Query 013845
Match_columns 435
No_of_seqs 308 out of 2107
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 18:11:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013845.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013845hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nx7_A Nematocyst outer WALL a 51.4 2.6 9E-05 25.2 -0.3 14 15-28 3-16 (28)
2 3m0g_A Farnesyl diphosphate sy 22.6 40 0.0014 32.4 2.4 41 295-335 207-258 (297)
3 3kra_B Geranyl diphosphate syn 22.3 1.3E+02 0.0045 28.3 6.0 43 298-340 74-116 (274)
4 3lsn_A Geranyltranstransferase 19.2 35 0.0012 32.9 1.2 42 295-336 214-266 (304)
5 3ts7_A Geranyltranstransferase 19.2 25 0.00086 34.3 0.2 55 156-213 75-131 (324)
6 3lom_A Geranyltranstransferase 18.7 36 0.0012 33.0 1.2 55 155-212 74-130 (313)
7 2kdc_A Diacylglycerol kinase; 18.2 4.1E+02 0.014 21.8 9.9 79 102-190 8-91 (121)
8 4f62_A Geranyltranstransferase 16.7 35 0.0012 33.2 0.6 55 155-212 69-125 (317)
9 3p8r_A Geranyltranstransferase 15.7 42 0.0015 32.2 0.9 53 157-212 76-130 (302)
10 3p8l_A Geranyltranstransferase 15.3 48 0.0016 31.9 1.2 54 156-212 76-131 (302)
No 1
>2nx7_A Nematocyst outer WALL antigen; cysteine rich, disulfide bonds, rich in turns, structural protein; NMR {Hydra vulgaris}
Probab=51.42 E-value=2.6 Score=25.22 Aligned_cols=14 Identities=29% Similarity=0.510 Sum_probs=11.1
Q ss_pred ccccccccccCCCC
Q 013845 15 YYYPLQHAGCDKTL 28 (435)
Q Consensus 15 ~~~~~~~~~~~~~~ 28 (435)
.-|+|||.||..+-
T Consensus 3 npcslqqpgcssac 16 (28)
T 2nx7_A 3 NPCSLQQPGCSSAC 16 (28)
T ss_dssp CTHHHHSTTCCGGG
T ss_pred CCccccCCCccccc
Confidence 35899999998654
No 2
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=22.63 E-value=40 Score=32.40 Aligned_cols=41 Identities=20% Similarity=0.228 Sum_probs=24.7
Q ss_pred HHHHHHHHHhccCCchh-----------hHhcCCcccceecchhhHHHHHHH
Q 013845 295 TISAVMSLLKDIPDEDG-----------DKQFGFQSISSKLGKENVLRLCVY 335 (435)
Q Consensus 295 ~~~~~~~~i~di~D~eg-----------D~~~Gi~Tlpv~lG~k~a~~l~~~ 335 (435)
-+.+++.+..|+.|+.+ |.+.|+.|+|+.+|.+.+.....-
T Consensus 207 ~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~~~~ 258 (297)
T 3m0g_A 207 ALGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATFVSLLGLAGAKSRAAD 258 (297)
T ss_dssp HHHHHHHHHTTCC---------------------CCHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHH
Confidence 44667788999999865 667899999999999888765443
No 3
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=22.28 E-value=1.3e+02 Score=28.26 Aligned_cols=43 Identities=21% Similarity=0.206 Sum_probs=29.9
Q ss_pred HHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHHHH
Q 013845 298 AVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFA 340 (435)
Q Consensus 298 ~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~a 340 (435)
.+..+-.|+++.++|.+.|+.|.=.++|...+....-.++..+
T Consensus 74 ~aSLIHDDI~~dD~d~RRG~pt~h~~~G~~~AIlaGD~Ll~~A 116 (274)
T 3kra_B 74 AAAYVHEHLPLTDGSRPVSKPAIQHKYGPNVELLTGDGIVPFG 116 (274)
T ss_dssp HHHHHHHTCCCSSSSSCCCSSCCCCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCcccCCccCCCCCCchhhcChHHHHHHHHHHHHHH
Confidence 3446778999444466799999999999987755444444433
No 4
