Query 013846
Match_columns 435
No_of_seqs 153 out of 1020
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 07:58:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013846.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013846hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02696 1-deoxy-D-xylulose-5- 100.0 6E-161 1E-165 1235.1 38.1 405 26-431 3-412 (454)
2 COG0743 Dxr 1-deoxy-D-xylulose 100.0 1E-156 3E-161 1171.3 31.2 349 76-431 1-349 (385)
3 TIGR00243 Dxr 1-deoxy-D-xylulo 100.0 1E-155 3E-160 1176.4 34.9 353 76-431 1-354 (389)
4 PRK12464 1-deoxy-D-xylulose 5- 100.0 5E-154 1E-158 1163.8 33.2 346 81-431 1-346 (383)
5 PRK05447 1-deoxy-D-xylulose 5- 100.0 3E-145 7E-150 1102.6 35.1 351 76-431 1-351 (385)
6 PF08436 DXP_redisom_C: 1-deox 100.0 6.4E-57 1.4E-61 370.5 2.3 84 221-304 1-84 (84)
7 PF02670 DXP_reductoisom: 1-de 100.0 1.6E-46 3.5E-51 332.5 13.5 129 79-207 1-129 (129)
8 PF13288 DXPR_C: DXP reductois 100.0 7E-38 1.5E-42 274.2 3.7 93 336-431 1-93 (121)
9 PRK06349 homoserine dehydrogen 98.3 3.5E-06 7.7E-11 87.6 9.4 159 76-273 3-181 (426)
10 PF03447 NAD_binding_3: Homose 98.0 1.4E-06 3.1E-11 74.1 0.2 110 84-222 1-115 (117)
11 PRK13303 L-aspartate dehydroge 97.9 8.1E-05 1.7E-09 72.9 10.9 145 76-254 1-148 (265)
12 PRK11579 putative oxidoreducta 97.9 0.0013 2.8E-08 65.8 19.4 209 77-338 5-229 (346)
13 PRK06270 homoserine dehydrogen 97.9 6.1E-05 1.3E-09 76.3 9.9 210 76-316 2-247 (341)
14 COG1748 LYS9 Saccharopine dehy 97.6 0.00081 1.8E-08 70.2 12.3 218 76-331 1-230 (389)
15 PF01408 GFO_IDH_MocA: Oxidore 97.6 0.001 2.2E-08 55.7 10.8 90 78-197 2-91 (120)
16 PRK13302 putative L-aspartate 97.5 0.0013 2.8E-08 64.8 12.8 144 75-252 5-149 (271)
17 PRK08374 homoserine dehydrogen 97.5 0.00061 1.3E-08 69.2 10.5 126 77-222 3-145 (336)
18 PRK06392 homoserine dehydrogen 97.4 0.00081 1.8E-08 68.4 10.2 206 78-313 2-236 (326)
19 PRK13304 L-aspartate dehydroge 97.4 0.0032 6.9E-08 61.7 13.3 145 77-254 2-148 (265)
20 PRK06813 homoserine dehydrogen 97.4 0.00031 6.8E-09 72.0 6.2 172 77-273 3-199 (346)
21 PLN02819 lysine-ketoglutarate 97.3 0.0042 9.2E-08 71.9 15.4 194 75-296 568-789 (1042)
22 COG0673 MviM Predicted dehydro 97.3 0.0023 5E-08 62.5 10.9 212 75-335 2-234 (342)
23 TIGR03215 ac_ald_DH_ac acetald 97.1 0.0077 1.7E-07 60.5 12.7 90 77-196 2-92 (285)
24 PF03435 Saccharop_dh: Sacchar 97.0 0.0097 2.1E-07 60.3 12.6 185 79-292 1-204 (386)
25 PF01118 Semialdhyde_dh: Semia 96.9 0.0016 3.4E-08 56.2 5.5 35 78-113 1-35 (121)
26 TIGR01761 thiaz-red thiazoliny 96.9 0.0056 1.2E-07 62.8 10.0 127 76-236 3-131 (343)
27 PRK10206 putative oxidoreducta 96.8 0.088 1.9E-06 53.3 18.0 201 76-329 1-217 (344)
28 PF13460 NAD_binding_10: NADH( 96.8 0.0099 2.1E-07 52.8 9.6 37 79-119 1-37 (183)
29 PRK00436 argC N-acetyl-gamma-g 96.8 0.0026 5.7E-08 64.6 6.6 94 75-194 1-94 (343)
30 PRK09466 metL bifunctional asp 96.7 0.0068 1.5E-07 68.5 9.8 215 76-320 458-703 (810)
31 COG0460 ThrA Homoserine dehydr 96.7 0.003 6.4E-08 64.9 5.8 121 76-221 3-135 (333)
32 PRK08300 acetaldehyde dehydrog 96.6 0.012 2.5E-07 59.9 9.8 159 77-268 5-177 (302)
33 PRK04207 glyceraldehyde-3-phos 96.6 0.014 2.9E-07 59.6 10.0 110 76-200 1-110 (341)
34 PF05368 NmrA: NmrA-like famil 96.6 0.01 2.3E-07 55.2 8.4 98 79-181 1-107 (233)
35 COG4091 Predicted homoserine d 96.5 0.032 7E-07 58.3 12.1 157 70-236 11-171 (438)
36 PRK00048 dihydrodipicolinate r 96.3 0.01 2.2E-07 57.9 7.0 91 76-199 1-91 (257)
37 PRK09436 thrA bifunctional asp 96.2 0.022 4.8E-07 64.5 10.0 129 75-222 464-604 (819)
38 TIGR00036 dapB dihydrodipicoli 96.2 0.027 5.9E-07 55.4 9.3 98 77-199 2-99 (266)
39 TIGR01850 argC N-acetyl-gamma- 95.9 0.025 5.5E-07 57.7 7.7 34 77-111 1-34 (346)
40 PLN02700 homoserine dehydrogen 95.6 0.098 2.1E-06 54.8 10.9 56 166-222 107-162 (377)
41 PRK11863 N-acetyl-gamma-glutam 95.3 0.026 5.5E-07 57.6 5.4 56 76-133 2-58 (313)
42 TIGR01832 kduD 2-deoxy-D-gluco 95.3 0.19 4.2E-06 46.5 10.6 64 76-142 5-69 (248)
43 PLN02968 Probable N-acetyl-gam 95.2 0.022 4.8E-07 59.2 4.5 39 75-114 37-75 (381)
44 PRK08040 putative semialdehyde 95.1 0.043 9.3E-07 56.3 6.4 38 77-115 5-44 (336)
45 cd01078 NAD_bind_H4MPT_DH NADP 95.0 0.19 4.1E-06 46.3 9.6 44 77-124 29-72 (194)
46 PRK08219 short chain dehydroge 95.0 0.13 2.8E-06 46.7 8.4 40 76-120 3-42 (227)
47 PLN02778 3,5-epimerase/4-reduc 94.9 0.088 1.9E-06 51.9 7.5 52 77-130 10-62 (298)
48 PRK06728 aspartate-semialdehyd 94.8 0.061 1.3E-06 55.6 6.4 36 77-113 6-44 (347)
49 PRK10538 malonic semialdehyde 94.7 0.32 6.8E-06 45.6 10.5 84 77-179 1-85 (248)
50 PRK06935 2-deoxy-D-gluconate 3 94.7 0.32 7E-06 45.7 10.6 65 76-142 15-80 (258)
51 PRK12829 short chain dehydroge 94.6 0.43 9.3E-06 44.4 11.1 84 76-178 11-96 (264)
52 PRK08267 short chain dehydroge 94.6 0.36 7.8E-06 45.3 10.7 46 76-125 1-46 (260)
53 PLN02657 3,8-divinyl protochlo 94.6 0.32 6.8E-06 50.1 11.1 34 74-109 58-91 (390)
54 PF04321 RmlD_sub_bind: RmlD s 94.6 0.11 2.3E-06 51.2 7.2 53 78-132 2-58 (286)
55 PRK06947 glucose-1-dehydrogena 94.5 0.38 8.2E-06 44.6 10.4 53 75-130 1-56 (248)
56 TIGR03855 NAD_NadX aspartate d 94.5 0.47 1E-05 46.3 11.4 90 160-254 30-124 (229)
57 PRK07806 short chain dehydroge 94.4 0.53 1.1E-05 43.6 11.2 65 76-142 6-73 (248)
58 TIGR01214 rmlD dTDP-4-dehydror 94.4 0.11 2.5E-06 49.2 6.9 52 78-131 1-56 (287)
59 PRK08063 enoyl-(acyl carrier p 94.3 0.34 7.4E-06 44.8 9.7 83 76-176 4-90 (250)
60 PRK07326 short chain dehydroge 94.3 0.54 1.2E-05 43.1 10.8 44 77-124 7-50 (237)
61 PRK06101 short chain dehydroge 94.3 0.35 7.6E-06 45.1 9.6 65 76-144 1-65 (240)
62 PRK07024 short chain dehydroge 94.2 0.64 1.4E-05 43.8 11.4 45 76-124 2-46 (257)
63 PRK12828 short chain dehydroge 94.1 0.47 1E-05 43.1 10.0 41 76-120 7-47 (239)
64 PRK12825 fabG 3-ketoacyl-(acyl 94.0 0.5 1.1E-05 43.0 9.9 85 75-177 5-93 (249)
65 COG0136 Asd Aspartate-semialde 94.0 0.1 2.3E-06 53.9 5.9 205 76-324 1-244 (334)
66 PRK05557 fabG 3-ketoacyl-(acyl 94.0 0.9 1.9E-05 41.4 11.5 64 76-142 5-72 (248)
67 PRK12742 oxidoreductase; Provi 93.9 0.49 1.1E-05 43.4 9.8 50 76-128 6-55 (237)
68 PRK05653 fabG 3-ketoacyl-(acyl 93.9 0.87 1.9E-05 41.5 11.3 83 76-177 5-91 (246)
69 PRK08664 aspartate-semialdehyd 93.9 0.07 1.5E-06 54.3 4.6 33 75-108 2-34 (349)
70 TIGR01851 argC_other N-acetyl- 93.9 0.09 2E-06 53.7 5.3 55 78-133 3-57 (310)
71 PRK13394 3-hydroxybutyrate deh 93.9 0.62 1.3E-05 43.3 10.4 66 76-143 7-74 (262)
72 PRK09186 flagellin modificatio 93.9 0.59 1.3E-05 43.4 10.3 45 76-124 4-48 (256)
73 PRK07060 short chain dehydroge 93.8 0.57 1.2E-05 43.1 10.1 62 76-142 9-70 (245)
74 PRK07825 short chain dehydroge 93.8 0.78 1.7E-05 43.5 11.2 81 76-176 5-86 (273)
75 PRK07231 fabG 3-ketoacyl-(acyl 93.8 0.79 1.7E-05 42.2 10.9 82 76-176 5-89 (251)
76 PRK06482 short chain dehydroge 93.7 0.79 1.7E-05 43.5 11.1 48 76-127 2-49 (276)
77 PRK08263 short chain dehydroge 93.7 0.86 1.9E-05 43.4 11.4 47 76-126 3-49 (275)
78 TIGR02622 CDP_4_6_dhtase CDP-g 93.7 0.4 8.6E-06 47.6 9.4 32 77-110 5-36 (349)
79 TIGR01181 dTDP_gluc_dehyt dTDP 93.7 0.2 4.4E-06 47.5 7.0 32 78-109 1-32 (317)
80 PRK12481 2-deoxy-D-gluconate 3 93.7 0.66 1.4E-05 43.8 10.4 65 76-143 8-73 (251)
81 PRK07523 gluconate 5-dehydroge 93.6 0.65 1.4E-05 43.4 10.2 82 76-176 10-95 (255)
82 PRK07454 short chain dehydroge 93.6 1 2.2E-05 41.7 11.2 44 75-122 5-48 (241)
83 PRK05693 short chain dehydroge 93.6 0.39 8.3E-06 45.7 8.7 40 76-119 1-40 (274)
84 PRK12823 benD 1,6-dihydroxycyc 93.6 0.68 1.5E-05 43.3 10.2 51 76-128 8-58 (260)
85 PF01370 Epimerase: NAD depend 93.5 0.09 1.9E-06 47.9 4.1 38 79-118 1-38 (236)
86 PRK06057 short chain dehydroge 93.5 0.72 1.6E-05 43.3 10.2 62 76-142 7-68 (255)
87 PLN02583 cinnamoyl-CoA reducta 93.4 0.45 9.8E-06 46.4 9.1 34 75-110 5-38 (297)
88 PRK05717 oxidoreductase; Valid 93.4 0.84 1.8E-05 42.8 10.6 48 76-127 10-57 (255)
89 PRK09987 dTDP-4-dehydrorhamnos 93.4 0.21 4.5E-06 48.9 6.7 50 78-130 2-59 (299)
90 PRK08265 short chain dehydroge 93.4 0.82 1.8E-05 43.3 10.5 64 76-143 6-70 (261)
91 PRK06196 oxidoreductase; Provi 93.3 0.76 1.7E-05 45.1 10.6 45 76-124 26-70 (315)
92 PRK07201 short chain dehydroge 93.3 0.44 9.5E-06 51.2 9.5 47 78-124 2-48 (657)
93 PRK08226 short chain dehydroge 93.3 0.82 1.8E-05 42.9 10.2 66 76-143 6-72 (263)
94 PRK12939 short chain dehydroge 93.3 1 2.2E-05 41.5 10.7 45 76-124 7-51 (250)
95 PLN03209 translocon at the inn 93.3 0.85 1.8E-05 50.4 11.7 45 74-122 78-122 (576)
96 COG1086 Predicted nucleoside-d 93.2 0.34 7.4E-06 53.3 8.6 112 76-192 250-367 (588)
97 PRK06598 aspartate-semialdehyd 93.2 0.17 3.6E-06 52.9 6.0 33 76-109 1-36 (369)
98 PRK08642 fabG 3-ketoacyl-(acyl 93.2 1.2 2.7E-05 41.1 11.2 64 77-143 6-70 (253)
99 COG1712 Predicted dinucleotide 93.2 0.5 1.1E-05 47.1 8.9 135 78-251 2-144 (255)
100 PRK08643 acetoin reductase; Va 93.2 0.94 2E-05 42.3 10.5 44 76-123 2-45 (256)
101 PRK13301 putative L-aspartate 93.2 0.58 1.3E-05 47.1 9.5 139 76-254 2-149 (267)
102 PRK08628 short chain dehydroge 93.1 0.85 1.8E-05 42.6 10.1 83 77-176 8-91 (258)
103 cd05294 LDH-like_MDH_nadp A la 93.1 0.23 5E-06 50.0 6.7 49 77-125 1-49 (309)
104 PRK14874 aspartate-semialdehyd 93.1 0.13 2.9E-06 52.1 5.0 38 76-114 1-40 (334)
105 PLN00141 Tic62-NAD(P)-related 93.1 0.49 1.1E-05 44.8 8.6 39 75-117 16-54 (251)
106 PRK12743 oxidoreductase; Provi 93.0 0.75 1.6E-05 43.2 9.6 64 76-142 2-69 (256)
107 COG1091 RfbD dTDP-4-dehydrorha 93.0 0.22 4.7E-06 50.4 6.3 52 76-131 1-56 (281)
108 PRK06180 short chain dehydroge 93.0 1.1 2.4E-05 42.8 10.9 50 76-129 4-53 (277)
109 PRK06181 short chain dehydroge 93.0 1 2.2E-05 42.3 10.4 41 76-120 1-41 (263)
110 PRK15181 Vi polysaccharide bio 93.0 0.14 3E-06 51.1 4.8 35 74-110 13-47 (348)
111 PRK07774 short chain dehydroge 92.9 1 2.2E-05 41.7 10.2 64 77-142 7-72 (250)
112 PLN02260 probable rhamnose bio 92.9 0.36 7.7E-06 52.7 8.3 35 76-110 6-40 (668)
113 COG0604 Qor NADPH:quinone redu 92.9 0.76 1.7E-05 46.5 10.1 95 76-196 143-238 (326)
114 PRK06182 short chain dehydroge 92.8 1.1 2.4E-05 42.5 10.6 41 76-120 3-43 (273)
115 PRK07035 short chain dehydroge 92.8 1 2.2E-05 41.9 10.2 43 77-123 9-51 (252)
116 PRK06194 hypothetical protein; 92.8 1.2 2.7E-05 42.4 10.9 63 76-142 6-72 (287)
117 PRK07067 sorbitol dehydrogenas 92.7 1.4 3E-05 41.3 11.0 50 76-129 6-55 (257)
118 PLN02383 aspartate semialdehyd 92.7 0.18 3.8E-06 51.9 5.4 40 76-116 7-48 (344)
119 PRK06200 2,3-dihydroxy-2,3-dih 92.7 1.1 2.5E-05 42.1 10.5 47 76-126 6-52 (263)
120 PRK08278 short chain dehydroge 92.7 1.3 2.9E-05 42.4 11.0 32 76-109 6-37 (273)
121 PRK08993 2-deoxy-D-gluconate 3 92.7 1.2 2.6E-05 41.9 10.5 83 76-176 10-93 (253)
122 PRK06138 short chain dehydroge 92.7 1.4 3.1E-05 40.7 10.8 45 76-124 5-49 (252)
123 PRK08589 short chain dehydroge 92.7 1 2.3E-05 43.0 10.2 43 76-123 6-48 (272)
124 COG0300 DltE Short-chain dehyd 92.7 0.59 1.3E-05 46.9 8.7 51 74-128 4-54 (265)
125 PRK11908 NAD-dependent epimera 92.6 0.16 3.4E-06 50.3 4.7 33 76-109 1-33 (347)
126 PRK12826 3-ketoacyl-(acyl-carr 92.6 1.2 2.6E-05 40.9 10.2 44 76-123 6-49 (251)
127 PRK05671 aspartate-semialdehyd 92.6 0.19 4E-06 51.6 5.3 38 76-114 4-43 (336)
128 PRK09880 L-idonate 5-dehydroge 92.6 1.1 2.3E-05 44.4 10.5 95 76-198 170-265 (343)
129 PLN02240 UDP-glucose 4-epimera 92.5 0.55 1.2E-05 46.1 8.3 32 76-109 5-36 (352)
130 PRK12827 short chain dehydroge 92.5 1.2 2.6E-05 40.8 10.0 47 76-124 6-54 (249)
131 PF01113 DapB_N: Dihydrodipico 92.5 0.38 8.2E-06 42.0 6.4 35 78-113 2-36 (124)
132 TIGR03325 BphB_TodD cis-2,3-di 92.5 1.2 2.7E-05 42.0 10.3 45 76-124 5-49 (262)
133 PRK07102 short chain dehydroge 92.5 0.82 1.8E-05 42.4 9.0 43 76-122 1-43 (243)
134 PRK07814 short chain dehydroge 92.4 1.4 3E-05 41.8 10.6 32 76-109 10-41 (263)
135 PRK05565 fabG 3-ketoacyl-(acyl 92.4 1.3 2.8E-05 40.6 10.1 45 75-122 4-48 (247)
136 COG2910 Putative NADH-flavin r 92.4 1 2.2E-05 43.9 9.6 96 77-208 1-106 (211)
137 PRK12936 3-ketoacyl-(acyl-carr 92.4 1.7 3.6E-05 39.9 10.8 47 76-126 6-52 (245)
138 TIGR01963 PHB_DH 3-hydroxybuty 92.3 1.1 2.5E-05 41.3 9.7 64 76-143 1-68 (255)
139 PRK09730 putative NAD(P)-bindi 92.3 1.1 2.4E-05 41.2 9.5 45 76-123 1-45 (247)
140 PLN02260 probable rhamnose bio 92.3 0.37 8.1E-06 52.6 7.5 52 77-130 381-433 (668)
141 PRK10217 dTDP-glucose 4,6-dehy 92.3 0.39 8.4E-06 47.4 6.9 33 76-110 1-33 (355)
142 PLN02572 UDP-sulfoquinovose sy 92.3 0.6 1.3E-05 49.0 8.7 33 75-109 46-78 (442)
143 PRK09135 pteridine reductase; 92.3 1.4 3E-05 40.4 10.2 41 77-120 7-47 (249)
144 PRK09072 short chain dehydroge 92.2 1.9 4.1E-05 40.6 11.2 44 76-123 5-48 (263)
145 PRK06949 short chain dehydroge 92.2 2.1 4.5E-05 39.8 11.3 43 76-122 9-51 (258)
146 PRK09134 short chain dehydroge 92.2 1.2 2.5E-05 41.9 9.7 83 76-176 9-95 (258)
147 COG4221 Short-chain alcohol de 92.2 1.3 2.7E-05 44.3 10.3 62 77-142 7-70 (246)
148 PLN02427 UDP-apiose/xylose syn 92.1 0.23 4.9E-06 50.1 5.2 37 72-109 10-46 (386)
149 PRK12744 short chain dehydroge 92.1 1.8 3.8E-05 40.7 10.8 83 77-176 9-97 (257)
150 PRK07890 short chain dehydroge 92.0 1.3 2.8E-05 41.2 9.7 43 76-122 5-47 (258)
151 TIGR01472 gmd GDP-mannose 4,6- 91.9 0.51 1.1E-05 46.6 7.3 32 77-110 1-32 (343)
152 PRK06172 short chain dehydroge 91.9 1.7 3.7E-05 40.5 10.4 49 76-128 7-58 (253)
153 PRK06500 short chain dehydroge 91.9 1.2 2.6E-05 41.1 9.2 49 76-128 6-54 (249)
154 PRK12935 acetoacetyl-CoA reduc 91.9 1.7 3.7E-05 40.2 10.3 85 76-179 6-94 (247)
155 PRK06924 short chain dehydroge 91.7 0.88 1.9E-05 42.2 8.2 50 76-128 1-50 (251)
156 PRK12745 3-ketoacyl-(acyl-carr 91.7 1.1 2.4E-05 41.6 8.9 42 76-120 2-43 (256)
157 PRK05867 short chain dehydroge 91.6 1.5 3.2E-05 41.2 9.7 44 77-124 10-53 (253)
158 PRK06701 short chain dehydroge 91.6 2.6 5.6E-05 41.1 11.7 64 77-142 47-113 (290)
159 PRK08416 7-alpha-hydroxysteroi 91.6 1.6 3.5E-05 41.2 10.0 46 76-124 8-53 (260)
160 PRK06128 oxidoreductase; Provi 91.6 1.8 4E-05 42.1 10.6 64 77-142 56-123 (300)
161 COG0702 Predicted nucleoside-d 91.4 0.75 1.6E-05 42.9 7.5 40 78-121 2-41 (275)
162 TIGR01532 E4PD_g-proteo D-eryt 91.4 2 4.4E-05 44.1 11.2 109 78-197 1-119 (325)
163 TIGR01921 DAP-DH diaminopimela 91.4 1.1 2.4E-05 46.2 9.3 39 76-116 3-41 (324)
164 PRK09291 short chain dehydroge 91.4 0.78 1.7E-05 42.6 7.6 50 76-127 2-52 (257)
165 PRK06483 dihydromonapterin red 91.4 2 4.3E-05 39.7 10.2 62 76-142 2-63 (236)
166 TIGR03206 benzo_BadH 2-hydroxy 91.3 1.9 4E-05 39.9 9.9 40 76-119 3-42 (250)
167 PRK07904 short chain dehydroge 91.2 2.9 6.3E-05 39.8 11.4 35 74-109 6-40 (253)
168 PRK06124 gluconate 5-dehydroge 91.2 2.1 4.5E-05 40.0 10.2 44 75-122 10-53 (256)
169 PRK06914 short chain dehydroge 91.2 2.1 4.5E-05 40.7 10.3 41 76-120 3-43 (280)
170 cd05286 QOR2 Quinone oxidoredu 91.1 2.5 5.3E-05 39.5 10.6 94 76-194 137-230 (320)
171 PRK07109 short chain dehydroge 91.1 1.9 4E-05 43.3 10.4 63 76-142 8-74 (334)
172 PRK07063 short chain dehydroge 91.1 1.9 4.2E-05 40.4 9.9 45 76-124 7-51 (260)
173 PRK07074 short chain dehydroge 91.1 2.6 5.7E-05 39.4 10.7 44 76-123 2-45 (257)
174 PF00106 adh_short: short chai 91.1 2.1 4.6E-05 37.1 9.5 86 77-178 1-90 (167)
175 PRK12429 3-hydroxybutyrate deh 91.0 3.1 6.8E-05 38.4 11.1 64 76-143 4-71 (258)
176 PRK05993 short chain dehydroge 91.0 2.6 5.6E-05 40.4 10.9 41 76-120 4-44 (277)
177 cd08239 THR_DH_like L-threonin 90.9 2.3 5.1E-05 41.6 10.7 95 76-196 164-259 (339)
178 CHL00194 ycf39 Ycf39; Provisio 90.9 0.3 6.4E-06 48.1 4.5 30 78-109 2-31 (317)
179 PRK08017 oxidoreductase; Provi 90.9 1.3 2.8E-05 41.2 8.5 61 76-142 2-62 (256)
180 PRK05872 short chain dehydroge 90.9 2.3 5E-05 41.4 10.6 46 76-125 9-54 (296)
181 PRK07478 short chain dehydroge 90.9 2 4.3E-05 40.1 9.8 63 76-142 6-72 (254)
182 PRK06841 short chain dehydroge 90.9 2 4.4E-05 39.9 9.8 33 76-110 15-47 (255)
183 PLN02695 GDP-D-mannose-3',5'-e 90.9 0.32 6.8E-06 49.4 4.8 33 77-111 22-54 (370)
184 PRK07832 short chain dehydroge 90.9 2.2 4.8E-05 40.6 10.2 44 77-124 1-44 (272)
185 PRK12937 short chain dehydroge 90.9 3.5 7.6E-05 37.9 11.2 83 76-176 5-91 (245)
186 PRK07831 short chain dehydroge 90.8 3.8 8.3E-05 38.6 11.7 42 76-121 17-59 (262)
187 cd01065 NAD_bind_Shikimate_DH 90.8 1.8 4E-05 37.7 8.9 47 76-126 19-65 (155)
188 PRK09242 tropinone reductase; 90.7 2.4 5.2E-05 39.7 10.2 45 76-124 9-53 (257)
189 PRK06198 short chain dehydroge 90.7 2.1 4.6E-05 39.9 9.8 31 76-108 6-37 (260)
190 smart00846 Gp_dh_N Glyceraldeh 90.6 2.7 5.8E-05 38.4 10.1 106 78-196 2-116 (149)
191 PRK05875 short chain dehydroge 90.6 2.8 6E-05 39.7 10.6 40 77-120 8-47 (276)
192 PRK07097 gluconate 5-dehydroge 90.6 2.9 6.4E-05 39.5 10.8 64 76-143 10-77 (265)
193 cd08294 leukotriene_B4_DH_like 90.6 1.9 4.2E-05 41.4 9.6 93 76-195 144-237 (329)
194 PRK12384 sorbitol-6-phosphate 90.6 2.9 6.4E-05 39.1 10.6 32 76-109 2-33 (259)
195 PLN02725 GDP-4-keto-6-deoxyman 90.5 0.46 1E-05 45.3 5.2 49 80-130 1-54 (306)
196 PRK12938 acetyacetyl-CoA reduc 90.5 3.4 7.4E-05 38.2 10.8 83 76-176 3-89 (246)
197 PRK06077 fabG 3-ketoacyl-(acyl 90.4 2.5 5.4E-05 39.1 9.9 40 76-118 6-45 (252)
198 PRK10675 UDP-galactose-4-epime 90.4 2.3 5E-05 41.5 10.1 30 78-109 2-31 (338)
199 PRK06197 short chain dehydroge 90.4 2.2 4.7E-05 41.6 9.8 40 76-119 16-55 (306)
200 cd08293 PTGR2 Prostaglandin re 90.3 3 6.5E-05 40.7 10.8 95 77-196 156-251 (345)
201 PLN00016 RNA-binding protein; 90.3 1.1 2.4E-05 45.4 8.0 36 74-111 50-89 (378)
202 TIGR03201 dearomat_had 6-hydro 90.3 3.5 7.7E-05 40.9 11.4 104 76-197 167-270 (349)
203 cd08250 Mgc45594_like Mgc45594 90.2 2.8 6E-05 40.5 10.4 94 76-195 140-233 (329)
204 TIGR01746 Thioester-redct thio 90.2 0.75 1.6E-05 44.4 6.4 36 78-113 1-36 (367)
205 PRK08339 short chain dehydroge 90.1 3.1 6.8E-05 39.7 10.5 45 76-124 8-52 (263)
206 PRK07453 protochlorophyllide o 90.1 2.1 4.5E-05 42.1 9.6 46 75-124 5-50 (322)
207 PRK12824 acetoacetyl-CoA reduc 90.1 3.5 7.6E-05 37.8 10.5 42 76-120 2-43 (245)
208 TIGR02415 23BDH acetoin reduct 90.1 2.7 5.8E-05 39.0 9.8 31 77-109 1-31 (254)
209 PLN00112 malate dehydrogenase 90.0 1.8 4E-05 46.3 9.6 56 68-125 92-154 (444)
210 PRK05650 short chain dehydroge 89.9 3.6 7.8E-05 39.0 10.7 43 77-123 1-43 (270)
211 PLN02653 GDP-mannose 4,6-dehyd 89.9 1.1 2.3E-05 44.3 7.4 32 77-110 7-38 (340)
212 PLN02503 fatty acyl-CoA reduct 89.9 1.9 4.2E-05 47.8 10.1 40 74-113 117-157 (605)
213 TIGR00978 asd_EA aspartate-sem 89.9 0.4 8.7E-06 48.8 4.5 33 78-111 2-34 (341)
214 PRK08085 gluconate 5-dehydroge 89.9 3 6.6E-05 38.9 10.1 45 76-124 9-53 (254)
215 PRK07666 fabG 3-ketoacyl-(acyl 89.8 3.4 7.4E-05 38.1 10.3 45 76-124 7-51 (239)
216 PLN03154 putative allyl alcoho 89.8 3.3 7.2E-05 41.5 10.9 97 76-196 159-255 (348)
217 TIGR03589 PseB UDP-N-acetylglu 89.8 1.6 3.4E-05 43.4 8.5 34 76-109 4-37 (324)
218 PRK06139 short chain dehydroge 89.8 2 4.4E-05 43.2 9.4 63 76-142 7-73 (330)
219 PF02719 Polysacc_synt_2: Poly 89.7 1.4 2.9E-05 45.0 8.1 42 79-124 1-43 (293)
220 cd08238 sorbose_phosphate_red 89.7 8.1 0.00017 39.7 13.8 45 77-124 177-222 (410)
221 cd08243 quinone_oxidoreductase 89.6 2.9 6.4E-05 39.5 9.9 92 76-195 143-234 (320)
222 KOG1198 Zinc-binding oxidoredu 89.6 2.7 5.8E-05 43.4 10.3 139 72-259 154-292 (347)
223 PLN02253 xanthoxin dehydrogena 89.6 3.4 7.4E-05 39.3 10.3 45 76-124 18-62 (280)
224 PRK07576 short chain dehydroge 89.6 3.3 7.1E-05 39.4 10.2 44 76-123 9-52 (264)
225 PRK05854 short chain dehydroge 89.6 2.6 5.6E-05 41.6 9.8 42 76-121 14-55 (313)
226 PRK08340 glucose-1-dehydrogena 89.6 3.6 7.7E-05 38.8 10.3 43 78-124 2-44 (259)
227 PF00551 Formyl_trans_N: Formy 89.5 1.1 2.4E-05 41.4 6.8 55 77-131 1-56 (181)
228 PRK12746 short chain dehydroge 89.5 2.8 6.1E-05 39.0 9.5 46 76-124 6-51 (254)
229 TIGR01829 AcAcCoA_reduct aceto 89.5 4.1 8.8E-05 37.3 10.4 40 77-119 1-40 (242)
230 PRK05866 short chain dehydroge 89.5 3.2 6.8E-05 40.7 10.2 43 77-123 41-83 (293)
231 PRK06179 short chain dehydroge 89.4 2.7 5.8E-05 39.7 9.4 38 76-117 4-41 (270)
232 PRK08177 short chain dehydroge 89.4 0.89 1.9E-05 41.9 6.1 33 76-110 1-33 (225)
233 smart00859 Semialdhyde_dh Semi 89.3 0.59 1.3E-05 39.9 4.5 33 78-111 1-33 (122)
234 COG2201 CheB Chemotaxis respon 89.3 4.1 9E-05 42.6 11.3 106 77-202 2-107 (350)
235 PRK08213 gluconate 5-dehydroge 89.2 3.9 8.5E-05 38.3 10.3 43 76-122 12-54 (259)
236 PRK05786 fabG 3-ketoacyl-(acyl 89.2 4.1 8.9E-05 37.4 10.2 44 76-123 5-48 (238)
237 cd08274 MDR9 Medium chain dehy 89.2 3.5 7.6E-05 40.1 10.3 92 76-195 178-269 (350)
238 cd08289 MDR_yhfp_like Yhfp put 89.2 3.1 6.8E-05 40.0 9.8 94 76-196 147-240 (326)
239 COG1088 RfbB dTDP-D-glucose 4, 89.2 1.5 3.2E-05 45.4 7.9 52 77-131 1-56 (340)
240 PRK06463 fabG 3-ketoacyl-(acyl 89.1 4 8.8E-05 38.2 10.3 38 77-117 8-45 (255)
241 PRK13535 erythrose 4-phosphate 89.1 3.3 7.1E-05 42.9 10.5 111 77-197 2-121 (336)
242 PRK08862 short chain dehydroge 89.0 3.6 7.9E-05 38.8 9.9 63 76-142 5-71 (227)
243 PRK07775 short chain dehydroge 89.0 4.7 0.0001 38.6 10.8 42 76-121 10-51 (274)
244 TIGR03649 ergot_EASG ergot alk 88.9 0.46 1E-05 45.5 3.9 32 78-111 1-32 (285)
245 TIGR01179 galE UDP-glucose-4-e 88.8 1.2 2.6E-05 42.4 6.6 30 78-109 1-30 (328)
246 PLN02214 cinnamoyl-CoA reducta 88.8 2.1 4.5E-05 42.9 8.6 33 76-110 10-42 (342)
247 PRK08251 short chain dehydroge 88.8 4.7 0.0001 37.4 10.4 41 76-120 2-42 (248)
248 PRK06113 7-alpha-hydroxysteroi 88.8 4.5 9.8E-05 37.9 10.4 32 76-109 11-42 (255)
249 PLN02996 fatty acyl-CoA reduct 88.7 1.6 3.4E-05 46.7 8.1 36 75-110 10-46 (491)
250 PRK07023 short chain dehydroge 88.6 0.57 1.2E-05 43.5 4.2 33 76-110 1-33 (243)
251 KOG1502 Flavonol reductase/cin 88.5 1.7 3.7E-05 45.0 7.9 34 75-110 5-38 (327)
252 PLN02662 cinnamyl-alcohol dehy 88.5 0.53 1.2E-05 45.5 4.1 32 77-110 5-36 (322)
253 cd08295 double_bond_reductase_ 88.5 4.7 0.0001 39.6 10.7 94 76-195 152-247 (338)
254 TIGR01777 yfcH conserved hypot 88.5 0.47 1E-05 44.7 3.6 30 79-110 1-30 (292)
255 PRK06125 short chain dehydroge 88.4 3.9 8.5E-05 38.4 9.8 45 76-124 7-51 (259)
256 PRK06114 short chain dehydroge 88.4 6 0.00013 37.2 11.0 51 76-128 8-60 (254)
257 PRK08125 bifunctional UDP-gluc 88.3 0.58 1.2E-05 51.4 4.6 35 75-110 314-348 (660)
258 PRK08217 fabG 3-ketoacyl-(acyl 88.3 5.4 0.00012 36.7 10.4 43 77-123 6-48 (253)
259 KOG4777 Aspartate-semialdehyde 88.2 0.38 8.3E-06 48.9 2.9 31 77-108 4-35 (361)
260 TIGR01546 GAPDH-II_archae glyc 88.2 3.3 7.1E-05 42.9 9.8 100 79-193 1-100 (333)
261 TIGR03366 HpnZ_proposed putati 88.2 3.8 8.3E-05 39.5 9.7 92 77-195 122-214 (280)
262 COG0002 ArgC Acetylglutamate s 88.2 1.1 2.3E-05 46.9 6.2 96 75-194 1-96 (349)
263 cd05284 arabinose_DH_like D-ar 88.2 7.7 0.00017 37.7 11.9 97 75-196 167-263 (340)
264 PLN02896 cinnamyl-alcohol dehy 88.1 2.4 5.2E-05 42.2 8.5 31 77-109 11-41 (353)
265 PRK05876 short chain dehydroge 88.1 5.5 0.00012 38.5 10.7 45 76-124 6-50 (275)
266 PRK06123 short chain dehydroge 88.0 3.6 7.7E-05 38.1 9.1 41 77-120 3-43 (248)
267 PRK07062 short chain dehydroge 87.9 4.3 9.3E-05 38.2 9.7 42 76-121 8-49 (265)
268 PRK07985 oxidoreductase; Provi 87.7 5.5 0.00012 38.9 10.6 64 77-142 50-117 (294)
269 TIGR02825 B4_12hDH leukotriene 87.6 5.4 0.00012 38.9 10.4 94 77-196 140-234 (325)
270 PRK14982 acyl-ACP reductase; P 87.6 1.2 2.6E-05 46.2 6.1 47 76-124 155-201 (340)
271 PRK01438 murD UDP-N-acetylmura 87.5 4.2 9.1E-05 42.6 10.2 117 76-253 16-132 (480)
272 PRK07677 short chain dehydroge 87.5 5.8 0.00013 37.1 10.2 42 77-122 2-43 (252)
273 PRK07792 fabG 3-ketoacyl-(acyl 87.4 3.8 8.3E-05 40.2 9.3 54 76-131 12-67 (306)
274 TIGR01830 3oxo_ACP_reduc 3-oxo 87.3 5.9 0.00013 36.1 10.0 31 79-111 1-31 (239)
275 cd08259 Zn_ADH5 Alcohol dehydr 87.3 6.5 0.00014 37.6 10.6 89 76-194 163-251 (332)
276 TIGR00639 PurN phosphoribosylg 87.2 11 0.00024 35.7 12.0 117 77-194 1-130 (190)
277 PLN02986 cinnamyl-alcohol dehy 87.2 2.8 6.2E-05 40.9 8.3 33 76-110 5-37 (322)
278 TIGR01289 LPOR light-dependent 87.2 7.8 0.00017 38.3 11.4 46 76-124 3-48 (314)
279 PLN02206 UDP-glucuronate decar 87.1 0.73 1.6E-05 48.6 4.4 31 77-109 120-150 (442)
280 cd08231 MDR_TM0436_like Hypoth 87.0 6.2 0.00014 39.1 10.7 96 76-193 178-274 (361)
281 cd08230 glucose_DH Glucose deh 87.0 3.5 7.5E-05 41.0 8.9 91 76-194 173-264 (355)
282 PRK06484 short chain dehydroge 87.0 5.2 0.00011 41.9 10.6 63 76-142 5-68 (520)
283 PRK10309 galactitol-1-phosphat 86.9 6.6 0.00014 38.8 10.7 96 76-196 161-257 (347)
284 PLN02166 dTDP-glucose 4,6-dehy 86.9 0.84 1.8E-05 48.0 4.7 31 77-109 121-151 (436)
285 PRK08277 D-mannonate oxidoredu 86.7 6 0.00013 37.6 10.0 44 76-123 10-53 (278)
286 PRK08261 fabG 3-ketoacyl-(acyl 86.5 4.3 9.2E-05 42.0 9.5 51 77-129 211-261 (450)
287 PLN02650 dihydroflavonol-4-red 86.5 0.85 1.8E-05 45.2 4.3 33 76-110 5-37 (351)
288 TIGR01296 asd_B aspartate-semi 86.5 0.8 1.7E-05 46.9 4.2 36 78-114 1-38 (339)
289 PRK07889 enoyl-(acyl carrier p 86.5 5.9 0.00013 37.7 9.8 48 76-125 7-56 (256)
290 PRK05855 short chain dehydroge 86.3 6.5 0.00014 40.9 10.8 44 76-123 315-358 (582)
291 PRK08945 putative oxoacyl-(acy 86.3 2.6 5.6E-05 39.2 7.2 33 75-109 11-43 (247)
292 PRK12747 short chain dehydroge 86.3 5.4 0.00012 37.2 9.3 44 76-122 4-47 (252)
293 PRK08703 short chain dehydroge 86.3 1.9 4.1E-05 39.9 6.2 44 76-123 6-49 (239)
294 PF07993 NAD_binding_4: Male s 86.1 1.4 3.1E-05 41.9 5.4 41 81-121 1-41 (249)
295 TIGR02685 pter_reduc_Leis pter 86.0 6.3 0.00014 37.4 9.7 45 77-124 2-46 (267)
296 PLN00198 anthocyanidin reducta 86.0 0.99 2.1E-05 44.4 4.4 33 76-110 9-41 (338)
297 PRK05884 short chain dehydroge 85.9 5.2 0.00011 37.3 9.0 60 78-142 2-61 (223)
298 TIGR03451 mycoS_dep_FDH mycoth 85.9 5.7 0.00012 39.6 9.8 93 76-194 177-271 (358)
299 PRK08936 glucose-1-dehydrogena 85.9 5.8 0.00013 37.3 9.3 44 76-122 7-50 (261)
300 cd08290 ETR 2-enoyl thioester 85.6 7.8 0.00017 37.7 10.4 99 76-194 147-246 (341)
301 TIGR01745 asd_gamma aspartate- 85.6 0.71 1.5E-05 48.3 3.4 25 77-101 1-25 (366)
302 KOG2741 Dimeric dihydrodiol de 85.6 7.1 0.00015 41.0 10.4 153 75-256 5-165 (351)
303 cd08244 MDR_enoyl_red Possible 85.6 9.5 0.0002 36.5 10.7 93 76-194 143-236 (324)
304 PRK06953 short chain dehydroge 85.5 5.6 0.00012 36.6 8.9 39 76-118 1-39 (222)
305 PLN02989 cinnamyl-alcohol dehy 85.4 1.3 2.7E-05 43.3 4.7 33 75-109 4-36 (325)
306 PRK06484 short chain dehydroge 85.2 7.4 0.00016 40.7 10.6 64 75-142 268-332 (520)
307 PLN02780 ketoreductase/ oxidor 85.2 3.3 7.1E-05 41.4 7.7 44 77-124 54-97 (320)
308 cd08292 ETR_like_2 2-enoyl thi 85.2 7.7 0.00017 37.2 9.9 96 76-196 140-235 (324)
309 PRK07069 short chain dehydroge 85.0 7.4 0.00016 35.9 9.5 44 78-124 1-44 (251)
310 COG1086 Predicted nucleoside-d 85.0 9.2 0.0002 42.6 11.4 157 72-236 112-293 (588)
311 PRK07577 short chain dehydroge 84.9 6.3 0.00014 36.1 8.9 31 77-109 4-34 (234)
312 COG0451 WcaG Nucleoside-diphos 84.9 1.3 2.9E-05 42.1 4.6 34 78-113 2-35 (314)
313 PRK10084 dTDP-glucose 4,6 dehy 84.6 5.7 0.00012 39.2 9.0 30 78-108 2-31 (352)
314 COG3320 Putative dehydrogenase 84.4 3.9 8.5E-05 43.3 8.1 87 77-179 1-98 (382)
315 cd08264 Zn_ADH_like2 Alcohol d 84.4 7.4 0.00016 37.6 9.5 89 76-197 163-251 (325)
316 cd08268 MDR2 Medium chain dehy 84.3 10 0.00022 35.7 10.2 94 76-194 145-238 (328)
317 PLN03096 glyceraldehyde-3-phos 84.1 10 0.00023 40.3 11.1 112 77-198 61-181 (395)
318 cd08301 alcohol_DH_plants Plan 84.1 10 0.00022 37.9 10.6 93 76-192 188-281 (369)
319 PRK07417 arogenate dehydrogena 84.0 14 0.0003 36.3 11.4 29 78-109 2-30 (279)
320 PRK08220 2,3-dihydroxybenzoate 83.9 9.4 0.0002 35.4 9.7 33 76-110 8-40 (252)
321 cd05282 ETR_like 2-enoyl thioe 83.8 18 0.00039 34.5 11.8 95 75-195 138-233 (323)
322 PRK07791 short chain dehydroge 83.8 11 0.00023 36.7 10.4 32 76-109 6-37 (286)
323 PRK06079 enoyl-(acyl carrier p 83.8 9.5 0.00021 36.1 9.8 46 76-126 7-54 (252)
324 TIGR03466 HpnA hopanoid-associ 83.8 1.4 3E-05 42.4 4.2 32 77-110 1-32 (328)
325 PRK08264 short chain dehydroge 83.7 9.7 0.00021 35.0 9.6 39 76-118 6-45 (238)
326 PRK07201 short chain dehydroge 83.5 9.1 0.0002 41.2 10.7 45 76-124 371-415 (657)
327 cd08249 enoyl_reductase_like e 83.5 12 0.00027 36.8 10.8 90 76-191 155-244 (339)
328 PRK10124 putative UDP-glucose 83.3 8.2 0.00018 41.2 10.1 59 75-134 142-212 (463)
329 TIGR01831 fabG_rel 3-oxoacyl-( 83.0 8 0.00017 35.6 8.8 40 79-121 1-40 (239)
330 PLN02514 cinnamyl-alcohol dehy 83.0 11 0.00025 37.7 10.5 90 77-195 182-271 (357)
331 PRK08303 short chain dehydroge 82.9 13 0.00027 37.0 10.7 32 76-109 8-39 (305)
332 PRK12859 3-ketoacyl-(acyl-carr 82.9 9.4 0.0002 36.1 9.4 31 76-108 6-38 (256)
333 PRK11150 rfaD ADP-L-glycero-D- 82.7 1.6 3.5E-05 42.1 4.3 31 79-111 2-32 (308)
334 cd05276 p53_inducible_oxidored 82.6 16 0.00034 34.1 10.7 49 76-129 140-188 (323)
335 cd08261 Zn_ADH7 Alcohol dehydr 82.5 13 0.00029 36.2 10.5 94 76-194 160-253 (337)
336 cd08269 Zn_ADH9 Alcohol dehydr 82.5 8.8 0.00019 36.5 9.0 94 76-195 130-225 (312)
337 PRK08324 short chain dehydroge 82.4 11 0.00023 42.0 10.9 45 77-125 423-467 (681)
338 smart00822 PKS_KR This enzymat 82.3 9.1 0.0002 32.3 8.2 24 77-100 1-24 (180)
339 PRK06940 short chain dehydroge 82.2 11 0.00025 36.2 9.8 39 77-121 3-41 (275)
340 PRK07856 short chain dehydroge 82.2 10 0.00023 35.4 9.3 32 76-109 6-37 (252)
341 TIGR02782 TrbB_P P-type conjug 82.1 9.4 0.0002 38.5 9.5 70 76-146 132-228 (299)
342 PRK12748 3-ketoacyl-(acyl-carr 81.9 17 0.00036 34.1 10.6 32 76-109 5-38 (256)
343 PLN02775 Probable dihydrodipic 81.9 5.9 0.00013 40.4 8.0 32 77-110 12-43 (286)
344 PRK10754 quinone oxidoreductas 81.9 14 0.0003 35.7 10.3 92 76-192 141-232 (327)
345 PRK05396 tdh L-threonine 3-deh 81.9 15 0.00033 36.0 10.7 97 76-197 164-261 (341)
346 PLN02586 probable cinnamyl alc 81.8 9.3 0.0002 38.5 9.4 90 77-195 185-274 (360)
347 PRK06027 purU formyltetrahydro 81.7 14 0.0003 37.3 10.5 134 72-212 85-237 (286)
348 cd08233 butanediol_DH_like (2R 81.5 8.6 0.00019 37.9 8.9 93 76-194 173-267 (351)
349 TIGR03025 EPS_sugtrans exopoly 81.2 12 0.00027 39.0 10.3 60 75-135 124-198 (445)
350 cd05278 FDH_like Formaldehyde 81.1 14 0.00031 35.9 10.2 96 76-196 168-264 (347)
351 COG3268 Uncharacterized conser 81.1 10 0.00022 40.1 9.4 157 75-259 5-177 (382)
352 cd05288 PGDH Prostaglandin deh 80.9 14 0.0003 35.6 9.9 94 76-195 146-240 (329)
353 TIGR01751 crot-CoA-red crotony 80.9 19 0.00041 36.6 11.3 114 76-195 190-306 (398)
354 cd08246 crotonyl_coA_red croto 80.8 16 0.00035 36.8 10.8 110 77-194 195-310 (393)
355 PF13380 CoA_binding_2: CoA bi 80.7 4.3 9.4E-05 35.3 5.8 30 77-108 1-33 (116)
356 cd08284 FDH_like_2 Glutathione 80.6 15 0.00033 35.7 10.2 93 76-194 168-261 (344)
357 cd08297 CAD3 Cinnamyl alcohol 80.6 21 0.00046 34.8 11.2 96 76-196 166-262 (341)
358 cd08300 alcohol_DH_class_III c 80.6 21 0.00045 35.9 11.4 92 76-191 187-279 (368)
359 cd08281 liver_ADH_like1 Zinc-d 80.5 11 0.00023 37.9 9.3 93 77-195 193-286 (371)
360 cd05285 sorbitol_DH Sorbitol d 80.5 18 0.00039 35.6 10.7 98 76-195 163-261 (343)
361 PLN02178 cinnamyl-alcohol dehy 80.5 14 0.0003 37.8 10.2 91 76-195 179-269 (375)
362 PRK06720 hypothetical protein; 80.4 21 0.00044 32.9 10.4 64 76-142 16-82 (169)
363 PLN02686 cinnamoyl-CoA reducta 80.3 2.4 5.2E-05 43.1 4.7 34 74-109 51-84 (367)
364 PF01073 3Beta_HSD: 3-beta hyd 80.3 4.2 9E-05 40.2 6.2 36 80-115 1-36 (280)
365 cd08252 AL_MDR Arginate lyase 79.8 18 0.0004 34.9 10.4 96 76-196 150-245 (336)
366 PRK11199 tyrA bifunctional cho 79.4 24 0.00053 36.5 11.7 135 75-228 97-244 (374)
367 PF01488 Shikimate_DH: Shikima 79.1 11 0.00024 33.3 7.9 46 76-125 12-57 (135)
368 cd08296 CAD_like Cinnamyl alco 79.1 20 0.00043 35.2 10.5 91 76-194 164-254 (333)
369 cd08235 iditol_2_DH_like L-idi 79.1 17 0.00037 35.4 9.9 95 76-195 166-261 (343)
370 TIGR02823 oxido_YhdH putative 78.9 20 0.00044 34.5 10.3 91 78-196 148-238 (323)
371 cd01075 NAD_bind_Leu_Phe_Val_D 78.8 12 0.00026 35.4 8.6 43 77-124 29-71 (200)
372 cd08256 Zn_ADH2 Alcohol dehydr 78.8 17 0.00037 35.8 10.0 94 77-195 176-270 (350)
373 PRK13894 conjugal transfer ATP 78.7 13 0.00028 38.0 9.3 72 75-147 147-244 (319)
374 PRK13011 formyltetrahydrofolat 78.6 22 0.00047 36.0 10.7 131 74-212 87-237 (286)
375 cd02072 Glm_B12_BD B12 binding 78.5 12 0.00026 33.9 8.0 46 87-133 13-58 (128)
376 TIGR03443 alpha_am_amid L-amin 78.5 5.3 0.00011 47.0 7.3 40 74-113 969-1010(1389)
377 PRK07424 bifunctional sterol d 78.5 11 0.00023 40.0 8.8 41 76-120 178-218 (406)
378 TIGR00655 PurU formyltetrahydr 78.4 19 0.00042 36.3 10.3 132 74-212 82-232 (280)
379 PRK06997 enoyl-(acyl carrier p 78.2 17 0.00037 34.7 9.5 65 77-143 7-74 (260)
380 cd05280 MDR_yhdh_yhfp Yhdh and 78.1 25 0.00055 33.5 10.7 90 77-193 148-237 (325)
381 PRK07370 enoyl-(acyl carrier p 78.1 19 0.00041 34.3 9.8 66 76-143 6-77 (258)
382 PLN02256 arogenate dehydrogena 77.9 26 0.00057 35.5 11.2 34 75-111 35-68 (304)
383 TIGR02632 RhaD_aldol-ADH rhamn 77.8 14 0.00031 41.2 10.1 45 76-124 414-458 (676)
384 PLN02358 glyceraldehyde-3-phos 77.7 10 0.00022 39.3 8.3 113 76-198 5-126 (338)
385 PRK05472 redox-sensing transcr 77.7 14 0.0003 35.1 8.6 64 71-135 79-156 (213)
386 PRK13656 trans-2-enoyl-CoA red 77.7 22 0.00047 38.0 10.9 105 73-196 38-170 (398)
387 cd05188 MDR Medium chain reduc 77.5 21 0.00046 32.7 9.6 93 76-194 135-227 (271)
388 PRK08306 dipicolinate synthase 77.5 16 0.00035 36.7 9.5 44 76-125 152-195 (296)
389 cd08258 Zn_ADH4 Alcohol dehydr 77.5 21 0.00045 34.9 10.0 96 76-196 165-261 (306)
390 cd08241 QOR1 Quinone oxidoredu 77.3 19 0.0004 33.8 9.3 92 76-192 140-231 (323)
391 TIGR02817 adh_fam_1 zinc-bindi 77.2 31 0.00068 33.4 11.1 96 76-196 149-244 (336)
392 TIGR00715 precor6x_red precorr 76.9 6.8 0.00015 38.9 6.5 77 78-181 2-78 (256)
393 COG0057 GapA Glyceraldehyde-3- 76.9 25 0.00055 36.8 10.8 113 77-197 2-120 (335)
394 PRK13900 type IV secretion sys 76.9 16 0.00036 37.5 9.5 71 75-146 159-259 (332)
395 PRK05599 hypothetical protein; 76.8 24 0.00052 33.3 9.9 43 77-124 1-43 (246)
396 cd01336 MDH_cytoplasmic_cytoso 76.8 2.2 4.9E-05 43.4 3.2 43 76-118 2-49 (325)
397 PRK08118 topology modulation p 76.7 1.6 3.4E-05 40.0 1.9 19 76-95 1-19 (167)
398 TIGR02819 fdhA_non_GSH formald 76.7 21 0.00046 36.8 10.3 95 77-196 187-296 (393)
399 PRK06217 hypothetical protein; 76.6 1.6 3.5E-05 39.9 2.0 19 76-95 1-19 (183)
400 PRK08159 enoyl-(acyl carrier p 76.6 24 0.00053 34.0 10.2 63 77-142 11-77 (272)
401 PRK07533 enoyl-(acyl carrier p 76.4 28 0.00062 33.0 10.4 63 77-142 11-77 (258)
402 PRK07041 short chain dehydroge 75.9 22 0.00048 32.5 9.2 41 80-124 1-41 (230)
403 TIGR02818 adh_III_F_hyde S-(hy 75.8 30 0.00064 34.9 10.9 92 76-191 186-278 (368)
404 cd02071 MM_CoA_mut_B12_BD meth 75.7 30 0.00065 30.0 9.5 45 88-133 14-58 (122)
405 KOG2733 Uncharacterized membra 75.6 3.9 8.4E-05 43.5 4.6 46 78-124 7-53 (423)
406 PRK13771 putative alcohol dehy 75.6 21 0.00046 34.6 9.5 89 76-195 163-251 (334)
407 PRK07578 short chain dehydroge 75.6 10 0.00023 34.2 6.9 29 78-109 2-30 (199)
408 TIGR01501 MthylAspMutase methy 75.5 23 0.0005 32.2 9.0 53 80-133 4-60 (134)
409 PRK08690 enoyl-(acyl carrier p 75.4 20 0.00043 34.2 9.1 84 76-176 6-92 (261)
410 PRK02261 methylaspartate mutas 75.2 27 0.00059 31.5 9.4 53 80-133 6-62 (137)
411 cd08285 NADP_ADH NADP(H)-depen 74.9 27 0.00058 34.5 10.1 95 76-195 167-262 (351)
412 COG0289 DapB Dihydrodipicolina 74.8 10 0.00022 38.5 7.1 40 76-116 2-41 (266)
413 cd08278 benzyl_alcohol_DH Benz 74.7 28 0.00061 34.9 10.4 92 77-194 188-280 (365)
414 TIGR02197 heptose_epim ADP-L-g 74.7 4.2 9.1E-05 39.0 4.3 31 79-110 1-31 (314)
415 PRK08309 short chain dehydroge 74.5 65 0.0014 30.0 12.0 62 78-144 2-66 (177)
416 cd08291 ETR_like_1 2-enoyl thi 74.3 27 0.00058 34.1 9.9 90 77-192 144-235 (324)
417 TIGR02130 dapB_plant dihydrodi 74.2 11 0.00024 38.3 7.3 29 78-108 2-30 (275)
418 TIGR03023 WcaJ_sugtrans Undeca 74.2 24 0.00052 36.9 10.1 60 75-135 127-201 (451)
419 PRK08955 glyceraldehyde-3-phos 73.8 34 0.00073 35.6 10.8 108 77-197 3-118 (334)
420 cd08253 zeta_crystallin Zeta-c 73.8 29 0.00063 32.5 9.6 51 75-130 144-194 (325)
421 smart00829 PKS_ER Enoylreducta 73.7 33 0.00072 31.4 9.8 45 77-126 106-150 (288)
422 KOG1203 Predicted dehydrogenas 73.5 9.1 0.0002 40.9 6.8 37 71-109 74-110 (411)
423 PLN02740 Alcohol dehydrogenase 73.5 29 0.00063 35.1 10.2 92 76-191 199-291 (381)
424 cd08248 RTN4I1 Human Reticulon 73.5 35 0.00076 33.2 10.4 90 76-194 163-252 (350)
425 PF06506 PrpR_N: Propionate ca 73.4 12 0.00026 34.5 6.9 71 156-236 91-161 (176)
426 cd08254 hydroxyacyl_CoA_DH 6-h 73.0 40 0.00086 32.4 10.6 92 77-194 167-258 (338)
427 PRK01222 N-(5'-phosphoribosyl) 72.8 63 0.0014 31.1 11.8 117 84-208 35-163 (210)
428 PTZ00354 alcohol dehydrogenase 72.8 40 0.00086 32.3 10.5 96 77-196 142-237 (334)
429 PRK06849 hypothetical protein; 72.5 37 0.0008 34.7 10.8 36 75-112 3-38 (389)
430 PLN02827 Alcohol dehydrogenase 72.1 35 0.00076 34.7 10.5 93 76-192 194-287 (378)
431 PF01935 DUF87: Domain of unkn 72.0 2.3 4.9E-05 39.9 1.8 36 76-112 23-62 (229)
432 PRK07634 pyrroline-5-carboxyla 71.8 13 0.00027 35.2 6.7 48 77-125 5-53 (245)
433 cd08260 Zn_ADH6 Alcohol dehydr 71.7 43 0.00093 32.8 10.6 95 75-194 165-259 (345)
434 PRK09310 aroDE bifunctional 3- 71.5 28 0.00062 37.4 10.0 45 76-125 332-376 (477)
435 PF07287 DUF1446: Protein of u 71.5 17 0.00037 38.2 8.2 100 91-199 62-167 (362)
436 cd08288 MDR_yhdh Yhdh putative 71.4 40 0.00086 32.4 10.1 50 76-130 147-196 (324)
437 TIGR01202 bchC 2-desacetyl-2-h 71.3 18 0.0004 35.5 8.0 83 77-196 146-228 (308)
438 PRK12367 short chain dehydroge 71.2 22 0.00047 34.2 8.3 32 76-109 14-45 (245)
439 PRK08415 enoyl-(acyl carrier p 71.1 45 0.00098 32.4 10.6 62 77-142 6-72 (274)
440 TIGR01757 Malate-DH_plant mala 71.1 7.7 0.00017 41.0 5.6 57 68-125 36-98 (387)
441 PRK07261 topology modulation p 70.8 2.6 5.6E-05 38.6 1.8 18 77-95 1-18 (171)
442 cd08277 liver_alcohol_DH_like 70.5 34 0.00074 34.3 9.8 91 77-191 186-277 (365)
443 cd02070 corrinoid_protein_B12- 70.5 30 0.00065 32.6 8.9 91 80-171 85-187 (201)
444 PF02310 B12-binding: B12 bind 70.0 32 0.0007 28.7 8.2 88 87-175 14-111 (121)
445 cd06578 HemD Uroporphyrinogen- 70.0 38 0.00082 31.0 9.3 141 87-233 83-237 (239)
446 cd05213 NAD_bind_Glutamyl_tRNA 69.9 29 0.00063 34.9 9.2 47 76-126 178-224 (311)
447 PRK09189 uroporphyrinogen-III 69.5 80 0.0017 30.1 11.7 145 87-236 80-238 (240)
448 TIGR03022 WbaP_sugtrans Undeca 69.4 22 0.00047 37.3 8.5 58 75-134 124-197 (456)
449 cd08263 Zn_ADH10 Alcohol dehyd 69.2 48 0.001 33.1 10.5 97 77-198 189-287 (367)
450 PRK06505 enoyl-(acyl carrier p 69.2 44 0.00095 32.3 10.0 30 77-108 8-39 (271)
451 cd02067 B12-binding B12 bindin 68.9 28 0.0006 29.6 7.6 46 87-133 13-58 (119)
452 PRK09009 C factor cell-cell si 68.7 7.5 0.00016 35.8 4.4 32 77-108 1-32 (235)
453 cd08242 MDR_like Medium chain 68.5 39 0.00084 32.6 9.5 86 77-196 157-242 (319)
454 PRK05086 malate dehydrogenase; 68.4 7.2 0.00016 39.5 4.6 33 77-109 1-34 (312)
455 PRK06603 enoyl-(acyl carrier p 68.2 38 0.00083 32.2 9.3 31 76-108 8-40 (260)
456 cd08262 Zn_ADH8 Alcohol dehydr 68.2 69 0.0015 31.2 11.2 94 77-192 163-257 (341)
457 PRK07984 enoyl-(acyl carrier p 68.1 52 0.0011 31.7 10.2 30 76-107 6-37 (262)
458 cd01338 MDH_choloroplast_like 68.0 5 0.00011 41.0 3.3 50 75-124 1-55 (322)
459 PRK04663 murD UDP-N-acetylmura 67.9 32 0.00069 36.0 9.3 107 72-187 3-124 (438)
460 COG1064 AdhP Zn-dependent alco 67.9 45 0.00097 34.9 10.2 90 76-197 167-257 (339)
461 KOG1221 Acyl-CoA reductase [Li 67.8 27 0.00058 38.1 8.9 34 76-109 12-46 (467)
462 cd01076 NAD_bind_1_Glu_DH NAD( 67.5 17 0.00037 35.4 6.7 47 75-124 30-85 (227)
463 cd01130 VirB11-like_ATPase Typ 67.2 20 0.00044 32.9 6.9 17 76-93 25-41 (186)
464 cd05289 MDR_like_2 alcohol deh 67.1 50 0.0011 30.8 9.6 88 76-193 145-232 (309)
465 cd08298 CAD2 Cinnamyl alcohol 67.0 47 0.001 32.1 9.7 87 77-198 169-255 (329)
466 smart00382 AAA ATPases associa 67.0 20 0.00043 28.6 6.0 35 77-112 3-40 (148)
467 TIGR01915 npdG NADPH-dependent 67.0 15 0.00032 34.8 6.1 42 78-123 2-43 (219)
468 TIGR01035 hemA glutamyl-tRNA r 66.8 26 0.00057 36.8 8.5 47 76-126 180-226 (417)
469 PTZ00325 malate dehydrogenase; 66.7 10 0.00022 39.0 5.2 37 72-108 4-40 (321)
470 TIGR00518 alaDH alanine dehydr 66.7 37 0.0008 35.3 9.4 45 76-125 167-211 (370)
471 PF00625 Guanylate_kin: Guanyl 66.6 7.7 0.00017 35.4 4.0 32 76-108 2-35 (183)
472 PRK06523 short chain dehydroge 66.6 8.1 0.00018 36.1 4.3 31 77-109 10-40 (260)
473 PLN02702 L-idonate 5-dehydroge 66.6 78 0.0017 31.5 11.4 97 77-195 183-281 (364)
474 KOG0455 Homoserine dehydrogena 66.5 22 0.00049 36.5 7.5 114 78-206 5-126 (364)
475 TIGR01019 sucCoAalpha succinyl 66.5 45 0.00097 33.9 9.7 28 75-102 5-32 (286)
476 PRK06223 malate dehydrogenase; 66.4 12 0.00026 37.0 5.6 42 76-121 2-43 (307)
477 KOG2862 Alanine-glyoxylate ami 66.2 32 0.0007 36.3 8.7 58 76-133 91-150 (385)
478 PRK08594 enoyl-(acyl carrier p 66.1 64 0.0014 30.7 10.3 48 76-125 7-57 (257)
479 cd05291 HicDH_like L-2-hydroxy 65.5 43 0.00094 33.5 9.4 45 77-124 1-45 (306)
480 COG4565 CitB Response regulato 65.4 35 0.00076 34.0 8.4 75 94-192 18-96 (224)
481 TIGR01500 sepiapter_red sepiap 65.4 27 0.00058 32.9 7.5 45 78-124 2-48 (256)
482 PRK12320 hypothetical protein; 65.3 7.9 0.00017 43.9 4.5 30 78-109 2-31 (699)
483 KOG4354 N-acetyl-gamma-glutamy 65.3 9.8 0.00021 38.8 4.7 67 268-338 216-290 (340)
484 PRK10083 putative oxidoreducta 65.2 62 0.0013 31.5 10.2 95 77-197 162-257 (339)
485 TIGR03013 EpsB_2 sugar transfe 65.1 57 0.0012 34.4 10.6 59 76-135 124-196 (442)
486 cd08266 Zn_ADH_like1 Alcohol d 65.1 1.3E+02 0.0028 28.6 13.5 93 76-194 167-260 (342)
487 TIGR00640 acid_CoA_mut_C methy 64.8 72 0.0016 28.6 9.7 86 87-174 16-111 (132)
488 PF10662 PduV-EutP: Ethanolami 64.6 4.3 9.2E-05 37.4 1.9 97 76-202 1-100 (143)
489 PRK08419 lipid A biosynthesis 64.6 42 0.00092 33.2 9.0 103 104-226 114-231 (298)
490 cd08265 Zn_ADH3 Alcohol dehydr 64.4 74 0.0016 32.2 10.9 98 77-196 205-304 (384)
491 cd08272 MDR6 Medium chain dehy 64.3 81 0.0018 29.7 10.5 91 76-193 145-235 (326)
492 PRK08618 ornithine cyclodeamin 64.3 56 0.0012 33.1 10.0 33 160-196 186-218 (325)
493 PF00437 T2SE: Type II/IV secr 64.2 24 0.00052 34.0 7.1 70 76-146 127-221 (270)
494 PF02602 HEM4: Uroporphyrinoge 64.2 23 0.00049 32.9 6.7 128 87-220 78-216 (231)
495 PF03807 F420_oxidored: NADP o 64.2 19 0.00041 29.0 5.5 49 78-128 1-50 (96)
496 PLN02828 formyltetrahydrofolat 64.2 64 0.0014 32.6 10.2 142 74-229 68-229 (268)
497 PLN02640 glucose-6-phosphate 1 63.8 11 0.00024 41.9 5.2 55 70-124 82-144 (573)
498 PF00056 Ldh_1_N: lactate/mala 63.8 27 0.00059 31.2 6.9 45 78-124 2-46 (141)
499 cd08236 sugar_DH NAD(P)-depend 63.8 75 0.0016 31.0 10.5 92 77-194 161-253 (343)
500 COG1087 GalE UDP-glucose 4-epi 63.7 36 0.00078 35.6 8.5 32 77-110 1-32 (329)
No 1
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=100.00 E-value=5.5e-161 Score=1235.12 Aligned_cols=405 Identities=82% Similarity=1.284 Sum_probs=386.9
Q ss_pred CCCCCCCcccccccccccccCceeeeec-----CCCCCCCCCccccccccCCCCCCeeEEEEecCChHhHHHHHHHHhCC
Q 013846 26 LPKLSGGFPLKRKDNATATFGRIVQCSA-----QGPPPAWPGRAVTETFRKTWDGPKPISVLGSTGSIGTQTLDIVAEHE 100 (435)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~k~I~IlGSTGSIG~qtLdVi~~~p 100 (435)
+++++|+...++++. ....++|++|+. +.|+++||+++..++..+.|+++|||+|||||||||+||||||++||
T Consensus 3 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KkI~ILGSTGSIGtqtLdVI~~~p 81 (454)
T PLN02696 3 LPKLPGGFTTKRSSS-RQSRGRRAKCSVAGWSQNSPPPAWPGRAVVEPGRKGWDGPKPISLLGSTGSIGTQTLDIVAENP 81 (454)
T ss_pred cccCCCcceeccccc-cccccccccccccccccCCCCccCccccccCCcccccCCccEEEEecCCcHhhHHHHHHHHhCc
Confidence 358899999999998 777889999994 45789999999877778999999999999999999999999999999
Q ss_pred CceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEEechhHHHHHhcCCCCCEEEEeccccc
Q 013846 101 DKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCA 180 (435)
Q Consensus 101 d~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~~G~egl~~l~~~~~~D~Vv~AIvG~a 180 (435)
|+|+|++|++|+|+++|++|+++|+|++|++.|++.+.+|++.|.+.+.+++++.|++|++++++.+++|+||+||+|++
T Consensus 82 d~f~vvaLaag~Ni~lL~~q~~~f~p~~v~v~d~~~~~~l~~~l~~~~~~~~vl~G~egl~~la~~~evDiVV~AIvG~a 161 (454)
T PLN02696 82 DKFKVVALAAGSNVTLLADQVRKFKPKLVAVRNESLVDELKEALADLDDKPEIIPGEEGIVEVARHPEAVTVVTGIVGCA 161 (454)
T ss_pred cccEEEEEECCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhcCCCCCcEEEECHHHHHHHHcCCCCCEEEEeCcccc
Confidence 99999999999999999999999999999999999999999988532235789999999999999999999999999999
Q ss_pred CcHHHHHHHHcCCceeecccceeeeccccchHHhhhcCCeEeecccchhhHHHhhcCCCCCccceEEEEeeCCCCCCCCh
Q 013846 181 GLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPV 260 (435)
Q Consensus 181 GL~pt~~Ai~~gK~iaLANKESLV~aG~lv~~~a~~~~~~IiPVDSEHsAIfQ~L~g~~~~~v~kIiLTASGGPFr~~~~ 260 (435)
||.||++||++||+|||||||||||||++|+++++++|++|+|||||||||||||+|+++++|+||||||||||||+||+
T Consensus 162 GL~pTl~AIkaGK~VALANKESLV~aG~lI~~~ak~~~~~IlPVDSEHsAIfQ~L~g~~~~~v~kiiLTASGGpFr~~~~ 241 (454)
T PLN02696 162 GLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAKKHGVKILPADSEHSAIFQCIQGLPEGGLRRIILTASGGAFRDWPV 241 (454)
T ss_pred chHHHHHHHHCCCcEEEecHHHHHhhHHHHHHHHHHcCCeEeecchhhHHHHHHccCCCccCccEEEEECCchhccCCCH
Confidence 99999999999999999999999999999999999999999999999999999999987778999999999999999999
Q ss_pred hhhccCCHHHHhcCCCCCCCcccccchhhhhhhhHhHhHhhhhcCCCCCceEEEEcCCcceeEEEEecCCcEEEecCCCC
Q 013846 261 EKLKEVKVADALKHPNWSMGKKITVDSATLFNKGLEVIEAHYLFGAEYDNIEIIIHPQSIIHSMVETQDSSVIGQLGWPD 340 (435)
Q Consensus 261 e~L~~vT~~dALkHP~W~MG~KITIDSATmmNKgLEvIEA~~LF~i~~d~I~vvIHPqSiIHsmVef~DGSv~Aqls~PD 340 (435)
|+|++||++|||+||||+||+||||||||||||||||||||||||+|||+|||||||||||||||||+|||++||||+||
T Consensus 242 e~l~~vT~~~ALkHP~W~MG~KITIDSATmmNKglEvIEA~~LF~~~~d~I~vvIHPqSiIHsmVef~DGS~~Aql~~pD 321 (454)
T PLN02696 242 EKLKEVKVADALKHPNWSMGKKITVDSATLMNKGLEVIEAHYLFGADYDDIDIVIHPQSIIHSMVETQDSSVLAQLGWPD 321 (454)
T ss_pred HHHhCCCHHHHhhCCCCcCCCeeeeehHhhhhhhHHHHHHHHHcCCCHHHeEEEECcCCeeeEEEEEcCCcEEEEecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHhcccCCCccccCCCCCCCCCCCCCCCceecCCCCCCCchHHHHHHHHHcCCCceeeeecchHHHHHHHHhCCCC
Q 013846 341 MRLPIIYTMSWPERIYCSELTWPRLDLSKLGSLTFVAPDTAKYPSVNLAYAAGRAGGTMTGVLSAANEKAVEMFIDEKYV 420 (435)
Q Consensus 341 MrlPI~yAL~yP~R~~~~~~~~~~ldl~~~~~LtF~~pD~~rFP~l~LA~~a~~~Gg~~p~vlNAANEvAV~aFL~~kI~ 420 (435)
||+||+|||+||+|.++++..+++|||.++++|||++||++|||||+|||+|+++||++|+|||||||+||++||+|||+
T Consensus 322 MrlPI~yAL~yP~R~~~~~~~~~~ldl~~~~~LtF~~pD~~rfP~l~La~~a~~~gg~~~~vlNAANEvAV~~FL~~kI~ 401 (454)
T PLN02696 322 MRLPILYTMSWPDRVPCSEITWPRLDLCKLGSLTFKAPDNVKYPSMDLAYAAGRAGGTMTGVLSAANEKAVEMFIDEKIG 401 (454)
T ss_pred cHHHHHHHcCCccccccccCCCCCcCccccCCCeeeCCChhhCcHHHHHHHHHHhCCCceEEEEhhhHHHHHHHHcCCCC
Confidence 99999999999999964336789999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHhh
Q 013846 421 SLVLIENIALL 431 (435)
Q Consensus 421 F~dI~~ii~~~ 431 (435)
|+||+++|+++
T Consensus 402 F~dI~~~i~~~ 412 (454)
T PLN02696 402 YLDIFKVIELT 412 (454)
T ss_pred chhHHHHHHHH
Confidence 99999999875
No 2
>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]
Probab=100.00 E-value=1.5e-156 Score=1171.33 Aligned_cols=349 Identities=56% Similarity=0.867 Sum_probs=342.9
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEEe
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~~ 155 (435)
||||+|||||||||+|||||+++|||+|+|+||++|+|+++|.+||++|+|++|++.|+..+..++..+. +++|+.
T Consensus 1 ~k~i~iLGSTGSIG~qtLdVi~~~p~~f~vval~ag~n~~~l~~q~~~f~P~~v~~~d~~~~~~l~~~~~----~~~v~~ 76 (385)
T COG0743 1 MKKLTILGSTGSIGTQTLDVIRRNPDKFEVVALAAGKNVELLAEQIREFKPKYVVIADESAAKELEDLLP----GTEVLV 76 (385)
T ss_pred CceEEEEecCCchhHHHHHHHHhCCCcEEEEEEecCCcHHHHHHHHHHhCCceEEecChHHHHHHHhhcc----CceEEe
Confidence 6899999999999999999999999999999999999999999999999999999999999999998874 589999
Q ss_pred chhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCceeecccceeeeccccchHHhhhcCCeEeecccchhhHHHhh
Q 013846 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 235 (435)
Q Consensus 156 G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLANKESLV~aG~lv~~~a~~~~~~IiPVDSEHsAIfQ~L 235 (435)
|++|++++++.+++|+||+||||++||.||++|+++||+||||||||||+||+++++++|++|++|+|||||||||||||
T Consensus 77 G~~~l~e~a~~~~~d~Vm~AivG~aGL~pTlaAi~aGK~iaLANKEsLV~aG~l~~~~~k~~g~~llPVDSEH~AifQ~L 156 (385)
T COG0743 77 GEEGLCELAAEDDADVVMNAIVGAAGLLPTLAAIKAGKTIALANKESLVTAGELVMDAAKESGAQLLPVDSEHNAIFQCL 156 (385)
T ss_pred cHHHHHHHHhcCCCCEEeehhhhhcccHHHHHHHHcCCceeecchhhhhcccHHHHHHHHHcCCEEeccCchhHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccceEEEEeeCCCCCCCChhhhccCCHHHHhcCCCCCCCcccccchhhhhhhhHhHhHhhhhcCCCCCceEEEE
Q 013846 236 QGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSATLFNKGLEVIEAHYLFGAEYDNIEIII 315 (435)
Q Consensus 236 ~g~~~~~v~kIiLTASGGPFr~~~~e~L~~vT~~dALkHP~W~MG~KITIDSATmmNKgLEvIEA~~LF~i~~d~I~vvI 315 (435)
+|+..++|+||||||||||||+||+++|.+|||+|||+||||+||+||||||||||||||||||||||||+|||+|||||
T Consensus 157 ~~~~~~~v~~iiLTASGGpFR~~~~~~L~~VT~eqAl~HPnWsMG~KITvDSATmmNKGLEvIEA~~LF~~~~~~IeVvI 236 (385)
T COG0743 157 QGETQKGVKKIILTASGGPFRDKSLEELANVTPEQALKHPNWSMGRKITVDSATMMNKGLEVIEAHWLFGLPYEQIEVVI 236 (385)
T ss_pred CccccCcceEEEEecCCCCcCCCCHHHHccCCHHHHhcCCCCCCCCcccccHHHHhhhhHHHHHHHHHhCCCHHHeeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceeEEEEecCCcEEEecCCCCchHHHHhcccCCCccccCCCCCCCCCCCCCCCceecCCCCCCCchHHHHHHHHHc
Q 013846 316 HPQSIIHSMVETQDSSVIGQLGWPDMRLPIIYTMSWPERIYCSELTWPRLDLSKLGSLTFVAPDTAKYPSVNLAYAAGRA 395 (435)
Q Consensus 316 HPqSiIHsmVef~DGSv~Aqls~PDMrlPI~yAL~yP~R~~~~~~~~~~ldl~~~~~LtF~~pD~~rFP~l~LA~~a~~~ 395 (435)
||||||||||||.|||++||||+||||+||+|||+||+|. +..+++|||.++++|+|++||++|||||+|||+|++.
T Consensus 237 HPQSiIHsmV~~~DGSviAqlg~pDMr~PI~yAl~~P~R~---~~~~~~ldf~~~~~L~Fe~pD~~rfp~l~LA~~a~~~ 313 (385)
T COG0743 237 HPQSIIHSMVEYVDGSVIAQLGPPDMRTPISYALAYPERV---PSAVEPLDFTKLSALTFEPPDTDRFPCLKLAYDAGEA 313 (385)
T ss_pred cccchheeeEEeccCCEEEecCCcchhhHHHHHhcCCccc---ccCccccchhhcCcceeeCCChhhcchHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999 4678889999999999999999999999999999999
Q ss_pred CCCceeeeecchHHHHHHHHhCCCCcccHHHHHHhh
Q 013846 396 GGTMTGVLSAANEKAVEMFIDEKYVSLVLIENIALL 431 (435)
Q Consensus 396 Gg~~p~vlNAANEvAV~aFL~~kI~F~dI~~ii~~~ 431 (435)
||++|+|||||||+||++||+|||+|+||+++|+++
T Consensus 314 gg~~~~vlNAANE~AV~aFL~~~I~F~dI~~iie~~ 349 (385)
T COG0743 314 GGAMPTVLNAANEVAVAAFLAGKIGFLDIARIIEKA 349 (385)
T ss_pred CCchhhhHhhhhHHHHHHHHhCCCCcccHHHHHHHH
Confidence 999999999999999999999999999999999875
No 3
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=100.00 E-value=1.3e-155 Score=1176.39 Aligned_cols=353 Identities=53% Similarity=0.818 Sum_probs=342.1
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEEe
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~~ 155 (435)
||+|+|||||||||+|||||+++|||+|+|+||+||+|+++|.+|+++|+|++|++.|++.+.+++..+.+.+.+++|+.
T Consensus 1 Mk~i~IlGsTGSIG~qtL~Vi~~~~~~f~v~~Laa~~n~~~L~~q~~~f~p~~v~i~d~~~~~~l~~~l~~~~~~~~v~~ 80 (389)
T TIGR00243 1 MKQIVILGSTGSIGKSTLDVVRHNPDHFQVVALSAGKNVALMVEQILEFRPKFVAIDDEASLKDLKTMLQQQGSRTEVLV 80 (389)
T ss_pred CceEEEEecChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHcCCCEEEEcCHHHHHHHHHHhhcCCCCcEEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999998742234578999
Q ss_pred chhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCceeecccceeeeccccchHHhhhcCCeEeecccchhhHHHhh
Q 013846 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 235 (435)
Q Consensus 156 G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLANKESLV~aG~lv~~~a~~~~~~IiPVDSEHsAIfQ~L 235 (435)
|++|++++++.+++|+||+||||++||.||++||++||+|||||||||||||++|++++++++++|+|||||||||||||
T Consensus 81 G~~~l~~l~~~~~~D~vv~AivG~aGL~pt~~Ai~~gk~iaLANKEsLV~aG~li~~~a~~~~~~I~PVDSEHsAIfQ~L 160 (389)
T TIGR00243 81 GEEGICEMAALEDVDQVMNAIVGAAGLLPTLAAIRAGKTIALANKESLVTAGHLFLDAVKKYGVQLLPVDSEHNAIFQSL 160 (389)
T ss_pred CHHHHHHHHcCCCCCEEEEhhhcHhhHHHHHHHHHCCCcEEEechhHHHhhHHHHHHHHHHcCCeEEeecchHhHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c-CCCCCccceEEEEeeCCCCCCCChhhhccCCHHHHhcCCCCCCCcccccchhhhhhhhHhHhHhhhhcCCCCCceEEE
Q 013846 236 Q-GLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSATLFNKGLEVIEAHYLFGAEYDNIEII 314 (435)
Q Consensus 236 ~-g~~~~~v~kIiLTASGGPFr~~~~e~L~~vT~~dALkHP~W~MG~KITIDSATmmNKgLEvIEA~~LF~i~~d~I~vv 314 (435)
+ |++.++|++|||||||||||+||+|+|++|||+|||+||||+||+||||||||||||||||||||||||+||||||||
T Consensus 161 ~~g~~~~~v~kiiLTASGGpFr~~~~e~l~~vt~~~AL~HP~W~MG~KITIDSATmmNKglEvIEA~~LF~~~~d~I~vv 240 (389)
T TIGR00243 161 QHGLEELGVVSIILTASGGAFRDTPLEDLPTVTPQQALKHPNWSMGRKITIDSATMMNKGLEYIEARWLFGASAEQIDVL 240 (389)
T ss_pred ccCCCcccccEEEEECCCcccCCCCHHHHhCCCHHHHhcCCCCcCCCeeeeehHhhhhhhHHHHHHHHHcCCCHHHeEEE
Confidence 9 776667999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCcceeEEEEecCCcEEEecCCCCchHHHHhcccCCCccccCCCCCCCCCCCCCCCceecCCCCCCCchHHHHHHHHH
Q 013846 315 IHPQSIIHSMVETQDSSVIGQLGWPDMRLPIIYTMSWPERIYCSELTWPRLDLSKLGSLTFVAPDTAKYPSVNLAYAAGR 394 (435)
Q Consensus 315 IHPqSiIHsmVef~DGSv~Aqls~PDMrlPI~yAL~yP~R~~~~~~~~~~ldl~~~~~LtF~~pD~~rFP~l~LA~~a~~ 394 (435)
|||||||||||||.|||++||||.||||+||+|||+||+|. +..+++|||.++++|||++||++|||||+|||+|++
T Consensus 241 IHpqSiIHsmVef~DGSv~aql~~pDMrlPI~yAL~yP~R~---~~~~~~ldl~~~~~L~F~~pD~~rfP~l~La~ea~~ 317 (389)
T TIGR00243 241 IHPQSIIHSMVEFQDGSVIAQLGEPDMRLPIAYAMAWPNRV---NSGVKPLDLCKLSALTFEEPDFDRYPCLKLAMEAFK 317 (389)
T ss_pred ECCCCceeEEEEEcCccEEEEeCCCCcHHHHHHHcCCcccc---cCCCCCcCccccCCCeeeCCChhhCchHHHHHHHHh
Confidence 99999999999999999999999999999999999999999 456899999999999999999999999999999999
Q ss_pred cCCCceeeeecchHHHHHHHHhCCCCcccHHHHHHhh
Q 013846 395 AGGTMTGVLSAANEKAVEMFIDEKYVSLVLIENIALL 431 (435)
Q Consensus 395 ~Gg~~p~vlNAANEvAV~aFL~~kI~F~dI~~ii~~~ 431 (435)
.||++|+|||||||+||++||+|||+|+||+++|+++
T Consensus 318 ~gg~~p~vlNAANEvAV~~FL~~kI~F~dI~~~i~~~ 354 (389)
T TIGR00243 318 AGQAATTVLNAANEVAVAAFLAQQIRFLDIAALISKV 354 (389)
T ss_pred cCCCceEEEEHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 9999999999999999999999999999999999876
No 4
>PRK12464 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=100.00 E-value=4.8e-154 Score=1163.83 Aligned_cols=346 Identities=49% Similarity=0.822 Sum_probs=337.1
Q ss_pred EEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEEechhHH
Q 013846 81 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGV 160 (435)
Q Consensus 81 IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~~G~egl 160 (435)
|||||||||+|||||+++|||+|+|+||++|+|+++|.+|+++|+|++|++.|++.+.+|++.+. +.+++|+.|++|+
T Consensus 1 ILGsTGSIG~qtLdVi~~~~d~f~v~~Laa~~n~~~L~~q~~~f~p~~v~i~~~~~~~~l~~~l~--~~~~~v~~G~~~l 78 (383)
T PRK12464 1 ILGSTGSIGTSALDVVSAHPEHFKVVGLTANYNIELLEQQIKRFQPRIVSVADKELADTLRTRLS--ANTSKITYGTDGL 78 (383)
T ss_pred CCccccHHHHHHHHHHHhCccccEEEEEECCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhcc--CCCcEEEECHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999998774 2458999999999
Q ss_pred HHHhcCCCCCEEEEecccccCcHHHHHHHHcCCceeecccceeeeccccchHHhhhcCCeEeecccchhhHHHhhcCCCC
Q 013846 161 IEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPE 240 (435)
Q Consensus 161 ~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLANKESLV~aG~lv~~~a~~~~~~IiPVDSEHsAIfQ~L~g~~~ 240 (435)
+++++.+++|+||+||||++||.||++||++||+|||||||||||||++|++++++++++|+|||||||||||||+|++.
