-v~~l~q~GN~l---------------------------------------fk 190 (329)
T KOG0545|consen 164 RET------------WQLSDD-EKMKA-VPVLHQEGNRL---------------------------------------FK 190 (329)
T ss_pred ccc------------ccCCch-Hhhhh-hHHHHHhhhhh---------------------------------------hh
Confidence 210 100000 00000 00000000000 11
Q ss_pred cCCC-CcchHHHH---HHcccccCcEEEEEEcCCCCCCccccccccccCCCCCeEEEEEEEEEEEecCCCCCCChHHHHH
Q 013843 241 TDEE-QVIAGLDR---VAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYEVEMMDFIKEKVPWEMNNQGKIE 316 (435)
Q Consensus 241 lg~~-~v~~g~~~---~l~~m~~Ge~~~i~~~~~~~yg~~~~~~~~~~ip~~~~l~~~iel~~~~~~~~~~~~~~~~~~~ 316 (435)
.|+. .-...... +|..+...|+ |+ .+.|. +---.
T Consensus 191 ~~~ykEA~~~YreAi~~l~~L~lkEk------------------------P~---------------e~eW~---eLdk~ 228 (329)
T KOG0545|consen 191 LGRYKEASSKYREAIICLRNLQLKEK------------------------PG---------------EPEWL---ELDKM 228 (329)
T ss_pred hccHHHHHHHHHHHHHHHHHHHhccC------------------------CC---------------ChHHH---HHHHh
Confidence 1111 11111111 1222111110 00 00111 11112
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhh
Q 013843 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC 396 (435)
Q Consensus 317 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 396 (435)
..-.+.+....++..++|-+++++....|...|.+ ..+|+.+|.++...=+.++|..++.++|++
T Consensus 229 ~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~n---------------vKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 229 ITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGN---------------VKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred hhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCch---------------HHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 33456778889999999999999999999988765 477999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHH
Q 013843 397 DCHNVKALYRRAQA 410 (435)
Q Consensus 397 ~p~~~~a~~~~a~~ 410 (435)
+|.-..+--+--.+
T Consensus 294 dpslasvVsrElr~ 307 (329)
T KOG0545|consen 294 DPSLASVVSRELRL 307 (329)
T ss_pred ChhhHHHHHHHHHH
Confidence 99877665543333
No 61
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=2.2e-09 Score=102.82 Aligned_cols=105 Identities=23% Similarity=0.200 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHH
Q 013843 315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVL 394 (435)
Q Consensus 315 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 394 (435)
...+..+.-.|..+|-.|++-.|...+.++|.+.|... .+|..+|..|...++-.+-..++++|.
T Consensus 323 e~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~---------------~lyI~~a~~y~d~~~~~~~~~~F~~A~ 387 (606)
T KOG0547|consen 323 EYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFN---------------SLYIKRAAAYADENQSEKMWKDFNKAE 387 (606)
T ss_pred HHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccc---------------hHHHHHHHHHhhhhccHHHHHHHHHHH
Confidence 45578888899999999999999999999999998765 348899999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 013843 395 DCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 395 ~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
.+||.|+..||.||+.++-+++|++|+++|++|+.|+|+|
T Consensus 388 ~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~ 427 (606)
T KOG0547|consen 388 DLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPEN 427 (606)
T ss_pred hcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhh
Confidence 9999999999999999999999999999999999999986
No 62
>PRK12370 invasion protein regulator; Provisional
Probab=98.96 E-value=5.3e-09 Score=108.08 Aligned_cols=89 Identities=12% Similarity=-0.006 Sum_probs=83.4
Q ss_pred cCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 013843 331 NGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQA 410 (435)
Q Consensus 331 ~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~ 410 (435)
.+++++|+..+++|++++|.+. .++..+|.++..++++++|+..|++|++++|+++.+++.+|.+
T Consensus 317 ~~~~~~A~~~~~~Al~ldP~~~---------------~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~ 381 (553)
T PRK12370 317 QNAMIKAKEHAIKATELDHNNP---------------QALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWN 381 (553)
T ss_pred chHHHHHHHHHHHHHhcCCCCH---------------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3558999999999999998764 5688999999999999999999999999999999999999999
Q ss_pred HHhcccHHHHHHHHHHHHHhCCCC
Q 013843 411 YMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 411 ~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
+..+|++++|+..|+++++++|.+
T Consensus 382 l~~~G~~~eAi~~~~~Al~l~P~~ 405 (553)
T PRK12370 382 LFMAGQLEEALQTINECLKLDPTR 405 (553)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999999986
No 63
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.96 E-value=2.5e-08 Score=79.25 Aligned_cols=105 Identities=19% Similarity=0.163 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHH
Q 013843 312 QGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCS 391 (435)
Q Consensus 312 ~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~ 391 (435)
...++....+--+|..+-..|+.+.|++.|.++|.+.|... ++|+|+|..+.-+++.++|+++.+
T Consensus 37 ~~~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~ra---------------SayNNRAQa~RLq~~~e~ALdDLn 101 (175)
T KOG4555|consen 37 TQAIKASRELELKAIALAEAGDLDGALELFGQALCLAPERA---------------SAYNNRAQALRLQGDDEEALDDLN 101 (175)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccch---------------HhhccHHHHHHHcCChHHHHHHHH
Confidence 45677888888899999999999999999999999998764 679999999999999999999999
Q ss_pred HHHhhCCCC----HHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Q 013843 392 KVLDCDCHN----VKALYRRAQAYMEIADLILAELDIKKAIEAD 431 (435)
Q Consensus 392 ~al~~~p~~----~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~ 431 (435)
+|+++.... ..+|..+|..|..+|+-+.|+.+|+.|-++-
T Consensus 102 ~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 102 KALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhC
Confidence 999996544 3679999999999999999999999998764
No 64
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.95 E-value=4.1e-09 Score=88.83 Aligned_cols=80 Identities=15% Similarity=0.039 Sum_probs=73.4
Q ss_pred HHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccH
Q 013843 338 GKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADL 417 (435)
Q Consensus 338 ~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~ 417 (435)
...|++++++.|.. +.++|.++..+|++++|+.+|.+++.++|.+..+|+.+|.++..+|++
T Consensus 13 ~~~~~~al~~~p~~------------------~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~ 74 (144)
T PRK15359 13 EDILKQLLSVDPET------------------VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEY 74 (144)
T ss_pred HHHHHHHHHcCHHH------------------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhH
Confidence 45688888887642 567899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCC
Q 013843 418 ILAELDIKKAIEADPQNR 435 (435)
Q Consensus 418 ~eA~~~~~~al~l~P~n~ 435 (435)
++|+..|+++++++|++.
T Consensus 75 ~~A~~~y~~Al~l~p~~~ 92 (144)
T PRK15359 75 TTAINFYGHALMLDASHP 92 (144)
T ss_pred HHHHHHHHHHHhcCCCCc
Confidence 999999999999999873
No 65
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=5.8e-09 Score=101.64 Aligned_cols=106 Identities=21% Similarity=0.174 Sum_probs=85.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 013843 321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN 400 (435)
Q Consensus 321 ~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~ 400 (435)
+++.|..+|..+.|.+|+..|+.++...+....... .-...++|+|.+|.++++|.+|+.+++++|.+.|.+
T Consensus 417 ~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~--------~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~ 488 (611)
T KOG1173|consen 417 LHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKI--------FWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKD 488 (611)
T ss_pred hhhhhheeehHhhhHHHHHHHHHHHHHhhhcccccc--------chhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCc
Confidence 445566666667777777777777644433211100 113558999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 013843 401 VKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 401 ~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
+.++-.+|.+|..+|+++.|++.|.+||.++|+|
T Consensus 489 ~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 489 ASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN 522 (611)
T ss_pred hhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence 9999999999999999999999999999999987
No 66
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.90 E-value=3.4e-08 Score=91.33 Aligned_cols=104 Identities=9% Similarity=0.021 Sum_probs=91.9
Q ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhC
Q 013843 319 GRKKEEGNLL-FKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD 397 (435)
Q Consensus 319 ~~~~~~g~~~-~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 397 (435)
...++.|..+ ++.|+|++|+..|++.+...|.... ...+++.+|.+|+..++|++|+..|.++++..
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~------------a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y 210 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTY------------QPNANYWLGQLNYNKGKKDDAAYYFASVVKNY 210 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcc------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4556666665 6789999999999999999987642 24678999999999999999999999999988
Q ss_pred CCC---HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 013843 398 CHN---VKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 398 p~~---~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
|++ +.+++.+|.++..+|++++|+..|+++++..|+.
T Consensus 211 P~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 211 PKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred CCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 874 7889999999999999999999999999999975
No 67
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.89 E-value=6.3e-08 Score=79.47 Aligned_cols=105 Identities=20% Similarity=0.197 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhC
Q 013843 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD 397 (435)
Q Consensus 318 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 397 (435)
+..+.+.|...++.|+|..|++.|+......|...-. ..+.+.++.+|++.++|.+|+..+++-++++
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya------------~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYA------------EQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCccc------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 4678889999999999999999999998888765432 4668899999999999999999999999999
Q ss_pred CCCH---HHHHHHHHHHHhccc---------------HHHHHHHHHHHHHhCCCC
Q 013843 398 CHNV---KALYRRAQAYMEIAD---------------LILAELDIKKAIEADPQN 434 (435)
Q Consensus 398 p~~~---~a~~~~a~~~~~lg~---------------~~eA~~~~~~al~l~P~n 434 (435)
|.++ -|+|++|.+++.+.. ..+|...|++.+..-|++
T Consensus 78 P~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S 132 (142)
T PF13512_consen 78 PTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNS 132 (142)
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCC
Confidence 9886 679999999999987 899999999999999986
No 68
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.88 E-value=1.8e-09 Score=107.10 Aligned_cols=119 Identities=18% Similarity=0.126 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCC-C--------ChHHH-HHHH---------HHHHHHHhHHHHHH
Q 013843 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGS-F--------VDDEQ-KLVK---------SLRVSCWLNSAACC 377 (435)
Q Consensus 317 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~-~--------~~~~~-~~~~---------~~~~~~~~nla~~~ 377 (435)
..+.|...||.|--+++++.|+++|++|+.++|...- . ..+|. .... ...-.+|+-+|.+|
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy 499 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVY 499 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhhe
Confidence 3567888999999999999999999999999885321 0 11121 1111 11235688899999
Q ss_pred HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Q 013843 378 LKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (435)
Q Consensus 378 ~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n~ 435 (435)
+|+++++.|.-++++|++++|.|.......|.++.++|+.++|+..|++|+.+||.|+
T Consensus 500 ~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~ 557 (638)
T KOG1126|consen 500 LKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNP 557 (638)
T ss_pred eccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999874
No 69
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.88 E-value=6.1e-09 Score=95.72 Aligned_cols=114 Identities=22% Similarity=0.254 Sum_probs=101.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHH
Q 013843 311 NQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELC 390 (435)
Q Consensus 311 ~~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~ 390 (435)
.-.+++.+......+......++|..+++.+++.++..|..... +...+--++.||.+-+++.+|+..|
T Consensus 262 ~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~i-----------r~~~~r~~c~C~~~d~~~~eAiqqC 330 (504)
T KOG0624|consen 262 FYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMI-----------RYNGFRVLCTCYREDEQFGEAIQQC 330 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccce-----------eeeeeheeeecccccCCHHHHHHHH
Confidence 34567778888888999999999999999999999998875433 2344566789999999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Q 013843 391 SKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (435)
Q Consensus 391 ~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n~ 435 (435)
.++|+++|+++.++..+|.+|+.-.+|++|+.+|++|++++++|.
T Consensus 331 ~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~ 375 (504)
T KOG0624|consen 331 KEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNT 375 (504)
T ss_pred HHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccH
Confidence 999999999999999999999999999999999999999999874
No 70
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.88 E-value=3.7e-08 Score=89.04 Aligned_cols=98 Identities=19% Similarity=0.151 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhh
Q 013843 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC 396 (435)
Q Consensus 317 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 396 (435)
.+..+...|..++..|+|++|+..|+++++..|... .++..+|.++..++++++|+..++++++.
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~---------------~~~~~la~~~~~~~~~~~A~~~~~~al~~ 94 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDY---------------LAYLALALYYQQLGELEKAEDSFRRALTL 94 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 355666677777777777777777777776655432 23444555555555555555555555555
Q ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 013843 397 DCHNVKALYRRAQAYMEIADLILAELDIKKAIE 429 (435)
Q Consensus 397 ~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~ 429 (435)
+|.+..+++++|.++..+|++++|+..|++++.
T Consensus 95 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 127 (234)
T TIGR02521 95 NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIE 127 (234)
T ss_pred CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 555544444444444444444444444444443
No 71
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.87 E-value=1.1e-09 Score=100.64 Aligned_cols=108 Identities=19% Similarity=0.204 Sum_probs=101.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHH
Q 013843 310 NNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIEL 389 (435)
Q Consensus 310 ~~~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~ 389 (435)
..++.++++...+-.+..++..|.++.|+.+|..++.+.|... .+|.+++.++++++++..|+.+
T Consensus 106 ~Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a---------------~l~~kr~sv~lkl~kp~~airD 170 (377)
T KOG1308|consen 106 ITEEMMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPPLA---------------ILYAKRASVFLKLKKPNAAIRD 170 (377)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCchh---------------hhcccccceeeeccCCchhhhh
Confidence 3567889999999999999999999999999999999988754 5599999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC
Q 013843 390 CSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADP 432 (435)
Q Consensus 390 ~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P 432 (435)
|..|++++|+..+.|-.++.++..+|+|++|..+|..|++++-
T Consensus 171 ~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 171 CDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDY 213 (377)
T ss_pred hhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999999874
No 72
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.86 E-value=4.3e-08 Score=88.59 Aligned_cols=102 Identities=21% Similarity=0.254 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 013843 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCH 399 (435)
Q Consensus 320 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~ 399 (435)
.+...|..++..|+|++|+..|.+++...+.. .....+.++|.++...+++++|...+.++++.+|.
T Consensus 101 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 167 (234)
T TIGR02521 101 VLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYP-------------QPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ 167 (234)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhccccc-------------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 34455566666666666666666666532111 11345788999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 013843 400 NVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 400 ~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
+..+++.+|.++..+|++++|+..+++++++.|.+
T Consensus 168 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 202 (234)
T TIGR02521 168 RPESLLELAELYYLRGQYKDARAYLERYQQTYNQT 202 (234)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999987754
No 73
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.86 E-value=1.8e-08 Score=105.07 Aligned_cols=104 Identities=6% Similarity=0.015 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHh
Q 013843 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD 395 (435)
Q Consensus 316 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 395 (435)
..+..++..|....+.|.|++|...++.++++.|... .++.++|.++.+++++++|+..++++|.
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~---------------~a~~~~a~~L~~~~~~eeA~~~~~~~l~ 148 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSS---------------EAFILMLRGVKRQQGIEAGRAEIELYFS 148 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcH---------------HHHHHHHHHHHHhccHHHHHHHHHHHhh
Confidence 3466788888888899999999999999999888754 5678888888888888888888888888
Q ss_pred hCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 013843 396 CDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 396 ~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
.+|+++.+++.+|.++.++|+|++|.+.|++++..+|++
T Consensus 149 ~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~ 187 (694)
T PRK15179 149 GGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEF 187 (694)
T ss_pred cCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCc
Confidence 888888888888888888888888888888888877654
No 74
>PRK12370 invasion protein regulator; Provisional
Probab=98.86 E-value=2.4e-08 Score=103.24 Aligned_cols=101 Identities=9% Similarity=-0.109 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 013843 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDC 398 (435)
Q Consensus 319 ~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p 398 (435)
..+...|..+...|++++|+..|+++++++|++. .+++++|.++..+|++++|+..++++++++|
T Consensus 339 ~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~---------------~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P 403 (553)
T PRK12370 339 QALGLLGLINTIHSEYIVGSLLFKQANLLSPISA---------------DIKYYYGWNLFMAGQLEEALQTINECLKLDP 403 (553)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 3456678889999999999999999999998764 5689999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-CCC
Q 013843 399 HNVKALYRRAQAYMEIADLILAELDIKKAIEAD-PQN 434 (435)
Q Consensus 399 ~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~-P~n 434 (435)
.++.+++.++.+++.+|++++|++.++++++.. |++
T Consensus 404 ~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~ 440 (553)
T PRK12370 404 TRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDN 440 (553)
T ss_pred CChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccC
Confidence 998888888888888999999999999999875 543
No 75
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.84 E-value=3.4e-08 Score=86.44 Aligned_cols=103 Identities=19% Similarity=0.137 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhh-
Q 013843 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC- 396 (435)
Q Consensus 318 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~- 396 (435)
...+..+|..|.+.|+.+.|-+.|++|+.+.|.+. .+++|-|.-+..+|+|++|...+++|+..
T Consensus 69 ~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~G---------------dVLNNYG~FLC~qg~~~eA~q~F~~Al~~P 133 (250)
T COG3063 69 YLAHLVRAHYYQKLGENDLADESYRKALSLAPNNG---------------DVLNNYGAFLCAQGRPEEAMQQFERALADP 133 (250)
T ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCcc---------------chhhhhhHHHHhCCChHHHHHHHHHHHhCC
Confidence 34566778888899999999999999999988876 44888888888888888888888888874
Q ss_pred -CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Q 013843 397 -DCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (435)
Q Consensus 397 -~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n~ 435 (435)
-+..+..|-++|.|-++.|+++.|..+|+++|+++|+++
T Consensus 134 ~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~ 173 (250)
T COG3063 134 AYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFP 173 (250)
T ss_pred CCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCC
Confidence 345567888888888888888888888888888888763
No 76
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.83 E-value=3e-08 Score=88.22 Aligned_cols=91 Identities=14% Similarity=0.113 Sum_probs=82.7
Q ss_pred HcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 013843 330 KNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQ 409 (435)
Q Consensus 330 ~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~ 409 (435)
..++.++++..|+++++..|.+. ..|.++|.+|..++++++|+..|+++++++|+++.+++.+|.
T Consensus 51 ~~~~~~~~i~~l~~~L~~~P~~~---------------~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~ 115 (198)
T PRK10370 51 SQQTPEAQLQALQDKIRANPQNS---------------EQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALAT 115 (198)
T ss_pred CchhHHHHHHHHHHHHHHCCCCH---------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 36778899999999999998875 569999999999999999999999999999999999999999
Q ss_pred HH-Hhccc--HHHHHHHHHHHHHhCCCCC
Q 013843 410 AY-MEIAD--LILAELDIKKAIEADPQNR 435 (435)
Q Consensus 410 ~~-~~lg~--~~eA~~~~~~al~l~P~n~ 435 (435)
++ ...|+ +++|++.++++++++|+|.
T Consensus 116 aL~~~~g~~~~~~A~~~l~~al~~dP~~~ 144 (198)
T PRK10370 116 VLYYQAGQHMTPQTREMIDKALALDANEV 144 (198)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHhCCCCh
Confidence 86 67787 5999999999999999873
No 77
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=1.6e-08 Score=96.44 Aligned_cols=97 Identities=22% Similarity=0.245 Sum_probs=81.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH
Q 013843 324 EGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKA 403 (435)
Q Consensus 324 ~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a 403 (435)
.||-|--+++.++|+..|++||+++|... .+|.-+|.=|..+++-..|+..|++|++++|.+-+|
T Consensus 336 IaNYYSlr~eHEKAv~YFkRALkLNp~~~---------------~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRA 400 (559)
T KOG1155|consen 336 IANYYSLRSEHEKAVMYFKRALKLNPKYL---------------SAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRA 400 (559)
T ss_pred ehhHHHHHHhHHHHHHHHHHHHhcCcchh---------------HHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHH
Confidence 47888888999999999999999988753 557788888888888888888888888888888888
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Q 013843 404 LYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (435)
Q Consensus 404 ~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n~ 435 (435)
||.+|++|.-++...=|+-+|++|+++-|+|+
T Consensus 401 WYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDs 432 (559)
T KOG1155|consen 401 WYGLGQAYEIMKMHFYALYYFQKALELKPNDS 432 (559)
T ss_pred HhhhhHHHHHhcchHHHHHHHHHHHhcCCCch
Confidence 88888888888888888888888888888774
No 78
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.82 E-value=1.4e-08 Score=74.70 Aligned_cols=61 Identities=23% Similarity=0.404 Sum_probs=58.9
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 013843 374 AACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 374 a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
...|++.++|++|+.++++++.++|+++.+++.+|.++..+|++.+|+++|+++++++|++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~ 62 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDD 62 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence 5678999999999999999999999999999999999999999999999999999999986
No 79
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=1.2e-08 Score=100.56 Aligned_cols=98 Identities=24% Similarity=0.424 Sum_probs=83.1
Q ss_pred CCCCCEEEEEEEEEEcCCcEEecccCCCCCeeEEeCCCccccchHHHhccccCCcEEEEEEEcCCCCCCCCCCCCCCCCC
Q 013843 62 PEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPPN 141 (435)
Q Consensus 62 ~~~gd~V~v~y~~~~~~g~~~~~s~~~~~p~~~~lg~~~~~~g~~~~l~~m~~G~~~~~~~~ip~~~~yg~~~~~~i~~~ 141 (435)
++.||.|+|+|+++. ||..|.+... +.+.+.||+++++|||+.+|.||++|++..|.+++|.++.-+.. +|
T Consensus 158 a~~gD~v~IDf~g~i-Dg~~fegg~a--e~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~L------aG 228 (441)
T COG0544 158 AENGDRVTIDFEGSV-DGEEFEGGKA--ENFSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEEL------AG 228 (441)
T ss_pred cccCCEEEEEEEEEE-cCeeccCccc--cCeEEEEcCCCchhhHHhhhccCcCCCeeEEEEEcccccchhHh------CC
Confidence 899999999999975 9999988665 55999999999999999999999999999988899998777665 67
Q ss_pred CeEEEEEEEeeeeeeeccCCCCceEEE
Q 013843 142 SVVQFEVELVSWITVVDLSKDGGIVKK 168 (435)
Q Consensus 142 ~~l~~~v~l~~~~~~~d~~~dg~~~k~ 168 (435)
....|.|++..+....-+.-|....+.
T Consensus 229 K~a~F~V~vkeVk~~elpEldDEfAk~ 255 (441)
T COG0544 229 KEATFKVKVKEVKKRELPELDDEFAKK 255 (441)
T ss_pred CceEEEEEEEEEeecCCCCCCHHHHHh
Confidence 889999999999876655544444444
No 80
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.80 E-value=3.7e-08 Score=93.53 Aligned_cols=92 Identities=13% Similarity=-0.047 Sum_probs=81.1
Q ss_pred CCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013843 332 GKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAY 411 (435)
Q Consensus 332 g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~ 411 (435)
+..+.++..+.++|...+.++. .....|+++|.+|..+|++.+|+..|+++++++|+++.+|+.+|.++
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~-----------~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~ 108 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDE-----------ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYL 108 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcH-----------hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3567788888888875543331 24567999999999999999999999999999999999999999999
Q ss_pred HhcccHHHHHHHHHHHHHhCCCC
Q 013843 412 MEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 412 ~~lg~~~eA~~~~~~al~l~P~n 434 (435)
..+|++++|++.|+++++++|++
T Consensus 109 ~~~g~~~~A~~~~~~Al~l~P~~ 131 (296)
T PRK11189 109 TQAGNFDAAYEAFDSVLELDPTY 131 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999986
No 81
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.79 E-value=5.3e-08 Score=105.56 Aligned_cols=91 Identities=12% Similarity=0.139 Sum_probs=79.5
Q ss_pred HHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 013843 329 FKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRA 408 (435)
Q Consensus 329 ~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a 408 (435)
...|++++|+..|++++++.|. ..++.++|.++.++|++++|+..++++++++|+++.+++++|
T Consensus 587 ~~~Gr~~eAl~~~~~AL~l~P~----------------~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG 650 (987)
T PRK09782 587 YIPGQPELALNDLTRSLNIAPS----------------ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALG 650 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhCCC----------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3346777777777777766653 256899999999999999999999999999999999999999
Q ss_pred HHHHhcccHHHHHHHHHHHHHhCCCCC
Q 013843 409 QAYMEIADLILAELDIKKAIEADPQNR 435 (435)
Q Consensus 409 ~~~~~lg~~~eA~~~~~~al~l~P~n~ 435 (435)
.++..+|++++|++.|+++++++|++.
T Consensus 651 ~aL~~~G~~eeAi~~l~~AL~l~P~~~ 677 (987)
T PRK09782 651 YALWDSGDIAQSREMLERAHKGLPDDP 677 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 999999999999999999999999873
No 82
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.77 E-value=7.4e-08 Score=101.42 Aligned_cols=98 Identities=13% Similarity=0.104 Sum_probs=49.7
Q ss_pred HHHHHHHHHHcCCHHH----HHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhh
Q 013843 321 KKEEGNLLFKNGKYER----AGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC 396 (435)
Q Consensus 321 ~~~~g~~~~~~g~y~~----A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 396 (435)
+...|..++..|++++ |+..|++++.+.|.+. .++.++|.++.++|++++|+..+++++++
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~---------------~a~~~lg~~l~~~g~~~eA~~~l~~al~l 313 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNV---------------RIVTLYADALIRTGQNEKAIPLLQQSLAT 313 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCH---------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3344555555555553 4555555555554332 33445555555555555555555555555
Q ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q 013843 397 DCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQ 433 (435)
Q Consensus 397 ~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~ 433 (435)
+|+++.+++.+|.++..+|++++|++.|+++++.+|+
T Consensus 314 ~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~ 350 (656)
T PRK15174 314 HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV 350 (656)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 5555555555555555555555555555555555444
No 83
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.77 E-value=7.9e-08 Score=101.22 Aligned_cols=102 Identities=14% Similarity=0.022 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhC
Q 013843 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD 397 (435)
Q Consensus 318 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 397 (435)
+..+...|..++..|++++|+..|++++.+.|.+. .++.++|.+|.++|++++|+..|+++++.+
T Consensus 284 ~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~---------------~a~~~La~~l~~~G~~~eA~~~l~~al~~~ 348 (656)
T PRK15174 284 VRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLP---------------YVRAMYARALRQVGQYTAASDEFVQLAREK 348 (656)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 45677889999999999999999999999988754 558899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 013843 398 CHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 398 p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
|++..+++++|.++..+|++++|++.|+++++++|++
T Consensus 349 P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 349 GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 9999888889999999999999999999999999975
No 84
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.76 E-value=2.3e-08 Score=71.84 Aligned_cols=64 Identities=17% Similarity=0.319 Sum_probs=57.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCH
Q 013843 323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNV 401 (435)
Q Consensus 323 ~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~ 401 (435)
..|..+++.|+|++|+..|+++++..|.+ ..+++.+|.|+..+|++++|+..|+++++.+|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~---------------~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDN---------------PEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTH---------------HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 57899999999999999999999998764 47799999999999999999999999999999875
No 85
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.75 E-value=3.1e-08 Score=98.43 Aligned_cols=104 Identities=20% Similarity=0.206 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHh
Q 013843 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD 395 (435)
Q Consensus 316 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 395 (435)
+.-.+++-.|..|.++++|+.|.-+|++|++++|.+. .+.+-++..+.++|+.++|+..+++|+.
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~ns---------------vi~~~~g~~~~~~k~~d~AL~~~~~A~~ 551 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNS---------------VILCHIGRIQHQLKRKDKALQLYEKAIH 551 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccch---------------hHHhhhhHHHHHhhhhhHHHHHHHHHHh
Confidence 3456788889999999999999999999999999875 4467788888899999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 013843 396 CDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 396 ~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
+||.++-.-|.+|.++..++++++|+..|++..++-|++
T Consensus 552 ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~e 590 (638)
T KOG1126|consen 552 LDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQE 590 (638)
T ss_pred cCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcch
Confidence 999999999999999999999999999998888888865
No 86
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.74 E-value=3.4e-08 Score=73.78 Aligned_cols=67 Identities=21% Similarity=0.230 Sum_probs=58.2
Q ss_pred HHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Q 013843 365 LRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD-------CHNVKALYRRAQAYMEIADLILAELDIKKAIEAD 431 (435)
Q Consensus 365 ~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-------p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~ 431 (435)
..+.++.|+|.+|..+|+|++|+.+|++++++. |....+++++|.++..+|++++|++++++|+++.
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 356789999999999999999999999999762 1236789999999999999999999999999873
No 87
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.74 E-value=1.3e-07 Score=84.51 Aligned_cols=101 Identities=18% Similarity=0.127 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 013843 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDC 398 (435)
Q Consensus 319 ~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p 398 (435)
..+..+|...++.|+|..|+..++++..+.|.+.+ +|+-+|.+|.+.|+++.|...|.+++++.|
T Consensus 101 ~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~---------------~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~ 165 (257)
T COG5010 101 ELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWE---------------AWNLLGAALDQLGRFDEARRAYRQALELAP 165 (257)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChh---------------hhhHHHHHHHHccChhHHHHHHHHHHHhcc
Confidence 34555999999999999999999999999998874 489999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 013843 399 HNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 399 ~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
.++.++.++|..|+-.|+++.|...+..+...-+.|
T Consensus 166 ~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad 201 (257)
T COG5010 166 NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAAD 201 (257)
T ss_pred CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCc
Confidence 999999999999999999999999999998776644
No 88
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.74 E-value=2.2e-07 Score=85.14 Aligned_cols=104 Identities=12% Similarity=0.081 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHc--------cCHHHHHHHH
Q 013843 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKL--------KDYQGAIELC 390 (435)
Q Consensus 319 ~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~--------~~~~~A~~~~ 390 (435)
..+...|..+++.|+|++|+..|+++++..|.+... ..+++++|.|+.++ +++++|+..+
T Consensus 71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~------------~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~ 138 (235)
T TIGR03302 71 QAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA------------DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAF 138 (235)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch------------HHHHHHHHHHHHHhcccccCCHHHHHHHHHHH
Confidence 467888999999999999999999999999876643 23578889998876 8899999999
Q ss_pred HHHHhhCCCCHHHH-----------------HHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 013843 391 SKVLDCDCHNVKAL-----------------YRRAQAYMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 391 ~~al~~~p~~~~a~-----------------~~~a~~~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
++++..+|++..++ +.+|..|+..|++.+|+..|++++...|++
T Consensus 139 ~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 199 (235)
T TIGR03302 139 QELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDT 199 (235)
T ss_pred HHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCC
Confidence 99999999986442 467889999999999999999999998865
No 89
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.73 E-value=1.8e-07 Score=105.03 Aligned_cols=115 Identities=20% Similarity=0.178 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHH-HHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhh
Q 013843 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQK-LVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC 396 (435)
Q Consensus 318 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~-~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 396 (435)
...+...|..+++.|++++|+..|+++++..|...... .+. .+......++.++|.++.+.+++++|+..|++++++
T Consensus 303 ~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~--~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~ 380 (1157)
T PRK11447 303 SEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRD--KWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV 380 (1157)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchh--HHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 45677889999999999999999999999887654321 111 111122334567788999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 013843 397 DCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 397 ~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
+|++..+++.+|.++..+|++++|++.|+++++++|+|
T Consensus 381 ~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~ 418 (1157)
T PRK11447 381 DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGN 418 (1157)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999986
No 90
>PLN02789 farnesyltranstransferase
Probab=98.73 E-value=1.7e-07 Score=89.31 Aligned_cols=102 Identities=16% Similarity=0.038 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCH--HHHHHHHHHHH
Q 013843 318 AGRKKEEGNLLFKNG-KYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDY--QGAIELCSKVL 394 (435)
Q Consensus 318 a~~~~~~g~~~~~~g-~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~--~~A~~~~~~al 394 (435)
...+..++..+...+ ++++|+..+.+++..+|.+. .++++++.++.++++. ++++.+++++|
T Consensus 71 ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkny---------------qaW~~R~~~l~~l~~~~~~~el~~~~kal 135 (320)
T PLN02789 71 YTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNY---------------QIWHHRRWLAEKLGPDAANKELEFTRKIL 135 (320)
T ss_pred HHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcch---------------HHhHHHHHHHHHcCchhhHHHHHHHHHHH
Confidence 446666777777777 57888888889888888765 4588999888888874 78899999999
Q ss_pred hhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 013843 395 DCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 395 ~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
+.+|+|..||..++.++..+++|++|++++.+++++||.|
T Consensus 136 ~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N 175 (320)
T PLN02789 136 SLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRN 175 (320)
T ss_pred HhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCc
Confidence 9999999999999999999999999999999999999987
No 91
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.73 E-value=1.4e-07 Score=96.63 Aligned_cols=103 Identities=17% Similarity=0.157 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhh
Q 013843 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC 396 (435)
Q Consensus 317 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 396 (435)
.++.+..+||.+|.+|+++.|...+.++++.+|... .+|..+|.||..+|+.++|+.+.-.|-.+
T Consensus 138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~---------------~ay~tL~~IyEqrGd~eK~l~~~llAAHL 202 (895)
T KOG2076|consen 138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNP---------------IAYYTLGEIYEQRGDIEKALNFWLLAAHL 202 (895)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccch---------------hhHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 478899999999999999999999999999998875 33667777777777777777666666666
Q ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 013843 397 DCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 397 ~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
+|++..-|.+++....++|++.+|+-+|.+|++++|.|
T Consensus 203 ~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n 240 (895)
T KOG2076|consen 203 NPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSN 240 (895)
T ss_pred CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcc
Confidence 77666666666666666677777777777777666655
No 92
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.72 E-value=1.1e-07 Score=95.99 Aligned_cols=103 Identities=22% Similarity=0.150 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHH--HHHHHHh
Q 013843 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIE--LCSKVLD 395 (435)
Q Consensus 318 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~--~~~~al~ 395 (435)
+..++..|..+..+|++.+|.+.|..|+.++|.+. .+...+|.|+.+.|+-.-|.. ....|++
T Consensus 684 ~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv---------------~s~~Ala~~lle~G~~~la~~~~~L~dalr 748 (799)
T KOG4162|consen 684 ASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHV---------------PSMTALAELLLELGSPRLAEKRSLLSDALR 748 (799)
T ss_pred HHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCc---------------HHHHHHHHHHHHhCCcchHHHHHHHHHHHh
Confidence 44567888999999999999999999999999876 448899999999999888888 9999999
Q ss_pred hCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Q 013843 396 CDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (435)
Q Consensus 396 ~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n~ 435 (435)
+||.|++|||.+|.++..+|+.++|.++|..|++|++.+|
T Consensus 749 ~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 749 LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 9999999999999999999999999999999999999875
No 93
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.71 E-value=1.1e-07 Score=99.25 Aligned_cols=103 Identities=10% Similarity=-0.108 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHH
Q 013843 315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVL 394 (435)
Q Consensus 315 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 394 (435)
.+.+....+.++.+++.+++++|+..+++++...|++. ..++++|.|+.++|+|++|+..|++++
T Consensus 117 Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~---------------~~~~~~a~~l~~~g~~~~A~~~y~~~~ 181 (694)
T PRK15179 117 PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSA---------------REILLEAKSWDEIGQSEQADACFERLS 181 (694)
T ss_pred CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCH---------------HHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 34567788899999999999999999999999998865 569999999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC
Q 013843 395 DCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADP 432 (435)
Q Consensus 395 ~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P 432 (435)
..+|++++++..+|.++..+|+.++|...|++|+++..
T Consensus 182 ~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 182 RQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG 219 (694)
T ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999998753
No 94
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=1.2e-07 Score=90.48 Aligned_cols=97 Identities=18% Similarity=0.106 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 013843 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCH 399 (435)
Q Consensus 320 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~ 399 (435)
.+--.|-.|...++-..|+..|++|++++|.+. .+|+-+|++|.-++-+.=|+-++++|+++.|+
T Consensus 366 aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~Dy---------------RAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn 430 (559)
T KOG1155|consen 366 AWTLMGHEYVEMKNTHAAIESYRRAVDINPRDY---------------RAWYGLGQAYEIMKMHFYALYYFQKALELKPN 430 (559)
T ss_pred HHHHhhHHHHHhcccHHHHHHHHHHHhcCchhH---------------HHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC
Confidence 445567888899999999999999999998875 33566666666666666666666666666666
Q ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Q 013843 400 NVKALYRRAQAYMEIADLILAELDIKKAIEAD 431 (435)
Q Consensus 400 ~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~ 431 (435)
++..|..+|.||.++++.++|+.+|++|+...
T Consensus 431 DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 431 DSRLWVALGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence 66666666666666666666666666665543
No 95
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=7.4e-09 Score=95.83 Aligned_cols=125 Identities=33% Similarity=0.357 Sum_probs=108.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCCh---HH-HHHHHHHHHHHHhHHHHHHHHccCHHHH
Q 013843 311 NQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVD---DE-QKLVKSLRVSCWLNSAACCLKLKDYQGA 386 (435)
Q Consensus 311 ~~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~---~~-~~~~~~~~~~~~~nla~~~~~~~~~~~A 386 (435)
....+..++..++.|+..|+.++|..|...|.++++.....+.... ++ +.....++..++.|++.|-++++.+..|
T Consensus 215 ~~~~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a 294 (372)
T KOG0546|consen 215 FDKALEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGA 294 (372)
T ss_pred cchhhhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcc
Confidence 4456778888999999999999999999999999998753211111 12 3457788888999999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Q 013843 387 IELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (435)
Q Consensus 387 ~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n~ 435 (435)
+..+..+++.+++..++||+++.+++.+.++++|+++++.+...+|+++
T Consensus 295 ~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~ 343 (372)
T KOG0546|consen 295 RFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDK 343 (372)
T ss_pred eeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchH
Confidence 9999999999999999999999999999999999999999999999873
No 96
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.69 E-value=8.3e-08 Score=79.80 Aligned_cols=81 Identities=16% Similarity=0.030 Sum_probs=74.0
Q ss_pred HHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHH
Q 013843 339 KKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLI 418 (435)
Q Consensus 339 ~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~ 418 (435)
..|.+++...|.+. ..++.+|.++++.+++++|+..+++++..+|.++.+++++|.++..+|+++
T Consensus 4 ~~~~~~l~~~p~~~---------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~ 68 (135)
T TIGR02552 4 ATLKDLLGLDSEQL---------------EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYE 68 (135)
T ss_pred hhHHHHHcCChhhH---------------HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence 45778888777643 458899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCC
Q 013843 419 LAELDIKKAIEADPQN 434 (435)
Q Consensus 419 eA~~~~~~al~l~P~n 434 (435)
+|..+|+++++++|.+
T Consensus 69 ~A~~~~~~~~~~~p~~ 84 (135)
T TIGR02552 69 EAIDAYALAAALDPDD 84 (135)
T ss_pred HHHHHHHHHHhcCCCC
Confidence 9999999999999976
No 97
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.69 E-value=6.5e-08 Score=93.56 Aligned_cols=64 Identities=13% Similarity=0.034 Sum_probs=61.3
Q ss_pred HHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH---HHHHHHHHHhcccHHHHHHHHHHHHHh
Q 013843 367 VSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKA---LYRRAQAYMEIADLILAELDIKKAIEA 430 (435)
Q Consensus 367 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a---~~~~a~~~~~lg~~~eA~~~~~~al~l 430 (435)
...++|+|.+|+++++|++|+..|++||+++|++..+ ||++|.+|..+|++++|+++|++|+++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4679999999999999999999999999999999865 999999999999999999999999997
No 98
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=98.69 E-value=6.1e-08 Score=96.36 Aligned_cols=100 Identities=23% Similarity=0.368 Sum_probs=80.1
Q ss_pred CCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeeEEeCCCccccchHHHhccccCCcEEEEEEEcCCCCCCCCCCCCCCC
Q 013843 60 DTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLP 139 (435)
Q Consensus 60 ~~~~~gd~V~v~y~~~~~~g~~~~~s~~~~~p~~~~lg~~~~~~g~~~~l~~m~~G~~~~~~~~ip~~~~yg~~~~~~i~ 139 (435)
+.++.||.|+|+|+++. +|..++++.. .++.|.+|.+.+++||+++|.||++|++++| .++....|+....
T Consensus 145 ~~~~~gD~V~v~~~~~~-dg~~~~~~~~--~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~--~v~~p~~~~~~~~---- 215 (408)
T TIGR00115 145 RAAEKGDRVTIDFEGFI-DGEAFEGGKA--ENFSLELGSGQFIPGFEEQLVGMKAGEEKEI--KVTFPEDYHAEEL---- 215 (408)
T ss_pred cccCCCCEEEEEEEEEE-CCEECcCCCC--CCeEEEECCCCcchhHHHHhCCCCCCCeeEE--EecCccccCcccC----
Confidence 36789999999999986 8999988754 7899999999999999999999999999999 6665555665542
Q ss_pred CCCeEEEEEEEeeeeeeeccCCCCceEEE
Q 013843 140 PNSVVQFEVELVSWITVVDLSKDGGIVKK 168 (435)
Q Consensus 140 ~~~~l~~~v~l~~~~~~~d~~~dg~~~k~ 168 (435)
+|.++.|+|++..+....-+.-+..+.+.
T Consensus 216 ~gk~~~f~v~i~~I~~~~~peldDefak~ 244 (408)
T TIGR00115 216 AGKEATFKVTVKEVKEKELPELDDEFAKE 244 (408)
T ss_pred CCCeEEEEEEEEEeccCCCCCCCHHHHHh
Confidence 68889999999998765544434444443
No 99
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.67 E-value=7.2e-08 Score=90.93 Aligned_cols=113 Identities=24% Similarity=0.191 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCC-----------Ch-HH-HHHHHHHH------HHHHhHHHHHHH
Q 013843 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSF-----------VD-DE-QKLVKSLR------VSCWLNSAACCL 378 (435)
Q Consensus 318 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~-----------~~-~~-~~~~~~~~------~~~~~nla~~~~ 378 (435)
...+...|..+.+.|++++|+..|+++++..|.+... .. ++ ...+..+. ..++..+|.+|.
T Consensus 146 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~ 225 (280)
T PF13429_consen 146 ARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYL 225 (280)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhc
Confidence 4566778999999999999999999999999976431 11 11 01111111 234566777888
Q ss_pred HccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q 013843 379 KLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEA 430 (435)
Q Consensus 379 ~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l 430 (435)
.+|++++|+.+++++++.+|+++..+..+|.++...|++++|.+.++++++.
T Consensus 226 ~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 226 QLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 8888888888888888888888888888888888888888888887777653
No 100
>PRK01490 tig trigger factor; Provisional
Probab=98.67 E-value=7.9e-08 Score=96.35 Aligned_cols=98 Identities=26% Similarity=0.479 Sum_probs=77.3
Q ss_pred CCCCCCEEEEEEEEEEcCCcEEecccCCCCCeeEEeCCCccccchHHHhccccCCcEEEEEEEcCCCCCCCCCCCCCCCC
Q 013843 61 TPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTGQVATGLDNGIITMKKRECAVFTFTLPSELRFGVEGRDSLPP 140 (435)
Q Consensus 61 ~~~~gd~V~v~y~~~~~~g~~~~~s~~~~~p~~~~lg~~~~~~g~~~~l~~m~~G~~~~~~~~ip~~~~yg~~~~~~i~~ 140 (435)
.++.||.|+|+|+++. +|..++++.. .++.|.+|.+.+++||+++|.||++|+++.|++.+|.+ |+.... +
T Consensus 157 ~~~~gD~V~vd~~~~~-~g~~~~~~~~--~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~--~~~~~l----a 227 (435)
T PRK01490 157 PAENGDRVTIDFVGSI-DGEEFEGGKA--EDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPED--YHAEDL----A 227 (435)
T ss_pred cCCCCCEEEEEEEEEE-CCEECcCCCC--CceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCccc--cccccC----C
Confidence 5799999999999997 8999887654 67999999999999999999999999999995555554 443322 5
Q ss_pred CCeEEEEEEEeeeeeeeccCCCCceEE
Q 013843 141 NSVVQFEVELVSWITVVDLSKDGGIVK 167 (435)
Q Consensus 141 ~~~l~~~v~l~~~~~~~d~~~dg~~~k 167 (435)
|.+..|.|++..+....-+.-+..+.+
T Consensus 228 gk~~~f~v~v~~V~~~~~pel~Defak 254 (435)
T PRK01490 228 GKEATFKVTVKEVKEKELPELDDEFAK 254 (435)
T ss_pred CCeEEEEEEEEEeccCCCCCCCHHHHH
Confidence 788999999999876554433333433
No 101
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.66 E-value=6.3e-08 Score=83.78 Aligned_cols=106 Identities=20% Similarity=0.112 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHH
Q 013843 315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVL 394 (435)
Q Consensus 315 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 394 (435)
.+++.-+.++|+.|-+.|-+..|...|.++|.+.|..+ .+++.+|..+...++|+.|.+.++.++
T Consensus 62 eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~---------------~vfNyLG~Yl~~a~~fdaa~eaFds~~ 126 (297)
T COG4785 62 EERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMP---------------EVFNYLGIYLTQAGNFDAAYEAFDSVL 126 (297)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcH---------------HHHHHHHHHHHhcccchHHHHHhhhHh
Confidence 34688999999999999999999999999999998754 669999999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Q 013843 395 DCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (435)
Q Consensus 395 ~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n~ 435 (435)
++||.+.-|+.+||.+++.-|+|.-|.+++.+..+-||+|+
T Consensus 127 ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DP 167 (297)
T COG4785 127 ELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDP 167 (297)
T ss_pred ccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCCh
Confidence 99999999999999999999999999999999999999986
No 102
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.66 E-value=3.7e-07 Score=90.23 Aligned_cols=104 Identities=15% Similarity=0.096 Sum_probs=68.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 013843 321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN 400 (435)
Q Consensus 321 ~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~ 400 (435)
+...+..+.+.|+|++|+..|.++++..+.... ......++++|.++.+.+++++|+.+++++++.+|++
T Consensus 144 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 213 (389)
T PRK11788 144 LQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLR----------VEIAHFYCELAQQALARGDLDAARALLKKALAADPQC 213 (389)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHhcCCcch----------HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCC
Confidence 344445555555555555555555544332210 0122346677777888888888888888888888888
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 013843 401 VKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 401 ~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
..+++.+|.++..+|++++|++.|+++++.+|.+
T Consensus 214 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 247 (389)
T PRK11788 214 VRASILLGDLALAQGDYAAAIEALERVEEQDPEY 247 (389)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence 8888888888888888888888888888777653
No 103
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.65 E-value=3e-07 Score=98.77 Aligned_cols=101 Identities=11% Similarity=0.045 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhC
Q 013843 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD 397 (435)
Q Consensus 318 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 397 (435)
+..+...|..+...|++++|+..|+++++..|.+. .++.++|.++...+++++|+..++++++.+
T Consensus 49 a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~---------------~a~~~la~~l~~~g~~~eA~~~l~~~l~~~ 113 (765)
T PRK10049 49 ARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQND---------------DYQRGLILTLADAGQYDEALVKAKQLVSGA 113 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 33478889999999999999999999999988764 457899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 013843 398 CHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 398 p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
|++.. ++.+|.++...|++++|+..|+++++++|++
T Consensus 114 P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~ 149 (765)
T PRK10049 114 PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQT 149 (765)
T ss_pred CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 99999 9999999999999999999999999999987
No 104
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.64 E-value=4.6e-07 Score=101.69 Aligned_cols=118 Identities=18% Similarity=0.177 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCC-----------hHHH-H---------------HHHHHHHHHH
Q 013843 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFV-----------DDEQ-K---------------LVKSLRVSCW 370 (435)
Q Consensus 318 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~-----------~~~~-~---------------~~~~~~~~~~ 370 (435)
...+...|..+...|++++|+..|++++++.|.+.... .++. . ....+....+
T Consensus 385 ~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~ 464 (1157)
T PRK11447 385 SYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRL 464 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHH
Confidence 34567789999999999999999999999887653210 0000 0 0112224456
Q ss_pred hHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Q 013843 371 LNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (435)
Q Consensus 371 ~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n~ 435 (435)
.++|.++...+++++|+..|+++++++|+++.+++.+|.+|..+|++++|+..|+++++++|++.
T Consensus 465 ~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~ 529 (1157)
T PRK11447 465 AQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDP 529 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence 77899999999999999999999999999999999999999999999999999999999999863
No 105
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.64 E-value=3.7e-08 Score=71.36 Aligned_cols=58 Identities=34% Similarity=0.395 Sum_probs=54.4
Q ss_pred HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 013843 377 CLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 377 ~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
+++.|+|++|+..|++++..+|++..+++.+|.+|+..|++++|.+.+++++..+|+|
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 3678999999999999999999999999999999999999999999999999999985
No 106
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.64 E-value=7.2e-07 Score=79.82 Aligned_cols=107 Identities=21% Similarity=0.180 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhh
Q 013843 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC 396 (435)
Q Consensus 317 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 396 (435)
.+..+...|..++..|+|.+|+..|++.+...|.... ...+.+.+|.++++.++|..|+..+++.++.
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~------------a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPY------------APQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTT------------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChH------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999999887643 3567899999999999999999999999999
Q ss_pred CCCCH---HHHHHHHHHHHhccc-----------HHHHHHHHHHHHHhCCCCC
Q 013843 397 DCHNV---KALYRRAQAYMEIAD-----------LILAELDIKKAIEADPQNR 435 (435)
Q Consensus 397 ~p~~~---~a~~~~a~~~~~lg~-----------~~eA~~~~~~al~l~P~n~ 435 (435)
.|+++ .++|.+|.+++.+.+ ..+|+..|+..+..-|+.+
T Consensus 72 yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~ 124 (203)
T PF13525_consen 72 YPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSE 124 (203)
T ss_dssp -TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTST
T ss_pred CCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCch
Confidence 99875 689999999877643 4589999999999999863
No 107
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.63 E-value=4.4e-07 Score=76.62 Aligned_cols=98 Identities=18% Similarity=0.193 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhC
Q 013843 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD 397 (435)
Q Consensus 318 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 397 (435)
.......|..++..|+|++|+..|++++...+.. .+...+.+++|.+++.+++|++|+..++. +.-.
