Query 013848
Match_columns 435
No_of_seqs 381 out of 1559
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 08:00:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013848.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013848hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1327 Copine [Signal transdu 100.0 2.6E-79 5.7E-84 637.9 23.0 255 63-333 255-526 (529)
2 cd01459 vWA_copine_like VWA Co 100.0 2.9E-71 6.2E-76 540.4 20.5 223 75-322 19-254 (254)
3 PF07002 Copine: Copine; Inte 100.0 1.1E-48 2.4E-53 353.3 14.8 137 118-266 1-146 (146)
4 PF10138 vWA-TerF-like: vWA fo 100.0 5.7E-32 1.2E-36 254.9 18.0 197 94-331 2-200 (200)
5 cd01457 vWA_ORF176_type VWA OR 99.8 1.4E-19 3.1E-24 169.5 11.3 168 95-298 4-186 (199)
6 smart00327 VWA von Willebrand 98.8 2.3E-08 4.9E-13 88.9 10.5 150 94-282 2-160 (177)
7 cd01461 vWA_interalpha_trypsin 98.8 8.5E-08 1.8E-12 86.0 13.7 147 94-278 3-150 (171)
8 PF13920 zf-C3HC4_3: Zinc fing 98.7 2.8E-09 6.1E-14 79.4 0.7 44 388-431 1-50 (50)
9 cd01463 vWA_VGCC_like VWA Volt 98.7 2.3E-07 5.1E-12 86.2 12.0 147 94-277 14-176 (190)
10 KOG4172 Predicted E3 ubiquitin 98.6 2.7E-09 5.9E-14 81.1 -2.1 46 390-435 8-60 (62)
11 cd01471 vWA_micronemal_protein 98.6 4.3E-07 9.3E-12 83.6 11.7 168 95-296 2-178 (186)
12 cd00198 vWFA Von Willebrand fa 98.6 7.9E-07 1.7E-11 76.5 12.5 146 95-278 2-153 (161)
13 cd01464 vWA_subfamily VWA subf 98.5 4.6E-07 9.9E-12 83.1 9.7 144 94-279 4-160 (176)
14 cd01450 vWFA_subfamily_ECM Von 98.5 1.1E-06 2.4E-11 77.2 10.4 145 95-278 2-153 (161)
15 cd01466 vWA_C3HC4_type VWA C3H 98.4 2E-06 4.3E-11 77.6 11.2 141 95-278 2-145 (155)
16 PLN03208 E3 ubiquitin-protein 98.4 9.4E-08 2E-12 90.3 2.3 46 385-430 14-80 (193)
17 PF15227 zf-C3HC4_4: zinc fing 98.4 6.7E-08 1.4E-12 70.0 0.6 33 392-424 1-42 (42)
18 cd01454 vWA_norD_type norD typ 98.4 7.6E-06 1.6E-10 74.8 13.8 150 95-269 2-154 (174)
19 PF13519 VWA_2: von Willebrand 98.4 3.2E-06 6.9E-11 74.7 10.8 139 95-270 1-139 (172)
20 KOG1571 Predicted E3 ubiquitin 98.4 1.3E-07 2.9E-12 96.0 1.7 48 388-435 304-353 (355)
21 cd01465 vWA_subgroup VWA subgr 98.3 1.5E-05 3.2E-10 71.5 14.4 146 94-276 1-149 (170)
22 KOG4275 Predicted E3 ubiquitin 98.3 6.3E-08 1.4E-12 95.8 -1.0 48 388-435 299-348 (350)
23 KOG0320 Predicted E3 ubiquitin 98.3 1.4E-07 3.1E-12 87.7 1.0 48 388-435 130-186 (187)
24 KOG0823 Predicted E3 ubiquitin 98.3 1.9E-07 4E-12 90.0 1.6 49 387-435 45-103 (230)
25 PHA02929 N1R/p28-like protein; 98.3 2.7E-07 5.8E-12 90.1 1.8 46 388-433 173-231 (238)
26 KOG0317 Predicted E3 ubiquitin 98.3 2.8E-07 6.1E-12 91.2 1.9 44 387-430 237-285 (293)
27 KOG4265 Predicted E3 ubiquitin 98.2 3.8E-07 8.2E-12 92.7 2.0 49 387-435 288-342 (349)
28 cd01456 vWA_ywmD_type VWA ywmD 98.2 9.4E-06 2E-10 76.4 10.3 160 94-276 21-188 (206)
29 cd01470 vWA_complement_factors 98.2 2E-05 4.3E-10 73.6 11.7 153 94-278 1-176 (198)
30 cd01473 vWA_CTRP CTRP for CS 98.2 5.2E-05 1.1E-09 71.4 14.5 170 95-297 2-180 (192)
31 KOG2164 Predicted E3 ubiquitin 98.2 1.1E-06 2.5E-11 92.7 3.6 42 389-430 186-237 (513)
32 cd01482 vWA_collagen_alphaI-XI 98.2 1.9E-05 4.1E-10 71.6 11.2 142 95-278 2-151 (164)
33 PHA02926 zinc finger-like prot 98.1 7.9E-07 1.7E-11 85.5 1.1 46 387-432 168-233 (242)
34 cd01472 vWA_collagen von Wille 98.1 2.7E-05 5.8E-10 70.3 11.1 141 95-278 2-151 (164)
35 TIGR00599 rad18 DNA repair pro 98.1 1E-06 2.2E-11 91.8 1.9 50 381-430 18-72 (397)
36 TIGR03788 marine_srt_targ mari 98.1 2.3E-05 4.9E-10 85.7 12.4 145 94-277 272-418 (596)
37 cd01476 VWA_integrin_invertebr 98.1 6.6E-05 1.4E-09 67.3 13.1 134 94-268 1-142 (163)
38 PF13639 zf-RING_2: Ring finge 98.0 1E-06 2.2E-11 63.8 -0.3 35 391-425 2-44 (44)
39 cd01467 vWA_BatA_type VWA BatA 98.0 7.7E-05 1.7E-09 67.8 11.7 140 94-267 3-142 (180)
40 PF13768 VWA_3: von Willebrand 98.0 4.7E-05 1E-09 68.0 9.8 142 95-276 2-145 (155)
41 PF13923 zf-C3HC4_2: Zinc fing 97.9 2.6E-06 5.5E-11 60.3 0.7 33 392-424 1-39 (39)
42 smart00504 Ubox Modified RING 97.9 4E-06 8.6E-11 64.4 1.7 42 389-430 1-47 (63)
43 cd01480 vWA_collagen_alpha_1-V 97.9 0.0001 2.2E-09 68.5 11.4 146 94-277 3-160 (186)
44 PF00092 VWA: von Willebrand f 97.9 8.3E-05 1.8E-09 66.4 9.6 145 95-277 1-153 (178)
45 cd01462 VWA_YIEM_type VWA YIEM 97.9 0.00036 7.8E-09 62.0 13.2 133 95-268 2-135 (152)
46 PF14634 zf-RING_5: zinc-RING 97.8 7.1E-06 1.5E-10 59.6 1.7 36 391-426 1-44 (44)
47 PTZ00441 sporozoite surface pr 97.8 0.00029 6.2E-09 76.5 13.4 141 94-268 43-189 (576)
48 cd01474 vWA_ATR ATR (Anthrax T 97.8 0.00015 3.2E-09 67.1 9.8 146 94-278 5-155 (185)
49 cd01475 vWA_Matrilin VWA_Matri 97.8 0.00021 4.5E-09 68.4 11.1 141 94-277 3-155 (224)
50 cd00162 RING RING-finger (Real 97.7 1.2E-05 2.6E-10 56.3 1.2 38 391-428 1-45 (45)
51 PF00097 zf-C3HC4: Zinc finger 97.7 8.2E-06 1.8E-10 57.8 -0.1 33 392-424 1-41 (41)
52 cd01451 vWA_Magnesium_chelatas 97.7 0.00082 1.8E-08 61.9 13.1 145 96-276 3-153 (178)
53 COG5574 PEX10 RING-finger-cont 97.7 1.4E-05 2.9E-10 78.7 1.3 43 387-429 213-262 (271)
54 KOG0978 E3 ubiquitin ligase in 97.7 1.2E-05 2.6E-10 88.5 0.6 44 387-430 641-690 (698)
55 cd01477 vWA_F09G8-8_type VWA F 97.6 0.00066 1.4E-08 64.3 12.0 139 94-268 20-172 (193)
56 cd01453 vWA_transcription_fact 97.6 0.00065 1.4E-08 63.5 11.6 139 94-268 4-147 (183)
57 cd01469 vWA_integrins_alpha_su 97.6 0.00077 1.7E-08 62.2 11.2 135 94-268 1-143 (177)
58 cd01460 vWA_midasin VWA_Midasi 97.6 0.001 2.2E-08 66.3 12.7 138 94-268 61-205 (266)
59 PF13445 zf-RING_UBOX: RING-ty 97.5 2E-05 4.2E-10 57.6 -0.1 26 392-418 1-31 (43)
60 KOG0287 Postreplication repair 97.5 1.5E-05 3.3E-10 80.6 -1.1 48 383-430 17-69 (442)
61 KOG0311 Predicted E3 ubiquitin 97.5 5.3E-06 1.1E-10 84.3 -4.8 50 383-432 37-93 (381)
62 smart00184 RING Ring finger. E 97.5 7.9E-05 1.7E-09 50.2 2.4 33 392-424 1-39 (39)
63 PRK13685 hypothetical protein; 97.5 0.0021 4.5E-08 65.3 13.6 143 94-268 89-239 (326)
64 PF09967 DUF2201: VWA-like dom 97.4 0.00061 1.3E-08 60.4 8.2 121 96-276 1-125 (126)
65 cd01455 vWA_F11C1-5a_type Von 97.4 0.0018 3.9E-08 61.6 11.0 156 95-275 2-160 (191)
66 KOG1785 Tyrosine kinase negati 97.3 5.9E-05 1.3E-09 77.8 0.8 41 390-430 370-417 (563)
67 PF14835 zf-RING_6: zf-RING of 97.3 5.7E-05 1.2E-09 59.7 0.2 43 387-429 5-51 (65)
68 cd01481 vWA_collagen_alpha3-VI 97.3 0.0032 6.8E-08 57.9 11.7 141 95-278 2-154 (165)
69 cd01458 vWA_ku Ku70/Ku80 N-ter 97.2 0.0097 2.1E-07 56.7 14.6 155 95-269 3-174 (218)
70 COG5432 RAD18 RING-finger-cont 97.2 8.7E-05 1.9E-09 74.0 0.3 45 385-429 21-70 (391)
71 COG5540 RING-finger-containing 97.2 0.00011 2.5E-09 73.5 1.1 41 389-429 323-372 (374)
72 PRK13406 bchD magnesium chelat 97.2 0.0057 1.2E-07 67.2 13.8 166 94-296 402-570 (584)
73 PF04564 U-box: U-box domain; 97.1 0.00014 3E-09 58.5 0.8 44 388-431 3-52 (73)
74 KOG4628 Predicted E3 ubiquitin 97.1 0.00022 4.7E-09 73.3 1.8 41 390-430 230-279 (348)
75 TIGR02031 BchD-ChlD magnesium 97.0 0.011 2.3E-07 65.1 14.5 155 94-278 408-571 (589)
76 KOG1100 Predicted E3 ubiquitin 97.0 0.00036 7.9E-09 67.1 2.0 45 391-435 160-206 (207)
77 TIGR03436 acidobact_VWFA VWFA- 97.0 0.011 2.3E-07 58.8 12.4 136 91-267 52-204 (296)
78 cd01452 VWA_26S_proteasome_sub 97.0 0.011 2.3E-07 56.2 11.7 164 91-295 3-174 (187)
79 KOG0804 Cytoplasmic Zn-finger 96.9 0.00047 1E-08 72.2 2.6 46 383-428 169-221 (493)
80 PF12678 zf-rbx1: RING-H2 zinc 96.8 0.00046 1E-08 55.6 1.4 36 390-425 20-73 (73)
81 TIGR02442 Cob-chelat-sub cobal 96.6 0.035 7.6E-07 61.6 14.4 141 94-268 466-611 (633)
82 COG5236 Uncharacterized conser 96.5 0.00099 2.1E-08 68.0 1.6 51 381-431 53-110 (493)
83 COG5243 HRD1 HRD ubiquitin lig 96.3 0.0015 3.3E-08 67.2 1.5 42 387-428 285-344 (491)
84 KOG0802 E3 ubiquitin ligase [P 96.3 0.0014 3E-08 71.3 0.9 42 387-428 289-340 (543)
85 KOG2879 Predicted E3 ubiquitin 96.3 0.0031 6.6E-08 62.7 3.2 42 388-429 238-287 (298)
86 KOG4159 Predicted E3 ubiquitin 96.2 0.0018 3.9E-08 67.9 1.2 46 385-430 80-130 (398)
87 KOG4692 Predicted E3 ubiquitin 96.1 0.0023 5.1E-08 65.5 1.5 46 387-432 420-470 (489)
88 KOG1039 Predicted E3 ubiquitin 95.9 0.003 6.6E-08 65.0 1.4 46 387-432 159-224 (344)
89 PF12861 zf-Apc11: Anaphase-pr 95.9 0.0039 8.4E-08 52.1 1.7 29 402-430 47-83 (85)
90 PRK10997 yieM hypothetical pro 95.9 0.15 3.3E-06 55.0 13.9 145 94-278 324-469 (487)
91 PF05762 VWA_CoxE: VWA domain 95.8 0.1 2.2E-06 50.3 11.3 121 94-254 58-179 (222)
92 KOG3002 Zn finger protein [Gen 95.8 0.0045 9.8E-08 62.7 1.8 46 385-430 44-92 (299)
93 TIGR00868 hCaCC calcium-activa 95.7 0.071 1.5E-06 61.1 11.2 140 96-276 307-449 (863)
94 PF14447 Prok-RING_4: Prokaryo 95.5 0.0076 1.6E-07 46.3 1.7 44 387-430 5-51 (55)
95 KOG0825 PHD Zn-finger protein 94.9 0.0047 1E-07 68.6 -1.4 45 388-432 122-174 (1134)
96 COG5152 Uncharacterized conser 94.6 0.01 2.2E-07 56.6 0.4 42 389-430 196-242 (259)
97 KOG2660 Locus-specific chromos 94.4 0.011 2.3E-07 60.2 -0.2 47 386-432 12-64 (331)
98 KOG3039 Uncharacterized conser 94.3 0.023 5E-07 55.9 1.9 44 388-431 220-272 (303)
99 KOG0297 TNF receptor-associate 94.2 0.027 5.9E-07 59.1 2.2 45 386-430 18-68 (391)
100 PF14570 zf-RING_4: RING/Ubox 93.7 0.022 4.8E-07 42.7 0.4 37 392-428 1-47 (48)
101 PF04641 Rtf2: Rtf2 RING-finge 93.6 0.049 1.1E-06 54.0 2.8 45 386-430 110-162 (260)
102 KOG2177 Predicted E3 ubiquitin 93.5 0.028 6.1E-07 53.0 0.9 25 402-426 27-55 (386)
103 KOG1813 Predicted E3 ubiquitin 93.2 0.038 8.2E-07 55.7 1.3 42 390-431 242-288 (313)
104 KOG0828 Predicted E3 ubiquitin 92.7 0.033 7.2E-07 59.4 0.0 43 387-429 569-634 (636)
105 COG5175 MOT2 Transcriptional r 92.1 0.059 1.3E-06 55.3 0.9 43 387-429 12-64 (480)
106 COG1240 ChlD Mg-chelatase subu 91.8 4 8.7E-05 40.8 13.3 145 89-269 74-224 (261)
107 KOG0826 Predicted E3 ubiquitin 91.8 0.13 2.9E-06 52.5 3.1 48 388-435 299-354 (357)
108 KOG1002 Nucleotide excision re 91.4 0.053 1.1E-06 58.4 -0.2 43 386-428 533-585 (791)
109 KOG1001 Helicase-like transcri 90.8 0.083 1.8E-06 59.1 0.6 40 390-430 455-501 (674)
110 KOG1734 Predicted RING-contain 90.1 0.15 3.2E-06 51.0 1.5 43 388-430 223-282 (328)
111 COG2425 Uncharacterized protei 89.5 3.7 8.1E-05 44.0 11.5 135 89-264 269-405 (437)
112 KOG1493 Anaphase-promoting com 88.2 0.098 2.1E-06 42.9 -1.0 40 390-429 32-81 (84)
113 COG4245 TerY Uncharacterized p 88.1 2.4 5.2E-05 40.7 8.0 138 95-277 5-159 (207)
114 COG5222 Uncharacterized conser 87.5 0.24 5.2E-06 50.2 1.1 37 390-426 275-318 (427)
115 PF11789 zf-Nse: Zinc-finger o 87.3 0.28 6.1E-06 37.9 1.1 36 388-423 10-53 (57)
116 KOG1814 Predicted E3 ubiquitin 86.2 0.24 5.2E-06 52.1 0.2 30 388-417 183-216 (445)
117 PF10367 Vps39_2: Vacuolar sor 85.4 0.47 1E-05 39.6 1.6 31 387-417 76-109 (109)
118 PF11793 FANCL_C: FANCL C-term 85.4 0.23 4.9E-06 39.8 -0.3 43 389-431 2-68 (70)
119 KOG2932 E3 ubiquitin ligase in 85.0 0.36 7.9E-06 49.1 0.8 28 403-430 106-135 (389)
120 PF03731 Ku_N: Ku70/Ku80 N-ter 84.7 19 0.00042 34.0 12.5 145 96-265 2-172 (224)
121 COG5219 Uncharacterized conser 82.6 0.38 8.3E-06 55.2 -0.1 44 387-430 1467-1524(1525)
122 PF10272 Tmpp129: Putative tra 81.7 1 2.3E-05 46.9 2.7 25 406-430 311-352 (358)