T Consensus 79 ~~l~~~~~~D~vv~AivG~aGL~pt~~Ai~~gk~iaLANKESLV~aG~li~~~~~~~~~~iiPVDSEHsAIfQ~L~~~~~ 158 (383)
T PRK12464 79 IAVATHPGSDLVLSSVVGAAGLLPTIEALKAKKDIALANKETLVAAGHIVTDLAKQNGCRLIPVDSEHSAIFQCLNGENN 158 (383)
T ss_pred HHHHcCCCCCEEEEhhhcHhhHHHHHHHHHCCCcEEEechhhHhhhHHHHHHHHHHcCCeEEeechhHHHHHHHccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999866
Q ss_pred CccceEEEEeeCCCCCCCChhhhccCCHHHHhcCCCCCCCcccccchhhhhhhhHhHhHhhhhcCCCCCceEEEEcCCcc
Q 013846 241 GALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSATLFNKGLEVIEAHYLFGAEYDNIEIIIHPQSI 320 (435)
Q Consensus 241 ~~v~kIiLTASGGPFr~~~~e~L~~vT~~dALkHP~W~MG~KITIDSATmmNKgLEvIEA~~LF~i~~d~I~vvIHPqSi 320 (435)
++|++|||||||||||+||+|+|++|||+|||+||||+||+||||||||||||||||||||||||+||||||||||||||
T Consensus 159 ~~v~kiiLTASGGpFr~~~~e~l~~vT~~~AL~HP~W~MG~KITIDSATmmNKglEvIEA~~LF~i~~d~I~vvIHPqSi 238 (383)
T PRK12464 159 KEIDKLIVTASGGAFRDKTREEMATLTAKDALKHPNWLMGAKLTIDSATLMNKGFEVIEAHWLFDIPYEKIDVLIHKESI 238 (383)
T ss_pred ccccEEEEECCCcccCCCCHHHHhCCCHHHHhcCCCCcCCCeeeeehHhhhhhhHHHHHHHHHcCCCHHHeEEEECCCCc
Confidence 77999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEecCCcEEEecCCCCchHHHHhcccCCCccccCCCCCCCCCCCCCCCceecCCCCCCCchHHHHHHHHHcCCCce
Q 013846 321 IHSMVETQDSSVIGQLGWPDMRLPIIYTMSWPERIYCSELTWPRLDLSKLGSLTFVAPDTAKYPSVNLAYAAGRAGGTMT 400 (435)
Q Consensus 321 IHsmVef~DGSv~Aqls~PDMrlPI~yAL~yP~R~~~~~~~~~~ldl~~~~~LtF~~pD~~rFP~l~LA~~a~~~Gg~~p 400 (435)
|||||||.|||++||||.||||+||+|||+||+|.+ ..+++|||.++++|+|++||++|||||+|||+|+++||++|
T Consensus 239 VHsmVef~DGSv~aql~~pDMr~PI~yAL~yP~R~~---~~~~~ldl~~~~~L~F~~pD~~rfP~l~La~~a~~~gg~~p 315 (383)
T PRK12464 239 IHSLVEFIDGSVLAQLGAPDMRMPIQYAFHYPTRLP---SSYEKLNLLEIGSLHFEKPDLEKFPCLQYAYEAGKIGGTTP 315 (383)
T ss_pred eeEEEEEcCccEEEEeCCCCcHHHHHHHcCCccccC---CCCCCcCccccCCCeeeCCChhhCcHHHHHHHHHHhCCCce
Confidence 999999999999999999999999999999999994 56899999999999999999999999999999999999999
Q ss_pred eeeecchHHHHHHHHhCCCCcccHHHHHHhh
Q 013846 401 GVLSAANEKAVEMFIDEKYVSLVLIENIALL 431 (435)
Q Consensus 401 ~vlNAANEvAV~aFL~~kI~F~dI~~ii~~~ 431 (435)
+|||||||+||++||+|||+|+||+++|+++
T Consensus 316 ~vlNAANEvAV~aFL~~kI~F~dI~~ii~~~ 346 (383)
T PRK12464 316 AVLNAANEIANALFLKNRIAFFDIEKTIYAT 346 (383)
T ss_pred EEEEhhhHHHHHHHHcCCCCchhHHHHHHHH
Confidence 9999999999999999999999999999876
No 5
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=100.00 E-value=3e-145 Score=1102.59 Aligned_cols=351 Identities=58% Similarity=0.897 Sum_probs=342.6
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEEe
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~~ 155 (435)
||||+|||||||||+|||||++++||+|+|+||++++|+++|.+|+++|+|++|++.|++.+.+|++.+.+ .+++++.
T Consensus 1 mk~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~n~~~l~~q~~~f~p~~v~i~~~~~~~~l~~~l~~--~~~~v~~ 78 (385)
T PRK05447 1 MKRITILGSTGSIGTQTLDVIRRNPDRFRVVALSAGKNVELLAEQAREFRPKYVVVADEEAAKELKEALAA--AGIEVLA 78 (385)
T ss_pred CceEEEEcCChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhcc--CCceEEE
Confidence 68999999999999999999999999999999999999999999999999999999999999999998753 4578999
Q ss_pred chhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCceeecccceeeeccccchHHhhhcCCeEeecccchhhHHHhh
Q 013846 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 235 (435)
Q Consensus 156 G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLANKESLV~aG~lv~~~a~~~~~~IiPVDSEHsAIfQ~L 235 (435)
|++|+.++++.+++|+||+||+|++||.||++||++||+|+|||||+||+||++|+++++++|++|+|||||||||||||
T Consensus 79 G~~~~~~l~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK~VaLANKEslV~aG~~i~~~a~~~g~~i~PVDSEh~ai~q~l 158 (385)
T PRK05447 79 GEEGLCELAALPEADVVVAAIVGAAGLLPTLAAIRAGKRIALANKESLVCAGELVMDAAKKSGAQILPVDSEHSAIFQCL 158 (385)
T ss_pred ChhHHHHHhcCCCCCEEEEeCcCcccHHHHHHHHHCCCcEEEeCHHHHHhhHHHHHHHHHHcCCeEEEECHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccceEEEEeeCCCCCCCChhhhccCCHHHHhcCCCCCCCcccccchhhhhhhhHhHhHhhhhcCCCCCceEEEE
Q 013846 236 QGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSATLFNKGLEVIEAHYLFGAEYDNIEIII 315 (435)
Q Consensus 236 ~g~~~~~v~kIiLTASGGPFr~~~~e~L~~vT~~dALkHP~W~MG~KITIDSATmmNKgLEvIEA~~LF~i~~d~I~vvI 315 (435)
++.+.++|++|+|||||||||+|++|+|++|||+|||+||||+||+|||||||||||||||+||||||||+|||||||||
T Consensus 159 ~~~~~~~i~~iilTASGGpFr~~~~~~l~~vt~~~al~HPnW~MG~kitiDSAtm~NKgle~IEA~~Lf~~~~~~I~vvI 238 (385)
T PRK05447 159 PGEKQEGVEKIILTASGGPFRDWPLEELANVTPEQALKHPNWSMGRKITIDSATMMNKGLEVIEAHWLFGLPYEQIEVVI 238 (385)
T ss_pred cCCCccccceEEEecCCCcccCCCHHHHhcCCHHHHhcCCCCCCCCceeecHHHHhcchHHHHhHHHHcCCChhhEEEEE
Confidence 99877789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceeEEEEecCCcEEEecCCCCchHHHHhcccCCCccccCCCCCCCCCCCCCCCceecCCCCCCCchHHHHHHHHHc
Q 013846 316 HPQSIIHSMVETQDSSVIGQLGWPDMRLPIIYTMSWPERIYCSELTWPRLDLSKLGSLTFVAPDTAKYPSVNLAYAAGRA 395 (435)
Q Consensus 316 HPqSiIHsmVef~DGSv~Aqls~PDMrlPI~yAL~yP~R~~~~~~~~~~ldl~~~~~LtF~~pD~~rFP~l~LA~~a~~~ 395 (435)
||||||||||||+|||++||||.||||+||+|||+||+|. +...++|||.++++|||++||++|||||+|||+|++.
T Consensus 239 HpqSivHsmVef~DGsv~aql~~pDMr~pI~yaL~~P~R~---~~~~~~ld~~~~~~L~F~~pd~~rfp~l~La~~a~~~ 315 (385)
T PRK05447 239 HPQSIIHSMVEYVDGSVLAQLGPPDMRLPIAYALAYPERV---PSGVKPLDLTKLGTLTFEPPDFERFPCLKLAYEALKA 315 (385)
T ss_pred CCcCceeEEEEEeCCcEEEeeCCCCcHHHHHHHcCCcccC---CCCCCCcCccccCCCeeeCCChhhCcHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999 4678999999999999999999999999999999999
Q ss_pred CCCceeeeecchHHHHHHHHhCCCCcccHHHHHHhh
Q 013846 396 GGTMTGVLSAANEKAVEMFIDEKYVSLVLIENIALL 431 (435)
Q Consensus 396 Gg~~p~vlNAANEvAV~aFL~~kI~F~dI~~ii~~~ 431 (435)
||++|+|||||||+||++||+|||+|+||+++|+++
T Consensus 316 g~~~~~vlNAANEvAV~~FL~~kI~F~dI~~~i~~~ 351 (385)
T PRK05447 316 GGTAPAVLNAANEVAVAAFLAGKIGFLDIADLIEKV 351 (385)
T ss_pred CCCceeEeEHHHHHHHHHHHcCCCCchhHHHHHHHH
Confidence 999999999999999999999999999999999876
No 6
>PF08436 DXP_redisom_C: 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal; InterPro: IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found to the C terminus of IPR013512 from INTERPRO domains in bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0005515 protein binding; PDB: 3AUA_A 3AU9_B 3AU8_B 3A14_A 3A06_A 2Y1D_B 4AIC_A 2JD0_B 2Y1C_B 2JD1_A ....
Probab=100.00 E-value=6.4e-57 Score=370.54 Aligned_cols=84 Identities=73% Similarity=1.126 Sum_probs=77.9
Q ss_pred EeecccchhhHHHhhcCCCCCccceEEEEeeCCCCCCCChhhhccCCHHHHhcCCCCCCCcccccchhhhhhhhHhHhHh
Q 013846 221 ILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSATLFNKGLEVIEA 300 (435)
Q Consensus 221 IiPVDSEHsAIfQ~L~g~~~~~v~kIiLTASGGPFr~~~~e~L~~vT~~dALkHP~W~MG~KITIDSATmmNKgLEvIEA 300 (435)
|+|||||||||||||++++.++|++|||||||||||++++++|++||++|||+||||+||+|||||||||||||||||||
T Consensus 1 i~PvDSEHsAifQ~L~~~~~~~v~~i~lTASGGpFr~~~~~~l~~vt~~~al~HP~W~MG~KITiDSATm~NKglEviEA 80 (84)
T PF08436_consen 1 ILPVDSEHSAIFQCLQGEKREEVEKIILTASGGPFRDKPREELKNVTPEQALKHPNWSMGKKITIDSATMMNKGLEVIEA 80 (84)
T ss_dssp EEE-SHHHHHHHHHSGHHHHCTEEEEEEEE--STTTTSHHHHHTT--HHHHTSSSSSCCHHHHHHHHHTTHHHHHHHHHH
T ss_pred CcccccHHHHHHHHCCCCCccccCEEEEECcchhhCCCCHHHHcCCCHHHHhhCCCCcCCCeeeechHHHHHHhHHHHHH
Confidence 79999999999999999988899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhc
Q 013846 301 HYLF 304 (435)
Q Consensus 301 ~~LF 304 (435)
||||
T Consensus 81 ~~LF 84 (84)
T PF08436_consen 81 HWLF 84 (84)
T ss_dssp HHHH
T ss_pred HhhC
Confidence 9999
No 7
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=100.00 E-value=1.6e-46 Score=332.47 Aligned_cols=129 Identities=57% Similarity=0.852 Sum_probs=118.9
Q ss_pred EEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEEechh
Q 013846 79 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQ 158 (435)
Q Consensus 79 I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~~G~e 158 (435)
|+|||||||||+|||||+++|||+|+|+||++|+|+++|.+|+++|+|++|++.|++.++++++.+...+.+++++.|+|
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~~d~f~v~~Lsa~~n~~~L~~q~~~f~p~~v~i~~~~~~~~l~~~~~~~~~~~~v~~G~~ 80 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKHPDKFEVVALSAGSNIEKLAEQAREFKPKYVVIADEEAYEELKKALPSKGPGIEVLSGPE 80 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHCTTTEEEEEEEESSTHHHHHHHHHHHT-SEEEESSHHHHHHHHHHHHHTTSSSEEEESHH
T ss_pred CEEEcCCcHHHHHHHHHHHhCCCceEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHHhhhcCCCCEEEeChH
Confidence 78999999999999999999999999999999999999999999999999999999999999998864456799999999
Q ss_pred HHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCceeecccceeeecc
Q 013846 159 GVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG 207 (435)
Q Consensus 159 gl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLANKESLV~aG 207 (435)
|++++++++++|+||+||||++||.||++||++||+|||||||||||||
T Consensus 81 ~l~~~~~~~~~D~vv~Ai~G~aGL~pt~~Ai~~gk~iaLANKEsLV~aG 129 (129)
T PF02670_consen 81 GLEELAEEPEVDIVVNAIVGFAGLKPTLAAIKAGKDIALANKESLVCAG 129 (129)
T ss_dssp HHHHHHTHTT-SEEEE--SSGGGHHHHHHHHHTTSEEEE--SHHHHHHH
T ss_pred HHHHHhcCCCCCEEEEeCcccchHHHHHHHHHCCCeEEEechhhhhcCC
Confidence 9999999899999999999999999999999999999999999999998
No 8
>PF13288 DXPR_C: DXP reductoisomerase C-terminal domain; PDB: 3A14_A 3A06_A 3IIE_A 2Y1D_B 4AIC_A 2JD0_B 2Y1C_B 2JD1_A 2JCX_A 2Y1G_A ....
Probab=100.00 E-value=7e-38 Score=274.22 Aligned_cols=93 Identities=49% Similarity=0.728 Sum_probs=78.5
Q ss_pred cCCCCchHHHHhcccCCCccccCCCCCCCCCCCCCCCceecCCCCCCCchHHHHHHHHHcCCCceeeeecchHHHHHHHH
Q 013846 336 LGWPDMRLPIIYTMSWPERIYCSELTWPRLDLSKLGSLTFVAPDTAKYPSVNLAYAAGRAGGTMTGVLSAANEKAVEMFI 415 (435)
Q Consensus 336 ls~PDMrlPI~yAL~yP~R~~~~~~~~~~ldl~~~~~LtF~~pD~~rFP~l~LA~~a~~~Gg~~p~vlNAANEvAV~aFL 415 (435)
||.||||+||+|||+||+|. +..+++|||.++++|||++||++|||||+|||+|++.||++|+|||||||+||++||
T Consensus 1 ls~PDMrlPI~yAL~~P~r~---~~~~~~ld~~~~~~L~F~~pd~~rfP~l~LA~~a~~~gg~~~~vlNAANEvAV~aFL 77 (121)
T PF13288_consen 1 LSPPDMRLPIAYALSYPERL---PSPVEPLDFTKLGSLTFEEPDFERFPCLKLAYEALRKGGTAPIVLNAANEVAVEAFL 77 (121)
T ss_dssp E-SS-THHHHHHHHHTTS-----TTSS----CCCHEEEEEBE--TTT-CHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CCCcccHHHHHHHcCCcccC---CCCCCCCChhhccCceecCCChHhCcHHHHHHHHHHccCcHHHHHHHHHHHHHHHHH
Confidence 79999999999999999998 567899999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCcccHHHHHHhh
Q 013846 416 DEKYVSLVLIENIALL 431 (435)
Q Consensus 416 ~~kI~F~dI~~ii~~~ 431 (435)
+|||+|+||+++|+++
T Consensus 78 ~~kI~F~~I~~~i~~~ 93 (121)
T PF13288_consen 78 EGKISFLDIPDIIEKV 93 (121)
T ss_dssp TTSS-TTHHHHHHHHH
T ss_pred HcCCCHhhHHHHHHHH
Confidence 9999999999999976
No 9
>PRK06349 homoserine dehydrogenase; Provisional
Probab=98.25 E-value=3.5e-06 Score=87.58 Aligned_cols=159 Identities=21% Similarity=0.344 Sum_probs=105.5
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCC--------ceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcC
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHED--------KFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANV 147 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd--------~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~ 147 (435)
+-||+|+| +|.||+..++++.++++ +++|+++... |.++. +.+....
T Consensus 3 ~i~VgiiG-~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~-~~~~~----~~~~~~~------------------- 57 (426)
T PRK06349 3 PLKVGLLG-LGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVR-DLEKD----RGVDLPG------------------- 57 (426)
T ss_pred eEEEEEEe-eCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeC-Chhhc----cCCCCcc-------------------
Confidence 35899999 79999999999988763 6899998764 43331 1111100
Q ss_pred CCCceEEechhHHHHHhcCCCCCEEEEecccc-cCcHHHHHHHHcCCceeecccceeeeccccchHHhhhcCCeEe----
Q 013846 148 EEKPEILAGEQGVIEAARHPDAVTVVTGIVGC-AGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKIL---- 222 (435)
Q Consensus 148 ~~~~~v~~G~egl~~l~~~~~~D~Vv~AIvG~-aGL~pt~~Ai~~gK~iaLANKESLV~aG~lv~~~a~~~~~~Ii---- 222 (435)
..+. +...+++..+++|+||.++.|. .+..-+.+||++||.|..+||..+..-|+-+.++|+++|+.+.
T Consensus 58 ---~~~~---~d~~~ll~d~~iDvVve~tg~~~~~~~~~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~l~fEas 131 (426)
T PRK06349 58 ---ILLT---TDPEELVNDPDIDIVVELMGGIEPARELILKALEAGKHVVTANKALLAVHGAELFAAAEEKGVDLYFEAA 131 (426)
T ss_pred ---ccee---CCHHHHhhCCCCCEEEECCCCchHHHHHHHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCcEEEEEE
Confidence 0011 2245566778899999998763 3456677999999999999998888889999999999998776
Q ss_pred -----ecccchhhHHHhhcCCCCCccceEEEEeeCCCCCCCChhhh--ccCCHHHHhc
Q 013846 223 -----PADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKL--KEVKVADALK 273 (435)
Q Consensus 223 -----PVDSEHsAIfQ~L~g~~~~~v~kIiLTASGGPFr~~~~e~L--~~vT~~dALk 273 (435)
|+ +..+-++|.+ ++|.+|.=-=+|= -++=+.+| +..+.+|||+
T Consensus 132 V~ggiPi---i~~l~~~l~~---~~I~~I~GIlnGT--~nyIl~~m~~~g~~f~~al~ 181 (426)
T PRK06349 132 VAGGIPI---IKALREGLAA---NRITRVMGIVNGT--TNYILTKMTEEGLSFEDALK 181 (426)
T ss_pred eeccCch---HHHHHhhccc---CCeeEEEEEEeCc--HHHHHhhhhhcCCCHHHHHH
Confidence 22 3344444444 3455543111221 11225556 4777888875
No 10
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=97.99 E-value=1.4e-06 Score=74.06 Aligned_cols=110 Identities=24% Similarity=0.305 Sum_probs=73.0
Q ss_pred cCChHhHHHHHHHHhCCC--ceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEEechhHHH
Q 013846 84 STGSIGTQTLDIVAEHED--KFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVI 161 (435)
Q Consensus 84 STGSIG~qtLdVi~~~pd--~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~~G~egl~ 161 (435)
.+|.||++.++.+.++++ +++|++++..+ ..+.... ..... +..+... +.
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~--~~~~~~~-------------------~~~~~----~~~~~~~---~~ 52 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRS--MLISKDW-------------------AASFP----DEAFTTD---LE 52 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESS--EEEETTH-------------------HHHHT----HSCEESS---HH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECC--chhhhhh-------------------hhhcc----cccccCC---HH
Confidence 369999999999999875 69999988765 1111110 11110 0122222 33
Q ss_pred HHhcCCCCCEEEEecccccCcH-HHHHHHHcCCceeecccceee--eccccchHHhhhcCCeEe
Q 013846 162 EAARHPDAVTVVTGIVGCAGLK-PTVAAIEAGKDIALANKETLI--AGGPFVLPLAHKHNIKIL 222 (435)
Q Consensus 162 ~l~~~~~~D~Vv~AIvG~aGL~-pt~~Ai~~gK~iaLANKESLV--~aG~lv~~~a~~~~~~Ii 222 (435)
++....++|+||.+ +|...+. -...+|++|+.|..+||+.+. .-++-+.++|+++|++++
T Consensus 53 ~~~~~~~~dvvVE~-t~~~~~~~~~~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~~~~ 115 (117)
T PF03447_consen 53 ELIDDPDIDVVVEC-TSSEAVAEYYEKALERGKHVVTANKGALADEALYEELREAARKNGVRIY 115 (117)
T ss_dssp HHHTHTT-SEEEE--SSCHHHHHHHHHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-EEE
T ss_pred HHhcCcCCCEEEEC-CCchHHHHHHHHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCCEEE
Confidence 44444479999999 5544443 467899999999999999999 889999999999998764
No 11
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=97.92 E-value=8.1e-05 Score=72.86 Aligned_cols=145 Identities=17% Similarity=0.170 Sum_probs=103.8
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccC-CHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEE
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGS-NITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~-N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~ 154 (435)
|.||+|+|. |.||+..++.+.++|+ ++++++.... +.+...+. +.. ++.++
T Consensus 1 m~rVgIiG~-G~iG~~~~~~l~~~~~-~~l~~v~~~~~~~~~~~~~---~~~-----------------------~~~~~ 52 (265)
T PRK13303 1 MMKVAMIGF-GAIGAAVLELLEHDPD-LRVDWVIVPEHSIDAVRRA---LGE-----------------------AVRVV 52 (265)
T ss_pred CcEEEEECC-CHHHHHHHHHHhhCCC-ceEEEEEEcCCCHHHHhhh---hcc-----------------------CCeee
Confidence 458999999 9999999999998865 8888877432 22222111 110 11222
Q ss_pred echhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCceeecccceeeec--cccchHHhhhcCCeEeecccchhhHH
Q 013846 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAG--GPFVLPLAHKHNIKILPADSEHSAIF 232 (435)
Q Consensus 155 ~G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLANKESLV~a--G~lv~~~a~~~~~~IiPVDSEHsAIf 232 (435)
. .+.++ ..++|+|+.+....+-..-...++++||.+...+...+.-. +..+.+.|+++|.+++. +|-.-...
T Consensus 53 ~---d~~~l--~~~~DvVve~t~~~~~~e~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~l~v-~sga~gg~ 126 (265)
T PRK13303 53 S---SVDAL--PQRPDLVVECAGHAALKEHVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGARLHL-LSGAIGGI 126 (265)
T ss_pred C---CHHHh--ccCCCEEEECCCHHHHHHHHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCEEEE-eChHhhCH
Confidence 1 23344 35799999998776666889999999999999988876533 67788899999987665 77777777
Q ss_pred HhhcCCCCCccceEEEEeeCCC
Q 013846 233 QCIQGLPEGALRRIILTASGGA 254 (435)
Q Consensus 233 Q~L~g~~~~~v~kIiLTASGGP 254 (435)
.+|+..+...++.+.+|.-.-|
T Consensus 127 d~l~~~~~g~~~~v~~~~~k~p 148 (265)
T PRK13303 127 DALAAAKEGGLDEVTYTGRKPP 148 (265)
T ss_pred HHHHHHHhCCceEEEEEEecCh
Confidence 7887656677889998865555
No 12
>PRK11579 putative oxidoreductase; Provisional
Probab=97.90 E-value=0.0013 Score=65.84 Aligned_cols=209 Identities=16% Similarity=0.203 Sum_probs=133.7
Q ss_pred eeEEEEecCChHhH-HHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEEe
Q 013846 77 KPISVLGSTGSIGT-QTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (435)
Q Consensus 77 k~I~IlGSTGSIG~-qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~~ 155 (435)
-||+|+|. |.||. ..+..+++.|+ ++|+|++. .|.++.. .+|. . +.++
T Consensus 5 irvgiiG~-G~i~~~~~~~~~~~~~~-~~l~av~d-~~~~~~~---~~~~-~-----------------------~~~~- 53 (346)
T PRK11579 5 IRVGLIGY-GYASKTFHAPLIAGTPG-LELAAVSS-SDATKVK---ADWP-T-----------------------VTVV- 53 (346)
T ss_pred ceEEEECC-CHHHHHHHHHHHhhCCC-CEEEEEEC-CCHHHHH---hhCC-C-----------------------Ccee-
Confidence 48999995 99998 46788888775 99999865 4555432 1221 0 1121
Q ss_pred chhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCceeecccceeeec--cccchHHhhhcCCeEeec-----ccch
Q 013846 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAG--GPFVLPLAHKHNIKILPA-----DSEH 228 (435)
Q Consensus 156 G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLANKESLV~a--G~lv~~~a~~~~~~IiPV-----DSEH 228 (435)
+.+.++.+.+++|.|+.+..=..-..-+..|+++||.|.. .|-.-... ..-+.++|+++|..+... +..+
T Consensus 54 --~~~~ell~~~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~-EKPla~t~~ea~~l~~~a~~~g~~l~v~~~~R~~p~~ 130 (346)
T PRK11579 54 --SEPQHLFNDPNIDLIVIPTPNDTHFPLAKAALEAGKHVVV-DKPFTVTLSQARELDALAKSAGRVLSVFHNRRWDSDF 130 (346)
T ss_pred --CCHHHHhcCCCCCEEEEcCCcHHHHHHHHHHHHCCCeEEE-eCCCCCCHHHHHHHHHHHHHhCCEEEEEeeccCCHHH
Confidence 2345666778899999998877888899999999999874 66644333 355677888888776543 4566
Q ss_pred hhHHHhhcCCCCCccceEEEEeeCCCCCCCChhhhccCCHHHHhcCCCCCCCcccccchhhhhhhhHhHhH-hhhhcCCC
Q 013846 229 SAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSATLFNKGLEVIE-AHYLFGAE 307 (435)
Q Consensus 229 sAIfQ~L~g~~~~~v~kIiLTASGGPFr~~~~e~L~~vT~~dALkHP~W~MG~KITIDSATmmNKgLEvIE-A~~LF~i~ 307 (435)
..+-|.++.....+|..+ ++.-+-++ + . ..++|..-+. -..+.|++-|--.|- ++||||-
T Consensus 131 ~~~k~~i~~g~iG~i~~~--~~~~~~~~--~--~----------~~~~w~~~~~--~ggG~l~d~g~H~id~~~~l~G~- 191 (346)
T PRK11579 131 LTLKALLAEGVLGEVAYF--ESHFDRFR--P--Q----------VRQRWREQGG--PGSGIWYDLAPHLLDQAIQLFGL- 191 (346)
T ss_pred HHHHHHHhcCCCCCeEEE--EEEecccC--C--C----------CccccccCCC--CCCcchhhhhhhHHHHHHHHhCC-
Confidence 677777765444445333 33322221 1 0 1345653221 134678888855553 5899996
Q ss_pred CCceEEEE---cC----CcceeEEEEecCCcEEEecCC
Q 013846 308 YDNIEIII---HP----QSIIHSMVETQDSSVIGQLGW 338 (435)
Q Consensus 308 ~d~I~vvI---HP----qSiIHsmVef~DGSv~Aqls~ 338 (435)
+.++.+.. +| +-..+.+++|.||.+....++
T Consensus 192 ~~~v~a~~~~~~~~~~~~D~~~~~l~f~~g~~~~~~s~ 229 (346)
T PRK11579 192 PVSITVDLAQLRPGAQSTDYFHAILSYPQRRVVLHGTM 229 (346)
T ss_pred CeEEEEEeeeecCCCCCCceEEEEEEECCeEEEEEEEe
Confidence 45555433 23 336688999999987666554
No 13
>PRK06270 homoserine dehydrogenase; Provisional
Probab=97.89 E-value=6.1e-05 Score=76.28 Aligned_cols=210 Identities=21% Similarity=0.274 Sum_probs=129.9
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCC--------CceEEEEEeccC---------CHHHHHHHHHhhCCCEEEEcCcchHH
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHE--------DKFRVVALAAGS---------NITLLADQVKRFKPQVVAVRNESLLD 138 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~p--------d~f~VvaLaa~~---------N~~~L~~q~~~f~P~~v~v~~e~~~~ 138 (435)
+.||+|+|. |-||+..++.+++++ -+++|++++-.+ +.+.+.+..+++..
T Consensus 2 ~i~V~IiG~-G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~------------ 68 (341)
T PRK06270 2 EMKIALIGF-GGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGK------------ 68 (341)
T ss_pred eEEEEEECC-CHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCC------------
Confidence 358999995 999999999998774 269999987532 33333333322210
Q ss_pred HHHHHHhcCCCCceEEe---chhHHHHHhcCCCCCEEEEeccc-----ccCcHHHHHHHHcCCceeecccceeeeccccc
Q 013846 139 EIKEALANVEEKPEILA---GEQGVIEAARHPDAVTVVTGIVG-----CAGLKPTVAAIEAGKDIALANKETLIAGGPFV 210 (435)
Q Consensus 139 ~l~~~l~~~~~~~~v~~---G~egl~~l~~~~~~D~Vv~AIvG-----~aGL~pt~~Ai~~gK~iaLANKESLV~aG~lv 210 (435)
...+. ....+.++...+++|+||.+..- -.+..-...|+++||.|..+||.-+-.-++-+
T Consensus 69 ------------~~~~~~~~~~~d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL 136 (341)
T PRK06270 69 ------------LADYPEGGGEISGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKEL 136 (341)
T ss_pred ------------cccCccccccCCHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHH
Confidence 00000 12345566667789999998753 23366778999999999999998888778888
Q ss_pred hHHhhhcCCeEeeccc---chhhHHHhhcC-CCCCccceEEEEeeCCCCCCCChhhh--ccCCHHHHhcCCCCCCC----
Q 013846 211 LPLAHKHNIKILPADS---EHSAIFQCIQG-LPEGALRRIILTASGGAFRDWPVEKL--KEVKVADALKHPNWSMG---- 280 (435)
Q Consensus 211 ~~~a~~~~~~IiPVDS---EHsAIfQ~L~g-~~~~~v~kIiLTASGGPFr~~~~e~L--~~vT~~dALkHP~W~MG---- 280 (435)
.++|+++|..+.- .+ -+.-|+|.|+. ...++|.+|.=-=||= -++=+.+| +..+.+|||+- -..+|
T Consensus 137 ~~~A~~~g~~~~~-ea~v~~glPii~~l~~~l~g~~I~~I~GIlnGT--~nyIl~~m~~~g~~f~~al~~-Aq~~G~aE~ 212 (341)
T PRK06270 137 KELAKKNGVRFRY-EATVGGAMPIINLAKETLAGNDIKSIKGILNGT--TNYILTRMEEEGLSYEQALAE-AQELGYAEA 212 (341)
T ss_pred HHHHHHcCCEEEE-eeeeeechhHHHHHHhhcccCceEEEEEEEeCc--HHHHHHHHhhcCCCHHHHHHH-HHHcCCCCC
Confidence 9999999987761 10 13345666542 2223455543222221 11224555 67899999863 11222
Q ss_pred -cccccchhhhhhhhHhHhHhhhhcCCCCCceEEEEc
Q 013846 281 -KKITVDSATLFNKGLEVIEAHYLFGAEYDNIEIIIH 316 (435)
Q Consensus 281 -~KITIDSATmmNKgLEvIEA~~LF~i~~d~I~vvIH 316 (435)
+.--||---...|. +|=|+.+||.+.+-=||-++
T Consensus 213 DP~~D~~G~D~a~Kl--~Ila~~~~g~~~~~~~v~~~ 247 (341)
T PRK06270 213 DPTYDVEGIDAALKV--VILANSILGADLTIKDVEVE 247 (341)
T ss_pred CCCCCCccHHHHHHH--HHHHHHHcCCCCCHHHeeec
Confidence 12233333445666 68899999887554444444
No 14
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.56 E-value=0.00081 Score=70.22 Aligned_cols=218 Identities=19% Similarity=0.189 Sum_probs=137.8
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEEe
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~~ 155 (435)
|++|.|+|| |-||+.+..-+.++.| ++|.. |.++.+++.+......++.=++. +++ .
T Consensus 1 m~~ilviGa-G~Vg~~va~~la~~~d-~~V~i--AdRs~~~~~~i~~~~~~~v~~~~------------------vD~-~ 57 (389)
T COG1748 1 MMKILVIGA-GGVGSVVAHKLAQNGD-GEVTI--ADRSKEKCARIAELIGGKVEALQ------------------VDA-A 57 (389)
T ss_pred CCcEEEECC-chhHHHHHHHHHhCCC-ceEEE--EeCCHHHHHHHHhhccccceeEE------------------ecc-c
Confidence 678999999 9999999999999877 88875 44677877766555443221110 011 2
Q ss_pred chhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCc-eeecccceeeeccccchHHhhhcCCeEee---cccchhhH
Q 013846 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD-IALANKETLIAGGPFVLPLAHKHNIKILP---ADSEHSAI 231 (435)
Q Consensus 156 G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~-iaLANKESLV~aG~lv~~~a~~~~~~IiP---VDSEHsAI 231 (435)
+.+++.++.+. .|+|+|++-++-++.-.-+|+++|.+ |=++|.|--. +.+.+.+++.|+.++| +|-=-+-+
T Consensus 58 d~~al~~li~~--~d~VIn~~p~~~~~~i~ka~i~~gv~yvDts~~~~~~---~~~~~~a~~Agit~v~~~G~dPGi~nv 132 (389)
T COG1748 58 DVDALVALIKD--FDLVINAAPPFVDLTILKACIKTGVDYVDTSYYEEPP---WKLDEEAKKAGITAVLGCGFDPGITNV 132 (389)
T ss_pred ChHHHHHHHhc--CCEEEEeCCchhhHHHHHHHHHhCCCEEEcccCCchh---hhhhHHHHHcCeEEEcccCcCcchHHH
Confidence 44677777764 59999999999999999999999988 6688888772 6678889999988887 23222222
Q ss_pred HHhhc-CCCCCccceEEEEeeCCCCCC-CChhhhccCCHHHH---hcCC--CCCCCcccccchhhhhhhhHhHhHhhhhc
Q 013846 232 FQCIQ-GLPEGALRRIILTASGGAFRD-WPVEKLKEVKVADA---LKHP--NWSMGKKITVDSATLFNKGLEVIEAHYLF 304 (435)
Q Consensus 232 fQ~L~-g~~~~~v~kIiLTASGGPFr~-~~~e~L~~vT~~dA---LkHP--~W~MG~KITIDSATmmNKgLEvIEA~~LF 304 (435)
|---. .+-.++|+.|-+=-=|+|=+. -|+.-=-+-+++.. +.-| -|.-|+-++||+ ||..| -+-|
T Consensus 133 ~a~~a~~~~~~~i~si~iy~g~~g~~~~~~l~ya~tws~e~~l~e~~~p~~~~~~Gk~~~v~~-------~~~~~-~~~~ 204 (389)
T COG1748 133 LAAYAAKELFDEIESIDIYVGGLGEHGDNPLGYATTWSPEINLREYTRPARYWENGKWVEVDP-------LEERE-VFEF 204 (389)
T ss_pred HHHHHHHHhhccccEEEEEEecCCCCCCCCccceeeecHHHhHHHhcCceEEEeCCEEEEecC-------ccccc-cccc
Confidence 11110 011125777766666666554 11221122233332 3344 378888888876 55556 2222
Q ss_pred CC-CCCceEEEEcCCcceeEEEEecCCc
Q 013846 305 GA-EYDNIEIIIHPQSIIHSMVETQDSS 331 (435)
Q Consensus 305 ~i-~~d~I~vvIHPqSiIHsmVef~DGS 331 (435)
.. .+-+....-|++ .|+++++.+|-
T Consensus 205 ~~~G~~~~y~~~~~e--l~sL~~~i~~~ 230 (389)
T COG1748 205 PVIGYGDVYAFYHDE--LRSLVKTIPGV 230 (389)
T ss_pred CCCCceeEEecCCcc--HHHHHHhCccc
Confidence 22 233344444444 58888888865
No 15
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=97.56 E-value=0.001 Score=55.67 Aligned_cols=90 Identities=20% Similarity=0.305 Sum_probs=71.5
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEEech
Q 013846 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGE 157 (435)
Q Consensus 78 ~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~~G~ 157 (435)
||+|+|. |++|+.-+.-+.+.+++++|+|+.. .+-+...+.+++|.-+ ...
T Consensus 2 ~v~iiG~-G~~g~~~~~~~~~~~~~~~v~~v~d-~~~~~~~~~~~~~~~~--~~~------------------------- 52 (120)
T PF01408_consen 2 RVGIIGA-GSIGRRHLRALLRSSPDFEVVAVCD-PDPERAEAFAEKYGIP--VYT------------------------- 52 (120)
T ss_dssp EEEEEST-SHHHHHHHHHHHHTTTTEEEEEEEC-SSHHHHHHHHHHTTSE--EES-------------------------
T ss_pred EEEEECC-cHHHHHHHHHHHhcCCCcEEEEEEe-CCHHHHHHHHHHhccc--chh-------------------------
Confidence 7999998 9999999999999888999999864 4667766666666644 221
Q ss_pred hHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCceee
Q 013846 158 QGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIAL 197 (435)
Q Consensus 158 egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaL 197 (435)
.+.++.+.+++|.|+.+...-.-...+..++++||.|.+
T Consensus 53 -~~~~ll~~~~~D~V~I~tp~~~h~~~~~~~l~~g~~v~~ 91 (120)
T PF01408_consen 53 -DLEELLADEDVDAVIIATPPSSHAEIAKKALEAGKHVLV 91 (120)
T ss_dssp -SHHHHHHHTTESEEEEESSGGGHHHHHHHHHHTTSEEEE
T ss_pred -HHHHHHHhhcCCEEEEecCCcchHHHHHHHHHcCCEEEE
Confidence 134555556899999999999999999999999997654
No 16
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=97.53 E-value=0.0013 Score=64.85 Aligned_cols=144 Identities=15% Similarity=0.168 Sum_probs=99.4
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEE
Q 013846 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (435)
Q Consensus 75 ~~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~ 154 (435)
.+.||+|+|. |.||+.-.+-+.+....++|+++.. ++.+...+.+.++.... .+
T Consensus 5 ~~irIGIIG~-G~IG~~~a~~L~~~~~~~el~aV~d-r~~~~a~~~a~~~g~~~------------------------~~ 58 (271)
T PRK13302 5 PELRVAIAGL-GAIGKAIAQALDRGLPGLTLSAVAV-RDPQRHADFIWGLRRPP------------------------PV 58 (271)
T ss_pred CeeEEEEECc-cHHHHHHHHHHHhcCCCeEEEEEEC-CCHHHHHHHHHhcCCCc------------------------cc
Confidence 3468999995 9999998888876434588888754 46677666666654111 11
Q ss_pred echhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCceeecccceeeeccccchHHhhhcCCeE-eecccchhhHHH
Q 013846 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKI-LPADSEHSAIFQ 233 (435)
Q Consensus 155 ~G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLANKESLV~aG~lv~~~a~~~~~~I-iPVDSEHsAIfQ 233 (435)
+.+.+++. ++|+|+.+..-.+--.-...++++||.|...+-.++.- -.-+.++++++|+++ +| |=...-|+
T Consensus 59 ---~~~eell~--~~D~Vvi~tp~~~h~e~~~~aL~aGk~Vi~~s~gal~~-~~~L~~~A~~~g~~l~v~--sGa~~g~d 130 (271)
T PRK13302 59 ---VPLDQLAT--HADIVVEAAPASVLRAIVEPVLAAGKKAIVLSVGALLR-NEDLIDLARQNGGQIIVP--TGALLGLD 130 (271)
T ss_pred ---CCHHHHhc--CCCEEEECCCcHHHHHHHHHHHHcCCcEEEecchhHHh-HHHHHHHHHHcCCEEEEc--chHHHhHH
Confidence 12234443 47999999776655566789999999987643332221 255667889999887 66 77777788
Q ss_pred hhcCCCCCccceEEEEeeC
Q 013846 234 CIQGLPEGALRRIILTASG 252 (435)
Q Consensus 234 ~L~g~~~~~v~kIiLTASG 252 (435)
+|+......++.+.+|.-.
T Consensus 131 ~l~~g~iG~~~~v~~~trk 149 (271)
T PRK13302 131 AVTAAAEGTIHSVKMITRK 149 (271)
T ss_pred HHHHHHcCCceEEEEEEec
Confidence 8886666778899988763
No 17
>PRK08374 homoserine dehydrogenase; Provisional
Probab=97.51 E-value=0.00061 Score=69.19 Aligned_cols=126 Identities=20% Similarity=0.240 Sum_probs=86.0
Q ss_pred eeEEEEecCChHhHHHHHHHHhCC--------CceEEEEEeccC---------CHHHHHHHHHhhCCCEEEEcCcchHHH
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHE--------DKFRVVALAAGS---------NITLLADQVKRFKPQVVAVRNESLLDE 139 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~p--------d~f~VvaLaa~~---------N~~~L~~q~~~f~P~~v~v~~e~~~~~ 139 (435)
-+|+|+| .|.||+.+++++.++. -+++|++++-.+ +++.+.+..+++..-. .
T Consensus 3 i~VaIiG-~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~----------~ 71 (336)
T PRK08374 3 VKVSIFG-FGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLS----------N 71 (336)
T ss_pred eEEEEEC-CCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchh----------h
Confidence 4899999 7999999999998843 358899987432 2222222222221100 0
Q ss_pred HHHHHhcCCCCceEEechhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCceeecccceeeeccccchHHhhhcCC
Q 013846 140 IKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNI 219 (435)
Q Consensus 140 l~~~l~~~~~~~~v~~G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLANKESLV~aG~lv~~~a~~~~~ 219 (435)
+.. +...+ .-...++....++|+||+.+.+-..-.-...++++||.|-.|||..+-.-++-+.++++++++
T Consensus 72 ~~~-----~~~~~----~~~~~ell~~~~~DVvVd~t~~~~a~~~~~~al~~G~~VVtanK~~la~~~~el~~la~~~~~ 142 (336)
T PRK08374 72 WGN-----DYEVY----NFSPEEIVEEIDADIVVDVTNDKNAHEWHLEALKEGKSVVTSNKPPIAFHYDELLDLANERNL 142 (336)
T ss_pred ccc-----ccccc----CCCHHHHHhcCCCCEEEECCCcHHHHHHHHHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCC
Confidence 000 00000 013456665567999999998777667778999999999999999888888889999999998
Q ss_pred eEe
Q 013846 220 KIL 222 (435)
Q Consensus 220 ~Ii 222 (435)
+++
T Consensus 143 ~~~ 145 (336)
T PRK08374 143 PYL 145 (336)
T ss_pred eEE
Confidence 876
No 18
>PRK06392 homoserine dehydrogenase; Provisional
Probab=97.44 E-value=0.00081 Score=68.41 Aligned_cols=206 Identities=19% Similarity=0.199 Sum_probs=118.2
Q ss_pred eEEEEecCChHhHHHHHHHHhC------CCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCc
Q 013846 78 PISVLGSTGSIGTQTLDIVAEH------EDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKP 151 (435)
Q Consensus 78 ~I~IlGSTGSIG~qtLdVi~~~------pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~ 151 (435)
||+|+| -|.||+.+++++++. ...++|++++..+ ..+ ++|+-+- .+++.+.... + ..
T Consensus 2 rVaIiG-fG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~-g~l-------~~~~Gld------l~~l~~~~~~-g-~l 64 (326)
T PRK06392 2 RISIIG-LGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSK-LSY-------YNERGLD------IGKIISYKEK-G-RL 64 (326)
T ss_pred EEEEEC-CCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECC-Ccc-------cCCcCCC------hHHHHHHHhc-C-cc
Confidence 799999 699999999999874 3578999997543 111 1121110 1111111100 0 00
Q ss_pred eEEechh--HHHHHhcCCCCCEEEEecccc----cCcHHHHHHHHcCCceeecccceeeeccccchHHhhhcCCeEe---
Q 013846 152 EILAGEQ--GVIEAARHPDAVTVVTGIVGC----AGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKIL--- 222 (435)
Q Consensus 152 ~v~~G~e--gl~~l~~~~~~D~Vv~AIvG~----aGL~pt~~Ai~~gK~iaLANKESLV~aG~lv~~~a~~~~~~Ii--- 222 (435)
.-+ ..+ .+.++.. .++|+||.+..+. .+..-...||++||.|..|||-.|...++-++++|+++++++.
T Consensus 65 ~~~-~~~~~~~~~ll~-~~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~~~~ea 142 (326)
T PRK06392 65 EEI-DYEKIKFDEIFE-IKPDVIVDVTPASKDGIREKNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRIIRYEA 142 (326)
T ss_pred ccC-CCCcCCHHHHhc-CCCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCeEEEee
Confidence 000 101 2344444 5799999998642 3455568999999999999999998888999999999998875
Q ss_pred ------ecccchhhHHHhhcCCCCCccceEEEEeeCCCCCCCChhhh-ccCCHHHHhcCCCCCCC-----cccccchhhh
Q 013846 223 ------PADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKL-KEVKVADALKHPNWSMG-----KKITVDSATL 290 (435)
Q Consensus 223 ------PVDSEHsAIfQ~L~g~~~~~v~kIiLTASGGPFr~~~~e~L-~~vT~~dALkHP~W~MG-----~KITIDSATm 290 (435)
||=+ .+-.+|.|.+ |.+|-=-=||= -++=+++| +..+.+|||+.- ..+| +.--||---.
T Consensus 143 tV~~g~Pii~---~~~~~~~g~~---i~~i~GilnGT--~nyIl~~m~~g~~f~~al~eA-q~lG~aE~DP~~Dv~G~D~ 213 (326)
T PRK06392 143 TVAGGVPLFS---LRDYSTLPSR---IKNFRGIVSST--INYVIRQEANGRGFLDVVKIA-QKMGIAETNYSDDLMGLDA 213 (326)
T ss_pred eeeeccchhh---hhhhhcccCC---EEEEEEEEeCh--HHHHHhhccCCCCHHHHHHHH-HHcCCCCCCCccccCCHHH
Confidence 6533 3323455543 44442111221 01113333 577888888631 2222 1122322233
Q ss_pred hhhhHhHhHhhhhcCCCC--CceEE
Q 013846 291 FNKGLEVIEAHYLFGAEY--DNIEI 313 (435)
Q Consensus 291 mNKgLEvIEA~~LF~i~~--d~I~v 313 (435)
..|. +|=|+.+||.+. ++|++
T Consensus 214 a~Kl--~ILa~~~~g~~~~~~dv~~ 236 (326)
T PRK06392 214 ARKS--VILANHLFGKDYTLRDVTY 236 (326)
T ss_pred HHHH--HHHHHHHcCCCCCHHHeee
Confidence 4454 677888887754 44443
No 19
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=97.38 E-value=0.0032 Score=61.69 Aligned_cols=145 Identities=18% Similarity=0.149 Sum_probs=95.2
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEEec
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~~G 156 (435)
.||+|+|. |.||+....-+.+.+..++++++. .++.+...+.++++.+. ++
T Consensus 2 mrIgIIG~-G~iG~~ia~~l~~~~~~~elv~v~-d~~~~~a~~~a~~~~~~-------------------------~~-- 52 (265)
T PRK13304 2 LKIGIVGC-GAIASLITKAILSGRINAELYAFY-DRNLEKAENLASKTGAK-------------------------AC-- 52 (265)
T ss_pred CEEEEECc-cHHHHHHHHHHHcCCCCeEEEEEE-CCCHHHHHHHHHhcCCe-------------------------eE--
Confidence 47999994 999999888888764368888876 45666655544444321 11
Q ss_pred hhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCceeecccceeee--ccccchHHhhhcCCeEeecccchhhHHHh
Q 013846 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIA--GGPFVLPLAHKHNIKILPADSEHSAIFQC 234 (435)
Q Consensus 157 ~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLANKESLV~--aG~lv~~~a~~~~~~IiPVDSEHsAIfQ~ 234 (435)
+.+.++. .++|+|+.+..--+-..-...++++||.+....-..+.- -..-+.++|+++|.++.. +|---...+.
T Consensus 53 -~~~~ell--~~~DvVvi~a~~~~~~~~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l~v-~sga~~g~d~ 128 (265)
T PRK13304 53 -LSIDELV--EDVDLVVECASVNAVEEVVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENNCKIYL-PSGAIVGLDG 128 (265)
T ss_pred -CCHHHHh--cCCCEEEEcCChHHHHHHHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCEEEE-eCchHHhHHH
Confidence 2234444 469999998765555555778999999986532211111 123566788999988774 5533443588
Q ss_pred hcCCCCCccceEEEEeeCCC
Q 013846 235 IQGLPEGALRRIILTASGGA 254 (435)
Q Consensus 235 L~g~~~~~v~kIiLTASGGP 254 (435)
|+......++.+.+|..--|
T Consensus 129 i~a~~~G~i~~V~~~~~k~p 148 (265)
T PRK13304 129 IKAASLGEIKSVTLTTRKPP 148 (265)
T ss_pred HHHHhcCCccEEEEEEecCh
Confidence 87655677888888876555
No 20
>PRK06813 homoserine dehydrogenase; Validated
Probab=97.35 E-value=0.00031 Score=72.03 Aligned_cols=172 Identities=18% Similarity=0.219 Sum_probs=99.8
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCC--------ceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCC
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHED--------KFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVE 148 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd--------~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~ 148 (435)
.+|+|+| .|.||+..++++.++.+ +++|++++.. +..++.+- -+.++. .+........+...+
T Consensus 3 i~I~liG-~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~-~~~~~~~~--gi~~~~-~l~~~~~~~~~~~~~---- 73 (346)
T PRK06813 3 IKVVLSG-YGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGR-NVAIHNED--GLSIHH-LLRYGGGSCAIEKYI---- 73 (346)
T ss_pred eEEEEEe-cChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEec-chhhcccc--CCChhh-hhhccccccchhhhh----
Confidence 4899999 89999999999987643 5788888643 33322210 000000 000000000000000
Q ss_pred CCceEEechhHHHHHh-cCCCCCEEEEec----c-cccCcHHHHHHHHcCCceeecccceeeeccccchHHhhhcCCeEe
Q 013846 149 EKPEILAGEQGVIEAA-RHPDAVTVVTGI----V-GCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKIL 222 (435)
Q Consensus 149 ~~~~v~~G~egl~~l~-~~~~~D~Vv~AI----v-G~aGL~pt~~Ai~~gK~iaLANKESLV~aG~lv~~~a~~~~~~Ii 222 (435)
.. -..++. ...+.|+||... . |-.+.....+||++||.|-.|||..+-.-|+-++++|+++|+.++
T Consensus 74 ------~~--~~~~~~~~~~~~dVvVe~T~s~~~~~e~a~~~~~~aL~~G~hVVTANK~~la~~~~eL~~lA~~~g~~~~ 145 (346)
T PRK06813 74 ------EH--HPEERATDNISGTVLVESTVTNLKDGNPGKQYIKQAIEKKMDIVAISKGALVTNWREINEAAKIANVRIR 145 (346)
T ss_pred ------cc--ChHHHhcCCCCCCEEEECCCCccCCchHHHHHHHHHHHCCCeEEcCCcHHHhccHHHHHHHHHHcCCeEE
Confidence 00 001122 223689999983 2 245566678999999999999999999999999999999998774
Q ss_pred ---------ecccchhhHHHhhcCCCCCccceEEEEeeCCCCCCCChhhh--ccCCHHHHhc
Q 013846 223 ---------PADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKL--KEVKVADALK 273 (435)
Q Consensus 223 ---------PVDSEHsAIfQ~L~g~~~~~v~kIiLTASGGPFr~~~~e~L--~~vT~~dALk 273 (435)
||= +.+-.++.|. +|.+|.=-=||= -++=+.+| ...+.++||+
T Consensus 146 yEasVggGiPiI---~~l~~~~~g~---~I~~i~GIlNGT--~NyIL~~m~~~g~~f~eal~ 199 (346)
T PRK06813 146 YSGATAAALPTL---DIGQFSLAGC---HIEKIEGILNGT--TNYILTKMNEEDITFEEALK 199 (346)
T ss_pred EeeeeeeccchH---HHHhhhcccC---cEEEEEEEEech--HHHHHhhhhhcCCCHHHHHH
Confidence 552 2232344443 354442111221 11225555 4778888876
No 21
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=97.32 E-value=0.0042 Score=71.87 Aligned_cols=194 Identities=18% Similarity=0.214 Sum_probs=124.4
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCCceE------------EEEEeccCCHHHHHHHHHhh-CCCEEEEcCcchHHHHH
Q 013846 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFR------------VVALAAGSNITLLADQVKRF-KPQVVAVRNESLLDEIK 141 (435)
Q Consensus 75 ~~k~I~IlGSTGSIG~qtLdVi~~~pd~f~------------VvaLaa~~N~~~L~~q~~~f-~P~~v~v~~e~~~~~l~ 141 (435)
.+|||+|+|| |.||....+.+.++|+ ++ +|++ +-.|.+.+.+.++.+ +.+.+.+ |
T Consensus 568 ~~~rIlVLGA-G~VG~~~a~~La~~~~-~~~~~~~~~~~~~~lV~V-aD~~~~~a~~la~~~~~~~~v~l-D-------- 635 (1042)
T PLN02819 568 KSQNVLILGA-GRVCRPAAEYLASVKT-ISYYGDDSEEPTDVHVIV-ASLYLKDAKETVEGIENAEAVQL-D-------- 635 (1042)
T ss_pred cCCcEEEECC-CHHHHHHHHHHHhCcC-ccccccccccccccEEEE-ECCCHHHHHHHHHhcCCCceEEe-e--------
Confidence 4789999998 9999999999999876 22 2333 345556655555554 2222222 1
Q ss_pred HHHhcCCCCceEEechhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCceeecccceeeeccccchHHhhhcCCeE
Q 013846 142 EALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKI 221 (435)
Q Consensus 142 ~~l~~~~~~~~v~~G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLANKESLV~aG~lv~~~a~~~~~~I 221 (435)
+...+.+.++.+ ++|.||+++-......-..+|+++||.+.-+. ..+..-.-+.+.|++.|+.+
T Consensus 636 ------------v~D~e~L~~~v~--~~DaVIsalP~~~H~~VAkaAieaGkHvv~ek--y~~~e~~~L~e~Ak~AGV~~ 699 (1042)
T PLN02819 636 ------------VSDSESLLKYVS--QVDVVISLLPASCHAVVAKACIELKKHLVTAS--YVSEEMSALDSKAKEAGITI 699 (1042)
T ss_pred ------------cCCHHHHHHhhc--CCCEEEECCCchhhHHHHHHHHHcCCCEEECc--CCHHHHHHHHHHHHHcCCEE
Confidence 122344444443 49999999999999999999999999997774 33444555678899999999
Q ss_pred ee---cccchhh--HHHhhcCC--CCCccceEEEEeeCCC---CCCCChhhhccCCHHHHhc---CC--CCCCCcccccc
Q 013846 222 LP---ADSEHSA--IFQCIQGL--PEGALRRIILTASGGA---FRDWPVEKLKEVKVADALK---HP--NWSMGKKITVD 286 (435)
Q Consensus 222 iP---VDSEHsA--IfQ~L~g~--~~~~v~kIiLTASGGP---Fr~~~~e~L~~vT~~dALk---HP--~W~MG~KITID 286 (435)
+| .|.-... .-+++... ...+|..+....=|=| +-+=++..--+-+|+.+|. .| -|.-|+.++||
T Consensus 700 m~e~GlDPGid~~lA~~~Id~~~~~~GkI~s~~s~~GGLP~pe~~~npL~YkfsWSp~gvi~~~~npa~~i~~G~~~~V~ 779 (1042)
T PLN02819 700 LCEMGLDPGIDHMMAMKMIDDAHERGGKVKSFTSYCGGLPSPEAANNPLAYKFSWNPAGAIKAGQNPAVYKSNGQIIHVD 779 (1042)
T ss_pred EECCccCHHHHHHHHHHHHHhhcccCCcEEEEEEEEcCccCcccCCCcccccccCCHHHHHHHhcCcceeeECCEEEEec
Confidence 87 4555544 44555432 2245666655554445 2222233223344444433 34 37789999999
Q ss_pred hhhhhhhhHh
Q 013846 287 SATLFNKGLE 296 (435)
Q Consensus 287 SATmmNKgLE 296 (435)
...||...-+
T Consensus 780 ~~~l~~~~~~ 789 (1042)
T PLN02819 780 GENLFASAVR 789 (1042)
T ss_pred chhhhhhccc
Confidence 9887766544
No 22
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=97.27 E-value=0.0023 Score=62.55 Aligned_cols=212 Identities=17% Similarity=0.213 Sum_probs=142.5
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEE
Q 013846 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (435)
Q Consensus 75 ~~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~ 154 (435)
.+.||+|+|+.|..++.-+..+++.++.++++++. ..|.+++.+.+++|....++
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~-d~~~~~a~~~a~~~~~~~~~------------------------ 56 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVV-DRDPERAEAFAEEFGIAKAY------------------------ 56 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEe-cCCHHHHHHHHHHcCCCccc------------------------
Confidence 46799999999888888999999987667888865 56889999999999865111
Q ss_pred echhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCceee------cccceeeeccccchHHhhhcCCeEee-----
Q 013846 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIAL------ANKETLIAGGPFVLPLAHKHNIKILP----- 223 (435)
Q Consensus 155 ~G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaL------ANKESLV~aG~lv~~~a~~~~~~IiP----- 223 (435)
+.+.++.+.+++|.|+.+..=..=...+++||++||.|.. -=.| ..-+.++|+++|..+.-
T Consensus 57 ---~~~~~ll~~~~iD~V~Iatp~~~H~e~~~~AL~aGkhVl~EKPla~t~~e-----a~~l~~~a~~~~~~l~v~~~~R 128 (342)
T COG0673 57 ---TDLEELLADPDIDAVYIATPNALHAELALAALEAGKHVLCEKPLALTLEE-----AEELVELARKAGVKLMVGFNRR 128 (342)
T ss_pred ---CCHHHHhcCCCCCEEEEcCCChhhHHHHHHHHhcCCEEEEcCCCCCCHHH-----HHHHHHHHHHcCCceeeehhhh
Confidence 2335566677899999999999999999999999986642 2223 23456777777654332
Q ss_pred cccchhhHHHhhcCCCCCccceEEEEeeCCCCCCCChhhhccCCHHHHhcCCCCCCCcccccchhhhhhhhHhHhH-hhh
Q 013846 224 ADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSATLFNKGLEVIE-AHY 302 (435)
Q Consensus 224 VDSEHsAIfQ~L~g~~~~~v~kIiLTASGGPFr~~~~e~L~~vT~~dALkHP~W~MG~KITIDSATmmNKgLEvIE-A~~ 302 (435)
=|.-+.++-++|......+|..+..+.+..... .-..+.|.+..+-.= +.++..|.-.|- ++|
T Consensus 129 f~p~~~~~k~li~~g~lG~v~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~g--G~l~d~giH~lD~~~~ 192 (342)
T COG0673 129 FDPAVQALKELIDSGALGEVVSVQASFSRDRPN--------------PPPPPWWRFDRADGG--GALLDLGIHDLDLLRF 192 (342)
T ss_pred cCHHHHHHHHHHhcCCcCceEEEEEEeeccccc--------------cCCccceecccccCC--CchhhhHHHHHHHHHH
Confidence 244555555666554555566555554443221 122344544443222 466777766554 689
Q ss_pred hcCC-CCCceEEEEcCC--------cceeEEEEecCCcEEEe
Q 013846 303 LFGA-EYDNIEIIIHPQ--------SIIHSMVETQDSSVIGQ 335 (435)
Q Consensus 303 LF~i-~~d~I~vvIHPq--------SiIHsmVef~DGSv~Aq 335 (435)
|||- ++..+.+..+.+ -..+.+.+|.||.+-..
T Consensus 193 l~G~~~~~~v~a~~~~~~~~~~~~~d~~~~~l~~~~g~~~~~ 234 (342)
T COG0673 193 LLGSPEPVSVSAKARNSPPGEAGVDDSASAILRFENGVLAVS 234 (342)
T ss_pred HcCCcchhheeeecccCCCCcccccceEEEEEEecCCceEEE
Confidence 9998 577888877643 45788888888554443
No 23
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=97.09 E-value=0.0077 Score=60.51 Aligned_cols=90 Identities=21% Similarity=0.262 Sum_probs=62.1
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCC-HHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEEe
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSN-ITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N-~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~~ 155 (435)
-||+|+|+ |.||+..+.-+.+. +.+++++++...- .+.+ +.++++.- ....
T Consensus 2 lrVAIIG~-G~IG~~h~~~ll~~-~~~elvaV~d~d~es~~l-a~A~~~Gi-------------------------~~~~ 53 (285)
T TIGR03215 2 VKVAIIGS-GNIGTDLMYKLLRS-EHLEMVAMVGIDPESDGL-ARARELGV-------------------------KTSA 53 (285)
T ss_pred cEEEEEeC-cHHHHHHHHHHHhC-CCcEEEEEEeCCcccHHH-HHHHHCCC-------------------------CEEE
Confidence 37999996 99999886555554 4699999876422 1222 23444431 1111
Q ss_pred chhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCcee
Q 013846 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (435)
Q Consensus 156 G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ia 196 (435)
++..++.+++++|.|+.+.....-..-..+++++||.+.
T Consensus 54 --~~~e~ll~~~dIDaV~iaTp~~~H~e~a~~al~aGk~VI 92 (285)
T TIGR03215 54 --EGVDGLLANPDIDIVFDATSAKAHARHARLLAELGKIVI 92 (285)
T ss_pred --CCHHHHhcCCCCCEEEECCCcHHHHHHHHHHHHcCCEEE
Confidence 223444456789999999999999999999999999873
No 24
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=97.00 E-value=0.0097 Score=60.32 Aligned_cols=185 Identities=18% Similarity=0.129 Sum_probs=101.2
Q ss_pred EEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh-CCCEEEE-cCcchHHHHHHHHhcCCCCceEEec
Q 013846 79 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF-KPQVVAV-RNESLLDEIKEALANVEEKPEILAG 156 (435)
Q Consensus 79 I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f-~P~~v~v-~~e~~~~~l~~~l~~~~~~~~v~~G 156 (435)
|.|+|+ |.+|+.+++.+.++++..+|+ .+++|.+++.+.+.++ .++.-.+ .|-. .
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~--va~r~~~~~~~~~~~~~~~~~~~~~~d~~--------------------~ 57 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFEEVT--VADRNPEKAERLAEKLLGDRVEAVQVDVN--------------------D 57 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE-EEE--EEESSHHHHHHHHT--TTTTEEEEE--TT--------------------T
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCCcEE--EEECCHHHHHHHHhhccccceeEEEEecC--------------------C
Confidence 789999 999999999999986633333 4578999998888764 2333322 1111 2
Q ss_pred hhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCceee-cccceeeeccccchHHhhhcCCeEee---ccc---chh
Q 013846 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIAL-ANKETLIAGGPFVLPLAHKHNIKILP---ADS---EHS 229 (435)
Q Consensus 157 ~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaL-ANKESLV~aG~lv~~~a~~~~~~IiP---VDS---EHs 229 (435)
.+.|.++++ +.|+|||+.-.+.+..-..+|+++|....= +. +...=.-+.+.+++.|..+++ .|+ .+-
T Consensus 58 ~~~l~~~~~--~~dvVin~~gp~~~~~v~~~~i~~g~~yvD~~~---~~~~~~~l~~~a~~~g~~~l~~~G~~PGl~~~~ 132 (386)
T PF03435_consen 58 PESLAELLR--GCDVVINCAGPFFGEPVARACIEAGVHYVDTSY---VTEEMLALDEEAKEAGVTALPGCGFDPGLSNLL 132 (386)
T ss_dssp HHHHHHHHT--TSSEEEE-SSGGGHHHHHHHHHHHT-EEEESS----HHHHHHHCHHHHHHTTSEEE-S-BTTTBHHHHH
T ss_pred HHHHHHHHh--cCCEEEECCccchhHHHHHHHHHhCCCeeccch---hHHHHHHHHHHHHhhCCEEEeCcccccchHHHH
Confidence 344666665 369999999888888889999999987544 01 011112334567778888775 333 222
Q ss_pred hH--HHhhcCCCCCccceEEEEeeCCCCCCCChhh---hccCCHHHHhcC-----CCCCCCcccccchhhhhh
Q 013846 230 AI--FQCIQGLPEGALRRIILTASGGAFRDWPVEK---LKEVKVADALKH-----PNWSMGKKITVDSATLFN 292 (435)
Q Consensus 230 AI--fQ~L~g~~~~~v~kIiLTASGGPFr~~~~e~---L~~vT~~dALkH-----P~W~MG~KITIDSATmmN 292 (435)
|- .|.|.+ ....++.+.+...|-|.=.++... --.-+++..|.. ..|.-|+.+.++..+...
T Consensus 133 a~~~~~~~~~-~~~~v~~~~~~~g~~~~p~~~~~~~~~~~~ws~~~~l~e~~~~~~~~~~G~~~~v~~~~~~~ 204 (386)
T PF03435_consen 133 ARYAADELDA-EGDEVESVDIYVGGLPAPEAPDNPLGYKFTWSPEGVLEEYSPPARVYRDGKWVEVPPFSEEE 204 (386)
T ss_dssp HHHHHHHHHH-TTHEEEEEEEEEEEEEEGCG--TTTSEEBSS-HHHHHHHHCS-EEEEETTEEEEEETTTTCC
T ss_pred HHHHHHHhhh-hcccceEEEEEEccccCCCCCCCCcccceeeeehhhHHhhcccceEeeCCEEEEecCccccc
Confidence 21 122221 223577777665555111111111 112233333332 247777777777666444
No 25
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=96.94 E-value=0.0016 Score=56.19 Aligned_cols=35 Identities=40% Similarity=0.768 Sum_probs=32.7
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCC
Q 013846 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSN 113 (435)
Q Consensus 78 ~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N 113 (435)
||+|+|+||.+|+..++.+.+||+ |+++.+.++++
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~-~e~~~~~~~~~ 35 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPD-FELVALVSSSR 35 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTST-EEEEEEEESTT
T ss_pred CEEEECCCCHHHHHHHHHHhcCCC-ccEEEeeeecc
Confidence 799999999999999999999876 99999998887
No 26
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=96.90 E-value=0.0056 Score=62.84 Aligned_cols=127 Identities=18% Similarity=0.182 Sum_probs=87.9
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEEe
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~~ 155 (435)
+.||+|+|+ |+ |..-++.+++.|++++++|+.. ++.+...+.+++|.-.. +
T Consensus 3 ~~rVgViG~-~~-G~~h~~al~~~~~~~eLvaV~d-~~~erA~~~A~~~gi~~--------y------------------ 53 (343)
T TIGR01761 3 VQSVVVCGT-RF-GQFYLAAFAAAPERFELAGILA-QGSERSRALAHRLGVPL--------Y------------------ 53 (343)
T ss_pred CcEEEEEeH-HH-HHHHHHHHHhCCCCcEEEEEEc-CCHHHHHHHHHHhCCCc--------c------------------
Confidence 468999999 75 9999999999988899999886 46788888888886321 1
Q ss_pred chhHHHHHhcCCCCCEEEEe--cccccCcHHHHHHHHcCCceeecccceeeeccccchHHhhhcCCeEeecccchhhHHH
Q 013846 156 GEQGVIEAARHPDAVTVVTG--IVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQ 233 (435)
Q Consensus 156 G~egl~~l~~~~~~D~Vv~A--IvG~aGL~pt~~Ai~~gK~iaLANKESLV~aG~lv~~~a~~~~~~IiPVDSEHsAIfQ 233 (435)
..+.++....++|.|... ..+..+-.-+.+|+++||.|.. =|=.-+.-+.-+.++|+++|..+. | ..++--++
T Consensus 54 --~~~eell~d~Di~~V~ipt~~P~~~H~e~a~~aL~aGkHVL~-EKPla~~Ea~el~~~A~~~g~~l~-v-~~f~p~~~ 128 (343)
T TIGR01761 54 --CEVEELPDDIDIACVVVRSAIVGGQGSALARALLARGIHVLQ-EHPLHPRDIQDLLRLAERQGRRYL-V-NTFYPHLP 128 (343)
T ss_pred --CCHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHhCCCeEEE-cCCCCHHHHHHHHHHHHHcCCEEE-E-EecCHHHH
Confidence 223344445566666663 3477888999999999988753 111112334566788888887766 4 34555555
Q ss_pred hhc
Q 013846 234 CIQ 236 (435)
Q Consensus 234 ~L~ 236 (435)
.++
T Consensus 129 ~vr 131 (343)
T TIGR01761 129 AVR 131 (343)
T ss_pred HHH
Confidence 554
No 27
>PRK10206 putative oxidoreductase; Provisional
Probab=96.84 E-value=0.088 Score=53.32 Aligned_cols=201 Identities=18% Similarity=0.255 Sum_probs=119.5
Q ss_pred CeeEEEEecCChHhHH-HHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEE
Q 013846 76 PKPISVLGSTGSIGTQ-TLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~q-tLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~ 154 (435)
|-||+|+|. |.|+.. -+..+.+.+++++|+|++.. |-+. .+.+.+|.- +.++
T Consensus 1 ~irvgiiG~-G~~~~~~h~~~~~~~~~~~~l~av~d~-~~~~-~~~~~~~~~------------------------~~~~ 53 (344)
T PRK10206 1 VINCAFIGF-GKSTTRYHLPYVLNRKDSWHVAHIFRR-HAKP-EEQAPIYSH------------------------IHFT 53 (344)
T ss_pred CeEEEEECC-CHHHhheehhhHhcCCCCEEEEEEEcC-ChhH-HHHHHhcCC------------------------Cccc
Confidence 458999997 666653 46766666778999998765 3332 244444421 0111
Q ss_pred echhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCceeeccccee--eeccccchHHhhhcCCeEeec-----ccc
Q 013846 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETL--IAGGPFVLPLAHKHNIKILPA-----DSE 227 (435)
Q Consensus 155 ~G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLANKESL--V~aG~lv~~~a~~~~~~IiPV-----DSE 227 (435)
+.+.++.+.+++|.|+.+..=..=..-+.+|+++||.|.+ -|=.- +.-..-+.++++++|..+..- +..
T Consensus 54 ---~~~~ell~~~~iD~V~I~tp~~~H~~~~~~al~aGkhVl~-EKPla~~~~ea~~l~~~a~~~~~~l~v~~~~R~~p~ 129 (344)
T PRK10206 54 ---SDLDEVLNDPDVKLVVVCTHADSHFEYAKRALEAGKNVLV-EKPFTPTLAEAKELFALAKSKGLTVTPYQNRRFDSC 129 (344)
T ss_pred ---CCHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHcCCcEEE-ecCCcCCHHHHHHHHHHHHHhCCEEEEEEeeeECHH
Confidence 3345666777899999988877778889999999998865 33322 122455677888988776532 344
Q ss_pred hhhHHHhhcCCCCCccceEEEEeeCCCCCCCChhhhccCCHHHHhcCCCCCCCcccccchhhhhhhhHhHhH-hhhhcCC
Q 013846 228 HSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSATLFNKGLEVIE-AHYLFGA 306 (435)
Q Consensus 228 HsAIfQ~L~g~~~~~v~kIiLTASGGPFr~~~~e~L~~vT~~dALkHP~W~MG~KITIDSATmmNKgLEvIE-A~~LF~i 306 (435)
+..+-++|+.....+|..+ .+.=+.+|..+. ..|.+ -+.+.|++-|--.|- +.||||
T Consensus 130 ~~~~k~li~~g~iG~i~~i--~~~~~~~~~~~~------------~~~~~-------~~gG~l~d~g~H~ld~~~~l~G- 187 (344)
T PRK10206 130 FLTAKKAIESGKLGEIVEV--ESHFDYYRPVAE------------TKPGL-------PQDGAFYGLGVHTMDQIISLFG- 187 (344)
T ss_pred HHHHHHHHHcCCCCCeEEE--EEEecccCCccc------------cccCC-------CCCceeechhHHHHHHHHHHcC-
Confidence 5566677765444555443 333223332110 01212 123345555544444 578999
Q ss_pred CCCceEEEEc-------CCcceeEEEEecC
Q 013846 307 EYDNIEIIIH-------PQSIIHSMVETQD 329 (435)
Q Consensus 307 ~~d~I~vvIH-------PqSiIHsmVef~D 329 (435)
+++.+..... .+-..+.+++|.+
T Consensus 188 ~~~~v~a~~~~~~~~~~~~d~~~~~l~f~~ 217 (344)
T PRK10206 188 RPDHVAYDIRSLRNKANPDDTFEAQLFYGD 217 (344)
T ss_pred CCeEEEEEeecccCCCCCCceEEEEEEeCC
Confidence 4566655442 2346788889943
No 28
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=96.80 E-value=0.0099 Score=52.81 Aligned_cols=37 Identities=27% Similarity=0.350 Sum_probs=30.5
Q ss_pred EEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHH
Q 013846 79 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLAD 119 (435)
Q Consensus 79 I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~ 119 (435)
|+|+|+||.||+..++-+.+.+ ++|.+++ +|-+++.+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~--~~V~~~~--R~~~~~~~ 37 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG--HEVTALV--RSPSKAED 37 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT--SEEEEEE--SSGGGHHH
T ss_pred eEEECCCChHHHHHHHHHHHCC--CEEEEEe--cCchhccc
Confidence 7899999999999999998875 9999998 44445444
No 29
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=96.79 E-value=0.0026 Score=64.61 Aligned_cols=94 Identities=15% Similarity=0.208 Sum_probs=59.0
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEE
Q 013846 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (435)
Q Consensus 75 ~~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~ 154 (435)
+|+||+|+|+||.+|+..++.+.++|+ +++++++.++...+. ..+..|....+. ...+.
T Consensus 1 ~m~kVaIiGAtG~vG~~l~~~L~~~p~-~elv~v~~~~~~g~~---l~~~~~~~~~~~-----------------~~~~~ 59 (343)
T PRK00436 1 MMIKVGIVGASGYTGGELLRLLLNHPE-VEIVAVTSRSSAGKP---LSDVHPHLRGLV-----------------DLVLE 59 (343)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHcCCC-ceEEEEECccccCcc---hHHhCccccccc-----------------Cceee
Confidence 357999999999999999999999874 899998875432211 111112111000 00010
Q ss_pred echhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCc
Q 013846 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD 194 (435)
Q Consensus 155 ~G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ 194 (435)
..+ +.. ..++|+|+.+...-.-.....+++++|+.
T Consensus 60 -~~~---~~~-~~~vD~Vf~alP~~~~~~~v~~a~~aG~~ 94 (343)
T PRK00436 60 -PLD---PEI-LAGADVVFLALPHGVSMDLAPQLLEAGVK 94 (343)
T ss_pred -cCC---HHH-hcCCCEEEECCCcHHHHHHHHHHHhCCCE
Confidence 111 111 24589999988887777777778888874
No 30
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=96.72 E-value=0.0068 Score=68.54 Aligned_cols=215 Identities=16% Similarity=0.150 Sum_probs=119.5
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCC--------ceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcC
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHED--------KFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANV 147 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd--------~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~ 147 (435)
.-+|+|+| .|.||+..++++.++.+ +++|++++..+ -.+ ++|+-+ + ...+.+.+...
T Consensus 458 ~i~i~l~G-~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s~-~~~-------~~~~gi---~---~~~~~~~~~~~ 522 (810)
T PRK09466 458 RIGLVLFG-KGNIGSRWLELFAREQSTLSARTGFEFVLVGVVDSR-RSL-------LNYDGL---D---ASRALAFFDDE 522 (810)
T ss_pred eEEEEEEe-cCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEeCC-ccc-------cCccCC---C---HHHHHhhHHhh
Confidence 35899999 79999999999987643 58889986433 211 122211 1 11111111110
Q ss_pred CCCceEEechhHHHHHhcCCC--CCEEEEecccccCcHHHHHHHHcCCceeecccce---eeeccccchHHhhhcCCeE-
Q 013846 148 EEKPEILAGEQGVIEAARHPD--AVTVVTGIVGCAGLKPTVAAIEAGKDIALANKET---LIAGGPFVLPLAHKHNIKI- 221 (435)
Q Consensus 148 ~~~~~v~~G~egl~~l~~~~~--~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLANKES---LV~aG~lv~~~a~~~~~~I- 221 (435)
... ...+.+.+.....+ .++||....|-........||++||.|-.|||.. ...-++-++++|+++|+.+
T Consensus 523 ~~~----~~~~~~~e~i~~~~~~~~vvVd~t~~~~~~~~~~~aL~~G~~VVtaNK~~~a~~~~~~~~l~~~a~~~~~~~~ 598 (810)
T PRK09466 523 AVE----WDEESLFLWLRAHPYDELVVLDVTASEQLALQYPDFASHGFHVISANKLAGSSPSNFYRQIKDAFAKTGRHWL 598 (810)
T ss_pred cCC----ccHHHHHHHHhhcCCCCcEEEECCCChHHHHHHHHHHHcCCEEEcCCcccccccHHHHHHHHHHHHHcCCeEE
Confidence 001 12344555554333 4699999988766666679999999999999984 3467778889999998875
Q ss_pred --------eecccchhhHHHhhc-CCCCCccceEEEEeeCCCCCCCChhhhccCCHHHHhcCCCCCCC-----cccccch
Q 013846 222 --------LPADSEHSAIFQCIQ-GLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMG-----KKITVDS 287 (435)
Q Consensus 222 --------iPVDSEHsAIfQ~L~-g~~~~~v~kIiLTASGGPFr~~~~e~L~~vT~~dALkHP~W~MG-----~KITIDS 287 (435)
+||- +.|=.+++ | ++|.+|.=-=||=-=+ .....-+..+.+|||+. -..+| +.--||-
T Consensus 599 yEasV~~giPii---~~l~~l~~~g---d~i~~i~GIlnGT~ny-i~~~~~~g~~f~eal~~-Aq~~GyaE~DP~~Dl~G 670 (810)
T PRK09466 599 YNATVGAGLPIN---HTVRDLRNSG---DSILAISGIFSGTLSW-LFLQFDGSVPFSELVDQ-AWQQGLTEPDPRDDLSG 670 (810)
T ss_pred EeceeeeccChH---HHHHHHHhcc---CcEEEEEEEEccHHHH-HHHHHhcCCCHHHHHHH-HHHcCCCCCCCcccccc
Confidence 4773 23322222 3 2354443222221000 11112267888888863 12222 2223333
Q ss_pred hhhhhhhHhHhHhhhhcCCC--CCceEEE-EcCCcc
Q 013846 288 ATLFNKGLEVIEAHYLFGAE--YDNIEII-IHPQSI 320 (435)
Q Consensus 288 ATmmNKgLEvIEA~~LF~i~--~d~I~vv-IHPqSi 320 (435)
--...|. +|=|+. ||.+ +++|++- +-|+.|
T Consensus 671 ~D~a~Kl--~ILa~~-~g~~~~~~dv~~~~l~p~~i 703 (810)
T PRK09466 671 RDVMRKL--VILARE-AGYEIEPDDVRVESLVPAHL 703 (810)
T ss_pred HHHHHHH--HHHHHH-hCCCCChheEEEeecCCccc
Confidence 3334444 345555 5655 5555543 335555
No 31
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=96.65 E-value=0.003 Score=64.94 Aligned_cols=121 Identities=26% Similarity=0.296 Sum_probs=82.9
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCC--------ceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcC
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHED--------KFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANV 147 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd--------~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~ 147 (435)
+-+|+|+| .|-||...+++++++.+ .++|++++.++ ..+.. .+.... ...++...
T Consensus 3 ~v~v~l~G-~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~-~~~~~----~~~~~~--------~~~~~~~~--- 65 (333)
T COG0460 3 TVKVGLLG-LGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRD-GSLVR----DLDLLN--------AEVWTTDG--- 65 (333)
T ss_pred eEEEEEEc-cCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEecc-chhcc----cccccc--------hhhheecc---
Confidence 34899998 68899999999999755 66777776543 22211 111100 00011100
Q ss_pred CCCceEEechhHHHHHhcCCCCCEEEEeccc-ccCc---HHHHHHHHcCCceeecccceeeeccccchHHhhhcCCeE
Q 013846 148 EEKPEILAGEQGVIEAARHPDAVTVVTGIVG-CAGL---KPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKI 221 (435)
Q Consensus 148 ~~~~~v~~G~egl~~l~~~~~~D~Vv~AIvG-~aGL---~pt~~Ai~~gK~iaLANKESLV~aG~lv~~~a~~~~~~I 221 (435)
..- ++ .+++...++|+||.++.| +..= .-...|+++||.|--|||--|-.-|.-|++.|+++|+.+
T Consensus 66 ----~~~---~~-~~~~~~~~~dvvve~~~~d~~~~~~~~~~~~al~~GkhVVTaNK~~lA~~~~el~~~A~~~g~~l 135 (333)
T COG0460 66 ----ALS---LG-DEVLLDEDIDVVVELVGGDVEPAEPADLYLKALENGKHVVTANKALLALHYHELREAAEKNGVKL 135 (333)
T ss_pred ----ccc---cc-HhhhccccCCEEEecCcccCCchhhHHHHHHHHHcCCeEECCCchHhHhhHHHHHHHHHHhCCeE
Confidence 000 11 335566789999999998 4433 467789999999999999999999999999999998776
No 32
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=96.63 E-value=0.012 Score=59.88 Aligned_cols=159 Identities=14% Similarity=0.202 Sum_probs=97.6
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHH-HHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEEe
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNIT-LLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~-~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~~ 155 (435)
.||+|+| ||.||+.-+.-+.+. +.+++++++.. |.+ ...+.++++.-.. .+
T Consensus 5 lrVAIIG-tG~IGt~hm~~l~~~-~~velvAVvdi-d~es~gla~A~~~Gi~~------------------------~~- 56 (302)
T PRK08300 5 LKVAIIG-SGNIGTDLMIKILRS-EHLEPGAMVGI-DPESDGLARARRLGVAT------------------------SA- 56 (302)
T ss_pred CeEEEEc-CcHHHHHHHHHHhcC-CCcEEEEEEeC-ChhhHHHHHHHHcCCCc------------------------cc-
Confidence 4899999 999999867666664 56999998865 333 2224466554211 11
Q ss_pred chhHHHHHhcC---CCCCEEEEecccccCcHHHHHHHHcCCceeecccceeeeccccchHHhh------hcCCeEeec-c
Q 013846 156 GEQGVIEAARH---PDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAH------KHNIKILPA-D 225 (435)
Q Consensus 156 G~egl~~l~~~---~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLANKESLV~aG~lv~~~a~------~~~~~IiPV-D 225 (435)
+++.++.++ +++|+|+.+.....-..-...++++||.+. -||=.- .|+++-+... ..+..++-. .