T Consensus 48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~------------~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~ 114 (145)
T PF09976_consen 48 ALAALQLAKAAYEQGDYDEAKAALEKALANAPDP------------ELKPLARLRLARILLQQGQYDEALATLQQ-IPDE 114 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCH------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCc
Confidence 4567778999999999999999999999865322 33456788999999999999999999966 3334
Q ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 013843 398 CHNVKALYRRAQAYMEIADLILAELDIKKAI 428 (435)
Q Consensus 398 p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al 428 (435)
+-.+.++..+|.+|..+|++++|+..|++||
T Consensus 115 ~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 115 AFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred chHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 4456788899999999999999999999985
No 108
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.63 E-value=3.8e-07 Score=97.97 Aligned_cols=103 Identities=9% Similarity=0.006 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhC
Q 013843 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD 397 (435)
Q Consensus 318 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 397 (435)
...+...|..+...|++++|+..+++++...|.+. .+++++|.++...|++++|+..++++++++
T Consensus 359 ~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~---------------~l~~~lA~l~~~~g~~~~A~~~l~~al~l~ 423 (765)
T PRK10049 359 LQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQ---------------GLRIDYASVLQARGWPRAAENELKKAEVLE 423 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Confidence 34566788899999999999999999999988764 569999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Q 013843 398 CHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (435)
Q Consensus 398 p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n~ 435 (435)
|++..+++.+|.+++.++++++|.+.++++++.+|+|+
T Consensus 424 Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 424 PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence 99999999999999999999999999999999999874
No 109
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.62 E-value=1e-07 Score=69.01 Aligned_cols=67 Identities=31% Similarity=0.339 Sum_probs=59.8
Q ss_pred HHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 013843 328 LFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRR 407 (435)
Q Consensus 328 ~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~ 407 (435)
+++.|+|++|+..|++++...|.+. .+++.+|.||++.|++++|...+.+++..+|+++..+..+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~---------------~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNP---------------EARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSH---------------HHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 4789999999999999999998864 6688999999999999999999999999999988887777
Q ss_pred HH
Q 013843 408 AQ 409 (435)
Q Consensus 408 a~ 409 (435)
+.
T Consensus 66 a~ 67 (68)
T PF14559_consen 66 AQ 67 (68)
T ss_dssp HH
T ss_pred hc
Confidence 65
No 110
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.61 E-value=6.9e-07 Score=72.11 Aligned_cols=99 Identities=18% Similarity=0.014 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 013843 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDC 398 (435)
Q Consensus 319 ~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p 398 (435)
..+++.|..+-..|+.++|+..|++++...... ..+..++.++|.++..+|++++|+..+++++...|
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~------------~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p 69 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSG------------ADRRRALIQLASTLRNLGRYDEALALLEEALEEFP 69 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 357888999999999999999999999854322 12456788999999999999999999999999988
Q ss_pred C---CHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 013843 399 H---NVKALYRRAQAYMEIADLILAELDIKKAIE 429 (435)
Q Consensus 399 ~---~~~a~~~~a~~~~~lg~~~eA~~~~~~al~ 429 (435)
+ +......++.++..+|++++|+..+..++.
T Consensus 70 ~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 70 DDELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred CccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8 778888899999999999999999988775
No 111
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.59 E-value=9.5e-07 Score=80.01 Aligned_cols=104 Identities=13% Similarity=0.139 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 013843 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDC 398 (435)
Q Consensus 319 ~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p 398 (435)
...++.|..+++.|+|..|...|...++..|+..-. ..+++=||.|++.+|+|..|...|..+.+-.|
T Consensus 142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~------------~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P 209 (262)
T COG1729 142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYT------------PNAYYWLGESLYAQGDYEDAAYIFARVVKDYP 209 (262)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCccc------------chhHHHHHHHHHhcccchHHHHHHHHHHHhCC
Confidence 348999999999999999999999999999886533 47799999999999999999999999999988
Q ss_pred CCH---HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 013843 399 HNV---KALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 399 ~~~---~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
+++ .+++.+|.++..+|+.++|...|+++++--|+.
T Consensus 210 ~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 210 KSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred CCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 774 669999999999999999999999999998875
No 112
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.59 E-value=4.6e-07 Score=98.62 Aligned_cols=104 Identities=27% Similarity=0.258 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHh
Q 013843 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD 395 (435)
Q Consensus 316 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 395 (435)
..+..+...|..++..|+|++|+..|+++++..|... .+++.+|.+++..+++++|+..++++++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---------------~~~~~la~~~~~~~~~~~A~~~~~~~~~ 187 (899)
T TIGR02917 123 GAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSL---------------YAKLGLAQLALAENRFDEARALIDEVLT 187 (899)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh---------------hhHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4456778889999999999999999999998877654 2356666666666667777766666666
Q ss_pred hCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 013843 396 CDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 396 ~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
.+|.+..+++.+|.++..+|++++|+..|+++++++|++
T Consensus 188 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~ 226 (899)
T TIGR02917 188 ADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNN 226 (899)
T ss_pred hCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Confidence 666666666666666666666666666666666666654
No 113
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.58 E-value=8.2e-07 Score=87.74 Aligned_cols=114 Identities=14% Similarity=0.031 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCC-------------hHHH---HHHH----HHHHHHHhHHHHHHHH
Q 013843 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFV-------------DDEQ---KLVK----SLRVSCWLNSAACCLK 379 (435)
Q Consensus 320 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~-------------~~~~---~~~~----~~~~~~~~nla~~~~~ 379 (435)
.+...|..+++.|++++|+..|+++++..|...... ++.. .... .....++..++.+|.+
T Consensus 182 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 261 (389)
T PRK11788 182 FYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQA 261 (389)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH
Confidence 345566666777777777777777777655432100 0000 0000 0011234455556666
Q ss_pred ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 013843 380 LKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 380 ~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
.|++++|+..++++++.+|+...+ ..++.++...|++++|+..|+++++.+|++
T Consensus 262 ~g~~~~A~~~l~~~~~~~p~~~~~-~~la~~~~~~g~~~~A~~~l~~~l~~~P~~ 315 (389)
T PRK11788 262 LGDEAEGLEFLRRALEEYPGADLL-LALAQLLEEQEGPEAAQALLREQLRRHPSL 315 (389)
T ss_pred cCCHHHHHHHHHHHHHhCCCchHH-HHHHHHHHHhCCHHHHHHHHHHHHHhCcCH
Confidence 666666666666666665544332 555666666666666666666666665543
No 114
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.58 E-value=8.6e-07 Score=81.40 Aligned_cols=105 Identities=14% Similarity=0.117 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhC
Q 013843 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD 397 (435)
Q Consensus 318 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 397 (435)
+..+...|..++..|+|++|+..|++++...|... ....+.+++|.+|+++++|.+|+..+++.++.+
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~------------~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGP------------YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh------------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 45688899999999999999999999999888653 234567899999999999999999999999999
Q ss_pred CCCH---HHHHHHHHHHHhccc------------------HHHHHHHHHHHHHhCCCC
Q 013843 398 CHNV---KALYRRAQAYMEIAD------------------LILAELDIKKAIEADPQN 434 (435)
Q Consensus 398 p~~~---~a~~~~a~~~~~lg~------------------~~eA~~~~~~al~l~P~n 434 (435)
|+++ .++|.+|.++..++. ..+|+..|++.++.-|+.
T Consensus 100 P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S 157 (243)
T PRK10866 100 PTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNS 157 (243)
T ss_pred cCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCC
Confidence 8874 779999999766641 357889999999999975
No 115
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.58 E-value=3.6e-07 Score=67.17 Aligned_cols=70 Identities=24% Similarity=0.387 Sum_probs=63.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHH
Q 013843 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKAL 404 (435)
Q Consensus 325 g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 404 (435)
...+++.++|+.|+..+++++.+.|.+. .++..+|.|+.++|+|.+|+.+++++++.+|++..+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~---------------~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDP---------------ELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccc---------------hhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 4678999999999999999999999876 4489999999999999999999999999999998887
Q ss_pred HHHHH
Q 013843 405 YRRAQ 409 (435)
Q Consensus 405 ~~~a~ 409 (435)
..++.
T Consensus 67 ~~~a~ 71 (73)
T PF13371_consen 67 ALRAM 71 (73)
T ss_pred HHHHh
Confidence 66553
No 116
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.56 E-value=6e-07 Score=66.92 Aligned_cols=74 Identities=26% Similarity=0.335 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHh
Q 013843 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD 395 (435)
Q Consensus 316 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 395 (435)
..+..+.+.|..++..|+|++|+..|++++++...... .....+.++.|+|.||..+|++++|+.+++++++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~--------~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD--------DHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT--------HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC--------CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45778999999999999999999999999998533321 1234578899999999999999999999999998
Q ss_pred hC
Q 013843 396 CD 397 (435)
Q Consensus 396 ~~ 397 (435)
+.
T Consensus 75 i~ 76 (78)
T PF13424_consen 75 IF 76 (78)
T ss_dssp HH
T ss_pred hh
Confidence 63
No 117
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.54 E-value=5.2e-07 Score=75.42 Aligned_cols=68 Identities=13% Similarity=0.105 Sum_probs=65.1
Q ss_pred HHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Q 013843 368 SCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (435)
Q Consensus 368 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n~ 435 (435)
...+.+|.-++..|++++|...|+.+..+||.+...|+++|.++..+|+|.+|+..|.+|+.++|+|+
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp 103 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAP 103 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence 45778999999999999999999999999999999999999999999999999999999999999985
No 118
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=2.2e-07 Score=87.67 Aligned_cols=114 Identities=18% Similarity=0.166 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhh
Q 013843 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC 396 (435)
Q Consensus 317 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 396 (435)
.+.+++-+|..++...+.+.|+.+|+++|.+.|...... ..-..-.....+-+.|.-.++.|+|..|.+.|..||.+
T Consensus 202 n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk---~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~i 278 (486)
T KOG0550|consen 202 NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSK---SASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNI 278 (486)
T ss_pred hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHH---hHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcC
Confidence 456777788899999999999999999999988754221 11111222344668889999999999999999999999
Q ss_pred CCCC----HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q 013843 397 DCHN----VKALYRRAQAYMEIADLILAELDIKKAIEADPQ 433 (435)
Q Consensus 397 ~p~~----~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~ 433 (435)
+|+| ++.|+++|.++..+|+..+|+.+++.|++|||.
T Consensus 279 dP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s 319 (486)
T KOG0550|consen 279 DPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS 319 (486)
T ss_pred CccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH
Confidence 9986 578999999999999999999999999999974
No 119
>PLN02789 farnesyltranstransferase
Probab=98.52 E-value=6.3e-07 Score=85.45 Aligned_cols=92 Identities=13% Similarity=0.097 Sum_probs=84.4
Q ss_pred HHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHcc-CHHHHHHHHHHHHhhCCCCHHHHHH
Q 013843 328 LFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK-DYQGAIELCSKVLDCDCHNVKALYR 406 (435)
Q Consensus 328 ~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~-~~~~A~~~~~~al~~~p~~~~a~~~ 406 (435)
+...+++++|+..+.++|.++|.+. .++.+++.++.+++ ++++|+..++++++.+|++..+|+.
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~y---------------taW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~ 111 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNY---------------TVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHH 111 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhH---------------HHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHH
Confidence 5667899999999999999998865 56999999999998 6899999999999999999999999
Q ss_pred HHHHHHhcccH--HHHHHHHHHHHHhCCCC
Q 013843 407 RAQAYMEIADL--ILAELDIKKAIEADPQN 434 (435)
Q Consensus 407 ~a~~~~~lg~~--~eA~~~~~~al~l~P~n 434 (435)
++.++..+++. ++++..++++++++|.|
T Consensus 112 R~~~l~~l~~~~~~~el~~~~kal~~dpkN 141 (320)
T PLN02789 112 RRWLAEKLGPDAANKELEFTRKILSLDAKN 141 (320)
T ss_pred HHHHHHHcCchhhHHHHHHHHHHHHhCccc
Confidence 99999999874 78999999999999987
No 120
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.52 E-value=1.5e-07 Score=89.58 Aligned_cols=101 Identities=20% Similarity=0.215 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 013843 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCH 399 (435)
Q Consensus 320 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~ 399 (435)
++.+.||..|..|+|++|.+.|++||.-+.. +..+++|+|+.+.++|+.++|++++-+.-.+--+
T Consensus 492 a~~nkgn~~f~ngd~dka~~~ykeal~ndas---------------c~ealfniglt~e~~~~ldeald~f~klh~il~n 556 (840)
T KOG2003|consen 492 ALTNKGNIAFANGDLDKAAEFYKEALNNDAS---------------CTEALFNIGLTAEALGNLDEALDCFLKLHAILLN 556 (840)
T ss_pred HhhcCCceeeecCcHHHHHHHHHHHHcCchH---------------HHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHh
Confidence 4566788899999999999999999975433 4577999999999999999999999998887778
Q ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Q 013843 400 NVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (435)
Q Consensus 400 ~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n~ 435 (435)
++..++.+|.+|..+.+..+|+++|.++..+-|+|+
T Consensus 557 n~evl~qianiye~led~aqaie~~~q~~slip~dp 592 (840)
T KOG2003|consen 557 NAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDP 592 (840)
T ss_pred hHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCH
Confidence 999999999999999999999999999999999875
No 121
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.52 E-value=3.1e-07 Score=83.66 Aligned_cols=64 Identities=28% Similarity=0.360 Sum_probs=61.2
Q ss_pred HhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q 013843 370 WLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQ 433 (435)
Q Consensus 370 ~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~ 433 (435)
+-+-|.-+++.++|++|+..|.+||+++|.|+-.|.+||.+|.+||+|+.|+++++.|+.+||+
T Consensus 84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~ 147 (304)
T KOG0553|consen 84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH 147 (304)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH
Confidence 4477888999999999999999999999999999999999999999999999999999999996
No 122
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.50 E-value=1e-06 Score=95.98 Aligned_cols=99 Identities=21% Similarity=0.204 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 013843 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCH 399 (435)
Q Consensus 320 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~ 399 (435)
.+...|..+...|++++|+..|+++++..|.+. .++.+++..+.+.++ .+|+..+++++++.|+
T Consensus 772 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~---------------~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~ 835 (899)
T TIGR02917 772 LRTALAELYLAQKDYDKAIKHYRTVVKKAPDNA---------------VVLNNLAWLYLELKD-PRALEYAEKALKLAPN 835 (899)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCC
Confidence 445566667777777777777777777665432 446677777777777 6677777777777777
Q ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 013843 400 NVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 400 ~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
++..+..+|.++..+|++++|+..|+++++++|.+
T Consensus 836 ~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~ 870 (899)
T TIGR02917 836 IPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEA 870 (899)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 77777777777777788888888888888777764
No 123
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=1.9e-06 Score=79.06 Aligned_cols=103 Identities=20% Similarity=0.104 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHcc---CHHHHHHHHHHH
Q 013843 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK---DYQGAIELCSKV 393 (435)
Q Consensus 317 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~---~~~~A~~~~~~a 393 (435)
.++.+.-.|..|+..|++..|...|.+|+++.|+++ ..+.-+|.++..+. .-.++...++++
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~---------------~~~~g~aeaL~~~a~~~~ta~a~~ll~~a 219 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNP---------------EILLGLAEALYYQAGQQMTAKARALLRQA 219 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 345566789999999999999999999999999876 33556666655433 477899999999
Q ss_pred HhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 013843 394 LDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 394 l~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
|.+||.|..+++.+|..+++.|+|.+|...++..|.+.|.|
T Consensus 220 l~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 220 LALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999865
No 124
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.46 E-value=5e-07 Score=78.28 Aligned_cols=98 Identities=11% Similarity=0.049 Sum_probs=79.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCC---
Q 013843 324 EGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN--- 400 (435)
Q Consensus 324 ~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~--- 400 (435)
..+.+|-...|..+...+...++..+. .....+++++|.++..+++|++|+..|++++.+.|+.
T Consensus 5 ~~~~~~~~~~~~~~~~~l~~~~~~~~~-------------~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~ 71 (168)
T CHL00033 5 QRNDNFIDKTFTIVADILLRILPTTSG-------------EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDR 71 (168)
T ss_pred cccccccccccccchhhhhHhccCCch-------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhh
Confidence 345566677777777777555543222 2256779999999999999999999999999997763
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 013843 401 VKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 401 ~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
+.+|+++|.++..+|++++|++.|++++.++|.+
T Consensus 72 ~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~ 105 (168)
T CHL00033 72 SYILYNIGLIHTSNGEHTKALEYYFQALERNPFL 105 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Confidence 4689999999999999999999999999999864
No 125
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.43 E-value=1.6e-06 Score=73.53 Aligned_cols=86 Identities=28% Similarity=0.278 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHc----------cCHHHHHHHHHHHHhhCCCCHHH
Q 013843 334 YERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKL----------KDYQGAIELCSKVLDCDCHNVKA 403 (435)
Q Consensus 334 y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~----------~~~~~A~~~~~~al~~~p~~~~a 403 (435)
|+.|.+.|+.....+|.+. ..++|-|.+++.+ .-+++|+.-+++||.++|+...|
T Consensus 7 FE~ark~aea~y~~nP~Da---------------dnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdA 71 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDA---------------DNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDA 71 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-H---------------HHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHH
T ss_pred HHHHHHHHHHHHHhCcHhH---------------HHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHH
Confidence 6778888888888888764 3355555555444 34788999999999999999999
Q ss_pred HHHHHHHHHhccc-----------HHHHHHHHHHHHHhCCCC
Q 013843 404 LYRRAQAYMEIAD-----------LILAELDIKKAIEADPQN 434 (435)
Q Consensus 404 ~~~~a~~~~~lg~-----------~~eA~~~~~~al~l~P~n 434 (435)
++.+|.+|..++. |++|..+|++|..++|+|
T Consensus 72 lw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~n 113 (186)
T PF06552_consen 72 LWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNN 113 (186)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 9999999998876 789999999999999987
No 126
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.42 E-value=7.7e-06 Score=83.15 Aligned_cols=116 Identities=11% Similarity=0.017 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHcCC---HHHHHHHHHHHHHHhccCCC--------------CC---hHHHHHHHHH------------H
Q 013843 319 GRKKEEGNLLFKNGK---YERAGKKYNKAADCVSEDGS--------------FV---DDEQKLVKSL------------R 366 (435)
Q Consensus 319 ~~~~~~g~~~~~~g~---y~~A~~~y~~al~~~~~~~~--------------~~---~~~~~~~~~~------------~ 366 (435)
-.+.-+|..++..++ +.+|+.+|++|++++|.... +. .......... .
T Consensus 340 y~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~ 419 (517)
T PRK10153 340 LTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVL 419 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCC
Confidence 345556777766544 88999999999999887421 11 1111111111 1
Q ss_pred HHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Q 013843 367 VSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (435)
Q Consensus 367 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n~ 435 (435)
..+|.-+|..+...+++++|...+++|++++| +..+|..+|.++...|++++|.+.|++|+.++|.++
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 14466778888889999999999999999999 588999999999999999999999999999999864
No 127
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.40 E-value=1.5e-06 Score=65.89 Aligned_cols=66 Identities=38% Similarity=0.484 Sum_probs=63.1
Q ss_pred HHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 013843 369 CWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 369 ~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
+++++|.++...+++++|+..+.++++..|.+..+++.+|.++...+++++|++.|++++.+.|.+
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 67 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDN 67 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 478999999999999999999999999999999999999999999999999999999999998875
No 128
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.40 E-value=3e-06 Score=83.39 Aligned_cols=67 Identities=9% Similarity=0.002 Sum_probs=63.2
Q ss_pred HHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 013843 368 SCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 368 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
.++.-||..|...++|++|+++|+.||..+|++...|.|+|-++..-.+..+|+..|.+||+|.|+.
T Consensus 431 dvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y 497 (579)
T KOG1125|consen 431 DVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGY 497 (579)
T ss_pred hHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe
Confidence 4567788899999999999999999999999999999999999999999999999999999999973
No 129
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.39 E-value=1.6e-06 Score=89.71 Aligned_cols=103 Identities=20% Similarity=0.267 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 013843 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCH 399 (435)
Q Consensus 320 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~ 399 (435)
.+.-.++.+|-.|+|..+..++..++..... ..+.+..++++|.+|..+|+|++|..+|.++++.+++
T Consensus 272 ~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~------------~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d 339 (1018)
T KOG2002|consen 272 ALNHLANHFYFKKDYERVWHLAEHAIKNTEN------------KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADND 339 (1018)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHHhhhh------------hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCC
Confidence 4555678888888888888888888775422 2345677999999999999999999999999999999
Q ss_pred C-HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 013843 400 N-VKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 400 ~-~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
+ .-+++.+|+.|+..|++++|..+|+++++..|+|
T Consensus 340 ~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~ 375 (1018)
T KOG2002|consen 340 NFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNN 375 (1018)
T ss_pred CccccccchhHHHHHhchHHHHHHHHHHHHHhCcch
Confidence 8 8889999999999999999999999999999987
No 130
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.39 E-value=2.2e-06 Score=83.50 Aligned_cols=84 Identities=20% Similarity=0.197 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhC
Q 013843 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD 397 (435)
Q Consensus 318 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 397 (435)
+..+..+|..+++.|+|++|+..|++++.+.|... .+|+++|.+|+.+|+|++|+.+|+++++++
T Consensus 36 ~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~---------------~a~~~lg~~~~~lg~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 36 AELYADRAQANIKLGNFTEAVADANKAIELDPSLA---------------KAYLRKGTACMKLEEYQTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCH---------------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 45788899999999999999999999999988653 569999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhccc
Q 013843 398 CHNVKALYRRAQAYMEIAD 416 (435)
Q Consensus 398 p~~~~a~~~~a~~~~~lg~ 416 (435)
|++..+...++.|...+.+
T Consensus 101 P~~~~~~~~l~~~~~kl~~ 119 (356)
T PLN03088 101 PGDSRFTKLIKECDEKIAE 119 (356)
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 9999999999999777743
No 131
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.38 E-value=2.3e-06 Score=69.00 Aligned_cols=67 Identities=21% Similarity=0.241 Sum_probs=62.9
Q ss_pred HHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 013843 368 SCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN---VKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 368 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~---~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
..++++|..+.+.+++++|+..|.+++..+|++ ..+++.+|.++...+++++|+..|++++..+|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 72 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS 72 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC
Confidence 458899999999999999999999999999877 5799999999999999999999999999999875
No 132
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.37 E-value=2.4e-06 Score=76.45 Aligned_cols=99 Identities=13% Similarity=0.114 Sum_probs=82.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCH
Q 013843 322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNV 401 (435)
Q Consensus 322 ~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~ 401 (435)
...++.++..|+-+.++....+++...+.+. .++.-.+..++..|+|.+|+..++++..++|++.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~---------------~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~ 134 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDR---------------ELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDW 134 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccH---------------HHHHHHHHHHHHhcchHHHHHHHHHHhccCCCCh
Confidence 4456666677776666666666655554442 2344588999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Q 013843 402 KALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (435)
Q Consensus 402 ~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n~ 435 (435)
++|.-+|.+|.++|++++|...|.+++++.|+++
T Consensus 135 ~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p 168 (257)
T COG5010 135 EAWNLLGAALDQLGRFDEARRAYRQALELAPNEP 168 (257)
T ss_pred hhhhHHHHHHHHccChhHHHHHHHHHHHhccCCc
Confidence 9999999999999999999999999999999874
No 133
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.37 E-value=8.2e-07 Score=86.12 Aligned_cols=108 Identities=23% Similarity=0.128 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHc---cCHHHHHH
Q 013843 312 QGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKL---KDYQGAIE 388 (435)
Q Consensus 312 ~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~---~~~~~A~~ 388 (435)
.+..+.++..+.+||..|....+..|+..|.+++...|.. ..+|.|+|.++++. ++.-.|+.
T Consensus 368 ~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~---------------~~~l~nraa~lmkRkW~~d~~~Alr 432 (758)
T KOG1310|consen 368 YELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDA---------------IYLLENRAAALMKRKWRGDSYLALR 432 (758)
T ss_pred hhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccch---------------hHHHHhHHHHHHhhhccccHHHHHH
Confidence 4667889999999999999999999999999999987764 36699999999884 46788999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 013843 389 LCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 389 ~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
+|..|+.++|...||+|+++.++..++++.+|+++...+....|.|
T Consensus 433 Dch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 433 DCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTD 478 (758)
T ss_pred hHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchh
Confidence 9999999999999999999999999999999999988777777743
No 134
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.36 E-value=2.5e-06 Score=82.77 Aligned_cols=73 Identities=16% Similarity=0.206 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHH
Q 013843 313 GKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSK 392 (435)
Q Consensus 313 ~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 392 (435)
.....+..+.++|..|++.|+|++|+..|++||++.|++.+. ..+|+|+|.||.++|++++|+.++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA------------~~A~yNLAcaya~LGr~dEAla~Lrr 137 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEA------------QAAYYNKACCHAYREEGKKAADCLRT 137 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHH------------HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 345678899999999999999999999999999999886421 24699999999999999999999999
Q ss_pred HHhhC
Q 013843 393 VLDCD 397 (435)
Q Consensus 393 al~~~ 397 (435)
|+++.
T Consensus 138 ALels 142 (453)
T PLN03098 138 ALRDY 142 (453)
T ss_pred HHHhc
Confidence 99983
No 135
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.36 E-value=1.3e-06 Score=87.85 Aligned_cols=100 Identities=17% Similarity=0.272 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 013843 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDC 398 (435)
Q Consensus 319 ~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p 398 (435)
.+.+..|+..+++++|.+|..+++.+++++|-.. ..|+++|.|.+++++++.|..+|.+++.++|
T Consensus 486 rA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~---------------~~wf~~G~~ALqlek~q~av~aF~rcvtL~P 550 (777)
T KOG1128|consen 486 RAQRSLALLILSNKDFSEADKHLERSLEINPLQL---------------GTWFGLGCAALQLEKEQAAVKAFHRCVTLEP 550 (777)
T ss_pred HHHHhhccccccchhHHHHHHHHHHHhhcCccch---------------hHHHhccHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 3445556666788999999999999999987654 5599999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q 013843 399 HNVKALYRRAQAYMEIADLILAELDIKKAIEADPQ 433 (435)
Q Consensus 399 ~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~ 433 (435)
++..+|.+++.+|..+++..+|...+++|++.+-.
T Consensus 551 d~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~ 585 (777)
T KOG1128|consen 551 DNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ 585 (777)
T ss_pred CchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC
Confidence 99999999999999999999999999999987743
No 136
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.36 E-value=8.1e-06 Score=79.61 Aligned_cols=114 Identities=12% Similarity=-0.049 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCC-------------Ch--HHH-HHH------HHHHHHHHhHHHHHH
Q 013843 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSF-------------VD--DEQ-KLV------KSLRVSCWLNSAACC 377 (435)
Q Consensus 320 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~-------------~~--~~~-~~~------~~~~~~~~~nla~~~ 377 (435)
...-.+..++..|++++|+..++++++..|.+... .. ... +.+ .......+.++|.++
T Consensus 45 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~ 124 (355)
T cd05804 45 RAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGL 124 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHH
Confidence 45567889999999999999999999988765411 00 000 000 011123556788899
Q ss_pred HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q 013843 378 LKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQ 433 (435)
Q Consensus 378 ~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~ 433 (435)
..+|++++|+..++++++++|+++.++..+|.++..+|++++|++.+++++.+.|.
T Consensus 125 ~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~ 180 (355)
T cd05804 125 EEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC 180 (355)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC
Confidence 99999999999999999999999999999999999999999999999999998874
No 137
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.33 E-value=7e-06 Score=82.24 Aligned_cols=110 Identities=21% Similarity=0.160 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHH
Q 013843 315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVL 394 (435)
Q Consensus 315 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 394 (435)
...+..+.++|..|++.|+|++|..+|++|+++........ .......+.|++..+..++++++|+.++.+++
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~-------~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al 352 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGAS-------HPEVAAQLSELAAILQSMNEYEEAKKLLQKAL 352 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccC-------hHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 45677899999999999999999999999999987632222 23356778999999999999999999999999
Q ss_pred hhC--------CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Q 013843 395 DCD--------CHNVKALYRRAQAYMEIADLILAELDIKKAIEAD 431 (435)
Q Consensus 395 ~~~--------p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~ 431 (435)
++- +.-++.+-++|.+|+.+|+|++|.+.|++|+.+.
T Consensus 353 ~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~ 397 (508)
T KOG1840|consen 353 KIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL 397 (508)
T ss_pred HHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 862 2346889999999999999999999999999864
No 138
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.32 E-value=7e-06 Score=80.06 Aligned_cols=100 Identities=16% Similarity=0.033 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhC
Q 013843 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD 397 (435)
Q Consensus 318 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 397 (435)
...+...|..+...|++++|+..|++++++.|.+. .++..+|.++...|++++|+.++.+++...
T Consensus 114 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~---------------~~~~~la~i~~~~g~~~eA~~~l~~~l~~~ 178 (355)
T cd05804 114 WYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDA---------------WAVHAVAHVLEMQGRFKEGIAFMESWRDTW 178 (355)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc---------------HHHHHHHHHHHHcCCHHHHHHHHHhhhhcc
Confidence 34555778899999999999999999999988764 558899999999999999999999999998
Q ss_pred CCCH----HHHHHHHHHHHhcccHHHHHHHHHHHHHhCC
Q 013843 398 CHNV----KALYRRAQAYMEIADLILAELDIKKAIEADP 432 (435)
Q Consensus 398 p~~~----~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P 432 (435)
|.++ ..|+.+|.++..+|++++|+..|++++...|
T Consensus 179 ~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 179 DCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred CCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 7433 4567899999999999999999999987666
No 139
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.32 E-value=4.4e-06 Score=89.12 Aligned_cols=118 Identities=12% Similarity=0.032 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCC-C-----------hHHH-HHHHHH------HHHHHhHHHHHH
Q 013843 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSF-V-----------DDEQ-KLVKSL------RVSCWLNSAACC 377 (435)
Q Consensus 317 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~-~-----------~~~~-~~~~~~------~~~~~~nla~~~ 377 (435)
.+...+..+...+++|+|+.|+..|+++++..|..... . .++. ..++.. ....+..+|.+|
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly 112 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAY 112 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence 45578889999999999999999999999999886311 0 0111 111111 122334447788
Q ss_pred HHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 013843 378 LKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 378 ~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
..+|+|++|+..|+++++.+|+++.+++.++.++..+++.++|++.++++...+|.+
T Consensus 113 ~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~ 169 (822)
T PRK14574 113 RNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTV 169 (822)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcch
Confidence 899999999999999999999999999999999999999999999999999998875
No 140
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=98.32 E-value=4.2e-05 Score=64.50 Aligned_cols=113 Identities=18% Similarity=0.092 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCC-------CChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHH
Q 013843 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGS-------FVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIEL 389 (435)
Q Consensus 317 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~-------~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~ 389 (435)
....+...|......++...++..+.+++.+...+.- +.......++.....++..++..+...+++++|+..
T Consensus 5 ~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~ 84 (146)
T PF03704_consen 5 RFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRL 84 (146)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 3455666777888889999999999999998754321 112445678888888999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 013843 390 CSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIE 429 (435)
Q Consensus 390 ~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~ 429 (435)
|.+++..+|-+..+|..+-.+|..+|+..+|++.|+++..
T Consensus 85 ~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 85 LQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998754
No 141
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.31 E-value=6.7e-06 Score=75.64 Aligned_cols=98 Identities=17% Similarity=0.139 Sum_probs=89.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 013843 321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN 400 (435)
Q Consensus 321 ~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~ 400 (435)
..+.|..|++.|-+.+|...++.+|+..|. +..++-++.+|.+..+...|+..+.+.|+.-|.+
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q~~~----------------~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~ 289 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQFPH----------------PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFD 289 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhcCCc----------------hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCch
Confidence 346799999999999999999999998764 3558889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 013843 401 VKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 401 ~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
+..+..+|.++..++++++|.+.|+.+++++|.|
T Consensus 290 VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~n 323 (478)
T KOG1129|consen 290 VTYLLGQARIHEAMEQQEDALQLYKLVLKLHPIN 323 (478)
T ss_pred hhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCcc
Confidence 9999999999999999999999999999999987
No 142
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.30 E-value=1.2e-06 Score=53.87 Aligned_cols=34 Identities=32% Similarity=0.480 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 013843 401 VKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 401 ~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
+++|+++|.+|..++++++|+.+|++|++++|+|
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 3566777777777777777777777777777754
No 143
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.28 E-value=7.3e-06 Score=82.08 Aligned_cols=108 Identities=17% Similarity=0.132 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhh
Q 013843 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC 396 (435)
Q Consensus 317 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 396 (435)
........|..|+.+|+|+.|+..|++|++......... .........++|..|..+++|.+|+..|++||.+
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~-------hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i 270 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLK-------HLVVASMLNILALVYRSLGKYDEAVNLYEEALTI 270 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCcc-------CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 344555599999999999999999999999854332210 1223344456999999999999999999999976
Q ss_pred --------CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Q 013843 397 --------DCHNVKALYRRAQAYMEIADLILAELDIKKAIEAD 431 (435)
Q Consensus 397 --------~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~ 431 (435)
+|.-+.++.++|.+|...|+|++|..++++|+++-
T Consensus 271 ~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~ 313 (508)
T KOG1840|consen 271 REEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIY 313 (508)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence 34456889999999999999999999999999873
No 144
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.27 E-value=5.2e-06 Score=72.22 Aligned_cols=69 Identities=16% Similarity=0.164 Sum_probs=63.4
Q ss_pred HHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 013843 366 RVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN---VKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 366 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~---~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
.+.+++++|.++...+++++|+.+|+++++..|+. ..+++.+|.++..+|++++|+..|++++.++|++
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 105 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ 105 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 45679999999999999999999999999987753 5789999999999999999999999999999975
No 145
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.26 E-value=7.9e-06 Score=84.17 Aligned_cols=100 Identities=21% Similarity=0.230 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhC
Q 013843 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD 397 (435)
Q Consensus 318 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 397 (435)
...+..+|..|-++|+.++|+..+..|-.++|.+.++ |..+|....+++++.+|+-+|.+||+++
T Consensus 173 ~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~---------------W~~ladls~~~~~i~qA~~cy~rAI~~~ 237 (895)
T KOG2076|consen 173 PIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYEL---------------WKRLADLSEQLGNINQARYCYSRAIQAN 237 (895)
T ss_pred hhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHH---------------HHHHHHHHHhcccHHHHHHHHHHHHhcC
Confidence 4567888999999999999999999999999988643 7888999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC
Q 013843 398 CHNVKALYRRAQAYMEIADLILAELDIKKAIEADP 432 (435)
Q Consensus 398 p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P 432 (435)
|.+.+..++++..|.++|++..|+..|.+++.++|
T Consensus 238 p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 238 PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 99999999999999999999999999999999999
No 146
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.23 E-value=1.5e-05 Score=77.24 Aligned_cols=61 Identities=28% Similarity=0.152 Sum_probs=30.8
Q ss_pred HhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q 013843 370 WLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEA 430 (435)
Q Consensus 370 ~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l 430 (435)
..|+|.+|++.|++++|+...+..+..+|+++..|..+|++|..+|+-.+|...+-..+.+
T Consensus 377 ~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~ 437 (484)
T COG4783 377 QLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYAL 437 (484)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHh
Confidence 4455555555555555555555555555555555555555555555555554444444433
No 147
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.22 E-value=3.2e-06 Score=51.83 Aligned_cols=34 Identities=35% Similarity=0.448 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 013843 401 VKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 401 ~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
+++|+.+|.+++.+|++++|+++|+++++++|+|
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4678888888888888888888888888888876
No 148
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.21 E-value=1.6e-05 Score=77.04 Aligned_cols=105 Identities=16% Similarity=0.087 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHh
Q 013843 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD 395 (435)
Q Consensus 316 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 395 (435)
......+..+..++..|+++.|...++..+...|++. ..+..++.++++.++.++|.+.+++++.
T Consensus 304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~---------------~~~~~~~~i~~~~nk~~~A~e~~~kal~ 368 (484)
T COG4783 304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNP---------------YYLELAGDILLEANKAKEAIERLKKALA 368 (484)
T ss_pred cchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence 3455778899999999999999999999998888765 3466778899999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Q 013843 396 CDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (435)
Q Consensus 396 ~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n~ 435 (435)
++|+..-..+++|++|++.|++.+|+..++..+.-+|+|+
T Consensus 369 l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp 408 (484)
T COG4783 369 LDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDP 408 (484)
T ss_pred cCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCc
Confidence 9999999999999999999999999999999999999885
No 149
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.21 E-value=1.3e-06 Score=53.52 Aligned_cols=34 Identities=21% Similarity=0.194 Sum_probs=31.9
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHH
Q 013843 389 LCSKVLDCDCHNVKALYRRAQAYMEIADLILAEL 422 (435)
Q Consensus 389 ~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~ 422 (435)
+|++||+++|+|+.+|+++|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 4789999999999999999999999999999973
No 150
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=98.21 E-value=2.2e-05 Score=74.48 Aligned_cols=113 Identities=12% Similarity=0.150 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCC---hHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHH
Q 013843 315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFV---DDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCS 391 (435)
Q Consensus 315 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~---~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~ 391 (435)
-++.+.....|..+|++++|..|+-.|.-||+++..-.... ......+......+.-.+..||+++++.+.|+++..
T Consensus 173 Dkwl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~h 252 (569)
T PF15015_consen 173 DKWLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSH 252 (569)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHh
Confidence 35566677888999999999999999999999986532211 122334445555667789999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 013843 392 KVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKA 427 (435)
Q Consensus 392 ~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~a 427 (435)
+.+-++|.+..-+.+.|.|+..+.+|.+|-+.+.-|
T Consensus 253 rsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 253 RSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred hhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998766554
No 151
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.18 E-value=1.2e-05 Score=78.39 Aligned_cols=91 Identities=19% Similarity=0.196 Sum_probs=81.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH
Q 013843 323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVK 402 (435)
Q Consensus 323 ~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~ 402 (435)
-.+..++..++-.+|++...++|...|.+. .++...|..+++.++++.|+..+++|.++.|++.+
T Consensus 205 ~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~---------------~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~ 269 (395)
T PF09295_consen 205 LLARVYLLMNEEVEAIRLLNEALKENPQDS---------------ELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFE 269 (395)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHH
Confidence 357777888899999999999998877653 55778899999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHH
Q 013843 403 ALYRRAQAYMEIADLILAELDIKKAI 428 (435)
Q Consensus 403 a~~~~a~~~~~lg~~~eA~~~~~~al 428 (435)
+|+.+|.+|..+|+|++|+..++.+-
T Consensus 270 ~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 270 TWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999998887554
No 152
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.17 E-value=1.5e-05 Score=82.81 Aligned_cols=108 Identities=19% Similarity=0.098 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHH
Q 013843 313 GKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSK 392 (435)
Q Consensus 313 ~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 392 (435)
...-.++.++..|..++.+|+|++|..+|.+++...+.... -.++-+|+.|++.|+++.|+.++++
T Consensus 302 ~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~--------------l~~~GlgQm~i~~~dle~s~~~fEk 367 (1018)
T KOG2002|consen 302 NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFV--------------LPLVGLGQMYIKRGDLEESKFCFEK 367 (1018)
T ss_pred hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcc--------------ccccchhHHHHHhchHHHHHHHHHH
Confidence 34456778999999999999999999999999999887642 3388999999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHhcc----cHHHHHHHHHHHHHhCCCC
Q 013843 393 VLDCDCHNVKALYRRAQAYMEIA----DLILAELDIKKAIEADPQN 434 (435)
Q Consensus 393 al~~~p~~~~a~~~~a~~~~~lg----~~~eA~~~~~~al~l~P~n 434 (435)
+++..|++.+...-+|..|...+ ..+.|...+.++++..|.|
T Consensus 368 v~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d 413 (1018)
T KOG2002|consen 368 VLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVD 413 (1018)
T ss_pred HHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999886 6788999999999988865
No 153
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.17 E-value=2.2e-05 Score=72.24 Aligned_cols=117 Identities=19% Similarity=0.147 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCC---------ChHHH---------------HHHHHHHHHHHhH
Q 013843 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSF---------VDDEQ---------------KLVKSLRVSCWLN 372 (435)
Q Consensus 317 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~---------~~~~~---------------~~~~~~~~~~~~n 372 (435)
+..++.+.|..|+..|-|++|...|....+........ ...+| +......+..|+.
T Consensus 106 r~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCE 185 (389)
T COG2956 106 RLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCE 185 (389)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHH
Confidence 35667777777888888887777776655411100000 00111 1233445677899
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q 013843 373 SAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQ 433 (435)
Q Consensus 373 la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~ 433 (435)
+|..+....+.++|+....+|++.+|+++.|-..+|.+++..|+|+.|.+.++++++-||.
T Consensus 186 LAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~ 246 (389)
T COG2956 186 LAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPE 246 (389)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChH
Confidence 9999999999999999999999999999999999999999999999999999999999885
No 154
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.16 E-value=1e-05 Score=76.31 Aligned_cols=104 Identities=21% Similarity=0.260 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhC
Q 013843 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD 397 (435)
Q Consensus 318 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 397 (435)
...+......+...++++++...+.++....+... ...++..+|.++.+.|++++|+.++++|++++
T Consensus 110 ~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-------------~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~ 176 (280)
T PF13429_consen 110 PRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPD-------------SARFWLALAEIYEQLGDPDKALRDYRKALELD 176 (280)
T ss_dssp --------H-HHHTT-HHHHHHHHHHHHH-T---T--------------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-
T ss_pred cchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCC-------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 34445566678899999999999999775432111 24668899999999999999999999999999
Q ss_pred CCCHHH----------------------------------HHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 013843 398 CHNVKA----------------------------------LYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 398 p~~~~a----------------------------------~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
|++..+ +..+|.++..+|++++|+.+|+++++.+|+|
T Consensus 177 P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d 247 (280)
T PF13429_consen 177 PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD 247 (280)
T ss_dssp TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccc
Confidence 998644 3446667777777777777777777777765
No 155
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.11 E-value=2.9e-05 Score=73.20 Aligned_cols=110 Identities=25% Similarity=0.359 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHH
Q 013843 315 IEAAGRKKEEGNLLFKN-GKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKV 393 (435)
Q Consensus 315 ~~~a~~~~~~g~~~~~~-g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 393 (435)
...+..+.+.|..|... +++++|+.+|++|+++...... ......++.++|.++.++++|++|+..|+++
T Consensus 111 ~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~---------~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~ 181 (282)
T PF14938_consen 111 SQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGS---------PHSAAECLLKAADLYARLGRYEEAIEIYEEV 181 (282)
T ss_dssp HHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT----------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC---------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34566778888888888 9999999999999999765432 2345677899999999999999999999999
Q ss_pred HhhCCC------CH-HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q 013843 394 LDCDCH------NV-KALYRRAQAYMEIADLILAELDIKKAIEADPQ 433 (435)
Q Consensus 394 l~~~p~------~~-~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~ 433 (435)
....-+ ++ +.+++.+.|++.+|+...|...|++....+|.
T Consensus 182 ~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 182 AKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp HHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred HHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 875322 13 34678888999999999999999999999985
No 156
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.09 E-value=2.9e-05 Score=82.95 Aligned_cols=101 Identities=5% Similarity=-0.080 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 013843 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDC 398 (435)
Q Consensus 319 ~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p 398 (435)
..+...|..+...|+|++|+..|+++++..|.+. .++.-++..|...+++++|+..+.+++..+|
T Consensus 103 ~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~---------------~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp 167 (822)
T PRK14574 103 RGLASAARAYRNEKRWDQALALWQSSLKKDPTNP---------------DLISGMIMTQADAGRGGVVLKQATELAERDP 167 (822)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---------------HHHHHHHHHHhhcCCHHHHHHHHHHhcccCc
Confidence 3455567788899999999999999999999875 3466778999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Q 013843 399 HNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (435)
Q Consensus 399 ~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n~ 435 (435)
.+... ..++.++..++++.+|++.|+++++++|+|.
T Consensus 168 ~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~ 203 (822)
T PRK14574 168 TVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSE 203 (822)
T ss_pred chHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCH
Confidence 86554 4456666667888779999999999999873
No 157
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.09 E-value=5.7e-06 Score=50.76 Aligned_cols=33 Identities=27% Similarity=0.494 Sum_probs=30.1
Q ss_pred HHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 013843 368 SCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN 400 (435)
Q Consensus 368 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~ 400 (435)
.+|+++|.+|..+++|++|+.+|++||+++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 569999999999999999999999999999974
No 158
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.09 E-value=9.2e-05 Score=62.37 Aligned_cols=102 Identities=17% Similarity=0.076 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHH
Q 013843 313 GKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSK 392 (435)
Q Consensus 313 ~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 392 (435)
...+.+...+......+..+++..+...+.+.+.-.|... ....+.+.+|.+++..|++++|+..++.
T Consensus 6 ~~~~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~------------ya~~A~l~lA~~~~~~g~~~~A~~~l~~ 73 (145)
T PF09976_consen 6 QQAEQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSP------------YAALAALQLAKAAYEQGDYDEAKAALEK 73 (145)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCh------------HHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3456677788888888899999999998999888776642 2356688899999999999999999999
Q ss_pred HHhhCCCC---HHHHHHHHHHHHhcccHHHHHHHHHH
Q 013843 393 VLDCDCHN---VKALYRRAQAYMEIADLILAELDIKK 426 (435)
Q Consensus 393 al~~~p~~---~~a~~~~a~~~~~lg~~~eA~~~~~~ 426 (435)
++...|+. ..+.+++|.+++.+|++++|+..++.
T Consensus 74 ~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~ 110 (145)
T PF09976_consen 74 ALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ 110 (145)
T ss_pred HHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 99987655 46899999999999999999999966
No 159
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.07 E-value=1.4e-05 Score=73.54 Aligned_cols=105 Identities=15% Similarity=0.149 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhh
Q 013843 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC 396 (435)
Q Consensus 317 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 396 (435)
..+.+.+.|..++-.++|+-++..|++|+........ .+.+|+|++.+..-.|++.-|..+++-+|..
T Consensus 357 speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~------------aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~ 424 (478)
T KOG1129|consen 357 SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQ------------AADVWYNLGFVAVTIGDFNLAKRCFRLALTS 424 (478)
T ss_pred ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcch------------hhhhhhccceeEEeccchHHHHHHHHHHhcc
Confidence 3456778899999999999999999999998764432 3678999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q 013843 397 DCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQ 433 (435)
Q Consensus 397 ~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~ 433 (435)
|+++..++.++|..-.+.|+.++|+..++.|-.+.|.
T Consensus 425 d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 425 DAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 9999999999999999999999999999999998885
No 160
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=1.5e-05 Score=78.23 Aligned_cols=96 Identities=17% Similarity=0.159 Sum_probs=79.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCC----
Q 013843 324 EGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCH---- 399 (435)
Q Consensus 324 ~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~---- 399 (435)
.|..|.+.+++..|-+.|.+|+.+.|.++ -++..+|.+.++.+.|.+|+.++..+|+.-+.
T Consensus 386 lgmey~~t~n~kLAe~Ff~~A~ai~P~Dp---------------lv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e 450 (611)
T KOG1173|consen 386 LGMEYMRTNNLKLAEKFFKQALAIAPSDP---------------LVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNE 450 (611)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCCcc---------------hhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccc
Confidence 35667777788888888888888888776 44788999999999999999999999954221
Q ss_pred ---CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 013843 400 ---NVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 400 ---~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
....+.++|.++.+++++++|+.+|+++|.+.|.|
T Consensus 451 ~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~ 488 (611)
T KOG1173|consen 451 KIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKD 488 (611)
T ss_pred ccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCc
Confidence 23458999999999999999999999999999986
No 161
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.05 E-value=5.6e-05 Score=67.42 Aligned_cols=114 Identities=21% Similarity=0.200 Sum_probs=86.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCC-------------hHHHHHHHHHH------HHHHhHHHHHHHHcc
Q 013843 321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFV-------------DDEQKLVKSLR------VSCWLNSAACCLKLK 381 (435)
Q Consensus 321 ~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~-------------~~~~~~~~~~~------~~~~~nla~~~~~~~ 381 (435)
.+-.|..+-..|+|++|++.|...|+-+|.+.... .+-.+++.++. ..+|..+|..|+.++
T Consensus 89 ~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~ 168 (289)
T KOG3060|consen 89 GKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEG 168 (289)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHh
Confidence 34455666667778888888888777666543211 11112222221 256889999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHhCCCC
Q 013843 382 DYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIA---DLILAELDIKKAIEADPQN 434 (435)
Q Consensus 382 ~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg---~~~eA~~~~~~al~l~P~n 434 (435)
+|++|.-++++++-+.|.++-.+.|+|..++-+| +++-|+++|.++++++|.|
T Consensus 169 ~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~ 224 (289)
T KOG3060|consen 169 DFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKN 224 (289)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHh
Confidence 9999999999999999999999999999998776 6788999999999999854
No 162
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.01 E-value=3.7e-05 Score=81.60 Aligned_cols=112 Identities=14% Similarity=0.015 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCC--------------------------h-HHHHHHHHHHH--
Q 013843 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFV--------------------------D-DEQKLVKSLRV-- 367 (435)
Q Consensus 317 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~--------------------------~-~~~~~~~~~~~-- 367 (435)
....+......+...+++++|+..+..+++..|....+. . ..+ .+-+...