123 KOG1428 Inhibitor of type V ad 80.3 0.59 1.3E-05 55.7 0.4 44 387-430 3484-3545(3738)
124 PF03854 zf-P11: P-11 zinc fin 79.6 0.88 1.9E-05 34.2 0.9 42 391-433 4-50 (50)
125 PF05290 Baculo_IE-1: Baculovi 78.5 0.73 1.6E-05 41.7 0.3 41 390-430 81-133 (140)
126 KOG4445 Uncharacterized conser 78.1 0.42 9E-06 48.6 -1.6 27 390-416 116-146 (368)
127 KOG0298 DEAD box-containing he 74.1 0.58 1.3E-05 55.2 -1.9 40 388-427 1152-1197(1394)
128 COG5194 APC11 Component of SCF 73.8 1.8 3.9E-05 36.0 1.4 40 390-429 32-81 (88)
129 PHA03096 p28-like protein; Pro 72.3 1.2 2.6E-05 45.0 0.0 29 390-418 179-216 (284)
130 PF11775 CobT_C: Cobalamin bio 71.5 12 0.00026 36.7 6.6 51 215-267 134-187 (219)
131 smart00744 RINGv The RING-vari 68.6 2.8 6E-05 31.3 1.3 35 391-425 1-49 (49)
132 KOG2114 Vacuolar assembly/sort 68.2 2.2 4.8E-05 48.6 1.0 41 390-430 841-884 (933)
133 PF05883 Baculo_RING: Baculovi 67.3 1.5 3.2E-05 39.8 -0.5 30 389-418 26-65 (134)
134 KOG4362 Transcriptional regula 65.9 1.7 3.7E-05 48.7 -0.5 44 387-430 19-70 (684)
135 KOG2353 L-type voltage-depende 65.5 69 0.0015 38.4 12.3 147 94-274 226-382 (1104)
136 KOG2817 Predicted E3 ubiquitin 65.0 2.7 5.7E-05 44.2 0.7 40 389-428 334-384 (394)
137 COG4548 NorD Nitric oxide redu 61.4 24 0.00053 38.9 7.1 169 95-292 448-619 (637)
138 KOG3579 Predicted E3 ubiquitin 59.8 5.7 0.00012 40.3 1.9 29 388-416 267-300 (352)
139 PF02891 zf-MIZ: MIZ/SP-RING z 58.6 6.4 0.00014 29.5 1.6 38 390-427 3-50 (50)
140 KOG0825 PHD Zn-finger protein 55.1 7 0.00015 44.6 1.9 25 405-429 120-154 (1134)
141 PF04710 Pellino: Pellino; In 55.0 4 8.7E-05 43.1 0.0 21 138-158 84-104 (416)
142 KOG1952 Transcription factor N 52.2 15 0.00033 42.2 3.9 42 388-429 190-247 (950)
143 TIGR00578 ku70 ATP-dependent D 52.1 3E+02 0.0065 30.7 14.0 152 95-266 12-182 (584)
144 PF07191 zinc-ribbons_6: zinc- 49.7 3.1 6.7E-05 33.7 -1.4 37 390-429 2-41 (70)
145 KOG2113 Predicted RNA binding 47.7 12 0.00027 38.5 2.2 44 389-432 343-390 (394)
146 PF04811 Sec23_trunk: Sec23/Se 47.7 2.6E+02 0.0057 26.8 12.9 154 95-268 5-202 (243)
147 KOG3899 Uncharacterized conser 47.1 6.2 0.00013 40.2 -0.1 25 406-430 325-366 (381)
148 TIGR01651 CobT cobaltochelatas 46.9 47 0.001 37.1 6.6 60 203-267 502-567 (600)
149 KOG1812 Predicted E3 ubiquitin 46.6 9.1 0.0002 40.3 1.1 28 389-416 146-178 (384)
150 PF07975 C1_4: TFIIH C1-like d 45.5 16 0.00035 27.8 2.0 21 405-425 26-50 (51)
151 PF04131 NanE: Putative N-acet 44.2 1.5E+02 0.0033 28.6 8.8 97 78-230 53-155 (192)
152 PF00113 Enolase_C: Enolase, C 44.1 1.2E+02 0.0025 31.1 8.5 156 72-263 76-234 (295)
153 PF06415 iPGM_N: BPG-independe 43.4 47 0.001 32.6 5.3 55 201-266 14-71 (223)
154 PHA02825 LAP/PHD finger-like p 42.8 17 0.00037 33.9 2.1 43 387-429 6-59 (162)
155 KOG2068 MOT2 transcription fac 41.4 19 0.00042 37.2 2.4 41 390-430 250-299 (327)
156 KOG4465 Uncharacterized conser 40.0 2.6E+02 0.0057 29.8 10.3 140 95-273 429-569 (598)
157 PLN00191 enolase 39.9 2.4E+02 0.0052 30.6 10.5 70 74-144 241-312 (457)
158 KOG2807 RNA polymerase II tran 37.4 1.4E+02 0.003 31.3 7.7 145 88-267 56-203 (378)
159 cd03313 enolase Enolase: Enola 37.2 3.4E+02 0.0074 28.8 11.0 65 74-144 211-278 (408)
160 COG3959 Transketolase, N-termi 37.1 35 0.00077 33.8 3.4 70 178-260 89-172 (243)
161 KOG3799 Rab3 effector RIM1 and 36.7 12 0.00025 34.2 0.1 39 387-427 63-116 (169)
162 COG1488 PncB Nicotinic acid ph 36.2 1.3E+02 0.0028 32.2 7.6 62 188-268 264-325 (405)
163 PF02601 Exonuc_VII_L: Exonucl 36.1 99 0.0021 31.1 6.6 15 176-190 27-41 (319)
164 KOG2034 Vacuolar sorting prote 35.3 15 0.00032 42.5 0.6 31 386-416 814-847 (911)
165 PF04216 FdhE: Protein involve 34.5 9.9 0.00021 38.2 -0.9 44 388-431 171-224 (290)
166 PF09297 zf-NADH-PPase: NADH p 33.8 10 0.00022 25.6 -0.7 20 407-426 2-29 (32)
167 PF14871 GHL6: Hypothetical gl 33.8 1.4E+02 0.003 26.7 6.5 68 77-149 44-129 (132)
168 COG2816 NPY1 NTP pyrophosphohy 33.2 19 0.00041 36.5 0.9 26 405-430 108-141 (279)
169 KOG1941 Acetylcholine receptor 32.8 10 0.00022 40.2 -1.2 39 388-426 364-413 (518)
170 PRK03564 formate dehydrogenase 32.3 37 0.00081 34.9 2.8 39 388-426 186-234 (309)
171 cd01468 trunk_domain trunk dom 31.8 4.7E+02 0.01 25.1 14.4 158 95-277 5-211 (239)
172 KOG3161 Predicted E3 ubiquitin 30.5 21 0.00045 40.1 0.7 23 402-425 29-53 (861)
173 PF02318 FYVE_2: FYVE-type zin 30.0 13 0.00027 32.6 -0.9 38 390-427 55-103 (118)
174 KOG1940 Zn-finger protein [Gen 29.5 13 0.00029 37.6 -0.9 37 392-429 161-206 (276)
175 PF04084 ORC2: Origin recognit 29.3 3.2E+02 0.007 28.2 9.1 109 148-269 56-179 (326)
176 COG4306 Uncharacterized protei 29.1 20 0.00043 32.4 0.2 22 409-430 29-51 (160)
177 KOG3113 Uncharacterized conser 28.8 32 0.0007 34.5 1.6 44 387-430 109-159 (293)
178 KOG2807 RNA polymerase II tran 27.9 39 0.00084 35.1 2.1 36 390-425 331-374 (378)
179 TIGR01562 FdhE formate dehydro 27.1 40 0.00086 34.6 2.0 40 388-427 183-233 (305)
180 PF14569 zf-UDP: Zinc-binding 26.4 44 0.00095 27.8 1.7 42 389-430 9-63 (80)
181 COG5109 Uncharacterized conser 26.2 27 0.00058 36.1 0.6 40 388-427 335-385 (396)
182 KOG0183 20S proteasome, regula 26.0 3.5E+02 0.0076 26.8 8.0 38 66-115 92-129 (249)
183 KOG3842 Adaptor protein Pellin 25.9 39 0.00083 35.1 1.6 43 388-430 340-415 (429)
184 PF10083 DUF2321: Uncharacteri 25.0 20 0.00044 33.3 -0.5 25 407-431 27-52 (158)
185 PTZ00081 enolase; Provisional 24.7 7.6E+02 0.017 26.6 11.2 66 75-144 227-298 (439)
186 PF02601 Exonuc_VII_L: Exonucl 24.5 2.7E+02 0.0058 28.0 7.4 21 243-267 96-116 (319)
187 COG3552 CoxE Protein containin 24.5 2.5E+02 0.0055 29.8 7.2 105 95-230 220-325 (395)
188 KOG3970 Predicted E3 ubiquitin 24.3 32 0.00069 34.1 0.7 41 390-430 51-106 (299)
189 KOG2113 Predicted RNA binding 24.0 68 0.0015 33.3 3.0 45 387-431 134-185 (394)
190 COG3864 Uncharacterized protei 24.0 71 0.0015 33.3 3.1 53 191-267 322-374 (396)
191 KOG1202 Animal-type fatty acid 23.4 74 0.0016 38.8 3.4 70 147-230 2146-2221(2376)
192 PF01363 FYVE: FYVE zinc finge 22.8 28 0.00062 27.0 0.0 29 388-416 8-41 (69)
193 PRK00286 xseA exodeoxyribonucl 22.4 2.1E+02 0.0046 30.2 6.5 65 202-279 148-214 (438)
194 PF10497 zf-4CXXC_R1: Zinc-fin 22.3 69 0.0015 27.7 2.3 20 407-426 37-69 (105)
195 KOG3053 Uncharacterized conser 22.1 32 0.0007 34.6 0.3 44 385-428 16-81 (293)
196 PF10571 UPF0547: Uncharacteri 21.7 49 0.0011 21.7 0.9 20 391-410 2-24 (26)
197 PF10235 Cript: Microtubule-as 21.7 46 0.001 28.3 1.1 37 389-429 44-80 (90)
198 PLN02189 cellulose synthase 21.5 56 0.0012 38.8 2.0 40 390-429 35-87 (1040)
199 PLN02436 cellulose synthase A 21.4 57 0.0012 38.8 2.1 41 389-429 36-89 (1094)
200 KOG1815 Predicted E3 ubiquitin 21.4 49 0.0011 35.3 1.5 30 388-417 69-100 (444)
201 PLN02400 cellulose synthase 21.1 52 0.0011 39.2 1.7 41 389-429 36-89 (1085)
202 KOG3039 Uncharacterized conser 21.1 57 0.0012 32.8 1.7 33 384-416 38-71 (303)
203 PRK05434 phosphoglyceromutase; 20.9 2.8E+02 0.006 30.6 7.1 31 200-230 95-125 (507)
204 KOG2930 SCF ubiquitin ligase, 20.3 37 0.0008 29.7 0.2 23 405-427 80-106 (114)
205 TIGR01307 pgm_bpd_ind 2,3-bisp 20.2 2.9E+02 0.0064 30.4 7.0 31 200-230 91-121 (501)
206 KOG3268 Predicted E3 ubiquitin 20.1 41 0.00089 32.2 0.5 48 385-432 161-231 (234)
207 PF05502 Dynactin_p62: Dynacti 20.1 51 0.0011 35.9 1.3 14 388-401 25-38 (483)
No 1
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=100.00 E-value=2.6e-79 Score=637.87 Aligned_cols=255 Identities=47% Similarity=0.715 Sum_probs=237.5
Q ss_pred hHhhhcccccccccccHHHHHHHHHhcCCceeceEEEEecCCCCCCCCCCCCCCCCcccCCC-CCCHHHHHHHHHhhccc
Q 013848 63 RKLERKYSKIDDNYHSLEQVTDALARAGLESSNLIVGIDFTKSNEWTGARSFQRRSLHHIGD-DQNPYEQAISIIGKTLS 141 (435)
Q Consensus 63 ~~~~~~~~~i~~~y~~ld~v~~al~~~Gl~~~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~-~~N~Yq~AI~~Ig~vl~ 141 (435)
+.++.++..+.++|+++++++-++..+|++++||+||||||+||+|++.+ .|||||++ .+|+||+||++||+||+
T Consensus 255 k~~k~~g~~~l~~~~~~~~~sfld~i~gg~~lnf~vgIDfTaSNg~p~~~----sSLHyi~p~~~N~Y~~Ai~~vG~~lq 330 (529)
T KOG1327|consen 255 KSYKNSGQLILDRFTSLDQYSFLDYIAGGEQLNFTVGIDFTASNGDPRNP----SSLHYIDPHQPNPYEQAIRSVGETLQ 330 (529)
T ss_pred hcccccceEEehheeehhhhhHHHHHccCceeeeEEEEEEeccCCCCCCC----CcceecCCCCCCHHHHHHHHHhhhhc
Confidence 34566899999999999999999999999999999999999999998764 49999996 78999999999999999
Q ss_pred ccCCCCccceeeeCCCCCC---CCc--ccccCCCCCccCCHHHHHHHHHHhcCcccccCCCChHHHHHHHHHHHHhcC--
Q 013848 142 SFDEDNLIPCFGFGDASTH---DQE--VFSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSG-- 214 (435)
Q Consensus 142 ~yD~D~~ip~fGFGa~~~~---~~~--vF~~~~~~~~~~G~~gvl~~Yr~~~~~v~l~GPT~fapII~~a~~~~~~~~-- 214 (435)
+||+|++||+|||||+.+. .++ +|+|+|.|++|+||+|||+|||+++|+|+|+|||+|||||++|+++|+++.
T Consensus 331 ~ydsdk~fpa~GFGakip~~~~vs~~f~ln~~~~~~~c~Gi~gVl~aY~~~lp~v~l~GPTnFaPII~~va~~a~~~~~~ 410 (529)
T KOG1327|consen 331 DYDSDKLFPAFGFGAKIPPDGQVSHEFVLNFNPEDPECRGIEGVLEAYRKALPNVQLYGPTNFSPIINHVARIAQQSGNT 410 (529)
T ss_pred ccCCCCccccccccccCCCCcccccceeecCCCCCCccccHHHHHHHHHhhcccccccCCCccHHHHHHHHHHHHHhccC
Confidence 9999999999999999765 444 456778999999999999999999999999999999999999999999986
Q ss_pred -CceEEEEEEeCCcccccCCcccCccchhHHHHHHHHHHhcCCCeEEEEEecCCCCCCcccccCCCCCc-------cccc
Q 013848 215 -GQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGDGPWDMMREFDDNIPA-------RAFD 286 (435)
Q Consensus 215 -~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~T~~aIv~AS~~PLSIIiVGVGd~~f~~m~~lDd~~~~-------R~~D 286 (435)
++||||||||||+||| |++|++|||.||+||||||||||||+||++|++||++++. |.||
T Consensus 411 ~~qY~VLlIitDG~vTd------------m~~T~~AIV~AS~lPlSIIiVGVGd~df~~M~~lD~d~~~l~~~gr~~~rD 478 (529)
T KOG1327|consen 411 AGQYHVLLIITDGVVTD------------MKETRDAIVSASDLPLSIIIVGVGDADFDMMRELDGDDPKLRSPGRIAERD 478 (529)
T ss_pred CcceEEEEEEeCCcccc------------HHHHHHHHHhhccCCeEEEEEEeCCCCHHHHHHhhcCCccccccccccccc
Confidence 8999999999999997 9999999999999999999999999999999999998776 7899
Q ss_pred eeeeeccccccccccccchhHHHHHHHHHHHhHHHHHHHHHh-ccccc
Q 013848 287 NFQFVNFTEIMSKNVDRSRKEAEFALAALMEIPSQYKAALEF-NILGA 333 (435)
Q Consensus 287 nvqFV~f~~~~~~~~~~~~~~~~la~~~L~EIP~Q~~~~~~l-~~l~~ 333 (435)
|||||+|++|+.++.+.+.++++||+.+|||||+||++||++ |++.+
T Consensus 479 ~vQFV~f~~~~~~~~~~~~~~~~lA~~vL~EIP~Q~~~y~~~~~~~p~ 526 (529)
T KOG1327|consen 479 NVQFVPFRDIMNGAENPSDKEAALALAVLAEIPQQYVQYMRLRGILPK 526 (529)
T ss_pred ceEeecHHHHhhcCCcccchhHHHHHHHHHHhhHHHHHHHHhcCCCCC
Confidence 999999999999888888899999999999999999999999 55553
No 2
>cd01459 vWA_copine_like VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium. They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. Phylogenetic distribution suggests that copines have been lost in some eukaryotes. No functional properties have been assigned to the VWA domains present in copines. The members of this subgroup contain a functional MIDAS motif based on their preferential binding to magnesium and manganese. However, the MIDAS motif is not totally conserved, in most cases the MIDAS consists of the sequence DxTxS instead of the motif DxSxS that is found in most cases. The C2 domains present in copines mediate phospholipid binding.
