Query 013845
Match_columns 435
No_of_seqs 308 out of 2107
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 07:58:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013845.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013845hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02878 homogentisate phytylt 100.0 2.2E-53 4.8E-58 412.1 28.6 275 134-408 6-280 (280)
2 PRK12887 ubiA tocopherol phyty 100.0 2.8E-51 6.1E-56 408.7 34.3 304 101-408 2-306 (308)
3 PRK12895 ubiA prenyltransferas 100.0 4.8E-36 1E-40 295.7 28.9 263 111-395 2-268 (286)
4 PRK13106 ubiA prenyltransferas 100.0 6.8E-36 1.5E-40 296.7 29.7 274 98-395 2-283 (300)
5 TIGR01475 ubiA_other putative 100.0 3.3E-35 7.2E-40 290.2 29.5 257 111-388 1-259 (282)
6 PRK12874 ubiA prenyltransferas 100.0 3.4E-34 7.3E-39 284.0 32.2 265 106-391 2-271 (291)
7 PRK12870 ubiA 4-hydroxybenzoat 100.0 7E-35 1.5E-39 288.8 27.1 264 108-395 5-276 (290)
8 PRK12886 ubiA prenyltransferas 100.0 7.5E-34 1.6E-38 281.6 32.4 265 108-395 4-272 (291)
9 PRK09573 (S)-2,3-di-O-geranylg 100.0 5.4E-34 1.2E-38 281.1 29.7 254 111-388 2-256 (279)
10 PLN02809 4-hydroxybenzoate non 100.0 8.9E-34 1.9E-38 280.5 31.0 262 109-391 3-269 (289)
11 PRK12888 ubiA prenyltransferas 100.0 6.2E-34 1.3E-38 281.2 29.6 263 111-394 1-268 (284)
12 PRK12884 ubiA prenyltransferas 100.0 7.5E-34 1.6E-38 279.9 30.1 256 110-389 2-258 (279)
13 TIGR01476 chlor_syn_BchG bacte 100.0 6.1E-34 1.3E-38 281.3 29.4 221 113-346 1-223 (283)
14 PRK12882 ubiA prenyltransferas 100.0 5.7E-34 1.2E-38 280.5 27.9 257 111-389 3-260 (276)
15 PRK07566 bacteriochlorophyll/c 100.0 2E-33 4.4E-38 281.4 32.0 225 108-344 23-249 (314)
16 PRK12848 ubiA 4-hydroxybenzoat 100.0 1.5E-33 3.1E-38 278.5 29.5 259 109-391 2-265 (282)
17 PLN00012 chlorophyll synthetas 100.0 9.3E-33 2E-37 281.3 36.3 217 109-340 82-308 (375)
18 PRK12847 ubiA 4-hydroxybenzoat 100.0 2.2E-33 4.8E-38 277.6 30.6 260 108-390 3-267 (285)
19 PRK12873 ubiA prenyltransferas 100.0 2.7E-33 5.9E-38 276.6 28.3 267 110-398 5-283 (294)
20 PRK12878 ubiA 4-hydroxybenzoat 100.0 1.5E-32 3.2E-37 274.9 32.2 266 104-391 22-295 (314)
21 COG0382 UbiA 4-hydroxybenzoate 100.0 1.4E-32 3.1E-37 272.4 31.4 272 108-402 6-282 (289)
22 PRK12876 ubiA prenyltransferas 100.0 2.5E-32 5.4E-37 269.8 30.4 264 110-392 2-280 (300)
23 PRK05951 ubiA prenyltransferas 100.0 6.6E-32 1.4E-36 268.4 33.0 265 110-389 2-275 (296)
24 PRK12392 bacteriochlorophyll c 100.0 2.7E-32 5.8E-37 274.3 30.4 254 108-376 8-269 (331)
25 TIGR01474 ubiA_proteo 4-hydrox 100.0 5.2E-32 1.1E-36 267.3 30.5 257 113-391 2-263 (281)
26 TIGR02056 ChlG chlorophyll syn 100.0 9.3E-32 2E-36 268.5 31.5 224 108-346 12-245 (306)
27 PRK04375 protoheme IX farnesyl 100.0 3.1E-31 6.8E-36 263.6 31.5 267 108-396 6-278 (296)
28 PRK12869 ubiA protoheme IX far 100.0 5E-31 1.1E-35 260.1 31.3 263 111-395 1-268 (279)
29 PRK12883 ubiA prenyltransferas 100.0 4.1E-31 9E-36 260.4 29.7 205 111-336 2-206 (277)
30 PRK06080 1,4-dihydroxy-2-napht 100.0 2.6E-30 5.5E-35 256.6 31.6 232 112-358 3-242 (293)
31 PRK13595 ubiA prenyltransferas 100.0 4.7E-30 1E-34 252.1 28.6 264 108-400 8-275 (292)
32 PRK13387 1,4-dihydroxy-2-napht 100.0 1.4E-29 2.9E-34 253.8 32.1 239 112-358 3-263 (317)
33 TIGR01473 cyoE_ctaB protoheme 100.0 8.3E-30 1.8E-34 251.5 30.1 253 113-386 1-259 (280)
34 PRK13362 protoheme IX farnesyl 100.0 2.2E-29 4.7E-34 251.1 31.5 274 108-404 9-288 (306)
35 PRK12871 ubiA prenyltransferas 100.0 2.5E-28 5.3E-33 242.6 30.9 271 110-404 3-293 (297)
36 PRK07419 1,4-dihydroxy-2-napht 100.0 1.1E-27 2.4E-32 238.4 31.4 235 109-359 9-249 (304)
37 PLN02922 prenyltransferase 100.0 2.4E-27 5.3E-32 237.1 33.2 237 110-356 13-260 (315)
38 TIGR00751 menA 1,4-dihydroxy-2 100.0 9.4E-28 2E-32 237.1 29.1 224 120-358 1-238 (284)
39 KOG1381 Para-hydroxybenzoate-p 100.0 1.5E-29 3.3E-34 240.0 11.2 277 105-402 57-339 (353)
40 COG1575 MenA 1,4-dihydroxy-2-n 100.0 2.4E-26 5.2E-31 224.9 30.6 236 110-359 6-251 (303)
41 TIGR02235 menA_cyano-plnt 1,4- 100.0 3.1E-26 6.7E-31 226.4 31.6 229 115-359 2-236 (285)
42 PRK13105 ubiA prenyltransferas 100.0 1.7E-26 3.6E-31 227.4 27.2 217 112-346 1-222 (282)
43 COG0109 CyoE Polyprenyltransfe 100.0 7.5E-27 1.6E-31 228.0 22.9 269 108-404 14-291 (304)
44 PRK12872 ubiA prenyltransferas 99.9 1.1E-25 2.3E-30 222.5 27.6 229 110-355 2-232 (285)
45 PF01040 UbiA: UbiA prenyltran 99.9 5E-26 1.1E-30 219.6 23.8 188 127-331 4-193 (257)
46 PLN02776 prenyltransferase 99.9 5.1E-25 1.1E-29 221.0 29.9 194 118-331 1-200 (341)
47 PRK12875 ubiA prenyltransferas 99.9 1.8E-24 4E-29 213.3 25.6 218 108-347 4-228 (282)
48 PRK13591 ubiA prenyltransferas 99.9 2.2E-23 4.8E-28 205.9 26.7 178 157-350 64-245 (307)
49 PRK13592 ubiA prenyltransferas 99.9 5.2E-23 1.1E-27 201.7 25.4 177 152-342 47-231 (299)
50 PRK08238 hypothetical protein; 99.9 1.8E-20 4E-25 197.2 23.9 191 106-317 185-377 (479)
51 PRK12324 phosphoribose diphosp 99.9 1.9E-19 4E-24 178.6 28.1 150 108-267 7-158 (295)
52 KOG1380 Heme A farnesyltransfe 99.5 5.3E-15 1.2E-19 144.3 6.2 194 110-324 92-289 (409)
53 KOG4581 Predicted membrane pro 99.5 1.9E-13 4.2E-18 127.9 8.9 230 108-350 57-295 (359)
54 COG1575 MenA 1,4-dihydroxy-2-n 91.4 1.1 2.3E-05 45.1 8.9 50 154-205 179-228 (303)
55 PRK12872 ubiA prenyltransferas 89.3 3.8 8.3E-05 40.3 11.0 35 158-192 168-203 (285)
56 PRK13591 ubiA prenyltransferas 88.9 1.5 3.2E-05 44.3 7.6 66 169-237 197-271 (307)
57 PRK13105 ubiA prenyltransferas 87.2 6.8 0.00015 39.1 11.1 58 157-217 166-224 (282)
58 TIGR01474 ubiA_proteo 4-hydrox 86.6 6.1 0.00013 39.1 10.5 37 156-192 165-202 (281)
59 PRK12875 ubiA prenyltransferas 86.4 15 0.00033 36.5 13.2 57 158-217 172-229 (282)
60 PRK07419 1,4-dihydroxy-2-napht 86.3 6.6 0.00014 39.6 10.6 42 161-205 184-226 (304)
61 PRK13387 1,4-dihydroxy-2-napht 85.2 3.7 8.1E-05 41.5 8.3 51 156-209 194-245 (317)
62 TIGR01475 ubiA_other putative 84.0 6 0.00013 39.1 9.1 36 157-192 164-200 (282)
63 PRK12847 ubiA 4-hydroxybenzoat 83.8 10 0.00022 37.6 10.6 37 156-192 170-207 (285)
64 PRK13592 ubiA prenyltransferas 83.4 9.1 0.0002 38.5 9.9 41 295-336 57-100 (299)
65 PLN02922 prenyltransferase 83.3 5.1 0.00011 40.6 8.3 47 157-206 194-241 (315)
66 PLN00012 chlorophyll synthetas 82.7 12 0.00026 38.8 10.9 33 160-192 261-294 (375)
67 TIGR02235 menA_cyano-plnt 1,4- 81.2 15 0.00032 36.7 10.5 48 158-208 168-216 (285)
68 PRK07566 bacteriochlorophyll/c 79.9 12 0.00027 37.7 9.7 31 162-192 200-231 (314)
69 PRK06080 1,4-dihydroxy-2-napht 79.7 18 0.00039 35.8 10.7 49 157-208 174-223 (293)
70 PRK12884 ubiA prenyltransferas 78.9 8.3 0.00018 37.9 7.9 34 159-192 163-197 (279)
71 PRK13106 ubiA prenyltransferas 78.1 6.7 0.00015 39.4 7.1 36 156-191 182-218 (300)
72 PRK12888 ubiA prenyltransferas 78.0 30 0.00065 34.4 11.6 37 156-192 164-201 (284)
73 TIGR02056 ChlG chlorophyll syn 76.3 11 0.00024 37.8 8.1 40 161-203 193-233 (306)
74 PRK12848 ubiA 4-hydroxybenzoat 76.3 30 0.00066 34.2 11.1 38 155-192 166-204 (282)
75 PRK09573 (S)-2,3-di-O-geranylg 75.6 8.2 0.00018 38.1 6.9 34 159-192 162-196 (279)
76 PRK12870 ubiA 4-hydroxybenzoat 75.5 26 0.00055 35.0 10.4 39 156-194 171-210 (290)
77 TIGR00751 menA 1,4-dihydroxy-2 75.2 27 0.00058 34.8 10.4 45 160-207 173-218 (284)
78 PRK12887 ubiA tocopherol phyty 74.9 16 0.00035 36.8 8.8 42 157-201 188-230 (308)
79 PRK12871 ubiA prenyltransferas 74.6 25 0.00055 35.2 10.1 36 157-192 181-217 (297)
80 PRK12886 ubiA prenyltransferas 74.5 33 0.00072 34.2 10.9 36 157-192 168-204 (291)
81 PRK13595 ubiA prenyltransferas 73.0 74 0.0016 32.0 12.8 24 295-318 58-81 (292)
82 TIGR01476 chlor_syn_BchG bacte 72.8 14 0.00031 36.4 7.8 38 162-202 172-210 (283)
83 PF01040 UbiA: UbiA prenyltran 71.9 21 0.00045 34.0 8.5 32 295-326 34-66 (257)
84 PRK12392 bacteriochlorophyll c 71.7 15 0.00032 37.5 7.7 34 158-191 187-221 (331)
85 PRK12883 ubiA prenyltransferas 71.6 14 0.0003 36.4 7.3 32 161-192 164-196 (277)
86 PRK12882 ubiA prenyltransferas 71.1 15 0.00033 36.1 7.5 34 159-192 165-199 (276)
87 PRK12874 ubiA prenyltransferas 70.7 39 0.00084 33.7 10.4 36 157-192 173-209 (291)
88 PRK12324 phosphoribose diphosp 69.5 25 0.00054 35.3 8.7 30 297-326 59-89 (295)
89 PRK11383 hypothetical protein; 69.4 60 0.0013 29.1 9.9 80 227-313 50-132 (145)
90 PRK12895 ubiA prenyltransferas 66.2 66 0.0014 32.1 10.9 36 156-191 164-200 (286)
91 COG0382 UbiA 4-hydroxybenzoate 64.9 1.3E+02 0.0029 29.6 12.8 72 108-184 9-85 (289)
92 PRK04375 protoheme IX farnesyl 64.1 81 0.0018 31.4 11.2 30 297-326 57-87 (296)
93 PRK12878 ubiA 4-hydroxybenzoat 62.3 99 0.0022 31.2 11.5 36 157-192 198-234 (314)
94 PRK05951 ubiA prenyltransferas 62.1 80 0.0017 31.5 10.7 36 161-199 181-217 (296)
95 PLN02809 4-hydroxybenzoate non 61.3 42 0.00091 33.5 8.5 30 297-326 58-88 (289)
96 PRK12873 ubiA prenyltransferas 60.6 72 0.0016 32.0 10.0 35 158-192 177-212 (294)
97 PRK12869 ubiA protoheme IX far 60.4 1.3E+02 0.0027 29.8 11.7 30 297-326 49-79 (279)
98 PRK13362 protoheme IX farnesyl 57.7 60 0.0013 32.7 9.0 30 297-326 60-90 (306)
99 PRK04214 rbn ribonuclease BN/u 56.6 94 0.002 32.5 10.5 21 158-178 112-132 (412)
100 TIGR01473 cyoE_ctaB protoheme 53.3 74 0.0016 31.3 8.7 30 297-326 48-78 (280)
101 PLN02878 homogentisate phytylt 52.2 74 0.0016 31.8 8.3 45 161-208 166-211 (280)
102 PRK12876 ubiA prenyltransferas 51.6 1.6E+02 0.0036 29.6 10.9 34 159-192 180-214 (300)
103 COG1295 Rbn Ribonuclease BN fa 49.7 2.3E+02 0.0049 28.4 11.7 24 155-178 110-133 (303)
104 PRK08238 hypothetical protein; 47.2 92 0.002 33.5 8.8 30 297-326 239-269 (479)
105 PLN02776 prenyltransferase 43.4 3.9E+02 0.0084 27.5 12.7 30 297-326 42-72 (341)
106 COG4147 DhlC Predicted symport 31.6 58 0.0013 35.0 4.1 55 153-214 355-409 (529)
107 TIGR02748 GerC3_HepT heptapren 31.0 5.6E+02 0.012 25.7 12.6 52 157-211 69-120 (319)
108 PF04341 DUF485: Protein of un 30.2 2.4E+02 0.0053 22.9 6.9 37 145-181 52-88 (91)
109 PF04284 DUF441: Protein of un 26.2 3.8E+02 0.0083 24.0 7.7 15 186-200 59-73 (140)
110 PRK10299 PhoPQ regulatory prot 22.2 1.1E+02 0.0025 22.0 2.9 21 160-180 14-34 (47)
111 COG0818 DgkA Diacylglycerol ki 21.1 5.7E+02 0.012 22.4 8.1 78 101-189 8-91 (123)
No 1
>PLN02878 homogentisate phytyltransferase
Probab=100.00 E-value=2.2e-53 Score=412.14 Aligned_cols=275 Identities=48% Similarity=0.836 Sum_probs=251.3
Q ss_pred HHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCCcccccccCHHHHHHHHHHHHHHHHHHH
Q 013845 134 IAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIA 213 (435)
Q Consensus 134 G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~nkp~RPl~sG~Is~~~A~~~~i~l~~lgl~l~ 213 (435)
.+++|.+..+++++.++.+++.+++++++++.+..++|||+|+|+||+|||+||+|||++|+++|+.+.+.+.++|+.++
T Consensus 6 ~~l~a~~~~~~~~~~~~~~~l~~~~~~l~~niyivglNd~~D~EIDkINkP~rPIpSG~iS~~~a~~~~~~~~~lg~~la 85 (280)
T PLN02878 6 VSLLAVESLSDFSPLFFTGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPLASGEFSVATGVAIVTSFAIMSFGMG 85 (280)
T ss_pred HhHHHhhccccccHHHHHHHHHHHHHHHhhhhheechhhhhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 35566666666766677788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhCCCccchHHHHHHHHHH
Q 013845 214 LSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAII 293 (435)
Q Consensus 214 ~~lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g~~~~~G~~~~~~~~~~g~~~~~~~~~~~~~~~~ 293 (435)
+.+|++++.+++..+++++++||.++||+|+||.++++..++..+++...++|+|.+++++++|++..+++++++..+++
T Consensus 86 ~~~g~~~l~~al~~~~~lg~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~~~~~~~~~~~~f~ 165 (280)
T PLN02878 86 WIVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATAFM 165 (280)
T ss_pred HHHChHHHHHHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCccccchhHHHHHHHH
Confidence 99998888887777878999999888999999999999988888888888899999999988887666666777777788
Q ss_pred HHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 013845 294 STISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWL 373 (435)
Q Consensus 294 ~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~ay~~~ll~g~~~~~~~~~l~~~~g~~vl~~~l~~ 373 (435)
.++..+++++||++|+|||++.|+||+|+++|++++.+++..++.++|+..++.++..+..+...++..+|.+++..+|+
T Consensus 166 ~~f~~~i~i~KDi~DieGD~~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~~~i~~g~~~~~~~~~~~~~~~h~~l~~~L~~ 245 (280)
T PLN02878 166 CFFSVVIALFKDIPDVEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGILASILWQ 245 (280)
T ss_pred HHHHHHHHHHhhCcCchhHHHCCCceechhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999998888888877777888999999999999999
Q ss_pred HHhhccCCChhhhHHHHHHHHHHHHHHHHHHHHHh
Q 013845 374 RAQTVDLSNNASTYSFYMFIWKASVIDLFNLMFEF 408 (435)
Q Consensus 374 ~~~~~d~~~~~~~~~f~~~iw~l~~~~yl~lpf~~ 408 (435)
|.+++|.+++++.++|||||||+||+||+++||.+
T Consensus 246 rs~~vD~~sk~~i~~fY~fiwklfy~ey~l~p~~~ 280 (280)
T PLN02878 246 RAQSVDLSSKAAITSFYMFIWKLFYAEYFLIPLVR 280 (280)
T ss_pred HhHhcCcccHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999863
No 2
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=100.00 E-value=2.8e-51 Score=408.71 Aligned_cols=304 Identities=31% Similarity=0.531 Sum_probs=253.9
Q ss_pred chhhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCC-CChHHHHHHHHHHHHHHHHHHHHhhhhhccccccc
Q 013845 101 STSFWDVLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFAD-LTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEID 179 (435)
Q Consensus 101 ~~~~~~~~~~~l~ay~~l~Rp~~~~~~~l~~~~G~~lA~~~~~~-~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D 179 (435)
|++.+++..+.+++|+|++|||+.+++.++++.++++|.....+ .....+...+.++++..+++.+.+++|||+|+|+|
T Consensus 2 ~~~~~~~~~~~l~~~~~l~Rp~t~igt~l~~~~~~l~a~~~~~~~~~~~~~~~~l~~~~~~~~~nv~i~~iNd~~D~~iD 81 (308)
T PRK12887 2 PKNPLQPMTSWLYALWKFSRPHTIIGTSLSVLGLYLIAIAASSNTIALANLGLLLGAWIACLCGNVYIVGLNQLTDIEID 81 (308)
T ss_pred CcchhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 56778888999999999999999999999998888776432221 11112223344445555555555559999999999
Q ss_pred ccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHH
Q 013845 180 KVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVF 259 (435)
Q Consensus 180 ~~nkp~RPl~sG~Is~~~A~~~~i~l~~lgl~l~~~lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~ 259 (435)
++|||+||++||++|+++++.+.+++.++|+.+++..|++.+.++ +++.+++++|| .||+|+||+|+.++++++..+
T Consensus 82 ~inkp~rPiasG~ls~~~a~~~~~~~~~lal~la~~~~~~~~~~~-~~~~~lg~~Ys--~pP~rlKr~~~~~~~~i~~~~ 158 (308)
T PRK12887 82 RINKPHLPLAAGEFSRRQGQRIVIITGILALILAALLGPWLLITV-GISLLIGTAYS--LPPIRLKRFPLLAALCIFTVR 158 (308)
T ss_pred hcCCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHc--CCchhhcccchhHHHHHHHHH
Confidence 999999999999999999999999999999999999998766655 46888999999 599999999999999888888
Q ss_pred HHHHHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHHH
Q 013845 260 GLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFF 339 (435)
Q Consensus 260 g~~~~~G~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~ 339 (435)
|..+.+|.+.+.+... +.....+...++..+++.+|+.+++++||++|+|||++.|+||+|+++|++++.+++..++.+
T Consensus 159 g~i~~~g~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~~a~~l~~~ll~~ 237 (308)
T PRK12887 159 GVIVNLGLFLHFQWLL-GGSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLTA 237 (308)
T ss_pred HHHHHHHHHHHHHHHH-hccccCcHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcchhHHHhHHHHHHHHHHHHHH
Confidence 8888888776543322 323334556667777888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhccCCChhhhHHHHHHHHHHHHHHHHHHHHHh
Q 013845 340 AYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKASVIDLFNLMFEF 408 (435)
Q Consensus 340 ay~~~ll~g~~~~~~~~~l~~~~g~~vl~~~l~~~~~~~d~~~~~~~~~f~~~iw~l~~~~yl~lpf~~ 408 (435)
+|+..++.+......+....+.++|++++..+++|.+++|.+|++++++|||||||+||+||+++||..
T Consensus 238 ~y~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~iw~l~~~ey~~~~~~~ 306 (308)
T PRK12887 238 CYLGMIAVGLLSLPTVNPAFLIVSHLILLALLWWRSQRVDLQDKQAIAQFYQFIWKLFFLEYLLFPIAC 306 (308)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999888777766666666666799999999999999999999999999999999999999999999864
No 3
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=4.8e-36 Score=295.67 Aligned_cols=263 Identities=16% Similarity=0.143 Sum_probs=206.5
Q ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC--CCCcc
Q 013845 111 KLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PDLPL 188 (435)
Q Consensus 111 ~l~ay~~l~Rp~~~~~~~l~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~nk--p~RPl 188 (435)
++++|+|++||++...+...+++|.++|.+..+ ++. .+++.+++.+++++++|++||+.|+|+|++|+ ++||+
T Consensus 2 ~~~~~~el~k~~~t~~al~~a~~g~~lA~~~~~--~~~---~l~l~~~~~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RPL 76 (286)
T PRK12895 2 NFRDIVDYIKLEHTVFDLPFILAGYVIAAGHYI--HPI---KILLILIAAVSARTSAMSINRIEGLRYDMINPRKKDWAL 76 (286)
T ss_pred cHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCC--CHH---HHHHHHHHHHHHHHHHHHHHhHHHhcccCCCCcCCCCCC
Confidence 478999999999999999999999999854322 222 24456678899999999999999999999995 59999
Q ss_pred cccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHHHHHHHHHHH
Q 013845 189 ASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFF 268 (435)
Q Consensus 189 ~sG~Is~~~A~~~~i~l~~lgl~l~~~lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g~~~~~G~~ 268 (435)
|+|++|+++|+.+.+++.++++.++..+|+.++.++. ..+.+...|+. +||++.++|+.+|...|.++..|+.
T Consensus 77 psG~is~~~A~~~~~~~~~~~~~~~~~ln~l~~~l~~-~~~~l~~~yp~------~KR~t~~~~~~lG~~~g~~~l~g~~ 149 (286)
T PRK12895 77 VSGRIKMREAIAFTIIFIAIFEICTFLLNRLVFILSP-IVIFLFIIDPF------LKRYTAWRHIYMGSIIGLGVLAGYL 149 (286)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHH------HHhCccccHHHHHHHHHhHHHHHHH
Confidence 9999999999999999999999999889998877664 35556667774 8999999999899888876667764
Q ss_pred HHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHH
Q 013845 269 IHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVG 348 (435)
Q Consensus 269 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~ay~~~ll~g 348 (435)
+. ++...+....+++.+...+|+.++|++|++||+|+|++.|+||+|+++|++++.++...+..++..+..+.+
T Consensus 150 Av------~g~~~~~~~~~~l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~~~~~~i~~~~~~~~~~~~~~~g 223 (286)
T PRK12895 150 AV------IPAFPYNLLIYIIFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGIKNGLYISDIFHISSLILFWISG 223 (286)
T ss_pred HH------cCCCCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCCccHHHHHHHHHHHHHHHHHHHH
Confidence 42 222222223344566677899999999999999999999999999999999888776556555555555555
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHhhccCCChhhh-HHHH-HHHHH
Q 013845 349 ASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNAST-YSFY-MFIWK 395 (435)
Q Consensus 349 ~~~~~~~~~l~~~~g~~vl~~~l~~~~~~~d~~~~~~~-~~f~-~~iw~ 395 (435)
.... +.++.++..+.+..+.+|++.+|.+|+++| .+|| ++.|-
T Consensus 224 ~~~~----~~~y~~~~~~~~~~l~~q~~~~~~~~~~~~~~~~F~~N~~i 268 (286)
T PRK12895 224 IYIR----TLWYLAALIIIYTLVIYQHLIIDPRNPINKRMSFFNANSFI 268 (286)
T ss_pred HHHh----hHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHcCHH
Confidence 4332 345667777778889999999999999988 5544 44443
No 4
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=6.8e-36 Score=296.74 Aligned_cols=274 Identities=16% Similarity=0.173 Sum_probs=208.0
Q ss_pred ccCchhhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccc
Q 013845 98 DINSTSFWDVLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVE 177 (435)
Q Consensus 98 ~~~~~~~~~~~~~~l~ay~~l~Rp~~~~~~~l~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e 177 (435)
++||+ .++..+.++++|+|++||++.++...+.++|.++|..+.+ ++. .+++.+++.+++++++|++||++|+|
T Consensus 2 ~~~~~-~~~~~~~~l~~yl~L~R~~~~~~~l~~~~~g~~la~~~~~--~~~---~l~l~~lg~~l~~~a~~~~Nd~~D~d 75 (300)
T PRK13106 2 SWDPG-GLNNTRSKFYIILRFLRIEQTFFSLPMAYLGAFVAIKGIP--PIS---TLILIFLALFFLRTAGMTNDNLADLE 75 (300)
T ss_pred CCCcc-cchhhHHHHHHHHHHHccccHHHHHHHHHHHHHHHcCCCC--CHH---HHHHHHHHHHHHHHHHHHHHhhHHhc
Confidence 35663 3344778999999999999999999989999999865432 332 24567889999999999999999999
Q ss_pred ccccCC--CCCcccccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHH
Q 013845 178 IDKVNK--PDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCM 255 (435)
Q Consensus 178 ~D~~nk--p~RPl~sG~Is~~~A~~~~i~l~~lgl~l~~~lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i 255 (435)
+|++|+ ++||+|+|++|+++|+.+.++..+.++.++..+|+.+..++. ..+++...||. +||++.++|+.+
T Consensus 76 iD~~~~RT~~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~ln~~~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~~l 148 (300)
T PRK13106 76 IDAKNPRTKNRPLVTGAIKISEAKALITAGLILFFASAYLVNRWALLLSP-IVALIAMSYPY------MKRYTAFANYHL 148 (300)
T ss_pred cccCCCccCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhH------HhcCCcchHHHH
Confidence 999995 699999999999999999877777777777888987777664 35556788985 799999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCc-----cchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHH
Q 013845 256 VTVFGLVYQFSFFIHFQKYVLGRPV-----VITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVL 330 (435)
Q Consensus 256 ~~~~g~~~~~G~~~~~~~~~~g~~~-----~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~ 330 (435)
+...+..+..|+.++ .|... ..+...++..+...+|+.++|++|++||+|+|++.|+||+|+++| +++.
T Consensus 149 g~~~~~~~~~G~~a~-----~g~~~~~~~~~l~~~~~~l~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G-~~a~ 222 (300)
T PRK13106 149 ASIQGLAVFSGAVAV-----LGLYANSLIQVLLRVPWLFVIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG-KWAL 222 (300)
T ss_pred HHHHHHHHHHHHHHH-----cCCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh-hhHH
Confidence 988887766776442 12110 011222334455678899999999999999999999999999999 8888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhccCCChhhh-HHHHHHHHH
Q 013845 331 RLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNAST-YSFYMFIWK 395 (435)
Q Consensus 331 ~l~~~l~~~ay~~~ll~g~~~~~~~~~l~~~~g~~vl~~~l~~~~~~~d~~~~~~~-~~f~~~iw~ 395 (435)
++...+...+..+..+.+...... ..+.++..+...++.++...++.+ ++| +.|..+.|-
T Consensus 223 ~~~~~~~~~~v~l~~~~~~~~~lg---~~y~~~~~~~~~~l~~~~~~~~~~--~~~~~~F~~n~~i 283 (300)
T PRK13106 223 TFAGLNQLFSVVLDLLGDLYYGLG---PIAIAATILHGLIMAYAYYLASKK--GDFGRAFYYNIYS 283 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHHHHHHHHhCCc--hHHHHHHHHccHH
Confidence 877777666666665555554443 345556666677888888888776 444 455455554
No 5
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=100.00 E-value=3.3e-35 Score=290.21 Aligned_cols=257 Identities=17% Similarity=0.201 Sum_probs=200.3
Q ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccC--CCCCcc
Q 013845 111 KLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVN--KPDLPL 188 (435)
Q Consensus 111 ~l~ay~~l~Rp~~~~~~~l~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~n--kp~RPl 188 (435)
++++|+|++||++..+..+.+..|.++|.++.+ ++. .+++++++.+++++++|++||++|+|+|++| +|+||+
T Consensus 1 ~~~~~~~L~r~~~~~~~~~~~~~g~~la~~~~~--~~~---~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl 75 (282)
T TIGR01475 1 KFKDILELIKFEHTVFALPFAYAGALLAAKGLP--GLK---TLILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPL 75 (282)
T ss_pred CHHHHHHHHccccHHHHHHHHHHHHHHhcCCCC--CHH---HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCC
Confidence 368999999999999998888889998855432 332 2567888999999999999999999999998 579999
Q ss_pred cccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHHHHHHHHHHH
Q 013845 189 ASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFF 268 (435)
Q Consensus 189 ~sG~Is~~~A~~~~i~l~~lgl~l~~~lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g~~~~~G~~ 268 (435)
++|++|+++|+.+.+++.++++.++..+|..+..++. .+.++.++|+. +||++.+++++.+...+.++..|+.