T Consensus 57 --~~ie~LL~~~~~~dIDiVf~AT~a~~H~e~a~~a~eaGk~VI-D~sPA~--~~PlvVP~VN~~~~~~~~~~~iia~p~ 131 (302)
T PRK08300 57 --EGIDGLLAMPEFDDIDIVFDATSAGAHVRHAAKLREAGIRAI-DLTPAA--IGPYCVPAVNLDEHLDAPNVNMVTCGG 131 (302)
T ss_pred --CCHHHHHhCcCCCCCCEEEECCCHHHHHHHHHHHHHcCCeEE-ECCccc--cCCcccCcCCHHHHhcccCCCEEECcc
Confidence 223333344 689999999999888899999999998653 444443 4566644221 122333311 2
Q ss_pred cchhhHHHhhcCCCCCccceEEEE---eeCCCCCCCChhhhccCCH
Q 013846 226 SEHSAIFQCIQGLPEGALRRIILT---ASGGAFRDWPVEKLKEVKV 268 (435)
Q Consensus 226 SEHsAIfQ~L~g~~~~~v~kIiLT---ASGGPFr~~~~e~L~~vT~ 268 (435)
.--..+...|.-....+..+|+-| .|=||.+.--.|||..-|-
T Consensus 132 ~ati~~v~Al~~v~~~~~~eIvat~~s~s~g~gtr~nidE~~~~t~ 177 (302)
T PRK08300 132 QATIPIVAAVSRVAPVHYAEIVASIASKSAGPGTRANIDEFTETTS 177 (302)
T ss_pred HHHHHHHHHhcccCcCceeeeeeeehhhccCCcccccHHHHHHHHH
Confidence 222233333433333456788832 4569998788888876553
No 33
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=96.58 E-value=0.014 Score=59.63 Aligned_cols=110 Identities=20% Similarity=0.177 Sum_probs=72.5
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEEe
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~~ 155 (435)
|.||+|+|. |.||+..++.+.++| .|+|+|+... +.+.....++++.-+. ....+...+ .+.+ .++.+.
T Consensus 1 ~ikVaI~G~-GrIGr~va~al~~~~-d~eLvav~d~-~~~~~~~la~~~G~~~-~~~~~~~~~----~~~~--~~i~V~- 69 (341)
T PRK04207 1 MIKVGVNGY-GTIGKRVADAVAAQP-DMELVGVAKT-KPDYEARVAVEKGYPL-YVADPEREK----AFEE--AGIPVA- 69 (341)
T ss_pred CeEEEEECC-CHHHHHHHHHHhcCC-CcEEEEEECC-ChHHHHHHHHhcCCCc-cccCccccc----cccC--CceEEc-
Confidence 468999999 999999999999875 5999999874 4566666666553221 111111110 0100 122232
Q ss_pred chhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCceeeccc
Q 013846 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANK 200 (435)
Q Consensus 156 G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLANK 200 (435)
|. +.++. .++|+|+.+.....+..-...++++||.+..-.-
T Consensus 70 ~~--~~el~--~~vDVVIdaT~~~~~~e~a~~~~~aGk~VI~~~~ 110 (341)
T PRK04207 70 GT--IEDLL--EKADIVVDATPGGVGAKNKELYEKAGVKAIFQGG 110 (341)
T ss_pred CC--hhHhh--ccCCEEEECCCchhhHHHHHHHHHCCCEEEEcCC
Confidence 22 33443 3699999999999999989999999987766553
No 34
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=96.56 E-value=0.01 Score=55.21 Aligned_cols=98 Identities=21% Similarity=0.246 Sum_probs=60.6
Q ss_pred EEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEEec--
Q 013846 79 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG-- 156 (435)
Q Consensus 79 I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~~G-- 156 (435)
|+|+|+||.+|.+.++.+.+ ..|+|.+|+-..+ ....++.+... -.++..|-...+.|.++|.+.+. +-+..+
T Consensus 1 I~V~GatG~~G~~v~~~L~~--~~~~V~~l~R~~~-~~~~~~l~~~g-~~vv~~d~~~~~~l~~al~g~d~-v~~~~~~~ 75 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLS--AGFSVRALVRDPS-SDRAQQLQALG-AEVVEADYDDPESLVAALKGVDA-VFSVTPPS 75 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHH--TTGCEEEEESSSH-HHHHHHHHHTT-TEEEES-TT-HHHHHHHHTTCSE-EEEESSCS
T ss_pred CEEECCccHHHHHHHHHHHh--CCCCcEEEEeccc-hhhhhhhhccc-ceEeecccCCHHHHHHHHcCCce-EEeecCcc
Confidence 78999999999999999999 6799999985543 33444444443 44557777777778887765331 111222
Q ss_pred -------hhHHHHHhcCCCCCEEEEecccccC
Q 013846 157 -------EQGVIEAARHPDAVTVVTGIVGCAG 181 (435)
Q Consensus 157 -------~egl~~l~~~~~~D~Vv~AIvG~aG 181 (435)
...+.+.+....++.+|-.-.|...
T Consensus 76 ~~~~~~~~~~li~Aa~~agVk~~v~ss~~~~~ 107 (233)
T PF05368_consen 76 HPSELEQQKNLIDAAKAAGVKHFVPSSFGADY 107 (233)
T ss_dssp CCCHHHHHHHHHHHHHHHT-SEEEESEESSGT
T ss_pred hhhhhhhhhhHHHhhhccccceEEEEEecccc
Confidence 1234455554556777655555444
No 35
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=96.49 E-value=0.032 Score=58.32 Aligned_cols=157 Identities=20% Similarity=0.281 Sum_probs=107.5
Q ss_pred cCCCCCCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHh-hCCCEEEEcCcchHHHHHHHHhcCC
Q 013846 70 RKTWDGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR-FKPQVVAVRNESLLDEIKEALANVE 148 (435)
Q Consensus 70 ~~~~~~~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~-f~P~~v~v~~e~~~~~l~~~l~~~~ 148 (435)
|.....|-||.++|| |.-|+-.+.-+.+-| .++|+|++. .|++...+..++ +-|+.-++ +......+..++..
T Consensus 11 Raa~G~PiRVGlIGA-G~mG~~ivtQi~~m~-Gm~vvaisd-~~~~~ak~A~~~ag~~~~~~~-e~~~~s~~a~Ai~a-- 84 (438)
T COG4091 11 RAAEGKPIRVGLIGA-GEMGTGIVTQIASMP-GMEVVAISD-RNLDAAKRAYDRAGGPKIEAV-EADDASKMADAIEA-- 84 (438)
T ss_pred HhccCCceEEEEecc-cccchHHHHHHhhcC-CceEEEEec-ccchHHHHHHHHhcCCccccc-ccchhhHHHHHHhc--
Confidence 344467889999997 778888888887665 599999885 477777666653 45554333 22223344444432
Q ss_pred CCceEEechhHHHHHhcCCCCCEEEEecccc--cCcHHHHHHHHcCCceeecccceeeeccccchHHhhhcCCeEe-ecc
Q 013846 149 EKPEILAGEQGVIEAARHPDAVTVVTGIVGC--AGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKIL-PAD 225 (435)
Q Consensus 149 ~~~~v~~G~egl~~l~~~~~~D~Vv~AIvG~--aGL~pt~~Ai~~gK~iaLANKESLV~aG~lv~~~a~~~~~~Ii-PVD 225 (435)
.++ ...++ ...+...+.+|+||.| +|. .|-+-.+.||.+||-|-+-|=|.=|+=|+++++.|.+.|+-.- ---
T Consensus 85 GKi-~vT~D--~~~i~~~~~IdvIIdA-TG~p~vGA~~~l~Ai~h~KHlVMmNVEaDvtIGp~Lk~~Ad~~GviyS~~~G 160 (438)
T COG4091 85 GKI-AVTDD--AELIIANDLIDVIIDA-TGVPEVGAKIALEAILHGKHLVMMNVEADVTIGPILKQQADAAGVIYSGGAG 160 (438)
T ss_pred CcE-EEecc--hhhhhcCCcceEEEEc-CCCcchhhHhHHHHHhcCCeEEEEEeeeceeecHHHHHHHhhcCeEEeccCC
Confidence 122 23333 3445667789999988 455 3567789999999999999999999999999999998884332 223
Q ss_pred cchhhHHHhhc
Q 013846 226 SEHSAIFQCIQ 236 (435)
Q Consensus 226 SEHsAIfQ~L~ 236 (435)
-|-+++-.+.+
T Consensus 161 DeP~~~mEL~e 171 (438)
T COG4091 161 DEPSSCMELYE 171 (438)
T ss_pred CCcHHHHHHHH
Confidence 45566655543
No 36
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=96.32 E-value=0.01 Score=57.94 Aligned_cols=91 Identities=21% Similarity=0.248 Sum_probs=62.9
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEEe
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~~ 155 (435)
|.||+|+|+||-+|+..++.+.++|+ ++|+++..... +... ++ .+ .++.+
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~-~elvav~d~~~-~~~~----~~-~~---------------------~~i~~-- 50 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAED-LELVAAVDRPG-SPLV----GQ-GA---------------------LGVAI-- 50 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCC-CEEEEEEecCC-cccc----cc-CC---------------------CCccc--
Confidence 35899999999999999999988765 99999875443 2211 11 00 01111
Q ss_pred chhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCceeecc
Q 013846 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALAN 199 (435)
Q Consensus 156 G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLAN 199 (435)
.+.+.++.+ ++|+|++...--....-...|+++||.+.+.+
T Consensus 51 -~~dl~~ll~--~~DvVid~t~p~~~~~~~~~al~~G~~vvigt 91 (257)
T PRK00048 51 -TDDLEAVLA--DADVLIDFTTPEATLENLEFALEHGKPLVIGT 91 (257)
T ss_pred -cCCHHHhcc--CCCEEEECCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 123444443 58999988777777888999999999988653
No 37
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=96.22 E-value=0.022 Score=64.48 Aligned_cols=129 Identities=19% Similarity=0.191 Sum_probs=86.0
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCC-------ceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcC
Q 013846 75 GPKPISVLGSTGSIGTQTLDIVAEHED-------KFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANV 147 (435)
Q Consensus 75 ~~k~I~IlGSTGSIG~qtLdVi~~~pd-------~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~ 147 (435)
.+.+|+|+| .|.||.+.++++.+..+ +++|++++..+. . .++|+-+ + ...+.+.+...
T Consensus 464 ~~~~i~l~G-~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~s~~-~-------~~~~~g~---~---~~~~~~~~~~~ 528 (819)
T PRK09436 464 QVLDVFVIG-VGGVGGALLEQIKRQQPWLKKKNIDLRVCGIANSRK-M-------LLDEHGI---D---LDNWREELAEA 528 (819)
T ss_pred ccccEEEEe-cCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcCCc-c-------ccCCCCC---C---HHHHHHHHhhc
Confidence 456899999 79999999999987653 577888764321 1 1222211 1 12233322211
Q ss_pred CCCceEEechhHHHHHhcC--CCCCEEEEecccccCcHHHHHHHHcCCceeecccceee---eccccchHHhhhcCCeEe
Q 013846 148 EEKPEILAGEQGVIEAARH--PDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLI---AGGPFVLPLAHKHNIKIL 222 (435)
Q Consensus 148 ~~~~~v~~G~egl~~l~~~--~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLANKESLV---~aG~lv~~~a~~~~~~Ii 222 (435)
. -..+.+.+.+.... ...|+||....+..-..-..+|+++||.|-.|||-.+. .-++-++++|+++|+.+.
T Consensus 529 ~----~~~~~~~~~~~~~~~~~~~~vvvd~t~~~~~~~~~~~al~~g~~VVtaNK~~~a~~~~~~~el~~~a~~~~~~~~ 604 (819)
T PRK09436 529 G----EPFDLDRLIRLVKEYHLLNPVIVDCTSSQAVADQYADFLAAGFHVVTPNKKANTSSYAYYHQLREAARKSRRKFL 604 (819)
T ss_pred c----CCCCHHHHHHHHhhcCCCCCEEEECCCChHHHHHHHHHHHcCCEEEcCCchhccCCHHHHHHHHHHHHHcCCeEE
Confidence 0 11234555555432 35799999998865455556999999999999999887 367888999999998875
No 38
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=96.18 E-value=0.027 Score=55.37 Aligned_cols=98 Identities=14% Similarity=0.155 Sum_probs=62.4
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEEec
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~~G 156 (435)
.||+|+|++|-+|+..++.+.++| +++++++..+.+.+...+ ...++... ...++.++
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~-~~elvav~d~~~~~~~~~----------------~~~~~~~~---~~~gv~~~-- 59 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAE-GLQLVAAFERHGSSLQGT----------------DAGELAGI---GKVGVPVT-- 59 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCC-CCEEEEEEecCCccccCC----------------CHHHhcCc---CcCCceee--
Confidence 479999999999999999999885 599999887555432110 01111100 00112222
Q ss_pred hhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCceeecc
Q 013846 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALAN 199 (435)
Q Consensus 157 ~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLAN 199 (435)
+.+.++ . .++|+||....=.+...-...|+++|+.+...-
T Consensus 60 -~d~~~l-~-~~~DvVIdfT~p~~~~~~~~~al~~g~~vVigt 99 (266)
T TIGR00036 60 -DDLEAV-E-TDPDVLIDFTTPEGVLNHLKFALEHGVRLVVGT 99 (266)
T ss_pred -CCHHHh-c-CCCCEEEECCChHHHHHHHHHHHHCCCCEEEEC
Confidence 223444 2 458999998766666666788889888877643
No 39
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=95.88 E-value=0.025 Score=57.66 Aligned_cols=34 Identities=18% Similarity=0.479 Sum_probs=29.5
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEecc
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG 111 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~ 111 (435)
+||+|+|+||.+|...++.+.+||+ ++++++.+.
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~-~el~~l~~s 34 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPE-VEITYLVSS 34 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCC-ceEEEEecc
Confidence 3799999999999999999999975 899987443
No 40
>PLN02700 homoserine dehydrogenase family protein
Probab=95.62 E-value=0.098 Score=54.75 Aligned_cols=56 Identities=25% Similarity=0.185 Sum_probs=46.4
Q ss_pred CCCCCEEEEecccccCcHHHHHHHHcCCceeecccceeeeccccchHHhhhcCCeEe
Q 013846 166 HPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKIL 222 (435)
Q Consensus 166 ~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLANKESLV~aG~lv~~~a~~~~~~Ii 222 (435)
....+++|+...+..-......|+++|+.|-.|||-.+...++.++++++ ++++++
T Consensus 107 ~~~~~ViVD~T~s~~~~~~y~~aL~~G~hVVTaNK~~~a~~~~~~~~la~-~~~~~~ 162 (377)
T PLN02700 107 KSTGLVVVDCSASMETIGALNEAVDLGCCIVLANKKPLTSTLEDYDKLAA-HPRRIR 162 (377)
T ss_pred ccCCCEEEECCCChHHHHHHHHHHHCCCeEEcCCchHhccCHHHHHHHHH-cCCeEE
Confidence 33469999999886666677889999999999999999999999888875 566654
No 41
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=95.34 E-value=0.026 Score=57.56 Aligned_cols=56 Identities=13% Similarity=0.194 Sum_probs=41.0
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh-CCCEEEEcC
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF-KPQVVAVRN 133 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f-~P~~v~v~~ 133 (435)
|.||+|+|+||.+|...++++.+|| .|+++++++.+..+. ..--..| +.+.|+.+-
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~hp-~~~l~~~~s~~~~~~-~~~~~~~~~~DvvFlal 58 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGRS-DIELLSIPEAKRKDA-AARRELLNAADVAILCL 58 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcCC-CeEEEEEecCCCCcc-cCchhhhcCCCEEEECC
Confidence 4589999999999999999999999 599999987654332 1111122 357777743
No 42
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=95.28 E-value=0.19 Score=46.53 Aligned_cols=64 Identities=20% Similarity=0.187 Sum_probs=44.6
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEE-cCcchHHHHHH
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAV-RNESLLDEIKE 142 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v-~~e~~~~~l~~ 142 (435)
.|+|.|.|+||.||..+.+-+.+. .++|+.+. ++..+.+.++.++...+...+ .|-...+.+..
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~~--G~~vi~~~-r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 69 (248)
T TIGR01832 5 GKVALVTGANTGLGQGIAVGLAEA--GADIVGAG-RSEPSETQQQVEALGRRFLSLTADLSDIEAIKA 69 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC--CCEEEEEc-CchHHHHHHHHHhcCCceEEEECCCCCHHHHHH
Confidence 478999999999999999998875 57787765 444566777777766554433 44444444444
No 43
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=95.18 E-value=0.022 Score=59.19 Aligned_cols=39 Identities=28% Similarity=0.509 Sum_probs=34.0
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCH
Q 013846 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNI 114 (435)
Q Consensus 75 ~~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~ 114 (435)
.++||+|+|+||.+|...++++.+|| .++|+.++.+++.
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP-~~el~~l~s~~sa 75 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHP-DFEITVMTADRKA 75 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCC-CCeEEEEEChhhc
Confidence 56699999999999999999999997 5899999876443
No 44
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=95.15 E-value=0.043 Score=56.33 Aligned_cols=38 Identities=32% Similarity=0.444 Sum_probs=32.4
Q ss_pred eeEEEEecCChHhHHHHHHHHh--CCCceEEEEEeccCCHH
Q 013846 77 KPISVLGSTGSIGTQTLDIVAE--HEDKFRVVALAAGSNIT 115 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~--~pd~f~VvaLaa~~N~~ 115 (435)
.+|+|+||||-+|...++++.+ ||. +++..++..++..
T Consensus 5 ~~vaIvGATG~vG~ellrlL~~~~hP~-~~l~~laS~~saG 44 (336)
T PRK08040 5 WNIALLGATGAVGEALLELLAERQFPV-GELYALASEESAG 44 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhcCCCCc-eEEEEEEccCcCC
Confidence 4899999999999999999999 775 8999997765443
No 45
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=95.00 E-value=0.19 Score=46.32 Aligned_cols=44 Identities=27% Similarity=0.458 Sum_probs=33.5
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f 124 (435)
+++.|+|+||.||..+...+.++. .+|+.+ ++|.+++.+.+.++
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g--~~V~l~--~R~~~~~~~l~~~l 72 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREG--ARVVLV--GRDLERAQKAADSL 72 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC--CEEEEE--cCCHHHHHHHHHHH
Confidence 689999999999999988888753 466654 46777776665544
No 46
>PRK08219 short chain dehydrogenase; Provisional
Probab=94.99 E-value=0.13 Score=46.66 Aligned_cols=40 Identities=13% Similarity=0.123 Sum_probs=31.1
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHH
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQ 120 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q 120 (435)
+|++.|.|+||+||....+.+.+. ++|+++. +|.+.+.+.
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~---~~V~~~~--r~~~~~~~~ 42 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT---HTLLLGG--RPAERLDEL 42 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh---CCEEEEe--CCHHHHHHH
Confidence 578999999999999999988875 6787775 455554443
No 47
>PLN02778 3,5-epimerase/4-reductase
Probab=94.87 E-value=0.088 Score=51.85 Aligned_cols=52 Identities=21% Similarity=0.181 Sum_probs=40.9
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEec-cCCHHHHHHHHHhhCCCEEE
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA-GSNITLLADQVKRFKPQVVA 130 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa-~~N~~~L~~q~~~f~P~~v~ 130 (435)
+||.|+|+||+||....+-+.+. .++|+.... ..+.+.+....++.+|++|.
T Consensus 10 ~kiLVtG~tGfiG~~l~~~L~~~--g~~V~~~~~~~~~~~~v~~~l~~~~~D~Vi 62 (298)
T PLN02778 10 LKFLIYGKTGWIGGLLGKLCQEQ--GIDFHYGSGRLENRASLEADIDAVKPTHVF 62 (298)
T ss_pred CeEEEECCCCHHHHHHHHHHHhC--CCEEEEecCccCCHHHHHHHHHhcCCCEEE
Confidence 57999999999999999988876 456665433 35667777777788999987
No 48
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=94.79 E-value=0.061 Score=55.62 Aligned_cols=36 Identities=22% Similarity=0.576 Sum_probs=29.7
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceE---EEEEeccCC
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFR---VVALAAGSN 113 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~---VvaLaa~~N 113 (435)
.+|+|+|+||.+|...++++.+||+ |+ +..++..++
T Consensus 6 ~~VaIvGATG~vG~ell~lL~~h~~-f~v~~l~~~aS~~s 44 (347)
T PRK06728 6 YHVAVVGATGAVGQKIIELLEKETK-FNIAEVTLLSSKRS 44 (347)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHCCC-CCcccEEEEECccc
Confidence 4799999999999999999998876 77 656665443
No 49
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=94.73 E-value=0.32 Score=45.57 Aligned_cols=84 Identities=14% Similarity=0.102 Sum_probs=52.0
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEE-cCcchHHHHHHHHhcCCCCceEEe
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAV-RNESLLDEIKEALANVEEKPEILA 155 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v-~~e~~~~~l~~~l~~~~~~~~v~~ 155 (435)
++|.|.|+||.||....+-+.++ .++|++++ +|.+.+.+...+..++...+ .|-...+.+++.+.
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~--G~~V~~~~--r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~---------- 66 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQ--GHKVIATG--RRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLA---------- 66 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHC--CCEEEEEE--CCHHHHHHHHHHhccceEEEEecCCCHHHHHHHHH----------
Confidence 36999999999999999998876 57777654 45666665555554443332 34344444443321
Q ss_pred chhHHHHHhcCCCCCEEEEecccc
Q 013846 156 GEQGVIEAARHPDAVTVVTGIVGC 179 (435)
Q Consensus 156 G~egl~~l~~~~~~D~Vv~AIvG~ 179 (435)
.+.+ ...+.|.|+++....
T Consensus 67 ---~~~~--~~~~id~vi~~ag~~ 85 (248)
T PRK10538 67 ---SLPA--EWRNIDVLVNNAGLA 85 (248)
T ss_pred ---HHHH--HcCCCCEEEECCCcc
Confidence 1111 124689999886543
No 50
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=94.73 E-value=0.32 Score=45.66 Aligned_cols=65 Identities=14% Similarity=0.116 Sum_probs=44.9
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEE-cCcchHHHHHH
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAV-RNESLLDEIKE 142 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v-~~e~~~~~l~~ 142 (435)
.|++.|.|+||.||.++.+-+.+. .++|+.+.-+++.+.+.+...+...+...+ .|-...+.++.
T Consensus 15 ~k~vlItGas~gIG~~ia~~l~~~--G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~ 80 (258)
T PRK06935 15 GKVAIVTGGNTGLGQGYAVALAKA--GADIIITTHGTNWDETRRLIEKEGRKVTFVQVDLTKPESAEK 80 (258)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCEEEEEeCCcHHHHHHHHHHhcCCceEEEEcCCCCHHHHHH
Confidence 378999999999999999999875 677877765566677777666655443332 34444444443
No 51
>PRK12829 short chain dehydrogenase; Provisional
Probab=94.64 E-value=0.43 Score=44.43 Aligned_cols=84 Identities=17% Similarity=0.135 Sum_probs=50.3
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCC--EEEEcCcchHHHHHHHHhcCCCCceE
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQ--VVAVRNESLLDEIKEALANVEEKPEI 153 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~--~v~v~~e~~~~~l~~~l~~~~~~~~v 153 (435)
.|++.|.|+||.||..+.+-+.++ .++|+.+. +|-+.+.+...++.-. .+...|-...+.+++.+.
T Consensus 11 ~~~vlItGa~g~iG~~~a~~L~~~--g~~V~~~~--r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-------- 78 (264)
T PRK12829 11 GLRVLVTGGASGIGRAIAEAFAEA--GARVHVCD--VSEAALAATAARLPGAKVTATVADVADPAQVERVFD-------- 78 (264)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHHHHhcCceEEEEccCCCHHHHHHHHH--------
Confidence 378999999999999999999876 56776655 3445555444444221 233344444444444321
Q ss_pred EechhHHHHHhcCCCCCEEEEeccc
Q 013846 154 LAGEQGVIEAARHPDAVTVVTGIVG 178 (435)
Q Consensus 154 ~~G~egl~~l~~~~~~D~Vv~AIvG 178 (435)
.+.+. ..++|.|++....
T Consensus 79 -----~~~~~--~~~~d~vi~~ag~ 96 (264)
T PRK12829 79 -----TAVER--FGGLDVLVNNAGI 96 (264)
T ss_pred -----HHHHH--hCCCCEEEECCCC
Confidence 11111 2368999988543
No 52
>PRK08267 short chain dehydrogenase; Provisional
Probab=94.64 E-value=0.36 Score=45.28 Aligned_cols=46 Identities=28% Similarity=0.269 Sum_probs=36.1
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhC
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFK 125 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~ 125 (435)
||++.|.|+||.||....+-+.+. .++|+.+. +|.+.+.+...+..
T Consensus 1 mk~vlItGasg~iG~~la~~l~~~--G~~V~~~~--r~~~~~~~~~~~~~ 46 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAAE--GWRVGAYD--INEAGLAALAAELG 46 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHC--CCeEEEEe--CCHHHHHHHHHHhc
Confidence 688999999999999999988875 56787764 56777766655543
No 53
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=94.62 E-value=0.32 Score=50.10 Aligned_cols=34 Identities=29% Similarity=0.437 Sum_probs=28.7
Q ss_pred CCCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 013846 74 DGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (435)
Q Consensus 74 ~~~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLa 109 (435)
..+++|.|+|+||.||....+-+.+. .++|++++
T Consensus 58 ~~~~kVLVtGatG~IG~~l~~~Ll~~--G~~V~~l~ 91 (390)
T PLN02657 58 PKDVTVLVVGATGYIGKFVVRELVRR--GYNVVAVA 91 (390)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEE
Confidence 34568999999999999999988765 68899886
No 54
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=94.58 E-value=0.11 Score=51.20 Aligned_cols=53 Identities=25% Similarity=0.417 Sum_probs=42.1
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEecc----CCHHHHHHHHHhhCCCEEEEc
Q 013846 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG----SNITLLADQVKRFKPQVVAVR 132 (435)
Q Consensus 78 ~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~----~N~~~L~~q~~~f~P~~v~v~ 132 (435)
||.|+|+||.||......+.+ ..++|+++.-. .+.+.+.+..++++|++|.-.
T Consensus 2 riLI~GasG~lG~~l~~~l~~--~~~~v~~~~r~~~dl~d~~~~~~~~~~~~pd~Vin~ 58 (286)
T PF04321_consen 2 RILITGASGFLGSALARALKE--RGYEVIATSRSDLDLTDPEAVAKLLEAFKPDVVINC 58 (286)
T ss_dssp EEEEETTTSHHHHHHHHHHTT--TSEEEEEESTTCS-TTSHHHHHHHHHHH--SEEEE-
T ss_pred EEEEECCCCHHHHHHHHHHhh--CCCEEEEeCchhcCCCCHHHHHHHHHHhCCCeEecc
Confidence 799999999999999999887 46899998432 367888888999999998754
No 55
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=94.51 E-value=0.38 Score=44.60 Aligned_cols=53 Identities=17% Similarity=0.182 Sum_probs=36.7
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHH---HHHHhhCCCEEE
Q 013846 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLA---DQVKRFKPQVVA 130 (435)
Q Consensus 75 ~~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~---~q~~~f~P~~v~ 130 (435)
++|+|.|.|+||.||......+.+. .++|+. +..+|.+.+. ++++++.++...
T Consensus 1 m~k~ilItGas~giG~~la~~l~~~--g~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (248)
T PRK06947 1 MRKVVLITGASRGIGRATAVLAAAR--GWSVGI-NYARDAAAAEETADAVRAAGGRACV 56 (248)
T ss_pred CCcEEEEeCCCCcHHHHHHHHHHHC--CCEEEE-EeCCCHHHHHHHHHHHHhcCCcEEE
Confidence 3689999999999999999998876 567754 3455665544 344444444443
No 56
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=94.51 E-value=0.47 Score=46.30 Aligned_cols=90 Identities=18% Similarity=0.130 Sum_probs=68.7
Q ss_pred HHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCceeecccceeeec-----cccchHHhhhcCCeEeecccchhhHHHh
Q 013846 160 VIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAG-----GPFVLPLAHKHNIKILPADSEHSAIFQC 234 (435)
Q Consensus 160 l~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLANKESLV~a-----G~lv~~~a~~~~~~IiPVDSEHsAIfQ~ 234 (435)
+.+++. +++|.|+.+..=.+=-.-+..++++||.+.. |+..+- ..-+.++++++|.++..- |-+-+..+.
T Consensus 30 ~~eLl~-~~vDaVviatp~~~H~e~a~~aL~aGkhVl~---~s~gAlad~e~~~~l~~aA~~~g~~l~i~-sGai~g~d~ 104 (229)
T TIGR03855 30 FDEFLP-EDVDIVVEAASQEAVKEYAEKILKNGKDLLI---MSVGALADRELRERLREVARSSGRKVYIP-SGAIGGLDA 104 (229)
T ss_pred HHHHhc-CCCCEEEECCChHHHHHHHHHHHHCCCCEEE---ECCcccCCHHHHHHHHHHHHhcCCEEEEC-hHHHHHHHH
Confidence 344544 4699999998877778889999999999988 555432 334667889998877644 777778899
Q ss_pred hcCCCCCccceEEEEeeCCC
Q 013846 235 IQGLPEGALRRIILTASGGA 254 (435)
Q Consensus 235 L~g~~~~~v~kIiLTASGGP 254 (435)
|+......++.+.+|..=.|
T Consensus 105 l~a~~ig~~~~V~i~~~k~p 124 (229)
T TIGR03855 105 LKAASLGRIERVVLTTTKPP 124 (229)
T ss_pred HHhcccCCceEEEEEEecCh
Confidence 98777778999999976544
No 57
>PRK07806 short chain dehydrogenase; Provisional
Probab=94.45 E-value=0.53 Score=43.63 Aligned_cols=65 Identities=18% Similarity=0.142 Sum_probs=39.3
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccC--CHHHHHHHHHhhCCCEEE-EcCcchHHHHHH
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGS--NITLLADQVKRFKPQVVA-VRNESLLDEIKE 142 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~--N~~~L~~q~~~f~P~~v~-v~~e~~~~~l~~ 142 (435)
.|++.|.|+||.||....+-+.+. .++|++++-+. +.+.+.+..+....+... ..|-...+.++.
T Consensus 6 ~k~vlItGasggiG~~l~~~l~~~--G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~ 73 (248)
T PRK07806 6 GKTALVTGSSRGIGADTAKILAGA--GAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAA 73 (248)
T ss_pred CcEEEEECCCCcHHHHHHHHHHHC--CCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHH
Confidence 378999999999999999988875 57787764321 223333334443333322 234444444443
No 58
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=94.44 E-value=0.11 Score=49.22 Aligned_cols=52 Identities=21% Similarity=0.382 Sum_probs=40.6
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEecc----CCHHHHHHHHHhhCCCEEEE
Q 013846 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG----SNITLLADQVKRFKPQVVAV 131 (435)
Q Consensus 78 ~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~----~N~~~L~~q~~~f~P~~v~v 131 (435)
||.|+|+||+||....+-+.+. .++|++++-. .+.+.+.+..+..+|++|+-
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~--g~~v~~~~r~~~d~~~~~~~~~~~~~~~~d~vi~ 56 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPE--GRVVVALTSSQLDLTDPEALERLLRAIRPDAVVN 56 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhc--CCEEEEeCCcccCCCCHHHHHHHHHhCCCCEEEE
Confidence 5899999999999999998875 6888887542 35566766677777888764
No 59
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=94.33 E-value=0.34 Score=44.82 Aligned_cols=83 Identities=22% Similarity=0.220 Sum_probs=50.9
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHH---HHHhhCCCEEEE-cCcchHHHHHHHHhcCCCCc
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLAD---QVKRFKPQVVAV-RNESLLDEIKEALANVEEKP 151 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~---q~~~f~P~~v~v-~~e~~~~~l~~~l~~~~~~~ 151 (435)
.|++.|.|+||.||....+-+.++ .++|+.+.. +|.+.+.+ +++....+...+ .|-...+.++..+.
T Consensus 4 ~~~vlItGa~g~iG~~~a~~l~~~--g~~v~~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 74 (250)
T PRK08063 4 GKVALVTGSSRGIGKAIALRLAEE--GYDIAVNYA-RSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFA------ 74 (250)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCEEEEEcC-CCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHH------
Confidence 368999999999999999999887 566765433 44454444 444444444433 45444455554432
Q ss_pred eEEechhHHHHHhcCCCCCEEEEec
Q 013846 152 EILAGEQGVIEAARHPDAVTVVTGI 176 (435)
Q Consensus 152 ~v~~G~egl~~l~~~~~~D~Vv~AI 176 (435)
.+.+ ....+|+|++..
T Consensus 75 -------~~~~--~~~~id~vi~~a 90 (250)
T PRK08063 75 -------QIDE--EFGRLDVFVNNA 90 (250)
T ss_pred -------HHHH--HcCCCCEEEECC
Confidence 1111 123589999874
No 60
>PRK07326 short chain dehydrogenase; Provisional
Probab=94.27 E-value=0.54 Score=43.14 Aligned_cols=44 Identities=16% Similarity=0.259 Sum_probs=34.0
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f 124 (435)
++|.|+|+||.||.....-+.++ .++|+++. +|-+.+.+..++.
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~--g~~V~~~~--r~~~~~~~~~~~l 50 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAE--GYKVAITA--RDQKELEEAAAEL 50 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHC--CCEEEEee--CCHHHHHHHHHHH
Confidence 68999999999999999998875 67887764 5556655555544
No 61
>PRK06101 short chain dehydrogenase; Provisional
Probab=94.25 E-value=0.35 Score=45.14 Aligned_cols=65 Identities=22% Similarity=0.203 Sum_probs=42.3
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHH
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEAL 144 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l 144 (435)
|+++.|.|+||.||.+..+-+.+. .++|+.+ .+|.+.+.+...+...-.+...|-...+.+++.+
T Consensus 1 ~~~vlItGas~giG~~la~~L~~~--G~~V~~~--~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 65 (240)
T PRK06101 1 MTAVLITGATSGIGKQLALDYAKQ--GWQVIAC--GRNQSVLDELHTQSANIFTLAFDVTDHPGTKAAL 65 (240)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhC--CCEEEEE--ECCHHHHHHHHHhcCCCeEEEeeCCCHHHHHHHH
Confidence 578999999999999988888765 5777665 3577777666554322222234444455555443
No 62
>PRK07024 short chain dehydrogenase; Provisional
Probab=94.23 E-value=0.64 Score=43.76 Aligned_cols=45 Identities=16% Similarity=0.197 Sum_probs=35.2
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f 124 (435)
+|+|.|.|+||.||++..+.+.+. .++|+.+ .+|.+.+.+...+.
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~--G~~v~~~--~r~~~~~~~~~~~~ 46 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQ--GATLGLV--ARRTDALQAFAARL 46 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHC--CCEEEEE--eCCHHHHHHHHHhc
Confidence 578999999999999999999886 5677654 35677776666554
No 63
>PRK12828 short chain dehydrogenase; Provisional
Probab=94.15 E-value=0.47 Score=43.13 Aligned_cols=41 Identities=22% Similarity=0.336 Sum_probs=31.0
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHH
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQ 120 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q 120 (435)
.|+|.|.|+||+||....+-+.+. .++|++++ +|.+.+.+.
T Consensus 7 ~k~vlItGatg~iG~~la~~l~~~--G~~v~~~~--r~~~~~~~~ 47 (239)
T PRK12828 7 GKVVAITGGFGGLGRATAAWLAAR--GARVALIG--RGAAPLSQT 47 (239)
T ss_pred CCEEEEECCCCcHhHHHHHHHHHC--CCeEEEEe--CChHhHHHH
Confidence 468999999999999999988776 67777765 444444333
No 64
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.99 E-value=0.5 Score=43.02 Aligned_cols=85 Identities=19% Similarity=0.141 Sum_probs=49.7
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHH---HHHHHHhhCCCEEEE-cCcchHHHHHHHHhcCCCC
Q 013846 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITL---LADQVKRFKPQVVAV-RNESLLDEIKEALANVEEK 150 (435)
Q Consensus 75 ~~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~---L~~q~~~f~P~~v~v-~~e~~~~~l~~~l~~~~~~ 150 (435)
.+|+|.|.|+||.||.+..+-+.+. .++|+.++ +++.+. +.+...+..++...+ .|-...+.+++.+.
T Consensus 5 ~~~~vlItGasg~iG~~l~~~l~~~--g~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~----- 76 (249)
T PRK12825 5 MGRVALVTGAARGLGRAIALRLARA--GADVVVHY-RSDEEAAEELVEAVEALGRRAQAVQADVTDKAALEAAVA----- 76 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHC--CCeEEEEe-CCCHHHHHHHHHHHHhcCCceEEEECCcCCHHHHHHHHH-----
Confidence 3579999999999999999988875 45665544 334433 444444444443332 34444444444331
Q ss_pred ceEEechhHHHHHhcCCCCCEEEEecc
Q 013846 151 PEILAGEQGVIEAARHPDAVTVVTGIV 177 (435)
Q Consensus 151 ~~v~~G~egl~~l~~~~~~D~Vv~AIv 177 (435)
++.+ ...++|.|++...
T Consensus 77 --------~~~~--~~~~id~vi~~ag 93 (249)
T PRK12825 77 --------AAVE--RFGRIDILVNNAG 93 (249)
T ss_pred --------HHHH--HcCCCCEEEECCc
Confidence 1111 1246899988643
No 65
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=93.96 E-value=0.1 Score=53.87 Aligned_cols=205 Identities=19% Similarity=0.238 Sum_probs=103.4
Q ss_pred CeeEEEEecCChHhHHHHHHHHh-CCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEE
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAE-HEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~-~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~ 154 (435)
+++|+|+|+||.+|+..++.+.+ |+.-=++..++..++..+ +..+|.=+.+.+-
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~---~~~~f~~~~~~v~---------------------- 55 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGK---KYIEFGGKSIGVP---------------------- 55 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCC---ccccccCccccCc----------------------
Confidence 46899999999999999999998 766333555544444331 1223322111110
Q ss_pred echhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCceeecccceeeeccccchHHhhhcCCeEe--ecccchhhHH
Q 013846 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKIL--PADSEHSAIF 232 (435)
Q Consensus 155 ~G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLANKESLV~aG~lv~~~a~~~~~~Ii--PVDSEHsAIf 232 (435)
+...++....++|+|+++.-|-..-+---++.++|..+ +-|.-. + ..+..+.|+ +|-.||-.=+
T Consensus 56 ---~~~~~~~~~~~~Divf~~ag~~~s~~~~p~~~~~G~~V-IdnsSa------~----Rm~~DVPLVVPeVN~~~l~~~ 121 (334)
T COG0136 56 ---EDAADEFVFSDVDIVFFAAGGSVSKEVEPKAAEAGCVV-IDNSSA------F----RMDPDVPLVVPEVNPEHLIDY 121 (334)
T ss_pred ---cccccccccccCCEEEEeCchHHHHHHHHHHHHcCCEE-EeCCcc------c----ccCCCCCEecCCcCHHHHHhh
Confidence 11111222337999999987766655555666666322 222111 0 011233333 5666663323
Q ss_pred HhhcC--------------------CCCCccceEEEE----eeCCCCCCCChhhhccCCHHHHhcCCCCCCCcccc----
Q 013846 233 QCIQG--------------------LPEGALRRIILT----ASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKIT---- 284 (435)
Q Consensus 233 Q~L~g--------------------~~~~~v~kIiLT----ASGGPFr~~~~e~L~~vT~~dALkHP~W~MG~KIT---- 284 (435)
|- +| ++...|++|++| +||.=+. +.++|.+.+-+.=-.+|.=.-|.-|-
T Consensus 122 ~~-rg~IianpNCst~~l~~aL~PL~~~~~i~~v~VsTyQAvSGAG~~--~~~el~~q~~~~~~~~~i~~~~~~iAfNvi 198 (334)
T COG0136 122 QK-RGFIIANPNCSTIQLVLALKPLHDAFGIKRVVVSTYQAVSGAGAE--GGVELAGQTDALLNGIPILPIGYPLAFNVI 198 (334)
T ss_pred hh-CCCEEECCChHHHHHHHHHHHHHhhcCceEEEEEEeehhhhcCcc--chhhHHHHHhhhccCccccccccccccccc
Confidence 31 12 122458899887 6887663 34445554443111111111011111
Q ss_pred --cchhhhhhhhH------hHhHhhhhcCCCCCceEEEEcCCcceeEE
Q 013846 285 --VDSATLFNKGL------EVIEAHYLFGAEYDNIEIIIHPQSIIHSM 324 (435)
Q Consensus 285 --IDSATmmNKgL------EvIEA~~LF~i~~d~I~vvIHPqSiIHsm 324 (435)
||.-. --|. =.=|.+.+|+-+.-+|.+--|+==+.|+.
T Consensus 199 P~I~~~~--~ng~t~EE~K~~~Et~KIlg~~~~~VsatcvRVPV~~GH 244 (334)
T COG0136 199 PHIDGFL--DNGYTKEEWKIEAETRKILGDPDIKVSATCVRVPVFYGH 244 (334)
T ss_pred ccCCccc--cCCccHHHHHHHHHHHHHhCCCCCceEEEEEEcceeccc
Confidence 12100 0011 13478888887777777776665555554
No 66
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=93.96 E-value=0.9 Score=41.45 Aligned_cols=64 Identities=19% Similarity=0.144 Sum_probs=39.4
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHH---HHhhCCCEEEE-cCcchHHHHHH
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQ---VKRFKPQVVAV-RNESLLDEIKE 142 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q---~~~f~P~~v~v-~~e~~~~~l~~ 142 (435)
.|+|.|.|+||.||....+-+.+. .++|+.++.+ ..+.+.+. .+....++..+ .|-...+.+++
T Consensus 5 ~~~vlItG~sg~iG~~l~~~l~~~--G~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 72 (248)
T PRK05557 5 GKVALVTGASRGIGRAIAERLAAQ--GANVVINYAS-SEAGAEALVAEIGALGGKALAVQGDVSDAESVER 72 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC--CCEEEEEeCC-chhHHHHHHHHHHhcCCceEEEEcCCCCHHHHHH
Confidence 478999999999999999998875 6777666543 33333333 33333444433 34444444444
No 67
>PRK12742 oxidoreductase; Provisional
Probab=93.94 E-value=0.49 Score=43.41 Aligned_cols=50 Identities=14% Similarity=0.098 Sum_probs=36.5
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCE
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQV 128 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~ 128 (435)
.|+|.|.|+||.||..+...+.+. .++|+.+ ..++.+.+.+...+++...
T Consensus 6 ~k~vlItGasggIG~~~a~~l~~~--G~~v~~~-~~~~~~~~~~l~~~~~~~~ 55 (237)
T PRK12742 6 GKKVLVLGGSRGIGAAIVRRFVTD--GANVRFT-YAGSKDAAERLAQETGATA 55 (237)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC--CCEEEEe-cCCCHHHHHHHHHHhCCeE
Confidence 478999999999999999988875 5677654 4445666666666665443
No 68
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=93.93 E-value=0.87 Score=41.49 Aligned_cols=83 Identities=17% Similarity=0.088 Sum_probs=49.1
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHh---hCCCEEEE-cCcchHHHHHHHHhcCCCCc
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR---FKPQVVAV-RNESLLDEIKEALANVEEKP 151 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~---f~P~~v~v-~~e~~~~~l~~~l~~~~~~~ 151 (435)
+|+|.|.|+||.||....+.+.++ .++|++++ +|-+.+.+...+ ...+...+ .|-...+.+...+.
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~~~--g~~v~~~~--r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 74 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAAD--GAKVVIYD--SNEEAAEALAAELRAAGGEARVLVFDVSDEAAVRALIE------ 74 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEe--CChhHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHH------
Confidence 378999999999999999998876 56665554 344444444333 33444333 34333344444331
Q ss_pred eEEechhHHHHHhcCCCCCEEEEecc
Q 013846 152 EILAGEQGVIEAARHPDAVTVVTGIV 177 (435)
Q Consensus 152 ~v~~G~egl~~l~~~~~~D~Vv~AIv 177 (435)
++.+. ...+|.|+....
T Consensus 75 -------~~~~~--~~~id~vi~~ag 91 (246)
T PRK05653 75 -------AAVEA--FGALDILVNNAG 91 (246)
T ss_pred -------HHHHH--hCCCCEEEECCC
Confidence 11111 245899998753
No 69
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=93.92 E-value=0.07 Score=54.34 Aligned_cols=33 Identities=33% Similarity=0.569 Sum_probs=29.8
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCCceEEEEE
Q 013846 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVAL 108 (435)
Q Consensus 75 ~~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaL 108 (435)
+|.||+|+|+||.||...++.+.+||+ ++++++
T Consensus 2 ~~~~V~I~GatG~iG~~l~~~L~~~p~-~el~~~ 34 (349)
T PRK08664 2 MKLKVGILGATGMVGQRFVQLLANHPW-FEVTAL 34 (349)
T ss_pred CCcEEEEECCCCHHHHHHHHHHHcCCC-ceEEEE
Confidence 357999999999999999999999876 689998
No 70
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=93.87 E-value=0.09 Score=53.72 Aligned_cols=55 Identities=13% Similarity=0.166 Sum_probs=40.6
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcC
Q 013846 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRN 133 (435)
Q Consensus 78 ~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~ 133 (435)
||+|+|+||..|...++.+.+||+ ++++.+++.++.+........-+.+.|+++-
T Consensus 3 ~v~IvGasGy~G~el~rlL~~HP~-~el~~l~s~~~~~~~~~~~~~~~~D~vFlal 57 (310)
T TIGR01851 3 KVFIDGEAGTTGLQIRERLSGRDD-IELLSIAPDRRKDAAERAKLLNAADVAILCL 57 (310)
T ss_pred eEEEECCCChhHHHHHHHHhCCCC-eEEEEEecccccCcCCHhHhhcCCCEEEECC
Confidence 799999999999999999999986 8999999887643221110101457777643
No 71
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=93.86 E-value=0.62 Score=43.33 Aligned_cols=66 Identities=15% Similarity=0.180 Sum_probs=42.0
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccC-CHHHHHHHHHhhCCCEEE-EcCcchHHHHHHH
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGS-NITLLADQVKRFKPQVVA-VRNESLLDEIKEA 143 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~-N~~~L~~q~~~f~P~~v~-v~~e~~~~~l~~~ 143 (435)
.|++.|.|+||.||..+...+.++ .++|+.+.-.. ..+.+.+++++..++... ..|-...+.+++.
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~~--G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 74 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELARA--GAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAG 74 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHH
Confidence 478999999999999999999886 45677553211 134455555555544433 3454555555543
No 72
>PRK09186 flagellin modification protein A; Provisional
Probab=93.85 E-value=0.59 Score=43.41 Aligned_cols=45 Identities=22% Similarity=0.287 Sum_probs=33.5
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f 124 (435)
.|+|.|.|+||.||....+.+.+. .++|+.++ ++.+.+.+...+.
T Consensus 4 ~k~vlItGas~giG~~~a~~l~~~--g~~v~~~~--r~~~~~~~~~~~l 48 (256)
T PRK09186 4 GKTILITGAGGLIGSALVKAILEA--GGIVIAAD--IDKEALNELLESL 48 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC--CCEEEEEe--cChHHHHHHHHHH
Confidence 378999999999999999999876 57777763 4555555444443
No 73
>PRK07060 short chain dehydrogenase; Provisional
Probab=93.84 E-value=0.57 Score=43.12 Aligned_cols=62 Identities=23% Similarity=0.156 Sum_probs=42.2
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHH
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKE 142 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~ 142 (435)
.|++.|.|+||.||..+...+.+. .++|+.++ ++.+.+.+...+++... ...|-...+.+++
T Consensus 9 ~~~~lItGa~g~iG~~~a~~l~~~--g~~V~~~~--r~~~~~~~~~~~~~~~~-~~~D~~~~~~v~~ 70 (245)
T PRK07060 9 GKSVLVTGASSGIGRACAVALAQR--GARVVAAA--RNAAALDRLAGETGCEP-LRLDVGDDAAIRA 70 (245)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHHHhCCeE-EEecCCCHHHHHH
Confidence 368999999999999999999886 56777654 56667766666655433 3334443333443
No 74
>PRK07825 short chain dehydrogenase; Provisional
Probab=93.82 E-value=0.78 Score=43.46 Aligned_cols=81 Identities=15% Similarity=0.049 Sum_probs=51.1
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhC-CCEEEEcCcchHHHHHHHHhcCCCCceEE
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFK-PQVVAVRNESLLDEIKEALANVEEKPEIL 154 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~-P~~v~v~~e~~~~~l~~~l~~~~~~~~v~ 154 (435)
.++|.|.|+||.||......+.+. .++|+.+ .+|.+.+.+..++.. ..++ ..|-...+.+.+.+
T Consensus 5 ~~~ilVtGasggiG~~la~~l~~~--G~~v~~~--~r~~~~~~~~~~~~~~~~~~-~~D~~~~~~~~~~~---------- 69 (273)
T PRK07825 5 GKVVAITGGARGIGLATARALAAL--GARVAIG--DLDEALAKETAAELGLVVGG-PLDVTDPASFAAFL---------- 69 (273)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCEEEEE--ECCHHHHHHHHHHhccceEE-EccCCCHHHHHHHH----------
Confidence 368999999999999999988875 5666654 367788777666654 3332 23434444444332
Q ss_pred echhHHHHHhcCCCCCEEEEec
Q 013846 155 AGEQGVIEAARHPDAVTVVTGI 176 (435)
Q Consensus 155 ~G~egl~~l~~~~~~D~Vv~AI 176 (435)
+.+.+. ...+|++|+..
T Consensus 70 ---~~~~~~--~~~id~li~~a 86 (273)
T PRK07825 70 ---DAVEAD--LGPIDVLVNNA 86 (273)
T ss_pred ---HHHHHH--cCCCCEEEECC
Confidence 111211 24689999863
No 75
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.80 E-value=0.79 Score=42.23 Aligned_cols=82 Identities=18% Similarity=0.152 Sum_probs=49.5
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhC--CCE-EEEcCcchHHHHHHHHhcCCCCce
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFK--PQV-VAVRNESLLDEIKEALANVEEKPE 152 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~--P~~-v~v~~e~~~~~l~~~l~~~~~~~~ 152 (435)
.|+|.|.|+||.||.+..+.+.+. .++|++++ +|.+.+.+...+.+ .+. +...|-...+.++..+.
T Consensus 5 ~~~vlItGasg~iG~~l~~~l~~~--G~~V~~~~--r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------- 73 (251)
T PRK07231 5 GKVAIVTGASSGIGEGIARRFAAE--GARVVVTD--RNEEAAERVAAEILAGGRAIAVAADVSDEADVEAAVA------- 73 (251)
T ss_pred CcEEEEECCCChHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH-------
Confidence 368999999999999999998876 56776653 44555555544433 222 22234444444444321
Q ss_pred EEechhHHHHHhcCCCCCEEEEec
Q 013846 153 ILAGEQGVIEAARHPDAVTVVTGI 176 (435)
Q Consensus 153 v~~G~egl~~l~~~~~~D~Vv~AI 176 (435)
.+. .....+|.|++..
T Consensus 74 ------~~~--~~~~~~d~vi~~a 89 (251)
T PRK07231 74 ------AAL--ERFGSVDILVNNA 89 (251)
T ss_pred ------HHH--HHhCCCCEEEECC
Confidence 111 1234689999875
No 76
>PRK06482 short chain dehydrogenase; Provisional
Probab=93.74 E-value=0.79 Score=43.51 Aligned_cols=48 Identities=19% Similarity=0.219 Sum_probs=33.8
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCC
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQ 127 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~ 127 (435)
.|++.|.|+||.||.....-+.+. ..+|+++. ++.+.+.+...++..+
T Consensus 2 ~k~vlVtGasg~IG~~la~~L~~~--g~~v~~~~--r~~~~~~~~~~~~~~~ 49 (276)
T PRK06482 2 SKTWFITGASSGFGRGMTERLLAR--GDRVAATV--RRPDALDDLKARYGDR 49 (276)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHHhccCc
Confidence 468999999999999999888775 45676654 4556555544444333
No 77
>PRK08263 short chain dehydrogenase; Provisional
Probab=93.74 E-value=0.86 Score=43.42 Aligned_cols=47 Identities=26% Similarity=0.292 Sum_probs=35.2
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCC
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKP 126 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P 126 (435)
.|+|.|.|+||.||.++.+-+.+. .++|+.+. +|.+.+.+...++..
T Consensus 3 ~k~vlItGasg~iG~~~a~~l~~~--g~~V~~~~--r~~~~~~~~~~~~~~ 49 (275)
T PRK08263 3 EKVWFITGASRGFGRAWTEAALER--GDRVVATA--RDTATLADLAEKYGD 49 (275)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHC--CCEEEEEE--CCHHHHHHHHHhccC
Confidence 468999999999999999988765 57777654 566666666555543
No 78
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=93.73 E-value=0.4 Score=47.62 Aligned_cols=32 Identities=25% Similarity=0.153 Sum_probs=28.0
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEec
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa 110 (435)
|+|.|.|+||+||....+-+.+. .++|++++-
T Consensus 5 k~ilItGatG~IG~~l~~~L~~~--G~~V~~~~r 36 (349)
T TIGR02622 5 KKVLVTGHTGFKGSWLSLWLLEL--GAEVYGYSL 36 (349)
T ss_pred CEEEEECCCChhHHHHHHHHHHC--CCEEEEEeC
Confidence 67999999999999999999875 578998863
No 79
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=93.66 E-value=0.2 Score=47.52 Aligned_cols=32 Identities=25% Similarity=0.394 Sum_probs=27.5
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 013846 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (435)
Q Consensus 78 ~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLa 109 (435)
+|.|.|+||+||...++-+.+....++|+++.
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~ 32 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLD 32 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEec
Confidence 58999999999999999887765568898875
No 80
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=93.66 E-value=0.66 Score=43.80 Aligned_cols=65 Identities=12% Similarity=0.081 Sum_probs=45.0
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEE-cCcchHHHHHHH
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAV-RNESLLDEIKEA 143 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v-~~e~~~~~l~~~ 143 (435)
.|++.|.|+||.||..+..-+.+. .++|+.+ .+++.+.+.++.++...+...+ .|-...+.+++.
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~--G~~vv~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 73 (251)
T PRK12481 8 GKVAIITGCNTGLGQGMAIGLAKA--GADIVGV-GVAEAPETQAQVEALGRKFHFITADLIQQKDIDSI 73 (251)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCEEEEe-cCchHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHH
Confidence 378999999999999999988875 6778765 4555666777777666554433 444444444443
No 81
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=93.63 E-value=0.65 Score=43.43 Aligned_cols=82 Identities=17% Similarity=0.137 Sum_probs=49.1
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh---CCCEEEE-cCcchHHHHHHHHhcCCCCc
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF---KPQVVAV-RNESLLDEIKEALANVEEKP 151 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f---~P~~v~v-~~e~~~~~l~~~l~~~~~~~ 151 (435)
.|+|.|.|+||+||....+-+.+. .++|+.+ .+|.+.+.++..+. .++...+ .|-...+.+++.+.
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~~~--G~~V~~~--~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~------ 79 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLAQA--GAEVILN--GRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAID------ 79 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHHHc--CCEEEEE--eCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHH------
Confidence 378999999999999999988875 6788765 34555554444333 3333332 34444444444331
Q ss_pred eEEechhHHHHHhcCCCCCEEEEec
Q 013846 152 EILAGEQGVIEAARHPDAVTVVTGI 176 (435)
Q Consensus 152 ~v~~G~egl~~l~~~~~~D~Vv~AI 176 (435)
.+.+ ....+|.|++..
T Consensus 80 -------~~~~--~~~~~d~li~~a 95 (255)
T PRK07523 80 -------AFEA--EIGPIDILVNNA 95 (255)
T ss_pred -------HHHH--hcCCCCEEEECC
Confidence 1111 124588898874
No 82
>PRK07454 short chain dehydrogenase; Provisional
Probab=93.58 E-value=1 Score=41.73 Aligned_cols=44 Identities=16% Similarity=0.167 Sum_probs=33.1
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHH
Q 013846 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVK 122 (435)
Q Consensus 75 ~~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~ 122 (435)
.+|++.|.|+||.||....+-+.++ .++|+.++ +|.+.+.+...
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~--G~~V~~~~--r~~~~~~~~~~ 48 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKA--GWDLALVA--RSQDALEALAA 48 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHH
Confidence 4689999999999999999998875 56777764 45555544433
No 83
>PRK05693 short chain dehydrogenase; Provisional
Probab=93.56 E-value=0.39 Score=45.67 Aligned_cols=40 Identities=18% Similarity=0.197 Sum_probs=31.4
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHH
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLAD 119 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~ 119 (435)
||++.|.|+||.||.+..+.+.+. .++|++++ +|.+.+.+
T Consensus 1 mk~vlItGasggiG~~la~~l~~~--G~~V~~~~--r~~~~~~~ 40 (274)
T PRK05693 1 MPVVLITGCSSGIGRALADAFKAA--GYEVWATA--RKAEDVEA 40 (274)
T ss_pred CCEEEEecCCChHHHHHHHHHHHC--CCEEEEEe--CCHHHHHH
Confidence 578999999999999999998875 67888765 44454443
No 84
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=93.55 E-value=0.68 Score=43.33 Aligned_cols=51 Identities=20% Similarity=0.186 Sum_probs=34.2
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCE
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQV 128 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~ 128 (435)
.|++.|.|+||.||..+.+-+.+. .++|+.+.-....+.+.++......+.
T Consensus 8 ~k~vlVtGas~gIG~~la~~l~~~--G~~v~~~~r~~~~~~~~~~~~~~~~~~ 58 (260)
T PRK12823 8 GKVVVVTGAAQGIGRGVALRAAAE--GARVVLVDRSELVHEVAAELRAAGGEA 58 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCEEEEEeCchHHHHHHHHHHhcCCeE
Confidence 478999999999999999988875 567776543222334444444444443
No 85
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=93.47 E-value=0.09 Score=47.87 Aligned_cols=38 Identities=26% Similarity=0.396 Sum_probs=31.9
Q ss_pred EEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHH
Q 013846 79 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLA 118 (435)
Q Consensus 79 I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~ 118 (435)
|.|+|+||+||....+-+.+. .++|++++.+++-+.+.
T Consensus 1 IlI~GatG~iG~~l~~~l~~~--g~~v~~~~~~~~~~~~~ 38 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKK--GHEVIVLSRSSNSESFE 38 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHT--TTEEEEEESCSTGGHHH
T ss_pred EEEEccCCHHHHHHHHHHHHc--CCccccccccccccccc
Confidence 789999999999999999886 56688998887766543
No 86
>PRK06057 short chain dehydrogenase; Provisional
Probab=93.46 E-value=0.72 Score=43.26 Aligned_cols=62 Identities=15% Similarity=0.056 Sum_probs=40.5
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHH
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKE 142 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~ 142 (435)
.|+|.|.|+||.||.+..+-+.++ .++|+.+. +|.+.+.+...++...++ ..|-...+.++.
T Consensus 7 ~~~vlItGasggIG~~~a~~l~~~--G~~v~~~~--r~~~~~~~~~~~~~~~~~-~~D~~~~~~~~~ 68 (255)
T PRK06057 7 GRVAVITGGGSGIGLATARRLAAE--GATVVVGD--IDPEAGKAAADEVGGLFV-PTDVTDEDAVNA 68 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHc--CCEEEEEe--CCHHHHHHHHHHcCCcEE-EeeCCCHHHHHH
Confidence 478999999999999999999876 57777664 455555555555543333 334333334443
No 87
>PLN02583 cinnamoyl-CoA reductase
Probab=93.43 E-value=0.45 Score=46.44 Aligned_cols=34 Identities=18% Similarity=0.318 Sum_probs=28.8
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEec
Q 013846 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (435)
Q Consensus 75 ~~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa 110 (435)
..|+|.|.|+||+||....+-+.+. .++|+++.-
T Consensus 5 ~~k~vlVTGatG~IG~~lv~~Ll~~--G~~V~~~~R 38 (297)
T PLN02583 5 SSKSVCVMDASGYVGFWLVKRLLSR--GYTVHAAVQ 38 (297)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhC--CCEEEEEEc
Confidence 3568999999999999999988875 688988763
No 88
>PRK05717 oxidoreductase; Validated
Probab=93.41 E-value=0.84 Score=42.80 Aligned_cols=48 Identities=15% Similarity=0.106 Sum_probs=34.7
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCC
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQ 127 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~ 127 (435)
.|++.|.|+||+||..+..-+.+. .++|+.+. ++.+.+.+.++++..+
T Consensus 10 ~k~vlItG~sg~IG~~~a~~l~~~--g~~v~~~~--~~~~~~~~~~~~~~~~ 57 (255)
T PRK05717 10 GRVALVTGAARGIGLGIAAWLIAE--GWQVVLAD--LDRERGSKVAKALGEN 57 (255)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHc--CCEEEEEc--CCHHHHHHHHHHcCCc
Confidence 368999999999999999988875 46777653 3455555555555433
No 89
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=93.38 E-value=0.21 Score=48.94 Aligned_cols=50 Identities=28% Similarity=0.462 Sum_probs=36.8
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEecc--------CCHHHHHHHHHhhCCCEEE
Q 013846 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG--------SNITLLADQVKRFKPQVVA 130 (435)
Q Consensus 78 ~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~--------~N~~~L~~q~~~f~P~~v~ 130 (435)
||.|.|+||+||....+-+.+.. +|+++.-. .+.+.+.+..++.+|+.|+
T Consensus 2 ~iLVtG~~GfiGs~l~~~L~~~g---~V~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~Vi 59 (299)
T PRK09987 2 NILLFGKTGQVGWELQRALAPLG---NLIALDVHSTDYCGDFSNPEGVAETVRKIRPDVIV 59 (299)
T ss_pred eEEEECCCCHHHHHHHHHhhccC---CEEEeccccccccCCCCCHHHHHHHHHhcCCCEEE
Confidence 69999999999999998776653 47776532 3445666666677788776
No 90
>PRK08265 short chain dehydrogenase; Provisional
Probab=93.35 E-value=0.82 Score=43.33 Aligned_cols=64 Identities=16% Similarity=0.070 Sum_probs=43.3
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEE-cCcchHHHHHHH
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAV-RNESLLDEIKEA 143 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v-~~e~~~~~l~~~ 143 (435)
.|++.|.|+||.||..+.+-+.+. .++|+.+ .+|.+.+.+..+++..+...+ .|-...+.+++.
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~--G~~V~~~--~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 70 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAA--GARVAIV--DIDADNGAAVAASLGERARFIATDITDDAAIERA 70 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC--CCEEEEE--eCCHHHHHHHHHHhCCeeEEEEecCCCHHHHHHH
Confidence 378999999999999999998875 5677665 356676777777665443332 344444444443
No 91
>PRK06196 oxidoreductase; Provisional
Probab=93.34 E-value=0.76 Score=45.06 Aligned_cols=45 Identities=16% Similarity=0.191 Sum_probs=34.6
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f 124 (435)
.|+|.|.|+||.||..+..-+.+. .++|+.+ .+|.+.+.+.+.+.
T Consensus 26 ~k~vlITGasggIG~~~a~~L~~~--G~~Vv~~--~R~~~~~~~~~~~l 70 (315)
T PRK06196 26 GKTAIVTGGYSGLGLETTRALAQA--GAHVIVP--ARRPDVAREALAGI 70 (315)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCEEEEE--eCCHHHHHHHHHHh
Confidence 478999999999999999988875 5677764 35667766655554
No 92
>PRK07201 short chain dehydrogenase; Provisional
Probab=93.28 E-value=0.44 Score=51.16 Aligned_cols=47 Identities=19% Similarity=0.250 Sum_probs=36.8
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh
Q 013846 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (435)
Q Consensus 78 ~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f 124 (435)
+|.|.|+||+||.+.+.-+.+++..++|++++-......+.++...+
T Consensus 2 ~ILVTGatGfIG~~lv~~Ll~~~~g~~V~~l~R~~~~~~~~~~~~~~ 48 (657)
T PRK07201 2 RYFVTGGTGFIGRRLVSRLLDRRREATVHVLVRRQSLSRLEALAAYW 48 (657)
T ss_pred eEEEeCCccHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHhc
Confidence 69999999999999999998766788999998654555555544443
No 93
>PRK08226 short chain dehydrogenase; Provisional
Probab=93.27 E-value=0.82 Score=42.87 Aligned_cols=66 Identities=20% Similarity=0.211 Sum_probs=39.7
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEE-EEcCcchHHHHHHH
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVV-AVRNESLLDEIKEA 143 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v-~v~~e~~~~~l~~~ 143 (435)
.|++.|.|+||.||.+..+-+.+. .++|+.++-..+.+.+.+..+....+.. ...|-...+.++..
T Consensus 6 ~~~~lItG~s~giG~~la~~l~~~--G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~ 72 (263)
T PRK08226 6 GKTALITGALQGIGEGIARVFARH--GANLILLDISPEIEKLADELCGRGHRCTAVVADVRDPASVAAA 72 (263)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHC--CCEEEEecCCHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHH
Confidence 478999999999999999999886 5677766533332233333333233332 23444444444443
No 94
>PRK12939 short chain dehydrogenase; Provisional
Probab=93.26 E-value=1 Score=41.50 Aligned_cols=45 Identities=16% Similarity=0.094 Sum_probs=34.0
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f 124 (435)
.|++.|.|+||.||....+.+.+. .++|+++ .++-+.+.+...++
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~~--G~~v~~~--~r~~~~~~~~~~~~ 51 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEA--GATVAFN--DGLAAEARELAAAL 51 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHc--CCEEEEE--eCCHHHHHHHHHHH
Confidence 378999999999999999999875 5677776 35566655554443
No 95
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=93.25 E-value=0.85 Score=50.39 Aligned_cols=45 Identities=24% Similarity=0.284 Sum_probs=34.2
Q ss_pred CCCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHH
Q 013846 74 DGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVK 122 (435)
Q Consensus 74 ~~~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~ 122 (435)
...|.|.|+|+||.||..+.+-+.+. .++|+++. +|.+.+.+...
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~--G~~Vval~--Rn~ekl~~l~~ 122 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKL--GFRVRAGV--RSAQRAESLVQ 122 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHC--CCeEEEEe--CCHHHHHHHHH
Confidence 34578999999999999999888775 68888764 56666654443
No 96
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=93.22 E-value=0.34 Score=53.34 Aligned_cols=112 Identities=16% Similarity=0.216 Sum_probs=63.2
Q ss_pred CeeEEEEecCChHhHHHHHHHHh-CCCceEEEEEeccCCHHHHHHHHHhhC--CCEE-EEcCcchHHHHHHHHhcCCCCc
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAE-HEDKFRVVALAAGSNITLLADQVKRFK--PQVV-AVRNESLLDEIKEALANVEEKP 151 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~-~pd~f~VvaLaa~~N~~~L~~q~~~f~--P~~v-~v~~e~~~~~l~~~l~~~~~~~ 151 (435)
-|+|.|-|+|||||..-..-+.+ +|.+..+..-.= .+...+....++.- .+.. .+.|=.+++.+...+.+ .++
T Consensus 250 gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E-~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~--~kv 326 (588)
T COG1086 250 GKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDE-YKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEG--HKV 326 (588)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCch-HHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhc--CCC
Confidence 48999999999999998765554 566655544221 12333333333321 2333 34676777778777754 345
Q ss_pred eEEechhHHHH--HhcCCCCCEEEEecccccCcHHHHHHHHcC
Q 013846 152 EILAGEQGVIE--AARHPDAVTVVTGIVGCAGLKPTVAAIEAG 192 (435)
Q Consensus 152 ~v~~G~egl~~--l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~g 192 (435)
++.+-..++.. +++.....-|-|=|-|. ..-.-+|+++|
T Consensus 327 d~VfHAAA~KHVPl~E~nP~Eai~tNV~GT--~nv~~aa~~~~ 367 (588)
T COG1086 327 DIVFHAAALKHVPLVEYNPEEAIKTNVLGT--ENVAEAAIKNG 367 (588)
T ss_pred ceEEEhhhhccCcchhcCHHHHHHHhhHhH--HHHHHHHHHhC
Confidence 56555555544 23333333444555554 33345666666
No 97
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=93.21 E-value=0.17 Score=52.89 Aligned_cols=33 Identities=24% Similarity=0.445 Sum_probs=26.6
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceE---EEEEe
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFR---VVALA 109 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~---VvaLa 109 (435)
|.+|+|+||||.+|...++.+.+||+ |. ++.++
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~~-f~~~~l~~~s 36 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEEND-FDLIEPVFFS 36 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCCC-CCcCcEEEec
Confidence 46899999999999999996676775 76 55543
No 98
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.21 E-value=1.2 Score=41.10 Aligned_cols=64 Identities=13% Similarity=0.168 Sum_probs=41.8
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEE-cCcchHHHHHHH
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAV-RNESLLDEIKEA 143 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v-~~e~~~~~l~~~ 143 (435)
|+|.|.|+||.||.++.+-+.+. .++|+.+. .++.+.+.+...++..+..++ .|-...+.+++.
T Consensus 6 k~ilItGas~gIG~~la~~l~~~--G~~vv~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 70 (253)
T PRK08642 6 QTVLVTGGSRGLGAAIARAFARE--GARVVVNY-HQSEDAAEALADELGDRAIALQADVTDREQVQAM 70 (253)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHC--CCeEEEEc-CCCHHHHHHHHHHhCCceEEEEcCCCCHHHHHHH
Confidence 68999999999999999988775 56777544 444555555555555444333 344444444443
No 99
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=93.20 E-value=0.5 Score=47.12 Aligned_cols=135 Identities=17% Similarity=0.258 Sum_probs=90.2
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEEech
Q 013846 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGE 157 (435)
Q Consensus 78 ~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~~G~ 157 (435)
+|+|+|+ |-||++.++.++..|-+|+.+++- .++.++..+..+-+.++.+.
T Consensus 2 ~vgiVGc-GaIG~~l~e~v~~~~~~~e~v~v~-D~~~ek~~~~~~~~~~~~~s--------------------------- 52 (255)
T COG1712 2 KVGIVGC-GAIGKFLLELVRDGRVDFELVAVY-DRDEEKAKELEASVGRRCVS--------------------------- 52 (255)
T ss_pred eEEEEec-cHHHHHHHHHHhcCCcceeEEEEe-cCCHHHHHHHHhhcCCCccc---------------------------
Confidence 5889986 789999999999999899998854 66788888888777765541
Q ss_pred hHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCceeecccceeeecccc--------chHHhhhcCCeEeecccchh
Q 013846 158 QGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPF--------VLPLAHKHNIKILPADSEHS 229 (435)
Q Consensus 158 egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLANKESLV~aG~l--------v~~~a~~~~~~IiPVDSEHs 229 (435)
.+.++. .++|++|.+.+=-|=......+|++|+++.... =|-| +.++++..+.++.=.-----
T Consensus 53 -~ide~~--~~~DlvVEaAS~~Av~e~~~~~L~~g~d~iV~S------VGALad~~l~erl~~lak~~~~rv~~pSGAiG 123 (255)
T COG1712 53 -DIDELI--AEVDLVVEAASPEAVREYVPKILKAGIDVIVMS------VGALADEGLRERLRELAKCGGARVYLPSGAIG 123 (255)
T ss_pred -cHHHHh--hccceeeeeCCHHHHHHHhHHHHhcCCCEEEEe------chhccChHHHHHHHHHHhcCCcEEEecCccch
Confidence 122333 468889888777676777888899998875433 2333 24577777776642111111
Q ss_pred hHHHhhcCCCCCccceEEEEee
Q 013846 230 AIFQCIQGLPEGALRRIILTAS 251 (435)
Q Consensus 230 AIfQ~L~g~~~~~v~kIiLTAS 251 (435)
+| ..|....-..|+.+.||.-
T Consensus 124 Gl-D~l~aar~g~i~~V~lttr 144 (255)
T COG1712 124 GL-DALAAARVGGIEEVVLTTR 144 (255)
T ss_pred hH-HHHHHhhcCCeeEEEEEee
Confidence 11 2222223367899999973
No 100
>PRK08643 acetoin reductase; Validated
Probab=93.19 E-value=0.94 Score=42.30 Aligned_cols=44 Identities=20% Similarity=0.225 Sum_probs=32.1
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHh
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR 123 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~ 123 (435)
.|++.|.|+||.||.++.+.+.++ .++|+.+. ++.+.+.+...+
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~--G~~v~~~~--r~~~~~~~~~~~ 45 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVED--GFKVAIVD--YNEETAQAAADK 45 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHHH
Confidence 368999999999999999999876 57777764 344444443333
No 101
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=93.16 E-value=0.58 Score=47.11 Aligned_cols=139 Identities=16% Similarity=0.169 Sum_probs=83.9
Q ss_pred CeeEEEEecCChHhHHHHHHHHhC-CCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEE
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEH-EDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~-pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~ 154 (435)
.+||+|+|. |.||+...+-+.+. .+.|+++++ ..++.+.-.+.+.. ++ ++
T Consensus 2 ~~rvgiIG~-GaIG~~va~~l~~~~~~~~~l~~V-~~~~~~~~~~~~~~--~~-------------------------~~ 52 (267)
T PRK13301 2 THRIAFIGL-GAIASDVAAGLLADAAQPCQLAAL-TRNAADLPPALAGR--VA-------------------------LL 52 (267)
T ss_pred ceEEEEECc-cHHHHHHHHHHhcCCCCceEEEEE-ecCCHHHHHHhhcc--Cc-------------------------cc
Confidence 468999997 89999998877764 456999998 44555443333322 11 11
Q ss_pred echhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCceee------cccceeeeccccchHHhhhcCCeEeecccch
Q 013846 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIAL------ANKETLIAGGPFVLPLAHKHNIKILPADSEH 228 (435)
Q Consensus 155 ~G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaL------ANKESLV~aG~lv~~~a~~~~~~IiPVDSEH 228 (435)
+.+.+++. .++|+||.+-+=-+=-......|++|+++.+ |+++. =.-+.+.|++++.+|+-- .
T Consensus 53 ---~~l~~ll~-~~~DlVVE~A~~~av~e~~~~iL~~g~dlvv~SvGALaD~~~----~~~l~~~A~~~g~~i~ip---S 121 (267)
T PRK13301 53 ---DGLPGLLA-WRPDLVVEAAGQQAIAEHAEGCLTAGLDMIICSAGALADDAL----RARLIAAAEAGGARIRVP---A 121 (267)
T ss_pred ---CCHHHHhh-cCCCEEEECCCHHHHHHHHHHHHhcCCCEEEEChhHhcCHHH----HHHHHHHHHhCCCEEEEe---C
Confidence 12344432 3588888876555445556677788888743 32221 012355777777776642 3
Q ss_pred hhH--HHhhcCCCCCccceEEEEeeCCC
Q 013846 229 SAI--FQCIQGLPEGALRRIILTASGGA 254 (435)
Q Consensus 229 sAI--fQ~L~g~~~~~v~kIiLTASGGP 254 (435)
-|| ++.|+.-....+.++.+|.--.|
T Consensus 122 GAigGlD~l~aa~~~~~~~v~~~t~K~P 149 (267)
T PRK13301 122 GAIAGLDYLQAVAGRDDAEVVYESRKPV 149 (267)
T ss_pred hHHHhHHHHHHhhccCceEEEEEEecCh
Confidence 455 35565444456778888876666
No 102
>PRK08628 short chain dehydrogenase; Provisional
Probab=93.15 E-value=0.85 Score=42.63 Aligned_cols=83 Identities=16% Similarity=0.174 Sum_probs=49.0
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEE-cCcchHHHHHHHHhcCCCCceEEe
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAV-RNESLLDEIKEALANVEEKPEILA 155 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v-~~e~~~~~l~~~l~~~~~~~~v~~ 155 (435)
|++.|.|+||.||......+.+. ..+|+.++-...-..+.+++++...+...+ .|-...+.++..+.
T Consensus 8 ~~ilItGasggiG~~la~~l~~~--G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---------- 75 (258)
T PRK08628 8 KVVIVTGGASGIGAAISLRLAEE--GAIPVIFGRSAPDDEFAEELRALQPRAEFVQVDLTDDAQCRDAVE---------- 75 (258)
T ss_pred CEEEEeCCCChHHHHHHHHHHHc--CCcEEEEcCChhhHHHHHHHHhcCCceEEEEccCCCHHHHHHHHH----------
Confidence 68999999999999999998876 456666543222224445555555554333 34333344443321
Q ss_pred chhHHHHHhcCCCCCEEEEec
Q 013846 156 GEQGVIEAARHPDAVTVVTGI 176 (435)
Q Consensus 156 G~egl~~l~~~~~~D~Vv~AI 176 (435)
.+.+ ....+|+|++..
T Consensus 76 ---~~~~--~~~~id~vi~~a 91 (258)
T PRK08628 76 ---QTVA--KFGRIDGLVNNA 91 (258)
T ss_pred ---HHHH--hcCCCCEEEECC
Confidence 1111 223688888875
No 103
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=93.13 E-value=0.23 Score=49.96 Aligned_cols=49 Identities=14% Similarity=0.250 Sum_probs=39.4
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhC
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFK 125 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~ 125 (435)
+||+|+|+||.+|..+...+...+-.++|+.+.-..+.++|..+..++.
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~ 49 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIY 49 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhh
Confidence 3799999999999999999998877778888876666677766665543
No 104
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=93.11 E-value=0.13 Score=52.12 Aligned_cols=38 Identities=26% Similarity=0.440 Sum_probs=32.2
Q ss_pred CeeEEEEecCChHhHHHHHHHHh--CCCceEEEEEeccCCH
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAE--HEDKFRVVALAAGSNI 114 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~--~pd~f~VvaLaa~~N~ 114 (435)
++||+|+|+||.+|...++.+.+ ||. +++++++..++.
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~-~~l~~l~s~~~~ 40 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPV-DKLRLLASARSA 40 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCc-ceEEEEEccccC
Confidence 45899999999999999999998 565 899999766543
No 105
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=93.11 E-value=0.49 Score=44.75 Aligned_cols=39 Identities=23% Similarity=0.336 Sum_probs=31.1
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHH
Q 013846 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLL 117 (435)
Q Consensus 75 ~~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L 117 (435)
.+++|.|+|+||.||...+.-+.+. .++|++++ +|.+.+
T Consensus 16 ~~~~ilItGasG~iG~~l~~~L~~~--g~~V~~~~--R~~~~~ 54 (251)
T PLN00141 16 KTKTVFVAGATGRTGKRIVEQLLAK--GFAVKAGV--RDVDKA 54 (251)
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhC--CCEEEEEe--cCHHHH
Confidence 3678999999999999999988775 57888875 444544
No 106
>PRK12743 oxidoreductase; Provisional
Probab=93.01 E-value=0.75 Score=43.24 Aligned_cols=64 Identities=19% Similarity=0.103 Sum_probs=41.2
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCH---HHHHHHHHhhCCCEEEE-cCcchHHHHHH
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNI---TLLADQVKRFKPQVVAV-RNESLLDEIKE 142 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~---~~L~~q~~~f~P~~v~v-~~e~~~~~l~~ 142 (435)
+|++.|.|+||.||.++...+.++ .++|+.+. .++. +.+.++.+++..+...+ .|-...+.++.
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~--G~~V~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 69 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQ--GFDIGITW-HSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQ 69 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC--CCEEEEEe-CCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHH
Confidence 578999999999999999999886 57776654 3343 34455555555444333 34333344443
No 107
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=93.00 E-value=0.22 Score=50.38 Aligned_cols=52 Identities=23% Similarity=0.424 Sum_probs=43.9
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccC----CHHHHHHHHHhhCCCEEEE
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGS----NITLLADQVKRFKPQVVAV 131 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~----N~~~L~~q~~~f~P~~v~v 131 (435)
|| |.|+|+||-.|+...+.+. ..|+|++++-.. |.+.+.+.+++.+|+.|.-
T Consensus 1 M~-iLi~G~~GqLG~~L~~~l~---~~~~v~a~~~~~~Ditd~~~v~~~i~~~~PDvVIn 56 (281)
T COG1091 1 MK-ILITGANGQLGTELRRALP---GEFEVIATDRAELDITDPDAVLEVIRETRPDVVIN 56 (281)
T ss_pred Cc-EEEEcCCChHHHHHHHHhC---CCceEEeccCccccccChHHHHHHHHhhCCCEEEE
Confidence 44 9999999999998777765 579999997654 6788999999999999874
No 108
>PRK06180 short chain dehydrogenase; Provisional
Probab=93.00 E-value=1.1 Score=42.79 Aligned_cols=50 Identities=16% Similarity=0.112 Sum_probs=37.0
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEE
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVV 129 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v 129 (435)
+|+|.|.|+||.||..+..-+.+. ..+|+++. +|.+.+.+.......+..
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~--G~~V~~~~--r~~~~~~~l~~~~~~~~~ 53 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAA--GHRVVGTV--RSEAARADFEALHPDRAL 53 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhC--cCEEEEEe--CCHHHHHHHHhhcCCCee
Confidence 578999999999999999988775 56777764 566776665555444443
No 109
>PRK06181 short chain dehydrogenase; Provisional
Probab=92.99 E-value=1 Score=42.26 Aligned_cols=41 Identities=27% Similarity=0.227 Sum_probs=30.3
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHH
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQ 120 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q 120 (435)
+++|.|.|+||.||......+.+. .++|+++. +|.+.+.+.
T Consensus 1 ~~~vlVtGasg~iG~~la~~l~~~--g~~Vi~~~--r~~~~~~~~ 41 (263)
T PRK06181 1 GKVVIITGASEGIGRALAVRLARA--GAQLVLAA--RNETRLASL 41 (263)
T ss_pred CCEEEEecCCcHHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHH
Confidence 367999999999999999888765 46788775 344444333
No 110
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=92.96 E-value=0.14 Score=51.11 Aligned_cols=35 Identities=26% Similarity=0.300 Sum_probs=29.5
Q ss_pred CCCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEec
Q 013846 74 DGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (435)
Q Consensus 74 ~~~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa 110 (435)
-.+|+|.|.|+||+||....+-+.+. .++|+++.-
T Consensus 13 ~~~~~vlVtGatGfiG~~lv~~L~~~--g~~V~~~d~ 47 (348)
T PRK15181 13 LAPKRWLITGVAGFIGSGLLEELLFL--NQTVIGLDN 47 (348)
T ss_pred ccCCEEEEECCccHHHHHHHHHHHHC--CCEEEEEeC
Confidence 33467999999999999999999876 578999864
No 111
>PRK07774 short chain dehydrogenase; Provisional
Probab=92.94 E-value=1 Score=41.75 Aligned_cols=64 Identities=23% Similarity=0.194 Sum_probs=38.8
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccC-CHHHHHHHHHhhCCCEEE-EcCcchHHHHHH
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGS-NITLLADQVKRFKPQVVA-VRNESLLDEIKE 142 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~-N~~~L~~q~~~f~P~~v~-v~~e~~~~~l~~ 142 (435)
|++.|.|+||.||.++..-+.+. .++|+.+.-.. +.+.+.+..++..++... ..|-...+.++.
T Consensus 7 k~vlItGasg~iG~~la~~l~~~--g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 72 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALARE--GASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKA 72 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHH
Confidence 67999999999999999998875 57788765321 222333333333333332 244444444443
No 112
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=92.93 E-value=0.36 Score=52.74 Aligned_cols=35 Identities=23% Similarity=0.467 Sum_probs=30.1
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEec
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa 110 (435)
+|+|.|.|+||+||...++-+.+....++|+++.-
T Consensus 6 ~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~ 40 (668)
T PLN02260 6 PKNILITGAAGFIASHVANRLIRNYPDYKIVVLDK 40 (668)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 57899999999999999998887644689998864
No 113
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=92.90 E-value=0.76 Score=46.54 Aligned_cols=95 Identities=19% Similarity=0.338 Sum_probs=64.7
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcc-hHHHHHHHHhcCCCCceEE
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNES-LLDEIKEALANVEEKPEIL 154 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~-~~~~l~~~l~~~~~~~~v~ 154 (435)
-.+|.|.|+||.+|+-++.+.+.. .+.+++.+..+ ++.. .++++..+++.-..+. ..+.+++.
T Consensus 143 g~~VLV~gaaGgVG~~aiQlAk~~--G~~~v~~~~s~--~k~~-~~~~lGAd~vi~y~~~~~~~~v~~~----------- 206 (326)
T COG0604 143 GETVLVHGAAGGVGSAAIQLAKAL--GATVVAVVSSS--EKLE-LLKELGADHVINYREEDFVEQVREL----------- 206 (326)
T ss_pred CCEEEEecCCchHHHHHHHHHHHc--CCcEEEEecCH--HHHH-HHHhcCCCEEEcCCcccHHHHHHHH-----------
Confidence 468999999999999999999987 33666666544 5555 7899999888753333 33344432
Q ss_pred echhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCcee
Q 013846 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (435)
Q Consensus 155 ~G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ia 196 (435)
..-..+|+|++.+ |-.-+...+.+++.+-++.
T Consensus 207 ---------t~g~gvDvv~D~v-G~~~~~~~l~~l~~~G~lv 238 (326)
T COG0604 207 ---------TGGKGVDVVLDTV-GGDTFAASLAALAPGGRLV 238 (326)
T ss_pred ---------cCCCCceEEEECC-CHHHHHHHHHHhccCCEEE
Confidence 2223577787774 4455666777777765544
No 114
>PRK06182 short chain dehydrogenase; Validated
Probab=92.83 E-value=1.1 Score=42.51 Aligned_cols=41 Identities=24% Similarity=0.321 Sum_probs=32.5
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHH
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQ 120 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q 120 (435)
.|+|.|.|+||.||....+.+.+. .++|++++ +|.+.+.+.