Probab=100.00 E-value=2.9e-71 Score=540.42 Aligned_cols=223 Identities=54% Similarity=0.894 Sum_probs=203.6
Q ss_pred ccccHHHHHHHHHhcCCceeceEEEEecCCCCCCCCCCCCCCCCcccCCC-CCCHHHHHHHHHhhcccccCCCCccceee
Q 013848 75 NYHSLEQVTDALARAGLESSNLIVGIDFTKSNEWTGARSFQRRSLHHIGD-DQNPYEQAISIIGKTLSSFDEDNLIPCFG 153 (435)
Q Consensus 75 ~y~~ld~v~~al~~~Gl~~~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~-~~N~Yq~AI~~Ig~vl~~yD~D~~ip~fG 153 (435)
.|++|||+ ++|+| +||+||||||+||+|+++ ++||||+++ ..|+||+||++||+||+.||+|++|||||
T Consensus 19 ~~tFldy~-----~~G~~-~nl~vaIDfT~SNg~p~~----~~SLHy~~~~~~N~Yq~aI~~vg~il~~yD~D~~ip~~G 88 (254)
T cd01459 19 QPTFLDYR-----SAGLE-SNLIVAIDFTKSNGWPGE----KRSLHYISPGRLNPYQKAIRIVGEVLQPYDSDKLIPAFG 88 (254)
T ss_pred CCCHHHHH-----hCCCe-eeEEEEEEeCCCCCCCCC----CCCcccCCCCCccHHHHHHHHHHHHHHhcCCCCceeeEe
Confidence 89999999 89999 599999999999999865 589999976 57999999999999999999999999999
Q ss_pred eCCCCCCCCccccc---CCCCCccCCHHHHHHHHHHhcCcccccCCCChHHHHHHHHHHHHhcCC--ceEEEEEEeCCcc
Q 013848 154 FGDASTHDQEVFSF---YPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSGG--QYHVLVIIADGQV 228 (435)
Q Consensus 154 FGa~~~~~~~vF~~---~~~~~~~~G~~gvl~~Yr~~~~~v~l~GPT~fapII~~a~~~~~~~~~--~Y~VLlIiTDG~i 228 (435)
||++.+++..++++ ++++|+|.|++|||++|++++++|+|+|||+|+|||++|+++++++.. +|+||||||||+|
T Consensus 89 FGa~~~~~~~v~~~f~~~~~~p~~~Gi~gvl~aY~~~l~~v~lsGpT~fapvI~~a~~~a~~~~~~~~Y~VLLIiTDG~i 168 (254)
T cd01459 89 FGAIVTKDQSVFSFFPGYSESPECQGFEGVLRAYREALPNVSLSGPTNFAPVIRAAANIAKASNSQSKYHILLIITDGEI 168 (254)
T ss_pred ecccCCCCCccccccCCCCCCCcccCHHHHHHHHHHHhceeeecCcchHHHHHHHHHHHHHHhcCCCceEEEEEECCCCc
Confidence 99998766655444 588999999999999999999999999999999999999999987644 4999999999999
Q ss_pred cccCCcccCccchhHHHHHHHHHHhcCCCeEEEEEecCCCCCCcccccCC-------CCCccccceeeeecccccccccc
Q 013848 229 TRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGDGPWDMMREFDD-------NIPARAFDNFQFVNFTEIMSKNV 301 (435)
Q Consensus 229 ~d~~d~~~~~~~~~~~~T~~aIv~AS~~PLSIIiVGVGd~~f~~m~~lDd-------~~~~R~~DnvqFV~f~~~~~~~~ 301 (435)
+| +++|++||++||++||||||||||+++|+.|++||+ +.+.|.|||||||+|++++...
T Consensus 169 ~D------------~~~t~~aIv~AS~~PlSIiiVGVGd~~F~~M~~LD~d~~l~~~~~~~~~rDnvqFV~f~~~~~~~- 235 (254)
T cd01459 169 TD------------MNETIKAIVEASKYPLSIVIVGVGDGPFDAMERLDDDDGLESSDGRIATRDIVQFVPFTEFMSNA- 235 (254)
T ss_pred cc------------HHHHHHHHHHHhcCCeEEEEEEeCCCChHHHHHhcCccccccccCCcceecceeeecchhhcccc-
Confidence 97 999999999999999999999999999999999998 4567889999999999997431
Q ss_pred ccchhHHHHHHHHHHHhHHHH
Q 013848 302 DRSRKEAEFALAALMEIPSQY 322 (435)
Q Consensus 302 ~~~~~~~~la~~~L~EIP~Q~ 322 (435)
..++.+||+++|+|||+||
T Consensus 236 --~~~~~~La~~~L~EiP~Q~ 254 (254)
T cd01459 236 --GNPEAALATAALAEIPSQL 254 (254)
T ss_pred --cccHHHHHHHHHHhccccC
Confidence 1357899999999999996
No 3
>PF07002 Copine: Copine; InterPro: IPR010734 This represents a conserved region approximately 180 residues long within eukaryotic copines. Copines are Ca2+-dependent phospholipid-binding proteins that are thought to be involved in membrane-trafficking, and may also be involved in cell division and growth [].
Probab=100.00 E-value=1.1e-48 Score=353.29 Aligned_cols=137 Identities=47% Similarity=0.878 Sum_probs=129.0
Q ss_pred CcccCCCC-CCHHHHHHHHHhhcccccCCCCccceeeeCCCCCCCC---cccccC--CCCCccCCHHHHHHHHHHhcCcc
Q 013848 118 SLHHIGDD-QNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQ---EVFSFY--PDEKFCNGFEEVLRRYRELVPHL 191 (435)
Q Consensus 118 SLH~i~~~-~N~Yq~AI~~Ig~vl~~yD~D~~ip~fGFGa~~~~~~---~vF~~~--~~~~~~~G~~gvl~~Yr~~~~~v 191 (435)
||||+++. +|+||+||++||+||++||+|++||+|||||+.+.+. ++|+|+ +++++|.|++|||++||+++++|
T Consensus 1 SLH~~~~~~~N~Y~~ai~~vg~il~~Yd~dk~~p~~GFGa~~~~~~~vsh~F~ln~~~~~p~~~Gi~gvl~~Y~~~~~~v 80 (146)
T PF07002_consen 1 SLHYISPNQPNPYQQAIRAVGEILQDYDSDKMIPAYGFGAKIPPDYSVSHCFPLNGNPQNPECQGIDGVLEAYRKALPKV 80 (146)
T ss_pred CcccCCCCCCCHHHHHHHHHHHHHHhhccCCccceeccCCcCCCCcccccceeeecCCCCCcccCHHHHHHHHHHHhhhe
Confidence 89999984 8999999999999999999999999999999987654 568876 57899999999999999999999
Q ss_pred cccCCCChHHHHHHHHHHHHh---cCCceEEEEEEeCCcccccCCcccCccchhHHHHHHHHHHhcCCCeEEEEEecC
Q 013848 192 RLAGPTSFAPIIEMAITIVEH---SGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVG 266 (435)
Q Consensus 192 ~l~GPT~fapII~~a~~~~~~---~~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~T~~aIv~AS~~PLSIIiVGVG 266 (435)
+|+|||+|+|||++|++++++ .+++|+||||||||+|+| +++|++||++||++||||||||||
T Consensus 81 ~l~GPT~fapiI~~a~~~a~~~~~~~~~Y~iLlIlTDG~i~D------------~~~T~~aIv~AS~~PlSIIiVGVG 146 (146)
T PF07002_consen 81 QLSGPTNFAPIINHAAKIAKQSNQNGQQYFILLILTDGQITD------------MEETIDAIVEASKLPLSIIIVGVG 146 (146)
T ss_pred EECCCccHHHHHHHHHHHHhhhccCCceEEEEEEeccccccc------------HHHHHHHHHHHccCCeEEEEEEeC
Confidence 999999999999999999984 567999999999999997 999999999999999999999998
No 4
>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts.
Probab=100.00 E-value=5.7e-32 Score=254.93 Aligned_cols=197 Identities=22% Similarity=0.334 Sum_probs=167.2
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCCCCccceeeeCCCCCCCCcccccCCCCCc
Q 013848 94 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKF 173 (435)
Q Consensus 94 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~yD~D~~ip~fGFGa~~~~~~~vF~~~~~~~~ 173 (435)
..+.+.||-|+|+. .++ +....|.+++++..+...||+|+.+++|.||....+..+| .
T Consensus 2 ArV~LVLD~SGSM~----------~~y----k~G~vQ~~~Er~lalA~~~DdDG~i~v~~Fs~~~~~~~~v--------t 59 (200)
T PF10138_consen 2 ARVYLVLDISGSMR----------PLY----KDGTVQRVVERILALAAQFDDDGEIDVWFFSTEFDRLPDV--------T 59 (200)
T ss_pred cEEEEEEeCCCCCc----------hhh----hCccHHHHHHHHHHHHhhcCCCCceEEEEeCCCCCcCCCc--------C
Confidence 36899999999994 222 2467999999999999999999999999999987665554 3
Q ss_pred cCCHHHHHHHHHHhcCcccccCCCChHHHHHHHHHHHHhc-CC-ceEEEEEEeCCcccccCCcccCccchhHHHHHHHHH
Q 013848 174 CNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHS-GG-QYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIV 251 (435)
Q Consensus 174 ~~G~~gvl~~Yr~~~~~v~l~GPT~fapII~~a~~~~~~~-~~-~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~T~~aIv 251 (435)
...++++++.....++.+...|-|+++|||+.+++.+.++ +. ....+|+||||.++| .+++.++|+
T Consensus 60 ~~~~~~~v~~~~~~~~~~~~~G~t~y~~vm~~v~~~y~~~~~~~~P~~VlFiTDG~~~~------------~~~~~~~i~ 127 (200)
T PF10138_consen 60 LDNYEGYVDELHAGLPDWGRMGGTNYAPVMEDVLDHYFKREPSDAPALVLFITDGGPDD------------RRAIEKLIR 127 (200)
T ss_pred HHHHHHHHHHHhccccccCCCCCcchHHHHHHHHHHHhhcCCCCCCeEEEEEecCCccc------------hHHHHHHHH
Confidence 4466777755444444456557799999999999998754 22 366778999999996 899999999
Q ss_pred HhcCCCeEEEEEecCCCCCCcccccCCCCCccccceeeeeccccccccccccchhHHHHHHHHHHHhHHHHHHHHHhccc
Q 013848 252 KASEYPLSIILVGVGDGPWDMMREFDDNIPARAFDNFQFVNFTEIMSKNVDRSRKEAEFALAALMEIPSQYKAALEFNIL 331 (435)
Q Consensus 252 ~AS~~PLSIIiVGVGd~~f~~m~~lDd~~~~R~~DnvqFV~f~~~~~~~~~~~~~~~~la~~~L~EIP~Q~~~~~~l~~l 331 (435)
+||++||+|+|||||+.+|+.|++||+ +.+|.+||+.||.+.++. ..++++|++.+|.|+|.|+++++.+|||
T Consensus 128 ~as~~pifwqFVgiG~~~f~fL~kLD~-l~gR~vDNa~Ff~~~d~~------~lsD~eLy~~LL~Efp~Wl~~ar~~gi~ 200 (200)
T PF10138_consen 128 EASDEPIFWQFVGIGDSNFGFLEKLDD-LAGRVVDNAGFFAIDDID------ELSDEELYDRLLAEFPDWLKAARAKGIL 200 (200)
T ss_pred hccCCCeeEEEEEecCCcchHHHHhhc-cCCcccCCcCeEecCCcc------cCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999 899999999999999884 2468999999999999999999999987
No 5
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most
Probab=99.81 E-value=1.4e-19 Score=169.47 Aligned_cols=168 Identities=17% Similarity=0.249 Sum_probs=127.7
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCCCCccceeeeCCCCCCCCcccccCCCCCcc
Q 013848 95 NLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKFC 174 (435)
Q Consensus 95 nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~yD~D~~ip~fGFGa~~~~~~~vF~~~~~~~~~ 174 (435)
+++++||.|+||.+.. .+.++| ..+.+++++..|+.++..||.|+...+|+||.... ++..
T Consensus 4 dvv~~ID~SgSM~~~~----~~~~~~----k~~~ak~~~~~l~~~~~~~D~d~i~l~~f~~~~~~----~~~~------- 64 (199)
T cd01457 4 DYTLLIDKSGSMAEAD----EAKERS----RWEEAQESTRALARKCEEYDSDGITVYLFSGDFRR----YDNV------- 64 (199)
T ss_pred CEEEEEECCCcCCCCC----CCCCch----HHHHHHHHHHHHHHHHHhcCCCCeEEEEecCCccc----cCCc-------
Confidence 6899999999998642 123444 45899999999999999999999777777766421 1111
Q ss_pred CCHHHHHHHHHHhcCcccccCCCChHHHHHHHHHHHHhc--C----CceEEEEEEeCCcccccCCcccCccchhHHHHHH
Q 013848 175 NGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHS--G----GQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVE 248 (435)
Q Consensus 175 ~G~~gvl~~Yr~~~~~v~l~GPT~fapII~~a~~~~~~~--~----~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~T~~ 248 (435)
. .+++.++|.+ +...|+|++.+.|+.+++...+. . ..+.++||||||..++ .+++.+
T Consensus 65 ~-~~~v~~~~~~----~~p~G~T~l~~~l~~a~~~~~~~~~~~~~~p~~~~vIiiTDG~~~d------------~~~~~~ 127 (199)
T cd01457 65 N-SSKVDQLFAE----NSPDGGTNLAAVLQDALNNYFQRKENGATCPEGETFLVITDGAPDD------------KDAVER 127 (199)
T ss_pred C-HHHHHHHHhc----CCCCCcCcHHHHHHHHHHHHHHHHhhccCCCCceEEEEEcCCCCCc------------HHHHHH
Confidence 1 5666666654 44469999999999998543221 1 1278999999999885 678899
Q ss_pred HHHHhcCC-----CeEEEEEecCCC--CCCcccccCCCC--Cccccceeeeeccccccc
Q 013848 249 AIVKASEY-----PLSIILVGVGDG--PWDMMREFDDNI--PARAFDNFQFVNFTEIMS 298 (435)
Q Consensus 249 aIv~AS~~-----PLSIIiVGVGd~--~f~~m~~lDd~~--~~R~~DnvqFV~f~~~~~ 298 (435)
+|++|++. +|.|.|||||++ .|..|++||+.+ .++.||||+||+|.++..
T Consensus 128 ~i~~a~~~l~~~~~i~i~~v~vG~~~~~~~~L~~ld~~~~~~~~~~d~vd~~~~~~~~~ 186 (199)
T cd01457 128 VIIKASDELDADNELAISFLQIGRDPAATAFLKALDDQLQEVGAKFDIVDTVTWDDMER 186 (199)
T ss_pred HHHHHHHhhccccCceEEEEEeCCcHHHHHHHHHHhHHHHhcCCcccceeeeeHHhhhc
Confidence 99999873 888999999885 799999999853 346789999999999854
No 6
>smart00327 VWA von Willebrand factor (vWF) type A domain. VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.
Probab=98.84 E-value=2.3e-08 Score=88.92 Aligned_cols=150 Identities=19% Similarity=0.305 Sum_probs=109.0
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCC---CCccceeeeCCCCCCCCcccccCCC
Q 013848 94 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDE---DNLIPCFGFGDASTHDQEVFSFYPD 170 (435)
Q Consensus 94 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~yD~---D~~ip~fGFGa~~~~~~~vF~~~~~ 170 (435)
.++++.||.|.|+. ......+...+..++..+.. +..|-+++|++... ..+++.
