Query 013845
Match_columns 435
No_of_seqs 308 out of 2107
Neff 6.7
Searched_HMMs 13730
Date Mon Mar 25 18:11:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013845.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013845hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rtra_ a.128.1.1 (A:) Farnesy 71.4 25 0.0018 31.1 12.9 57 156-213 66-122 (290)
2 d1rqja_ a.128.1.1 (A:) Farnesy 19.4 46 0.0033 29.3 4.5 45 296-340 76-121 (299)
3 d1rtra_ a.128.1.1 (A:) Farnesy 14.3 69 0.005 27.9 4.3 41 297-337 74-115 (290)
4 d1iwga7 f.35.1.1 (A:7-37,A:331 13.0 1.6E+02 0.012 23.7 6.2 10 96-105 25-34 (199)
5 d1omca_ g.3.6.1 (A:) Conotoxin 12.3 37 0.0027 18.7 1.0 14 66-79 9-24 (27)
6 d2j7ja2 g.37.1.1 (A:29-57) Tra 10.6 25 0.0018 20.0 -0.1 14 20-33 7-20 (29)
7 d2cosa1 a.5.2.1 (A:8-48) Serin 9.0 6.1 0.00044 24.5 -3.5 21 18-38 8-28 (41)
8 d1iwga8 f.35.1.1 (A:513-566,A: 6.9 5.1E+02 0.037 20.7 7.2 21 156-176 118-138 (222)
9 d1v4ea_ a.128.1.1 (A:) Octopre 6.3 1.4E+02 0.01 25.6 3.1 40 297-337 66-105 (280)
10 d1x3ca1 g.37.1.1 (A:8-68) Zinc 5.9 1.2E+02 0.0086 19.8 1.6 19 9-27 13-31 (61)
No 1
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=71.38 E-value=25 Score=31.13 Aligned_cols=57 Identities=7% Similarity=0.056 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHhhhhhcccccccccCCCCCcccccccCHHHHHHHHHHHHHHHHHHH
Q 013845 156 ALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIA 213 (435)
Q Consensus 156 ~ll~~~l~~~a~~~iNd~~D~e~D~~nkp~RPl~sG~Is~~~A~~~~i~l~~lgl~l~ 213 (435)
...+.=++|.+.-+..|+.|.|.|.. +|.+|-...+.....|...+-.+...++-+.
T Consensus 66 ~A~avEllH~asLIHDDI~d~D~~~~-RRg~pt~~~~~g~~~Ail~Gd~l~~~a~~l~ 122 (290)
T d1rtra_ 66 SAIALEMIHTYSLIHDDLPAMDNDDY-RRGKLTNHKVYGEWTAILAGDALLTKAFELI 122 (290)
T ss_dssp HHHHHHHHHHHHHHHHHSTTTTCCSE-ETTEECHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchhhhhhhhh-hhcchhhHHHhhhhHHHHcCcchhHHHHHHH
Confidence 44566789999999999998876653 3456666666777777766666555555443
No 2
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=19.45 E-value=46 Score=29.34 Aligned_cols=45 Identities=24% Similarity=0.281 Sum_probs=32.9
Q ss_pred HHHHHHHHhccCCchh-hHhcCCcccceecchhhHHHHHHHHHHHH
Q 013845 296 ISAVMSLLKDIPDEDG-DKQFGFQSISSKLGKENVLRLCVYALFFA 340 (435)
Q Consensus 296 ~~~~~~~i~di~D~eg-D~~~Gi~Tlpv~lG~k~a~~l~~~l~~~a 340 (435)
+-.+..+..|++|.+. |.+.|.+|.-.++|...+....-.++..+
T Consensus 76 lH~asLiHDDI~d~d~~~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a 121 (299)
T d1rqja_ 76 IHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLA 121 (299)
T ss_dssp HHHHHHHHHTSTTTTCCCEETTEECHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccchhhhhhhcccccccceeeeCcchhhhhcchHHHHH
Confidence 3445567789998887 48999999999999988765544444333
No 3
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=14.32 E-value=69 Score=27.94 Aligned_cols=41 Identities=17% Similarity=0.114 Sum_probs=30.6
Q ss_pred HHHHHHHhccCCchhh-HhcCCcccceecchhhHHHHHHHHH
Q 013845 297 SAVMSLLKDIPDEDGD-KQFGFQSISSKLGKENVLRLCVYAL 337 (435)
Q Consensus 297 ~~~~~~i~di~D~egD-~~~Gi~Tlpv~lG~k~a~~l~~~l~ 337 (435)
-.+..+..|++|+++| .+.|+.|.-.++|...+....-.++
T Consensus 74 H~asLIHDDI~d~D~~~~RRg~pt~~~~~g~~~Ail~Gd~l~ 115 (290)
T d1rtra_ 74 HTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALL 115 (290)
T ss_dssp HHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHhcchhhhhhhhhhhcchhhHHHhhhhHHHHcCcchh
Confidence 4445677899988775 6889999999999987765444443
No 4
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=12.96 E-value=1.6e+02 Score=23.72 Aligned_cols=10 Identities=20% Similarity=0.026 Sum_probs=4.3
Q ss_pred CcccCchhhh
Q 013845 96 EDDINSTSFW 105 (435)
Q Consensus 96 ~~~~~~~~~~ 105 (435)
|-++||.+..