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~-~~ve~~~~~ 108 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKW-AIVEHICDK 108 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccch-hHHHHHHHH
Confidence 345666677777788888888888888888776643310 0 011 1111111
Q ss_pred --------HHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q 013843 368 --------SCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEA 430 (435)
Q Consensus 368 --------~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l 430 (435)
.+++.+|.||-++|++++|...|+++|+++|+|+.++.++|..|... +.++|++++.+|++.
T Consensus 109 i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 109 ILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred HHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 57888999999999999999999999999999999999999999999 999999999999875
No 163
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.01 E-value=5.5e-05 Score=71.34 Aligned_cols=105 Identities=24% Similarity=0.230 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHc-cCHHHHHHHHHHHHh
Q 013843 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKL-KDYQGAIELCSKVLD 395 (435)
Q Consensus 317 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~-~~~~~A~~~~~~al~ 395 (435)
.+..+.+.++. ++..++++|+..|++|+++...... ....+.++.++|.+|... +++++|+.+|.+|++
T Consensus 74 Aa~~~~~Aa~~-~k~~~~~~Ai~~~~~A~~~y~~~G~---------~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~ 143 (282)
T PF14938_consen 74 AAKAYEEAANC-YKKGDPDEAIECYEKAIEIYREAGR---------FSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAE 143 (282)
T ss_dssp HHHHHHHHHHH-HHHTTHHHHHHHHHHHHHHHHHCT----------HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHhhCHHHHHHHHHHHHHHHHhcCc---------HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444443333 3444777777777777776644332 244567889999999998 999999999999998
Q ss_pred hCC--CC----HHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Q 013843 396 CDC--HN----VKALYRRAQAYMEIADLILAELDIKKAIEAD 431 (435)
Q Consensus 396 ~~p--~~----~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~ 431 (435)
+-. +. ..++.+.|.++..+++|++|++.|+++....
T Consensus 144 ~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~ 185 (282)
T PF14938_consen 144 LYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKC 185 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTC
T ss_pred HHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 721 12 4667899999999999999999999988753
No 164
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=98.01 E-value=0.00059 Score=53.64 Aligned_cols=108 Identities=17% Similarity=0.195 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhh---
Q 013843 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC--- 396 (435)
Q Consensus 320 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~--- 396 (435)
.....|...+..|-|++|...|++|++.....+. ++.-...-.-+-||.-++.++..+++|++++...+++|..
T Consensus 11 ~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~---eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNR 87 (144)
T PF12968_consen 11 MALSDAERQLQDGAYEEAAASCRKAMEVSRTIPA---EEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNR 87 (144)
T ss_dssp HHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-T---TS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCh---HhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhh
Confidence 3445677788899999999999999998765442 2222333445667888999999999999999999999864
Q ss_pred ----CCCC----HHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q 013843 397 ----DCHN----VKALYRRAQAYMEIADLILAELDIKKAIEA 430 (435)
Q Consensus 397 ----~p~~----~~a~~~~a~~~~~lg~~~eA~~~~~~al~l 430 (435)
+.+. ..+-|++|.++..+|+.++|+..|+++-++
T Consensus 88 RGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 88 RGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp H--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 4433 466799999999999999999999998764
No 165
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.00 E-value=1e-05 Score=76.52 Aligned_cols=109 Identities=15% Similarity=0.199 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHH
Q 013843 313 GKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSK 392 (435)
Q Consensus 313 ~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 392 (435)
++..+...+-+.||.||-.|+|++|+.+-+.-|++...-.+ +.-...++.|+|.||.-+++++.|+++|++
T Consensus 190 Dr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGD---------rAaeRRA~sNlgN~hiflg~fe~A~ehYK~ 260 (639)
T KOG1130|consen 190 DRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGD---------RAAERRAHSNLGNCHIFLGNFELAIEHYKL 260 (639)
T ss_pred hHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhh---------HHHHHHhhcccchhhhhhcccHhHHHHHHH
Confidence 34444455556677777778888888777777766543211 111234577777777777777777777777
Q ss_pred HHhhC----CC--CHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q 013843 393 VLDCD----CH--NVKALYRRAQAYMEIADLILAELDIKKAIEA 430 (435)
Q Consensus 393 al~~~----p~--~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l 430 (435)
++.+. .. .+...|.+|.+|.-+.+++.|+.++.+-|.+
T Consensus 261 tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaI 304 (639)
T KOG1130|consen 261 TLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAI 304 (639)
T ss_pred HHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 65442 11 2344667777777777777777777766654
No 166
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.99 E-value=1.8e-05 Score=51.75 Aligned_cols=42 Identities=26% Similarity=0.269 Sum_probs=38.9
Q ss_pred HHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 013843 368 SCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQ 409 (435)
Q Consensus 368 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~ 409 (435)
.+++.+|..|..+|++++|+..|+++++.+|+++.+++.+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 357899999999999999999999999999999999999885
No 167
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.98 E-value=8.9e-05 Score=66.17 Aligned_cols=59 Identities=19% Similarity=0.130 Sum_probs=47.5
Q ss_pred HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Q 013843 377 CLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (435)
Q Consensus 377 ~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n~ 435 (435)
...+|+--+||+....-|+.-+.+..||..++.+|..+|+|++|.-+|+..+-+.|.|+
T Consensus 130 lka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~ 188 (289)
T KOG3060|consen 130 LKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNP 188 (289)
T ss_pred HHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcH
Confidence 33455555666666666666666778999999999999999999999999999999774
No 168
>PRK11906 transcriptional regulator; Provisional
Probab=97.97 E-value=4.7e-05 Score=74.21 Aligned_cols=87 Identities=14% Similarity=0.046 Sum_probs=79.6
Q ss_pred CCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013843 332 GKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAY 411 (435)
Q Consensus 332 g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~ 411 (435)
.+-.+|.++-.+|+++++.++ .++..+|.++...++++.|+..+++|+.++|+.+.+||..|..+
T Consensus 318 ~~~~~a~~~A~rAveld~~Da---------------~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~ 382 (458)
T PRK11906 318 LAAQKALELLDYVSDITTVDG---------------KILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVH 382 (458)
T ss_pred HHHHHHHHHHHHHHhcCCCCH---------------HHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHH
Confidence 345678888888999988775 56888999999999999999999999999999999999999999
Q ss_pred HhcccHHHHHHHHHHHHHhCCC
Q 013843 412 MEIADLILAELDIKKAIEADPQ 433 (435)
Q Consensus 412 ~~lg~~~eA~~~~~~al~l~P~ 433 (435)
...|+.++|++.+++|++++|.
T Consensus 383 ~~~G~~~~a~~~i~~alrLsP~ 404 (458)
T PRK11906 383 FHNEKIEEARICIDKSLQLEPR 404 (458)
T ss_pred HHcCCHHHHHHHHHHHhccCch
Confidence 9999999999999999999995
No 169
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.95 E-value=6.5e-05 Score=74.85 Aligned_cols=114 Identities=11% Similarity=0.006 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCC-----------ChHH----------HHHHHHHHH--HHHhH
Q 013843 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSF-----------VDDE----------QKLVKSLRV--SCWLN 372 (435)
Q Consensus 316 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~-----------~~~~----------~~~~~~~~~--~~~~n 372 (435)
+........|..+...|++++|+..++++++..|++... ..++ +-....... .++..
T Consensus 261 ~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~s 340 (409)
T TIGR00540 261 HNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRA 340 (409)
T ss_pred CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHH
Confidence 356677778899999999999999999999988876521 1111 111111223 45667
Q ss_pred HHHHHHHccCHHHHHHHHH--HHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q 013843 373 SAACCLKLKDYQGAIELCS--KVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEA 430 (435)
Q Consensus 373 la~~~~~~~~~~~A~~~~~--~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l 430 (435)
+|..++++++|++|.++++ ++++.+|++.. +..+|.++.++|+.++|.+.+++++.+
T Consensus 341 Lg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 341 LGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7888888888888888888 57777776655 448888888888888888888887654
No 170
>PRK11906 transcriptional regulator; Provisional
Probab=97.95 E-value=0.00011 Score=71.81 Aligned_cols=90 Identities=17% Similarity=0.083 Sum_probs=73.7
Q ss_pred CHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHc---------cCHHHHHHHHHHHHhhCCCCHHH
Q 013843 333 KYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKL---------KDYQGAIELCSKVLDCDCHNVKA 403 (435)
Q Consensus 333 ~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~---------~~~~~A~~~~~~al~~~p~~~~a 403 (435)
..++|+.+|.+|+...+.++.+ +.+|.-+|.||+.. ..-.+|....++|++++|.++.|
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~------------a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a 340 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLK------------TECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKI 340 (458)
T ss_pred HHHHHHHHHHHHhhcccCCccc------------HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHH
Confidence 3467888899999333333332 46678888887764 24567999999999999999999
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 013843 404 LYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 404 ~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
++.+|.++...++++.|...|++|+.++|+.
T Consensus 341 ~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~ 371 (458)
T PRK11906 341 LAIMGLITGLSGQAKVSHILFEQAKIHSTDI 371 (458)
T ss_pred HHHHHHHHHhhcchhhHHHHHHHHhhcCCcc
Confidence 9999999999999999999999999999985
No 171
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.93 E-value=0.00018 Score=71.65 Aligned_cols=117 Identities=21% Similarity=0.190 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCC-----------Ch-HHH-HHHHH---H----HHHHHhHH
Q 013843 314 KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSF-----------VD-DEQ-KLVKS---L----RVSCWLNS 373 (435)
Q Consensus 314 ~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~-----------~~-~~~-~~~~~---~----~~~~~~nl 373 (435)
+.+++......|...+..|+|+.|.+...++.+..|..... .+ +.. ..+.. . ...+....
T Consensus 80 ~~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~ 159 (409)
T TIGR00540 80 KRRKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIAR 159 (409)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHH
Confidence 45577778888888999999999999988888765542100 00 000 00000 0 01122334
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q 013843 374 AACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEA 430 (435)
Q Consensus 374 a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l 430 (435)
+..++..+++++|+..+++.++..|+++.++..++.++...|+|++|++.+.+.++.
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~ 216 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKA 216 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 666677777777777777777777777777777777777777777777777777655
No 172
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.91 E-value=0.00016 Score=66.68 Aligned_cols=105 Identities=18% Similarity=0.143 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHH
Q 013843 314 KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKV 393 (435)
Q Consensus 314 ~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 393 (435)
.++.++-+-+.|..+....+.++|+..+.+|+..+|.+.. +-..+|.+++..|+|++|++.++.+
T Consensus 176 ~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvR---------------Asi~lG~v~~~~g~y~~AV~~~e~v 240 (389)
T COG2956 176 RVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVR---------------ASIILGRVELAKGDYQKAVEALERV 240 (389)
T ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcccee---------------hhhhhhHHHHhccchHHHHHHHHHH
Confidence 4566777888888899999999999999999999887653 3557899999999999999999999
Q ss_pred HhhCCCC-HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q 013843 394 LDCDCHN-VKALYRRAQAYMEIADLILAELDIKKAIEADPQ 433 (435)
Q Consensus 394 l~~~p~~-~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~ 433 (435)
++.||.. +.++-.+..||.++|+.++.+..+.++.+..++
T Consensus 241 ~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 241 LEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred HHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 9999987 578888999999999999999999999987765
No 173
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.89 E-value=9.7e-05 Score=78.55 Aligned_cols=54 Identities=13% Similarity=0.054 Sum_probs=46.0
Q ss_pred HHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 013843 366 RVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 366 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
.+.+++|+|..|... +.++|+.++.+|++. +....+|.++.+...+.+..+|.+
T Consensus 149 n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d 202 (906)
T PRK14720 149 NPEIVKKLATSYEEE-DKEKAITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDD 202 (906)
T ss_pred cHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCccc
Confidence 367889999999998 999999999999988 666778888888888888888865
No 174
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.88 E-value=0.00011 Score=59.36 Aligned_cols=66 Identities=20% Similarity=0.129 Sum_probs=60.3
Q ss_pred HHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q 013843 368 SCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN---VKALYRRAQAYMEIADLILAELDIKKAIEADPQ 433 (435)
Q Consensus 368 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~---~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~ 433 (435)
.+++++|.++-.+|+.++|+..|+++++...+. ..++..+|.++..+|++++|+..|++++.-.|+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~ 70 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD 70 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 358899999999999999999999999975444 689999999999999999999999999998887
No 175
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.86 E-value=0.00012 Score=72.65 Aligned_cols=114 Identities=11% Similarity=-0.034 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCC-------C--Ch--HH------HHHHHHHHHHHHhHHHHHHH
Q 013843 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGS-------F--VD--DE------QKLVKSLRVSCWLNSAACCL 378 (435)
Q Consensus 316 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~-------~--~~--~~------~~~~~~~~~~~~~nla~~~~ 378 (435)
+........|..+...|+.++|.....++++..+ ++. . .+ +. +...+.....+++.+|..++
T Consensus 261 ~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~-~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~ 339 (398)
T PRK10747 261 HQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY-DERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLM 339 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 3455666778889999999999999999988433 221 0 00 11 11111222456788888899
Q ss_pred HccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Q 013843 379 KLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEAD 431 (435)
Q Consensus 379 ~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~ 431 (435)
+.++|.+|..+++++++.+|++ ..+..++.++.++|+.++|.++|+++|.+-
T Consensus 340 ~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 340 KHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 9999999999999999998865 445678899999999999999999988764
No 176
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.85 E-value=3.9e-05 Score=46.81 Aligned_cols=33 Identities=30% Similarity=0.521 Sum_probs=30.1
Q ss_pred HHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 013843 368 SCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN 400 (435)
Q Consensus 368 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~ 400 (435)
.+++++|.+|+++|+|++|+.+|+++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 468999999999999999999999999999985
No 177
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.84 E-value=0.0002 Score=71.02 Aligned_cols=59 Identities=15% Similarity=0.061 Sum_probs=42.4
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Q 013843 373 SAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEAD 431 (435)
Q Consensus 373 la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~ 431 (435)
.+..+...|++++|+..++++++.+|+++.++..++.+|...|+|++|++.+.+..+..
T Consensus 159 ~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~ 217 (398)
T PRK10747 159 RVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAH 217 (398)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC
Confidence 36677777777777777777777777777777777777777777777776666665543
No 178
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.84 E-value=7.5e-05 Score=59.76 Aligned_cols=61 Identities=30% Similarity=0.188 Sum_probs=57.2
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC
Q 013843 372 NSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADP 432 (435)
Q Consensus 372 nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P 432 (435)
..|.....-++.+.|++.|.++|.+.|.++.+|.++++++.-.|+.++|++++++|+++..
T Consensus 48 l~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag 108 (175)
T KOG4555|consen 48 LKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAG 108 (175)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcC
Confidence 4567788899999999999999999999999999999999999999999999999999864
No 179
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.84 E-value=0.00011 Score=63.37 Aligned_cols=75 Identities=23% Similarity=0.181 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHh
Q 013843 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD 395 (435)
Q Consensus 316 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 395 (435)
.++..+.++|.++.+.+.++.|+..+.+||++.|... .++..+|.+|.++.+|++|+.+|.++++
T Consensus 132 ~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~---------------kAl~RRAeayek~ek~eealeDyKki~E 196 (271)
T KOG4234|consen 132 ERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYE---------------KALERRAEAYEKMEKYEEALEDYKKILE 196 (271)
T ss_pred HHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhH---------------HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4567788999999999999999999999999988653 5577899999999999999999999999
Q ss_pred hCCCCHHHHH
Q 013843 396 CDCHNVKALY 405 (435)
Q Consensus 396 ~~p~~~~a~~ 405 (435)
.+|.+..|--
T Consensus 197 ~dPs~~ear~ 206 (271)
T KOG4234|consen 197 SDPSRREARE 206 (271)
T ss_pred hCcchHHHHH
Confidence 9999876543
No 180
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.83 E-value=0.00011 Score=68.15 Aligned_cols=68 Identities=13% Similarity=-0.005 Sum_probs=61.6
Q ss_pred HHHhHHHHHH-HHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Q 013843 368 SCWLNSAACC-LKLKDYQGAIELCSKVLDCDCHN---VKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (435)
Q Consensus 368 ~~~~nla~~~-~~~~~~~~A~~~~~~al~~~p~~---~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n~ 435 (435)
...++.|..+ ++.++|++|+..|++.++..|++ +.++|.+|.+|+..|++++|+..|+++++..|+++
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~ 214 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSP 214 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc
Confidence 4467888876 66799999999999999999998 58999999999999999999999999999999763
No 181
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.82 E-value=8.4e-05 Score=74.28 Aligned_cols=101 Identities=13% Similarity=-0.016 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 013843 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDC 398 (435)
Q Consensus 319 ~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p 398 (435)
..++..+...|..++|...+...++.|+-.|...+. +...|..+..+|+-++|..+++.++..|+
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHges---------------lAmkGL~L~~lg~~~ea~~~vr~glr~d~ 72 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGES---------------LAMKGLTLNCLGKKEEAYELVRLGLRNDL 72 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchh---------------HHhccchhhcccchHHHHHHHHHHhccCc
Confidence 456667777788888888888888888877665532 44555566666666666666666666666
Q ss_pred CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 013843 399 HNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 399 ~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
...-+|.-+|..+..-.+|++|+.+|+.||.++|+|
T Consensus 73 ~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN 108 (700)
T KOG1156|consen 73 KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDN 108 (700)
T ss_pred ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCc
Confidence 666666666666666666666666666666666665
No 182
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.81 E-value=7.2e-05 Score=75.75 Aligned_cols=71 Identities=23% Similarity=0.164 Sum_probs=67.4
Q ss_pred HHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Q 013843 365 LRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (435)
Q Consensus 365 ~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n~ 435 (435)
....+++.+|++|..+|++++|+.+.++||+..|..+..|+.+|.+|.+.|++.+|.++++.|-.+|+.||
T Consensus 192 ~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DR 262 (517)
T PF12569_consen 192 TLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADR 262 (517)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999875
No 183
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.81 E-value=0.00015 Score=68.80 Aligned_cols=109 Identities=16% Similarity=0.145 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHH
Q 013843 314 KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKV 393 (435)
Q Consensus 314 ~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 393 (435)
+...-.++-+.||.+.-.|+|+.|+++|+..+.+.-...+. ...+...+.+|..|.-++++++||.+..+-
T Consensus 231 rAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r---------~vEAQscYSLgNtytll~e~~kAI~Yh~rH 301 (639)
T KOG1130|consen 231 RAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNR---------TVEAQSCYSLGNTYTLLKEVQKAITYHQRH 301 (639)
T ss_pred HHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcch---------hHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 33444567788999999999999999999998876443221 223455788999999999999999999998
Q ss_pred HhhCC------CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Q 013843 394 LDCDC------HNVKALYRRAQAYMEIADLILAELDIKKAIEAD 431 (435)
Q Consensus 394 l~~~p------~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~ 431 (435)
|.+.. ....++|.+|.++..+|+.++|+.+.++.+++.
T Consensus 302 LaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s 345 (639)
T KOG1130|consen 302 LAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSS 345 (639)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 77642 346899999999999999999999999888763
No 184
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.81 E-value=0.00055 Score=61.75 Aligned_cols=107 Identities=20% Similarity=0.166 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhh
Q 013843 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC 396 (435)
Q Consensus 317 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 396 (435)
-+..+.+.|...++.|+|.+|+..|+......|..+-. ..+.+.++.++++.++|+.|+...++-+.+
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~------------~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYS------------EQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc------------HHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 36789999999999999999999999999877765432 366889999999999999999999999999
Q ss_pred CCCCH---HHHHHHHHHHHhccc--------HHHHHHHHHHHHHhCCCCC
Q 013843 397 DCHNV---KALYRRAQAYMEIAD--------LILAELDIKKAIEADPQNR 435 (435)
Q Consensus 397 ~p~~~---~a~~~~a~~~~~lg~--------~~eA~~~~~~al~l~P~n~ 435 (435)
.|.++ -++|.+|.+++..=+ ..+|+..|+..+.--|+.+
T Consensus 101 yP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~ 150 (254)
T COG4105 101 YPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSR 150 (254)
T ss_pred CCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCc
Confidence 98875 568888988765432 4678999999999888753
No 185
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.79 E-value=3.9e-05 Score=46.89 Aligned_cols=33 Identities=30% Similarity=0.427 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 013843 402 KALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 402 ~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
++|+.+|.+|..+|++++|+++|+++++++|+|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 567777777777888888888888887777754
No 186
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.00023 Score=65.46 Aligned_cols=87 Identities=18% Similarity=0.117 Sum_probs=76.3
Q ss_pred CHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 013843 333 KYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYM 412 (435)
Q Consensus 333 ~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~ 412 (435)
..+..+...+..|..+|.+.+- |.-+|.+|+.++++..|...|.+|+++.|+|+..+.-+|.+++
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~eg---------------W~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~ 201 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEG---------------WDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALY 201 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchh---------------HHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3555666777888888888644 8899999999999999999999999999999999999999998
Q ss_pred hcc---cHHHHHHHHHHHHHhCCCC
Q 013843 413 EIA---DLILAELDIKKAIEADPQN 434 (435)
Q Consensus 413 ~lg---~~~eA~~~~~~al~l~P~n 434 (435)
... ...+|.+.|++++++||+|
T Consensus 202 ~~a~~~~ta~a~~ll~~al~~D~~~ 226 (287)
T COG4235 202 YQAGQQMTAKARALLRQALALDPAN 226 (287)
T ss_pred HhcCCcccHHHHHHHHHHHhcCCcc
Confidence 664 4678999999999999987
No 187
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.74 E-value=9.1e-05 Score=64.58 Aligned_cols=71 Identities=13% Similarity=-0.024 Sum_probs=67.2
Q ss_pred HHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 013843 364 SLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 364 ~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
+.++.+++.+|..|-.+|-|.-|..++.++|.+.|+-+.++..+|.-+...|+|+.|.+.|+..+++||.+
T Consensus 62 eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y 132 (297)
T COG4785 62 EERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY 132 (297)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc
Confidence 34678899999999999999999999999999999999999999999999999999999999999999975
No 188
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.73 E-value=9e-05 Score=55.97 Aligned_cols=61 Identities=26% Similarity=0.295 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHH
Q 013843 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKV 393 (435)
Q Consensus 317 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 393 (435)
....+...|..+|+.|+|++|+..+++ +...+.. ..+++.+|.|++++++|++|+..+.++
T Consensus 24 ~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~---------------~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 24 NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN---------------PDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH---------------HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC---------------HHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 344667789999999999999999999 6665543 355667799999999999999999875
No 189
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.71 E-value=4.1e-05 Score=70.99 Aligned_cols=63 Identities=27% Similarity=0.266 Sum_probs=59.4
Q ss_pred HhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC
Q 013843 370 WLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADP 432 (435)
Q Consensus 370 ~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P 432 (435)
+-..|.-|+++|+|++|+++|.+++.++|.|+-.+.++|.+|+++..|..|..++..|+.||-
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~ 162 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK 162 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH
Confidence 346789999999999999999999999999999999999999999999999999999999873
No 190
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.67 E-value=0.00083 Score=60.02 Aligned_cols=105 Identities=16% Similarity=0.093 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHcc-----------CHHHH
Q 013843 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK-----------DYQGA 386 (435)
Q Consensus 318 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~-----------~~~~A 386 (435)
.......|..+++.|+|..|+..|++.++..|..+.. ..+++.+|.|++++. ...+|
T Consensus 42 ~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~------------~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A 109 (203)
T PF13525_consen 42 PQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA------------DYALYMLGLSYYKQIPGILRSDRDQTSTRKA 109 (203)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH------------HHHHHHHHHHHHHHHHHHH-TT---HHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch------------hhHHHHHHHHHHHhCccchhcccChHHHHHH
Confidence 3466788999999999999999999999999987642 456777777766543 35689
Q ss_pred HHHHHHHHhhCCCCHHH-----------------HHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 013843 387 IELCSKVLDCDCHNVKA-----------------LYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 387 ~~~~~~al~~~p~~~~a-----------------~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
+..++..+..-|++..+ -+..|.-|+..|.|..|+..++.+++--|+-
T Consensus 110 ~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t 174 (203)
T PF13525_consen 110 IEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDT 174 (203)
T ss_dssp HHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCC
Confidence 99999999999987422 3568999999999999999999999988863
No 191
>PRK15331 chaperone protein SicA; Provisional
Probab=97.67 E-value=0.00034 Score=58.99 Aligned_cols=69 Identities=10% Similarity=-0.164 Sum_probs=64.6
Q ss_pred HHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Q 013843 367 VSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (435)
Q Consensus 367 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n~ 435 (435)
....+..|.-++..|++++|...|+-..-++|.|++.++.+|.|+..+++|++|+..|..|..++++|+
T Consensus 37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp 105 (165)
T PRK15331 37 MDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDY 105 (165)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCC
Confidence 355778888999999999999999999999999999999999999999999999999999999999875
No 192
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.65 E-value=0.00085 Score=57.28 Aligned_cols=102 Identities=16% Similarity=0.174 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhC
Q 013843 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD 397 (435)
Q Consensus 318 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 397 (435)
.+.....|+.+...|+|.+|..+|.+++.-.=.+. ...++-+|...+..+++..|....++..+.+
T Consensus 89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d--------------~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~ 154 (251)
T COG4700 89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHD--------------AAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN 154 (251)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCC--------------HHHHHHHHHHHHhhccHHHHHHHHHHHhhcC
Confidence 34566789999999999999999999997432111 2558899999999999999999999999998
Q ss_pred CC--CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q 013843 398 CH--NVKALYRRAQAYMEIADLILAELDIKKAIEADPQ 433 (435)
Q Consensus 398 p~--~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~ 433 (435)
|. .+......|.+|..+|++.+|...|+.++..-|.
T Consensus 155 pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg 192 (251)
T COG4700 155 PAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG 192 (251)
T ss_pred CccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC
Confidence 85 4677888899999999999999999999988775
No 193
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.00038 Score=66.29 Aligned_cols=116 Identities=17% Similarity=0.214 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChH---------HHHHHHHHHHH----------HHhHHHHHHH
Q 013843 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDD---------EQKLVKSLRVS----------CWLNSAACCL 378 (435)
Q Consensus 318 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~---------~~~~~~~~~~~----------~~~nla~~~~ 378 (435)
..-+-..|..+|..|++.+|+-.|+++..++|.....-+. ..+....+... -++--+...+
T Consensus 232 vhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~ 311 (564)
T KOG1174|consen 232 EHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLY 311 (564)
T ss_pred HHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhh
Confidence 4556778999999999999999999999988865432110 00111111111 1222334466
Q ss_pred HccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q 013843 379 KLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQ 433 (435)
Q Consensus 379 ~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~ 433 (435)
..++|..|+.+..+++..+|.+..+|...|.++..+++.++|.-.|+.|..+.|.
T Consensus 312 ~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~ 366 (564)
T KOG1174|consen 312 DEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPY 366 (564)
T ss_pred hhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchh
Confidence 7889999999999999999999999999999999999999999999999999885
No 194
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.64 E-value=0.00034 Score=64.28 Aligned_cols=68 Identities=22% Similarity=0.146 Sum_probs=62.4
Q ss_pred HHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Q 013843 368 SCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVK---ALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (435)
Q Consensus 368 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~---a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n~ 435 (435)
..++..|.-+++.|+|++|+..|++++...|.... +.+.+|.+|++++++++|+..+++.+++.|+|+
T Consensus 33 ~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~ 103 (243)
T PRK10866 33 SEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP 103 (243)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCC
Confidence 44778999999999999999999999999998864 459999999999999999999999999999875
No 195
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.61 E-value=0.00045 Score=66.39 Aligned_cols=120 Identities=14% Similarity=0.021 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCC-------hHHHHHHHHHH------------HHHHhHHHH
Q 013843 315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFV-------DDEQKLVKSLR------------VSCWLNSAA 375 (435)
Q Consensus 315 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~-------~~~~~~~~~~~------------~~~~~nla~ 375 (435)
+..++.+.+.++.|-...+..+|++.|.++..+.|+++..- +.+-...+... +...--+|.
T Consensus 555 ~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~a 634 (840)
T KOG2003|consen 555 LNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAA 634 (840)
T ss_pred HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHH
Confidence 34566777788888888888888888888888887765310 00000111110 111223566
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 013843 376 CCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 376 ~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
.|+..+=|++|++++++|--+.|+..+-....|.|+.+.|+|.+|.+.|+...+.-|.|
T Consensus 635 yyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfped 693 (840)
T KOG2003|consen 635 YYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPED 693 (840)
T ss_pred HHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccc
Confidence 77777788889999999988899888888888999999999999999998888877765
No 196
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.61 E-value=0.0003 Score=71.36 Aligned_cols=120 Identities=13% Similarity=0.090 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCC-------------CChHHHHHHHHHHHHHHhHHHHHHHHcc
Q 013843 315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGS-------------FVDDEQKLVKSLRVSCWLNSAACCLKLK 381 (435)
Q Consensus 315 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~-------------~~~~~~~~~~~~~~~~~~nla~~~~~~~ 381 (435)
.++...+-.....|...|+..+|...-.+-++ .+.++. ..+..++-.....+.+...+|......+
T Consensus 421 ~Erlemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~ 499 (777)
T KOG1128|consen 421 FERLEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNK 499 (777)
T ss_pred HHhHHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccch
Confidence 34444555556667777777777777776666 222221 1112223333334444555555566679
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Q 013843 382 DYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (435)
Q Consensus 382 ~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n~ 435 (435)
+|.+|..+++..++++|-....||++|.|..++++++.|.++|.+++.++|+|.
T Consensus 500 ~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~ 553 (777)
T KOG1128|consen 500 DFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNA 553 (777)
T ss_pred hHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCch
Confidence 999999999999999999999999999999999999999999999999999873
No 197
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.59 E-value=0.00069 Score=55.82 Aligned_cols=68 Identities=19% Similarity=0.110 Sum_probs=62.9
Q ss_pred HHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Q 013843 368 SCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN---VKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (435)
Q Consensus 368 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~---~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n~ 435 (435)
..+++.|...++.++|.+|++.++.+....|-. ..|.+.++.+|+..++|++|+..+++.++|+|+++
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 448899999999999999999999999988765 58899999999999999999999999999999875
No 198
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.57 E-value=0.00012 Score=47.80 Aligned_cols=35 Identities=26% Similarity=0.300 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Q 013843 401 VKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (435)
Q Consensus 401 ~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n~ 435 (435)
+.+++.+|.+|..+|++++|++.|+++++.+|+|+
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~ 35 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDP 35 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 36789999999999999999999999999999984
No 199
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.57 E-value=0.0009 Score=66.94 Aligned_cols=103 Identities=17% Similarity=0.107 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 013843 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDC 398 (435)
Q Consensus 319 ~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p 398 (435)
..+.+.|..+|+..+|..|++.|...+...+.+... ...+....+++.||+++.+.++|++++.+|-+.+|
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~---------~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~ 425 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYS---------DRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDR 425 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhh---------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcc
Confidence 356788999999999999999999999998876532 22367788999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q 013843 399 HNVKALYRRAQAYMEIADLILAELDIKKAIEA 430 (435)
Q Consensus 399 ~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l 430 (435)
.++-.-+.+-++...-+.-++|+.++.+.+..
T Consensus 426 ~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 426 QSPLCQLLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred ccHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 99999888999999999999999998877654
No 200
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=97.55 E-value=0.00048 Score=68.58 Aligned_cols=77 Identities=16% Similarity=0.243 Sum_probs=60.1
Q ss_pred EEEEEecCCcEEeecCCCCCCCeEEEcCCCCcchHHHHHHcccccCcEEEEEEcCCCCCCccccccccccCCCCCeEEEE
Q 013843 215 SYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYE 294 (435)
Q Consensus 215 ~y~~~~~~g~~f~~~~~~~~~p~~~~lg~~~v~~g~~~~l~~m~~Ge~~~i~~~~~~~yg~~~~~~~~~~ip~~~~l~~~ 294 (435)
+|++.. +|..|+++ ...++.|.+|.+.+++||+.+|.+|++|+...|.++....|+..+ -+|....|.
T Consensus 156 ~~~~~~-dg~~~~~~---~~~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~--------~~gk~~~f~ 223 (408)
T TIGR00115 156 DFEGFI-DGEAFEGG---KAENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEE--------LAGKEATFK 223 (408)
T ss_pred EEEEEE-CCEECcCC---CCCCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCccc--------CCCCeEEEE
Confidence 444433 66666654 357899999999999999999999999999999998655565432 246788999
Q ss_pred EEEEEEEec
Q 013843 295 VEMMDFIKE 303 (435)
Q Consensus 295 iel~~~~~~ 303 (435)
+.+.++.+.
T Consensus 224 v~i~~I~~~ 232 (408)
T TIGR00115 224 VTVKEVKEK 232 (408)
T ss_pred EEEEEeccC
Confidence 999999754
No 201
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.55 E-value=0.00021 Score=73.26 Aligned_cols=114 Identities=32% Similarity=0.431 Sum_probs=102.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHH--ccCHHHHH
Q 013843 310 NNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLK--LKDYQGAI 387 (435)
Q Consensus 310 ~~~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~--~~~~~~A~ 387 (435)
.....+.++...+.+||.+|+.++|..|.-.|..++.+.|.+.. ..+.++.|++.||+. +++|..++
T Consensus 45 di~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~-----------~~a~~~~~~~s~~m~~~l~~~~~~~ 113 (748)
T KOG4151|consen 45 DIEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHH-----------VVATLRSNQASCYMQLGLGEYPKAI 113 (748)
T ss_pred chHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccch-----------hhhhHHHHHHHHHhhcCccchhhhc
Confidence 45677889999999999999999999999999999999986542 245778899999876 56899999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 013843 388 ELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 388 ~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
..|.-|+...|...++++.++.+|..++.++-|.+++.-....+|++
T Consensus 114 ~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~ 160 (748)
T KOG4151|consen 114 PECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSN 160 (748)
T ss_pred CchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 99999999999999999999999999999999999999999999987
No 202
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.48 E-value=0.00033 Score=66.08 Aligned_cols=87 Identities=21% Similarity=0.254 Sum_probs=63.8
Q ss_pred CHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 013843 333 KYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYM 412 (435)
Q Consensus 333 ~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~ 412 (435)
++..|...|++.....+.. ..+++.+|.|++.+|+|++|...+.+|++.+|+++.++.+++.+..
T Consensus 182 ~~~~A~y~f~El~~~~~~t---------------~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~ 246 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGST---------------PKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSL 246 (290)
T ss_dssp CCCHHHHHHHHHHCCS--S---------------HHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCC---------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 4666666666644332211 3557778999999999999999999999999999999999999888
Q ss_pred hcccH-HHHHHHHHHHHHhCCCC
Q 013843 413 EIADL-ILAELDIKKAIEADPQN 434 (435)
Q Consensus 413 ~lg~~-~eA~~~~~~al~l~P~n 434 (435)
.+|+. +.+.+.+.+....+|++
T Consensus 247 ~~gk~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 247 HLGKPTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp HTT-TCHHHHHHHHHCHHHTTTS
T ss_pred HhCCChhHHHHHHHHHHHhCCCC
Confidence 88888 66777777777788875
No 203
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.47 E-value=0.00084 Score=68.63 Aligned_cols=103 Identities=18% Similarity=0.114 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhC
Q 013843 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD 397 (435)
Q Consensus 318 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 397 (435)
...+...+..+.+.++-++|..+..+|-.+.+.. +..|+.+|.++...+++.+|...|..|+.+|
T Consensus 650 ~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~---------------~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld 714 (799)
T KOG4162|consen 650 QKLWLLAADLFLLSGNDDEARSCLLEASKIDPLS---------------ASVYYLRGLLLEVKGQLEEAKEAFLVALALD 714 (799)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhh---------------HHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC
Confidence 3445566777777888888888888888877543 5779999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcccHHHHHH--HHHHHHHhCCCCC
Q 013843 398 CHNVKALYRRAQAYMEIADLILAEL--DIKKAIEADPQNR 435 (435)
Q Consensus 398 p~~~~a~~~~a~~~~~lg~~~eA~~--~~~~al~l~P~n~ 435 (435)
|+++.+...+|.++...|+-.-|.. .+..|+++||.|+
T Consensus 715 P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~ 754 (799)
T KOG4162|consen 715 PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNH 754 (799)
T ss_pred CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCH
Confidence 9999999999999999998877777 9999999999874
No 204
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=9.9e-05 Score=65.25 Aligned_cols=63 Identities=21% Similarity=0.289 Sum_probs=58.8
Q ss_pred hHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q 013843 371 LNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQ 433 (435)
Q Consensus 371 ~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~ 433 (435)
-.-+.+++.-++|..|+.+|.+||.++|..+..|-++|.||+++.+|+.+..+.++|++++||
T Consensus 14 kE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N 76 (284)
T KOG4642|consen 14 KEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPN 76 (284)
T ss_pred HhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChH
Confidence 345677788889999999999999999999999999999999999999999999999999997
No 205
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.44 E-value=0.00024 Score=43.28 Aligned_cols=33 Identities=27% Similarity=0.405 Sum_probs=30.2
Q ss_pred HHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 013843 368 SCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN 400 (435)
Q Consensus 368 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~ 400 (435)
.+|+++|.+|.++|++++|+.+++++++++|+|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 468999999999999999999999999999954
No 206
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.42 E-value=0.001 Score=59.86 Aligned_cols=115 Identities=18% Similarity=0.197 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhccC-CC-----------CChHHH---------HHH-----HHHHHHHHhHH
Q 013843 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSED-GS-----------FVDDEQ---------KLV-----KSLRVSCWLNS 373 (435)
Q Consensus 320 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~-~~-----------~~~~~~---------~~~-----~~~~~~~~~nl 373 (435)
..+...+.+.-.+.|.-.+..|.+.++.+|.. +. +.+.+- +.. ......++.|.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 34455666666677777777777766655321 10 001000 000 11234567889
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 013843 374 AACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 374 a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
+.+|.-.++|..|...+.+.+..||.++.+-.+.|.|++.+|+..+|++.++.+++.+|..
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999953
No 207
>PRK10941 hypothetical protein; Provisional
Probab=97.42 E-value=0.0011 Score=61.42 Aligned_cols=72 Identities=15% Similarity=0.126 Sum_probs=66.9
Q ss_pred HHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Q 013843 364 SLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (435)
Q Consensus 364 ~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n~ 435 (435)
++....+.|+=.+|.+.++|+.|+.+++..+.++|+++.-+.-+|.+|.++|.+..|+.+|+..++..|+++
T Consensus 178 ~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp 249 (269)
T PRK10941 178 EVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDP 249 (269)
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCch
Confidence 445566889999999999999999999999999999999999999999999999999999999999999874
No 208
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.41 E-value=0.00056 Score=68.56 Aligned_cols=91 Identities=18% Similarity=0.144 Sum_probs=50.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH
Q 013843 323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVK 402 (435)
Q Consensus 323 ~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~ 402 (435)
-.|..+-..++|++|+.+|+.||.+.+++. .++..+|....++++|+.....-.+.|++.|.+..
T Consensus 80 v~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~---------------qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra 144 (700)
T KOG1156|consen 80 VLGLLQRSDKKYDEAIKCYRNALKIEKDNL---------------QILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRA 144 (700)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHhcCCCcH---------------HHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHH
Confidence 344444455555555555555555554432 33555555555555555555555555555555555
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHH
Q 013843 403 ALYRRAQAYMEIADLILAELDIKKAI 428 (435)
Q Consensus 403 a~~~~a~~~~~lg~~~eA~~~~~~al 428 (435)
.|+..|.++..+|++..|...++...
T Consensus 145 ~w~~~Avs~~L~g~y~~A~~il~ef~ 170 (700)
T KOG1156|consen 145 SWIGFAVAQHLLGEYKMALEILEEFE 170 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555565555555554443
No 209
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.40 E-value=0.00053 Score=64.08 Aligned_cols=88 Identities=20% Similarity=0.152 Sum_probs=72.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHH
Q 013843 326 NLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALY 405 (435)
Q Consensus 326 ~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 405 (435)
..+....+|..|+.+++-.+....... ..+-.-+|.|++.+|+|++|+..|.-+.+.+..+.+.+.
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE--------------~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~v 95 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEE--------------DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGV 95 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhh--------------HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccch
Confidence 456788999999999887775432211 233456899999999999999999999998877899999
Q ss_pred HHHHHHHhcccHHHHHHHHHHH
Q 013843 406 RRAQAYMEIADLILAELDIKKA 427 (435)
Q Consensus 406 ~~a~~~~~lg~~~eA~~~~~~a 427 (435)
++|.|++.+|.|.+|.+.-.+|
T Consensus 96 nLAcc~FyLg~Y~eA~~~~~ka 117 (557)
T KOG3785|consen 96 NLACCKFYLGQYIEAKSIAEKA 117 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999876655
No 210
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.40 E-value=0.00085 Score=45.41 Aligned_cols=43 Identities=23% Similarity=0.335 Sum_probs=34.8
Q ss_pred HHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 013843 368 SCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQA 410 (435)
Q Consensus 368 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~ 410 (435)
.+++.+|..+.++++|.+|..+++.+|+++|+|..|.-....+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 4578899999999999999999999999999998876554443
No 211
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.38 E-value=0.00093 Score=63.02 Aligned_cols=94 Identities=20% Similarity=0.190 Sum_probs=70.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHH--Hcc--CHHHHHHHHHHHHhhCCC
Q 013843 324 EGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCL--KLK--DYQGAIELCSKVLDCDCH 399 (435)
Q Consensus 324 ~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~--~~~--~~~~A~~~~~~al~~~p~ 399 (435)
.-..+.+.++++.|.+.++.+-+..++ .+..++|.++. ..| ++++|...|+...+..+.
T Consensus 137 ~Vqi~L~~~R~dlA~k~l~~~~~~~eD-----------------~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~ 199 (290)
T PF04733_consen 137 AVQILLKMNRPDLAEKELKNMQQIDED-----------------SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGS 199 (290)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHCCSCC-----------------HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCc-----------------HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCC
Confidence 445677888889988888776654322 23445555433 344 699999999998888888
Q ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 013843 400 NVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 400 ~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
++..+..+|.|++.+|+|++|.+.+++|+..+|+|
T Consensus 200 t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~ 234 (290)
T PF04733_consen 200 TPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPND 234 (290)
T ss_dssp SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999976
No 212
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.37 E-value=0.0014 Score=68.72 Aligned_cols=99 Identities=17% Similarity=0.074 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccC-HHHHHHHHHHHHhhCC
Q 013843 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKD-YQGAIELCSKVLDCDC 398 (435)
Q Consensus 320 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~-~~~A~~~~~~al~~~p 398 (435)
.....|......++|++|++..+++|+.+|++.. ++.-+|.++..++. .++|-++|-.|.+++|
T Consensus 4 ~aLK~Ak~al~nk~YeealEqskkvLk~dpdNYn---------------A~vFLGvAl~sl~q~le~A~ehYv~AaKldp 68 (1238)
T KOG1127|consen 4 TALKSAKDALRNKEYEEALEQSKKVLKEDPDNYN---------------AQVFLGVALWSLGQDLEKAAEHYVLAAKLDP 68 (1238)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHHHHhcCCCcch---------------hhhHHHHHHHhccCCHHHHHHHHHHHHhcCh
Confidence 4455677888999999999999999999998874 48889999999998 9999999999999999
Q ss_pred CCHHHHHHHHHHHHh---cccHHHHHHHHHHHHHhCCC
Q 013843 399 HNVKALYRRAQAYME---IADLILAELDIKKAIEADPQ 433 (435)
Q Consensus 399 ~~~~a~~~~a~~~~~---lg~~~eA~~~~~~al~l~P~ 433 (435)
++.-||-.++..|.. ...++++-..|.+++.+.|+
T Consensus 69 dnlLAWkGL~nLye~~~dIl~ld~~~~~yq~~~l~le~ 106 (1238)
T KOG1127|consen 69 DNLLAWKGLGNLYERYNDILDLDRAAKCYQRAVLILEN 106 (1238)
T ss_pred hhhHHHHHHHHHHHccchhhhhhHhHHHHHHHHHhhhh
Confidence 999999999988876 55688899999998887765
No 213
>PRK01490 tig trigger factor; Provisional
Probab=97.33 E-value=0.0013 Score=66.17 Aligned_cols=77 Identities=13% Similarity=0.273 Sum_probs=58.1
Q ss_pred EEEEEecCCcEEeecCCCCCCCeEEEcCCCCcchHHHHHHcccccCcEEEEEEcCCCCCCccccccccccCCCCCeEEEE
Q 013843 215 SYIARLEDGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTINHEYGFGNVEAKRDLATIPSCAKLYYE 294 (435)
Q Consensus 215 ~y~~~~~~g~~f~~~~~~~~~p~~~~lg~~~v~~g~~~~l~~m~~Ge~~~i~~~~~~~yg~~~~~~~~~~ip~~~~l~~~ 294 (435)
+|.+.+ +|..|+++ ...++.|.+|.+.+++||+.+|.+|+.|+...|.++..-.|+..+ -.|....|.
T Consensus 167 d~~~~~-~g~~~~~~---~~~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~--------lagk~~~f~ 234 (435)
T PRK01490 167 DFVGSI-DGEEFEGG---KAEDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAED--------LAGKEATFK 234 (435)
T ss_pred EEEEEE-CCEECcCC---CCCceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCcccccccc--------CCCCeEEEE
Confidence 444444 56666544 356899999999999999999999999999998886544454322 146788999
Q ss_pred EEEEEEEec
Q 013843 295 VEMMDFIKE 303 (435)
Q Consensus 295 iel~~~~~~ 303 (435)
+.+..+...
T Consensus 235 v~v~~V~~~ 243 (435)
T PRK01490 235 VTVKEVKEK 243 (435)
T ss_pred EEEEEeccC
Confidence 999998854
No 214
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.33 E-value=0.00067 Score=62.01 Aligned_cols=93 Identities=22% Similarity=0.260 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhh
Q 013843 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC 396 (435)
Q Consensus 317 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 396 (435)
.+....+.|..+|+.|+|+.|++.|+.|++.....+ .+-+|+|.|+++.++|..|+++..+.++.
T Consensus 143 ~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp---------------llAYniALaHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 143 EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP---------------LLAYNLALAHYSSRQYASALKHISEIIER 207 (459)
T ss_pred ccchhccchheeeccccHHHHHHHHHHHHhhcCCCc---------------hhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 456778889999999999999999999999876654 44789999999999999999999998875
Q ss_pred ----CCCC-------------------------HHHHHHHHHHHHhcccHHHHHHHH
Q 013843 397 ----DCHN-------------------------VKALYRRAQAYMEIADLILAELDI 424 (435)
Q Consensus 397 ----~p~~-------------------------~~a~~~~a~~~~~lg~~~eA~~~~ 424 (435)
.|.. ..|+...+.++++.++++.|.+.+
T Consensus 208 G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaL 264 (459)
T KOG4340|consen 208 GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEAL 264 (459)
T ss_pred hhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHh
Confidence 2321 367788899999999999998775
No 215
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.30 E-value=0.00037 Score=69.00 Aligned_cols=97 Identities=13% Similarity=0.064 Sum_probs=85.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHH
Q 013843 325 GNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKAL 404 (435)
Q Consensus 325 g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 404 (435)
|..+-..|+-..|+.++..|+...|.... ..+.|+|.+.++-+-...|-..+.++|.++...+-.+
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p~~~~--------------v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~ 679 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAPLQQD--------------VPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTF 679 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccChhhhc--------------ccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHH
Confidence 44445678999999999999988775432 2278999999999999999999999999998889999
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Q 013843 405 YRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (435)
Q Consensus 405 ~~~a~~~~~lg~~~eA~~~~~~al~l~P~n~ 435 (435)
|-+|.+++.+.+.+.|++.|+.|++++|+|+
T Consensus 680 ~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~ 710 (886)
T KOG4507|consen 680 LSLGNAYLALKNISGALEAFRQALKLTTKCP 710 (886)
T ss_pred HhcchhHHHHhhhHHHHHHHHHHHhcCCCCh
Confidence 9999999999999999999999999999874
No 216
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.27 E-value=0.0026 Score=62.20 Aligned_cols=87 Identities=22% Similarity=0.177 Sum_probs=77.8
Q ss_pred HcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 013843 330 KNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQ 409 (435)
Q Consensus 330 ~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~ 409 (435)
..++|+.|+..|++..+..|. +..-+|.+++.+++-.+|+....++|+.+|.+...+...|.