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~--G~~V~~~~--r~~~~l~~~ 43 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQ--GYTVYGAA--RRVDKMEDL 43 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHH
Confidence 478999999999999999988774 67887764 566766544
No 115
>PRK07035 short chain dehydrogenase; Provisional
Probab=92.82 E-value=1 Score=41.93 Aligned_cols=43 Identities=16% Similarity=0.200 Sum_probs=32.3
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHh
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR 123 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~ 123 (435)
|++.|.|+||.||.....-+.+. .++|+.+. +|.+.+.++.++
T Consensus 9 k~vlItGas~gIG~~l~~~l~~~--G~~Vi~~~--r~~~~~~~~~~~ 51 (252)
T PRK07035 9 KIALVTGASRGIGEAIAKLLAQQ--GAHVIVSS--RKLDGCQAVADA 51 (252)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHHH
Confidence 68999999999999999999886 56788765 345544444433
No 116
>PRK06194 hypothetical protein; Provisional
Probab=92.82 E-value=1.2 Score=42.36 Aligned_cols=63 Identities=17% Similarity=0.193 Sum_probs=40.0
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh---CCCEEEE-cCcchHHHHHH
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF---KPQVVAV-RNESLLDEIKE 142 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f---~P~~v~v-~~e~~~~~l~~ 142 (435)
+|++.|.|+||.||....+-+.+. .++|+.+. ++.+.+.+...+. ..+...+ .|-...+.+.+
T Consensus 6 ~k~vlVtGasggIG~~la~~l~~~--G~~V~~~~--r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~ 72 (287)
T PRK06194 6 GKVAVITGAASGFGLAFARIGAAL--GMKLVLAD--VQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEA 72 (287)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHC--CCEEEEEe--CChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHH
Confidence 478999999999999999988876 46676553 4555555554443 3344333 34344444444
No 117
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=92.75 E-value=1.4 Score=41.27 Aligned_cols=50 Identities=16% Similarity=0.122 Sum_probs=37.3
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEE
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVV 129 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v 129 (435)
.|++.|.|+||.||......+.++ .++|+.+ .+|.+.+.+...+...+..
T Consensus 6 ~~~vlItGas~~iG~~ia~~l~~~--G~~v~~~--~r~~~~~~~~~~~~~~~~~ 55 (257)
T PRK07067 6 GKVALLTGAASGIGEAVAERYLAE--GARVVIA--DIKPARARLAALEIGPAAI 55 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHc--CCEEEEE--cCCHHHHHHHHHHhCCceE
Confidence 368999999999999999999886 5677765 3566777666666554433
No 118
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=92.75 E-value=0.18 Score=51.90 Aligned_cols=40 Identities=18% Similarity=0.357 Sum_probs=33.9
Q ss_pred CeeEEEEecCChHhHHHHHHHHh--CCCceEEEEEeccCCHHH
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAE--HEDKFRVVALAAGSNITL 116 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~--~pd~f~VvaLaa~~N~~~ 116 (435)
..||+|+|+||.+|...++++.+ ||. ++++.++..++..+
T Consensus 7 ~~kVaVvGAtG~vG~eLlrlL~~~~hP~-~~l~~las~rsaGk 48 (344)
T PLN02383 7 GPSVAIVGVTGAVGQEFLSVLTDRDFPY-SSLKMLASARSAGK 48 (344)
T ss_pred CCeEEEEcCCChHHHHHHHHHHhCCCCc-ceEEEEEccCCCCC
Confidence 45799999999999999999998 776 78988887766543
No 119
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=92.75 E-value=1.1 Score=42.09 Aligned_cols=47 Identities=21% Similarity=0.246 Sum_probs=35.4
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCC
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKP 126 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P 126 (435)
.|++.|.|+||.||..+..-+.+. .++|+.+ .+|-+.+.+...+...
T Consensus 6 ~k~vlVtGas~gIG~~ia~~l~~~--G~~V~~~--~r~~~~~~~~~~~~~~ 52 (263)
T PRK06200 6 GQVALITGGGSGIGRALVERFLAE--GARVAVL--ERSAEKLASLRQRFGD 52 (263)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCEEEEE--eCCHHHHHHHHHHhCC
Confidence 368999999999999999999876 5677665 3566666666555543
No 120
>PRK08278 short chain dehydrogenase; Provisional
Probab=92.74 E-value=1.3 Score=42.39 Aligned_cols=32 Identities=22% Similarity=0.211 Sum_probs=26.9
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLa 109 (435)
.|++.|.|+||.||.+..+-+.++ .++|+.+.
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~--G~~V~~~~ 37 (273)
T PRK08278 6 GKTLFITGASRGIGLAIALRAARD--GANIVIAA 37 (273)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC--CCEEEEEe
Confidence 368999999999999999998876 46777664
No 121
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=92.68 E-value=1.2 Score=41.90 Aligned_cols=83 Identities=17% Similarity=0.143 Sum_probs=51.1
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEE-cCcchHHHHHHHHhcCCCCceEE
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAV-RNESLLDEIKEALANVEEKPEIL 154 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v-~~e~~~~~l~~~l~~~~~~~~v~ 154 (435)
.|.+.|.|+||.||.++.+-+.+. .++|+++. .+..+.+.+++++...+...+ .|-...+.++..+.
T Consensus 10 ~k~~lItG~~~gIG~a~a~~l~~~--G~~vv~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--------- 77 (253)
T PRK08993 10 GKVAVVTGCDTGLGQGMALGLAEA--GCDIVGIN-IVEPTETIEQVTALGRRFLSLTADLRKIDGIPALLE--------- 77 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC--CCEEEEec-CcchHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH---------
Confidence 378999999999999999988876 67788763 333455555665554444333 34333444444321
Q ss_pred echhHHHHHhcCCCCCEEEEec
Q 013846 155 AGEQGVIEAARHPDAVTVVTGI 176 (435)
Q Consensus 155 ~G~egl~~l~~~~~~D~Vv~AI 176 (435)
.+.+ ....+|++|+..
T Consensus 78 ----~~~~--~~~~~D~li~~A 93 (253)
T PRK08993 78 ----RAVA--EFGHIDILVNNA 93 (253)
T ss_pred ----HHHH--HhCCCCEEEECC
Confidence 1111 124689998874
No 122
>PRK06138 short chain dehydrogenase; Provisional
Probab=92.67 E-value=1.4 Score=40.70 Aligned_cols=45 Identities=20% Similarity=0.209 Sum_probs=33.0
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f 124 (435)
.|++.|.|+||.||.+..+-+.+. ..+|+++. +|.+.+.+...+.
T Consensus 5 ~k~~lItG~sg~iG~~la~~l~~~--G~~v~~~~--r~~~~~~~~~~~~ 49 (252)
T PRK06138 5 GRVAIVTGAGSGIGRATAKLFARE--GARVVVAD--RDAEAAERVAAAI 49 (252)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHC--CCeEEEec--CCHHHHHHHHHHH
Confidence 468999999999999999988875 56776654 4555555444443
No 123
>PRK08589 short chain dehydrogenase; Validated
Probab=92.66 E-value=1 Score=42.97 Aligned_cols=43 Identities=19% Similarity=0.266 Sum_probs=31.7
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHh
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR 123 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~ 123 (435)
.|++.|.|+||.||..+..-+.+. .++|+.+. +| +.+.+.+.+
T Consensus 6 ~k~vlItGas~gIG~aia~~l~~~--G~~vi~~~--r~-~~~~~~~~~ 48 (272)
T PRK08589 6 NKVAVITGASTGIGQASAIALAQE--GAYVLAVD--IA-EAVSETVDK 48 (272)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC--CCEEEEEe--Cc-HHHHHHHHH
Confidence 478999999999999999988876 56777764 34 444444333
No 124
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=92.65 E-value=0.59 Score=46.93 Aligned_cols=51 Identities=16% Similarity=0.250 Sum_probs=41.5
Q ss_pred CCCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCE
Q 013846 74 DGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQV 128 (435)
Q Consensus 74 ~~~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~ 128 (435)
..+++++|.|||+=||...-+.+.++ .|.|+-++ ++.++|.+++++..=++
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~--g~~liLva--R~~~kL~~la~~l~~~~ 54 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARR--GYNLILVA--RREDKLEALAKELEDKT 54 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHC--CCEEEEEe--CcHHHHHHHHHHHHHhh
Confidence 34679999999999999999999987 56666544 78899999888887555
No 125
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=92.64 E-value=0.16 Score=50.34 Aligned_cols=33 Identities=24% Similarity=0.398 Sum_probs=28.1
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLa 109 (435)
|++|.|+|+||+||.....-+.+.. .++|+++.
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~-~~~V~~~~ 33 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETT-DWEVYGMD 33 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCC-CCeEEEEe
Confidence 4679999999999999999887642 48999986
No 126
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=92.61 E-value=1.2 Score=40.92 Aligned_cols=44 Identities=16% Similarity=0.055 Sum_probs=32.1
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHh
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR 123 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~ 123 (435)
.|+|.|+|+||.||.....-+.++ .++|++++ +|.+.+.+...+
T Consensus 6 ~~~ilItGasg~iG~~l~~~l~~~--g~~V~~~~--r~~~~~~~~~~~ 49 (251)
T PRK12826 6 GRVALVTGAARGIGRAIAVRLAAD--GAEVIVVD--ICGDDAAATAEL 49 (251)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHHH
Confidence 468999999999999998887765 57887764 454444444443
No 127
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=92.60 E-value=0.19 Score=51.64 Aligned_cols=38 Identities=26% Similarity=0.445 Sum_probs=31.6
Q ss_pred CeeEEEEecCChHhHHHHHHHH--hCCCceEEEEEeccCCH
Q 013846 76 PKPISVLGSTGSIGTQTLDIVA--EHEDKFRVVALAAGSNI 114 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~--~~pd~f~VvaLaa~~N~ 114 (435)
|.+|+|+||||.+|...++++. .||. ++++.++..+..
T Consensus 4 ~~~IaIvGATG~vG~eLlrlL~~~~hP~-~~l~~v~s~~~a 43 (336)
T PRK05671 4 PLDIAVVGATGTVGEALVQILEERDFPV-GTLHLLASSESA 43 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhhCCCCc-eEEEEEECcccC
Confidence 4689999999999999999999 5776 788888765443
No 128
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=92.56 E-value=1.1 Score=44.45 Aligned_cols=95 Identities=12% Similarity=0.034 Sum_probs=61.5
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCce-EEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEE
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKF-RVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f-~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~ 154 (435)
.++|.|.|+ |+||..++.+.+.. .. +|++... +-+++ +.++++..+.+.-.++... .+.
T Consensus 170 g~~VlV~G~-G~vG~~aiqlak~~--G~~~Vi~~~~--~~~~~-~~a~~lGa~~vi~~~~~~~---~~~----------- 229 (343)
T PRK09880 170 GKRVFVSGV-GPIGCLIVAAVKTL--GAAEIVCADV--SPRSL-SLAREMGADKLVNPQNDDL---DHY----------- 229 (343)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHc--CCcEEEEEeC--CHHHH-HHHHHcCCcEEecCCcccH---HHH-----------
Confidence 368999996 99999999999876 44 4555443 33444 5778888777653322211 111
Q ss_pred echhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCceeec
Q 013846 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALA 198 (435)
Q Consensus 155 ~G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLA 198 (435)
.+ ....+|+|++++.+-..+...+.+++.|-++.+.
T Consensus 230 ------~~--~~g~~D~vid~~G~~~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 230 ------KA--EKGYFDVSFEVSGHPSSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred ------hc--cCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 00 1124899999965556788888888887766544
No 129
>PLN02240 UDP-glucose 4-epimerase
Probab=92.54 E-value=0.55 Score=46.08 Aligned_cols=32 Identities=28% Similarity=0.442 Sum_probs=27.9
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLa 109 (435)
.|+|.|.|+||+||....+-+.+. .++|+++.
T Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~--g~~V~~~~ 36 (352)
T PLN02240 5 GRTILVTGGAGYIGSHTVLQLLLA--GYKVVVID 36 (352)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC--CCEEEEEe
Confidence 378999999999999999998875 47898885
No 130
>PRK12827 short chain dehydrogenase; Provisional
Probab=92.47 E-value=1.2 Score=40.84 Aligned_cols=47 Identities=13% Similarity=0.161 Sum_probs=33.6
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEe--ccCCHHHHHHHHHhh
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA--AGSNITLLADQVKRF 124 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLa--a~~N~~~L~~q~~~f 124 (435)
.|+|.|.|+||.||.....-+.++ .++|+.+. ..++.+.+.+...++
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~--g~~v~~~~~~~~~~~~~~~~~~~~~ 54 (249)
T PRK12827 6 SRRVLITGGSGGLGRAIAVRLAAD--GADVIVLDIHPMRGRAEADAVAAGI 54 (249)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC--CCeEEEEcCcccccHHHHHHHHHHH
Confidence 468999999999999999888876 56777754 234555555444443
No 131
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=92.47 E-value=0.38 Score=42.04 Aligned_cols=35 Identities=17% Similarity=0.434 Sum_probs=31.8
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCC
Q 013846 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSN 113 (435)
Q Consensus 78 ~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N 113 (435)
||+|.|+||=.|+...+.+.++| .|++++....++
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~-~~~lv~~v~~~~ 36 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESP-GFELVGAVDRKP 36 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHST-TEEEEEEEETTT
T ss_pred EEEEECCCCHHHHHHHHHHHhcC-CcEEEEEEecCC
Confidence 79999999999999999999975 599999988776
No 132
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=92.46 E-value=1.2 Score=41.98 Aligned_cols=45 Identities=18% Similarity=0.222 Sum_probs=33.2
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f 124 (435)
.|++.|.|+||.||.+..+-+.+. .++|+.+ .+|.+.+.+....+
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~~--G~~V~~~--~r~~~~~~~l~~~~ 49 (262)
T TIGR03325 5 GEVVLVTGGASGLGRAIVDRFVAE--GARVAVL--DKSAAGLQELEAAH 49 (262)
T ss_pred CcEEEEECCCChHHHHHHHHHHHC--CCEEEEE--eCCHHHHHHHHhhc
Confidence 478999999999999999988876 5777765 35556655544333
No 133
>PRK07102 short chain dehydrogenase; Provisional
Probab=92.46 E-value=0.82 Score=42.44 Aligned_cols=43 Identities=21% Similarity=0.210 Sum_probs=32.2
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHH
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVK 122 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~ 122 (435)
||+|.|.|+||.||..+..-+.+. .++|+++. ++.+.+.+.+.
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~--G~~Vi~~~--r~~~~~~~~~~ 43 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAA--GARLYLAA--RDVERLERLAD 43 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhc--CCEEEEEe--CCHHHHHHHHH
Confidence 578999999999999999998875 56777764 44555544333
No 134
>PRK07814 short chain dehydrogenase; Provisional
Probab=92.44 E-value=1.4 Score=41.76 Aligned_cols=32 Identities=22% Similarity=0.166 Sum_probs=27.5
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLa 109 (435)
.|++.|.|+||.||.++.+.+.+. .++|+.+.
T Consensus 10 ~~~vlItGasggIG~~~a~~l~~~--G~~Vi~~~ 41 (263)
T PRK07814 10 DQVAVVTGAGRGLGAAIALAFAEA--GADVLIAA 41 (263)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC--CCEEEEEe
Confidence 468999999999999999998875 57887764
No 135
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.40 E-value=1.3 Score=40.62 Aligned_cols=45 Identities=22% Similarity=0.257 Sum_probs=32.1
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHH
Q 013846 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVK 122 (435)
Q Consensus 75 ~~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~ 122 (435)
++|+|.|.|+||.||.....-+.+. .++|+.+. .++-+.+.+...
T Consensus 4 ~~~~ilI~Gasg~iG~~la~~l~~~--g~~v~~~~-~r~~~~~~~~~~ 48 (247)
T PRK05565 4 MGKVAIVTGASGGIGRAIAELLAKE--GAKVVIAY-DINEEAAQELLE 48 (247)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEc-CCCHHHHHHHHH
Confidence 4578999999999999999888765 57777662 234444444433
No 136
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=92.40 E-value=1 Score=43.90 Aligned_cols=96 Identities=20% Similarity=0.321 Sum_probs=59.4
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEEec
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~~G 156 (435)
+||+|+|+||-+|+-.++=..+. .-+|+|++ +|-.++.+. +-+++-..+ | +-
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~R--GHeVTAiv--Rn~~K~~~~------~~~~i~q~D-----------------i-fd 52 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKR--GHEVTAIV--RNASKLAAR------QGVTILQKD-----------------I-FD 52 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhC--CCeeEEEE--eChHhcccc------ccceeeccc-----------------c-cC
Confidence 36999999999999999877654 67899988 677776441 223321111 1 12
Q ss_pred hhHHHHHhcCCCCCEEEEecccc-cCcHH--------HHHHHHc-CCceeecccceeeeccc
Q 013846 157 EQGVIEAARHPDAVTVVTGIVGC-AGLKP--------TVAAIEA-GKDIALANKETLIAGGP 208 (435)
Q Consensus 157 ~egl~~l~~~~~~D~Vv~AIvG~-aGL~p--------t~~Ai~~-gK~iaLANKESLV~aG~ 208 (435)
.+++.+.. ...|.||+|.-+. ++=.. .+.+++. |.. --||+||-
T Consensus 53 ~~~~a~~l--~g~DaVIsA~~~~~~~~~~~~~k~~~~li~~l~~agv~------RllVVGGA 106 (211)
T COG2910 53 LTSLASDL--AGHDAVISAFGAGASDNDELHSKSIEALIEALKGAGVP------RLLVVGGA 106 (211)
T ss_pred hhhhHhhh--cCCceEEEeccCCCCChhHHHHHHHHHHHHHHhhcCCe------eEEEEcCc
Confidence 22222222 3588999998776 34444 5666666 432 45788763
No 137
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=92.36 E-value=1.7 Score=39.91 Aligned_cols=47 Identities=17% Similarity=0.251 Sum_probs=34.3
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCC
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKP 126 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P 126 (435)
.|++.|.|+||.||.+..+-+.++ .+.|+. . .++.+.+.++..+...
T Consensus 6 ~~~vlItGa~g~iG~~la~~l~~~--g~~v~~-~-~~~~~~~~~~~~~~~~ 52 (245)
T PRK12936 6 GRKALVTGASGGIGEEIARLLHAQ--GAIVGL-H-GTRVEKLEALAAELGE 52 (245)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC--CCEEEE-E-cCCHHHHHHHHHHhCC
Confidence 468999999999999999888775 345543 3 3567777776665543
No 138
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=92.35 E-value=1.1 Score=41.27 Aligned_cols=64 Identities=20% Similarity=0.112 Sum_probs=39.4
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHH---hhCCCEEEE-cCcchHHHHHHH
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVK---RFKPQVVAV-RNESLLDEIKEA 143 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~---~f~P~~v~v-~~e~~~~~l~~~ 143 (435)
+|+|.|.|+||+||....+-+.+. .++|++++ ++.+.+.+... ....+...+ .|-...+.++..
T Consensus 1 ~~~vlItGa~g~lG~~l~~~l~~~--g~~v~~~~--r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 68 (255)
T TIGR01963 1 GKTALVTGAASGIGLAIALALAAA--GANVVVND--LGEAGAEAAAKVATDAGGSVIYLVADVTKEDEIADM 68 (255)
T ss_pred CCEEEEcCCcchHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHH
Confidence 368999999999999999998875 56777764 34444443333 333333322 344444444443
No 139
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=92.32 E-value=1.1 Score=41.17 Aligned_cols=45 Identities=20% Similarity=0.199 Sum_probs=32.6
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHh
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR 123 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~ 123 (435)
||.+.|.|+||.||.+..+.+.+. .++|+.+. .+|.+.+.+...+
T Consensus 1 ~~~~lItGa~g~iG~~l~~~l~~~--g~~v~~~~-~~~~~~~~~~~~~ 45 (247)
T PRK09730 1 MAIALVTGGSRGIGRATALLLAQE--GYTVAVNY-QQNLHAAQEVVNL 45 (247)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCEEEEEe-CCChHHHHHHHHH
Confidence 578999999999999999998875 57776543 3455555444433
No 140
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=92.30 E-value=0.37 Score=52.58 Aligned_cols=52 Identities=17% Similarity=0.190 Sum_probs=40.5
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEE-EEEeccCCHHHHHHHHHhhCCCEEE
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRV-VALAAGSNITLLADQVKRFKPQVVA 130 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~V-vaLaa~~N~~~L~~q~~~f~P~~v~ 130 (435)
+||.|.|+||+||+...+.+.+. .++| ++..--.+.+.+.+.+.+++|++|.
T Consensus 381 mkiLVtGa~G~iG~~l~~~L~~~--g~~v~~~~~~l~d~~~v~~~i~~~~pd~Vi 433 (668)
T PLN02260 381 LKFLIYGRTGWIGGLLGKLCEKQ--GIAYEYGKGRLEDRSSLLADIRNVKPTHVF 433 (668)
T ss_pred ceEEEECCCchHHHHHHHHHHhC--CCeEEeeccccccHHHHHHHHHhhCCCEEE
Confidence 47999999999999999988765 4666 3332235677777888889999987
No 141
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=92.29 E-value=0.39 Score=47.41 Aligned_cols=33 Identities=18% Similarity=0.325 Sum_probs=26.3
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEec
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa 110 (435)
||+|.|.|+||+||....+-+.+. .++++.+..
T Consensus 1 ~~~vlVtGatGfIG~~l~~~L~~~--g~~~v~~~~ 33 (355)
T PRK10217 1 MRKILITGGAGFIGSALVRYIINE--TSDAVVVVD 33 (355)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHHc--CCCEEEEEe
Confidence 578999999999999999998875 355555443
No 142
>PLN02572 UDP-sulfoquinovose synthase
Probab=92.28 E-value=0.6 Score=48.98 Aligned_cols=33 Identities=21% Similarity=0.312 Sum_probs=27.8
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 013846 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (435)
Q Consensus 75 ~~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLa 109 (435)
.+|+|.|.|+||+||....+-+.+. .++|+++.
T Consensus 46 ~~k~VLVTGatGfIGs~Lv~~L~~~--G~~V~~~d 78 (442)
T PLN02572 46 KKKKVMVIGGDGYCGWATALHLSKR--GYEVAIVD 78 (442)
T ss_pred cCCEEEEECCCcHHHHHHHHHHHHC--CCeEEEEe
Confidence 3467999999999999999988875 57888863
No 143
>PRK09135 pteridine reductase; Provisional
Probab=92.28 E-value=1.4 Score=40.42 Aligned_cols=41 Identities=15% Similarity=0.127 Sum_probs=31.3
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHH
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQ 120 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q 120 (435)
++|.|.|+||+||.+..+-+.++ .++|+++. +++.+.+.+.
T Consensus 7 ~~vlItGa~g~iG~~l~~~l~~~--g~~v~~~~-r~~~~~~~~~ 47 (249)
T PRK09135 7 KVALITGGARRIGAAIARTLHAA--GYRVAIHY-HRSAAEADAL 47 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHC--CCEEEEEc-CCCHHHHHHH
Confidence 68999999999999999998876 67888775 4344444333
No 144
>PRK09072 short chain dehydrogenase; Provisional
Probab=92.22 E-value=1.9 Score=40.65 Aligned_cols=44 Identities=23% Similarity=0.347 Sum_probs=32.8
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHh
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR 123 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~ 123 (435)
.++|.|.|+||.||.....-+.+. .++|++++ +|.+.+.+...+
T Consensus 5 ~~~vlItG~s~~iG~~ia~~l~~~--G~~V~~~~--r~~~~~~~~~~~ 48 (263)
T PRK09072 5 DKRVLLTGASGGIGQALAEALAAA--GARLLLVG--RNAEKLEALAAR 48 (263)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC--CCEEEEEE--CCHHHHHHHHHH
Confidence 367999999999999999988875 57887765 455555444333
No 145
>PRK06949 short chain dehydrogenase; Provisional
Probab=92.22 E-value=2.1 Score=39.84 Aligned_cols=43 Identities=19% Similarity=0.267 Sum_probs=32.2
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHH
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVK 122 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~ 122 (435)
.|+|.|.|+||.||.+..+-+.+. .++|+++. +|.+.+.+...
T Consensus 9 ~k~ilItGasg~IG~~~a~~l~~~--G~~Vi~~~--r~~~~~~~~~~ 51 (258)
T PRK06949 9 GKVALVTGASSGLGARFAQVLAQA--GAKVVLAS--RRVERLKELRA 51 (258)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHH
Confidence 479999999999999999999875 56777664 34555544333
No 146
>PRK09134 short chain dehydrogenase; Provisional
Probab=92.21 E-value=1.2 Score=41.94 Aligned_cols=83 Identities=19% Similarity=0.194 Sum_probs=49.0
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHH---HHHHHHhhCCCEEE-EcCcchHHHHHHHHhcCCCCc
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITL---LADQVKRFKPQVVA-VRNESLLDEIKEALANVEEKP 151 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~---L~~q~~~f~P~~v~-v~~e~~~~~l~~~l~~~~~~~ 151 (435)
.|++.|.|+||.||....+.+.++ .++|+.+.. ++-+. +.+++++-..+... ..|-...+.+.+.+.
T Consensus 9 ~k~vlItGas~giG~~la~~l~~~--g~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------ 79 (258)
T PRK09134 9 PRAALVTGAARRIGRAIALDLAAH--GFDVAVHYN-RSRDEAEALAAEIRALGRRAVALQADLADEAEVRALVA------ 79 (258)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeC-CCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHH------
Confidence 468999999999999999999876 467776543 34333 33344332333322 245444444554331
Q ss_pred eEEechhHHHHHhcCCCCCEEEEec
Q 013846 152 EILAGEQGVIEAARHPDAVTVVTGI 176 (435)
Q Consensus 152 ~v~~G~egl~~l~~~~~~D~Vv~AI 176 (435)
.+.+ ....+|+||+..
T Consensus 80 -------~~~~--~~~~iD~vi~~a 95 (258)
T PRK09134 80 -------RASA--ALGPITLLVNNA 95 (258)
T ss_pred -------HHHH--HcCCCCEEEECC
Confidence 1111 124689999875
No 147
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=92.19 E-value=1.3 Score=44.33 Aligned_cols=62 Identities=16% Similarity=0.155 Sum_probs=45.9
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCC--CEEEEcCcchHHHHHH
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKP--QVVAVRNESLLDEIKE 142 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P--~~v~v~~e~~~~~l~~ 142 (435)
|-+.|-|+|..||..|-+.+.+. .++|+.. +++.+.|.+.+.++.. -.+...|=.+.+.++.
T Consensus 7 kv~lITGASSGiG~A~A~~l~~~--G~~vvl~--aRR~drL~~la~~~~~~~~~~~~~DVtD~~~~~~ 70 (246)
T COG4221 7 KVALITGASSGIGEATARALAEA--GAKVVLA--ARREERLEALADEIGAGAALALALDVTDRAAVEA 70 (246)
T ss_pred cEEEEecCcchHHHHHHHHHHHC--CCeEEEE--eccHHHHHHHHHhhccCceEEEeeccCCHHHHHH
Confidence 67899999999999999999886 6777764 4778999999999984 2333344444444443
No 148
>PLN02427 UDP-apiose/xylose synthase
Probab=92.14 E-value=0.23 Score=50.10 Aligned_cols=37 Identities=24% Similarity=0.365 Sum_probs=30.0
Q ss_pred CCCCCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 013846 72 TWDGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (435)
Q Consensus 72 ~~~~~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLa 109 (435)
....++||.|.|+||+||.+.++-+.+.. .++|+++.
T Consensus 10 ~~~~~~~VlVTGgtGfIGs~lv~~L~~~~-g~~V~~l~ 46 (386)
T PLN02427 10 KPIKPLTICMIGAGGFIGSHLCEKLMTET-PHKVLALD 46 (386)
T ss_pred CcccCcEEEEECCcchHHHHHHHHHHhcC-CCEEEEEe
Confidence 34556789999999999999999887752 47899886
No 149
>PRK12744 short chain dehydrogenase; Provisional
Probab=92.12 E-value=1.8 Score=40.70 Aligned_cols=83 Identities=13% Similarity=0.132 Sum_probs=48.5
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEecc--CCHHH---HHHHHHhhCCCEEEE-cCcchHHHHHHHHhcCCCC
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG--SNITL---LADQVKRFKPQVVAV-RNESLLDEIKEALANVEEK 150 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~--~N~~~---L~~q~~~f~P~~v~v-~~e~~~~~l~~~l~~~~~~ 150 (435)
|++.|.|+||.||..+.+.+.+. .++|+.+... ++.+. +.++.+.+..+...+ .|-...+.+++.+.
T Consensus 9 k~vlItGa~~gIG~~~a~~l~~~--G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~----- 81 (257)
T PRK12744 9 KVVLIAGGAKNLGGLIARDLAAQ--GAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFD----- 81 (257)
T ss_pred cEEEEECCCchHHHHHHHHHHHC--CCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHH-----
Confidence 68999999999999999999876 5666666532 23333 333344444443332 34333444444321
Q ss_pred ceEEechhHHHHHhcCCCCCEEEEec
Q 013846 151 PEILAGEQGVIEAARHPDAVTVVTGI 176 (435)
Q Consensus 151 ~~v~~G~egl~~l~~~~~~D~Vv~AI 176 (435)
.+. .....+|++|+..
T Consensus 82 --------~~~--~~~~~id~li~~a 97 (257)
T PRK12744 82 --------DAK--AAFGRPDIAINTV 97 (257)
T ss_pred --------HHH--HhhCCCCEEEECC
Confidence 111 1224689998875
No 150
>PRK07890 short chain dehydrogenase; Provisional
Probab=92.00 E-value=1.3 Score=41.25 Aligned_cols=43 Identities=21% Similarity=0.118 Sum_probs=31.3
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHH
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVK 122 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~ 122 (435)
.|+|.|.|+||.||.++..-+.+. .++|+.+. +|.+.+.+...
T Consensus 5 ~k~vlItGa~~~IG~~la~~l~~~--G~~V~~~~--r~~~~~~~~~~ 47 (258)
T PRK07890 5 GKVVVVSGVGPGLGRTLAVRAARA--GADVVLAA--RTAERLDEVAA 47 (258)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHc--CCEEEEEe--CCHHHHHHHHH
Confidence 478999999999999999988876 46776654 34444444333
No 151
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=91.93 E-value=0.51 Score=46.63 Aligned_cols=32 Identities=25% Similarity=0.325 Sum_probs=27.6
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEec
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa 110 (435)
|+|.|.|+||+||....+-+.+. .++|+++.-
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~--G~~V~~~~r 32 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEK--GYEVHGLIR 32 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHC--CCEEEEEec
Confidence 58999999999999999988875 678988753
No 152
>PRK06172 short chain dehydrogenase; Provisional
Probab=91.91 E-value=1.7 Score=40.46 Aligned_cols=49 Identities=18% Similarity=0.135 Sum_probs=34.0
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHH---HHHHHHhhCCCE
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITL---LADQVKRFKPQV 128 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~---L~~q~~~f~P~~ 128 (435)
.|+|.|.|+||.||..+..-+.+. .++|+.+. +|-+. +.++.++...+.
T Consensus 7 ~k~ilItGas~~iG~~ia~~l~~~--G~~v~~~~--r~~~~~~~~~~~~~~~~~~~ 58 (253)
T PRK06172 7 GKVALVTGGAAGIGRATALAFARE--GAKVVVAD--RDAAGGEETVALIREAGGEA 58 (253)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHc--CCEEEEEe--CCHHHHHHHHHHHHhcCCce
Confidence 478999999999999999988875 46776653 33333 444445544443
No 153
>PRK06500 short chain dehydrogenase; Provisional
Probab=91.87 E-value=1.2 Score=41.12 Aligned_cols=49 Identities=20% Similarity=0.204 Sum_probs=36.8
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCE
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQV 128 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~ 128 (435)
.|+|.|.|+||.||....+-+.+. .++|+.+ .+|.+.+.+..+++..+.
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~--g~~v~~~--~r~~~~~~~~~~~~~~~~ 54 (249)
T PRK06500 6 GKTALITGGTSGIGLETARQFLAE--GARVAIT--GRDPASLEAARAELGESA 54 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCEEEEe--cCCHHHHHHHHHHhCCce
Confidence 368999999999999999998876 4667655 456677776666665443
No 154
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=91.85 E-value=1.7 Score=40.24 Aligned_cols=85 Identities=19% Similarity=0.182 Sum_probs=49.9
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHH---hhCCCEEEE-cCcchHHHHHHHHhcCCCCc
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVK---RFKPQVVAV-RNESLLDEIKEALANVEEKP 151 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~---~f~P~~v~v-~~e~~~~~l~~~l~~~~~~~ 151 (435)
.|++.|.|+||.||....+-+.++ .++|+.+ ..++-+.+.+... +..++...+ .|-...+.+.+.+.
T Consensus 6 ~~~~lItG~s~~iG~~la~~l~~~--g~~v~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~------ 76 (247)
T PRK12935 6 GKVAIVTGGAKGIGKAITVALAQE--GAKVVIN-YNSSKEAAENLVNELGKEGHDVYAVQADVSKVEDANRLVE------ 76 (247)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHc--CCEEEEE-cCCcHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH------
Confidence 478999999999999999988876 5667654 3444444444333 333344333 34333444444331
Q ss_pred eEEechhHHHHHhcCCCCCEEEEecccc
Q 013846 152 EILAGEQGVIEAARHPDAVTVVTGIVGC 179 (435)
Q Consensus 152 ~v~~G~egl~~l~~~~~~D~Vv~AIvG~ 179 (435)
.+.+ ....+|.|++. +|.
T Consensus 77 -------~~~~--~~~~id~vi~~-ag~ 94 (247)
T PRK12935 77 -------EAVN--HFGKVDILVNN-AGI 94 (247)
T ss_pred -------HHHH--HcCCCCEEEEC-CCC
Confidence 1111 12468999887 444
No 155
>PRK06924 short chain dehydrogenase; Provisional
Probab=91.70 E-value=0.88 Score=42.25 Aligned_cols=50 Identities=10% Similarity=0.278 Sum_probs=34.9
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCE
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQV 128 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~ 128 (435)
||+|.|.|+||.||.+..+-+.++ .++|+.++ ++..+.+.+...+...+.
T Consensus 1 ~k~vlItGasggiG~~ia~~l~~~--g~~V~~~~-r~~~~~~~~~~~~~~~~~ 50 (251)
T PRK06924 1 MRYVIITGTSQGLGEAIANQLLEK--GTHVISIS-RTENKELTKLAEQYNSNL 50 (251)
T ss_pred CcEEEEecCCchHHHHHHHHHHhc--CCEEEEEe-CCchHHHHHHHhccCCce
Confidence 578999999999999999988775 56787764 333344554444444443
No 156
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.65 E-value=1.1 Score=41.57 Aligned_cols=42 Identities=19% Similarity=0.124 Sum_probs=30.9
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHH
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQ 120 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q 120 (435)
+|.|.|.|+||.||.+..+-+.+. .++|+.+. +++-+.+.+.
T Consensus 2 ~k~vlItG~sg~iG~~la~~L~~~--g~~vi~~~-r~~~~~~~~~ 43 (256)
T PRK12745 2 RPVALVTGGRRGIGLGIARALAAA--GFDLAIND-RPDDEELAAT 43 (256)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHC--CCEEEEEe-cCchhHHHHH
Confidence 478999999999999999999876 56787765 3333443333
No 157
>PRK05867 short chain dehydrogenase; Provisional
Probab=91.63 E-value=1.5 Score=41.15 Aligned_cols=44 Identities=16% Similarity=0.194 Sum_probs=32.8
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f 124 (435)
|++.|.|+||.||.++..-+.+. .++|+.+ ++|.+.+.+...+.
T Consensus 10 k~vlVtGas~gIG~~ia~~l~~~--G~~V~~~--~r~~~~~~~~~~~l 53 (253)
T PRK05867 10 KRALITGASTGIGKRVALAYVEA--GAQVAIA--ARHLDALEKLADEI 53 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHC--CCEEEEE--cCCHHHHHHHHHHH
Confidence 68999999999999999999886 5677664 34555555544443
No 158
>PRK06701 short chain dehydrogenase; Provisional
Probab=91.60 E-value=2.6 Score=41.12 Aligned_cols=64 Identities=13% Similarity=0.098 Sum_probs=38.8
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCC--HHHHHHHHHhhCCCEEEE-cCcchHHHHHH
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSN--ITLLADQVKRFKPQVVAV-RNESLLDEIKE 142 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N--~~~L~~q~~~f~P~~v~v-~~e~~~~~l~~ 142 (435)
|+|.|.|+||.||..+..-+.++ .++|+.+....+ .+.+.+.++....+...+ .|-...+.+.+
T Consensus 47 k~iLItGasggIG~~la~~l~~~--G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 113 (290)
T PRK06701 47 KVALITGGDSGIGRAVAVLFAKE--GADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKD 113 (290)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHH
Confidence 68999999999999999988876 567765544322 334444444333333332 34333344443
No 159
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=91.58 E-value=1.6 Score=41.24 Aligned_cols=46 Identities=17% Similarity=0.211 Sum_probs=34.3
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f 124 (435)
.|++.|.|+||.||..+.+-+.+. .++|+. .+.+|.+.+.+.+++.
T Consensus 8 ~k~vlItGas~gIG~~ia~~l~~~--G~~v~~-~~~~~~~~~~~~~~~~ 53 (260)
T PRK08416 8 GKTLVISGGTRGIGKAIVYEFAQS--GVNIAF-TYNSNVEEANKIAEDL 53 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCEEEE-EcCCCHHHHHHHHHHH
Confidence 478999999999999999988875 566654 4556777666555443
No 160
>PRK06128 oxidoreductase; Provisional
Probab=91.56 E-value=1.8 Score=42.12 Aligned_cols=64 Identities=11% Similarity=0.041 Sum_probs=40.2
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCC---HHHHHHHHHhhCCCEEEE-cCcchHHHHHH
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSN---ITLLADQVKRFKPQVVAV-RNESLLDEIKE 142 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N---~~~L~~q~~~f~P~~v~v-~~e~~~~~l~~ 142 (435)
|++.|.|+||.||....+-+.+. .++|+...-..+ .+.+.+.++....+...+ .|-...+.+++
T Consensus 56 k~vlITGas~gIG~~~a~~l~~~--G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~ 123 (300)
T PRK06128 56 RKALITGADSGIGRATAIAFARE--GADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQ 123 (300)
T ss_pred CEEEEecCCCcHHHHHHHHHHHc--CCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHH
Confidence 78999999999999999999876 567765432222 344555555555444433 34444444444
No 161
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=91.44 E-value=0.75 Score=42.87 Aligned_cols=40 Identities=25% Similarity=0.225 Sum_probs=33.0
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHH
Q 013846 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQV 121 (435)
Q Consensus 78 ~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~ 121 (435)
+|.|+|+||.||+.+++-+.+. .++|++++ +|-+.+....
T Consensus 2 ~ilV~GatG~~G~~~~~~L~~~--~~~v~~~~--r~~~~~~~~~ 41 (275)
T COG0702 2 KILVTGATGFVGGAVVRELLAR--GHEVRAAV--RNPEAAAALA 41 (275)
T ss_pred eEEEEecccchHHHHHHHHHhC--CCEEEEEE--eCHHHHHhhc
Confidence 6999999999999999999987 77888776 6666665544
No 162
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=91.44 E-value=2 Score=44.07 Aligned_cols=109 Identities=21% Similarity=0.198 Sum_probs=66.9
Q ss_pred eEEEEecCChHhHHHHHHHHhCC--CceEEEEEeccCCHHHHHHHHH------hhCCCEEEEcCcchHHHHHHHHhcCCC
Q 013846 78 PISVLGSTGSIGTQTLDIVAEHE--DKFRVVALAAGSNITLLADQVK------RFKPQVVAVRNESLLDEIKEALANVEE 149 (435)
Q Consensus 78 ~I~IlGSTGSIG~qtLdVi~~~p--d~f~VvaLaa~~N~~~L~~q~~------~f~P~~v~v~~e~~~~~l~~~l~~~~~ 149 (435)
||+|.|. |=||+..++++.+.+ ++|+|+++---...+-++...+ +|+- -|...+.. +.-.+.
T Consensus 1 ~IaInGf-GrIGR~vlr~l~e~~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~-~v~~~~~~--------l~v~g~ 70 (325)
T TIGR01532 1 RVAINGF-GRIGRNVLRALYESGERLGIEVVALNELADQASMAHLLRYDTSHGRFPG-EVKVDGDC--------LHVNGD 70 (325)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCC-cEEEeCCE--------EEECCe
Confidence 6999999 999999999988765 5799999976555555544333 1211 11111110 000011
Q ss_pred CceEEechhHHHHHh-cCCCCCEEEEecccccCcHHHHHHHHcC-Cceee
Q 013846 150 KPEILAGEQGVIEAA-RHPDAVTVVTGIVGCAGLKPTVAAIEAG-KDIAL 197 (435)
Q Consensus 150 ~~~v~~G~egl~~l~-~~~~~D~Vv~AIvG~aGL~pt~~Ai~~g-K~iaL 197 (435)
.++++.- ....++- ...++|+|+.+.-.+.-.+-...++++| |.|-+
T Consensus 71 ~i~v~~~-~~p~~~~w~~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~ 119 (325)
T TIGR01532 71 CIRVLHS-PTPEALPWRALGVDLVLDCTGVYGNREQGERHIRAGAKRVLF 119 (325)
T ss_pred EEEEEEc-CChhhccccccCCCEEEEccchhccHHHHHHHHHcCCeEEEe
Confidence 2334322 2233332 2347999999988888888888999999 44433
No 163
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=91.41 E-value=1.1 Score=46.19 Aligned_cols=39 Identities=13% Similarity=0.304 Sum_probs=32.4
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHH
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITL 116 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~ 116 (435)
+.||+|+|. |.||+..+..+.++|| ++++|+..++..+.
T Consensus 3 kIRVgIVG~-GnIGr~~a~al~~~pd-~ELVgV~dr~~~~~ 41 (324)
T TIGR01921 3 KIRAAIVGY-GNLGRSVEKAIQQQPD-MELVGVFSRRGAET 41 (324)
T ss_pred CcEEEEEee-cHHHHHHHHHHHhCCC-cEEEEEEcCCcHHH
Confidence 358999997 9999999999998876 89999877764343
No 164
>PRK09291 short chain dehydrogenase; Provisional
Probab=91.39 E-value=0.78 Score=42.63 Aligned_cols=50 Identities=20% Similarity=0.191 Sum_probs=34.4
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEecc-CCHHHHHHHHHhhCCC
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG-SNITLLADQVKRFKPQ 127 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~-~N~~~L~~q~~~f~P~ 127 (435)
+|+|.|.|+||.||.....-+.+. .++|++++-. .+.+.+.+.+....++
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~--G~~v~~~~r~~~~~~~~~~~~~~~~~~ 52 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARK--GHNVIAGVQIAPQVTALRAEAARRGLA 52 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCc
Confidence 468999999999999999998875 5778876521 1233444444444444
No 165
>PRK06483 dihydromonapterin reductase; Provisional
Probab=91.39 E-value=2 Score=39.70 Aligned_cols=62 Identities=18% Similarity=0.102 Sum_probs=39.2
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHH
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKE 142 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~ 142 (435)
+|++.|.|+||.||..+..-+.+. .++|+.+. +|-+.+.+..++.+.. +...|-...+.+++
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~~--G~~V~~~~--r~~~~~~~~~~~~~~~-~~~~D~~~~~~~~~ 63 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLAQ--GQPVIVSY--RTHYPAIDGLRQAGAQ-CIQADFSTNAGIMA 63 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHHC--CCeEEEEe--CCchhHHHHHHHcCCE-EEEcCCCCHHHHHH
Confidence 578999999999999999988875 67787754 3334444555544422 22334333344443
No 166
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=91.29 E-value=1.9 Score=39.86 Aligned_cols=40 Identities=28% Similarity=0.260 Sum_probs=30.1
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHH
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLAD 119 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~ 119 (435)
.|++.|.|+||.||..+..-+.+. .++|+.+. +|.+.+.+
T Consensus 3 ~~~ilItGas~~iG~~la~~l~~~--g~~v~~~~--r~~~~~~~ 42 (250)
T TIGR03206 3 DKTAIVTGGGGGIGGATCRRFAEE--GAKVAVFD--LNREAAEK 42 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHC--CCEEEEec--CCHHHHHH
Confidence 478999999999999999988875 56776654 34444443
No 167
>PRK07904 short chain dehydrogenase; Provisional
Probab=91.23 E-value=2.9 Score=39.76 Aligned_cols=35 Identities=31% Similarity=0.415 Sum_probs=27.4
Q ss_pred CCCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 013846 74 DGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (435)
Q Consensus 74 ~~~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLa 109 (435)
...|+|.|.|+||-||....+-+.+.. .++|+.++
T Consensus 6 ~~~~~vlItGas~giG~~la~~l~~~g-g~~V~~~~ 40 (253)
T PRK07904 6 GNPQTILLLGGTSEIGLAICERYLKNA-PARVVLAA 40 (253)
T ss_pred CCCcEEEEEcCCcHHHHHHHHHHHhcC-CCeEEEEe
Confidence 346789999999999999998877642 37777653
No 168
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=91.21 E-value=2.1 Score=39.97 Aligned_cols=44 Identities=20% Similarity=0.182 Sum_probs=31.9
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHH
Q 013846 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVK 122 (435)
Q Consensus 75 ~~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~ 122 (435)
..|+|.|.|+||.||..+.+.+.++ .++|+.+. +|.+.+.+...
T Consensus 10 ~~k~ilItGas~~IG~~la~~l~~~--G~~v~~~~--r~~~~~~~~~~ 53 (256)
T PRK06124 10 AGQVALVTGSARGLGFEIARALAGA--GAHVLVNG--RNAATLEAAVA 53 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHc--CCeEEEEe--CCHHHHHHHHH
Confidence 3578999999999999999988875 57777653 34444444333
No 169
>PRK06914 short chain dehydrogenase; Provisional
Probab=91.20 E-value=2.1 Score=40.68 Aligned_cols=41 Identities=22% Similarity=0.174 Sum_probs=30.6
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHH
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQ 120 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q 120 (435)
.|.+.|.|+||.||.+..+-+.+. .++|++++ ++.+.+.+.
T Consensus 3 ~k~~lItGasg~iG~~la~~l~~~--G~~V~~~~--r~~~~~~~~ 43 (280)
T PRK06914 3 KKIAIVTGASSGFGLLTTLELAKK--GYLVIATM--RNPEKQENL 43 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHhC--CCEEEEEe--CCHHHHHHH
Confidence 367999999999999999988875 67887764 444444333
No 170
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=91.15 E-value=2.5 Score=39.46 Aligned_cols=94 Identities=11% Similarity=0.072 Sum_probs=59.0
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEEe
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~~ 155 (435)
-.+|.|.|++|.+|..++.+.+.. .++|++.+ ++-+.+ +.++++..+.+....+.. +.
T Consensus 137 g~~vlI~g~~g~~g~~~~~~a~~~--g~~v~~~~--~~~~~~-~~~~~~g~~~~~~~~~~~---~~-------------- 194 (320)
T cd05286 137 GDTVLVHAAAGGVGLLLTQWAKAL--GATVIGTV--SSEEKA-ELARAAGADHVINYRDED---FV-------------- 194 (320)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHc--CCEEEEEc--CCHHHH-HHHHHCCCCEEEeCCchh---HH--------------
Confidence 368999999999999999999987 56777765 344443 334667766655332211 11
Q ss_pred chhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCc
Q 013846 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD 194 (435)
Q Consensus 156 G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ 194 (435)
+.+.++.....+|.+++.+.| ..+...+.+++.+-+
T Consensus 195 --~~~~~~~~~~~~d~vl~~~~~-~~~~~~~~~l~~~g~ 230 (320)
T cd05286 195 --ERVREITGGRGVDVVYDGVGK-DTFEGSLDSLRPRGT 230 (320)
T ss_pred --HHHHHHcCCCCeeEEEECCCc-HhHHHHHHhhccCcE
Confidence 112222233458999988766 456666666655443
No 171
>PRK07109 short chain dehydrogenase; Provisional
Probab=91.15 E-value=1.9 Score=43.31 Aligned_cols=63 Identities=17% Similarity=0.256 Sum_probs=40.6
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHH---HHHHhhCCCEEEE-cCcchHHHHHH
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLA---DQVKRFKPQVVAV-RNESLLDEIKE 142 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~---~q~~~f~P~~v~v-~~e~~~~~l~~ 142 (435)
.|+|+|.|+||.||..+.+-+.+. .++|+.++ +|-+.+. +++++...+...+ .|-...+.+++
T Consensus 8 ~k~vlITGas~gIG~~la~~la~~--G~~Vvl~~--R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~ 74 (334)
T PRK07109 8 RQVVVITGASAGVGRATARAFARR--GAKVVLLA--RGEEGLEALAAEIRAAGGEALAVVADVADAEAVQA 74 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEE--CCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHH
Confidence 468999999999999999988875 56777654 4555444 4444444454433 34444444443
No 172
>PRK07063 short chain dehydrogenase; Provisional
Probab=91.09 E-value=1.9 Score=40.39 Aligned_cols=45 Identities=18% Similarity=0.130 Sum_probs=34.0
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f 124 (435)
.|++.|.|+||.||.++.+.+.+. .++|+.+. +|.+.+.+.++++
T Consensus 7 ~k~vlVtGas~gIG~~~a~~l~~~--G~~vv~~~--r~~~~~~~~~~~~ 51 (260)
T PRK07063 7 GKVALVTGAAQGIGAAIARAFARE--GAAVALAD--LDAALAERAAAAI 51 (260)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHHHH
Confidence 468999999999999999999876 56777653 4556665555544
No 173
>PRK07074 short chain dehydrogenase; Provisional
Probab=91.08 E-value=2.6 Score=39.36 Aligned_cols=44 Identities=25% Similarity=0.251 Sum_probs=32.6
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHh
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR 123 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~ 123 (435)
.|++.|.|+||.||..+.+-+.+. .++|+++. +|-+.+.+...+
T Consensus 2 ~k~ilItGat~~iG~~la~~L~~~--g~~v~~~~--r~~~~~~~~~~~ 45 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRFLAA--GDRVLALD--IDAAALAAFADA 45 (257)
T ss_pred CCEEEEECCcchHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHHH
Confidence 368999999999999999988875 56777765 455555444443
No 174
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=91.06 E-value=2.1 Score=37.07 Aligned_cols=86 Identities=14% Similarity=0.137 Sum_probs=50.5
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHH---HhhCCCEEEE-cCcchHHHHHHHHhcCCCCce
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQV---KRFKPQVVAV-RNESLLDEIKEALANVEEKPE 152 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~---~~f~P~~v~v-~~e~~~~~l~~~l~~~~~~~~ 152 (435)
|.+.|.|+||=||.+..+-..+. ....|+.+.-+.+.+.+.+.+ +....+...+ .|-...+.++..+.
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~-g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~------- 72 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARR-GARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIE------- 72 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHT-TTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHH-------
T ss_pred CEEEEECCCCHHHHHHHHHHHhc-CceEEEEeeeccccccccccccccccccccccccccccccccccccccc-------
Confidence 68999999999999999999887 334444444331244444443 4344554444 34344445554431
Q ss_pred EEechhHHHHHhcCCCCCEEEEeccc
Q 013846 153 ILAGEQGVIEAARHPDAVTVVTGIVG 178 (435)
Q Consensus 153 v~~G~egl~~l~~~~~~D~Vv~AIvG 178 (435)
.+. .+....|++++....
T Consensus 73 ------~~~--~~~~~ld~li~~ag~ 90 (167)
T PF00106_consen 73 ------EVI--KRFGPLDILINNAGI 90 (167)
T ss_dssp ------HHH--HHHSSESEEEEECSC
T ss_pred ------ccc--ccccccccccccccc
Confidence 111 133468999987433
No 175
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=91.03 E-value=3.1 Score=38.44 Aligned_cols=64 Identities=17% Similarity=0.130 Sum_probs=40.3
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHH---hhCCCEE-EEcCcchHHHHHHH
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVK---RFKPQVV-AVRNESLLDEIKEA 143 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~---~f~P~~v-~v~~e~~~~~l~~~ 143 (435)
.|+|.|.|+||.||....+-+.+. .++|+.+. +|-+.+.+... ...++.. ...|-...+.+++.
T Consensus 4 ~~~vlItG~sg~iG~~la~~l~~~--g~~v~~~~--r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 71 (258)
T PRK12429 4 GKVALVTGAASGIGLEIALALAKE--GAKVVIAD--LNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAG 71 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC--CCeEEEEe--CCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHH
Confidence 378999999999999999988875 67887763 44454444333 3344432 23444444444443
No 176
>PRK05993 short chain dehydrogenase; Provisional
Probab=91.01 E-value=2.6 Score=40.39 Aligned_cols=41 Identities=20% Similarity=0.266 Sum_probs=31.9
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHH
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQ 120 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q 120 (435)
+|+|.|.|+||.||..+..-+.+. .++|++++ +|.+.+.+.
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~--G~~Vi~~~--r~~~~~~~l 44 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSD--GWRVFATC--RKEEDVAAL 44 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEE--CCHHHHHHH
Confidence 478999999999999999888775 67887754 556666543
No 177
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=90.95 E-value=2.3 Score=41.57 Aligned_cols=95 Identities=15% Similarity=0.186 Sum_probs=60.8
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceE-EEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEE
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFR-VVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~-VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~ 154 (435)
-.+|.|+|+ |.||..++.+.+... .+ |+++. ++-+++ +.++++..+.+.-..+...+.
T Consensus 164 g~~vlV~G~-G~vG~~~~~~ak~~G--~~~vi~~~--~~~~~~-~~~~~~ga~~~i~~~~~~~~~--------------- 222 (339)
T cd08239 164 RDTVLVVGA-GPVGLGALMLARALG--AEDVIGVD--PSPERL-ELAKALGADFVINSGQDDVQE--------------- 222 (339)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcC--CCEEEEEC--CCHHHH-HHHHHhCCCEEEcCCcchHHH---------------
Confidence 468999986 999999999998873 44 77654 344444 456788776654322111212
Q ss_pred echhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCcee
Q 013846 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (435)
Q Consensus 155 ~G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ia 196 (435)
+.++.....+|+|+++..+-..+...+..++.+-++.
T Consensus 223 -----~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v 259 (339)
T cd08239 223 -----IRELTSGAGADVAIECSGNTAARRLALEAVRPWGRLV 259 (339)
T ss_pred -----HHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcCCEEE
Confidence 2222233368999999777666677777787765543
No 178
>CHL00194 ycf39 Ycf39; Provisional
Probab=90.94 E-value=0.3 Score=48.06 Aligned_cols=30 Identities=27% Similarity=0.556 Sum_probs=26.8
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 013846 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (435)
Q Consensus 78 ~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLa 109 (435)
+|.|+|+||+||...++-+.+. .++|++++
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~--g~~V~~l~ 31 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDE--GYQVRCLV 31 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHC--CCeEEEEE
Confidence 6999999999999999988875 58899986
No 179
>PRK08017 oxidoreductase; Provisional
Probab=90.94 E-value=1.3 Score=41.20 Aligned_cols=61 Identities=13% Similarity=0.178 Sum_probs=39.1
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHH
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKE 142 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~ 142 (435)
+|+|.|.|+||.||.+..+.+.+. .++|+++ .+|.+.+.+ +++.+...+ ..|-...+.+++
T Consensus 2 ~k~vlVtGasg~IG~~la~~l~~~--g~~v~~~--~r~~~~~~~-~~~~~~~~~-~~D~~~~~~~~~ 62 (256)
T PRK08017 2 QKSVLITGCSSGIGLEAALELKRR--GYRVLAA--CRKPDDVAR-MNSLGFTGI-LLDLDDPESVER 62 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC--CCEEEEE--eCCHHHhHH-HHhCCCeEE-EeecCCHHHHHH
Confidence 468999999999999999999876 4677665 356666543 333443333 234333444443
No 180
>PRK05872 short chain dehydrogenase; Provisional
Probab=90.93 E-value=2.3 Score=41.43 Aligned_cols=46 Identities=15% Similarity=0.164 Sum_probs=35.9
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhC
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFK 125 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~ 125 (435)
.|++.|.|+||.||..+...+.+. ..+|+.+ ++|.+.+.+..+++.
T Consensus 9 gk~vlItGas~gIG~~ia~~l~~~--G~~V~~~--~r~~~~l~~~~~~l~ 54 (296)
T PRK05872 9 GKVVVVTGAARGIGAELARRLHAR--GAKLALV--DLEEAELAALAAELG 54 (296)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC--CCEEEEE--eCCHHHHHHHHHHhc
Confidence 368999999999999999999876 4566654 357777777777664
No 181
>PRK07478 short chain dehydrogenase; Provisional
Probab=90.93 E-value=2 Score=40.15 Aligned_cols=63 Identities=19% Similarity=0.151 Sum_probs=39.3
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHH---HHhhCCCEEEE-cCcchHHHHHH
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQ---VKRFKPQVVAV-RNESLLDEIKE 142 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q---~~~f~P~~v~v-~~e~~~~~l~~ 142 (435)
.|++.|.|+||.||..+.+-+.+. .++|+.++ +|.+.+.+. .++...+...+ .|-...+.+++
T Consensus 6 ~k~~lItGas~giG~~ia~~l~~~--G~~v~~~~--r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 72 (254)
T PRK07478 6 GKVAIITGASSGIGRAAAKLFARE--GAKVVVGA--RRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKA 72 (254)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHH
Confidence 368999999999999999988876 46777654 445554444 33334444333 34333444443
No 182
>PRK06841 short chain dehydrogenase; Provisional
Probab=90.91 E-value=2 Score=39.94 Aligned_cols=33 Identities=27% Similarity=0.326 Sum_probs=27.5
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEec
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa 110 (435)
.|+|.|.|+||.||..+...+.+. .++|+.++-
T Consensus 15 ~k~vlItGas~~IG~~la~~l~~~--G~~Vi~~~r 47 (255)
T PRK06841 15 GKVAVVTGGASGIGHAIAELFAAK--GARVALLDR 47 (255)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC--CCEEEEEeC
Confidence 368999999999999999998875 578876653
No 183
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=90.89 E-value=0.32 Score=49.44 Aligned_cols=33 Identities=15% Similarity=0.167 Sum_probs=29.1
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEecc
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG 111 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~ 111 (435)
|+|.|+|+||+||..+...+.++ .++|++++-.
T Consensus 22 ~~IlVtGgtGfIG~~l~~~L~~~--G~~V~~v~r~ 54 (370)
T PLN02695 22 LRICITGAGGFIASHIARRLKAE--GHYIIASDWK 54 (370)
T ss_pred CEEEEECCccHHHHHHHHHHHhC--CCEEEEEEec
Confidence 58999999999999999999885 6889998743
No 184
>PRK07832 short chain dehydrogenase; Provisional
Probab=90.87 E-value=2.2 Score=40.59 Aligned_cols=44 Identities=23% Similarity=0.162 Sum_probs=32.3
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f 124 (435)
|++.|.|+||.||......+.+. .++|+.+ ++|.+.+.+.+.+.
T Consensus 1 k~vlItGas~giG~~la~~la~~--G~~vv~~--~r~~~~~~~~~~~~ 44 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQ--GAELFLT--DRDADGLAQTVADA 44 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEE--eCCHHHHHHHHHHH
Confidence 47999999999999999998875 5677665 34556655444443
No 185
>PRK12937 short chain dehydrogenase; Provisional
Probab=90.86 E-value=3.5 Score=37.91 Aligned_cols=83 Identities=14% Similarity=0.135 Sum_probs=48.1
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHH---HHHHHHHhhCCCEEEE-cCcchHHHHHHHHhcCCCCc
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNIT---LLADQVKRFKPQVVAV-RNESLLDEIKEALANVEEKP 151 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~---~L~~q~~~f~P~~v~v-~~e~~~~~l~~~l~~~~~~~ 151 (435)
.|+|.|.|+||.||....+.+.+. .++|+.+ .+++-+ .+.+..+.+..+...+ .|-...+.+++.+.
T Consensus 5 ~~~vlItG~~~~iG~~la~~l~~~--g~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 75 (245)
T PRK12937 5 NKVAIVTGASRGIGAAIARRLAAD--GFAVAVN-YAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRLFD------ 75 (245)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCEEEEe-cCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH------
Confidence 368999999999999999998876 4566654 344433 3334444444333332 34333444444321
Q ss_pred eEEechhHHHHHhcCCCCCEEEEec
Q 013846 152 EILAGEQGVIEAARHPDAVTVVTGI 176 (435)
Q Consensus 152 ~v~~G~egl~~l~~~~~~D~Vv~AI 176 (435)
.+.+ ....+|.|++..
T Consensus 76 -------~~~~--~~~~id~vi~~a 91 (245)
T PRK12937 76 -------AAET--AFGRIDVLVNNA 91 (245)
T ss_pred -------HHHH--HcCCCCEEEECC
Confidence 1111 123688988874
No 186
>PRK07831 short chain dehydrogenase; Provisional
Probab=90.80 E-value=3.8 Score=38.55 Aligned_cols=42 Identities=26% Similarity=0.264 Sum_probs=30.0
Q ss_pred CeeEEEEecCCh-HhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHH
Q 013846 76 PKPISVLGSTGS-IGTQTLDIVAEHEDKFRVVALAAGSNITLLADQV 121 (435)
Q Consensus 76 ~k~I~IlGSTGS-IG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~ 121 (435)
.|++.|.|+||| ||..+...+.+. .++|+... +|.+.+.+..
T Consensus 17 ~k~vlItG~sg~gIG~~ia~~l~~~--G~~V~~~~--~~~~~~~~~~ 59 (262)
T PRK07831 17 GKVVLVTAAAGTGIGSATARRALEE--GARVVISD--IHERRLGETA 59 (262)
T ss_pred CCEEEEECCCcccHHHHHHHHHHHc--CCEEEEEe--CCHHHHHHHH
Confidence 478999999996 999999998876 45666543 4555554433
No 187
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=90.77 E-value=1.8 Score=37.68 Aligned_cols=47 Identities=19% Similarity=0.274 Sum_probs=33.7
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCC
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKP 126 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P 126 (435)
.++|+|+|+ |.+|.....-+++.. ..+|.. . .+|.+.+.+.++++..
T Consensus 19 ~~~i~iiG~-G~~g~~~a~~l~~~g-~~~v~v-~-~r~~~~~~~~~~~~~~ 65 (155)
T cd01065 19 GKKVLILGA-GGAARAVAYALAELG-AAKIVI-V-NRTLEKAKALAERFGE 65 (155)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCC-CCEEEE-E-cCCHHHHHHHHHHHhh
Confidence 468999997 999999999888763 233333 2 4677777777776653
No 188
>PRK09242 tropinone reductase; Provisional
Probab=90.74 E-value=2.4 Score=39.70 Aligned_cols=45 Identities=16% Similarity=0.156 Sum_probs=33.4
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f 124 (435)
.|++.|.|+||.||..+.+.+.+. .++|+.+. +|.+.+.+...++
T Consensus 9 ~k~~lItGa~~gIG~~~a~~l~~~--G~~v~~~~--r~~~~~~~~~~~l 53 (257)
T PRK09242 9 GQTALITGASKGIGLAIAREFLGL--GADVLIVA--RDADALAQARDEL 53 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHc--CCEEEEEe--CCHHHHHHHHHHH
Confidence 378999999999999999999875 56776664 4555555554443
No 189
>PRK06198 short chain dehydrogenase; Provisional
Probab=90.73 E-value=2.1 Score=39.90 Aligned_cols=31 Identities=26% Similarity=0.221 Sum_probs=24.9
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceE-EEEE
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFR-VVAL 108 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~-VvaL 108 (435)
.|+|.|.|+||.||.+..+.+.+. ..+ |+.+
T Consensus 6 ~k~vlItGa~g~iG~~la~~l~~~--G~~~V~~~ 37 (260)
T PRK06198 6 GKVALVTGGTQGLGAAIARAFAER--GAAGLVIC 37 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHC--CCCeEEEE
Confidence 368999999999999999999876 345 4443
No 190
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=90.64 E-value=2.7 Score=38.44 Aligned_cols=106 Identities=26% Similarity=0.338 Sum_probs=63.4
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHH------hhCCCEEEEcCcchHHHHHHHHhcCCCCc
Q 013846 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVK------RFKPQVVAVRNESLLDEIKEALANVEEKP 151 (435)
Q Consensus 78 ~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~------~f~P~~v~v~~e~~~~~l~~~l~~~~~~~ 151 (435)
||+|.|. |-||+..++.+.+. ..++++++..-...+.++.+.+ .|.+. +...++. +.-.+..+
T Consensus 2 kv~I~G~-GriGr~v~~~~~~~-~~~~lvai~d~~~~~~~a~ll~~Ds~hg~~~~~-v~~~~~~--------l~i~g~~i 70 (149)
T smart00846 2 KVGINGF-GRIGRLVLRALLER-PDIEVVAINDLTDPETLAHLLKYDSVHGRFPGE-VEVDEDG--------LIVNGKKI 70 (149)
T ss_pred EEEEECc-CHHHHHHHHHHHhC-CCCEEEEeecCCCHHHHHHHhcccCCCCCCCCc-EEEeCCE--------EEECCEEE
Confidence 7999998 99999999998876 4689999876567787777665 22222 2111111 00011123
Q ss_pred eEEechhHHHHHh-cCCCCCEEEEecccccCcHHHH-HHHHcC-Ccee
Q 013846 152 EILAGEQGVIEAA-RHPDAVTVVTGIVGCAGLKPTV-AAIEAG-KDIA 196 (435)
Q Consensus 152 ~v~~G~egl~~l~-~~~~~D~Vv~AIvG~aGL~pt~-~Ai~~g-K~ia 196 (435)
.++. +....++- ...++|+||.+ +|.-+-.... .-++.| |+|.
T Consensus 71 ~~~~-~~~p~~~~w~~~gvDiVie~-tG~f~~~~~~~~hl~~GakkVi 116 (149)
T smart00846 71 KVLA-ERDPANLPWKELGVDIVVEC-TGKFTTREKASAHLKAGAKKVI 116 (149)
T ss_pred EEEe-cCChHHCcccccCCeEEEec-cccccchHHHHHHHHcCCCEEE
Confidence 3332 22333321 23468999999 8876665544 456667 4443
No 191
>PRK05875 short chain dehydrogenase; Provisional
Probab=90.63 E-value=2.8 Score=39.71 Aligned_cols=40 Identities=20% Similarity=0.176 Sum_probs=30.5
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHH
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQ 120 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q 120 (435)
|++.|.|+||.||....+-+.+. .++|++++ ++.+.+.+.
T Consensus 8 k~vlItGasg~IG~~la~~l~~~--G~~V~~~~--r~~~~~~~~ 47 (276)
T PRK05875 8 RTYLVTGGGSGIGKGVAAGLVAA--GAAVMIVG--RNPDKLAAA 47 (276)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC--CCeEEEEe--CCHHHHHHH
Confidence 78999999999999999988875 57887765 344444333
No 192
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=90.62 E-value=2.9 Score=39.48 Aligned_cols=64 Identities=16% Similarity=0.109 Sum_probs=40.6
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh---CCCEEE-EcCcchHHHHHHH
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF---KPQVVA-VRNESLLDEIKEA 143 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f---~P~~v~-v~~e~~~~~l~~~ 143 (435)
.|++.|.|+||.||.+...-+.++ .++|+.+ .++.+.+.++..++ ..+... ..|-...+.++..
T Consensus 10 ~k~~lItGa~~~iG~~ia~~l~~~--G~~vv~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 77 (265)
T PRK07097 10 GKIALITGASYGIGFAIAKAYAKA--GATIVFN--DINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAM 77 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCeEEEE--eCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHH
Confidence 378999999999999999988876 5677665 34445555544443 333333 2444444444443
No 193
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=90.59 E-value=1.9 Score=41.43 Aligned_cols=93 Identities=16% Similarity=0.147 Sum_probs=60.0
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcc-hHHHHHHHHhcCCCCceEE
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNES-LLDEIKEALANVEEKPEIL 154 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~-~~~~l~~~l~~~~~~~~v~ 154 (435)
-.+|.|.|++|.+|..++.+.+.. ..+|++.+. +-++ .+.++++..+.+.-..+. ..+.++
T Consensus 144 g~~vlI~ga~g~vG~~aiqlA~~~--G~~vi~~~~--s~~~-~~~l~~~Ga~~vi~~~~~~~~~~v~------------- 205 (329)
T cd08294 144 GETVVVNGAAGAVGSLVGQIAKIK--GCKVIGCAG--SDDK-VAWLKELGFDAVFNYKTVSLEEALK------------- 205 (329)
T ss_pred CCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeC--CHHH-HHHHHHcCCCEEEeCCCccHHHHHH-------------
Confidence 368999999999999999999986 457777653 2233 345567777766543322 112222
Q ss_pred echhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCce
Q 013846 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195 (435)
Q Consensus 155 ~G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~i 195 (435)
++.. ..+|+|++.+.| ..+...+..++.+-++
T Consensus 206 -------~~~~-~gvd~vld~~g~-~~~~~~~~~l~~~G~i 237 (329)
T cd08294 206 -------EAAP-DGIDCYFDNVGG-EFSSTVLSHMNDFGRV 237 (329)
T ss_pred -------HHCC-CCcEEEEECCCH-HHHHHHHHhhccCCEE
Confidence 2222 358999998766 5666677777655444
No 194
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=90.56 E-value=2.9 Score=39.06 Aligned_cols=32 Identities=22% Similarity=0.305 Sum_probs=26.7
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLa 109 (435)
.|+|.|.|+||.||.++..-+.+. .++|+.+.
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~--g~~vi~~~ 33 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEE--GYRVAVAD 33 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEE
Confidence 468999999999999999999886 56776653
No 195
>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase
Probab=90.48 E-value=0.46 Score=45.32 Aligned_cols=49 Identities=18% Similarity=0.224 Sum_probs=36.6
Q ss_pred EEEecCChHhHHHHHHHHhCCCceEEEEEeccC-----CHHHHHHHHHhhCCCEEE
Q 013846 80 SVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGS-----NITLLADQVKRFKPQVVA 130 (435)
Q Consensus 80 ~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~-----N~~~L~~q~~~f~P~~v~ 130 (435)
.|.|+||+||++.++-+.+. .++|+.+..+. +.+.|.+..+.++|++|+
T Consensus 1 lItGa~GfiG~~l~~~L~~~--g~~v~~~~~~~~~Dl~~~~~l~~~~~~~~~d~Vi 54 (306)
T PLN02725 1 FVAGHRGLVGSAIVRKLEAL--GFTNLVLRTHKELDLTRQADVEAFFAKEKPTYVI 54 (306)
T ss_pred CcccCCCcccHHHHHHHHhC--CCcEEEeeccccCCCCCHHHHHHHHhccCCCEEE
Confidence 38999999999999999875 45666554433 455676777778898776
No 196
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=90.48 E-value=3.4 Score=38.22 Aligned_cols=83 Identities=23% Similarity=0.219 Sum_probs=48.6
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHH---HHHHhhCCCEEEE-cCcchHHHHHHHHhcCCCCc
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLA---DQVKRFKPQVVAV-RNESLLDEIKEALANVEEKP 151 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~---~q~~~f~P~~v~v-~~e~~~~~l~~~l~~~~~~~ 151 (435)
.|.+.|.|+||.||..+.+-+.+. ..+|+.+.. ++.+... ++.++...+.+.+ .|-...+.+.+.+.
T Consensus 3 ~k~~lVtG~s~giG~~~a~~l~~~--G~~vv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 73 (246)
T PRK12938 3 QRIAYVTGGMGGIGTSICQRLHKD--GFKVVAGCG-PNSPRRVKWLEDQKALGFDFIASEGNVGDWDSTKAAFD------ 73 (246)
T ss_pred CCEEEEECCCChHHHHHHHHHHHc--CCEEEEEcC-CChHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHH------
Confidence 367899999999999999999887 466776543 3333333 3333334344332 44444444444321
Q ss_pred eEEechhHHHHHhcCCCCCEEEEec
Q 013846 152 EILAGEQGVIEAARHPDAVTVVTGI 176 (435)
Q Consensus 152 ~v~~G~egl~~l~~~~~~D~Vv~AI 176 (435)
.+.+. ...+|+||+..
T Consensus 74 -------~~~~~--~~~id~li~~a 89 (246)
T PRK12938 74 -------KVKAE--VGEIDVLVNNA 89 (246)
T ss_pred -------HHHHH--hCCCCEEEECC
Confidence 11121 24689998874
No 197
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.44 E-value=2.5 Score=39.07 Aligned_cols=40 Identities=25% Similarity=0.162 Sum_probs=28.8
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHH
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLA 118 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~ 118 (435)
.++|.|.|+||.||.+..+-+.+. .++|+.+ ..++-+.+.
T Consensus 6 ~~~vlitGasg~iG~~l~~~l~~~--g~~v~~~-~~~~~~~~~ 45 (252)
T PRK06077 6 DKVVVVTGSGRGIGRAIAVRLAKE--GSLVVVN-AKKRAEEMN 45 (252)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHC--CCEEEEE-eCCChHHHH
Confidence 478999999999999999988765 5666654 333334333
No 198
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=90.38 E-value=2.3 Score=41.49 Aligned_cols=30 Identities=30% Similarity=0.408 Sum_probs=25.9
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 013846 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (435)
Q Consensus 78 ~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLa 109 (435)
+|.|.|+||+||....+-+.+. .++|+++.
T Consensus 2 ~vlVtGatG~iG~~l~~~L~~~--g~~V~~~~ 31 (338)
T PRK10675 2 RVLVTGGSGYIGSHTCVQLLQN--GHDVVILD 31 (338)
T ss_pred eEEEECCCChHHHHHHHHHHHC--CCeEEEEe
Confidence 6999999999999999988765 57888874
No 199
>PRK06197 short chain dehydrogenase; Provisional
Probab=90.36 E-value=2.2 Score=41.57 Aligned_cols=40 Identities=20% Similarity=0.159 Sum_probs=30.6
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHH
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLAD 119 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~ 119 (435)
.|+|.|.|+||.||..+.+.+.+. .++|+.+ .+|.+.+.+
T Consensus 16 ~k~vlItGas~gIG~~~a~~l~~~--G~~vi~~--~r~~~~~~~ 55 (306)
T PRK06197 16 GRVAVVTGANTGLGYETAAALAAK--GAHVVLA--VRNLDKGKA 55 (306)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHC--CCEEEEE--eCCHHHHHH
Confidence 378999999999999999988876 5677664 345555443
No 200
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=90.33 E-value=3 Score=40.75 Aligned_cols=95 Identities=13% Similarity=0.080 Sum_probs=57.7
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCce-EEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEEe
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKF-RVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f-~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~~ 155 (435)
.+|.|.|++|.+|..++.+.+.. .. +|++.+. +-+++....+++..+.+.-..+.. +.+
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~--G~~~Vi~~~~--s~~~~~~~~~~lGa~~vi~~~~~~---~~~------------- 215 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLL--GCSRVVGICG--SDEKCQLLKSELGFDAAINYKTDN---VAE------------- 215 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHc--CCCEEEEEcC--CHHHHHHHHHhcCCcEEEECCCCC---HHH-------------
Confidence 68999999999999999999876 45 5776543 234433223347776655433221 111
Q ss_pred chhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCcee
Q 013846 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (435)
Q Consensus 156 G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ia 196 (435)
.+.++.. ..+|+|++++.|. .+...+..++.+-++.
T Consensus 216 ---~i~~~~~-~gvd~vid~~g~~-~~~~~~~~l~~~G~iv 251 (345)
T cd08293 216 ---RLRELCP-EGVDVYFDNVGGE-ISDTVISQMNENSHII 251 (345)
T ss_pred ---HHHHHCC-CCceEEEECCCcH-HHHHHHHHhccCCEEE
Confidence 1222222 3589999987664 3566666676654443
No 201
>PLN00016 RNA-binding protein; Provisional
Probab=90.30 E-value=1.1 Score=45.37 Aligned_cols=36 Identities=17% Similarity=0.214 Sum_probs=30.5
Q ss_pred CCCeeEEEE----ecCChHhHHHHHHHHhCCCceEEEEEecc
Q 013846 74 DGPKPISVL----GSTGSIGTQTLDIVAEHEDKFRVVALAAG 111 (435)
Q Consensus 74 ~~~k~I~Il----GSTGSIG~qtLdVi~~~pd~f~VvaLaa~ 111 (435)
.++++|.|+ |+||+||....+-+.+. .++|++++-+
T Consensus 50 ~~~~~VLVt~~~~GatG~iG~~lv~~L~~~--G~~V~~l~R~ 89 (378)
T PLN00016 50 VEKKKVLIVNTNSGGHAFIGFYLAKELVKA--GHEVTLFTRG 89 (378)
T ss_pred cccceEEEEeccCCCceeEhHHHHHHHHHC--CCEEEEEecC
Confidence 445789999 99999999999988775 6899998754
No 202
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=90.28 E-value=3.5 Score=40.94 Aligned_cols=104 Identities=15% Similarity=0.263 Sum_probs=62.6
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEEe
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~~ 155 (435)
..+|.|+|+ |+||..++.+.+.. ..+|+++. ++-+++ +.++++..+.+.-..+...+.+.+.+.. . .
T Consensus 167 g~~VlV~G~-G~vG~~a~~~a~~~--G~~vi~~~--~~~~~~-~~~~~~Ga~~~i~~~~~~~~~~~~~~~~------~-t 233 (349)
T TIGR03201 167 GDLVIVIGA-GGVGGYMVQTAKAM--GAAVVAID--IDPEKL-EMMKGFGADLTLNPKDKSAREVKKLIKA------F-A 233 (349)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHc--CCeEEEEc--CCHHHH-HHHHHhCCceEecCccccHHHHHHHHHh------h-c
Confidence 468999999 99999999999987 34677653 344554 4567888766543322222223322211 0 0
Q ss_pred chhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCceee
Q 013846 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIAL 197 (435)
Q Consensus 156 G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaL 197 (435)
+..|+ ....|.|+.+..+..++.-.+.+++.|-++.+
T Consensus 234 ~~~g~-----d~~~d~v~d~~g~~~~~~~~~~~l~~~G~iv~ 270 (349)
T TIGR03201 234 KARGL-----RSTGWKIFECSGSKPGQESALSLLSHGGTLVV 270 (349)
T ss_pred ccCCC-----CCCcCEEEECCCChHHHHHHHHHHhcCCeEEE
Confidence 11111 01145888887666667667778877766554
No 203
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=90.22 E-value=2.8 Score=40.50 Aligned_cols=94 Identities=9% Similarity=0.059 Sum_probs=59.7
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEEe
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~~ 155 (435)
..+|.|.|++|++|..++.+.+.. ..+|++++. +-+.. +.++++..+.+.-.++.. +.
T Consensus 140 ~~~vlI~ga~g~ig~~~~~~a~~~--g~~v~~~~~--~~~~~-~~~~~~g~~~v~~~~~~~---~~-------------- 197 (329)
T cd08250 140 GETVLVTAAAGGTGQFAVQLAKLA--GCHVIGTCS--SDEKA-EFLKSLGCDRPINYKTED---LG-------------- 197 (329)
T ss_pred CCEEEEEeCccHHHHHHHHHHHHc--CCeEEEEeC--cHHHH-HHHHHcCCceEEeCCCcc---HH--------------
Confidence 358999999999999999999987 456776653 33333 344667765554332211 11
Q ss_pred chhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCce
Q 013846 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195 (435)
Q Consensus 156 G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~i 195 (435)
+.+.++.. ..+|.|++.+.| ..+...+..+..+-++
T Consensus 198 --~~~~~~~~-~~vd~v~~~~g~-~~~~~~~~~l~~~g~~ 233 (329)
T cd08250 198 --EVLKKEYP-KGVDVVYESVGG-EMFDTCVDNLALKGRL 233 (329)
T ss_pred --HHHHHhcC-CCCeEEEECCcH-HHHHHHHHHhccCCeE
Confidence 11222222 358999998655 6777778888666543
No 204
>TIGR01746 Thioester-redct thioester reductase domain. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.
Probab=90.16 E-value=0.75 Score=44.39 Aligned_cols=36 Identities=19% Similarity=0.402 Sum_probs=29.6
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCC
Q 013846 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSN 113 (435)
Q Consensus 78 ~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N 113 (435)
+|.|.|+||+||...++-+.+.....+|+++.-..+
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~ 36 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAAS 36 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCC
Confidence 588999999999999999888755578999875444
No 205
>PRK08339 short chain dehydrogenase; Provisional
Probab=90.10 E-value=3.1 Score=39.71 Aligned_cols=45 Identities=20% Similarity=0.160 Sum_probs=33.2
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f 124 (435)
.|.+.|.|+||.||..+.+-+.+. .++|+.+ .+|.+.+.+..+++
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~--G~~V~~~--~r~~~~~~~~~~~~ 52 (263)
T PRK08339 8 GKLAFTTASSKGIGFGVARVLARA--GADVILL--SRNEENLKKAREKI 52 (263)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHC--CCEEEEE--eCCHHHHHHHHHHH
Confidence 468999999999999999998876 5677654 35666665544443
No 206
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=90.10 E-value=2.1 Score=42.05 Aligned_cols=46 Identities=11% Similarity=0.282 Sum_probs=34.8
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh
Q 013846 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (435)
Q Consensus 75 ~~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f 124 (435)
..|++.|.|+||.||.++...+.+. .++|+.+. +|.+.+.+...+.
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~L~~~--G~~V~~~~--r~~~~~~~~~~~l 50 (322)
T PRK07453 5 AKGTVIITGASSGVGLYAAKALAKR--GWHVIMAC--RNLKKAEAAAQEL 50 (322)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHC--CCEEEEEE--CCHHHHHHHHHHh
Confidence 3578999999999999999988876 46776653 5666665555544
No 207
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=90.07 E-value=3.5 Score=37.82 Aligned_cols=42 Identities=24% Similarity=0.245 Sum_probs=31.3
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHH
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQ 120 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q 120 (435)
+|++.|.|+||.||.++.+-+.+. .++|+.+.-..+ +.+.+.
T Consensus 2 ~k~vlItG~s~~iG~~la~~l~~~--g~~vi~~~r~~~-~~~~~~ 43 (245)
T PRK12824 2 KKIALVTGAKRGIGSAIARELLND--GYRVIATYFSGN-DCAKDW 43 (245)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHc--CCEEEEEeCCcH-HHHHHH
Confidence 578999999999999999998876 478877754333 444333
No 208
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=90.06 E-value=2.7 Score=39.04 Aligned_cols=31 Identities=26% Similarity=0.313 Sum_probs=25.8
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLa 109 (435)
|++.|.|+||.||....+.+.+. .++|+.+.
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~--G~~v~~~~ 31 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKD--GFAVAVAD 31 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHC--CCEEEEEe
Confidence 57999999999999999988876 56777664
No 209
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=89.95 E-value=1.8 Score=46.35 Aligned_cols=56 Identities=16% Similarity=0.219 Sum_probs=40.1
Q ss_pred cccCCCCCCeeEEEEecCChHhHHHHHHHHhC-------CCceEEEEEeccCCHHHHHHHHHhhC
Q 013846 68 TFRKTWDGPKPISVLGSTGSIGTQTLDIVAEH-------EDKFRVVALAAGSNITLLADQVKRFK 125 (435)
Q Consensus 68 ~~~~~~~~~k~I~IlGSTGSIG~qtLdVi~~~-------pd~f~VvaLaa~~N~~~L~~q~~~f~ 125 (435)
...++|..|-||+|+|++|.||..++-.+... +---+++-+ ..|.+++.-++.++.
T Consensus 92 ~~~~~~~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvli--D~~~~~a~G~amDL~ 154 (444)
T PLN00112 92 EETKSWKKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGS--ERSKQALEGVAMELE 154 (444)
T ss_pred hhhhcCCCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEE--cCCcchhHHHHHHHH
Confidence 34588999999999999999999998877653 211234433 457777777776553
No 210
>PRK05650 short chain dehydrogenase; Provisional
Probab=89.93 E-value=3.6 Score=39.00 Aligned_cols=43 Identities=14% Similarity=0.134 Sum_probs=31.6
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHh
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR 123 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~ 123 (435)
|+|.|.|+||.||....+.+.+. .++|+.+. ++.+.+.+...+
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~--g~~V~~~~--r~~~~~~~~~~~ 43 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWARE--GWRLALAD--VNEEGGEETLKL 43 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHHH
Confidence 47999999999999999988876 56676543 455655554443
No 211
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=89.93 E-value=1.1 Score=44.29 Aligned_cols=32 Identities=19% Similarity=0.285 Sum_probs=27.8
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEec
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa 110 (435)
|+|.|.|+||+||....+-+.+. .++|+++.-
T Consensus 7 ~~vlVTGatGfiG~~l~~~L~~~--G~~V~~~~r 38 (340)
T PLN02653 7 KVALITGITGQDGSYLTEFLLSK--GYEVHGIIR 38 (340)
T ss_pred CEEEEECCCCccHHHHHHHHHHC--CCEEEEEec
Confidence 57999999999999999998875 678988864
No 212
>PLN02503 fatty acyl-CoA reductase 2
Probab=89.92 E-value=1.9 Score=47.81 Aligned_cols=40 Identities=15% Similarity=0.205 Sum_probs=31.5
Q ss_pred CCCeeEEEEecCChHhHHHHHHH-HhCCCceEEEEEeccCC
Q 013846 74 DGPKPISVLGSTGSIGTQTLDIV-AEHEDKFRVVALAAGSN 113 (435)
Q Consensus 74 ~~~k~I~IlGSTGSIG~qtLdVi-~~~pd~f~VvaLaa~~N 113 (435)
-..|+|.|.|+||++|+..++-+ +..|+.-+|.+|.=.++
T Consensus 117 ~~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~ 157 (605)
T PLN02503 117 LRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKD 157 (605)
T ss_pred hcCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCC
Confidence 34589999999999999999755 45787668888865443
No 213
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=89.90 E-value=0.4 Score=48.76 Aligned_cols=33 Identities=30% Similarity=0.619 Sum_probs=29.6
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEecc
Q 013846 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG 111 (435)
Q Consensus 78 ~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~ 111 (435)
||+|+|+||.+|+..++.+.+||+ |+|+++...