T Consensus 2 ~~v~l~vD~S~SM~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~ii~f~~~~~---~~~~~~-- 58 (177)
T smart00327 2 LDVVFLLDGSGSMG------------------PNRFEKAKEFVLKLVEQLDIGPDGDRVGLVTFSDDAT---VLFPLN-- 58 (177)
T ss_pred ccEEEEEeCCCccc------------------hHHHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCCce---EEEccc--
Confidence 37899999999994 13455555556666655555 88999999998532 222222
Q ss_pred CCccCCHHHHHHHHHHhcCcccccCCCChHHHHHHHHHHHHhc--C---CceEEEEEEeCCcccccCCcccCccchhHHH
Q 013848 171 EKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHS--G---GQYHVLVIIADGQVTRSVDTEHGQLSSQEKK 245 (435)
Q Consensus 171 ~~~~~G~~gvl~~Yr~~~~~v~l~GPT~fapII~~a~~~~~~~--~---~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~ 245 (435)
...+.+.+++......+. ..|.|.+...|+++++.+++. . +...+++|||||...+. +.
T Consensus 59 --~~~~~~~~~~~i~~~~~~--~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~iviitDg~~~~~------------~~ 122 (177)
T smart00327 59 --DSRSKDALLEALASLSYK--LGGGTNLGAALQYALENLFSKSAGSRRGAPKVLILITDGESNDG------------GD 122 (177)
T ss_pred --ccCCHHHHHHHHHhcCCC--CCCCchHHHHHHHHHHHhcCcCCCCCCCCCeEEEEEcCCCCCCC------------cc
Confidence 356778888776665543 568899999999999987521 1 12579999999998851 45
Q ss_pred HHHHHHHhcCCCeEEEEEecCCC-CCCcccccCCCCCc
Q 013848 246 TVEAIVKASEYPLSIILVGVGDG-PWDMMREFDDNIPA 282 (435)
Q Consensus 246 T~~aIv~AS~~PLSIIiVGVGd~-~f~~m~~lDd~~~~ 282 (435)
+.+++..+.+..+.|++||+|+. +.+.|+.|.....+
T Consensus 123 ~~~~~~~~~~~~i~i~~i~~~~~~~~~~l~~~~~~~~~ 160 (177)
T smart00327 123 LLKAAKELKRSGVKVFVVGVGNDVDEEELKKLASAPGG 160 (177)
T ss_pred HHHHHHHHHHCCCEEEEEEccCccCHHHHHHHhCCCcc
Confidence 66777777777899999999998 89999999875443
No 7
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=98.82 E-value=8.5e-08 Score=85.96 Aligned_cols=147 Identities=19% Similarity=0.267 Sum_probs=103.1
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCCCCccceeeeCCCCCCCCcccccCCCCCc
Q 013848 94 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKF 173 (435)
Q Consensus 94 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~yD~D~~ip~fGFGa~~~~~~~vF~~~~~~~~ 173 (435)
.++++.+|.|+|+.. ...+.|...+..++..+..+..|-+++|+...... +.. ..
T Consensus 3 ~~v~~vlD~S~SM~~------------------~~~~~~~~al~~~l~~l~~~~~~~l~~Fs~~~~~~---~~~----~~ 57 (171)
T cd01461 3 KEVVFVIDTSGSMSG------------------TKIEQTKEALLTALKDLPPGDYFNIIGFSDTVEEF---SPS----SV 57 (171)
T ss_pred ceEEEEEECCCCCCC------------------hhHHHHHHHHHHHHHhCCCCCEEEEEEeCCCceee---cCc----ce
Confidence 389999999999951 23667777888888888888889999999864321 111 01
Q ss_pred cCCHHHHHHHHHHhcCcccccCCCChHHHHHHHHHHHHhcCCceEEEEEEeCCcccccCCcccCccchhHHHHHHHHHHh
Q 013848 174 CNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKA 253 (435)
Q Consensus 174 ~~G~~gvl~~Yr~~~~~v~l~GPT~fapII~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~T~~aIv~A 253 (435)
..+.+.+ +...+.+..+...|-|++...|+.+.+..+...+.--++|+||||...+ .+++.+++.++
T Consensus 58 ~~~~~~~-~~~~~~l~~~~~~g~T~l~~al~~a~~~l~~~~~~~~~iillTDG~~~~------------~~~~~~~~~~~ 124 (171)
T cd01461 58 SATAENV-AAAIEYVNRLQALGGTNMNDALEAALELLNSSPGSVPQIILLTDGEVTN------------ESQILKNVREA 124 (171)
T ss_pred eCCHHHH-HHHHHHHHhcCCCCCcCHHHHHHHHHHhhccCCCCccEEEEEeCCCCCC------------HHHHHHHHHHh
Confidence 1222222 2233444556668899999999999888765333447889999999764 46677888887
Q ss_pred cCCCeEEEEEecCC-CCCCcccccCC
Q 013848 254 SEYPLSIILVGVGD-GPWDMMREFDD 278 (435)
Q Consensus 254 S~~PLSIIiVGVGd-~~f~~m~~lDd 278 (435)
.+..+.|..||+|. .+...|+.+-+
T Consensus 125 ~~~~i~i~~i~~g~~~~~~~l~~ia~ 150 (171)
T cd01461 125 LSGRIRLFTFGIGSDVNTYLLERLAR 150 (171)
T ss_pred cCCCceEEEEEeCCccCHHHHHHHHH
Confidence 77788999999996 45666666644
No 8
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.72 E-value=2.8e-09 Score=79.36 Aligned_cols=44 Identities=41% Similarity=1.089 Sum_probs=36.0
Q ss_pred CCCcccccccCCcccee-CCCCc-cchhhhhcC----CCCCccccccccc
Q 013848 388 DNHVCPICLTDPKDMAF-GCGHQ-TCCGCGQDL----DLCPICRSFIQTR 431 (435)
Q Consensus 388 e~~~CpICl~~~~dv~~-~CGH~-fC~~C~~~l----~~CPiCR~~i~~~ 431 (435)
|+..|.||++...++++ +|||. ||..|+.++ ..||+||++|+.+
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~V 50 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIESV 50 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SEE
T ss_pred CcCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcCC
Confidence 35689999999999555 99999 999999887 6899999998753
No 9
>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at its N-terminus the VWA and cache domains, The alpha 2 delta gene family has orthologues in D. melanogaster and C. elegans but none have been detected in aither A. thaliana or yeast. The exact biochemical function of the VWA domain is not known but the alpha 2 delta complex has been shown to regulate various functional properties of the channel complex.
Probab=98.67 E-value=2.3e-07 Score=86.15 Aligned_cols=147 Identities=14% Similarity=0.240 Sum_probs=99.7
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCCCCccceeeeCCCCCCCCcccccCCCC--
Q 013848 94 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDE-- 171 (435)
Q Consensus 94 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~yD~D~~ip~fGFGa~~~~~~~vF~~~~~~-- 171 (435)
.++++.||.|+|+.. +..+.|-..+..++..+..+..|-++.|+..... ++++..+.
T Consensus 14 ~~vv~llD~SgSM~~------------------~~l~~ak~~~~~ll~~l~~~d~v~lv~F~~~~~~---~~~~~~~~~~ 72 (190)
T cd01463 14 KDIVILLDVSGSMTG------------------QRLHLAKQTVSSILDTLSDNDFFNIITFSNEVNP---VVPCFNDTLV 72 (190)
T ss_pred ceEEEEEECCCCCCc------------------HHHHHHHHHHHHHHHhCCCCCEEEEEEeCCCeeE---EeeecccceE
Confidence 689999999999951 3456666677777888888889999999987432 22222111
Q ss_pred -CccCCHHHHHHHHHHhcCcccccCCCChHHHHHHHHHHHHh---c------CCceEEEEEEeCCcccccCCcccCccch
Q 013848 172 -KFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEH---S------GGQYHVLVIIADGQVTRSVDTEHGQLSS 241 (435)
Q Consensus 172 -~~~~G~~gvl~~Yr~~~~~v~l~GPT~fapII~~a~~~~~~---~------~~~Y~VLlIiTDG~i~d~~d~~~~~~~~ 241 (435)
......+.++ +.+..++..|.|++...|+.|.+..++ . ...-.++++||||..++
T Consensus 73 ~~~~~~~~~~~----~~l~~l~~~G~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~~~----------- 137 (190)
T cd01463 73 QATTSNKKVLK----EALDMLEAKGIANYTKALEFAFSLLLKNLQSNHSGSRSQCNQAIMLITDGVPEN----------- 137 (190)
T ss_pred ecCHHHHHHHH----HHHhhCCCCCcchHHHHHHHHHHHHHHhhhcccccccCCceeEEEEEeCCCCCc-----------
Confidence 0011233333 345677788999999999999887765 1 12236889999999764
Q ss_pred hHHHHHHHHHHh--cCCCeEEEEEecCCC--CCCcccccC
Q 013848 242 QEKKTVEAIVKA--SEYPLSIILVGVGDG--PWDMMREFD 277 (435)
Q Consensus 242 ~~~~T~~aIv~A--S~~PLSIIiVGVGd~--~f~~m~~lD 277 (435)
..+.++++... .+.++-|..||||.. +.+.|++|=
T Consensus 138 -~~~~~~~~~~~~~~~~~v~i~tigiG~~~~d~~~L~~lA 176 (190)
T cd01463 138 -YKEIFDKYNWDKNSEIPVRVFTYLIGREVTDRREIQWMA 176 (190)
T ss_pred -HhHHHHHhcccccCCCcEEEEEEecCCccccchHHHHHH
Confidence 34445554422 235899999999975 577777664
No 10
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=2.7e-09 Score=81.08 Aligned_cols=46 Identities=46% Similarity=1.058 Sum_probs=40.2
Q ss_pred CcccccccCCccce-eCCCCc-cchhhhhcCC-----CCCccccccccccccC
Q 013848 390 HVCPICLTDPKDMA-FGCGHQ-TCCGCGQDLD-----LCPICRSFIQTRIKLY 435 (435)
Q Consensus 390 ~~CpICl~~~~dv~-~~CGH~-fC~~C~~~l~-----~CPiCR~~i~~~irly 435 (435)
.+|-||++.+.|.+ +-|||+ .|.+|+.+++ .||+||.+|..+||.|
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvIkTY 60 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVIKTY 60 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHHHhh
Confidence 68999999999955 499999 5779998764 6999999999999876
No 11
>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell. In association with invasion, T. gondii sequentially discharges three sets of secretory organelles beginning with the micronemes, which contain adhesive proteins involved in parasite attachment to a host cell. Deployed as protein complexes, several micronemal proteins possess vertebrate-derived adhesive sequences that function in binding receptors. The VWA domain likely mediates the protein-protein interactions of these with their interacting partners.
Probab=98.61 E-value=4.3e-07 Score=83.63 Aligned_cols=168 Identities=14% Similarity=0.178 Sum_probs=107.5
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccC---CCCccceeeeCCCCCCCCcccccCCCC
Q 013848 95 NLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFD---EDNLIPCFGFGDASTHDQEVFSFYPDE 171 (435)
Q Consensus 95 nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~yD---~D~~ip~fGFGa~~~~~~~vF~~~~~~ 171 (435)
++++.||-|+|++. .|-+.++...+..+++.+. ++-.+-++.|+.... .+++|....
T Consensus 2 Dv~~vlD~SgSm~~-----------------~~~~~~~k~~~~~~~~~~~~~~~~~~vglv~Fs~~~~---~~~~l~~~~ 61 (186)
T cd01471 2 DLYLLVDGSGSIGY-----------------SNWVTHVVPFLHTFVQNLNISPDEINLYLVTFSTNAK---ELIRLSSPN 61 (186)
T ss_pred cEEEEEeCCCCccc-----------------hhhHHHHHHHHHHHHHhcccCCCceEEEEEEecCCce---EEEECCCcc
Confidence 68999999999852 1336677777777777764 445899999997532 234443321
Q ss_pred CccCCHHHHHHHHHHhcCcccccCCCChHHHHHHHHHHHHhc----CCceEEEEEEeCCcccccCCcccCccchhHHHHH
Q 013848 172 KFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHS----GGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTV 247 (435)
Q Consensus 172 ~~~~G~~gvl~~Yr~~~~~v~l~GPT~fapII~~a~~~~~~~----~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~T~ 247 (435)
-...+.+++.-+.+......+|-|+++..++.|.+...+. ...-.+++|||||..++ ..+++
T Consensus 62 --~~~~~~~~~~i~~l~~~~~~~G~T~l~~aL~~a~~~l~~~~~~r~~~~~~villTDG~~~~------------~~~~~ 127 (186)
T cd01471 62 --STNKDLALNAIRALLSLYYPNGSTNTTSALLVVEKHLFDTRGNRENAPQLVIIMTDGIPDS------------KFRTL 127 (186)
T ss_pred --ccchHHHHHHHHHHHhCcCCCCCccHHHHHHHHHHHhhccCCCcccCceEEEEEccCCCCC------------Ccchh
Confidence 1123332222233333345678999999999999887652 12335789999999765 22344
Q ss_pred HHHHHhcCCCeEEEEEecCC-CCCCcccccCCCC-Cccccceeeeeccccc
Q 013848 248 EAIVKASEYPLSIILVGVGD-GPWDMMREFDDNI-PARAFDNFQFVNFTEI 296 (435)
Q Consensus 248 ~aIv~AS~~PLSIIiVGVGd-~~f~~m~~lDd~~-~~R~~DnvqFV~f~~~ 296 (435)
++..++-+..+-|.+||||. .+.+.|+.|-+.. ..-..++.-+.+|+++
T Consensus 128 ~~a~~l~~~gv~v~~igiG~~~d~~~l~~ia~~~~~~~~~~~~~~~~~~~~ 178 (186)
T cd01471 128 KEARKLRERGVIIAVLGVGQGVNHEENRSLVGCDPDDSPCPLYLQSSWSEV 178 (186)
T ss_pred HHHHHHHHCCCEEEEEEeehhhCHHHHHHhcCCCCCCCCCCeeecCCHHHH
Confidence 44455556689999999997 4777777776522 1112466666666665
No 12
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.
Probab=98.60 E-value=7.9e-07 Score=76.46 Aligned_cols=146 Identities=18% Similarity=0.347 Sum_probs=99.3
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCC---CCccceeeeCCCCCCCCcccccCCCC
Q 013848 95 NLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDE---DNLIPCFGFGDASTHDQEVFSFYPDE 171 (435)
Q Consensus 95 nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~yD~---D~~ip~fGFGa~~~~~~~vF~~~~~~ 171 (435)
++++.||.|+|+. ....+.+...+..++..+.. ...+-+++|+.... .++.+...
T Consensus 2 ~v~~viD~S~Sm~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~f~~~~~---~~~~~~~~- 59 (161)
T cd00198 2 DIVFLLDVSGSMG------------------GEKLDKAKEALKALVSSLSASPPGDRVGLVTFGSNAR---VVLPLTTD- 59 (161)
T ss_pred cEEEEEeCCCCcC------------------cchHHHHHHHHHHHHHhcccCCCCcEEEEEEecCccc---eeeccccc-
Confidence 6899999999982 24566677777777777765 77899999997422 12222211
Q ss_pred CccCCHHHHHHHHHHhcCcccccCCCChHHHHHHHHHHHHhc--CCceEEEEEEeCCcccccCCcccCccchhHHHHHHH
Q 013848 172 KFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHS--GGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEA 249 (435)
Q Consensus 172 ~~~~G~~gvl~~Yr~~~~~v~l~GPT~fapII~~a~~~~~~~--~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~T~~a 249 (435)
...+.+.+.-... .. ...|.|.+...++.+.+...+. .....+|++||||..++. .....+.
T Consensus 60 ---~~~~~~~~~~~~~-~~-~~~~~t~~~~al~~~~~~~~~~~~~~~~~~lvvitDg~~~~~-----------~~~~~~~ 123 (161)
T cd00198 60 ---TDKADLLEAIDAL-KK-GLGGGTNIGAALRLALELLKSAKRPNARRVIILLTDGEPNDG-----------PELLAEA 123 (161)
T ss_pred ---CCHHHHHHHHHhc-cc-CCCCCccHHHHHHHHHHHhcccCCCCCceEEEEEeCCCCCCC-----------cchhHHH
Confidence 2333333332222 11 3778999999999999998764 456789999999987751 1234455
Q ss_pred HHHhcCCCeEEEEEecCC-CCCCcccccCC
Q 013848 250 IVKASEYPLSIILVGVGD-GPWDMMREFDD 278 (435)
Q Consensus 250 Iv~AS~~PLSIIiVGVGd-~~f~~m~~lDd 278 (435)
+..+....+.|.+||+|+ .+-..++.|+.