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=19.23 E-value=35 Score=32.89 Aligned_cols=42 Identities=17% Similarity=0.158 Sum_probs=27.1
Q ss_pred HHHHHHHHHhccCCchh-----------hHhcCCcccceecchhhHHHHHHHH
Q 013845 295 TISAVMSLLKDIPDEDG-----------DKQFGFQSISSKLGKENVLRLCVYA 336 (435)
Q Consensus 295 ~~~~~~~~i~di~D~eg-----------D~~~Gi~Tlpv~lG~k~a~~l~~~l 336 (435)
-+.+++.+..|+.|+.+ |.+.|+.|+|+.+|.+.+.....-+
T Consensus 214 ~lGlaFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~ 266 (304)
T 3lsn_A 214 AIGLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPALLGLAAAKEYALEL 266 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC------------CCHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCChHHhCCCcccHHhcCCccHHHHHHHHHHHHHHHHH
Confidence 34566778888888765 6678999999999998887654433
No 5
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=19.18 E-value=25 Score=34.32 Aligned_cols=55 Identities=9% Similarity=0.054 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHhhhhhc--ccccccccCCCCCcccccccCHHHHHHHHHHHHHHHHHHH
Q 013845 156 ALLSAVLMNNYVGTVNQV--ADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIA 213 (435)
Q Consensus 156 ~ll~~~l~~~a~~~iNd~--~D~e~D~~nkp~RPl~sG~Is~~~A~~~~i~l~~lgl~l~ 213 (435)
+..+.=+++.+.-+..|+ .|-+.=| |.+|-.-.......|...+-.+...++-+.
T Consensus 75 ~A~avEliH~aSLIHDDip~mD~~~~R---RG~pt~h~~~G~~~AIlaGD~L~~~Af~~l 131 (324)
T 3ts7_A 75 PACAVEFIHVYSLIHDDLPAMDDDDLR---RGKPTCHKAYDEATAILAGDGLQALAFHVL 131 (324)
T ss_dssp HHHHHHHHHHHHHHHHTSTTTTCCSEE---TTEECHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcccccCCCcc---CCCCchhhhcChHHHHHHHHHHHHHHHHHH
Confidence 344567889999999998 6654333 455655556667777776666665555443
No 6
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=18.71 E-value=36 Score=32.99 Aligned_cols=55 Identities=9% Similarity=0.070 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHhhhhhc--ccccccccCCCCCcccccccCHHHHHHHHHHHHHHHHHH
Q 013845 155 KALLSAVLMNNYVGTVNQV--ADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAI 212 (435)
Q Consensus 155 l~ll~~~l~~~a~~~iNd~--~D~e~D~~nkp~RPl~sG~Is~~~A~~~~i~l~~lgl~l 212 (435)
-+..+.=+++.+.-+..|+ .|-+.= +|.+|-.-.......|...+=.+...++-+
T Consensus 74 ~~A~aiEliH~aSLIHDDip~mD~~~~---RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~ 130 (313)
T 3lom_A 74 IIAAALELTHCYSLIHDDLPAMDNDDL---RRGKPSCHKAFDEATAILVGDGMQALAIEV 130 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTTTCCSE---ETTEECHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCcccccCCCc---cCCCCCchhhcChHHHHHHHHHHHHHHHHH
Confidence 3445667889999999998 554432 345666656667777776665555555443
No 7
>2kdc_A Diacylglycerol kinase; membrane protein, solution kinase, DAGK, cell inner membrane, cell membrane, membrane, phospholipid biosynthesis; NMR {Escherichia coli}
Probab=18.17 E-value=4.1e+02 Score=21.84 Aligned_cols=79 Identities=15% Similarity=0.130 Sum_probs=44.8
Q ss_pred hhhhHHHHHHHHHHHhhhccchHHHH-----HHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Q 013845 102 TSFWDVLLKKLHALYVFTRPFAMIGT-----IVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADV 176 (435)
Q Consensus 102 ~~~~~~~~~~l~ay~~l~Rp~~~~~~-----~l~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~ 176 (435)
++++++....++......|-+.-+-. .+...+|.++. .+...+ ..++.++.+....-.+|.-.+.