T Consensus 2 kVaIvGatG~~G~~L~~~l~~~~~-~~l~~v~~~ 34 (341)
T TIGR00978 2 RVAVLGATGLVGQKFVKLLAKHPY-FELAKVVAS 34 (341)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCC-ceEEEEEEC
Confidence 799999999999999999999876 899988653
No 214
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=89.89 E-value=3 Score=38.94 Aligned_cols=45 Identities=20% Similarity=0.121 Sum_probs=33.2
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f 124 (435)
.|++.|.|+||.||.++..-+.+. .++|+.+ ++|.+.+.+...+.
T Consensus 9 ~k~~lItGas~giG~~ia~~L~~~--G~~vvl~--~r~~~~~~~~~~~l 53 (254)
T PRK08085 9 GKNILITGSAQGIGFLLATGLAEY--GAEIIIN--DITAERAELAVAKL 53 (254)
T ss_pred CCEEEEECCCChHHHHHHHHHHHc--CCEEEEE--cCCHHHHHHHHHHH
Confidence 478999999999999999999876 5677754 34555555544443
No 215
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.84 E-value=3.4 Score=38.14 Aligned_cols=45 Identities=20% Similarity=0.139 Sum_probs=32.8
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f 124 (435)
.+++.|.|+||.||....+-+.+. .++|+.+. +|-+.+.+.+.+.
T Consensus 7 ~~~vlVtG~sg~iG~~l~~~L~~~--G~~Vi~~~--r~~~~~~~~~~~~ 51 (239)
T PRK07666 7 GKNALITGAGRGIGRAVAIALAKE--GVNVGLLA--RTEENLKAVAEEV 51 (239)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHHHH
Confidence 368999999999999999988765 56777754 4555555544433
No 216
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=89.82 E-value=3.3 Score=41.54 Aligned_cols=97 Identities=13% Similarity=0.097 Sum_probs=58.8
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEEe
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~~ 155 (435)
-.+|.|.|++|.||..++.+.+.. ..+|++.+. +-+++....+++..+.+.-..+. ..+.+.
T Consensus 159 g~~VlV~GaaG~vG~~aiqlAk~~--G~~Vi~~~~--~~~k~~~~~~~lGa~~vi~~~~~--~~~~~~------------ 220 (348)
T PLN03154 159 GDSVFVSAASGAVGQLVGQLAKLH--GCYVVGSAG--SSQKVDLLKNKLGFDEAFNYKEE--PDLDAA------------ 220 (348)
T ss_pred CCEEEEecCccHHHHHHHHHHHHc--CCEEEEEcC--CHHHHHHHHHhcCCCEEEECCCc--ccHHHH------------
Confidence 368999999999999999999986 456776542 33443322236777666533211 011111
Q ss_pred chhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCcee
Q 013846 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (435)
Q Consensus 156 G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ia 196 (435)
+.++.. ..+|+|++++.| ..+...+..++.|-++.
T Consensus 221 ----i~~~~~-~gvD~v~d~vG~-~~~~~~~~~l~~~G~iv 255 (348)
T PLN03154 221 ----LKRYFP-EGIDIYFDNVGG-DMLDAALLNMKIHGRIA 255 (348)
T ss_pred ----HHHHCC-CCcEEEEECCCH-HHHHHHHHHhccCCEEE
Confidence 111212 258999998755 46666677776665544
No 217
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=89.80 E-value=1.6 Score=43.37 Aligned_cols=34 Identities=24% Similarity=0.404 Sum_probs=27.4
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLa 109 (435)
.|+|.|.|+||+||.+..+-+.+..+..+|+++.
T Consensus 4 ~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~ 37 (324)
T TIGR03589 4 NKSILITGGTGSFGKAFISRLLENYNPKKIIIYS 37 (324)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEc
Confidence 3679999999999999999888754346777764
No 218
>PRK06139 short chain dehydrogenase; Provisional
Probab=89.76 E-value=2 Score=43.23 Aligned_cols=63 Identities=21% Similarity=0.301 Sum_probs=40.8
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHH---HhhCCCEEEE-cCcchHHHHHH
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQV---KRFKPQVVAV-RNESLLDEIKE 142 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~---~~f~P~~v~v-~~e~~~~~l~~ 142 (435)
.|.|.|.|+||.||..+...+.+. .++|+.++ +|.+.|.+.. ++...+..++ .|-...+.++.
T Consensus 7 ~k~vlITGAs~GIG~aia~~la~~--G~~Vvl~~--R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~ 73 (330)
T PRK06139 7 GAVVVITGASSGIGQATAEAFARR--GARLVLAA--RDEEALQAVAEECRALGAEVLVVPTDVTDADQVKA 73 (330)
T ss_pred CCEEEEcCCCCHHHHHHHHHHHHC--CCEEEEEE--CCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHH
Confidence 478999999999999999999886 46676543 5666665444 4445554332 34333333433
No 219
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=89.72 E-value=1.4 Score=45.02 Aligned_cols=42 Identities=19% Similarity=0.333 Sum_probs=27.9
Q ss_pred EEEEecCChHhHHHHHHHHhC-CCceEEEEEeccCCHHHHHHHHHhh
Q 013846 79 ISVLGSTGSIGTQTLDIVAEH-EDKFRVVALAAGSNITLLADQVKRF 124 (435)
Q Consensus 79 I~IlGSTGSIG~qtLdVi~~~-pd~f~VvaLaa~~N~~~L~~q~~~f 124 (435)
|.|.|+|||||.....-+.++ |.+ |+.+. +|-..|.+.-+++
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~--lil~d--~~E~~l~~l~~~l 43 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKK--LILFD--RDENKLYELEREL 43 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SE--EEEEE--S-HHHHHHHHHHC
T ss_pred CEEEccccHHHHHHHHHHHhcCCCe--EEEeC--CChhHHHHHHHHH
Confidence 679999999999988777654 433 44333 5556666666666
No 220
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=89.69 E-value=8.1 Score=39.70 Aligned_cols=45 Identities=20% Similarity=0.270 Sum_probs=30.7
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCc-eEEEEEeccCCHHHHHHHHHhh
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDK-FRVVALAAGSNITLLADQVKRF 124 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~-f~VvaLaa~~N~~~L~~q~~~f 124 (435)
.+|.|+|++|.||..++.+.+..--. -+|++.. .+-+++ +.++++
T Consensus 177 ~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~--~~~~r~-~~a~~~ 222 (410)
T cd08238 177 GNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTD--VNDERL-ARAQRL 222 (410)
T ss_pred CEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEc--CCHHHH-HHHHHh
Confidence 58999999999999999998875211 2566653 344444 345554
No 221
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=89.64 E-value=2.9 Score=39.51 Aligned_cols=92 Identities=20% Similarity=0.214 Sum_probs=59.6
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEEe
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~~ 155 (435)
..+|.|.|++|++|..++.+.+.. .++|++++... +. .+.++++..+.+....++ +.+
T Consensus 143 g~~vlV~ga~g~~g~~~~~~a~~~--g~~v~~~~~~~--~~-~~~~~~~g~~~~~~~~~~----~~~------------- 200 (320)
T cd08243 143 GDTLLIRGGTSSVGLAALKLAKAL--GATVTATTRSP--ER-AALLKELGADEVVIDDGA----IAE------------- 200 (320)
T ss_pred CCEEEEEcCCChHHHHHHHHHHHc--CCEEEEEeCCH--HH-HHHHHhcCCcEEEecCcc----HHH-------------
Confidence 368999999999999999999987 46777765443 33 345567776665432211 111
Q ss_pred chhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCce
Q 013846 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195 (435)
Q Consensus 156 G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~i 195 (435)
.+.++ ...+|++++.+.| ..+...+..+..+-++
T Consensus 201 ---~i~~~--~~~~d~vl~~~~~-~~~~~~~~~l~~~g~~ 234 (320)
T cd08243 201 ---QLRAA--PGGFDKVLELVGT-ATLKDSLRHLRPGGIV 234 (320)
T ss_pred ---HHHHh--CCCceEEEECCCh-HHHHHHHHHhccCCEE
Confidence 12222 2358999987765 5677777777665443
No 222
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=89.63 E-value=2.7 Score=43.43 Aligned_cols=139 Identities=18% Similarity=0.193 Sum_probs=82.2
Q ss_pred CCCCCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCc
Q 013846 72 TWDGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKP 151 (435)
Q Consensus 72 ~~~~~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~ 151 (435)
++..-++|.|+|++|.+|+.++.+.+... |..+.-++..+-..| ++++.-+.|.=-++.. +.+.
T Consensus 154 ~~~~g~~vLv~ggsggVG~~aiQlAk~~~--~~~v~t~~s~e~~~l---~k~lGAd~vvdy~~~~---~~e~-------- 217 (347)
T KOG1198|consen 154 KLSKGKSVLVLGGSGGVGTAAIQLAKHAG--AIKVVTACSKEKLEL---VKKLGADEVVDYKDEN---VVEL-------- 217 (347)
T ss_pred ccCCCCeEEEEeCCcHHHHHHHHHHHhcC--CcEEEEEcccchHHH---HHHcCCcEeecCCCHH---HHHH--------
Confidence 45556799999999999999999999875 555555555444333 5777766665322211 1111
Q ss_pred eEEechhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCceeecccceeeeccccchHHhhhcCCeEeecccchhhH
Q 013846 152 EILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAI 231 (435)
Q Consensus 152 ~v~~G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLANKESLV~aG~lv~~~a~~~~~~IiPVDSEHsAI 231 (435)
+.... ...+|+|++.+.|. -+......+..+.+.+ -+...|....+.-.. | .
T Consensus 218 --------~kk~~-~~~~DvVlD~vg~~-~~~~~~~~l~~~g~~~-----~i~~~~~~~~~~~~~--------~-----~ 269 (347)
T KOG1198|consen 218 --------IKKYT-GKGVDVVLDCVGGS-TLTKSLSCLLKGGGGA-----YIGLVGDELANYKLD--------D-----L 269 (347)
T ss_pred --------HHhhc-CCCccEEEECCCCC-ccccchhhhccCCceE-----EEEeccccccccccc--------c-----c
Confidence 11111 34699999999886 5555566666555444 344445444221111 1 1
Q ss_pred HHhhcCCCCCccceEEEEeeCCCCCCCC
Q 013846 232 FQCIQGLPEGALRRIILTASGGAFRDWP 259 (435)
Q Consensus 232 fQ~L~g~~~~~v~kIiLTASGGPFr~~~ 259 (435)
|| . ...++...++..|.+|+...
T Consensus 270 ~~----~-~~~~~~~~~~~~~~~~~~~~ 292 (347)
T KOG1198|consen 270 WQ----S-ANGIKLYSLGLKGVNYRWLY 292 (347)
T ss_pred hh----h-hhhhhheeeeeeccceeeee
Confidence 22 1 23456777788888887544
No 223
>PLN02253 xanthoxin dehydrogenase
Probab=89.62 E-value=3.4 Score=39.29 Aligned_cols=45 Identities=18% Similarity=0.205 Sum_probs=32.3
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f 124 (435)
.|++.|.|+||.||..+..-+.+. .++|+.+. ++-+.+.+.+.+.
T Consensus 18 ~k~~lItGas~gIG~~la~~l~~~--G~~v~~~~--~~~~~~~~~~~~~ 62 (280)
T PLN02253 18 GKVALVTGGATGIGESIVRLFHKH--GAKVCIVD--LQDDLGQNVCDSL 62 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHHc--CCEEEEEe--CCHHHHHHHHHHh
Confidence 468999999999999999988876 56777653 3344444444444
No 224
>PRK07576 short chain dehydrogenase; Provisional
Probab=89.57 E-value=3.3 Score=39.44 Aligned_cols=44 Identities=18% Similarity=0.179 Sum_probs=32.3
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHh
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR 123 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~ 123 (435)
.|+|.|.|+||.||....+-+.+. ..+|+++. ++.+.+.+...+
T Consensus 9 ~k~ilItGasggIG~~la~~l~~~--G~~V~~~~--r~~~~~~~~~~~ 52 (264)
T PRK07576 9 GKNVVVVGGTSGINLGIAQAFARA--GANVAVAS--RSQEKVDAAVAQ 52 (264)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHHH
Confidence 368999999999999999988875 56676654 445555544433
No 225
>PRK05854 short chain dehydrogenase; Provisional
Probab=89.57 E-value=2.6 Score=41.64 Aligned_cols=42 Identities=19% Similarity=0.089 Sum_probs=31.5
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHH
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQV 121 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~ 121 (435)
.|++.|.|+||.||..+...+.+. .++|+.+ .+|.+.+.+.+
T Consensus 14 gk~~lITGas~GIG~~~a~~La~~--G~~Vil~--~R~~~~~~~~~ 55 (313)
T PRK05854 14 GKRAVVTGASDGLGLGLARRLAAA--GAEVILP--VRNRAKGEAAV 55 (313)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHC--CCEEEEE--eCCHHHHHHHH
Confidence 478999999999999999999876 5677654 35655544433
No 226
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=89.55 E-value=3.6 Score=38.78 Aligned_cols=43 Identities=23% Similarity=0.220 Sum_probs=31.6
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh
Q 013846 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (435)
Q Consensus 78 ~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f 124 (435)
++.|.|++|.||.++..-+.+. .++|+.+ .+|-+.+.+...+.
T Consensus 2 ~vlItGas~gIG~aia~~l~~~--G~~V~~~--~r~~~~~~~~~~~l 44 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKK--GARVVIS--SRNEENLEKALKEL 44 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHc--CCEEEEE--eCCHHHHHHHHHHH
Confidence 6999999999999999988875 5676654 35556655554443
No 227
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=89.55 E-value=1.1 Score=41.43 Aligned_cols=55 Identities=13% Similarity=0.130 Sum_probs=42.0
Q ss_pred eeEEEEec-CChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEE
Q 013846 77 KPISVLGS-TGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAV 131 (435)
Q Consensus 77 k~I~IlGS-TGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v 131 (435)
+||+++|| +||.+...|+-+++....++++++..++.-..-..-+.+..+....+
T Consensus 1 mrI~~~~Sg~~~~~~~~l~~l~~~~~~~~iv~Vit~~~~~~~~~~~~~~~~~~~~~ 56 (181)
T PF00551_consen 1 MRIVFFGSGSGSFLKALLEALKARGHNVEIVLVITNPDKPRGRSRAIKNGIPAQVA 56 (181)
T ss_dssp EEEEEEESSSSHHHHHHHHHHHTTSSEEEEEEEEESSTTTHHHHHHHHTTHHEEEH
T ss_pred CEEEEEEcCCCHHHHHHHHHHHhCCCCceEEEEeccccccccccccccCCCCEEec
Confidence 58999987 77999999999998888889999988766555455566666555443
No 228
>PRK12746 short chain dehydrogenase; Provisional
Probab=89.51 E-value=2.8 Score=38.98 Aligned_cols=46 Identities=20% Similarity=0.179 Sum_probs=34.0
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f 124 (435)
.|+|.|.|+||.||....+-+.+. ..+|+.+. .+|.+.+.+...++
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~--G~~v~i~~-~r~~~~~~~~~~~~ 51 (254)
T PRK12746 6 GKVALVTGASRGIGRAIAMRLAND--GALVAIHY-GRNKQAADETIREI 51 (254)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCEEEEEc-CCCHHHHHHHHHHH
Confidence 378999999999999999988775 45665543 45566666665554
No 229
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=89.48 E-value=4.1 Score=37.32 Aligned_cols=40 Identities=28% Similarity=0.319 Sum_probs=30.7
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHH
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLAD 119 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~ 119 (435)
|.+.|.|+||.||..+.+-+.+. .++|+++.. ++-+.+.+
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~--G~~v~~~~r-~~~~~~~~ 40 (242)
T TIGR01829 1 RIALVTGGMGGIGTAICQRLAKD--GYRVAANCG-PNEERAEA 40 (242)
T ss_pred CEEEEECCCChHHHHHHHHHHHC--CCEEEEEeC-CCHHHHHH
Confidence 57899999999999999999875 567877654 45555444
No 230
>PRK05866 short chain dehydrogenase; Provisional
Probab=89.48 E-value=3.2 Score=40.66 Aligned_cols=43 Identities=30% Similarity=0.366 Sum_probs=32.9
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHh
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR 123 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~ 123 (435)
|+|.|.|+||-||....+.+.++ .++|+.++ +|.+.+.+...+
T Consensus 41 k~vlItGasggIG~~la~~La~~--G~~Vi~~~--R~~~~l~~~~~~ 83 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARR--GATVVAVA--RREDLLDAVADR 83 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEE--CCHHHHHHHHHH
Confidence 68999999999999999999886 56777653 456666554443
No 231
>PRK06179 short chain dehydrogenase; Provisional
Probab=89.42 E-value=2.7 Score=39.71 Aligned_cols=38 Identities=26% Similarity=0.331 Sum_probs=29.5
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHH
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLL 117 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L 117 (435)
.|+|.|.|+||.||.....-+.+. .++|++++ +|.+.+
T Consensus 4 ~~~vlVtGasg~iG~~~a~~l~~~--g~~V~~~~--r~~~~~ 41 (270)
T PRK06179 4 SKVALVTGASSGIGRATAEKLARA--GYRVFGTS--RNPARA 41 (270)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHC--CCEEEEEe--CChhhc
Confidence 468999999999999999888875 67887765 344443
No 232
>PRK08177 short chain dehydrogenase; Provisional
Probab=89.41 E-value=0.89 Score=41.90 Aligned_cols=33 Identities=18% Similarity=0.370 Sum_probs=28.0
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEec
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa 110 (435)
||++.|.|+||.||....+-+.+. .++|++++-
T Consensus 1 ~k~vlItG~sg~iG~~la~~l~~~--G~~V~~~~r 33 (225)
T PRK08177 1 KRTALIIGASRGLGLGLVDRLLER--GWQVTATVR 33 (225)
T ss_pred CCEEEEeCCCchHHHHHHHHHHhC--CCEEEEEeC
Confidence 578999999999999999888876 578887753
No 233
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=89.27 E-value=0.59 Score=39.88 Aligned_cols=33 Identities=48% Similarity=0.846 Sum_probs=29.4
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEecc
Q 013846 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG 111 (435)
Q Consensus 78 ~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~ 111 (435)
||+|+|+||-+|...++.+.++|+ |+++++...
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~-~~l~av~~~ 33 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPD-FEVVALAAS 33 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCC-ceEEEEEec
Confidence 589999999999999999999875 999999553
No 234
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=89.26 E-value=4.1 Score=42.61 Aligned_cols=106 Identities=22% Similarity=0.284 Sum_probs=81.0
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEEec
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~~G 156 (435)
.||.|+.-++++=+-.-+++...|+ .+|++.+ .|-....+++++++|+.+.+..|- -+.-|
T Consensus 2 irVlvVddsal~R~~i~~~l~~~~~-i~vv~~a--~ng~~a~~~~~~~~PDVi~ld~em----------------p~mdg 62 (350)
T COG2201 2 IRVLVVDDSALMRKVISDILNSDPD-IEVVGTA--RNGREAIDKVKKLKPDVITLDVEM----------------PVMDG 62 (350)
T ss_pred cEEEEEcCcHHHHHHHHHHHhcCCC-eEEEEec--CCHHHHHHHHHhcCCCEEEEeccc----------------ccccH
Confidence 4799999999999999999998876 6677766 567888999999999999985431 13346
Q ss_pred hhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCceeecccce
Q 013846 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKET 202 (435)
Q Consensus 157 ~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLANKES 202 (435)
-+.+.++.+....-+|+..-.+--|-.-|++|++.|.-=.+ .|++
T Consensus 63 l~~l~~im~~~p~pVimvsslt~~g~~~t~~al~~gAvD~i-~kp~ 107 (350)
T COG2201 63 LEALRKIMRLRPLPVIMVSSLTEEGAEATLEALELGAVDFI-AKPS 107 (350)
T ss_pred HHHHHHHhcCCCCcEEEEeccccccHHHHHHHHhcCcceee-cCCC
Confidence 66677766665666777666788889999999999944333 4444
No 235
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=89.21 E-value=3.9 Score=38.32 Aligned_cols=43 Identities=26% Similarity=0.274 Sum_probs=31.3
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHH
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVK 122 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~ 122 (435)
.|++.|.|+||.||.+..+-+.++ .++|+.+. +|.+.+.+..+
T Consensus 12 ~k~ilItGa~g~IG~~la~~l~~~--G~~V~~~~--r~~~~~~~~~~ 54 (259)
T PRK08213 12 GKTALVTGGSRGLGLQIAEALGEA--GARVVLSA--RKAEELEEAAA 54 (259)
T ss_pred CCEEEEECCCchHHHHHHHHHHHc--CCEEEEEe--CCHHHHHHHHH
Confidence 378999999999999999999876 45676543 45555544433
No 236
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.20 E-value=4.1 Score=37.40 Aligned_cols=44 Identities=16% Similarity=0.186 Sum_probs=32.4
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHh
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR 123 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~ 123 (435)
.|+|.|.|+||.||....+.+.+. .++|++++ ++-+.+.+..++
T Consensus 5 ~~~vlItGa~g~iG~~~a~~l~~~--G~~V~~~~--r~~~~~~~~~~~ 48 (238)
T PRK05786 5 GKKVAIIGVSEGLGYAVAYFALKE--GAQVCINS--RNENKLKRMKKT 48 (238)
T ss_pred CcEEEEECCCchHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHHH
Confidence 368999999999999999998875 67888764 344555444333
No 237
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=89.19 E-value=3.5 Score=40.14 Aligned_cols=92 Identities=17% Similarity=0.287 Sum_probs=58.9
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEEe
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~~ 155 (435)
..+|.|+|++|++|..++.+.+.. ..+|++++. ++ + .+.++++..+++...++....+
T Consensus 178 g~~vlI~g~~g~ig~~~~~~a~~~--g~~vi~~~~-~~--~-~~~~~~~g~~~~~~~~~~~~~~---------------- 235 (350)
T cd08274 178 GETVLVTGASGGVGSALVQLAKRR--GAIVIAVAG-AA--K-EEAVRALGADTVILRDAPLLAD---------------- 235 (350)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhc--CCEEEEEeC-ch--h-hHHHHhcCCeEEEeCCCccHHH----------------
Confidence 368999999999999999999987 466777663 22 2 3455677765443222221111
Q ss_pred chhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCce
Q 013846 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195 (435)
Q Consensus 156 G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~i 195 (435)
........+|+|++.+.| ..+...+.+++.+-++
T Consensus 236 -----~~~~~~~~~d~vi~~~g~-~~~~~~~~~l~~~G~~ 269 (350)
T cd08274 236 -----AKALGGEPVDVVADVVGG-PLFPDLLRLLRPGGRY 269 (350)
T ss_pred -----HHhhCCCCCcEEEecCCH-HHHHHHHHHhccCCEE
Confidence 111122358999998666 5677777777766543
No 238
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=89.18 E-value=3.1 Score=39.96 Aligned_cols=94 Identities=23% Similarity=0.349 Sum_probs=59.1
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEEe
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~~ 155 (435)
.++|.|.|++|++|..++.+.++. .++|++.+.. -++ .+.++++..+.+.-.++.. .
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~--g~~v~~~~~~--~~~-~~~~~~~g~~~v~~~~~~~----~-------------- 203 (326)
T cd08289 147 QGPVLVTGATGGVGSLAVSILAKL--GYEVVASTGK--ADA-ADYLKKLGAKEVIPREELQ----E-------------- 203 (326)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHC--CCeEEEEecC--HHH-HHHHHHcCCCEEEcchhHH----H--------------
Confidence 358999999999999999999987 5677766533 333 3444677765543221110 1
Q ss_pred chhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCcee
Q 013846 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (435)
Q Consensus 156 G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ia 196 (435)
+.+.++ ....+|.|++.+.| ..+...+.+++.+-++.
T Consensus 204 --~~~~~~-~~~~~d~vld~~g~-~~~~~~~~~l~~~G~~i 240 (326)
T cd08289 204 --ESIKPL-EKQRWAGAVDPVGG-KTLAYLLSTLQYGGSVA 240 (326)
T ss_pred --HHHHhh-ccCCcCEEEECCcH-HHHHHHHHHhhcCCEEE
Confidence 111122 12358999998665 67777788876665443
No 239
>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]
Probab=89.17 E-value=1.5 Score=45.45 Aligned_cols=52 Identities=33% Similarity=0.404 Sum_probs=38.6
Q ss_pred eeEEEEecCChHhHHHHHHHH-hCCCceEEEE---EeccCCHHHHHHHHHhhCCCEEEE
Q 013846 77 KPISVLGSTGSIGTQTLDIVA-EHEDKFRVVA---LAAGSNITLLADQVKRFKPQVVAV 131 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~-~~pd~f~Vva---Laa~~N~~~L~~q~~~f~P~~v~v 131 (435)
+++.|.|+.|+||.+-+.-+. ++|| ++|+. |+...|.+-|..... +|++.++
T Consensus 1 ~~iLVTGGaGFIGsnfvr~~~~~~~d-~~v~~~DkLTYAgn~~~l~~~~~--~~~~~fv 56 (340)
T COG1088 1 MKILVTGGAGFIGSNFVRYILNKHPD-DHVVNLDKLTYAGNLENLADVED--SPRYRFV 56 (340)
T ss_pred CcEEEecCcchHHHHHHHHHHhcCCC-ceEEEEecccccCCHHHHHhhhc--CCCceEE
Confidence 478999999999999887655 5666 65554 577889998876554 5666665
No 240
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.13 E-value=4 Score=38.23 Aligned_cols=38 Identities=21% Similarity=0.177 Sum_probs=29.1
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHH
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLL 117 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L 117 (435)
|++.|.|+||.||.++.+.+.+. .++|+.+. +++-+.+
T Consensus 8 k~~lItGas~gIG~~~a~~l~~~--G~~v~~~~-~~~~~~~ 45 (255)
T PRK06463 8 KVALITGGTRGIGRAIAEAFLRE--GAKVAVLY-NSAENEA 45 (255)
T ss_pred CEEEEeCCCChHHHHHHHHHHHC--CCEEEEEe-CCcHHHH
Confidence 78999999999999999998876 56776543 4444443
No 241
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=89.13 E-value=3.3 Score=42.91 Aligned_cols=111 Identities=19% Similarity=0.184 Sum_probs=67.0
Q ss_pred eeEEEEecCChHhHHHHHHHHh--CCCceEEEEEeccCCHHHHHHHHHhhCC-----CEEEEcCcchHHHHHHHHhcCCC
Q 013846 77 KPISVLGSTGSIGTQTLDIVAE--HEDKFRVVALAAGSNITLLADQVKRFKP-----QVVAVRNESLLDEIKEALANVEE 149 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~--~pd~f~VvaLaa~~N~~~L~~q~~~f~P-----~~v~v~~e~~~~~l~~~l~~~~~ 149 (435)
.||+|.|. |=||+..++++.+ +|++++|+|+---...+-++-..+-=.+ .-|...+.. +.-.+.
T Consensus 2 ~~IaInGf-GrIGR~~lr~l~e~~~~~~l~vvaind~~~~~~~ayll~ydS~hg~~~~~v~~~~~~--------l~v~g~ 72 (336)
T PRK13535 2 IRVAINGF-GRIGRNVLRALYESGRRAEITVVAINELADAEGMAHLLKYDTSHGRFAWDVRQERDQ--------LFVGDD 72 (336)
T ss_pred eEEEEECc-CHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEecCCE--------EEECCE
Confidence 48999999 9999999999876 3688999998655566666555431111 111111110 100012
Q ss_pred CceEEechhHHHHHh-cCCCCCEEEEecccccCcHHHHHHHHcC-Cceee
Q 013846 150 KPEILAGEQGVIEAA-RHPDAVTVVTGIVGCAGLKPTVAAIEAG-KDIAL 197 (435)
Q Consensus 150 ~~~v~~G~egl~~l~-~~~~~D~Vv~AIvG~aGL~pt~~Ai~~g-K~iaL 197 (435)
.++++.. ....++- ...++|+|+.+-.++.--.-.-.++++| |+|-+
T Consensus 73 ~i~v~~~-~~p~~~~w~~~gvDiVle~tG~~~s~~~a~~~l~aGAk~V~i 121 (336)
T PRK13535 73 AIRLLHE-RDIASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGAKKVLF 121 (336)
T ss_pred EEEEEEc-CCcccCcccccCCCEEEEccchhhhHHHHHHHHHcCCEEEEe
Confidence 2334322 2233321 1247999999988877777777889999 44444
No 242
>PRK08862 short chain dehydrogenase; Provisional
Probab=88.97 E-value=3.6 Score=38.81 Aligned_cols=63 Identities=11% Similarity=0.118 Sum_probs=40.8
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHH---HHHHhhCCCEEEE-cCcchHHHHHH
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLA---DQVKRFKPQVVAV-RNESLLDEIKE 142 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~---~q~~~f~P~~v~v-~~e~~~~~l~~ 142 (435)
.|++.|.|+|+-||.++...+.+. .++|+.+ ++|.+.+. +++++...+.+.+ .|-...+.++.
T Consensus 5 ~k~~lVtGas~GIG~aia~~la~~--G~~V~~~--~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~ 71 (227)
T PRK08862 5 SSIILITSAGSVLGRTISCHFARL--GATLILC--DQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRH 71 (227)
T ss_pred CeEEEEECCccHHHHHHHHHHHHC--CCEEEEE--cCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHH
Confidence 378999999999999999999886 5676654 34555554 4455555454333 34444444443
No 243
>PRK07775 short chain dehydrogenase; Provisional
Probab=88.95 E-value=4.7 Score=38.57 Aligned_cols=42 Identities=26% Similarity=0.297 Sum_probs=31.4
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHH
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQV 121 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~ 121 (435)
+|.+.|.|+||.||..+.+-+.+. .++|+.++ +|.+.+.+..
T Consensus 10 ~~~vlVtGa~g~iG~~la~~L~~~--G~~V~~~~--r~~~~~~~~~ 51 (274)
T PRK07775 10 RRPALVAGASSGIGAATAIELAAA--GFPVALGA--RRVEKCEELV 51 (274)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHH
Confidence 368999999999999999988876 56776654 3455554443
No 244
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=88.91 E-value=0.46 Score=45.49 Aligned_cols=32 Identities=13% Similarity=0.253 Sum_probs=26.9
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEecc
Q 013846 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG 111 (435)
Q Consensus 78 ~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~ 111 (435)
+|.|+|+||.||..+++-+.+. .++|.+++-.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~--g~~V~~~~R~ 32 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAA--SVPFLVASRS 32 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhC--CCcEEEEeCC
Confidence 5899999999999999988764 5788888743
No 245
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=88.81 E-value=1.2 Score=42.40 Aligned_cols=30 Identities=37% Similarity=0.500 Sum_probs=25.3
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 013846 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (435)
Q Consensus 78 ~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLa 109 (435)
+|.|+|+||+||....+-+.++ .++|+++.
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~--g~~V~~~~ 30 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLES--GHEVVVLD 30 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhC--CCeEEEEe
Confidence 5899999999999999988876 56787663
No 246
>PLN02214 cinnamoyl-CoA reductase
Probab=88.80 E-value=2.1 Score=42.89 Aligned_cols=33 Identities=24% Similarity=0.368 Sum_probs=28.2
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEec
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa 110 (435)
+|+|.|.|+||+||....+-+.+. .++|++++-
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~~~--G~~V~~~~r 42 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILLER--GYTVKGTVR 42 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC--cCEEEEEeC
Confidence 468999999999999999988875 588988763
No 247
>PRK08251 short chain dehydrogenase; Provisional
Probab=88.79 E-value=4.7 Score=37.37 Aligned_cols=41 Identities=15% Similarity=0.170 Sum_probs=30.4
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHH
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQ 120 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q 120 (435)
.|++.|.|+||.||....+-+.+.. .+|+.++ +|.+.+.+.
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g--~~v~~~~--r~~~~~~~~ 42 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKG--RDLALCA--RRTDRLEEL 42 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcC--CEEEEEe--CCHHHHHHH
Confidence 4689999999999999999998875 4666553 445554433
No 248
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=88.78 E-value=4.5 Score=37.90 Aligned_cols=32 Identities=22% Similarity=0.147 Sum_probs=26.9
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLa 109 (435)
.|+|.|.|+||.||..+.+.+.++ .++|+.+.
T Consensus 11 ~k~vlVtG~s~gIG~~la~~l~~~--G~~vv~~~ 42 (255)
T PRK06113 11 GKCAIITGAGAGIGKEIAITFATA--GASVVVSD 42 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC--CCeEEEEe
Confidence 479999999999999999999886 56676543
No 249
>PLN02996 fatty acyl-CoA reductase
Probab=88.72 E-value=1.6 Score=46.71 Aligned_cols=36 Identities=19% Similarity=0.214 Sum_probs=30.1
Q ss_pred CCeeEEEEecCChHhHHHHHH-HHhCCCceEEEEEec
Q 013846 75 GPKPISVLGSTGSIGTQTLDI-VAEHEDKFRVVALAA 110 (435)
Q Consensus 75 ~~k~I~IlGSTGSIG~qtLdV-i~~~pd~f~VvaLaa 110 (435)
..|+|.|.|+||+||+..++- ++..|+.-+|.+|.-
T Consensus 10 ~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR 46 (491)
T PLN02996 10 ENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLR 46 (491)
T ss_pred CCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEe
Confidence 347899999999999999976 566788778888874
No 250
>PRK07023 short chain dehydrogenase; Provisional
Probab=88.55 E-value=0.57 Score=43.49 Aligned_cols=33 Identities=15% Similarity=0.228 Sum_probs=27.6
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEec
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa 110 (435)
|+++.|.|+||.||.+...-+.+. .++|+.++-
T Consensus 1 ~~~vlItGasggiG~~ia~~l~~~--G~~v~~~~r 33 (243)
T PRK07023 1 AVRAIVTGHSRGLGAALAEQLLQP--GIAVLGVAR 33 (243)
T ss_pred CceEEEecCCcchHHHHHHHHHhC--CCEEEEEec
Confidence 457999999999999999998876 578877653
No 251
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=88.55 E-value=1.7 Score=44.99 Aligned_cols=34 Identities=21% Similarity=0.371 Sum_probs=30.2
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEec
Q 013846 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (435)
Q Consensus 75 ~~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa 110 (435)
+.++|.|.||||+||.-.++.+-+. .|+|.|..-
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~r--GY~V~gtVR 38 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSR--GYTVRGTVR 38 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhC--CCEEEEEEc
Confidence 5678999999999999999998876 899999764
No 252
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=88.53 E-value=0.53 Score=45.47 Aligned_cols=32 Identities=22% Similarity=0.384 Sum_probs=27.6
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEec
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa 110 (435)
|+|.|.|+||+||....+-+.+. .++|+++.-
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~~~--g~~V~~~~r 36 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLLQR--GYTVKATVR 36 (322)
T ss_pred CEEEEECChHHHHHHHHHHHHHC--CCEEEEEEc
Confidence 68999999999999999988876 578888763
No 253
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=88.52 E-value=4.7 Score=39.64 Aligned_cols=94 Identities=14% Similarity=0.072 Sum_probs=58.1
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHh-hCCCEEEEcC-cchHHHHHHHHhcCCCCceE
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR-FKPQVVAVRN-ESLLDEIKEALANVEEKPEI 153 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~-f~P~~v~v~~-e~~~~~l~~~l~~~~~~~~v 153 (435)
-.+|.|.|++|.+|..++.+.+.. ..+|++.+.. -++ .+.+++ +..+.+.-.+ +.. +.+.
T Consensus 152 g~~VlI~Ga~G~vG~~aiqlAk~~--G~~Vi~~~~~--~~~-~~~~~~~lGa~~vi~~~~~~~---~~~~---------- 213 (338)
T cd08295 152 GETVFVSAASGAVGQLVGQLAKLK--GCYVVGSAGS--DEK-VDLLKNKLGFDDAFNYKEEPD---LDAA---------- 213 (338)
T ss_pred CCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCC--HHH-HHHHHHhcCCceeEEcCCccc---HHHH----------
Confidence 368999999999999999999987 5677775532 233 334444 6666654322 111 1111
Q ss_pred EechhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCce
Q 013846 154 LAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195 (435)
Q Consensus 154 ~~G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~i 195 (435)
+.++.. ..+|+|++.+.| ..+...+.+++.+-++
T Consensus 214 ------i~~~~~-~gvd~v~d~~g~-~~~~~~~~~l~~~G~i 247 (338)
T cd08295 214 ------LKRYFP-NGIDIYFDNVGG-KMLDAVLLNMNLHGRI 247 (338)
T ss_pred ------HHHhCC-CCcEEEEECCCH-HHHHHHHHHhccCcEE
Confidence 112222 358999998655 5666677777665543
No 254
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=88.46 E-value=0.47 Score=44.73 Aligned_cols=30 Identities=27% Similarity=0.367 Sum_probs=26.0
Q ss_pred EEEEecCChHhHHHHHHHHhCCCceEEEEEec
Q 013846 79 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (435)
Q Consensus 79 I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa 110 (435)
|.|+|+||+||+...+.+.+. .++|++++-
T Consensus 1 vlVtGatG~iG~~l~~~L~~~--g~~V~~~~r 30 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKD--GHEVTILTR 30 (292)
T ss_pred CEEEcccchhhHHHHHHHHHc--CCEEEEEeC
Confidence 579999999999999988774 589999873
No 255
>PRK06125 short chain dehydrogenase; Provisional
Probab=88.44 E-value=3.9 Score=38.41 Aligned_cols=45 Identities=16% Similarity=0.240 Sum_probs=34.0
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f 124 (435)
.|++.|.|+||.||..+...+.+. .++|+++. +|.+.+.+...+.
T Consensus 7 ~k~vlItG~~~giG~~ia~~l~~~--G~~V~~~~--r~~~~~~~~~~~l 51 (259)
T PRK06125 7 GKRVLITGASKGIGAAAAEAFAAE--GCHLHLVA--RDADALEALAADL 51 (259)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHc--CCEEEEEe--CCHHHHHHHHHHH
Confidence 378999999999999999999886 56777664 5556665554443
No 256
>PRK06114 short chain dehydrogenase; Provisional
Probab=88.42 E-value=6 Score=37.18 Aligned_cols=51 Identities=14% Similarity=0.118 Sum_probs=35.2
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccC--CHHHHHHHHHhhCCCE
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGS--NITLLADQVKRFKPQV 128 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~--N~~~L~~q~~~f~P~~ 128 (435)
.|++.|.|+||.||..+.+-+.+. .++|+.+.-.. ..+.+.++.+....+.
T Consensus 8 ~k~~lVtG~s~gIG~~ia~~l~~~--G~~v~~~~r~~~~~~~~~~~~l~~~~~~~ 60 (254)
T PRK06114 8 GQVAFVTGAGSGIGQRIAIGLAQA--GADVALFDLRTDDGLAETAEHIEAAGRRA 60 (254)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC--CCEEEEEeCCcchHHHHHHHHHHhcCCce
Confidence 368999999999999999998875 57887765332 2344555555444333
No 257
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=88.28 E-value=0.58 Score=51.42 Aligned_cols=35 Identities=23% Similarity=0.414 Sum_probs=29.2
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEec
Q 013846 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (435)
Q Consensus 75 ~~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa 110 (435)
..++|.|.|+||+||+...+-+.+. ..++|+++.-
T Consensus 314 ~~~~VLVTGatGFIGs~Lv~~Ll~~-~g~~V~~l~r 348 (660)
T PRK08125 314 RRTRVLILGVNGFIGNHLTERLLRD-DNYEVYGLDI 348 (660)
T ss_pred cCCEEEEECCCchHHHHHHHHHHhC-CCcEEEEEeC
Confidence 3467999999999999999988764 2589999974
No 258
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=88.27 E-value=5.4 Score=36.69 Aligned_cols=43 Identities=19% Similarity=0.303 Sum_probs=31.2
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHh
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR 123 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~ 123 (435)
+++.|.|++|.||..+...+.+. .++|+.+. ++.+.+.+..++
T Consensus 6 ~~~lItG~~g~iG~~~a~~l~~~--G~~vi~~~--r~~~~~~~~~~~ 48 (253)
T PRK08217 6 KVIVITGGAQGLGRAMAEYLAQK--GAKLALID--LNQEKLEEAVAE 48 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHHH
Confidence 58999999999999999999886 45666543 444555444443
No 259
>KOG4777 consensus Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=88.23 E-value=0.38 Score=48.92 Aligned_cols=31 Identities=32% Similarity=0.677 Sum_probs=27.1
Q ss_pred eeEE-EEecCChHhHHHHHHHHhCCCceEEEEE
Q 013846 77 KPIS-VLGSTGSIGTQTLDIVAEHEDKFRVVAL 108 (435)
Q Consensus 77 k~I~-IlGSTGSIG~qtLdVi~~~pd~f~VvaL 108 (435)
|+++ |||+||++|+--+.++..||. |++.-|
T Consensus 4 kk~a~vlGaTGaVGQrFi~lLsdhP~-f~ikvL 35 (361)
T KOG4777|consen 4 KKSAPVLGATGAVGQRFISLLSDHPY-FSIKVL 35 (361)
T ss_pred ccccceeeccchhHHHHHHHhccCCc-ceeeee
Confidence 5666 999999999999999999986 777766
No 260
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=88.22 E-value=3.3 Score=42.89 Aligned_cols=100 Identities=25% Similarity=0.339 Sum_probs=65.2
Q ss_pred EEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEEechh
Q 013846 79 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQ 158 (435)
Q Consensus 79 I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~~G~e 158 (435)
|+|.|. |.||+..++.+.+. ++++|||+.- .+.+.++..+++++-+.+. ..+....++.+ .++.+ .|.
T Consensus 1 VaInG~-GrIGr~varav~~~-~d~elVaVnD-~~~~~~a~lA~~lgyds~~-~~~~~~~~~~~------~~l~v-~g~- 68 (333)
T TIGR01546 1 VGVNGY-GTIGKRVADAVTKQ-DDMKLVGVTK-TSPDFEAYRAKELGIPVYA-ASEEFIPRFEE------AGIEV-AGT- 68 (333)
T ss_pred CEEECC-cHHHHHHHHHHhhC-CCcEEEEEec-CChHHHHHHHHHhCCCEEe-ecCCcceEecc------CceEe-cCC-
Confidence 567776 89999999999887 5699999987 7788888888888766654 22111001111 12233 232
Q ss_pred HHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCC
Q 013846 159 GVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGK 193 (435)
Q Consensus 159 gl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK 193 (435)
+.++. .++|+|+.+-..+.+..---.-++.|+
T Consensus 69 -~eeLl--~~vDiVve~Tp~~~~~~na~~~~~~Ga 100 (333)
T TIGR01546 69 -LEDLL--EKVDIVVDATPGGIGAKNKPLYEKAGV 100 (333)
T ss_pred -HHHHh--hcCCEEEECCCCCCChhhHHHHHhCCc
Confidence 56665 369999998777777655445555553
No 261
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=88.18 E-value=3.8 Score=39.50 Aligned_cols=92 Identities=14% Similarity=0.134 Sum_probs=58.2
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceE-EEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEEe
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFR-VVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~-VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~~ 155 (435)
++|.|.|+ |.||..++.+.+.. ..+ |++. .++-+++ +.++++..+.+.-.+ ...
T Consensus 122 ~~VlV~G~-G~vG~~~~~~ak~~--G~~~Vi~~--~~~~~r~-~~a~~~Ga~~~i~~~-~~~------------------ 176 (280)
T TIGR03366 122 RRVLVVGA-GMLGLTAAAAAAAA--GAARVVAA--DPSPDRR-ELALSFGATALAEPE-VLA------------------ 176 (280)
T ss_pred CEEEEECC-CHHHHHHHHHHHHc--CCCEEEEE--CCCHHHH-HHHHHcCCcEecCch-hhH------------------
Confidence 58999986 99999999999876 455 5554 3444554 567888876544211 111
Q ss_pred chhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCce
Q 013846 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195 (435)
Q Consensus 156 G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~i 195 (435)
+.+.++.....+|+|+++..+-..+.-.+..++.+-++
T Consensus 177 --~~~~~~~~~~g~d~vid~~G~~~~~~~~~~~l~~~G~i 214 (280)
T TIGR03366 177 --ERQGGLQNGRGVDVALEFSGATAAVRACLESLDVGGTA 214 (280)
T ss_pred --HHHHHHhCCCCCCEEEECCCChHHHHHHHHHhcCCCEE
Confidence 11122222235899999876666677777777666443
No 262
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=88.18 E-value=1.1 Score=46.91 Aligned_cols=96 Identities=14% Similarity=0.210 Sum_probs=55.0
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEE
Q 013846 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (435)
Q Consensus 75 ~~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~ 154 (435)
+|.||+|+|+||..|.+.+.++.+||+ +++...+..+-.. +-..+..|...-..+- + .+.+
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~-ve~~~~ss~~~~g---~~~~~~~p~l~g~~~l------~---------~~~~ 61 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHPD-VELILISSRERAG---KPVSDVHPNLRGLVDL------P---------FQTI 61 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC-eEEEEeechhhcC---CchHHhCccccccccc------c---------cccC
Confidence 367899999999999999999999998 5644433322111 2234555544322210 0 0000
Q ss_pred echhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCc
Q 013846 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD 194 (435)
Q Consensus 155 ~G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ 194 (435)
- ..++ ...+.|+|+.|.-==+.-.-.-..++.|.+
T Consensus 62 -~---~~~~-~~~~~DvvFlalPhg~s~~~v~~l~~~g~~ 96 (349)
T COG0002 62 -D---PEKI-ELDECDVVFLALPHGVSAELVPELLEAGCK 96 (349)
T ss_pred -C---hhhh-hcccCCEEEEecCchhHHHHHHHHHhCCCe
Confidence 0 0112 234578888887655555555555655554
No 263
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=88.17 E-value=7.7 Score=37.72 Aligned_cols=97 Identities=16% Similarity=0.195 Sum_probs=60.9
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEE
Q 013846 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (435)
Q Consensus 75 ~~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~ 154 (435)
..++|.|+|+ |++|..++.+.++... .+|++.+.. -+.+. .++++..+.+.-.++...
T Consensus 167 ~~~~vlI~g~-~~vg~~~~~~a~~~g~-~~v~~~~~~--~~~~~-~~~~~g~~~~~~~~~~~~----------------- 224 (340)
T cd05284 167 PGSTVVVIGV-GGLGHIAVQILRALTP-ATVIAVDRS--EEALK-LAERLGADHVLNASDDVV----------------- 224 (340)
T ss_pred CCCEEEEEcC-cHHHHHHHHHHHHhCC-CcEEEEeCC--HHHHH-HHHHhCCcEEEcCCccHH-----------------
Confidence 3568999994 5599999999998632 667776533 33433 346777655543322211
Q ss_pred echhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCcee
Q 013846 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (435)
Q Consensus 155 ~G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ia 196 (435)
+.+.++.....+|+|++.+.|-..+...+.++..+-++.
T Consensus 225 ---~~i~~~~~~~~~dvvld~~g~~~~~~~~~~~l~~~g~~i 263 (340)
T cd05284 225 ---EEVRELTGGRGADAVIDFVGSDETLALAAKLLAKGGRYV 263 (340)
T ss_pred ---HHHHHHhCCCCCCEEEEcCCCHHHHHHHHHHhhcCCEEE
Confidence 222333333468999998776667777888887665443
No 264
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=88.08 E-value=2.4 Score=42.21 Aligned_cols=31 Identities=26% Similarity=0.395 Sum_probs=27.0
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLa 109 (435)
++|.|.|+||+||....+-+.+. .++|+++.
T Consensus 11 ~~vLVtG~~GfIG~~l~~~L~~~--G~~V~~~~ 41 (353)
T PLN02896 11 GTYCVTGATGYIGSWLVKLLLQR--GYTVHATL 41 (353)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC--CCEEEEEe
Confidence 47999999999999999998875 57888864
No 265
>PRK05876 short chain dehydrogenase; Provisional
Probab=88.08 E-value=5.5 Score=38.48 Aligned_cols=45 Identities=22% Similarity=0.181 Sum_probs=33.4
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f 124 (435)
.|.+.|.|+||.||....+-+.+. .++|+.. .+|.+.+.+.+.++
T Consensus 6 ~k~vlVTGas~gIG~ala~~La~~--G~~Vv~~--~r~~~~l~~~~~~l 50 (275)
T PRK05876 6 GRGAVITGGASGIGLATGTEFARR--GARVVLG--DVDKPGLRQAVNHL 50 (275)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCEEEEE--eCCHHHHHHHHHHH
Confidence 468999999999999999988876 5666653 35566666555544
No 266
>PRK06123 short chain dehydrogenase; Provisional
Probab=88.04 E-value=3.6 Score=38.05 Aligned_cols=41 Identities=24% Similarity=0.255 Sum_probs=29.4
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHH
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQ 120 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q 120 (435)
|.+.|.|+||.||.+..+-+.+. .+.|+ +...++-+.+.++
T Consensus 3 ~~~lVtG~~~~iG~~~a~~l~~~--G~~vv-~~~~~~~~~~~~~ 43 (248)
T PRK06123 3 KVMIITGASRGIGAATALLAAER--GYAVC-LNYLRNRDAAEAV 43 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHC--CCeEE-EecCCCHHHHHHH
Confidence 57999999999999998888775 45665 4444555544443
No 267
>PRK07062 short chain dehydrogenase; Provisional
Probab=87.88 E-value=4.3 Score=38.18 Aligned_cols=42 Identities=21% Similarity=0.249 Sum_probs=30.6
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHH
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQV 121 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~ 121 (435)
.|.+.|.|+||.||.....-+.+. .++|+.++ +|.+.+.+..
T Consensus 8 ~k~~lItGas~giG~~ia~~l~~~--G~~V~~~~--r~~~~~~~~~ 49 (265)
T PRK07062 8 GRVAVVTGGSSGIGLATVELLLEA--GASVAICG--RDEERLASAE 49 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCeEEEEe--CCHHHHHHHH
Confidence 368999999999999999988876 56676543 4555554433
No 268
>PRK07985 oxidoreductase; Provisional
Probab=87.73 E-value=5.5 Score=38.94 Aligned_cols=64 Identities=13% Similarity=0.007 Sum_probs=39.4
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccC---CHHHHHHHHHhhCCCEEE-EcCcchHHHHHH
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGS---NITLLADQVKRFKPQVVA-VRNESLLDEIKE 142 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~---N~~~L~~q~~~f~P~~v~-v~~e~~~~~l~~ 142 (435)
|++.|.|+||.||.++.+-+.+. .++|+.+.-.. +.+.+.+..++...+... ..|-...+.+..
T Consensus 50 k~vlITGas~gIG~aia~~L~~~--G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 117 (294)
T PRK07985 50 RKALVTGGDSGIGRAAAIAYARE--GADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARS 117 (294)
T ss_pred CEEEEECCCCcHHHHHHHHHHHC--CCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHH
Confidence 78999999999999999999886 57777643222 234444444444333322 234443344443
No 269
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=87.59 E-value=5.4 Score=38.89 Aligned_cols=94 Identities=16% Similarity=0.133 Sum_probs=58.7
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCc-chHHHHHHHHhcCCCCceEEe
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNE-SLLDEIKEALANVEEKPEILA 155 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e-~~~~~l~~~l~~~~~~~~v~~ 155 (435)
.+|.|.|++|+||..++.+.+.. ..+|++.+. +-++ .+.++++..+.+.-.++ +...+.
T Consensus 140 ~~VLI~ga~g~vG~~aiqlAk~~--G~~Vi~~~~--s~~~-~~~~~~lGa~~vi~~~~~~~~~~~--------------- 199 (325)
T TIGR02825 140 ETVMVNAAAGAVGSVVGQIAKLK--GCKVVGAAG--SDEK-VAYLKKLGFDVAFNYKTVKSLEET--------------- 199 (325)
T ss_pred CEEEEeCCccHHHHHHHHHHHHc--CCEEEEEeC--CHHH-HHHHHHcCCCEEEeccccccHHHH---------------
Confidence 58999999999999999999886 456776553 3344 34557788776654332 111111
Q ss_pred chhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCcee
Q 013846 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (435)
Q Consensus 156 G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ia 196 (435)
+.++ ....+|+|++++.| ..+...+..++.|-++.
T Consensus 200 ----~~~~-~~~gvdvv~d~~G~-~~~~~~~~~l~~~G~iv 234 (325)
T TIGR02825 200 ----LKKA-SPDGYDCYFDNVGG-EFSNTVIGQMKKFGRIA 234 (325)
T ss_pred ----HHHh-CCCCeEEEEECCCH-HHHHHHHHHhCcCcEEE
Confidence 1111 12358999997655 45566666666654443
No 270
>PRK14982 acyl-ACP reductase; Provisional
Probab=87.57 E-value=1.2 Score=46.19 Aligned_cols=47 Identities=15% Similarity=0.278 Sum_probs=32.5
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f 124 (435)
.|+|.|+|+|||||.....-+.+...-.+|+.+ +++.+.+.+.+.++
T Consensus 155 ~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv--~R~~~rl~~La~el 201 (340)
T PRK14982 155 KATVAVVGATGDIGSAVCRWLDAKTGVAELLLV--ARQQERLQELQAEL 201 (340)
T ss_pred CCEEEEEccChHHHHHHHHHHHhhCCCCEEEEE--cCCHHHHHHHHHHh
Confidence 378999999999999999999743111233332 46677776666655
No 271
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.46 E-value=4.2 Score=42.62 Aligned_cols=117 Identities=20% Similarity=0.200 Sum_probs=65.2
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEEe
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~~ 155 (435)
.|+|.|+|+ |.+|..+.+.+++. .++|+..-.. +.+. ...+.+.+.. .++++..
T Consensus 16 ~~~v~viG~-G~~G~~~A~~L~~~--G~~V~~~d~~-~~~~--------------------~~~~~~~l~~--~gv~~~~ 69 (480)
T PRK01438 16 GLRVVVAGL-GVSGFAAADALLEL--GARVTVVDDG-DDER--------------------HRALAAILEA--LGATVRL 69 (480)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHC--CCEEEEEeCC-chhh--------------------hHHHHHHHHH--cCCEEEE
Confidence 468999997 77999999999876 5677664332 2111 1111122211 2456666
Q ss_pred chhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCceeecccceeeeccccchHHhhhcCCeEeecccchhhHHHhh
Q 013846 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 235 (435)
Q Consensus 156 G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLANKESLV~aG~lv~~~a~~~~~~IiPVDSEHsAIfQ~L 235 (435)
|..-. ...++|+||.+. | +.|... +...|++.| +||+||-...|+++
T Consensus 70 ~~~~~----~~~~~D~Vv~s~-G---i~~~~~----------------------~~~~a~~~g---i~v~~~~e~~~~~~ 116 (480)
T PRK01438 70 GPGPT----LPEDTDLVVTSP-G---WRPDAP----------------------LLAAAADAG---IPVWGEVELAWRLR 116 (480)
T ss_pred CCCcc----ccCCCCEEEECC-C---cCCCCH----------------------HHHHHHHCC---CeecchHHHHHHhh
Confidence 65322 224588888642 3 333211 122334444 56677777667765
Q ss_pred cCCCCCccceEEEEeeCC
Q 013846 236 QGLPEGALRRIILTASGG 253 (435)
Q Consensus 236 ~g~~~~~v~kIiLTASGG 253 (435)
+.. .....|-+|.|-|
T Consensus 117 ~~~--~~~~~I~VTGTnG 132 (480)
T PRK01438 117 DPD--RPAPWLAVTGTNG 132 (480)
T ss_pred hcc--CCCCEEEEeCCCc
Confidence 421 2345688888877
No 272
>PRK07677 short chain dehydrogenase; Provisional
Probab=87.46 E-value=5.8 Score=37.13 Aligned_cols=42 Identities=19% Similarity=0.211 Sum_probs=30.6
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHH
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVK 122 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~ 122 (435)
|++.|.|+||.||......+.+. ..+|+.+. +|.+.+.+...
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~--G~~Vi~~~--r~~~~~~~~~~ 43 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEE--GANVVITG--RTKEKLEEAKL 43 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHH
Confidence 68999999999999999999876 45676653 44444444333
No 273
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=87.39 E-value=3.8 Score=40.25 Aligned_cols=54 Identities=22% Similarity=0.204 Sum_probs=35.7
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccC--CHHHHHHHHHhhCCCEEEE
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGS--NITLLADQVKRFKPQVVAV 131 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~--N~~~L~~q~~~f~P~~v~v 131 (435)
.|++.|.|++|.||.....-+.+. ..+|+...-+. ..+.+.++++....+.+.+
T Consensus 12 ~k~~lVTGas~gIG~~ia~~L~~~--Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~ 67 (306)
T PRK07792 12 GKVAVVTGAAAGLGRAEALGLARL--GATVVVNDVASALDASDVLDEIRAAGAKAVAV 67 (306)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC--CCEEEEecCCchhHHHHHHHHHHhcCCeEEEE
Confidence 368999999999999998888876 45666543222 2445555565555444433
No 274
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=87.32 E-value=5.9 Score=36.06 Aligned_cols=31 Identities=19% Similarity=0.187 Sum_probs=25.6
Q ss_pred EEEEecCChHhHHHHHHHHhCCCceEEEEEecc
Q 013846 79 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG 111 (435)
Q Consensus 79 I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~ 111 (435)
|.|.|+||.||....+.+.+. .++|+.++..
T Consensus 1 vlItG~~g~iG~~la~~l~~~--G~~v~~~~r~ 31 (239)
T TIGR01830 1 ALVTGASRGIGRAIALKLAKE--GAKVIITYRS 31 (239)
T ss_pred CEEECCCcHHHHHHHHHHHHC--CCEEEEEeCC
Confidence 579999999999999998875 5788777643
No 275
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=87.28 E-value=6.5 Score=37.62 Aligned_cols=89 Identities=15% Similarity=0.234 Sum_probs=54.3
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEEe
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~~ 155 (435)
..+|.|.|+||++|..+..+.+.. .++|++++ ++-+. .+.++++..+.+.-. ++ +.+.+
T Consensus 163 ~~~vlI~ga~g~vG~~~~~~a~~~--g~~v~~~~--~~~~~-~~~~~~~~~~~~~~~-~~----~~~~~----------- 221 (332)
T cd08259 163 GDTVLVTGAGGGVGIHAIQLAKAL--GARVIAVT--RSPEK-LKILKELGADYVIDG-SK----FSEDV----------- 221 (332)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHc--CCeEEEEe--CCHHH-HHHHHHcCCcEEEec-HH----HHHHH-----------
Confidence 458999999999999999999987 56777665 33343 334455554433211 11 22211
Q ss_pred chhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCc
Q 013846 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD 194 (435)
Q Consensus 156 G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ 194 (435)
. +...+|+|++.+. ...+...+.++..+-+
T Consensus 222 -----~---~~~~~d~v~~~~g-~~~~~~~~~~~~~~g~ 251 (332)
T cd08259 222 -----K---KLGGADVVIELVG-SPTIEESLRSLNKGGR 251 (332)
T ss_pred -----H---hccCCCEEEECCC-hHHHHHHHHHhhcCCE
Confidence 1 1125899998754 4446667777755433
No 276
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=87.24 E-value=11 Score=35.74 Aligned_cols=117 Identities=21% Similarity=0.143 Sum_probs=70.8
Q ss_pred eeEEEEec-CChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcch------HHHHHHHHhcCCC
Q 013846 77 KPISVLGS-TGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESL------LDEIKEALANVEE 149 (435)
Q Consensus 77 k~I~IlGS-TGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~------~~~l~~~l~~~~~ 149 (435)
+||+||-| +||-....++-+++..-..+|+++..++.-....+.+++.+-.+..+..++. -+++.+.+.....
T Consensus 1 ~riail~sg~gs~~~~ll~~~~~~~l~~~I~~vi~~~~~~~~~~~A~~~gip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (190)
T TIGR00639 1 KRIVVLISGNGSNLQAIIDACKEGKIPASVVLVISNKPDAYGLERAAQAGIPTFVLSLKDFPSREAFDQAIIEELRAHEV 80 (190)
T ss_pred CeEEEEEcCCChhHHHHHHHHHcCCCCceEEEEEECCccchHHHHHHHcCCCEEEECccccCchhhhhHHHHHHHHhcCC
Confidence 47999887 6777777888777766567888876665434556888998887776542211 1234444443344
Q ss_pred CceEEechhHHH--HHhcCCCCCEEEEe----cccccCcHHHHHHHHcCCc
Q 013846 150 KPEILAGEQGVI--EAARHPDAVTVVTG----IVGCAGLKPTVAAIEAGKD 194 (435)
Q Consensus 150 ~~~v~~G~egl~--~l~~~~~~D~Vv~A----IvG~aGL~pt~~Ai~~gK~ 194 (435)
+.-|+.|---+. ++.+... --++|- .--+-|..|...|+.+|.+
T Consensus 81 D~iv~~~~~~il~~~~l~~~~-~~~iNiHpslLP~yrG~~p~~~ai~~g~~ 130 (190)
T TIGR00639 81 DLVVLAGFMRILGPTFLSRFA-GRILNIHPSLLPAFPGLHAVEQALEAGVK 130 (190)
T ss_pred CEEEEeCcchhCCHHHHhhcc-CCEEEEeCCcccCCCCccHHHHHHHcCCC
Confidence 555555542221 1222221 125554 3347888999999999843
No 277
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=87.19 E-value=2.8 Score=40.85 Aligned_cols=33 Identities=21% Similarity=0.313 Sum_probs=27.9
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEec
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa 110 (435)
.|+|.|.|+||+||....+-+.+. .++|++++-
T Consensus 5 ~~~vlVTGatG~iG~~l~~~L~~~--g~~V~~~~r 37 (322)
T PLN02986 5 GKLVCVTGASGYIASWIVKLLLLR--GYTVKATVR 37 (322)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEEC
Confidence 368999999999999999988875 578887654
No 278
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=87.16 E-value=7.8 Score=38.31 Aligned_cols=46 Identities=11% Similarity=0.257 Sum_probs=33.8
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f 124 (435)
.|.+.|.|+|+.||.++..-+.+.. .++|+.++ +|.+.+.+.+++.
T Consensus 3 ~k~vlITGas~GIG~aia~~L~~~G-~~~V~l~~--r~~~~~~~~~~~l 48 (314)
T TIGR01289 3 KPTVIITGASSGLGLYAAKALAATG-EWHVIMAC--RDFLKAEQAAKSL 48 (314)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcC-CCEEEEEe--CCHHHHHHHHHHh
Confidence 4689999999999999999888763 16676653 5666666555554
No 279
>PLN02206 UDP-glucuronate decarboxylase
Probab=87.09 E-value=0.73 Score=48.57 Aligned_cols=31 Identities=19% Similarity=0.343 Sum_probs=27.3
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLa 109 (435)
+||.|.|+||+||.+.++-+.+. .++|+++.
T Consensus 120 ~kILVTGatGfIGs~Lv~~Ll~~--G~~V~~ld 150 (442)
T PLN02206 120 LRVVVTGGAGFVGSHLVDRLMAR--GDSVIVVD 150 (442)
T ss_pred CEEEEECcccHHHHHHHHHHHHC--cCEEEEEe
Confidence 57999999999999999988876 67888874
No 280
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=87.03 E-value=6.2 Score=39.05 Aligned_cols=96 Identities=15% Similarity=0.139 Sum_probs=58.2
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCce-EEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEE
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKF-RVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f-~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~ 154 (435)
.++|.|.| +|.+|..++.+.+.. .. +|++++ ++-+.+ ++++++..+.+.-.++.....+.
T Consensus 178 g~~vlI~g-~g~vG~~~~~lak~~--G~~~v~~~~--~~~~~~-~~~~~~g~~~vi~~~~~~~~~~~------------- 238 (361)
T cd08231 178 GDTVVVQG-AGPLGLYAVAAAKLA--GARRVIVID--GSPERL-ELAREFGADATIDIDELPDPQRR------------- 238 (361)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHc--CCCeEEEEc--CCHHHH-HHHHHcCCCeEEcCcccccHHHH-------------
Confidence 45799998 599999999999986 35 566654 333333 45567776555432221111111
Q ss_pred echhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCC
Q 013846 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGK 193 (435)
Q Consensus 155 ~G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK 193 (435)
+.+.++.....+|+|++.+.|...+...+..++.+-
T Consensus 239 ---~~i~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G 274 (361)
T cd08231 239 ---AIVRDITGGRGADVVIEASGHPAAVPEGLELLRRGG 274 (361)
T ss_pred ---HHHHHHhCCCCCcEEEECCCChHHHHHHHHHhccCC
Confidence 123334333468999998765556777777776543
No 281
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=87.03 E-value=3.5 Score=41.02 Aligned_cols=91 Identities=16% Similarity=0.123 Sum_probs=55.9
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccC-CHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEE
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGS-NITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~-N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~ 154 (435)
.++|+|.|+ |.||..+..+++.. ..+|++..... +-+++ +.++++..+++...++ . +.
T Consensus 173 g~~vlI~G~-G~vG~~a~q~ak~~--G~~vi~~~~~~~~~~~~-~~~~~~Ga~~v~~~~~-~---~~------------- 231 (355)
T cd08230 173 PRRALVLGA-GPIGLLAALLLRLR--GFEVYVLNRRDPPDPKA-DIVEELGATYVNSSKT-P---VA------------- 231 (355)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHc--CCeEEEEecCCCCHHHH-HHHHHcCCEEecCCcc-c---hh-------------
Confidence 358999996 99999999999887 45788765421 33443 4677888776421111 1 00
Q ss_pred echhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCc
Q 013846 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD 194 (435)
Q Consensus 155 ~G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ 194 (435)
+ .. ....+|+|+++..+-..+.-.+.+++.|-+
T Consensus 232 ---~-~~---~~~~~d~vid~~g~~~~~~~~~~~l~~~G~ 264 (355)
T cd08230 232 ---E-VK---LVGEFDLIIEATGVPPLAFEALPALAPNGV 264 (355)
T ss_pred ---h-hh---hcCCCCEEEECcCCHHHHHHHHHHccCCcE
Confidence 0 00 123689999987554455555666665543
No 282
>PRK06484 short chain dehydrogenase; Validated
Probab=87.00 E-value=5.2 Score=41.85 Aligned_cols=63 Identities=22% Similarity=0.286 Sum_probs=43.5
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEE-cCcchHHHHHH
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAV-RNESLLDEIKE 142 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v-~~e~~~~~l~~ 142 (435)
.|.+.|.|+|+-||..+.+-+.+. .++|+.+ .++.+.+.+..++...+...+ .|-...+.+++
T Consensus 5 ~k~~lITGas~gIG~aia~~l~~~--G~~V~~~--~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 68 (520)
T PRK06484 5 SRVVLVTGAAGGIGRAACQRFARA--GDQVVVA--DRNVERARERADSLGPDHHALAMDVSDEAQIRE 68 (520)
T ss_pred CeEEEEECCCcHHHHHHHHHHHHC--CCEEEEE--eCCHHHHHHHHHHhCCceeEEEeccCCHHHHHH
Confidence 378999999999999999999886 4667654 356788887777775554333 33333333433
No 283
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=86.95 E-value=6.6 Score=38.76 Aligned_cols=96 Identities=15% Similarity=0.116 Sum_probs=59.7
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEEe
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~~ 155 (435)
.++|.|+|+ |.+|..++.+.+.. ..+++..+ .++-+++. .++++..+.+.-.++...+++.+
T Consensus 161 g~~vlV~G~-g~vG~~~~~~a~~~--G~~~v~~~-~~~~~~~~-~~~~~Ga~~~i~~~~~~~~~~~~------------- 222 (347)
T PRK10309 161 GKNVIIIGA-GTIGLLAIQCAVAL--GAKSVTAI-DINSEKLA-LAKSLGAMQTFNSREMSAPQIQS------------- 222 (347)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHc--CCCeEEEE-CCCHHHHH-HHHHcCCceEecCcccCHHHHHH-------------
Confidence 368999985 99999999999987 45433222 34555554 45778776554322211222222
Q ss_pred chhHHHHHhcCCCCC-EEEEecccccCcHHHHHHHHcCCcee
Q 013846 156 GEQGVIEAARHPDAV-TVVTGIVGCAGLKPTVAAIEAGKDIA 196 (435)
Q Consensus 156 G~egl~~l~~~~~~D-~Vv~AIvG~aGL~pt~~Ai~~gK~ia 196 (435)
+.....+| +|++++.+-..+.-.+.+++.|-++.
T Consensus 223 -------~~~~~~~d~~v~d~~G~~~~~~~~~~~l~~~G~iv 257 (347)
T PRK10309 223 -------VLRELRFDQLILETAGVPQTVELAIEIAGPRAQLA 257 (347)
T ss_pred -------HhcCCCCCeEEEECCCCHHHHHHHHHHhhcCCEEE
Confidence 22223467 88898776667777888888876654
No 284
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=86.90 E-value=0.84 Score=48.01 Aligned_cols=31 Identities=23% Similarity=0.364 Sum_probs=27.2
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLa 109 (435)
+||.|.|+||+||.+.++-+.+. .++|+++.
T Consensus 121 mkILVTGatGFIGs~Lv~~Ll~~--G~~V~~ld 151 (436)
T PLN02166 121 LRIVVTGGAGFVGSHLVDKLIGR--GDEVIVID 151 (436)
T ss_pred CEEEEECCccHHHHHHHHHHHHC--CCEEEEEe
Confidence 47999999999999999988775 67899885
No 285
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=86.69 E-value=6 Score=37.59 Aligned_cols=44 Identities=20% Similarity=0.190 Sum_probs=31.5
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHh
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR 123 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~ 123 (435)
.|++.|.|+||.||.....-+.+. .++|+.+. +|.+.+.+..++
T Consensus 10 ~k~vlVtGas~giG~~ia~~l~~~--G~~V~~~~--r~~~~~~~~~~~ 53 (278)
T PRK08277 10 GKVAVITGGGGVLGGAMAKELARA--GAKVAILD--RNQEKAEAVVAE 53 (278)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHHH
Confidence 378999999999999999998876 45666543 445544444443
No 286
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=86.51 E-value=4.3 Score=42.00 Aligned_cols=51 Identities=24% Similarity=0.260 Sum_probs=40.4
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEE
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVV 129 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v 129 (435)
|++.|.|+||.||..+.+.+.++ ..+|+.+....+.+.+.+.+.+.+-..+
T Consensus 211 ~~vlItGasggIG~~la~~l~~~--Ga~vi~~~~~~~~~~l~~~~~~~~~~~~ 261 (450)
T PRK08261 211 KVALVTGAARGIGAAIAEVLARD--GAHVVCLDVPAAGEALAAVANRVGGTAL 261 (450)
T ss_pred CEEEEecCCCHHHHHHHHHHHHC--CCEEEEEeCCccHHHHHHHHHHcCCeEE
Confidence 68999999999999999998876 5788887766677777777776654433
No 287
>PLN02650 dihydroflavonol-4-reductase
Probab=86.50 E-value=0.85 Score=45.24 Aligned_cols=33 Identities=24% Similarity=0.346 Sum_probs=28.0
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEec
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa 110 (435)
.|+|.|.|+||+||....+-+.+. .++|+++.-
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~~--G~~V~~~~r 37 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLER--GYTVRATVR 37 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHC--CCEEEEEEc
Confidence 358999999999999999998875 678888753
No 288
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=86.46 E-value=0.8 Score=46.86 Aligned_cols=36 Identities=28% Similarity=0.536 Sum_probs=28.7
Q ss_pred eEEEEecCChHhHHHHHHHHh--CCCceEEEEEeccCCH
Q 013846 78 PISVLGSTGSIGTQTLDIVAE--HEDKFRVVALAAGSNI 114 (435)
Q Consensus 78 ~I~IlGSTGSIG~qtLdVi~~--~pd~f~VvaLaa~~N~ 114 (435)
+|+|+|+||.+|...++.+.+ || .++++.++..++.
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp-~~~l~~~as~~~~ 38 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFP-IDKLVLLASDRSA 38 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCC-hhhEEEEeccccC
Confidence 589999999999999999988 65 3667666555443
No 289
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=86.46 E-value=5.9 Score=37.71 Aligned_cols=48 Identities=27% Similarity=0.285 Sum_probs=33.4
Q ss_pred CeeEEEEec--CChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhC
Q 013846 76 PKPISVLGS--TGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFK 125 (435)
Q Consensus 76 ~k~I~IlGS--TGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~ 125 (435)
.|.++|.|+ ++-||..+-.-+.+. ..+|+...-++|.+.+.+.+.++.
T Consensus 7 ~k~~lItGa~~s~GIG~a~a~~la~~--G~~v~l~~r~~~~~~~~~~~~~~~ 56 (256)
T PRK07889 7 GKRILVTGVITDSSIAFHVARVAQEQ--GAEVVLTGFGRALRLTERIAKRLP 56 (256)
T ss_pred CCEEEEeCCCCcchHHHHHHHHHHHC--CCEEEEecCccchhHHHHHHHhcC
Confidence 368999999 899999999888875 466665443344555555555554
No 290
>PRK05855 short chain dehydrogenase; Validated
Probab=86.33 E-value=6.5 Score=40.88 Aligned_cols=44 Identities=23% Similarity=0.163 Sum_probs=32.5
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHh
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR 123 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~ 123 (435)
.+++.|.|+||.||.++.+-+.+. .++|+.++ +|.+.+.+.+.+
T Consensus 315 ~~~~lv~G~s~giG~~~a~~l~~~--G~~v~~~~--r~~~~~~~~~~~ 358 (582)
T PRK05855 315 GKLVVVTGAGSGIGRETALAFARE--GAEVVASD--IDEAAAERTAEL 358 (582)
T ss_pred CCEEEEECCcCHHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHHH
Confidence 368999999999999999998876 56666543 466666554443
No 291
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=86.33 E-value=2.6 Score=39.24 Aligned_cols=33 Identities=27% Similarity=0.307 Sum_probs=27.6
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 013846 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (435)
Q Consensus 75 ~~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLa 109 (435)
..|+|.|.|+||.||.++..-+.+. .++|+++.
T Consensus 11 ~~k~vlItG~~g~iG~~la~~l~~~--G~~Vi~~~ 43 (247)
T PRK08945 11 KDRIILVTGAGDGIGREAALTYARH--GATVILLG 43 (247)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHC--CCcEEEEe
Confidence 3468999999999999999998875 56887664
No 292
>PRK12747 short chain dehydrogenase; Provisional
Probab=86.29 E-value=5.4 Score=37.24 Aligned_cols=44 Identities=20% Similarity=0.140 Sum_probs=31.4
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHH
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVK 122 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~ 122 (435)
.|++.|.|+||.||.++.+-+.+. .++|+.+ ..++.+.+.+.+.
T Consensus 4 ~k~~lItGas~gIG~~ia~~l~~~--G~~v~~~-~~~~~~~~~~~~~ 47 (252)
T PRK12747 4 GKVALVTGASRGIGRAIAKRLAND--GALVAIH-YGNRKEEAEETVY 47 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHC--CCeEEEE-cCCCHHHHHHHHH
Confidence 478999999999999999998875 5666554 3345454444333
No 293
>PRK08703 short chain dehydrogenase; Provisional
Probab=86.28 E-value=1.9 Score=39.95 Aligned_cols=44 Identities=23% Similarity=0.237 Sum_probs=33.0
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHh
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR 123 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~ 123 (435)
.|+|.|+|+||.||....+.+.+. .++|+.++ +|.+.+.+...+
T Consensus 6 ~k~vlItG~sggiG~~la~~l~~~--g~~V~~~~--r~~~~~~~~~~~ 49 (239)
T PRK08703 6 DKTILVTGASQGLGEQVAKAYAAA--GATVILVA--RHQKKLEKVYDA 49 (239)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHc--CCEEEEEe--CChHHHHHHHHH
Confidence 368999999999999999999875 56777654 555655554444
No 294
>PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila. A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A.
Probab=86.05 E-value=1.4 Score=41.92 Aligned_cols=41 Identities=17% Similarity=0.350 Sum_probs=28.6
Q ss_pred EEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHH
Q 013846 81 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQV 121 (435)
Q Consensus 81 IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~ 121 (435)
|-||||++|...|+-+-+.++..+|.+|.=.+|.+...+..
T Consensus 1 lTGaTGflG~~ll~~Ll~~~~~~~I~cLvR~~~~~~~~~rl 41 (249)
T PF07993_consen 1 LTGATGFLGSHLLEELLRQPPDVKIYCLVRASSSQSALERL 41 (249)
T ss_dssp EE-TTSHHHHHHHHHHHHHS-TTEEEEEE-SSSHHHHHHHH
T ss_pred CcCCCcHHHHHHHHHHHcCCCCcEEEEEEeCcccccchhhh
Confidence 57999999999998877776533999998777764444333
No 295
>TIGR02685 pter_reduc_Leis pteridine reductase. Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.
Probab=86.04 E-value=6.3 Score=37.38 Aligned_cols=45 Identities=16% Similarity=0.190 Sum_probs=33.4
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f 124 (435)
+.+.|.|+||.||..+.+-+.+. .++|+.+ ++++.+.+.+..+++
T Consensus 2 ~~~lITGas~gIG~~~a~~l~~~--G~~V~~~-~~~~~~~~~~~~~~l 46 (267)
T TIGR02685 2 PAAVVTGAAKRIGSSIAVALHQE--GYRVVLH-YHRSAAAASTLAAEL 46 (267)
T ss_pred CEEEEeCCCCcHHHHHHHHHHhC--CCeEEEE-cCCcHHHHHHHHHHH
Confidence 46899999999999999998875 5677765 455656665555544
No 296
>PLN00198 anthocyanidin reductase; Provisional
Probab=85.99 E-value=0.99 Score=44.44 Aligned_cols=33 Identities=18% Similarity=0.363 Sum_probs=28.0
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEec
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa 110 (435)
+|+|.|.|+||+||....+-+.+. .++|+++.-
T Consensus 9 ~~~vlItG~~GfIG~~l~~~L~~~--g~~V~~~~r 41 (338)
T PLN00198 9 KKTACVIGGTGFLASLLIKLLLQK--GYAVNTTVR 41 (338)
T ss_pred CCeEEEECCchHHHHHHHHHHHHC--CCEEEEEEC
Confidence 578999999999999999988875 578887753
No 297
>PRK05884 short chain dehydrogenase; Provisional
Probab=85.94 E-value=5.2 Score=37.33 Aligned_cols=60 Identities=15% Similarity=0.218 Sum_probs=40.3
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHH
Q 013846 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKE 142 (435)
Q Consensus 78 ~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~ 142 (435)
|+.|.|+||.||......+.+. .++|+.+ .+|.+.+.+.+++.+...+ ..|-...+.+++
T Consensus 2 ~vlItGas~giG~~ia~~l~~~--g~~v~~~--~r~~~~~~~~~~~~~~~~~-~~D~~~~~~v~~ 61 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRND--GHKVTLV--GARRDDLEVAAKELDVDAI-VCDNTDPASLEE 61 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHC--CCEEEEE--eCCHHHHHHHHHhccCcEE-ecCCCCHHHHHH
Confidence 6999999999999999988765 4667665 3567777776666554333 234333333443
No 298
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=85.90 E-value=5.7 Score=39.63 Aligned_cols=93 Identities=13% Similarity=0.154 Sum_probs=56.7
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceE-EEEEeccCCHHHHHHHHHhhCCCEEEEcCc-chHHHHHHHHhcCCCCceE
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFR-VVALAAGSNITLLADQVKRFKPQVVAVRNE-SLLDEIKEALANVEEKPEI 153 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~-VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e-~~~~~l~~~l~~~~~~~~v 153 (435)
.++|.|.|+ |.||..++.+.+.. ..+ |+++.. +-++ .+.++++..+.+.-..+ +..+.++
T Consensus 177 g~~VlV~G~-g~vG~~a~~~ak~~--G~~~Vi~~~~--~~~~-~~~~~~~Ga~~~i~~~~~~~~~~i~------------ 238 (358)
T TIGR03451 177 GDSVAVIGC-GGVGDAAIAGAALA--GASKIIAVDI--DDRK-LEWAREFGATHTVNSSGTDPVEAIR------------ 238 (358)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHc--CCCeEEEEcC--CHHH-HHHHHHcCCceEEcCCCcCHHHHHH------------
Confidence 468999985 99999999999976 453 665532 3333 34557787766543222 1122222
Q ss_pred EechhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCc
Q 013846 154 LAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD 194 (435)
Q Consensus 154 ~~G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ 194 (435)
++.....+|+|++++.+-..+.-.+.+++.|-+
T Consensus 239 --------~~~~~~g~d~vid~~g~~~~~~~~~~~~~~~G~ 271 (358)
T TIGR03451 239 --------ALTGGFGADVVIDAVGRPETYKQAFYARDLAGT 271 (358)
T ss_pred --------HHhCCCCCCEEEECCCCHHHHHHHHHHhccCCE
Confidence 222223589999987655556666666665544
No 299
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=85.86 E-value=5.8 Score=37.33 Aligned_cols=44 Identities=18% Similarity=0.180 Sum_probs=31.8
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHH
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVK 122 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~ 122 (435)
.|++.|.|++|.||....+.+.+. ..+|+. .++++.+.+.+...
T Consensus 7 ~k~~lItGa~~gIG~~ia~~l~~~--G~~vvi-~~~~~~~~~~~~~~ 50 (261)
T PRK08936 7 GKVVVITGGSTGLGRAMAVRFGKE--KAKVVI-NYRSDEEEANDVAE 50 (261)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHC--CCEEEE-EeCCCHHHHHHHHH
Confidence 478999999999999999988876 456654 45556554444333
No 300
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=85.62 E-value=7.8 Score=37.68 Aligned_cols=99 Identities=9% Similarity=0.074 Sum_probs=58.0
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCH-HHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEE
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNI-TLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~-~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~ 154 (435)
.++|.|.|++|++|..++.+.+.. ..+|++.+..... +.-.+.++++..+.+.-..+.....+.
T Consensus 147 g~~vlI~g~~g~vg~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~------------- 211 (341)
T cd08290 147 GDWVIQNGANSAVGQAVIQLAKLL--GIKTINVVRDRPDLEELKERLKALGADHVLTEEELRSLLAT------------- 211 (341)
T ss_pred CCEEEEccchhHHHHHHHHHHHHc--CCeEEEEEcCCCcchhHHHHHHhcCCCEEEeCcccccccHH-------------
Confidence 468999999999999999999987 5778777653221 122344466776665533221000011
Q ss_pred echhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCc
Q 013846 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD 194 (435)
Q Consensus 155 ~G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ 194 (435)
+.+..+... .+|.|++...| ..+...+..++.+-+
T Consensus 212 ---~~i~~~~~~-~~d~vld~~g~-~~~~~~~~~l~~~G~ 246 (341)
T cd08290 212 ---ELLKSAPGG-RPKLALNCVGG-KSATELARLLSPGGT 246 (341)
T ss_pred ---HHHHHHcCC-CceEEEECcCc-HhHHHHHHHhCCCCE
Confidence 111222222 58999987655 445556666655433
No 301
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=85.62 E-value=0.71 Score=48.31 Aligned_cols=25 Identities=24% Similarity=0.506 Sum_probs=22.0
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCC
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHED 101 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd 101 (435)
|+|+|+|+||-+|+..++++..+++
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~ 25 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERD 25 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCC
Confidence 4799999999999999999995544
No 302
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=85.57 E-value=7.1 Score=40.97 Aligned_cols=153 Identities=13% Similarity=0.168 Sum_probs=98.1
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCC-ceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceE
Q 013846 75 GPKPISVLGSTGSIGTQTLDIVAEHED-KFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEI 153 (435)
Q Consensus 75 ~~k~I~IlGSTGSIG~qtLdVi~~~pd-~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v 153 (435)
..-|++|+|+ |.|+.-.+..+-.-|+ +++|+|+++. ..+...+-|+.++-. ++++
T Consensus 5 ~~ir~Gi~g~-g~ia~~f~~al~~~p~s~~~Ivava~~-s~~~A~~fAq~~~~~----------------------~~k~ 60 (351)
T KOG2741|consen 5 ATIRWGIVGA-GRIARDFVRALHTLPESNHQIVAVADP-SLERAKEFAQRHNIP----------------------NPKA 60 (351)
T ss_pred ceeEEEEeeh-hHHHHHHHHHhccCcccCcEEEEEecc-cHHHHHHHHHhcCCC----------------------CCcc
Confidence 4568999987 3555555555554553 7999999988 456555555555411 2445
Q ss_pred EechhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCceeecccceeeec--cccchHHhhhcCCeEe-ecccchhh
Q 013846 154 LAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAG--GPFVLPLAHKHNIKIL-PADSEHSA 230 (435)
Q Consensus 154 ~~G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLANKESLV~a--G~lv~~~a~~~~~~Ii-PVDSEHsA 230 (435)
+. +.+++++++++|+|+.++-=..--+-..-++..||-|.+ -|=.-... -.-|.++|++.|.++. =.=+-|+=
T Consensus 61 y~---syEeLakd~~vDvVyi~~~~~qH~evv~l~l~~~K~VL~-EKPla~n~~e~~~iveaA~~rgv~~meg~~~R~~P 136 (351)
T KOG2741|consen 61 YG---SYEELAKDPEVDVVYISTPNPQHYEVVMLALNKGKHVLC-EKPLAMNVAEAEEIVEAAEARGVFFMEGLWWRFFP 136 (351)
T ss_pred cc---CHHHHhcCCCcCEEEeCCCCccHHHHHHHHHHcCCcEEe-cccccCCHHHHHHHHHHHHHcCcEEEeeeeeecCc
Confidence 54 456778999999999988877777778889999998543 12111111 1124466777776543 34445554
Q ss_pred HHHhhc----CCCCCccceEEEEeeCCCCC
Q 013846 231 IFQCIQ----GLPEGALRRIILTASGGAFR 256 (435)
Q Consensus 231 IfQ~L~----g~~~~~v~kIiLTASGGPFr 256 (435)
.++-|+ +..-.+|+.+.+ .=|+||+
T Consensus 137 ~~~~lke~l~~~~~Gdvk~v~~-~~~f~~~ 165 (351)
T KOG2741|consen 137 RYAKLKELLSSGVLGDVKSVEV-EFGFPFP 165 (351)
T ss_pred HHHHHHHHHhccccccceEEEE-ecCCCcc
Confidence 444443 456678999999 6778886
No 303
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=85.56 E-value=9.5 Score=36.45 Aligned_cols=93 Identities=18% Similarity=0.231 Sum_probs=57.3
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCc-chHHHHHHHHhcCCCCceEE
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNE-SLLDEIKEALANVEEKPEIL 154 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e-~~~~~l~~~l~~~~~~~~v~ 154 (435)
..+|.|.|++|.+|..++.+.+.+ ..+|++++. +-+. .+.++++..+.+.-..+ +..+.