T Consensus 124 ~~~~~~~~v~v~~v~~g~~~~~~~l~~l~~ 153 (161)
T cd00198 124 ARELRKLGITVYTIGIGDDANEDELKEIAD 153 (161)
T ss_pred HHHHHHcCCEEEEEEcCCCCCHHHHHHHhc
Confidence 555666799999999998 66666666655
No 13
>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=98.53 E-value=4.6e-07 Score=83.11 Aligned_cols=144 Identities=19% Similarity=0.269 Sum_probs=95.4
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccC---CCCccceeeeCCCCCCCCcccccCCC
Q 013848 94 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFD---EDNLIPCFGFGDASTHDQEVFSFYPD 170 (435)
Q Consensus 94 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~yD---~D~~ip~fGFGa~~~~~~~vF~~~~~ 170 (435)
+++++.||.|+|+... . ...-.+|+..+...|...+ ++..+-++.|+.... .++++...
T Consensus 4 ~~v~~llD~SgSM~~~--------~-------~~~~k~a~~~~~~~l~~~~~~~~~~~v~ii~F~~~a~---~~~~l~~~ 65 (176)
T cd01464 4 LPIYLLLDTSGSMAGE--------P-------IEALNQGLQMLQSELRQDPYALESVEISVITFDSAAR---VIVPLTPL 65 (176)
T ss_pred CCEEEEEECCCCCCCh--------H-------HHHHHHHHHHHHHHHhcChhhccccEEEEEEecCCce---EecCCccH
Confidence 6889999999999521 1 1233455555555554422 345799999998542 23444321
Q ss_pred CCccCCHHHHHHHHHHhcCcccccCCCChHHHHHHHHHHHHhcCCc---------eEEEEEEeCCcccccCCcccCccch
Q 013848 171 EKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSGGQ---------YHVLVIIADGQVTRSVDTEHGQLSS 241 (435)
Q Consensus 171 ~~~~~G~~gvl~~Yr~~~~~v~l~GPT~fapII~~a~~~~~~~~~~---------Y~VLlIiTDG~i~d~~d~~~~~~~~ 241 (435)
. ......+...|-|++...+++|.+........ -.++|+||||..+|
T Consensus 66 -------~------~~~~~~l~~~GgT~l~~aL~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~~~----------- 121 (176)
T cd01464 66 -------E------SFQPPRLTASGGTSMGAALELALDCIDRRVQRYRADQKGDWRPWVFLLTDGEPTD----------- 121 (176)
T ss_pred -------H------hcCCCcccCCCCCcHHHHHHHHHHHHHHHHHHhcccCcCCcCcEEEEEcCCCCCc-----------
Confidence 1 01234567789999999999999886543111 24789999999875
Q ss_pred hHHHHHHHHHHhcCCCeEEEEEecCC-CCCCcccccCCC
Q 013848 242 QEKKTVEAIVKASEYPLSIILVGVGD-GPWDMMREFDDN 279 (435)
Q Consensus 242 ~~~~T~~aIv~AS~~PLSIIiVGVGd-~~f~~m~~lDd~ 279 (435)
+.....+++.++-...+-|..||||. .+.+.|++|-+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~i~~igiG~~~~~~~L~~ia~~ 160 (176)
T cd01464 122 DLTAAIERIKEARDSKGRIVACAVGPKADLDTLKQITEG 160 (176)
T ss_pred hHHHHHHHHHhhcccCCcEEEEEeccccCHHHHHHHHCC
Confidence 23444577877777789999999995 677777777653
No 14
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=98.48 E-value=1.1e-06 Score=77.17 Aligned_cols=145 Identities=17% Similarity=0.252 Sum_probs=96.0
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccc---cCCCCccceeeeCCCCCCCCcccccCCCC
Q 013848 95 NLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSS---FDEDNLIPCFGFGDASTHDQEVFSFYPDE 171 (435)
Q Consensus 95 nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~---yD~D~~ip~fGFGa~~~~~~~vF~~~~~~ 171 (435)
++++.+|.|+|+.. ..++.+...+..++.. .+.+-.+-++.|++... .++.+....
T Consensus 2 di~~llD~S~Sm~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~li~f~~~~~---~~~~~~~~~ 60 (161)
T cd01450 2 DIVFLLDGSESVGP------------------ENFEKVKDFIEKLVEKLDIGPDKTRVGLVQYSDDVR---VEFSLNDYK 60 (161)
T ss_pred cEEEEEeCCCCcCH------------------HHHHHHHHHHHHHHHheeeCCCceEEEEEEEcCCce---EEEECCCCC
Confidence 68899999999952 1444555555555444 44577999999998643 233443221
Q ss_pred CccCCHHHHHHHHHHhcCcccccCCCChHHHHHHHHHHHHhcC----CceEEEEEEeCCcccccCCcccCccchhHHHHH
Q 013848 172 KFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSG----GQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTV 247 (435)
Q Consensus 172 ~~~~G~~gvl~~Yr~~~~~v~l~GPT~fapII~~a~~~~~~~~----~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~T~ 247 (435)
..+.+++......... .|-|++...++.+.+...+.. ..-.++++||||..++. .+..
T Consensus 61 ----~~~~~~~~i~~~~~~~--~~~t~~~~al~~a~~~~~~~~~~~~~~~~~iiliTDG~~~~~------------~~~~ 122 (161)
T cd01450 61 ----SKDDLLKAVKNLKYLG--GGGTNTGKALQYALEQLFSESNARENVPKVIIVLTDGRSDDG------------GDPK 122 (161)
T ss_pred ----CHHHHHHHHHhcccCC--CCCccHHHHHHHHHHHhcccccccCCCCeEEEEECCCCCCCC------------cchH
Confidence 3455555444322111 137999999999999887653 46689999999988751 1334
Q ss_pred HHHHHhcCCCeEEEEEecCCCCCCcccccCC
Q 013848 248 EAIVKASEYPLSIILVGVGDGPWDMMREFDD 278 (435)
Q Consensus 248 ~aIv~AS~~PLSIIiVGVGd~~f~~m~~lDd 278 (435)
+++.+..+..+-|++||||..+.+.|++|-+
T Consensus 123 ~~~~~~~~~~v~v~~i~~g~~~~~~l~~la~ 153 (161)
T cd01450 123 EAAAKLKDEGIKVFVVGVGPADEEELREIAS 153 (161)
T ss_pred HHHHHHHHCCCEEEEEeccccCHHHHHHHhC
Confidence 4444445558999999999988888887754
No 15
>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most,
Probab=98.44 E-value=2e-06 Score=77.59 Aligned_cols=141 Identities=14% Similarity=0.257 Sum_probs=93.4
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCCCCccceeeeCCCCCCCCcccccCCCCCcc
Q 013848 95 NLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKFC 174 (435)
Q Consensus 95 nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~yD~D~~ip~fGFGa~~~~~~~vF~~~~~~~~~ 174 (435)
++++.||.|+|+.- +..+.|-.++..+++.+.++..+-+++|+..... ++++.+.+.
T Consensus 2 ~v~~vlD~S~SM~~------------------~rl~~ak~a~~~l~~~l~~~~~~~li~F~~~~~~---~~~~~~~~~-- 58 (155)
T cd01466 2 DLVAVLDVSGSMAG------------------DKLQLVKHALRFVISSLGDADRLSIVTFSTSAKR---LSPLRRMTA-- 58 (155)
T ss_pred cEEEEEECCCCCCc------------------HHHHHHHHHHHHHHHhCCCcceEEEEEecCCccc---cCCCcccCH--
Confidence 68999999999951 2445555556666666666667999999986432 233332111
Q ss_pred CCHHHHHHHHHHhcCcccccCCCChHHHHHHHHHHHHhcC--CceEEEEEEeCCcccccCCcccCccchhHHHHHHHHHH
Q 013848 175 NGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSG--GQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVK 252 (435)
Q Consensus 175 ~G~~gvl~~Yr~~~~~v~l~GPT~fapII~~a~~~~~~~~--~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~T~~aIv~ 252 (435)
.+.+.+ .+.+..+...|-|+...-++.+.+..++.. +.-.++++||||..++ . .++..
T Consensus 59 ~~~~~~----~~~i~~~~~~g~T~~~~al~~a~~~~~~~~~~~~~~~iillTDG~~~~------------~----~~~~~ 118 (155)
T cd01466 59 KGKRSA----KRVVDGLQAGGGTNVVGGLKKALKVLGDRRQKNPVASIMLLSDGQDNH------------G----AVVLR 118 (155)
T ss_pred HHHHHH----HHHHHhccCCCCccHHHHHHHHHHHHhhcccCCCceEEEEEcCCCCCc------------c----hhhhc
Confidence 112222 334444677888999999999999876542 2346889999998764 1 22344
Q ss_pred hcCCCeEEEEEecC-CCCCCcccccCC
Q 013848 253 ASEYPLSIILVGVG-DGPWDMMREFDD 278 (435)
Q Consensus 253 AS~~PLSIIiVGVG-d~~f~~m~~lDd 278 (435)
+.+.++-|..||+| +.+.+.|+++=+
T Consensus 119 ~~~~~v~v~~igig~~~~~~~l~~iA~ 145 (155)
T cd01466 119 ADNAPIPIHTFGLGASHDPALLAFIAE 145 (155)
T ss_pred ccCCCceEEEEecCCCCCHHHHHHHHh
Confidence 56679999999999 456666766643
No 16
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.42 E-value=9.4e-08 Score=90.32 Aligned_cols=46 Identities=30% Similarity=0.761 Sum_probs=38.2
Q ss_pred CCCCCCcccccccCCcc-ceeCCCCccchhhhhcC--------------------CCCCcccccccc
Q 013848 385 STSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL--------------------DLCPICRSFIQT 430 (435)
Q Consensus 385 ~l~e~~~CpICl~~~~d-v~~~CGH~fC~~C~~~l--------------------~~CPiCR~~i~~ 430 (435)
...++..|+||++..++ ++.+|||.||..|+.+| ..||+||..+..
T Consensus 14 ~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 14 DSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred cCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 34467899999999999 55699999999999754 269999999864
No 17
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.40 E-value=6.7e-08 Score=70.03 Aligned_cols=33 Identities=48% Similarity=1.084 Sum_probs=25.4
Q ss_pred ccccccCCcc-ceeCCCCccchhhhhcC--------CCCCcc
Q 013848 392 CPICLTDPKD-MAFGCGHQTCCGCGQDL--------DLCPIC 424 (435)
Q Consensus 392 CpICl~~~~d-v~~~CGH~fC~~C~~~l--------~~CPiC 424 (435)
|+||++.+++ ++++|||+||..|+.++ ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999999 77899999999999754 268887
No 18
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.
Probab=98.38 E-value=7.6e-06 Score=74.80 Aligned_cols=150 Identities=13% Similarity=0.162 Sum_probs=94.5
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCC-CCccceeeeCCCCCCC--CcccccCCCC
Q 013848 95 NLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDE-DNLIPCFGFGDASTHD--QEVFSFYPDE 171 (435)
Q Consensus 95 nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~yD~-D~~ip~fGFGa~~~~~--~~vF~~~~~~ 171 (435)
.+.+.||.|+|+.. .+..+.|-.++..++..... +-.+-+|+|+...+.. ..++...+-+
T Consensus 2 ~v~~llD~SgSM~~-----------------~~kl~~ak~a~~~l~~~l~~~~d~~~l~~F~~~~~~~~~~~~~~~~~~~ 64 (174)
T cd01454 2 AVTLLLDLSGSMRS-----------------DRRIDVAKKAAVLLAEALEACGVPHAILGFTTDAGGRERVRWIKIKDFD 64 (174)
T ss_pred EEEEEEECCCCCCC-----------------CcHHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCCccceEEEEecCcc
Confidence 47899999999952 13445555544444444443 5589999998763111 1122110101
Q ss_pred CccCCHHHHHHHHHHhcCcccccCCCChHHHHHHHHHHHHhcCCceEEEEEEeCCcccccCCcccCccchhHHHHHHHHH
Q 013848 172 KFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIV 251 (435)
Q Consensus 172 ~~~~G~~gvl~~Yr~~~~~v~l~GPT~fapII~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~T~~aIv 251 (435)
. . +..+.++.+..+...|-|.+...|+.+.+...+....--++++||||..++. +...+++. ..++.++++.
T Consensus 65 ~---~---~~~~~~~~l~~~~~~g~T~~~~al~~a~~~l~~~~~~~~~iiliTDG~~~~~-~~~~~~~~-~~~~~~~~~~ 136 (174)
T cd01454 65 E---S---LHERARKRLAALSPGGNTRDGAAIRHAAERLLARPEKRKILLVISDGEPNDL-DYYEGNVF-ATEDALRAVI 136 (174)
T ss_pred c---c---cchhHHHHHHccCCCCCCcHHHHHHHHHHHHhcCCCcCcEEEEEeCCCcCcc-cccCcchh-HHHHHHHHHH
Confidence 0 0 1122233444566678899999999999988765444568999999998763 22223331 2445566688
Q ss_pred HhcCCCeEEEEEecCCCC
Q 013848 252 KASEYPLSIILVGVGDGP 269 (435)
Q Consensus 252 ~AS~~PLSIIiVGVGd~~ 269 (435)
+|-+.-+.+..||||+..
T Consensus 137 ~~~~~gi~v~~igig~~~ 154 (174)
T cd01454 137 EARKLGIEVFGITIDRDA 154 (174)
T ss_pred HHHhCCcEEEEEEecCcc
Confidence 888889999999999865
No 19
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=98.38 E-value=3.2e-06 Score=74.73 Aligned_cols=139 Identities=19% Similarity=0.283 Sum_probs=95.9
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCCCCccceeeeCCCCCCCCcccccCCCCCcc
Q 013848 95 NLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKFC 174 (435)
Q Consensus 95 nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~yD~D~~ip~fGFGa~~~~~~~vF~~~~~~~~~ 174 (435)
+++|.||-|+|+.+.+. ..+..++|...+..++..+..+ .|-++.|+.... -++.+ .
T Consensus 1 dvv~v~D~SgSM~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~-~v~l~~f~~~~~---~~~~~------t 57 (172)
T PF13519_consen 1 DVVFVLDNSGSMNGYDG-------------NRTRIDQAKDALNELLANLPGD-RVGLVSFSDSSR---TLSPL------T 57 (172)
T ss_dssp EEEEEEE-SGGGGTTTS-------------SS-HHHHHHHHHHHHHHHHTTS-EEEEEEESTSCE---EEEEE------E
T ss_pred CEEEEEECCcccCCCCC-------------CCcHHHHHHHHHHHHHHHCCCC-EEEEEEeccccc---ccccc------c
Confidence 58999999999975311 2578899999999999988755 999999998531 12333 3
Q ss_pred CCHHHHHHHHHHhcCcccccCCCChHHHHHHHHHHHHhcCCceEEEEEEeCCcccccCCcccCccchhHHHHHHHHHHhc
Q 013848 175 NGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKAS 254 (435)
Q Consensus 175 ~G~~gvl~~Yr~~~~~v~l~GPT~fapII~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~T~~aIv~AS 254 (435)
.+.+.+.++-.+..+.....|.|.+...|+.|.++.......=-++|+||||.-+. ...+++..+.