T Consensus 76 ~sG~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~l~~-~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~~~~g~~ 148 (282)
T TIGR01475 76 VSGLISKKEARTMIILSLALFLSASYFLNPLAFILSP-LVLLVLIIYPY------TKRFTFLCHYVLGSTYGLAPLAGWV 148 (282)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhh------HhccccccHHHHHHHHHHHHHHHHH
Confidence 9999999999999998888888888888887776654 45666889985 7999999999887777766666654
Q ss_pred HHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHH
Q 013845 269 IHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVG 348 (435)
Q Consensus 269 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~ay~~~ll~g 348 (435)
+. .|. .......++..+...+|+.+++++||++|+|+|+++|+||+|+++|+|++.++...+..+++++..+.+
T Consensus 149 a~-----~g~-~~~~~~~~ll~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~ 222 (282)
T TIGR01475 149 AV-----IGT-ISFFLVAWLLGIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGIKAALKIASLSHVITFILLLLVG 222 (282)
T ss_pred HH-----hCC-ccchHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhchHHHHHHHHHHHHHHHHHHHHHH
Confidence 42 122 221123344456667888899999999999999999999999999999998887777767776666555
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHhhccCCChhhhHH
Q 013845 349 ASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYS 388 (435)
Q Consensus 349 ~~~~~~~~~l~~~~g~~vl~~~l~~~~~~~d~~~~~~~~~ 388 (435)
...... ..+.++..+.+..++++.+..|.+|++++++
T Consensus 223 ~~~~~g---~~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 259 (282)
T TIGR01475 223 FYVGNG---YIALLALILIGLILAYEHYIVDPGDQSKIQR 259 (282)
T ss_pred HHhhCc---HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 544433 3444555555667778888888888877765
No 6
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=3.4e-34 Score=283.97 Aligned_cols=265 Identities=20% Similarity=0.202 Sum_probs=199.6
Q ss_pred HHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhccc---CCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccC
Q 013845 106 DVLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQS---FADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVN 182 (435)
Q Consensus 106 ~~~~~~l~ay~~l~Rp~~~~~~~l~~~~G~~lA~~~---~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~n 182 (435)
++.++++++|+|++||++.+.+...++.|.++|... ...+++. .+++++++.+++++++|++|||+|+|+|++|
T Consensus 2 ~~~~~~l~~y~~l~r~~~~~~~l~~a~~g~~la~~~~~~~~~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~DrdiD~~~ 78 (291)
T PRK12874 2 KKFTKKLKDISELVVFKHSIFSLPFIFIAMIVASKQKNDTGWFGFK---LLILGILAAVSARNFAMAFNRLVDRDIDKDN 78 (291)
T ss_pred chHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhhhccCCCCCHH---HHHHHHHHHHHHHHHHHHHHhhhhhccccCC
Confidence 356788999999999999999999999998887521 1123332 2567788999999999999999999999999
Q ss_pred C--CCCcccccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHHH
Q 013845 183 K--PDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFG 260 (435)
Q Consensus 183 k--p~RPl~sG~Is~~~A~~~~i~l~~lgl~l~~~lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g 260 (435)
+ |+||+++|++|+++|+.+++++.++++.+++.+|+.+..+++ ..+++..+||. +||++.+++++.+...+
T Consensus 79 ~RT~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~~~n~~~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~~~g~~~~ 151 (291)
T PRK12874 79 PRTANRPSVDGRISVKSMVLFIVLNALIFIGVSYFINPLAFKLSF-PFLIVLGGYSY------FKRFSSLAHLVLGLSLG 151 (291)
T ss_pred CCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhh------hcccccccHHHHHHHHH
Confidence 7 599999999999999999999988888888888988777664 46667899995 89999999998887777
Q ss_pred HHHHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHHHH
Q 013845 261 LVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFA 340 (435)
Q Consensus 261 ~~~~~G~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~a 340 (435)
.++.+|+.++ .|. . +.+.+++.+...+|+.+++++|+++|+|+|+++|+||+|+++|++++.++......+.
T Consensus 152 ~~~l~G~~av-----~g~-~--~~~~~~l~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~~~~~~~~~~~~~~~ 223 (291)
T PRK12874 152 LAPIAGVVAV-----LGE-I--PLWSVFLALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEKATLFISRLFHLLA 223 (291)
T ss_pred HHHHHHHHHH-----cCC-C--cHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhhHhHHHHHHHHHHHH
Confidence 7777776542 132 2 2233444566678999999999999999999999999999999999887655554444
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhccCCChhhhHHHHH
Q 013845 341 YGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYM 391 (435)
Q Consensus 341 y~~~ll~g~~~~~~~~~l~~~~g~~vl~~~l~~~~~~~d~~~~~~~~~f~~ 391 (435)
.+.....+...... ..+.++..+.+..+.++.+.++.+|++.++.||.
T Consensus 224 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ff~ 271 (291)
T PRK12874 224 VLFWLLFVWCAHLG---LFAYLGVIVSALILLYEHYLVRKDFKKIDKAFFT 271 (291)
T ss_pred HHHHHHHHHHhcch---HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 33333333322222 2333444455566677777776666666766643
No 7
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=100.00 E-value=7e-35 Score=288.84 Aligned_cols=264 Identities=16% Similarity=0.149 Sum_probs=198.9
Q ss_pred HHHHHHHHHhhhccchHHHHH---HHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC-
Q 013845 108 LLKKLHALYVFTRPFAMIGTI---VGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK- 183 (435)
Q Consensus 108 ~~~~l~ay~~l~Rp~~~~~~~---l~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~nk- 183 (435)
+++++++|+|++||+++.++. +++++|.++|....+ ++. .+++++++.+++++++|++||++|+|+|++|+
T Consensus 5 ~~~~~~~y~~L~R~~kp~~~~l~~~~~~~g~~lA~~~~~--~~~---~~~l~~lg~~~~~~a~~~~Nd~~D~~iD~~~~R 79 (290)
T PRK12870 5 LEPTWLAIIRLLRWDKPAGRLILMIPALWAVFLAAHGLP--PLP---LVGIIILGALATSAAGCVVNDLWDRDIDPQVER 79 (290)
T ss_pred cchhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHccCCC--CHH---HHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCc
Confidence 457889999999999987776 477888888854332 222 24567889999999999999999999998754
Q ss_pred C-CCcccccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHHHHH
Q 013845 184 P-DLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLV 262 (435)
Q Consensus 184 p-~RPl~sG~Is~~~A~~~~i~l~~lgl~l~~~lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g~~ 262 (435)
+ +||+|+|++|+++|+.+++++.++++.+++.+|+.++.+++ .++++.++||. .||++.+++++.+...+..
T Consensus 80 t~~RPL~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~~lg~~~~~~ 152 (290)
T PRK12870 80 TRFRPLASRRLSVKVGIVIAIVALLCAAGLAFFLNPLSFWLCV-AAVPVIFLYPL------AKRVFPVPQLVLAIAWGFA 152 (290)
T ss_pred ccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHhhh------hhhccccceeeehHHHHhH
Confidence 3 89999999999999999999999999999889988777765 46667899985 7999999998877777766
Q ss_pred HHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHHHHHH
Q 013845 263 YQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYG 342 (435)
Q Consensus 263 ~~~G~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~ay~ 342 (435)
+..|+.+. .|. . +...+++.+...+|+.+++++++++|+|+|+++|+||+|+++|++++.++... ..+...
T Consensus 153 ~l~g~~a~-----~g~-~--~~~~~~l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~~~~~~~-~~~~~~ 223 (290)
T PRK12870 153 VLISWSAV-----TGH-L--DLGTWLLWAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAPEAIGLF-FALTVG 223 (290)
T ss_pred HHHHHHHH-----cCC-C--CHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccccHHHHHHH-HHHHHH
Confidence 55665432 132 2 23344556677789999999999999999999999999999999988776553 333333
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhc--cCCChhhhHHHHH-HHHH
Q 013845 343 VSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTV--DLSNNASTYSFYM-FIWK 395 (435)
Q Consensus 343 ~~ll~g~~~~~~~~~l~~~~g~~vl~~~l~~~~~~~--d~~~~~~~~~f~~-~iw~ 395 (435)
.....+......+ .+.++..+....+.++..++ |.+|++.|.++|+ +.|-
T Consensus 224 ~l~~~~~~~~~~~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~F~~n~~~ 276 (290)
T PRK12870 224 FLAILGVLLELHL---PFWIGLAIAAVLWARQYRRLRQANLPPLAYGQLFLQNVWI 276 (290)
T ss_pred HHHHHHHHhCCcH---HHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHhhHH
Confidence 3334444443332 33445556667788888877 7677777766654 4443
No 8
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=7.5e-34 Score=281.58 Aligned_cols=265 Identities=19% Similarity=0.159 Sum_probs=197.5
Q ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC--CC
Q 013845 108 LLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PD 185 (435)
Q Consensus 108 ~~~~l~ay~~l~Rp~~~~~~~l~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~nk--p~ 185 (435)
+.+++++|+|++||++......+.+.|.++|..+.++ +. .+++++++.+++++++|++|||+|+|+|++|+ ++
T Consensus 4 ~~~~~~~y~~L~r~~~~~~~~~~~~~g~~lA~~~~~~--~~---~l~~~~l~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~ 78 (291)
T PRK12886 4 LLTKLKVFLEMIKFSHTLFALPFAGIGAVLAALGLPG--AS---QLDWILMAMVGARTAAMGFNRLIDAEIDARNPRTAG 78 (291)
T ss_pred hHHHHHHHHHHhCccchHHHHHHHHHHHHHhccCCCC--HH---HHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCCCCC
Confidence 4567899999999999999988899999998543332 21 24567889999999999999999999999998 58
Q ss_pred CcccccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHHHHHHHH
Q 013845 186 LPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQF 265 (435)
Q Consensus 186 RPl~sG~Is~~~A~~~~i~l~~lgl~l~~~lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g~~~~~ 265 (435)
||+++|++|+++|+.+.+.+.+.++.++...|+++..+++ +++++.+.||. +||++.++++..+...+.++..
T Consensus 79 RPL~sG~is~~~A~~~~~~~~~~~~~l~~~~~~~~~~l~~-~~~~~~~~Y~~------~Kr~t~~~~~~~g~~~~~~~l~ 151 (291)
T PRK12886 79 RAIPAGLISKGSAILFIVLSSLLMLFAAWFLNPLCLYLSP-PALFFLLLYSY------CKRFTALAHVVLGFCLALAPLG 151 (291)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhh------hhccccccHHHHHHHHHHHHHH
Confidence 9999999999999998776666666666778988777765 35666899995 7999999998777665655555
Q ss_pred HHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHH
Q 013845 266 SFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSV 345 (435)
Q Consensus 266 G~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~ay~~~l 345 (435)
|+++. .|. . +...+++.+.+.+|+.+.+++++++|+|+|+++|+||+|+++|++++.++........+.+.+
T Consensus 152 g~~a~-----~g~-~--~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~~ 223 (291)
T PRK12886 152 AWIAI-----RGT-I--ELPAILLGLAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGVNGSLWIARVFHLLMIGFLF 223 (291)
T ss_pred HHHHH-----cCC-C--cHHHHHHHHHHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCchhHHHHHHHHHHHHHHHHH
Confidence 55432 132 2 233445556667888899999999999999999999999999999998876666555555555
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCh-hhhHHH-HHHHHH
Q 013845 346 IVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNN-ASTYSF-YMFIWK 395 (435)
Q Consensus 346 l~g~~~~~~~~~l~~~~g~~vl~~~l~~~~~~~d~~~~-~~~~~f-~~~iw~ 395 (435)
+.+.....+ .++.++..+.+..+.++.+..+.+|+ +.++++ ..+.|-
T Consensus 224 ~~~~~~~~~---~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~F~~~~~~ 272 (291)
T PRK12886 224 ALGISAGLG---PWFLAGLAVTGILLLYEHWLLRGGDLTRLDAAFFNMNGYI 272 (291)
T ss_pred HHHHHhcCc---HHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhHHH
Confidence 555443333 34445555566666677777777773 456564 344443
No 9
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=100.00 E-value=5.4e-34 Score=281.15 Aligned_cols=254 Identities=19% Similarity=0.240 Sum_probs=191.1
Q ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCCcccc
Q 013845 111 KLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLAS 190 (435)
Q Consensus 111 ~l~ay~~l~Rp~~~~~~~l~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~nkp~RPl~s 190 (435)
++++|++++||+++..+.++.++|.++|.+.. .++. .+++++++.+++++++|++|||+|+|+|++|+|+||+++
T Consensus 2 ~~~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~--~~~~---~~~l~~l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~s 76 (279)
T PRK09573 2 SIKAYFELIRPKNCIGASIGAIIGYLIASNFK--IDLK---GIILAALVVFLVCAGGNVINDIYDIEIDKINKPERPIPS 76 (279)
T ss_pred CHHHHHHHHhHhHHHHHHHHHHHHHHHHccCC--cchH---HHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcCC
Confidence 36889999999999999999999999885422 2322 256778899999999999999999999999999999999
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHHHHHHHHHHHHH
Q 013845 191 GDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIH 270 (435)
Q Consensus 191 G~Is~~~A~~~~i~l~~lgl~l~~~lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g~~~~~G~~~~ 270 (435)
|++|+++|+.+++++.++++.+++.+|+++..+++ .+.++.++||. ++||++.++|+++++..|..+..|....
T Consensus 77 G~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~~-~~~~~~~~Ys~-----~lKr~~~~~~~~vg~~~G~~~~~g~~~~ 150 (279)
T PRK09573 77 GRISLKEAKIFSITLFIVGLILSIFINIYAFLIAL-LNSILLYLYAK-----DLKKTGLIGNLIVAYLTGLSFIFGGLAV 150 (279)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHH-----HHhcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998888988777765 46667899995 4899999999999988887766665432
Q ss_pred HHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHHh
Q 013845 271 FQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGAS 350 (435)
Q Consensus 271 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~ay~~~ll~g~~ 350 (435)
+. .. ..+++.....+|+.+++++||++|+|+|+++|+||+|+++|+|++.++......+......+....
T Consensus 151 ------~~--~~--~~~~l~~~~f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~ 220 (279)
T PRK09573 151 ------FN--VL--RIIILFLCAFFSTWSREIVKDIEDIEGDLKENVITLPIKYGIKKSWYIAKILLILAIVLSPLPYFL 220 (279)
T ss_pred ------cc--ch--HHHHHHHHHHHHHHHHHHHhhhhhhhhHHHCCCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 11 223334445567788999999999999999999999999999999887665554444333322211
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHh-hccCCChhhhHH
Q 013845 351 SSFQLVKLVSIIGHSTLAFLLWLRAQ-TVDLSNNASTYS 388 (435)
Q Consensus 351 ~~~~~~~l~~~~g~~vl~~~l~~~~~-~~d~~~~~~~~~ 388 (435)
...++.+.++..++...+.++.. ..+.+|++.+++
T Consensus 221 ---~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 256 (279)
T PRK09573 221 ---GIFGIYYLIVVIICDILFIIAMLILLKNPSIEGASK 256 (279)
T ss_pred ---HHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHH
Confidence 11234455555555556666533 334445555433
No 10
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=100.00 E-value=8.9e-34 Score=280.50 Aligned_cols=262 Identities=21% Similarity=0.133 Sum_probs=197.4
Q ss_pred HHHHHHHHhhhccchHHHHHHHH---HHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC--
Q 013845 109 LKKLHALYVFTRPFAMIGTIVGI---TSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK-- 183 (435)
Q Consensus 109 ~~~l~ay~~l~Rp~~~~~~~l~~---~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~nk-- 183 (435)
++++++|+|++|++++.++.+.. ..|..++.......++. .+++.+++.+++++++|++||++|+|+|++|+
T Consensus 3 ~~~~~~y~~L~Rl~kp~~~~l~~~p~~~~~~l~a~~~~~~~~~---~l~l~~~g~~~~~~a~~~~Nd~~Dr~iD~~~~RT 79 (289)
T PLN02809 3 PPSLRPYAKLARLDKPIGTWLLAWPCMWSIALAAPPGSLPDLK---MLALFGCGALLLRGAGCTINDLLDRDIDKKVERT 79 (289)
T ss_pred chhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccCCCCcHH---HHHHHHHHHHHHHHHHHHHHhhHHhccccCCCCC
Confidence 46899999999999988876544 45555553211111222 24567889999999999999999999999875
Q ss_pred CCCcccccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHHHHHH
Q 013845 184 PDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVY 263 (435)
Q Consensus 184 p~RPl~sG~Is~~~A~~~~i~l~~lgl~l~~~lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g~~~ 263 (435)
|+||+|+|++|+++|+.+.+++.++++.+++.+|..++.+++ +++++.++||. +||++.++++..+...+.++
T Consensus 80 ~~RPL~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~~lg~~~~~~~ 152 (289)
T PLN02809 80 KLRPIASGALTPFQGVGFLGAQLLLGLGILLQLNNYSRILGA-SSLLLVFTYPL------MKRFTFWPQAFLGLTFNWGA 152 (289)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhH------HHhcCcchHHHHHHHHHHHH
Confidence 599999999999999999999999999998888887777765 46777899995 89999999997776666666
Q ss_pred HHHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHHHHHHH
Q 013845 264 QFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGV 343 (435)
Q Consensus 264 ~~G~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~ay~~ 343 (435)
..|+.++ .|.. .. ...+.+.....+|+.+.+++++++|+|+|+++|+||+|+++|++...+++ .+....+..
T Consensus 153 l~g~~av-----~g~~-~~-~~~~~l~~~~~~W~~~~d~~ya~~D~e~D~~~Gi~sl~v~~G~~~~~~i~-~~~~~~~~~ 224 (289)
T PLN02809 153 LLGWAAV-----KGSL-DP-AVVLPLYASGVCWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDDTKLWLT-GFGAASIGG 224 (289)
T ss_pred HHHHHHH-----hCCC-Ch-HHHHHHHHHHHHHHHHHHHHHHHhchhhHHhCCCcccchhhcHHHHHHHH-HHHHHHHHH
Confidence 5665332 2322 11 22222455667789999999999999999999999999999999666555 344555555
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhccCCChhhhHHHHH
Q 013845 344 SVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYM 391 (435)
Q Consensus 344 ~ll~g~~~~~~~~~l~~~~g~~vl~~~l~~~~~~~d~~~~~~~~~f~~ 391 (435)
....+...... ..+.+++.+.+..+++|.+.+|.+|+++|.++|+
T Consensus 225 l~~~g~~~~~~---~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~F~ 269 (289)
T PLN02809 225 LALSGYNAGLG---WPYYAGLAAAAGHLAWQIQTVDLSSRADCNRKFV 269 (289)
T ss_pred HHHHHHHhcCc---HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 55555544433 2344567777788999999999999998766543
No 11
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=6.2e-34 Score=281.16 Aligned_cols=263 Identities=15% Similarity=0.115 Sum_probs=200.2
Q ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHhccc-CCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC--CCCc
Q 013845 111 KLHALYVFTRPFAMIGTIVGITSIAILPLQS-FADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PDLP 187 (435)
Q Consensus 111 ~l~ay~~l~Rp~~~~~~~l~~~~G~~lA~~~-~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~nk--p~RP 187 (435)
++++|+|++||++.+.+...++.|.+.+... ...+++. .+++.+++.+++++++|++||++|+|+|++|+ |+||
T Consensus 1 ~~~~~~~l~r~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~~RP 77 (284)
T PRK12888 1 RVRAFLRLVAIEHSVFALPFAYIAALTAMFASDGSVHWA---DLLLVTVAMVGARTFAMAANRIIDREIDARNPRTAGRE 77 (284)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHHHHHHHHHHHhHHhhCCCCCCCCCCCCC
Confidence 3689999999999988777666666665311 1123332 24577889999999999999999999999998 5999
Q ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHHHHHHHHHH
Q 013845 188 LASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSF 267 (435)
Q Consensus 188 l~sG~Is~~~A~~~~i~l~~lgl~l~~~lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g~~~~~G~ 267 (435)
+|+|++|+++|+.+.+.+.++++.++..+|+.+..++. ++++..++|+. .||++.++++..+...+.++..|+
T Consensus 78 L~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~l~~-~~~~~~~~Y~~------~Kr~t~~~~~~lg~~~~~~~l~g~ 150 (284)
T PRK12888 78 LVTGAVSVRTAWTGALVALAVFLGAAALLNPLCLALAP-LAVAPLVVYPY------AKRFTNFPHAILGLAQAVGPVGAW 150 (284)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHH------hhcccchhhHHHHHHHHHHHHHHH
Confidence 99999999999999998888888888888887776664 45566789985 799999999988777666655665
Q ss_pred HHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHH
Q 013845 268 FIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIV 347 (435)
Q Consensus 268 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~ay~~~ll~ 347 (435)
++. .|. . +...+++.+...+|+.+++++|++||+|+|+++|+||+|+++|+|++.++...+..+.+++..+.
T Consensus 151 ~a~-----~g~-~--~~~~~ll~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ll~~~ 222 (284)
T PRK12888 151 IAV-----TGT-W--SWPAVLLGLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVRAALWASRVAHVVTFALFVWF 222 (284)
T ss_pred HHH-----cCC-C--CHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCchhHHHHHHHHHHHHHHHHHHH
Confidence 432 132 2 33344556677788999999999999999999999999999999999876666655655555555
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHhhccCCChhhhH-HHH-HHHH
Q 013845 348 GASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTY-SFY-MFIW 394 (435)
Q Consensus 348 g~~~~~~~~~l~~~~g~~vl~~~l~~~~~~~d~~~~~~~~-~f~-~~iw 394 (435)
+......+ .+.++..+.+..+.+|.+.+|.+|+++|. .|| .+.|
T Consensus 223 ~~~~~~~~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ff~~n~~ 268 (284)
T PRK12888 223 GLAVGFGA---LWWIGLAITAGAFAYEHAIVSPTDLSRVNRAFFTANGF 268 (284)
T ss_pred HHHhCCcH---HHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHhhH
Confidence 55444433 34456667778889999999999988865 554 4444
No 12
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=7.5e-34 Score=279.92 Aligned_cols=256 Identities=19% Similarity=0.285 Sum_probs=194.4
Q ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCCccc
Q 013845 110 KKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLA 189 (435)
Q Consensus 110 ~~l~ay~~l~Rp~~~~~~~l~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~nkp~RPl~ 189 (435)
+++++|++++||+++..+.++.++|.++|....+ +. .+++++++.+++++++|++||++|+|+|++|+|+||++
T Consensus 2 ~~l~~~~~l~R~~~~~~~~~~~~~g~~la~~~~~---~~---~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~r~~Rpl~ 75 (279)
T PRK12884 2 TKMKAYLELLRPEHGLMAGIAVVLGAIIALGGLP---LD---EALLGFLTAFFASGSANALNDYFDYEVDRINRPDRPIP 75 (279)
T ss_pred hHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCCc---hH---HHHHHHHHHHHHHHHHHHHHhhhhHhhhhccCCCCCCC
Confidence 5789999999999999999999999999854322 21 24567789999999999999999999999999999999
Q ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHHHHHHHHHHHH
Q 013845 190 SGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFI 269 (435)
Q Consensus 190 sG~Is~~~A~~~~i~l~~lgl~l~~~lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g~~~~~G~~~ 269 (435)
+|++|+++++.+++++.+++++++..+|+....+++ ++++++++||. ++||++++++++++...|.++..|...
T Consensus 76 ~G~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~Ys~-----~lK~~~~~~~~~~~~~~~~~~~~g~~~ 149 (279)
T PRK12884 76 SGRISRREALLLAILLFILGLIAAYLISPLAFLVVI-LVSVLGILYNW-----KLKEYGLIGNLYVAFLTGMTFIFGGIA 149 (279)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHH-----hhccccchhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998888987776654 57778999995 489999889998887777665555433
Q ss_pred HHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHH
Q 013845 270 HFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGA 349 (435)
Q Consensus 270 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~ay~~~ll~g~ 349 (435)
. +... ...++......+|+.+.++.+|++|+|+|+++|+||+|+++|+|++.++...+....++...+...
T Consensus 150 ~------~~~~---~~~~~l~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~~ 220 (279)
T PRK12884 150 V------GELN---EAVILLAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGEKIAGRIAAALFILAVLLSPLPYL 220 (279)
T ss_pred h------CCCc---hHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 2211 134444555667788889999999999999999999999999999998877766666654444333
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHH-hhccCCChhhhHHH
Q 013845 350 SSSFQLVKLVSIIGHSTLAFLLWLRA-QTVDLSNNASTYSF 389 (435)
Q Consensus 350 ~~~~~~~~l~~~~g~~vl~~~l~~~~-~~~d~~~~~~~~~f 389 (435)
....++ .+.+...+....+.++. +..+.+|++.++++
T Consensus 221 ~~~~~~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 258 (279)
T PRK12884 221 FGIFNI---LYLAPVLVADLIFLYSAYSLLRSQDRETIRKV 258 (279)
T ss_pred HHHhhH---HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 322232 33444444445555554 44455555555554
No 13
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=100.00 E-value=6.1e-34 Score=281.30 Aligned_cols=221 Identities=20% Similarity=0.246 Sum_probs=174.0
Q ss_pred HHHHhhhccchHHHHHHHHHHHHHHhcccCCC-CChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCCccccc
Q 013845 113 HALYVFTRPFAMIGTIVGITSIAILPLQSFAD-LTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASG 191 (435)
Q Consensus 113 ~ay~~l~Rp~~~~~~~l~~~~G~~lA~~~~~~-~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~nkp~RPl~sG 191 (435)
++|++++||++++.+..++++|.++|...... +++. ..++.++++..++++++|++|||+|+|+|++|+|+||+++|
T Consensus 1 ~~~~~l~rp~t~~~~~~~~~~G~~~a~~~~~~~~~~~--~~ll~~~~~~~l~~~~~n~~Nd~~D~~~D~~~~~~Rpi~~G 78 (283)
T TIGR01476 1 RAHIELMKPVTWIPPIWACFCGALASGYERGFPEHWW--LMLLGMLMAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSG 78 (283)
T ss_pred CceeEecCCceehhHHHHHHHHHHhccCCCCcchhHH--HHHHHHHHHHHHHHHHHHHHHhHhhhCcccCCCCCCCCCCC
Confidence 46899999999999999999999888422122 3332 12344677999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhchHH-HHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHHHHHHHHHHHHH
Q 013845 192 DLSMGTGLAITLTLSLTSLAIALSLQSPP-LIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIH 270 (435)
Q Consensus 192 ~Is~~~A~~~~i~l~~lgl~l~~~lg~~~-l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g~~~~~G~~~~ 270 (435)
++|+++++.+.+++..+++++++.++.+. ..++ +++++.+++||. ||+|+||+++++++.+++.++..+..+.+.
T Consensus 79 ~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~~l~-~~~~~~~~~Ys~--~p~~lk~~~~~g~~~vg~~~~~~~~~~~~~- 154 (283)
T TIGR01476 79 IISLREVRWNWLVLTVAGLLVALVLGNWLIVLFT-VVGIVLAVIYSM--PPIKLKRNGWLGPPAVGLSYEGLPWMAGHA- 154 (283)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhheecC--chhhhccCCCccHHHHHHHHHHHHHHHHHH-
Confidence 99999999999999999999888877666 4443 457778999995 899999999889998876555433322221
Q ss_pred HHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHH
Q 013845 271 FQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVI 346 (435)
Q Consensus 271 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~ay~~~ll 346 (435)
+.+ . .+...++......+++.+++++||++|+|+|+++|+||+|+++|+|++.+++..++.++|+..+.
T Consensus 155 ----~~~-~--~~~~~~~~~~~~~l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~ 223 (283)
T TIGR01476 155 ----IFA-P--LTWQSVVVALIYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVFQAMVIG 223 (283)
T ss_pred ----HhC-C--CCHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcCcceEEcHHHHHHHHHHHHHHHHHHHHH
Confidence 122 2 23334444556667788899999999999999999999999999999999888877777765543
No 14
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=5.7e-34 Score=280.52 Aligned_cols=257 Identities=21% Similarity=0.251 Sum_probs=188.1
Q ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCCcccc
Q 013845 111 KLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLAS 190 (435)
Q Consensus 111 ~l~ay~~l~Rp~~~~~~~l~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~nkp~RPl~s 190 (435)
++++|++++||++...+.++.+.|.++|.+..++ .. ..++++++.+++++++|++||++|+|+|++|+|+||+++
T Consensus 3 ~~~~~~~l~Rp~~~~~~~~~~~~g~~~a~~~~~~--~~---~~~l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~~~Rpl~~ 77 (276)
T PRK12882 3 TVRGYLELTRPVNAVVAGVAAFIGAFIAGGILSS--PS---LTGLAFAAVFLATGAGNAINDYFDREIDRINRPDRPIPS 77 (276)
T ss_pred CHHHHHHHHhhhHHHHHHHHHHHHHHHhccccch--HH---HHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCcCC
Confidence 4789999999999999999999999998543221 11 145778899999999999999999999999999999999
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHHHHHHHHHHHHH
Q 013845 191 GDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIH 270 (435)
Q Consensus 191 G~Is~~~A~~~~i~l~~lgl~l~~~lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g~~~~~G~~~~ 270 (435)
|++|+++++.+++++.++|+++++.+|+....+++ .++++.++||. |+||++.++|++++...|..+.+|...
T Consensus 78 G~is~~~a~~~~~~l~~~g~~~~~~l~~~~~~~~~-~~~~~~~~Yt~-----~lK~~~~~g~~~vg~~~g~~~~~g~~~- 150 (276)
T PRK12882 78 GAVSPRGALAFSILLFAAGVALAFLLPPLCLAIAL-FNSLLLVLYAE-----TLKGTPGLGNASVAYLTGSTFLFGGAA- 150 (276)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHH-----HHhcccchhHHHHHHHHHHHHHHHHHH-
Confidence 99999999999999999999999889987776664 46667889985 689999989998887777655555432
Q ss_pred HHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHHh
Q 013845 271 FQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGAS 350 (435)
Q Consensus 271 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~ay~~~ll~g~~ 350 (435)
.+... ....+...+..++++.+++++||++|+|+|+++|+||+|+++|+|++.++.............+....