T Consensus 143 ~~~vlI~g~~~~~g~~~~~la~~~--g~~v~~~~~--~~~~-~~~~~~~g~~~~~~~~~~~~~~~--------------- 202 (324)
T cd08244 143 GDVVLVTAAAGGLGSLLVQLAKAA--GATVVGAAG--GPAK-TALVRALGADVAVDYTRPDWPDQ--------------- 202 (324)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHC--CCEEEEEeC--CHHH-HHHHHHcCCCEEEecCCccHHHH---------------
Confidence 458999999999999999999987 466777643 3333 34456666655432211 11112
Q ss_pred echhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCc
Q 013846 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD 194 (435)
Q Consensus 155 ~G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ 194 (435)
+.++.....+|+|++.+.|-. ....+.++..+-+
T Consensus 203 -----~~~~~~~~~~d~vl~~~g~~~-~~~~~~~l~~~g~ 236 (324)
T cd08244 203 -----VREALGGGGVTVVLDGVGGAI-GRAALALLAPGGR 236 (324)
T ss_pred -----HHHHcCCCCceEEEECCChHh-HHHHHHHhccCcE
Confidence 222222235899999876654 4666777755433
No 304
>PRK06953 short chain dehydrogenase; Provisional
Probab=85.54 E-value=5.6 Score=36.56 Aligned_cols=39 Identities=26% Similarity=0.410 Sum_probs=30.5
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHH
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLA 118 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~ 118 (435)
||++.|.|+||.||..+.+-+.+. .++|+.+. +|.+.+.
T Consensus 1 ~~~vlvtG~sg~iG~~la~~L~~~--G~~v~~~~--r~~~~~~ 39 (222)
T PRK06953 1 MKTVLIVGASRGIGREFVRQYRAD--GWRVIATA--RDAAALA 39 (222)
T ss_pred CceEEEEcCCCchhHHHHHHHHhC--CCEEEEEE--CCHHHHH
Confidence 578999999999999999988765 57777653 4555543
No 305
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=85.35 E-value=1.3 Score=43.29 Aligned_cols=33 Identities=21% Similarity=0.371 Sum_probs=27.7
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 013846 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (435)
Q Consensus 75 ~~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLa 109 (435)
..|+|.|.|+||+||.+..+-+.+. .++|++++
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L~~~--G~~V~~~~ 36 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLLLFR--GYTINATV 36 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHC--CCEEEEEE
Confidence 4578999999999999999988775 57787765
No 306
>PRK06484 short chain dehydrogenase; Validated
Probab=85.24 E-value=7.4 Score=40.73 Aligned_cols=64 Identities=13% Similarity=0.202 Sum_probs=44.2
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEE-cCcchHHHHHH
Q 013846 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAV-RNESLLDEIKE 142 (435)
Q Consensus 75 ~~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v-~~e~~~~~l~~ 142 (435)
..|.+.|.|+||-||..+.+-+.+. .++|+.+ .+|.+.+.+...+...+...+ .|-...+.++.
T Consensus 268 ~~k~~lItGas~gIG~~~a~~l~~~--G~~V~~~--~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 332 (520)
T PRK06484 268 SPRVVAITGGARGIGRAVADRFAAA--GDRLLII--DRDAEGAKKLAEALGDEHLSVQADITDEAAVES 332 (520)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEE--eCCHHHHHHHHHHhCCceeEEEccCCCHHHHHH
Confidence 3578999999999999999888876 4677765 366777777777666554433 34333344443
No 307
>PLN02780 ketoreductase/ oxidoreductase
Probab=85.16 E-value=3.3 Score=41.44 Aligned_cols=44 Identities=23% Similarity=0.175 Sum_probs=33.4
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f 124 (435)
+.+.|.|+||-||.+...-+.+. .++|+.+ .+|.+.|.+.+++.
T Consensus 54 ~~~lITGAs~GIG~alA~~La~~--G~~Vil~--~R~~~~l~~~~~~l 97 (320)
T PLN02780 54 SWALVTGPTDGIGKGFAFQLARK--GLNLVLV--ARNPDKLKDVSDSI 97 (320)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC--CCCEEEE--ECCHHHHHHHHHHH
Confidence 68999999999999999988876 5667654 35777776655543
No 308
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=85.15 E-value=7.7 Score=37.16 Aligned_cols=96 Identities=13% Similarity=0.102 Sum_probs=56.1
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEEe
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~~ 155 (435)
..+|.|.|++|+||..++.+.+.. ..+|+..+.. -+. .+.++++..+.+.-.++.. +.
T Consensus 140 g~~vlI~g~~g~ig~~~~~~a~~~--G~~v~~~~~~--~~~-~~~~~~~g~~~~~~~~~~~---~~-------------- 197 (324)
T cd08292 140 GQWLIQNAAGGAVGKLVAMLAAAR--GINVINLVRR--DAG-VAELRALGIGPVVSTEQPG---WQ-------------- 197 (324)
T ss_pred CCEEEEcccccHHHHHHHHHHHHC--CCeEEEEecC--HHH-HHHHHhcCCCEEEcCCCch---HH--------------
Confidence 358999999999999999999987 4566665432 222 2333445544443222111 11
Q ss_pred chhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCcee
Q 013846 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (435)
Q Consensus 156 G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ia 196 (435)
+.+.++.....+|+|++.+.| ..+...+..++.+-++.
T Consensus 198 --~~i~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~g~~v 235 (324)
T cd08292 198 --DKVREAAGGAPISVALDSVGG-KLAGELLSLLGEGGTLV 235 (324)
T ss_pred --HHHHHHhCCCCCcEEEECCCC-hhHHHHHHhhcCCcEEE
Confidence 112223333458999987655 45666666666554433
No 309
>PRK07069 short chain dehydrogenase; Validated
Probab=85.01 E-value=7.4 Score=35.90 Aligned_cols=44 Identities=16% Similarity=0.195 Sum_probs=31.0
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh
Q 013846 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (435)
Q Consensus 78 ~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f 124 (435)
+|.|.|+||.||....+-+.+. .++|+.+.- +..+.+.+...++
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~--G~~v~~~~r-~~~~~~~~~~~~~ 44 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQ--GAKVFLTDI-NDAAGLDAFAAEI 44 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHC--CCEEEEEeC-CcchHHHHHHHHH
Confidence 4899999999999999999876 577876653 2234444444333
No 310
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=84.95 E-value=9.2 Score=42.59 Aligned_cols=157 Identities=17% Similarity=0.192 Sum_probs=101.0
Q ss_pred CCCCCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEec---------------cCCHHHHHHHHHhhCCCEEEEcCcch
Q 013846 72 TWDGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA---------------GSNITLLADQVKRFKPQVVAVRNESL 136 (435)
Q Consensus 72 ~~~~~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa---------------~~N~~~L~~q~~~f~P~~v~v~~e~~ 136 (435)
+.+..+++.|+|| |+.|.+-++-.+++|+ |.+||..- ..-.+ +.+++++...+.+.++-++.
T Consensus 112 ~~~~~~r~lIiGA-G~ag~~l~r~~~~~~~-~~pV~fiDdd~~~~g~~i~Gv~V~g~~~-i~~~v~~~~~~~iiiAips~ 188 (588)
T COG1086 112 QKDNRIRLLIIGA-GSAGDLLLRALRRDPE-YTPVAFLDDDPDLTGMKIRGVPVLGRIE-IERVVEELGIQLILIAIPSA 188 (588)
T ss_pred cccCCCceEEEcC-chHHHHHHHHHHhCCC-cceEEEECCChhhcCCEEeceeeechhH-HHHHHHHcCCceEEEecCCC
Confidence 3355679999998 5779999999999998 88887532 33456 88999999999888765433
Q ss_pred ----HHHHHHHHhcCCCCceEEechhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCceeecccceeeecc-----
Q 013846 137 ----LDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG----- 207 (435)
Q Consensus 137 ----~~~l~~~l~~~~~~~~v~~G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLANKESLV~aG----- 207 (435)
..++-+.+...+..++++..-+.+.+.... ==|+-+.=+=|=.-..|-.+.+.+ .+-||-.||+||
T Consensus 189 ~~~~~~~i~~~l~~~~~~v~~lP~~~~l~~~~~~-lreI~ieDLLgR~pV~~d~~~i~~----~~~gK~vLVTGagGSiG 263 (588)
T COG1086 189 SQEERRRILLRLARTGIAVRILPQLTDLKDLNGQ-LREIEIEDLLGRPPVALDTELIGA----MLTGKTVLVTGGGGSIG 263 (588)
T ss_pred CHHHHHHHHHHHHhcCCcEEecCcHHHHHHhccc-cccCCHHHHhCCCCCCCCHHHHHh----HcCCCEEEEeCCCCcHH
Confidence 233334444455566777666665542211 112222222233333333333333 356778899876
Q ss_pred -ccchHHhhhcCCeEeecccchhhHHHhhc
Q 013846 208 -PFVLPLAHKHNIKILPADSEHSAIFQCIQ 236 (435)
Q Consensus 208 -~lv~~~a~~~~~~IiPVDSEHsAIfQ~L~ 236 (435)
.+..+.++..-.+|+=.|.--.++||.-+
T Consensus 264 sel~~qil~~~p~~i~l~~~~E~~~~~i~~ 293 (588)
T COG1086 264 SELCRQILKFNPKEIILFSRDEYKLYLIDM 293 (588)
T ss_pred HHHHHHHHhcCCCEEEEecCchHHHHHHHH
Confidence 35566666666789999988888888754
No 311
>PRK07577 short chain dehydrogenase; Provisional
Probab=84.93 E-value=6.3 Score=36.05 Aligned_cols=31 Identities=26% Similarity=0.328 Sum_probs=26.6
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLa 109 (435)
|+|.|.|+||.||.+...-+.+. .++|+++.
T Consensus 4 k~vlItG~s~~iG~~ia~~l~~~--G~~v~~~~ 34 (234)
T PRK07577 4 RTVLVTGATKGIGLALSLRLANL--GHQVIGIA 34 (234)
T ss_pred CEEEEECCCCcHHHHHHHHHHHC--CCEEEEEe
Confidence 68999999999999999998876 46777765
No 312
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=84.89 E-value=1.3 Score=42.07 Aligned_cols=34 Identities=24% Similarity=0.291 Sum_probs=28.8
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCC
Q 013846 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSN 113 (435)
Q Consensus 78 ~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N 113 (435)
+|.|.|+||+||....+-+.+. .++|+++.-..+
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~--g~~V~~~~r~~~ 35 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAA--GHDVRGLDRLRD 35 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhC--CCeEEEEeCCCc
Confidence 4999999999999999988876 789999875443
No 313
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=84.63 E-value=5.7 Score=39.20 Aligned_cols=30 Identities=27% Similarity=0.443 Sum_probs=23.6
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEE
Q 013846 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVAL 108 (435)
Q Consensus 78 ~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaL 108 (435)
||.|.|+||+||.+..+-+.+.... .|+++
T Consensus 2 kilITGgtG~iG~~l~~~L~~~g~~-~v~~~ 31 (352)
T PRK10084 2 KILVTGGAGFIGSAVVRHIINNTQD-SVVNV 31 (352)
T ss_pred eEEEECCCcHHhHHHHHHHHHhCCC-eEEEe
Confidence 6999999999999999999875432 34444
No 314
>COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=84.42 E-value=3.9 Score=43.26 Aligned_cols=87 Identities=23% Similarity=0.307 Sum_probs=51.4
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCH-HHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEEe
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNI-TLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~-~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~~ 155 (435)
++|.+-|+||++|.--+.=.-..++ .+|++|.=.+|- .-+....+.|. .+..+++... ..++++.
T Consensus 1 ~~vlLTGATGFLG~yLl~eLL~~~~-~kv~cLVRA~s~E~a~~RL~~~~~----------~~~~~~e~~~---~ri~vv~ 66 (382)
T COG3320 1 RNVLLTGATGFLGAYLLLELLDRSD-AKVICLVRAQSDEAALARLEKTFD----------LYRHWDELSA---DRVEVVA 66 (382)
T ss_pred CeEEEecCchHhHHHHHHHHHhcCC-CcEEEEEecCCHHHHHHHHHHHhh----------hhhhhhhhhc---ceEEEEe
Confidence 4689999999999766555444455 999999877772 22333334443 1223333221 2466676
Q ss_pred chhH----------HHHHhcCCCCCEEEEecccc
Q 013846 156 GEQG----------VIEAARHPDAVTVVTGIVGC 179 (435)
Q Consensus 156 G~eg----------l~~l~~~~~~D~Vv~AIvG~ 179 (435)
|+-+ -.++++ .+|+|+-.-+=.
T Consensus 67 gDl~e~~lGL~~~~~~~La~--~vD~I~H~gA~V 98 (382)
T COG3320 67 GDLAEPDLGLSERTWQELAE--NVDLIIHNAALV 98 (382)
T ss_pred cccccccCCCCHHHHHHHhh--hcceEEecchhh
Confidence 7644 334443 488888654433
No 315
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=84.41 E-value=7.4 Score=37.56 Aligned_cols=89 Identities=18% Similarity=0.257 Sum_probs=58.6
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEEe
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~~ 155 (435)
-.+|.|+|++|++|..++.+.+... .+|++++ + .+.+++|..+.+.-. .. .
T Consensus 163 g~~vlI~g~~g~vg~~~~~~a~~~G--~~v~~~~--~-----~~~~~~~g~~~~~~~--~~---~--------------- 213 (325)
T cd08264 163 GETVVVFGASGNTGIFAVQLAKMMG--AEVIAVS--R-----KDWLKEFGADEVVDY--DE---V--------------- 213 (325)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcC--CeEEEEe--H-----HHHHHHhCCCeeecc--hH---H---------------
Confidence 3689999999999999999999873 5677765 1 144556765544311 11 1
Q ss_pred chhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCceee
Q 013846 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIAL 197 (435)
Q Consensus 156 G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaL 197 (435)
.+.+.++. ..+|+|++++.+ ..+...+.+++.+-++..
T Consensus 214 -~~~l~~~~--~~~d~vl~~~g~-~~~~~~~~~l~~~g~~v~ 251 (325)
T cd08264 214 -EEKVKEIT--KMADVVINSLGS-SFWDLSLSVLGRGGRLVT 251 (325)
T ss_pred -HHHHHHHh--CCCCEEEECCCH-HHHHHHHHhhccCCEEEE
Confidence 12223333 468999998655 677888888877666543
No 316
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=84.26 E-value=10 Score=35.73 Aligned_cols=94 Identities=14% Similarity=0.158 Sum_probs=56.2
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEEe
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~~ 155 (435)
.++|.|.|++|.+|..++.+.+.. ..+|+.++.. -+.+. ..+++..+.+.-.+... +
T Consensus 145 ~~~vli~g~~~~~g~~~~~~~~~~--g~~v~~~~~~--~~~~~-~~~~~g~~~~~~~~~~~---~--------------- 201 (328)
T cd08268 145 GDSVLITAASSSVGLAAIQIANAA--GATVIATTRT--SEKRD-ALLALGAAHVIVTDEED---L--------------- 201 (328)
T ss_pred CCEEEEecCccHHHHHHHHHHHHc--CCEEEEEcCC--HHHHH-HHHHcCCCEEEecCCcc---H---------------
Confidence 368999999999999999999877 4566665432 34433 33555544433222111 1
Q ss_pred chhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCc
Q 013846 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD 194 (435)
Q Consensus 156 G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ 194 (435)
.+.+.+......+|++++...| .++...+.++..+-+
T Consensus 202 -~~~~~~~~~~~~~d~vi~~~~~-~~~~~~~~~l~~~g~ 238 (328)
T cd08268 202 -VAEVLRITGGKGVDVVFDPVGG-PQFAKLADALAPGGT 238 (328)
T ss_pred -HHHHHHHhCCCCceEEEECCch-HhHHHHHHhhccCCE
Confidence 1122233333358999998766 666666666655443
No 317
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=84.13 E-value=10 Score=40.28 Aligned_cols=112 Identities=15% Similarity=0.214 Sum_probs=63.8
Q ss_pred eeEEEEecCChHhHHHHHHHHhCC-CceEEEEEeccCCHHHHHHHHH------hhCCCEEEEcCcchHHHHHHHHhcCCC
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHE-DKFRVVALAAGSNITLLADQVK------RFKPQVVAVRNESLLDEIKEALANVEE 149 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~p-d~f~VvaLaa~~N~~~L~~q~~------~f~P~~v~v~~e~~~~~l~~~l~~~~~ 149 (435)
.||+|.|. |=||+..|+++.+.+ ..++|+++---...+.++-..+ .|+.+. ...++.. +.-.+.
T Consensus 61 ~kVaInGf-GrIGR~vlr~l~~~~~~~~evvaINd~~~~~~~ayLl~yDS~hG~f~~~v-~~~~g~~-------l~v~gk 131 (395)
T PLN03096 61 IKVAINGF-GRIGRNFLRCWHGRKDSPLDVVAINDTGGVKQASHLLKYDSTLGTFDADV-KPVGDDA-------ISVDGK 131 (395)
T ss_pred cEEEEECc-CHHHHHHHHHHHhCCCCCeEEEEEcCCCCHHHHHHHHhhcccCCCcCCcE-EEecCCE-------EEECCE
Confidence 58999999 999999999987654 4689999865455555544333 122211 1111110 000112
Q ss_pred CceEEechhHHHHHh-cCCCCCEEEEecccccCcHHHHHHHHcC-Cceeec
Q 013846 150 KPEILAGEQGVIEAA-RHPDAVTVVTGIVGCAGLKPTVAAIEAG-KDIALA 198 (435)
Q Consensus 150 ~~~v~~G~egl~~l~-~~~~~D~Vv~AIvG~aGL~pt~~Ai~~g-K~iaLA 198 (435)
.++++. +....++- ...++|+|+.+--.+.--.-.-.++++| |+|-+.
T Consensus 132 ~I~v~~-~~dp~~~~w~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkV~iS 181 (395)
T PLN03096 132 VIKVVS-DRNPLNLPWGELGIDLVIEGTGVFVDREGAGKHIQAGAKKVLIT 181 (395)
T ss_pred EEEEEE-cCCcccccccccCCCEEEECcchhhhHHHHHHHHHCCCEEEEeC
Confidence 233432 22233321 2247999998866665555556788888 555444
No 318
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=84.07 E-value=10 Score=37.94 Aligned_cols=93 Identities=11% Similarity=0.161 Sum_probs=57.4
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCce-EEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEE
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKF-RVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f-~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~ 154 (435)
..+|.|.|+ |+||..++.+.+.. .. +|++++.. -++ .+.++++..+.+.-..+. -+.+.+
T Consensus 188 g~~VlV~G~-g~vG~~a~q~ak~~--G~~~vi~~~~~--~~~-~~~~~~~Ga~~~i~~~~~-~~~~~~------------ 248 (369)
T cd08301 188 GSTVAIFGL-GAVGLAVAEGARIR--GASRIIGVDLN--PSK-FEQAKKFGVTEFVNPKDH-DKPVQE------------ 248 (369)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHc--CCCeEEEEcCC--HHH-HHHHHHcCCceEEccccc-chhHHH------------
Confidence 368999985 99999999999986 45 56665432 233 345677876554422210 011111
Q ss_pred echhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcC
Q 013846 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAG 192 (435)
Q Consensus 155 ~G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~g 192 (435)
.+.++... .+|+|++++.+-..+...+.+++.|
T Consensus 249 ----~v~~~~~~-~~d~vid~~G~~~~~~~~~~~~~~~ 281 (369)
T cd08301 249 ----VIAEMTGG-GVDYSFECTGNIDAMISAFECVHDG 281 (369)
T ss_pred ----HHHHHhCC-CCCEEEECCCChHHHHHHHHHhhcC
Confidence 12223332 5899999976666777777777763
No 319
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=83.97 E-value=14 Score=36.25 Aligned_cols=29 Identities=21% Similarity=0.214 Sum_probs=23.6
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 013846 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (435)
Q Consensus 78 ~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLa 109 (435)
+|+|+| +|.||.+...-+++. .++|.+..
T Consensus 2 ~I~IIG-~G~mG~sla~~L~~~--g~~V~~~d 30 (279)
T PRK07417 2 KIGIVG-LGLIGGSLGLDLRSL--GHTVYGVS 30 (279)
T ss_pred eEEEEe-ecHHHHHHHHHHHHC--CCEEEEEE
Confidence 699999 799999998888876 46776654
No 320
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=83.93 E-value=9.4 Score=35.36 Aligned_cols=33 Identities=21% Similarity=0.250 Sum_probs=27.4
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEec
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa 110 (435)
.|++.|.|+||.||....+-+.+. .++|+++.-
T Consensus 8 ~k~vlItGas~~iG~~la~~l~~~--G~~v~~~~~ 40 (252)
T PRK08220 8 GKTVWVTGAAQGIGYAVALAFVEA--GAKVIGFDQ 40 (252)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCEEEEEec
Confidence 368999999999999999988765 577877753
No 321
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=83.84 E-value=18 Score=34.54 Aligned_cols=95 Identities=11% Similarity=0.157 Sum_probs=59.5
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCc-chHHHHHHHHhcCCCCceE
Q 013846 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNE-SLLDEIKEALANVEEKPEI 153 (435)
Q Consensus 75 ~~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e-~~~~~l~~~l~~~~~~~~v 153 (435)
...+|.|.|++|.||..+..+.+.. ..+|++++.. -+. .++++++..+.+.-..+ .....+
T Consensus 138 ~~~~vlI~g~~~~vg~~~~~~a~~~--g~~v~~~~~~--~~~-~~~~~~~g~~~~~~~~~~~~~~~~------------- 199 (323)
T cd05282 138 PGDWVIQNAANSAVGRMLIQLAKLL--GFKTINVVRR--DEQ-VEELKALGADEVIDSSPEDLAQRV------------- 199 (323)
T ss_pred CCCEEEEcccccHHHHHHHHHHHHC--CCeEEEEecC--hHH-HHHHHhcCCCEEecccchhHHHHH-------------
Confidence 3468999999999999999999987 5677765543 344 34557777665543322 111122
Q ss_pred EechhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCce
Q 013846 154 LAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195 (435)
Q Consensus 154 ~~G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~i 195 (435)
.++.....+|+|++.+.| ..+...+..++.+-++
T Consensus 200 -------~~~~~~~~~d~vl~~~g~-~~~~~~~~~l~~~g~~ 233 (323)
T cd05282 200 -------KEATGGAGARLALDAVGG-ESATRLARSLRPGGTL 233 (323)
T ss_pred -------HHHhcCCCceEEEECCCC-HHHHHHHHhhCCCCEE
Confidence 222222358999987665 4456667777655443
No 322
>PRK07791 short chain dehydrogenase; Provisional
Probab=83.83 E-value=11 Score=36.73 Aligned_cols=32 Identities=28% Similarity=0.293 Sum_probs=25.9
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLa 109 (435)
.|.+.|.|++|.||..+.+-+.+. ..+|+.+.
T Consensus 6 ~k~~lITGas~GIG~aia~~la~~--G~~vii~~ 37 (286)
T PRK07791 6 GRVVIVTGAGGGIGRAHALAFAAE--GARVVVND 37 (286)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC--CCEEEEee
Confidence 368999999999999999988875 45666553
No 323
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=83.80 E-value=9.5 Score=36.12 Aligned_cols=46 Identities=17% Similarity=0.208 Sum_probs=33.4
Q ss_pred CeeEEEEecC--ChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCC
Q 013846 76 PKPISVLGST--GSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKP 126 (435)
Q Consensus 76 ~k~I~IlGST--GSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P 126 (435)
.|.+.|.|++ +.||..+..-+.+. .++|+.. .+| +.+.+++++...
T Consensus 7 ~k~~lItGas~~~gIG~a~a~~la~~--G~~Vi~~--~r~-~~~~~~~~~~~~ 54 (252)
T PRK06079 7 GKKIVVMGVANKRSIAWGCAQAIKDQ--GATVIYT--YQN-DRMKKSLQKLVD 54 (252)
T ss_pred CCEEEEeCCCCCCchHHHHHHHHHHC--CCEEEEe--cCc-hHHHHHHHhhcc
Confidence 4789999999 78999999998875 5777754 345 455566665543
No 324
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=83.75 E-value=1.4 Score=42.37 Aligned_cols=32 Identities=25% Similarity=0.378 Sum_probs=27.3
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEec
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa 110 (435)
++|.|+|+||.||....+-+.+. .++|+++.-
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~--g~~V~~~~r 32 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQ--GEEVRVLVR 32 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHC--CCEEEEEEe
Confidence 36999999999999999998876 478888763
No 325
>PRK08264 short chain dehydrogenase; Validated
Probab=83.65 E-value=9.7 Score=35.03 Aligned_cols=39 Identities=21% Similarity=0.233 Sum_probs=28.6
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCce-EEEEEeccCCHHHHH
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKF-RVVALAAGSNITLLA 118 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f-~VvaLaa~~N~~~L~ 118 (435)
.++|.|.|+||.||.....-+.+. .. +|+.++ ++.+.+.
T Consensus 6 ~~~vlItGgsg~iG~~la~~l~~~--G~~~V~~~~--r~~~~~~ 45 (238)
T PRK08264 6 GKVVLVTGANRGIGRAFVEQLLAR--GAAKVYAAA--RDPESVT 45 (238)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC--CcccEEEEe--cChhhhh
Confidence 368999999999999999988876 34 454443 4555544
No 326
>PRK07201 short chain dehydrogenase; Provisional
Probab=83.52 E-value=9.1 Score=41.23 Aligned_cols=45 Identities=29% Similarity=0.274 Sum_probs=33.7
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f 124 (435)
.|++.|.|+||.||....+-+.+. .++|+.++ +|.+.+.+...+.
T Consensus 371 ~k~vlItGas~giG~~la~~l~~~--G~~V~~~~--r~~~~~~~~~~~~ 415 (657)
T PRK07201 371 GKVVLITGASSGIGRATAIKVAEA--GATVFLVA--RNGEALDELVAEI 415 (657)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEE--CCHHHHHHHHHHH
Confidence 468999999999999999988876 56777764 4566665554443
No 327
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=83.45 E-value=12 Score=36.81 Aligned_cols=90 Identities=18% Similarity=0.230 Sum_probs=58.4
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEEe
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~~ 155 (435)
..+|.|.|++|++|..++.+.+.. .++|++.+.. +++ +.+++|..+.+.-..... +.+
T Consensus 155 ~~~vlI~ga~g~vg~~~~~~a~~~--G~~v~~~~~~---~~~-~~~~~~g~~~v~~~~~~~---~~~------------- 212 (339)
T cd08249 155 GKPVLIWGGSSSVGTLAIQLAKLA--GYKVITTASP---KNF-DLVKSLGADAVFDYHDPD---VVE------------- 212 (339)
T ss_pred CCEEEEEcChhHHHHHHHHHHHHc--CCeEEEEECc---ccH-HHHHhcCCCEEEECCCch---HHH-------------
Confidence 468999999999999999999987 4678877632 333 233667665544322111 111
Q ss_pred chhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHc
Q 013846 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEA 191 (435)
Q Consensus 156 G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~ 191 (435)
.+.++.. ..+|+|++.+.+-..+...+.+++.
T Consensus 213 ---~l~~~~~-~~~d~vl~~~g~~~~~~~~~~~l~~ 244 (339)
T cd08249 213 ---DIRAATG-GKLRYALDCISTPESAQLCAEALGR 244 (339)
T ss_pred ---HHHHhcC-CCeeEEEEeeccchHHHHHHHHHhc
Confidence 1122222 3589999976654778888888886
No 328
>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional
Probab=83.29 E-value=8.2 Score=41.15 Aligned_cols=59 Identities=20% Similarity=0.216 Sum_probs=48.5
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCC-ceEEEEEec-----------cCCHHHHHHHHHhhCCCEEEEcCc
Q 013846 75 GPKPISVLGSTGSIGTQTLDIVAEHED-KFRVVALAA-----------GSNITLLADQVKRFKPQVVAVRNE 134 (435)
Q Consensus 75 ~~k~I~IlGSTGSIG~qtLdVi~~~pd-~f~VvaLaa-----------~~N~~~L~~q~~~f~P~~v~v~~e 134 (435)
..+++.|+|+ |+-|.+..+-++++|+ .|+++|+.. ..|.+.+.+.+++.+.+.|.++-+
T Consensus 142 ~~rrVLIvGa-G~~g~~l~~~L~~~~~~g~~vVGfiDdd~~~g~~VpvlG~~~dL~~~v~~~~IdeViIAip 212 (463)
T PRK10124 142 NKRMVAVAGD-LPAGQMLLESFRNEPWLGFEVVGVYHDPKPGGVSNDWAGNLQQLVEDAKAGKIHNVYIAMS 212 (463)
T ss_pred CCCcEEEEEC-CHHHHHHHHHHhcCccCCeEEEEEEeCCccccCCCCcCCCHHHHHHHHHhCCCCEEEEeCC
Confidence 3468999985 6779999999998876 799999763 357788999999999999998754
No 329
>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative. This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.
Probab=83.05 E-value=8 Score=35.60 Aligned_cols=40 Identities=20% Similarity=0.230 Sum_probs=28.5
Q ss_pred EEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHH
Q 013846 79 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQV 121 (435)
Q Consensus 79 I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~ 121 (435)
|.|.|+||.||..+..-+.+. .++|+.+ +.++.+.+.+..
T Consensus 1 vlItGas~giG~~~a~~l~~~--G~~v~~~-~~~~~~~~~~~~ 40 (239)
T TIGR01831 1 VLVTGASRGIGRAIANRLAAD--GFEICVH-YHSGRSDAESVV 40 (239)
T ss_pred CEEeCCCchHHHHHHHHHHHC--CCEEEEE-eCCCHHHHHHHH
Confidence 579999999999999999876 5666544 444544444333
No 330
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=82.97 E-value=11 Score=37.70 Aligned_cols=90 Identities=14% Similarity=0.227 Sum_probs=57.2
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEEec
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~~G 156 (435)
.+|.|.| +|+||..++.+.+.. ..+|++++. +-+++.+..+++..+.+....+ ...++
T Consensus 182 ~~vlV~G-~G~vG~~av~~Ak~~--G~~vi~~~~--~~~~~~~~~~~~Ga~~~i~~~~--~~~~~--------------- 239 (357)
T PLN02514 182 LRGGILG-LGGVGHMGVKIAKAM--GHHVTVISS--SDKKREEALEHLGADDYLVSSD--AAEMQ--------------- 239 (357)
T ss_pred CeEEEEc-ccHHHHHHHHHHHHC--CCeEEEEeC--CHHHHHHHHHhcCCcEEecCCC--hHHHH---------------
Confidence 5789997 599999999999987 456776553 3455555566777654432211 11111
Q ss_pred hhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCce
Q 013846 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195 (435)
Q Consensus 157 ~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~i 195 (435)
+.. ..+|+|++++.+...+...+.+++.|-++
T Consensus 240 -----~~~--~~~D~vid~~g~~~~~~~~~~~l~~~G~i 271 (357)
T PLN02514 240 -----EAA--DSLDYIIDTVPVFHPLEPYLSLLKLDGKL 271 (357)
T ss_pred -----Hhc--CCCcEEEECCCchHHHHHHHHHhccCCEE
Confidence 111 24899999875556677777777666554
No 331
>PRK08303 short chain dehydrogenase; Provisional
Probab=82.90 E-value=13 Score=36.97 Aligned_cols=32 Identities=19% Similarity=0.059 Sum_probs=26.6
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLa 109 (435)
.|.+.|.|+|+.||..+..-+.+. .++|+.+.
T Consensus 8 ~k~~lITGgs~GIG~aia~~la~~--G~~Vv~~~ 39 (305)
T PRK08303 8 GKVALVAGATRGAGRGIAVELGAA--GATVYVTG 39 (305)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCEEEEEe
Confidence 378999999999999999998875 57777653
No 332
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=82.86 E-value=9.4 Score=36.07 Aligned_cols=31 Identities=23% Similarity=0.184 Sum_probs=25.2
Q ss_pred CeeEEEEecCC--hHhHHHHHHHHhCCCceEEEEE
Q 013846 76 PKPISVLGSTG--SIGTQTLDIVAEHEDKFRVVAL 108 (435)
Q Consensus 76 ~k~I~IlGSTG--SIG~qtLdVi~~~pd~f~VvaL 108 (435)
.|+|.|.|+|| +||..+..-+.++ .++|+..
T Consensus 6 ~k~vlVtGas~~~giG~~~a~~l~~~--G~~vi~~ 38 (256)
T PRK12859 6 NKVAVVTGVSRLDGIGAAICKELAEA--GADIFFT 38 (256)
T ss_pred CcEEEEECCCCCCChHHHHHHHHHHC--CCeEEEE
Confidence 47899999995 8999999998886 4566654
No 333
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=82.68 E-value=1.6 Score=42.15 Aligned_cols=31 Identities=19% Similarity=0.377 Sum_probs=25.7
Q ss_pred EEEEecCChHhHHHHHHHHhCCCceEEEEEecc
Q 013846 79 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG 111 (435)
Q Consensus 79 I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~ 111 (435)
|.|.|+||+||+...+.+.++ .++++++.-+
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~--g~~~v~~~~~ 32 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDK--GITDILVVDN 32 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhC--CCceEEEecC
Confidence 789999999999999998876 5667776543
No 334
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=82.56 E-value=16 Score=34.13 Aligned_cols=49 Identities=18% Similarity=0.317 Sum_probs=33.6
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEE
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVV 129 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v 129 (435)
.++|.|.|++|+||..+..+.+.. ..+|+..+ ++-+.+. .++++..+.+
T Consensus 140 ~~~vlv~g~~~~ig~~~~~~~~~~--g~~v~~~~--~~~~~~~-~~~~~g~~~~ 188 (323)
T cd05276 140 GETVLIHGGASGVGTAAIQLAKAL--GARVIATA--GSEEKLE-ACRALGADVA 188 (323)
T ss_pred CCEEEEEcCcChHHHHHHHHHHHc--CCEEEEEc--CCHHHHH-HHHHcCCCEE
Confidence 368999999999999999999987 45565543 2333333 3355665544
No 335
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=82.48 E-value=13 Score=36.19 Aligned_cols=94 Identities=14% Similarity=0.184 Sum_probs=56.9
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEEe
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~~ 155 (435)
..+|.|.| +|++|..++.+.+.. .++|++.+.. -+. .+.++++..+.+.-..+.. +.
T Consensus 160 g~~vLI~g-~g~vG~~a~~lA~~~--g~~v~~~~~s--~~~-~~~~~~~g~~~v~~~~~~~---~~-------------- 216 (337)
T cd08261 160 GDTVLVVG-AGPIGLGVIQVAKAR--GARVIVVDID--DER-LEFARELGADDTINVGDED---VA-------------- 216 (337)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHc--CCeEEEECCC--HHH-HHHHHHhCCCEEecCcccC---HH--------------
Confidence 35899997 589999999999986 5778777543 232 3455667766554222111 11
Q ss_pred chhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCc
Q 013846 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD 194 (435)
Q Consensus 156 G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ 194 (435)
+.+.+......+|++++.+.|-..+...+..++.+-+
T Consensus 217 --~~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~G~ 253 (337)
T cd08261 217 --ARLRELTDGEGADVVIDATGNPASMEEAVELVAHGGR 253 (337)
T ss_pred --HHHHHHhCCCCCCEEEECCCCHHHHHHHHHHHhcCCE
Confidence 2222333333589999986555556666666665433
No 336
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=82.45 E-value=8.8 Score=36.46 Aligned_cols=94 Identities=19% Similarity=0.237 Sum_probs=56.4
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceE-EEEEeccCCHHHHHHHHHhhCCCEEEEcCc-chHHHHHHHHhcCCCCceE
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFR-VVALAAGSNITLLADQVKRFKPQVVAVRNE-SLLDEIKEALANVEEKPEI 153 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~-VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e-~~~~~l~~~l~~~~~~~~v 153 (435)
..+|.|.| +|++|..++.+.++. .++ |++.+. +-+.+ +.++++..+.+.-..+ +..+.
T Consensus 130 ~~~vlI~g-~g~vg~~~~~la~~~--g~~~v~~~~~--~~~~~-~~~~~~g~~~~~~~~~~~~~~~-------------- 189 (312)
T cd08269 130 GKTVAVIG-AGFIGLLFLQLAAAA--GARRVIAIDR--RPARL-ALARELGATEVVTDDSEAIVER-------------- 189 (312)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHc--CCcEEEEECC--CHHHH-HHHHHhCCceEecCCCcCHHHH--------------
Confidence 35899997 689999999999987 566 655432 23333 3556676544432211 11122
Q ss_pred EechhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCce
Q 013846 154 LAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195 (435)
Q Consensus 154 ~~G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~i 195 (435)
+.++.....+|++++.+.|-..+...+..++.+-++
T Consensus 190 ------l~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~g~~ 225 (312)
T cd08269 190 ------VRELTGGAGADVVIEAVGHQWPLDLAGELVAERGRL 225 (312)
T ss_pred ------HHHHcCCCCCCEEEECCCCHHHHHHHHHHhccCCEE
Confidence 223333346899999865555666677777665443
No 337
>PRK08324 short chain dehydrogenase; Validated
Probab=82.41 E-value=11 Score=41.96 Aligned_cols=45 Identities=22% Similarity=0.182 Sum_probs=34.4
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhC
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFK 125 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~ 125 (435)
|+|.|.|+||.||..+...+.+. .++|+.+. +|-+.+.+...++.
T Consensus 423 k~vLVTGasggIG~~la~~L~~~--Ga~Vvl~~--r~~~~~~~~~~~l~ 467 (681)
T PRK08324 423 KVALVTGAAGGIGKATAKRLAAE--GACVVLAD--LDEEAAEAAAAELG 467 (681)
T ss_pred CEEEEecCCCHHHHHHHHHHHHC--cCEEEEEe--CCHHHHHHHHHHHh
Confidence 78999999999999999999876 46777654 45566665555554
No 338
>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group.
Probab=82.27 E-value=9.1 Score=32.30 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=21.1
Q ss_pred eeEEEEecCChHhHHHHHHHHhCC
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHE 100 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~p 100 (435)
|++.|.|+||+||....+.+.++.
T Consensus 1 ~~~li~Ga~~~iG~~~~~~l~~~g 24 (180)
T smart00822 1 GTYLITGGLGGLGLELARWLAERG 24 (180)
T ss_pred CEEEEEcCCChHHHHHHHHHHHhh
Confidence 578999999999999999998753
No 339
>PRK06940 short chain dehydrogenase; Provisional
Probab=82.23 E-value=11 Score=36.20 Aligned_cols=39 Identities=23% Similarity=0.279 Sum_probs=25.1
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHH
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQV 121 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~ 121 (435)
|.+.|.|+ |.||..+.+-+. ..++|+.+. +|.+.+.+..
T Consensus 3 k~~lItGa-~gIG~~la~~l~---~G~~Vv~~~--r~~~~~~~~~ 41 (275)
T PRK06940 3 EVVVVIGA-GGIGQAIARRVG---AGKKVLLAD--YNEENLEAAA 41 (275)
T ss_pred CEEEEECC-ChHHHHHHHHHh---CCCEEEEEe--CCHHHHHHHH
Confidence 34555565 789999988874 367888764 4555544433
No 340
>PRK07856 short chain dehydrogenase; Provisional
Probab=82.21 E-value=10 Score=35.39 Aligned_cols=32 Identities=22% Similarity=0.200 Sum_probs=26.5
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLa 109 (435)
.|++.|.|+||.||..+.+.+.+. .++|+.+.
T Consensus 6 ~k~~lItGas~gIG~~la~~l~~~--g~~v~~~~ 37 (252)
T PRK07856 6 GRVVLVTGGTRGIGAGIARAFLAA--GATVVVCG 37 (252)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCEEEEEe
Confidence 478999999999999999998875 56776653
No 341
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=82.15 E-value=9.4 Score=38.52 Aligned_cols=70 Identities=34% Similarity=0.434 Sum_probs=40.9
Q ss_pred CeeEEEEecCChHhHHHH--HHHHhCCC---ceE----------------EEEEec--cC-CHHHHHHHHHhhCCCEEEE
Q 013846 76 PKPISVLGSTGSIGTQTL--DIVAEHED---KFR----------------VVALAA--GS-NITLLADQVKRFKPQVVAV 131 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtL--dVi~~~pd---~f~----------------VvaLaa--~~-N~~~L~~q~~~f~P~~v~v 131 (435)
.+.|.|.|.||| |+.|+ .+++..|+ ..+ ++.+-. +. +.+.+.+.+.+.+|+++.+
T Consensus 132 ~~~ilI~G~tGS-GKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iiv 210 (299)
T TIGR02782 132 RKNILVVGGTGS-GKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIV 210 (299)
T ss_pred CCeEEEECCCCC-CHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEE
Confidence 469999999999 87776 33333221 111 223311 12 6677778888888888887
Q ss_pred c---CcchHHHHHHHHhc
Q 013846 132 R---NESLLDEIKEALAN 146 (435)
Q Consensus 132 ~---~e~~~~~l~~~l~~ 146 (435)
. +++.++-++....+
T Consensus 211 GEiR~~ea~~~l~a~~tG 228 (299)
T TIGR02782 211 GEVRGGEALDLLKAWNTG 228 (299)
T ss_pred eccCCHHHHHHHHHHHcC
Confidence 4 33334444444433
No 342
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=81.90 E-value=17 Score=34.15 Aligned_cols=32 Identities=19% Similarity=0.173 Sum_probs=25.9
Q ss_pred CeeEEEEecCC--hHhHHHHHHHHhCCCceEEEEEe
Q 013846 76 PKPISVLGSTG--SIGTQTLDIVAEHEDKFRVVALA 109 (435)
Q Consensus 76 ~k~I~IlGSTG--SIG~qtLdVi~~~pd~f~VvaLa 109 (435)
.|+|.|.|+|| .||.+...-+.+. .++|+.+.
T Consensus 5 ~k~vlItGas~~~giG~~la~~l~~~--G~~vi~~~ 38 (256)
T PRK12748 5 KKIALVTGASRLNGIGAAVCRRLAAK--GIDIFFTY 38 (256)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHc--CCcEEEEc
Confidence 47899999996 6999999888876 57787664
No 343
>PLN02775 Probable dihydrodipicolinate reductase
Probab=81.89 E-value=5.9 Score=40.40 Aligned_cols=32 Identities=25% Similarity=0.442 Sum_probs=28.4
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEec
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa 110 (435)
.||+|.|++|=.|+.+.+-+.+ +.|++|+...
T Consensus 12 i~V~V~Ga~G~MG~~~~~av~~--~~~~Lv~~~~ 43 (286)
T PLN02775 12 IPIMVNGCTGKMGHAVAEAAVS--AGLQLVPVSF 43 (286)
T ss_pred CeEEEECCCChHHHHHHHHHhc--CCCEEEEEec
Confidence 4899999999999999999998 6799998544
No 344
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=81.87 E-value=14 Score=35.72 Aligned_cols=92 Identities=9% Similarity=0.074 Sum_probs=54.6
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEEe
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~~ 155 (435)
..+|.|.|++|.+|..++.+.+.. ..+|++.+. +-+.+ +.++++..+.+.-.++...
T Consensus 141 g~~vlI~g~~g~ig~~~~~lak~~--G~~v~~~~~--~~~~~-~~~~~~g~~~~~~~~~~~~------------------ 197 (327)
T PRK10754 141 DEQFLFHAAAGGVGLIACQWAKAL--GAKLIGTVG--SAQKA-QRAKKAGAWQVINYREENI------------------ 197 (327)
T ss_pred CCEEEEEeCCcHHHHHHHHHHHHc--CCEEEEEeC--CHHHH-HHHHHCCCCEEEcCCCCcH------------------
Confidence 368999999999999999999987 456776652 33333 3346666655543222111
Q ss_pred chhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcC
Q 013846 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAG 192 (435)
Q Consensus 156 G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~g 192 (435)
.+.+.++.....+|++++.+.| ..+...+..++.+
T Consensus 198 -~~~~~~~~~~~~~d~vl~~~~~-~~~~~~~~~l~~~ 232 (327)
T PRK10754 198 -VERVKEITGGKKVRVVYDSVGK-DTWEASLDCLQRR 232 (327)
T ss_pred -HHHHHHHcCCCCeEEEEECCcH-HHHHHHHHHhccC
Confidence 1222222222357888887654 4455555555443
No 345
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=81.86 E-value=15 Score=35.96 Aligned_cols=97 Identities=14% Similarity=0.165 Sum_probs=59.3
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCc-chHHHHHHHHhcCCCCceEE
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNE-SLLDEIKEALANVEEKPEIL 154 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e-~~~~~l~~~l~~~~~~~~v~ 154 (435)
.++|.|.| .|++|..++.+.+...-+ +|++. .++-+++ +.++++..+.+.-.++ +..+.+
T Consensus 164 g~~vlV~~-~g~vg~~~~~la~~~G~~-~v~~~--~~~~~~~-~~~~~lg~~~~~~~~~~~~~~~~-------------- 224 (341)
T PRK05396 164 GEDVLITG-AGPIGIMAAAVAKHVGAR-HVVIT--DVNEYRL-ELARKMGATRAVNVAKEDLRDVM-------------- 224 (341)
T ss_pred CCeEEEEC-CCHHHHHHHHHHHHcCCC-EEEEE--cCCHHHH-HHHHHhCCcEEecCccccHHHHH--------------
Confidence 35888876 599999999999886421 34444 2343443 4566777666542222 111122
Q ss_pred echhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCceee
Q 013846 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIAL 197 (435)
Q Consensus 155 ~G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaL 197 (435)
.++.....+|.|+++..+-..+...+.+++.+-++.+
T Consensus 225 ------~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~ 261 (341)
T PRK05396 225 ------AELGMTEGFDVGLEMSGAPSAFRQMLDNMNHGGRIAM 261 (341)
T ss_pred ------HHhcCCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 2222234689999987666678888888887655533
No 346
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=81.79 E-value=9.3 Score=38.55 Aligned_cols=90 Identities=14% Similarity=0.296 Sum_probs=55.5
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEEec
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~~G 156 (435)
++|.|.|+ |.||..++.+.+.. ..+|++++.. -++..+.++++..+.+.-..+ .+.++
T Consensus 185 ~~VlV~G~-G~vG~~avq~Ak~~--Ga~vi~~~~~--~~~~~~~~~~~Ga~~vi~~~~--~~~~~--------------- 242 (360)
T PLN02586 185 KHLGVAGL-GGLGHVAVKIGKAF--GLKVTVISSS--SNKEDEAINRLGADSFLVSTD--PEKMK--------------- 242 (360)
T ss_pred CEEEEECC-CHHHHHHHHHHHHC--CCEEEEEeCC--cchhhhHHHhCCCcEEEcCCC--HHHHH---------------
Confidence 57888775 99999999999987 4567765432 244455667787765542111 11111
Q ss_pred hhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCce
Q 013846 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195 (435)
Q Consensus 157 ~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~i 195 (435)
++. ..+|+|+++..+...+...+..++.|-++
T Consensus 243 -----~~~--~~~D~vid~~g~~~~~~~~~~~l~~~G~i 274 (360)
T PLN02586 243 -----AAI--GTMDYIIDTVSAVHALGPLLGLLKVNGKL 274 (360)
T ss_pred -----hhc--CCCCEEEECCCCHHHHHHHHHHhcCCcEE
Confidence 111 14799999865444566666777666543
No 347
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=81.67 E-value=14 Score=37.26 Aligned_cols=134 Identities=16% Similarity=0.155 Sum_probs=77.7
Q ss_pred CCCCCeeEEEEecCChHhHHHHHHHHhCCC---ceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCc----ch-HHHHHHH
Q 013846 72 TWDGPKPISVLGSTGSIGTQTLDIVAEHED---KFRVVALAAGSNITLLADQVKRFKPQVVAVRNE----SL-LDEIKEA 143 (435)
Q Consensus 72 ~~~~~k~I~IlGSTGSIG~qtLdVi~~~pd---~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e----~~-~~~l~~~ 143 (435)
....++||+||+|.+ |++.-.++.+... ..+|+++.+++ +.+...|++++-.+..+... .. ..++.+.
T Consensus 85 ~~~~~~ri~vl~Sg~--gsnl~al~~~~~~~~~~~~i~~visn~--~~~~~lA~~~gIp~~~~~~~~~~~~~~~~~~~~~ 160 (286)
T PRK06027 85 DSAERKRVVILVSKE--DHCLGDLLWRWRSGELPVEIAAVISNH--DDLRSLVERFGIPFHHVPVTKETKAEAEARLLEL 160 (286)
T ss_pred ccccCcEEEEEEcCC--CCCHHHHHHHHHcCCCCcEEEEEEEcC--hhHHHHHHHhCCCEEEeccCccccchhHHHHHHH
Confidence 344568999999988 8888888855433 68999987654 23445588888777765321 11 1123333
Q ss_pred HhcCCCCceEEechhHHH--HHhcCCCCCEEEE----ecccccCcHHHHHHHHcCCc-----eeecccceeeeccccchH
Q 013846 144 LANVEEKPEILAGEQGVI--EAARHPDAVTVVT----GIVGCAGLKPTVAAIEAGKD-----IALANKETLIAGGPFVLP 212 (435)
Q Consensus 144 l~~~~~~~~v~~G~egl~--~l~~~~~~D~Vv~----AIvG~aGL~pt~~Ai~~gK~-----iaLANKESLV~aG~lv~~ 212 (435)
+...+.+.-|+.|---+. ++.+... .-++| -+--+-|..|...|+.+|.+ |=..+.| +-.|+++.+
T Consensus 161 l~~~~~Dlivlagy~~il~~~~l~~~~-~~iiNiHpSLLP~yrG~~~~~~ai~~G~~~tG~TiH~v~~~--~D~G~Ii~Q 237 (286)
T PRK06027 161 IDEYQPDLVVLARYMQILSPDFVARFP-GRIINIHHSFLPAFKGAKPYHQAYERGVKLIGATAHYVTAD--LDEGPIIEQ 237 (286)
T ss_pred HHHhCCCEEEEecchhhcCHHHHhhcc-CCceecCcccCCCCCCCCHHHHHHHCCCCeEEEEEEEEcCC--CcCCCcEEE
Confidence 433344455666642222 1222221 12333 23346788899999998864 3444443 356777744
No 348
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=81.51 E-value=8.6 Score=37.91 Aligned_cols=93 Identities=15% Similarity=0.137 Sum_probs=56.7
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCce-EEEEEeccCCHHHHHHHHHhhCCCEEEEcCc-chHHHHHHHHhcCCCCceE
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKF-RVVALAAGSNITLLADQVKRFKPQVVAVRNE-SLLDEIKEALANVEEKPEI 153 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f-~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e-~~~~~l~~~l~~~~~~~~v 153 (435)
.++|.|.|+ |++|..++.+.++. .+ .|++.+ ++-+++ ++++++..+.+.-..+ +..+.
T Consensus 173 g~~vlI~g~-g~vG~~a~q~a~~~--G~~~v~~~~--~~~~~~-~~~~~~ga~~~i~~~~~~~~~~-------------- 232 (351)
T cd08233 173 GDTALVLGA-GPIGLLTILALKAA--GASKIIVSE--PSEARR-ELAEELGATIVLDPTEVDVVAE-------------- 232 (351)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHc--CCCEEEEEC--CCHHHH-HHHHHhCCCEEECCCccCHHHH--------------
Confidence 368999984 99999999999986 45 565553 344443 4556676655442211 11122
Q ss_pred EechhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCc
Q 013846 154 LAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD 194 (435)
Q Consensus 154 ~~G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ 194 (435)
+.++.....+|+|++.+.+...+...+.+++.|-+
T Consensus 233 ------l~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~ 267 (351)
T cd08233 233 ------VRKLTGGGGVDVSFDCAGVQATLDTAIDALRPRGT 267 (351)
T ss_pred ------HHHHhCCCCCCEEEECCCCHHHHHHHHHhccCCCE
Confidence 22222223589999987555566667777766554
No 349
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=81.24 E-value=12 Score=39.01 Aligned_cols=60 Identities=15% Similarity=0.307 Sum_probs=47.9
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCC-ceEEEEEecc--------------CCHHHHHHHHHhhCCCEEEEcCcc
Q 013846 75 GPKPISVLGSTGSIGTQTLDIVAEHED-KFRVVALAAG--------------SNITLLADQVKRFKPQVVAVRNES 135 (435)
Q Consensus 75 ~~k~I~IlGSTGSIG~qtLdVi~~~pd-~f~VvaLaa~--------------~N~~~L~~q~~~f~P~~v~v~~e~ 135 (435)
..+++.|+|+ |.-|.+.++-++++|+ .|+++|..-. .+.+.+.+.+++.+.+.|.++.+.
T Consensus 124 ~~~rvLIvGa-g~~a~~l~~~L~~~~~~g~~vvG~idd~~~~~~~i~g~pVlg~~~~l~~~i~~~~id~ViIa~p~ 198 (445)
T TIGR03025 124 NLRRVLIVGT-GEAARELAAALSRNPDLGYRVVGFVDDRPSDRVEVAGLPVLGKLDDLVELVRAHRVDEVIIALPL 198 (445)
T ss_pred CCCcEEEEEC-CHHHHHHHHHHhhCccCCeEEEEEEeCCcccccccCCCcccCCHHHHHHHHHhCCCCEEEEecCc
Confidence 4578999997 6679999999888775 6999997532 256889999999999999987543
No 350
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=81.11 E-value=14 Score=35.86 Aligned_cols=96 Identities=19% Similarity=0.238 Sum_probs=56.8
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCc-chHHHHHHHHhcCCCCceEE
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNE-SLLDEIKEALANVEEKPEIL 154 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e-~~~~~l~~~l~~~~~~~~v~ 154 (435)
..+|.|.|+ |++|..++.+.+.... -.|++++ ++-++. +.++++..+.+.-..+ +..+.++
T Consensus 168 ~~~VlI~g~-g~vg~~~iqlak~~g~-~~v~~~~--~~~~~~-~~~~~~g~~~vi~~~~~~~~~~i~------------- 229 (347)
T cd05278 168 GSTVAVIGA-GPVGLCAVAGARLLGA-ARIIAVD--SNPERL-DLAKEAGATDIINPKNGDIVEQIL------------- 229 (347)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcCC-CEEEEEe--CCHHHH-HHHHHhCCcEEEcCCcchHHHHHH-------------
Confidence 358888764 9999999999998642 1455552 233332 4556665444332221 1111122
Q ss_pred echhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCcee
Q 013846 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (435)
Q Consensus 155 ~G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ia 196 (435)
++.....+|++++++.|-..+...+..++.+-++.
T Consensus 230 -------~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v 264 (347)
T cd05278 230 -------ELTGGRGVDCVIEAVGFEETFEQAVKVVRPGGTIA 264 (347)
T ss_pred -------HHcCCCCCcEEEEccCCHHHHHHHHHHhhcCCEEE
Confidence 22222458999998766567788888887765544
No 351
>COG3268 Uncharacterized conserved protein [Function unknown]
Probab=81.08 E-value=10 Score=40.10 Aligned_cols=157 Identities=18% Similarity=0.182 Sum_probs=104.2
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEE
Q 013846 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (435)
Q Consensus 75 ~~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~ 154 (435)
.+.-+.|.|+||+.|.=+.+-+.+.-.+- .-|++|.++|.....++.|+.-.. + +
T Consensus 5 ~e~d~iiYGAtGy~G~lvae~l~~~g~~~----aLAgRs~~kl~~l~~~LG~~~~~~----------------p----~- 59 (382)
T COG3268 5 REYDIIIYGATGYAGGLVAEYLAREGLTA----ALAGRSSAKLDALRASLGPEAAVF----------------P----L- 59 (382)
T ss_pred cceeEEEEccccchhHHHHHHHHHcCCch----hhccCCHHHHHHHHHhcCcccccc----------------C----C-
Confidence 34579999999999999999888764442 445789999999998888876442 1 1
Q ss_pred ec-hhHHHHHhcCCCCCEEEEecccc--cCcHHHHHHHHcCCceeecccceeeecccc--chHHhhhcCCeEeec---cc
Q 013846 155 AG-EQGVIEAARHPDAVTVVTGIVGC--AGLKPTVAAIEAGKDIALANKETLIAGGPF--VLPLAHKHNIKILPA---DS 226 (435)
Q Consensus 155 ~G-~egl~~l~~~~~~D~Vv~AIvG~--aGL~pt~~Ai~~gK~iaLANKESLV~aG~l--v~~~a~~~~~~IiPV---DS 226 (435)
| +.++.++++ .+++|+|-+-=+ .|+.-.-+++.+|-+-+=-.-|..|+==.+ -.+.|++.|+.|+|- ||
T Consensus 60 -~~p~~~~~~~~--~~~VVlncvGPyt~~g~plv~aC~~~GTdY~DiTGEi~~fe~~i~~yh~~A~~~Ga~Ii~~cGFDs 136 (382)
T COG3268 60 -GVPAALEAMAS--RTQVVLNCVGPYTRYGEPLVAACAAAGTDYADITGEIMFFENSIDLYHAQAADAGARIIPGCGFDS 136 (382)
T ss_pred -CCHHHHHHHHh--cceEEEeccccccccccHHHHHHHHhCCCeeeccccHHHHHHHHHHHHHHHHhcCCEEeccCCCCc
Confidence 2 677888875 477888764333 356666778888888776666766542111 134577889999884 77
Q ss_pred chhh--HHHhhcCCCCC------ccceEEEEeeCCCCCCCC
Q 013846 227 EHSA--IFQCIQGLPEG------ALRRIILTASGGAFRDWP 259 (435)
Q Consensus 227 EHsA--IfQ~L~g~~~~------~v~kIiLTASGGPFr~~~ 259 (435)
=-+- +++|++..... ..+-++..-+|+=+-.-+
T Consensus 137 IPsDl~v~~l~~~~~~d~~~~~~~t~l~l~s~t~~g~S~GT 177 (382)
T COG3268 137 IPSDLGVYALLKQALPDGTEELIATHLALGSFTGSGISGGT 177 (382)
T ss_pred CccchHHHHHHHhhCcccccchhhhheeeeecccCCccccc
Confidence 6554 48888754444 234455555554443333
No 352
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=80.87 E-value=14 Score=35.56 Aligned_cols=94 Identities=16% Similarity=0.174 Sum_probs=55.4
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHh-hCCCEEEEcCcchHHHHHHHHhcCCCCceEE
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR-FKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~-f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~ 154 (435)
..+|.|.|++|++|..+..+.++. ..+|++++ ++-+.+ +.+++ +..+.+.-..+. .+.
T Consensus 146 ~~~vlI~g~~g~ig~~~~~~a~~~--G~~vi~~~--~~~~~~-~~~~~~~g~~~~~~~~~~---~~~------------- 204 (329)
T cd05288 146 GETVVVSAAAGAVGSVVGQIAKLL--GARVVGIA--GSDEKC-RWLVEELGFDAAINYKTP---DLA------------- 204 (329)
T ss_pred CCEEEEecCcchHHHHHHHHHHHc--CCEEEEEe--CCHHHH-HHHHhhcCCceEEecCCh---hHH-------------
Confidence 368999999999999999999986 45777665 333333 23344 554433322111 011
Q ss_pred echhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCce
Q 013846 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195 (435)
Q Consensus 155 ~G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~i 195 (435)
+.+.++.. ..+|++++...| ..+...+..++.+-++
T Consensus 205 ---~~v~~~~~-~~~d~vi~~~g~-~~~~~~~~~l~~~G~~ 240 (329)
T cd05288 205 ---EALKEAAP-DGIDVYFDNVGG-EILDAALTLLNKGGRI 240 (329)
T ss_pred ---HHHHHhcc-CCceEEEEcchH-HHHHHHHHhcCCCceE
Confidence 11222222 358999987544 5666667777655443
No 353
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=80.86 E-value=19 Score=36.63 Aligned_cols=114 Identities=15% Similarity=0.130 Sum_probs=64.5
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcch-HHHHHHHHhc-CC-CCce
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESL-LDEIKEALAN-VE-EKPE 152 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~-~~~l~~~l~~-~~-~~~~ 152 (435)
-.+|.|.|++|.||..++.+.+.. ..+++.++ .+-++ .+.++++....+.-.++.. ...+.+.... .. ...+
T Consensus 190 g~~vlV~Ga~g~vG~~ai~~ak~~--G~~vi~~~--~~~~~-~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (398)
T TIGR01751 190 GDNVLIWGAAGGLGSYATQLARAG--GGNPVAVV--SSPEK-AEYCRELGAEAVIDRNDFGHWGRLPDLNTQAPKEWTKS 264 (398)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHc--CCeEEEEc--CCHHH-HHHHHHcCCCEEecCCCcchhhccccccccccchhhhc
Confidence 368999999999999999999987 45676665 33344 3566778877665322110 0001000000 00 0000
Q ss_pred EEechhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCce
Q 013846 153 ILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195 (435)
Q Consensus 153 v~~G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~i 195 (435)
...-.+.+.++.....+|+|++.. |...+..++.+++.+-++
T Consensus 265 ~~~~~~~~~~~~~~~g~d~vld~~-g~~~~~~~~~~l~~~G~~ 306 (398)
T TIGR01751 265 FKRFGKRIRELTGGEDPDIVFEHP-GRATFPTSVFVCRRGGMV 306 (398)
T ss_pred chhHHHHHHHHcCCCCceEEEECC-cHHHHHHHHHhhccCCEE
Confidence 011123444444445699999985 446677788887765443
No 354
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=80.78 E-value=16 Score=36.81 Aligned_cols=110 Identities=16% Similarity=0.166 Sum_probs=61.8
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcch-HHHHH----HHHhcCCCCc
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESL-LDEIK----EALANVEEKP 151 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~-~~~l~----~~l~~~~~~~ 151 (435)
.+|.|.|++|+||..++.+.+.. ..++++++ ++-+++ ++++++..+.+.-.++.. ..... +..... .+
T Consensus 195 ~~vlV~ga~g~iG~a~~~lak~~--G~~vv~~~--~s~~~~-~~~~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~- 267 (393)
T cd08246 195 DNVLIWGASGGLGSMAIQLARAA--GANPVAVV--SSEEKA-EYCRALGAEGVINRRDFDHWGVLPDVNSEAYTAW-TK- 267 (393)
T ss_pred CEEEEECCCcHHHHHHHHHHHHc--CCeEEEEe--CCHHHH-HHHHHcCCCEEEcccccccccccccccchhhhhh-hh-
Confidence 58999999999999999999987 56677654 344443 566778766554322110 00000 000000 00
Q ss_pred eEEechhHHHHHhcCC-CCCEEEEecccccCcHHHHHHHHcCCc
Q 013846 152 EILAGEQGVIEAARHP-DAVTVVTGIVGCAGLKPTVAAIEAGKD 194 (435)
Q Consensus 152 ~v~~G~egl~~l~~~~-~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ 194 (435)
....-.+.+.++.... .+|+|++.. |...+...+..++.+-+
T Consensus 268 ~~~~~~~~v~~l~~~~~g~d~vid~~-g~~~~~~~~~~l~~~G~ 310 (393)
T cd08246 268 EARRFGKAIWDILGGREDPDIVFEHP-GRATFPTSVFVCDRGGM 310 (393)
T ss_pred ccchHHHHHHHHhCCCCCCeEEEECC-chHhHHHHHHHhccCCE
Confidence 0000123445555444 699999985 44667767776665433
No 355
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=80.67 E-value=4.3 Score=35.28 Aligned_cols=30 Identities=27% Similarity=0.526 Sum_probs=22.4
Q ss_pred eeEEEEecC---ChHhHHHHHHHHhCCCceEEEEE
Q 013846 77 KPISVLGST---GSIGTQTLDIVAEHEDKFRVVAL 108 (435)
Q Consensus 77 k~I~IlGST---GSIG~qtLdVi~~~pd~f~VvaL 108 (435)
|+|+|+|++ ++.|...++-++++ .|+|+.+
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~--G~~v~~V 33 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAA--GYEVYPV 33 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHT--T-EEEEE
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhC--CCEEEEE
Confidence 689999987 88999999999884 5778776
No 356
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=80.64 E-value=15 Score=35.74 Aligned_cols=93 Identities=18% Similarity=0.247 Sum_probs=54.0
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCce-EEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEE
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKF-RVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f-~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~ 154 (435)
.++|.|.| +|++|..++.+.+.. .+ +|++.+ ++-++. +.++++.-..+...+++....
T Consensus 168 ~~~vlI~g-~g~vg~~~~~~a~~~--g~~~v~~~~--~~~~~~-~~~~~~g~~~~~~~~~~~~~~--------------- 226 (344)
T cd08284 168 GDTVAVIG-CGPVGLCAVLSAQVL--GAARVFAVD--PVPERL-ERAAALGAEPINFEDAEPVER--------------- 226 (344)
T ss_pred CCEEEEEC-CcHHHHHHHHHHHHc--CCceEEEEc--CCHHHH-HHHHHhCCeEEecCCcCHHHH---------------
Confidence 36899997 799999999999986 44 566652 233332 334555532211111111112
Q ss_pred echhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCc
Q 013846 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD 194 (435)
Q Consensus 155 ~G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ 194 (435)
+.++.....+|+++++..+-..+...+..++.+-+
T Consensus 227 -----l~~~~~~~~~dvvid~~~~~~~~~~~~~~l~~~g~ 261 (344)
T cd08284 227 -----VREATEGRGADVVLEAVGGAAALDLAFDLVRPGGV 261 (344)
T ss_pred -----HHHHhCCCCCCEEEECCCCHHHHHHHHHhcccCCE
Confidence 22233334589999987765667777777765543
No 357
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=80.61 E-value=21 Score=34.78 Aligned_cols=96 Identities=18% Similarity=0.260 Sum_probs=60.8
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCc-chHHHHHHHHhcCCCCceEE
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNE-SLLDEIKEALANVEEKPEIL 154 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e-~~~~~l~~~l~~~~~~~~v~ 154 (435)
..+|.|.|++|++|..++.+.++. .++|++++.. -++. +.++++..+.+.-... +..+.+.
T Consensus 166 ~~~vlV~g~~~~vg~~~~~~a~~~--g~~v~~~~~~--~~~~-~~~~~~g~~~v~~~~~~~~~~~~~------------- 227 (341)
T cd08297 166 GDWVVISGAGGGLGHLGVQYAKAM--GLRVIAIDVG--DEKL-ELAKELGADAFVDFKKSDDVEAVK------------- 227 (341)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC--CCeEEEEeCC--HHHH-HHHHHcCCcEEEcCCCccHHHHHH-------------
Confidence 368999999999999999999987 4577766533 3443 3446677655443221 1112222
Q ss_pred echhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCcee
Q 013846 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (435)
Q Consensus 155 ~G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ia 196 (435)
+......+|.++++..+-..+...+.+++.+-++.
T Consensus 228 -------~~~~~~~vd~vl~~~~~~~~~~~~~~~l~~~g~~v 262 (341)
T cd08297 228 -------ELTGGGGAHAVVVTAVSAAAYEQALDYLRPGGTLV 262 (341)
T ss_pred -------HHhcCCCCCEEEEcCCchHHHHHHHHHhhcCCEEE
Confidence 22222358899986666667777777776654443
No 358
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=80.58 E-value=21 Score=35.85 Aligned_cols=92 Identities=13% Similarity=0.210 Sum_probs=56.3
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCce-EEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEE
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKF-RVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f-~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~ 154 (435)
..+|.|+|+ |+||..++.+.+.. .. +|+++. ++-+++ +.++++..+.+.-..+.. +.+.+.
T Consensus 187 g~~VlV~G~-G~vG~~a~~~ak~~--G~~~vi~~~--~~~~~~-~~~~~lGa~~~i~~~~~~-~~~~~~----------- 248 (368)
T cd08300 187 GSTVAVFGL-GAVGLAVIQGAKAA--GASRIIGID--INPDKF-ELAKKFGATDCVNPKDHD-KPIQQV----------- 248 (368)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHc--CCCeEEEEe--CCHHHH-HHHHHcCCCEEEcccccc-hHHHHH-----------
Confidence 468999985 99999999999986 34 466554 334444 355778776654222110 011111
Q ss_pred echhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHc
Q 013846 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEA 191 (435)
Q Consensus 155 ~G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~ 191 (435)
+.++... .+|+|++++.|...+.-.+..++.
T Consensus 249 -----v~~~~~~-g~d~vid~~g~~~~~~~a~~~l~~ 279 (368)
T cd08300 249 -----LVEMTDG-GVDYTFECIGNVKVMRAALEACHK 279 (368)
T ss_pred -----HHHHhCC-CCcEEEECCCChHHHHHHHHhhcc
Confidence 1222222 589999987666677777777754
No 359
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=80.49 E-value=11 Score=37.94 Aligned_cols=93 Identities=15% Similarity=0.124 Sum_probs=57.8
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCce-EEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEEe
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKF-RVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f-~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~~ 155 (435)
.+|.|.|+ |.||..+..+.+.. .. +|+++. ++-+++ +.++++..+.+.-..+.. +.
T Consensus 193 ~~VlV~G~-G~vG~~a~~lak~~--G~~~Vi~~~--~~~~r~-~~a~~~Ga~~~i~~~~~~---~~-------------- 249 (371)
T cd08281 193 QSVAVVGL-GGVGLSALLGAVAA--GASQVVAVD--LNEDKL-ALARELGATATVNAGDPN---AV-------------- 249 (371)
T ss_pred CEEEEECC-CHHHHHHHHHHHHc--CCCcEEEEc--CCHHHH-HHHHHcCCceEeCCCchh---HH--------------
Confidence 58999995 99999999999876 44 466554 344443 456778776554322111 11
Q ss_pred chhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCce
Q 013846 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195 (435)
Q Consensus 156 G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~i 195 (435)
+.+.++... .+|+|++++.+-..+.-.+.+++.|-++
T Consensus 250 --~~i~~~~~~-g~d~vid~~G~~~~~~~~~~~l~~~G~i 286 (371)
T cd08281 250 --EQVRELTGG-GVDYAFEMAGSVPALETAYEITRRGGTT 286 (371)
T ss_pred --HHHHHHhCC-CCCEEEECCCChHHHHHHHHHHhcCCEE
Confidence 112222222 5899999875556777777777776554
No 360
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=80.48 E-value=18 Score=35.59 Aligned_cols=98 Identities=14% Similarity=0.126 Sum_probs=54.9
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceE-EEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEE
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFR-VVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~-VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~ 154 (435)
..+|.|.| +|++|..++.+.+... .+ |++.+ ++-++ .++++++..+.+.-.++....++.
T Consensus 163 g~~vlI~g-~g~vG~~a~~lak~~G--~~~v~~~~--~~~~~-~~~~~~~g~~~vi~~~~~~~~~~~------------- 223 (343)
T cd05285 163 GDTVLVFG-AGPIGLLTAAVAKAFG--ATKVVVTD--IDPSR-LEFAKELGATHTVNVRTEDTPESA------------- 223 (343)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHcC--CcEEEEEC--CCHHH-HHHHHHcCCcEEeccccccchhHH-------------
Confidence 35899976 5899999999999864 34 44433 22222 345566666555433222211111
Q ss_pred echhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCce
Q 013846 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195 (435)
Q Consensus 155 ~G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~i 195 (435)
+.+.+......+|+|++.+.+-..+...+..++.+-++
T Consensus 224 ---~~~~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~ 261 (343)
T cd05285 224 ---EKIAELLGGKGPDVVIECTGAESCIQTAIYATRPGGTV 261 (343)
T ss_pred ---HHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcCCEE
Confidence 11222222335899999865544667777777765443
No 361
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=80.47 E-value=14 Score=37.79 Aligned_cols=91 Identities=15% Similarity=0.249 Sum_probs=56.7
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEEe
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~~ 155 (435)
-++|+|.|+ |.||..++.+.+... .+|++++.. -+...+.++++..+.+.-..+ .+.+
T Consensus 179 g~~VlV~G~-G~vG~~avq~Ak~~G--a~Vi~~~~~--~~~~~~~a~~lGa~~~i~~~~--~~~v--------------- 236 (375)
T PLN02178 179 GKRLGVNGL-GGLGHIAVKIGKAFG--LRVTVISRS--SEKEREAIDRLGADSFLVTTD--SQKM--------------- 236 (375)
T ss_pred CCEEEEEcc-cHHHHHHHHHHHHcC--CeEEEEeCC--hHHhHHHHHhCCCcEEEcCcC--HHHH---------------
Confidence 357888886 999999999999873 467665433 344456677888766542111 1111
Q ss_pred chhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCce
Q 013846 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195 (435)
Q Consensus 156 G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~i 195 (435)
.+.. ..+|+|+++..+-..+...+.+++.|-++
T Consensus 237 -----~~~~--~~~D~vid~~G~~~~~~~~~~~l~~~G~i 269 (375)
T PLN02178 237 -----KEAV--GTMDFIIDTVSAEHALLPLFSLLKVSGKL 269 (375)
T ss_pred -----HHhh--CCCcEEEECCCcHHHHHHHHHhhcCCCEE
Confidence 1111 14899999864444566666766665544
No 362
>PRK06720 hypothetical protein; Provisional
Probab=80.36 E-value=21 Score=32.92 Aligned_cols=64 Identities=14% Similarity=0.121 Sum_probs=38.4
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccC--CHHHHHHHHHhhCCCEEEE-cCcchHHHHHH
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGS--NITLLADQVKRFKPQVVAV-RNESLLDEIKE 142 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~--N~~~L~~q~~~f~P~~v~v-~~e~~~~~l~~ 142 (435)
.|.+.|.|++|.||......+.+. .++|+... ++ +.+...++..+..++...+ .|-...+.+++
T Consensus 16 gk~~lVTGa~~GIG~aia~~l~~~--G~~V~l~~-r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~ 82 (169)
T PRK06720 16 GKVAIVTGGGIGIGRNTALLLAKQ--GAKVIVTD-IDQESGQATVEEITNLGGEALFVSYDMEKQGDWQR 82 (169)
T ss_pred CCEEEEecCCChHHHHHHHHHHHC--CCEEEEEE-CCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHH
Confidence 468999999999999999988876 46665443 22 1233334444444554333 44444444444
No 363
>PLN02686 cinnamoyl-CoA reductase
Probab=80.34 E-value=2.4 Score=43.08 Aligned_cols=34 Identities=18% Similarity=0.307 Sum_probs=28.7
Q ss_pred CCCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 013846 74 DGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (435)
Q Consensus 74 ~~~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLa 109 (435)
..+|+|.|.|+||+||....+-+.+. .++|++++
T Consensus 51 ~~~k~VLVTGatGfIG~~lv~~L~~~--G~~V~~~~ 84 (367)
T PLN02686 51 AEARLVCVTGGVSFLGLAIVDRLLRH--GYSVRIAV 84 (367)
T ss_pred CCCCEEEEECCchHHHHHHHHHHHHC--CCEEEEEe
Confidence 44689999999999999999988775 67888765
No 364
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=80.30 E-value=4.2 Score=40.22 Aligned_cols=36 Identities=19% Similarity=0.279 Sum_probs=29.5
Q ss_pred EEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHH
Q 013846 80 SVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNIT 115 (435)
Q Consensus 80 ~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~ 115 (435)
.|.|+||++|...++-+.++.+.++|.++.-..+..
T Consensus 1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~ 36 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPK 36 (280)
T ss_pred CEEcCCcHHHHHHHHHHHHCCCceEEEEcccccccc
Confidence 389999999999999999988778888876544433
No 365
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=79.79 E-value=18 Score=34.87 Aligned_cols=96 Identities=15% Similarity=0.164 Sum_probs=59.6
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEEe
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~~ 155 (435)
..+|.|.|++|++|..++.+.+... ..+|++.+... +. .+.++++..+.+.-..+. +.+.+
T Consensus 150 g~~vlV~g~~g~vg~~~~~~a~~~G-~~~v~~~~~~~--~~-~~~~~~~g~~~~~~~~~~----~~~~i----------- 210 (336)
T cd08252 150 GKTLLIIGGAGGVGSIAIQLAKQLT-GLTVIATASRP--ES-IAWVKELGADHVINHHQD----LAEQL----------- 210 (336)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHcC-CcEEEEEcCCh--hh-HHHHHhcCCcEEEeCCcc----HHHHH-----------
Confidence 4689999999999999999998873 16777765432 22 233466776554321111 11111
Q ss_pred chhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCcee
Q 013846 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (435)
Q Consensus 156 G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ia 196 (435)
... ....+|++++.+.|-..+...+..++.+-++.
T Consensus 211 -----~~~-~~~~~d~vl~~~~~~~~~~~~~~~l~~~g~~v 245 (336)
T cd08252 211 -----EAL-GIEPVDYIFCLTDTDQHWDAMAELIAPQGHIC 245 (336)
T ss_pred -----Hhh-CCCCCCEEEEccCcHHHHHHHHHHhcCCCEEE
Confidence 111 12358999998776667777788877665444
No 366
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=79.44 E-value=24 Score=36.53 Aligned_cols=135 Identities=13% Similarity=0.175 Sum_probs=70.8
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcch--HHHHHHHHhcCCCCce
Q 013846 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESL--LDEIKEALANVEEKPE 152 (435)
Q Consensus 75 ~~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~--~~~l~~~l~~~~~~~~ 152 (435)
.+++|+|+|++|.+|.+.-..+++. .++|.+..- +..+...+.+. +.++|.++-+.. .+.+++ +.....++-
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~--G~~V~~~d~-~~~~~~~~~~~--~aDlVilavP~~~~~~~~~~-l~~l~~~~i 170 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLS--GYQVRILEQ-DDWDRAEDILA--DAGMVIVSVPIHLTEEVIAR-LPPLPEDCI 170 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHC--CCeEEEeCC-CcchhHHHHHh--cCCEEEEeCcHHHHHHHHHH-HhCCCCCcE
Confidence 3478999999999999999999886 366666542 22333333333 467887754332 222332 221111211
Q ss_pred -EEech--hH-HHHHhcCCCCCEE-EEecccccCcHHHHHHHHcCCceeecccceeeecc------ccchHHhhhcCCeE
Q 013846 153 -ILAGE--QG-VIEAARHPDAVTV-VTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG------PFVLPLAHKHNIKI 221 (435)
Q Consensus 153 -v~~G~--eg-l~~l~~~~~~D~V-v~AIvG~aGL~pt~~Ai~~gK~iaLANKESLV~aG------~lv~~~a~~~~~~I 221 (435)
+-+|. .. +.++.+.....+| .-=+.|. - .=.++++-.+++.| ..+.++.+..|.++
T Consensus 171 v~Dv~SvK~~~~~~~~~~~~~~fvg~HPm~G~------~-------~~~~~~~~vv~~~~~~~~~~~~~~~l~~~lG~~v 237 (374)
T PRK11199 171 LVDLTSVKNAPLQAMLAAHSGPVLGLHPMFGP------D-------VGSLAKQVVVVCDGRQPEAYQWLLEQIQVWGARL 237 (374)
T ss_pred EEECCCccHHHHHHHHHhCCCCEEeeCCCCCC------C-------CcccCCCEEEEcCCCCchHHHHHHHHHHHCCCEE
Confidence 11122 22 3334332222222 1112221 0 01245555555555 24677888889999
Q ss_pred eecccch
Q 013846 222 LPADSEH 228 (435)
Q Consensus 222 iPVDSEH 228 (435)
+.+|.|.
T Consensus 238 ~~~~~~~ 244 (374)
T PRK11199 238 HRISAVE 244 (374)
T ss_pred EECCHHH
Confidence 9999865
No 367
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=79.09 E-value=11 Score=33.28 Aligned_cols=46 Identities=13% Similarity=0.192 Sum_probs=33.4
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhC
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFK 125 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~ 125 (435)
.+++.|+|+ |=+|+.++.-+.+. .++=+-+ +++|.+++.+.+++|.
T Consensus 12 ~~~vlviGa-Gg~ar~v~~~L~~~--g~~~i~i-~nRt~~ra~~l~~~~~ 57 (135)
T PF01488_consen 12 GKRVLVIGA-GGAARAVAAALAAL--GAKEITI-VNRTPERAEALAEEFG 57 (135)
T ss_dssp TSEEEEESS-SHHHHHHHHHHHHT--TSSEEEE-EESSHHHHHHHHHHHT
T ss_pred CCEEEEECC-HHHHHHHHHHHHHc--CCCEEEE-EECCHHHHHHHHHHcC
Confidence 468999998 55788888888776 3332222 2588999999999883
No 368
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=79.07 E-value=20 Score=35.19 Aligned_cols=91 Identities=16% Similarity=0.239 Sum_probs=54.9
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEEe
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~~ 155 (435)
-.+|.|+| +|+||..+..+.+.. .++|++++. +-+.+ +.++++..+.+.-..+.. +.+.
T Consensus 164 ~~~vlV~g-~g~iG~~~~~~a~~~--G~~vi~~~~--~~~~~-~~~~~~g~~~~i~~~~~~---~~~~------------ 222 (333)
T cd08296 164 GDLVAVQG-IGGLGHLAVQYAAKM--GFRTVAISR--GSDKA-DLARKLGAHHYIDTSKED---VAEA------------ 222 (333)
T ss_pred CCEEEEEC-CcHHHHHHHHHHHHC--CCeEEEEeC--ChHHH-HHHHHcCCcEEecCCCcc---HHHH------------
Confidence 35899999 899999999999987 456766543 44443 344777766554222211 1111
Q ss_pred chhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCc
Q 013846 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD 194 (435)
Q Consensus 156 G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ 194 (435)
+.++ ..+|.++++..+-..+...+.+++.+-+
T Consensus 223 ----~~~~---~~~d~vi~~~g~~~~~~~~~~~l~~~G~ 254 (333)
T cd08296 223 ----LQEL---GGAKLILATAPNAKAISALVGGLAPRGK 254 (333)
T ss_pred ----HHhc---CCCCEEEECCCchHHHHHHHHHcccCCE
Confidence 1111 2578999875434556666666655533
No 369
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=79.06 E-value=17 Score=35.40 Aligned_cols=95 Identities=18% Similarity=0.171 Sum_probs=57.4
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceE-EEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEE
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFR-VVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~-VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~ 154 (435)
.++|.|.| .|++|..++.+.++. ..+ |++.+. +-++. +..+++..+.+.-.++.. +.