T Consensus 58 ~~~~~~~~~l~~~~~~~~~~~~t~~~~al~~a~~~~~~~~~~~~~iv~iTDG~~~~--------------~~~~~~~~~~ 123 (172)
T PF13519_consen 58 SDKDELKNALNKLSPQGMPGGGTNLYDALQEAAKMLASSDNRRRAIVLITDGEDNS--------------SDIEAAKALK 123 (172)
T ss_dssp SSHHHHHHHHHTHHHHG--SSS--HHHHHHHHHHHHHC-SSEEEEEEEEES-TTHC--------------HHHHHHHHHH
T ss_pred ccHHHHHHHhhcccccccCccCCcHHHHHHHHHHHHHhCCCCceEEEEecCCCCCc--------------chhHHHHHHH
Confidence 46677777776666666668889999999999999877653446678899997553 2223566667
Q ss_pred CCCeEEEEEecCCCCC
Q 013848 255 EYPLSIILVGVGDGPW 270 (435)
Q Consensus 255 ~~PLSIIiVGVGd~~f 270 (435)
+..+.|.+||+|...-
T Consensus 124 ~~~i~i~~v~~~~~~~ 139 (172)
T PF13519_consen 124 QQGITIYTVGIGSDSD 139 (172)
T ss_dssp CTTEEEEEEEES-TT-
T ss_pred HcCCeEEEEEECCCcc
Confidence 8889999999998654
No 20
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=1.3e-07 Score=95.99 Aligned_cols=48 Identities=42% Similarity=1.037 Sum_probs=43.5
Q ss_pred CCCcccccccCCcccee-CCCCccch-hhhhcCCCCCccccccccccccC
Q 013848 388 DNHVCPICLTDPKDMAF-GCGHQTCC-GCGQDLDLCPICRSFIQTRIKLY 435 (435)
Q Consensus 388 e~~~CpICl~~~~dv~~-~CGH~fC~-~C~~~l~~CPiCR~~i~~~irly 435 (435)
....|.||++.+++.+| +|||++|| .|.+.+..||+||+.|...+++|
T Consensus 304 ~p~lcVVcl~e~~~~~fvpcGh~ccct~cs~~l~~CPvCR~rI~~~~k~y 353 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKSAVFVPCGHVCCCTLCSKHLPQCPVCRQRIRLVRKRY 353 (355)
T ss_pred CCCceEEecCCccceeeecCCcEEEchHHHhhCCCCchhHHHHHHHHHHh
Confidence 44689999999999666 99999888 99999999999999999988876
No 21
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=98.35 E-value=1.5e-05 Score=71.54 Aligned_cols=146 Identities=16% Similarity=0.229 Sum_probs=97.5
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCCCCccceeeeCCCCCCCCcccccCCCCCc
Q 013848 94 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKF 173 (435)
Q Consensus 94 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~yD~D~~ip~fGFGa~~~~~~~vF~~~~~~~~ 173 (435)
+|+++.+|.|.|+.. ...+.|...+..++..+..+..+-++.|+.... .++.+.+.
T Consensus 1 ~~~~~vlD~S~SM~~------------------~~~~~~k~a~~~~~~~l~~~~~v~li~f~~~~~---~~~~~~~~--- 56 (170)
T cd01465 1 LNLVFVIDRSGSMDG------------------PKLPLVKSALKLLVDQLRPDDRLAIVTYDGAAE---TVLPATPV--- 56 (170)
T ss_pred CcEEEEEECCCCCCC------------------hhHHHHHHHHHHHHHhCCCCCEEEEEEecCCcc---EEecCccc---
Confidence 489999999999941 126777777888888888888999999998632 22332221
Q ss_pred cCCHHHHHHHHHHhcCcccccCCCChHHHHHHHHHHHHhcC--CceEEEEEEeCCcccccCCcccCccchhHHHHHHHHH
Q 013848 174 CNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSG--GQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIV 251 (435)
Q Consensus 174 ~~G~~gvl~~Yr~~~~~v~l~GPT~fapII~~a~~~~~~~~--~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~T~~aIv 251 (435)
...+.+++ .+.+++..|.|++...++.+.+.+++.. ..--.+++||||..++.. .+.+...+++.
T Consensus 57 -~~~~~l~~----~l~~~~~~g~T~~~~al~~a~~~~~~~~~~~~~~~ivl~TDG~~~~~~--------~~~~~~~~~~~ 123 (170)
T cd01465 57 -RDKAAILA----AIDRLTAGGSTAGGAGIQLGYQEAQKHFVPGGVNRILLATDGDFNVGE--------TDPDELARLVA 123 (170)
T ss_pred -chHHHHHH----HHHcCCCCCCCCHHHHHHHHHHHHHhhcCCCCeeEEEEEeCCCCCCCC--------CCHHHHHHHHH
Confidence 12233332 3344556789999999999998886542 222567899999876411 12455566666
Q ss_pred HhcCCCeEEEEEecCCC-CCCccccc
Q 013848 252 KASEYPLSIILVGVGDG-PWDMMREF 276 (435)
Q Consensus 252 ~AS~~PLSIIiVGVGd~-~f~~m~~l 276 (435)
++.+..+-|..||||.. +...|+++
T Consensus 124 ~~~~~~v~i~~i~~g~~~~~~~l~~i 149 (170)
T cd01465 124 QKRESGITLSTLGFGDNYNEDLMEAI 149 (170)
T ss_pred HhhcCCeEEEEEEeCCCcCHHHHHHH
Confidence 66667888999999942 34445544
No 22
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=6.3e-08 Score=95.83 Aligned_cols=48 Identities=38% Similarity=1.134 Sum_probs=43.4
Q ss_pred CCCcccccccCCccce-eCCCCc-cchhhhhcCCCCCccccccccccccC
Q 013848 388 DNHVCPICLTDPKDMA-FGCGHQ-TCCGCGQDLDLCPICRSFIQTRIKLY 435 (435)
Q Consensus 388 e~~~CpICl~~~~dv~-~~CGH~-fC~~C~~~l~~CPiCR~~i~~~irly 435 (435)
...+|.||++.+.|.+ |+|||+ .|..|+.++..||+||+.|.+++++|
T Consensus 299 ~~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm~eCPICRqyi~rvvrif 348 (350)
T KOG4275|consen 299 TRRLCAICMDAPRDCVFLECGHMVTCTKCGKRMNECPICRQYIVRVVRIF 348 (350)
T ss_pred HHHHHHHHhcCCcceEEeecCcEEeehhhccccccCchHHHHHHHHHhhh
Confidence 3679999999999955 499999 67799999999999999999999887
No 23
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=1.4e-07 Score=87.66 Aligned_cols=48 Identities=35% Similarity=0.890 Sum_probs=38.0
Q ss_pred CCCcccccccCCcc-c--eeCCCCccchhhhhcC----CCCCccccccccc--cccC
Q 013848 388 DNHVCPICLTDPKD-M--AFGCGHQTCCGCGQDL----DLCPICRSFIQTR--IKLY 435 (435)
Q Consensus 388 e~~~CpICl~~~~d-v--~~~CGH~fC~~C~~~l----~~CPiCR~~i~~~--irly 435 (435)
....|||||+-... + ...|||.||..|++.. ..||+||..|+.+ ++||
T Consensus 130 ~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~~~rI~ 186 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQFHRIY 186 (187)
T ss_pred cccCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCcccccchhhheecc
Confidence 34789999998777 3 2499999999999865 4899999988754 4554
No 24
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=1.9e-07 Score=90.03 Aligned_cols=49 Identities=35% Similarity=0.735 Sum_probs=40.8
Q ss_pred CCCCcccccccCCcc-ceeCCCCccchhhhhcC-------CCCCccccccc--cccccC
Q 013848 387 SDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL-------DLCPICRSFIQ--TRIKLY 435 (435)
Q Consensus 387 ~e~~~CpICl~~~~d-v~~~CGH~fC~~C~~~l-------~~CPiCR~~i~--~~irly 435 (435)
.....|-|||+..++ |+..|||.||.-|+-+| +.||+|+..++ ++|.||
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY 103 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY 103 (230)
T ss_pred CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence 456899999999999 55699999999999877 36999999875 456665
No 25
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.28 E-value=2.7e-07 Score=90.15 Aligned_cols=46 Identities=30% Similarity=0.730 Sum_probs=36.8
Q ss_pred CCCcccccccCCcc--------cee-CCCCccchhhhhcC----CCCCccccccccccc
Q 013848 388 DNHVCPICLTDPKD--------MAF-GCGHQTCCGCGQDL----DLCPICRSFIQTRIK 433 (435)
Q Consensus 388 e~~~CpICl~~~~d--------v~~-~CGH~fC~~C~~~l----~~CPiCR~~i~~~ir 433 (435)
++..|+||++...+ .++ +|+|.||..|+..| ..||+||.++..+++
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~~v~~ 231 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFISVIK 231 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEeeEEee
Confidence 45799999997543 133 89999999999876 389999999887654
No 26
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=2.8e-07 Score=91.25 Aligned_cols=44 Identities=32% Similarity=0.767 Sum_probs=38.1
Q ss_pred CCCCcccccccCCcc-ceeCCCCccchhhhhcCC----CCCcccccccc
Q 013848 387 SDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDLD----LCPICRSFIQT 430 (435)
Q Consensus 387 ~e~~~CpICl~~~~d-v~~~CGH~fC~~C~~~l~----~CPiCR~~i~~ 430 (435)
+....|.+|++...+ .+.||||.||..|+..|. .||+||++++.
T Consensus 237 ~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~p 285 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKAECPLCREKFQP 285 (293)
T ss_pred CCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccccCCCcccccCCC
Confidence 445799999999999 667999999999998773 79999998864
No 27
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=3.8e-07 Score=92.68 Aligned_cols=49 Identities=37% Similarity=0.979 Sum_probs=40.8
Q ss_pred CCCCcccccccCCcc-ceeCCCCcc-chhhhhcCC----CCCccccccccccccC
Q 013848 387 SDNHVCPICLTDPKD-MAFGCGHQT-CCGCGQDLD----LCPICRSFIQTRIKLY 435 (435)
Q Consensus 387 ~e~~~CpICl~~~~d-v~~~CGH~f-C~~C~~~l~----~CPiCR~~i~~~irly 435 (435)
++..+|.||+...+| +++||.|.+ |..|++.++ .||+||++|...+.+|
T Consensus 288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll~i~ 342 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEELLEIY 342 (349)
T ss_pred cCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchHhhheec
Confidence 445799999999999 556999994 669998764 6999999999876654
No 28
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=98.20 E-value=9.4e-06 Score=76.36 Aligned_cols=160 Identities=16% Similarity=0.224 Sum_probs=95.6
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCCCCccceeeeCCCCCCC--C-cccccCCC
Q 013848 94 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHD--Q-EVFSFYPD 170 (435)
Q Consensus 94 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~yD~D~~ip~fGFGa~~~~~--~-~vF~~~~~ 170 (435)
.++++.||.|+|+.... +...+..+.|...+..++..+.++..|-++.|+...... . .+++..+-
T Consensus 21 ~~vv~vlD~SgSM~~~~------------~~~~~rl~~ak~a~~~~l~~l~~~~~v~lv~F~~~~~~~~~~~~~~p~~~~ 88 (206)
T cd01456 21 PNVAIVLDNSGSMREVD------------GGGETRLDNAKAALDETANALPDGTRLGLWTFSGDGDNPLDVRVLVPKGCL 88 (206)
T ss_pred CcEEEEEeCCCCCcCCC------------CCcchHHHHHHHHHHHHHHhCCCCceEEEEEecCCCCCCcccccccccccc
Confidence 58999999999996310 012356677777777777788778899999999854321 1 11111110
Q ss_pred CCccCCHH-HHHHHHHHhcCccc-ccCCCChHHHHHHHHHHHHhcCCceEEEEEEeCCcccccCCcccCccchhHHHHHH
Q 013848 171 EKFCNGFE-EVLRRYRELVPHLR-LAGPTSFAPIIEMAITIVEHSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVE 248 (435)
Q Consensus 171 ~~~~~G~~-gvl~~Yr~~~~~v~-l~GPT~fapII~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~T~~ 248 (435)
-....+.. .-.+...+.+..++ ..|-|+....|+.+.+..+ .+.-..+|+||||..++.. +..+...
T Consensus 89 ~~~~~~~~~~~~~~l~~~i~~i~~~~G~T~l~~aL~~a~~~l~--~~~~~~iillTDG~~~~~~---------~~~~~~~ 157 (206)
T cd01456 89 TAPVNGFPSAQRSALDAALNSLQTPTGWTPLAAALAEAAAYVD--PGRVNVVVLITDGEDTCGP---------DPCEVAR 157 (206)
T ss_pred ccccCCCCcccHHHHHHHHHhhcCCCCcChHHHHHHHHHHHhC--CCCcceEEEEcCCCccCCC---------CHHHHHH
Confidence 00111210 11222233455565 7788999999999988875 2333678999999876411 1223334
Q ss_pred HHHHh--cCCCeEEEEEecCCC-CCCccccc
Q 013848 249 AIVKA--SEYPLSIILVGVGDG-PWDMMREF 276 (435)
Q Consensus 249 aIv~A--S~~PLSIIiVGVGd~-~f~~m~~l 276 (435)
.+.+. ..-++.|.+||||.. +-+.|+++
T Consensus 158 ~~~~~~~~~~~i~i~~igiG~~~~~~~l~~i 188 (206)
T cd01456 158 ELAKRRTPAPPIKVNVIDFGGDADRAELEAI 188 (206)
T ss_pred HHHHhcCCCCCceEEEEEecCcccHHHHHHH
Confidence 44432 124788999999975 33444433
No 29
>cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation. They both contain three CCP or Sushi domains, a trypsin-type serine protease domain and a single VWA domain with a conserved metal ion dependent adhesion site referred commonly as the MIDAS motif. Orthologues of these molecules are found from echinoderms to chordates. During complement activation, the CCP domains are cleaved off, resulting in the formation of an active protease that cleaves and activates complement C3. Complement C2 is in the classical pathway and complement B is in the alternative pathway. The interaction of C2 with C4 and of factor B with C3b are both dependent on Mg2+ binding sites within the VWA domains and the VWA domain of factor B has been shown to mediate the binding of C3. This is consistent with the common inferred function of VWA domains as magnesium-dependent protein interaction domains.
Probab=98.17 E-value=2e-05 Score=73.59 Aligned_cols=153 Identities=17% Similarity=0.247 Sum_probs=91.3
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccc---cCCCCccceeeeCCCCCCCCcccccCCC
Q 013848 94 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSS---FDEDNLIPCFGFGDASTHDQEVFSFYPD 170 (435)
Q Consensus 94 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~---yD~D~~ip~fGFGa~~~~~~~vF~~~~~ 170 (435)
+|+++.||.|.|++. +.++++...+..++.. +..+-.+-++.|+.... .+|++...
T Consensus 1 ~di~~vlD~SgSM~~------------------~~~~~~k~~~~~l~~~l~~~~~~~~v~li~Fs~~~~---~~~~~~~~ 59 (198)
T cd01470 1 LNIYIALDASDSIGE------------------EDFDEAKNAIKTLIEKISSYEVSPRYEIISYASDPK---EIVSIRDF 59 (198)
T ss_pred CcEEEEEECCCCccH------------------HHHHHHHHHHHHHHHHccccCCCceEEEEEecCCce---EEEecccC
Confidence 479999999999951 2345555555555544 44456799999988642 23444321
Q ss_pred CCccCCHHHHHHHHHHhcCccc-ccCCCChHHHHHHHHHHHHhc----C----CceEEEEEEeCCcccccCCcccCccch
Q 013848 171 EKFCNGFEEVLRRYRELVPHLR-LAGPTSFAPIIEMAITIVEHS----G----GQYHVLVIIADGQVTRSVDTEHGQLSS 241 (435)
Q Consensus 171 ~~~~~G~~gvl~~Yr~~~~~v~-l~GPT~fapII~~a~~~~~~~----~----~~Y~VLlIiTDG~i~d~~d~~~~~~~~ 241 (435)
.-...+.++++-...-.... ..|-|++...|+++.+..... . ..-.++++||||+-++. . +
T Consensus 60 --~~~~~~~~~~~l~~~~~~~~~~~ggT~~~~Al~~~~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g------~-~- 129 (198)
T cd01470 60 --NSNDADDVIKRLEDFNYDDHGDKTGTNTAAALKKVYERMALEKVRNKEAFNETRHVIILFTDGKSNMG------G-S- 129 (198)
T ss_pred --CCCCHHHHHHHHHhCCcccccCccchhHHHHHHHHHHHHHHHHhcCccchhhcceEEEEEcCCCcCCC------C-C-
Confidence 11234455444333222221 246699999999887654211 0 12378999999987641 1 1
Q ss_pred hHHHHHHHHHHh----------cCCCeEEEEEecCCC-CCCcccccCC
Q 013848 242 QEKKTVEAIVKA----------SEYPLSIILVGVGDG-PWDMMREFDD 278 (435)
Q Consensus 242 ~~~~T~~aIv~A----------S~~PLSIIiVGVGd~-~f~~m~~lDd 278 (435)
..+..+.|.++ .+..+.|..||||+. +.+.|+++=.