T Consensus 151 -----~~~~~--~~~~~~l~~~~fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~~~t~~~~~~~~~~~~~~~~~~~~~ 223 (276)
T PRK12882 151 -----VGTEG--LLALLVLFALAALATLAREIIKDVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVAVAASPLPYLL 223 (276)
T ss_pred -----hcccc--hHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHcCCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12211 11223334445566788999999999999999999999999999999887665554433332221111
Q ss_pred hhhhhHHHHHHHHHHHHHH-HHHHHHhhccCCChhhhHHH
Q 013845 351 SSFQLVKLVSIIGHSTLAF-LLWLRAQTVDLSNNASTYSF 389 (435)
Q Consensus 351 ~~~~~~~l~~~~g~~vl~~-~l~~~~~~~d~~~~~~~~~f 389 (435)
... +..+.+...+... .+....+..|.+|++.++++
T Consensus 224 ~~~---~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 260 (276)
T PRK12882 224 STF---GLWYLVLVAPADLVMLAAAYRSLKKTDPTASQKL 260 (276)
T ss_pred HHh---hHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 222 2333443333332 33334556677777666554
No 15
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=100.00 E-value=2e-33 Score=281.40 Aligned_cols=225 Identities=21% Similarity=0.244 Sum_probs=176.9
Q ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChH-HHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCC
Q 013845 108 LLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPK-YFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDL 186 (435)
Q Consensus 108 ~~~~l~ay~~l~Rp~~~~~~~l~~~~G~~lA~~~~~~~~~~-~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~nkp~R 186 (435)
-++++++|++++||+++..++.+.+.|.+.+.. .++... .+..++.++++..++++++|++|||+|+|+|++|+|+|
T Consensus 23 ~~~~~~~~~~l~RP~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~l~~~l~~~l~~~~~~~~Nd~~D~~~D~~~~~~R 100 (314)
T PRK07566 23 TTSIWKARLQLMKPITWFPPMWAFLCGAVSSGA--FGWTLENVLKLLAGMLLAGPLLCGTSQTLNDYFDREVDAINEPYR 100 (314)
T ss_pred cchHHHHHHHHhCCcchHHHHHHHHHHHHHcCC--CCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccCCCCC
Confidence 357789999999999999998888888776532 122221 11113446677888999999999999999999999999
Q ss_pred cccccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHHHHHHH-H
Q 013845 187 PLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQ-F 265 (435)
Q Consensus 187 Pl~sG~Is~~~A~~~~i~l~~lgl~l~~~lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g~~~~-~ 265 (435)
|+++|++|+++++.+++++.++++.+++.+|++...+++ .+++++++||. ||+++||+++++|+.+++.+|..+. .
T Consensus 101 pl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~l-~~~~~~~~Yt~--gP~~lK~~~~~g~i~vg~~~g~~~~~~ 177 (314)
T PRK07566 101 PIPSGAISLRWVLYLIAVLTVLGLAVAYLLGPWVFLAAL-LGLFLAWIYSA--PPLRLKQNGWLGNYAVGLSYEGLPWWA 177 (314)
T ss_pred CCCCceeCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHH-HHHHHHHHhcC--CccccccccchhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999998888987776664 57778999995 8999999998899988877765433 3
Q ss_pred HHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHHHHHHHH
Q 013845 266 SFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVS 344 (435)
Q Consensus 266 G~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~ay~~~ 344 (435)
|.+. .+. ...+...++..++..+++.+++++||++|+|+|+++|+||+|+++|++++.+++..++.++|++.
T Consensus 178 g~~~------~~~-~~~~~~~~l~~~~~~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a~~l~~~l~~~~~~~~ 249 (314)
T PRK07566 178 GAAA------FGA-GLPSWPIVILALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAARIACVVIDLFQLAV 249 (314)
T ss_pred HHHH------hcc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHcCCcccceeEcHHHHHHHHHHHHHHHHHHH
Confidence 3322 121 11233344555566677888999999999999999999999999999999988877777776654
No 16
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=100.00 E-value=1.5e-33 Score=278.55 Aligned_cols=259 Identities=18% Similarity=0.183 Sum_probs=194.0
Q ss_pred HHHHHHHHhhhccchHHHHH---HHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC--
Q 013845 109 LKKLHALYVFTRPFAMIGTI---VGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK-- 183 (435)
Q Consensus 109 ~~~l~ay~~l~Rp~~~~~~~---l~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~nk-- 183 (435)
++++++|+|++|++++.... ++.+.|.++|....++ +. .+++++++.+++++++|++||++|+|+|++|+
T Consensus 2 ~~~~~~y~~L~R~~kp~~~~l~~~p~~~g~~la~~~~~~--~~---~~~l~~~g~~l~~~a~~~~Nd~~D~~iD~~~~Rt 76 (282)
T PRK12848 2 QNRLLAYARLMRLDKPIGTLLLLWPTLWALWLAADGIPD--LW---VLVVFVLGVFLMRAAGCVINDYADRDFDGHVKRT 76 (282)
T ss_pred chhHHHHHHHHCccchHHHHHHHHHHHHHHHHHcCCCCC--HH---HHHHHHHHHHHHHHHHHHHHhhHHhccCCCCCCC
Confidence 35789999999988776554 4567788887543322 22 14567788899999999999999999999765
Q ss_pred CCCcccccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHHHHHH
Q 013845 184 PDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVY 263 (435)
Q Consensus 184 p~RPl~sG~Is~~~A~~~~i~l~~lgl~l~~~lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g~~~ 263 (435)
++||+|+|++|+++|..+++++.++++.+++.+|+.+..+++ .+.++.++|+. .||++.++++..+...|.++
T Consensus 77 ~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~~-~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~g~~~ 149 (282)
T PRK12848 77 KNRPLASGAVSEKEALALFVVLVLVAFLLVLTLNTLTIWLSV-AALALAWIYPF------MKRYTHLPQVVLGAAFGWGI 149 (282)
T ss_pred CCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHh------HHhcCcccHHHHHHHHHHHH
Confidence 489999999999999999999999999988888987777664 46667899985 79999889987777777666
Q ss_pred HHHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHHHHHHH
Q 013845 264 QFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGV 343 (435)
Q Consensus 264 ~~G~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~ay~~ 343 (435)
.+|+.+. ++.. +...+++.+...+|+.+.++.++++|+|+|+++|+||+|+++|+|++.+.... +.+....
T Consensus 150 ~~g~~a~------~~~~--~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~-~~~~~~~ 220 (282)
T PRK12848 150 PMAFAAV------QGSV--PLEAWLLFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRYDKLIIGLL-QLATLAL 220 (282)
T ss_pred HHHHHHH------hCCC--cHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhccccHHHHHHH-HHHHHHH
Confidence 6665442 2222 23344555667788999999999999999999999999999999988776533 3333333
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhccCCChhhhHHHHH
Q 013845 344 SVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYM 391 (435)
Q Consensus 344 ~ll~g~~~~~~~~~l~~~~g~~vl~~~l~~~~~~~d~~~~~~~~~f~~ 391 (435)
..+.+..... +..+.++..+....+.++...+|.+|+++|.++|+
T Consensus 221 ~~~~~~~~~~---~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~ 265 (282)
T PRK12848 221 LAWAGWLLGL---GWAYYWGLLVAAALFVYQQKLIRDREREACFKAFL 265 (282)
T ss_pred HHHHHHHhcC---cHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3333333322 23445566677778888888889888887765553
No 17
>PLN00012 chlorophyll synthetase; Provisional
Probab=100.00 E-value=9.3e-33 Score=281.35 Aligned_cols=217 Identities=21% Similarity=0.294 Sum_probs=165.2
Q ss_pred HHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHH---HHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCC
Q 013845 109 LKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKY---FMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPD 185 (435)
Q Consensus 109 ~~~l~ay~~l~Rp~~~~~~~l~~~~G~~lA~~~~~~~~~~~---l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~nkp~ 185 (435)
.+++++|++++||++++...+++++|.+.. +. +++.. ...++.++++..++++++|++|||+|+|+|++|+|+
T Consensus 82 ~~~~k~~l~L~RP~t~~~~~~~v~~G~~~~-g~---~~~~~~~~~~~ll~~ll~~~L~~~~an~iNDy~D~~iD~~~~~~ 157 (375)
T PLN00012 82 TDIWKIRLQLTKPVTWPPLVWGVLCGAAAS-GN---FHWTLEDVAKSIVCMLMSGPFLTGYTQTINDWYDREIDAINEPY 157 (375)
T ss_pred hHHHHHHHHHhCHHHHHHHHHHHHHHHHHc-CC---CCchhhhHHHHHHHHHHHHHHHHHHHHHHHCeecHhhhccCCCC
Confidence 467899999999999999999999998853 22 22221 112356778889999999999999999999999999
Q ss_pred CcccccccCHHHHHHHHHHHHHHHHHHHHHh-------chHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHH
Q 013845 186 LPLASGDLSMGTGLAITLTLSLTSLAIALSL-------QSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTV 258 (435)
Q Consensus 186 RPl~sG~Is~~~A~~~~i~l~~lgl~l~~~l-------g~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~ 258 (435)
||+++|++++++++.+..++..+++.+++.+ |++.+.+++ ++++++++||. ||+++||++++||+.+++.
T Consensus 158 Rpi~sG~Is~~~al~~~~~l~~~~l~l~~~L~~~~~~~~~~~~~l~l-~gi~l~~~YS~--pPl~lKr~~~~G~v~lG~~ 234 (375)
T PLN00012 158 RPIPSGAISENEVITQIWVLLLGGLGLAYTLDVWAGHDFPIVFYLAL-GGSLLSYIYSA--PPLKLKQNGWIGNYALGAS 234 (375)
T ss_pred CCcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH-HHHHHhhhhcC--CchhhhHhccHhHHHHHHH
Confidence 9999999999999997766666666555443 344444443 47778999995 8999999999999887766
Q ss_pred HHHHHHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHH
Q 013845 259 FGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALF 338 (435)
Q Consensus 259 ~g~~~~~G~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~ 338 (435)
++..+..+.++ +.|. ++...++..++.+++++++++.||++|+|+|+++|+||+||++|++++.+++...+.
T Consensus 235 ~~~lp~~~g~a-----~~g~---~s~~~illal~~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~~~a~~l~~~~l~ 306 (375)
T PLN00012 235 YISLPWWAGQA-----LFGT---LTPDVVVLTLLYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGVETAKWICVGSID 306 (375)
T ss_pred HHHHHHHHHHH-----HcCC---CCHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHcCCcccceeechHHHHHHHHHHHH
Confidence 65443322221 2232 233344455666778999999999999999999999999999999999988765444
Q ss_pred HH
Q 013845 339 FA 340 (435)
Q Consensus 339 ~a 340 (435)
+.
T Consensus 307 l~ 308 (375)
T PLN00012 307 IT 308 (375)
T ss_pred HH
Confidence 44
No 18
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=100.00 E-value=2.2e-33 Score=277.63 Aligned_cols=260 Identities=18% Similarity=0.199 Sum_probs=193.6
Q ss_pred HHHHHHHHHhhhccchHHH---HHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC-
Q 013845 108 LLKKLHALYVFTRPFAMIG---TIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK- 183 (435)
Q Consensus 108 ~~~~l~ay~~l~Rp~~~~~---~~l~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~nk- 183 (435)
.++++++|++++||+++.+ ..+++++|.++|.... ..++. .+++++++.+++++++|++|||+|+|+|++|+
T Consensus 3 ~~~~~~~~~~l~R~~kp~~~~l~~~~~~~g~~la~~~~-~~~~~---~~ll~~l~~~l~~~a~~~~Nd~~D~~iD~~~~R 78 (285)
T PRK12847 3 ILMKFLAYFKLMRLHKPIGILLVFFPTLFGLLLASHSL-LPDIS---LLVLFIIGSVLMRSAGCIINDIFDRKIDKHVAR 78 (285)
T ss_pred hHHHHHHHHHHHCcchHHHHHHHHHHHHHHHHHHhCcc-CCcHH---HHHHHHHHHHHHHHHHHHHHhHHHhhhccCCCc
Confidence 4567999999999998775 4567788888885432 13332 25678889999999999999999999999765
Q ss_pred -CCCcccccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHHHHH
Q 013845 184 -PDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLV 262 (435)
Q Consensus 184 -p~RPl~sG~Is~~~A~~~~i~l~~lgl~l~~~lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g~~ 262 (435)
++||+++|++|+++|+.+++++.++++.+++.+|+..+.+++ ++++++++||. .||++.+++++.+...+..
T Consensus 79 t~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~-~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~ 151 (285)
T PRK12847 79 TKNRPLASGALSVKQALILLFILLLIALVILLLLNKTTIYLSF-IAVILIVLYPL------MKRFFYWPQLFLGFTFNMG 151 (285)
T ss_pred ccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHhccc------cccCCcccHHHHHHHHHHH
Confidence 489999999999999999999999999988888987777765 46777999995 7999988998777666655
Q ss_pred HHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHHHHHH
Q 013845 263 YQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYG 342 (435)
Q Consensus 263 ~~~G~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~ay~ 342 (435)
+..|+.+. ++.. +...++..+...+|+.+.+++++++|+|+|+++|+||+|+++|++++.++........+.
T Consensus 152 ~l~~~~a~------~g~~--~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~ 223 (285)
T PRK12847 152 ILMAFAAV------QNQL--DIEAILLYIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGNKTRKYILRLYIISLIL 223 (285)
T ss_pred HHHHHHHH------cCCC--cHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhccccHHHHHHHHHHHHHH
Confidence 54554432 2222 233455566777889999999999999999999999999999999998877666555544
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhccCCChhhhHHHH
Q 013845 343 VSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFY 390 (435)
Q Consensus 343 ~~ll~g~~~~~~~~~l~~~~g~~vl~~~l~~~~~~~d~~~~~~~~~f~ 390 (435)
..+. +....... +.+ ++.++....+.++...+|.+|+++++++|
T Consensus 224 ~~~~-~~~~~~~~--~~y-~~~~~~~~~l~~~~~~~~~~~~~~~~~~f 267 (285)
T PRK12847 224 WLIL-GIISSLHN--IFY-LAILAAAGIFYYQYKLLDFDNPANCMYAF 267 (285)
T ss_pred HHHH-HHHhcCcH--HHH-HHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4332 33222211 122 23333345677777788888777665543
No 19
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=2.7e-33 Score=276.59 Aligned_cols=267 Identities=15% Similarity=0.115 Sum_probs=198.5
Q ss_pred HHHHHHHhhhccchHHHHHH---HHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC--C
Q 013845 110 KKLHALYVFTRPFAMIGTIV---GITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--P 184 (435)
Q Consensus 110 ~~l~ay~~l~Rp~~~~~~~l---~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~nk--p 184 (435)
+++++|+|++||+++.++.+ +.+.|.+++....+ ++. .+++++++..++++++|++||+.|+|+|++|+ +
T Consensus 5 ~~~~~y~~L~R~~Kp~~~~ll~~p~~~g~~la~~~~~--~~~---~~~~~~~g~~l~~~a~~~~Nd~~D~~iD~~~~RT~ 79 (294)
T PRK12873 5 IKLSPWFELLRWNKPTGRLILLIPAGWSLWLTPSAPP--SLL---LLLLIILGGLAVSGAGCIANDLWDRRIDRKVERTK 79 (294)
T ss_pred HhHHHHHHHhCccccchHHHHHHHHHHHHHHccCCCC--CHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCC
Confidence 46889999999998877755 44677666643222 222 25678899999999999999999999999876 4
Q ss_pred CCcccccccCHHHHHHHHHHHHHHHHHHHHHh----chHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHHH
Q 013845 185 DLPLASGDLSMGTGLAITLTLSLTSLAIALSL----QSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFG 260 (435)
Q Consensus 185 ~RPl~sG~Is~~~A~~~~i~l~~lgl~l~~~l----g~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g 260 (435)
+||+++|++|+++|+.+.+++.++++.+++.+ |+.+..+++ +++++..+||. +||++.+++++.+...+
T Consensus 80 ~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~n~l~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~vlg~~~a 152 (294)
T PRK12873 80 NRPLARGKISLKTAYSLLIVLLLLSLFVVLSLPQPSRNLCLSLAF-LALPPILIYPS------AKRWFAYPQAILALCWG 152 (294)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH-HHHHHHHHHHH------HHhccccchHHHHHHHH
Confidence 99999999999999999999999998887665 556666654 46667899995 79999999987776666
Q ss_pred HHHHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHHHH
Q 013845 261 LVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFA 340 (435)
Q Consensus 261 ~~~~~G~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~a 340 (435)
.++.+|+.++ .|. ..+....+++.+.+.+|+.+.+++++++|+|+|+++|+||+|+++|++.. .....+..+.
T Consensus 153 ~~~l~gw~Av-----~g~-~~~~~~~l~l~~~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~~~~-~~~~~~~~~~ 225 (294)
T PRK12873 153 FAVLIPWAAA-----EGS-LNGGWPLLFCWLATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGSNAL-KTVQICYFLT 225 (294)
T ss_pred hHHHHHHHHH-----hCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcChhhH-HHHHHHHHHH
Confidence 6666776432 232 22222334445667789999999999999999999999999999997544 4455555555
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhccCCC--hhhh-HHHHHHHHHHHH
Q 013845 341 YGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSN--NAST-YSFYMFIWKASV 398 (435)
Q Consensus 341 y~~~ll~g~~~~~~~~~l~~~~g~~vl~~~l~~~~~~~d~~~--~~~~-~~f~~~iw~l~~ 398 (435)
.++....+......+ ++.++..+.+..+.+|+..+|.+| +++| +.|..+.|-.+.
T Consensus 226 ~~ll~~~g~~~~l~~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~c~~~F~~n~~~G~~ 283 (294)
T PRK12873 226 SIFLALAAFIAQVGF---IFWPFWLIASIGMQRDILKLFPEKQSIKTIGNHFSNQVILGSL 283 (294)
T ss_pred HHHHHHHHHHhCCcH---HHHHHHHHHHHHHHHHHHHhCcCcccHHHHHHHHHhccHHHHH
Confidence 555556666555443 445566666778889988898877 4676 555566776543
No 20
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=100.00 E-value=1.5e-32 Score=274.91 Aligned_cols=266 Identities=16% Similarity=0.146 Sum_probs=197.5
Q ss_pred hhHHHHHHHHHHHhhh---ccchHHHHHHHHHHHHHHhcccC---CCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccc
Q 013845 104 FWDVLLKKLHALYVFT---RPFAMIGTIVGITSIAILPLQSF---ADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVE 177 (435)
Q Consensus 104 ~~~~~~~~l~ay~~l~---Rp~~~~~~~l~~~~G~~lA~~~~---~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e 177 (435)
+.+.+++++++|+|++ ||+......+++++|.++|.... ...++. .+++++++++++++++|++|||+|+|
T Consensus 22 ~~~~~~~~~~~y~~L~R~~kP~~~~l~~~p~~~G~~lA~~~~~~~~~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~Dr~ 98 (314)
T PRK12878 22 VDRRLPPWLRPYAQLARWDRPIGWWLLLWPCWWSAALAAGAAADLGLLLLW---HLFLFFVGAIAMRGAGCTYNDIVDRD 98 (314)
T ss_pred hhhhcchhHHHHHHHHccccchhhHHHHHHHHHHHHHhcccccCCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344778999999999 88888888899999999985421 123332 25678899999999999999999999
Q ss_pred ccccCC--CCCcccccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHH
Q 013845 178 IDKVNK--PDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCM 255 (435)
Q Consensus 178 ~D~~nk--p~RPl~sG~Is~~~A~~~~i~l~~lgl~l~~~lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i 255 (435)
+|++|+ ++||+++|++|+++++.+.+++.++|+.+.+..|++...+++ .++++.++||. .||++.++++..
T Consensus 99 iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~~~ 171 (314)
T PRK12878 99 IDAKVARTRSRPLPSGQVSRKQAKVFMVLQALVGLAVLLQFNWFAIALGI-ASLAIVAAYPF------MKRITWWPQFFL 171 (314)
T ss_pred cccCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHH------HHhcCCcchHHH
Confidence 998766 489999999999999999999999999988888887777765 56777999985 799998888766
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHH
Q 013845 256 VTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVY 335 (435)
Q Consensus 256 ~~~~g~~~~~G~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~ 335 (435)
+...+.++..|+++. .|. . +...+++.+...+|+...+.+++++|+|+|+++|+||+|+++|++++.++...
T Consensus 172 Gl~~~~~~l~g~~a~-----~g~-~--~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~ 243 (314)
T PRK12878 172 GLAFSWGALMGWAAH-----FGS-L--SLAAVLLYAGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGDHTKTWLVLF 243 (314)
T ss_pred HHHHHHHHHHHHHHH-----hCC-C--chHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhchhhHHHHHHH
Confidence 665555555665432 232 2 22334445566778889999999999999999999999999999999887644
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhccCCChhhhHHHHH
Q 013845 336 ALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYM 391 (435)
Q Consensus 336 l~~~ay~~~ll~g~~~~~~~~~l~~~~g~~vl~~~l~~~~~~~d~~~~~~~~~f~~ 391 (435)
..... ....+.+.....++. +.++...+...+.++..++|.+|++.|+++|+
T Consensus 244 ~~~~~-~~~~l~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~F~ 295 (314)
T PRK12878 244 YGLAV-LLMGLAFWLAGVPLL---ALLGLLAAAAHLAWQIARLDIDDPDQCLRLFK 295 (314)
T ss_pred HHHHH-HHHHHHHHHhcCcHH---HHHHHHHHHHHHHHHHHHcccCChHHHHHHHH
Confidence 43333 333333333333333 33344444556778888888877777766654
No 21
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=100.00 E-value=1.4e-32 Score=272.38 Aligned_cols=272 Identities=23% Similarity=0.306 Sum_probs=206.1
Q ss_pred HHHHHHHHHhhhccchHHHHH---HHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCC
Q 013845 108 LLKKLHALYVFTRPFAMIGTI---VGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKP 184 (435)
Q Consensus 108 ~~~~l~ay~~l~Rp~~~~~~~---l~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~nkp 184 (435)
.+++++.+.+++|+++++.+. .+..+|..++....++ +...++++++++++++++|++||++|+|+||+|+|
T Consensus 6 ~~~~~~~~~~l~r~~r~i~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~r 80 (289)
T COG0382 6 LPNKLKALLKLLRLDRPIFNLLLLLPALLGLLLAASGLPS-----LKLLLLAFLAFFLARSAGYVINDLADREIDRINPR 80 (289)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCch-----HHHHHHHHHHHHHHHHHhHHHHHHhhhhccCCCCC
Confidence 455666666666666655554 4456666666422221 22367788999999999999999999999999998
Q ss_pred --CCcccccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHHHHH
Q 013845 185 --DLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLV 262 (435)
Q Consensus 185 --~RPl~sG~Is~~~A~~~~i~l~~lgl~l~~~lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g~~ 262 (435)
+||+|||++|+++|+.+.+++.++++.+++.+|++++.+.+ ++.++.+.|+. +||.+.+++++++..++..
T Consensus 81 t~~RPl~sG~vS~~~a~~~~~~~~~~~~~~a~~l~~~~~~l~~-~~~~l~~~Y~~------~Kr~~~~~~~~lg~~~~~~ 153 (289)
T COG0382 81 TKNRPLPSGRVSVKEALLLAILLLLLGLALALLLNPLAFLLSL-AALVLALAYPF------LKRFTFLPQLVLGLAFGLG 153 (289)
T ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHH------hhcCCchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988776654 68889999964 8999999999999888887
Q ss_pred HHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHHHHHH
Q 013845 263 YQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYG 342 (435)
Q Consensus 263 ~~~G~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~ay~ 342 (435)
+..|+.+. ++. .+...+++.++..+|+++++++||++|+|+|++.|+||+|+.+|++++.+++.... ...+
T Consensus 154 ~~~g~~a~------~~~--~~~~~~~l~~~~~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~~G~~~a~~l~~~~~-~~~~ 224 (289)
T COG0382 154 ALAGAAAV------GGS--LPLLAWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALALLLL-LASA 224 (289)
T ss_pred HHHHHHHH------hCc--cchHHHHHHHHHHHHHHHHHHHHhccCccchHhcCCcchHHHhCchhHHHHHHHHH-HHHH
Confidence 77776543 221 23345666777888999999999999999999999999999999999988777665 3333
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhccCCChhhhHHHHHHHHHHHHHHHH
Q 013845 343 VSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKASVIDLF 402 (435)
Q Consensus 343 ~~ll~g~~~~~~~~~l~~~~g~~vl~~~l~~~~~~~d~~~~~~~~~f~~~iw~l~~~~yl 402 (435)
.....+...... ...+..++.+.+..++++...++.++++.+.+++.....+-...++
T Consensus 225 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (289)
T COG0382 225 LLVLLGLLAGLL--GLIYLLGLLVAALLLLYQILIVDVRDPPACFALFDVNLLLGLLLFI 282 (289)
T ss_pred HHHHHHHHHhhc--hHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHhhHHHHHHHH
Confidence 333333333222 1345666677777888888888887877787877665554444433
No 22
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=2.5e-32 Score=269.82 Aligned_cols=264 Identities=16% Similarity=0.149 Sum_probs=192.6
Q ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHhc------cc---CCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccc
Q 013845 110 KKLHALYVFTRPFAMIGTIVGITSIAILPL------QS---FADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDK 180 (435)
Q Consensus 110 ~~l~ay~~l~Rp~~~~~~~l~~~~G~~lA~------~~---~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~ 180 (435)
++++.|.++.|.++.+.++.-+..|.++|. ++ .+ ++ ..+++..++.+.+++++|++||+.|+|+|+
T Consensus 2 ~~~~~~~~~i~~~ht~Falpfa~~~~~~a~~~~~~~~~~~~~~--~~---~~~~~~~~a~~~~Rsag~~~Nd~~DrdiD~ 76 (300)
T PRK12876 2 MRIKYFQQLINCKYALFSALFLSASTVFALSLPEISFSLFSLG--GI---KTISLGGSAFFCARTVGIIVNQIIDCAIDK 76 (300)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcCCC--CH---HHHHHHHHHHHHHHHHHHHHHhHHHhcccC
Confidence 468999999999888877776788888884 22 21 22 235678899999999999999999999999
Q ss_pred cCC--CCCcccccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHH
Q 013845 181 VNK--PDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTV 258 (435)
Q Consensus 181 ~nk--p~RPl~sG~Is~~~A~~~~i~l~~lgl~l~~~lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~ 258 (435)
+|+ ++||+|+|++|+++|+.+.+++.+++++++..+|+.+..++. +++++.++||. +||++++++++.|..
T Consensus 77 ~~~RT~~RPLpsG~is~~~A~~~~~~~~~~~~~l~~~ln~l~~~l~~-~~~~~~~iY~~------~KR~t~~~~~vLGl~ 149 (300)
T PRK12876 77 KNPRTSSRVLPAKLLSINFSMLLLTLCSFLFLSLCWLLNPLCFSLAV-LSTLLMIIYPY------TKRVTFLCHWILGLV 149 (300)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHh------HhcCCchhHHHHHHH
Confidence 998 499999999999999999988888888888889998887775 46666789995 899999999877776
Q ss_pred HHHHHHHHHHHHHHHHhhCCCccchH--HHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHH
Q 013845 259 FGLVYQFSFFIHFQKYVLGRPVVITR--PLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYA 336 (435)
Q Consensus 259 ~g~~~~~G~~~~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l 336 (435)
.+..+..|+.++ .+.+..+.. ..++......+|..++|++|++||+|+|++.|+||+|+++|++++.++...+
T Consensus 150 ~~~~~l~~~~Av-----~~~~~~~~l~~~~~lw~~~~~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~~~a~~ia~~~ 224 (300)
T PRK12876 150 YYLAILMNFFAI-----IETPLSFSLFCMASLWGISFGMIIAANDIIYAIQDLEFDRKEGLFSIPARFGEKKAIRIASAN 224 (300)
T ss_pred HHHHHHHHHHHH-----hcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHhhHHHcCCccchHHHCchhHHHHHHHH
Confidence 666555665432 233211100 1122233445667799999999999999999999999999999887766666
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--HHHHHHHHhhccCCChhhhHHHHHH
Q 013845 337 LFFAYGVSVIVGASSSFQLVKLVSIIGHSTL--AFLLWLRAQTVDLSNNASTYSFYMF 392 (435)
Q Consensus 337 ~~~ay~~~ll~g~~~~~~~~~l~~~~g~~vl--~~~l~~~~~~~d~~~~~~~~~f~~~ 392 (435)
..+..++.++.+......+. .+..+..+. ...+.++.+.+|.++++.|.+||+.
T Consensus 225 ~~l~~~~l~~~g~~~~l~~~--~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~F~~ 280 (300)
T PRK12876 225 LIASAIAYLLIGYFVSNKKI--FYLCSLVPLTVILKTIKHYSLIDKKKSTLEQKFFLG 280 (300)
T ss_pred HHHHHHHHHHHHHHhhccHH--HHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHh
Confidence 66555555555655544432 233333222 2223455466677777777776653
No 23
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=6.6e-32 Score=268.43 Aligned_cols=265 Identities=15% Similarity=0.229 Sum_probs=195.9
Q ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC-----C
Q 013845 110 KKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK-----P 184 (435)
Q Consensus 110 ~~l~ay~~l~Rp~~~~~~~l~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~nk-----p 184 (435)
++++.|++.+||+++..+..++++|.++|.....++++.. .++++++++++++++|.+|||+|.|.|+.|+ |
T Consensus 2 ~~~~~~~~~~Rp~tl~~s~~~v~lG~a~a~~~~~~f~~~~---~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~rt~~~ 78 (296)
T PRK05951 2 QNAKLFFIFTRPWSFVMTAIVAFFSIAYGYYLFRSFDPLL---GALMLLGYFLLHASLNVFNDYKDYVLDCDHHETTGYR 78 (296)
T ss_pred ccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCcCHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCccccccCCC
Confidence 4688999999999999999999999999965434566642 5678899999999999999999955444443 7
Q ss_pred CCcccccccCHHHHHHHHHHHHHHHHHHH----HHhchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHHH
Q 013845 185 DLPLASGDLSMGTGLAITLTLSLTSLAIA----LSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFG 260 (435)
Q Consensus 185 ~RPl~sG~Is~~~A~~~~i~l~~lgl~l~----~~lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g 260 (435)
+||+++|++|+++++...+++..+++.++ ...|++.+.++ +++++.++.||. ||+++|++++ |++.++..+|
T Consensus 79 ~r~l~~G~is~~~~~~~~~~~~~ia~~~g~~l~~~~~~~~l~l~-~~~~~~~~~Yt~--~P~~lky~gl-Ge~~v~~~~g 154 (296)
T PRK05951 79 QHPIQAGIMTLGHLRVLGIALGAIALQLGWSLVLDRGIGAVTLA-LLGVFLWTCYMG--PPFFLKYRWL-GEHLVFYAWS 154 (296)
T ss_pred CCccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH-HHHHHHHHHHcC--CCcccCCCCc-hHHHHHHHHH
Confidence 89999999999999999888766665443 23465555555 468889999994 8999998876 9998988888
Q ss_pred HHHHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHHHH
Q 013845 261 LVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFA 340 (435)
Q Consensus 261 ~~~~~G~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~a 340 (435)
+..++|.+.. + ++.. +...+.......+++..+.+.||+||+|+|++.|+||+|+++|+|++ ++...+...+
T Consensus 155 ~~~vlg~~~~-~----~~~~--~~~~~~~sl~~~l~~~~il~~n~~~D~e~D~~~G~~Tlav~lG~~~a-~~~~~~~~~~ 226 (296)
T PRK05951 155 HMLVMGLIYV-W----LGNL--SSPNLLAGVPLGLLMALVLLSNNLRDIEDDERKGIPTLAVIFGRRGA-ALYIFALLSP 226 (296)
T ss_pred HHHHHHHHHH-H----hCcc--cHHHHHHHHHHHHHHHHHHHHCCCccchhHHHCCCeeeeeeEcHhhH-HHHHHHHHHH
Confidence 7777776543 2 2222 23344555666777788899999999999999999999999999999 6666666777
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhccCCChhhhHHH
Q 013845 341 YGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSF 389 (435)
Q Consensus 341 y~~~ll~g~~~~~~~~~l~~~~g~~vl~~~l~~~~~~~d~~~~~~~~~f 389 (435)
|+..+........+++.++++++.......+.++.++.|.++.+.+.+.