T Consensus 181 ~t~~~~~ai~lle~L~~~~pe------------------v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~ 242 (395)
T PF09295_consen 181 LTQRYDEAIELLEKLRERDPE------------------VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAE 242 (395)
T ss_pred hcccHHHHHHHHHHHHhcCCc------------------HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 456899999999997776543 24458899999999999999999999999999999999999
Q ss_pred HHHhcccHHHHHHHHHHHHHhCCCC
Q 013843 410 AYMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 410 ~~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
.++..++++.|+...++|.++.|++
T Consensus 243 fLl~k~~~~lAL~iAk~av~lsP~~ 267 (395)
T PF09295_consen 243 FLLSKKKYELALEIAKKAVELSPSE 267 (395)
T ss_pred HHHhcCCHHHHHHHHHHHHHhCchh
Confidence 9999999999999999999999975
No 217
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.21 E-value=0.0049 Score=53.22 Aligned_cols=101 Identities=17% Similarity=0.146 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 013843 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCH 399 (435)
Q Consensus 320 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~ 399 (435)
.....|..++..+++++|+..++.++..-. + ..+...+-.++|.+.+.++++++|+...+..-.-.=
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~-D-----------e~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w- 157 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQTK-D-----------ENLKALAALRLARVQLQQKKADAALKTLDTIKEESW- 157 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccch-h-----------HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-
Confidence 445677889999999999999999986532 2 134556678899999999999999987665433221
Q ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q 013843 400 NVKALYRRAQAYMEIADLILAELDIKKAIEADPQ 433 (435)
Q Consensus 400 ~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~ 433 (435)
.+...-.+|.++...|+-++|+..|+++++.+++
T Consensus 158 ~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 158 AAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 1233567899999999999999999999998754
No 218
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.20 E-value=0.0008 Score=45.54 Aligned_cols=34 Identities=24% Similarity=0.302 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Q 013843 402 KALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (435)
Q Consensus 402 ~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n~ 435 (435)
..+|.+|.+++++|+|++|+++++.+|+++|+|+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~ 35 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNR 35 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-H
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcH
Confidence 4689999999999999999999999999999984
No 219
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.19 E-value=0.0025 Score=64.19 Aligned_cols=92 Identities=14% Similarity=0.026 Sum_probs=60.2
Q ss_pred HHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 013843 328 LFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRR 407 (435)
Q Consensus 328 ~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~ 407 (435)
.--.++.++|+++++++|+..|... .+|+.+|+++..+++.+.|...|...++..|...-.|..+
T Consensus 661 er~ld~~eeA~rllEe~lk~fp~f~---------------Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllL 725 (913)
T KOG0495|consen 661 ERYLDNVEEALRLLEEALKSFPDFH---------------KLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLL 725 (913)
T ss_pred HHHhhhHHHHHHHHHHHHHhCCchH---------------HHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHH
Confidence 3344566666666666666665432 4566667777777777777777777777777666666666
Q ss_pred HHHHHhcccHHHHHHHHHHHHHhCCCC
Q 013843 408 AQAYMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 408 a~~~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
+..-...|+.-.|+..|.++..-+|.|
T Consensus 726 akleEk~~~~~rAR~ildrarlkNPk~ 752 (913)
T KOG0495|consen 726 AKLEEKDGQLVRARSILDRARLKNPKN 752 (913)
T ss_pred HHHHHHhcchhhHHHHHHHHHhcCCCc
Confidence 666666666666666666666666655
No 220
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.18 E-value=0.0031 Score=59.31 Aligned_cols=118 Identities=16% Similarity=0.182 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCC----------C-Ch--HH---------------HHHHHHHHH
Q 013843 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGS----------F-VD--DE---------------QKLVKSLRV 367 (435)
Q Consensus 316 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~----------~-~~--~~---------------~~~~~~~~~ 367 (435)
.++....+.|..++...++++|+..+.+.|....+... . .+ +. ..+-.....
T Consensus 4 ~q~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ 83 (518)
T KOG1941|consen 4 DQTKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLL 83 (518)
T ss_pred chhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667788899999999999999999888875543211 0 00 00 122334556
Q ss_pred HHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q 013843 368 SCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN-----VKALYRRAQAYMEIADLILAELDIKKAIEADPQ 433 (435)
Q Consensus 368 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~-----~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~ 433 (435)
.++.|++..+.++.+|.+++.++.-.+.+-... ..++..+|.++..++.|++|++.|++|+++.-+
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~ 154 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHN 154 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhc
Confidence 789999999999999999999999999875433 367888999999999999999999999988654
No 221
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.17 E-value=0.002 Score=58.74 Aligned_cols=66 Identities=17% Similarity=0.131 Sum_probs=61.9
Q ss_pred HhHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Q 013843 370 WLNSAACCLKLKDYQGAIELCSKVLDCDCHN---VKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (435)
Q Consensus 370 ~~nla~~~~~~~~~~~A~~~~~~al~~~p~~---~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n~ 435 (435)
+++.|.-+++.|+|..|...|..-++.-|+. +.|+|++|.+++.+|+|++|...|..+.+-.|.++
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~ 212 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSP 212 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCC
Confidence 7899999999999999999999999999886 58999999999999999999999999999888764
No 222
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.16 E-value=0.0011 Score=69.56 Aligned_cols=94 Identities=13% Similarity=0.062 Sum_probs=75.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 013843 321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN 400 (435)
Q Consensus 321 ~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~ 400 (435)
+..+|-.+...+++..|+..|+.|++.+|.+. .++.-+|.+|...|.|..|++.+++|..++|.+
T Consensus 565 W~~rG~yyLea~n~h~aV~~fQsALR~dPkD~---------------n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s 629 (1238)
T KOG1127|consen 565 WVQRGPYYLEAHNLHGAVCEFQSALRTDPKDY---------------NLWLGLGEAYPESGRYSHALKVFTKASLLRPLS 629 (1238)
T ss_pred hhhccccccCccchhhHHHHHHHHhcCCchhH---------------HHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh
Confidence 44467777788888888888888888888765 457788888888888888888888888888888
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 013843 401 VKALYRRAQAYMEIADLILAELDIKKAIE 429 (435)
Q Consensus 401 ~~a~~~~a~~~~~lg~~~eA~~~~~~al~ 429 (435)
.-+-|..|.....+|+|.+|++.+...+.
T Consensus 630 ~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 630 KYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 88888888888888888888888777654
No 223
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.14 E-value=0.001 Score=39.96 Aligned_cols=31 Identities=32% Similarity=0.428 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q 013843 403 ALYRRAQAYMEIADLILAELDIKKAIEADPQ 433 (435)
Q Consensus 403 a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~ 433 (435)
|+|++|.++..+|++++|++.|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 5677777777777777777777777776665
No 224
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.0026 Score=60.79 Aligned_cols=99 Identities=13% Similarity=0.039 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 013843 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCH 399 (435)
Q Consensus 320 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~ 399 (435)
.+.-.|+.+...++.++|+-.|+.|..+.|.. ..+|--+-.||+..+++.+|....+.++..-|.
T Consensus 336 alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~r---------------L~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~ 400 (564)
T KOG1174|consen 336 ALILKGRLLIALERHTQAVIAFRTAQMLAPYR---------------LEIYRGLFHSYLAQKRFKEANALANWTIRLFQN 400 (564)
T ss_pred HHHhccHHHHhccchHHHHHHHHHHHhcchhh---------------HHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhc
Confidence 34444555555555555555555555554432 234555555666666666666666666666666
Q ss_pred CHHHHHHHH-HHHHh-cccHHHHHHHHHHHHHhCCC
Q 013843 400 NVKALYRRA-QAYME-IADLILAELDIKKAIEADPQ 433 (435)
Q Consensus 400 ~~~a~~~~a-~~~~~-lg~~~eA~~~~~~al~l~P~ 433 (435)
+++++-..| .+++. ----++|...++++|+++|.
T Consensus 401 sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~ 436 (564)
T KOG1174|consen 401 SARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI 436 (564)
T ss_pred chhhhhhhcceeeccCchhHHHHHHHHHhhhccCCc
Confidence 666665554 33322 22335566666666666664
No 225
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.11 E-value=0.0036 Score=63.10 Aligned_cols=116 Identities=16% Similarity=0.130 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCC---------CChHHHHHHHHHHHHH---------HhHHHHHHHHc
Q 013843 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGS---------FVDDEQKLVKSLRVSC---------WLNSAACCLKL 380 (435)
Q Consensus 319 ~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~---------~~~~~~~~~~~~~~~~---------~~nla~~~~~~ 380 (435)
..+.-.+..++..|+...|...+.+|++..|+..+ +...+.+..+.+...+ |+.-+.....+
T Consensus 585 ~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~l 664 (913)
T KOG0495|consen 585 ILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYL 664 (913)
T ss_pred hHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHh
Confidence 34555677788889999999999999998887432 2233445555555443 45555556668
Q ss_pred cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 013843 381 KDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 381 ~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
++.++|+..|+++|+.-|+..|.|..+|+++..+++.+.|++.|...++.-|+.
T Consensus 665 d~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ 718 (913)
T KOG0495|consen 665 DNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNS 718 (913)
T ss_pred hhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCC
Confidence 999999999999999999999999999999999999999999999999998864
No 226
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.0025 Score=59.22 Aligned_cols=68 Identities=22% Similarity=0.268 Sum_probs=59.9
Q ss_pred HHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 013843 367 VSCWLNSAACCLKLKDYQGAIELCSKVLDCDCH----NVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 367 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~----~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
+.-|-.-|.-|++.++|..|+..|.+.|+.... |+-.|.+||.|.+.+|+|..|+.++.+|+.++|.+
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h 152 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTH 152 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcch
Confidence 444667788999999999999999999987544 35669999999999999999999999999999976
No 227
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.05 E-value=0.0011 Score=38.96 Aligned_cols=32 Identities=38% Similarity=0.507 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q 013843 402 KALYRRAQAYMEIADLILAELDIKKAIEADPQ 433 (435)
Q Consensus 402 ~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~ 433 (435)
.+++++|.++..++++++|..+|+++++++|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 35666666666666666666666666666664
No 228
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.03 E-value=0.0022 Score=60.26 Aligned_cols=103 Identities=18% Similarity=0.156 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 013843 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCH 399 (435)
Q Consensus 320 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~ 399 (435)
.+...|+++...+.|+++++.|++|+++..+..+. -+...++..++..|-.++++++|+-+..+|+++-.+
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~---------~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s 194 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDA---------MLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNS 194 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCc---------eeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHh
Confidence 44447889999999999999999999987654332 122356889999999999999999999999987432
Q ss_pred C----------HHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Q 013843 400 N----------VKALYRRAQAYMEIADLILAELDIKKAIEAD 431 (435)
Q Consensus 400 ~----------~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~ 431 (435)
. .-++|+++.++..+|+.-.|.++.+.|.++.
T Consensus 195 ~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla 236 (518)
T KOG1941|consen 195 YGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA 236 (518)
T ss_pred cCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 1 3568999999999999999999999998763
No 229
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.03 E-value=0.00054 Score=41.85 Aligned_cols=34 Identities=29% Similarity=0.385 Sum_probs=30.0
Q ss_pred HHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHH
Q 013843 340 KYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIE 388 (435)
Q Consensus 340 ~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~ 388 (435)
+|++||++.|++. .+|+|+|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~---------------~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNA---------------EAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCH---------------HHHHHHHHHHHHCcCHHhhcC
Confidence 4899999999875 669999999999999999863
No 230
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.00 E-value=0.00092 Score=41.40 Aligned_cols=26 Identities=27% Similarity=0.271 Sum_probs=14.2
Q ss_pred HhHHHHHHHHccCHHHHHHHHHHHHh
Q 013843 370 WLNSAACCLKLKDYQGAIELCSKVLD 395 (435)
Q Consensus 370 ~~nla~~~~~~~~~~~A~~~~~~al~ 395 (435)
|.++|.+|.++|+|++|+.+|+++|.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555556666666666666655443
No 231
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.0046 Score=61.44 Aligned_cols=69 Identities=19% Similarity=0.282 Sum_probs=51.2
Q ss_pred CCcEEeecCCCCCCCeEEEcCCCCcchHHHHHHcccccCcEEEEEE--cCCCCCCccccccccccCCCCCeEEEEEEEEE
Q 013843 222 DGTVFEKKGYDGEQPLEFITDEEQVIAGLDRVAATMKKEEWAIVTI--NHEYGFGNVEAKRDLATIPSCAKLYYEVEMMD 299 (435)
Q Consensus 222 ~g~~f~~~~~~~~~p~~~~lg~~~v~~g~~~~l~~m~~Ge~~~i~~--~~~~~yg~~~~~~~~~~ip~~~~l~~~iel~~ 299 (435)
||..|... ..+.+.|.||.+++||||+.+|.+|+.||...|.+ |.+|.-+ .. .|....|.|.|..
T Consensus 173 Dg~~fegg---~ae~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~--~L--------aGK~a~F~V~vke 239 (441)
T COG0544 173 DGEEFEGG---KAENFSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDYHAE--EL--------AGKEATFKVKVKE 239 (441)
T ss_pred cCeeccCc---cccCeEEEEcCCCchhhHHhhhccCcCCCeeEEEEEcccccchh--Hh--------CCCceEEEEEEEE
Confidence 45555443 45679999999999999999999999999988544 5554322 21 3557789999988
Q ss_pred EEec
Q 013843 300 FIKE 303 (435)
Q Consensus 300 ~~~~ 303 (435)
+...
T Consensus 240 Vk~~ 243 (441)
T COG0544 240 VKKR 243 (441)
T ss_pred Eeec
Confidence 8753
No 232
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.92 E-value=0.0016 Score=40.29 Aligned_cols=28 Identities=21% Similarity=0.129 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHh
Q 013843 403 ALYRRAQAYMEIADLILAELDIKKAIEA 430 (435)
Q Consensus 403 a~~~~a~~~~~lg~~~eA~~~~~~al~l 430 (435)
+|.++|.+|..+|+|++|+++|+++|.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5889999999999999999999996644
No 233
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=96.89 E-value=0.0065 Score=61.76 Aligned_cols=95 Identities=15% Similarity=0.017 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 013843 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCH 399 (435)
Q Consensus 320 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~ 399 (435)
.+.=.|..+-..|+|++|+...++||+..|... .+|+..|.++.+.|++.+|...++.|-.+|+.
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~---------------ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~ 260 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLV---------------ELYMTKARILKHAGDLKEAAEAMDEARELDLA 260 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcH---------------HHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh
Confidence 456677788889999999999999999988754 66999999999999999999999999999998
Q ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 013843 400 NVKALYRRAQAYMEIADLILAELDIKKAIE 429 (435)
Q Consensus 400 ~~~a~~~~a~~~~~lg~~~eA~~~~~~al~ 429 (435)
+--.-...+..+++.|+.++|.+.+....+
T Consensus 261 DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr 290 (517)
T PF12569_consen 261 DRYINSKCAKYLLRAGRIEEAEKTASLFTR 290 (517)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHhhcC
Confidence 888888889999999999999998876544
No 234
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.88 E-value=0.0029 Score=59.29 Aligned_cols=53 Identities=23% Similarity=0.257 Sum_probs=35.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHH
Q 013843 324 EGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCS 391 (435)
Q Consensus 324 ~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~ 391 (435)
.|-.+|..|+|++|+..|.-+......+. .+..|+|.|++-+|.|.+|.....
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~---------------el~vnLAcc~FyLg~Y~eA~~~~~ 115 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKDDAPA---------------ELGVNLACCKFYLGQYIEAKSIAE 115 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccCCCCc---------------ccchhHHHHHHHHHHHHHHHHHHh
Confidence 57889999999999999998877433222 335566666666666655554433
No 235
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.87 E-value=0.013 Score=58.60 Aligned_cols=110 Identities=25% Similarity=0.180 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCC---------Ch----HHHHHHHHH-----HHHHHhHHHHHHHHc
Q 013843 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSF---------VD----DEQKLVKSL-----RVSCWLNSAACCLKL 380 (435)
Q Consensus 319 ~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~---------~~----~~~~~~~~~-----~~~~~~nla~~~~~~ 380 (435)
..+...-|.+.+.++|++|.....+.|...|++... .. +..+-+... .....+..|.|++++
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHc
Confidence 456666678888899999999999988887664321 01 111111111 111126889999999
Q ss_pred cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Q 013843 381 KDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEAD 431 (435)
Q Consensus 381 ~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~ 431 (435)
++.++|+.+++ .+++...+.+..+|+.++++++|++|++.|+..++-+
T Consensus 93 nk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~ 140 (652)
T KOG2376|consen 93 NKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNN 140 (652)
T ss_pred ccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 99999999988 6677778899999999999999999999999887654
No 236
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.86 E-value=0.0082 Score=54.31 Aligned_cols=69 Identities=22% Similarity=0.155 Sum_probs=63.9
Q ss_pred HHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Q 013843 367 VSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN---VKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (435)
Q Consensus 367 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~---~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n~ 435 (435)
+..+++-|...+..|+|.+|+..++.+....|-. .++...++.++++.+++++|+..+++-+.+.|+++
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~ 105 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHP 105 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Confidence 4568999999999999999999999999988765 58999999999999999999999999999999875
No 237
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.86 E-value=0.018 Score=51.11 Aligned_cols=100 Identities=18% Similarity=0.145 Sum_probs=73.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHH-ccCHHHHHHHHHHHHhhCCC-----
Q 013843 326 NLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLK-LKDYQGAIELCSKVLDCDCH----- 399 (435)
Q Consensus 326 ~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-~~~~~~A~~~~~~al~~~p~----- 399 (435)
...|+..+..+|++.+++++++...-..+ .+.+.-+..+|..|.. +.++++|+.+|++|-+.-..
T Consensus 81 ~~cykk~~~~eAv~cL~~aieIyt~~Grf---------~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~s 151 (288)
T KOG1586|consen 81 ANCYKKVDPEEAVNCLEKAIEIYTDMGRF---------TMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVS 151 (288)
T ss_pred HHHhhccChHHHHHHHHHHHHHHHhhhHH---------HHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhh
Confidence 33456668888888888888877654333 2233446677777775 48999999999999876332
Q ss_pred -CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 013843 400 -NVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 400 -~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
--+++...|..-..+++|.+|++.|++.....-+|
T Consensus 152 sANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 152 SANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 24778888888889999999999999987655444
No 238
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.83 E-value=0.0059 Score=62.36 Aligned_cols=68 Identities=15% Similarity=-0.032 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 013843 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCH 399 (435)
Q Consensus 320 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~ 399 (435)
.+...|..+...|++++|...|++|+++.|. ..+|..+|.++...|++++|+..|.+|+.++|.
T Consensus 422 ~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps----------------~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 422 IYEILAVQALVKGKTDEAYQAINKAIDLEMS----------------WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 3555677778899999999999999999873 256999999999999999999999999999999
Q ss_pred CHHH
Q 013843 400 NVKA 403 (435)
Q Consensus 400 ~~~a 403 (435)
++..
T Consensus 486 ~pt~ 489 (517)
T PRK10153 486 ENTL 489 (517)
T ss_pred CchH
Confidence 8853
No 239
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.81 E-value=0.021 Score=50.80 Aligned_cols=107 Identities=22% Similarity=0.293 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhC
Q 013843 319 GRKKEEGNLLFKN-GKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD 397 (435)
Q Consensus 319 ~~~~~~g~~~~~~-g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 397 (435)
.-+...|..|-.. .++++||.+|++|-+....+. .....-.+++..|..-..+++|.+|+..|+++....
T Consensus 114 k~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ee---------s~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s 184 (288)
T KOG1586|consen 114 KHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEE---------SVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSS 184 (288)
T ss_pred hhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchh---------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344556666555 689999999999988775432 223344667777888888999999999999988765
Q ss_pred CCC------HHH-HHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 013843 398 CHN------VKA-LYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 398 p~~------~~a-~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
-+| +|- ++..|.||+-..+.-.|...+++-.+++|+.
T Consensus 185 ~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F 228 (288)
T KOG1586|consen 185 LDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAF 228 (288)
T ss_pred ccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcc
Confidence 544 344 4556788888788888999999999999964
No 240
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.79 E-value=0.0042 Score=57.16 Aligned_cols=84 Identities=19% Similarity=0.121 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHH
Q 013843 313 GKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSK 392 (435)
Q Consensus 313 ~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 392 (435)
.+...+....+.|....+.|+.++|..+|+.|+.+.|..+ .++...|.....-++.-+|-.+|-+
T Consensus 111 a~~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p---------------~~L~e~G~f~E~~~~iv~ADq~Y~~ 175 (472)
T KOG3824|consen 111 AKVKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNP---------------QILIEMGQFREMHNEIVEADQCYVK 175 (472)
T ss_pred hhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCH---------------HHHHHHhHHHHhhhhhHhhhhhhhe
Confidence 4556667777778888999999999999999999999875 5588889888888999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHH
Q 013843 393 VLDCDCHNVKALYRRAQAY 411 (435)
Q Consensus 393 al~~~p~~~~a~~~~a~~~ 411 (435)
||.++|.|.+|+.+++...
T Consensus 176 ALtisP~nseALvnR~RT~ 194 (472)
T KOG3824|consen 176 ALTISPGNSEALVNRARTT 194 (472)
T ss_pred eeeeCCCchHHHhhhhccc
Confidence 9999999999999987654
No 241
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=96.79 E-value=0.0011 Score=64.56 Aligned_cols=65 Identities=32% Similarity=0.278 Sum_probs=60.9
Q ss_pred HhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 013843 370 WLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 370 ~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
+-+-|.-.++-+.|+.|+..|.+||+++|+++..+-+|+.++...++|..|+.++.+|++++|..
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~ 71 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTY 71 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchh
Confidence 44677888999999999999999999999999999999999999999999999999999999963
No 242
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.78 E-value=0.0096 Score=60.22 Aligned_cols=99 Identities=24% Similarity=0.230 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 013843 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCH 399 (435)
Q Consensus 320 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~ 399 (435)
-+...|..+..+|+.++|++.|++++.... ...++...+++.+|.|++-+.+|++|..++.+.++.+ +
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~-----------~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~ 336 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQS-----------EWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-K 336 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchh-----------hHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-c
Confidence 355678888999999999999999984321 2345566779999999999999999999999999865 3
Q ss_pred CHHH--HHHHHHHHHhcccH-------HHHHHHHHHHHHh
Q 013843 400 NVKA--LYRRAQAYMEIADL-------ILAELDIKKAIEA 430 (435)
Q Consensus 400 ~~~a--~~~~a~~~~~lg~~-------~eA~~~~~~al~l 430 (435)
..++ .|..|.|+..+++. ++|.+.|.++-.+
T Consensus 337 WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 337 WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 4555 46679999999999 8888888877654
No 243
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.77 E-value=0.0025 Score=38.22 Aligned_cols=32 Identities=28% Similarity=0.417 Sum_probs=29.9
Q ss_pred HHhHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 013843 369 CWLNSAACCLKLKDYQGAIELCSKVLDCDCHN 400 (435)
Q Consensus 369 ~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~ 400 (435)
+++++|.||.++|++++|+..++++++..|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 57899999999999999999999999999974
No 244
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.74 E-value=0.0022 Score=56.58 Aligned_cols=59 Identities=17% Similarity=0.210 Sum_probs=55.8
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 013843 376 CCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 376 ~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
...+.++.+.|.+.|.++|++.|.....|||+|....+.|+++.|.+.|++.|++||.+
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 44567899999999999999999999999999999999999999999999999999986
No 245
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.72 E-value=0.024 Score=50.89 Aligned_cols=97 Identities=16% Similarity=0.116 Sum_probs=72.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccC-------HHHHHHHHHHHHhhCCC
Q 013843 327 LLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKD-------YQGAIELCSKVLDCDCH 399 (435)
Q Consensus 327 ~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~-------~~~A~~~~~~al~~~p~ 399 (435)
.+-....++.|+..|.-||-........ ....+.+++.+|-+|..+++ +.+|++.|.+|++....
T Consensus 86 ~~~~~Rt~~~ai~~YkLAll~~~~~~~~--------~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~ 157 (214)
T PF09986_consen 86 DFSGERTLEEAIESYKLALLCAQIKKEK--------PSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDF 157 (214)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhCCC--------HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 5556678999999999998764322211 12456778899999999888 44566666666654422
Q ss_pred ------CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Q 013843 400 ------NVKALYRRAQAYMEIADLILAELDIKKAIEAD 431 (435)
Q Consensus 400 ------~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~ 431 (435)
....+|.+|..+.++|++++|+.+|.+++..-
T Consensus 158 ~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 158 PIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred CCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 25789999999999999999999999998653
No 246
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.72 E-value=0.034 Score=48.75 Aligned_cols=94 Identities=29% Similarity=0.329 Sum_probs=45.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCC-CHHHHH
Q 013843 327 LLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCH-NVKALY 405 (435)
Q Consensus 327 ~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~ 405 (435)
.++..++++.|+..|.+++...+.... ....+..++..+...+++..|+..+.+++...+. ...++.
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 206 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNE------------LAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALL 206 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccc------------hHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHH
Confidence 566666666666666666654332000 0122233333344444555555555555555544 344555
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHhCC
Q 013843 406 RRAQAYMEIADLILAELDIKKAIEADP 432 (435)
Q Consensus 406 ~~a~~~~~lg~~~eA~~~~~~al~l~P 432 (435)
.++.++...+++++|+..+.+++...|
T Consensus 207 ~~~~~~~~~~~~~~a~~~~~~~~~~~~ 233 (291)
T COG0457 207 NLGLLYLKLGKYEEALEYYEKALELDP 233 (291)
T ss_pred HhhHHHHHcccHHHHHHHHHHHHhhCc
Confidence 555555555555555555555544444
No 247
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.62 E-value=0.0069 Score=55.79 Aligned_cols=67 Identities=21% Similarity=0.120 Sum_probs=61.7
Q ss_pred HHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 013843 368 SCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 368 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
.+-++.|.-..+.|+.++|...+.-||.++|.++.++..+|+....-++.-+|-.+|-+||.++|.|
T Consensus 117 ~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~n 183 (472)
T KOG3824|consen 117 ILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGN 183 (472)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCc
Confidence 3345677777889999999999999999999999999999999999999999999999999999987
No 248
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=96.57 E-value=0.015 Score=49.82 Aligned_cols=57 Identities=19% Similarity=0.109 Sum_probs=43.9
Q ss_pred CCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccC-----------HHHHHHHHHHHHhhCCCC
Q 013843 332 GKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKD-----------YQGAIELCSKVLDCDCHN 400 (435)
Q Consensus 332 g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~-----------~~~A~~~~~~al~~~p~~ 400 (435)
.-+++|+..|++||.++|.. ..++.++|.+|..++. |++|..+|.+|...+|+|
T Consensus 49 ~miedAisK~eeAL~I~P~~---------------hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~n 113 (186)
T PF06552_consen 49 KMIEDAISKFEEALKINPNK---------------HDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNN 113 (186)
T ss_dssp HHHHHHHHHHHHHHHH-TT----------------HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHHHHHHhcCCch---------------HHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 46788999999999999875 3668889888877553 899999999999999988
Q ss_pred HHH
Q 013843 401 VKA 403 (435)
Q Consensus 401 ~~a 403 (435)
.-.
T Consensus 114 e~Y 116 (186)
T PF06552_consen 114 ELY 116 (186)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 249
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.57 E-value=0.0043 Score=36.19 Aligned_cols=33 Identities=36% Similarity=0.488 Sum_probs=29.9
Q ss_pred HHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 013843 368 SCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN 400 (435)
Q Consensus 368 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~ 400 (435)
.+++++|.++..++++++|+.++.++++++|++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 358899999999999999999999999998863
No 250
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=96.56 E-value=0.012 Score=47.64 Aligned_cols=69 Identities=19% Similarity=0.230 Sum_probs=55.1
Q ss_pred HHHHhHHHHHHHHcc---CHHHHHHHHHHHHh-hCCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Q 013843 367 VSCWLNSAACCLKLK---DYQGAIELCSKVLD-CDCH-NVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (435)
Q Consensus 367 ~~~~~nla~~~~~~~---~~~~A~~~~~~al~-~~p~-~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n~ 435 (435)
..+.+|+|.|+.+.. +.++.+..++..++ -.|. ....+|.+|..++++++|++|+.+++..|+.+|+|+
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR 105 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence 355788888887755 46778888888886 4443 357788899999999999999999999999999884
No 251
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.54 E-value=0.02 Score=51.84 Aligned_cols=65 Identities=15% Similarity=0.121 Sum_probs=47.7
Q ss_pred HhHHHHHHHH----ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 013843 370 WLNSAACCLK----LKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 370 ~~nla~~~~~----~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
+..+|.++.+ -.+++.|.-.|+..-+.-|..+..+..+|.|++.+++|++|...++.||.-++++
T Consensus 172 LtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~d 240 (299)
T KOG3081|consen 172 LTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKD 240 (299)
T ss_pred HHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCC
Confidence 3335555544 2347778888888777666778888888888888888888888888888877765
No 252
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.52 E-value=0.021 Score=54.54 Aligned_cols=114 Identities=13% Similarity=-0.042 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccC---------CCCCh-------HHHHHHHHHHHHHHhHHHHHHHH
Q 013843 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSED---------GSFVD-------DEQKLVKSLRVSCWLNSAACCLK 379 (435)
Q Consensus 316 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~---------~~~~~-------~~~~~~~~~~~~~~~nla~~~~~ 379 (435)
.........+..+...|+++.|.+...++|+..-+. ...+. +.+-........+++.+|..+++
T Consensus 261 ~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k 340 (400)
T COG3071 261 NDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALK 340 (400)
T ss_pred cChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Confidence 334555566778889999999999999888743110 00000 22222333344678899999999
Q ss_pred ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q 013843 380 LKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEA 430 (435)
Q Consensus 380 ~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l 430 (435)
.+.|.+|-.+++.|+...| ....+..+|.++.++|+..+|.+.++.+|.+
T Consensus 341 ~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 341 NKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred hhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9999999999999999987 5677888999999999999999999999865
No 253
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.49 E-value=0.043 Score=48.05 Aligned_cols=101 Identities=27% Similarity=0.206 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHH-HHHHccCHHHHHHHHHHHHhh
Q 013843 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAA-CCLKLKDYQGAIELCSKVLDC 396 (435)
Q Consensus 318 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~-~~~~~~~~~~A~~~~~~al~~ 396 (435)
...+...+..+...+++..|+..+.+++...+... ......+. ++...++++.|+..+.+++..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 159 (291)
T COG0457 95 AEALLNLGLLLEALGKYEEALELLEKALALDPDPD---------------LAEALLALGALYELGDYEEALELYEKALEL 159 (291)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc---------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34555666667777777777777777777655431 11223333 788888888888888888887
Q ss_pred CC---CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q 013843 397 DC---HNVKALYRRAQAYMEIADLILAELDIKKAIEADPQ 433 (435)
Q Consensus 397 ~p---~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~ 433 (435)
+| .....++.++..+...+++++|+..+.+++...+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 199 (291)
T COG0457 160 DPELNELAEALLALGALLEALGRYEEALELLEKALKLNPD 199 (291)
T ss_pred CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcc
Confidence 76 35666777777778888888888888888887765
No 254
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.056 Score=49.90 Aligned_cols=99 Identities=18% Similarity=0.160 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHH------
Q 013843 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSK------ 392 (435)
Q Consensus 319 ~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~------ 392 (435)
......+..+...+++..|...|..++...+... .+..-+|.||+..|+.+.|...+..
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~---------------~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~ 199 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENS---------------EAKLLLAECLLAAGDVEAAQAILAALPLQAQ 199 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccc---------------hHHHHHHHHHHHcCChHHHHHHHHhCcccch
Confidence 3456678889999999999999999999988764 3366778888888877554433322
Q ss_pred ----------------------------HHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC
Q 013843 393 ----------------------------VLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADP 432 (435)
Q Consensus 393 ----------------------------al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P 432 (435)
.+..+|++..+-+.+|..+...|+.++|++.+-..++.|-
T Consensus 200 ~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~ 267 (304)
T COG3118 200 DKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDR 267 (304)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 2334899999999999999999999999999988887653
No 255
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.46 E-value=0.061 Score=42.21 Aligned_cols=103 Identities=17% Similarity=0.161 Sum_probs=77.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHH----HHHccCHHHHHHHHHHHHhhCCC
Q 013843 324 EGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAAC----CLKLKDYQGAIELCSKVLDCDCH 399 (435)
Q Consensus 324 ~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~----~~~~~~~~~A~~~~~~al~~~p~ 399 (435)
.|..+|++|++-+|++..+..+....++... .-+..+...+++.+|.. -.+..-...|++++.++..+.|.
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~-----~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~ 76 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESS-----WLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPD 76 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCch-----HHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChh
Confidence 5678999999999999999999887665432 02333333444444432 22222356799999999999999
Q ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Q 013843 400 NVKALYRRAQAYMEIADLILAELDIKKAIEAD 431 (435)
Q Consensus 400 ~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~ 431 (435)
.+..+|.+|.=+-....|+++..-.+++|.+.
T Consensus 77 ~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 77 SAHSLFELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 99999999998888888999999999998764
No 256
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.44 E-value=0.043 Score=60.60 Aligned_cols=64 Identities=25% Similarity=0.054 Sum_probs=47.3
Q ss_pred HHHhHHHHHHHHccCHHHHHHHHHHHHhhCCC--------CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Q 013843 368 SCWLNSAACCLKLKDYQGAIELCSKVLDCDCH--------NVKALYRRAQAYMEIADLILAELDIKKAIEAD 431 (435)
Q Consensus 368 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~--------~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~ 431 (435)
.++.++|.++...|++++|...+.+++.+... ....+..+|.++...|++++|...+.+++.+.
T Consensus 532 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~ 603 (903)
T PRK04841 532 WSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVL 603 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhh
Confidence 45677888888888888888888888875211 12345567888888888888888888887653
No 257
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.35 E-value=0.071 Score=46.38 Aligned_cols=102 Identities=15% Similarity=0.090 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHH
Q 013843 315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVL 394 (435)
Q Consensus 315 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 394 (435)
.+....+.+.|+.|.+.|+++.|++.|.++.+..... ...+..++++-.+.+..++|..+..+..+|-
T Consensus 33 esir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~------------~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 33 ESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSP------------GHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCH------------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3445678899999999999999999999988765332 3456778899999999999999999999987
Q ss_pred hhCCC--CH----HHHHHHHHHHHhcccHHHHHHHHHHHH
Q 013843 395 DCDCH--NV----KALYRRAQAYMEIADLILAELDIKKAI 428 (435)
Q Consensus 395 ~~~p~--~~----~a~~~~a~~~~~lg~~~eA~~~~~~al 428 (435)
.+-.. +. +.....|.+++..++|.+|-+.|-.++
T Consensus 101 ~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 101 SLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccC
Confidence 66322 22 223445777788899999998886654
No 258
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.21 E-value=0.096 Score=50.13 Aligned_cols=116 Identities=19% Similarity=0.180 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCC-----------CCChHH-----HHHHH----HHHHHHHh
Q 013843 312 QGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDG-----------SFVDDE-----QKLVK----SLRVSCWL 371 (435)
Q Consensus 312 ~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~-----------~~~~~~-----~~~~~----~~~~~~~~ 371 (435)
.-+..++......|...+-.|+|.+|.+...++-+.-+... ...+++ ..+.. .-....+.
T Consensus 78 ~rKrrra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~l 157 (400)
T COG3071 78 RRKRRRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVEL 157 (400)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHH
Confidence 35677888889999999999999999999888655322100 000000 00111 11223455
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 013843 372 NSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKA 427 (435)
Q Consensus 372 nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~a 427 (435)
.++......+++..|.....++++..|.++.++....++|..+|+|.+....+.+.
T Consensus 158 trarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L 213 (400)
T COG3071 158 TRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKL 213 (400)
T ss_pred HHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 56666666777777777777777777777777777777777777777766655543
No 259
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.20 E-value=0.07 Score=58.95 Aligned_cols=99 Identities=11% Similarity=0.007 Sum_probs=79.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCC-
Q 013843 322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN- 400 (435)
Q Consensus 322 ~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~- 400 (435)
...|..++..|+++.|...+++++...+... ......++.++|.++...|++++|...+.+++......
T Consensus 456 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~----------~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g 525 (903)
T PRK04841 456 ALRAQVAINDGDPEEAERLAELALAELPLTW----------YYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHD 525 (903)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc----------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhc
Confidence 3456778899999999999999998644321 11133456789999999999999999999999763321
Q ss_pred -----HHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q 013843 401 -----VKALYRRAQAYMEIADLILAELDIKKAIEA 430 (435)
Q Consensus 401 -----~~a~~~~a~~~~~lg~~~eA~~~~~~al~l 430 (435)
..++..+|.++...|++++|...+.+++.+
T Consensus 526 ~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~ 560 (903)
T PRK04841 526 VYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQL 560 (903)
T ss_pred chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 356788899999999999999999999876
No 260
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.12 E-value=0.033 Score=55.74 Aligned_cols=85 Identities=14% Similarity=0.061 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhh
Q 013843 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC 396 (435)
Q Consensus 317 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 396 (435)
.-+.+++.|..+...|+|.+|++.+.+|+++........+...++++.....+...+|.++..+|+-++|...|...+..
T Consensus 174 syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~ 253 (652)
T KOG2376|consen 174 SYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKR 253 (652)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh
Confidence 45678899999999999999999999998887654443333456677778888999999999999999999999999999
Q ss_pred CCCCH
Q 013843 397 DCHNV 401 (435)
Q Consensus 397 ~p~~~ 401 (435)
+|.+.
T Consensus 254 ~~~D~ 258 (652)
T KOG2376|consen 254 NPADE 258 (652)
T ss_pred cCCCc
Confidence 87654
No 261
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.10 E-value=0.027 Score=51.84 Aligned_cols=85 Identities=12% Similarity=0.024 Sum_probs=72.7
Q ss_pred HHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 013843 328 LFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRR 407 (435)
Q Consensus 328 ~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~ 407 (435)
+.+..+|..||+....-.+..|... ..+.-+|.||+..++|..|-.+|++.-.+.|...+.-+.-
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~r---------------AgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~ 84 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSR---------------AGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQ 84 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccch---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH
Confidence 3667788899988887777666432 4477899999999999999999999999999999999999
Q ss_pred HHHHHhcccHHHHHHHHHHH
Q 013843 408 AQAYMEIADLILAELDIKKA 427 (435)
Q Consensus 408 a~~~~~lg~~~eA~~~~~~a 427 (435)
|+.+++.+.+.+|++.....
T Consensus 85 AQSLY~A~i~ADALrV~~~~ 104 (459)
T KOG4340|consen 85 AQSLYKACIYADALRVAFLL 104 (459)
T ss_pred HHHHHHhcccHHHHHHHHHh
Confidence 99999999999998876654
No 262
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=95.96 E-value=0.086 Score=41.90 Aligned_cols=82 Identities=15% Similarity=0.001 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHH----Hh
Q 013843 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKV----LD 395 (435)
Q Consensus 320 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a----l~ 395 (435)
++-..|+..++.+++-.|+-+|++|+.+..........+..++....+....|+|.-+..+|+-+-.++|.+-| +.
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vlt 82 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLT 82 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 46678999999999999999999999988766444455666677777788899999999999999999988755 55
Q ss_pred hCCCCH
Q 013843 396 CDCHNV 401 (435)
Q Consensus 396 ~~p~~~ 401 (435)
+-|..+
T Consensus 83 LiPQCp 88 (140)
T PF10952_consen 83 LIPQCP 88 (140)
T ss_pred hccCCC
Confidence 666543
No 263
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=95.86 E-value=0.052 Score=58.10 Aligned_cols=63 Identities=10% Similarity=0.047 Sum_probs=54.7
Q ss_pred HHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q 013843 368 SCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEA 430 (435)
Q Consensus 368 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l 430 (435)
.+|..+...+...|+++.|...++++++++|++...|..++.+|...|++++|.+.++...+.
T Consensus 495 ~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 495 NMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 457777777888999999999999999999999999999999999999999999998876543
No 264
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.85 E-value=0.23 Score=46.58 Aligned_cols=121 Identities=19% Similarity=0.141 Sum_probs=88.4
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHH
Q 013843 308 EMNNQGKIEAAGRKKEEGNLLFKNG-KYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGA 386 (435)
Q Consensus 308 ~~~~~~~~~~a~~~~~~g~~~~~~g-~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A 386 (435)
.+++......+..+++.|..+++++ +|+.|+..+++|+++.+.... .+.......+++..++..++.+|+..+.++..
T Consensus 25 ~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~-~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~ 103 (278)
T PF08631_consen 25 SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGK-MDKLSPDGSELRLSILRLLANAYLEWDTYESV 103 (278)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhh-ccccCCcHHHHHHHHHHHHHHHHHcCCChHHH
Confidence 3456677788999999999999999 999999999999999644110 01122345678899999999999998886543
Q ss_pred HHHHHHHH----hhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q 013843 387 IELCSKVL----DCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEA 430 (435)
Q Consensus 387 ~~~~~~al----~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l 430 (435)
.+ |.+++ ...|+.+..++..=.++...++.+++.+.+.+.+.-
T Consensus 104 ~k-a~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 104 EK-ALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HH-HHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 33 44443 345776777755556666678888888888887754
No 265
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.81 E-value=0.29 Score=44.01 Aligned_cols=104 Identities=14% Similarity=0.090 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhh-
Q 013843 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC- 396 (435)
Q Consensus 318 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~- 396 (435)
+..+-..++.+-..++|++|...+.+|.+...++..+ -..+..|-..+....++..|.++..++++|..+
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrsl---------fhAAKayEqaamLake~~klsEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSL---------FHAAKAYEQAAMLAKELSKLSEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccH---------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4455556666677788999999999998766554332 123344555566666777788888888887765
Q ss_pred ----CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q 013843 397 ----DCHNVKALYRRAQAYMEIADLILAELDIKKAIEA 430 (435)
Q Consensus 397 ----~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l 430 (435)
.|+-+..-.-+|--..+.-+.++|++.|++++.+
T Consensus 102 ~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralav 139 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAV 139 (308)
T ss_pred HHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence 2333333333333344556677777777777665
No 266
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=95.69 E-value=0.12 Score=47.49 Aligned_cols=74 Identities=18% Similarity=0.141 Sum_probs=65.4
Q ss_pred CChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 013843 354 FVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKA 427 (435)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~a 427 (435)
+.+++.+.+..+...++...|..|.+.+.+.+|+..+++++.++|-+...+..+-..|..+|+--+|...|++-
T Consensus 266 Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 266 WAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 34466777888888888889999999999999999999999999999999999999999999988888777654
No 267
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=95.66 E-value=0.047 Score=50.00 Aligned_cols=71 Identities=17% Similarity=0.208 Sum_probs=64.4
Q ss_pred HHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Q 013843 365 LRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (435)
Q Consensus 365 ~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n~ 435 (435)
.......|+=..|...++|+.|..+..+.+.++|.++.-+--+|.+|.++|.+.-|+.++...++.-|+++
T Consensus 179 il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~ 249 (269)
T COG2912 179 ILSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDP 249 (269)
T ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCch
Confidence 34455667778899999999999999999999999999999999999999999999999999999998864
No 268
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.60 E-value=0.18 Score=49.88 Aligned_cols=102 Identities=20% Similarity=0.150 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhh-CC
Q 013843 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC-DC 398 (435)
Q Consensus 320 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~-~p 398 (435)
..+..|..+-+.|+.++|++.|+..++..|.... ..++.|+..|++.++.|.++.....+-=++ -|
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~-------------l~IrenLie~LLelq~Yad~q~lL~kYdDi~lp 327 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDN-------------LNIRENLIEALLELQAYADVQALLAKYDDISLP 327 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccch-------------hhHHHHHHHHHHhcCCHHHHHHHHHHhccccCC
Confidence 4456888899999999999999999988875432 367899999999999999988877774332 25
Q ss_pred CCHHHHHHHHHHHHh-ccc---------------HHHHHHHHHHHHHhCCCC
Q 013843 399 HNVKALYRRAQAYME-IAD---------------LILAELDIKKAIEADPQN 434 (435)
Q Consensus 399 ~~~~a~~~~a~~~~~-lg~---------------~~eA~~~~~~al~l~P~n 434 (435)
+.+...|..|....+ .++ -..|.+.+.+|++.+|.-
T Consensus 328 kSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHV 379 (539)
T PF04184_consen 328 KSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHV 379 (539)
T ss_pred chHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCC
Confidence 556555655543322 111 134778999999999964
No 269
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.56 E-value=0.045 Score=41.76 Aligned_cols=49 Identities=18% Similarity=0.173 Sum_probs=41.0
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 013843 386 AIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 386 A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
.+..++++++.+|++..+.|.+|..+...|++++|++.+..+++.+++.
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 4567888999999999999999999999999999999999999888764
No 270
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.54 E-value=0.032 Score=54.62 Aligned_cols=109 Identities=18% Similarity=0.123 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHh-h--
Q 013843 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD-C-- 396 (435)
Q Consensus 320 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~-~-- 396 (435)
.+.-.++.+|..|+|.+|.+.+...---.......+ -+-.....++|+|.++++++.|..+..+|.+||+ .
T Consensus 242 ~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T------~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~ 315 (696)
T KOG2471|consen 242 ALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTIT------PQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCS 315 (696)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHhcccccccCcccc------chhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHH
Confidence 445566778888888888877654311111010011 0111234468999999999999999999999996 1
Q ss_pred ------CC---------CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 013843 397 ------DC---------HNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 397 ------~p---------~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
.| .....+|+.|..|+..|+.-.|.++|.++...--.|
T Consensus 316 qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~n 368 (696)
T KOG2471|consen 316 QLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRN 368 (696)
T ss_pred HHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcC
Confidence 11 134779999999999999999999999998764433
No 271
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.54 E-value=0.029 Score=35.46 Aligned_cols=29 Identities=28% Similarity=0.281 Sum_probs=23.2
Q ss_pred HHHhHHHHHHHHccCHHHHHHHHHHHHhh
Q 013843 368 SCWLNSAACCLKLKDYQGAIELCSKVLDC 396 (435)
Q Consensus 368 ~~~~nla~~~~~~~~~~~A~~~~~~al~~ 396 (435)
.++.|+|.+|..+|+|++|+.++.+++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 56788888888888888888888888875
No 272
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.54 E-value=0.017 Score=56.44 Aligned_cols=99 Identities=14% Similarity=0.085 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HhccCC-CCChH-HHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHH
Q 013843 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAAD-CVSEDG-SFVDD-EQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSK 392 (435)
Q Consensus 316 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~-~~~~~~-~~~~~-~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 392 (435)
.....+.+.|..+|+.+.|..++.+|.+||+ .+.... .+... -..-.......+++|.|..|+..|+...|.+++.+
T Consensus 281 ~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~ 360 (696)
T KOG2471|consen 281 SSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQK 360 (696)
T ss_pred hhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHH
Confidence 3455667889999999999999999999996 221100 00000 00011222446789999999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHhc
Q 013843 393 VLDCDCHNVKALYRRAQAYMEI 414 (435)
Q Consensus 393 al~~~p~~~~a~~~~a~~~~~l 414 (435)
+.+.-..|+..|.|+|.|.+..
T Consensus 361 av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 361 AVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred HHHHHhcCcHHHHHHHHHHHHH
Confidence 9999999999999999998754
No 273
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.50 E-value=0.29 Score=47.32 Aligned_cols=116 Identities=18% Similarity=0.085 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HhccCCCCC------------------hHHHHHHHHHHHHHHhHHHHHHH
Q 013843 318 AGRKKEEGNLLFKNGKYERAGKKYNKAAD-CVSEDGSFV------------------DDEQKLVKSLRVSCWLNSAACCL 378 (435)
Q Consensus 318 a~~~~~~g~~~~~~g~y~~A~~~y~~al~-~~~~~~~~~------------------~~~~~~~~~~~~~~~~nla~~~~ 378 (435)
.....+.+..+...|+...|+...+..+. ......... ...........+.+++.+|.-..
T Consensus 184 ~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~ 263 (352)
T PF02259_consen 184 PRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLD 263 (352)
T ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHH
Confidence 34455566677777777888888777777 222210000 00123345666778888888777
Q ss_pred Hc------cCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccH-----------------HHHHHHHHHHHHhCCC
Q 013843 379 KL------KDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADL-----------------ILAELDIKKAIEADPQ 433 (435)
Q Consensus 379 ~~------~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~-----------------~eA~~~~~~al~l~P~ 433 (435)
.+ +.+++++..|.+|++++|.+.++|+..|..+..+=+. ..|+..|-+|+.+.+.
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 264 ELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred hhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 77 8899999999999999999999999999988766332 3488999999988775
No 274
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=95.44 E-value=0.19 Score=36.72 Aligned_cols=69 Identities=16% Similarity=0.250 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHh
Q 013843 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD 395 (435)
Q Consensus 316 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 395 (435)
..+....+.|..+|...+.++|+..++++|+..++.. .+..++-.++.+|...|+|.+++.+..+=++
T Consensus 4 ~~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~------------~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 4 DQAKQQIEKGLKLYHQNETQQALQKWRKALEKITDRE------------DRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888999999999999999999999999876532 2456677788899999999999988776555
Q ss_pred h
Q 013843 396 C 396 (435)
Q Consensus 396 ~ 396 (435)
+
T Consensus 72 ~ 72 (80)
T PF10579_consen 72 I 72 (80)
T ss_pred H
Confidence 4
No 275
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.36 E-value=0.3 Score=45.35 Aligned_cols=74 Identities=14% Similarity=0.151 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q 013843 357 DEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEA 430 (435)
Q Consensus 357 ~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l 430 (435)
++.....+....++..++..+...++++.++...++.++++|-+..+|.++-.+|+..|+...|+..|++.-++
T Consensus 143 ~~R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 143 EQRRALEELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 34456777888999999999999999999999999999999999999999999999999999999999988764
No 276
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.36 E-value=0.16 Score=50.19 Aligned_cols=118 Identities=17% Similarity=0.088 Sum_probs=81.3
Q ss_pred ChHHHHHHHHHHHHHH----HHH--HH---cCCHHHHHHHHHHHHHHhccCCCCCh------HHHHH----HHHHHHHHH
Q 013843 310 NNQGKIEAAGRKKEEG----NLL--FK---NGKYERAGKKYNKAADCVSEDGSFVD------DEQKL----VKSLRVSCW 370 (435)
Q Consensus 310 ~~~~~~~~a~~~~~~g----~~~--~~---~g~y~~A~~~y~~al~~~~~~~~~~~------~~~~~----~~~~~~~~~ 370 (435)
+.+.+++.|.+-.+.- .+| .. ..-..+|.++|++|++........+. ..++. .-....-+.
