BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013845
(435 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ECP|A Chain A, The Crystal Structure Of The E. Coli Maltodextrin
Phosphorylase Complex
pdb|2ECP|B Chain B, The Crystal Structure Of The E. Coli Maltodextrin
Phosphorylase Complex
Length = 796
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 98 DINSTSFWDVLLKKLHALYVFTRPFAMIGTIVGI-TSIAILPLQSFADLTPKYFMEFLKA 156
DIN + +D+ +K+LH + R + I+ + I P AD P+ F+ KA
Sbjct: 521 DINPQAIFDIQIKRLHE---YKRQHLNLLRILALYKEIRENPQ---ADRVPRVFLFGAKA 574
Query: 157 LLSAVLMNNYVGTVNQVADV 176
L N + +N+VADV
Sbjct: 575 APGYYLAKNIIFAINKVADV 594
>pdb|1AHP|A Chain A, Oligosaccharide Substrate Binding In Escherichia Coli
Maltodextrin Phsphorylase
pdb|1AHP|B Chain B, Oligosaccharide Substrate Binding In Escherichia Coli
Maltodextrin Phsphorylase
Length = 797
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 98 DINSTSFWDVLLKKLHALYVFTRPFAMIGTIVGI-TSIAILPLQSFADLTPKYFMEFLKA 156
DIN + +D+ +K+LH + R + I+ + I P AD P+ F+ KA
Sbjct: 522 DINPQAIFDIQIKRLHE---YKRQHLNLLRILALYKEIRENPQ---ADRVPRVFLFGAKA 575
Query: 157 LLSAVLMNNYVGTVNQVADV 176
L N + +N+VADV
Sbjct: 576 APGYYLAKNIIFAINKVADV 595
>pdb|1L5V|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With Glucose-1-Phosphate
pdb|1L5V|B Chain B, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With Glucose-1-Phosphate
pdb|1L5W|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltotetraose
pdb|1L5W|B Chain B, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltotetraose
pdb|1L6I|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltopentaose
pdb|1L6I|B Chain B, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltopentaose
pdb|2ASV|A Chain A, X-Ray Studies On Protein Complexes: Enzymatic Catalysis In
Crystals Of E. Coli Maltodextrin Phosphorylase (Malp)
pdb|2ASV|B Chain B, X-Ray Studies On Protein Complexes: Enzymatic Catalysis In
Crystals Of E. Coli Maltodextrin Phosphorylase (Malp)
pdb|2AV6|A Chain A, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AV6|B Chain B, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AW3|A Chain A, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AW3|B Chain B, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AZD|A Chain A, X-Ray Studies On Maltodextrin Phosphorylase (Malp)
Complexes: Recognition Of Substrates And Catalytic
Mechanism Of Phosphorylase Family
pdb|2AZD|B Chain B, X-Ray Studies On Maltodextrin Phosphorylase (Malp)
Complexes: Recognition Of Substrates And Catalytic
Mechanism Of Phosphorylase Family
Length = 796
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 12/106 (11%)
Query: 72 RNCKPFNKYRVAVTLQQQGCASNNEDDINSTSFWDVLLKKLHALYVFTRPFAMIGTIVGI 131
R K NK R+A ++ + +IN + +D+ +K+LH + R + I+ +
Sbjct: 500 REIKQANKVRLAEFVKVRTGI-----EINPQAIFDIQIKRLHE---YKRQHLNLLHILAL 551
Query: 132 -TSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADV 176
I P AD P+ F+ KA L N + +N+VADV
Sbjct: 552 YKEIRENPQ---ADRVPRVFLFGAKAAPGYYLAKNIIFAINKVADV 594
>pdb|1QM5|A Chain A, Phosphorylase Recognition And Phosphorylysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
pdb|1QM5|B Chain B, Phosphorylase Recognition And Phosphorylysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
pdb|1E4O|A Chain A, Phosphorylase Recognition And Phosphorolysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
pdb|1E4O|B Chain B, Phosphorylase Recognition And Phosphorolysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
Length = 796
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 12/106 (11%)
Query: 72 RNCKPFNKYRVAVTLQQQGCASNNEDDINSTSFWDVLLKKLHALYVFTRPFAMIGTIVGI 131
R K NK R+A ++ + +IN + +D+ +K+LH + R + I+ +
Sbjct: 500 REIKQANKVRLAEFVKVRTGI-----EINPQAIFDIQIKRLHE---YKRQHLNLLHILAL 551
Query: 132 -TSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADV 176
I P AD P+ F+ KA L N + +N+VADV
Sbjct: 552 YKEIRENPQ---ADRVPRVFLFGAKAAPGYYLAKNIIFAINKVADV 594
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.139 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,846,070
Number of Sequences: 62578
Number of extensions: 383257
Number of successful extensions: 1013
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1009
Number of HSP's gapped (non-prelim): 4
length of query: 435
length of database: 14,973,337
effective HSP length: 102
effective length of query: 333
effective length of database: 8,590,381
effective search space: 2860596873
effective search space used: 2860596873
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)