T Consensus 227 ~~~~~~~~~~g~~~~~~l~~ll~lp~~~~~~~~~~~~~~~~~~~~~~~~ 275 (296)
T PRK05951 227 YVILQILLIAILTPLISLWALLSLLVAYALCLWQLRKFPPDPDEATVQL 275 (296)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhCcccccHHHHHH
Confidence 7766555544444555555555554444444555555555554444444
No 24
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=100.00 E-value=2.7e-32 Score=274.30 Aligned_cols=254 Identities=18% Similarity=0.287 Sum_probs=177.8
Q ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccC-CCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCC
Q 013845 108 LLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSF-ADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDL 186 (435)
Q Consensus 108 ~~~~l~ay~~l~Rp~~~~~~~l~~~~G~~lA~~~~-~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~nkp~R 186 (435)
..+++++|++++||++++ ..++.++|.++|.... +++....+ .+...++.+.+..+++|++|||+|+|+|++|+|.|
T Consensus 8 ~~~~~k~~l~L~kP~t~l-~~~p~~~g~~lA~g~~~~~~~~~~l-~l~~~~~~~~L~~~a~~~iND~~D~~~D~~n~rtR 85 (331)
T PRK12392 8 FVDKIRAHLELLDPVTWI-SVFPCLAGGVMASGAMQPTLHDYLL-LLALFLMYGPLGTGFSQSVNDYFDLELDRVNEPTR 85 (331)
T ss_pred hhHHHHHHHHHHCHHHHH-HHHHHHHHHHHHcCCCCCChhHHHH-HHHHHHHHHHHHHHHHhHHhcceeecccccCCCCC
Confidence 567899999999999888 5666777777875321 22221110 12223444456667899999999999999999999
Q ss_pred cccccccCHHHHHHHHHHHHHHHHHHHHHhch-------HHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHH
Q 013845 187 PLASGDLSMGTGLAITLTLSLTSLAIALSLQS-------PPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVF 259 (435)
Q Consensus 187 Pl~sG~Is~~~A~~~~i~l~~lgl~l~~~lg~-------~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~ 259 (435)
|+++|++|+++++.+.+++.++++.++..++. +.+++..+++++++++||. ||+++||.++.++..++..+
T Consensus 86 pl~~G~is~~~al~~~~~l~~la~~lg~~L~~~~~~~~~~~il~~~~~~l~l~~~YS~--~P~~lKr~~~~g~~~vGl~~ 163 (331)
T PRK12392 86 PIPSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVIISSILAGLFVAYIYSA--PPLKLKKNILTSAPAVGFSY 163 (331)
T ss_pred CCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHhhhhcC--CchhhhccchhHHHHHHHHH
Confidence 99999999999999999999988887766542 2222322457788999995 89999999888888777666
Q ss_pred HHHHHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHHH
Q 013845 260 GLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFF 339 (435)
Q Consensus 260 g~~~~~G~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~ 339 (435)
+.....+..+ ..+. .+...++..+...+|+.+++++||++|+|+|++.|+||+|+++|++++.++......+
T Consensus 164 ~~~~~~~~~a-----~~g~---~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~~~a~~i~~~~~~~ 235 (331)
T PRK12392 164 GFITFLSANA-----LFSD---IRPEVVWLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNTFLVSFIIIDL 235 (331)
T ss_pred HHHHHHHHHH-----HhcC---CCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcHhhHHHHHHHHHHH
Confidence 6544333322 2232 2334445566677889999999999999999999999999999999998876655545
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHh
Q 013845 340 AYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQ 376 (435)
Q Consensus 340 ay~~~ll~g~~~~~~~~~l~~~~g~~vl~~~l~~~~~ 376 (435)
..+..+..+.....++. +....++++..+.+|.+
T Consensus 236 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~q~~ 269 (331)
T PRK12392 236 VFAVFAWLAWSWGFTVL---MYFILVGLVLNIVIQIQ 269 (331)
T ss_pred HHHHHHHHHHHhcccHH---HHHHHHHHHHHHHHHHH
Confidence 55544444554444332 22233334444555544
No 25
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=100.00 E-value=5.2e-32 Score=267.33 Aligned_cols=257 Identities=17% Similarity=0.186 Sum_probs=186.5
Q ss_pred HHHHhhhccchHHHH---HHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC--CCCc
Q 013845 113 HALYVFTRPFAMIGT---IVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PDLP 187 (435)
Q Consensus 113 ~ay~~l~Rp~~~~~~---~l~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~nk--p~RP 187 (435)
++|.|++|++++... .++..+|..+|.......++. .+++.+++..++++++|++|||+|+|+|++|+ |+||
T Consensus 2 ~~y~~l~R~~kp~~~~l~~~~~~~g~~la~~~~~~~~~~---~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RP 78 (281)
T TIGR01474 2 LPYAKLMRADKPIGTLLLLWPCLWSLLLAAQAGGIPPLY---LLGLFTVGAILMRGAGCVINDIWDRDFDPQVERTKSRP 78 (281)
T ss_pred hHHHHHHccccHHHHHHHHHHHHHHHHHHhcccCCCcHH---HHHHHHHHHHHHHHHHHHHHhHhhhcccccCCcccCCC
Confidence 568888888776555 455678888874311111222 14567788899999999999999999999765 4899
Q ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHHHHHHHHHH
Q 013845 188 LASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSF 267 (435)
Q Consensus 188 l~sG~Is~~~A~~~~i~l~~lgl~l~~~lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g~~~~~G~ 267 (435)
+|+|++|+++|+.+++++.++|+.+++.+|+.+..+++ +++++.+.||. .||++.++++..+...+..+..|+
T Consensus 79 l~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~~-~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~~~~g~ 151 (281)
T TIGR01474 79 LASGAVSVRQAILFLLVQLLVALGVLLQLNPLTILLGV-ASLALVATYPF------MKRITYWPQLVLGLAFGWGALMGW 151 (281)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHhch------hcccccccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998888988777765 57777999995 899999999877766666666675
Q ss_pred HHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHH
Q 013845 268 FIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIV 347 (435)
Q Consensus 268 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~ay~~~ll~ 347 (435)
++. .| .. +...+++.....+|+.+.+++++++|+|+|+++|+||+|+++|++++.+.... ..+......+.
T Consensus 152 ~a~-----~g-~~--~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~-~~~~~~~~~~~ 222 (281)
T TIGR01474 152 AAV-----TG-DL--STAAWVLYLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNTKPWLGGL-YALMILLLALA 222 (281)
T ss_pred HHH-----cC-CC--cHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhhhHHHHHHH-HHHHHHHHHHH
Confidence 432 23 22 22334345566788999999999999999999999999999999887554333 33332333333
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHhhccCCChhhhHHHHH
Q 013845 348 GASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYM 391 (435)
Q Consensus 348 g~~~~~~~~~l~~~~g~~vl~~~l~~~~~~~d~~~~~~~~~f~~ 391 (435)
+...... .++.++..+.+..+.++..++|.+|+++++++|+
T Consensus 223 ~~~~~~~---~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~ 263 (281)
T TIGR01474 223 GLIAGLG---PVYYLGLAAAALLLIRQIATLDIRDPENCLKLFK 263 (281)
T ss_pred HHHhCCc---HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3333322 3444555566777788877888777777665543
No 26
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=100.00 E-value=9.3e-32 Score=268.52 Aligned_cols=224 Identities=21% Similarity=0.307 Sum_probs=174.0
Q ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHH---HHHHHHHHHHHHHHHHHHhhhhhcccccccccCCC
Q 013845 108 LLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKY---FMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKP 184 (435)
Q Consensus 108 ~~~~l~ay~~l~Rp~~~~~~~l~~~~G~~lA~~~~~~~~~~~---l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~nkp 184 (435)
..+++++|++++||++++.+.++++.|...+. .+++.. ...++.+++++.++++++|.+|||+|+|.|+.|+|
T Consensus 12 ~~~~~~~~~~l~RP~~~~~~~~~~~~G~~~~~----~~~~~~~~~~~~ll~~ll~~~l~~~~~n~~NDy~D~d~D~~~~~ 87 (306)
T TIGR02056 12 ETNIWKIRLQLMKPITWIPLIWGVVCGAAASG----NFHWSLEDVAKAALCMLLSGPCLTGYTQTINDFYDRDIDAINEP 87 (306)
T ss_pred chhHHHHHHHHcChHhhHHHHHHHHHHHHHcC----CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccCCC
Confidence 45678999999999999999999999988642 222221 11234456788999999999999999999999999
Q ss_pred CCcccccccCHHHHHHHHHHHHHHHHHHHHHhc-------hHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHH
Q 013845 185 DLPLASGDLSMGTGLAITLTLSLTSLAIALSLQ-------SPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVT 257 (435)
Q Consensus 185 ~RPl~sG~Is~~~A~~~~i~l~~lgl~l~~~lg-------~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~ 257 (435)
+||+++|++++++++.+++.+.++++.+++.+. ++.+.++ +++++.+++||. ||+++||++++|++.+++
T Consensus 88 ~Rpi~~G~is~~~a~~~~~~l~~~~~~lg~~l~~~~~~~~~~~~~l~-~~~~~~~~~Yt~--gP~~lk~~g~~G~i~vg~ 164 (306)
T TIGR02056 88 YRPIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFPNVFVLA-LFGSFIAFIYSA--PPLKLKQNGWLGNFALGA 164 (306)
T ss_pred CCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHH-HHHHHHHHHHcC--ChhhhhhcccHHHHHHHH
Confidence 999999999999999999888888877765542 3444444 357788999995 899999999889988876
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHH
Q 013845 258 VFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYAL 337 (435)
Q Consensus 258 ~~g~~~~~G~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~ 337 (435)
.++..+..+.+. ..|. ++...++..+..++|+.++++.||++|+|+|++.|+||+|+++|+|++.+++..+.
T Consensus 165 ~~~~~~~~~~~a-----~~g~---~~~~~~l~~~~~~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~~~a~~~~~~l~ 236 (306)
T TIGR02056 165 SYIALPWWAGHA-----LFGE---LNPDIAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWICVGAI 236 (306)
T ss_pred HHHHHHHHHHHH-----HhCC---CcHHHHHHHHHHHHHHHHHHHHHHccChHHHHHcCCcCcchhcChHHHHHHHHHHH
Confidence 666544443322 1232 23334455566677899999999999999999999999999999999999888776
Q ss_pred HHHHHHHHH
Q 013845 338 FFAYGVSVI 346 (435)
Q Consensus 338 ~~ay~~~ll 346 (435)
..++...+.
T Consensus 237 ~~~~~~~~~ 245 (306)
T TIGR02056 237 DIFQGLIAA 245 (306)
T ss_pred HHHHHHHHH
Confidence 666655433
No 27
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=100.00 E-value=3.1e-31 Score=263.61 Aligned_cols=267 Identities=15% Similarity=0.106 Sum_probs=185.7
Q ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC--CC
Q 013845 108 LLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PD 185 (435)
Q Consensus 108 ~~~~l~ay~~l~Rp~~~~~~~l~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~nk--p~ 185 (435)
.+.++++|++++||++......++++|.++|.+.. .++. .+++++++..++++++|++|||+|+|+|++|+ |+
T Consensus 6 ~~~~~~~y~~L~rp~~~~~~~~~~~~G~~la~~~~--~~~~---~~~l~~l~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~ 80 (296)
T PRK04375 6 SRATLKDYLALTKPRVISLNLFTALGGMLLAPPGV--PPLL---LLLLTLLGIALVAGAAGALNNYIDRDIDAKMERTKN 80 (296)
T ss_pred hhhhHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCC--CCHH---HHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCccCC
Confidence 45679999999999999999999999999985432 3332 24567889999999999999999999999987 69
Q ss_pred CcccccccCHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHHHH-HH
Q 013845 186 LPLASGDLSMGTGLAITLTLSLTSLAIALS-LQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGL-VY 263 (435)
Q Consensus 186 RPl~sG~Is~~~A~~~~i~l~~lgl~l~~~-lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g~-~~ 263 (435)
||+++|++|+++|+.+++++.++|+.+++. .|..+..++++..+.+.++||. ++||++. +|..+++..|. ++
T Consensus 81 Rpl~sG~is~~~a~~~~~~l~~~g~~l~~~l~~~~~~~l~~~~~~~~~~~Ys~-----~lKr~~~-~~~~v~~~~g~~~~ 154 (296)
T PRK04375 81 RPLVTGRISPREALIFGLVLGVLGFLLLGLFVNPLAAWLTLAGIFFYVVVYTL-----WLKRRTP-QNIVIGGAAGAMPP 154 (296)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcc-----chhcCCc-cchHHHHHHHHhHH
Confidence 999999999999999999999999888754 5766665544323335678985 4899996 57767766553 44
Q ss_pred HHHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHHHHHHH
Q 013845 264 QFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGV 343 (435)
Q Consensus 264 ~~G~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~ay~~ 343 (435)
..|+++. .| .. +...+++.+...+|+...+..++++|+|||+++|+||+|+++|++++.+.......+....
T Consensus 155 l~g~~a~-----~g-~~--~~~~~~l~~~~~lw~~~~~~~~~~~d~~D~~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~ 226 (296)
T PRK04375 155 LIGWAAV-----TG-SL--SWEALILFLIIFLWTPPHFWALAIFRKDDYAAAGIPMLPVVKGIRVTKRQILLYTVLLVAV 226 (296)
T ss_pred HHHHHHh-----CC-CC--CHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHcCCCccceeeCHHHHHHHHHHHHHHHHHH
Confidence 4565432 12 22 3334455666778888889999999999999999999999999998877654443332222
Q ss_pred HHHHHHhhhhhhHHHHHHH-HHHHHHHHHHHHHhhccCCChhhh-HHHHHHHHHH
Q 013845 344 SVIVGASSSFQLVKLVSII-GHSTLAFLLWLRAQTVDLSNNAST-YSFYMFIWKA 396 (435)
Q Consensus 344 ~ll~g~~~~~~~~~l~~~~-g~~vl~~~l~~~~~~~d~~~~~~~-~~f~~~iw~l 396 (435)
.++.......++ .+.+ +..+.+..+.++.+..+.+|++.+ +.|+...|.+
T Consensus 227 ~~~~~~~~~~~~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~F~~s~~~~ 278 (296)
T PRK04375 227 SLLPVLLGMAGL---LYLVVALLLGAWFLYYAWRLYRKDDRKWARKLFRYSINYL 278 (296)
T ss_pred HHHHHHHhccCH---HHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHH
Confidence 222222111222 3333 222233344455555666665554 3444444443
No 28
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=100.00 E-value=5e-31 Score=260.07 Aligned_cols=263 Identities=14% Similarity=0.149 Sum_probs=181.9
Q ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC--CCCcc
Q 013845 111 KLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PDLPL 188 (435)
Q Consensus 111 ~l~ay~~l~Rp~~~~~~~l~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~nk--p~RPl 188 (435)
++++|+|++||++.....++++.|.++|.+.. .++. .+++.+++..++++++|++|||+|+|+|++|+ |+||+
T Consensus 1 ~~~~~~~l~rp~~~~~~~~~~~~g~~la~~~~--~~~~---~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl 75 (279)
T PRK12869 1 KIKAYLKLLKPRVIWLLDLAAVAGYFLAAKHG--VSWL---PLIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPT 75 (279)
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHhccCC--CCHH---HHHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCc
Confidence 46899999999999999999999999985432 2332 24567789999999999999999999999987 69999
Q ss_pred cccccCHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHHHHHHHHHH
Q 013845 189 ASGDLSMGTGLAITLTLSLTSLAIALS-LQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSF 267 (435)
Q Consensus 189 ~sG~Is~~~A~~~~i~l~~lgl~l~~~-lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g~~~~~G~ 267 (435)
|+|++|+++|+.+++++.++|+.++.. +|+.+.....+..+++.++||. ++||++++ |..+++..|..+++|.
T Consensus 76 ~sG~is~~~a~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~Yt~-----~lKr~~~~-~~~v~~~~g~~~~l~g 149 (279)
T PRK12869 76 PVGLVNRKEALAVGSALSALGTALGFLLLGPLTALFIALGWFFYAVVYTI-----WLKPRTWL-NIVIGGFAGNAAALAG 149 (279)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-----ccccCChH-HHHHHHHHHHHHHHHH
Confidence 999999999999999999999988876 7876543333445677889995 48999985 6667777666555444
Q ss_pred HHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHH
Q 013845 268 FIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIV 347 (435)
Q Consensus 268 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~ay~~~ll~ 347 (435)
+... .| .. +...+++.+.+.+|..+.....+++|+|+|+++|+||+|+++|++++.+....+..+........
T Consensus 150 ~~a~----~g-~~--~~~~~ll~~~~~~w~~~~~~~l~~~d~edd~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~ 222 (279)
T PRK12869 150 YASG----TG-SL--DLEAVLLSFLIYLWTPGHIWSLALKYREDYRRAGVPMLPAVVGEKTSVRAISISNALMIPYILLL 222 (279)
T ss_pred HHHH----hC-CC--CHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHcCCeecceeecHHHHHHHHHHHHHHHHHHHHHH
Confidence 3321 12 22 23344445566667766666667899999999999999999999998876655544333322222
Q ss_pred HHhhhhhhHHHHHHHHHHHHHH-HHHHHHhhccCCChhhhHH-HHHHHHH
Q 013845 348 GASSSFQLVKLVSIIGHSTLAF-LLWLRAQTVDLSNNASTYS-FYMFIWK 395 (435)
Q Consensus 348 g~~~~~~~~~l~~~~g~~vl~~-~l~~~~~~~d~~~~~~~~~-f~~~iw~ 395 (435)
+. ... +.++.++..+... .+..+.+.++.++++++++ |+..+|.
T Consensus 223 ~~-~~~---g~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~s~~~ 268 (279)
T PRK12869 223 YL-YYI---GLIGLILVAILSAALMATSIRALLNPTKEEAWKMFKASSPY 268 (279)
T ss_pred HH-hhc---cHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHH
Confidence 22 222 2344444433333 3444445555555544433 3333443
No 29
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=100.00 E-value=4.1e-31 Score=260.35 Aligned_cols=205 Identities=24% Similarity=0.324 Sum_probs=163.2
Q ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCCcccc
Q 013845 111 KLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLAS 190 (435)
Q Consensus 111 ~l~ay~~l~Rp~~~~~~~l~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~nkp~RPl~s 190 (435)
++++|++++||+++....++.+.|.+++.+..++ +. .+++++++.++.++++|++||++|+|+|++|+|+||+++
T Consensus 2 ~l~~~~~l~Rp~~~~~~~~~~~~G~~la~~~~~~--~~---~~~l~~~~~~~~~~a~~~~Nd~~D~~~D~~n~~~Rpl~s 76 (277)
T PRK12883 2 ELKAFIEITRPHNCILAGIVGILGSLVALGGIPP--IK---TLILIFLVVYLGCSGGNTINDYFDYEIDKINRPNRPLPR 76 (277)
T ss_pred CHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCc--HH---HHHHHHHHHHHHHHHHhHHHhhhhHhccccCCCCCCCCC
Confidence 3678999999999999999999999888543222 21 134567788899999999999999999999999999999
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHHHHHHHHHHHHH
Q 013845 191 GDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIH 270 (435)
Q Consensus 191 G~Is~~~A~~~~i~l~~lgl~l~~~lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g~~~~~G~~~~ 270 (435)
|++++++++.++.++.++|+.+++.+|++.+.+++ .+.+++++|+. ++||++.++|+++++..|..+..|....
T Consensus 77 G~is~~~a~~~~~~l~~~g~~l~~~~~~~~~~~~~-~~~~~~~~Y~~-----~~k~~~~lg~~~vg~~~g~~~~~g~~a~ 150 (277)
T PRK12883 77 GAMSRKAALYYSLLLFAVGLALAYLINIEAFLFAL-GAYVLMFLYAW-----KLKPLPFIGNVVVALLTGATPIYGAIAV 150 (277)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhh-----cccCCcchhhHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999988888988777664 46678999996 5899888899999888876655665321
Q ss_pred HHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHH
Q 013845 271 FQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYA 336 (435)
Q Consensus 271 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l 336 (435)
+. ..+ ..+. .....++..++++.||++|+|+|+++|+||+|+++|++++.++....
T Consensus 151 ------~~-~~~--~~~~-~~~~fl~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~~ 206 (277)
T PRK12883 151 ------GR-IGL--AGYL-AICAFLVNVAREIMKDIEDIEGDKAKGAKTLPIIIGKKRAAYIGAIF 206 (277)
T ss_pred ------cc-ccH--HHHH-HHHHHHHHHHHHHHhhhhhhccHHHcCCcCcChHhcHHHHHHHHHHH
Confidence 21 111 1122 12234456678899999999999999999999999999998865544
No 30
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=100.00 E-value=2.6e-30 Score=256.58 Aligned_cols=232 Identities=19% Similarity=0.197 Sum_probs=181.6
Q ss_pred HHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccc--cccc--cCCCCCc
Q 013845 112 LHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADV--EIDK--VNKPDLP 187 (435)
Q Consensus 112 l~ay~~l~Rp~~~~~~~l~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~--e~D~--~nkp~RP 187 (435)
+++|++++||+++..+.+++++|.++|... ..+++. .+++++++.+++++++|.+|||+|+ |+|+ .++|+||
T Consensus 3 ~~~~~~~~Rp~~~~~~~~p~l~G~~~a~~~-~~~~~~---~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~~r~ 78 (293)
T PRK06080 3 FKAWLELARPKTLPAAFAPVLVGTALAYWL-GSFHPL---LALLALLAALLLQIATNLANDYGDYVKGTDTEDRVGPLRA 78 (293)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHc-CCccHH---HHHHHHHHHHHHHHHHHHHHhHHHhccCCCcccccCCccc
Confidence 678999999999999999999999998532 334543 2567788999999999999999999 5675 4568999
Q ss_pred ccccccCHHHHHHHHHHHHHHHHHHHH----HhchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHHHHHH
Q 013845 188 LASGDLSMGTGLAITLTLSLTSLAIAL----SLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVY 263 (435)
Q Consensus 188 l~sG~Is~~~A~~~~i~l~~lgl~l~~----~lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g~~~ 263 (435)
+++|++|+++++.++..+.+++++++. ..+++.+.+++ ++++.+++||. ||.|+|++++ ||+.++..+|...
T Consensus 79 l~~G~is~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~-~~~~~~~~Ys~--~p~~~~~~gl-ge~~~~~~~G~~~ 154 (293)
T PRK06080 79 IGRGGISPKQVKRAAIAFFGLAALLGLYLVAVSGWWLLLLGL-LCIAAAILYTG--GPKPYGYTGL-GELFVGVFFGLVI 154 (293)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHhhhhcC--CCCccCCCCc-HHHHHHHHHHHHH
Confidence 999999999999888877776655543 34655555543 57778899995 8889988875 8998888888766
Q ss_pred HHHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHHHHHHH
Q 013845 264 QFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGV 343 (435)
Q Consensus 264 ~~G~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~ay~~ 343 (435)
+.|.+.. + .+. .+...++..++..+++.++++.||++|+|+|++.|+||+|+++|++++.+++..++.++|+.
T Consensus 155 ~~~~~~~-~----~~~--~~~~~~~~~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~~ 227 (293)
T PRK06080 155 VLGTYYL-Q----AGT--VDSAVFLPALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAYLC 227 (293)
T ss_pred HHHHHHH-h----cCC--CCHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHHH
Confidence 6554332 1 111 23345666777788899999999999999999999999999999999999999999999887
Q ss_pred HHHHHHhhhhhhHHH
Q 013845 344 SVIVGASSSFQLVKL 358 (435)
Q Consensus 344 ~ll~g~~~~~~~~~l 358 (435)
.+........+++.+
T Consensus 228 ~~~~~~~~~~~~~~l 242 (293)
T PRK06080 228 IVLLALLGLASPWGL 242 (293)
T ss_pred HHHHHHHhhhhHHHH
Confidence 766655544455433
No 31
>PRK13595 ubiA prenyltransferase; Provisional
Probab=99.98 E-value=4.7e-30 Score=252.12 Aligned_cols=264 Identities=20% Similarity=0.203 Sum_probs=184.2
Q ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCCc
Q 013845 108 LLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLP 187 (435)
Q Consensus 108 ~~~~l~ay~~l~Rp~~~~~~~l~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~nkp~RP 187 (435)
....++.+++++||.+|+.++.++.+|...+... .+..+.. +++++......+.+.|++|||+|+|+|++|+|+||
T Consensus 8 ~~~~l~~ll~~sRP~~wi~t~~~~~~G~~~~g~~-~~~~~~~---~~l~~~~~~p~n~~~~giND~fD~eiDa~Npr~~~ 83 (292)
T PRK13595 8 ILLPLRRLLLISRPALWVNTVGTLVTGVWLTGHL-YTLDPGV---LPLLLYLTLPFNLLIYGLNDLADRETDAASPRKGG 83 (292)
T ss_pred hhhHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCc-ccchhHH---HHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCCC
Confidence 4566788999999999999999999999777432 2221132 45667788889999999999999999999999999
Q ss_pred ccccccCHHHHHHHHHHHHHH----HHHHHHHhchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHHHHHH
Q 013845 188 LASGDLSMGTGLAITLTLSLT----SLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVY 263 (435)
Q Consensus 188 l~sG~Is~~~A~~~~i~l~~l----gl~l~~~lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g~~~ 263 (435)
+++|++|+++++.+...+.++ ++.+++..|+....+.+ ++.+++++|| .||+|+|++|++++++. ...|.+.
T Consensus 84 i~~G~is~~~~~~~~~~~~~~~~~~~l~la~~l~~~~~~l~~-v~~~l~~~YS--~pPlRlK~rp~l~~l~~-~~~g~p~ 159 (292)
T PRK13595 84 WQGARLSPGEVRPLLRAVLLLNAPFLLYLALLLPPAATLLLL-LYAALFVGYS--LPPLRFKARPFLDGLSN-AAYALPL 159 (292)
T ss_pred CCcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHc--cCccchhcCcchhHHHH-HHHHHHH
Confidence 999999999998865544433 55666777877666553 5778999999 49999999999998876 3344432
Q ss_pred HHHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHHHHHHH
Q 013845 264 QFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGV 343 (435)
Q Consensus 264 ~~G~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~ay~~ 343 (435)
..|. .+.|... .+.. .....+|+.+++++++++|+|+||+.|+||+|+++|+|++.+++..++.++-+.
T Consensus 160 ~~~~------~~~g~~~---~~~~--l~a~~~w~~g~dii~ai~DiegDr~~Gi~Slpv~lG~r~a~~~a~~~~~~a~~~ 228 (292)
T PRK13595 160 ALPA------LALGAPV---PWPP--LLALMAWSVGKHAFDAAQDIPADRAAGTRTVATTLGVRGTALYALAWFLLAGAL 228 (292)
T ss_pred HHHH------HHcCCcc---hHHH--HHHHHHHHHHHHHHHhccChHhHHHcCCeechHHhCcHhHHHHHHHHHHHHHHH
Confidence 2221 1223221 1222 234457789999999999999999999999999999999999887766554333
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhccCCChhhhHHHHHHHHHHHHHH
Q 013845 344 SVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKASVID 400 (435)
Q Consensus 344 ~ll~g~~~~~~~~~l~~~~g~~vl~~~l~~~~~~~d~~~~~~~~~f~~~iw~l~~~~ 400 (435)
.... -.+... . ..+....+..+-+ .|.+..++-+.+..++|--+...