T Consensus 183 np~aRIkaA~eALei~pdCAdAYILLAEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~K 262 (539)
T PF04184_consen 183 NPQARIKAAKEALEINPDCADAYILLAEEEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAK 262 (539)
T ss_pred CHHHHHHHHHHHHHhhhhhhHHHhhcccccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhH
Confidence 5666776666555432 222 22 22367888999999886544322110 01111 111224456
Q ss_pred hHHHHHHHHccCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 013843 371 LNSAACCLKLKDYQGAIELCSKVLDCDCH--NVKALYRRAQAYMEIADLILAELDIKKA 427 (435)
Q Consensus 371 ~nla~~~~~~~~~~~A~~~~~~al~~~p~--~~~a~~~~a~~~~~lg~~~eA~~~~~~a 427 (435)
..+|.|..++|+.++|++.++..++..|. +...++++-.+++.++.|.++.+.+.+-
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 77999999999999999999999988775 5678999999999999999999888774
No 277
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.35 E-value=0.0056 Score=57.29 Aligned_cols=58 Identities=22% Similarity=0.296 Sum_probs=54.1
Q ss_pred HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 013843 377 CLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 377 ~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
.+..|+++.|+++|..+++++|.....|-.++.+++.+++...|+++|..|++++|+.
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Ds 181 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDS 181 (377)
T ss_pred HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCccc
Confidence 3456779999999999999999999999999999999999999999999999999964
No 278
>PLN03218 maturation of RBCL 1; Provisional
Probab=95.26 E-value=0.3 Score=54.38 Aligned_cols=62 Identities=8% Similarity=-0.036 Sum_probs=40.4
Q ss_pred HHhHHHHHHHHccCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q 013843 369 CWLNSAACCLKLKDYQGAIELCSKVLDCD-CHNVKALYRRAQAYMEIADLILAELDIKKAIEA 430 (435)
Q Consensus 369 ~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l 430 (435)
.|..+-.+|.+.|++++|.+.++++.+.+ +.+...|..+..+|.+.|++++|++.|++..+.
T Consensus 581 TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~ 643 (1060)
T PLN03218 581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK 643 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 45556666777777777777777776665 345566666666666777777777766665543
No 279
>PRK10941 hypothetical protein; Provisional
Probab=95.26 E-value=0.18 Score=46.85 Aligned_cols=79 Identities=14% Similarity=-0.066 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhC
Q 013843 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD 397 (435)
Q Consensus 318 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 397 (435)
.+-+.+.=..+.+.++|+.|+...+..+.+.|.++. -+.-+|.+|.+++.+..|+.+++.-++..
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~---------------e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDPY---------------EIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHH---------------HHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 345556667889999999999999999999998762 26679999999999999999999999999
Q ss_pred CCCHHHHHHHHHHH
Q 013843 398 CHNVKALYRRAQAY 411 (435)
Q Consensus 398 p~~~~a~~~~a~~~ 411 (435)
|+.+.+-.-+.++.
T Consensus 246 P~dp~a~~ik~ql~ 259 (269)
T PRK10941 246 PEDPISEMIRAQIH 259 (269)
T ss_pred CCchhHHHHHHHHH
Confidence 99998876655544
No 280
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=95.25 E-value=0.11 Score=48.79 Aligned_cols=94 Identities=15% Similarity=0.063 Sum_probs=58.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHH-ccCHHHHHHHHHHHHhhCCCCHH
Q 013843 324 EGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLK-LKDYQGAIELCSKVLDCDCHNVK 402 (435)
Q Consensus 324 ~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-~~~~~~A~~~~~~al~~~p~~~~ 402 (435)
..+..-+.+..+.|...|.+|++..... ..+|...|..-++ .++.+.|...|+.+++.-|.+..
T Consensus 7 ~m~~~~r~~g~~~aR~vF~~a~~~~~~~---------------~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~ 71 (280)
T PF05843_consen 7 YMRFMRRTEGIEAARKVFKRARKDKRCT---------------YHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPD 71 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCCS----------------THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHhCChHHHHHHHHHHHcCCCCC---------------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHH
Confidence 3344444445677777777776322111 1446666666444 45566688888888887777777
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCC
Q 013843 403 ALYRRAQAYMEIADLILAELDIKKAIEADP 432 (435)
Q Consensus 403 a~~~~a~~~~~lg~~~eA~~~~~~al~l~P 432 (435)
.|..-..-+..+++.+.|+..|++++..-|
T Consensus 72 ~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~ 101 (280)
T PF05843_consen 72 FWLEYLDFLIKLNDINNARALFERAISSLP 101 (280)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHCCTSS
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcC
Confidence 777777777777888888888887776544
No 281
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.25 E-value=0.14 Score=42.70 Aligned_cols=65 Identities=12% Similarity=0.054 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHh
Q 013843 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD 395 (435)
Q Consensus 316 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 395 (435)
.....+...+..+...|++++|+..+++++..+|.+. .+|..+-.+|..+|++.+|+..|++...
T Consensus 60 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E---------------~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 60 LYLDALERLAEALLEAGDYEEALRLLQRALALDPYDE---------------EAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H---------------HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCH---------------HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3455667778888999999999999999999998764 5588888999999999999999988754
No 282
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.20 E-value=0.17 Score=49.71 Aligned_cols=97 Identities=19% Similarity=0.104 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhC
Q 013843 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD 397 (435)
Q Consensus 318 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 397 (435)
+..+.-.|....++.+...|.+.+..||..+|.+.-+ -.--..-+++++++.+...|.+-|+..
T Consensus 404 aKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlF----------------k~YIelElqL~efDRcRkLYEkfle~~ 467 (677)
T KOG1915|consen 404 AKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLF----------------KGYIELELQLREFDRCRKLYEKFLEFS 467 (677)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHH----------------HHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3344444444555555556666666666555543211 111122456789999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q 013843 398 CHNVKALYRRAQAYMEIADLILAELDIKKAIEA 430 (435)
Q Consensus 398 p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l 430 (435)
|.|..+|...|..-..||+.+.|+..|.-|+..
T Consensus 468 Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~q 500 (677)
T KOG1915|consen 468 PENCYAWSKYAELETSLGDTDRARAIFELAISQ 500 (677)
T ss_pred hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcC
Confidence 999999999999999999999999999988753
No 283
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=95.11 E-value=0.15 Score=50.20 Aligned_cols=121 Identities=16% Similarity=0.185 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHcc--C-----HHHH
Q 013843 314 KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK--D-----YQGA 386 (435)
Q Consensus 314 ~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~--~-----~~~A 386 (435)
.+.......+.|..++..|+|.+|+..|+.+|...+-....+.++..+++++...+.-.+-.+.+++. . .++.
T Consensus 200 ~l~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~ 279 (422)
T PF06957_consen 200 SLSSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQ 279 (422)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhH
Confidence 45566667788999999999999999999999998876555566777777777666433322322221 1 1222
Q ss_pred HHHHHHHH-----hhCCCCHHHHHHHHHH-HHhcccHHHHHHHHHHHHHhCCCC
Q 013843 387 IELCSKVL-----DCDCHNVKALYRRAQA-YMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 387 ~~~~~~al-----~~~p~~~~a~~~~a~~-~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
...++-|. ++.|.+...-.|.|.. .+++++|.-|....++.|++.|..
T Consensus 280 kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 280 KRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 22233222 2334443333444443 357888888888888888888753
No 284
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=95.10 E-value=0.63 Score=40.24 Aligned_cols=94 Identities=12% Similarity=-0.056 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 013843 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCH 399 (435)
Q Consensus 320 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~ 399 (435)
-+...++..|..+++..|...++...+..|.-... .-++-.|.++..+|++.+|...++.++..-|
T Consensus 126 ~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~p-------------d~~Ll~aR~laa~g~~a~Aesafe~a~~~yp- 191 (251)
T COG4700 126 MLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSP-------------DGHLLFARTLAAQGKYADAESAFEVAISYYP- 191 (251)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCC-------------CchHHHHHHHHhcCCchhHHHHHHHHHHhCC-
Confidence 45566788899999999999999988887654333 2267789999999999999999999999987
Q ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 013843 400 NVKALYRRAQAYMEIADLILAELDIKKA 427 (435)
Q Consensus 400 ~~~a~~~~a~~~~~lg~~~eA~~~~~~a 427 (435)
.+.+-.+.+.-+..+|+.++|.+.+...
T Consensus 192 g~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 192 GPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 5666667788899999888887665443
No 285
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.09 E-value=0.31 Score=44.45 Aligned_cols=88 Identities=16% Similarity=0.143 Sum_probs=69.0
Q ss_pred CCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 013843 332 GKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAY 411 (435)
Q Consensus 332 g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~ 411 (435)
+++..|.-.|++.-+..+..+ .+++-+|.|++.+++|++|....+.||..+++++..+-++-.+-
T Consensus 187 ek~qdAfyifeE~s~k~~~T~---------------~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a 251 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEKTPPTP---------------LLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLA 251 (299)
T ss_pred hhhhhHHHHHHHHhcccCCCh---------------HHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 457888888887666333322 55788999999999999999999999999999999999999999
Q ss_pred HhcccHHHHHHHH-HHHHHhCCCC
Q 013843 412 MEIADLILAELDI-KKAIEADPQN 434 (435)
Q Consensus 412 ~~lg~~~eA~~~~-~~al~l~P~n 434 (435)
..+|.-.++...+ .+....+|++
T Consensus 252 ~~~Gkd~~~~~r~l~QLk~~~p~h 275 (299)
T KOG3081|consen 252 LHLGKDAEVTERNLSQLKLSHPEH 275 (299)
T ss_pred HHhCCChHHHHHHHHHHHhcCCcc
Confidence 9999876665544 4444445554
No 286
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=95.00 E-value=0.2 Score=49.50 Aligned_cols=85 Identities=21% Similarity=0.233 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcc
Q 013843 336 RAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIA 415 (435)
Q Consensus 336 ~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg 415 (435)
+-...|+.|+...+.+. .++++-..-..+.+.+.+--..|.++|..+|+++..|..-|.=.+..+
T Consensus 89 rIv~lyr~at~rf~~D~---------------~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n 153 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDV---------------KLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEIN 153 (568)
T ss_pred HHHHHHHHHHHhcCCCH---------------HHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhc
Confidence 34567888888777654 446665555555666999999999999999999999999998888877
Q ss_pred c-HHHHHHHHHHHHHhCCCCC
Q 013843 416 D-LILAELDIKKAIEADPQNR 435 (435)
Q Consensus 416 ~-~~eA~~~~~~al~l~P~n~ 435 (435)
. .+.|++.|.++|+.+|+++
T Consensus 154 ~ni~saRalflrgLR~npdsp 174 (568)
T KOG2396|consen 154 LNIESARALFLRGLRFNPDSP 174 (568)
T ss_pred cchHHHHHHHHHHhhcCCCCh
Confidence 6 9999999999999999874
No 287
>PLN03218 maturation of RBCL 1; Provisional
Probab=94.97 E-value=0.42 Score=53.23 Aligned_cols=110 Identities=14% Similarity=0.074 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHh--ccCCC-----------CChHH-HHHHHHH-------HHHHHhHHHHHH
Q 013843 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCV--SEDGS-----------FVDDE-QKLVKSL-------RVSCWLNSAACC 377 (435)
Q Consensus 319 ~~~~~~g~~~~~~g~y~~A~~~y~~al~~~--~~~~~-----------~~~~~-~~~~~~~-------~~~~~~nla~~~ 377 (435)
..+......|.+.|++++|+..|.+..+.. |+... -.-++ .+....+ ...+|..+..+|
T Consensus 615 ~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay 694 (1060)
T PLN03218 615 EVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGAC 694 (1060)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 456666666777777777777777665431 11000 00011 1111111 124567777777
Q ss_pred HHccCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 013843 378 LKLKDYQGAIELCSKVLDC--DCHNVKALYRRAQAYMEIADLILAELDIKKAIE 429 (435)
Q Consensus 378 ~~~~~~~~A~~~~~~al~~--~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~ 429 (435)
.+.|++++|+..|++..+. .| +...|..+..+|.+.|++++|++.|++..+
T Consensus 695 ~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~ 747 (1060)
T PLN03218 695 SNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKR 747 (1060)
T ss_pred HhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7888888888888777553 33 556677777777788888888887776554
No 288
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=94.95 E-value=0.21 Score=38.40 Aligned_cols=65 Identities=15% Similarity=0.184 Sum_probs=50.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhC
Q 013843 327 LLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD 397 (435)
Q Consensus 327 ~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 397 (435)
...+.++|..|++.+.+..+.......... ......+++++|.++...|++++|+..+++|+.+.
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~------~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSS------NSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchh------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 456889999999999999987655432210 12344568899999999999999999999999874
No 289
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=94.94 E-value=0.14 Score=53.77 Aligned_cols=90 Identities=14% Similarity=0.087 Sum_probs=47.9
Q ss_pred HHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 013843 329 FKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRA 408 (435)
Q Consensus 329 ~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a 408 (435)
...++|.+|+....+.++..|+.. .+..--|..++++|++++|..+.+..-...+++...+--+-
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~---------------~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~ 84 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNAL---------------YAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQ 84 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcH---------------HHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHH
Confidence 455666667666666666665532 11223344555556666655333332233344445555555
Q ss_pred HHHHhcccHHHHHHHHHHHHHhCCC
Q 013843 409 QAYMEIADLILAELDIKKAIEADPQ 433 (435)
Q Consensus 409 ~~~~~lg~~~eA~~~~~~al~l~P~ 433 (435)
.+|..++++++|...|++++..+|+
T Consensus 85 ~~y~d~~~~d~~~~~Ye~~~~~~P~ 109 (932)
T KOG2053|consen 85 NVYRDLGKLDEAVHLYERANQKYPS 109 (932)
T ss_pred HHHHHHhhhhHHHHHHHHHHhhCCc
Confidence 5555666666666666666555554
No 290
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.90 E-value=0.31 Score=47.95 Aligned_cols=98 Identities=14% Similarity=0.130 Sum_probs=85.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 013843 321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN 400 (435)
Q Consensus 321 ~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~ 400 (435)
+..-|.--..+++++.|...|++||..+..+ +.+++.-|.+-++.+....|.+.+++|+.+-|.-
T Consensus 76 WikYaqwEesq~e~~RARSv~ERALdvd~r~---------------itLWlkYae~Emknk~vNhARNv~dRAvt~lPRV 140 (677)
T KOG1915|consen 76 WIKYAQWEESQKEIQRARSVFERALDVDYRN---------------ITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRV 140 (677)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhccccc---------------chHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchH
Confidence 4444555567889999999999999876443 4679999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q 013843 401 VKALYRRAQAYMEIADLILAELDIKKAIEADPQ 433 (435)
Q Consensus 401 ~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~ 433 (435)
-+.||.--..-..+|+..-|++.|++-++..|+
T Consensus 141 dqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~ 173 (677)
T KOG1915|consen 141 DQLWYKYIYMEEMLGNIAGARQIFERWMEWEPD 173 (677)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCc
Confidence 999999988889999999999999999999986
No 291
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.89 E-value=0.064 Score=33.81 Aligned_cols=30 Identities=27% Similarity=0.154 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q 013843 401 VKALYRRAQAYMEIADLILAELDIKKAIEA 430 (435)
Q Consensus 401 ~~a~~~~a~~~~~lg~~~eA~~~~~~al~l 430 (435)
..++.++|.+|..+|++++|+.++++++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 357889999999999999999999999976
No 292
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=94.88 E-value=0.29 Score=39.84 Aligned_cols=78 Identities=14% Similarity=0.151 Sum_probs=54.1
Q ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhC
Q 013843 321 KKEEGNLLFKNG---KYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD 397 (435)
Q Consensus 321 ~~~~g~~~~~~g---~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 397 (435)
.++.|-.+.+.. +..+.+..++..++. ..+ +.+..+.+.+|..+.++++|++++.+++..|+.+
T Consensus 35 ~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~--~~~-----------~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 35 QFNLAWALVRSRDTEDVQEGIVILEDLLKS--AHP-----------ERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred HHHHHHHHHcccchHHHHHhHHHHHHHhhh--cCc-----------ccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 344444444433 345566777776651 111 1134678899999999999999999999999999
Q ss_pred CCCHHHHHHHHHHH
Q 013843 398 CHNVKALYRRAQAY 411 (435)
Q Consensus 398 p~~~~a~~~~a~~~ 411 (435)
|+|.+|.-..-.+.
T Consensus 102 ~~n~Qa~~Lk~~ie 115 (149)
T KOG3364|consen 102 PNNRQALELKETIE 115 (149)
T ss_pred CCcHHHHHHHHHHH
Confidence 99998865544433
No 293
>PLN03077 Protein ECB2; Provisional
Probab=94.72 E-value=0.32 Score=53.45 Aligned_cols=60 Identities=12% Similarity=0.059 Sum_probs=47.1
Q ss_pred HhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 013843 370 WLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIE 429 (435)
Q Consensus 370 ~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~ 429 (435)
|..+-.++...++.+.|....+++++++|+++..|..++.+|...|+|++|.+..+...+
T Consensus 660 ~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 660 WGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 444444455677888888888888899999999999999999999999998887766543
No 294
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=94.71 E-value=0.32 Score=52.11 Aligned_cols=115 Identities=10% Similarity=-0.011 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh--ccCCC------------CChHHHHHHHHHH--------HHHHhHHHH
Q 013843 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCV--SEDGS------------FVDDEQKLVKSLR--------VSCWLNSAA 375 (435)
Q Consensus 318 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~--~~~~~------------~~~~~~~~~~~~~--------~~~~~nla~ 375 (435)
...+......|.+.|++++|++.|++.++.. |+... ..++-.+-...+. ...|..+..
T Consensus 391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~ 470 (697)
T PLN03081 391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE 470 (697)
T ss_pred eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHH
Confidence 3456677777788888888888888766531 11000 0001111111111 124666777
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 013843 376 CCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 376 ~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
.|.+.|++++|.+.++++ ...| +...|..+..++...|+++.|...+++.++++|++
T Consensus 471 ~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~ 527 (697)
T PLN03081 471 LLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEK 527 (697)
T ss_pred HHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCC
Confidence 788888888888877654 2333 45668888888888999999999999999998875
No 295
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=94.54 E-value=0.072 Score=33.23 Aligned_cols=30 Identities=20% Similarity=0.120 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Q 013843 402 KALYRRAQAYMEIADLILAELDIKKAIEAD 431 (435)
Q Consensus 402 ~a~~~~a~~~~~lg~~~eA~~~~~~al~l~ 431 (435)
.+|.++|.+-+...+|++|+.+|++||++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 467788888888888888888888888763
No 296
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.33 E-value=0.058 Score=47.88 Aligned_cols=61 Identities=23% Similarity=0.342 Sum_probs=53.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCH
Q 013843 326 NLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNV 401 (435)
Q Consensus 326 ~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~ 401 (435)
..+.+.++++.|.+.|.+++++.|... .-|+.++....+.++++.|...|++.|+++|.+.
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~---------------~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWA---------------AGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhh---------------hhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 345788999999999999999988754 4489999999999999999999999999999763
No 297
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=94.23 E-value=0.26 Score=37.89 Aligned_cols=56 Identities=20% Similarity=0.172 Sum_probs=46.2
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCC---------CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Q 013843 376 CCLKLKDYQGAIELCSKVLDCDCH---------NVKALYRRAQAYMEIADLILAELDIKKAIEAD 431 (435)
Q Consensus 376 ~~~~~~~~~~A~~~~~~al~~~p~---------~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~ 431 (435)
-..+.++|..|++.+.+.+..... ...++.++|..+...|++++|+..+++|+++-
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 346789999999888888765321 24678999999999999999999999999874
No 298
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.18 E-value=0.52 Score=42.45 Aligned_cols=99 Identities=19% Similarity=0.226 Sum_probs=69.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHH----hhC--
Q 013843 324 EGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVL----DCD-- 397 (435)
Q Consensus 324 ~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al----~~~-- 397 (435)
.+-.....-+.+.|+++|++++.+...+.. ..+...++-..+..+.++++|.+|-..+.+-. +.+
T Consensus 116 KAak~lenv~Pd~AlqlYqralavve~~dr---------~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y 186 (308)
T KOG1585|consen 116 KAAKALENVKPDDALQLYQRALAVVEEDDR---------DQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAY 186 (308)
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhccch---------HHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhc
Confidence 344455666788889999999888765432 23344567778888999999999877766543 333
Q ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Q 013843 398 CHNVKALYRRAQAYMEIADLILAELDIKKAIEAD 431 (435)
Q Consensus 398 p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~ 431 (435)
++--+++...-.+|+...+|..|..+++.+.++.
T Consensus 187 ~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip 220 (308)
T KOG1585|consen 187 NSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIP 220 (308)
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCc
Confidence 3334666666666777779999999998876653
No 299
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.15 E-value=0.3 Score=45.93 Aligned_cols=108 Identities=14% Similarity=0.043 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCCh------------H-HHHHHHH----------HHHHHHhHHHH
Q 013843 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVD------------D-EQKLVKS----------LRVSCWLNSAA 375 (435)
Q Consensus 319 ~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~------------~-~~~~~~~----------~~~~~~~nla~ 375 (435)
+.....+..++.+|++.+|...+.+.|.-.|.+.-... . ....+.. ...-++-..|.
T Consensus 104 Ek~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaF 183 (491)
T KOG2610|consen 104 EKRHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAF 183 (491)
T ss_pred HhhhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHh
Confidence 44555677778888888888888888876665421100 0 0000111 11223345688
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHH
Q 013843 376 CCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKK 426 (435)
Q Consensus 376 ~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~ 426 (435)
|+.+.|-|.+|.+..++++++++.+..+...++.++...+++.++++...+
T Consensus 184 gL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 184 GLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred hHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 899999999999999999999999999999999999999999998887654
No 300
>PLN03077 Protein ECB2; Provisional
Probab=94.12 E-value=0.59 Score=51.38 Aligned_cols=115 Identities=13% Similarity=0.085 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hccCCCCC------------hHHHHHHHHHH--------HHHHhHHHH
Q 013843 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADC--VSEDGSFV------------DDEQKLVKSLR--------VSCWLNSAA 375 (435)
Q Consensus 318 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~--~~~~~~~~------------~~~~~~~~~~~--------~~~~~nla~ 375 (435)
...+......|.+.|+.++|++.|++..+. .|+...+. ++-..-...+. ...|..+..
T Consensus 554 ~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~ 633 (857)
T PLN03077 554 VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVD 633 (857)
T ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 345888888899999999999999987763 23221110 00001111111 123555555
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 013843 376 CCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 376 ~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
++.+.|++++|.+.+++. .+.| ++..|-.+-.++...++.+.|....+++++++|+|
T Consensus 634 ~l~r~G~~~eA~~~~~~m-~~~p-d~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~ 690 (857)
T PLN03077 634 LLGRAGKLTEAYNFINKM-PITP-DPAVWGALLNACRIHRHVELGELAAQHIFELDPNS 690 (857)
T ss_pred HHHhCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Confidence 666666666666665553 2333 24445455455555666666666666667777765
No 301
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.96 E-value=0.43 Score=44.93 Aligned_cols=59 Identities=12% Similarity=-0.033 Sum_probs=47.9
Q ss_pred HHHHccCHHHHHHHHHHHHhh-CCCC---HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 013843 376 CCLKLKDYQGAIELCSKVLDC-DCHN---VKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 376 ~~~~~~~~~~A~~~~~~al~~-~p~~---~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
+++.+|+...-....++++-. +++- .-..=..+.++...|-|++|.+.-+++++++|.|
T Consensus 146 a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D 208 (491)
T KOG2610|consen 146 AHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFD 208 (491)
T ss_pred HHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcc
Confidence 566688888888888898876 6665 3344456788999999999999999999999976
No 302
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=93.83 E-value=0.7 Score=51.19 Aligned_cols=66 Identities=18% Similarity=0.073 Sum_probs=58.9
Q ss_pred HHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q 013843 368 SCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQ 433 (435)
Q Consensus 368 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~ 433 (435)
.+|..|+-.|.+.+++++|.+.++..++.-....+.|.+.|..++..++-+.|...+.+||+.-|.
T Consensus 1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK 1596 (1710)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch
Confidence 446778888999999999999999999887788899999999999999999999999999998875
No 303
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=93.80 E-value=0.65 Score=43.65 Aligned_cols=99 Identities=19% Similarity=0.169 Sum_probs=74.7
Q ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 013843 321 KKEEGNLLFK-NGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCH 399 (435)
Q Consensus 321 ~~~~g~~~~~-~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~ 399 (435)
+...|..-+. .++.+.|...|+.+++..+.+. ..++.-...+.++++...|...+++++..-|.
T Consensus 38 y~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~---------------~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~ 102 (280)
T PF05843_consen 38 YVAYALMEYYCNKDPKRARKIFERGLKKFPSDP---------------DFWLEYLDFLIKLNDINNARALFERAISSLPK 102 (280)
T ss_dssp HHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-H---------------HHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCH---------------HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCc
Confidence 4444555455 6777779999999999998764 33555556777899999999999999988765
Q ss_pred CH---HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 013843 400 NV---KALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 400 ~~---~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
.. ..|-+...--...|+.+...+..+++.++-|++
T Consensus 103 ~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 103 EKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 54 466667777788899999999999999988764
No 304
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.79 E-value=0.31 Score=49.57 Aligned_cols=68 Identities=21% Similarity=0.150 Sum_probs=60.0
Q ss_pred HHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 013843 367 VSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN------VKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 367 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~------~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
..++-|-|.-++++++|..+++.|...+..-|.+ +|....++.||+.+.+.|.|++.+..|-+.+|.+
T Consensus 354 H~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~ 427 (872)
T KOG4814|consen 354 HTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQS 427 (872)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccc
Confidence 3456677889999999999999999999876543 6888889999999999999999999999999876
No 305
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=93.72 E-value=0.24 Score=30.52 Aligned_cols=33 Identities=18% Similarity=-0.013 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhcccHHHHHHH--HHHHHHhCCCC
Q 013843 402 KALYRRAQAYMEIADLILAELD--IKKAIEADPQN 434 (435)
Q Consensus 402 ~a~~~~a~~~~~lg~~~eA~~~--~~~al~l~P~n 434 (435)
+.++.+|..+...|++++|+.. |+-+..++|.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 4567777777778888888888 44777777765
No 306
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.68 E-value=1.4 Score=43.36 Aligned_cols=113 Identities=12% Similarity=0.006 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHhccCCCCCh----------------HHH----------------
Q 013843 313 GKIEAAGRKKEEGNLLFKNGK-YERAGKKYNKAADCVSEDGSFVD----------------DEQ---------------- 359 (435)
Q Consensus 313 ~~~~~a~~~~~~g~~~~~~g~-y~~A~~~y~~al~~~~~~~~~~~----------------~~~---------------- 359 (435)
++.+.+.-+...|..+.+.|. -++|+++++.++...+.+..... ...
T Consensus 374 DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~ 453 (549)
T PF07079_consen 374 DRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLT 453 (549)
T ss_pred cHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCC
Confidence 455566667777888888887 67788888877776554431100 000
Q ss_pred -HHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHH
Q 013843 360 -KLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKK 426 (435)
Q Consensus 360 -~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~ 426 (435)
..+.+....-.+.=|.-++..|+|.+|..++.=..+++| .+.+|..+|.|++...+|++|..++..
T Consensus 454 ~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 454 PITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred cccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 000111112233334557789999999999999999999 999999999999999999999998864
No 307
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.63 E-value=0.3 Score=49.48 Aligned_cols=86 Identities=10% Similarity=-0.004 Sum_probs=69.6
Q ss_pred cCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCC----HHHHHH
Q 013843 331 NGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN----VKALYR 406 (435)
Q Consensus 331 ~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~----~~a~~~ 406 (435)
..+.+.|.+.....+...|+.. -.++..|..+...++.++|+..+++++...... .-++|.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~---------------lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~E 310 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSA---------------LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFE 310 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcH---------------HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHH
Confidence 4456667777777777777643 347889999999999999999999998644332 456899
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHhC
Q 013843 407 RAQAYMEIADLILAELDIKKAIEAD 431 (435)
Q Consensus 407 ~a~~~~~lg~~~eA~~~~~~al~l~ 431 (435)
+|.+++.+.+|++|..+|.+.++.+
T Consensus 311 l~w~~~~~~~w~~A~~~f~~L~~~s 335 (468)
T PF10300_consen 311 LAWCHMFQHDWEEAAEYFLRLLKES 335 (468)
T ss_pred HHHHHHHHchHHHHHHHHHHHHhcc
Confidence 9999999999999999999988754
No 308
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=93.46 E-value=0.57 Score=49.51 Aligned_cols=96 Identities=16% Similarity=0.050 Sum_probs=73.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH
Q 013843 324 EGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKA 403 (435)
Q Consensus 324 ~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a 403 (435)
.|-.+++.|++++|. .+-+++...+.+. -..+--+-.||..++++++|...|++++..+|+ .+.
T Consensus 49 kaLsl~r~gk~~ea~-~~Le~~~~~~~~D--------------~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eel 112 (932)
T KOG2053|consen 49 KALSLFRLGKGDEAL-KLLEALYGLKGTD--------------DLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EEL 112 (932)
T ss_pred HHHHHHHhcCchhHH-HHHhhhccCCCCc--------------hHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHH
Confidence 467788999999999 4445555443331 133566788999999999999999999999998 888
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Q 013843 404 LYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (435)
Q Consensus 404 ~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n~ 435 (435)
++.+=.||.+-++|.+=.+.--+..+.-|+++
T Consensus 113 l~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~ 144 (932)
T KOG2053|consen 113 LYHLFMAYVREKSYKKQQKAALQLYKNFPKRA 144 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 88888899999888776555555555667654
No 309
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.37 E-value=0.94 Score=41.32 Aligned_cols=72 Identities=13% Similarity=0.091 Sum_probs=57.6
Q ss_pred HHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Q 013843 364 SLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD------CHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (435)
Q Consensus 364 ~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~------p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n~ 435 (435)
+....+...++...++.|+.+.|..+++++-+.+ ..+.-.+.+++.+|...++|.+|...|.+++..||.|.
T Consensus 209 e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~ 286 (366)
T KOG2796|consen 209 EQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNA 286 (366)
T ss_pred cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCch
Confidence 3445667889999999999999999999665432 22345677788888888999999999999999999763
No 310
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=93.19 E-value=0.42 Score=52.07 Aligned_cols=99 Identities=11% Similarity=0.089 Sum_probs=71.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHc-------cCHHHHHHHHHHHHhh
Q 013843 324 EGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKL-------KDYQGAIELCSKVLDC 396 (435)
Q Consensus 324 ~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~-------~~~~~A~~~~~~al~~ 396 (435)
-.+++...+.|++|+..|++.-...|...+- -.+.+.+|.+.+.. ..+.+|+.-+++. .-
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 547 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEG------------YEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HG 547 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCCcccc------------hHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cC
Confidence 3466788889999999999998888765432 23455666665542 2466666666543 33
Q ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Q 013843 397 DCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQNR 435 (435)
Q Consensus 397 ~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n~ 435 (435)
.|.-+--|...|.+|..+|+|+|-+++|..|++.-|+++
T Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (932)
T PRK13184 548 GVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHP 586 (932)
T ss_pred CCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCC
Confidence 456667788888889999999999999999999888764
No 311
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.90 E-value=0.72 Score=44.55 Aligned_cols=97 Identities=14% Similarity=0.115 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhC-
Q 013843 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD- 397 (435)
Q Consensus 319 ~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~- 397 (435)
..+.+.|..|+..|+++.|++.|.++-.++... +..+..+.|+-.+-..+++|.....+-.+|...-
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~------------khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~ 218 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSA------------KHVINMCLNLILVSIYMGNWGHVLSYISKAESTPD 218 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcch------------HHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCch
Confidence 456678899999999999999999977766442 3346778888888899999999998888887651
Q ss_pred -------CCCHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 013843 398 -------CHNVKALYRRAQAYMEIADLILAELDIKKA 427 (435)
Q Consensus 398 -------p~~~~a~~~~a~~~~~lg~~~eA~~~~~~a 427 (435)
.-.++.....|.+++.+++|..|.++|-.+
T Consensus 219 ~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 219 ANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred hhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 112466677888999999999999988654
No 312
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.69 E-value=2.7 Score=41.68 Aligned_cols=99 Identities=22% Similarity=0.169 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHh-
Q 013843 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD- 395 (435)
Q Consensus 317 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~- 395 (435)
.++.+.-.|.....-+.|+.|..+|..|.+.... .++.+.+-.|+|..|++.++-+ ++.++++
T Consensus 366 ~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~------------~dl~a~~nlnlAi~YL~~~~~e----d~y~~ld~ 429 (629)
T KOG2300|consen 366 EAQIHMLLGLYSHSVNCYENAEFHFIEATKLTES------------IDLQAFCNLNLAISYLRIGDAE----DLYKALDL 429 (629)
T ss_pred HHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhH------------HHHHHHHHHhHHHHHHHhccHH----HHHHHHHh
Confidence 3444555677778889999999999999987532 2446677889999999976633 3445554
Q ss_pred hCCCC----------HHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Q 013843 396 CDCHN----------VKALYRRAQAYMEIADLILAELDIKKAIEAD 431 (435)
Q Consensus 396 ~~p~~----------~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~ 431 (435)
+.|.| ..++|-.|.-.+..+++.||+..+.+.|+..
T Consensus 430 i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 430 IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 45553 3568888999999999999999999999875
No 313
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.66 E-value=1.8 Score=37.75 Aligned_cols=96 Identities=15% Similarity=0.056 Sum_probs=65.2
Q ss_pred CCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHH------HHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCC-CH--H
Q 013843 332 GKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSL------RVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCH-NV--K 402 (435)
Q Consensus 332 g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~------~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~-~~--~ 402 (435)
.+...|-..|.++++.............+....- -....+.+|..+...+++++|+..++.++..-.+ +. -
T Consensus 48 ~q~~~AS~~Y~~~i~~~~ak~~~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l 127 (207)
T COG2976 48 EQAQEASAQYQNAIKAVQAKKPKSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKAL 127 (207)
T ss_pred HHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHH
Confidence 3455788888888887643322111122211111 1233466788899999999999999999966433 33 3
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHH
Q 013843 403 ALYRRAQAYMEIADLILAELDIKKA 427 (435)
Q Consensus 403 a~~~~a~~~~~lg~~~eA~~~~~~a 427 (435)
+-.|+|.++..++++++|+..+...
T Consensus 128 ~~lRLArvq~q~~k~D~AL~~L~t~ 152 (207)
T COG2976 128 AALRLARVQLQQKKADAALKTLDTI 152 (207)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhcc
Confidence 4588999999999999999887643
No 314
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.58 E-value=2.2 Score=36.13 Aligned_cols=86 Identities=14% Similarity=-0.028 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhh
Q 013843 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC 396 (435)
Q Consensus 317 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 396 (435)
....+.+........++.+.+...+...--+.|... .+-.--|..++..++|.+|+..++.+.+.
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~---------------e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFP---------------ELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCch---------------HHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 345666777777888888888888777666666654 33556788899999999999999999888
Q ss_pred CCCCHHHHHHHHHHHHhcccH
Q 013843 397 DCHNVKALYRRAQAYMEIADL 417 (435)
Q Consensus 397 ~p~~~~a~~~~a~~~~~lg~~ 417 (435)
.|..+-+--.++.|+..+++.
T Consensus 74 ~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 74 APGFPYAKALLALCLYALGDP 94 (160)
T ss_pred CCCChHHHHHHHHHHHHcCCh
Confidence 888887767788888888875
No 315
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=92.15 E-value=1.8 Score=31.71 Aligned_cols=36 Identities=19% Similarity=0.067 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcc
Q 013843 315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE 350 (435)
Q Consensus 315 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~ 350 (435)
...+..+...|..+=+.|+|++|+.+|.++++.+-.
T Consensus 3 e~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 3 ERDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 356788889999999999999999999999998643
No 316
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.93 E-value=3.1 Score=41.29 Aligned_cols=101 Identities=21% Similarity=0.079 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHcc-CHHHHHHHHHHH
Q 013843 316 EAAGRKKEEGNLLF-KNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK-DYQGAIELCSKV 393 (435)
Q Consensus 316 ~~a~~~~~~g~~~~-~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~-~~~~A~~~~~~a 393 (435)
-.+..+.+.|..++ -..+++.|..++++|..+....+.+. ..+..++.-+|.||.... .+..|....++|
T Consensus 44 veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fy--------dvKf~a~SlLa~lh~~~~~s~~~~KalLrka 115 (629)
T KOG2300|consen 44 VEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFY--------DVKFQAASLLAHLHHQLAQSFPPAKALLRKA 115 (629)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHH--------hhhhHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 34667777777665 47899999999999999887766552 334566778899998887 799999999999
Q ss_pred HhhCCCCH----HHHHHHHHHHHhcccHHHHHHHH
Q 013843 394 LDCDCHNV----KALYRRAQAYMEIADLILAELDI 424 (435)
Q Consensus 394 l~~~p~~~----~a~~~~a~~~~~lg~~~eA~~~~ 424 (435)
+++...++ +.++.+++.+.-..++..|.+.+
T Consensus 116 ielsq~~p~wsckllfQLaql~~idkD~~sA~elL 150 (629)
T KOG2300|consen 116 IELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELL 150 (629)
T ss_pred HHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHH
Confidence 99987664 67889999999999999998874
No 317
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=91.87 E-value=2.3 Score=40.98 Aligned_cols=108 Identities=20% Similarity=0.122 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHh
Q 013843 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD 395 (435)
Q Consensus 316 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 395 (435)
..+..+...+..+.+.|+++.|...+.++....+..... ...+.+..|..+...|+..+|+...+..+.
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~-----------~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL-----------LPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC-----------CcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455677888999999999999999999988866433211 124467778888899999999998888877
Q ss_pred h--C-C-------------------------------CCHHHHHHHHHHHHhc------ccHHHHHHHHHHHHHhCCCC
Q 013843 396 C--D-C-------------------------------HNVKALYRRAQAYMEI------ADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 396 ~--~-p-------------------------------~~~~a~~~~a~~~~~l------g~~~eA~~~~~~al~l~P~n 434 (435)
. . + ...++++.+|.-...+ +.+++++..|++|.+++|+.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 291 (352)
T PF02259_consen 213 CRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSW 291 (352)
T ss_pred HHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhH
Confidence 1 1 0 0146778888888777 88999999999999999863
No 318
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=91.73 E-value=0.4 Score=48.32 Aligned_cols=93 Identities=16% Similarity=0.060 Sum_probs=81.0
Q ss_pred HHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 013843 328 LFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRR 407 (435)
Q Consensus 328 ~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~ 407 (435)
+-.+|+-.+|+.+|..++.+.+.... -.+++.+|.++.++|.-.+|--.+.-|+.-.|....-+|-+
T Consensus 223 WR~~G~~~~A~~Ca~~a~hf~~~h~k-------------di~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l 289 (886)
T KOG4507|consen 223 WRIKGEPYQAVECAMRALHFSSRHNK-------------DIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTL 289 (886)
T ss_pred HHHcCChhhhhHHHHHHhhhCCcccc-------------cchhhhHHHHHHHcccccchhheeehhccCCccccccceeH
Confidence 34589999999999999998876442 24588899999999999999888888998888877889999
Q ss_pred HHHHHhcccHHHHHHHHHHHHHhCCC
Q 013843 408 AQAYMEIADLILAELDIKKAIEADPQ 433 (435)
Q Consensus 408 a~~~~~lg~~~eA~~~~~~al~l~P~ 433 (435)
+.++..+++|.....+|..+++.+|.
T Consensus 290 ~~i~aml~~~N~S~~~ydha~k~~p~ 315 (886)
T KOG4507|consen 290 GNIYAMLGEYNHSVLCYDHALQARPG 315 (886)
T ss_pred HHHHHHHhhhhhhhhhhhhhhccCcc
Confidence 99999999999999999999998885
No 319
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=91.69 E-value=2.8 Score=33.45 Aligned_cols=75 Identities=16% Similarity=0.139 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhh
Q 013843 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC 396 (435)
Q Consensus 318 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 396 (435)
+-.+--++..+...|+|++++..-.++|.+.....+...++ -++-+.+-+++|..+..+|+.++|+..++.+-++
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qde----GklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDE----GKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTH----HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccccc----chhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 34555677788899999999999999999887655444333 2344667889999999999999999999998764
No 320
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=91.62 E-value=0.3 Score=30.46 Aligned_cols=30 Identities=20% Similarity=0.245 Sum_probs=27.1
Q ss_pred HHHhHHHHHHHHccCHHHHHHHHHHHHhhC
Q 013843 368 SCWLNSAACCLKLKDYQGAIELCSKVLDCD 397 (435)
Q Consensus 368 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 397 (435)
.+|..+|.+.+..++|.+|+.+|.++|++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 458889999999999999999999999874
No 321
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=91.61 E-value=0.26 Score=27.75 Aligned_cols=24 Identities=25% Similarity=0.126 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHH
Q 013843 402 KALYRRAQAYMEIADLILAELDIK 425 (435)
Q Consensus 402 ~a~~~~a~~~~~lg~~~eA~~~~~ 425 (435)
.+++.+|.++..+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 355666677777777777666654
No 322
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=91.52 E-value=2 Score=47.83 Aligned_cols=98 Identities=16% Similarity=0.119 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 013843 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCH 399 (435)
Q Consensus 320 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~ 399 (435)
-+..+...|-+.+++++|.++|+..++...+. ...|...|..+++.++-++|.....+||+.-|.
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~---------------~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFGQT---------------RKVWIMYADFLLRQNEAEAARELLKRALKSLPK 1596 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhcch---------------hhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch
Confidence 45566677777777777777777777765422 133444444444444444444444444444444
Q ss_pred --CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC
Q 013843 400 --NVKALYRRAQAYMEIADLILAELDIKKAIEADP 432 (435)
Q Consensus 400 --~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P 432 (435)
+.+..-..|+.-++.|+-+.++..|+-.|.-.|
T Consensus 1597 ~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayP 1631 (1710)
T KOG1070|consen 1597 QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYP 1631 (1710)
T ss_pred hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCc
Confidence 334444444444444444444444444444433
No 323
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=91.49 E-value=2 Score=32.70 Aligned_cols=75 Identities=13% Similarity=0.036 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHhc
Q 013843 337 AGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN--VKALYRRAQAYMEI 414 (435)
Q Consensus 337 A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~--~~a~~~~a~~~~~l 414 (435)
.+..+++++..+|.+. .+.+.+|.+++..|++++|++.+-.++..++++ -.+--.+=.++..+
T Consensus 7 ~~~al~~~~a~~P~D~---------------~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~l 71 (90)
T PF14561_consen 7 DIAALEAALAANPDDL---------------DARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELL 71 (90)
T ss_dssp HHHHHHHHHHHSTT-H---------------HHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHcCCCCH---------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHc
Confidence 3566788888888764 568899999999999999999999999998876 55656666667777
Q ss_pred ccHHHHHHHHHH
Q 013843 415 ADLILAELDIKK 426 (435)
Q Consensus 415 g~~~eA~~~~~~ 426 (435)
|.-+.-...|++
T Consensus 72 g~~~plv~~~RR 83 (90)
T PF14561_consen 72 GPGDPLVSEYRR 83 (90)
T ss_dssp -TT-HHHHHHHH
T ss_pred CCCChHHHHHHH
Confidence 765444444444
No 324
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=91.33 E-value=0.27 Score=45.68 Aligned_cols=68 Identities=21% Similarity=0.210 Sum_probs=57.5
Q ss_pred HHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHH-HHHHHHhcccHHHHHHHHHHHHHhCCCCC
Q 013843 368 SCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYR-RAQAYMEIADLILAELDIKKAIEADPQNR 435 (435)
Q Consensus 368 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~-~a~~~~~lg~~~eA~~~~~~al~l~P~n~ 435 (435)
.+|...+..-.+.+-|.+.-+.|.++|+.+|.|+..|.. .+.-+...++++.|++.|.++|+++|.++
T Consensus 108 k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p 176 (435)
T COG5191 108 KIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSP 176 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCc
Confidence 335555566667778999999999999999999999876 56667888999999999999999999875
No 325
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=91.07 E-value=1.8 Score=39.90 Aligned_cols=63 Identities=22% Similarity=0.257 Sum_probs=43.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHH
Q 013843 323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVL 394 (435)
Q Consensus 323 ~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 394 (435)
+.|..|+..|+|++|+..|+.++...... ....+...++..+..|+.++++.+..+..+-+.+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~e---------gW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRRE---------GWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhC---------CcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 56777788888888888887776554322 2345566667777778888888777777766554
No 326
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=90.90 E-value=1.9 Score=31.40 Aligned_cols=36 Identities=28% Similarity=0.227 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcc
Q 013843 315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE 350 (435)
Q Consensus 315 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~ 350 (435)
.+.+..+...|..+=+.|+|.+|+.+|+++++.+-.
T Consensus 3 ~~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q 38 (75)
T cd02682 3 EEMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQ 38 (75)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 456788889999999999999999999999987643
No 327
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=90.53 E-value=4.1 Score=39.41 Aligned_cols=98 Identities=16% Similarity=0.063 Sum_probs=73.2
Q ss_pred HHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 013843 328 LFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRR 407 (435)
Q Consensus 328 ~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~ 407 (435)
....|+|+.|+++........-... ......+..++...|...+ .-+...|..+..+++++.|+.+-+-..-
T Consensus 198 r~~~gdWd~AlkLvd~~~~~~vie~-------~~aeR~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL~pdlvPaav~A 269 (531)
T COG3898 198 RCAAGDWDGALKLVDAQRAAKVIEK-------DVAERSRAVLLTAKAMSLL-DADPASARDDALEANKLAPDLVPAAVVA 269 (531)
T ss_pred HHhcCChHHHHHHHHHHHHHHhhch-------hhHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhcCCccchHHHHH
Confidence 5677888888888777665432211 1223334444444544443 3458999999999999999999999999
Q ss_pred HHHHHhcccHHHHHHHHHHHHHhCCC
Q 013843 408 AQAYMEIADLILAELDIKKAIEADPQ 433 (435)
Q Consensus 408 a~~~~~lg~~~eA~~~~~~al~l~P~ 433 (435)
+.+|+..|+..++-..++.+-+.+|+
T Consensus 270 Aralf~d~~~rKg~~ilE~aWK~ePH 295 (531)
T COG3898 270 ARALFRDGNLRKGSKILETAWKAEPH 295 (531)
T ss_pred HHHHHhccchhhhhhHHHHHHhcCCC
Confidence 99999999999999999999998885
No 328
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=90.38 E-value=3.5 Score=38.67 Aligned_cols=87 Identities=23% Similarity=0.239 Sum_probs=66.6
Q ss_pred HHHcCCHHHHHHHHHHHHHHhc-cCCCCChHHHHHHHHHHHHHHhHHHHHHHHcc-CHHHHHHHHHHHHhh----CC---
Q 013843 328 LFKNGKYERAGKKYNKAADCVS-EDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK-DYQGAIELCSKVLDC----DC--- 398 (435)
Q Consensus 328 ~~~~g~y~~A~~~y~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~-~~~~A~~~~~~al~~----~p--- 398 (435)
..++|+++.|..+|.++-.+.+ .++ ...+..+..++|.|...++.+ +++.|+...++|+++ ..
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~--------~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~ 74 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDP--------DMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDK 74 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCc--------HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccc
Confidence 3578999999999999988763 222 123456788999999999999 999999999999987 21
Q ss_pred CC-------HHHHHHHHHHHHhcccHHHHHH
Q 013843 399 HN-------VKALYRRAQAYMEIADLILAEL 422 (435)
Q Consensus 399 ~~-------~~a~~~~a~~~~~lg~~~eA~~ 422 (435)
.. .+.+..++.+|+..+.++...+
T Consensus 75 ~~~~~~elr~~iL~~La~~~l~~~~~~~~~k 105 (278)
T PF08631_consen 75 LSPDGSELRLSILRLLANAYLEWDTYESVEK 105 (278)
T ss_pred cCCcHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 11 3567888999999887654333
No 329
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=90.22 E-value=3.3 Score=40.38 Aligned_cols=69 Identities=20% Similarity=0.123 Sum_probs=58.3
Q ss_pred HHHHhHHHHHHHHccCHHHHHHHHHHHHhh--------------CCC------------C---HHHHHHHHHHHHhcccH
Q 013843 367 VSCWLNSAACCLKLKDYQGAIELCSKVLDC--------------DCH------------N---VKALYRRAQAYMEIADL 417 (435)
Q Consensus 367 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~--------------~p~------------~---~~a~~~~a~~~~~lg~~ 417 (435)
+..++.++.++..+|+++.|-+.+++||-. ++. | -.|+++....+.+.|-+
T Consensus 40 idtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~ 119 (360)
T PF04910_consen 40 IDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCW 119 (360)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcH
Confidence 466899999999999999999999998732 111 1 26788999999999999
Q ss_pred HHHHHHHHHHHHhCCC-CC
Q 013843 418 ILAELDIKKAIEADPQ-NR 435 (435)
Q Consensus 418 ~eA~~~~~~al~l~P~-n~ 435 (435)
.-|+++.+-.+.+||. |+
T Consensus 120 rTAlE~~KlLlsLdp~~DP 138 (360)
T PF04910_consen 120 RTALEWCKLLLSLDPDEDP 138 (360)
T ss_pred HHHHHHHHHHHhcCCCCCc
Confidence 9999999999999998 54
No 330
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=90.19 E-value=3.9 Score=30.02 Aligned_cols=61 Identities=16% Similarity=-0.006 Sum_probs=46.3
Q ss_pred HhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH---HHHHHHHHHhcccHHHHHHHHHHHHHh
Q 013843 370 WLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKA---LYRRAQAYMEIADLILAELDIKKAIEA 430 (435)
Q Consensus 370 ~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a---~~~~a~~~~~lg~~~eA~~~~~~al~l 430 (435)
+...|.-++..++.++|+....++|+..++.... +=.+..+|...|+|.+++++-.+=+.+
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666668889999999999999998776544 444677889999999988776554443
No 331
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.14 E-value=2.3 Score=44.13 Aligned_cols=92 Identities=29% Similarity=0.249 Sum_probs=72.2
Q ss_pred HHHHHHHHHHcC-----CHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHcc---CHHHHHHHHHH
Q 013843 321 KKEEGNLLFKNG-----KYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK---DYQGAIELCSK 392 (435)
Q Consensus 321 ~~~~g~~~~~~g-----~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~---~~~~A~~~~~~ 392 (435)
....|..|++.. ++..|+.+|.++-+.... .+.+++|.||..-. ++.+|.++|..