T Consensus 8 ~r~~~s~~yA~~Gl~~a~~~E~~fr~~~~~~~~~i~~~~~l~---~s~~e~-------~~li~~i~lVl~~EllNTAIE~ 77 (121)
T 2kdc_A 8 TRIIKAAGYSWKGLRAAWINEAAFRQEGVAVLLAVVIACWLD---VDAITR-------VLLISSVMLVMIVEILNSAIEA 77 (121)
T ss_dssp HHHHHHHHTHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHCC---CCCSHH-------HHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHh---CCHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666654332222 22223333332 122222 2234456667778889999999
Q ss_pred cccccCCCCCcccc
Q 013845 177 EIDKVNKPDLPLAS 190 (435)
Q Consensus 177 e~D~~nkp~RPl~s 190 (435)
-.|++.+.+.|++.
T Consensus 78 vvD~v~~e~h~lak 91 (121)
T 2kdc_A 78 VVDRIGSEYHELSG 91 (121)
T ss_dssp HHTTCCCCSCTTSH
T ss_pred HHHHcCCccCHHHH
Confidence 89998777777753
No 8
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=16.70 E-value=35 Score=33.16 Aligned_cols=55 Identities=9% Similarity=0.062 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHhhhhhc--ccccccccCCCCCcccccccCHHHHHHHHHHHHHHHHHH
Q 013845 155 KALLSAVLMNNYVGTVNQV--ADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAI 212 (435)
Q Consensus 155 l~ll~~~l~~~a~~~iNd~--~D~e~D~~nkp~RPl~sG~Is~~~A~~~~i~l~~lgl~l 212 (435)
-+..+.=+++.+.-+..|+ .|-+.= +|.+|-.-.......|...+=.+...++-+
T Consensus 69 ~~A~avEliH~aSLIHDDip~mD~s~~---RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~ 125 (317)
T 4f62_A 69 ASAAALESIHAYSLIHDDLPAMDNDEL---RRGKPTCHIQFDEATAILAGDALQTFAFEL 125 (317)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCC----------CCHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCcccccCCCC---cCCCccHHhhcCHHHHHHHHHHHHHHHHHH
Confidence 3445667889999999999 565433 345565555666677766665555554433
No 9
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=15.74 E-value=42 Score=32.25 Aligned_cols=53 Identities=11% Similarity=0.080 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhhhhhc--ccccccccCCCCCcccccccCHHHHHHHHHHHHHHHHHH
Q 013845 157 LLSAVLMNNYVGTVNQV--ADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAI 212 (435)
Q Consensus 157 ll~~~l~~~a~~~iNd~--~D~e~D~~nkp~RPl~sG~Is~~~A~~~~i~l~~lgl~l 212 (435)
..+.=+++.+.-+..|+ .|-+.=| |.+|-.-.+.....|...+-.+...++-+
T Consensus 76 A~aiEliH~asLIHDDIp~mD~s~~R---RG~pt~h~~~G~~~AIlaGD~L~~~a~~~ 130 (302)
T 3p8r_A 76 ASAVECIHAYSLIHDDLPAMDDDELR---RGKPTCHIQFDEATAILTGDALQTLAFTI 130 (302)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHCCC-----------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCcccccCCCcC---CCCcchhhhcCHHHHHHHHHHHHHHHHHH
Confidence 34566889999999998 6654433 44555555566666766665555555443
No 10
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=15.35 E-value=48 Score=31.91 Aligned_cols=54 Identities=11% Similarity=0.063 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhhhhhc--ccccccccCCCCCcccccccCHHHHHHHHHHHHHHHHHH
Q 013845 156 ALLSAVLMNNYVGTVNQV--ADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAI 212 (435)
Q Consensus 156 ~ll~~~l~~~a~~~iNd~--~D~e~D~~nkp~RPl~sG~Is~~~A~~~~i~l~~lgl~l 212 (435)
+..+.=+++.+.-+..|+ .|-+.=| |.+|-.-.......|...+=.+...++-+
T Consensus 76 ~A~avEliH~asLIHDDIP~mD~s~~R---RG~pt~h~~~G~~~AIlaGD~Ll~~A~~~ 131 (302)
T 3p8l_A 76 VAASLEMIHTYSLIHDDLPAMDDDDLR---RGKPTNHKVFGEATAILAGDGLLTGAFQL 131 (302)
T ss_dssp HHHHHHHHHHHHHHHHHSTTTTCCSEE---TTEECHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCchhccCCCcc---CCCcchhhhcChHHHHHHHHHHHHHHHHH
Confidence 445667899999999999 7765433 44555555566666666555555555433
Done!