T Consensus 229 ~~~~--~~~~~~---~----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g 275 (292)
T PRK13595 229 LWPV--SRLTAL---A----LWLICGGMALALW-RRPTPETAHRLYPLSIVTPWIVG 275 (292)
T ss_pred HHHh--cchHHH---H----HHHHHHHHHHHHh-cCCCHHHHhccchHHHHHhHHHH
Confidence 2211 111111 1 1111122222222 46655566777777888665444
No 32
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.97 E-value=1.4e-29 Score=253.83 Aligned_cols=239 Identities=13% Similarity=0.096 Sum_probs=183.2
Q ss_pred HHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC----CCCc
Q 013845 112 LHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK----PDLP 187 (435)
Q Consensus 112 l~ay~~l~Rp~~~~~~~l~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~nk----p~RP 187 (435)
++.|++++||++...+.+++++|.++|.....++++.. .++++++++++++++|.+|||+|.+.|+.++ +.|+
T Consensus 3 ~~~~~~~~Rp~tl~~s~~pvllG~a~a~~~~~~~~~~~---~ll~ll~~~~~~~~~N~~NDy~D~~~g~D~~~~~~~~~~ 79 (317)
T PRK13387 3 AKLFLKLVEIHTKIASFFPVILGTLFSLYVAKIFDWLL---FLAFMVAMLAFDIATTAINNYMDFKKALDTADYVGIGNG 79 (317)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCccHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccccCCcch
Confidence 67899999999999999999999999964444566542 5677889999999999999999987655544 6899
Q ss_pred ccccccCHHHHHHHHHHHHHHHHH----HHHHhchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHHHHHH
Q 013845 188 LASGDLSMGTGLAITLTLSLTSLA----IALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVY 263 (435)
Q Consensus 188 l~sG~Is~~~A~~~~i~l~~lgl~----l~~~lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g~~~ 263 (435)
+++|.+++++++..++.+..++++ +.+..|+..+.+++ ++++.++.||. ||+++||++ +||+.++..+|+.+
T Consensus 80 i~~~~ls~~~v~~~~~~~~~ia~~~Gl~L~~~~g~~~l~igl-~g~~~~~~Yt~--gP~~l~y~g-LGe~~v~i~~G~~~ 155 (317)
T PRK13387 80 IGQHGLKPRNVLTVILLMYVVAAILGVYLCMNTSWLLLVIGL-ICFAIGILYTG--GPLPLSRMP-LGEIFSGLTMGFGI 155 (317)
T ss_pred hccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHH-HHHHHhhhhcC--CCcccccCc-cHHHHHHHHHHHHH
Confidence 999999999999988877776665 55566766666664 68889999995 899999999 59999888888877
Q ss_pred HHHHHHHHHHHhhCC--------Ccc--chH----HHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhH
Q 013845 264 QFSFFIHFQKYVLGR--------PVV--ITR----PLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENV 329 (435)
Q Consensus 264 ~~G~~~~~~~~~~g~--------~~~--~~~----~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a 329 (435)
..|.+.. ++...+. ... ++. .+++..+...+.+..+++.||+||+|+|+++|+||+|+++|+|++
T Consensus 156 v~g~~yv-~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~~~a 234 (317)
T PRK13387 156 FLLAVYI-NTNTITIESLLFQGEMFTIQGNLIAIIAIGVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIGREKG 234 (317)
T ss_pred HHHHHHH-hcCCCchHHHHhcccchhhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEcHHhH
Confidence 6665443 2110000 000 000 112245566667778899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 013845 330 LRLCVYALFFAYGVSVIVGASSSFQLVKL 358 (435)
Q Consensus 330 ~~l~~~l~~~ay~~~ll~g~~~~~~~~~l 358 (435)
.+++..++..+|+..+........+++.+
T Consensus 235 ~~l~~~l~~~a~l~~~~~v~~g~lp~~~l 263 (317)
T PRK13387 235 VVLFAILFYASYLAIAVIVLMGYISPWAL 263 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 99999999999987766555444454433
No 33
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=99.97 E-value=8.3e-30 Score=251.51 Aligned_cols=253 Identities=17% Similarity=0.141 Sum_probs=175.3
Q ss_pred HHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC--CCCcccc
Q 013845 113 HALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PDLPLAS 190 (435)
Q Consensus 113 ~ay~~l~Rp~~~~~~~l~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~nk--p~RPl~s 190 (435)
++|+|++||+++..+.++++.|.++|.... +.++. .+++++++.+++++++|++|||+|+|+|++|+ |+||+++
T Consensus 1 ~~~~~l~rp~~~~~~~~~~~~g~~la~~~~-~~~~~---~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~s 76 (280)
T TIGR01473 1 KDYLQLTKPRIISLLLITAFAGMWLAPGGA-LVNPP---LLLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVT 76 (280)
T ss_pred CchHHHccHHHHHHHHHHHHHHHHHhCCCC-CCCHH---HHHHHHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCC
Confidence 469999999999999999999999985432 23332 24667889999999999999999999999976 6999999
Q ss_pred cccCHHHHHHHHHHHHHHHHHH-HHHhchHHHHHHHHHHHH-HHhhccCCCCccccccCCCchhHHHHHHHHHHHHHHHH
Q 013845 191 GDLSMGTGLAITLTLSLTSLAI-ALSLQSPPLIFGLIVWFL-LGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFF 268 (435)
Q Consensus 191 G~Is~~~A~~~~i~l~~lgl~l-~~~lg~~~l~l~l~~~~~-l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g~~~~~G~~ 268 (435)
|++|+++|..+++++.++|+.+ ....|+....++++ +++ .+++||. .+||++.+ +..+++..|..++++.+
T Consensus 77 G~is~~~a~~~~~~~~~~g~~il~~~~~~~~~~l~~~-~~~~~~~~Yt~-----~lKr~~~~-~~~v~~~~g~~~~l~g~ 149 (280)
T TIGR01473 77 GRISPREALAFGLLLGVLGVAILAAFVNPLAALLGLF-GIFFYVIVYTI-----WLKRRTPQ-NTVIGGFAGAVPPLIGW 149 (280)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHhhcCh-----hhccCCch-hHHHHHHHHHHHHHHHH
Confidence 9999999999999999999884 44578776666543 443 4889994 28999986 44566666655443333
Q ss_pred HHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHH
Q 013845 269 IHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVG 348 (435)
Q Consensus 269 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~ay~~~ll~g 348 (435)
.. .++.. +...+++...+.+|+.......+++|+|+|+++|+||+|+++|+|++.+..............+.+
T Consensus 150 ~a-----~~g~~--~~~~~~l~~~~~~w~~~~~~~~a~~~~~dd~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~ 222 (280)
T TIGR01473 150 AA-----VTGSI--SLGAWLLFAIIFLWQPPHFWALALKYKDDYRAAGIPMLPVVKGERITKRQIALYTAALLPVSLLLA 222 (280)
T ss_pred HH-----hcCCC--CHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHCCCccCCcccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 12222 233444455666777776667778999999999999999999999887765544333322222223
Q ss_pred HhhhhhhHHHHHH-HHHHHHHHHHHHHHhhccCC-Chhhh
Q 013845 349 ASSSFQLVKLVSI-IGHSTLAFLLWLRAQTVDLS-NNAST 386 (435)
Q Consensus 349 ~~~~~~~~~l~~~-~g~~vl~~~l~~~~~~~d~~-~~~~~ 386 (435)
.....++ .|. .+..+.+.++.++.+..+.+ |++.+
T Consensus 223 ~~~~~~~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 259 (280)
T TIGR01473 223 FLGGTGW---LYLIVATLLGALFLYLAFKFYRDPTDRKKA 259 (280)
T ss_pred HHhcccH---HHHHHHHHHHHHHHHHHHHHhcCCCcHHHH
Confidence 2222232 333 23333344555565566655 44443
No 34
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=99.97 E-value=2.2e-29 Score=251.14 Aligned_cols=274 Identities=12% Similarity=0.127 Sum_probs=187.1
Q ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC--CC
Q 013845 108 LLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PD 185 (435)
Q Consensus 108 ~~~~l~ay~~l~Rp~~~~~~~l~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~nk--p~ 185 (435)
.+.++++|++++||+.+....++++.|.++|... +.++.. ++.++++..+.++++|++|||+|+|+|+.++ ++
T Consensus 9 ~~~~l~~~~~L~RP~~~~~~~~~~~~G~~la~~~--~~~~~~---~~~~~lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~ 83 (306)
T PRK13362 9 WEASLKDYIQVTKPGIIFGNVISVAGGFFLASKG--HVDPVL---MLAAVIGLSLVVASGCALNNCIDRDIDAKMQRTRN 83 (306)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccC--CCCHHH---HHHHHHHHHHHHHHHHHHhChHHhCcCCCCCCCCC
Confidence 4567899999999999999999999999998432 234321 4566789999999999999999999999764 59
Q ss_pred CcccccccCHHHHHHHHHHHHHHHHHHH-HHhchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHHHHHHH
Q 013845 186 LPLASGDLSMGTGLAITLTLSLTSLAIA-LSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQ 264 (435)
Q Consensus 186 RPl~sG~Is~~~A~~~~i~l~~lgl~l~-~~lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g~~~~ 264 (435)
||+++|++|+++|+.+++++.++|+.++ ...|+....++.+..+++.++||. ++||++.+++++.+...+.++.
T Consensus 84 RPlpsG~is~~~A~~~~~~l~~~g~~ll~~~~n~~~~~l~~~~~~~~~~~Yt~-----~lKr~t~~~~~vgg~~ga~p~l 158 (306)
T PRK13362 84 RVTVTGEISLGEALGFGLALGVAGFGLLAAFTNPLAALFAAFGYVVYVGVYSL-----YLKRNSVYGTLVGSLSGAMPPV 158 (306)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH-----HHhccCcHhHHHHHHHHHHHHH
Confidence 9999999999999999999999998865 445776655543334456789994 3899999888755544455555
Q ss_pred HHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHHHHHHHH
Q 013845 265 FSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVS 344 (435)
Q Consensus 265 ~G~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~ay~~~ 344 (435)
+|+.+. ++.. +...+++.+.+.+|+...+...+++|+|||+++|+||+|+++|++++.+..... .+..+..
T Consensus 159 ~G~~a~------~g~~--~~~~~~l~~~~~~W~~~h~~~~ai~~~~Dy~~aG~~~lpv~~G~~~t~~~~~~~-~~~~~~~ 229 (306)
T PRK13362 159 VGYCAV------TGQF--DAGALILLLMFSLWQMPHSYAIAIFRFNDYAAAGIPVLPVARGIAKTKLHIVLY-ILVFALV 229 (306)
T ss_pred HHHHHH------cCCC--cHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHCCCeeeceecChHHHHHHHHHH-HHHHHHH
Confidence 666542 2222 233455566777888888888899999999999999999999999887643332 2222221
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhc-c-C-CChhhhHHHHHHHHHHHHHHHHHH
Q 013845 345 VIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTV-D-L-SNNASTYSFYMFIWKASVIDLFNL 404 (435)
Q Consensus 345 ll~g~~~~~~~~~l~~~~g~~vl~~~l~~~~~~~-d-~-~~~~~~~~f~~~iw~l~~~~yl~l 404 (435)
.+..... +..++.+.+...++...+++...+. . . ++++ ....+|.|++.|+..+++
T Consensus 230 s~l~~~~--g~~g~~y~~~~~~~~~~~l~~a~~~~~~~~~~~~--~a~~~f~~S~~yl~~~~~ 288 (306)
T PRK13362 230 TALLPLA--GYTGIGYLAVAAATSLWWLAMALKGYRHAVDDTV--WARQLFGFSILTITALSV 288 (306)
T ss_pred HHHHHHH--ccccHHHHHHHHHHHHHHHHHHHHHHhccCCchH--HHHHHHHHHHHHHHHHHH
Confidence 1111111 1123344444444444444443332 1 1 2222 233456677666665544
No 35
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=99.97 E-value=2.5e-28 Score=242.60 Aligned_cols=271 Identities=15% Similarity=0.109 Sum_probs=175.8
Q ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccC-------
Q 013845 110 KKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVN------- 182 (435)
Q Consensus 110 ~~l~ay~~l~Rp~~~~~~~l~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~n------- 182 (435)
+++++|++++||++......++.+|.++|......+++.. ++++++++.++..++|++|||.|+|.|+.|
T Consensus 3 ~~~~~~~~l~Rp~~l~~~~~~~~~g~~lA~~~~g~~~~~~---~~l~~l~~~l~~~ag~~iND~~D~~~D~~~v~rtm~r 79 (297)
T PRK12871 3 ETLKAYIDLTRAHFLPAWPLLFCSGLVLAFANYGGFSWEL---TIKAALIGLFGFEAGFVLNDYVDRKRDRLDVENTLTR 79 (297)
T ss_pred chHHHHHHHHhHHHHHHHHHHHHHHHHHHHHccCCCCHHH---HHHHHHHHHHHHHHHHHHhhHHHHhcCcchHhhhhhc
Confidence 4688999999999988877877788888732111234421 232344555555778999999999999865
Q ss_pred --C--CCCcccccccCHHHHHHHHHHHHHHHHHHHHHhch----HHHHHHHHHHHHHHhhccCCCCccccccCCCc--hh
Q 013845 183 --K--PDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQS----PPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFL--AG 252 (435)
Q Consensus 183 --k--p~RPl~sG~Is~~~A~~~~i~l~~lgl~l~~~lg~----~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~--g~ 252 (435)
| ++||+++|++|+++++.+.+++.++|+.++..++. ..+.++ +.+.++++.|+. .||...+ +.
T Consensus 80 ~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l~~~l~~~~~~~~~~l~-~~~~~~~~~Y~~------~kr~~~~p~~~ 152 (297)
T PRK12871 80 YWRPFKERPIPSGKLSSKNAFALFILLAAVTSALILTLPYPNSLYVFVIM-LYSYGIEAFYQV------KKRNQKYPVAQ 152 (297)
T ss_pred cccCCCCCccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhc------ccccccccHHH
Confidence 3 48999999999999999999999998888765543 222222 346677888884 2443222 22
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHH
Q 013845 253 MCMV-TVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLR 331 (435)
Q Consensus 253 l~i~-~~~g~~~~~G~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~ 331 (435)
+ ++ ...+.++..| ++. .|. .+...++..++..+|+.+++++||++|+|||++.|+||+|+++|++++.+
T Consensus 153 l-~G~~~~~~~~~~g-~~~-----~g~---~~~~~~ll~~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~~ 222 (297)
T PRK12871 153 L-LGRTDFTLFPAAG-YLC-----YGQ---PDMTALLYMVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMKGTMY 222 (297)
T ss_pred H-HHHHHHHHHHHHH-HHH-----hCC---CcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechHHHHH
Confidence 2 23 2223333334 221 232 22334455567778899999999999999999999999999999998886
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhccCCChhhhHHHHH--HHHHHHHHHHHHH
Q 013845 332 LCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYM--FIWKASVIDLFNL 404 (435)
Q Consensus 332 l~~~l~~~ay~~~ll~g~~~~~~~~~l~~~~g~~vl~~~l~~~~~~~d~~~~~~~~~f~~--~iw~l~~~~yl~l 404 (435)
+...+..+.....+ +.....++ ..+....++.+..+.++.+..+.+|+++|-+-|. +....+|..-+++
T Consensus 223 ~i~~~~~l~~l~~~--~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 293 (297)
T PRK12871 223 WVTGFTALHFLAAI--FFLRELGP--IALYGFLAGFVLLAGANLYLWKEKSQDAGMKILPLYHASLVIYAVSIIL 293 (297)
T ss_pred HHHHHHHHHHHHHH--HHHHHhhH--HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55544433332222 22222222 1122222445566778888888888888755443 3555566555544
No 36
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.97 E-value=1.1e-27 Score=238.38 Aligned_cols=235 Identities=17% Similarity=0.131 Sum_probs=182.9
Q ss_pred HHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccc--ccccCCCCC
Q 013845 109 LKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVE--IDKVNKPDL 186 (435)
Q Consensus 109 ~~~l~ay~~l~Rp~~~~~~~l~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e--~D~~nkp~R 186 (435)
+++++.|++.+||+++..+++++++|.++|.....++++.. .++++++++++++++|.+|||+|.+ .|+. ++.
T Consensus 9 ~~~~~~w~~a~RP~tl~asl~pv~lG~a~a~~~~~~f~~~~---~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~-~~~- 83 (304)
T PRK07419 9 PSRRKLWLAAIKPPMYSVAIMPILVGTAWALGETGVFRLDQ---FITFLLAAILILAWENLSNDVFDADTGIDKN-KFH- 83 (304)
T ss_pred ccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCccHHH---HHHHHHHHHHHHHHHHHHHHHHHHhccCCcc-ccc-
Confidence 46788899999999999999999999999965444677643 5678899999999999999999987 6774 222
Q ss_pred cccccccCHHHHHHHHHHHHHHHHHH----HHHhchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHHHHH
Q 013845 187 PLASGDLSMGTGLAITLTLSLTSLAI----ALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLV 262 (435)
Q Consensus 187 Pl~sG~Is~~~A~~~~i~l~~lgl~l----~~~lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g~~ 262 (435)
...++..++++....+.++..+++.+ .+..|++.+.++ +++++.+++||. ||+++|++++ |++.++..+|+.
T Consensus 84 ~~~~~~~~~~~v~~~~~~~~~~a~~~Gl~L~~~~g~~~l~ig-~~g~~~~~~YT~--gP~~l~y~gL-GE~~v~l~~G~l 159 (304)
T PRK07419 84 SVVNLTGNKSLVFWLANLFLLLGLLGILAIALQSDWTVLGLV-LLCCFLGYLYQG--PPFRLGYQGL-GEPLCFLAFGPL 159 (304)
T ss_pred CcccccCcHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHH-HHHHHHhheccC--CCcccCCCCc-hHHHHHHHHHHH
Confidence 23455557888888777666555543 444576555555 468889999995 9999999996 999999888988
Q ss_pred HHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHHHHHH
Q 013845 263 YQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYG 342 (435)
Q Consensus 263 ~~~G~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~ay~ 342 (435)
.+.|.+.+ + .+ .++...+...+..++.+.++.+.||+||+|+|+++|+||+|+++|+|++.+++..+...+|+
T Consensus 160 ~v~g~~yv-~----t~--~~~~~~~~~sl~~gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ay~ 232 (304)
T PRK07419 160 AVAAALYS-Q----TP--SWSLIPLAASIILGLATSLILFCSHFHQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYA 232 (304)
T ss_pred HHHHHHHH-h----cC--CCCHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHcCCcceeeeechHhHHHHHHHHHHHHHH
Confidence 77766543 2 22 23344556666777788889999999999999999999999999999999999999999998
Q ss_pred HHHHHHHhhhhhhHHHH
Q 013845 343 VSVIVGASSSFQLVKLV 359 (435)
Q Consensus 343 ~~ll~g~~~~~~~~~l~ 359 (435)
..+........+++.++
T Consensus 233 ~~i~~v~~g~~p~~~Ll 249 (304)
T PRK07419 233 LELLPVLLGFWPWTTLL 249 (304)
T ss_pred HHHHHHHHhhhHHHHHH
Confidence 87666555445655443
No 37
>PLN02922 prenyltransferase
Probab=99.96 E-value=2.4e-27 Score=237.10 Aligned_cols=237 Identities=18% Similarity=0.205 Sum_probs=179.0
Q ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccc--ccccCCCCCc
Q 013845 110 KKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVE--IDKVNKPDLP 187 (435)
Q Consensus 110 ~~l~ay~~l~Rp~~~~~~~l~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e--~D~~nkp~RP 187 (435)
++++.|++.+||+++..+++++++|.++|......+++.. .++++++++++++++|.+|||+|.+ .|+.++..+.
T Consensus 13 ~~~~~w~~a~Rp~tl~~s~~pv~lG~a~A~~~~g~f~~~~---~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~~~~~ 89 (315)
T PLN02922 13 SRATLWWRAIKLPMYSVALVPLTVGAAAAYLQTGLFDARR---YGTLLLSSVLVITWLNLSNDAYDADTGVDKNKKESVV 89 (315)
T ss_pred cHHHHHHHHhCcchHHHHHHHHHHHHHHHHHcCCCccHHH---HHHHHHHHHHHHHHHHHHhhhhHhccCcCcccCCCCC
Confidence 5678899999999999999999999999965434677643 5678899999999999999999986 5775432222
Q ss_pred ccccccCHHHHHHHHHHHHHHHHHHHH---H--hchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHHHHH
Q 013845 188 LASGDLSMGTGLAITLTLSLTSLAIAL---S--LQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLV 262 (435)
Q Consensus 188 l~sG~Is~~~A~~~~i~l~~lgl~l~~---~--lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g~~ 262 (435)
-..| ++++.+..++.+.++++...+ . .|++.+.++ +++++.+++||. ||+++|++++ |++.++..+|..
T Consensus 90 ~~~~--s~~~v~~~~~~~~~la~~g~~ll~~~~~~~~~l~iG-~~g~~~~~~Yt~--gP~pl~y~gL-GE~~v~i~fG~l 163 (315)
T PLN02922 90 NLVG--SRRGVLAAAIGCLALGAAGLVWASLVAGNIRVILLL-AAAILCGYVYQC--PPFRLSYKGL-GEPLCFAAFGPL 163 (315)
T ss_pred Cccc--CHHHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHH-HHHHHHHHHHhc--CCcccccCcc-hHHHHHHHHHHH
Confidence 2234 899998877766666543221 1 244445454 468899999995 9999999997 999998888887
Q ss_pred HHHHHHHHHHHHhhCC-Cc---cchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHH
Q 013845 263 YQFSFFIHFQKYVLGR-PV---VITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALF 338 (435)
Q Consensus 263 ~~~G~~~~~~~~~~g~-~~---~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~ 338 (435)
.+.|.|.. ++...+. .. .++...++..+...+++.++++.||+||+|+|++.|+||+|+++|+|++.++...++.
T Consensus 164 ~v~g~y~~-~~~~~~~~~~~~~~~~~~~~l~slp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~ 242 (315)
T PLN02922 164 ATTAFYLA-LASGAGGSEMAILPLTPTVLSASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRVVRWAVL 242 (315)
T ss_pred HHHHHHHH-hcccccccccccccccHHHHHHHHHHHHHHHHHHHHccCcchhhHHHcCccceeeEEChHHHHHHHHHHHH
Confidence 77776553 2211111 00 1234455677788888999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHhhhhhhH
Q 013845 339 FAYGVSVIVGASSSFQLV 356 (435)
Q Consensus 339 ~ay~~~ll~g~~~~~~~~ 356 (435)
.+|+..+........+++
T Consensus 243 ~~y~~~i~~v~~~~~p~~ 260 (315)
T PLN02922 243 LLYSLLAALGLLKALPLP 260 (315)
T ss_pred HHHHHHHHHHHHhhhhHH
Confidence 999877666555444543
No 38
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=99.96 E-value=9.4e-28 Score=237.05 Aligned_cols=224 Identities=15% Similarity=0.089 Sum_probs=174.5
Q ss_pred ccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccc--ccccC--CCCCcccccccCH
Q 013845 120 RPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVE--IDKVN--KPDLPLASGDLSM 195 (435)
Q Consensus 120 Rp~~~~~~~l~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e--~D~~n--kp~RPl~sG~Is~ 195 (435)
||+++..++.++++|.++|.... .+++.. .++++++++++++++|.+|||+|.+ .|+.+ +|.|++++|.+++
T Consensus 1 Rp~tl~~s~~pv~lG~ala~~~~-~f~~~~---~ll~~~~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~ 76 (284)
T TIGR00751 1 RPKTLPLAIAPIVAGTALAAWLH-AFVWLV---ALLALATAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITP 76 (284)
T ss_pred CCchHHHHHHHHHHHHHHHHHcC-CccHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCH
Confidence 89999999999999999996543 677643 5678899999999999999999985 46533 4789999999999
Q ss_pred HHHHHHHHHHHHHHHHH----HHHhch-----HHH-HHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHHHHHHHH
Q 013845 196 GTGLAITLTLSLTSLAI----ALSLQS-----PPL-IFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQF 265 (435)
Q Consensus 196 ~~A~~~~i~l~~lgl~l----~~~lg~-----~~l-~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g~~~~~ 265 (435)
++++..++++..+++++ .+..++ +.+ .++ +++++.++.||. ||+++|++++ ||+.++..+|...+.
T Consensus 77 ~~v~~~~~~~~~~a~~~Gi~l~~~~~~~~~~~~~~l~lg-~~~~~~~~~Yt~--gP~~l~y~gL-GE~~v~i~~G~l~v~ 152 (284)
T TIGR00751 77 REVKTALITSVALGALSGLVLALLAAPNLSDLFWFIALG-ALCIAAAITYTV--GSKPYGYAGL-GDISVLVFFGPLAVL 152 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHH-HHHHHHhHhhcC--CCCccccCch-HHHHHHHHHHHHHHH
Confidence 99998887777655444 334453 133 344 468888999995 8999999997 999999999987777
Q ss_pred HHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHH
Q 013845 266 SFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSV 345 (435)
Q Consensus 266 G~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~ay~~~l 345 (435)
|.+.. + .+. ++...++..+..++++.++++.||+||+|+|+++|+||+|+++|+|+++++...++..+|++.+
T Consensus 153 g~~yv-q----~~~--~~~~~ll~sl~~g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~~~ 225 (284)
T TIGR00751 153 GTQYL-Q----AHR--VDWVGILPAVATGLLACAVLNINNLRDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTF 225 (284)
T ss_pred HHHHH-h----cCC--CCHHHHHHHHHHHHHHHHHHHHcCcccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHHHH
Confidence 76543 2 222 2333445556667778889999999999999999999999999999999999999889988766
Q ss_pred HHHHhhhhhhHHH
Q 013845 346 IVGASSSFQLVKL 358 (435)
Q Consensus 346 l~g~~~~~~~~~l 358 (435)
+.......+++.+
T Consensus 226 ~~~~~~~~p~~~l 238 (284)
T TIGR00751 226 VFMLATPISWWCV 238 (284)
T ss_pred HHHHHhhchHHHH
Confidence 5554444455433
No 39
>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]
Probab=99.96 E-value=1.5e-29 Score=240.03 Aligned_cols=277 Identities=16% Similarity=0.103 Sum_probs=202.2
Q ss_pred hHHHHHHHHHHHhhhccchHHHHHHHH---HHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccc
Q 013845 105 WDVLLKKLHALYVFTRPFAMIGTIVGI---TSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKV 181 (435)
Q Consensus 105 ~~~~~~~l~ay~~l~Rp~~~~~~~l~~---~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~ 181 (435)
.+.-+.+++.|.|++|.++++++.+.. .+..++|... ...+.+ .-+.++-+|+++|++++|.+||..|+|+|++
T Consensus 57 ~~~~p~r~~pYaqLmRldkPiGTwLLywPCtWSIamaAda--g~~p~~-~mL~LFG~GAllMRgAGCtINDlwDkdlD~K 133 (353)
T KOG1381|consen 57 VASSPKRWKPYAQLMRLDKPIGTWLLYWPCTWSIAMAADA--GLLPSI-KMLALFGVGALLMRGAGCTINDLWDKDLDAK 133 (353)
T ss_pred hhcCCccchhHHHHHhcCCCceeeeeecchHHHHHhccCC--Cccchh-HHHHHhcccHHHhccCCceehhhhhhhhhhh
Confidence 333445699999999999999997754 4555555422 122221 1134566799999999999999999999997
Q ss_pred CC--CCCcccccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHH
Q 013845 182 NK--PDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVF 259 (435)
Q Consensus 182 nk--p~RPl~sG~Is~~~A~~~~i~l~~lgl~l~~~lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~ 259 (435)
.+ +.||++||++|+++|+.+..+.+.+|+.+...+|+....++. .++.+.+.|+. +||++++++++.+..+
T Consensus 134 VeRtklRPlAsG~ls~~qaI~fL~~ql~~gLgiLlqLn~ysi~lg~-~sl~~v~~ypl------~kr~TY~pq~vLgltf 206 (353)
T KOG1381|consen 134 VERTKLRPLASGSLSPRQAIGFLGAQLSLGLGILLQLNWYSIALGA-SSLALVITYPL------MKRFTYWPQLVLGLTF 206 (353)
T ss_pred HhhhcccccccCCcchhHHHHHHHHHHHHhHHHHHhccHHHHHhcc-cccccEEEeeh------hhhcchhHHHHHhhhc
Confidence 65 489999999999999999999999999999999998887764 58888999996 8999999998776554
Q ss_pred HHHHHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHHH
Q 013845 260 GLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFF 339 (435)
Q Consensus 260 g~~~~~G~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~ 339 (435)
.....+|+-+ + ++.. .+...+-+++--.+|++.+++++++||.++|.+.|+|+.+.++|++...|++..- ..
T Consensus 207 nwGAllGw~A-----~-~g~~-~~s~~~plYls~v~Wtl~YDTIYAHQDK~dDvk~gvkSTALrfG~nTK~wl~gf~-a~ 278 (353)
T KOG1381|consen 207 NWGALLGWCA-----L-KGSL-SPSAVLPLYLSGVCWTLIYDTIYAHQDKRDDVKIGVKSTALRFGDNTKPWLSGFG-AA 278 (353)
T ss_pred chhhhhcchh-----h-cCcc-ChhhhhHHHHhhhhhhhhhhhhhhcccchhhhHhcchhhhhhcCCCCchHHhhhh-HH
Confidence 4433344322 2 2221 2222333455556789999999999999999999999999999998877765432 22
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhccCCChhhhHHHH-HHHHHHHHHHHH
Q 013845 340 AYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFY-MFIWKASVIDLF 402 (435)
Q Consensus 340 ay~~~ll~g~~~~~~~~~l~~~~g~~vl~~~l~~~~~~~d~~~~~~~~~f~-~~iw~l~~~~yl 402 (435)
.......+|+.+...| .+..+..+.+..+..|..++|+||+++|.++| .+.|-.++..+.
T Consensus 279 ~ia~La~aG~~s~q~~---pyy~~lg~~~~~L~~~i~~vdiDnp~dC~k~f~sN~ntGli~~~~ 339 (353)
T KOG1381|consen 279 QIASLAAAGIASDQTW---PYYAALGAVAARLGSQIYKVDIDNPSDCWKKFKSNSNTGLILFSG 339 (353)
T ss_pred HHHHHHHhhhccCCCc---hHHHHHHHHHHHHHhheeeeecCChHHHHHHHHhcCcchHHHHHH
Confidence 2223344566555544 33444556678899999999999999976554 566666554443
No 40
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=99.96 E-value=2.4e-26 Score=224.93 Aligned_cols=236 Identities=17% Similarity=0.179 Sum_probs=182.1
Q ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccc--cccc----CC
Q 013845 110 KKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVE--IDKV----NK 183 (435)
Q Consensus 110 ~~l~ay~~l~Rp~~~~~~~l~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e--~D~~----nk 183 (435)
++.+.|++++|||+++.++.+++.|.++|......+++. ..++++++++++++..|..|||.|.+ .|.. .+
T Consensus 6 ~~~~~wl~~~rP~Tl~aai~Pv~~G~a~A~~~~~~f~~~---~~ll~Li~~~~iq~~vN~~NdY~D~~KG~D~~g~~~~~ 82 (303)
T COG1575 6 SKTQLWLELARPKTLPAAIAPVIVGTALAFWYGKSFNLL---VALLALIAAILLQILVNLANDYFDYKKGTDTHGPDRLK 82 (303)
T ss_pred HHHHHHHHhcCccchHHHHHHHHHHHHHHHHHccchHHH---HHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccc
Confidence 456889999999999999999999999997654445553 36788999999999999999999985 5642 33
Q ss_pred CCCcccccccCHHHHHHHHHHHHHHHHHHH----HHhchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHH
Q 013845 184 PDLPLASGDLSMGTGLAITLTLSLTSLAIA----LSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVF 259 (435)
Q Consensus 184 p~RPl~sG~Is~~~A~~~~i~l~~lgl~l~----~~lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~ 259 (435)
.++-+...+++++..+.+.+.+...+.+++ ...+++.+.++ +++++.++.||. +|+++++.|+ |++.++.++
T Consensus 83 ~~g~I~~~~~k~~~~l~l~l~~~~g~~llg~~~~~~s~~~~l~lG-~l~~~~g~~YTg--Gp~PlgY~gL-GEi~~~vff 158 (303)
T COG1575 83 QSGLIVRQSMKPALILSLALFLLAGLALLGVILAALSDWLVLLLG-LLCIAAGILYTG--GPFPLGYMGL-GEIFVGVFF 158 (303)
T ss_pred ccceeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHheeeecc--CCcCcccCCH-HHHHHHHHH
Confidence 356666777888888777766665544443 34455534444 569999999995 8999999987 999999888
Q ss_pred HHHHHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHHH
Q 013845 260 GLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFF 339 (435)
Q Consensus 260 g~~~~~G~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~ 339 (435)
|...+.|.+.. |+ ..++...+...++..+.+.+++..||+||+|+|+++|++|+||++|+++++.+...++..