T Consensus 291 ~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~-----------------~a~~~lg~~~~~g~~~~d~~~A~~yy~~ 353 (552)
T KOG1550|consen 291 QYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNP-----------------DAQYLLGVLYETGTKERDYRRAFEYYSL 353 (552)
T ss_pred ccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCc-----------------hHHHHHHHHHHcCCccccHHHHHHHHHH
Confidence 345777777743 788999999999887533 44778899888755 67899999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHhc----ccHHHHHHHHHHHHHhC
Q 013843 393 VLDCDCHNVKALYRRAQAYMEI----ADLILAELDIKKAIEAD 431 (435)
Q Consensus 393 al~~~p~~~~a~~~~a~~~~~l----g~~~eA~~~~~~al~l~ 431 (435)
|.... +..|.+++|.||..- .+...|..++++|-+..
T Consensus 354 Aa~~G--~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 354 AAKAG--HILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred HHHcC--ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 88774 789999999998732 36788999999998876
No 332
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.03 E-value=1.8 Score=45.90 Aligned_cols=119 Identities=13% Similarity=0.119 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHH-------ccCHHHH-
Q 013843 315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLK-------LKDYQGA- 386 (435)
Q Consensus 315 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-------~~~~~~A- 386 (435)
+.......+.|..+...|+|.+|++.|+.+|-..|-....+.++..+.+++...+.-.+.-...+ .....++
T Consensus 988 l~~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ 1067 (1202)
T KOG0292|consen 988 LSQLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQL 1067 (1202)
T ss_pred HHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHH
Confidence 66677888999999999999999999999998776544334444445555544442222221111 1122333
Q ss_pred -HHHHHHHHhhCCCCHHH-HHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q 013843 387 -IELCSKVLDCDCHNVKA-LYRRAQAYMEIADLILAELDIKKAIEADPQ 433 (435)
Q Consensus 387 -~~~~~~al~~~p~~~~a-~~~~a~~~~~lg~~~eA~~~~~~al~l~P~ 433 (435)
+..|=.-..+.|-+.-. +..--.++++++++..|.....+.|++.|.
T Consensus 1068 ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~ 1116 (1202)
T KOG0292|consen 1068 ELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPS 1116 (1202)
T ss_pred HHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC
Confidence 22222223344433322 222233455666666666666666666653
No 333
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=89.65 E-value=4.9 Score=39.54 Aligned_cols=101 Identities=16% Similarity=0.102 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHH--HccCHHHHHHHHHHHH
Q 013843 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCL--KLKDYQGAIELCSKVL 394 (435)
Q Consensus 317 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~--~~~~~~~A~~~~~~al 394 (435)
.......++..+|..++|..|.+.+...+...+.... ...+.+++.+|. -.-+|.+|.+.+++.+
T Consensus 130 ~~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~-------------~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~ 196 (379)
T PF09670_consen 130 FGDREWRRAKELFNRYDYGAAARILEELLRRLPGREE-------------YQRYKDLCEGYDAWDRFDHKEALEYLEKLL 196 (379)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhh-------------HHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 4466778888999999999999999998875332210 233455555544 4667888888888666
Q ss_pred hhCCC-----------------------------C---------HHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q 013843 395 DCDCH-----------------------------N---------VKALYRRAQAYMEIADLILAELDIKKAIEA 430 (435)
Q Consensus 395 ~~~p~-----------------------------~---------~~a~~~~a~~~~~lg~~~eA~~~~~~al~l 430 (435)
...-. . ..-++.-|.-....|+|+.|...+-+++++
T Consensus 197 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl 270 (379)
T PF09670_consen 197 KRDKALNQEREGLKELVEVLKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALEL 270 (379)
T ss_pred HHhhhhHhHHHHHHHHHHHHHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 43110 0 011333444445678899999999999886
No 334
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=89.50 E-value=2.3 Score=39.13 Aligned_cols=75 Identities=20% Similarity=0.077 Sum_probs=63.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCH
Q 013843 322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNV 401 (435)
Q Consensus 322 ~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~ 401 (435)
.+.=..+...++++.|...-.+.+.++|.++.. ..-+|.+|.+++.+.-|++++...++..|+.+
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~e---------------irDrGliY~ql~c~~vAl~dl~~~~~~~P~~~ 249 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYE---------------IRDRGLIYAQLGCYHVALEDLSYFVEHCPDDP 249 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhh---------------ccCcHHHHHhcCCchhhHHHHHHHHHhCCCch
Confidence 344456788999999999999999999988633 56799999999999999999999999999998
Q ss_pred HHHHHHHHHH
Q 013843 402 KALYRRAQAY 411 (435)
Q Consensus 402 ~a~~~~a~~~ 411 (435)
.+-.-+++..
T Consensus 250 ~a~~ir~~l~ 259 (269)
T COG2912 250 IAEMIRAQLL 259 (269)
T ss_pred HHHHHHHHHH
Confidence 8876665543
No 335
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=89.40 E-value=7.7 Score=37.82 Aligned_cols=100 Identities=15% Similarity=-0.000 Sum_probs=65.9
Q ss_pred HHHHHHHHHHH---cCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHH---------ccCHHHHH
Q 013843 320 RKKEEGNLLFK---NGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLK---------LKDYQGAI 387 (435)
Q Consensus 320 ~~~~~g~~~~~---~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~---------~~~~~~A~ 387 (435)
.....|.++-+ .|+.++|+..+..++....... ...+.-.|.+|.. ....++|+
T Consensus 181 i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~--------------~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi 246 (374)
T PF13281_consen 181 IKFQYAFALNRRNKPGDREKALQILLPVLESDENPD--------------PDTLGLLGRIYKDLFLESNFTDRESLDKAI 246 (374)
T ss_pred HHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCC--------------hHHHHHHHHHHHHHHHHcCccchHHHHHHH
Confidence 34456666777 8999999999999765543221 1223333333221 33478888
Q ss_pred HHHHHHHhhCCCCH---------------------------------------------HHHHHHHHHHHhcccHHHHHH
Q 013843 388 ELCSKVLDCDCHNV---------------------------------------------KALYRRAQAYMEIADLILAEL 422 (435)
Q Consensus 388 ~~~~~al~~~p~~~---------------------------------------------~a~~~~a~~~~~lg~~~eA~~ 422 (435)
..|.++.+++|+.- ..+-.++.+..-.+++++|.+
T Consensus 247 ~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~ 326 (374)
T PF13281_consen 247 EWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQ 326 (374)
T ss_pred HHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHH
Confidence 88888888876531 112335567777889999999
Q ss_pred HHHHHHHhCCC
Q 013843 423 DIKKAIEADPQ 433 (435)
Q Consensus 423 ~~~~al~l~P~ 433 (435)
++++++++.|.
T Consensus 327 a~e~~~~l~~~ 337 (374)
T PF13281_consen 327 AAEKAFKLKPP 337 (374)
T ss_pred HHHHHhhcCCc
Confidence 99999998875
No 336
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=89.22 E-value=8.8 Score=37.25 Aligned_cols=95 Identities=17% Similarity=0.024 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCC
Q 013843 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCH 399 (435)
Q Consensus 320 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~ 399 (435)
.+.-.+....-.|+|+.|.+.|+..+.- |. . +..-+.-+-.--.++|.++.|++|...+-+..|.
T Consensus 122 IhlLeAQaal~eG~~~~Ar~kfeAMl~d-PE---t-----------RllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~ 186 (531)
T COG3898 122 IHLLEAQAALLEGDYEDARKKFEAMLDD-PE---T-----------RLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ 186 (531)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHhcC-hH---H-----------HHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC
Confidence 3444566777889999999999887752 11 1 1111111222334689999999999999999999
Q ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 013843 400 NVKALYRRAQAYMEIADLILAELDIKKAIE 429 (435)
Q Consensus 400 ~~~a~~~~a~~~~~lg~~~eA~~~~~~al~ 429 (435)
-+.++...=......|+|+.|++..+...+
T Consensus 187 l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 187 LPWAARATLEARCAAGDWDGALKLVDAQRA 216 (531)
T ss_pred CchHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 999998888889999999999998876553
No 337
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=89.16 E-value=2.1 Score=30.56 Aligned_cols=35 Identities=20% Similarity=0.217 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Q 013843 315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVS 349 (435)
Q Consensus 315 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~ 349 (435)
++.+..+...|..+=+.|+|++|+.+|.++++.+-
T Consensus 2 ~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~ 36 (69)
T PF04212_consen 2 LDKAIELIKKAVEADEAGNYEEALELYKEAIEYLM 36 (69)
T ss_dssp HHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 45677888999999999999999999999998753
No 338
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=89.16 E-value=3.8 Score=30.12 Aligned_cols=35 Identities=20% Similarity=0.204 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcc
Q 013843 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE 350 (435)
Q Consensus 316 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~ 350 (435)
..+..+...|..+=+.|+|++|+.+|.++|+.+-.
T Consensus 4 ~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~ 38 (77)
T cd02683 4 LAAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQ 38 (77)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 45678888899999999999999999999997643
No 339
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=88.99 E-value=3.3 Score=30.28 Aligned_cols=60 Identities=18% Similarity=0.150 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHHHHhHHH
Q 013843 315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGS-FVDDEQKLVKSLRVSCWLNSA 374 (435)
Q Consensus 315 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~-~~~~~~~~~~~~~~~~~~nla 374 (435)
+..+..+...|...-..|+|++|+.+|.++++.+-.... -.++..+..-..++.-|+.+|
T Consensus 3 l~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~~~k~e~~~~~k~~ir~K~~eYl~RA 63 (75)
T cd02677 3 LEQAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLKGVQGDSSPERREAVKRKIAEYLKRA 63 (75)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence 456788888899999999999999999999997644221 123333444444444455444
No 340
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=88.90 E-value=3.9 Score=29.79 Aligned_cols=35 Identities=20% Similarity=0.174 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Q 013843 315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVS 349 (435)
Q Consensus 315 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~ 349 (435)
++.+..+...|...=..|+|++|+.+|.++++.+-
T Consensus 3 ~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~ 37 (75)
T cd02678 3 LQKAIELVKKAIEEDNAGNYEEALRLYQHALEYFM 37 (75)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 56788889999999999999999999999999764
No 341
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=88.72 E-value=2.9 Score=30.55 Aligned_cols=35 Identities=17% Similarity=-0.018 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Q 013843 315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVS 349 (435)
Q Consensus 315 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~ 349 (435)
++.+..+..+|...-..|+|++|+.+|.++|+.+-
T Consensus 3 l~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~ 37 (75)
T cd02684 3 LEKAIALVVQAVKKDQRGDAAAALSLYCSALQYFV 37 (75)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 56778888999999999999999999999999764
No 342
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.39 E-value=3.8 Score=35.54 Aligned_cols=65 Identities=17% Similarity=0.064 Sum_probs=55.4
Q ss_pred HHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q 013843 366 RVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN---VKALYRRAQAYMEIADLILAELDIKKAIEA 430 (435)
Q Consensus 366 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~---~~a~~~~a~~~~~lg~~~eA~~~~~~al~l 430 (435)
...++..+|.-|.+.|+++.|++.|.++.+..-.. ...++++-.+.+..++|.....++.+|-.+
T Consensus 35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 35 IRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34668899999999999999999999998875432 466788888999999999999999988765
No 343
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=88.28 E-value=7.3 Score=28.76 Aligned_cols=67 Identities=16% Similarity=0.039 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccC------CCCChHHHHHHHHHHHHHHhHHHHHHHHc
Q 013843 314 KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSED------GSFVDDEQKLVKSLRVSCWLNSAACCLKL 380 (435)
Q Consensus 314 ~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~------~~~~~~~~~~~~~~~~~~~~nla~~~~~~ 380 (435)
..+.|....+.|..+-..|+.++|+.+|+++++....- .....++|.....+....-.++..+-.++
T Consensus 4 ~~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~~~~~~~~~w~~ar~~~~Km~~~~~~v~~RL 76 (79)
T cd02679 4 YYKQAFEEISKALRADEWGDKEQALAHYRKGLRELEEGIAVPVPSAGVGSQWERARRLQQKMKTNLNMVKTRL 76 (79)
T ss_pred HHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35677888889999999999999999999999976432 12334667777777776666666655443
No 344
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=87.80 E-value=4.6 Score=36.23 Aligned_cols=68 Identities=15% Similarity=0.022 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCH-HHHHHHHHH
Q 013843 334 YERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNV-KALYRRAQA 410 (435)
Q Consensus 334 y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~-~a~~~~a~~ 410 (435)
+.+|+..|.+|++........ .-...+++-+|..+.++|++++|+.++.+++.....+. ..+..+|.-
T Consensus 141 l~~Al~~y~~a~~~e~~~~~~---------~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR~ 209 (214)
T PF09986_consen 141 LRKALEFYEEAYENEDFPIEG---------MDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMARD 209 (214)
T ss_pred HHHHHHHHHHHHHhCcCCCCC---------chHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHH
Confidence 455666666666554321111 01235678899999999999999999999998753332 355555543
No 345
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=87.72 E-value=3.5 Score=43.58 Aligned_cols=104 Identities=14% Similarity=0.021 Sum_probs=68.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHhccC-----CCCChHHH----HHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHH---
Q 013843 326 NLLFKNGKYERAGKKYNKAADCVSED-----GSFVDDEQ----KLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKV--- 393 (435)
Q Consensus 326 ~~~~~~g~y~~A~~~y~~al~~~~~~-----~~~~~~~~----~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a--- 393 (435)
......|-.++|..+|+++-+.+--+ ....++.. ..-+-.+...|+|.|.-+...++.+.|+++|+++
T Consensus 808 vLAieLgMlEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~h 887 (1416)
T KOG3617|consen 808 VLAIELGMLEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVH 887 (1416)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCCh
Confidence 34556677888888887775532110 00001100 0111223466899999999999999999999875
Q ss_pred -------HhhCCC----------CHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 013843 394 -------LDCDCH----------NVKALYRRAQAYMEIADLILAELDIKKAIE 429 (435)
Q Consensus 394 -------l~~~p~----------~~~a~~~~a~~~~~lg~~~eA~~~~~~al~ 429 (435)
|.-+|. +.+.|-..|+.+...|+.+.|+..|..|-.
T Consensus 888 afev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 888 AFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred HHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence 333443 345566789999999999999999998753
No 346
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=87.56 E-value=7.6 Score=37.92 Aligned_cols=105 Identities=17% Similarity=0.055 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcc-CCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHH
Q 013843 314 KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE-DGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSK 392 (435)
Q Consensus 314 ~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 392 (435)
.-..-..+......+.++|.|..|++..+-.+.++|. |+ ..+++-+-...++.++|+--++.++.
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP--------------~g~ll~ID~~ALrs~~y~~Li~~~~~ 164 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDP--------------LGVLLFIDYYALRSRQYQWLIDFSES 164 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc--------------chhHHHHHHHHHhcCCHHHHHHHHHh
Confidence 3445567777778889999999999999999999998 54 23455666677788999988888887
Q ss_pred HHhhCCC-----CHHHHHHHHHHHHhcccH---------------HHHHHHHHHHHHhCC
Q 013843 393 VLDCDCH-----NVKALYRRAQAYMEIADL---------------ILAELDIKKAIEADP 432 (435)
Q Consensus 393 al~~~p~-----~~~a~~~~a~~~~~lg~~---------------~eA~~~~~~al~l~P 432 (435)
....... -+..-|.+|.|++.+++- ++|...+.+|+..-|
T Consensus 165 ~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 165 PLAKCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred HhhhhhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence 7663221 345678899999999998 899999999998776
No 347
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=87.36 E-value=6.2 Score=41.58 Aligned_cols=108 Identities=15% Similarity=0.035 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCC-------CCC----hHHHHHHHHHHHHHHhHHHHHHHHccCHHHHH
Q 013843 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDG-------SFV----DDEQKLVKSLRVSCWLNSAACCLKLKDYQGAI 387 (435)
Q Consensus 319 ~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~-------~~~----~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~ 387 (435)
-.+.--|......+..++|.+++.++++...... ..+ .+...-...++..+++.++.+.+-+++|..|.
T Consensus 302 L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~ 381 (608)
T PF10345_consen 302 LVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKAT 381 (608)
T ss_pred HHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHH
Confidence 3444447777777888899999999998765433 111 13345566777788889999999999999999
Q ss_pred HHHHHHHhhC---CC------CHHHHHHHHHHHHhcccHHHHHHHHHH
Q 013843 388 ELCSKVLDCD---CH------NVKALYRRAQAYMEIADLILAELDIKK 426 (435)
Q Consensus 388 ~~~~~al~~~---p~------~~~a~~~~a~~~~~lg~~~eA~~~~~~ 426 (435)
.....+.... |. .+..+|..|..+...|+.+.|+..|.+
T Consensus 382 ~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~ 429 (608)
T PF10345_consen 382 QELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQK 429 (608)
T ss_pred HHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhh
Confidence 9988877653 22 477899999999999999999999983
No 348
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=87.22 E-value=3.1 Score=43.94 Aligned_cols=112 Identities=17% Similarity=0.094 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------HhccCCCCChHHHHHHHHH-HHHHHhHHHHHHHHccCHHHHH
Q 013843 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAAD-------CVSEDGSFVDDEQKLVKSL-RVSCWLNSAACCLKLKDYQGAI 387 (435)
Q Consensus 316 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~-------~~~~~~~~~~~~~~~~~~~-~~~~~~nla~~~~~~~~~~~A~ 387 (435)
..-..+++.|..+-.+++...|+++|+++-. ++..++.. -..-++.. -..+|.--|+.....|+.+.|+
T Consensus 856 HLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~---~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl 932 (1416)
T KOG3617|consen 856 HLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQ---IEQYVRRKRDESLYSWWGQYLESVGEMDAAL 932 (1416)
T ss_pred ehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHH---HHHHHHhccchHHHHHHHHHHhcccchHHHH
Confidence 3334566677777777888888888877521 11111100 00000000 1134555577777788888888
Q ss_pred HHHHHHHhh---------------------CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q 013843 388 ELCSKVLDC---------------------DCHNVKALYRRAQAYMEIADLILAELDIKKAIEA 430 (435)
Q Consensus 388 ~~~~~al~~---------------------~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l 430 (435)
.+|..|-.. ...+..|.|.+|.-|...|++.+|...|.+|-.+
T Consensus 933 ~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf 996 (1416)
T KOG3617|consen 933 SFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAF 996 (1416)
T ss_pred HHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 888887543 3345678999999999999999999999887654
No 349
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=87.05 E-value=6.6 Score=40.00 Aligned_cols=96 Identities=15% Similarity=-0.047 Sum_probs=71.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCH-HHHHHHHHHHHhhCCCCHH
Q 013843 324 EGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDY-QGAIELCSKVLDCDCHNVK 402 (435)
Q Consensus 324 ~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~-~~A~~~~~~al~~~p~~~~ 402 (435)
....+...+....|......++..++.. ..++.|++.+....+.. ..+...+..+....|+|..
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~---------------~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~ 137 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSVNPEN---------------CPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAE 137 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhcCccc---------------chHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHH
Confidence 3444455566666777777777766654 36688898887776664 4455566669999999987
Q ss_pred HHHHH------HHHHHhcccHHHHHHHHHHHHHhCCCC
Q 013843 403 ALYRR------AQAYMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 403 a~~~~------a~~~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
....+ +..+..+++..++...+.++..+.|.+
T Consensus 138 ~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~ 175 (620)
T COG3914 138 FLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKY 175 (620)
T ss_pred HHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhh
Confidence 76666 888889999999999999999999876
No 350
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=86.92 E-value=6.9 Score=28.55 Aligned_cols=36 Identities=19% Similarity=0.076 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcc
Q 013843 315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE 350 (435)
Q Consensus 315 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~ 350 (435)
++.+..+..+|...=..|+|++|+.+|.+|++.+-.
T Consensus 3 l~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 3 LERAHFLVTQAFDEDEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence 356778888889999999999999999999998754
No 351
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.86 E-value=14 Score=30.94 Aligned_cols=84 Identities=10% Similarity=-0.072 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 013843 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDC 398 (435)
Q Consensus 319 ~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p 398 (435)
..+.+.........+.+.+.......--+.|...+. ..--+..++..++|.+|+..++.+.+-.+
T Consensus 11 ~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~---------------d~~dg~l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 11 GGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKEL---------------DMFDGWLLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcccc---------------chhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence 344444555555778888777766655555665543 45667888999999999999999998888
Q ss_pred CCHHHHHHHHHHHHhcccH
Q 013843 399 HNVKALYRRAQAYMEIADL 417 (435)
Q Consensus 399 ~~~~a~~~~a~~~~~lg~~ 417 (435)
..+-+--.++.|+..+|+.
T Consensus 76 ~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 76 APPYGKALLALCLNAKGDA 94 (153)
T ss_pred CchHHHHHHHHHHHhcCCh
Confidence 7776666788888888874
No 352
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=86.75 E-value=1.2 Score=28.76 Aligned_cols=25 Identities=36% Similarity=0.417 Sum_probs=19.7
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHH
Q 013843 405 YRRAQAYMEIADLILAELDIKKAIE 429 (435)
Q Consensus 405 ~~~a~~~~~lg~~~eA~~~~~~al~ 429 (435)
+.+|.+|..+|+++.|+..++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5678888888888888888887774
No 353
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=86.67 E-value=2.4 Score=26.03 Aligned_cols=31 Identities=19% Similarity=0.110 Sum_probs=24.8
Q ss_pred HhHHHHHHHHccCHHHHHHH--HHHHHhhCCCC
Q 013843 370 WLNSAACCLKLKDYQGAIEL--CSKVLDCDCHN 400 (435)
Q Consensus 370 ~~nla~~~~~~~~~~~A~~~--~~~al~~~p~~ 400 (435)
+..+|.++..+|+|++|++. |.-+..+++.|
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 56789999999999999999 55888888764
No 354
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=86.20 E-value=5.9 Score=28.78 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcc
Q 013843 315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE 350 (435)
Q Consensus 315 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~ 350 (435)
++.+..+...|...=..|+|++|+.+|.+|++.+-.
T Consensus 3 ~~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~ 38 (75)
T cd02656 3 LQQAKELIKQAVKEDEDGNYEEALELYKEALDYLLQ 38 (75)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 456777888888888999999999999999997643
No 355
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=86.11 E-value=9.6 Score=35.01 Aligned_cols=85 Identities=15% Similarity=0.105 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCC------CHHHHHHHH
Q 013843 335 ERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCH------NVKALYRRA 408 (435)
Q Consensus 335 ~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~------~~~a~~~~a 408 (435)
...+.++.+|++....... ..+...+...+|.-|++.|+|++|+.+++.+...--. ....+..+.
T Consensus 155 ~~iI~lL~~A~~~f~~~~~---------~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~ 225 (247)
T PF11817_consen 155 KLIIELLEKAYEQFKKYGQ---------NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLL 225 (247)
T ss_pred HHHHHHHHHHHHHHHHhcc---------chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 3456666666665543321 2344556778999999999999999999999755321 247788899
Q ss_pred HHHHhcccHHHHHHHHHHHH
Q 013843 409 QAYMEIADLILAELDIKKAI 428 (435)
Q Consensus 409 ~~~~~lg~~~eA~~~~~~al 428 (435)
.|...+|+.+..+...-+.+
T Consensus 226 ~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 226 ECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHhCCHHHHHHHHHHHh
Confidence 99999999998877655443
No 356
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=85.88 E-value=3 Score=34.66 Aligned_cols=52 Identities=27% Similarity=0.179 Sum_probs=43.1
Q ss_pred HHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHH
Q 013843 368 SCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLIL 419 (435)
Q Consensus 368 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~e 419 (435)
...+.+|...+..|+|.-|.+.++.++..+|+|..+...++.+|.+++.-.+
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 3467788888999999999999999999999999999999999999987544
No 357
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=85.75 E-value=1 Score=25.26 Aligned_cols=24 Identities=25% Similarity=0.087 Sum_probs=21.1
Q ss_pred HHHhHHHHHHHHccCHHHHHHHHH
Q 013843 368 SCWLNSAACCLKLKDYQGAIELCS 391 (435)
Q Consensus 368 ~~~~nla~~~~~~~~~~~A~~~~~ 391 (435)
.+++++|..+..+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 357899999999999999998875
No 358
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=85.60 E-value=11 Score=36.82 Aligned_cols=65 Identities=18% Similarity=0.125 Sum_probs=51.4
Q ss_pred HHhHHHHHHHH---ccCHHHHHHHHHHHH-hhCCCCHHHHHHHHHHHHhcc---------cHHHHHHHHHHHHHhCCC
Q 013843 369 CWLNSAACCLK---LKDYQGAIELCSKVL-DCDCHNVKALYRRAQAYMEIA---------DLILAELDIKKAIEADPQ 433 (435)
Q Consensus 369 ~~~nla~~~~~---~~~~~~A~~~~~~al-~~~p~~~~a~~~~a~~~~~lg---------~~~eA~~~~~~al~l~P~ 433 (435)
+....|.++.+ .|+.++|+..+..++ ...+.++..+..+|.+|..+- ..++|+.+|.++.+++|+
T Consensus 181 i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~ 258 (374)
T PF13281_consen 181 IKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD 258 (374)
T ss_pred HHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc
Confidence 34456666666 999999999999955 456678888988898886542 368899999999999975
No 359
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=85.59 E-value=14 Score=34.56 Aligned_cols=96 Identities=23% Similarity=0.077 Sum_probs=69.4
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHc-----c--CHHHHHH
Q 013843 320 RKKEEGNLLFK----NGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKL-----K--DYQGAIE 388 (435)
Q Consensus 320 ~~~~~g~~~~~----~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~-----~--~~~~A~~ 388 (435)
.....|..+.. ..++.+|...|++|.+.-.... ..+.++++.+|..- - +...|+.
T Consensus 111 a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a--------------~~~~~~l~~~~~~g~~~~~~~~~~~~A~~ 176 (292)
T COG0790 111 ALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA--------------ALAMYRLGLAYLSGLQALAVAYDDKKALY 176 (292)
T ss_pred HHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH--------------HHHHHHHHHHHHcChhhhcccHHHHhHHH
Confidence 45556666665 4589999999999998743211 23356677776653 1 2347888
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHh----cccHHHHHHHHHHHHHhC
Q 013843 389 LCSKVLDCDCHNVKALYRRAQAYME----IADLILAELDIKKAIEAD 431 (435)
Q Consensus 389 ~~~~al~~~p~~~~a~~~~a~~~~~----lg~~~eA~~~~~~al~l~ 431 (435)
.+.++-... ++.+.+++|.+|.. ..++.+|..+|.+|-+..
T Consensus 177 ~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 177 LYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred HHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC
Confidence 898888876 88999999988864 337899999999988754
No 360
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=85.37 E-value=4 Score=37.90 Aligned_cols=62 Identities=16% Similarity=0.086 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 013843 337 AGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYME 413 (435)
Q Consensus 337 A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~ 413 (435)
|..+|.+|+.+.|... ..|+.+|..+...++.-.|+-+|-+++......+.|.-++...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G---------------~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNG---------------NPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBS---------------HHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCC---------------CcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 7889999999999886 4599999999999999999999999998766678888888877777
No 361
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.37 E-value=4.7 Score=34.11 Aligned_cols=67 Identities=15% Similarity=-0.031 Sum_probs=58.6
Q ss_pred HHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q 013843 367 VSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQ 433 (435)
Q Consensus 367 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~ 433 (435)
...+..+..+-++.++.+.+...+.-.--+.|..+..-..-|..+...|+|.+|+..|+.+..-.|.
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~ 76 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPG 76 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC
Confidence 4556777778888899999999888888899999999999999999999999999999998766554
No 362
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=84.88 E-value=5.1 Score=37.51 Aligned_cols=37 Identities=16% Similarity=0.058 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 013843 312 QGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCV 348 (435)
Q Consensus 312 ~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~ 348 (435)
...++.+..+...|...-+.++|.+|+.+|+.|+++.
T Consensus 4 ~~~l~kaI~lv~kA~~eD~a~nY~eA~~lY~~aleYF 40 (439)
T KOG0739|consen 4 GSFLQKAIDLVKKAIDEDNAKNYEEALRLYQNALEYF 40 (439)
T ss_pred chHHHHHHHHHHHHhhhcchhchHHHHHHHHHHHHHH
Confidence 3467788888888888889999999999999999865
No 363
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=84.47 E-value=7.1 Score=34.37 Aligned_cols=54 Identities=19% Similarity=0.150 Sum_probs=45.0
Q ss_pred HHHhHHHHHHHHccCHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHhcccHHHHHH
Q 013843 368 SCWLNSAACCLKLKDYQGAIELCSKVLDCDCH----NVKALYRRAQAYMEIADLILAEL 422 (435)
Q Consensus 368 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~----~~~a~~~~a~~~~~lg~~~eA~~ 422 (435)
.+.+.+|..|. ..+.++|+..+.++|++.+. |+..+..+|.+++.+++++.|.-
T Consensus 142 elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AYi 199 (203)
T PF11207_consen 142 ELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAYI 199 (203)
T ss_pred HHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhhh
Confidence 44667776666 57889999999999998543 58999999999999999999864
No 364
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=84.44 E-value=13 Score=27.07 Aligned_cols=37 Identities=24% Similarity=0.226 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcc
Q 013843 314 KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE 350 (435)
Q Consensus 314 ~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~ 350 (435)
.+..+..+...|..+=..|+|++|+.+|.++++.+-.
T Consensus 4 ~~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~ 40 (77)
T smart00745 4 YLSKAKELISKALKADEAGDYEEALELYKKAIEYLLE 40 (77)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3566778888999999999999999999999997643
No 365
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=84.22 E-value=9.4 Score=35.05 Aligned_cols=91 Identities=15% Similarity=0.123 Sum_probs=55.8
Q ss_pred HHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHH-ccCHHHHHHHHHHHHhhCCCCHHHHHH
Q 013843 328 LFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLK-LKDYQGAIELCSKVLDCDCHNVKALYR 406 (435)
Q Consensus 328 ~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-~~~~~~A~~~~~~al~~~p~~~~a~~~ 406 (435)
+++...-.+|+++-..+|.++|.+... +..+=.|... +.+..+-+++.+.+++-+|+|-..|..
T Consensus 53 ~~~~E~S~RAl~LT~d~i~lNpAnYTV---------------W~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHH 117 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRLNPANYTV---------------WQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHH 117 (318)
T ss_pred HhccccCHHHHHHHHHHHHhCcccchH---------------HHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHH
Confidence 345567788999999999999876532 2222223222 223555566666666666666666666
Q ss_pred HHHHHHhcccHH-HHHHHHHHHHHhCCC
Q 013843 407 RAQAYMEIADLI-LAELDIKKAIEADPQ 433 (435)
Q Consensus 407 ~a~~~~~lg~~~-eA~~~~~~al~l~P~ 433 (435)
|-.+...+|+.. .-++..+.++..|..
T Consensus 118 Rr~ive~l~d~s~rELef~~~~l~~DaK 145 (318)
T KOG0530|consen 118 RRVIVELLGDPSFRELEFTKLMLDDDAK 145 (318)
T ss_pred HHHHHHHhcCcccchHHHHHHHHhcccc
Confidence 666666666655 555666666655443
No 366
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=83.80 E-value=3.7 Score=38.23 Aligned_cols=55 Identities=18% Similarity=0.170 Sum_probs=49.1
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHH
Q 013843 372 NSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKK 426 (435)
Q Consensus 372 nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~ 426 (435)
.-+.-....+++.+|...+..++..+|.+..+...++.||...|+.+.|...|..
T Consensus 139 ~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~ 193 (304)
T COG3118 139 AEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA 193 (304)
T ss_pred HHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence 4455667789999999999999999999999999999999999999999887754
No 367
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=83.71 E-value=24 Score=37.16 Aligned_cols=106 Identities=13% Similarity=0.108 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHH
Q 013843 316 EAAGRKKEEGNLLF-KNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVL 394 (435)
Q Consensus 316 ~~a~~~~~~g~~~~-~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 394 (435)
..+....+.|..++ .-.+++.|..+..+++.+... ..+ .+++..+.+-++.++.+.+... |+..+++++
T Consensus 57 ~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~~~--------~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I 126 (608)
T PF10345_consen 57 QEARVRLRLASILLEETENLDLAETYLEKAILLCER-HRL--------TDLKFRCQFLLARIYFKTNPKA-ALKNLDKAI 126 (608)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-cch--------HHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHH
Confidence 45788888999988 568999999999999998866 332 3445566667788998888777 999999999
Q ss_pred hhCCC----CHHHHHHHHHH--HHhcccHHHHHHHHHHHHHhC
Q 013843 395 DCDCH----NVKALYRRAQA--YMEIADLILAELDIKKAIEAD 431 (435)
Q Consensus 395 ~~~p~----~~~a~~~~a~~--~~~lg~~~eA~~~~~~al~l~ 431 (435)
+.-.. ...-.|++-.+ ++..+++..|++.++....+.
T Consensus 127 ~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a 169 (608)
T PF10345_consen 127 EDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLA 169 (608)
T ss_pred HHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh
Confidence 87544 23334444433 222369999999999887765
No 368
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.14 E-value=29 Score=35.53 Aligned_cols=88 Identities=13% Similarity=0.087 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh--ccCCCCC-hHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHH
Q 013843 313 GKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCV--SEDGSFV-DDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIEL 389 (435)
Q Consensus 313 ~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~--~~~~~~~-~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~ 389 (435)
..++.+...+..|..-...+-.++|+-.+.+|+.-. +...... +--..+.+.+...+ +.--....+.|-|.-|.++
T Consensus 286 sLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l-~r~m~~l~~RGC~rTA~E~ 364 (665)
T KOG2422|consen 286 SLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLAL-FRYMQSLAQRGCWRTALEW 364 (665)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHH-HHHHHHHHhcCChHHHHHH
Confidence 345555555555555555555555666666665521 1100000 00001122222222 2223445678999999999
Q ss_pred HHHHHhhCCC-CH
Q 013843 390 CSKVLDCDCH-NV 401 (435)
Q Consensus 390 ~~~al~~~p~-~~ 401 (435)
|+-.+.++|. ++
T Consensus 365 cKlllsLdp~eDP 377 (665)
T KOG2422|consen 365 CKLLLSLDPSEDP 377 (665)
T ss_pred HHHHhhcCCcCCc
Confidence 9999999998 54
No 369
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=82.77 E-value=2.4 Score=41.67 Aligned_cols=59 Identities=15% Similarity=0.206 Sum_probs=45.8
Q ss_pred HhHHHHHHHHccCHHHHHHHHHHHHhhC---------CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 013843 370 WLNSAACCLKLKDYQGAIELCSKVLDCD---------CHNVKALYRRAQAYMEIADLILAELDIKKAIE 429 (435)
Q Consensus 370 ~~nla~~~~~~~~~~~A~~~~~~al~~~---------p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~ 429 (435)
+.-+.++|.-+|+|..|++..+-. +++ +-+...+|..|.||+.+++|.+|++.|..+|-
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556788899999999875542 222 33567799999999999999999999998874
No 370
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.50 E-value=13 Score=38.71 Aligned_cols=100 Identities=19% Similarity=0.086 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHc----c-CHHHHH
Q 013843 318 AGRKKEEGNLLFK-----NGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKL----K-DYQGAI 387 (435)
Q Consensus 318 a~~~~~~g~~~~~-----~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~----~-~~~~A~ 387 (435)
+......|..++. ..+.+.|+..|..+.+-... ........+.+.+|.||.+. . ++..|+
T Consensus 244 ~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~----------~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~ 313 (552)
T KOG1550|consen 244 SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKK----------AATKGLPPAQYGLGRLYLQGLGVEKIDYEKAL 313 (552)
T ss_pred hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHH----------HHhhcCCccccHHHHHHhcCCCCccccHHHHH
Confidence 3444455555553 35899999999999872000 00000123477899999984 3 788999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHhcc---cHHHHHHHHHHHHH
Q 013843 388 ELCSKVLDCDCHNVKALYRRAQAYMEIA---DLILAELDIKKAIE 429 (435)
Q Consensus 388 ~~~~~al~~~p~~~~a~~~~a~~~~~lg---~~~eA~~~~~~al~ 429 (435)
.++.++-.+. ++.+.|++|.++..-. ++..|..+|..|.+
T Consensus 314 ~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~ 356 (552)
T KOG1550|consen 314 KLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAK 356 (552)
T ss_pred HHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHH
Confidence 9999998885 7889999999998665 57899999998864
No 371
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=82.30 E-value=33 Score=36.97 Aligned_cols=110 Identities=15% Similarity=-0.033 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHH
Q 013843 315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVL 394 (435)
Q Consensus 315 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 394 (435)
.....-....+=......+|.+|-....++....+...... ...+.+...--+|.+....+++++|.+.++.++
T Consensus 412 ~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~------~~~l~ae~~aL~a~val~~~~~e~a~~lar~al 485 (894)
T COG2909 412 ASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSR------QGDLLAEFQALRAQVALNRGDPEEAEDLARLAL 485 (894)
T ss_pred hhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccc------hhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 33444445556667788999999988888877766532211 122333444455677777899999999999999
Q ss_pred hhCCCC-----HHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q 013843 395 DCDCHN-----VKALYRRAQAYMEIADLILAELDIKKAIEA 430 (435)
Q Consensus 395 ~~~p~~-----~~a~~~~a~~~~~lg~~~eA~~~~~~al~l 430 (435)
..-|.+ .-++...|.+.+-.|++++|+.+...+.++
T Consensus 486 ~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 486 VQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQM 526 (894)
T ss_pred HhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHH
Confidence 987765 466788899999999999999999988876
No 372
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=82.10 E-value=6.5 Score=43.74 Aligned_cols=108 Identities=13% Similarity=0.044 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhh
Q 013843 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC 396 (435)
Q Consensus 317 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 396 (435)
.+..+..++..+.+.+++++|+..-.+|.-+.......+.. .....|.|++...+..++...|+..+.+++.+
T Consensus 972 ~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~-------~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l 1044 (1236)
T KOG1839|consen 972 VASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSP-------NTKLAYGNLALYEFAVKNLSGALKSLNRALKL 1044 (1236)
T ss_pred HHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCH-------HHHHHhhHHHHHHHhccCccchhhhHHHHHHh
Confidence 45566778888999999999999888887665443222211 12455889999888889999999999998876
Q ss_pred --------CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Q 013843 397 --------DCHNVKALYRRAQAYMEIADLILAELDIKKAIEAD 431 (435)
Q Consensus 397 --------~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~ 431 (435)
.|.-+-...+++..+..+++++.|+++++.|+.+.
T Consensus 1045 ~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1045 KLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred hccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 34445566788888999999999999999998754
No 373
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=81.02 E-value=11 Score=27.40 Aligned_cols=42 Identities=14% Similarity=-0.015 Sum_probs=23.9
Q ss_pred HhHHHHHHHHccCHHHHHHHHHHH-------HhhCCCCHHHHHHHHHHH
Q 013843 370 WLNSAACCLKLKDYQGAIELCSKV-------LDCDCHNVKALYRRAQAY 411 (435)
Q Consensus 370 ~~nla~~~~~~~~~~~A~~~~~~a-------l~~~p~~~~a~~~~a~~~ 411 (435)
+..+|.-+-+.|++.+|+.+|+++ +...|++++....+..+.
T Consensus 9 ~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~ 57 (75)
T cd02682 9 YAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMIN 57 (75)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 445555555566666555555555 455788876554444433
No 374
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=80.60 E-value=8.6 Score=40.04 Aligned_cols=85 Identities=12% Similarity=0.010 Sum_probs=53.7
Q ss_pred HHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHH--------------
Q 013843 329 FKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVL-------------- 394 (435)
Q Consensus 329 ~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al-------------- 394 (435)
.+.|+|-.-.++|+..-.-.. + +.+-.++.|+|..+..+.+|++|.++|.+.-
T Consensus 771 ~klgDwfrV~qL~r~g~~d~d-D------------~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~ 837 (1189)
T KOG2041|consen 771 KKLGDWFRVYQLIRNGGSDDD-D------------EGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLEL 837 (1189)
T ss_pred HhhhhHHHHHHHHHccCCCcc-h------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHh
Confidence 456777777766655322110 0 1233456666666666666666666665431
Q ss_pred --------hhCCCCHHHHHHHHHHHHhcccHHHHHHHHHH
Q 013843 395 --------DCDCHNVKALYRRAQAYMEIADLILAELDIKK 426 (435)
Q Consensus 395 --------~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~ 426 (435)
..-|++.+.+=.+|..+...|.-++|.+.|.+
T Consensus 838 f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 838 FGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred hhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 22477777777888888888988888888765
No 375
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=80.47 E-value=15 Score=35.24 Aligned_cols=52 Identities=8% Similarity=0.051 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 013843 383 YQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 383 ~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
.+.-+..+++||+.+|++.+.+..+=.+..++.+-++..+-+++++..+|++
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~ 98 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGS 98 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC
Confidence 5667888999999999999998888888888889999999999999998875
No 376
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=80.34 E-value=33 Score=33.58 Aligned_cols=99 Identities=14% Similarity=0.016 Sum_probs=63.6
Q ss_pred HHHcCCHHH-HHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHH-----HHHHccCHHHHHHHHHHHHhhCCCCH
Q 013843 328 LFKNGKYER-AGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAA-----CCLKLKDYQGAIELCSKVLDCDCHNV 401 (435)
Q Consensus 328 ~~~~g~y~~-A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~-----~~~~~~~~~~A~~~~~~al~~~p~~~ 401 (435)
.-..+.|+. +++.=.+.+..+|.... .+..+..++.++.. -..+..-+++-+.+...+|+.+|+.-
T Consensus 38 ~r~~~~yd~e~l~lt~~ll~~npe~~t--------~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY 109 (421)
T KOG0529|consen 38 KREAKEYDEEHLELTSELLEKNPEFYT--------VWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSY 109 (421)
T ss_pred HHhccccchHHHHHHHHHHhhCchhhh--------hhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhH
Confidence 334555554 44555555555544322 22333333333322 33444467777888888999999999
Q ss_pred HHHHHHHHHHHhcc--cHHHHHHHHHHHHHhCCCC
Q 013843 402 KALYRRAQAYMEIA--DLILAELDIKKAIEADPQN 434 (435)
Q Consensus 402 ~a~~~~a~~~~~lg--~~~eA~~~~~~al~l~P~n 434 (435)
-+|+.|..++.+.. ++..-++.++++|+.||.|
T Consensus 110 ~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RN 144 (421)
T KOG0529|consen 110 GAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRN 144 (421)
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCccc
Confidence 99999998888665 4688888899999998865
No 377
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=80.27 E-value=15 Score=30.05 Aligned_cols=60 Identities=20% Similarity=0.152 Sum_probs=38.0
Q ss_pred HhHHHHHHH-HccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 013843 370 WLNSAACCL-KLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIE 429 (435)
Q Consensus 370 ~~nla~~~~-~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~ 429 (435)
|.++|.-++ +.++-++--+.+....+-+..++..++.+|.||.++|+..+|-+.+++|.+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 556665444 344444434444444444556899999999999999999999999999875
No 378
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=80.08 E-value=14 Score=36.86 Aligned_cols=27 Identities=15% Similarity=0.108 Sum_probs=17.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHhccCC
Q 013843 326 NLLFKNGKYERAGKKYNKAADCVSEDG 352 (435)
Q Consensus 326 ~~~~~~g~y~~A~~~y~~al~~~~~~~ 352 (435)
......|+.-.|-+....+|+-.|.++
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~~~~~p 323 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRNQQQDP 323 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHhCCCCc
Confidence 344556777777777777777666555
No 379
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=79.43 E-value=3.5 Score=26.60 Aligned_cols=27 Identities=30% Similarity=0.427 Sum_probs=24.5
Q ss_pred HhHHHHHHHHccCHHHHHHHHHHHHhh
Q 013843 370 WLNSAACCLKLKDYQGAIELCSKVLDC 396 (435)
Q Consensus 370 ~~nla~~~~~~~~~~~A~~~~~~al~~ 396 (435)
.+++|..|.++|+++.|....++++.-
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 368999999999999999999999953
No 380
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=79.29 E-value=8.8 Score=30.28 Aligned_cols=61 Identities=13% Similarity=0.162 Sum_probs=47.4
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHhccc-----------HHHHHHHHHHHHHhCCC
Q 013843 373 SAACCLKLKDYQGAIELCSKVLDCDCHNVK---ALYRRAQAYMEIAD-----------LILAELDIKKAIEADPQ 433 (435)
Q Consensus 373 la~~~~~~~~~~~A~~~~~~al~~~p~~~~---a~~~~a~~~~~lg~-----------~~eA~~~~~~al~l~P~ 433 (435)
+|.-++..|++-+|++..+..+..++++.. .+...|.++..+.. .-.|+++|.++..+.|.
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~ 76 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPD 76 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChh
Confidence 577889999999999999999998887763 45556777766654 34578888888888774
No 381
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=79.08 E-value=17 Score=37.73 Aligned_cols=105 Identities=15% Similarity=0.031 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHH
Q 013843 315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVL 394 (435)
Q Consensus 315 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 394 (435)
+...+-..+-|..+-...-|++|.+.|++.+.+.+....+ . .-..|+......+.-.+.+.|...|++||
T Consensus 508 iaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~------d----iW~tYLtkfi~rygg~klEraRdLFEqaL 577 (835)
T KOG2047|consen 508 IATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVY------D----IWNTYLTKFIKRYGGTKLERARDLFEQAL 577 (835)
T ss_pred cCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHH------H----HHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 3344455566777777778899999999999987653321 1 12335555555566667899999999999
Q ss_pred hhCCC-CHHHHHHH-HHHHHhcccHHHHHHHHHHHHH
Q 013843 395 DCDCH-NVKALYRR-AQAYMEIADLILAELDIKKAIE 429 (435)
Q Consensus 395 ~~~p~-~~~a~~~~-a~~~~~lg~~~eA~~~~~~al~ 429 (435)
+..|. ++|.+|.+ |..-..-|--..|++.|++|-.
T Consensus 578 ~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 578 DGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred hcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 98763 44554443 4555556777778888877643
No 382
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=78.77 E-value=13 Score=36.76 Aligned_cols=60 Identities=17% Similarity=0.220 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHH
Q 013843 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSK 392 (435)
Q Consensus 317 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 392 (435)
......+.|..+|.+|+|.++...-.-..++.|. ..+|.-+|.|.+..++|.+|..++..
T Consensus 461 eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS----------------~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 461 EIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPS----------------PQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCc----------------HHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 3566778889999999999998877777777763 35688899999999999999987654
No 383
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=78.71 E-value=12 Score=34.86 Aligned_cols=66 Identities=11% Similarity=0.050 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHh
Q 013843 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD 395 (435)
Q Consensus 316 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 395 (435)
..+..+.+.+..+...++++.++..+++.+...|.+. .+|..+-..|++.|+...|+..|++.-.
T Consensus 151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E---------------~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 151 LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDE---------------PAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccch---------------HHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3456777888999999999999999999999988775 4577888899999999999999998866
Q ss_pred h
Q 013843 396 C 396 (435)
Q Consensus 396 ~ 396 (435)
.