T Consensus 166 g~~VlV~g-~g~vg~~~~~la~~~--g~~~v~~~~~--s~~~~-~~~~~~g~~~~~~~~~~~---~~------------- 223 (343)
T cd08235 166 GDTVLVIG-AGPIGLLHAMLAKAS--GARKVIVSDL--NEFRL-EFAKKLGADYTIDAAEED---LV------------- 223 (343)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHc--CCcEEEEECC--CHHHH-HHHHHhCCcEEecCCccC---HH-------------
Confidence 35899997 589999999998876 344 554433 22332 233567665544322111 11
Q ss_pred echhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCce
Q 013846 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195 (435)
Q Consensus 155 ~G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~i 195 (435)
+.+.++.....+|+|++.+.|-..+...+.+++.+-++
T Consensus 224 ---~~i~~~~~~~~vd~vld~~~~~~~~~~~~~~l~~~g~~ 261 (343)
T cd08235 224 ---EKVRELTDGRGADVVIVATGSPEAQAQALELVRKGGRI 261 (343)
T ss_pred ---HHHHHHhCCcCCCEEEECCCChHHHHHHHHHhhcCCEE
Confidence 12222333345899999877766777788888766554
No 370
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=78.89 E-value=20 Score=34.48 Aligned_cols=91 Identities=23% Similarity=0.295 Sum_probs=55.9
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEEech
Q 013846 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGE 157 (435)
Q Consensus 78 ~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~~G~ 157 (435)
+|.|.|++|++|..+..+.+.. ..+|++.+.. -++. +.++++..+.+.-.++... .++
T Consensus 148 ~vlI~g~~g~vg~~~~~la~~~--G~~vi~~~~~--~~~~-~~~~~~g~~~~~~~~~~~~-~~~---------------- 205 (323)
T TIGR02823 148 PVLVTGATGGVGSLAVAILSKL--GYEVVASTGK--AEEE-DYLKELGASEVIDREDLSP-PGK---------------- 205 (323)
T ss_pred eEEEEcCCcHHHHHHHHHHHHc--CCeEEEEeCC--HHHH-HHHHhcCCcEEEccccHHH-HHH----------------
Confidence 8999999999999999999987 4567765533 2333 5567777755443221110 111
Q ss_pred hHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCcee
Q 013846 158 QGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (435)
Q Consensus 158 egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ia 196 (435)
.+.. ..+|.+++...| ..+...+..++.+-++.
T Consensus 206 ----~~~~-~~~d~vld~~g~-~~~~~~~~~l~~~G~~v 238 (323)
T TIGR02823 206 ----PLEK-ERWAGAVDTVGG-HTLANVLAQLKYGGAVA 238 (323)
T ss_pred ----HhcC-CCceEEEECccH-HHHHHHHHHhCCCCEEE
Confidence 1111 137889987554 45666666666554433
No 371
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=78.82 E-value=12 Score=35.40 Aligned_cols=43 Identities=23% Similarity=0.366 Sum_probs=31.4
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f 124 (435)
|+|+|.|. |.+|..+..-+.++ ..+|++ ...|.+.+.+...++
T Consensus 29 k~v~I~G~-G~vG~~~A~~L~~~--G~~Vvv--~D~~~~~~~~~~~~~ 71 (200)
T cd01075 29 KTVAVQGL-GKVGYKLAEHLLEE--GAKLIV--ADINEEAVARAAELF 71 (200)
T ss_pred CEEEEECC-CHHHHHHHHHHHHC--CCEEEE--EcCCHHHHHHHHHHc
Confidence 67999999 79999999998876 567873 345666555544444
No 372
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=78.77 E-value=17 Score=35.81 Aligned_cols=94 Identities=12% Similarity=0.139 Sum_probs=56.4
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcc-hHHHHHHHHhcCCCCceEEe
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNES-LLDEIKEALANVEEKPEILA 155 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~-~~~~l~~~l~~~~~~~~v~~ 155 (435)
.+|.| +++|++|..++.+.+..-- -.|++. .++-+++ +.++++..+.+.-..+. ..+++
T Consensus 176 ~~vlI-~g~g~vG~~~~~~a~~~G~-~~v~~~--~~~~~~~-~~~~~~g~~~v~~~~~~~~~~~~--------------- 235 (350)
T cd08256 176 DVVVL-AGAGPLGLGMIGAARLKNP-KKLIVL--DLKDERL-ALARKFGADVVLNPPEVDVVEKI--------------- 235 (350)
T ss_pred CEEEE-ECCCHHHHHHHHHHHHcCC-cEEEEE--cCCHHHH-HHHHHcCCcEEecCCCcCHHHHH---------------
Confidence 46777 6679999999999988632 123332 2444544 46677776554322211 11222
Q ss_pred chhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCce
Q 013846 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195 (435)
Q Consensus 156 G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~i 195 (435)
.++.....+|++++.+.|-..+...+.+++.+-++
T Consensus 236 -----~~~~~~~~vdvvld~~g~~~~~~~~~~~l~~~G~~ 270 (350)
T cd08256 236 -----KELTGGYGCDIYIEATGHPSAVEQGLNMIRKLGRF 270 (350)
T ss_pred -----HHHhCCCCCCEEEECCCChHHHHHHHHHhhcCCEE
Confidence 22222335899999876556677788888776543
No 373
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=78.67 E-value=13 Score=38.02 Aligned_cols=72 Identities=29% Similarity=0.394 Sum_probs=43.1
Q ss_pred CCeeEEEEecCChHhHHHH-H-HHHh---CCCceE----------------EEEEe--ccCCHHHHHHHHHhhCCCEEEE
Q 013846 75 GPKPISVLGSTGSIGTQTL-D-IVAE---HEDKFR----------------VVALA--AGSNITLLADQVKRFKPQVVAV 131 (435)
Q Consensus 75 ~~k~I~IlGSTGSIG~qtL-d-Vi~~---~pd~f~----------------VvaLa--a~~N~~~L~~q~~~f~P~~v~v 131 (435)
..++|.|.|.||| |+.|+ . ++.. .|..-+ .+.+- ..-+.+.|.+.+.+.+|+.+.+
T Consensus 147 ~~~~ilI~G~tGS-GKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~Iiv 225 (319)
T PRK13894 147 AHRNILVIGGTGS-GKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILV 225 (319)
T ss_pred cCCeEEEECCCCC-CHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEE
Confidence 3479999999999 86665 3 3332 121111 22221 2346788888888999999998
Q ss_pred cC---cchHHHHHHHHhcC
Q 013846 132 RN---ESLLDEIKEALANV 147 (435)
Q Consensus 132 ~~---e~~~~~l~~~l~~~ 147 (435)
.. .+.+.-|+....++
T Consensus 226 GEiR~~Ea~~~l~A~~tGh 244 (319)
T PRK13894 226 GEVRGPEALDLLMAWNTGH 244 (319)
T ss_pred eccCCHHHHHHHHHHHcCC
Confidence 53 33444445444343
No 374
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=78.56 E-value=22 Score=35.99 Aligned_cols=131 Identities=14% Similarity=0.156 Sum_probs=76.1
Q ss_pred CCCeeEEEEecCChHhHHHHHHHHhCC---CceEEEEEec-cCCHHHHHHHHHhhCCCEEEEc--Cc--chH-HHHHHHH
Q 013846 74 DGPKPISVLGSTGSIGTQTLDIVAEHE---DKFRVVALAA-GSNITLLADQVKRFKPQVVAVR--NE--SLL-DEIKEAL 144 (435)
Q Consensus 74 ~~~k~I~IlGSTGSIG~qtLdVi~~~p---d~f~VvaLaa-~~N~~~L~~q~~~f~P~~v~v~--~e--~~~-~~l~~~l 144 (435)
..++||+||||.+ |++...++.+.. -..+|+++.+ +.++. ..+++++-.+..+. .+ ..+ .++.+.+
T Consensus 87 ~~~~ri~vl~Sg~--g~nl~al~~~~~~~~~~~~i~~visn~~~~~---~lA~~~gIp~~~~~~~~~~~~~~~~~~~~~l 161 (286)
T PRK13011 87 AARPKVLIMVSKF--DHCLNDLLYRWRIGELPMDIVGVVSNHPDLE---PLAAWHGIPFHHFPITPDTKPQQEAQVLDVV 161 (286)
T ss_pred ccCceEEEEEcCC--cccHHHHHHHHHcCCCCcEEEEEEECCccHH---HHHHHhCCCEEEeCCCcCchhhhHHHHHHHH
Confidence 3456899999986 888888886532 2589999866 44444 44888887777652 11 111 1233333
Q ss_pred hcCCCCceEEechhHHH--HHhcCCCCCEEEE----ecccccCcHHHHHHHHcCC-----ceeecccceeeeccccchH
Q 013846 145 ANVEEKPEILAGEQGVI--EAARHPDAVTVVT----GIVGCAGLKPTVAAIEAGK-----DIALANKETLIAGGPFVLP 212 (435)
Q Consensus 145 ~~~~~~~~v~~G~egl~--~l~~~~~~D~Vv~----AIvG~aGL~pt~~Ai~~gK-----~iaLANKESLV~aG~lv~~ 212 (435)
...+.+.-|+.|---+. ++.+.. ..-++| -+--+-|..|...|+.+|. +|=..++| +-+|+++.+
T Consensus 162 ~~~~~Dlivlagy~~il~~~~l~~~-~~~iiNiHpSLLP~~rG~~~~~~ai~~G~~~tG~TvH~v~~~--~D~G~Ii~Q 237 (286)
T PRK13011 162 EESGAELVVLARYMQVLSPELCRKL-AGRAINIHHSFLPGFKGAKPYHQAYERGVKLIGATAHYVTDD--LDEGPIIEQ 237 (286)
T ss_pred HHhCcCEEEEeChhhhCCHHHHhhc-cCCeEEeccccCCCCCCCcHHHHHHHCCCCeEEEEEEEEcCC--CcCCCcEEE
Confidence 33334455556543222 112211 112343 2445678899999999985 44555654 467888755
No 375
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=78.55 E-value=12 Score=33.89 Aligned_cols=46 Identities=22% Similarity=0.260 Sum_probs=41.6
Q ss_pred hHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcC
Q 013846 87 SIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRN 133 (435)
Q Consensus 87 SIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~ 133 (435)
.||++.+..+-++ ..|+|+-|-.....+++.+.+++.+|+.|.++.
T Consensus 13 diGkniv~~~L~~-~GfeVidLG~~v~~e~~v~aa~~~~adiVglS~ 58 (128)
T cd02072 13 AVGNKILDHAFTE-AGFNVVNLGVLSPQEEFIDAAIETDADAILVSS 58 (128)
T ss_pred HHHHHHHHHHHHH-CCCEEEECCCCCCHHHHHHHHHHcCCCEEEEec
Confidence 5999999888774 689999999999999999999999999999864
No 376
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase. Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.
Probab=78.49 E-value=5.3 Score=47.02 Aligned_cols=40 Identities=23% Similarity=0.375 Sum_probs=32.5
Q ss_pred CCCeeEEEEecCChHhHHHHHHHHhCC--CceEEEEEeccCC
Q 013846 74 DGPKPISVLGSTGSIGTQTLDIVAEHE--DKFRVVALAAGSN 113 (435)
Q Consensus 74 ~~~k~I~IlGSTGSIG~qtLdVi~~~p--d~f~VvaLaa~~N 113 (435)
..+++|.|.|+||+||...++-+.+.+ ..++|+++.-..+
T Consensus 969 ~~~~~VlvTGatGflG~~l~~~Ll~~~~~~~~~V~~l~R~~~ 1010 (1389)
T TIGR03443 969 STPITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRAKS 1010 (1389)
T ss_pred CCCceEEEeCCccccHHHHHHHHHhcCCCCCcEEEEEECcCC
Confidence 345789999999999999998877766 5789999875433
No 377
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=78.48 E-value=11 Score=39.99 Aligned_cols=41 Identities=29% Similarity=0.450 Sum_probs=31.4
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHH
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQ 120 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q 120 (435)
.|+|.|.|+||.||.....-+.+. ..+|++++ +|.+.+.+.
T Consensus 178 gK~VLITGASgGIG~aLA~~La~~--G~~Vi~l~--r~~~~l~~~ 218 (406)
T PRK07424 178 GKTVAVTGASGTLGQALLKELHQQ--GAKVVALT--SNSDKITLE 218 (406)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHH
Confidence 478999999999999999888775 57888775 344555443
No 378
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=78.37 E-value=19 Score=36.30 Aligned_cols=132 Identities=16% Similarity=0.162 Sum_probs=77.6
Q ss_pred CCCeeEEEEecCChHhHHHHHHHHhCCC---ceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcc-----hHHHHHHHHh
Q 013846 74 DGPKPISVLGSTGSIGTQTLDIVAEHED---KFRVVALAAGSNITLLADQVKRFKPQVVAVRNES-----LLDEIKEALA 145 (435)
Q Consensus 74 ~~~k~I~IlGSTGSIG~qtLdVi~~~pd---~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~-----~~~~l~~~l~ 145 (435)
+.++||+||.|.+ |++.-+++.+..+ +.+|+++.+++ ..+...+++++-.+..+.... ...++-+.+.
T Consensus 82 ~~~~ki~vl~Sg~--g~nl~~l~~~~~~g~l~~~i~~visn~--~~~~~~A~~~gIp~~~~~~~~~~~~~~e~~~~~~l~ 157 (280)
T TIGR00655 82 DKLKRVAILVSKE--DHCLGDLLWRWYSGELDAEIALVISNH--EDLRSLVERFGIPFHYIPATKDNRVEHEKRQLELLK 157 (280)
T ss_pred CCCcEEEEEEcCC--ChhHHHHHHHHHcCCCCcEEEEEEEcC--hhHHHHHHHhCCCEEEcCCCCcchhhhHHHHHHHHH
Confidence 4578999999987 8998888887543 36888876544 344456888888787764311 1122333333
Q ss_pred cCCCCceEEechhHHH--HHhcCCCCCEEEEe----cccccCcHHHHHHHHcCCc-----eeecccceeeeccccchH
Q 013846 146 NVEEKPEILAGEQGVI--EAARHPDAVTVVTG----IVGCAGLKPTVAAIEAGKD-----IALANKETLIAGGPFVLP 212 (435)
Q Consensus 146 ~~~~~~~v~~G~egl~--~l~~~~~~D~Vv~A----IvG~aGL~pt~~Ai~~gK~-----iaLANKESLV~aG~lv~~ 212 (435)
..+.+.-|+.|---+. ++.+... --++|- +--+-|..|...|+++|.+ +=..|.| +-.|+++.+
T Consensus 158 ~~~~Dlivlagym~il~~~~l~~~~-~~iINiHpSLLP~f~G~~p~~~ai~~G~k~tG~TvH~V~e~--lD~GpII~Q 232 (280)
T TIGR00655 158 QYQVDLVVLAKYMQILSPDFVKRYP-NKIINIHHSFLPAFIGANPYQRAYERGVKIIGATAHYVTEE--LDEGPIIEQ 232 (280)
T ss_pred HhCCCEEEEeCchhhCCHHHHhhcc-CCEEEecCCcCCCCCCcCHHHHHHHcCCCeEEEEEEEEcCC--CcCCCeEEE
Confidence 3333444555432211 1111111 123332 3457888999999999963 4455554 356787755
No 379
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=78.20 E-value=17 Score=34.74 Aligned_cols=65 Identities=12% Similarity=0.056 Sum_probs=39.9
Q ss_pred eeEEEEec--CChHhHHHHHHHHhCCCceEEEEEec-cCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHH
Q 013846 77 KPISVLGS--TGSIGTQTLDIVAEHEDKFRVVALAA-GSNITLLADQVKRFKPQVVAVRNESLLDEIKEA 143 (435)
Q Consensus 77 k~I~IlGS--TGSIG~qtLdVi~~~pd~f~VvaLaa-~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~ 143 (435)
|.+.|.|+ |+-||.++..-+.+. .++|+...- .++.+.+.+..+++....+...|-...+.+++.
T Consensus 7 k~vlItGas~~~GIG~a~a~~l~~~--G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~ 74 (260)
T PRK06997 7 KRILITGLLSNRSIAYGIAKACKRE--GAELAFTYVGDRFKDRITEFAAEFGSDLVFPCDVASDEQIDAL 74 (260)
T ss_pred cEEEEeCCCCCCcHHHHHHHHHHHC--CCeEEEEccchHHHHHHHHHHHhcCCcceeeccCCCHHHHHHH
Confidence 68999996 567999998888775 466655421 245566666666654333333444444444443
No 380
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=78.14 E-value=25 Score=33.54 Aligned_cols=90 Identities=24% Similarity=0.319 Sum_probs=55.0
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEEec
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~~G 156 (435)
.+|.|.|++|++|..++.+.+.. ..+|+..+. +-+++ +.++++..+.+.-.++. ...+
T Consensus 148 ~~vlI~g~~g~vg~~~~~~a~~~--g~~v~~~~~--~~~~~-~~~~~~g~~~~~~~~~~-~~~~---------------- 205 (325)
T cd05280 148 GPVLVTGATGGVGSIAVAILAKL--GYTVVALTG--KEEQA-DYLKSLGASEVLDREDL-LDES---------------- 205 (325)
T ss_pred CEEEEECCccHHHHHHHHHHHHc--CCEEEEEeC--CHHHH-HHHHhcCCcEEEcchhH-HHHH----------------
Confidence 47999999999999999999876 344665543 33443 34466766555322110 0011
Q ss_pred hhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCC
Q 013846 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGK 193 (435)
Q Consensus 157 ~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK 193 (435)
.+......+|.|++...| ..+...+.++..+-
T Consensus 206 ----~~~~~~~~~d~vi~~~~~-~~~~~~~~~l~~~g 237 (325)
T cd05280 206 ----KKPLLKARWAGAIDTVGG-DVLANLLKQTKYGG 237 (325)
T ss_pred ----HHHhcCCCccEEEECCch-HHHHHHHHhhcCCC
Confidence 111122348999988666 67777777776543
No 381
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=78.11 E-value=19 Score=34.30 Aligned_cols=66 Identities=14% Similarity=0.033 Sum_probs=37.2
Q ss_pred CeeEEEEecC--ChHhHHHHHHHHhCCCceEEEEEec----cCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHH
Q 013846 76 PKPISVLGST--GSIGTQTLDIVAEHEDKFRVVALAA----GSNITLLADQVKRFKPQVVAVRNESLLDEIKEA 143 (435)
Q Consensus 76 ~k~I~IlGST--GSIG~qtLdVi~~~pd~f~VvaLaa----~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~ 143 (435)
.|.+.|.|+| +-||..+..-+.+. .++|+...- .++.+.+.+...+..+-.+...|-...+.+++.
T Consensus 6 ~k~~lItGas~~~GIG~aia~~la~~--G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~ 77 (258)
T PRK07370 6 GKKALVTGIANNRSIAWGIAQQLHAA--GAELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQDDAQIEET 77 (258)
T ss_pred CcEEEEeCCCCCCchHHHHHHHHHHC--CCEEEEEecCcccchHHHHHHHHHhccCcceEeecCcCCHHHHHHH
Confidence 3689999987 67999999888875 556654321 233344443333333222333454444444443
No 382
>PLN02256 arogenate dehydrogenase
Probab=77.87 E-value=26 Score=35.46 Aligned_cols=34 Identities=18% Similarity=0.273 Sum_probs=26.5
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEecc
Q 013846 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG 111 (435)
Q Consensus 75 ~~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~ 111 (435)
.+++|+|+| .|.||.+...-+++. .++|++..-.
T Consensus 35 ~~~kI~IIG-~G~mG~slA~~L~~~--G~~V~~~d~~ 68 (304)
T PLN02256 35 RKLKIGIVG-FGNFGQFLAKTFVKQ--GHTVLATSRS 68 (304)
T ss_pred CCCEEEEEe-eCHHHHHHHHHHHhC--CCEEEEEECc
Confidence 445799999 799999999988876 3678876533
No 383
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=77.85 E-value=14 Score=41.16 Aligned_cols=45 Identities=22% Similarity=0.231 Sum_probs=33.4
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f 124 (435)
.|++.|.|+||.||..+..-+.+. .++|+.+. +|.+.+.+...++
T Consensus 414 gkvvLVTGasggIG~aiA~~La~~--Ga~Vvi~~--r~~~~~~~~~~~l 458 (676)
T TIGR02632 414 RRVAFVTGGAGGIGRETARRLAAE--GAHVVLAD--LNLEAAEAVAAEI 458 (676)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHhC--CCEEEEEe--CCHHHHHHHHHHH
Confidence 478999999999999999988876 56777664 4555555544443
No 384
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=77.75 E-value=10 Score=39.33 Aligned_cols=113 Identities=17% Similarity=0.197 Sum_probs=68.2
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEec-cCCHHHHHHHHH------hhCCCEEEEcCcchHHHHHHHHhcCC
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA-GSNITLLADQVK------RFKPQVVAVRNESLLDEIKEALANVE 148 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa-~~N~~~L~~q~~------~f~P~~v~v~~e~~~~~l~~~l~~~~ 148 (435)
+.||+|.|. |-||+..+..+.++| +++++|+.- ....+.|+-+.+ +|...-|.+.+... +.-.+
T Consensus 5 ~lrVaI~G~-GrIGr~~~r~~~~~~-~velvaI~D~~~~~~~~a~ll~yDs~~g~~~~~~v~~~~g~~-------l~~~g 75 (338)
T PLN02358 5 KIRIGINGF-GRIGRLVARVVLQRD-DVELVAVNDPFITTEYMTYMFKYDSVHGQWKHHELKVKDDKT-------LLFGE 75 (338)
T ss_pred ceEEEEEee-cHHHHHHHHHHhhCC-CcEEEEEeCCCCCHHHHHHhheeecCCCCcCCCeEEECCCCE-------EEECC
Confidence 458999995 899999999988875 589999875 567777766554 23211232211110 00001
Q ss_pred CCceEEechhHHHHH-hcCCCCCEEEEecccccCcHHHHHHHHcC-Cceeec
Q 013846 149 EKPEILAGEQGVIEA-ARHPDAVTVVTGIVGCAGLKPTVAAIEAG-KDIALA 198 (435)
Q Consensus 149 ~~~~v~~G~egl~~l-~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~g-K~iaLA 198 (435)
..++++.- +...++ -...++|+|+.+.-.+.--+-.-.++++| |+|-+.
T Consensus 76 ~~i~v~~~-~~p~~~~w~~~gvDiVie~tG~~~s~~~a~~hl~aGak~ViiS 126 (338)
T PLN02358 76 KPVTVFGI-RNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVIS 126 (338)
T ss_pred EEEEEEEc-CCcccCcccccCCCEEEEcccchhhHHHHHHHHHCCCEEEEeC
Confidence 12333321 111122 11247999999877777777677888999 566555
No 385
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=77.72 E-value=14 Score=35.05 Aligned_cols=64 Identities=19% Similarity=0.241 Sum_probs=44.9
Q ss_pred CCCCCCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEecc--------------CCHHHHHHHHHhhCCCEEEEcCcc
Q 013846 71 KTWDGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG--------------SNITLLADQVKRFKPQVVAVRNES 135 (435)
Q Consensus 71 ~~~~~~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~--------------~N~~~L~~q~~~f~P~~v~v~~e~ 135 (435)
..++..++|+|+|+ |.+|....+........|+++|+... ...+.+.+.+++.+++.|.++-+.
T Consensus 79 l~~~~~~rV~IIGa-G~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i~g~~v~~~~~l~~li~~~~iD~ViIa~P~ 156 (213)
T PRK05472 79 LGLDRTWNVALVGA-GNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKIGGIPVYHIDELEEVVKENDIEIGILTVPA 156 (213)
T ss_pred hCCCCCcEEEEECC-CHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEeCCeEEcCHHHHHHHHHHCCCCEEEEeCCc
Confidence 44556678999995 78899887764432346999998532 134667778888888888886543
No 386
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=77.72 E-value=22 Score=38.01 Aligned_cols=105 Identities=14% Similarity=0.140 Sum_probs=61.5
Q ss_pred CCCCeeEEEEecCChHhHHH--HHHHHhCCCceEEEEEeccC-------------CHHHHHHHHHhhCCCEEEE-cCcch
Q 013846 73 WDGPKPISVLGSTGSIGTQT--LDIVAEHEDKFRVVALAAGS-------------NITLLADQVKRFKPQVVAV-RNESL 136 (435)
Q Consensus 73 ~~~~k~I~IlGSTGSIG~qt--LdVi~~~pd~f~VvaLaa~~-------------N~~~L~~q~~~f~P~~v~v-~~e~~ 136 (435)
-+++|++.|.|+++.||..+ -.-++ ....|+++...+ |.+.+.+.+++...+...+ .|-..
T Consensus 38 ~~ggK~aLVTGaSsGIGlA~~IA~al~---~GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~G~~a~~i~~DVss 114 (398)
T PRK13656 38 ANGPKKVLVIGASSGYGLASRIAAAFG---AGADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAAGLYAKSINGDAFS 114 (398)
T ss_pred CCCCCEEEEECCCchHhHHHHHHHHHH---cCCeEEEEecCcchhhhcccccccchHHHHHHHHHhcCCceEEEEcCCCC
Confidence 37789999999999999982 22332 367788876422 4455666777665443332 34433
Q ss_pred HHHHHHHHhcCCCCceEEechhHHHHHhcCCCCCEEEEecccc------------cCcHHHHHHHHcCCcee
Q 013846 137 LDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGC------------AGLKPTVAAIEAGKDIA 196 (435)
Q Consensus 137 ~~~l~~~l~~~~~~~~v~~G~egl~~l~~~~~~D~Vv~AIvG~------------aGL~pt~~Ai~~gK~ia 196 (435)
.+.+.+.+. .+.+ ....+|++|+.+.-. +-|+|+...+. |+.+-
T Consensus 115 ~E~v~~lie-------------~I~e--~~G~IDiLVnSaA~~~r~~p~~g~~~~s~lKpi~~~~~-~~~~d 170 (398)
T PRK13656 115 DEIKQKVIE-------------LIKQ--DLGQVDLVVYSLASPRRTDPKTGEVYRSVLKPIGEPYT-GKTLD 170 (398)
T ss_pred HHHHHHHHH-------------HHHH--hcCCCCEEEECCccCCCCCcccCceeeccccccccccc-CCccc
Confidence 333333221 1111 124689999887543 25788777754 44443
No 387
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=77.52 E-value=21 Score=32.67 Aligned_cols=93 Identities=17% Similarity=0.201 Sum_probs=53.6
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEEe
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~~ 155 (435)
..+|.|.|++| +|..+..+.+... .+|++++.. -+. .+.++++..+.+.-..... .
T Consensus 135 ~~~vli~g~~~-~G~~~~~~a~~~g--~~v~~~~~~--~~~-~~~~~~~g~~~~~~~~~~~---~--------------- 190 (271)
T cd05188 135 GDTVLVLGAGG-VGLLAAQLAKAAG--ARVIVTDRS--DEK-LELAKELGADHVIDYKEED---L--------------- 190 (271)
T ss_pred CCEEEEECCCH-HHHHHHHHHHHcC--CeEEEEcCC--HHH-HHHHHHhCCceeccCCcCC---H---------------
Confidence 45899999988 9999999998863 667776532 222 2334555433332111100 0
Q ss_pred chhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCc
Q 013846 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD 194 (435)
Q Consensus 156 G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ 194 (435)
.+.+. ......+|++++.+.+...+...+.+++.+-+
T Consensus 191 -~~~~~-~~~~~~~d~vi~~~~~~~~~~~~~~~l~~~G~ 227 (271)
T cd05188 191 -EEELR-LTGGGGADVVIDAVGGPETLAQALRLLRPGGR 227 (271)
T ss_pred -HHHHH-HhcCCCCCEEEECCCCHHHHHHHHHhcccCCE
Confidence 01111 22334699999987664556666666655443
No 388
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=77.46 E-value=16 Score=36.66 Aligned_cols=44 Identities=14% Similarity=0.124 Sum_probs=31.3
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhC
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFK 125 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~ 125 (435)
.+++.|+|. |-+|.++...+++.. .+|... .++.+. .++++++.
T Consensus 152 g~kvlViG~-G~iG~~~a~~L~~~G--a~V~v~--~r~~~~-~~~~~~~G 195 (296)
T PRK08306 152 GSNVLVLGF-GRTGMTLARTLKALG--ANVTVG--ARKSAH-LARITEMG 195 (296)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCC--CEEEEE--ECCHHH-HHHHHHcC
Confidence 579999996 889999999999874 456554 344444 34555554
No 389
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=77.46 E-value=21 Score=34.87 Aligned_cols=96 Identities=21% Similarity=0.255 Sum_probs=58.1
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCc-chHHHHHHHHhcCCCCceEE
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNE-SLLDEIKEALANVEEKPEIL 154 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e-~~~~~l~~~l~~~~~~~~v~ 154 (435)
..+|.|.| +|++|..++.+.+.. .++|+.+...++-+++ +.++++..+.+ -..+ +..+.
T Consensus 165 g~~vlI~g-~g~~g~~~~~la~~~--G~~v~~~~~~~~~~~~-~~~~~~g~~~~-~~~~~~~~~~--------------- 224 (306)
T cd08258 165 GDTVVVFG-PGPIGLLAAQVAKLQ--GATVVVVGTEKDEVRL-DVAKELGADAV-NGGEEDLAEL--------------- 224 (306)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHc--CCEEEEECCCCCHHHH-HHHHHhCCccc-CCCcCCHHHH---------------
Confidence 35788855 799999999999987 4667665445554444 45566664433 1111 11111
Q ss_pred echhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCcee
Q 013846 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (435)
Q Consensus 155 ~G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ia 196 (435)
+.++.....+|++++.+.+-..+...+..++.+-++.
T Consensus 225 -----l~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~G~~v 261 (306)
T cd08258 225 -----VNEITDGDGADVVIECSGAVPALEQALELLRKGGRIV 261 (306)
T ss_pred -----HHHHcCCCCCCEEEECCCChHHHHHHHHHhhcCCEEE
Confidence 2222223458999998655566777777777665544
No 390
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=77.31 E-value=19 Score=33.77 Aligned_cols=92 Identities=15% Similarity=0.212 Sum_probs=53.3
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEEe
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~~ 155 (435)
..+|.|.|++|.+|..+..+.+.. ..+|+.++... +. .+.++++..+.+.-..+.. +
T Consensus 140 ~~~vli~g~~~~~g~~~~~~a~~~--g~~v~~~~~~~--~~-~~~~~~~g~~~~~~~~~~~---~--------------- 196 (323)
T cd08241 140 GETVLVLGAAGGVGLAAVQLAKAL--GARVIAAASSE--EK-LALARALGADHVIDYRDPD---L--------------- 196 (323)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHh--CCEEEEEeCCH--HH-HHHHHHcCCceeeecCCcc---H---------------
Confidence 368999999999999999999886 45566654332 22 2233445433322211111 1
Q ss_pred chhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcC
Q 013846 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAG 192 (435)
Q Consensus 156 G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~g 192 (435)
.+.+.++.....+|.+++.+.| ..+...+.+++.+
T Consensus 197 -~~~i~~~~~~~~~d~v~~~~g~-~~~~~~~~~~~~~ 231 (323)
T cd08241 197 -RERVKALTGGRGVDVVYDPVGG-DVFEASLRSLAWG 231 (323)
T ss_pred -HHHHHHHcCCCCcEEEEECccH-HHHHHHHHhhccC
Confidence 1222233333458999987665 6666666666544
No 391
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=77.22 E-value=31 Score=33.36 Aligned_cols=96 Identities=14% Similarity=0.183 Sum_probs=59.3
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEEe
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~~ 155 (435)
-.+|.|.|++|++|..++.+.+.. ..++|++.+... ++ .++++++..+.+.-.++. +.+.
T Consensus 149 g~~vlV~ga~g~vg~~~~~~ak~~-~G~~vi~~~~~~--~~-~~~l~~~g~~~~~~~~~~----~~~~------------ 208 (336)
T TIGR02817 149 KRALLIIGGAGGVGSILIQLARQL-TGLTVIATASRP--ES-QEWVLELGAHHVIDHSKP----LKAQ------------ 208 (336)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHh-CCCEEEEEcCcH--HH-HHHHHHcCCCEEEECCCC----HHHH------------
Confidence 358999999999999999998863 146777765332 33 344567777665532221 1211
Q ss_pred chhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCcee
Q 013846 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (435)
Q Consensus 156 G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ia 196 (435)
+.++ ....+|+|++.+.+-..+...+..+..+-++.
T Consensus 209 ----i~~~-~~~~vd~vl~~~~~~~~~~~~~~~l~~~G~~v 244 (336)
T TIGR02817 209 ----LEKL-GLEAVSYVFSLTHTDQHFKEIVELLAPQGRFA 244 (336)
T ss_pred ----HHHh-cCCCCCEEEEcCCcHHHHHHHHHHhccCCEEE
Confidence 1221 12358899987655555667777776655544
No 392
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=76.93 E-value=6.8 Score=38.95 Aligned_cols=77 Identities=12% Similarity=0.048 Sum_probs=49.4
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEEech
Q 013846 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGE 157 (435)
Q Consensus 78 ~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~~G~ 157 (435)
+|.|+|+||- |.+..+.+.+. .++|++.++...-..+.. +.....|... . .+.
T Consensus 2 ~ILvlGGT~e-gr~la~~L~~~--g~~v~~s~~t~~~~~~~~---~~g~~~v~~g--------------------~-l~~ 54 (256)
T TIGR00715 2 TVLLMGGTVD-SRAIAKGLIAQ--GIEILVTVTTSEGKHLYP---IHQALTVHTG--------------------A-LDP 54 (256)
T ss_pred eEEEEechHH-HHHHHHHHHhC--CCeEEEEEccCCcccccc---ccCCceEEEC--------------------C-CCH
Confidence 6999999998 99999988875 488888877654332221 1111222211 0 133
Q ss_pred hHHHHHhcCCCCCEEEEecccccC
Q 013846 158 QGVIEAARHPDAVTVVTGIVGCAG 181 (435)
Q Consensus 158 egl~~l~~~~~~D~Vv~AIvG~aG 181 (435)
+++.++.+..++|.||+|.--+|-
T Consensus 55 ~~l~~~l~~~~i~~VIDAtHPfA~ 78 (256)
T TIGR00715 55 QELREFLKRHSIDILVDATHPFAA 78 (256)
T ss_pred HHHHHHHHhcCCCEEEEcCCHHHH
Confidence 556666666678888888777664
No 393
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=76.91 E-value=25 Score=36.81 Aligned_cols=113 Identities=19% Similarity=0.165 Sum_probs=74.8
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh--CCCEEEEc-CcchHHHHHHHHhcCCCCceE
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF--KPQVVAVR-NESLLDEIKEALANVEEKPEI 153 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f--~P~~v~v~-~e~~~~~l~~~l~~~~~~~~v 153 (435)
.||+|=| -|-||+..++.+.+.+++++|||+.--...+.++.+.+.- ...|..-. .++. .+.-.+..+++
T Consensus 2 ikV~ING-fGrIGR~v~ra~~~~~~dieVVaInd~t~~~~~A~LlkyDs~hg~f~~~v~~~~~------~~~v~g~~I~v 74 (335)
T COG0057 2 IKVAING-FGRIGRLVARAALERDGDIEVVAINDLTDPDYLAHLLKYDSVHGRFDGEVEVKDD------ALVVNGKGIKV 74 (335)
T ss_pred cEEEEec-CcHHHHHHHHHHHhCCCCeEEEEEecCCCHHHHHHHHhhcccCCCCCCcccccCC------eEEECCceEEE
Confidence 4688776 7999999999999987789999998877788888888754 23333211 0110 00001234666
Q ss_pred Eechh-HHHHHhcCCCCCEEEEecccccCcHHHHHHHHcC--Cceee
Q 013846 154 LAGEQ-GVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAG--KDIAL 197 (435)
Q Consensus 154 ~~G~e-gl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~g--K~iaL 197 (435)
+.-.+ ....-.. ..+|+||.+--.+.|-+-.-.-+++| |+|.+
T Consensus 75 ~~~~~p~~l~w~d-~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~i 120 (335)
T COG0057 75 LAERDPANLPWAD-LGVDIVVECTGKFTGREKAEKHLKAGGAKKVLI 120 (335)
T ss_pred EecCChHHCCccc-cCccEEEECCCCccchhhHHHHHHhcCCCEEEE
Confidence 55544 3433443 35889999988888877766678886 66655
No 394
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=76.85 E-value=16 Score=37.46 Aligned_cols=71 Identities=18% Similarity=0.259 Sum_probs=42.3
Q ss_pred CCeeEEEEecCChHhHHHHH--HHHhCCCceEEEEE-----------------ec--------cCCHHHHHHHHHhhCCC
Q 013846 75 GPKPISVLGSTGSIGTQTLD--IVAEHEDKFRVVAL-----------------AA--------GSNITLLADQVKRFKPQ 127 (435)
Q Consensus 75 ~~k~I~IlGSTGSIG~qtLd--Vi~~~pd~f~VvaL-----------------aa--------~~N~~~L~~q~~~f~P~ 127 (435)
..+.|.|.|.||| |+.|+= +++..|+.-+|+.+ -. .-+.+.|.+.+.+.+|+
T Consensus 159 ~~~nili~G~tgS-GKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD 237 (332)
T PRK13900 159 SKKNIIISGGTST-GKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPD 237 (332)
T ss_pred cCCcEEEECCCCC-CHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCC
Confidence 3579999999999 777762 33444543333222 11 12456677788888888
Q ss_pred EEEEc---CcchHHHHHHHHhc
Q 013846 128 VVAVR---NESLLDEIKEALAN 146 (435)
Q Consensus 128 ~v~v~---~e~~~~~l~~~l~~ 146 (435)
++.+. +.+.+..++....+
T Consensus 238 ~IivGEiR~~ea~~~l~a~~tG 259 (332)
T PRK13900 238 RIIVGELRGAEAFSFLRAINTG 259 (332)
T ss_pred eEEEEecCCHHHHHHHHHHHcC
Confidence 88874 33344445544433
No 395
>PRK05599 hypothetical protein; Provisional
Probab=76.81 E-value=24 Score=33.30 Aligned_cols=43 Identities=19% Similarity=0.187 Sum_probs=30.8
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f 124 (435)
|.+.|.|+|+-||.+...-+.+ ..+|+.++ +|.+.+.+.+++.
T Consensus 1 ~~vlItGas~GIG~aia~~l~~---g~~Vil~~--r~~~~~~~~~~~l 43 (246)
T PRK05599 1 MSILILGGTSDIAGEIATLLCH---GEDVVLAA--RRPEAAQGLASDL 43 (246)
T ss_pred CeEEEEeCccHHHHHHHHHHhC---CCEEEEEe--CCHHHHHHHHHHH
Confidence 4589999999999999887763 46776543 5666666555544
No 396
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=76.77 E-value=2.2 Score=43.41 Aligned_cols=43 Identities=21% Similarity=0.325 Sum_probs=30.9
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCC-----CceEEEEEeccCCHHHHH
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHE-----DKFRVVALAAGSNITLLA 118 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~p-----d~f~VvaLaa~~N~~~L~ 118 (435)
|-||+|.|+||+||.+...-+...+ +..+|+.+--..+.+++.
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~ 49 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALE 49 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCcccccc
Confidence 5689999999999999888776643 234788876554544343
No 397
>PRK08118 topology modulation protein; Reviewed
Probab=76.75 E-value=1.6 Score=40.00 Aligned_cols=19 Identities=47% Similarity=0.600 Sum_probs=16.7
Q ss_pred CeeEEEEecCChHhHHHHHH
Q 013846 76 PKPISVLGSTGSIGTQTLDI 95 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdV 95 (435)
|+||.|+|..|| |++||.-
T Consensus 1 m~rI~I~G~~Gs-GKSTlak 19 (167)
T PRK08118 1 MKKIILIGSGGS-GKSTLAR 19 (167)
T ss_pred CcEEEEECCCCC-CHHHHHH
Confidence 679999999999 9999754
No 398
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=76.73 E-value=21 Score=36.85 Aligned_cols=95 Identities=17% Similarity=0.203 Sum_probs=54.7
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCc-chHHHHHHHHhcCCCCceEEe
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNE-SLLDEIKEALANVEEKPEILA 155 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e-~~~~~l~~~l~~~~~~~~v~~ 155 (435)
++|.|.| +|.||..++.+.+.. ..+++.. ...+-+. .+.++++..+.+....+ +..+.+
T Consensus 187 ~~VlV~G-~G~iG~~aiqlAk~~--Ga~~vi~-~d~~~~r-~~~a~~~Ga~~v~~~~~~~~~~~v--------------- 246 (393)
T TIGR02819 187 STVYIAG-AGPVGLAAAASAQLL--GAAVVIV-GDLNPAR-LAQARSFGCETVDLSKDATLPEQI--------------- 246 (393)
T ss_pred CEEEEEC-CCHHHHHHHHHHHHc--CCceEEE-eCCCHHH-HHHHHHcCCeEEecCCcccHHHHH---------------
Confidence 5788855 599999999998876 4554443 2334444 35677787653221111 111112
Q ss_pred chhHHHHHhcCCCCCEEEEecccc--------------cCcHHHHHHHHcCCcee
Q 013846 156 GEQGVIEAARHPDAVTVVTGIVGC--------------AGLKPTVAAIEAGKDIA 196 (435)
Q Consensus 156 G~egl~~l~~~~~~D~Vv~AIvG~--------------aGL~pt~~Ai~~gK~ia 196 (435)
.++.....+|+|++++.+- ..+.-.+..++.|-+|.
T Consensus 247 -----~~~~~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~ 296 (393)
T TIGR02819 247 -----EQILGEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIG 296 (393)
T ss_pred -----HHHcCCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEE
Confidence 2222223589999976543 25666777777776653
No 399
>PRK06217 hypothetical protein; Validated
Probab=76.62 E-value=1.6 Score=39.87 Aligned_cols=19 Identities=42% Similarity=0.593 Sum_probs=16.8
Q ss_pred CeeEEEEecCChHhHHHHHH
Q 013846 76 PKPISVLGSTGSIGTQTLDI 95 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdV 95 (435)
|++|+|.|.+|| |++|+--
T Consensus 1 ~~~I~i~G~~Gs-GKSTla~ 19 (183)
T PRK06217 1 MMRIHITGASGS-GTTTLGA 19 (183)
T ss_pred CeEEEEECCCCC-CHHHHHH
Confidence 578999999999 9999864
No 400
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=76.61 E-value=24 Score=34.05 Aligned_cols=63 Identities=11% Similarity=-0.021 Sum_probs=37.8
Q ss_pred eeEEEEecC--ChHhHHHHHHHHhCCCceEEEEEeccC--CHHHHHHHHHhhCCCEEEEcCcchHHHHHH
Q 013846 77 KPISVLGST--GSIGTQTLDIVAEHEDKFRVVALAAGS--NITLLADQVKRFKPQVVAVRNESLLDEIKE 142 (435)
Q Consensus 77 k~I~IlGST--GSIG~qtLdVi~~~pd~f~VvaLaa~~--N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~ 142 (435)
|.+.|.|++ +-||..+-+.+.+. .++|+ +++++ +.+.+.+.+++..-......|-...+.+++
T Consensus 11 k~~lItGas~~~GIG~aia~~la~~--G~~V~-l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~ 77 (272)
T PRK08159 11 KRGLILGVANNRSIAWGIAKACRAA--GAELA-FTYQGDALKKRVEPLAAELGAFVAGHCDVTDEASIDA 77 (272)
T ss_pred CEEEEECCCCCCcHHHHHHHHHHHC--CCEEE-EEcCchHHHHHHHHHHHhcCCceEEecCCCCHHHHHH
Confidence 789999997 66999999988875 56775 44432 235555555554322223344444444443
No 401
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=76.38 E-value=28 Score=33.01 Aligned_cols=63 Identities=8% Similarity=-0.014 Sum_probs=37.2
Q ss_pred eeEEEEecC--ChHhHHHHHHHHhCCCceEEEEEeccCC--HHHHHHHHHhhCCCEEEEcCcchHHHHHH
Q 013846 77 KPISVLGST--GSIGTQTLDIVAEHEDKFRVVALAAGSN--ITLLADQVKRFKPQVVAVRNESLLDEIKE 142 (435)
Q Consensus 77 k~I~IlGST--GSIG~qtLdVi~~~pd~f~VvaLaa~~N--~~~L~~q~~~f~P~~v~v~~e~~~~~l~~ 142 (435)
|.+.|.|++ +-||..+..-+.+. .++|+.. +++. .+.+.+.++++.-..+.-.|-...+.+++
T Consensus 11 k~~lItGas~g~GIG~a~a~~la~~--G~~v~l~-~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~ 77 (258)
T PRK07533 11 KRGLVVGIANEQSIAWGCARAFRAL--GAELAVT-YLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEA 77 (258)
T ss_pred CEEEEECCCCCCcHHHHHHHHHHHc--CCEEEEE-eCChhhHHHHHHHHHhhccceEEecCcCCHHHHHH
Confidence 789999988 48999999998875 4666543 3321 23345555555322223344444444444
No 402
>PRK07041 short chain dehydrogenase; Provisional
Probab=75.90 E-value=22 Score=32.48 Aligned_cols=41 Identities=22% Similarity=0.252 Sum_probs=29.7
Q ss_pred EEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh
Q 013846 80 SVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (435)
Q Consensus 80 ~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f 124 (435)
.|.|+||.||.+...-+.+. .++|+.++ ++.+.+.+...+.
T Consensus 1 lItGas~~iG~~~a~~l~~~--G~~v~~~~--r~~~~~~~~~~~~ 41 (230)
T PRK07041 1 LVVGGSSGIGLALARAFAAE--GARVTIAS--RSRDRLAAAARAL 41 (230)
T ss_pred CeecCCChHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHHHH
Confidence 38999999999999988876 56776653 4556665555444
No 403
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=75.76 E-value=30 Score=34.93 Aligned_cols=92 Identities=15% Similarity=0.183 Sum_probs=56.0
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCce-EEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEE
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKF-RVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f-~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~ 154 (435)
-.+|.|.|+ |.||..++.+.+.. .. +|++.. .+-++ .+.++++..+.+.-..+.. ..+.
T Consensus 186 g~~VlV~G~-G~iG~~a~q~Ak~~--G~~~Vi~~~--~~~~~-~~~a~~~Ga~~~i~~~~~~-~~~~------------- 245 (368)
T TIGR02818 186 GDTVAVFGL-GGIGLSVIQGARMA--KASRIIAID--INPAK-FELAKKLGATDCVNPNDYD-KPIQ------------- 245 (368)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHc--CCCeEEEEc--CCHHH-HHHHHHhCCCeEEcccccc-hhHH-------------
Confidence 358999996 99999999999876 34 466553 33344 3455778776544221100 0111
Q ss_pred echhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHc
Q 013846 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEA 191 (435)
Q Consensus 155 ~G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~ 191 (435)
+.+.++... .+|+|++++.+...+...+..++.
T Consensus 246 ---~~v~~~~~~-g~d~vid~~G~~~~~~~~~~~~~~ 278 (368)
T TIGR02818 246 ---EVIVEITDG-GVDYSFECIGNVNVMRAALECCHK 278 (368)
T ss_pred ---HHHHHHhCC-CCCEEEECCCCHHHHHHHHHHhhc
Confidence 122233332 589999997665667777777755
No 404
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=75.66 E-value=30 Score=30.03 Aligned_cols=45 Identities=9% Similarity=0.141 Sum_probs=38.6
Q ss_pred HhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcC
Q 013846 88 IGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRN 133 (435)
Q Consensus 88 IG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~ 133 (435)
+|.......-+. ..|+|+-|....-.+.+.+.+.+.+|++|+++.
T Consensus 14 lG~~~~~~~l~~-~G~~vi~lG~~vp~e~~~~~a~~~~~d~V~iS~ 58 (122)
T cd02071 14 RGAKVIARALRD-AGFEVIYTGLRQTPEEIVEAAIQEDVDVIGLSS 58 (122)
T ss_pred HHHHHHHHHHHH-CCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcc
Confidence 777777766553 589999999999999999999999999999964
No 405
>KOG2733 consensus Uncharacterized membrane protein [Function unknown]
Probab=75.63 E-value=3.9 Score=43.45 Aligned_cols=46 Identities=20% Similarity=0.386 Sum_probs=35.0
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEE-eccCCHHHHHHHHHhh
Q 013846 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVAL-AAGSNITLLADQVKRF 124 (435)
Q Consensus 78 ~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaL-aa~~N~~~L~~q~~~f 124 (435)
-++|+||||+-|+-+.+-+-+.. .|+-..+ .||+|.++|.+-.++-
T Consensus 7 DvVIyGASGfTG~yivee~v~~~-~~~~~slavAGRn~~KL~~vL~~~ 53 (423)
T KOG2733|consen 7 DVVIYGASGFTGKYIVEEAVSSQ-VFEGLSLAVAGRNEKKLQEVLEKV 53 (423)
T ss_pred eEEEEccccccceeeHHHHhhhh-cccCceEEEecCCHHHHHHHHHHH
Confidence 58999999999999888766532 4555555 3689999998776654
No 406
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=75.59 E-value=21 Score=34.57 Aligned_cols=89 Identities=18% Similarity=0.300 Sum_probs=54.4
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEEe
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~~ 155 (435)
..+|.|.|++|++|..++.+.++. .++|++++. +-+.+. .+++| .+.+. +.. .+.+
T Consensus 163 ~~~vlI~g~~g~~g~~~~~la~~~--g~~vi~~~~--~~~~~~-~~~~~-~~~~~--~~~---~~~~------------- 218 (334)
T PRK13771 163 GETVLVTGAGGGVGIHAIQVAKAL--GAKVIAVTS--SESKAK-IVSKY-ADYVI--VGS---KFSE------------- 218 (334)
T ss_pred CCEEEEECCCccHHHHHHHHHHHc--CCEEEEEeC--CHHHHH-HHHHH-HHHhc--Cch---hHHH-------------
Confidence 458999999999999999999987 567766654 333332 23444 22211 110 1111
Q ss_pred chhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCce
Q 013846 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195 (435)
Q Consensus 156 G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~i 195 (435)
.+.++ ..+|++++...| ..+...+.+++.+-++
T Consensus 219 ---~v~~~---~~~d~~ld~~g~-~~~~~~~~~l~~~G~~ 251 (334)
T PRK13771 219 ---EVKKI---GGADIVIETVGT-PTLEESLRSLNMGGKI 251 (334)
T ss_pred ---HHHhc---CCCcEEEEcCCh-HHHHHHHHHHhcCCEE
Confidence 11111 258999998666 5677788888776543
No 407
>PRK07578 short chain dehydrogenase; Provisional
Probab=75.57 E-value=10 Score=34.16 Aligned_cols=29 Identities=24% Similarity=0.520 Sum_probs=24.7
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 013846 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (435)
Q Consensus 78 ~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLa 109 (435)
++.|.|+||.||....+.+.+. ++|++++
T Consensus 2 ~vlItGas~giG~~la~~l~~~---~~vi~~~ 30 (199)
T PRK07578 2 KILVIGASGTIGRAVVAELSKR---HEVITAG 30 (199)
T ss_pred eEEEEcCCcHHHHHHHHHHHhc---CcEEEEe
Confidence 6999999999999999988875 6677654
No 408
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=75.46 E-value=23 Score=32.23 Aligned_cols=53 Identities=26% Similarity=0.329 Sum_probs=45.0
Q ss_pred EEEecCC----hHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcC
Q 013846 80 SVLGSTG----SIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRN 133 (435)
Q Consensus 80 ~IlGSTG----SIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~ 133 (435)
+|+|..| .||...+..+-+. ..|+|+=|-.....+++.+.+++.+|+.|.++.
T Consensus 4 vvigtv~~D~HdiGk~iv~~~l~~-~GfeVi~LG~~v~~e~~v~aa~~~~adiVglS~ 60 (134)
T TIGR01501 4 IVLGVIGSDCHAVGNKILDHAFTN-AGFNVVNLGVLSPQEEFIKAAIETKADAILVSS 60 (134)
T ss_pred EEEEEecCChhhHhHHHHHHHHHH-CCCEEEECCCCCCHHHHHHHHHHcCCCEEEEec
Confidence 4455555 5999988887775 689999999999999999999999999999864
No 409
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=75.37 E-value=20 Score=34.18 Aligned_cols=84 Identities=15% Similarity=0.084 Sum_probs=48.1
Q ss_pred CeeEEEEec--CChHhHHHHHHHHhCCCceEEEEEec-cCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCce
Q 013846 76 PKPISVLGS--TGSIGTQTLDIVAEHEDKFRVVALAA-GSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPE 152 (435)
Q Consensus 76 ~k~I~IlGS--TGSIG~qtLdVi~~~pd~f~VvaLaa-~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~ 152 (435)
.|.+.|.|+ ++-||..+..-+.+. .++|+...- .++.+.+.+..++.........|-...+.+++.+.
T Consensus 6 ~k~~lITGa~~~~GIG~a~a~~l~~~--G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~------- 76 (261)
T PRK08690 6 GKKILITGMISERSIAYGIAKACREQ--GAELAFTYVVDKLEERVRKMAAELDSELVFRCDVASDDEINQVFA------- 76 (261)
T ss_pred CcEEEEECCCCCCcHHHHHHHHHHHC--CCEEEEEcCcHHHHHHHHHHHhccCCceEEECCCCCHHHHHHHHH-------
Confidence 368999996 567999998888775 566665321 23334555555554433333345444444544331
Q ss_pred EEechhHHHHHhcCCCCCEEEEec
Q 013846 153 ILAGEQGVIEAARHPDAVTVVTGI 176 (435)
Q Consensus 153 v~~G~egl~~l~~~~~~D~Vv~AI 176 (435)
.+.+ +...+|++||..
T Consensus 77 ------~~~~--~~g~iD~lVnnA 92 (261)
T PRK08690 77 ------DLGK--HWDGLDGLVHSI 92 (261)
T ss_pred ------HHHH--HhCCCcEEEECC
Confidence 1111 124689999873
No 410
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=75.22 E-value=27 Score=31.46 Aligned_cols=53 Identities=23% Similarity=0.355 Sum_probs=45.1
Q ss_pred EEEecCC----hHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcC
Q 013846 80 SVLGSTG----SIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRN 133 (435)
Q Consensus 80 ~IlGSTG----SIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~ 133 (435)
+|+|+.| .+|...+...-+. ..|+|+-|-...-.+.+.+.+.+.+|++|+++.
T Consensus 6 vl~~~~~gD~H~lG~~iv~~~lr~-~G~eVi~LG~~vp~e~i~~~a~~~~~d~V~lS~ 62 (137)
T PRK02261 6 VVLGVIGADCHAVGNKILDRALTE-AGFEVINLGVMTSQEEFIDAAIETDADAILVSS 62 (137)
T ss_pred EEEEeCCCChhHHHHHHHHHHHHH-CCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcC
Confidence 4666655 4898888887774 689999999999999999999999999999964
No 411
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=74.90 E-value=27 Score=34.45 Aligned_cols=95 Identities=12% Similarity=0.248 Sum_probs=56.5
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCc-chHHHHHHHHhcCCCCceEE
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNE-SLLDEIKEALANVEEKPEIL 154 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e-~~~~~l~~~l~~~~~~~~v~ 154 (435)
.++|.|.| +|+||..++.+.+...-. .|++... +-+.+ +.++++..+.+.-..+ +..+
T Consensus 167 g~~vlI~g-~g~iG~~~~~lak~~G~~-~v~~~~~--~~~~~-~~~~~~g~~~~v~~~~~~~~~---------------- 225 (351)
T cd08285 167 GDTVAVFG-IGPVGLMAVAGARLRGAG-RIIAVGS--RPNRV-ELAKEYGATDIVDYKNGDVVE---------------- 225 (351)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHcCCC-eEEEEeC--CHHHH-HHHHHcCCceEecCCCCCHHH----------------
Confidence 46899997 699999999999876321 2444332 23333 5566777655432211 1111
Q ss_pred echhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCce
Q 013846 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195 (435)
Q Consensus 155 ~G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~i 195 (435)
.+.++.....+|++++++.|-..+...+.+++.+-++
T Consensus 226 ----~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~ 262 (351)
T cd08285 226 ----QILKLTGGKGVDAVIIAGGGQDTFEQALKVLKPGGTI 262 (351)
T ss_pred ----HHHHHhCCCCCcEEEECCCCHHHHHHHHHHhhcCCEE
Confidence 1222333335899999877766677777777665443
No 412
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=74.76 E-value=10 Score=38.53 Aligned_cols=40 Identities=20% Similarity=0.268 Sum_probs=32.9
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHH
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITL 116 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~ 116 (435)
|.||+|.|++|=.|++.++.+.+.| .+++++.-.+.....
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~-~~~L~aa~~~~~~~~ 41 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAP-DLELVAAFDRPGSLS 41 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCC-CceEEEEEecCCccc
Confidence 4579999999999999999999988 588888766654433
No 413
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=74.70 E-value=28 Score=34.88 Aligned_cols=92 Identities=16% Similarity=0.152 Sum_probs=54.8
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcc-hHHHHHHHHhcCCCCceEEe
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNES-LLDEIKEALANVEEKPEILA 155 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~-~~~~l~~~l~~~~~~~~v~~ 155 (435)
++|.|.|+ |++|..++.+.+...-+ .|++.. ++-+++ +.++++..+.+.-.++. ..+.
T Consensus 188 ~~vlI~g~-g~vG~~~~~la~~~G~~-~v~~~~--~~~~k~-~~~~~~g~~~~i~~~~~~~~~~---------------- 246 (365)
T cd08278 188 SSIAVFGA-GAVGLAAVMAAKIAGCT-TIIAVD--IVDSRL-ELAKELGATHVINPKEEDLVAA---------------- 246 (365)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCC-eEEEEe--CCHHHH-HHHHHcCCcEEecCCCcCHHHH----------------
Confidence 68999975 99999999999987322 344433 233443 45677777655432221 1112
Q ss_pred chhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCc
Q 013846 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD 194 (435)
Q Consensus 156 G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ 194 (435)
+.++. ...+|+|++++.+-..+...+..++.+-+
T Consensus 247 ----v~~~~-~~~~d~vld~~g~~~~~~~~~~~l~~~G~ 280 (365)
T cd08278 247 ----IREIT-GGGVDYALDTTGVPAVIEQAVDALAPRGT 280 (365)
T ss_pred ----HHHHh-CCCCcEEEECCCCcHHHHHHHHHhccCCE
Confidence 22223 34689999986544455666666665544
No 414
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).
Probab=74.68 E-value=4.2 Score=38.98 Aligned_cols=31 Identities=23% Similarity=0.386 Sum_probs=24.6
Q ss_pred EEEEecCChHhHHHHHHHHhCCCceEEEEEec
Q 013846 79 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (435)
Q Consensus 79 I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa 110 (435)
|.|.|+||+||....+-+.+.... +|+++.-
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~~-~v~~~~~ 31 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGIT-DILVVDN 31 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCCc-eEEEEec
Confidence 579999999999999999987422 5766643
No 415
>PRK08309 short chain dehydrogenase; Provisional
Probab=74.47 E-value=65 Score=30.02 Aligned_cols=62 Identities=21% Similarity=0.244 Sum_probs=33.9
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhC-C-CEEEE-cCcchHHHHHHHH
Q 013846 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFK-P-QVVAV-RNESLLDEIKEAL 144 (435)
Q Consensus 78 ~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~-P-~~v~v-~~e~~~~~l~~~l 144 (435)
++.|+|+||++|. ...-+.+. .|+|..++ ++-+.+.+...+.. + +..++ .|-.+.+.++..+
T Consensus 2 ~vlVtGGtG~gg~-la~~L~~~--G~~V~v~~--R~~~~~~~l~~~l~~~~~i~~~~~Dv~d~~sv~~~i 66 (177)
T PRK08309 2 HALVIGGTGMLKR-VSLWLCEK--GFHVSVIA--RREVKLENVKRESTTPESITPLPLDYHDDDALKLAI 66 (177)
T ss_pred EEEEECcCHHHHH-HHHHHHHC--cCEEEEEE--CCHHHHHHHHHHhhcCCcEEEEEccCCCHHHHHHHH
Confidence 5899999998876 44444433 57887664 45555544433331 2 22222 3444455555543
No 416
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=74.31 E-value=27 Score=34.07 Aligned_cols=90 Identities=14% Similarity=0.240 Sum_probs=52.6
Q ss_pred eeEEEE-ecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcc-hHHHHHHHHhcCCCCceEE
Q 013846 77 KPISVL-GSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNES-LLDEIKEALANVEEKPEIL 154 (435)
Q Consensus 77 k~I~Il-GSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~-~~~~l~~~l~~~~~~~~v~ 154 (435)
.++.|. |++|++|..++.+.+.. ..+|++.+. +-++ .+.++++..+.+.-.++. ..+.++
T Consensus 144 ~~vlv~~~g~g~vG~~a~q~a~~~--G~~vi~~~~--~~~~-~~~~~~~g~~~~i~~~~~~~~~~v~------------- 205 (324)
T cd08291 144 AKAVVHTAAASALGRMLVRLCKAD--GIKVINIVR--RKEQ-VDLLKKIGAEYVLNSSDPDFLEDLK------------- 205 (324)
T ss_pred CcEEEEccCccHHHHHHHHHHHHc--CCEEEEEeC--CHHH-HHHHHHcCCcEEEECCCccHHHHHH-------------
Confidence 356666 99999999999998876 456777543 3333 345567776665543321 112222
Q ss_pred echhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcC
Q 013846 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAG 192 (435)
Q Consensus 155 ~G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~g 192 (435)
++.....+|+|++.+.|- .....+.+++.|
T Consensus 206 -------~~~~~~~~d~vid~~g~~-~~~~~~~~l~~~ 235 (324)
T cd08291 206 -------ELIAKLNATIFFDAVGGG-LTGQILLAMPYG 235 (324)
T ss_pred -------HHhCCCCCcEEEECCCcH-HHHHHHHhhCCC
Confidence 222223589999876543 334445555443
No 417
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=74.17 E-value=11 Score=38.25 Aligned_cols=29 Identities=21% Similarity=0.373 Sum_probs=26.7
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEE
Q 013846 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVAL 108 (435)
Q Consensus 78 ~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaL 108 (435)
||+|.|+||-.|+.+.+-+.+ +.|++|+.
T Consensus 2 ~V~V~Ga~GkMG~~v~~av~~--~~~~Lv~~ 30 (275)
T TIGR02130 2 QIMVNGCPGKMGKAVAEAADA--AGLEIVPT 30 (275)
T ss_pred eEEEeCCCChHHHHHHHHHhc--CCCEEEee
Confidence 799999999999999999988 57999995
No 418
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=74.16 E-value=24 Score=36.93 Aligned_cols=60 Identities=15% Similarity=0.307 Sum_probs=47.3
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCC-ceEEEEEecc--------------CCHHHHHHHHHhhCCCEEEEcCcc
Q 013846 75 GPKPISVLGSTGSIGTQTLDIVAEHED-KFRVVALAAG--------------SNITLLADQVKRFKPQVVAVRNES 135 (435)
Q Consensus 75 ~~k~I~IlGSTGSIG~qtLdVi~~~pd-~f~VvaLaa~--------------~N~~~L~~q~~~f~P~~v~v~~e~ 135 (435)
..+++.|+|+ |.-|.+..+-++++|+ .|+++|+.-. .+.+.+.+.+++.+.+.|.++.+.
T Consensus 127 ~~~rvLIiGa-g~~~~~l~~~L~~~~~~g~~vvG~idd~~~~~~~~~gvpVlg~~~dl~~~i~~~~vd~ViIA~p~ 201 (451)
T TIGR03023 127 NLRRVLIVGA-GELGRRLAERLARNPELGYRVVGFFDDRPDARTGVRGVPVLGKLDDLEELIREGEVDEVYIALPL 201 (451)
T ss_pred CCCcEEEEeC-CHHHHHHHHHHHhCccCCcEEEEEEeCCCccccccCCCCccCCHHHHHHHHHhcCCCEEEEeeCc
Confidence 3578999995 4568889999888775 7999998532 246889999999999999987543
No 419
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=73.77 E-value=34 Score=35.57 Aligned_cols=108 Identities=13% Similarity=0.215 Sum_probs=68.4
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEec-cCCHHHHHHHHH------hhCCCEEEEcCcchHHHHHHHHhcCCC
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA-GSNITLLADQVK------RFKPQVVAVRNESLLDEIKEALANVEE 149 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa-~~N~~~L~~q~~------~f~P~~v~v~~e~~~~~l~~~l~~~~~ 149 (435)
.||+|-|. |=||+..++.+.++ ++++|++.-. ....+.++-+.+ +|+.. |...+.. +.-.+.
T Consensus 3 ikigInG~-GRiGr~v~r~~~~~-~~~~ivaind~~~~~~~~a~ll~yDs~~g~~~~~-v~~~g~~--------l~~~g~ 71 (334)
T PRK08955 3 IKVGINGF-GRIGRLALRAAWDW-PELEFVQINDPAGDAATLAHLLEFDSVHGRWHHE-VTAEGDA--------IVINGK 71 (334)
T ss_pred eEEEEECc-CHHHHHHHHHHHhC-CCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCC-EEEcCCE--------EEECCE
Confidence 58999999 99999999998876 4699998765 446777766655 33222 2221111 110112
Q ss_pred CceEEechhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcC-Cceee
Q 013846 150 KPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAG-KDIAL 197 (435)
Q Consensus 150 ~~~v~~G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~g-K~iaL 197 (435)
.++++. +..+.++- -.++|+|+.+.-++.--.-.-.++++| |+|-+
T Consensus 72 ~i~v~~-~~~~~~~~-w~gvDiVle~tG~~~s~~~a~~hl~aGak~V~i 118 (334)
T PRK08955 72 RIRTTQ-NKAIADTD-WSGCDVVIEASGVMKTKALLQAYLDQGVKRVVV 118 (334)
T ss_pred EEEEEe-cCChhhCC-ccCCCEEEEccchhhcHHHHHHHHHCCCEEEEE
Confidence 244432 22344433 238999999888887777777889999 45543
No 420
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=73.76 E-value=29 Score=32.51 Aligned_cols=51 Identities=20% Similarity=0.283 Sum_probs=34.4
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEE
Q 013846 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVA 130 (435)
Q Consensus 75 ~~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~ 130 (435)
..++|.|.|++|++|..++.+.+.. ..+|+.++- +-+.+ +.++++..+.+.
T Consensus 144 ~g~~vlI~g~~~~~g~~~~~~a~~~--g~~v~~~~~--~~~~~-~~~~~~g~~~~~ 194 (325)
T cd08253 144 AGETVLVHGGSGAVGHAAVQLARWA--GARVIATAS--SAEGA-ELVRQAGADAVF 194 (325)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHc--CCEEEEEeC--CHHHH-HHHHHcCCCEEE
Confidence 3478999999999999999999886 466766543 22332 333455555443
No 421
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=73.69 E-value=33 Score=31.41 Aligned_cols=45 Identities=13% Similarity=0.237 Sum_probs=31.7
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCC
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKP 126 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P 126 (435)
.+|.|+|++|++|..+..+.+.. ..+|++.+. +-+.+ +++++|..
T Consensus 106 ~~vlv~g~~~~~g~~~~~~a~~~--g~~v~~~~~--~~~~~-~~~~~~g~ 150 (288)
T smart00829 106 ESVLIHAAAGGVGQAAIQLAQHL--GAEVFATAG--SPEKR-DFLRELGI 150 (288)
T ss_pred CEEEEecCCcHHHHHHHHHHHHc--CCEEEEEeC--CHHHH-HHHHHcCC
Confidence 47999999999999999988876 456766642 23332 33466654
No 422
>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]
Probab=73.51 E-value=9.1 Score=40.94 Aligned_cols=37 Identities=30% Similarity=0.550 Sum_probs=31.9
Q ss_pred CCCCCCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 013846 71 KTWDGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (435)
Q Consensus 71 ~~~~~~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLa 109 (435)
.+-..+..|.|.|+||=+|+...+++++. .|.|.++.
T Consensus 74 ~~~~~~~~VlVvGatG~vG~~iv~~llkr--gf~vra~V 110 (411)
T KOG1203|consen 74 NNSKKPTTVLVVGATGKVGRRIVKILLKR--GFSVRALV 110 (411)
T ss_pred CCCCCCCeEEEecCCCchhHHHHHHHHHC--CCeeeeec
Confidence 44455679999999999999999999997 49999986
No 423
>PLN02740 Alcohol dehydrogenase-like
Probab=73.49 E-value=29 Score=35.15 Aligned_cols=92 Identities=9% Similarity=0.091 Sum_probs=55.5
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCce-EEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEE
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKF-RVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f-~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~ 154 (435)
-.+|.|+|+ |+||..++.+.+.. .. +|+++.. +-++ .+.++++..+.+.-..+.. ..+.
T Consensus 199 g~~VlV~G~-G~vG~~a~q~ak~~--G~~~Vi~~~~--~~~r-~~~a~~~Ga~~~i~~~~~~-~~~~------------- 258 (381)
T PLN02740 199 GSSVAIFGL-GAVGLAVAEGARAR--GASKIIGVDI--NPEK-FEKGKEMGITDFINPKDSD-KPVH------------- 258 (381)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHC--CCCcEEEEcC--ChHH-HHHHHHcCCcEEEeccccc-chHH-------------
Confidence 358999996 99999999999886 34 4666543 3334 3455777765543211100 0111
Q ss_pred echhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHc
Q 013846 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEA 191 (435)
Q Consensus 155 ~G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~ 191 (435)
+.+.++... .+|+|+++..+...+.-.+.+++.
T Consensus 259 ---~~v~~~~~~-g~dvvid~~G~~~~~~~a~~~~~~ 291 (381)
T PLN02740 259 ---ERIREMTGG-GVDYSFECAGNVEVLREAFLSTHD 291 (381)
T ss_pred ---HHHHHHhCC-CCCEEEECCCChHHHHHHHHhhhc
Confidence 112222222 589999988766667766666655
No 424
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=73.49 E-value=35 Score=33.24 Aligned_cols=90 Identities=17% Similarity=0.226 Sum_probs=55.9
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEEe
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~~ 155 (435)
..+|.|.|++|.+|..++.+.+.. ..+|++.+..+ . .+.++++..+.+.-.... .+.+.
T Consensus 163 g~~vlI~g~~g~ig~~~~~~a~~~--G~~v~~~~~~~---~-~~~~~~~g~~~~~~~~~~---~~~~~------------ 221 (350)
T cd08248 163 GKRVLILGGSGGVGTFAIQLLKAW--GAHVTTTCSTD---A-IPLVKSLGADDVIDYNNE---DFEEE------------ 221 (350)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC--CCeEEEEeCcc---h-HHHHHHhCCceEEECCCh---hHHHH------------
Confidence 468999999999999999999887 45677766332 2 234566665544322111 11111
Q ss_pred chhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCc
Q 013846 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD 194 (435)
Q Consensus 156 G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ 194 (435)
+.....+|+|++.+.|- .+...+..+..+-+
T Consensus 222 -------l~~~~~vd~vi~~~g~~-~~~~~~~~l~~~G~ 252 (350)
T cd08248 222 -------LTERGKFDVILDTVGGD-TEKWALKLLKKGGT 252 (350)
T ss_pred -------HHhcCCCCEEEECCChH-HHHHHHHHhccCCE
Confidence 11123589999887665 66667777765533
No 425
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=73.44 E-value=12 Score=34.46 Aligned_cols=71 Identities=17% Similarity=0.182 Sum_probs=49.0
Q ss_pred chhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCceeecccceeeeccccchHHhhhcCCeEeecccchhhHHHhh
Q 013846 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 235 (435)
Q Consensus 156 G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLANKESLV~aG~lv~~~a~~~~~~IiPVDSEHsAIfQ~L 235 (435)
+.+.+.++. +.++....+..-.-+...+..++.. .=-.|+||..+.+.|+++|..-++++|.-.+|.+.|
T Consensus 91 ~~~~~~~ll---~~~i~~~~~~~~~e~~~~i~~~~~~-------G~~viVGg~~~~~~A~~~gl~~v~i~sg~esi~~Al 160 (176)
T PF06506_consen 91 GLESIEELL---GVDIKIYPYDSEEEIEAAIKQAKAE-------GVDVIVGGGVVCRLARKLGLPGVLIESGEESIRRAL 160 (176)
T ss_dssp CHHHHHHHH---T-EEEEEEESSHHHHHHHHHHHHHT-------T--EEEESHHHHHHHHHTTSEEEESS--HHHHHHHH
T ss_pred HHHHHHHHh---CCceEEEEECCHHHHHHHHHHHHHc-------CCcEEECCHHHHHHHHHcCCcEEEEEecHHHHHHHH
Confidence 334444444 5678887777777777666655432 234677888899999999999999999999999888
Q ss_pred c
Q 013846 236 Q 236 (435)
Q Consensus 236 ~ 236 (435)
.
T Consensus 161 ~ 161 (176)
T PF06506_consen 161 E 161 (176)
T ss_dssp H
T ss_pred H
Confidence 6
No 426
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=73.04 E-value=40 Score=32.43 Aligned_cols=92 Identities=14% Similarity=0.145 Sum_probs=55.7
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEEec
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~~G 156 (435)
.+|.|.| +|.+|..++.+.++. .++|++++. +-+.+ +.++++..+.+.-..+....
T Consensus 167 ~~vli~g-~g~vG~~~~~la~~~--G~~V~~~~~--s~~~~-~~~~~~g~~~~~~~~~~~~~------------------ 222 (338)
T cd08254 167 ETVLVIG-LGGLGLNAVQIAKAM--GAAVIAVDI--KEEKL-ELAKELGADEVLNSLDDSPK------------------ 222 (338)
T ss_pred CEEEEEC-CcHHHHHHHHHHHHc--CCEEEEEcC--CHHHH-HHHHHhCCCEEEcCCCcCHH------------------
Confidence 4788865 689999999999987 466776643 33333 34466766655433222111
Q ss_pred hhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCc
Q 013846 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD 194 (435)
Q Consensus 157 ~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ 194 (435)
+.+ +......+|+|++.+.+-..+...+..++.+-+
T Consensus 223 -~~~-~~~~~~~~D~vid~~g~~~~~~~~~~~l~~~G~ 258 (338)
T cd08254 223 -DKK-AAGLGGGFDVIFDFVGTQPTFEDAQKAVKPGGR 258 (338)
T ss_pred -HHH-HHhcCCCceEEEECCCCHHHHHHHHHHhhcCCE
Confidence 111 122233589999886555567777777776544
No 427
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=72.84 E-value=63 Score=31.05 Aligned_cols=117 Identities=17% Similarity=0.186 Sum_probs=71.1
Q ss_pred cCChHhH-HHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchH---HHHHHHHhcCCCC-ceEE-ech
Q 013846 84 STGSIGT-QTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLL---DEIKEALANVEEK-PEIL-AGE 157 (435)
Q Consensus 84 STGSIG~-qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~---~~l~~~l~~~~~~-~~v~-~G~ 157 (435)
|-.+|-. ++-++.+..|...+.||+..+.+.+.+.+.++++++++|=+...... +.|+... +.. ++++ ..+
T Consensus 35 S~R~V~~~~a~~i~~~~~~~i~~VgVf~~~~~~~i~~~~~~~~~d~vQLHg~e~~~~~~~l~~~~---~~~iik~i~v~~ 111 (210)
T PRK01222 35 SPRYVSPEQAAELAAALPPFVKVVGVFVNASDEEIDEIVETVPLDLLQLHGDETPEFCRQLKRRY---GLPVIKALRVRS 111 (210)
T ss_pred CCCcCCHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHhhc---CCcEEEEEecCC
Confidence 4444533 44455555666788999999999999999999999999999754443 3444321 111 2222 222
Q ss_pred -hHHHHHhcC-CCCCEEE-Eecc---cccCcHHHHHHHHcCCceeecccceeeeccc
Q 013846 158 -QGVIEAARH-PDAVTVV-TGIV---GCAGLKPTVAAIEAGKDIALANKETLIAGGP 208 (435)
Q Consensus 158 -egl~~l~~~-~~~D~Vv-~AIv---G~aGL~pt~~Ai~~gK~iaLANKESLV~aG~ 208 (435)
+.+..+... ..+|.++ ++-+ |-.|...-+..+.. .+ .+..+++||=
T Consensus 112 ~~~l~~~~~~~~~~d~~L~Ds~~~~~GGtG~~~dw~~l~~--~~---~~p~~LAGGi 163 (210)
T PRK01222 112 AGDLEAAAAYYGDADGLLLDAYVGLPGGTGKTFDWSLLPA--GL---AKPWILAGGL 163 (210)
T ss_pred HHHHHHHHhhhccCCEEEEcCCCCCCCCCCCccchHHhhh--cc---CCCEEEECCC
Confidence 234443222 2467544 4433 77788877777732 22 5677888873
No 428
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=72.79 E-value=40 Score=32.27 Aligned_cols=96 Identities=9% Similarity=0.129 Sum_probs=57.2
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEEec
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~~G 156 (435)
.+|.|.|++|.+|..++.+.+... .+++..+ ++-+.+. .++++..+.+.-.... +.+.
T Consensus 142 ~~vlI~ga~g~~g~~~~~~a~~~g--~~v~~~~--~~~~~~~-~~~~~g~~~~~~~~~~--~~~~--------------- 199 (334)
T PTZ00354 142 QSVLIHAGASGVGTAAAQLAEKYG--AATIITT--SSEEKVD-FCKKLAAIILIRYPDE--EGFA--------------- 199 (334)
T ss_pred CEEEEEcCCchHHHHHHHHHHHcC--CEEEEEe--CCHHHHH-HHHHcCCcEEEecCCh--hHHH---------------
Confidence 589999999999999999999874 4555433 2334333 3355666544322111 1011
Q ss_pred hhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCcee
Q 013846 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (435)
Q Consensus 157 ~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ia 196 (435)
+.+.++.....+|.+++.. |-..+...+.++..+-++.
T Consensus 200 -~~~~~~~~~~~~d~~i~~~-~~~~~~~~~~~l~~~g~~i 237 (334)
T PTZ00354 200 -PKVKKLTGEKGVNLVLDCV-GGSYLSETAEVLAVDGKWI 237 (334)
T ss_pred -HHHHHHhCCCCceEEEECC-chHHHHHHHHHhccCCeEE
Confidence 1122233334589999876 4466777777776665544
No 429
>PRK06849 hypothetical protein; Provisional
Probab=72.53 E-value=37 Score=34.72 Aligned_cols=36 Identities=8% Similarity=0.109 Sum_probs=29.4
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccC
Q 013846 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGS 112 (435)
Q Consensus 75 ~~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~ 112 (435)
.+|+|.|+|+...+|.+...-+.+. .++|+++....
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~--G~~Vi~~d~~~ 38 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNA--GHTVILADSLK 38 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCc
Confidence 4689999999999888888888876 78888876543
No 430
>PLN02827 Alcohol dehydrogenase-like
Probab=72.12 E-value=35 Score=34.74 Aligned_cols=93 Identities=12% Similarity=0.124 Sum_probs=54.8
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceE-EEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEE
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFR-VVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~-VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~ 154 (435)
..+|.|.|+ |.||..++.+.+.. ..+ |++.. ++-++ .+.++++..+.+.-..+. .+.+.+
T Consensus 194 g~~VlV~G~-G~vG~~~iqlak~~--G~~~vi~~~--~~~~~-~~~a~~lGa~~~i~~~~~-~~~~~~------------ 254 (378)
T PLN02827 194 GSSVVIFGL-GTVGLSVAQGAKLR--GASQIIGVD--INPEK-AEKAKTFGVTDFINPNDL-SEPIQQ------------ 254 (378)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHc--CCCeEEEEC--CCHHH-HHHHHHcCCcEEEccccc-chHHHH------------
Confidence 468999995 99999999999876 453 44432 23333 356678877655322110 011111
Q ss_pred echhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcC
Q 013846 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAG 192 (435)
Q Consensus 155 ~G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~g 192 (435)
.+.++... .+|.|++++.+-..+.-.+..++.|
T Consensus 255 ----~v~~~~~~-g~d~vid~~G~~~~~~~~l~~l~~g 287 (378)
T PLN02827 255 ----VIKRMTGG-GADYSFECVGDTGIATTALQSCSDG 287 (378)
T ss_pred ----HHHHHhCC-CCCEEEECCCChHHHHHHHHhhccC
Confidence 12222222 5899999865545566677777665
No 431
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=72.02 E-value=2.3 Score=39.91 Aligned_cols=36 Identities=22% Similarity=0.464 Sum_probs=21.3
Q ss_pred CeeEEEEecCChHhHHHH-HHHHh-C--CCceEEEEEeccC
Q 013846 76 PKPISVLGSTGSIGTQTL-DIVAE-H--EDKFRVVALAAGS 112 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtL-dVi~~-~--pd~f~VvaLaa~~ 112 (435)
.+.++|+|.||| |++++ .++-+ . ..++.++-+=.|.
T Consensus 23 ~~H~~I~G~TGs-GKS~~~~~ll~~l~~~~~~~~ii~D~~G 62 (229)
T PF01935_consen 23 NRHIAIFGTTGS-GKSNTVKVLLEELLKKKGAKVIIFDPHG 62 (229)
T ss_pred cceEEEECCCCC-CHHHHHHHHHHHHHhcCCCCEEEEcCCC
Confidence 478999999999 76653 33221 1 2345555554433
No 432
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=71.75 E-value=13 Score=35.23 Aligned_cols=48 Identities=15% Similarity=0.297 Sum_probs=33.9
Q ss_pred eeEEEEecCChHhHHHHHHHHhCC-CceEEEEEeccCCHHHHHHHHHhhC
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHE-DKFRVVALAAGSNITLLADQVKRFK 125 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~p-d~f~VvaLaa~~N~~~L~~q~~~f~ 125 (435)
+||+|+| +|.+|+....-+.++. ..++.+.+..++|.+.+.+..+++.
T Consensus 5 ~kI~iIG-~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 53 (245)
T PRK07634 5 HRILFIG-AGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYN 53 (245)
T ss_pred CeEEEEC-cCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcC
Confidence 5799999 6999998888776653 3454333445567778777777665
No 433
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=71.67 E-value=43 Score=32.80 Aligned_cols=95 Identities=16% Similarity=0.201 Sum_probs=56.7
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEE
Q 013846 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (435)
Q Consensus 75 ~~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~ 154 (435)
.-++|.|.| .|++|..++.+.+.. .++|++++... +.. +.++++..+.+.-..+ ...+..
T Consensus 165 ~~~~vlV~g-~g~vg~~~~~~a~~~--G~~vi~~~~~~--~~~-~~~~~~g~~~~i~~~~--~~~~~~------------ 224 (345)
T cd08260 165 PGEWVAVHG-CGGVGLSAVMIASAL--GARVIAVDIDD--DKL-ELARELGAVATVNASE--VEDVAA------------ 224 (345)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHc--CCeEEEEeCCH--HHH-HHHHHhCCCEEEcccc--chhHHH------------
Confidence 346899999 799999999999986 57777765432 332 3335666544432221 001111
Q ss_pred echhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCc
Q 013846 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD 194 (435)
Q Consensus 155 ~G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ 194 (435)
.+..+... .+|.+++.+.+-..+...+..++.+-+
T Consensus 225 ----~~~~~~~~-~~d~vi~~~g~~~~~~~~~~~l~~~g~ 259 (345)
T cd08260 225 ----AVRDLTGG-GAHVSVDALGIPETCRNSVASLRKRGR 259 (345)
T ss_pred ----HHHHHhCC-CCCEEEEcCCCHHHHHHHHHHhhcCCE
Confidence 12222233 589999986655566667777766544
No 434
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=71.54 E-value=28 Score=37.39 Aligned_cols=45 Identities=9% Similarity=0.164 Sum_probs=32.4
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhC
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFK 125 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~ 125 (435)
.|+++|+|+ |.+|+.....+.+.. ++|+. .+++.+.+.+.+.+++
T Consensus 332 ~k~vlIiGa-GgiG~aia~~L~~~G--~~V~i--~~R~~~~~~~la~~~~ 376 (477)
T PRK09310 332 NQHVAIVGA-GGAAKAIATTLARAG--AELLI--FNRTKAHAEALASRCQ 376 (477)
T ss_pred CCEEEEEcC-cHHHHHHHHHHHHCC--CEEEE--EeCCHHHHHHHHHHhc
Confidence 368999995 899999999888763 45543 3567777666666554
No 435
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=71.47 E-value=17 Score=38.19 Aligned_cols=100 Identities=32% Similarity=0.373 Sum_probs=54.7
Q ss_pred HHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh------CCCEEEEcCcchHHHHHHHHhcCCCCceEEechhHHHHHh
Q 013846 91 QTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF------KPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAA 164 (435)
Q Consensus 91 qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f------~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~~G~egl~~l~ 164 (435)
+.|..++++ +.+|+.=+++.|-..+++.+++. +.+..+|..+...+.+++.+.. +..++-+...+-+.+.
T Consensus 62 ~~L~~~~~~--gIkvI~NaGg~np~~~a~~v~eia~e~Gl~lkvA~V~gDd~~~~v~~~~~~-g~~~~~l~~~~~l~~~- 137 (362)
T PF07287_consen 62 PLLPAAAEK--GIKVITNAGGLNPAGCADIVREIARELGLSLKVAVVYGDDLKDEVKELLAE-GETIRPLDTGPPLSEW- 137 (362)
T ss_pred HHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHHHHHhcCCCeeEEEEECccchHhHHHHHhC-CCCCccCCCCCCcchh-
Confidence 445555554 55565556666665555554432 3556666666666666665531 1111111111122111
Q ss_pred cCCCCCEEEEecccccCcHHHHHHHHcCCceeecc
Q 013846 165 RHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALAN 199 (435)
Q Consensus 165 ~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLAN 199 (435)
..+ +..++...|-.|..+||+.|-+|-++=
T Consensus 138 ---~~~--~~~a~aylGa~pI~~AL~~GADIVI~G 167 (362)
T PF07287_consen 138 ---DDR--IVSANAYLGAEPIVEALEAGADIVITG 167 (362)
T ss_pred ---ccc--cceEEEecChHHHHHHHHcCCCEEEeC
Confidence 111 456778888999999999998765543
No 436
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=71.36 E-value=40 Score=32.40 Aligned_cols=50 Identities=20% Similarity=0.391 Sum_probs=37.2
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEE
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVA 130 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~ 130 (435)
..+|.|.|++|++|..+..+.+.. .++|++.+... ++. +.++++..+.+.