T Consensus 159 G~l~v~g~~yi-qt------~~~~~~~ll~slp~gil~~~Il~aNNirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~ 231 (303)
T COG1575 159 GPLIVLGAYYI-QT------GRLSWAILLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVV 231 (303)
T ss_pred HHHHHHHHHHH-hc------ccchHHHHHHHHHHHHHHHHHHHhcccccchhHHhcCCcceeeeeccHhHHHHHHHHHHH
Confidence 98776665542 21 123344566677777778889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhHHHH
Q 013845 340 AYGVSVIVGASSSFQLVKLV 359 (435)
Q Consensus 340 ay~~~ll~g~~~~~~~~~l~ 359 (435)
+|++.++.......+++.++
T Consensus 232 a~l~~~~~~i~~~~~~~~ll 251 (303)
T COG1575 232 AYLAIVIFVILGLFPVWGLL 251 (303)
T ss_pred HHHHHHHHHHHHhchHHHHH
Confidence 99887765555555554433
No 41
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=99.96 E-value=3.1e-26 Score=226.37 Aligned_cols=229 Identities=15% Similarity=0.144 Sum_probs=173.6
Q ss_pred HHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccc--ccccCCCCCcccccc
Q 013845 115 LYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVE--IDKVNKPDLPLASGD 192 (435)
Q Consensus 115 y~~l~Rp~~~~~~~l~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e--~D~~nkp~RPl~sG~ 192 (435)
|++.+||+++..+++++++|.++|......+++.. .+++++++++.|+++|.+|||+|.+ .|+.+. . ...++.
T Consensus 2 w~~a~Rp~tl~~s~~pv~lG~alA~~~~~~f~~~~---~ll~li~~l~~q~~~N~~Ndy~D~~~G~D~~~~-~-~~~~~~ 76 (285)
T TIGR02235 2 WLAAIKPPLYSVAVMPILVGTAVAWGQGGVFHLDR---FALFLIAAILILAWINLTNDVFDSDTGIDRFKL-H-SIVNLT 76 (285)
T ss_pred hHHHhhhhHHHHHHHHHHHHHHHHHHcCCCcCHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccc-C-Cccccc
Confidence 67899999999999999999999965444577643 5678899999999999999999986 477432 1 122233
Q ss_pred cCHHHHHHHHHHHHHHHHH----HHHHhchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHHHHHHHHHHH
Q 013845 193 LSMGTGLAITLTLSLTSLA----IALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFF 268 (435)
Q Consensus 193 Is~~~A~~~~i~l~~lgl~----l~~~lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g~~~~~G~~ 268 (435)
.++++......++..+++. +.+..|++.+.++ +++++.++.||. ||+++|++++ |++.++..+|...+.|.+
T Consensus 77 ~~~~~v~~~~~~~~~ia~~~g~~L~~~~~~~~l~lg-~~g~~~~~~Yt~--gP~~l~y~gL-GE~~v~l~~G~l~v~g~~ 152 (285)
T TIGR02235 77 GSRSLVFWLANFFLLIGLVGIAALSWRWQITVLALV-GLCCFLGYLYQG--PPFRLGYQGL-GEPICWLCFGPLAIAAAL 152 (285)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHhhcC--CCcccCCCCc-cHHHHHHHHHHHHHHHHH
Confidence 4567777666665555444 4444564444454 468899999995 9999999997 999999999987776655
Q ss_pred HHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHH
Q 013845 269 IHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVG 348 (435)
Q Consensus 269 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~ay~~~ll~g 348 (435)
.. + .+ .++...++..+..++.+.++.+.||+||+|+|+++|+||+|+++|+|++.++...++..+|+..+...
T Consensus 153 yv-q----t~--~~~~~~~l~sl~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v 225 (285)
T TIGR02235 153 YA-Q----SQ--SFSLIPWKASILVGLATTLILFCSHFHQVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVVLLIAV 225 (285)
T ss_pred HH-h----CC--cCcHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCcceeheecHHhHHHHHHHHHHHHHHHHHHHH
Confidence 43 2 22 23444556677777888899999999999999999999999999999999999999999998776665
Q ss_pred HhhhhhhHHHH
Q 013845 349 ASSSFQLVKLV 359 (435)
Q Consensus 349 ~~~~~~~~~l~ 359 (435)
.....+|+.++
T Consensus 226 ~~~~~p~~~ll 236 (285)
T TIGR02235 226 IGGFLPWTTLL 236 (285)
T ss_pred HHhhhHHHHHH
Confidence 55445555443
No 42
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=99.95 E-value=1.7e-26 Score=227.41 Aligned_cols=217 Identities=21% Similarity=0.188 Sum_probs=153.4
Q ss_pred HHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCCccccc
Q 013845 112 LHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASG 191 (435)
Q Consensus 112 l~ay~~l~Rp~~~~~~~l~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~nkp~RPl~sG 191 (435)
+|.+++++||++|+.+.+++..|+++|. +.+ ++.+ ++.++.-....+.+.|.+|||+|+|.|+.|++.+.. .|
T Consensus 1 ~~~~~~~~rP~~wi~~a~pf~~g~~la~-~~~--~~~~---l~~~l~~~~~~n~am~~~Ndy~D~~~d~dn~r~~g~-~g 73 (282)
T PRK13105 1 IRQLLLSSRPISWINTAYPFAAAYLLAG-GEI--DWLF---VVGTVFFLIPYNLAMYGINDVFDYESDLRNPRKGGV-EG 73 (282)
T ss_pred ChhHHHhcccHHHhccHHHHHHHHHHHC-CCC--ChHH---HHHHHHHHHHHHHHHHhhhhhhhhhcCCCCcccCCC-CC
Confidence 3678999999999999999999999993 222 2321 222222244445555677999999999999764333 58
Q ss_pred ccCHHHHHHHHHHHHH-----HHHHHHHHhchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHHHHHHHHH
Q 013845 192 DLSMGTGLAITLTLSL-----TSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFS 266 (435)
Q Consensus 192 ~Is~~~A~~~~i~l~~-----lgl~l~~~lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g~~~~~G 266 (435)
.+++++.........+ .++.+....+++.+.++ .++++.++.||. ||.|+|++++.++++.+..+.....+|
T Consensus 74 ~i~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~l~-~~ai~~~~~YS~--~p~rlk~~gl~d~~t~~~~f~~~~v~G 150 (282)
T PRK13105 74 AVLDRAMHRTTLWASVVTTVPFLVVLLAVGSWASGLVL-AVSVFAVVAYSA--PGLRFKERPFLDSLTSSTHFVSPALYG 150 (282)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHhcC--CCccccccchHHHHHHHHHHHHHHHHH
Confidence 8999988444333332 23333333355555444 468889999995 899999999987765444333223344
Q ss_pred HHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHH
Q 013845 267 FFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVI 346 (435)
Q Consensus 267 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~ay~~~ll 346 (435)
.+. + ++. .+...++....+.+|+.+++++||+||+|+||+.|+||+|+++|+|++.+++..++.+++++.+.
T Consensus 151 ~~~-----~-~~~--~~~~~~l~~~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~~~ 222 (282)
T PRK13105 151 LVL-----A-GAP--FTAALWAVLAAFFLWGMASHAFGAVQDVVADREAGIASIATVLGARRTVRLAVGLYAAAAVLMLA 222 (282)
T ss_pred HHH-----h-hcc--ccHHHHHHHHHHHHHHHHHHHHHhCcchHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHHHH
Confidence 332 1 322 23345566777788899999999999999999999999999999999999999988888776653
No 43
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=7.5e-27 Score=227.98 Aligned_cols=269 Identities=16% Similarity=0.205 Sum_probs=193.0
Q ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCC--C
Q 013845 108 LLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKP--D 185 (435)
Q Consensus 108 ~~~~l~ay~~l~Rp~~~~~~~l~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~nkp--~ 185 (435)
.+.++++|++++||+......++...|+++|.++ ..++. .+++++++..+..+++|++|+++|+|+|++++| +
T Consensus 14 ~~~~~k~yl~LtKPrvi~L~~it~~~g~~lA~~~--~~~~~---l~~~~~~g~~L~a~~a~a~N~~~DrDID~~M~RT~~ 88 (304)
T COG0109 14 SRSTIKDYLQLTKPRVISLLLITAFAGMLLAPRG--SINPL---LLLLTLLGGALGAGGAGAFNMYIDRDIDALMERTRK 88 (304)
T ss_pred hHHHHHHHHHHhCCeeeehHHHHHHHHHHHcccc--cccHH---HHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhccC
Confidence 5688999999999999999999999999999752 23443 257788999999999999999999999999875 9
Q ss_pred CcccccccCHHHHHHHHHHHHHHHHHHH-HHhchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHHHHHHH
Q 013845 186 LPLASGDLSMGTGLAITLTLSLTSLAIA-LSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQ 264 (435)
Q Consensus 186 RPl~sG~Is~~~A~~~~i~l~~lgl~l~-~~lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g~~~~ 264 (435)
||+++|++++++++.++.++.++|+.+. +..|+.+..++++..++.+++||.. +||++.+ |+++|+..|..++
T Consensus 89 RP~~~G~i~p~~al~fgl~L~~~g~~~l~~~vn~laa~l~~~gi~~Yv~vYT~~-----lKR~T~~-NiviGg~aGa~Pp 162 (304)
T COG0109 89 RPLVTGLISPREALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYVVVYTLW-----LKRRTPQ-NIVIGGFAGAMPP 162 (304)
T ss_pred CCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-----ccCCccc-ceeeeeccccccc
Confidence 9999999999999999999999999887 7789888777777788899999974 8999986 7888888876555
Q ss_pred -HHHHHHHHHHhhCCCccchHHHHHHHHHHH----HHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHHH
Q 013845 265 -FSFFIHFQKYVLGRPVVITRPLIFAAAIIS----TISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFF 339 (435)
Q Consensus 265 -~G~~~~~~~~~~g~~~~~~~~~~~~~~~~~----~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~ 339 (435)
+|+.++ .| ....+.+.++.++|+| +|++++..- +|+ +++|+.++|++-|++.+.+.......+
T Consensus 163 liGwaAv-----tg-~~~~~a~~Lf~IiF~WtPpHfwALAl~~~---~DY---~~AgiPMlPvv~G~~~t~~~I~~y~~~ 230 (304)
T COG0109 163 LIGWAAV-----TG-SISLGAILLFAIIFLWTPPHFWALALKYK---DDY---KAAGIPMLPVVKGERRTKRQILLYTLA 230 (304)
T ss_pred cceeeee-----eC-CCCchHHHHHHHHHHhccHHHHHHHHHHH---HHH---HHcCCCcccccccHHHHHHHHHHHHHH
Confidence 676542 23 3344445566666665 345543322 233 999999999999999887753332222
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhccC-CChhhhHHHHHHHHHHHHHHHHHH
Q 013845 340 AYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDL-SNNASTYSFYMFIWKASVIDLFNL 404 (435)
Q Consensus 340 ay~~~ll~g~~~~~~~~~l~~~~g~~vl~~~l~~~~~~~d~-~~~~~~~~f~~~iw~l~~~~yl~l 404 (435)
.....++... .+..++.|.+...+++..+++.+.+.-. +|++ +...+|..++.|+..++.
T Consensus 231 l~~~sl~~~~---~g~~g~~Y~v~a~~l~~~~l~~a~~~~~~~~~~--~A~klF~~S~~yL~~lf~ 291 (304)
T COG0109 231 LAPVSLLLAL---LGYVGYLYLVVATLLGAWFLALAWKLYRKDDRK--WARKLFKYSIIYLALLFV 291 (304)
T ss_pred HHHHHHHHHH---hccchhHHHHHHHHHHHHHHHHHHHHHhCccHH--HHHHHHHHHHHHHHHHHH
Confidence 2222222222 1223445666666666766666655522 2322 333455666666555533
No 44
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=99.95 E-value=1.1e-25 Score=222.46 Aligned_cols=229 Identities=21% Similarity=0.219 Sum_probs=160.6
Q ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCCccc
Q 013845 110 KKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLA 189 (435)
Q Consensus 110 ~~l~ay~~l~Rp~~~~~~~l~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~nkp~RPl~ 189 (435)
+.+++++++.|+.+...+..++..+..... ..+..+ ....+++.++.+.++|++||+.|+|+|++|+|+||.+
T Consensus 2 ~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~--~~~~~~-----~~~~~~~~~~~~~~~~~~N~~~D~~~D~~n~~~R~~~ 74 (285)
T PRK12872 2 KLLFAFLKLFRYGNLLIAALGQSLVYMASL--LLGLPI-----SWLLLLITFLIAAAVYIINYLTDLEEDIINKPERVVF 74 (285)
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHHHHHH--HHcChh-----HHHHHHHHHHHHHHHHHhhhhcCCchhhcCCCchHHH
Confidence 356889999999998877776655432110 011111 3456778899999999999999999999999999998
Q ss_pred ccccCHHHHHHHHHHHHHHHHHHH-HHhchHHHHHHHHHHHHHHhhccCCCCcc-ccccCCCchhHHHHHHHHHHHHHHH
Q 013845 190 SGDLSMGTGLAITLTLSLTSLAIA-LSLQSPPLIFGLIVWFLLGTAYSVDLPFL-RWKTKPFLAGMCMVTVFGLVYQFSF 267 (435)
Q Consensus 190 sG~Is~~~A~~~~i~l~~lgl~l~-~~lg~~~l~l~l~~~~~l~~~Ys~~~Ppl-rlKr~~~~g~l~i~~~~g~~~~~G~ 267 (435)
+++...+.+..+..+...+++.+. ...|++.+.+++ ++.++++.||. ||. ++||.|.++|++++..+|..+.++.
T Consensus 75 s~~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~Ys~--~~~~~lk~~p~~~~~~vg~~~g~~~~~~~ 151 (285)
T PRK12872 75 SETKAYGLFLLLNVLGLYLGAYLLAVIGGPKFALIFI-IPLILGILYSV--FFKRRLKRIPLFKNLVVSLLWALSPLILG 151 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH-HHHHHHHHHhC--hhHHHHhhhhhHhhHHHHHHHHHHHHHHH
Confidence 655444444444444444444442 334766666554 57778999995 554 6899999999999988887665433
Q ss_pred HHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHH
Q 013845 268 FIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIV 347 (435)
Q Consensus 268 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~ay~~~ll~ 347 (435)
+.. .+.. ++...+....+++++..+++.++|++|+|+|+++|+||+|+++|+|++.+++..+..++++..+..
T Consensus 152 ~~~-----~~~~--~~~~~~~~~~~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~~~t~~~~~~~~~~~~~~~~~~ 224 (285)
T PRK12872 152 VYY-----YQLT--IFSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKFLLILNLLFLILLILG 224 (285)
T ss_pred HHh-----cccc--cchHHHHHHHHHHHHHHHHHHHHhcccchhHHHcCCcccchhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 221 1211 222344444555566778899999999999999999999999999999999888887777766554
Q ss_pred HHhhhhhh
Q 013845 348 GASSSFQL 355 (435)
Q Consensus 348 g~~~~~~~ 355 (435)
......++
T Consensus 225 ~~~~~~~~ 232 (285)
T PRK12872 225 VYTGLLPL 232 (285)
T ss_pred HHHhHhhH
Confidence 44333344
No 45
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=99.95 E-value=5e-26 Score=219.64 Aligned_cols=188 Identities=29% Similarity=0.407 Sum_probs=145.8
Q ss_pred HHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccc--CCCCCcccccccCHHHHHHHHHH
Q 013845 127 TIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKV--NKPDLPLASGDLSMGTGLAITLT 204 (435)
Q Consensus 127 ~~l~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~--nkp~RPl~sG~Is~~~A~~~~i~ 204 (435)
+..+++.|...+... ..++. .+....++.++.+.++|.+||+.|+|+|+. |+|+||+++|+++++++..++.+
T Consensus 4 ~~~~~l~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~~~~ 78 (257)
T PF01040_consen 4 SFLPVLAGLALASGG--PFNWP---IFLLGLLAVFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIFALI 78 (257)
T ss_pred HHHHHHHHHHHHHcC--CCCHH---HHHHHHHHHHHHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHHHHHHHHHH
Confidence 445566664444332 23332 245566777799999999999999999999 88999999999999999999999
Q ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhCCCccchH
Q 013845 205 LSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITR 284 (435)
Q Consensus 205 l~~lgl~l~~~lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g~~~~~G~~~~~~~~~~g~~~~~~~ 284 (435)
+.++++++++..|+..+.+.+ +..+.+++|| ||+|+||++++++++++..++..+..|++. .++.. +.
T Consensus 79 ~~~l~l~l~~~~~~~~~~~~~-~~~~~~~~Ys---~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~--~~ 146 (257)
T PF01040_consen 79 LLLLGLLLALLLGPWFLLILL-LGFLLGLLYS---PPLRLKRRPLWGELVVALVFGLLILLGAYA------AGGDP--PP 146 (257)
T ss_pred HHHHHHHHHHhcCchhHHHHH-HHHHHHHHHh---hhhhhcceeccchhhHHHhhhHhhhhhhhh------cCCcc--cH
Confidence 999999998888877777664 4666779999 788999999999998888777666566543 12221 22
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHH
Q 013845 285 PLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLR 331 (435)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~ 331 (435)
+.+....+..++.......+|++|+|+|++.|+||+|+++|++++++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~D~~~D~~~g~~Tl~v~~G~~~~~~ 193 (257)
T PF01040_consen 147 PPFLLAIFFFLLIFAIMFFNDIRDIEGDRKAGRRTLPVLLGEKKARY 193 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCCcchHHHHHHHHHHH
Confidence 33444444456667777888999999999999999999999999987
No 46
>PLN02776 prenyltransferase
Probab=99.95 E-value=5.1e-25 Score=221.03 Aligned_cols=194 Identities=15% Similarity=0.065 Sum_probs=147.7
Q ss_pred hhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC--CCCcccccccCH
Q 013845 118 FTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PDLPLASGDLSM 195 (435)
Q Consensus 118 l~Rp~~~~~~~l~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~nk--p~RPl~sG~Is~ 195 (435)
++||+......++.+.|+++|.+..+ ++. .+++++++..++++++|++||++|+|+|++|+ ++||+|+|++|+
T Consensus 1 L~Kpri~~lv~~ta~~G~~lA~~~~~--~~~---~l~~~~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~ 75 (341)
T PLN02776 1 LSKARLSALVVATSGAGFVLGSGEAI--DLP---GLGWTCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISV 75 (341)
T ss_pred CCcchhHHHHHHHHHHHHHHhcCCCC--CHH---HHHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCH
Confidence 47899999999999999999854332 222 24667889999999999999999999999876 599999999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHHhchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHHHH-HHHHHHHHHHHH
Q 013845 196 GTGLAITLTLSLTSLAI-ALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGL-VYQFSFFIHFQK 273 (435)
Q Consensus 196 ~~A~~~~i~l~~lgl~l-~~~lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g~-~~~~G~~~~~~~ 273 (435)
++|+.+++++.++|+.+ ++.+|+.+..++++..+++...||. +||++.+ |..+|++.|. ++.+|+.++
T Consensus 76 ~~A~~~~~~l~~~g~~~l~~~~n~l~~~l~~~~~~ly~~vYt~------lKR~t~~-~~~lG~~~Ga~ppL~Gw~Av--- 145 (341)
T PLN02776 76 PHAVAWAVVVGAAGVALLAYKTNMLTAGLGAGNILLYAFVYTP------LKQIHPA-NTWVGAVVGAIPPLMGWAAA--- 145 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh------HccCCch-hHHHHHHHHHHHHHHHHHHH---
Confidence 99999999999999854 5668888877765434455778995 8999987 6778888884 455666442
Q ss_pred HhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecc--hhhHHH
Q 013845 274 YVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLG--KENVLR 331 (435)
Q Consensus 274 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG--~k~a~~ 331 (435)
.| ... ...+++.+.+.+|+........+.|.|||+++|++++|+.-+ ++.+..
T Consensus 146 --tg-~~~--~~~~~Lf~~~~~Wq~pHf~~la~~~~dDy~~ag~pmlpv~~~~g~~ta~~ 200 (341)
T PLN02776 146 --SG-QLD--AGAMVLAAALYFWQMPHFMALAYMCRDDYAAGGYRMLSLADATGRRTALV 200 (341)
T ss_pred --cC-CCC--HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCCcccCccccchHHHHHH
Confidence 23 222 234455566677777666666778888999999999999764 444433
No 47
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=99.93 E-value=1.8e-24 Score=213.30 Aligned_cols=218 Identities=23% Similarity=0.262 Sum_probs=139.3
Q ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCC-CChHHHHHHHHHHHHH--HHHHHHHhhhhhcccccccccCCC
Q 013845 108 LLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFAD-LTPKYFMEFLKALLSA--VLMNNYVGTVNQVADVEIDKVNKP 184 (435)
Q Consensus 108 ~~~~l~ay~~l~Rp~~~~~~~l~~~~G~~lA~~~~~~-~~~~~l~~lll~ll~~--~l~~~a~~~iNd~~D~e~D~~nkp 184 (435)
...+++.++++.||+++..++.++++|.++|....++ +++.. +++++. +..+.+.|++||++|+|+||.|++
T Consensus 4 ~~~~~~~l~~l~RP~~~~~~~~p~l~G~~lA~~~~~~~~~~~~-----~~ll~~~~i~~Nl~~y~iND~~D~D~Dr~~pr 78 (282)
T PRK12875 4 LGDRLRYLLVLSRPRFWLYLAGPVVVGVAYAADSVADLFSPAA-----VALFAYFLFPANVFLYGVNDVFDADTDELNPK 78 (282)
T ss_pred hHHHHHHHHHHhCccchHHHHHHHHHHHHHHhccCcccccHHH-----HHHHHHHHHHHHHHHhcchhhhhhhccccCCC
Confidence 3467888999999999999999999999999654322 33321 112221 334556677999999999999876
Q ss_pred CC---ccc-ccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHHH
Q 013845 185 DL---PLA-SGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFG 260 (435)
Q Consensus 185 ~R---Pl~-sG~Is~~~A~~~~i~l~~lgl~l~~~lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g 260 (435)
.+ |++ +|+.... ...++...+++.+....++....+ ++..+++++.||. ||+|+|++++.+ +.+.+.+.
T Consensus 79 k~~~r~~~~s~~~~~~---~~~~l~~~l~l~l~~~~~~~~~~~-ll~~i~~~~~YS~--pP~rlk~~p~~~-~~~~g~~~ 151 (282)
T PRK12875 79 KDREREVRYRGDRRVL---VAVALSGALALAFLLVLPPAAWPA-LLAFLVLSVEYSA--PPLRFKTTPVLD-SLSNGLYI 151 (282)
T ss_pred ccCCCCccHHHHHHHH---HHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHHcC--CCccchhccHHH-HHHHHHHH
Confidence 54 333 2211111 112223334444444444433332 2457789999994 999999999854 33322222
Q ss_pred HHHHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHHHH
Q 013845 261 LVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFA 340 (435)
Q Consensus 261 ~~~~~G~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~a 340 (435)
.+...+++.. .+. .+...+ .+...+|+.+++++||+||+|+|+++|+||+|+++|++++.+++.....++
T Consensus 152 ~~~~~~y~~~------tg~--~~~~~l--~~a~~l~~~~~~~in~i~Die~D~~aGi~Tlav~lG~~~a~~~~~~~~~~a 221 (282)
T PRK12875 152 LPGVAAYALV------SGS--LPPLLA--VAGGWLWAMGMHTFSAIPDIEPDRAAGIRTTATVLGERRTYAYCAACWLLA 221 (282)
T ss_pred HHHHHHHHHH------cCC--CcHHHH--HHHHHHHHHHHHHHHhccCHHHHHHcCCccchhhccHhhHHHHHHHHHHHH
Confidence 2222333321 222 232232 223457888999999999999999999999999999999988777766655
Q ss_pred HHHHHHH
Q 013845 341 YGVSVIV 347 (435)
Q Consensus 341 y~~~ll~ 347 (435)
..+....
T Consensus 222 ~~~~~~~ 228 (282)
T PRK12875 222 AAAFAAV 228 (282)
T ss_pred HHHHHHH
Confidence 5444443
No 48
>PRK13591 ubiA prenyltransferase; Provisional
Probab=99.92 E-value=2.2e-23 Score=205.90 Aligned_cols=178 Identities=19% Similarity=0.145 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHhhhhhcccccccccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhcc
Q 013845 157 LLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYS 236 (435)
Q Consensus 157 ll~~~l~~~a~~~iNd~~D~e~D~~nkp~RPl~sG~Is~~~A~~~~i~l~~lgl~l~~~lg~~~l~l~l~~~~~l~~~Ys 236 (435)
.+.+.+...++|++||++|+|+|++|+|+||.+ +++.+..+.++..++|+.+++..|++. ++ +++.+.+++||
T Consensus 64 ~~~~~L~~~s~~~iNd~~D~eiD~IN~P~r~~~----s~~~a~~ls~la~llGl~La~~~g~~l--l~-ll~~l~g~lYS 136 (307)
T PRK13591 64 CIAGGLIIYSVYTLDRALDSEEDAVNRSELIGS----NKKIGLLVSLLAFLLGTYILAMDGMLL--LA-FLPFITGYLYS 136 (307)
T ss_pred HHHHHHHHHHHHHHhhhccchhhhccCcccccc----CHHHHHHHHHHHHHHHHHHHHHHhHHH--HH-HHHHHHHHHhc
Confidence 345677889999999999999999999999987 788999999999999999999888643 33 35777899999
Q ss_pred CCC--Cc--cccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhh
Q 013845 237 VDL--PF--LRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGD 312 (435)
Q Consensus 237 ~~~--Pp--lrlKr~~~~g~l~i~~~~g~~~~~G~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD 312 (435)
.++ +| +|+|+++.+||+.++..+|.....+. +. .... +. .......+.....++++.+||++|+|||
T Consensus 137 ~Glk~~P~plklK~~~glGnl~V~i~~G~~i~g~~----g~--~~~~--~~-~~~~i~l~~~~~l~~~~iindirDiEGD 207 (307)
T PRK13591 137 KGIKIGKFALKLKGGLGVKNIVVGITWGGFIAGIA----GS--YCGS--LI-PVGLIFLFFGVKLFINSCVYDFKDVKGD 207 (307)
T ss_pred CCCCCCCccccccCCCchhHHHHHHHHHHHHHHHH----Hh--hhhh--HH-HHHHHHHHHHHHHHHHHHHHHhhhhHhH
Confidence 632 24 48899999999999988886432211 00 0110 00 0111111111113466789999999999
Q ss_pred HhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHHh
Q 013845 313 KQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGAS 350 (435)
Q Consensus 313 ~~~Gi~Tlpv~lG~k~a~~l~~~l~~~ay~~~ll~g~~ 350 (435)
++.|+||+|+++|++++.++...+..++|++.++....
T Consensus 208 r~~G~kTLPV~lG~~~A~~l~~~l~~~~~l~li~~~~~ 245 (307)
T PRK13591 208 TLAGIKTLPVSLGEQKTRNLLLGIHLFSHLVLGIALIF 245 (307)
T ss_pred HHcCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988888888776554443
No 49
>PRK13592 ubiA prenyltransferase; Provisional
Probab=99.92 E-value=5.2e-23 Score=201.74 Aligned_cols=177 Identities=14% Similarity=0.167 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcccccccccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Q 013845 152 EFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLL 231 (435)
Q Consensus 152 ~lll~ll~~~l~~~a~~~iNd~~D~e~D~~nkp~RPl~sG~Is~~~A~~~~i~l~~lgl~l~~~lg~~~l~l~l~~~~~l 231 (435)
+.+++.+..++..+++|++|||+|+|+||+|+|+||+|||++|+++|+.+++++.++++.+.... ...+ ...+.
T Consensus 47 ~~~l~~~~vf~~~~~gniiNDy~D~EIDrIN~P~RPLPsG~VS~~~A~~~si~L~~~~l~L~~l~-----~i~i-~~~~i 120 (299)
T PRK13592 47 QEFVGVFTVFGFWMILRIADDFKDYETDRRLFPHRALPSGRVKKKDLAIALSFIVAVSVLLNVLF-----MNNV-GWFLF 120 (299)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhhHHHhhhcCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH-----HHHH-HHHHH
Confidence 45667777889999999999999999999999999999999999999999998877777765544 1111 23334
Q ss_pred Hhhc-----cCCCCccccccCCCchhHHHHHHHHHHHHHH--HHHH-HHHHhhCCCccchHHHHHHHHHHHHHHHHHHHH
Q 013845 232 GTAY-----SVDLPFLRWKTKPFLAGMCMVTVFGLVYQFS--FFIH-FQKYVLGRPVVITRPLIFAAAIISTISAVMSLL 303 (435)
Q Consensus 232 ~~~Y-----s~~~PplrlKr~~~~g~l~i~~~~g~~~~~G--~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i 303 (435)
.+.| +. ++|+.++.||+.++...|.++..| ++.. .+....|.+. .....+++.+...+.++++|+.
T Consensus 121 ~~lY~~lm~a~-----~~K~~~l~gNl~Va~ltg~~f~~g~~~~~~~fg~~~~g~~~-~~~~~~~l~l~afl~~l~rEI~ 194 (299)
T PRK13592 121 LYIYGTLMSFW-----FFKRDKIQNSLPLALVTHNPVMMILNLYTISFVCYKYNLPL-LSLPTVLLAFTMYFPSLIWEVC 194 (299)
T ss_pred HHHHHHHHHHH-----HHcccCCCcchhhhhhccchhhhchhhhhhhhhhhhcccch-hhHHHHHHHHHHHHHHHHHHHH
Confidence 5556 64 589999999999988777655333 2221 0011122211 1111122233334457899999
Q ss_pred hccCCchhhHhcCCcccceecchhhHHHHHHHHHHHHHH
Q 013845 304 KDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYG 342 (435)
Q Consensus 304 ~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~ay~ 342 (435)
+|++| |||++ |.+|+|+++|.|++.++...+..+..+
T Consensus 195 KdieD-~gd~~-~~~Tlpi~~G~kkA~~ia~~l~ii~v~ 231 (299)
T PRK13592 195 RKIRA-PKDET-EYVTYSKLFGYKKATRFIEVVTLLDIL 231 (299)
T ss_pred HhhcC-Ccccc-CCeeechhccchhHHHHHHHHHHHHHH
Confidence 99999 88886 599999999999998887766555443
No 50
>PRK08238 hypothetical protein; Validated
Probab=99.87 E-value=1.8e-20 Score=197.20 Aligned_cols=191 Identities=25% Similarity=0.293 Sum_probs=143.6
Q ss_pred HHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccC--C
Q 013845 106 DVLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVN--K 183 (435)
Q Consensus 106 ~~~~~~l~ay~~l~Rp~~~~~~~l~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~n--k 183 (435)
++.+.++++|++++|||.+.+.++.++ +.+.+.. ..+ +..+..+++++++..++.+++|++||+.|+|+||+| |
T Consensus 185 ~~~~~~~~~~~~l~Rp~q~~kn~l~~~-p~l~a~~-~~~--~~~~~~~~~~f~~~~l~~sa~~~~ND~~D~e~Dr~~~rk 260 (479)
T PRK08238 185 PPRPARLRTWLKALRVHQWAKNLLVFV-PLLAAHQ-FGD--LQALLAALLAFLAFSLCASAVYILNDLLDLEADRAHPRK 260 (479)
T ss_pred CCCchHHHHHHHHhCCcHHHHHHHHHH-HHHHhcc-cCC--hHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccCCCC
Confidence 345568999999999999999988644 7766633 212 221223567788888999999999999999999998 5
Q ss_pred CCCcccccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHHHHHH
Q 013845 184 PDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVY 263 (435)
Q Consensus 184 p~RPl~sG~Is~~~A~~~~i~l~~lgl~l~~~lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g~~~ 263 (435)
|+||++||++|+++|+.++.+++++|+.+++.+|+..... ++..+++.++||. ++||+++++++++++.++..+
T Consensus 261 ~~RPlasG~is~~~A~~~~~~l~~~~~~l~~~l~~~~~~~-~~~~~~~~~~Ys~-----~lKr~~~~~~~~la~~~~lr~ 334 (479)
T PRK08238 261 RRRPFASGALPIPFGLAAAPLLLLAGLALALALGPAFLLV-LLAYLALTLAYSL-----RLKRKVLVDVLTLAALYTLRI 334 (479)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHhhH-----HhcCCccccchHHHHHHHHHH
Confidence 7999999999999999999999999999998888754443 3467788899996 589999999998887777666
Q ss_pred HHHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCC
Q 013845 264 QFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGF 317 (435)
Q Consensus 264 ~~G~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi 317 (435)
..|..+ .+ ...+ .|++ ++..++.....+.|...|.++++..|.