T Consensus 216 ~ 216 (280)
T COG3629 216 T 216 (280)
T ss_pred H
Confidence 4
No 384
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=78.27 E-value=8.2 Score=33.85 Aligned_cols=51 Identities=20% Similarity=0.131 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 013843 383 YQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 383 ~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
....++..++.++..| ++..+.+++.++..+|+.++|.+...++..+-|.+
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPAD 177 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence 4555666777788887 88999999999999999999999999999998853
No 385
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=78.20 E-value=7.1 Score=34.39 Aligned_cols=60 Identities=18% Similarity=0.127 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHH
Q 013843 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIE 388 (435)
Q Consensus 317 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~ 388 (435)
.++-....|..| ...+-++|+.+|.++|++.+.+..++ ..++..+|..|.++++++.|.-
T Consensus 140 t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n-----------~eil~sLas~~~~~~~~e~AYi 199 (203)
T PF11207_consen 140 TAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFN-----------PEILKSLASIYQKLKNYEQAYI 199 (203)
T ss_pred CHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCC-----------HHHHHHHHHHHHHhcchhhhhh
Confidence 344455555544 57899999999999999987765443 4678999999999999999864
No 386
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=77.27 E-value=30 Score=36.01 Aligned_cols=114 Identities=11% Similarity=0.078 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCC---CCh-HHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHH
Q 013843 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGS---FVD-DEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCS 391 (435)
Q Consensus 316 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~---~~~-~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~ 391 (435)
+.+..+.+-|..-++..+++.|+++.+.|...- ..+. +++ +-.+........++...+..-...|-++.....|+
T Consensus 423 dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP-~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYd 501 (835)
T KOG2047|consen 423 DLAEVWCAWAEMELRHENFEAALKLMRRATHVP-TNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYD 501 (835)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCC-CchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 446667777777888899999999999988652 2211 110 00111111112233444444444555555555555
Q ss_pred HHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q 013843 392 KVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEA 430 (435)
Q Consensus 392 ~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l 430 (435)
+++.+.--.+..-.+.|..+.....+++|.+.|++.+.|
T Consensus 502 riidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~L 540 (835)
T KOG2047|consen 502 RIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISL 540 (835)
T ss_pred HHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCcc
Confidence 555554444444444444444444444444444444433
No 387
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=77.26 E-value=8.1 Score=34.48 Aligned_cols=59 Identities=19% Similarity=0.060 Sum_probs=50.7
Q ss_pred HHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 013843 376 CCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 376 ~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
-+++.+...+|+...+.-++.+|.+...-..+-+.|.-.|+|++|...++-+-+++|++
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 45677888999999999999999988877777788888999999999999999998875
No 388
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=77.12 E-value=16 Score=34.26 Aligned_cols=78 Identities=22% Similarity=0.040 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHH----ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 013843 335 ERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLK----LKDYQGAIELCSKVLDCDCHNVKALYRRAQA 410 (435)
Q Consensus 335 ~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~----~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~ 410 (435)
..|+..|.++.... ...+.+++|.+|.. ..++.+|+.+|.+|-+... ..++++++ +
T Consensus 172 ~~A~~~~~~aa~~~-----------------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~ 231 (292)
T COG0790 172 KKALYLYRKAAELG-----------------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-L 231 (292)
T ss_pred HhHHHHHHHHHHhc-----------------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-H
Confidence 36777777777654 23568899999876 4589999999999999986 89999999 6
Q ss_pred HHhcc---------------cHHHHHHHHHHHHHhCC
Q 013843 411 YMEIA---------------DLILAELDIKKAIEADP 432 (435)
Q Consensus 411 ~~~lg---------------~~~eA~~~~~~al~l~P 432 (435)
+...| +...|..++.++....+
T Consensus 232 ~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 232 MYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred HHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCC
Confidence 66555 78888888888776544
No 389
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=75.68 E-value=56 Score=32.03 Aligned_cols=63 Identities=6% Similarity=-0.023 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHH--ccCHHHHHHHHH
Q 013843 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLK--LKDYQGAIELCS 391 (435)
Q Consensus 319 ~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~--~~~~~~A~~~~~ 391 (435)
......+..+|+.++|..|...|.+++........ .-....+.+++.+|.. .-+|++|.++++
T Consensus 131 ~~e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~----------~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 131 NTEQGYARRAINAFDYLFAHARLETLLRRLLSAVN----------HTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHhcccChhh----------hhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 44555677899999999999999999976432110 1123445566665554 567888888887
No 390
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=75.19 E-value=40 Score=36.40 Aligned_cols=84 Identities=11% Similarity=0.044 Sum_probs=68.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCC---
Q 013843 323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCH--- 399 (435)
Q Consensus 323 ~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~--- 399 (435)
-.|.....+++.+.|+.+.+.++...|.+... .++.++.++|.++.-.|++.+|..+..++.++.-.
T Consensus 463 L~a~val~~~~~e~a~~lar~al~~L~~~~~~----------~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~ 532 (894)
T COG2909 463 LRAQVALNRGDPEEAEDLARLALVQLPEAAYR----------SRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDV 532 (894)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcccccch----------hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHccc
Confidence 34667788899999999999999999876543 25788999999999999999999999999887322
Q ss_pred -C--HHHHHHHHHHHHhccc
Q 013843 400 -N--VKALYRRAQAYMEIAD 416 (435)
Q Consensus 400 -~--~~a~~~~a~~~~~lg~ 416 (435)
. ..+.+..+.++...|+
T Consensus 533 ~~l~~~~~~~~s~il~~qGq 552 (894)
T COG2909 533 YHLALWSLLQQSEILEAQGQ 552 (894)
T ss_pred HHHHHHHHHHHHHHHHHhhH
Confidence 2 3455667888889994
No 391
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=75.07 E-value=5.8 Score=44.15 Aligned_cols=108 Identities=16% Similarity=0.067 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHh
Q 013843 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD 395 (435)
Q Consensus 316 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 395 (435)
..+....+.|.....++.+..|.+ ..+++.+..+-. -.++.-...+|..+|..+.+++++++|+..+.+|.-
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~-------~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~i 1001 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVM-------GVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACI 1001 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhh-------hhcchhHHHHHHHHHHHHhhhcchHHHHHhccccee
Confidence 566777888888888899998888 777776654321 123444568899999999999999999999998865
Q ss_pred h--------CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Q 013843 396 C--------DCHNVKALYRRAQAYMEIADLILAELDIKKAIEAD 431 (435)
Q Consensus 396 ~--------~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~ 431 (435)
+ .|+...+|-+++...+...+...|+..+.+++.+.
T Consensus 1002 i~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~ 1045 (1236)
T KOG1839|consen 1002 ISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLK 1045 (1236)
T ss_pred eechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhh
Confidence 4 24456889999999999999999999999988763
No 392
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=75.01 E-value=25 Score=31.81 Aligned_cols=103 Identities=12% Similarity=0.043 Sum_probs=58.6
Q ss_pred HHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccC-HHHHH-HHHHHHHh-h-CCCCHHH
Q 013843 328 LFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKD-YQGAI-ELCSKVLD-C-DCHNVKA 403 (435)
Q Consensus 328 ~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~-~~~A~-~~~~~al~-~-~p~~~~a 403 (435)
+|..|+|+.|+....-||+..-..++. -......+.+.-.++-|....+.|+ ++-+. ..+..+.. . -|+.+.|
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~---f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrA 169 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQ---FRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRA 169 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCcc---ccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHH
Confidence 367789999999999999875333211 0012223334445555666666665 22211 11122211 1 2444444
Q ss_pred --HHHHHHHHH---------hcccHHHHHHHHHHHHHhCCC
Q 013843 404 --LYRRAQAYM---------EIADLILAELDIKKAIEADPQ 433 (435)
Q Consensus 404 --~~~~a~~~~---------~lg~~~eA~~~~~~al~l~P~ 433 (435)
|-..|..++ ..++...|+.+|++|++++|+
T Consensus 170 Kl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 170 KLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK 210 (230)
T ss_pred HHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC
Confidence 444455553 345788999999999999986
No 393
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=74.27 E-value=38 Score=33.22 Aligned_cols=67 Identities=21% Similarity=0.074 Sum_probs=52.5
Q ss_pred HHHhHHHHHHHHccCHHHHHHHHHHHH--hhCC--CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 013843 368 SCWLNSAACCLKLKDYQGAIELCSKVL--DCDC--HNVKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 368 ~~~~nla~~~~~~~~~~~A~~~~~~al--~~~p--~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
.+.+-+=.+|+.-+.|++|-+.-.++. +.+. ..+..+|.+|.+..-..+|..|.++|-+|+...|++
T Consensus 210 vLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 210 VLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 334445568888889999988777765 2222 235668889999999999999999999999999974
No 394
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=73.93 E-value=47 Score=33.15 Aligned_cols=103 Identities=13% Similarity=-0.001 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccC--------------HH
Q 013843 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKD--------------YQ 384 (435)
Q Consensus 319 ~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~--------------~~ 384 (435)
...+..|+.+|-.++|+.|...|+.+.+-...+. .+...+.++-..|.|.+.++. ++
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dk---------aw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le 279 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDK---------AWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLE 279 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhch---------hHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHH
Confidence 4677789999999999999999999887554332 233444455555555555442 34
Q ss_pred HHHHHHHHH----HhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q 013843 385 GAIELCSKV----LDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEA 430 (435)
Q Consensus 385 ~A~~~~~~a----l~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l 430 (435)
.|...|.++ .........+.+..+.++..++.+.+|...+-+....
T Consensus 280 ~A~~~Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 280 NAYYTYLKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred HHHHHHHhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 445555552 1112233567777888888999988887777666544
No 395
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=73.34 E-value=50 Score=32.68 Aligned_cols=114 Identities=13% Similarity=0.003 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCH------HH
Q 013843 312 QGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDY------QG 385 (435)
Q Consensus 312 ~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~------~~ 385 (435)
...+-.+.-+.+.|..++....|..|+..+-.|=+.+..... +.-+.-.-.+.+-+.+-.||+.+++. +.
T Consensus 157 ~kAlmmglg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~----klLe~VDNyallnLDIVWCYfrLknitcL~DAe~ 232 (568)
T KOG2561|consen 157 QKALMMGLGLHEKARAAMEREMYSEALLVLLEADESFSLCDS----KLLELVDNYALLNLDIVWCYFRLKNITCLPDAEV 232 (568)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhH----HHHHhhcchhhhhcchhheehhhcccccCChHHH
Confidence 345666778899999999999999999888777554432110 00011111222334455688887652 22
Q ss_pred HHHHHHHHHhhC-------------CCC-HHH-----HHHHHHHHHhcccHHHHHHHHHHHHH
Q 013843 386 AIELCSKVLDCD-------------CHN-VKA-----LYRRAQAYMEIADLILAELDIKKAIE 429 (435)
Q Consensus 386 A~~~~~~al~~~-------------p~~-~~a-----~~~~a~~~~~lg~~~eA~~~~~~al~ 429 (435)
-+..|++.+... +.. .+| +...|...++.|+-++|.++|+.|..
T Consensus 233 RL~ra~kgf~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 233 RLVRARKGFERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred HHHHHHHhhhhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 333344443321 111 233 44468899999999999999998865
No 396
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=73.23 E-value=56 Score=30.47 Aligned_cols=114 Identities=11% Similarity=0.101 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCC
Q 013843 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDC 398 (435)
Q Consensus 319 ~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p 398 (435)
.-+-+.+..++-..+|..|+..++++++....+....+ ......+.+..+..---+++.++++|.+++...-+-.+.-.
T Consensus 36 ~lLe~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee-~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pE 114 (309)
T PF07163_consen 36 SLLEEAADLLVVHRDFQAALETCERGLQSLASDADAEE-PAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPE 114 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc-cccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcc
Confidence 34445567778889999999999999998854322111 11123334443333333578899999999877665554432
Q ss_pred CC-HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 013843 399 HN-VKALYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 399 ~~-~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
+- +|.+-..-..|.+.++....++.-..-| .+|+|
T Consensus 115 klPpkIleLCILLysKv~Ep~amlev~~~WL-~~p~N 150 (309)
T PF07163_consen 115 KLPPKILELCILLYSKVQEPAAMLEVASAWL-QDPSN 150 (309)
T ss_pred cCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH-hCccc
Confidence 22 4555555566778888876665544333 46665
No 397
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=72.95 E-value=11 Score=37.51 Aligned_cols=62 Identities=11% Similarity=0.061 Sum_probs=51.4
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q 013843 372 NSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQ 433 (435)
Q Consensus 372 nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~ 433 (435)
-+-..+.++++|..|+....-.|.-.-..++.+---|-.-.++|-+++|.-++++.+.++|.
T Consensus 362 ~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 362 CRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 34456778999999999999888877777777766677777899999999999999999885
No 398
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=72.59 E-value=67 Score=30.10 Aligned_cols=71 Identities=17% Similarity=0.147 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q 013843 360 KLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC------DCHNVKALYRRAQAYMEIADLILAELDIKKAIEA 430 (435)
Q Consensus 360 ~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~------~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l 430 (435)
+...-++..+-+.+...+++.++|..|+....-.+.- .++-...|..-..+|..+.+..++.+.+..|-.+
T Consensus 118 Ekr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~ 194 (421)
T COG5159 118 EKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTL 194 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHH
Confidence 4455566667788888999999999999988877642 2445677888899999999998888887766543
No 399
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=71.66 E-value=17 Score=37.23 Aligned_cols=85 Identities=20% Similarity=-0.031 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhccc
Q 013843 337 AGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIAD 416 (435)
Q Consensus 337 A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~ 416 (435)
|+..|...+.+.+.+++ +. ...+ ++..+..++....+......++..+|.+..++.++|.++...|.
T Consensus 50 ~~~a~~~~~~~~~~~~~-----------ll-la~~-lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~ 116 (620)
T COG3914 50 AIYALLLGIAINDVNPE-----------LL-LAAF-LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGL 116 (620)
T ss_pred HHHHHHccCccCCCCHH-----------HH-HHHH-HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhh
Confidence 56666666665554432 11 1222 67778888898899999999999999999999999999998888
Q ss_pred HHHHHHHHHH-HHHhCCCC
Q 013843 417 LILAELDIKK-AIEADPQN 434 (435)
Q Consensus 417 ~~eA~~~~~~-al~l~P~n 434 (435)
...+...+.. +....|+|
T Consensus 117 ~~~~~~~~~~~a~~~~~~~ 135 (620)
T COG3914 117 QFLALADISEIAEWLSPDN 135 (620)
T ss_pred HHHHHHHHHHHHHhcCcch
Confidence 7777766665 88888876
No 400
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=71.58 E-value=2.9 Score=39.84 Aligned_cols=80 Identities=13% Similarity=-0.018 Sum_probs=58.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH
Q 013843 324 EGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKA 403 (435)
Q Consensus 324 ~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a 403 (435)
.+...++.+.|..|+..-..+++..+. ...+|+.++..++.+.++++|++.+..+....|++...
T Consensus 281 ~~~~~lk~~~~~~a~~~~~~~~~~~~s---------------~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i 345 (372)
T KOG0546|consen 281 LAAVGLKVKGRGGARFRTNEALRDERS---------------KTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAI 345 (372)
T ss_pred hHHhcccccCCCcceeccccccccChh---------------hCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHH
Confidence 455556666777776666666653322 24669999999999999999999999999999998877
Q ss_pred HHHHHHHHHhcccHH
Q 013843 404 LYRRAQAYMEIADLI 418 (435)
Q Consensus 404 ~~~~a~~~~~lg~~~ 418 (435)
.-.+..+.....++.
T Consensus 346 ~~~~~~~~~~~~~~~ 360 (372)
T KOG0546|consen 346 EEELENVRQKKKQYN 360 (372)
T ss_pred HHHHHHhhhHHHHHH
Confidence 666666655555443
No 401
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=70.20 E-value=60 Score=31.10 Aligned_cols=82 Identities=11% Similarity=-0.073 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH--
Q 013843 334 YERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAY-- 411 (435)
Q Consensus 334 y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~-- 411 (435)
.+..+..|++||+.+|.+. .++..+=.+..+.-+-++..+-.++++..+|++...|...-...
T Consensus 47 ~E~klsilerAL~~np~~~---------------~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~ 111 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSE---------------RLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQS 111 (321)
T ss_pred HHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence 4667889999999977543 22333333445666888888999999999999987764432222
Q ss_pred -HhcccHHHHHHHHHHHHHh
Q 013843 412 -MEIADLILAELDIKKAIEA 430 (435)
Q Consensus 412 -~~lg~~~eA~~~~~~al~l 430 (435)
+..-.+...+..|.++|..
T Consensus 112 ~~~~f~v~~~~~~y~~~l~~ 131 (321)
T PF08424_consen 112 NFASFTVSDVRDVYEKCLRA 131 (321)
T ss_pred HhccCcHHHHHHHHHHHHHH
Confidence 2334577888888888764
No 402
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=69.92 E-value=58 Score=26.38 Aligned_cols=85 Identities=13% Similarity=0.065 Sum_probs=58.6
Q ss_pred CCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhh--CCCCHHHHHHHHH
Q 013843 332 GKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC--DCHNVKALYRRAQ 409 (435)
Q Consensus 332 g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~~a~ 409 (435)
+.-..-...++++++....+....++.. |+.+-.-|..+-+ .+.+.|..+... --..+..|-..|.
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~R----------ylkiWi~ya~~~~--~~~~if~~l~~~~IG~~~A~fY~~wA~ 107 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDER----------YLKIWIKYADLSS--DPREIFKFLYSKGIGTKLALFYEEWAE 107 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HH----------HHHHHHHHHTTBS--HHHHHHHHHHHHTTSTTBHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHH----------HHHHHHHHHHHcc--CHHHHHHHHHHcCccHHHHHHHHHHHH
Confidence 4445556788888888766544432222 5555555555555 777777777654 4566778888899
Q ss_pred HHHhcccHHHHHHHHHHHH
Q 013843 410 AYMEIADLILAELDIKKAI 428 (435)
Q Consensus 410 ~~~~lg~~~eA~~~~~~al 428 (435)
.+...|++++|.+.|++++
T Consensus 108 ~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 108 FLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHTT-HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHhhC
Confidence 9999999999999999875
No 403
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=69.59 E-value=14 Score=34.01 Aligned_cols=51 Identities=18% Similarity=0.171 Sum_probs=44.6
Q ss_pred HccCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 013843 379 KLKDYQGAIELCSKVLDCDCHN----VKALYRRAQAYMEIADLILAELDIKKAIE 429 (435)
Q Consensus 379 ~~~~~~~A~~~~~~al~~~p~~----~~a~~~~a~~~~~lg~~~eA~~~~~~al~ 429 (435)
+..+.++|+..+.++|++.+.- .+|+-.+-.+++++++|++-+..|++.|.
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 4558999999999999999864 58899999999999999999998888764
No 404
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=68.84 E-value=14 Score=20.93 Aligned_cols=29 Identities=17% Similarity=0.181 Sum_probs=23.8
Q ss_pred cCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 013843 381 KDYQGAIELCSKVLDCDCHNVKALYRRAQ 409 (435)
Q Consensus 381 ~~~~~A~~~~~~al~~~p~~~~a~~~~a~ 409 (435)
++++.|...|++++...|.+...|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 46788899999999999988888876654
No 405
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=68.29 E-value=32 Score=32.90 Aligned_cols=101 Identities=23% Similarity=0.284 Sum_probs=69.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHH--HHHHHHHHHHhhCCCC
Q 013843 323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ--GAIELCSKVLDCDCHN 400 (435)
Q Consensus 323 ~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~--~A~~~~~~al~~~p~~ 400 (435)
+.|..+....+|..|..+|-+|++-..... ++.+.+..++ |.-+ |-..++..+ .++-....+++++...
T Consensus 214 qSGIlha~ekDykTafSYFyEAfEgf~s~~----~~v~A~~sLK---YMlL--cKIMln~~ddv~~lls~K~~l~y~g~~ 284 (411)
T KOG1463|consen 214 QSGILHAAEKDYKTAFSYFYEAFEGFDSLD----DDVKALTSLK---YMLL--CKIMLNLPDDVAALLSAKLALKYAGRD 284 (411)
T ss_pred hccceeecccccchHHHHHHHHHccccccC----CcHHHHHHHH---HHHH--HHHHhcCHHHHHHHHhhHHHHhccCcc
Confidence 345555566899999999999988654322 1122333333 3333 444455544 4566677788888889
Q ss_pred HHHHHHHHHHHH--hcccHHHHHHHHHHHHHhCC
Q 013843 401 VKALYRRAQAYM--EIADLILAELDIKKAIEADP 432 (435)
Q Consensus 401 ~~a~~~~a~~~~--~lg~~~eA~~~~~~al~l~P 432 (435)
..|+-..|.++. .+.+|+.|+..|+.-|.-||
T Consensus 285 i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 285 IDAMKAVAEAFGNRSLKDFEKALADYKKELAEDP 318 (411)
T ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcCh
Confidence 999999999986 45789999999999888776
No 406
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=66.97 E-value=35 Score=28.61 Aligned_cols=65 Identities=6% Similarity=-0.089 Sum_probs=53.9
Q ss_pred HHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC
Q 013843 368 SCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADP 432 (435)
Q Consensus 368 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P 432 (435)
..+.....+-+...+...+.....-.--+.|+.+..-..-|..+...|+|.+|+..|+...+-.+
T Consensus 11 ~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 11 GGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence 33455556666688999998888888889999999999999999999999999999998765443
No 407
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=66.96 E-value=16 Score=36.13 Aligned_cols=68 Identities=21% Similarity=0.147 Sum_probs=44.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhh
Q 013843 322 KEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC 396 (435)
Q Consensus 322 ~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 396 (435)
......+.-.|+|..|++...- +++.... -....-.-.+.+++..|.||+.+++|..|++.+..+|-.
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~-idl~~~~------l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~y 193 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLEN-IDLNKKG------LYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLY 193 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhc-cCcccch------hhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556677899888876543 1111110 000111223567899999999999999999999998854
No 408
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=66.57 E-value=21 Score=20.68 Aligned_cols=29 Identities=24% Similarity=0.255 Sum_probs=23.8
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHhc
Q 013843 386 AIELCSKVLDCDCHNVKALYRRAQAYMEI 414 (435)
Q Consensus 386 A~~~~~~al~~~p~~~~a~~~~a~~~~~l 414 (435)
.++.+.+++..+|.|-.+|..|--++..+
T Consensus 2 El~~~~~~l~~~pknys~W~yR~~ll~~l 30 (31)
T PF01239_consen 2 ELEFTKKALEKDPKNYSAWNYRRWLLKQL 30 (31)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccccHHHHHHHHHHHc
Confidence 46788999999999999998877666544
No 409
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=66.23 E-value=44 Score=24.45 Aligned_cols=20 Identities=35% Similarity=0.454 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHhhCCCCHH
Q 013843 383 YQGAIELCSKVLDCDCHNVK 402 (435)
Q Consensus 383 ~~~A~~~~~~al~~~p~~~~ 402 (435)
|.+|++.+..+++..|+...
T Consensus 29 Y~~aie~l~~~lk~e~d~~~ 48 (77)
T cd02683 29 YQEGIDLLMQVLKGTKDEAK 48 (77)
T ss_pred HHHHHHHHHHHHhhCCCHHH
Confidence 45555555555666775543
No 410
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=65.87 E-value=32 Score=37.99 Aligned_cols=63 Identities=17% Similarity=0.173 Sum_probs=47.6
Q ss_pred HhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH-------HHHHHHHHHhcccHHHHHHHHHHHHHhCCCC
Q 013843 370 WLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKA-------LYRRAQAYMEIADLILAELDIKKAIEADPQN 434 (435)
Q Consensus 370 ~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a-------~~~~a~~~~~lg~~~eA~~~~~~al~l~P~n 434 (435)
|+-.|.+|.++++|.+-++++..|++.-|.++.. -||+-.+.... ...|+...--++..-|.+
T Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 624 (932)
T PRK13184 555 YLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKH--RREALVFMLLALWIAPEK 624 (932)
T ss_pred HHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhCccc
Confidence 7888999999999999999999999999988754 34444444332 345667777777777753
No 411
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=65.04 E-value=91 Score=28.84 Aligned_cols=100 Identities=12% Similarity=0.035 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHH-HHHHHHHHHH
Q 013843 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQ-GAIELCSKVL 394 (435)
Q Consensus 316 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~-~A~~~~~~al 394 (435)
+..+.+.+-+..+++.+++..|..+-.-.++.........+++. .-++..++.....-+ .-....++|+
T Consensus 8 eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~----------~~rl~~l~~~~~~~~p~r~~fi~~ai 77 (260)
T PF04190_consen 8 EAIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEES----------IARLIELISLFPPEEPERKKFIKAAI 77 (260)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHH----------HHHHHHHHHHS-TT-TTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHH----------HHHHHHHHHhCCCCcchHHHHHHHHH
Confidence 34455666677888999999988877666666544322212221 223444443333211 2334445555
Q ss_pred hhC------CCCHHHHHHHHHHHHhcccHHHHHHHHH
Q 013843 395 DCD------CHNVKALYRRAQAYMEIADLILAELDIK 425 (435)
Q Consensus 395 ~~~------p~~~~a~~~~a~~~~~lg~~~eA~~~~~ 425 (435)
+.. -.++..+..+|..+.+-+++.+|..+|-
T Consensus 78 ~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 78 KWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp HHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 442 2357889999999999999999998874
No 412
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=64.90 E-value=15 Score=26.77 Aligned_cols=29 Identities=17% Similarity=0.104 Sum_probs=23.6
Q ss_pred HHHhHHHHHHHHccCHHHHHHHHHHHHhh
Q 013843 368 SCWLNSAACCLKLKDYQGAIELCSKVLDC 396 (435)
Q Consensus 368 ~~~~nla~~~~~~~~~~~A~~~~~~al~~ 396 (435)
..+...|.--=..|+|++|+..|..|++.
T Consensus 7 i~Lv~~A~~eD~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 7 HFLVTQAFDEDEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHHHHHhhHhhhHHHHHHHHHHHHHH
Confidence 34566677777889999999999999986
No 413
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=64.31 E-value=32 Score=27.71 Aligned_cols=59 Identities=15% Similarity=-0.072 Sum_probs=47.6
Q ss_pred HhHHHHHHHHccCHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 013843 370 WLNSAACCLKLKDYQGAIELCSKVLDCDCHN---------------VKALYRRAQAYMEIADLILAELDIKKAI 428 (435)
Q Consensus 370 ~~nla~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~a~~~~a~~~~~lg~~~eA~~~~~~al 428 (435)
+.++|...++.+++-.++-+|.+|+.+-.+- +-...++|.-+..+|+.+-.+++++-|-
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlAS 77 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLAS 77 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHH
Confidence 6688899999999999999999999752211 2346789999999999999999987553
No 414
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=64.01 E-value=1.2e+02 Score=30.81 Aligned_cols=119 Identities=17% Similarity=0.148 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcc-C------------CCCChHHH----HHHHHHHHHHHhHHHHH-
Q 013843 315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE-D------------GSFVDDEQ----KLVKSLRVSCWLNSAAC- 376 (435)
Q Consensus 315 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~-~------------~~~~~~~~----~~~~~~~~~~~~nla~~- 376 (435)
++.+..-++.+..|-+ .+-..|...|.+|+...-. . +..-.++. ...+......-.+++.+
T Consensus 129 fnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl 207 (711)
T COG1747 129 FNDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVL 207 (711)
T ss_pred chhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHH
Confidence 4445555666665555 8888888899888764321 0 01001111 11222222222233332
Q ss_pred -------HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh--------------------cccHHHHHHHHHHHHH
Q 013843 377 -------CLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYME--------------------IADLILAELDIKKAIE 429 (435)
Q Consensus 377 -------~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~--------------------lg~~~eA~~~~~~al~ 429 (435)
|....+|.+|++...-.|++|..+.+|.-.+-.-+.. -.++.+|+.+|++.+.
T Consensus 208 ~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~ 287 (711)
T COG1747 208 MQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMH 287 (711)
T ss_pred HHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHhe
Confidence 4446789999999999999999988886555444444 4578889999998887
Q ss_pred hCCCC
Q 013843 430 ADPQN 434 (435)
Q Consensus 430 l~P~n 434 (435)
++..|
T Consensus 288 f~eGn 292 (711)
T COG1747 288 FDEGN 292 (711)
T ss_pred eccCc
Confidence 77654
No 415
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=63.71 E-value=49 Score=32.46 Aligned_cols=90 Identities=19% Similarity=0.117 Sum_probs=62.2
Q ss_pred HcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHcc--CHHHHHHHHHHHHhhCCCCHHHHHHH
Q 013843 330 KNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLK--DYQGAIELCSKVLDCDCHNVKALYRR 407 (435)
Q Consensus 330 ~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~--~~~~A~~~~~~al~~~p~~~~a~~~~ 407 (435)
+..-.+.-+.....+|..+|... .+++-+.-++.+.. +|..=+..|+++|+.||.|..+|..|
T Consensus 87 k~~~ld~eL~~~~~~L~~npksY---------------~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YR 151 (421)
T KOG0529|consen 87 KQALLDEELKYVESALKVNPKSY---------------GAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYR 151 (421)
T ss_pred HHHhhHHHHHHHHHHHHhCchhH---------------HHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHH
Confidence 33456667777888888887754 44777777776544 47888999999999999998887544
Q ss_pred HHHHH-hccc---HHHHHHHHHHHHHhCCCC
Q 013843 408 AQAYM-EIAD---LILAELDIKKAIEADPQN 434 (435)
Q Consensus 408 a~~~~-~lg~---~~eA~~~~~~al~l~P~n 434 (435)
=.+.. .... ..+-+++..+++.-++.|
T Consensus 152 RfV~~~~~~~~~~~~~El~ftt~~I~~nfSN 182 (421)
T KOG0529|consen 152 RFVVEQAERSRNLEKEELEFTTKLINDNFSN 182 (421)
T ss_pred HHHHHHHhcccccchhHHHHHHHHHhccchh
Confidence 33333 2222 566677777777666654
No 416
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=62.92 E-value=55 Score=27.66 Aligned_cols=73 Identities=18% Similarity=0.129 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHH
Q 013843 315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSED-GSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKV 393 (435)
Q Consensus 315 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~-~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 393 (435)
..........++.+++.|+...|.+.++-+-.-.... .... --......+.|..++..|+|.+|...+..|
T Consensus 72 ~~~~~~ai~~a~~~l~~g~~~~A~~~L~~~~~ei~~~~~~lP--------L~~~~~av~~A~~ll~~~k~~eA~~aL~~A 143 (155)
T PF10938_consen 72 TPEKKAAIKTANELLKKGDKQAAREILKLAGSEIDITTALLP--------LAQTPAAVKQAAALLDEGKYYEANAALKQA 143 (155)
T ss_dssp -HHHHHHHHHHHHHHHTT-HHHHHHHHHHTT-EEEEEEEEEE--------HHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcccceeeeeeCC--------HHhhHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3456788899999999999999998877653211000 0000 001233568899999999999999999888
Q ss_pred Hh
Q 013843 394 LD 395 (435)
Q Consensus 394 l~ 395 (435)
+.
T Consensus 144 ~~ 145 (155)
T PF10938_consen 144 LD 145 (155)
T ss_dssp HH
T ss_pred hc
Confidence 74
No 417
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=62.40 E-value=13 Score=37.60 Aligned_cols=66 Identities=14% Similarity=-0.008 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHc---CCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhh
Q 013843 320 RKKEEGNLLFKN---GKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC 396 (435)
Q Consensus 320 ~~~~~g~~~~~~---g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 396 (435)
-+-+.+.+++++ |+.-.|+..+..|++++|.. ..+++.++.|+..++++.+|+.+...+...
T Consensus 410 ~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~---------------~kah~~la~aL~el~r~~eal~~~~alq~~ 474 (758)
T KOG1310|consen 410 LLENRAAALMKRKWRGDSYLALRDCHVALRLNPSI---------------QKAHFRLARALNELTRYLEALSCHWALQMS 474 (758)
T ss_pred HHHhHHHHHHhhhccccHHHHHHhHHhhccCChHH---------------HHHHHHHHHHHHHHhhHHHhhhhHHHHhhc
Confidence 344455555554 45666777788888877653 467999999999999999999977777667
Q ss_pred CCCC
Q 013843 397 DCHN 400 (435)
Q Consensus 397 ~p~~ 400 (435)
.|.+
T Consensus 475 ~Ptd 478 (758)
T KOG1310|consen 475 FPTD 478 (758)
T ss_pred Cchh
Confidence 7744
No 418
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.14 E-value=42 Score=34.07 Aligned_cols=62 Identities=23% Similarity=0.135 Sum_probs=52.8
Q ss_pred HhHHHHHHHHccCHHHHHHHHHHHHhhC---CC----CHHHHHHHHHHHHhccc-HHHHHHHHHHHHHhC
Q 013843 370 WLNSAACCLKLKDYQGAIELCSKVLDCD---CH----NVKALYRRAQAYMEIAD-LILAELDIKKAIEAD 431 (435)
Q Consensus 370 ~~nla~~~~~~~~~~~A~~~~~~al~~~---p~----~~~a~~~~a~~~~~lg~-~~eA~~~~~~al~l~ 431 (435)
++-+|.|+..+|+...|..++..+++.. .. .+-|+|-+|..+..++. ..+|.+++.+|-...
T Consensus 452 ~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 452 YLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYA 521 (546)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhc
Confidence 5668999999999999999999888431 11 37899999999999999 999999999998765
No 419
>PF12854 PPR_1: PPR repeat
Probab=62.00 E-value=21 Score=21.26 Aligned_cols=27 Identities=11% Similarity=-0.017 Sum_probs=19.5
Q ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHH
Q 013843 400 NVKALYRRAQAYMEIADLILAELDIKK 426 (435)
Q Consensus 400 ~~~a~~~~a~~~~~lg~~~eA~~~~~~ 426 (435)
|.-.|..+-.+|.+.|+.++|.+.|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 455666777777788888888777764
No 420
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=61.84 E-value=48 Score=31.69 Aligned_cols=64 Identities=14% Similarity=0.012 Sum_probs=49.7
Q ss_pred HhHHHHHHHHccCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q 013843 370 WLNSAACCLKLKDYQGAIELCSKVLDC--DCHNVKALYRRAQAYMEIADLILAELDIKKAIEADPQ 433 (435)
Q Consensus 370 ~~nla~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~ 433 (435)
-+|+|.+..+..-...++...+-.+.. -..+.-.+--+|..+.++|+.++|...|++|+.+.++
T Consensus 332 ~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~ 397 (415)
T COG4941 332 TLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARN 397 (415)
T ss_pred eehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCC
Confidence 468888887777777777766655543 2245556677899999999999999999999999775
No 421
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=61.60 E-value=75 Score=28.61 Aligned_cols=63 Identities=8% Similarity=-0.071 Sum_probs=48.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCH
Q 013843 324 EGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNV 401 (435)
Q Consensus 324 ~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~ 401 (435)
....+.+.+..++|+...+.-++..|.+... ...+=..+.-.|+|++|...|+-+-++.|+..
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkakPtda~~---------------RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAKPTDAGG---------------RHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCccccc---------------hhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 3456788889999999999988888876532 22333456678999999999999999999874
No 422
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=61.09 E-value=24 Score=21.27 Aligned_cols=29 Identities=28% Similarity=0.110 Sum_probs=16.8
Q ss_pred HHHHHHH--HHHHhcc-----cHHHHHHHHHHHHHh
Q 013843 402 KALYRRA--QAYMEIA-----DLILAELDIKKAIEA 430 (435)
Q Consensus 402 ~a~~~~a--~~~~~lg-----~~~eA~~~~~~al~l 430 (435)
.|.+++| .+|..-. ++++|+.+|++|-+.
T Consensus 2 ~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 2 EAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHhhhhccCCccccccchHHHHHHHHHc
Confidence 4566666 4333222 467777777777654
No 423
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=60.95 E-value=49 Score=33.34 Aligned_cols=25 Identities=32% Similarity=0.450 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q 013843 320 RKKEEGNLLFKNGKYERAGKKYNKA 344 (435)
Q Consensus 320 ~~~~~g~~~~~~g~y~~A~~~y~~a 344 (435)
.|++.|..++++|+++-|..+|+++
T Consensus 349 ~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 349 KWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp HHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 5666666666666666666666654
No 424
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.41 E-value=1.1e+02 Score=31.51 Aligned_cols=111 Identities=21% Similarity=0.186 Sum_probs=70.7
Q ss_pred HHHHHHHHH---cCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhh--
Q 013843 322 KEEGNLLFK---NGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDC-- 396 (435)
Q Consensus 322 ~~~g~~~~~---~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~-- 396 (435)
.+.|+.+|+ ...|++|...|.-|....+.+.-.. .-......+..++.+|..+..+|+.+-|-....++|=.
T Consensus 239 sq~~isfF~~~hs~sYeqaq~~F~~av~~~d~n~v~~---lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d 315 (665)
T KOG2422|consen 239 SQKGISFFKFEHSNSYEQAQRDFYLAVIVHDPNNVLI---LLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFD 315 (665)
T ss_pred ccCceeEEEeecchHHHHHHHHHHHHHhhcCCcceee---eeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHH
Confidence 344455443 3467788877777766443221000 00000123455788899998999887776666665521
Q ss_pred ---C----------------CCC---HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC-CC
Q 013843 397 ---D----------------CHN---VKALYRRAQAYMEIADLILAELDIKKAIEADPQ-NR 435 (435)
Q Consensus 397 ---~----------------p~~---~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P~-n~ 435 (435)
. |.| ..++|+--+.+.+.|.+.-|.++++-.+.+||. |+
T Consensus 316 ~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDP 377 (665)
T KOG2422|consen 316 RALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDP 377 (665)
T ss_pred HHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCc
Confidence 2 222 256677777888999999999999999999997 54
No 425
>PF15469 Sec5: Exocyst complex component Sec5
Probab=60.35 E-value=95 Score=26.82 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=21.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHhccC
Q 013843 326 NLLFKNGKYERAGKKYNKAADCVSED 351 (435)
Q Consensus 326 ~~~~~~g~y~~A~~~y~~al~~~~~~ 351 (435)
..+.+.|+|+.|+..|.+|..+....
T Consensus 94 ~~~i~~~dy~~~i~dY~kak~l~~~~ 119 (182)
T PF15469_consen 94 RECIKKGDYDQAINDYKKAKSLFEKY 119 (182)
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHHh
Confidence 33568999999999999999987543
No 426
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=60.06 E-value=38 Score=31.71 Aligned_cols=74 Identities=16% Similarity=0.097 Sum_probs=51.1
Q ss_pred CCCCCChHHHHHHHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccC
Q 013843 305 VPWEMNNQGKIEAAG--RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKD 382 (435)
Q Consensus 305 ~~~~~~~~~~~~~a~--~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~ 382 (435)
..|.-...++++... .+..-+..|...|.+.+|+++.++++.++|-+... +.-+-..+..+|+
T Consensus 264 y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~---------------nk~lm~~la~~gD 328 (361)
T COG3947 264 YPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQD---------------NKGLMASLATLGD 328 (361)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHH---------------HHHHHHHHHHhcc
Confidence 345545555544332 33445677889999999999999999998765422 4455567778888
Q ss_pred HHHHHHHHHHH
Q 013843 383 YQGAIELCSKV 393 (435)
Q Consensus 383 ~~~A~~~~~~a 393 (435)
--.|+.+|++.
T Consensus 329 ~is~~khyery 339 (361)
T COG3947 329 EISAIKHYERY 339 (361)
T ss_pred chhhhhHHHHH
Confidence 77777777654
No 427
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=59.64 E-value=55 Score=27.16 Aligned_cols=49 Identities=12% Similarity=0.175 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHH
Q 013843 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSA 374 (435)
Q Consensus 318 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla 374 (435)
+....+.+..++..|+|.-|+++...++..+|.+. +.+.+++.++-.+|
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~--------~ar~l~A~al~~lg 118 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNE--------EARQLKADALEQLG 118 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-H--------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcH--------HHHHHHHHHHHHHH
Confidence 35677889999999999999999999999887653 34455555554444
No 428
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.17 E-value=36 Score=37.40 Aligned_cols=88 Identities=17% Similarity=0.234 Sum_probs=54.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhC---
Q 013843 321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCD--- 397 (435)
Q Consensus 321 ~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~--- 397 (435)
...-|+.+|..+.|+.|.-+|...-. +..+|..+..+|+|+.|++..++|-...
T Consensus 1197 i~~vGdrcf~~~~y~aAkl~y~~vSN-----------------------~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK 1253 (1666)
T KOG0985|consen 1197 IQQVGDRCFEEKMYEAAKLLYSNVSN-----------------------FAKLASTLVYLGEYQGAVDAARKANSTKTWK 1253 (1666)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHHhhh-----------------------HHHHHHHHHHHHHHHHHHHHhhhccchhHHH
Confidence 34457778888888877777754321 5677788888888888888877763221
Q ss_pred --------CC--------------CHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Q 013843 398 --------CH--------------NVKALYRRAQAYMEIADLILAELDIKKAIEAD 431 (435)
Q Consensus 398 --------p~--------------~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~ 431 (435)
.. ++.-+-.+-..|...|-|+|-+..++.+|-++
T Consensus 1254 ~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE 1309 (1666)
T KOG0985|consen 1254 EVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE 1309 (1666)
T ss_pred HHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh
Confidence 00 01112233445566667777777777666554
No 429
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=59.03 E-value=59 Score=32.83 Aligned_cols=60 Identities=15% Similarity=0.194 Sum_probs=47.2
Q ss_pred HcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccC-HHHHHHHHHHHHhhCCCCHHHH
Q 013843 330 KNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKD-YQGAIELCSKVLDCDCHNVKAL 404 (435)
Q Consensus 330 ~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~-~~~A~~~~~~al~~~p~~~~a~ 404 (435)
+.+.|.+--..|.++|...|++++. |..-|.-.+..+. .+.|...+.++|..+|++++.|
T Consensus 117 k~~~~~~v~ki~~~~l~~Hp~~~dL---------------WI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw 177 (568)
T KOG2396|consen 117 KKKTYGEVKKIFAAMLAKHPNNPDL---------------WIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLW 177 (568)
T ss_pred HhcchhHHHHHHHHHHHhCCCCchh---------------HHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHH
Confidence 4455888889999999999988744 5555555555554 8999999999999999998654
No 430
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=58.94 E-value=40 Score=33.98 Aligned_cols=32 Identities=16% Similarity=0.116 Sum_probs=27.5
Q ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 013843 398 CHNVKALYRRAQAYMEIADLILAELDIKKAIE 429 (435)
Q Consensus 398 p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~ 429 (435)
.++..-|-++|...+..|+++-|..+|+++-.
T Consensus 344 ~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d 375 (443)
T PF04053_consen 344 LDDPEKWKQLGDEALRQGNIELAEECYQKAKD 375 (443)
T ss_dssp CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-
T ss_pred cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC
Confidence 34678999999999999999999999998643
No 431
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=58.65 E-value=17 Score=20.46 Aligned_cols=26 Identities=12% Similarity=0.279 Sum_probs=16.3
Q ss_pred HhHHHHHHHHccCHHHHHHHHHHHHh
Q 013843 370 WLNSAACCLKLKDYQGAIELCSKVLD 395 (435)
Q Consensus 370 ~~nla~~~~~~~~~~~A~~~~~~al~ 395 (435)
|+.+-.+|.+.+++++|.+.+++..+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 44555666666777777666666544
No 432
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=58.38 E-value=36 Score=31.01 Aligned_cols=56 Identities=25% Similarity=0.288 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHH-HccCHHHHHHHHHHHHhh
Q 013843 334 YERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCL-KLKDYQGAIELCSKVLDC 396 (435)
Q Consensus 334 y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~~~~~~A~~~~~~al~~ 396 (435)
-++|...|++|+.+....... ...++..+.+|.+..|+ .+++.++|+..+++|+..
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~-------~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPP-------THPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCT-------TSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCC-------CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 477899999999987652222 12556677788887664 499999999999998754
No 433
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=58.12 E-value=74 Score=24.87 Aligned_cols=54 Identities=19% Similarity=0.109 Sum_probs=40.8
Q ss_pred HHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhccc
Q 013843 363 KSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIAD 416 (435)
Q Consensus 363 ~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~ 416 (435)
+..+....+..|..-+-.|+|..|.+...++-+..+...-.|..-|++-..+|+
T Consensus 55 r~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 55 RRRKAQRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 344455567788888999999999999999988766666666666777666654
No 434
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=57.58 E-value=44 Score=26.49 Aligned_cols=43 Identities=16% Similarity=0.095 Sum_probs=36.8
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 013843 306 PWEMNNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCV 348 (435)
Q Consensus 306 ~~~~~~~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~ 348 (435)
.+..+...-+..+..+..+|..+++.|+.+.|--+|.+.+.+.
T Consensus 26 ~~~~~l~~y~rsa~~l~~~A~~~~~egd~E~AYvl~~R~~~L~ 68 (115)
T PF08969_consen 26 DKNIPLKRYLRSANKLLREAEEYRQEGDEEQAYVLYMRYLTLV 68 (115)
T ss_dssp STTS-HHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 3556677788999999999999999999999999999998877
No 435
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=56.96 E-value=27 Score=24.70 Aligned_cols=27 Identities=19% Similarity=0.341 Sum_probs=16.3
Q ss_pred HhHHHHHHHHccCHHHHHHHHHHHHhh
Q 013843 370 WLNSAACCLKLKDYQGAIELCSKVLDC 396 (435)
Q Consensus 370 ~~nla~~~~~~~~~~~A~~~~~~al~~ 396 (435)
+.+.|.-.-+.|+|++|+.+|.++++.
T Consensus 8 ~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 8 LIKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 344555555566777777776666653
No 436
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=56.94 E-value=26 Score=20.53 Aligned_cols=27 Identities=41% Similarity=0.202 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhc----ccHHHHHHHHHHHHH
Q 013843 403 ALYRRAQAYMEI----ADLILAELDIKKAIE 429 (435)
Q Consensus 403 a~~~~a~~~~~l----g~~~eA~~~~~~al~ 429 (435)
+.+++|..|..- .+..+|..+|++|-+
T Consensus 3 a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 3 AQYNLGQMYEYGLGVKKDLEKALEYYKKAAE 33 (36)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 444555554421 245555555555544
No 437
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=56.08 E-value=38 Score=31.35 Aligned_cols=104 Identities=16% Similarity=0.213 Sum_probs=67.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH
Q 013843 324 EGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKA 403 (435)
Q Consensus 324 ~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a 403 (435)
.|+.||..++|.+-....++.-..+..+.. .++..+..+ ...+|.---+.|..+++-.+-...|+++|.+...-+..
T Consensus 151 Lgkl~fd~~e~~kl~KIlkqLh~SCq~edG-edD~kKGtQ--LLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHP 227 (440)
T KOG1464|consen 151 LGKLYFDRGEYTKLQKILKQLHQSCQTEDG-EDDQKKGTQ--LLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHP 227 (440)
T ss_pred HhhhheeHHHHHHHHHHHHHHHHHhccccC-chhhhccch--hhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCch
Confidence 578888888888877766665555443321 122222222 22334444567778888888888899999886433322
Q ss_pred H----HH--HHHHHHhcccHHHHHHHHHHHHHh
Q 013843 404 L----YR--RAQAYMEIADLILAELDIKKAIEA 430 (435)
Q Consensus 404 ~----~~--~a~~~~~lg~~~eA~~~~~~al~l 430 (435)
+ .| =|..+++-|+|++|..+|-.|.+-
T Consensus 228 lImGvIRECGGKMHlreg~fe~AhTDFFEAFKN 260 (440)
T KOG1464|consen 228 LIMGVIRECGGKMHLREGEFEKAHTDFFEAFKN 260 (440)
T ss_pred HHHhHHHHcCCccccccchHHHHHhHHHHHHhc
Confidence 1 11 256788889999999999888763
No 438
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.92 E-value=70 Score=34.39 Aligned_cols=33 Identities=18% Similarity=0.438 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Q 013843 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVS 349 (435)
Q Consensus 317 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~ 349 (435)
.++-++..|+.+|++|+|++|...|.+++....
T Consensus 367 ~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le 399 (933)
T KOG2114|consen 367 LAEIHRKYGDYLYGKGDFDEATDQYIETIGFLE 399 (933)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCC
Confidence 345677889999999999999999999987653
No 439
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=55.49 E-value=30 Score=32.73 Aligned_cols=71 Identities=8% Similarity=0.121 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhH-HHHHHHHccCHHHHHHHHHHHHhhC
Q 013843 319 GRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLN-SAACCLKLKDYQGAIELCSKVLDCD 397 (435)
Q Consensus 319 ~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~n-la~~~~~~~~~~~A~~~~~~al~~~ 397 (435)
.-+.+-++...+.+-|.+--..|.+++...|.+.+. |.. -+.-+...++++.|...+.++|.++
T Consensus 108 k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdl---------------WI~~c~~e~~~~ani~s~Ra~f~~glR~N 172 (435)
T COG5191 108 KIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDL---------------WIYCCAFELFEIANIESSRAMFLKGLRMN 172 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcee---------------eeeeccchhhhhccHHHHHHHHHhhhccC
Confidence 344445555566677888888999999999987654 322 3344667889999999999999999
Q ss_pred CCCHHHH
Q 013843 398 CHNVKAL 404 (435)
Q Consensus 398 p~~~~a~ 404 (435)
|++++.|
T Consensus 173 ~~~p~iw 179 (435)
T COG5191 173 SRSPRIW 179 (435)
T ss_pred CCCchHH
Confidence 9998775
No 440
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.88 E-value=1.4e+02 Score=30.58 Aligned_cols=78 Identities=15% Similarity=0.084 Sum_probs=56.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCC
Q 013843 321 KKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN 400 (435)
Q Consensus 321 ~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~ 400 (435)
+...+..+...|+-+.|+..+..+++ ...++....+++.+|.++.-+.+|.+|..++....... +.
T Consensus 270 ll~~ar~l~~~g~~eaa~~~~~~~v~-------------~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~des-dW 335 (546)
T KOG3783|consen 270 LLMEARILSIKGNSEAAIDMESLSIP-------------IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDES-DW 335 (546)
T ss_pred HHHHHHHHHHcccHHHHHHHHHhccc-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhh-hh
Confidence 34456666777777777777777665 13456667779999999999999999999999988876 46
Q ss_pred HHHHHH--HHHHHH
Q 013843 401 VKALYR--RAQAYM 412 (435)
Q Consensus 401 ~~a~~~--~a~~~~ 412 (435)
..|+|. .|.|++
T Consensus 336 S~a~Y~Yfa~cc~l 349 (546)
T KOG3783|consen 336 SHAFYTYFAGCCLL 349 (546)
T ss_pred hHHHHHHHHHHHHh
Confidence 666543 445553
No 441
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=54.38 E-value=25 Score=25.94 Aligned_cols=27 Identities=19% Similarity=0.014 Sum_probs=18.9
Q ss_pred HhHHHHHHHHccCHHHHHHHHHHHHhh
Q 013843 370 WLNSAACCLKLKDYQGAIELCSKVLDC 396 (435)
Q Consensus 370 ~~nla~~~~~~~~~~~A~~~~~~al~~ 396 (435)
+.+.|.++-..|+.++|+.+|++++..