T Consensus 130 -~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~iGvG~~~~~~~L~~iA~ 176 (198)
T cd01470 130 -PLPTVDKIKNLVYKNNKSDNPREDYLDVYVFGVGDDVNKEELNDLAS 176 (198)
T ss_pred -hhHHHHHHHHHHhcccccccchhcceeEEEEecCcccCHHHHHHHhc
Confidence 23344444443 334689999999964 7777877744
No 30
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=98.17 E-value=5.2e-05 Score=71.39 Aligned_cols=170 Identities=16% Similarity=0.243 Sum_probs=108.8
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHH-HHHHHHhhcccccCCC---CccceeeeCCCCCCCCcccccCCC
Q 013848 95 NLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYE-QAISIIGKTLSSFDED---NLIPCFGFGDASTHDQEVFSFYPD 170 (435)
Q Consensus 95 nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq-~AI~~Ig~vl~~yD~D---~~ip~fGFGa~~~~~~~vF~~~~~ 170 (435)
.+++.||-|.|.+ ...++ .++..+-.+++.|+-. -.+-+.=|++... ..|+|+.+
T Consensus 2 Di~fllD~S~Si~------------------~~~f~~~~~~f~~~lv~~l~i~~~~~rvgvv~fs~~~~---~~~~~~~~ 60 (192)
T cd01473 2 DLTLILDESASIG------------------YSNWRKDVIPFTEKIINNLNISKDKVHVGILLFAEKNR---DVVPFSDE 60 (192)
T ss_pred cEEEEEeCCCccc------------------HHHHHHHHHHHHHHHHHhCccCCCccEEEEEEecCCce---eEEecCcc
Confidence 5889999999985 13344 3556666677777644 4788888887542 23455432
Q ss_pred CCccCCHHHHHHHHHHhcCcccccCCCChHHHHHHHHHHHHhcC----CceEEEEEEeCCcccccCCcccCccchhHHHH
Q 013848 171 EKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSG----GQYHVLVIIADGQVTRSVDTEHGQLSSQEKKT 246 (435)
Q Consensus 171 ~~~~~G~~gvl~~Yr~~~~~v~l~GPT~fapII~~a~~~~~~~~----~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~T 246 (435)
. -..-++++++=+++-+.....|-|+....|+.|.+...... ..--|||+||||.-++. ++...
T Consensus 61 ~--~~~~~~l~~~i~~l~~~~~~~g~T~~~~AL~~a~~~~~~~~~~r~~~~kv~IllTDG~s~~~----------~~~~~ 128 (192)
T cd01473 61 E--RYDKNELLKKINDLKNSYRSGGETYIVEALKYGLKNYTKHGNRRKDAPKVTMLFTDGNDTSA----------SKKEL 128 (192)
T ss_pred c--ccCHHHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHhccCCCCcccCCeEEEEEecCCCCCc----------chhhH
Confidence 1 12345666665554433444688999999999988764322 12679999999998751 13345
Q ss_pred HHHHHHhcCCCeEEEEEecCCCCCCcccccCCCC-Cccccceeeeecccccc
Q 013848 247 VEAIVKASEYPLSIILVGVGDGPWDMMREFDDNI-PARAFDNFQFVNFTEIM 297 (435)
Q Consensus 247 ~~aIv~AS~~PLSIIiVGVGd~~f~~m~~lDd~~-~~R~~DnvqFV~f~~~~ 297 (435)
.++...+-+.-+-|..||||..+-..++.+=+.- ....-.+|=..+|+++.
T Consensus 129 ~~~a~~lk~~gV~i~~vGiG~~~~~el~~ia~~~~~~~~~~~~~~~~f~~l~ 180 (192)
T cd01473 129 QDISLLYKEENVKLLVVGVGAASENKLKLLAGCDINNDNCPNVIKTEWNNLN 180 (192)
T ss_pred HHHHHHHHHCCCEEEEEEeccccHHHHHHhcCCCCCCCCCCeEEecchhhHH
Confidence 5666677788999999999998766666554421 11112344445666653
No 31
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=1.1e-06 Score=92.68 Aligned_cols=42 Identities=43% Similarity=0.845 Sum_probs=35.4
Q ss_pred CCcccccccCCccce-eCCCCccchhhhhc---------CCCCCcccccccc
Q 013848 389 NHVCPICLTDPKDMA-FGCGHQTCCGCGQD---------LDLCPICRSFIQT 430 (435)
Q Consensus 389 ~~~CpICl~~~~dv~-~~CGH~fC~~C~~~---------l~~CPiCR~~i~~ 430 (435)
+..|||||+.+.-.+ ..|||.||+.|+.. +..||+||..|..
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 679999999988744 48999999999953 3489999999876
No 32
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=98.17 E-value=1.9e-05 Score=71.57 Aligned_cols=142 Identities=15% Similarity=0.220 Sum_probs=94.0
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccC---CCCccceeeeCCCCCCCCcccccCCCC
Q 013848 95 NLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFD---EDNLIPCFGFGDASTHDQEVFSFYPDE 171 (435)
Q Consensus 95 nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~yD---~D~~ip~fGFGa~~~~~~~vF~~~~~~ 171 (435)
++++.+|-|.|++. ..++++...+-.++..|+ ++..|-++.|+.... .+|.|+.
T Consensus 2 Dv~~vlD~S~Sm~~------------------~~~~~~k~~~~~l~~~~~~~~~~~rvgli~fs~~~~---~~~~l~~-- 58 (164)
T cd01482 2 DIVFLVDGSWSIGR------------------SNFNLVRSFLSSVVEAFEIGPDGVQVGLVQYSDDPR---TEFDLNA-- 58 (164)
T ss_pred CEEEEEeCCCCcCh------------------hhHHHHHHHHHHHHhheeeCCCceEEEEEEECCCee---EEEecCC--
Confidence 68999999999851 235555555555555554 567899999998642 2345531
Q ss_pred CccCCHHHHHHHHHHhcCcccccCCCChHHHHHHHHHHHHhc-----CCceEEEEEEeCCcccccCCcccCccchhHHHH
Q 013848 172 KFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHS-----GGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKT 246 (435)
Q Consensus 172 ~~~~G~~gvl~~Yr~~~~~v~l~GPT~fapII~~a~~~~~~~-----~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~T 246 (435)
....+.++++..++- ...|.|+....|+.+.+...+. ...-.++||||||.-++ +.++.
T Consensus 59 --~~~~~~l~~~l~~~~---~~~g~T~~~~aL~~a~~~~~~~~~~~r~~~~k~iillTDG~~~~-----------~~~~~ 122 (164)
T cd01482 59 --YTSKEDVLAAIKNLP---YKGGNTRTGKALTHVREKNFTPDAGARPGVPKVVILITDGKSQD-----------DVELP 122 (164)
T ss_pred --CCCHHHHHHHHHhCc---CCCCCChHHHHHHHHHHHhcccccCCCCCCCEEEEEEcCCCCCc-----------hHHHH
Confidence 234566666544331 1468899999999887654221 23457899999998654 23444
Q ss_pred HHHHHHhcCCCeEEEEEecCCCCCCcccccCC
Q 013848 247 VEAIVKASEYPLSIILVGVGDGPWDMMREFDD 278 (435)
Q Consensus 247 ~~aIv~AS~~PLSIIiVGVGd~~f~~m~~lDd 278 (435)
.+.+. +..+-|+.||+|+.+...|+++-+
T Consensus 123 a~~lk---~~gi~i~~ig~g~~~~~~L~~ia~ 151 (164)
T cd01482 123 ARVLR---NLGVNVFAVGVKDADESELKMIAS 151 (164)
T ss_pred HHHHH---HCCCEEEEEecCcCCHHHHHHHhC
Confidence 44444 468899999999988777776654
No 33
>PHA02926 zinc finger-like protein; Provisional
Probab=98.12 E-value=7.9e-07 Score=85.49 Aligned_cols=46 Identities=30% Similarity=0.634 Sum_probs=35.4
Q ss_pred CCCCcccccccCC------cc---cee-CCCCccchhhhhcCC----------CCCcccccccccc
Q 013848 387 SDNHVCPICLTDP------KD---MAF-GCGHQTCCGCGQDLD----------LCPICRSFIQTRI 432 (435)
Q Consensus 387 ~e~~~CpICl~~~------~d---v~~-~CGH~fC~~C~~~l~----------~CPiCR~~i~~~i 432 (435)
.++.+|+||++.. .+ .++ +|+|.||..|+..|. .||+||..+..++
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~ 233 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNIT 233 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeec
Confidence 3568999999863 12 234 999999999998764 3999999887543
No 34
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=98.12 E-value=2.7e-05 Score=70.29 Aligned_cols=141 Identities=16% Similarity=0.282 Sum_probs=91.0
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccC---CCCccceeeeCCCCCCCCcccccCCCC
Q 013848 95 NLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFD---EDNLIPCFGFGDASTHDQEVFSFYPDE 171 (435)
Q Consensus 95 nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~yD---~D~~ip~fGFGa~~~~~~~vF~~~~~~ 171 (435)
++++.||-|+|+.. ..++.+...+..++..|+ .+-.+-++-|+.... .++++..
T Consensus 2 Dvv~vlD~SgSm~~------------------~~~~~~k~~~~~~~~~l~~~~~~~~~giv~Fs~~~~---~~~~~~~-- 58 (164)
T cd01472 2 DIVFLVDGSESIGL------------------SNFNLVKDFVKRVVERLDIGPDGVRVGVVQYSDDPR---TEFYLNT-- 58 (164)
T ss_pred CEEEEEeCCCCCCH------------------HHHHHHHHHHHHHHhhcccCCCCeEEEEEEEcCcee---EEEecCC--
Confidence 78999999999951 234555555555555554 344899999987542 2344432
Q ss_pred CccCCHHHHHHHHHHhcCcccc-cCCCChHHHHHHHHHHHHhc-----CCceEEEEEEeCCcccccCCcccCccchhHHH
Q 013848 172 KFCNGFEEVLRRYRELVPHLRL-AGPTSFAPIIEMAITIVEHS-----GGQYHVLVIIADGQVTRSVDTEHGQLSSQEKK 245 (435)
Q Consensus 172 ~~~~G~~gvl~~Yr~~~~~v~l-~GPT~fapII~~a~~~~~~~-----~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~ 245 (435)
....+.+.++ +..++. .|.|+....++.|.+..... ...-.++++||||.-++ +..+
T Consensus 59 --~~~~~~~~~~----l~~l~~~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~~iiliTDG~~~~-----------~~~~ 121 (164)
T cd01472 59 --YRSKDDVLEA----VKNLRYIGGGTNTGKALKYVRENLFTEASGSREGVPKVLVVITDGKSQD-----------DVEE 121 (164)
T ss_pred --CCCHHHHHHH----HHhCcCCCCCchHHHHHHHHHHHhCCcccCCCCCCCEEEEEEcCCCCCc-----------hHHH
Confidence 1234444443 333443 78899999999999887642 23347889999997553 1222
Q ss_pred HHHHHHHhcCCCeEEEEEecCCCCCCcccccCC
Q 013848 246 TVEAIVKASEYPLSIILVGVGDGPWDMMREFDD 278 (435)
Q Consensus 246 T~~aIv~AS~~PLSIIiVGVGd~~f~~m~~lDd 278 (435)
....+ .+..+.|..||+|+.+.+.|+.+=+
T Consensus 122 ~~~~l---~~~gv~i~~ig~g~~~~~~L~~ia~ 151 (164)
T cd01472 122 PAVEL---KQAGIEVFAVGVKNADEEELKQIAS 151 (164)
T ss_pred HHHHH---HHCCCEEEEEECCcCCHHHHHHHHC
Confidence 22333 3467899999999988777777644
No 35
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.11 E-value=1e-06 Score=91.82 Aligned_cols=50 Identities=26% Similarity=0.495 Sum_probs=41.9
Q ss_pred CCCCCCCCCCcccccccCCcc-ceeCCCCccchhhhhcC----CCCCcccccccc
Q 013848 381 PPASSTSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL----DLCPICRSFIQT 430 (435)
Q Consensus 381 ~~~~~l~e~~~CpICl~~~~d-v~~~CGH~fC~~C~~~l----~~CPiCR~~i~~ 430 (435)
+....++....|+||++.+.+ ++++|||.||..|+..+ ..||.||..+..
T Consensus 18 ~~l~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 18 PSLYPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred ccccccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCCCCCCCCCCcccc
Confidence 345667888999999999999 55699999999999854 379999998754
No 36
>TIGR03788 marine_srt_targ marine proteobacterial sortase target protein. Members of this protein family are restricted to the Proteobacteria. Each contains a C-terminal sortase-recognition motif, transmembrane domain, and basic residues cluster at the the C-terminus, and is encoded adjacent to a sortase gene. This protein is frequently the only sortase target in its genome, which is as unusual its occurrence in Gram-negative rather than Gram-positive genomes. Many bacteria with this system are marine. In addition to the LPXTG signal, members carry a vault protein inter-alpha-trypsin inhibitor domain (pfam08487) and a von Willebrand factor type A domain (pfam00092).
Probab=98.11 E-value=2.3e-05 Score=85.68 Aligned_cols=145 Identities=23% Similarity=0.252 Sum_probs=96.3
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCCCCccceeeeCCCCCCCCcccccCCCCCc
Q 013848 94 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKF 173 (435)
Q Consensus 94 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~yD~D~~ip~fGFGa~~~~~~~vF~~~~~~~~ 173 (435)
.++++.||.|+|+. | +..++|-.++..+|....++..|-++.|+...... |... .
T Consensus 272 ~~vvfvlD~SgSM~--g----------------~~i~~ak~al~~~l~~L~~~d~~~ii~F~~~~~~~---~~~~----~ 326 (596)
T TIGR03788 272 RELVFVIDTSGSMA--G----------------ESIEQAKSALLLALDQLRPGDRFNIIQFDSDVTLL---FPVP----V 326 (596)
T ss_pred ceEEEEEECCCCCC--C----------------ccHHHHHHHHHHHHHhCCCCCEEEEEEECCcceEe---cccc----c
Confidence 47999999999995 1 23567777777788888888899999999865321 1110 0
Q ss_pred cCCHHHHHHHHHHhcCcccccCCCChHHHHHHHHHHHHhc-CCceEEEEEEeCCcccccCCcccCccchhHHHHHHHHHH
Q 013848 174 CNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHS-GGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVK 252 (435)
Q Consensus 174 ~~G~~gvl~~Yr~~~~~v~l~GPT~fapII~~a~~~~~~~-~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~T~~aIv~ 252 (435)
..+ ++-+++..+.+..++..|-|++...|+.|.+..... .+.--.+++||||.+.+ +.+.++++..
T Consensus 327 ~~~-~~~~~~a~~~i~~l~a~GgT~l~~aL~~a~~~~~~~~~~~~~~iillTDG~~~~------------~~~~~~~~~~ 393 (596)
T TIGR03788 327 PAT-AHNLARARQFVAGLQADGGTEMAGALSAALRDDGPESSGALRQVVFLTDGAVGN------------EDALFQLIRT 393 (596)
T ss_pred cCC-HHHHHHHHHHHhhCCCCCCccHHHHHHHHHHhhcccCCCceeEEEEEeCCCCCC------------HHHHHHHHHH
Confidence 011 122333344455677789999999999998763222 22334578899999875 5667777765
Q ss_pred hcCCCeEEEEEecCCC-CCCcccccC
Q 013848 253 ASEYPLSIILVGVGDG-PWDMMREFD 277 (435)
Q Consensus 253 AS~~PLSIIiVGVGd~-~f~~m~~lD 277 (435)
+. -..-|..||||+. +...|+.+-
T Consensus 394 ~~-~~~ri~tvGiG~~~n~~lL~~lA 418 (596)
T TIGR03788 394 KL-GDSRLFTVGIGSAPNSYFMRKAA 418 (596)
T ss_pred hc-CCceEEEEEeCCCcCHHHHHHHH
Confidence 43 2456778899975 555566553
No 37
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions. Because of their involvement in many biologically important adhesion processes, integrins are conserved across a wide range of multicellular animals. Integrins from invertebrates have been identified from six phyla. There are no data to date to suggest any immunological functions for the invertebrate integrins. The members of this sub-group have the conserved MIDAS motif that is charateristic of this domain suggesting the involvement of the integrins in the recognition and binding of multi-ligands.
Probab=98.10 E-value=6.6e-05 Score=67.33 Aligned_cols=134 Identities=21% Similarity=0.328 Sum_probs=88.6
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCC---CCccceeeeCCCCCCCCcccccCCC
Q 013848 94 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDE---DNLIPCFGFGDASTHDQEVFSFYPD 170 (435)
Q Consensus 94 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~yD~---D~~ip~fGFGa~~~~~~~vF~~~~~ 170 (435)
+++++.+|-|.|+.. .|+++...+..++..+.. .-.+-+.+|+.... ..-.|++...