T Consensus 335 ~~G~~a------~~--~~~s--~wll-~~~~~~~l~la~~KR~~El~~~~~~~~ 377 (479)
T PRK08238 335 IAGAAA------IG--VALS--FWLL-AFSMFFFLSLALVKRYTELRRALQRGK 377 (479)
T ss_pred HHHHHH------hc--cCHH--HHHH-HHHHHHHHHHHHHHhHHHHHHHHhcCC
Confidence 666432 12 1122 2222 122233445577888889988888886
No 51
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=99.86 E-value=1.9e-19 Score=178.60 Aligned_cols=150 Identities=25% Similarity=0.336 Sum_probs=117.0
Q ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccC--CCC
Q 013845 108 LLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVN--KPD 185 (435)
Q Consensus 108 ~~~~l~ay~~l~Rp~~~~~~~l~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~n--kp~ 185 (435)
..+++++|++++||+.++...+.... .+++.... +.. .+...++++++..++++++|++||++|+|+||+| ||+
T Consensus 7 ~~~~l~~~l~L~RP~~w~~nll~~~~-~~~a~~~~-~~~--~~~~~llafl~~~l~~sa~y~iND~~D~e~Dr~~prk~~ 82 (295)
T PRK12324 7 PKNLLAGYLKLLRPKQWIKNLFVFAA-PIFAGNLL-NPG--ALLKVLLAFVLFCLASSAVYLVNDIRDVEADRLHPTKRN 82 (295)
T ss_pred hHHHHHHHHHHhCchHHHHHHHHHHH-HHHHHhhc-ccc--hHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCCCCC
Confidence 45678999999999999998875543 34443211 111 1123456677778889999999999999999996 689
Q ss_pred CcccccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHHHHHHHH
Q 013845 186 LPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQF 265 (435)
Q Consensus 186 RPl~sG~Is~~~A~~~~i~l~~lgl~l~~~lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g~~~~~ 265 (435)
||++||++++++|+.+++++.++|+.+++.+|+....+. +..+++.++||. ++||++.+++++++..++..+..
T Consensus 83 RPlasG~is~~~A~~~~~~l~~~~l~la~~l~~~~~~~~-~~~~~~~~~Ys~-----~lK~~~~~d~l~va~~~~lr~~~ 156 (295)
T PRK12324 83 RPIASGVVSVSLAYILAVVLLVASLALAYLLSPKLALVL-LVYLVLNLAYSF-----KLKHQPVLDVFCIASGFVLRAIA 156 (295)
T ss_pred CCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhH-----HhcCCchhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999888887666554 457788899996 58999999888887666655545
Q ss_pred HH
Q 013845 266 SF 267 (435)
Q Consensus 266 G~ 267 (435)
|.
T Consensus 157 G~ 158 (295)
T PRK12324 157 GG 158 (295)
T ss_pred HH
Confidence 54
No 52
>KOG1380 consensus Heme A farnesyltransferase [Coenzyme transport and metabolism]
Probab=99.54 E-value=5.3e-15 Score=144.35 Aligned_cols=194 Identities=12% Similarity=0.119 Sum_probs=137.1
Q ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCC--CCc
Q 013845 110 KKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKP--DLP 187 (435)
Q Consensus 110 ~~l~ay~~l~Rp~~~~~~~l~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~nkp--~RP 187 (435)
..++.|+||.+|+.....+++...|+++|..+ +++. .++.+.+|..+..+++|.+||+++.+.|..++| .||
T Consensus 92 k~~~~y~eLsK~rLT~LVV~tt~~gYalap~p---~s~~---~l~~~tvGT~L~S~sANaiNQ~~E~~~DsqM~RT~~Rp 165 (409)
T KOG1380|consen 92 KYARCYLELSKPRLTMLVVLTTMTGYALAPGP---FSFP---TLLYTTVGTGLCSASANAINQIFEPPFDSQMKRTQNRP 165 (409)
T ss_pred chHHHHHHhcccceEEEEeeeccccccccccC---CCcc---hhHHHhhhhHHHHhhhHhhhhhccCCchhhhHhhcccc
Confidence 45789999999998888888888999888654 3322 367788999999999999999999999998875 999
Q ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHHHHHHH-H
Q 013845 188 LASGDLSMGTGLAITLTLSLTSLAIALS-LQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQ-F 265 (435)
Q Consensus 188 l~sG~Is~~~A~~~~i~l~~lgl~l~~~-lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g~~~~-~ 265 (435)
+++|++++..|+.++.+....|+.+..+ +|+....++..=.++++++|+. +||..+ .|..+|.+.|.+++ +
T Consensus 166 lv~g~isp~hA~~fAt~~g~~G~slL~~gvNpl~a~Lga~Ni~LY~~vYTP------lKrihi-inTWvGavVGAIPPLM 238 (409)
T KOG1380|consen 166 LVRGRISPLHAVTFATLTGTAGVSLLAFGVNPLAAALGAGNIFLYAGVYTP------LKRIHI-INTWVGAVVGAIPPLM 238 (409)
T ss_pred cccCccChHHHHHHHHHhccccceeeeecccHHHHHHhhcchheeeccccc------hhhhhh-hhhHHHHHhccCCccc
Confidence 9999999999999999988888776544 7877766665445668888984 899887 47777777776555 6
Q ss_pred HHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceec
Q 013845 266 SFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKL 324 (435)
Q Consensus 266 G~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~l 324 (435)
|+.+. .|. ......++-.+++.|-+-.-..+-.+++ +|-.++|.+++++.-
T Consensus 239 GwAAa-----sg~-l~~ga~iLa~~LyaWQfPHFnaLS~~lR--~DYs~~GY~Mma~~n 289 (409)
T KOG1380|consen 239 GWAAA-----SGL-LDPGAMILAGILYAWQFPHFNALSWNLR--NDYSKAGYRMMAVTN 289 (409)
T ss_pred hhhhh-----ccC-CCccHHHHHHHHHHhcccchhhhhhhhc--hhhhhccEEEEEeec
Confidence 76432 122 1111122222233332211112222221 122899999999864
No 53
>KOG4581 consensus Predicted membrane protein [Function unknown]
Probab=99.45 E-value=1.9e-13 Score=127.88 Aligned_cols=230 Identities=17% Similarity=0.180 Sum_probs=159.8
Q ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccc--cccccCCCC
Q 013845 108 LLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADV--EIDKVNKPD 185 (435)
Q Consensus 108 ~~~~l~ay~~l~Rp~~~~~~~l~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~--e~D~~nkp~ 185 (435)
...+.+.|+-..||+....++.+..+|.++|.......++... ..+++.++.+..+.++|..|.|+|. .+|+...-+
T Consensus 57 ~~~k~~syllalrpws~sasl~p~~lgsalayrs~~~~d~~l~-~~fl~a~avlavh~agnlvntyfdf~kgid~kkadd 135 (359)
T KOG4581|consen 57 TFMKCASYLLALRPWSFSASLTPTALGSALAYRSHGAEDFRLA-TFFLCAFAVLAVHCAGNLVNTYFDFIKGIDHKKADD 135 (359)
T ss_pred HHHHHHHHHhhhcccccccccchHhhhhHHHHhhccccchhHH-HHHHHHhhheeeecccchhhhhhhhhhccccccccc
Confidence 4578899999999999999999999999999754222222222 2456777888899999999999997 488877779
Q ss_pred CcccccccCHHHHHHHHHHHHHHHHHH---HHHhchH---HHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHH
Q 013845 186 LPLASGDLSMGTGLAITLTLSLTSLAI---ALSLQSP---PLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVF 259 (435)
Q Consensus 186 RPl~sG~Is~~~A~~~~i~l~~lgl~l---~~~lg~~---~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~ 259 (435)
|.++..-+.+.+...++..+...|... ...+++. .+.+.-+.++.-.++|+.+ +.+|+..+ |++++.+.+
T Consensus 136 rtlvd~il~~~dvv~~g~~ly~~gc~~~~~l~~lsp~klehlaliyfggls~sflytgg---igfkyial-gdliili~f 211 (359)
T KOG4581|consen 136 RTLVDHILEKDDVVRFGAFLYMAGCGCAACLAVLSPAKLEHLALIYFGGLSGSFLYTGG---IGFKYIAL-GDLIILILF 211 (359)
T ss_pred hhHHHHhcChhheehhhHHHHHhcchHHHHHHhCCHhhhhhhhhhhccCcccceeEecc---cceEEEec-cCEEEEEee
Confidence 999999999999988888777665433 2233331 2222223455667889965 45787765 777676666
Q ss_pred HHHHH-HHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHH
Q 013845 260 GLVYQ-FSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALF 338 (435)
Q Consensus 260 g~~~~-~G~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~ 338 (435)
|++.. +++ + .|+ | ...+.+ +. -.+.+.+-+-++.+-|+.+|.|.||++|+-|+++.+|+..+-.++..++.
T Consensus 212 gpiavlfaf-~-~q~---g-~l~~~~-l~-yaiplalnteailhsnntrd~dndr~agivtlailig~t~s~ily~~llf 283 (359)
T KOG4581|consen 212 GPIAVLFAF-A-IQT---G-HLAIFP-LG-YAIPLALNTEAILHSNNTRDADNDREAGIVTLAILIGPTASHILYAMLLF 283 (359)
T ss_pred chHHHHHHH-H-Hhc---C-ceeEEe-eh-heeeeccchHHHhccCCCcccccccccCeEEEEEeecccHHHHHHHHHHH
Confidence 75433 332 2 121 2 222211 10 01122233557788899999999999999999999999888878888888
Q ss_pred HHHHHHHHHHHh
Q 013845 339 FAYGVSVIVGAS 350 (435)
Q Consensus 339 ~ay~~~ll~g~~ 350 (435)
..|.+..+.+.-
T Consensus 284 ~py~lf~i~~~~ 295 (359)
T KOG4581|consen 284 APYLLFFIFALH 295 (359)
T ss_pred HHHHHHHHHHHH
Confidence 888776655543
No 54
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=91.38 E-value=1.1 Score=45.07 Aligned_cols=50 Identities=18% Similarity=0.092 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHhhhhhcccccccccCCCCCcccccccCHHHHHHHHHHH
Q 013845 154 LKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTL 205 (435)
Q Consensus 154 ll~ll~~~l~~~a~~~iNd~~D~e~D~~nkp~RPl~sG~Is~~~A~~~~i~l 205 (435)
++..+......+..+..|++.|.|+|+.|+++-+.. ++..+.++.+...+
T Consensus 179 ll~slp~gil~~~Il~aNNirDie~D~~~gk~TLav--rLG~~~~~~l~~~l 228 (303)
T COG1575 179 LLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAV--RLGRKNARKLYAAL 228 (303)
T ss_pred HHHHHHHHHHHHHHHHhcccccchhHHhcCCcceee--eeccHhHHHHHHHH
Confidence 345566677778888999999999999998744332 45555555544333
No 55
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=89.31 E-value=3.8 Score=40.32 Aligned_cols=35 Identities=23% Similarity=0.285 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhhhhhcccccccccCC-CCCcccccc
Q 013845 158 LSAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASGD 192 (435)
Q Consensus 158 l~~~l~~~a~~~iNd~~D~e~D~~nk-p~RPl~sG~ 192 (435)
+..++.......+||.-|+|.|+.++ +.-|..-|+
T Consensus 168 ~~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~ 203 (285)
T PRK12872 168 VFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGK 203 (285)
T ss_pred HHHHHHHHHHHHHHhcccchhHHHcCCcccchhcch
Confidence 34445566667889999999999754 566665554
No 56
>PRK13591 ubiA prenyltransferase; Provisional
Probab=88.90 E-value=1.5 Score=44.29 Aligned_cols=66 Identities=26% Similarity=0.333 Sum_probs=37.9
Q ss_pred hhhhcccccccccCC-CCCcccccccCHHHHHHHHHHHHHHH---HHHHHHhc-----hHHHHHHHHHHHHHHhhccC
Q 013845 169 TVNQVADVEIDKVNK-PDLPLASGDLSMGTGLAITLTLSLTS---LAIALSLQ-----SPPLIFGLIVWFLLGTAYSV 237 (435)
Q Consensus 169 ~iNd~~D~e~D~~nk-p~RPl~sG~Is~~~A~~~~i~l~~lg---l~l~~~lg-----~~~l~l~l~~~~~l~~~Ys~ 237 (435)
.+||+.|.|.|+.+. +.-|+.=| ++.+..+...+.+++ .+++...| +...+..+..++++.+.|+.
T Consensus 197 iindirDiEGDr~~G~kTLPV~lG---~~~A~~l~~~l~~~~~l~li~~~~~g~l~~~~~~~~~s~~~~l~~~~~~~~ 271 (307)
T PRK13591 197 CVYDFKDVKGDTLAGIKTLPVSLG---EQKTRNLLLGIHLFSHLVLGIALIFGVIAFEPIILLYSFVCGLICIQVYSS 271 (307)
T ss_pred HHHHhhhhHhHHHcCCeeEEEEEC---HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHcC
Confidence 689999999999875 45666544 344443333222222 22222222 22344455667888889985
No 57
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=87.19 E-value=6.8 Score=39.07 Aligned_cols=58 Identities=17% Similarity=0.179 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHhhhhhcccccccccCC-CCCcccccccCHHHHHHHHHHHHHHHHHHHHHhc
Q 013845 157 LLSAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQ 217 (435)
Q Consensus 157 ll~~~l~~~a~~~iNd~~D~e~D~~nk-p~RPl~sG~Is~~~A~~~~i~l~~lgl~l~~~lg 217 (435)
.++..+...+...+||+-|.|.||.+. +.-|. ++.++.+..+...+.+++.++....+
T Consensus 166 ~~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv---~lG~~~a~~~~~~l~~~a~~~~~~~~ 224 (282)
T PRK13105 166 LAAFFLWGMASHAFGAVQDVVADREAGIASIAT---VLGARRTVRLAVGLYAAAAVLMLALP 224 (282)
T ss_pred HHHHHHHHHHHHHHHhCcchHhHHHcCCccchH---HhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445577888999999999999764 34443 56678888877777766665544444
No 58
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=86.60 E-value=6.1 Score=39.14 Aligned_cols=37 Identities=24% Similarity=0.161 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhhhhhcccccccccC-CCCCcccccc
Q 013845 156 ALLSAVLMNNYVGTVNQVADVEIDKVN-KPDLPLASGD 192 (435)
Q Consensus 156 ~ll~~~l~~~a~~~iNd~~D~e~D~~n-kp~RPl~sG~ 192 (435)
..++.++...+-..+|++.|+|.|+.. .|.-|+.-|+
T Consensus 165 l~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~ 202 (281)
T TIGR01474 165 LYLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGD 202 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhh
Confidence 345666677778889999999999975 4777777774
No 59
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=86.39 E-value=15 Score=36.52 Aligned_cols=57 Identities=16% Similarity=0.059 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhhhhhcccccccccCC-CCCcccccccCHHHHHHHHHHHHHHHHHHHHHhc
Q 013845 158 LSAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQ 217 (435)
Q Consensus 158 l~~~l~~~a~~~iNd~~D~e~D~~nk-p~RPl~sG~Is~~~A~~~~i~l~~lgl~l~~~lg 217 (435)
++..+...+...+||+-|+|.|+..+ +.-|. ++..+.+..+..++..++..+....+
T Consensus 172 ~a~~l~~~~~~~in~i~Die~D~~aGi~Tlav---~lG~~~a~~~~~~~~~~a~~~~~~~~ 229 (282)
T PRK12875 172 AGGWLWAMGMHTFSAIPDIEPDRAAGIRTTAT---VLGERRTYAYCAACWLLAAAAFAAVD 229 (282)
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHcCCccchh---hccHhhHHHHHHHHHHHHHHHHHHHH
Confidence 44456677778999999999999653 45444 45566676666666555544433333
No 60
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=86.29 E-value=6.6 Score=39.57 Aligned_cols=42 Identities=14% Similarity=0.061 Sum_probs=27.7
Q ss_pred HHHHHHHhhhhhcccccccccCCC-CCcccccccCHHHHHHHHHHH
Q 013845 161 VLMNNYVGTVNQVADVEIDKVNKP-DLPLASGDLSMGTGLAITLTL 205 (435)
Q Consensus 161 ~l~~~a~~~iNd~~D~e~D~~nkp-~RPl~sG~Is~~~A~~~~i~l 205 (435)
.+........||+-|+|.||.+.+ .-|. ++.++.+..+...+
T Consensus 184 gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~ly~~l 226 (304)
T PRK07419 184 GLATSLILFCSHFHQVEDDLAAGKRSPIV---RLGTKRGAQLLPWI 226 (304)
T ss_pred HHHHHHHHHHcCCcchhhHHHcCCcceee---eechHhHHHHHHHH
Confidence 355667778899999999998754 4443 44555555444333
No 61
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=85.20 E-value=3.7 Score=41.53 Aligned_cols=51 Identities=18% Similarity=0.180 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhhhhhcccccccccCCC-CCcccccccCHHHHHHHHHHHHHHH
Q 013845 156 ALLSAVLMNNYVGTVNQVADVEIDKVNKP-DLPLASGDLSMGTGLAITLTLSLTS 209 (435)
Q Consensus 156 ~ll~~~l~~~a~~~iNd~~D~e~D~~nkp-~RPl~sG~Is~~~A~~~~i~l~~lg 209 (435)
..+...+........||+-|+|.||.+.+ .-|. ++.++.+..+...+.+++
T Consensus 194 ~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v---~lG~~~a~~l~~~l~~~a 245 (317)
T PRK13387 194 ISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVY---YIGREKGVVLFAILFYAS 245 (317)
T ss_pred HHHHHHHHHHHHHHhcCCccchhHHHcCCeeeee---eEcHHhHHHHHHHHHHHH
Confidence 44556666777789999999999998754 4444 455666655544444433
No 62
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=84.04 E-value=6 Score=39.10 Aligned_cols=36 Identities=17% Similarity=0.154 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhhhhhcccccccccC-CCCCcccccc
Q 013845 157 LLSAVLMNNYVGTVNQVADVEIDKVN-KPDLPLASGD 192 (435)
Q Consensus 157 ll~~~l~~~a~~~iNd~~D~e~D~~n-kp~RPl~sG~ 192 (435)
.+..++.+..-..+||..|+|.|+.. .|.-|+.-|+
T Consensus 164 ~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~ 200 (282)
T TIGR01475 164 GIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGI 200 (282)
T ss_pred HHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhch
Confidence 34555666667789999999999864 4677776663
No 63
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=83.80 E-value=10 Score=37.57 Aligned_cols=37 Identities=11% Similarity=0.047 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhhhhhcccccccccCC-CCCcccccc
Q 013845 156 ALLSAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASGD 192 (435)
Q Consensus 156 ~ll~~~l~~~a~~~iNd~~D~e~D~~nk-p~RPl~sG~ 192 (435)
..+..++....-...|++.|+|.|+.+. |.-|+.-|+
T Consensus 170 l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~ 207 (285)
T PRK12847 170 LYIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGN 207 (285)
T ss_pred HHHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhcc
Confidence 3445566677777889999999999754 667766664
No 64
>PRK13592 ubiA prenyltransferase; Provisional
Probab=83.38 E-value=9.1 Score=38.46 Aligned_cols=41 Identities=12% Similarity=0.288 Sum_probs=27.3
Q ss_pred HHHHHHHHHhccCCchhhHhcCCcccceecch---hhHHHHHHHH
Q 013845 295 TISAVMSLLKDIPDEDGDKQFGFQSISSKLGK---ENVLRLCVYA 336 (435)
Q Consensus 295 ~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~---k~a~~l~~~l 336 (435)
+.+.+-.++||+.|+|-|+.. ++.=|+--|+ +.++.....+
T Consensus 57 ~~~~~gniiNDy~D~EIDrIN-~P~RPLPsG~VS~~~A~~~si~L 100 (299)
T PRK13592 57 GFWMILRIADDFKDYETDRRL-FPHRALPSGRVKKKDLAIALSFI 100 (299)
T ss_pred HHHHHhHHHHHHhhHHHhhhc-CCCCCCCcCCCCHHHHHHHHHHH
Confidence 335566889999999999654 6666776565 4454444333
No 65
>PLN02922 prenyltransferase
Probab=83.33 E-value=5.1 Score=40.57 Aligned_cols=47 Identities=9% Similarity=0.017 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhhhhhcccccccccCCC-CCcccccccCHHHHHHHHHHHH
Q 013845 157 LLSAVLMNNYVGTVNQVADVEIDKVNKP-DLPLASGDLSMGTGLAITLTLS 206 (435)
Q Consensus 157 ll~~~l~~~a~~~iNd~~D~e~D~~nkp-~RPl~sG~Is~~~A~~~~i~l~ 206 (435)
.+...+........||+-|+|.||.+++ .-|. ++.++.+..+...+.
T Consensus 194 slp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~l~~~l~ 241 (315)
T PLN02922 194 SVLVGLTTTLILFCSHFHQIDGDRAVGKMSPLV---RLGTEKGSRVVRWAV 241 (315)
T ss_pred HHHHHHHHHHHHHHccCcchhhHHHcCccceee---EEChHHHHHHHHHHH
Confidence 3344455667788999999999998764 4443 445566655444333
No 66
>PLN00012 chlorophyll synthetase; Provisional
Probab=82.75 E-value=12 Score=38.84 Aligned_cols=33 Identities=24% Similarity=0.256 Sum_probs=25.1
Q ss_pred HHHHHHHHhhhhhcccccccccC-CCCCcccccc
Q 013845 160 AVLMNNYVGTVNQVADVEIDKVN-KPDLPLASGD 192 (435)
Q Consensus 160 ~~l~~~a~~~iNd~~D~e~D~~n-kp~RPl~sG~ 192 (435)
..+...+....||+-|+|.|+.. ++.-|+.-|+
T Consensus 261 ~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~ 294 (375)
T PLN00012 261 YSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGV 294 (375)
T ss_pred HHHHHHHHHHHhhhcchhhHHHcCCcccceeech
Confidence 34566677889999999999965 5777776664
No 67
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=81.16 E-value=15 Score=36.68 Aligned_cols=48 Identities=13% Similarity=-0.004 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhhhhhcccccccccCCC-CCcccccccCHHHHHHHHHHHHHH
Q 013845 158 LSAVLMNNYVGTVNQVADVEIDKVNKP-DLPLASGDLSMGTGLAITLTLSLT 208 (435)
Q Consensus 158 l~~~l~~~a~~~iNd~~D~e~D~~nkp-~RPl~sG~Is~~~A~~~~i~l~~l 208 (435)
+...+...+....||+-|+|.|+.+.+ .-|. ++.++.+..+...+..+
T Consensus 168 l~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~l~~~l~~~ 216 (285)
T TIGR02235 168 ILVGLATTLILFCSHFHQVEDDLAHGKRSPVV---RLGTKLAAKIVPWVISL 216 (285)
T ss_pred HHHHHHHHHHHHhcCCccchhHHHcCCcceeh---eecHHhHHHHHHHHHHH
Confidence 344466777888999999999998753 4443 45566665554444433
No 68
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=79.94 E-value=12 Score=37.67 Aligned_cols=31 Identities=29% Similarity=0.314 Sum_probs=23.0
Q ss_pred HHHHHHhhhhhcccccccccC-CCCCcccccc
Q 013845 162 LMNNYVGTVNQVADVEIDKVN-KPDLPLASGD 192 (435)
Q Consensus 162 l~~~a~~~iNd~~D~e~D~~n-kp~RPl~sG~ 192 (435)
+...+....||+.|+|.||.. ++.-|+.-|+
T Consensus 200 l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~ 231 (314)
T PRK07566 200 LGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGE 231 (314)
T ss_pred HHHHHHHHHHHHHHhHhHHHcCCcccceeEcH
Confidence 345556789999999999975 4667775554
No 69
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=79.69 E-value=18 Score=35.84 Aligned_cols=49 Identities=22% Similarity=0.213 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhhhhhcccccccccCC-CCCcccccccCHHHHHHHHHHHHHH
Q 013845 157 LLSAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASGDLSMGTGLAITLTLSLT 208 (435)
Q Consensus 157 ll~~~l~~~a~~~iNd~~D~e~D~~nk-p~RPl~sG~Is~~~A~~~~i~l~~l 208 (435)
.+...+........||+-|+|.||.+. +.-|. ++..+.+..+...+..+
T Consensus 174 ~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v---~lG~~~a~~~~~~l~~~ 223 (293)
T PRK06080 174 ALPCGLLIGAVLLANNIRDIETDRENGKNTLAV---RLGDKNARRLHAALLAL 223 (293)
T ss_pred HHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEe---eECcHhHHHHHHHHHHH
Confidence 344455666777899999999999764 34444 34455555544444433
No 70
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=78.89 E-value=8.3 Score=37.90 Aligned_cols=34 Identities=26% Similarity=0.334 Sum_probs=24.4
Q ss_pred HHHHHHHHHhhhhhcccccccccCC-CCCcccccc
Q 013845 159 SAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASGD 192 (435)
Q Consensus 159 ~~~l~~~a~~~iNd~~D~e~D~~nk-p~RPl~sG~ 192 (435)
..++....-...||+.|+|.|+.+. +.-|..-|+
T Consensus 163 ~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~ 197 (279)
T PRK12884 163 MAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGE 197 (279)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcH
Confidence 3455556678899999999999754 566665554
No 71
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=78.06 E-value=6.7 Score=39.42 Aligned_cols=36 Identities=17% Similarity=0.286 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhhhhhcccccccccCC-CCCccccc
Q 013845 156 ALLSAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASG 191 (435)
Q Consensus 156 ~ll~~~l~~~a~~~iNd~~D~e~D~~nk-p~RPl~sG 191 (435)
..++.++...+-..+|+..|+|.|+... +.-|+.=|
T Consensus 182 l~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G 218 (300)
T PRK13106 182 FVIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG 218 (300)
T ss_pred HHHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh
Confidence 3456677777788999999999998654 66776555
No 72
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=77.98 E-value=30 Score=34.40 Aligned_cols=37 Identities=19% Similarity=0.130 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhhhhhcccccccccCC-CCCcccccc
Q 013845 156 ALLSAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASGD 192 (435)
Q Consensus 156 ~ll~~~l~~~a~~~iNd~~D~e~D~~nk-p~RPl~sG~ 192 (435)
..+...+...+-..+|++.|+|.|+... |.-|+.-|+
T Consensus 164 l~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~ 201 (284)
T PRK12888 164 LGLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGV 201 (284)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCc
Confidence 3445566677788999999999999754 666765554
No 73
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=76.34 E-value=11 Score=37.80 Aligned_cols=40 Identities=28% Similarity=0.308 Sum_probs=26.7
Q ss_pred HHHHHHHhhhhhcccccccccCC-CCCcccccccCHHHHHHHHH
Q 013845 161 VLMNNYVGTVNQVADVEIDKVNK-PDLPLASGDLSMGTGLAITL 203 (435)
Q Consensus 161 ~l~~~a~~~iNd~~D~e~D~~nk-p~RPl~sG~Is~~~A~~~~i 203 (435)
.+...+....||+.|+|.|+.+. +.-|..-| ++.+.....
T Consensus 193 ~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG---~~~a~~~~~ 233 (306)
T TIGR02056 193 SIAGLGIAIVNDFKSVEGDRALGLQSLPVAFG---IETAAWICV 233 (306)
T ss_pred HHHHHHHHHHHHccChHHHHHcCCcCcchhcC---hHHHHHHHH
Confidence 34566677899999999999754 55565444 455544433
No 74
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=76.27 E-value=30 Score=34.17 Aligned_cols=38 Identities=16% Similarity=0.076 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHhhhhhcccccccccCC-CCCcccccc
Q 013845 155 KALLSAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASGD 192 (435)
Q Consensus 155 l~ll~~~l~~~a~~~iNd~~D~e~D~~nk-p~RPl~sG~ 192 (435)
+..+..++-...-...|++.|+|.|+..+ |.-|+.-|.
T Consensus 166 ~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~ 204 (282)
T PRK12848 166 LLFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGR 204 (282)
T ss_pred HHHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhcc
Confidence 34455666677777889999999999754 677776665
No 75
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=75.61 E-value=8.2 Score=38.07 Aligned_cols=34 Identities=24% Similarity=0.220 Sum_probs=24.0
Q ss_pred HHHHHHHHHhhhhhcccccccccC-CCCCcccccc
Q 013845 159 SAVLMNNYVGTVNQVADVEIDKVN-KPDLPLASGD 192 (435)
Q Consensus 159 ~~~l~~~a~~~iNd~~D~e~D~~n-kp~RPl~sG~ 192 (435)
..++.+.+-..+||+.|+|.|+.+ .|.-|+.-|+
T Consensus 162 ~~f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~ 196 (279)
T PRK09573 162 CAFFSTWSREIVKDIEDIEGDLKENVITLPIKYGI 196 (279)
T ss_pred HHHHHHHHHHHHhhhhhhhhHHHCCCccccHHhhH
Confidence 344555566778999999999964 4677775553
No 76
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=75.55 E-value=26 Score=34.97 Aligned_cols=39 Identities=18% Similarity=0.052 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhhhhhcccccccccCC-CCCcccccccC
Q 013845 156 ALLSAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASGDLS 194 (435)
Q Consensus 156 ~ll~~~l~~~a~~~iNd~~D~e~D~~nk-p~RPl~sG~Is 194 (435)
..+..++...+-..+|++.|+|.|+... +.-|+.-|+-+
T Consensus 171 l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~ 210 (290)
T PRK12870 171 LWAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYA 210 (290)
T ss_pred HHHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhcccc
Confidence 3456677788888999999999999754 56666555443
No 77
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=75.17 E-value=27 Score=34.80 Aligned_cols=45 Identities=18% Similarity=0.118 Sum_probs=28.9
Q ss_pred HHHHHHHHhhhhhcccccccccCCC-CCcccccccCHHHHHHHHHHHHH
Q 013845 160 AVLMNNYVGTVNQVADVEIDKVNKP-DLPLASGDLSMGTGLAITLTLSL 207 (435)
Q Consensus 160 ~~l~~~a~~~iNd~~D~e~D~~nkp-~RPl~sG~Is~~~A~~~~i~l~~ 207 (435)
..+...+....||+-|+|.|+.+.+ .-|. ++.++.+..+...+..