T Consensus 11 ~I~kaL~~dE~g~~e~Al~~Y~~gi~~ 37 (79)
T cd02679 11 EISKALRADEWGDKEQALAHYRKGLRE 37 (79)
T ss_pred HHHHHhhhhhcCCHHHHHHHHHHHHHH
Confidence 446666666677777788888777754
No 442
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=53.66 E-value=21 Score=25.97 Aligned_cols=29 Identities=21% Similarity=0.147 Sum_probs=22.6
Q ss_pred HHHhHHHHHHHHccCHHHHHHHHHHHHhh
Q 013843 368 SCWLNSAACCLKLKDYQGAIELCSKVLDC 396 (435)
Q Consensus 368 ~~~~nla~~~~~~~~~~~A~~~~~~al~~ 396 (435)
..+...|.-.-+.++|++|+.+|..+++.
T Consensus 7 ~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 7 AELIRLALEKEEEGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34556677777789999999999998865
No 443
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=53.05 E-value=2e+02 Score=29.83 Aligned_cols=105 Identities=10% Similarity=-0.065 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHH-----------H---------HHHHHHHHHHhHHHHH
Q 013843 317 AAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQ-----------K---------LVKSLRVSCWLNSAAC 376 (435)
Q Consensus 317 ~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~-----------~---------~~~~~~~~~~~nla~~ 376 (435)
+...++.....-.+.|++......|++++-.+....++..... . ....-...+++.-|..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 3345555556666788888888888888765433221100000 0 0000001112222222
Q ss_pred HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHH
Q 013843 377 CLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAE 421 (435)
Q Consensus 377 ~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~ 421 (435)
-...|++..|...+++..+--|....+-.+.......+|+.+.+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 333567777777777777666777777777777777777777666
No 444
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=52.30 E-value=45 Score=26.87 Aligned_cols=40 Identities=18% Similarity=0.265 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcc
Q 013843 311 NQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE 350 (435)
Q Consensus 311 ~~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~ 350 (435)
.+++........+.|..+...|++++|..+|-+||...|.
T Consensus 56 ~~~~e~~Fl~qV~lGE~L~~~G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 56 PEEMERFFLQQVQLGEQLLAQGDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 3455566777888999999999999999999999999875
No 445
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=51.69 E-value=39 Score=19.36 Aligned_cols=27 Identities=19% Similarity=0.311 Sum_probs=20.0
Q ss_pred HHhHHHHHHHHccCHHHHHHHHHHHHh
Q 013843 369 CWLNSAACCLKLKDYQGAIELCSKVLD 395 (435)
Q Consensus 369 ~~~nla~~~~~~~~~~~A~~~~~~al~ 395 (435)
.|..+-.++.+.|+++.|...++...+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 356667778888888888888777655
No 446
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.59 E-value=1.6e+02 Score=25.54 Aligned_cols=99 Identities=15% Similarity=0.047 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHH-hhCC
Q 013843 320 RKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVL-DCDC 398 (435)
Q Consensus 320 ~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al-~~~p 398 (435)
.....|....++|+-..|+..|.++-.-.+. +.. .+-.+.+.-|..+.-.+.|+....-.+..- .-+|
T Consensus 96 A~mr~at~~a~kgdta~AV~aFdeia~dt~~-P~~----------~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~ 164 (221)
T COG4649 96 ARMRAATLLAQKGDTAAAVAAFDEIAADTSI-PQI----------GRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNP 164 (221)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHhccCCC-cch----------hhHHHHHHHHHHHhccccHHHHHHHhhhccCCCCh
Confidence 3445667777888888888888876553322 111 111234444555556666666443332211 1233
Q ss_pred CCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 013843 399 HNVKALYRRAQAYMEIADLILAELDIKKAIE 429 (435)
Q Consensus 399 ~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~ 429 (435)
-...+--.+|.+-++.|++..|+.+|.+...
T Consensus 165 mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 165 MRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 3344455567777788888888888877654
No 447
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=51.48 E-value=78 Score=30.86 Aligned_cols=47 Identities=19% Similarity=0.057 Sum_probs=42.1
Q ss_pred ccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHH
Q 013843 380 LKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKK 426 (435)
Q Consensus 380 ~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~ 426 (435)
....-+|+-..+.++..+|.|......+...|..+|-...|...|..
T Consensus 196 ~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 196 SEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 34467888899999999999999999999999999999999998864
No 448
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=51.10 E-value=95 Score=22.69 Aligned_cols=27 Identities=11% Similarity=-0.001 Sum_probs=16.2
Q ss_pred HhHHHHHHHHccCHHHHHHHHHHHHhh
Q 013843 370 WLNSAACCLKLKDYQGAIELCSKVLDC 396 (435)
Q Consensus 370 ~~nla~~~~~~~~~~~A~~~~~~al~~ 396 (435)
+...|.-.=+.|+|++|+.+|..+++.
T Consensus 9 ~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 9 FARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 444455555566777777776666653
No 449
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=50.47 E-value=1.8e+02 Score=29.22 Aligned_cols=88 Identities=14% Similarity=0.199 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhccc-
Q 013843 338 GKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIAD- 416 (435)
Q Consensus 338 ~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~- 416 (435)
+++|++.++.+.. +...-++.....+..+-.+.+. .+-..|++.|..||+.+|..+.-.+..-+.|.+..+
T Consensus 291 nqhFQ~~v~sLEe-------e~a~erqqlvetH~~RV~AmlN-drrR~Ale~ylaALqa~pprp~~Vl~aLkrYvRAEqK 362 (615)
T KOG3540|consen 291 NQHFQKTVSSLEE-------EAARERQQLVETHEARVEAMLN-DRRRDALENYLAALQADPPRPHRVLQALKRYVRAEQK 362 (615)
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 3456666555432 2223333344445555444432 234679999999999999887555544444444333
Q ss_pred -HHHHHHHHHHHHHhCCC
Q 013843 417 -LILAELDIKKAIEADPQ 433 (435)
Q Consensus 417 -~~eA~~~~~~al~l~P~ 433 (435)
-.--+..|+.++..||.
T Consensus 363 dr~HTlrhyqHv~~vDpk 380 (615)
T KOG3540|consen 363 DRMHTLRHYQHVLAVDPK 380 (615)
T ss_pred HHHHHHHHHHHHHhcChH
Confidence 33467889999988885
No 450
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=49.52 E-value=72 Score=24.96 Aligned_cols=36 Identities=28% Similarity=0.369 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 013843 312 QGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADC 347 (435)
Q Consensus 312 ~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~ 347 (435)
.-+.+++......|-..+-.|+|..|.+...++-+.
T Consensus 53 ~rr~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~ 88 (108)
T PF07219_consen 53 RRRRRKAQRALSRGLIALAEGDWQRAEKLLAKAAKL 88 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 346778888899999999999999999999999765
No 451
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=49.41 E-value=38 Score=19.30 Aligned_cols=26 Identities=19% Similarity=0.199 Sum_probs=18.0
Q ss_pred HhHHHHHHHHccCHHHHHHHHHHHHh
Q 013843 370 WLNSAACCLKLKDYQGAIELCSKVLD 395 (435)
Q Consensus 370 ~~nla~~~~~~~~~~~A~~~~~~al~ 395 (435)
|+.+-.+|.+.+++++|...+.+..+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44555667777777777777777654
No 452
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=48.66 E-value=1.1e+02 Score=29.61 Aligned_cols=70 Identities=11% Similarity=0.013 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHH
Q 013843 313 GKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIEL 389 (435)
Q Consensus 313 ~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~ 389 (435)
..-..+..+...|+.++..++|+.|...|..|..+...... ....-...+++..|..+++++++..++..
T Consensus 36 ~~~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~G-------e~~~e~~eal~~YGkslLela~~e~~VL~ 105 (400)
T KOG4563|consen 36 QKEKTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYG-------EKHLETFEALFLYGKSLLELAKEESQVLG 105 (400)
T ss_pred hHHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhh-------hhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45677889999999999999999999999999998754321 11122334556667777777776665543
No 453
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=48.45 E-value=41 Score=20.04 Aligned_cols=27 Identities=15% Similarity=0.235 Sum_probs=20.9
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 013843 382 DYQGAIELCSKVLDCDCHNVKALYRRAQ 409 (435)
Q Consensus 382 ~~~~A~~~~~~al~~~p~~~~a~~~~a~ 409 (435)
+++.|...|++.+...| +++.|.+.|.
T Consensus 2 E~dRAR~IyeR~v~~hp-~~k~WikyAk 28 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHP-EVKNWIKYAK 28 (32)
T ss_pred hHHHHHHHHHHHHHhCC-CchHHHHHHH
Confidence 57888889999988886 5777776654
No 454
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=48.29 E-value=28 Score=34.27 Aligned_cols=57 Identities=14% Similarity=-0.003 Sum_probs=49.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHH
Q 013843 323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVL 394 (435)
Q Consensus 323 ~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 394 (435)
.....|++.++.+.|+.+--+.|.++|..... |+..|.|+..+.+|.+|-..+.-|.
T Consensus 233 klv~CYL~~rkpdlALnh~hrsI~lnP~~frn---------------HLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 233 KLVTCYLRMRKPDLALNHSHRSINLNPSYFRN---------------HLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred HHHHhhhhcCCCchHHHHHhhhhhcCcchhhH---------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999876533 8889999999999999988776654
No 455
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=48.17 E-value=42 Score=30.92 Aligned_cols=101 Identities=16% Similarity=0.047 Sum_probs=61.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCC------
Q 013843 327 LLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHN------ 400 (435)
Q Consensus 327 ~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~------ 400 (435)
.++..++--.|+..|...+.-.|.+...--.... + .-..|+-...|+. .-....|.+++++||-.....
T Consensus 4 ~L~D~~e~L~~L~~~~~~~~~~~~NL~~l~~~a~-~---lEk~~~~Fs~~~s-~~~~~n~~e~~d~ALm~Ae~r~D~~~I 78 (368)
T COG5091 4 ALYDEKEPLKALHLYDEILKGSPTNLTALIFKAA-C---LEKLYFGFSDWHS-DATMENAKELLDKALMTAEGRGDRSKI 78 (368)
T ss_pred chhcccchHHHhhhhhhhhccCCcceeEEeehhh-h---HHHHHhhhhhhhc-ccChhhHHHHHHHHHHhhhccCCccee
Confidence 3455566667788887777665554321000000 0 0011222333332 234677889999998664221
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC
Q 013843 401 VKALYRRAQAYMEIADLILAELDIKKAIEADP 432 (435)
Q Consensus 401 ~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P 432 (435)
--+-++++.+|+.+.+|+-|..+|.+|+.+--
T Consensus 79 G~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~ 110 (368)
T COG5091 79 GLVNFRYFVHFFNIKDYELAQSYFKKAKNLYV 110 (368)
T ss_pred eeehhhhHHHhhhHHHHHHHHHHHHHHHHHhh
Confidence 24568899999999999999999999998743
No 456
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=47.83 E-value=92 Score=29.66 Aligned_cols=65 Identities=17% Similarity=0.114 Sum_probs=50.3
Q ss_pred HHHHHhHHHHHHHHccCHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q 013843 366 RVSCWLNSAACCLKLKDYQGAIELCSKVLDC----DCHNVKALYRRAQAYMEIADLILAELDIKKAIEA 430 (435)
Q Consensus 366 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~----~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l 430 (435)
....++..|.-.+..|+|..|-.+.-.-..+ ++++..|++..-.+-.-+.+|+-|++++.+.-+.
T Consensus 128 ~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~rLre~ 196 (432)
T KOG2758|consen 128 RIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDLTRLREY 196 (432)
T ss_pred HHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4567888999999999999998765544333 3456778877766777889999999999887665
No 457
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.38 E-value=84 Score=30.94 Aligned_cols=27 Identities=19% Similarity=0.407 Sum_probs=25.0
Q ss_pred HhHHHHHHHHccCHHHHHHHHHHHHhh
Q 013843 370 WLNSAACCLKLKDYQGAIELCSKVLDC 396 (435)
Q Consensus 370 ~~nla~~~~~~~~~~~A~~~~~~al~~ 396 (435)
..++|.||-.+++|++|+.+|+++|.+
T Consensus 25 ~V~~gl~~dE~~~~e~a~~~Ye~gl~~ 51 (560)
T KOG2709|consen 25 SVEQGLCYDEVNDWENALAMYEKGLNL 51 (560)
T ss_pred HHHhhcchhhhcCHHHHHHHHHHHHHH
Confidence 568999999999999999999999975
No 458
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=46.96 E-value=1e+02 Score=22.25 Aligned_cols=18 Identities=28% Similarity=0.383 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHhhCCCC
Q 013843 383 YQGAIELCSKVLDCDCHN 400 (435)
Q Consensus 383 ~~~A~~~~~~al~~~p~~ 400 (435)
|.+|++.|.++++..|+.
T Consensus 29 Y~~aie~l~~~~k~e~~~ 46 (75)
T cd02678 29 YQHALEYFMHALKYEKNP 46 (75)
T ss_pred HHHHHHHHHHHHhhCCCH
Confidence 445555555555556643
No 459
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=44.95 E-value=64 Score=31.20 Aligned_cols=56 Identities=16% Similarity=0.170 Sum_probs=45.9
Q ss_pred HHHhHHHHHHHHccCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHhcccHHHHHHH
Q 013843 368 SCWLNSAACCLKLKDYQGAIELCSKVLDCD--------CHNVKALYRRAQAYMEIADLILAELD 423 (435)
Q Consensus 368 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~--------p~~~~a~~~~a~~~~~lg~~~eA~~~ 423 (435)
.-+...|+-++.++++.+|.+.+..|..+. -.+..++|..|.+++.+++++.+.-.
T Consensus 42 e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~ 105 (400)
T KOG4563|consen 42 EELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLG 105 (400)
T ss_pred HHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 335677888899999999999999998763 23568899999999999998876643
No 460
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.93 E-value=2e+02 Score=32.05 Aligned_cols=58 Identities=14% Similarity=-0.011 Sum_probs=48.0
Q ss_pred HHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 013843 367 VSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIE 429 (435)
Q Consensus 367 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~ 429 (435)
..+|..+|.+.+..+...+|++.|-+| +++..|...-.+..+.|.|++-..++..|-+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRk 1161 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARK 1161 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 356889999999999999999988665 5677788888888889999998888877754
No 461
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=44.55 E-value=1.1e+02 Score=28.08 Aligned_cols=56 Identities=20% Similarity=0.175 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHH-ccCHHHHHHHHHHHHhh
Q 013843 334 YERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLK-LKDYQGAIELCSKVLDC 396 (435)
Q Consensus 334 y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-~~~~~~A~~~~~~al~~ 396 (435)
-++|...|++|+++....... .+.++..+.+|.+..|+. +++.++|+...++|+.-
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~p-------t~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~ 200 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPP-------THPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE 200 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCC-------CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 457899999999875432211 124556677788776665 79999999888877653
No 462
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.46 E-value=45 Score=34.45 Aligned_cols=51 Identities=20% Similarity=0.165 Sum_probs=37.3
Q ss_pred HHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q 013843 375 ACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEA 430 (435)
Q Consensus 375 ~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l 430 (435)
.+.+++++++.|.+... +.++..-|-.+|.+.+..+++..|.++|.+|..+
T Consensus 645 elal~lgrl~iA~~la~-----e~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 645 ELALKLGRLDIAFDLAV-----EANSEVKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred hhhhhcCcHHHHHHHHH-----hhcchHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 34567788777765333 3356667888899999999999999999887643
No 463
>PF13041 PPR_2: PPR repeat family
Probab=43.81 E-value=87 Score=20.15 Aligned_cols=39 Identities=8% Similarity=0.024 Sum_probs=28.4
Q ss_pred HHHhHHHHHHHHccCHHHHHHHHHHHHhhC-CCCHHHHHH
Q 013843 368 SCWLNSAACCLKLKDYQGAIELCSKVLDCD-CHNVKALYR 406 (435)
Q Consensus 368 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~ 406 (435)
..|+.+=.+|.+.+++++|.+.+++..+.. +-+...|..
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~ 43 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNI 43 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 447777788999999999999999998764 224444433
No 464
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=43.25 E-value=1.8e+02 Score=27.94 Aligned_cols=91 Identities=12% Similarity=0.076 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH----------HhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCH--HH
Q 013843 336 RAGKKYNKAAD----------CVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNV--KA 403 (435)
Q Consensus 336 ~A~~~y~~al~----------~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~--~a 403 (435)
+|.+.+++||+ .........+.....--....-+-..+|.|-.++|+..+|++.++...+--|-.. ..
T Consensus 234 ~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lni 313 (556)
T KOG3807|consen 234 DAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNI 313 (556)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHH
Q ss_pred HHHHHHHHHhcccHHHHHHHHHH
Q 013843 404 LYRRAQAYMEIADLILAELDIKK 426 (435)
Q Consensus 404 ~~~~a~~~~~lg~~~eA~~~~~~ 426 (435)
+-++-.+++.++-|.+....+-+
T Consensus 314 heNLiEalLE~QAYADvqavLak 336 (556)
T KOG3807|consen 314 HENLLEALLELQAYADVQAVLAK 336 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
No 465
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=42.65 E-value=50 Score=32.29 Aligned_cols=45 Identities=24% Similarity=0.233 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhccc------------HHHHHHHHHHHHH
Q 013843 383 YQGAIELCSKVLDCDCHNVKALYRRAQAYMEIAD------------LILAELDIKKAIE 429 (435)
Q Consensus 383 ~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~------------~~eA~~~~~~al~ 429 (435)
...|+.++++|.. .+.+..|.++|.+++.+|+ |.+|...+++|-.
T Consensus 334 ~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~ 390 (404)
T PF12753_consen 334 IKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANK 390 (404)
T ss_dssp HHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhh
Confidence 4567777777765 4678999999999999987 5667777766643
No 466
>PHA02122 hypothetical protein
Probab=42.47 E-value=42 Score=22.54 Aligned_cols=19 Identities=26% Similarity=0.389 Sum_probs=16.3
Q ss_pred CCCEEEEEEEEEEcCCcEEe
Q 013843 64 FGDEVTIHYVGTLLDGTKFD 83 (435)
Q Consensus 64 ~gd~V~v~y~~~~~~g~~~~ 83 (435)
.||.|.|+|.... +|+.|-
T Consensus 40 ~gd~v~vn~e~~~-ng~l~i 58 (65)
T PHA02122 40 DGDEVIVNFELVV-NGKLII 58 (65)
T ss_pred CCCEEEEEEEEEE-CCEEEE
Confidence 7899999999886 888764
No 467
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=42.29 E-value=3.3e+02 Score=26.37 Aligned_cols=116 Identities=22% Similarity=0.142 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHH-------------------HHHHHHhccCCCCChH------------HHHHH
Q 013843 314 KIEAAGRKKEEGNLLFKNGKYERAGKKY-------------------NKAADCVSEDGSFVDD------------EQKLV 362 (435)
Q Consensus 314 ~~~~a~~~~~~g~~~~~~g~y~~A~~~y-------------------~~al~~~~~~~~~~~~------------~~~~~ 362 (435)
.-..-+...+.|+.+.+.|++..-.... +..++..+......++ ..+..
T Consensus 44 i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~KakaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekR 123 (411)
T KOG1463|consen 44 IKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKR 123 (411)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhH
Confidence 3344556778888888888876543222 2223333332222211 12344
Q ss_pred HHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHh----hCC--CCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 013843 363 KSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD----CDC--HNVKALYRRAQAYMEIADLILAELDIKKAIE 429 (435)
Q Consensus 363 ~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~----~~p--~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~ 429 (435)
..++..+-..+...|+..++|.+|+......+. +|. .-...+..-..+|+.+.+..+|+..+-.|-.
T Consensus 124 tFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART 196 (411)
T KOG1463|consen 124 TFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSART 196 (411)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHH
Confidence 556667778889999999999999998887764 332 2356777788899999999999888876643
No 468
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=41.99 E-value=1.9e+02 Score=25.35 Aligned_cols=55 Identities=24% Similarity=0.122 Sum_probs=40.0
Q ss_pred HHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcc-----cHHHHHHHHHHHHHhC
Q 013843 374 AACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIA-----DLILAELDIKKAIEAD 431 (435)
Q Consensus 374 a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg-----~~~eA~~~~~~al~l~ 431 (435)
+..+.-+++.+.|+++..+|-+++ ++.+.-+..+.|. +| +-++|..+-++|+++.
T Consensus 175 ~~~~~~~kDMdka~qfa~kACel~--~~~aCAN~SrMyk-lGDGv~Kde~~Aekyk~rA~e~~ 234 (248)
T KOG4014|consen 175 AELGSLSKDMDKALQFAIKACELD--IPQACANVSRMYK-LGDGVPKDEDQAEKYKDRAKEIM 234 (248)
T ss_pred hhhhhhhHhHHHHHHHHHHHHhcC--ChHHHhhHHHHHH-ccCCCCccHHHHHHHHHHHHHHH
Confidence 334445578889999999998886 5777777776664 33 4678888888888763
No 469
>PF09122 DUF1930: Domain of unknown function (DUF1930); InterPro: IPR015206 This entry represents a domain found in 3-mercaptopyruvate sulphurtransferase which has no known function. This domain adopts a structure consisting of a four-stranded antiparallel beta-sheet and an alpha-helix, arranged in a beta(2)-alpha-beta(2) fashion, and bearing a remarkable structural similarity to the FK506-binding protein class of peptidylprolyl cis/trans-isomerase []. ; PDB: 1OKG_A.
Probab=41.55 E-value=42 Score=23.29 Aligned_cols=23 Identities=22% Similarity=0.150 Sum_probs=18.4
Q ss_pred hHHHHHHcccccCcEEEEEEcCC
Q 013843 248 AGLDRVAATMKKEEWAIVTINHE 270 (435)
Q Consensus 248 ~g~~~~l~~m~~Ge~~~i~~~~~ 270 (435)
+.+..|+..|+.||++.+.+.+.
T Consensus 35 ~El~sA~~HlH~GEkA~V~FkS~ 57 (68)
T PF09122_consen 35 AELKSALVHLHIGEKAQVFFKSQ 57 (68)
T ss_dssp HHHHHHHTT-BTT-EEEEEETTS
T ss_pred HHHHHHHHHhhcCceeEEEEecC
Confidence 67889999999999999998764
No 470
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=41.36 E-value=2.5e+02 Score=34.31 Aligned_cols=67 Identities=19% Similarity=0.185 Sum_probs=60.9
Q ss_pred HHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Q 013843 363 KSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEAD 431 (435)
Q Consensus 363 ~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~ 431 (435)
......+|++.|..-.+.|+++.|..+.-.|.+.. -++++..+|+.+-..|+-..|+..+++.++++
T Consensus 1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 34567899999999999999999999999999988 58899999999999999999999999999664
No 471
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=40.63 E-value=1.2e+02 Score=28.86 Aligned_cols=64 Identities=23% Similarity=0.174 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHH--------HHHHHHHHHhcccHHHHHHHHHHH
Q 013843 363 KSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKA--------LYRRAQAYMEIADLILAELDIKKA 427 (435)
Q Consensus 363 ~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a--------~~~~a~~~~~lg~~~eA~~~~~~a 427 (435)
.+..+.+...+|..|.+.++|..|.. .-.++.++.....+ +.++|.+|+..++..+|..+..++
T Consensus 99 eEqv~~irl~LAsiYE~Eq~~~~aaq-~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRa 170 (399)
T KOG1497|consen 99 EEQVASIRLHLASIYEKEQNWRDAAQ-VLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRA 170 (399)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHH-HHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
No 472
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=40.56 E-value=2e+02 Score=33.13 Aligned_cols=37 Identities=22% Similarity=0.310 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccC
Q 013843 315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSED 351 (435)
Q Consensus 315 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~ 351 (435)
-...+..+-.|+.++..|.|..|++.|.+|+......
T Consensus 239 r~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~ 275 (1185)
T PF08626_consen 239 RCKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSS 275 (1185)
T ss_pred hhhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhc
Confidence 4567788899999999999999999999999976553
No 473
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=40.16 E-value=1e+02 Score=32.62 Aligned_cols=53 Identities=15% Similarity=0.001 Sum_probs=37.6
Q ss_pred HHHHccCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 013843 376 CCLKLKDYQGAIELCSKVLDCD--CHNVKALYRRAQAYMEIADLILAELDIKKAI 428 (435)
Q Consensus 376 ~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al 428 (435)
.+.++++|-...+.++..-.-+ ..-..|+.++|..+..+.+|++|.++|.++-
T Consensus 769 lr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~ 823 (1189)
T KOG2041|consen 769 LRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG 823 (1189)
T ss_pred HHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4567778777666554322111 1225789999999999999999999998753
No 474
>PF13041 PPR_2: PPR repeat family
Probab=39.97 E-value=72 Score=20.56 Aligned_cols=31 Identities=13% Similarity=0.025 Sum_probs=26.0
Q ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q 013843 400 NVKALYRRAQAYMEIADLILAELDIKKAIEA 430 (435)
Q Consensus 400 ~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l 430 (435)
+.-.|..+-.+|.+.|++++|.+.|++..+.
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 4556777888999999999999999988764
No 475
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=39.76 E-value=2.5e+02 Score=26.20 Aligned_cols=63 Identities=21% Similarity=0.157 Sum_probs=41.4
Q ss_pred HhHHHHHHHHccCHH-HHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC
Q 013843 370 WLNSAACCLKLKDYQ-GAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIEADP 432 (435)
Q Consensus 370 ~~nla~~~~~~~~~~-~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~l~P 432 (435)
+.-+-.....++++. .-++++..+|..+.+|--||-.|--++...+.|+.-+++..+.|+.|-
T Consensus 115 WHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di 178 (318)
T KOG0530|consen 115 WHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDI 178 (318)
T ss_pred HHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhh
Confidence 333334444555666 667777777777777777777777777777777777777777666553
No 476
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=39.08 E-value=1.5e+02 Score=31.56 Aligned_cols=89 Identities=18% Similarity=0.190 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHH
Q 013843 315 IEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVL 394 (435)
Q Consensus 315 ~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 394 (435)
.+....-..-|..+-..|+|+.|+.+|-+|--+. ..-.+-+..++|.+|+...+..-
T Consensus 703 ~evv~lee~wg~hl~~~~q~daainhfiea~~~~-----------------------kaieaai~akew~kai~ildniq 759 (1636)
T KOG3616|consen 703 EEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLI-----------------------KAIEAAIGAKEWKKAISILDNIQ 759 (1636)
T ss_pred HHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHH-----------------------HHHHHHhhhhhhhhhHhHHHHhh
Q ss_pred hhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 013843 395 DCDCHNVKALYRRAQAYMEIADLILAELDIKKA 427 (435)
Q Consensus 395 ~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~a 427 (435)
..+ .-...|-..|.-|..+|+|+.|.+.|-++
T Consensus 760 dqk-~~s~yy~~iadhyan~~dfe~ae~lf~e~ 791 (1636)
T KOG3616|consen 760 DQK-TASGYYGEIADHYANKGDFEIAEELFTEA 791 (1636)
T ss_pred hhc-cccccchHHHHHhccchhHHHHHHHHHhc
No 477
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=38.93 E-value=3.3e+02 Score=33.29 Aligned_cols=100 Identities=15% Similarity=0.049 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHh
Q 013843 316 EAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD 395 (435)
Q Consensus 316 ~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 395 (435)
..++-+.+.|...-+.|+++.|....-.|.+... ..++..+|....+.|+-..|+...++.++
T Consensus 1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~-----------------~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~ 1730 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKESRL-----------------PEIVLERAKLLWQTGDELNALSVLQEILS 1730 (2382)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHhhhhccc-----------------chHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 3455666777777788999999888888777652 25688999999999999999999999996
Q ss_pred hC-CC----------CH------HHHHHHHHHHHhcccH--HHHHHHHHHHHHhCC
Q 013843 396 CD-CH----------NV------KALYRRAQAYMEIADL--ILAELDIKKAIEADP 432 (435)
Q Consensus 396 ~~-p~----------~~------~a~~~~a~~~~~lg~~--~eA~~~~~~al~l~P 432 (435)
.+ |+ .. ++.+..+.-..+.+++ .+-+..|..|.++.|
T Consensus 1731 ~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ 1786 (2382)
T KOG0890|consen 1731 KNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILP 1786 (2382)
T ss_pred hhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcc
Confidence 64 22 11 2344444444444443 445677888888887
No 478
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=38.78 E-value=1.4e+02 Score=27.99 Aligned_cols=102 Identities=18% Similarity=0.190 Sum_probs=61.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHh-hCCCCHH
Q 013843 324 EGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLD-CDCHNVK 402 (435)
Q Consensus 324 ~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~-~~p~~~~ 402 (435)
.|.......+|..|..+|-+|++-..... .+.+.+..++ |.-++...+...+--+|+-.-.-+++ ++.....
T Consensus 212 sGIlhcdd~dyktA~SYF~Ea~Egft~l~----~d~kAc~sLk---YmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~I~ 284 (421)
T COG5159 212 SGILHCDDRDYKTASSYFIEALEGFTLLK----MDVKACVSLK---YMLLSKIMLNRREEVKAVLRNKNTLKHYDDRMIR 284 (421)
T ss_pred ccceeeccccchhHHHHHHHHHhcccccc----chHHHHHHHH---HHHHHHHHHhhHHHHHHHHccchhHhhhhhhhHH
Confidence 34555667799999999999998654321 2234444444 33344443333333333333444554 5566677
Q ss_pred HHHHHHHHHH--hcccHHHHHHHHHHHHHhCC
Q 013843 403 ALYRRAQAYM--EIADLILAELDIKKAIEADP 432 (435)
Q Consensus 403 a~~~~a~~~~--~lg~~~eA~~~~~~al~l~P 432 (435)
|+...+.++- .+.+|..|++.|+.-+.-||
T Consensus 285 am~avaea~~NRsL~df~~aL~qY~~el~~D~ 316 (421)
T COG5159 285 AMLAVAEAFGNRSLKDFSDALAQYSDELHQDS 316 (421)
T ss_pred HHHHHHHHhCCCcHhhHHHHHHHhhHHhccCH
Confidence 8877787774 45688889988887766554
No 479
>PRK11619 lytic murein transglycosylase; Provisional
Probab=38.37 E-value=2.6e+02 Score=29.80 Aligned_cols=53 Identities=15% Similarity=0.077 Sum_probs=41.7
Q ss_pred HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 013843 377 CLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIE 429 (435)
Q Consensus 377 ~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~ 429 (435)
-+..++|+.+...+...-.-..+.....|.+|.++..+|+.++|...|+++..
T Consensus 322 Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 322 ALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 34678888877777664433345678999999999999999999999999743
No 480
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=37.90 E-value=1.1e+02 Score=31.22 Aligned_cols=61 Identities=8% Similarity=0.024 Sum_probs=51.4
Q ss_pred HHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 013843 368 SCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKAIE 429 (435)
Q Consensus 368 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~al~ 429 (435)
..|+.+-.-+. .+.++++...|++.+..-|..+.+|..-....++..+|+.-...|.+||.
T Consensus 21 ~sw~~lire~q-t~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLv 81 (656)
T KOG1914|consen 21 DSWSQLIREAQ-TQPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLV 81 (656)
T ss_pred HHHHHHHHHHc-cCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 44665544443 44899999999999999999999999999999999999999999988875
No 481
>PF01346 FKBP_N: Domain amino terminal to FKBP-type peptidyl-prolyl isomerase; InterPro: IPR000774 Peptidyl-prolyl cis-trans isomerase (PPIase) catalyses the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides [, ]. This alpha helical domain is found at the N terminus of proteins belonging to the FKBP-type peptidyl-prolyl cis-trans isomerase(IPR001179 from INTERPRO) family. Peptidyl-prolyl cis-trans isomerase has been shown to accelerate the refolding of several proteins in vitro [, , ]; the FKPB-type enzymes probably act in the folding of extracytoplasmic proteins.; GO: 0006457 protein folding; PDB: 1FD9_A 2VCD_A 3OE2_A 2UZ5_A 3B09_A 1Q6H_B 1Q6I_B 1Q6U_A.
Probab=37.85 E-value=23 Score=28.48 Aligned_cols=17 Identities=24% Similarity=0.218 Sum_probs=12.2
Q ss_pred cCCcceeecCCCeEEEE
Q 013843 36 KVGEERGLGNSGIKKKL 52 (435)
Q Consensus 36 ~~~~~~~~~~~g~~~~~ 52 (435)
...+.+.+|+|||+|+|
T Consensus 108 ~k~~GV~~t~SGLqY~V 124 (124)
T PF01346_consen 108 AKKEGVKTTESGLQYKV 124 (124)
T ss_dssp HTSTTEEE-TTS-EEEE
T ss_pred cCCCCCEECCCCCeeeC
Confidence 45567899999999997
No 482
>PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.
Probab=37.35 E-value=1.1e+02 Score=30.01 Aligned_cols=68 Identities=18% Similarity=0.165 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHhccC--CCCChHHHHHHHHHHHHHHhHHHHHHHHc---------cCHHHHHHHHHHHHhhCCCCHH
Q 013843 335 ERAGKKYNKAADCVSED--GSFVDDEQKLVKSLRVSCWLNSAACCLKL---------KDYQGAIELCSKVLDCDCHNVK 402 (435)
Q Consensus 335 ~~A~~~y~~al~~~~~~--~~~~~~~~~~~~~~~~~~~~nla~~~~~~---------~~~~~A~~~~~~al~~~p~~~~ 402 (435)
..|+.+|+..+...... ......-......-...+++.+|.+|.++ +.+..++.+|+.++.....++.
T Consensus 266 ~~ai~~y~~fl~s~~~~~~~~~~~~~~~d~~~~~l~a~f~~arl~~K~~~~~~~~~~~~l~~sl~~y~~vv~y~~~~~~ 344 (371)
T PF12309_consen 266 SKAIKYYQKFLDSYKSPDSGKLPEKLDEDELRPYLYAYFHIARLYSKLITSDPKEQLENLEKSLEYYKWVVDYCEKHPE 344 (371)
T ss_pred HHHHHHHHHHHHHHcCCccccCCCCCcHHHHHHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHHHHHHHHHHHhChh
Confidence 56888888888875421 11111111222333456788999998876 5688899999988887666655
No 483
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=37.18 E-value=1.4e+02 Score=26.20 Aligned_cols=81 Identities=19% Similarity=0.059 Sum_probs=51.3
Q ss_pred CCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHc-----c--CHHHHHHHHHHHHhhCCCCHHHH
Q 013843 332 GKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKL-----K--DYQGAIELCSKVLDCDCHNVKAL 404 (435)
Q Consensus 332 g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~-----~--~~~~A~~~~~~al~~~p~~~~a~ 404 (435)
++...|++.|..+...+. ..+..++++.+..- . +..+|.+++.++-.++ +..+.
T Consensus 87 ~~l~~a~r~~~~aC~~n~-----------------~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aC 147 (248)
T KOG4014|consen 87 ASLSKAIRPMKIACDANI-----------------PQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEAC 147 (248)
T ss_pred cCHHHHHHHHHHHhccCC-----------------HHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHH
Confidence 356677777777766432 23455666665432 2 2678889999888775 56666
Q ss_pred HHHHHHHHhc------------------------ccHHHHHHHHHHHHHhC
Q 013843 405 YRRAQAYMEI------------------------ADLILAELDIKKAIEAD 431 (435)
Q Consensus 405 ~~~a~~~~~l------------------------g~~~eA~~~~~~al~l~ 431 (435)
|.+...|+.- .+.+.|.+.--+|.+++
T Consensus 148 f~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel~ 198 (248)
T KOG4014|consen 148 FLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACELD 198 (248)
T ss_pred HHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhcC
Confidence 6666555543 45677777777776664
No 484
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=36.96 E-value=1.6e+02 Score=21.15 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=10.9
Q ss_pred HHHHHHHccCHHHHHHHHHHHHh
Q 013843 373 SAACCLKLKDYQGAIELCSKVLD 395 (435)
Q Consensus 373 la~~~~~~~~~~~A~~~~~~al~ 395 (435)
.|..+-+.|++++|+.+|.++++
T Consensus 14 ~Av~~d~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 14 KALKADEAGDYEEALELYKKAIE 36 (77)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 33334444555555555555443
No 485
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=36.18 E-value=1.1e+02 Score=25.59 Aligned_cols=40 Identities=13% Similarity=0.144 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHhcc
Q 013843 311 NQGKIEAAGRKKEEGNLLFKNG-KYERAGKKYNKAADCVSE 350 (435)
Q Consensus 311 ~~~~~~~a~~~~~~g~~~~~~g-~y~~A~~~y~~al~~~~~ 350 (435)
.+++........+.|..+...| ++.+|..+|-+||...|.
T Consensus 83 ~~e~E~~Fl~eV~~GE~L~~~g~~~~ega~hf~nAl~Vc~q 123 (148)
T TIGR00985 83 PSEKEAFFLQEVQLGEELMAQGTNVDEGAVHFYNALKVYPQ 123 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCC
Confidence 4566667788889999999999 999999999999999875
No 486
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=35.91 E-value=3.8e+02 Score=34.24 Aligned_cols=68 Identities=13% Similarity=-0.088 Sum_probs=52.6
Q ss_pred HHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcc----c----HHHHHHHHHHHHHhC
Q 013843 364 SLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIA----D----LILAELDIKKAIEAD 431 (435)
Q Consensus 364 ~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg----~----~~eA~~~~~~al~l~ 431 (435)
...+..+.-.|.-+.+++++++|-+.|..|++++-...|+|+..|.-+..+= . -..|..+|-+|....
T Consensus 2809 ~q~aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~ 2884 (3550)
T KOG0889|consen 2809 RQKAEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLY 2884 (3550)
T ss_pred HHHHHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhccc
Confidence 4455667778999999999999999999999999888999998887665431 1 245777777776554
No 487
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=35.88 E-value=2.8e+02 Score=27.25 Aligned_cols=61 Identities=15% Similarity=0.025 Sum_probs=45.5
Q ss_pred HhHHHHHHHHccCHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHH--hcccHHHHHHHHHHHHHh
Q 013843 370 WLNSAACCLKLKDYQGAIELCSKVLDCDCHNV--KALYRRAQAYM--EIADLILAELDIKKAIEA 430 (435)
Q Consensus 370 ~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~--~a~~~~a~~~~--~lg~~~eA~~~~~~al~l 430 (435)
...++.-.+..++|..|...++..+..-|.+. ..+..++.+|. ..-+|.+|.+.+++.+..
T Consensus 134 ~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 134 EWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 45666777788999999999999988533333 45666666665 455789999999988764
No 488
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.51 E-value=2.5e+02 Score=29.39 Aligned_cols=75 Identities=20% Similarity=0.131 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccC---CCCChHH-HHHHHH-HHHHHHhHHHH-HHHHccCHHHHHHHHH
Q 013843 318 AGRKKEEGNLLFKNGKYERAGKKYNKAADCVSED---GSFVDDE-QKLVKS-LRVSCWLNSAA-CCLKLKDYQGAIELCS 391 (435)
Q Consensus 318 a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~---~~~~~~~-~~~~~~-~~~~~~~nla~-~~~~~~~~~~A~~~~~ 391 (435)
..+++++|+...+.+++..|.++|.+|-.+..-. ....+.+ ...+.. -+..-.+|+|. ||+..|++++|++.+.
T Consensus 666 ~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 666 EVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred hHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCHHHHHHHHH
Confidence 3467888888888899999988888885532110 0000111 111111 11122456654 7888888888766544
Q ss_pred H
Q 013843 392 K 392 (435)
Q Consensus 392 ~ 392 (435)
+
T Consensus 746 ~ 746 (794)
T KOG0276|consen 746 S 746 (794)
T ss_pred h
Confidence 3
No 489
>PF04010 DUF357: Protein of unknown function (DUF357); InterPro: IPR023140 This domain is found in a family of proteins, which have no known function.; PDB: 2OO2_A 2PMR_A.
Probab=35.36 E-value=1e+02 Score=22.48 Aligned_cols=38 Identities=21% Similarity=0.295 Sum_probs=31.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 013843 310 NNQGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADC 347 (435)
Q Consensus 310 ~~~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~ 347 (435)
...+.++.+..+.+.|..++++|++..|+..+.=+-..
T Consensus 27 ~a~~~~~mA~~Y~~D~~~fl~~gD~v~Ala~~sYa~Gw 64 (75)
T PF04010_consen 27 AAEEILEMAESYLEDGKYFLEKGDYVNALACFSYAHGW 64 (75)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 35678899999999999999999999999887655443
No 490
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=35.12 E-value=1.7e+02 Score=21.14 Aligned_cols=15 Identities=20% Similarity=-0.060 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHh
Q 013843 334 YERAGKKYNKAADCV 348 (435)
Q Consensus 334 y~~A~~~y~~al~~~ 348 (435)
..+|+.+..+|++.+
T Consensus 3 l~~Ai~lv~~Av~~D 17 (75)
T cd02684 3 LEKAIALVVQAVKKD 17 (75)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345666666665554
No 491
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=34.62 E-value=1.5e+02 Score=30.97 Aligned_cols=54 Identities=19% Similarity=0.160 Sum_probs=42.2
Q ss_pred HhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHH
Q 013843 370 WLNSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIK 425 (435)
Q Consensus 370 ~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~ 425 (435)
.+..|..+-..++.++|..+|++.+..+|+ .+++..|+-+.+.|-...|...++
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 45 MLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred HHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence 445566666777888888888888888887 677777888888888888887776
No 492
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=33.69 E-value=98 Score=21.47 Aligned_cols=19 Identities=26% Similarity=0.316 Sum_probs=9.8
Q ss_pred HHHHccCHHHHHHHHHHHH
Q 013843 376 CCLKLKDYQGAIELCSKVL 394 (435)
Q Consensus 376 ~~~~~~~~~~A~~~~~~al 394 (435)
-++.+|++++|.++..+..
T Consensus 32 gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 32 GLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHTT-HHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHH
Confidence 3555556666655555544
No 493
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=33.60 E-value=2.3e+02 Score=23.24 Aligned_cols=36 Identities=11% Similarity=0.085 Sum_probs=25.9
Q ss_pred HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 013843 377 CLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYM 412 (435)
Q Consensus 377 ~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~ 412 (435)
++..-+.+.|...|..+++..|++..++..+-+.+-
T Consensus 86 ~iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~lD 121 (139)
T PF12583_consen 86 WIAKLEPENAEQVYEELLEAHPDHLPAHLAMIQNLD 121 (139)
T ss_dssp HHTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHHH
T ss_pred HHHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHccC
Confidence 344445688999999999999999998877766554
No 494
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.58 E-value=2.2e+02 Score=28.13 Aligned_cols=39 Identities=21% Similarity=0.202 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcc
Q 013843 312 QGKIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSE 350 (435)
Q Consensus 312 ~~~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~ 350 (435)
+...+.+-...++|..+-..+++++|+.+|+++|.+.-.
T Consensus 16 r~ayk~A~~~V~~gl~~dE~~~~e~a~~~Ye~gl~~i~~ 54 (560)
T KOG2709|consen 16 RAAYKGAYASVEQGLCYDEVNDWENALAMYEKGLNLIVE 54 (560)
T ss_pred HHHHHHHHHHHHhhcchhhhcCHHHHHHHHHHHHHHHHh
Confidence 455677778888999999999999999999999998754
No 495
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.28 E-value=1.5e+02 Score=25.83 Aligned_cols=77 Identities=21% Similarity=0.353 Sum_probs=53.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHHHhhCCCCHH
Q 013843 323 EEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKVLDCDCHNVK 402 (435)
Q Consensus 323 ~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~ 402 (435)
..+..+...|-|+.-....+. |.- +. ..++..+.-.+|..-++.|+|..|...|.+... |...+.
T Consensus 137 raa~lLvD~gsy~dV~srvep-La~---d~----------n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~apr 201 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEP-LAG---DG----------NPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPR 201 (221)
T ss_pred HHHHHHhccccHHHHHHHhhh-ccC---CC----------ChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcH
Confidence 345666777777765443322 111 11 134567777899999999999999999999877 667778
Q ss_pred HHHHHHHHHHhc
Q 013843 403 ALYRRAQAYMEI 414 (435)
Q Consensus 403 a~~~~a~~~~~l 414 (435)
...+++++.+.+
T Consensus 202 nirqRAq~mldl 213 (221)
T COG4649 202 NIRQRAQIMLDL 213 (221)
T ss_pred HHHHHHHHHHHH
Confidence 888888877654
No 496
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=33.07 E-value=5.1e+02 Score=25.91 Aligned_cols=108 Identities=10% Similarity=-0.093 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHhHHHHHHHHccCHHHHHHHHHHH
Q 013843 314 KIEAAGRKKEEGNLLFKNGKYERAGKKYNKAADCVSEDGSFVDDEQKLVKSLRVSCWLNSAACCLKLKDYQGAIELCSKV 393 (435)
Q Consensus 314 ~~~~a~~~~~~g~~~~~~g~y~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 393 (435)
.+..++.....+..+...++|..|.+...+.+-.+..- -..++++.++.-+|..+.+-+.--.+.-..-++
T Consensus 269 ~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k~---------~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~ 339 (482)
T KOG4322|consen 269 YQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDKG---------CNEEMLHSVLLTIAEARESGDTACLNLPLALMF 339 (482)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---------hhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHH
Confidence 34556666778888888888888888888776554221 235667777888888887766655555554444
Q ss_pred Hhh----CCCC--HHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q 013843 394 LDC----DCHN--VKALYRRAQAYMEIADLILAELDIKKAIEA 430 (435)
Q Consensus 394 l~~----~p~~--~~a~~~~a~~~~~lg~~~eA~~~~~~al~l 430 (435)
+.. +-+. ..+-..+|..++.+|..+.|+..+..|+.+
T Consensus 340 ~~~~sey~ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~ 382 (482)
T KOG4322|consen 340 EFKRSEYSLDYLEANENLDLALEHLALGSPKAALPLLHTAVHL 382 (482)
T ss_pred HHHHHHhccchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhH
Confidence 433 2223 344567788889999999999999888753
No 497
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=33.01 E-value=1e+02 Score=22.15 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=11.7
Q ss_pred HHHHHHHccCHHHHHHHHHHHHh
Q 013843 373 SAACCLKLKDYQGAIELCSKVLD 395 (435)
Q Consensus 373 la~~~~~~~~~~~A~~~~~~al~ 395 (435)
.|.-.-+.|+|++|+.+|..+++
T Consensus 12 ~Av~~D~~g~~~~Al~~Y~~a~e 34 (75)
T cd02656 12 QAVKEDEDGNYEEALELYKEALD 34 (75)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 33333444555555555555554
No 498
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=32.46 E-value=2.7e+02 Score=24.37 Aligned_cols=45 Identities=16% Similarity=0.224 Sum_probs=32.4
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccH
Q 013843 372 NSAACCLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADL 417 (435)
Q Consensus 372 nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~ 417 (435)
....++++.|+|++|.+.+++... +|++.+--..+..+-...+.+
T Consensus 116 ~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~ 160 (200)
T cd00280 116 QAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPA 160 (200)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccccc
Confidence 444578899999999999999999 888776644444444444443
No 499
>PF05688 DUF824: Salmonella repeat of unknown function (DUF824); InterPro: IPR008542 This family consists of a series of repeated sequences (of around 180 residues) which are found in Salmonella typhimurium, Salmonella typhi and Escherichia coli. These repeats are almost always found with this entry. The repeats are associated with RatA and RatB, the coding sequences of which are found in the pathogeneicity island of Salmonella. The sequences may be determinants of pathogenicity [, ].
Probab=30.59 E-value=1e+02 Score=20.25 Aligned_cols=35 Identities=14% Similarity=0.331 Sum_probs=26.8
Q ss_pred CCCCCCCEEEEEEEEEEcCCcEEecccCCCCCeeEEeCCC
Q 013843 60 DTPEFGDEVTIHYVGTLLDGTKFDSTRDRYDPLTFKLGTG 99 (435)
Q Consensus 60 ~~~~~gd~V~v~y~~~~~~g~~~~~s~~~~~p~~~~lg~~ 99 (435)
.+++.|+.+.+..+.++.+|..+.. .|+.+..|.+
T Consensus 7 akaK~Ge~I~ltVt~kda~G~pv~n-----~~f~l~r~~~ 41 (47)
T PF05688_consen 7 AKAKVGETIPLTVTVKDANGNPVPN-----APFTLTRGDA 41 (47)
T ss_pred hheecCCeEEEEEEEECCCCCCcCC-----ceEEEEecCc
Confidence 5688999999999999998877654 4566665543
No 500
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=30.47 E-value=1.1e+02 Score=32.03 Aligned_cols=48 Identities=19% Similarity=0.116 Sum_probs=30.6
Q ss_pred HHHccCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 013843 377 CLKLKDYQGAIELCSKVLDCDCHNVKALYRRAQAYMEIADLILAELDIKKA 427 (435)
Q Consensus 377 ~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~a~~~~~lg~~~eA~~~~~~a 427 (435)
+...++|.+|....++--++- ...|+.-|+-+.+..+|+||.+.|.+|
T Consensus 783 Hve~~~W~eAFalAe~hPe~~---~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 783 HVETQRWDEAFALAEKHPEFK---DDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred eeecccchHhHhhhhhCcccc---ccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 444556666665554433332 345677777777888888888777765
Done!