T Consensus 25 ~v~~~~~~fi 34 (199)
T d1iwga7 25 PVAQYPTPFV 34 (199)
T ss_dssp CCCSSCCHHH
T ss_pred EEeecCcHHH
Confidence 3344554433
No 5
>d1omca_ g.3.6.1 (A:) Conotoxin {Sea snail (Conus geographus), G IVa [TaxId: 6491]}
Probab=12.28 E-value=37 Score=18.70 Aligned_cols=14 Identities=29% Similarity=0.830 Sum_probs=8.3
Q ss_pred CCCCc--ccCCCCCcc
Q 013845 66 NENTS--SRNCKPFNK 79 (435)
Q Consensus 66 ~~~~~--~~~~~~~~~ 79 (435)
.+++| |+.|||+.|
T Consensus 9 sptsynccrscnpytk 24 (27)
T d1omca_ 9 SPTSYNCCRSCNPYTK 24 (27)
T ss_dssp CTTTTCBSSCEETTTT
T ss_pred CCcccchhcccCcccc
Confidence 34444 677777654
No 6
>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}
Probab=10.61 E-value=25 Score=20.00 Aligned_cols=14 Identities=50% Similarity=1.025 Sum_probs=11.4
Q ss_pred cccccCCCCCcccc
Q 013845 20 QHAGCDKTLQLPLT 33 (435)
Q Consensus 20 ~~~~~~~~~~~~~~ 33 (435)
.|.|||+.-.+|-|
T Consensus 7 ~hegcdk~fs~ps~ 20 (29)
T d2j7ja2 7 PHEGCDKRFSLPSR 20 (29)
T ss_dssp CSTTCCCEESSHHH
T ss_pred CccCccccccCHHH
Confidence 48999998888854
No 7
>d2cosa1 a.5.2.1 (A:8-48) Serine/threonine protein kinase LATS2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.02 E-value=6.1 Score=24.48 Aligned_cols=21 Identities=33% Similarity=0.525 Sum_probs=13.1
Q ss_pred cccccccCCCCCcccccccCc
Q 013845 18 PLQHAGCDKTLQLPLTKVHGG 38 (435)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~ 38 (435)
.||++|||+....-.-+-.|+
T Consensus 8 dl~~aG~D~~m~iral~qt~~ 28 (41)
T d2cosa1 8 ELVNAGCDQEMAGRALKQTGS 28 (41)
T ss_dssp HHHHHHCCHHHHHHHHHHHTS
T ss_pred HHHHcCCCHHHHHHHHHHhCc
Confidence 478999998655443333343
No 8
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=6.89 E-value=5.1e+02 Score=20.72 Aligned_cols=21 Identities=14% Similarity=0.039 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHhhhhhcccc
Q 013845 156 ALLSAVLMNNYVGTVNQVADV 176 (435)
Q Consensus 156 ~ll~~~l~~~a~~~iNd~~D~ 176 (435)
.++.+.....+....+++.+.
T Consensus 118 i~l~Gi~v~~~i~~~~~~~~~ 138 (222)
T d1iwga8 118 LTTIGLSAKNAILIVEFAKDL 138 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhHHHHHHHHhccc
Confidence 344455556666666665543
No 9
>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga maritima [TaxId: 2336]}
Probab=6.34 E-value=1.4e+02 Score=25.58 Aligned_cols=40 Identities=18% Similarity=0.148 Sum_probs=28.7
Q ss_pred HHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHH
Q 013845 297 SAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYAL 337 (435)
Q Consensus 297 ~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~ 337 (435)
-.+..+..|+.| ++|.+.|.+|.-..+|...+....-.++
T Consensus 66 H~asLIhDDi~D-~s~~RRG~pt~h~~~g~~~ail~gd~l~ 105 (280)
T d1v4ea_ 66 HLASLLHDDVID-GARFRRGKETINFMYGDKAAVAAGDLVL 105 (280)
T ss_dssp HHHHHHHHHHHH-TCSEETTEECHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHhhhHhh-hcccccccchhhhccchhhhhhhHHHHH
Confidence 334456677877 5678999999999999987765444443
No 10
>d1x3ca1 g.37.1.1 (A:8-68) Zinc finger protein 292, ZNF292 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.85 E-value=1.2e+02 Score=19.79 Aligned_cols=19 Identities=32% Similarity=0.574 Sum_probs=13.8
Q ss_pred CCCCCCccccccccccCCC
Q 013845 9 SSFSPKYYYPLQHAGCDKT 27 (435)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~ 27 (435)
..|||-.-|---||||..+
T Consensus 13 t~~spyrpyrcvhqgc~aa 31 (61)
T d1x3ca1 13 TRYSPYRPYRCVHQGCFAA 31 (61)
T ss_dssp SSSCSSCSCBCCSTTCCCB
T ss_pred cccCCCCceeeeccchhhh
Confidence 4577777777788888754
Done!