T Consensus 173 ~g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v---~lG~~~a~~l~~~l~~ 218 (284)
T TIGR00751 173 TGLLACAVLNINNLRDIPTDARAGKNTLAV---RLGDARTRMYHQGLLA 218 (284)
T ss_pred HHHHHHHHHHHcCcccchhHHHcCCEeehh---hcchHhHHHHHHHHHH
Confidence 3445566777999999999998654 3333 4556666555444433
No 78
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=74.91 E-value=16 Score=36.79 Aligned_cols=42 Identities=14% Similarity=0.234 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhhhhhcccccccccCC-CCCcccccccCHHHHHHH
Q 013845 157 LLSAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASGDLSMGTGLAI 201 (435)
Q Consensus 157 ll~~~l~~~a~~~iNd~~D~e~D~~nk-p~RPl~sG~Is~~~A~~~ 201 (435)
.+...+...+...+||+.|+|.||.+. +.-|+. +.++.+..+
T Consensus 188 ~~~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~---lG~~~a~~l 230 (308)
T PRK12887 188 TLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLR---LGKQAVFKL 230 (308)
T ss_pred HHHHHHHHHHHHHHHhccchhhHHHcCCcchhHH---HhHHHHHHH
Confidence 345556667778899999999999764 444443 334444433
No 79
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=74.64 E-value=25 Score=35.23 Aligned_cols=36 Identities=14% Similarity=0.081 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhhhhhcccccccccC-CCCCcccccc
Q 013845 157 LLSAVLMNNYVGTVNQVADVEIDKVN-KPDLPLASGD 192 (435)
Q Consensus 157 ll~~~l~~~a~~~iNd~~D~e~D~~n-kp~RPl~sG~ 192 (435)
.+..++.+..-...||+.|+|.|+.+ .+.-|+.-|+
T Consensus 181 ~~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~ 217 (297)
T PRK12871 181 MVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGM 217 (297)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeech
Confidence 35566667778899999999999975 4677777665
No 80
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=74.49 E-value=33 Score=34.19 Aligned_cols=36 Identities=17% Similarity=0.223 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhhhhhcccccccccC-CCCCcccccc
Q 013845 157 LLSAVLMNNYVGTVNQVADVEIDKVN-KPDLPLASGD 192 (435)
Q Consensus 157 ll~~~l~~~a~~~iNd~~D~e~D~~n-kp~RPl~sG~ 192 (435)
.+..++.+.+-..+|++.|+|.|+.. .|.-|+.-|+
T Consensus 168 ~~~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~ 204 (291)
T PRK12886 168 GLAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGV 204 (291)
T ss_pred HHHHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCc
Confidence 34444555555678889999999864 4777877665
No 81
>PRK13595 ubiA prenyltransferase; Provisional
Probab=72.95 E-value=74 Score=31.97 Aligned_cols=24 Identities=17% Similarity=0.225 Sum_probs=18.0
Q ss_pred HHHHHHHHHhccCCchhhHhcCCc
Q 013845 295 TISAVMSLLKDIPDEDGDKQFGFQ 318 (435)
Q Consensus 295 ~~~~~~~~i~di~D~egD~~~Gi~ 318 (435)
-......-+||+-|+|.|++.-++
T Consensus 58 p~n~~~~giND~fD~eiDa~Npr~ 81 (292)
T PRK13595 58 PFNLLIYGLNDLADRETDAASPRK 81 (292)
T ss_pred HHHHHHHHHHhhhhhhhhccCCCC
Confidence 345566789999999999866443
No 82
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=72.80 E-value=14 Score=36.45 Aligned_cols=38 Identities=24% Similarity=0.226 Sum_probs=25.2
Q ss_pred HHHHHHhhhhhcccccccccCC-CCCcccccccCHHHHHHHH
Q 013845 162 LMNNYVGTVNQVADVEIDKVNK-PDLPLASGDLSMGTGLAIT 202 (435)
Q Consensus 162 l~~~a~~~iNd~~D~e~D~~nk-p~RPl~sG~Is~~~A~~~~ 202 (435)
+...+....||+.|+|.||.+. +.-|+.=|+ +.+..+.
T Consensus 172 l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~---~~a~~l~ 210 (283)
T TIGR01476 172 LGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGV---KRAAIVA 210 (283)
T ss_pred HHHHHHHHHHhccchhhHHHcCCcCcceEEcH---HHHHHHH
Confidence 3445567899999999999754 566665443 4444433
No 83
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=71.87 E-value=21 Score=33.95 Aligned_cols=32 Identities=19% Similarity=0.199 Sum_probs=23.1
Q ss_pred HHHHHHHHHhccCCchhhHhc-CCcccceecch
Q 013845 295 TISAVMSLLKDIPDEDGDKQF-GFQSISSKLGK 326 (435)
Q Consensus 295 ~~~~~~~~i~di~D~egD~~~-Gi~Tlpv~lG~ 326 (435)
+...+...+||+.|.|.|+.. +++.-|+.-|+
T Consensus 34 ~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~ 66 (257)
T PF01040_consen 34 LLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGR 66 (257)
T ss_pred HHHHHHHHhhChhhhhcCcccccccCcchhHHH
Confidence 445566788999999999996 34555665555
No 84
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=71.68 E-value=15 Score=37.53 Aligned_cols=34 Identities=24% Similarity=0.151 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhhhhhcccccccccCC-CCCccccc
Q 013845 158 LSAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASG 191 (435)
Q Consensus 158 l~~~l~~~a~~~iNd~~D~e~D~~nk-p~RPl~sG 191 (435)
+...+...+...+||+.|+|.|+... +.-|+.=|
T Consensus 187 ~~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G 221 (331)
T PRK12392 187 GLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIG 221 (331)
T ss_pred HHHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEc
Confidence 34556667777889999999999754 56666444
No 85
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=71.56 E-value=14 Score=36.39 Aligned_cols=32 Identities=28% Similarity=0.435 Sum_probs=22.8
Q ss_pred HHHHHHHhhhhhcccccccccC-CCCCcccccc
Q 013845 161 VLMNNYVGTVNQVADVEIDKVN-KPDLPLASGD 192 (435)
Q Consensus 161 ~l~~~a~~~iNd~~D~e~D~~n-kp~RPl~sG~ 192 (435)
++...+-...||+.|+|.|+.. .|.-|+.-|+
T Consensus 164 fl~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~ 196 (277)
T PRK12883 164 FLVNVAREIMKDIEDIEGDKAKGAKTLPIIIGK 196 (277)
T ss_pred HHHHHHHHHHhhhhhhccHHHcCCcCcChHhcH
Confidence 3344456677999999999975 4677776554
No 86
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=71.12 E-value=15 Score=36.07 Aligned_cols=34 Identities=26% Similarity=0.317 Sum_probs=24.3
Q ss_pred HHHHHHHHHhhhhhcccccccccCC-CCCcccccc
Q 013845 159 SAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASGD 192 (435)
Q Consensus 159 ~~~l~~~a~~~iNd~~D~e~D~~nk-p~RPl~sG~ 192 (435)
..++...+-..+||+.|.|.|+.++ |.-|+.-|+
T Consensus 165 ~~fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~ 199 (276)
T PRK12882 165 LAALATLAREIIKDVEDIEGDRAEGARTLPILIGV 199 (276)
T ss_pred HHHHHHHHHHHHhhhhhhhhHHHcCCccccHHhhH
Confidence 3344556678899999999999765 566665554
No 87
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=70.74 E-value=39 Score=33.74 Aligned_cols=36 Identities=19% Similarity=0.276 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhhhhhcccccccccC-CCCCcccccc
Q 013845 157 LLSAVLMNNYVGTVNQVADVEIDKVN-KPDLPLASGD 192 (435)
Q Consensus 157 ll~~~l~~~a~~~iNd~~D~e~D~~n-kp~RPl~sG~ 192 (435)
.+...+.+.+-..+|++.|+|.|+.. .|.-|+.-|+
T Consensus 173 ~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~ 209 (291)
T PRK12874 173 ALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGE 209 (291)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhh
Confidence 34556777777889999999999864 4777776665
No 88
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=69.52 E-value=25 Score=35.33 Aligned_cols=30 Identities=23% Similarity=0.288 Sum_probs=20.8
Q ss_pred HHHHHHHhccCCchhhHhc-CCcccceecch
Q 013845 297 SAVMSLLKDIPDEDGDKQF-GFQSISSKLGK 326 (435)
Q Consensus 297 ~~~~~~i~di~D~egD~~~-Gi~Tlpv~lG~ 326 (435)
+.+...+||+-|+|.|++. .++.=|..=|+
T Consensus 59 ~sa~y~iND~~D~e~Dr~~prk~~RPlasG~ 89 (295)
T PRK12324 59 SSAVYLVNDIRDVEADRLHPTKRNRPIASGV 89 (295)
T ss_pred HHHHHHHHhHHHHHhhccCCCCCCCCCCCCc
Confidence 4455789999999999985 33344554454
No 89
>PRK11383 hypothetical protein; Provisional
Probab=69.43 E-value=60 Score=29.08 Aligned_cols=80 Identities=11% Similarity=0.222 Sum_probs=39.3
Q ss_pred HHHHHHhhccCCCCccccc--cCCCchhHHHHHHHHH-HHHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHH
Q 013845 227 VWFLLGTAYSVDLPFLRWK--TKPFLAGMCMVTVFGL-VYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLL 303 (435)
Q Consensus 227 ~~~~l~~~Ys~~~PplrlK--r~~~~g~l~i~~~~g~-~~~~G~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i 303 (435)
.+++..+.|-. -.|-| ..+. .+..++.++.. +..++.+.++ +.+.+...+.......+++.....++.+-
T Consensus 50 lglF~avs~QK---~vRD~~egi~v-t~~f~~~cw~a~l~~i~LL~iG---LwNA~l~lsEKGfY~~af~lsLFgai~vQ 122 (145)
T PRK11383 50 LGLFSAASYQK---TVRDKYEGIPT-TSIYYMTCLTVFIISVALLMVG---LWNATLLLSEKGFYGLAFFLSLFGAVAVQ 122 (145)
T ss_pred HHHHHHHHHHH---HHhhcccCCCh-hHHHHHHHHHHHHHHHHHHHHH---HhcCCcchhhhhHHHHHHHHHHHHHHHHH
Confidence 35555555542 12333 3343 35556665543 2334444432 23444333333444444443334456788
Q ss_pred hccCCchhhH
Q 013845 304 KDIPDEDGDK 313 (435)
Q Consensus 304 ~di~D~egD~ 313 (435)
|++||...++
T Consensus 123 Kn~RD~~~~~ 132 (145)
T PRK11383 123 KNIRDAGINP 132 (145)
T ss_pred hhhhhhhhcc
Confidence 9999995543
No 90
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=66.16 E-value=66 Score=32.13 Aligned_cols=36 Identities=22% Similarity=0.297 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhhhhhcccccccccCC-CCCccccc
Q 013845 156 ALLSAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASG 191 (435)
Q Consensus 156 ~ll~~~l~~~a~~~iNd~~D~e~D~~nk-p~RPl~sG 191 (435)
..++.++-..+-..+.++.|+|.|+... +.-|+-=|
T Consensus 164 l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG 200 (286)
T PRK12895 164 IFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYG 200 (286)
T ss_pred HHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHC
Confidence 3456666777778999999999999765 45555444
No 91
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=64.87 E-value=1.3e+02 Score=29.63 Aligned_cols=72 Identities=24% Similarity=0.245 Sum_probs=39.9
Q ss_pred HHHHHHHHHhhhccch----HHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccc-cC
Q 013845 108 LLKKLHALYVFTRPFA----MIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDK-VN 182 (435)
Q Consensus 108 ~~~~l~ay~~l~Rp~~----~~~~~l~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~-~n 182 (435)
....++.++++.||.. .....+....+. -.......... .++.++.+...........+.=.|+.-+| .+
T Consensus 9 ~~~~~~~l~r~~r~i~~l~~~~~~~~~~~~~~-~~~~~~~~~~l----~~l~~~~~~~ag~~iND~~D~eiD~~n~rt~~ 83 (289)
T COG0382 9 KLKALLKLLRLDRPIFNLLLLLPALLGLLLAA-SGLPSLKLLLL----AFLAFFLARSAGYVINDLADREIDRINPRTKN 83 (289)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-cCCchHHHHHH----HHHHHHHHHHHhHHHHHHhhhhccCCCCCccC
Confidence 4567788899999975 233333333332 11110011111 13344555666667777788889997666 57
Q ss_pred CC
Q 013845 183 KP 184 (435)
Q Consensus 183 kp 184 (435)
+|
T Consensus 84 RP 85 (289)
T COG0382 84 RP 85 (289)
T ss_pred CC
Confidence 75
No 92
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=64.15 E-value=81 Score=31.40 Aligned_cols=30 Identities=17% Similarity=0.193 Sum_probs=20.6
Q ss_pred HHHHHHHhccCCchhhHhcCC-cccceecch
Q 013845 297 SAVMSLLKDIPDEDGDKQFGF-QSISSKLGK 326 (435)
Q Consensus 297 ~~~~~~i~di~D~egD~~~Gi-~Tlpv~lG~ 326 (435)
..+-..+||+-|+|-|++..+ +.=|+.-|+
T Consensus 57 ~aa~~~iNd~~D~~iD~~~~Rt~~Rpl~sG~ 87 (296)
T PRK04375 57 AGAAGALNNYIDRDIDAKMERTKNRPLVTGR 87 (296)
T ss_pred HHHHHHHHhHHhhccCCCCCccCCCCCCCCC
Confidence 445578999999999998543 344554454
No 93
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=62.28 E-value=99 Score=31.21 Aligned_cols=36 Identities=17% Similarity=0.040 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhhhhhcccccccccC-CCCCcccccc
Q 013845 157 LLSAVLMNNYVGTVNQVADVEIDKVN-KPDLPLASGD 192 (435)
Q Consensus 157 ll~~~l~~~a~~~iNd~~D~e~D~~n-kp~RPl~sG~ 192 (435)
.+..++....-..++++.|+|.|+.. .|.-|+.-|+
T Consensus 198 ~~~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~ 234 (314)
T PRK12878 198 YAGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGD 234 (314)
T ss_pred HHHHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhch
Confidence 34455566666677899999999964 4777776665
No 94
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=62.09 E-value=80 Score=31.47 Aligned_cols=36 Identities=19% Similarity=0.115 Sum_probs=24.8
Q ss_pred HHHHHHHhhhhhcccccccccCCC-CCcccccccCHHHHH
Q 013845 161 VLMNNYVGTVNQVADVEIDKVNKP-DLPLASGDLSMGTGL 199 (435)
Q Consensus 161 ~l~~~a~~~iNd~~D~e~D~~nkp-~RPl~sG~Is~~~A~ 199 (435)
.+........|++-|+|.||.+.+ .-|. ++.++.+.
T Consensus 181 ~l~~~~il~~n~~~D~e~D~~~G~~Tlav---~lG~~~a~ 217 (296)
T PRK05951 181 GLLMALVLLSNNLRDIEDDERKGIPTLAV---IFGRRGAA 217 (296)
T ss_pred HHHHHHHHHHCCCccchhHHHCCCeeeee---eEcHhhHH
Confidence 344566778999999999997653 3333 55566663
No 95
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=61.32 E-value=42 Score=33.51 Aligned_cols=30 Identities=20% Similarity=0.164 Sum_probs=23.4
Q ss_pred HHHHHHHhccCCchhhHhcCC-cccceecch
Q 013845 297 SAVMSLLKDIPDEDGDKQFGF-QSISSKLGK 326 (435)
Q Consensus 297 ~~~~~~i~di~D~egD~~~Gi-~Tlpv~lG~ 326 (435)
..+-..+||+.|+|-|++..+ +.-|+.-|+
T Consensus 58 ~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~ 88 (289)
T PLN02809 58 RGAGCTINDLLDRDIDKKVERTKLRPIASGA 88 (289)
T ss_pred HHHHHHHHhhHHhccccCCCCCCCCCCCCCC
Confidence 344578999999999998765 567877776
No 96
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=60.59 E-value=72 Score=32.04 Aligned_cols=35 Identities=26% Similarity=0.176 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhhhhhcccccccccCC-CCCcccccc
Q 013845 158 LSAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASGD 192 (435)
Q Consensus 158 l~~~l~~~a~~~iNd~~D~e~D~~nk-p~RPl~sG~ 192 (435)
++.++-+..-..+-...|+|.|+... |.-|..-|+
T Consensus 177 ~~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~ 212 (294)
T PRK12873 177 LATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGS 212 (294)
T ss_pred HHHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcCh
Confidence 44555555555666777999999765 777877775
No 97
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=60.40 E-value=1.3e+02 Score=29.76 Aligned_cols=30 Identities=17% Similarity=0.091 Sum_probs=21.1
Q ss_pred HHHHHHHhccCCchhhHhcCC-cccceecch
Q 013845 297 SAVMSLLKDIPDEDGDKQFGF-QSISSKLGK 326 (435)
Q Consensus 297 ~~~~~~i~di~D~egD~~~Gi-~Tlpv~lG~ 326 (435)
..+-..+||+-|.|-|++..+ +.=|+.-|+
T Consensus 49 ~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~ 79 (279)
T PRK12869 49 SGGSAAFNHGIERDIDKVMSRTSKRPTPVGL 79 (279)
T ss_pred HHHHHHHhchHhcCCCCCCCCCCCCCcCCCC
Confidence 455688999999999998654 334444444
No 98
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=57.69 E-value=60 Score=32.66 Aligned_cols=30 Identities=20% Similarity=0.145 Sum_probs=21.5
Q ss_pred HHHHHHHhccCCchhhHhcCC-cccceecch
Q 013845 297 SAVMSLLKDIPDEDGDKQFGF-QSISSKLGK 326 (435)
Q Consensus 297 ~~~~~~i~di~D~egD~~~Gi-~Tlpv~lG~ 326 (435)
..+-..+||+.|.|-|++..+ +.=|+.-|+
T Consensus 60 ~aaa~~~Nd~~D~~iD~~~~Rt~~RPlpsG~ 90 (306)
T PRK13362 60 VASGCALNNCIDRDIDAKMQRTRNRVTVTGE 90 (306)
T ss_pred HHHHHHHhChHHhCcCCCCCCCCCCCCCCCC
Confidence 445678999999999987654 344555565
No 99
>PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed
Probab=56.60 E-value=94 Score=32.55 Aligned_cols=21 Identities=19% Similarity=0.208 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhhhhhcccccc
Q 013845 158 LSAVLMNNYVGTVNQVADVEI 178 (435)
Q Consensus 158 l~~~l~~~a~~~iNd~~D~e~ 178 (435)
.+..++..--.++|++++.+.
T Consensus 112 ta~~~~~~ie~a~N~Iw~v~~ 132 (412)
T PRK04214 112 TLLILLHTIEQTFNRIWRVNS 132 (412)
T ss_pred HHHHHHHHHHHHHHHHhCCCC
Confidence 344556777789999998754
No 100
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=53.26 E-value=74 Score=31.29 Aligned_cols=30 Identities=20% Similarity=0.164 Sum_probs=20.8
Q ss_pred HHHHHHHhccCCchhhHhcCC-cccceecch
Q 013845 297 SAVMSLLKDIPDEDGDKQFGF-QSISSKLGK 326 (435)
Q Consensus 297 ~~~~~~i~di~D~egD~~~Gi-~Tlpv~lG~ 326 (435)
..+-..+||+-|.|-|++..+ +.=|+.-|+
T Consensus 48 ~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~ 78 (280)
T TIGR01473 48 AASANAFNMYIDRDIDKKMKRTRNRPLVTGR 78 (280)
T ss_pred HHHHHHHHhhcccCcCCCCCCCCCCCCCCCC
Confidence 445578999999999997543 444554554
No 101
>PLN02878 homogentisate phytyltransferase
Probab=52.21 E-value=74 Score=31.77 Aligned_cols=45 Identities=13% Similarity=0.194 Sum_probs=28.3
Q ss_pred HHHHHHHhhhhhcccccccccCC-CCCcccccccCHHHHHHHHHHHHHH
Q 013845 161 VLMNNYVGTVNQVADVEIDKVNK-PDLPLASGDLSMGTGLAITLTLSLT 208 (435)
Q Consensus 161 ~l~~~a~~~iNd~~D~e~D~~nk-p~RPl~sG~Is~~~A~~~~i~l~~l 208 (435)
.+...+...+||+-|.|-||... +.-|+ ++.++.+..+...+..+
T Consensus 166 ~~f~~~i~i~KDi~DieGD~~~Gi~Tlpv---~lG~~~~~~i~~~ll~~ 211 (280)
T PLN02878 166 CFFSVVIALFKDIPDVEGDRIFGIRSFSV---RLGQKRVFWLCVNLLEM 211 (280)
T ss_pred HHHHHHHHHHhhCcCchhHHHCCCceech---hhChHHHHHHHHHHHHH
Confidence 44445556999999999999754 45555 34455555554444333
No 102
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=51.63 E-value=1.6e+02 Score=29.61 Aligned_cols=34 Identities=18% Similarity=0.263 Sum_probs=22.3
Q ss_pred HHHHHHHHHhhhhhcccccccccCC-CCCcccccc
Q 013845 159 SAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASGD 192 (435)
Q Consensus 159 ~~~l~~~a~~~iNd~~D~e~D~~nk-p~RPl~sG~ 192 (435)
+..+..++-.++.+..|+|.||... +.-|..-|.
T Consensus 180 ~~~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~ 214 (300)
T PRK12876 180 SFGMIIAANDIIYAIQDLEFDRKEGLFSIPARFGE 214 (300)
T ss_pred HHHHHHHHHHHHHHHcCHhhHHHcCCccchHHHCc
Confidence 3344444555677799999999765 566665554
No 103
>COG1295 Rbn Ribonuclease BN family enzyme [Replication, recombination, and repair]
Probab=49.75 E-value=2.3e+02 Score=28.37 Aligned_cols=24 Identities=13% Similarity=0.057 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHhhhhhcccccc
Q 013845 155 KALLSAVLMNNYVGTVNQVADVEI 178 (435)
Q Consensus 155 l~ll~~~l~~~a~~~iNd~~D~e~ 178 (435)
.++.+...+.+.-..+|+.+|.+.
T Consensus 110 ~lwtas~~~~al~~~lN~i~~~~~ 133 (303)
T COG1295 110 ALWTASNGMSALRDALNKIWRVKP 133 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCC
Confidence 344455556666677788887765
No 104
>PRK08238 hypothetical protein; Validated
Probab=47.16 E-value=92 Score=33.48 Aligned_cols=30 Identities=17% Similarity=0.249 Sum_probs=22.1
Q ss_pred HHHHHHHhccCCchhhHhcC-Ccccceecch
Q 013845 297 SAVMSLLKDIPDEDGDKQFG-FQSISSKLGK 326 (435)
Q Consensus 297 ~~~~~~i~di~D~egD~~~G-i~Tlpv~lG~ 326 (435)
..+..++||+-|+|.||+.- +|.=|+.-|+
T Consensus 239 ~sa~~~~ND~~D~e~Dr~~~rk~~RPlasG~ 269 (479)
T PRK08238 239 ASAVYILNDLLDLEADRAHPRKRRRPFASGA 269 (479)
T ss_pred HHHHHHHHhhHHhhhhccCCCCCCCCCCCCC
Confidence 44567899999999999873 3445665565
No 105
>PLN02776 prenyltransferase
Probab=43.45 E-value=3.9e+02 Score=27.51 Aligned_cols=30 Identities=13% Similarity=0.147 Sum_probs=21.8
Q ss_pred HHHHHHHhccCCchhhHhcCC-cccceecch
Q 013845 297 SAVMSLLKDIPDEDGDKQFGF-QSISSKLGK 326 (435)
Q Consensus 297 ~~~~~~i~di~D~egD~~~Gi-~Tlpv~lG~ 326 (435)
..+-..+||+-|.|-|++..+ +.=|+.-|+
T Consensus 42 ~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGr 72 (341)
T PLN02776 42 AASANTLNQVFEVKNDSKMKRTMRRPLPSGR 72 (341)
T ss_pred HHHHHHHHhHHhhhhcccCCCCCCCCCCCCC
Confidence 445578999999999988655 455555555
No 106
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=31.56 E-value=58 Score=34.97 Aligned_cols=55 Identities=7% Similarity=0.068 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccccccccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHH
Q 013845 153 FLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIAL 214 (435)
Q Consensus 153 lll~ll~~~l~~~a~~~iNd~~D~e~D~~nkp~RPl~sG~Is~~~A~~~~i~l~~lgl~l~~ 214 (435)
..+...+.+++.++.-.-+|++|.-+|.....+++ .+.+++..++..+++..++.
T Consensus 355 taLstaaGL~l~iasavsHDiY~~vik~~ase~~~-------v~vaRi~~v~~~vva~~lgi 409 (529)
T COG4147 355 TALSTAAGLLLVIASAVSHDLYAMVIKKGATEKKE-------VRVARIAVVILGVVAILLGI 409 (529)
T ss_pred HHHHHHhhHHHHHHHHHHhHHHHHHhCCCCCccce-------ehhHHHHHHHHHHHHHHhee
Confidence 34566677888888888899999876664222222 34455555566666665553
No 107
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=30.95 E-value=5.6e+02 Score=25.73 Aligned_cols=52 Identities=13% Similarity=-0.022 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhhhhhcccccccccCCCCCcccccccCHHHHHHHHHHHHHHHHH
Q 013845 157 LLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLA 211 (435)
Q Consensus 157 ll~~~l~~~a~~~iNd~~D~e~D~~nkp~RPl~sG~Is~~~A~~~~i~l~~lgl~ 211 (435)
..+.=++|.+.-+..|+.|-+.-| |.+|-+........|...+-.++..++-
T Consensus 69 A~aiEliH~asLiHDDI~D~s~~R---Rg~pt~~~~~G~~~Ail~GD~L~~~a~~ 120 (319)
T TIGR02748 69 AVALELIHMASLVHDDVIDDADLR---RGRPTIKSKWGNRIAMYTGDYLFAKSLE 120 (319)
T ss_pred HHHHHHHHHHHHHhccccCCCCCC---CCCcCHHHHhChHHHHHHHHHHHHHHHH
Confidence 345668999999999997765433 4566666666677776666555544443
No 108
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=30.24 E-value=2.4e+02 Score=22.91 Aligned_cols=37 Identities=22% Similarity=0.157 Sum_probs=30.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccc
Q 013845 145 LTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKV 181 (435)
Q Consensus 145 ~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~ 181 (435)
+++.++.++.+..++..+...+....|..+|...|++
T Consensus 52 ~t~g~~~g~~~~~~~~~l~~~Yv~~An~~~D~l~~~i 88 (91)
T PF04341_consen 52 LTLGIVLGLGQIVFAWVLTWLYVRRANREFDPLARAI 88 (91)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHH
Confidence 5666666777888888888999999999999887765
No 109
>PF04284 DUF441: Protein of unknown function (DUF441); InterPro: IPR007382 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 4 TM domains.
Probab=26.16 E-value=3.8e+02 Score=24.00 Aligned_cols=15 Identities=27% Similarity=0.583 Sum_probs=12.6
Q ss_pred CcccccccCHHHHHH
Q 013845 186 LPLASGDLSMGTGLA 200 (435)
Q Consensus 186 RPl~sG~Is~~~A~~ 200 (435)
-|+++|+++.++...
T Consensus 59 vPiAtGki~~~~l~~ 73 (140)
T PF04284_consen 59 VPIATGKIGFKDLLN 73 (140)
T ss_pred ccccCCCcCHHHHHH
Confidence 599999999998743
No 110
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=22.23 E-value=1.1e+02 Score=22.05 Aligned_cols=21 Identities=10% Similarity=0.145 Sum_probs=16.1
Q ss_pred HHHHHHHHhhhhhcccccccc
Q 013845 160 AVLMNNYVGTVNQVADVEIDK 180 (435)
Q Consensus 160 ~~l~~~a~~~iNd~~D~e~D~ 180 (435)
..+.-.+..++|.+.|.++|=
T Consensus 14 ~~Cl~lyl~ald~~CDQg~~F 34 (47)
T PRK10299 14 LACLLLWAQVFNMMCDQDVQF 34 (47)
T ss_pred HHHHHHHHHHHHHHhcCCccc
Confidence 334557888999999998764
No 111
>COG0818 DgkA Diacylglycerol kinase [Cell envelope biogenesis, outer membrane]
Probab=21.15 E-value=5.7e+02 Score=22.41 Aligned_cols=78 Identities=13% Similarity=0.088 Sum_probs=43.7
Q ss_pred chhhhHHHHHHHHHHHhhhcc------chHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 013845 101 STSFWDVLLKKLHALYVFTRP------FAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVA 174 (435)
Q Consensus 101 ~~~~~~~~~~~l~ay~~l~Rp------~~~~~~~l~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~ 174 (435)
.+++++.....++......|- +.+.. .+...++.++.. +.. -.+.+++.+++....-.+|.-.
T Consensus 8 ~~rl~~a~~ys~~Gl~~a~~~E~afR~e~~~~-~~~i~~~~~l~~------~~~----e~lll~~si~lvl~vEllNTAI 76 (123)
T COG0818 8 FRRLIKAFGYSLKGLKAAWKEEAAFRQELLAA-LVALVLAFFLGV------SAI----EWLLLILSIFLVLIVELLNTAI 76 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHhCC------cHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666655555553 33322 222334443321 211 1234556677777888899998
Q ss_pred cccccccCCCCCccc
Q 013845 175 DVEIDKVNKPDLPLA 189 (435)
Q Consensus 175 D~e~D~~nkp~RPl~ 189 (435)
+.-.|++.+...|++
T Consensus 77 Ea~VD~~s~e~hela 91 (123)
T COG0818 77 EAVVDLISPEYHELA 91 (123)
T ss_pred HHHHHHcccchhHHH
Confidence 888888866555543
Done!