T Consensus 147 ~~~vlI~ga~g~vg~~~~~~A~~~--G~~vi~~~~~~--~~~-~~~~~~g~~~~~ 196 (324)
T cd08288 147 DGPVLVTGAAGGVGSVAVALLARL--GYEVVASTGRP--EEA-DYLRSLGASEII 196 (324)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC--CCeEEEEeCCH--HHH-HHHHhcCCCEEE
Confidence 368999999999999999999987 56788876433 443 344677766544
No 437
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=71.29 E-value=18 Score=35.48 Aligned_cols=83 Identities=12% Similarity=0.135 Sum_probs=47.6
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEEec
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~~G 156 (435)
++++|+| +|.||..++.+.+.. ..+++..+ ..+-+.|. .++++. ++ |..
T Consensus 146 ~~vlV~G-~G~vG~~a~q~ak~~--G~~~v~~~-~~~~~rl~-~a~~~~----~i-~~~--------------------- 194 (308)
T TIGR01202 146 LPDLIVG-HGTLGRLLARLTKAA--GGSPPAVW-ETNPRRRD-GATGYE----VL-DPE--------------------- 194 (308)
T ss_pred CcEEEEC-CCHHHHHHHHHHHHc--CCceEEEe-CCCHHHHH-hhhhcc----cc-Chh---------------------
Confidence 4688887 588888888888776 45544433 33444443 223221 11 100
Q ss_pred hhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCcee
Q 013846 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (435)
Q Consensus 157 ~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ia 196 (435)
++ ....+|+|+++..+-..+.-.+..++.|-++.
T Consensus 195 ~~------~~~g~Dvvid~~G~~~~~~~~~~~l~~~G~iv 228 (308)
T TIGR01202 195 KD------PRRDYRAIYDASGDPSLIDTLVRRLAKGGEIV 228 (308)
T ss_pred hc------cCCCCCEEEECCCCHHHHHHHHHhhhcCcEEE
Confidence 00 11358999998766566777777777665543
No 438
>PRK12367 short chain dehydrogenase; Provisional
Probab=71.15 E-value=22 Score=34.23 Aligned_cols=32 Identities=22% Similarity=0.430 Sum_probs=26.6
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLa 109 (435)
.|++.|.|+||.||..+..-+.+. .++|+.++
T Consensus 14 ~k~~lITGas~gIG~ala~~l~~~--G~~Vi~~~ 45 (245)
T PRK12367 14 GKRIGITGASGALGKALTKAFRAK--GAKVIGLT 45 (245)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHC--CCEEEEEE
Confidence 368999999999999999888765 56787764
No 439
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=71.12 E-value=45 Score=32.39 Aligned_cols=62 Identities=15% Similarity=0.041 Sum_probs=38.3
Q ss_pred eeEEEEecC--ChHhHHHHHHHHhCCCceEEEEEeccCCH---HHHHHHHHhhCCCEEEEcCcchHHHHHH
Q 013846 77 KPISVLGST--GSIGTQTLDIVAEHEDKFRVVALAAGSNI---TLLADQVKRFKPQVVAVRNESLLDEIKE 142 (435)
Q Consensus 77 k~I~IlGST--GSIG~qtLdVi~~~pd~f~VvaLaa~~N~---~~L~~q~~~f~P~~v~v~~e~~~~~l~~ 142 (435)
|.+.|.|++ +-||..+...+.+. .++|+. ++ +|. +.+.+..+++..+.....|-...+.+++
T Consensus 6 k~~lItGas~~~GIG~aiA~~la~~--G~~Vil-~~-r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~ 72 (274)
T PRK08415 6 KKGLIVGVANNKSIAYGIAKACFEQ--GAELAF-TY-LNEALKKRVEPIAQELGSDYVYELDVSKPEHFKS 72 (274)
T ss_pred cEEEEECCCCCCCHHHHHHHHHHHC--CCEEEE-Ee-cCHHHHHHHHHHHHhcCCceEEEecCCCHHHHHH
Confidence 789999997 57999999988875 566664 33 443 3455555555433333344444444444
No 440
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=71.11 E-value=7.7 Score=41.00 Aligned_cols=57 Identities=19% Similarity=0.366 Sum_probs=42.2
Q ss_pred cccCCCCCCeeEEEEecCChHhHHHHHHHHhCCCceE-----EEEEe-ccCCHHHHHHHHHhhC
Q 013846 68 TFRKTWDGPKPISVLGSTGSIGTQTLDIVAEHEDKFR-----VVALA-AGSNITLLADQVKRFK 125 (435)
Q Consensus 68 ~~~~~~~~~k~I~IlGSTGSIG~qtLdVi~~~pd~f~-----VvaLa-a~~N~~~L~~q~~~f~ 125 (435)
.-+++|..|-||+|+|+||.||.+..--+.. .+-|. ++.|. ...|.+++..++.++.
T Consensus 36 ~~~~~~~~p~KV~IIGAaG~VG~~~A~~l~~-~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~ 98 (387)
T TIGR01757 36 SLTKSWKKTVNVAVSGAAGMISNHLLFMLAS-GEVFGQDQPIALKLLGSERSKEALEGVAMELE 98 (387)
T ss_pred HHHhcCCCCeEEEEECCCcHHHHHHHHHHHh-ccccCCCCceEEEEeccCccchhhhHHHHHHH
Confidence 3468899999999999999999998876654 33444 33344 5678888888877653
No 441
>PRK07261 topology modulation protein; Provisional
Probab=70.78 E-value=2.6 Score=38.59 Aligned_cols=18 Identities=39% Similarity=0.643 Sum_probs=15.9
Q ss_pred eeEEEEecCChHhHHHHHH
Q 013846 77 KPISVLGSTGSIGTQTLDI 95 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdV 95 (435)
+||+|+|.+|| |++||--
T Consensus 1 ~ri~i~G~~Gs-GKSTla~ 18 (171)
T PRK07261 1 MKIAIIGYSGS-GKSTLAR 18 (171)
T ss_pred CEEEEEcCCCC-CHHHHHH
Confidence 47999999999 9999864
No 442
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=70.46 E-value=34 Score=34.30 Aligned_cols=91 Identities=11% Similarity=0.132 Sum_probs=53.2
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCce-EEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEEe
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKF-RVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f-~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~~ 155 (435)
.+|.|.|+ |+||..++.+.+.. .. +|+++.. +-+++ +.++++..+.+.-..+.. ..+.
T Consensus 186 ~~vlV~G~-g~vG~~~~~~a~~~--G~~~Vi~~~~--~~~~~-~~~~~~ga~~~i~~~~~~-~~~~-------------- 244 (365)
T cd08277 186 STVAVFGL-GAVGLSAIMGAKIA--GASRIIGVDI--NEDKF-EKAKEFGATDFINPKDSD-KPVS-------------- 244 (365)
T ss_pred CEEEEECC-CHHHHHHHHHHHHc--CCCeEEEEeC--CHHHH-HHHHHcCCCcEecccccc-chHH--------------
Confidence 58999985 99999999998886 45 4655543 33343 345777766554322110 0011
Q ss_pred chhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHc
Q 013846 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEA 191 (435)
Q Consensus 156 G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~ 191 (435)
+.+.++.. ..+|+|+++..+-..+...+.+++.
T Consensus 245 --~~~~~~~~-~g~d~vid~~g~~~~~~~~~~~l~~ 277 (365)
T cd08277 245 --EVIREMTG-GGVDYSFECTGNADLMNEALESTKL 277 (365)
T ss_pred --HHHHHHhC-CCCCEEEECCCChHHHHHHHHhccc
Confidence 11222333 3589999886655555556666643
No 443
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=70.46 E-value=30 Score=32.61 Aligned_cols=91 Identities=23% Similarity=0.346 Sum_probs=59.6
Q ss_pred EEEecCC----hHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcC--cchHH---HHHHHHhcCCC-
Q 013846 80 SVLGSTG----SIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRN--ESLLD---EIKEALANVEE- 149 (435)
Q Consensus 80 ~IlGSTG----SIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~--e~~~~---~l~~~l~~~~~- 149 (435)
+|+|+.+ .||...+..+-+. ..|+|+-|...-..+.+.+.+++.+|++|+++- ..... ++-+.+...+.
T Consensus 85 vl~~~~~gd~H~lG~~~v~~~l~~-~G~~vi~lG~~~p~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~lr~~~~~ 163 (201)
T cd02070 85 VVIGTVEGDIHDIGKNLVATMLEA-NGFEVIDLGRDVPPEEFVEAVKEHKPDILGLSALMTTTMGGMKEVIEALKEAGLR 163 (201)
T ss_pred EEEEecCCccchHHHHHHHHHHHH-CCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHCCCC
Confidence 5666655 6999888777654 589999888888899999999999999999864 22222 22233333333
Q ss_pred -CceEEechhHHHH-HhcCCCCCE
Q 013846 150 -KPEILAGEQGVIE-AARHPDAVT 171 (435)
Q Consensus 150 -~~~v~~G~egl~~-l~~~~~~D~ 171 (435)
++.|+.|-..+.+ .++.-.+|.
T Consensus 164 ~~~~i~vGG~~~~~~~~~~~GaD~ 187 (201)
T cd02070 164 DKVKVMVGGAPVNQEFADEIGADG 187 (201)
T ss_pred cCCeEEEECCcCCHHHHHHcCCcE
Confidence 5666666544432 344444554
No 444
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=70.03 E-value=32 Score=28.73 Aligned_cols=88 Identities=22% Similarity=0.254 Sum_probs=49.1
Q ss_pred hHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcC--cchHH---HHHHHHhcCCCCceEEech-h--
Q 013846 87 SIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRN--ESLLD---EIKEALANVEEKPEILAGE-Q-- 158 (435)
Q Consensus 87 SIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~--e~~~~---~l~~~l~~~~~~~~v~~G~-e-- 158 (435)
.+|...+.-+-+. ..|+|.-+-+..+.+.+.+++++++|+.|+++- ..... ++-+..+....++.+..|- .
T Consensus 14 ~lGl~~la~~l~~-~G~~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG~~~t 92 (121)
T PF02310_consen 14 PLGLLYLAAYLRK-AGHEVDILDANVPPEELVEALRAERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGGPHAT 92 (121)
T ss_dssp SHHHHHHHHHHHH-TTBEEEEEESSB-HHHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEESSSG
T ss_pred hHHHHHHHHHHHH-CCCeEEEECCCCCHHHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEECCchh
Confidence 4555555433332 378888777777779999999999999999853 22222 2222333333444554443 2
Q ss_pred H-HHHHhcC-CCCCEEEEe
Q 013846 159 G-VIEAARH-PDAVTVVTG 175 (435)
Q Consensus 159 g-l~~l~~~-~~~D~Vv~A 175 (435)
. -.++.+. +.+|.|+.+
T Consensus 93 ~~~~~~l~~~~~~D~vv~G 111 (121)
T PF02310_consen 93 ADPEEILREYPGIDYVVRG 111 (121)
T ss_dssp HHHHHHHHHHHTSEEEEEE
T ss_pred cChHHHhccCcCcceecCC
Confidence 1 2222332 567777754
No 445
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=69.99 E-value=38 Score=30.99 Aligned_cols=141 Identities=13% Similarity=0.155 Sum_probs=80.9
Q ss_pred hHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh--CCCEEEE-cCcchHHHHHHHHhcCCCCceE---E-----e
Q 013846 87 SIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF--KPQVVAV-RNESLLDEIKEALANVEEKPEI---L-----A 155 (435)
Q Consensus 87 SIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f--~P~~v~v-~~e~~~~~l~~~l~~~~~~~~v---~-----~ 155 (435)
.||..|-+.++++ .|.+.-.....+.+.|.+.+++. ....+.+ ..+.....+.+.|...+..+.. + .
T Consensus 83 avG~~Ta~~l~~~--g~~~~~~~~~~~~~~L~~~i~~~~~~~~~il~~~g~~~~~~l~~~L~~~g~~v~~~~~Y~~~~~~ 160 (239)
T cd06578 83 AVGPKTAEALREA--GLTADFVPEEGDSEGLLELLELQDGKGKRILRPRGGRAREDLAEALRERGAEVDEVEVYRTVPPD 160 (239)
T ss_pred EECHHHHHHHHHc--CCCceeCCCccCHHHHHHHHHhcCCCCCEEEEEcCcchhHHHHHHHHHCCCEEEEEEEEEEECCC
Confidence 6799999999986 66666666777888888888885 4445444 4444456777777543322211 1 0
Q ss_pred chhHHHHHhcCCCCCEEE-EecccccCcHHHHHHHHcCCceeecccceeeeccccchHHhhhcCCe--EeecccchhhHH
Q 013846 156 GEQGVIEAARHPDAVTVV-TGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIK--ILPADSEHSAIF 232 (435)
Q Consensus 156 G~egl~~l~~~~~~D~Vv-~AIvG~aGL~pt~~Ai~~gK~iaLANKESLV~aG~lv~~~a~~~~~~--IiPVDSEHsAIf 232 (435)
..+...++......|.|+ ..-.+ +......+..-....+ .+-.++|-|+-..+.+++.|.+ ++|=.....++.
T Consensus 161 ~~~~~~~~l~~~~~~~iiftS~~~---v~~f~~~~~~~~~~~~-~~~~~~aig~~t~~~l~~~g~~~~~~~~~~~~~~l~ 236 (239)
T cd06578 161 LDAELLELLEEGAIDAVLFTSPST---VRNLLELLGKEGRALL-KNVKIAAIGPRTAEALRELGLKVVIVAESPTLEALL 236 (239)
T ss_pred CcHHHHHHHHcCCCcEEEEeCHHH---HHHHHHHHhhhhhhhh-cCCeEEEECHHHHHHHHHcCCCceeeecCCChHHHH
Confidence 112334444555566444 33444 4444444432111222 3346788899999999988764 333332244554
Q ss_pred H
Q 013846 233 Q 233 (435)
Q Consensus 233 Q 233 (435)
+
T Consensus 237 ~ 237 (239)
T cd06578 237 E 237 (239)
T ss_pred h
Confidence 4
No 446
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=69.93 E-value=29 Score=34.89 Aligned_cols=47 Identities=17% Similarity=0.275 Sum_probs=33.8
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCC
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKP 126 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P 126 (435)
.++|+|+|+ |.||..++..+++. ...+| .++ +++.+...+.++++..
T Consensus 178 ~~~V~ViGa-G~iG~~~a~~L~~~-g~~~V-~v~-~r~~~ra~~la~~~g~ 224 (311)
T cd05213 178 GKKVLVIGA-GEMGELAAKHLAAK-GVAEI-TIA-NRTYERAEELAKELGG 224 (311)
T ss_pred CCEEEEECc-HHHHHHHHHHHHHc-CCCEE-EEE-eCCHHHHHHHHHHcCC
Confidence 457999998 99999999998873 22223 222 5677877788888764
No 447
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=69.46 E-value=80 Score=30.06 Aligned_cols=145 Identities=13% Similarity=0.101 Sum_probs=86.3
Q ss_pred hHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhC-C--CEEEEcCcchHHHHHHHHhcCCCCc---eEEe-----
Q 013846 87 SIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFK-P--QVVAVRNESLLDEIKEALANVEEKP---EILA----- 155 (435)
Q Consensus 87 SIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~-P--~~v~v~~e~~~~~l~~~l~~~~~~~---~v~~----- 155 (435)
.||..|-+.++++ .|..+ .....+.+.|++...... + +.+.+..+...+.|.+.|...+..+ .++-
T Consensus 80 aVG~~Ta~~l~~~--G~~~~-~~~~~~~e~L~~~~~~~~~~~~~vL~~rg~~~r~~l~~~L~~~G~~v~~~~vY~~~~~~ 156 (240)
T PRK09189 80 AVGEATAEAAREL--GFRHV-IEGGGDGVRLAETVAAALAPTARLLYLAGRPRAPVFEDRLAAAGIPFRVAECYDMLPVM 156 (240)
T ss_pred EEcHHHHHHHHHc--CCCCC-cCCCCCHHHHHHHHHHhcCCCCcEEEeccCcccchhHHHHHhCCCeeEEEEEEEeecCC
Confidence 4799999999987 45533 344567888877765532 2 3555666656667777776444332 2221
Q ss_pred -chhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCceeecccceeeeccccchHHhhhcCC-e-EeecccchhhHH
Q 013846 156 -GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNI-K-ILPADSEHSAIF 232 (435)
Q Consensus 156 -G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLANKESLV~aG~lv~~~a~~~~~-~-IiPVDSEHsAIf 232 (435)
..+.+.++....++|.|+..-.- ++.-.+..+...+.-..-++-.+||=|+-+.+.+++.+. + +++=.....+++
T Consensus 157 ~~~~~~~~~l~~~~~d~i~f~S~~--~~~~f~~~~~~~~~~~~l~~~~~v~Ig~~ta~al~~~~~~~~~ia~~~t~~~l~ 234 (240)
T PRK09189 157 YSPATLSAILGGAPFDAVLLYSRV--AARRFFALMRLSIAPPADEKTRFLCLSARVAAALPASLRAQALIAAMPDEKSLL 234 (240)
T ss_pred CChHHHHHHHhcCCCCEEEEeCHH--HHHHHHHHHhhhcCcccccccCeEEeCHHHHHHHhhccccceeecCCCCHHHHH
Confidence 12334555566678988776433 355555555432211223456789999999888887642 3 344444556677
Q ss_pred Hhhc
Q 013846 233 QCIQ 236 (435)
Q Consensus 233 Q~L~ 236 (435)
++|.
T Consensus 235 ~~l~ 238 (240)
T PRK09189 235 SLLS 238 (240)
T ss_pred HHhh
Confidence 6664
No 448
>TIGR03022 WbaP_sugtrans Undecaprenyl-phosphate galactose phosphotransferase, WbaP. This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred.
Probab=69.45 E-value=22 Score=37.35 Aligned_cols=58 Identities=12% Similarity=0.091 Sum_probs=44.4
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCC-ceEEEEEeccC---------------CHHHHHHHHHhhCCCEEEEcCc
Q 013846 75 GPKPISVLGSTGSIGTQTLDIVAEHED-KFRVVALAAGS---------------NITLLADQVKRFKPQVVAVRNE 134 (435)
Q Consensus 75 ~~k~I~IlGSTGSIG~qtLdVi~~~pd-~f~VvaLaa~~---------------N~~~L~~q~~~f~P~~v~v~~e 134 (435)
..+++.|+|+. .-|.+.++.++++|+ .|+++|...-. + +.+.+.+++.+.+.|.++.+
T Consensus 124 ~~rrvlIiGag-~~~~~l~~~l~~~~~~g~~vvGfidd~~~~~~~~i~g~pVlg~-~~l~~~i~~~~id~ViIAip 197 (456)
T TIGR03022 124 WGRPAVIIGAG-QNAAILYRALQSNPQLGLRPLAVVDTDPAASGRLLTGLPVVGA-DDALRLYARTRYAYVIVAMP 197 (456)
T ss_pred CCceEEEEeCC-HHHHHHHHHHhhCccCCcEEEEEEeCCccccccccCCCcccCh-hHHHHHHHhCCCCEEEEecC
Confidence 45789999986 558899999988775 69999975321 2 66778888899988877654
No 449
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=69.19 E-value=48 Score=33.07 Aligned_cols=97 Identities=11% Similarity=0.201 Sum_probs=57.2
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceE-EEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEEe
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFR-VVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~-VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~~ 155 (435)
.+|.|.| +|.+|..++.+++... ++ |++++. +-+. .+.++++..+.+.-.++.. +
T Consensus 189 ~~VlI~g-~g~vG~~~~~lak~~G--~~~vi~~~~--s~~~-~~~~~~~g~~~v~~~~~~~---~--------------- 244 (367)
T cd08263 189 ETVAVIG-VGGVGSSAIQLAKAFG--ASPIIAVDV--RDEK-LAKAKELGATHTVNAAKED---A--------------- 244 (367)
T ss_pred CEEEEEC-CcHHHHHHHHHHHHcC--CCeEEEEeC--CHHH-HHHHHHhCCceEecCCccc---H---------------
Confidence 5788886 7999999999998863 45 555432 2233 2445666665543222111 1
Q ss_pred chhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCc-eeec
Q 013846 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD-IALA 198 (435)
Q Consensus 156 G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~-iaLA 198 (435)
.+.+.+......+|+|++.+.|.+.+...+..++.+-+ +.+.
T Consensus 245 -~~~l~~~~~~~~~d~vld~vg~~~~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 245 -VAAIREITGGRGVDVVVEALGKPETFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred -HHHHHHHhCCCCCCEEEEeCCCHHHHHHHHHHHhcCCEEEEEc
Confidence 11122233334589999998876567777777766544 3344
No 450
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=69.17 E-value=44 Score=32.28 Aligned_cols=30 Identities=17% Similarity=0.090 Sum_probs=24.4
Q ss_pred eeEEEEecCC--hHhHHHHHHHHhCCCceEEEEE
Q 013846 77 KPISVLGSTG--SIGTQTLDIVAEHEDKFRVVAL 108 (435)
Q Consensus 77 k~I~IlGSTG--SIG~qtLdVi~~~pd~f~VvaL 108 (435)
|.+.|.|+|+ -||..+-.-+.+. .++|+..
T Consensus 8 k~~lVTGas~~~GIG~aiA~~la~~--Ga~V~~~ 39 (271)
T PRK06505 8 KRGLIMGVANDHSIAWGIAKQLAAQ--GAELAFT 39 (271)
T ss_pred CEEEEeCCCCCCcHHHHHHHHHHhC--CCEEEEe
Confidence 6899999997 7999999988875 5667653
No 451
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=68.92 E-value=28 Score=29.56 Aligned_cols=46 Identities=13% Similarity=0.235 Sum_probs=37.3
Q ss_pred hHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcC
Q 013846 87 SIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRN 133 (435)
Q Consensus 87 SIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~ 133 (435)
.+|...+...-+. ..|+|+-|-.....+.+.+.+.+.+|++|+++.
T Consensus 13 ~lG~~~~~~~l~~-~G~~V~~lg~~~~~~~l~~~~~~~~pdvV~iS~ 58 (119)
T cd02067 13 DIGKNIVARALRD-AGFEVIDLGVDVPPEEIVEAAKEEDADAIGLSG 58 (119)
T ss_pred hHHHHHHHHHHHH-CCCEEEECCCCCCHHHHHHHHHHcCCCEEEEec
Confidence 3676666555543 589999998888899999999999999999864
No 452
>PRK09009 C factor cell-cell signaling protein; Provisional
Probab=68.75 E-value=7.5 Score=35.80 Aligned_cols=32 Identities=25% Similarity=0.337 Sum_probs=24.9
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEE
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVAL 108 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaL 108 (435)
++|+|.|+||.||.+...-+.+......|+++
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~ 32 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERYPDATVHAT 32 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhCCCCEEEEE
Confidence 37999999999999999988775434555543
No 453
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=68.55 E-value=39 Score=32.63 Aligned_cols=86 Identities=16% Similarity=0.186 Sum_probs=53.3
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEEec
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~~G 156 (435)
.+|.|.| +|++|..++.+.+.. ..+|++.+. +-+. .+.++++....+...+. .
T Consensus 157 ~~vlV~g-~g~vg~~~~q~a~~~--G~~vi~~~~--~~~~-~~~~~~~g~~~~~~~~~------------------~--- 209 (319)
T cd08242 157 DKVAVLG-DGKLGLLIAQVLALT--GPDVVLVGR--HSEK-LALARRLGVETVLPDEA------------------E--- 209 (319)
T ss_pred CEEEEEC-CCHHHHHHHHHHHHc--CCeEEEEcC--CHHH-HHHHHHcCCcEEeCccc------------------c---
Confidence 5899997 699999999999987 456666543 3333 34555565544332100 0
Q ss_pred hhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCcee
Q 013846 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (435)
Q Consensus 157 ~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ia 196 (435)
.....+|.+++.+.+-..+.-...+++.+-++.
T Consensus 210 -------~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~~v 242 (319)
T cd08242 210 -------SEGGGFDVVVEATGSPSGLELALRLVRPRGTVV 242 (319)
T ss_pred -------ccCCCCCEEEECCCChHHHHHHHHHhhcCCEEE
Confidence 112358999997655455666666776665544
No 454
>PRK05086 malate dehydrogenase; Provisional
Probab=68.44 E-value=7.2 Score=39.50 Aligned_cols=33 Identities=18% Similarity=0.264 Sum_probs=25.1
Q ss_pred eeEEEEecCChHhHHHHHHHHh-CCCceEEEEEe
Q 013846 77 KPISVLGSTGSIGTQTLDIVAE-HEDKFRVVALA 109 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~-~pd~f~VvaLa 109 (435)
+||+|+|+||.||.++.-.+.. .+...+++.+.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d 34 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYD 34 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEe
Confidence 4799999999999999877754 45555565554
No 455
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=68.24 E-value=38 Score=32.24 Aligned_cols=31 Identities=16% Similarity=0.070 Sum_probs=23.4
Q ss_pred CeeEEEEecCC--hHhHHHHHHHHhCCCceEEEEE
Q 013846 76 PKPISVLGSTG--SIGTQTLDIVAEHEDKFRVVAL 108 (435)
Q Consensus 76 ~k~I~IlGSTG--SIG~qtLdVi~~~pd~f~VvaL 108 (435)
.|.+.|.|+|+ -||..+-.-+.+. .++|+..
T Consensus 8 ~k~~lITGas~~~GIG~a~a~~la~~--G~~v~~~ 40 (260)
T PRK06603 8 GKKGLITGIANNMSISWAIAQLAKKH--GAELWFT 40 (260)
T ss_pred CcEEEEECCCCCcchHHHHHHHHHHc--CCEEEEE
Confidence 36899999996 5999988777765 5666543
No 456
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=68.21 E-value=69 Score=31.24 Aligned_cols=94 Identities=10% Similarity=0.119 Sum_probs=52.9
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcc-hHHHHHHHHhcCCCCceEEe
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNES-LLDEIKEALANVEEKPEILA 155 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~-~~~~l~~~l~~~~~~~~v~~ 155 (435)
.+|.|.|+ |++|..++.+.+.. ..+++..+. ++-+++ ++++++..+.+.-.++. ..+.+.
T Consensus 163 ~~VlI~g~-g~vg~~~~~la~~~--G~~~v~~~~-~~~~~~-~~~~~~g~~~~i~~~~~~~~~~~~-------------- 223 (341)
T cd08262 163 EVALVIGC-GPIGLAVIAALKAR--GVGPIVASD-FSPERR-ALALAMGADIVVDPAADSPFAAWA-------------- 223 (341)
T ss_pred CEEEEECC-CHHHHHHHHHHHHc--CCcEEEEEC-CCHHHH-HHHHHcCCcEEEcCCCcCHHHHHH--------------
Confidence 58999985 99999999999986 344443332 233443 35667776544322221 111111
Q ss_pred chhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcC
Q 013846 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAG 192 (435)
Q Consensus 156 G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~g 192 (435)
.+.+......+|+|++...+...+...+..++.+
T Consensus 224 ---~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~ 257 (341)
T cd08262 224 ---AELARAGGPKPAVIFECVGAPGLIQQIIEGAPPG 257 (341)
T ss_pred ---HHHHHhCCCCCCEEEECCCCHHHHHHHHHHhccC
Confidence 1112222345899999765433455556666554
No 457
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=68.11 E-value=52 Score=31.75 Aligned_cols=30 Identities=20% Similarity=0.131 Sum_probs=23.8
Q ss_pred CeeEEEEecCC--hHhHHHHHHHHhCCCceEEEE
Q 013846 76 PKPISVLGSTG--SIGTQTLDIVAEHEDKFRVVA 107 (435)
Q Consensus 76 ~k~I~IlGSTG--SIG~qtLdVi~~~pd~f~Vva 107 (435)
.|.+.|.|+++ -||..+..-+.+. .++|+.
T Consensus 6 ~k~~lITGas~~~GIG~aia~~la~~--G~~vil 37 (262)
T PRK07984 6 GKRILVTGVASKLSIAYGIAQAMHRE--GAELAF 37 (262)
T ss_pred CCEEEEeCCCCCccHHHHHHHHHHHC--CCEEEE
Confidence 36899999986 7999988888875 566664
No 458
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=67.96 E-value=5 Score=40.97 Aligned_cols=50 Identities=20% Similarity=0.272 Sum_probs=33.2
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhC-----CCceEEEEEeccCCHHHHHHHHHhh
Q 013846 75 GPKPISVLGSTGSIGTQTLDIVAEH-----EDKFRVVALAAGSNITLLADQVKRF 124 (435)
Q Consensus 75 ~~k~I~IlGSTGSIG~qtLdVi~~~-----pd~f~VvaLaa~~N~~~L~~q~~~f 124 (435)
.|+||+|+|++|.||.+++--+... ++..+++-+--+.|.+++..++.++
T Consensus 1 ~p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl 55 (322)
T cd01338 1 KPVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMEL 55 (322)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhh
Confidence 3679999999999999987765531 2233566665555665555555444
No 459
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=67.95 E-value=32 Score=35.96 Aligned_cols=107 Identities=18% Similarity=0.259 Sum_probs=63.8
Q ss_pred CCCCCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHH---HHHHHHH----hh------CCCEEEEcC--cch
Q 013846 72 TWDGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNIT---LLADQVK----RF------KPQVVAVRN--ESL 136 (435)
Q Consensus 72 ~~~~~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~---~L~~q~~----~f------~P~~v~v~~--e~~ 136 (435)
+|.++|+|.|+|.-|| |.+++..+.+....++|.+.=...+.. .|.+-++ .+ .++.|+++. ...
T Consensus 3 ~~~~~~~v~viG~G~s-G~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~~g~~~~~g~~~~~~~~~~d~vV~SpgI~~~ 81 (438)
T PRK04663 3 RWQGIKNVVVVGLGIT-GLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLPEDVELHSGGWNLEWLLEADLVVTNPGIALA 81 (438)
T ss_pred cccCCceEEEEeccHH-HHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhhcCCEEEeCCCChHHhccCCEEEECCCCCCC
Confidence 5677889999999985 999999999876568887754343322 2311000 01 256666643 223
Q ss_pred HHHHHHHHhcCCCCceEEechhHHHHHhcCCCCCEEEEecccccCcHHHHH
Q 013846 137 LDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVA 187 (435)
Q Consensus 137 ~~~l~~~l~~~~~~~~v~~G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~ 187 (435)
..+++.+.. .++.|+...|-+-++.. . =+.||+|..|=--|-.
T Consensus 82 ~p~~~~a~~---~gi~i~~~~el~~~~~~---~--~~I~VTGTnGKTTTt~ 124 (438)
T PRK04663 82 TPEIQQVLA---AGIPVVGDIELFAWAVD---K--PVIAITGSNGKSTVTD 124 (438)
T ss_pred CHHHHHHHH---CCCcEEEHHHHHHhhcC---C--CEEEEeCCCCHHHHHH
Confidence 345555432 34667655554434332 2 2669999999555443
No 460
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=67.92 E-value=45 Score=34.94 Aligned_cols=90 Identities=20% Similarity=0.324 Sum_probs=63.9
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcC-cchHHHHHHHHhcCCCCceEE
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRN-ESLLDEIKEALANVEEKPEIL 154 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~-e~~~~~l~~~l~~~~~~~~v~ 154 (435)
-++|+|.|.- -.|-.++.+.+..- .+|+|++-+. +++ +.++++.-+++..+. ++..+.++
T Consensus 167 G~~V~I~G~G-GlGh~avQ~Aka~g--a~Via~~~~~--~K~-e~a~~lGAd~~i~~~~~~~~~~~~------------- 227 (339)
T COG1064 167 GKWVAVVGAG-GLGHMAVQYAKAMG--AEVIAITRSE--EKL-ELAKKLGADHVINSSDSDALEAVK------------- 227 (339)
T ss_pred CCEEEEECCc-HHHHHHHHHHHHcC--CeEEEEeCCh--HHH-HHHHHhCCcEEEEcCCchhhHHhH-------------
Confidence 3699999998 56999999988763 8999998554 443 457888888887643 22211111
Q ss_pred echhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCceee
Q 013846 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIAL 197 (435)
Q Consensus 155 ~G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaL 197 (435)
. .+|.+++.++ -.-+.+.+.+++.|=++.+
T Consensus 228 ----------~--~~d~ii~tv~-~~~~~~~l~~l~~~G~~v~ 257 (339)
T COG1064 228 ----------E--IADAIIDTVG-PATLEPSLKALRRGGTLVL 257 (339)
T ss_pred ----------h--hCcEEEECCC-hhhHHHHHHHHhcCCEEEE
Confidence 1 1888888888 8888888888888765443
No 461
>KOG1221 consensus Acyl-CoA reductase [Lipid transport and metabolism]
Probab=67.80 E-value=27 Score=38.08 Aligned_cols=34 Identities=29% Similarity=0.427 Sum_probs=29.0
Q ss_pred CeeEEEEecCChHhHHHHH-HHHhCCCceEEEEEe
Q 013846 76 PKPISVLGSTGSIGTQTLD-IVAEHEDKFRVVALA 109 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLd-Vi~~~pd~f~VvaLa 109 (435)
-|+|.|.|+||+.|+-.++ ++|..||-.++..|-
T Consensus 12 ~k~i~vTG~tGFlgKVliEklLr~~p~v~~IYlLi 46 (467)
T KOG1221|consen 12 NKTIFVTGATGFLGKVLIEKLLRTTPDVKRIYLLI 46 (467)
T ss_pred CCeEEEEcccchhHHHHHHHHHhcCcCcceEEEEE
Confidence 4799999999999999987 556688988888884
No 462
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=67.54 E-value=17 Score=35.38 Aligned_cols=47 Identities=19% Similarity=0.358 Sum_probs=37.0
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccC---------CHHHHHHHHHhh
Q 013846 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGS---------NITLLADQVKRF 124 (435)
Q Consensus 75 ~~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~---------N~~~L~~q~~~f 124 (435)
..+||+|.| .|.||..+.+.+.++ ..+|++++-.+ |.+.|.+..+++
T Consensus 30 ~~~~v~I~G-~G~VG~~~a~~L~~~--g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~ 85 (227)
T cd01076 30 AGARVAIQG-FGNVGSHAARFLHEA--GAKVVAVSDSDGTIYNPDGLDVPALLAYKKEH 85 (227)
T ss_pred cCCEEEEEC-CCHHHHHHHHHHHHC--CCEEEEEECCCCeEECCCCCCHHHHHHHHHhc
Confidence 347999999 699999999999886 79999987543 677776665544
No 463
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=67.16 E-value=20 Score=32.91 Aligned_cols=17 Identities=53% Similarity=0.702 Sum_probs=14.1
Q ss_pred CeeEEEEecCChHhHHHH
Q 013846 76 PKPISVLGSTGSIGTQTL 93 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtL 93 (435)
.+.++|.|.||| |++|+
T Consensus 25 g~~i~I~G~tGS-GKTTl 41 (186)
T cd01130 25 RKNILISGGTGS-GKTTL 41 (186)
T ss_pred CCEEEEECCCCC-CHHHH
Confidence 457999999999 77774
No 464
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=67.09 E-value=50 Score=30.78 Aligned_cols=88 Identities=19% Similarity=0.292 Sum_probs=53.1
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEEe
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~~ 155 (435)
.++|.|+|++|.+|..+..+.+.. ..+|+.++... . .+.++++..+.+.-........
T Consensus 145 ~~~vlv~g~~g~~g~~~~~~a~~~--g~~v~~~~~~~---~-~~~~~~~g~~~~~~~~~~~~~~---------------- 202 (309)
T cd05289 145 GQTVLIHGAAGGVGSFAVQLAKAR--GARVIATASAA---N-ADFLRSLGADEVIDYTKGDFER---------------- 202 (309)
T ss_pred CCEEEEecCCchHHHHHHHHHHHc--CCEEEEEecch---h-HHHHHHcCCCEEEeCCCCchhh----------------
Confidence 468999999999999999998875 56777765322 2 2344666654433211111000
Q ss_pred chhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCC
Q 013846 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGK 193 (435)
Q Consensus 156 G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK 193 (435)
......+|.+++.+.|. .+...+.++..+-
T Consensus 203 -------~~~~~~~d~v~~~~~~~-~~~~~~~~l~~~g 232 (309)
T cd05289 203 -------AAAPGGVDAVLDTVGGE-TLARSLALVKPGG 232 (309)
T ss_pred -------ccCCCCceEEEECCchH-HHHHHHHHHhcCc
Confidence 11223588999875554 5566666665543
No 465
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=67.04 E-value=47 Score=32.13 Aligned_cols=87 Identities=13% Similarity=0.130 Sum_probs=54.7
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEEec
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~~G 156 (435)
.+|.|.| +|.+|..++.+.+.. .++|++++... +++ +.++++..+.+.-.++.
T Consensus 169 ~~vlV~g-~g~vg~~~~~la~~~--g~~v~~~~~~~--~~~-~~~~~~g~~~~~~~~~~--------------------- 221 (329)
T cd08298 169 QRLGLYG-FGASAHLALQIARYQ--GAEVFAFTRSG--EHQ-ELARELGADWAGDSDDL--------------------- 221 (329)
T ss_pred CEEEEEC-CcHHHHHHHHHHHHC--CCeEEEEcCCh--HHH-HHHHHhCCcEEeccCcc---------------------
Confidence 5788887 799999999988876 36777765432 333 44466665443221110
Q ss_pred hhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCceeec
Q 013846 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALA 198 (435)
Q Consensus 157 ~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLA 198 (435)
....+|.++....+...+...+..++.+-++.+.
T Consensus 222 --------~~~~vD~vi~~~~~~~~~~~~~~~l~~~G~~v~~ 255 (329)
T cd08298 222 --------PPEPLDAAIIFAPVGALVPAALRAVKKGGRVVLA 255 (329)
T ss_pred --------CCCcccEEEEcCCcHHHHHHHHHHhhcCCEEEEE
Confidence 0124788887644556778888888877665553
No 466
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=66.98 E-value=20 Score=28.57 Aligned_cols=35 Identities=26% Similarity=0.360 Sum_probs=23.7
Q ss_pred eeEEEEecCChHhHHHHH--HHHhCCCce-EEEEEeccC
Q 013846 77 KPISVLGSTGSIGTQTLD--IVAEHEDKF-RVVALAAGS 112 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLd--Vi~~~pd~f-~VvaLaa~~ 112 (435)
..+.|.|.+|| |++|+- ++....... .++.+++..
T Consensus 3 ~~~~l~G~~G~-GKTtl~~~l~~~~~~~~~~~~~~~~~~ 40 (148)
T smart00382 3 EVILIVGPPGS-GKTTLARALARELGPPGGGVIYIDGED 40 (148)
T ss_pred CEEEEECCCCC-cHHHHHHHHHhccCCCCCCEEEECCEE
Confidence 57999999998 888875 555554432 456655543
No 467
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=66.97 E-value=15 Score=34.83 Aligned_cols=42 Identities=19% Similarity=0.273 Sum_probs=31.1
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHh
Q 013846 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR 123 (435)
Q Consensus 78 ~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~ 123 (435)
||+|+|+||.+|+.....+.+. .++|... .++-+.+.++..+
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~--G~~V~v~--~r~~~~~~~l~~~ 43 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKA--GNKIIIG--SRDLEKAEEAAAK 43 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhC--CCEEEEE--EcCHHHHHHHHHH
Confidence 5999999999999998888876 3666543 4566666655544
No 468
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=66.84 E-value=26 Score=36.82 Aligned_cols=47 Identities=15% Similarity=0.196 Sum_probs=33.6
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCC
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKP 126 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P 126 (435)
.++|+|+|+ |.||..+...+..+. -.+|+. .+++.+...+.++++..
T Consensus 180 ~~~VlViGa-G~iG~~~a~~L~~~G-~~~V~v--~~rs~~ra~~la~~~g~ 226 (417)
T TIGR01035 180 GKKALLIGA-GEMGELVAKHLLRKG-VGKILI--ANRTYERAEDLAKELGG 226 (417)
T ss_pred CCEEEEECC-hHHHHHHHHHHHHCC-CCEEEE--EeCCHHHHHHHHHHcCC
Confidence 368999996 999999999998763 123332 25667777777777754
No 469
>PTZ00325 malate dehydrogenase; Provisional
Probab=66.73 E-value=10 Score=38.98 Aligned_cols=37 Identities=16% Similarity=0.172 Sum_probs=27.1
Q ss_pred CCCCCeeEEEEecCChHhHHHHHHHHhCCCceEEEEE
Q 013846 72 TWDGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVAL 108 (435)
Q Consensus 72 ~~~~~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaL 108 (435)
....|+||+|+|+.|.||....--+.......+++-+
T Consensus 4 ~~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~ 40 (321)
T PTZ00325 4 SALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLY 40 (321)
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEE
Confidence 3456889999999999999988877754433444443
No 470
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=66.69 E-value=37 Score=35.29 Aligned_cols=45 Identities=24% Similarity=0.403 Sum_probs=33.2
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhC
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFK 125 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~ 125 (435)
+++|+|+|+ |-+|.++...+++.. .+|+.. .++.+.+.+...++.
T Consensus 167 ~~~VlViGa-G~vG~~aa~~a~~lG--a~V~v~--d~~~~~~~~l~~~~g 211 (370)
T TIGR00518 167 PGDVTIIGG-GVVGTNAAKMANGLG--ATVTIL--DINIDRLRQLDAEFG 211 (370)
T ss_pred CceEEEEcC-CHHHHHHHHHHHHCC--CeEEEE--ECCHHHHHHHHHhcC
Confidence 467999988 999999999999874 355553 456677665555664
No 471
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=66.62 E-value=7.7 Score=35.38 Aligned_cols=32 Identities=41% Similarity=0.713 Sum_probs=25.6
Q ss_pred CeeEEEEecCChHhHHHHH--HHHhCCCceEEEEE
Q 013846 76 PKPISVLGSTGSIGTQTLD--IVAEHEDKFRVVAL 108 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLd--Vi~~~pd~f~VvaL 108 (435)
+|.|+|+|.+|| |+.||- +++++|++|..+..
T Consensus 2 ~r~ivl~Gpsg~-GK~~l~~~L~~~~~~~~~~~v~ 35 (183)
T PF00625_consen 2 RRPIVLVGPSGS-GKSTLAKRLIQEFPDKFGRVVS 35 (183)
T ss_dssp SSEEEEESSTTS-SHHHHHHHHHHHSTTTEEEEEE
T ss_pred CCEEEEECCCCC-CHHHHHHHHHHhccccccccee
Confidence 467999999999 888874 67889999964433
No 472
>PRK06523 short chain dehydrogenase; Provisional
Probab=66.60 E-value=8.1 Score=36.12 Aligned_cols=31 Identities=39% Similarity=0.389 Sum_probs=26.7
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLa 109 (435)
|+|.|.|+||.||.++.+-+.+. .++|+++.
T Consensus 10 k~vlItGas~gIG~~ia~~l~~~--G~~v~~~~ 40 (260)
T PRK06523 10 KRALVTGGTKGIGAATVARLLEA--GARVVTTA 40 (260)
T ss_pred CEEEEECCCCchhHHHHHHHHHC--CCEEEEEe
Confidence 68999999999999999988875 67887764
No 473
>PLN02702 L-idonate 5-dehydrogenase
Probab=66.60 E-value=78 Score=31.53 Aligned_cols=97 Identities=16% Similarity=0.219 Sum_probs=58.1
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEEec
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~~G 156 (435)
.+|.|+| .|++|..++.+.+...-+ .|++.. ++-+++ +.++++..+.+...++.. ..+.+
T Consensus 183 ~~vlI~g-~g~vG~~~~~~a~~~G~~-~v~~~~--~~~~~~-~~~~~~g~~~~~~~~~~~-~~~~~-------------- 242 (364)
T PLN02702 183 TNVLVMG-AGPIGLVTMLAARAFGAP-RIVIVD--VDDERL-SVAKQLGADEIVLVSTNI-EDVES-------------- 242 (364)
T ss_pred CEEEEEC-CCHHHHHHHHHHHHcCCC-EEEEEC--CCHHHH-HHHHHhCCCEEEecCccc-ccHHH--------------
Confidence 5899997 599999999999986322 133332 333443 367778776665432110 01111
Q ss_pred hhHHHHH--hcCCCCCEEEEecccccCcHHHHHHHHcCCce
Q 013846 157 EQGVIEA--ARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195 (435)
Q Consensus 157 ~egl~~l--~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~i 195 (435)
.+.++ .....+|+|++.+.+-..+...+..++.+-++
T Consensus 243 --~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~ 281 (364)
T PLN02702 243 --EVEEIQKAMGGGIDVSFDCVGFNKTMSTALEATRAGGKV 281 (364)
T ss_pred --HHHHHhhhcCCCCCEEEECCCCHHHHHHHHHHHhcCCEE
Confidence 11111 11235899999876667788888888776554
No 474
>KOG0455 consensus Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=66.49 E-value=22 Score=36.53 Aligned_cols=114 Identities=17% Similarity=0.272 Sum_probs=74.2
Q ss_pred eEEEEecCChHhHHHHHHHHhCCC-------ceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCC
Q 013846 78 PISVLGSTGSIGTQTLDIVAEHED-------KFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEK 150 (435)
Q Consensus 78 ~I~IlGSTGSIG~qtLdVi~~~pd-------~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~ 150 (435)
+|+|.|+ |-||...|+-|..+.. .|+||+++--... + .-+.|.|..+ -.+++..|....
T Consensus 5 nVa~~G~-G~vG~~lL~qi~~~~s~~~~~tv~~nvv~v~~~e~~--~--~skD~~p~nl-------~sewk~~L~~st-- 70 (364)
T KOG0455|consen 5 NVALMGC-GGVGRHLLQQIVSCRSLHAKMTVHINVVGVCDSESL--V--ASKDVLPENL-------NSEWKSELIKST-- 70 (364)
T ss_pred cEEEEec-cchHHHHHHHHHHHhhhhccCceEEEEEEEeccccc--c--cccccChhhh-------chHHHHHHHHhc--
Confidence 6888885 6699999998877654 7999998743221 1 2345555433 245665554321
Q ss_pred ceEEechhHH-HHHhcCCCCCEEEEecccccCcHHHHHHHHcCCceeecccceeeec
Q 013846 151 PEILAGEQGV-IEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAG 206 (435)
Q Consensus 151 ~~v~~G~egl-~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLANKESLV~a 206 (435)
..-+. -+.| ..++..+.+-++|+--+-..=...-..+++.|.-|+++||...-+-
T Consensus 71 ~~als-LdaLia~L~~sp~p~ilVDntaS~~ia~~y~Kfv~~gi~IatpNKKafss~ 126 (364)
T KOG0455|consen 71 GSALS-LDALIAKLLGSPTPLILVDNTASMEIAEIYMKFVDLGICIATPNKKAFSST 126 (364)
T ss_pred CCccc-HHHHHHHHcCCCCceEEEecccHHHHHHHHHHHHhcCceEecCCccccccc
Confidence 12333 2444 4477777788888766665555566789999999999999875443
No 475
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=66.47 E-value=45 Score=33.89 Aligned_cols=28 Identities=21% Similarity=0.215 Sum_probs=23.3
Q ss_pred CCeeEEEEecCChHhHHHHHHHHhCCCc
Q 013846 75 GPKPISVLGSTGSIGTQTLDIVAEHEDK 102 (435)
Q Consensus 75 ~~k~I~IlGSTGSIG~qtLdVi~~~pd~ 102 (435)
..-||.|-|-||.+|..-++.++.++-+
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~~~~~~g~~ 32 (286)
T TIGR01019 5 KDTKVIVQGITGSQGSFHTEQMLAYGTN 32 (286)
T ss_pred CCCcEEEecCCcHHHHHHHHHHHhCCCC
Confidence 3448999999999999999999986443
No 476
>PRK06223 malate dehydrogenase; Reviewed
Probab=66.37 E-value=12 Score=37.03 Aligned_cols=42 Identities=24% Similarity=0.332 Sum_probs=29.8
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHH
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQV 121 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~ 121 (435)
|+||+|+|+ |++|..+...+....-. +|+.+-- |-+++..+.
T Consensus 2 ~~KI~VIGa-G~vG~~ia~~la~~~~~-ev~L~D~--~~~~~~~~~ 43 (307)
T PRK06223 2 RKKISIIGA-GNVGATLAHLLALKELG-DVVLFDI--VEGVPQGKA 43 (307)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCe-EEEEEEC--CCchhHHHH
Confidence 578999999 99999999988875333 6665533 545554443
No 477
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=66.25 E-value=32 Score=36.28 Aligned_cols=58 Identities=21% Similarity=0.311 Sum_probs=46.3
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEec--cCCHHHHHHHHHhhCCCEEEEcC
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA--GSNITLLADQVKRFKPQVVAVRN 133 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa--~~N~~~L~~q~~~f~P~~v~v~~ 133 (435)
|-..++.|+||-=|.-+.|..+++.-+..+|-..- +-|.+++.+-...++|+.|+++.
T Consensus 91 Pgd~vLv~~~G~wg~ra~D~~~r~ga~V~~v~~~~G~~~~le~i~~~lsqh~p~~vfv~h 150 (385)
T KOG2862|consen 91 PGDNVLVVSTGTWGQRAADCARRYGAEVDVVEADIGQAVPLEEITEKLSQHKPKAVFVTH 150 (385)
T ss_pred CCCeEEEEEechHHHHHHHHHHhhCceeeEEecCcccCccHHHHHHHHHhcCCceEEEEe
Confidence 44567889999999999999999955555553322 56889999999999999999964
No 478
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=66.11 E-value=64 Score=30.75 Aligned_cols=48 Identities=15% Similarity=0.061 Sum_probs=33.1
Q ss_pred CeeEEEEecC--ChHhHHHHHHHHhCCCceEEEEEec-cCCHHHHHHHHHhhC
Q 013846 76 PKPISVLGST--GSIGTQTLDIVAEHEDKFRVVALAA-GSNITLLADQVKRFK 125 (435)
Q Consensus 76 ~k~I~IlGST--GSIG~qtLdVi~~~pd~f~VvaLaa-~~N~~~L~~q~~~f~ 125 (435)
.|.++|.|++ +-||..+..-+.+. .++|+...- .++.+.+.+...+.+
T Consensus 7 ~k~~lItGa~~s~GIG~aia~~la~~--G~~v~~~~r~~~~~~~~~~~~~~~~ 57 (257)
T PRK08594 7 GKTYVVMGVANKRSIAWGIARSLHNA--GAKLVFTYAGERLEKEVRELADTLE 57 (257)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHC--CCEEEEecCcccchHHHHHHHHHcC
Confidence 3789999997 89999988888875 566665421 134456666666553
No 479
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=65.47 E-value=43 Score=33.48 Aligned_cols=45 Identities=11% Similarity=0.200 Sum_probs=29.9
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f 124 (435)
+||+|+|+ |.+|..+.--+....-..+|+.+ ..|.+++..++.++
T Consensus 1 ~kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~--D~~~~~~~~~a~dL 45 (306)
T cd05291 1 RKVVIIGA-GHVGSSFAYSLVNQGIADELVLI--DINEEKAEGEALDL 45 (306)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEE--eCCcchhhHhHhhH
Confidence 47999996 88999999888776533345443 24566665554443
No 480
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=65.43 E-value=35 Score=33.96 Aligned_cols=75 Identities=20% Similarity=0.328 Sum_probs=49.4
Q ss_pred HHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEEechhHH---HHH-hcCCCC
Q 013846 94 DIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGV---IEA-ARHPDA 169 (435)
Q Consensus 94 dVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~~G~egl---~~l-~~~~~~ 169 (435)
+.+++. +.|+++|.+ .|.+....++++|+|+.+.+-. .+.+.+|+ .++ .+..++
T Consensus 18 ~yv~~~-~gF~~vg~A--~~~~ea~~~i~~~~pDLILLDi-------------------YmPd~~Gi~lL~~ir~~~~~~ 75 (224)
T COG4565 18 RYVKQI-PGFSVVGTA--GTLEEAKMIIEEFKPDLILLDI-------------------YMPDGNGIELLPELRSQHYPV 75 (224)
T ss_pred HHHHhC-CCceEEEee--ccHHHHHHHHHhhCCCEEEEee-------------------ccCCCccHHHHHHHHhcCCCC
Confidence 445555 469999988 5788999999999999987621 11222332 222 345567
Q ss_pred CEEEEecccccCcHHHHHHHHcC
Q 013846 170 VTVVTGIVGCAGLKPTVAAIEAG 192 (435)
Q Consensus 170 D~Vv~AIvG~aGL~pt~~Ai~~g 192 (435)
|+++ |+-+.-..-.-.|++.|
T Consensus 76 DVI~--iTAA~d~~tI~~alr~G 96 (224)
T COG4565 76 DVIV--ITAASDMETIKEALRYG 96 (224)
T ss_pred CEEE--EeccchHHHHHHHHhcC
Confidence 7766 34455677777888877
No 481
>TIGR01500 sepiapter_red sepiapterin reductase. This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.
Probab=65.41 E-value=27 Score=32.94 Aligned_cols=45 Identities=16% Similarity=0.077 Sum_probs=31.3
Q ss_pred eEEEEecCChHhHHHHHHHHhC--CCceEEEEEeccCCHHHHHHHHHhh
Q 013846 78 PISVLGSTGSIGTQTLDIVAEH--EDKFRVVALAAGSNITLLADQVKRF 124 (435)
Q Consensus 78 ~I~IlGSTGSIG~qtLdVi~~~--pd~f~VvaLaa~~N~~~L~~q~~~f 124 (435)
.+.|.|+||.||..+..-+.+. ...++|+.+ ++|.+.+.+.+.+.
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~~~g~~V~~~--~r~~~~~~~~~~~l 48 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLKSPGSVLVLS--ARNDEALRQLKAEI 48 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhccCCcEEEEE--EcCHHHHHHHHHHH
Confidence 4789999999999988877652 135777665 45666666555544
No 482
>PRK12320 hypothetical protein; Provisional
Probab=65.31 E-value=7.9 Score=43.89 Aligned_cols=30 Identities=23% Similarity=0.316 Sum_probs=26.1
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEe
Q 013846 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (435)
Q Consensus 78 ~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLa 109 (435)
||.|.|+||+||....+-+.+. .++|+++.
T Consensus 2 kILVTGAaGFIGs~La~~Ll~~--G~~Vi~ld 31 (699)
T PRK12320 2 QILVTDATGAVGRSVTRQLIAA--GHTVSGIA 31 (699)
T ss_pred EEEEECCCCHHHHHHHHHHHhC--CCEEEEEe
Confidence 6999999999999999987764 57888887
No 483
>KOG4354 consensus N-acetyl-gamma-glutamyl-phosphate reductase [Amino acid transport and metabolism]
Probab=65.31 E-value=9.8 Score=38.85 Aligned_cols=67 Identities=19% Similarity=0.339 Sum_probs=46.5
Q ss_pred HHHHhcCCC--------CCCCcccccchhhhhhhhHhHhHhhhhcCCCCCceEEEEcCCcceeEEEEecCCcEEEecCC
Q 013846 268 VADALKHPN--------WSMGKKITVDSATLFNKGLEVIEAHYLFGAEYDNIEIIIHPQSIIHSMVETQDSSVIGQLGW 338 (435)
Q Consensus 268 ~~dALkHP~--------W~MG~KITIDSATmmNKgLEvIEA~~LF~i~~d~I~vvIHPqSiIHsmVef~DGSv~Aqls~ 338 (435)
.++-+|||+ |--|--.||. -=|-|++..=|-|.|+.-.||+=+ +||=+-=| -+|.=.-||-..+||-
T Consensus 216 Is~r~k~~VaF~PHv~qwfqGi~lTi~--vpmkksv~~~elr~lyk~~YedE~-lvhV~ddv-Plvkdv~gsh~v~~gg 290 (340)
T KOG4354|consen 216 ISQRSKVTVAFTPHVMQWFQGIQLTIY--VPMKKSVRTEELRQLYKTSYEDEE-LVHVLDDV-PLVKDVRGSHYVHMGG 290 (340)
T ss_pred HHHhhCCceeechhHHHHhhhceEEEE--EeecCcccHHHHHHHHHhhccCcc-eeeeeccc-cceeccCCcceeEecc
Confidence 456788885 7777776664 347889999999999999998843 34433322 2445566888888873
No 484
>PRK10083 putative oxidoreductase; Provisional
Probab=65.23 E-value=62 Score=31.53 Aligned_cols=95 Identities=16% Similarity=0.182 Sum_probs=57.0
Q ss_pred eeEEEEecCChHhHHHHHHHHh-CCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEEe
Q 013846 77 KPISVLGSTGSIGTQTLDIVAE-HEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~-~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~~ 155 (435)
.+|.|.| .|++|..++.+.+. .. .+++..+. ++-+++ ++++++..+.+.-..+. .+.+.+.
T Consensus 162 ~~vlI~g-~g~vG~~~~~~a~~~~G--~~~v~~~~-~~~~~~-~~~~~~Ga~~~i~~~~~---~~~~~~~---------- 223 (339)
T PRK10083 162 DVALIYG-AGPVGLTIVQVLKGVYN--VKAVIVAD-RIDERL-ALAKESGADWVINNAQE---PLGEALE---------- 223 (339)
T ss_pred CEEEEEC-CCHHHHHHHHHHHHhCC--CCEEEEEc-CCHHHH-HHHHHhCCcEEecCccc---cHHHHHh----------
Confidence 4899999 69999999999885 33 33222232 333443 56677887665432211 1222110
Q ss_pred chhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCceee
Q 013846 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIAL 197 (435)
Q Consensus 156 G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaL 197 (435)
+ ...++|+|+++..+-..+...+.+++.+-++.+
T Consensus 224 ~--------~g~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~ 257 (339)
T PRK10083 224 E--------KGIKPTLIIDAACHPSILEEAVTLASPAARIVL 257 (339)
T ss_pred c--------CCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 0 112478999987655667888888877665543
No 485
>TIGR03013 EpsB_2 sugar transferase, PEP-CTERM system associated. Members of this protein family belong to the family of bacterial sugar transferases (pfam02397). Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria (notable exceptions appear to include Magnetococcus sp. MC-1 and Myxococcus xanthus DK 1622 ). These genes are generally found near one or more of the PrsK, PrsR or PrsT genes that have been related to the PEP-CTERM system by phylogenetic profiling methods. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species. These proteins are homologs of the EpsB protien found in Methylobacillus sp. strain 12S, which is also associated with a PEP-CTERM system, but of a distinct type. A name which appears attached to a number of genes (by transitive annotation) in this family is "undecapre
Probab=65.12 E-value=57 Score=34.40 Aligned_cols=59 Identities=17% Similarity=0.231 Sum_probs=46.2
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCC-ceEEEEEec-------------cCCHHHHHHHHHhhCCCEEEEcCcc
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHED-KFRVVALAA-------------GSNITLLADQVKRFKPQVVAVRNES 135 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd-~f~VvaLaa-------------~~N~~~L~~q~~~f~P~~v~v~~e~ 135 (435)
.+++.|+|+ |.-|.+..+..+++|+ .|+++|+.. ..+.+.+.+.+++.+.+.|.++.+.
T Consensus 124 ~rrvLIIGa-g~~~~~L~~l~~~~~~~g~~vVGfi~~dd~~~~i~gvpVlG~~~dl~~~v~~~~Id~ViIAlp~ 196 (442)
T TIGR03013 124 KRRILVLGT-GPRAREIARLRRSSDRRGHEIVGFVPLPDEPAYVPSEHVIENGDGLVEYVLRHRIDEIVIALDE 196 (442)
T ss_pred CCcEEEEEC-CHHHHHHHHHHHhCccCCeEEEEEEcCCccccccCCCcccCCHHHHHHHHHhCCCCEEEEECch
Confidence 478999986 5668888777766665 799999872 1367889999999999999987653
No 486
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=65.07 E-value=1.3e+02 Score=28.59 Aligned_cols=93 Identities=20% Similarity=0.274 Sum_probs=53.5
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEE-cCcchHHHHHHHHhcCCCCceEE
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAV-RNESLLDEIKEALANVEEKPEIL 154 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v-~~e~~~~~l~~~l~~~~~~~~v~ 154 (435)
.++|.|.|++|.||..+..+.+.. .++|+..+ ++-+.+ +.++++..+.+.- .++.....
T Consensus 167 ~~~vlI~g~~~~iG~~~~~~~~~~--g~~v~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--------------- 226 (342)
T cd08266 167 GETVLVHGAGSGVGSAAIQIAKLF--GATVIATA--GSEDKL-ERAKELGADYVIDYRKEDFVRE--------------- 226 (342)
T ss_pred CCEEEEECCCchHHHHHHHHHHHc--CCEEEEEe--CCHHHH-HHHHHcCCCeEEecCChHHHHH---------------
Confidence 368999999999999999999987 45665543 333443 3345555544321 11111111
Q ss_pred echhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCc
Q 013846 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD 194 (435)
Q Consensus 155 ~G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ 194 (435)
+.+......+|++++.+.+ ..+...+..++.+-+
T Consensus 227 -----~~~~~~~~~~d~~i~~~g~-~~~~~~~~~l~~~G~ 260 (342)
T cd08266 227 -----VRELTGKRGVDVVVEHVGA-ATWEKSLKSLARGGR 260 (342)
T ss_pred -----HHHHhCCCCCcEEEECCcH-HHHHHHHHHhhcCCE
Confidence 1222223358999987544 455666666555433
No 487
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=64.84 E-value=72 Score=28.62 Aligned_cols=86 Identities=14% Similarity=0.120 Sum_probs=56.5
Q ss_pred hHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCc-----chHHHHHHHHhcCCC-CceEEec---h
Q 013846 87 SIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNE-----SLLDEIKEALANVEE-KPEILAG---E 157 (435)
Q Consensus 87 SIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e-----~~~~~l~~~l~~~~~-~~~v~~G---~ 157 (435)
-||.+.+...-+. ..|+|+-+......+...+.+++.+|+.++++.- +....+.+.|...+. ++.++.| .
T Consensus 16 d~g~~iv~~~l~~-~GfeVi~lg~~~s~e~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~ 94 (132)
T TIGR00640 16 DRGAKVIATAYAD-LGFDVDVGPLFQTPEEIARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGGVIP 94 (132)
T ss_pred HHHHHHHHHHHHh-CCcEEEECCCCCCHHHHHHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCC
Confidence 4788877776654 5899999999999999999999999999999652 122334444433222 4667777 2
Q ss_pred h-HHHHHhcCCCCCEEEE
Q 013846 158 Q-GVIEAARHPDAVTVVT 174 (435)
Q Consensus 158 e-gl~~l~~~~~~D~Vv~ 174 (435)
+ -..++. ...+|-++.
T Consensus 95 ~~~~~~l~-~~Gvd~~~~ 111 (132)
T TIGR00640 95 PQDFDELK-EMGVAEIFG 111 (132)
T ss_pred hHhHHHHH-HCCCCEEEC
Confidence 2 233333 335665554
No 488
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=64.63 E-value=4.3 Score=37.41 Aligned_cols=97 Identities=21% Similarity=0.160 Sum_probs=50.6
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEEe
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~~ 155 (435)
||||.++|.+|| |+.||-=.-.. ....--.-|+-+|..+.+-. +..|-+.+..
T Consensus 1 MkrimliG~~g~-GKTTL~q~L~~------------~~~~~~KTq~i~~~~~~IDT--PGEyiE~~~~------------ 53 (143)
T PF10662_consen 1 MKRIMLIGPSGS-GKTTLAQALNG------------EEIRYKKTQAIEYYDNTIDT--PGEYIENPRF------------ 53 (143)
T ss_pred CceEEEECCCCC-CHHHHHHHHcC------------CCCCcCccceeEecccEEEC--ChhheeCHHH------------
Confidence 799999999999 99988544332 11111133556666544322 2222222211
Q ss_pred chhHHHHHhcCCCCCEEEEec---ccccCcHHHHHHHHcCCceeecccce
Q 013846 156 GEQGVIEAARHPDAVTVVTGI---VGCAGLKPTVAAIEAGKDIALANKET 202 (435)
Q Consensus 156 G~egl~~l~~~~~~D~Vv~AI---vG~aGL~pt~~Ai~~gK~iaLANKES 202 (435)
-.+|...+ .++|+|+.-. ....=..|-++-.=+..-|++-+|==
T Consensus 54 -y~aLi~ta--~dad~V~ll~dat~~~~~~pP~fa~~f~~pvIGVITK~D 100 (143)
T PF10662_consen 54 -YHALIVTA--QDADVVLLLQDATEPRSVFPPGFASMFNKPVIGVITKID 100 (143)
T ss_pred -HHHHHHHH--hhCCEEEEEecCCCCCccCCchhhcccCCCEEEEEECcc
Confidence 13344343 3577665444 44444566666554445566665543
No 489
>PRK08419 lipid A biosynthesis lauroyl acyltransferase; Reviewed
Probab=64.56 E-value=42 Score=33.19 Aligned_cols=103 Identities=16% Similarity=0.135 Sum_probs=58.0
Q ss_pred EEEEEecc-CCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEEechhHHHHHhcCCCCCEEEEecccccCc
Q 013846 104 RVVALAAG-SNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGL 182 (435)
Q Consensus 104 ~VvaLaa~-~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~~G~egl~~l~~~~~~D~Vv~AIvG~aGL 182 (435)
-|+.+++| .|+|.+......+.++..++..+.....+...+ .+.-+.....++ ..-.|+
T Consensus 114 gvI~~t~H~GnwE~~~~~l~~~~~~~~~v~~~~~n~~~~~~~----------------~~~R~~~g~~~i----~~~~~~ 173 (298)
T PRK08419 114 PIIVTTAHYGYWELFSLALAAYYGAVSIVGRLLKSAPINEMI----------------SKRREQFGIELI----DKKGAM 173 (298)
T ss_pred CEEEEeeCccHHHHHHHHHHhcCCCeEEEEeCCCChHHHHHH----------------HHHHHHcCCeeE----ECccHH
Confidence 36677776 789887655555554555553322222222211 111111122222 233468
Q ss_pred HHHHHHHHcCCceeecc------cceeee--------ccccchHHhhhcCCeEeeccc
Q 013846 183 KPTVAAIEAGKDIALAN------KETLIA--------GGPFVLPLAHKHNIKILPADS 226 (435)
Q Consensus 183 ~pt~~Ai~~gK~iaLAN------KESLV~--------aG~lv~~~a~~~~~~IiPVDS 226 (435)
...+.+++.|..|++.. ++.+.+ -=...-.+|+++|+.|+||-.
T Consensus 174 r~~l~~Lk~g~~v~il~Dq~~~~~~gv~v~FfG~~a~~~~g~a~LA~k~~apvvpv~~ 231 (298)
T PRK08419 174 KELLKALKQGRALGILVDQNVVPKEGVEVKFFNKRVTHTTIASILARRYNALIIPVFI 231 (298)
T ss_pred HHHHHHHHcCCeEEEEecCCCCCCCCeEEecCCCCcccchhHHHHHHHHCCCEEEEEE
Confidence 88899999999888874 444432 112234578899999999965
No 490
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=64.35 E-value=74 Score=32.23 Aligned_cols=98 Identities=16% Similarity=0.117 Sum_probs=56.3
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCce-EEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEEe
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKF-RVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f-~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~~ 155 (435)
.+|.|.| .|++|..++.+.+... . .|++++. +-++ .+.++++..+.+.-..+..-..+
T Consensus 205 ~~VlV~g-~g~vG~~ai~lA~~~G--~~~vi~~~~--~~~~-~~~~~~~g~~~~v~~~~~~~~~~--------------- 263 (384)
T cd08265 205 AYVVVYG-AGPIGLAAIALAKAAG--ASKVIAFEI--SEER-RNLAKEMGADYVFNPTKMRDCLS--------------- 263 (384)
T ss_pred CEEEEEC-CCHHHHHHHHHHHHcC--CCEEEEEcC--CHHH-HHHHHHcCCCEEEcccccccccH---------------
Confidence 5899997 5999999999999874 4 4555432 3333 36777887766542221100001
Q ss_pred chhHHHHHhcCCCCCEEEEeccc-ccCcHHHHHHHHcCCcee
Q 013846 156 GEQGVIEAARHPDAVTVVTGIVG-CAGLKPTVAAIEAGKDIA 196 (435)
Q Consensus 156 G~egl~~l~~~~~~D~Vv~AIvG-~aGL~pt~~Ai~~gK~ia 196 (435)
.+.+.++.....+|+|+++..+ .+.+...+..++.+-++.
T Consensus 264 -~~~v~~~~~g~gvDvvld~~g~~~~~~~~~~~~l~~~G~~v 304 (384)
T cd08265 264 -GEKVMEVTKGWGADIQVEAAGAPPATIPQMEKSIAINGKIV 304 (384)
T ss_pred -HHHHHHhcCCCCCCEEEECCCCcHHHHHHHHHHHHcCCEEE
Confidence 1122333333458999998443 234566667776654443
No 491
>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=64.33 E-value=81 Score=29.71 Aligned_cols=91 Identities=16% Similarity=0.190 Sum_probs=55.2
Q ss_pred CeeEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEEe
Q 013846 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~~ 155 (435)
..++.|.|++|.+|..++.+.+.. ..+|.+.+ +. +.+ +.++++..+.+.-.... +.
T Consensus 145 ~~~vli~g~~~~~g~~~~~~a~~~--g~~v~~~~--~~-~~~-~~~~~~g~~~~~~~~~~----~~-------------- 200 (326)
T cd08272 145 GQTVLIHGGAGGVGHVAVQLAKAA--GARVYATA--SS-EKA-AFARSLGADPIIYYRET----VV-------------- 200 (326)
T ss_pred CCEEEEEcCCCcHHHHHHHHHHHc--CCEEEEEe--ch-HHH-HHHHHcCCCEEEecchh----HH--------------
Confidence 468999999999999999999887 45666654 22 433 33456665443321111 11
Q ss_pred chhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCC
Q 013846 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGK 193 (435)
Q Consensus 156 G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK 193 (435)
+.+.++.....+|.+++.+.| ..+...+.++..+-
T Consensus 201 --~~~~~~~~~~~~d~v~~~~~~-~~~~~~~~~l~~~g 235 (326)
T cd08272 201 --EYVAEHTGGRGFDVVFDTVGG-ETLDASFEAVALYG 235 (326)
T ss_pred --HHHHHhcCCCCCcEEEECCCh-HHHHHHHHHhccCC
Confidence 122223333358999998776 45666666665543
No 492
>PRK08618 ornithine cyclodeaminase; Validated
Probab=64.30 E-value=56 Score=33.10 Aligned_cols=33 Identities=21% Similarity=0.146 Sum_probs=22.7
Q ss_pred HHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCcee
Q 013846 160 VIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (435)
Q Consensus 160 l~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ia 196 (435)
+.++++ ++|+|+++.....-+.. +.++.|+-|.
T Consensus 186 ~~~~~~--~aDiVi~aT~s~~p~i~--~~l~~G~hV~ 218 (325)
T PRK08618 186 ADEAIE--EADIIVTVTNAKTPVFS--EKLKKGVHIN 218 (325)
T ss_pred HHHHHh--cCCEEEEccCCCCcchH--HhcCCCcEEE
Confidence 344443 68999999876654443 8888888763
No 493
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=64.22 E-value=24 Score=34.05 Aligned_cols=70 Identities=24% Similarity=0.330 Sum_probs=41.8
Q ss_pred CeeEEEEecCChHhHHHH--HHHHhCCCc-eEEEEE-------------------eccCCHHHHHHHHHhhCCCEEEEc-
Q 013846 76 PKPISVLGSTGSIGTQTL--DIVAEHEDK-FRVVAL-------------------AAGSNITLLADQVKRFKPQVVAVR- 132 (435)
Q Consensus 76 ~k~I~IlGSTGSIG~qtL--dVi~~~pd~-f~VvaL-------------------aa~~N~~~L~~q~~~f~P~~v~v~- 132 (435)
.+.|.|.|.||| |+.|+ ..+...|+. .+++.+ ....+.+.+.+.+.+-+|+++++.
T Consensus 127 ~~~ili~G~tGS-GKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigE 205 (270)
T PF00437_consen 127 RGNILISGPTGS-GKTTLLNALLEEIPPEDERIVTIEDPPELRLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGE 205 (270)
T ss_dssp TEEEEEEESTTS-SHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESC
T ss_pred ceEEEEECCCcc-ccchHHHHHhhhccccccceEEeccccceeecccceEEEEeecCcccHHHHHHHHhcCCCCcccccc
Confidence 478999999999 77765 233444444 343332 124567777788888888888874
Q ss_pred --CcchHHHHHHHHhc
Q 013846 133 --NESLLDEIKEALAN 146 (435)
Q Consensus 133 --~e~~~~~l~~~l~~ 146 (435)
+.+.+..++....+
T Consensus 206 iR~~e~~~~~~a~~tG 221 (270)
T PF00437_consen 206 IRDPEAAEAIQAANTG 221 (270)
T ss_dssp E-SCHHHHHHHHHHTT
T ss_pred cCCHhHHHHHHhhccC
Confidence 34444444444433
No 494
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=64.20 E-value=23 Score=32.94 Aligned_cols=128 Identities=17% Similarity=0.210 Sum_probs=80.0
Q ss_pred hHhHHHHHHHHhCCCceEEEEEec-cCCHHHHHHHHHh-hCCC-EEEEcCcchHHHHHHHHhcCCCC---ceEEec----
Q 013846 87 SIGTQTLDIVAEHEDKFRVVALAA-GSNITLLADQVKR-FKPQ-VVAVRNESLLDEIKEALANVEEK---PEILAG---- 156 (435)
Q Consensus 87 SIG~qtLdVi~~~pd~f~VvaLaa-~~N~~~L~~q~~~-f~P~-~v~v~~e~~~~~l~~~l~~~~~~---~~v~~G---- 156 (435)
.||.+|-+.++++ .|+..-+.. ..+.+.|.+...+ ..++ .+.+..+.....|.+.|...+.. ..++--
T Consensus 78 avG~~Ta~~l~~~--G~~~~~~~~~~~~s~~L~~~l~~~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~ 155 (231)
T PF02602_consen 78 AVGPKTAEALREY--GFQPDFVPSSEGSSEGLAELLKEQLRGKRVLILRGEGGRPDLPEKLREAGIEVTEVIVYETPPEE 155 (231)
T ss_dssp ESSHHHHHHHHHT--T-EECEE-TTSSSHHHHHGGHHHCCTTEEEEEEESSSSCHHHHHHHHHTTEEEEEEECEEEEEHH
T ss_pred EEcHHHHHHHHHc--CCCccccCCCCCCHHHHHHHHHhhCCCCeEEEEcCCCccHHHHHHHHHCCCeEEEEEEeeccccc
Confidence 6799999999998 688765655 6677888776664 5554 55556666667777777544422 112221
Q ss_pred -hhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCceeecccceeeeccccchHHhhhcCCe
Q 013846 157 -EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIK 220 (435)
Q Consensus 157 -~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~iaLANKESLV~aG~lv~~~a~~~~~~ 220 (435)
.+.+.+.....++|.|+..-.- +....+..++... .+-+.=.+||-|+-..+.+++.|.+
T Consensus 156 ~~~~~~~~l~~~~~~~v~ftS~~--~~~~~~~~~~~~~--~~~~~~~~~~ig~~ta~~l~~~g~~ 216 (231)
T PF02602_consen 156 LSPELKEALDRGEIDAVVFTSPS--AVRAFLELLKKNG--ALLKRVPIVAIGPRTAKALRELGFK 216 (231)
T ss_dssp HHHHHHHHHHHTTTSEEEESSHH--HHHHHHHHSSGHH--HHHTTSEEEESSHHHHHHHHHTT-S
T ss_pred chHHHHHHHHcCCCCEEEECCHH--HHHHHHHHhHhhh--hhhhCCEEEEECHHHHHHHHHcCCC
Confidence 2345555555678998876443 2333333333222 4445567899999999999998865
No 495
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=64.18 E-value=19 Score=29.02 Aligned_cols=49 Identities=14% Similarity=0.242 Sum_probs=36.5
Q ss_pred eEEEEecCChHhHHHHHHHHhCC-CceEEEEEeccCCHHHHHHHHHhhCCCE
Q 013846 78 PISVLGSTGSIGTQTLDIVAEHE-DKFRVVALAAGSNITLLADQVKRFKPQV 128 (435)
Q Consensus 78 ~I~IlGSTGSIG~qtLdVi~~~p-d~f~VvaLaa~~N~~~L~~q~~~f~P~~ 128 (435)
||+|+ .+|.+|++.+.-+.++. ...+|.- ...+|-+++.+..+++....
T Consensus 1 kI~iI-G~G~mg~al~~~l~~~g~~~~~v~~-~~~r~~~~~~~~~~~~~~~~ 50 (96)
T PF03807_consen 1 KIGII-GAGNMGSALARGLLASGIKPHEVII-VSSRSPEKAAELAKEYGVQA 50 (96)
T ss_dssp EEEEE-STSHHHHHHHHHHHHTTS-GGEEEE-EEESSHHHHHHHHHHCTTEE
T ss_pred CEEEE-CCCHHHHHHHHHHHHCCCCceeEEe-eccCcHHHHHHHHHhhcccc
Confidence 68999 68999999999888774 2344543 33688899988888887443
No 496
>PLN02828 formyltetrahydrofolate deformylase
Probab=64.15 E-value=64 Score=32.65 Aligned_cols=142 Identities=16% Similarity=0.213 Sum_probs=83.6
Q ss_pred CCCeeEEEEecCChHhHHHHHHHHhCCC---ceEEEEEeccCC---HHHHHHHHHhhCCCEEEEcCc--ch-HHHHHHHH
Q 013846 74 DGPKPISVLGSTGSIGTQTLDIVAEHED---KFRVVALAAGSN---ITLLADQVKRFKPQVVAVRNE--SL-LDEIKEAL 144 (435)
Q Consensus 74 ~~~k~I~IlGSTGSIG~qtLdVi~~~pd---~f~VvaLaa~~N---~~~L~~q~~~f~P~~v~v~~e--~~-~~~l~~~l 144 (435)
+.++||+||.|.. |++..+++.+... +.+|+++..++. -..+.+.+++++-.+.++... +. .+++.+.+
T Consensus 68 ~~~~riavlvSg~--g~nl~~ll~~~~~g~l~~eI~~ViSn~~~~~~a~~~~~A~~~gIP~~~~~~~~~~~~e~~~~~~l 145 (268)
T PLN02828 68 DPKYKIAVLASKQ--DHCLIDLLHRWQDGRLPVDITCVISNHERGPNTHVMRFLERHGIPYHYLPTTKENKREDEILELV 145 (268)
T ss_pred CCCcEEEEEEcCC--ChhHHHHHHhhhcCCCCceEEEEEeCCCCCCCchHHHHHHHcCCCEEEeCCCCCCCHHHHHHHHH
Confidence 3467999999876 8888888876532 468888876541 225667789998887765321 11 12233333
Q ss_pred hcCCCCceEEechhHHHH--HhcCCCCCEEEE----ecccccCcHHHHHHHHcCCce-----eecccceeeeccccchHH
Q 013846 145 ANVEEKPEILAGEQGVIE--AARHPDAVTVVT----GIVGCAGLKPTVAAIEAGKDI-----ALANKETLIAGGPFVLPL 213 (435)
Q Consensus 145 ~~~~~~~~v~~G~egl~~--l~~~~~~D~Vv~----AIvG~aGL~pt~~Ai~~gK~i-----aLANKESLV~aG~lv~~~ 213 (435)
. +.+.-|+.|---+.- +++.. ..-++| -+-.+-|..|...|+++|-++ =..+.| +-.|++|.+
T Consensus 146 ~--~~DliVLAgym~IL~~~~l~~~-~~riINIHpSlLP~f~Ga~p~~~Ai~~Gvk~tG~TvH~V~~~--lD~GpII~Q- 219 (268)
T PLN02828 146 K--GTDFLVLARYMQILSGNFLKGY-GKDIINIHHGLLPSFKGGNPSKQAFDAGVKLIGATSHFVTEE--LDAGPIIEQ- 219 (268)
T ss_pred h--cCCEEEEeeehHhCCHHHHhhc-cCCEEEecCccCCCCCCCcHHHHHHHcCCCeEEEEEEEEcCC--CCCCCeeEE-
Confidence 2 133445544322111 12211 123454 256788999999999998442 233433 356888755
Q ss_pred hhhcCCeEeecccchh
Q 013846 214 AHKHNIKILPADSEHS 229 (435)
Q Consensus 214 a~~~~~~IiPVDSEHs 229 (435)
..+|||...+
T Consensus 220 ------~~v~V~~~dt 229 (268)
T PLN02828 220 ------MVERVSHRDN 229 (268)
T ss_pred ------EEEecCCCCC
Confidence 5778876554
No 497
>PLN02640 glucose-6-phosphate 1-dehydrogenase
Probab=63.84 E-value=11 Score=41.90 Aligned_cols=55 Identities=18% Similarity=0.190 Sum_probs=34.6
Q ss_pred cCCCCCCeeEEEEecCChHhH-------HHHHHHHhCCCceEEEEEec-cCCHHHHHHHHHhh
Q 013846 70 RKTWDGPKPISVLGSTGSIGT-------QTLDIVAEHEDKFRVVALAA-GSNITLLADQVKRF 124 (435)
Q Consensus 70 ~~~~~~~k~I~IlGSTGSIG~-------qtLdVi~~~pd~f~VvaLaa-~~N~~~L~~q~~~f 124 (435)
...+..+-.|+|+||||=-=. -.|..-...|+.|.|+|.+- .-+-+.+.+++++.
T Consensus 82 ~~~~~~~~~iVIFGATGDLA~RKL~PALy~L~~~g~Lp~~~~IIG~aR~~~s~e~fr~~v~~~ 144 (573)
T PLN02640 82 AEKGESTLSITVVGASGDLAKKKIFPALFALFYEDWLPENFTVFGYARTKLTDEELRDMISST 144 (573)
T ss_pred ccCCCCCeEEEEeCCccHhhhhhHHHHHHHHHHcCCCCCCCEEEEEECCCCCHHHHHHHHHHH
Confidence 355666789999999995332 11222223688999999874 23445566655543
No 498
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=63.82 E-value=27 Score=31.25 Aligned_cols=45 Identities=13% Similarity=0.271 Sum_probs=32.6
Q ss_pred eEEEEecCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh
Q 013846 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (435)
Q Consensus 78 ~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N~~~L~~q~~~f 124 (435)
||+|+|++|.+|.+..--+...+---+++-+ ..|.+++..++.++
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~--D~~~~~~~g~a~Dl 46 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLI--DINEDKAEGEALDL 46 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEE--ESSHHHHHHHHHHH
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEe--ccCcccceeeehhh
Confidence 6999999999999998888877654554443 35666666666544
No 499
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=63.78 E-value=75 Score=30.99 Aligned_cols=92 Identities=16% Similarity=0.176 Sum_probs=49.9
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceE-EEEEeccCCHHHHHHHHHhhCCCEEEEcCcchHHHHHHHHhcCCCCceEEe
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFR-VVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~-VvaLaa~~N~~~L~~q~~~f~P~~v~v~~e~~~~~l~~~l~~~~~~~~v~~ 155 (435)
.+|.|.| +|++|..++.+.+... .+ |++++.. -+. .+..+++..+.+.-......
T Consensus 161 ~~vlI~g-~g~~g~~~~~lA~~~G--~~~v~~~~~~--~~~-~~~l~~~g~~~~~~~~~~~~------------------ 216 (343)
T cd08236 161 DTVVVIG-AGTIGLLAIQWLKILG--AKRVIAVDID--DEK-LAVARELGADDTINPKEEDV------------------ 216 (343)
T ss_pred CEEEEEC-CCHHHHHHHHHHHHcC--CCEEEEEcCC--HHH-HHHHHHcCCCEEecCccccH------------------
Confidence 3688886 4788888888877653 33 4444322 122 22334455443332211111
Q ss_pred chhHHHHHhcCCCCCEEEEecccccCcHHHHHHHHcCCc
Q 013846 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD 194 (435)
Q Consensus 156 G~egl~~l~~~~~~D~Vv~AIvG~aGL~pt~~Ai~~gK~ 194 (435)
+.+.+.....++|++++.+.+...+...+.+++.+-+
T Consensus 217 --~~~~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~ 253 (343)
T cd08236 217 --EKVRELTEGRGADLVIEAAGSPATIEQALALARPGGK 253 (343)
T ss_pred --HHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcCCE
Confidence 2222233333589999986555567777777766433
No 500
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=63.67 E-value=36 Score=35.59 Aligned_cols=32 Identities=28% Similarity=0.416 Sum_probs=27.6
Q ss_pred eeEEEEecCChHhHHHHHHHHhCCCceEEEEEec
Q 013846 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (435)
Q Consensus 77 k~I~IlGSTGSIG~qtLdVi~~~pd~f~VvaLaa 110 (435)
++|.|.|.+|.||..|..-+.+. .|+|+.+=-
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~--G~~vvV~DN 32 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKT--GHEVVVLDN 32 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHC--CCeEEEEec
Confidence 36999999999999999999884 888988743
Done!