T Consensus 1 ldv~~llD~S~Sm~~-------------------~~~~~~~~~~~~~~~l~~~~~~~~v~lv~f~~~~~-~~~~~~l~~~ 60 (163)
T cd01476 1 LDLLFVLDSSGSVRG-------------------KFEKYKKYIERIVEGLEIGPTATRVALITYSGRGR-QRVRFNLPKH 60 (163)
T ss_pred CCEEEEEeCCcchhh-------------------hHHHHHHHHHHHHHhcCCCCCCcEEEEEEEcCCCc-eEEEecCCCC
Confidence 378999999999841 255666666677777765 67899999988522 1123444321
Q ss_pred CCccCCHHHHHHHHHHhcCccc-ccCCCChHHHHHHHHHHHHhc----CCceEEEEEEeCCcccccCCcccCccchhHHH
Q 013848 171 EKFCNGFEEVLRRYRELVPHLR-LAGPTSFAPIIEMAITIVEHS----GGQYHVLVIIADGQVTRSVDTEHGQLSSQEKK 245 (435)
Q Consensus 171 ~~~~~G~~gvl~~Yr~~~~~v~-l~GPT~fapII~~a~~~~~~~----~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~ 245 (435)
+..+.++++-. .++ ..|.|+....|+.+.+...+. .+...+++++|||..++ +..+
T Consensus 61 ----~~~~~l~~~i~----~l~~~gg~T~l~~aL~~a~~~l~~~~~~r~~~~~~villTDG~~~~-----------~~~~ 121 (163)
T cd01476 61 ----NDGEELLEKVD----NLRFIGGTTATGAAIEVALQQLDPSEGRREGIPKVVVVLTDGRSHD-----------DPEK 121 (163)
T ss_pred ----CCHHHHHHHHH----hCccCCCCccHHHHHHHHHHHhccccCCCCCCCeEEEEECCCCCCC-----------chHH
Confidence 23344444433 233 467899999999999887521 12347899999998764 1344
Q ss_pred HHHHHHHhcCCCeEEEEEecCCC
Q 013848 246 TVEAIVKASEYPLSIILVGVGDG 268 (435)
Q Consensus 246 T~~aIv~AS~~PLSIIiVGVGd~ 268 (435)
..+.+.+ ..-+.|+.||+|+.
T Consensus 122 ~~~~l~~--~~~v~v~~vg~g~~ 142 (163)
T cd01476 122 QARILRA--VPNIETFAVGTGDP 142 (163)
T ss_pred HHHHHhh--cCCCEEEEEECCCc
Confidence 4555655 46688999999986
No 38
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.01 E-value=1e-06 Score=63.76 Aligned_cols=35 Identities=40% Similarity=1.040 Sum_probs=28.5
Q ss_pred cccccccCCcc----ceeCCCCccchhhhhcC----CCCCccc
Q 013848 391 VCPICLTDPKD----MAFGCGHQTCCGCGQDL----DLCPICR 425 (435)
Q Consensus 391 ~CpICl~~~~d----v~~~CGH~fC~~C~~~l----~~CPiCR 425 (435)
.|+||++.+.. +.++|||.||.+|+..| ..||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 69999998742 44599999999999876 4899997
No 39
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=98.00 E-value=7.7e-05 Score=67.83 Aligned_cols=140 Identities=19% Similarity=0.299 Sum_probs=84.8
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCCCCccceeeeCCCCCCCCcccccCCCCCc
Q 013848 94 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKF 173 (435)
Q Consensus 94 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~yD~D~~ip~fGFGa~~~~~~~vF~~~~~~~~ 173 (435)
.+++|.||.|.|+... .+. ..+-.+.|...+...+...+ +..+-++.|++... .++.+..+.
T Consensus 3 ~~vv~vlD~S~SM~~~---~~~---------~~~r~~~a~~~~~~~~~~~~-~~~v~lv~f~~~~~---~~~~~~~~~-- 64 (180)
T cd01467 3 RDIMIALDVSGSMLAQ---DFV---------KPSRLEAAKEVLSDFIDRRE-NDRIGLVVFAGAAF---TQAPLTLDR-- 64 (180)
T ss_pred ceEEEEEECCcccccc---cCC---------CCCHHHHHHHHHHHHHHhCC-CCeEEEEEEcCCee---eccCCCccH--
Confidence 5799999999999642 110 13445556666666666554 45899999987542 122222110
Q ss_pred cCCHHHHHHHHHHhcCcccccCCCChHHHHHHHHHHHHhcCCceEEEEEEeCCcccccCCcccCccchhHHHHHHHHHHh
Q 013848 174 CNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKA 253 (435)
Q Consensus 174 ~~G~~gvl~~Yr~~~~~v~l~GPT~fapII~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~T~~aIv~A 253 (435)
.-++.+++... .....|.|+...-|+.+.+........-.+++|||||.-+. |...+ .+..+ .+
T Consensus 65 -~~~~~~l~~l~----~~~~~g~T~l~~al~~a~~~l~~~~~~~~~iiliTDG~~~~------g~~~~--~~~~~---~~ 128 (180)
T cd01467 65 -ESLKELLEDIK----IGLAGQGTAIGDAIGLAIKRLKNSEAKERVIVLLTDGENNA------GEIDP--ATAAE---LA 128 (180)
T ss_pred -HHHHHHHHHhh----hcccCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCC------CCCCH--HHHHH---HH
Confidence 11233333322 23457889998888888888765544457899999997653 22222 22232 23
Q ss_pred cCCCeEEEEEecCC
Q 013848 254 SEYPLSIILVGVGD 267 (435)
Q Consensus 254 S~~PLSIIiVGVGd 267 (435)
....+-|..||||+
T Consensus 129 ~~~gi~i~~i~ig~ 142 (180)
T cd01467 129 KNKGVRIYTIGVGK 142 (180)
T ss_pred HHCCCEEEEEEecC
Confidence 35577888888887
No 40
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=97.98 E-value=4.7e-05 Score=67.96 Aligned_cols=142 Identities=18% Similarity=0.302 Sum_probs=88.8
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCCCCccceeeeCCCCCCCCcccccCCCCCcc
Q 013848 95 NLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKFC 174 (435)
Q Consensus 95 nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~yD~D~~ip~fGFGa~~~~~~~vF~~~~~~~~~ 174 (435)
++++.||.|.|+... ...-..||+. +|+...+...|-++.||.....-... +- ...-
T Consensus 2 ~vvilvD~S~Sm~g~----------------~~~~k~al~~---~l~~L~~~d~fnii~f~~~~~~~~~~--~~--~~~~ 58 (155)
T PF13768_consen 2 DVVILVDTSGSMSGE----------------KELVKDALRA---ILRSLPPGDRFNIIAFGSSVRPLFPG--LV--PATE 58 (155)
T ss_pred eEEEEEeCCCCCCCc----------------HHHHHHHHHH---HHHhCCCCCEEEEEEeCCEeeEcchh--HH--HHhH
Confidence 689999999999521 1233444444 55555566699999999853211110 00 0001
Q ss_pred CCHHHHHHHHHHhcCcccc-cCCCChHHHHHHHHHHHHhcCCceEEEEEEeCCcccccCCcccCccchhHHHHHHHHHHh
Q 013848 175 NGFEEVLRRYRELVPHLRL-AGPTSFAPIIEMAITIVEHSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKA 253 (435)
Q Consensus 175 ~G~~gvl~~Yr~~~~~v~l-~GPT~fapII~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~T~~aIv~A 253 (435)
.+.+.+++ -+..+.. .|.|+....++.|++.. ...+.-..+++||||..++ ..+++.+.+..+
T Consensus 59 ~~~~~a~~----~I~~~~~~~G~t~l~~aL~~a~~~~-~~~~~~~~IilltDG~~~~-----------~~~~i~~~v~~~ 122 (155)
T PF13768_consen 59 ENRQEALQ----WIKSLEANSGGTDLLAALRAALALL-QRPGCVRAIILLTDGQPVS-----------GEEEILDLVRRA 122 (155)
T ss_pred HHHHHHHH----HHHHhcccCCCccHHHHHHHHHHhc-ccCCCccEEEEEEeccCCC-----------CHHHHHHHHHhc
Confidence 23333333 3344565 79999999999888764 2223456778999999743 246777777654
Q ss_pred cCCCeEEEEEecCC-CCCCccccc
Q 013848 254 SEYPLSIILVGVGD-GPWDMMREF 276 (435)
Q Consensus 254 S~~PLSIIiVGVGd-~~f~~m~~l 276 (435)
. -.+-|..+|+|. .+...|++|
T Consensus 123 ~-~~~~i~~~~~g~~~~~~~L~~L 145 (155)
T PF13768_consen 123 R-GHIRIFTFGIGSDADADFLREL 145 (155)
T ss_pred C-CCceEEEEEECChhHHHHHHHH
Confidence 3 557788899997 456666655
No 41
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=97.94 E-value=2.6e-06 Score=60.29 Aligned_cols=33 Identities=42% Similarity=1.114 Sum_probs=26.4
Q ss_pred ccccccCCccc-e-eCCCCccchhhhhcC----CCCCcc
Q 013848 392 CPICLTDPKDM-A-FGCGHQTCCGCGQDL----DLCPIC 424 (435)
Q Consensus 392 CpICl~~~~dv-~-~~CGH~fC~~C~~~l----~~CPiC 424 (435)
|+||++...+. + ++|||.||.+|+.++ ..||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 89999999994 4 499999999999754 479887
No 42
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=97.93 E-value=4e-06 Score=64.38 Aligned_cols=42 Identities=19% Similarity=0.275 Sum_probs=36.0
Q ss_pred CCcccccccCCcc-ceeCCCCccchhhhhcC----CCCCcccccccc
Q 013848 389 NHVCPICLTDPKD-MAFGCGHQTCCGCGQDL----DLCPICRSFIQT 430 (435)
Q Consensus 389 ~~~CpICl~~~~d-v~~~CGH~fC~~C~~~l----~~CPiCR~~i~~ 430 (435)
+..|+||.+..++ ++++|||.||..|+..+ ..||+|+.++..
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~ 47 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLSHGTDPVTGQPLTH 47 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCCh
Confidence 3579999999999 66699999999999865 479999998853
No 43
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=97.93 E-value=0.0001 Score=68.46 Aligned_cols=146 Identities=15% Similarity=0.221 Sum_probs=93.9
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccC---------CCCccceeeeCCCCCCCCcc
Q 013848 94 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFD---------EDNLIPCFGFGDASTHDQEV 164 (435)
Q Consensus 94 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~yD---------~D~~ip~fGFGa~~~~~~~v 164 (435)
.++++.||-|.|++- ..++.+...+-.++..+. .+..+-++.|+.... .+
T Consensus 3 ~dvv~vlD~S~Sm~~------------------~~~~~~k~~~~~~~~~l~~~~~~~i~~~~~rvglv~fs~~~~---~~ 61 (186)
T cd01480 3 VDITFVLDSSESVGL------------------QNFDITKNFVKRVAERFLKDYYRKDPAGSWRVGVVQYSDQQE---VE 61 (186)
T ss_pred eeEEEEEeCCCccch------------------hhHHHHHHHHHHHHHHHhhhhccCCCCCceEEEEEEecCCce---ee
Confidence 589999999999951 235555555555555552 235789999987542 23
Q ss_pred cccCCCCCccCCHHHHHHHHHHhcCccc-ccCCCChHHHHHHHHHHHHh--cCCceEEEEEEeCCcccccCCcccCccch
Q 013848 165 FSFYPDEKFCNGFEEVLRRYRELVPHLR-LAGPTSFAPIIEMAITIVEH--SGGQYHVLVIIADGQVTRSVDTEHGQLSS 241 (435)
Q Consensus 165 F~~~~~~~~~~G~~gvl~~Yr~~~~~v~-l~GPT~fapII~~a~~~~~~--~~~~Y~VLlIiTDG~i~d~~d~~~~~~~~ 241 (435)
|++..+ -...+.+.++ +..++ ..|.|+....|+.|.+.... ..+.-.++|+||||..++..
T Consensus 62 ~~l~~~---~~~~~~l~~~----i~~l~~~gg~T~~~~AL~~a~~~l~~~~~~~~~~~iillTDG~~~~~~--------- 125 (186)
T cd01480 62 AGFLRD---IRNYTSLKEA----VDNLEYIGGGTFTDCALKYATEQLLEGSHQKENKFLLVITDGHSDGSP--------- 125 (186)
T ss_pred Eecccc---cCCHHHHHHH----HHhCccCCCCccHHHHHHHHHHHHhccCCCCCceEEEEEeCCCcCCCc---------
Confidence 455421 1234444443 44444 47899999999999988765 12334788999999864311
Q ss_pred hHHHHHHHHHHhcCCCeEEEEEecCCCCCCcccccC
Q 013848 242 QEKKTVEAIVKASEYPLSIILVGVGDGPWDMMREFD 277 (435)
Q Consensus 242 ~~~~T~~aIv~AS~~PLSIIiVGVGd~~f~~m~~lD 277 (435)
.....+++.++-+..+.|..||||..+-..|+++=
T Consensus 126 -~~~~~~~~~~~~~~gi~i~~vgig~~~~~~L~~IA 160 (186)
T cd01480 126 -DGGIEKAVNEADHLGIKIFFVAVGSQNEEPLSRIA 160 (186)
T ss_pred -chhHHHHHHHHHHCCCEEEEEecCccchHHHHHHH
Confidence 12233445556677999999999986655555543
No 44
>PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma. Mutant forms are involved in the aetiology of bleeding disorders []. In von Willebrand factor, the type A domain (vWF) is the prototype for a protein superfamily. The vWF domain is found in various plasma proteins: complement factors B, C2, CR3 and CR4; the integrins (I-domains); collagen types VI, VII, XII and XIV; and other extracellular proteins [, , ]. Although the majority of VWA-containing proteins are extracellular, the most ancient ones present in all eukaryotes are all intracellular proteins involved in functions such as transcription, DNA repair, ribosomal and membrane transport and the proteasome. A common feature appears to be involvement in multiprotein complexes. Proteins that incorporate vWF domains participate in numerous biological events (e.g. cell adhesion, migration, homing, pattern formation, and signal transduction), involving interaction with a large array of ligands []. A number of human diseases arise from mutations in VWA domains. Secondary structure prediction from 75 aligned vWF sequences has revealed a largely alternating sequence of alpha-helices and beta-strands []. Fold recognition algorithms were used to score sequence compatibility with a library of known structures: the vWF domain fold was predicted to be a doubly-wound, open, twisted beta-sheet flanked by alpha-helices []. 3D structures have been determined for the I-domains of integrins CD11b (with bound magnesium) [] and CD11a (with bound manganese) []. The domain adopts a classic alpha/beta Rossmann fold and contains an unusual metal ion coordination site at its surface. It has been suggested that this site represents a general metal ion-dependent adhesion site (MIDAS) for binding protein ligands []. The residues constituting the MIDAS motif in the CD11b and CD11a I-domains are completely conserved, but the manner in which the metal ion is coordinated differs slightly [].; GO: 0005515 protein binding; PDB: 2XGG_B 3ZQK_B 3GXB_A 3PPV_A 3PPX_A 3PPW_A 3PPY_A 1CQP_B 3TCX_B 2ICA_A ....
Probab=97.88 E-value=8.3e-05 Score=66.45 Aligned_cols=145 Identities=17% Similarity=0.255 Sum_probs=89.4
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhccc---ccCCCCccceeeeCCCCCCCCcccccCCCC
Q 013848 95 NLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLS---SFDEDNLIPCFGFGDASTHDQEVFSFYPDE 171 (435)
Q Consensus 95 nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~---~yD~D~~ip~fGFGa~~~~~~~vF~~~~~~ 171 (435)
++++.||-|.|++. +.++++...|-.++. ..+..-.+-+.-||.... .+|+|+..
T Consensus 1 DivflvD~S~sm~~------------------~~~~~~~~~v~~~i~~~~~~~~~~rv~iv~f~~~~~---~~~~~~~~- 58 (178)
T PF00092_consen 1 DIVFLVDTSGSMSG------------------DNFEKAKQFVKSIISRLSISNNGTRVGIVTFSDSAR---VLFSLTDY- 58 (178)
T ss_dssp EEEEEEE-STTSCH------------------HHHHHHHHHHHHHHHHSTBSTTSEEEEEEEESSSEE---EEEETTSH-
T ss_pred CEEEEEeCCCCCch------------------HHHHHHHHHHHHHHHhhhccccccccceeeeecccc---cccccccc-
Confidence 47999999999952 345555555555555 556666899999998654 34555322
Q ss_pred CccCCHHHHHHHHHHhcCcccccCCCChHHHHHHHHHHHHhc-----CCceEEEEEEeCCcccccCCcccCccchhHHHH
Q 013848 172 KFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHS-----GGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKT 246 (435)
Q Consensus 172 ~~~~G~~gvl~~Yr~~~~~v~l~GPT~fapII~~a~~~~~~~-----~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~T 246 (435)
...+.+++.= ........|-|+++..|+.|.+..... .....++++||||..++.. .....
T Consensus 59 ---~~~~~~~~~i--~~~~~~~~g~t~~~~aL~~a~~~l~~~~~~~r~~~~~~iiliTDG~~~~~~---------~~~~~ 124 (178)
T PF00092_consen 59 ---QSKNDLLNAI--NDSIPSSGGGTNLGAALKFAREQLFSSNNGGRPNSPKVIILITDGNSNDSD---------SPSEE 124 (178)
T ss_dssp ---SSHHHHHHHH--HTTGGCCBSSB-HHHHHHHHHHHTTSGGGTTGTTSEEEEEEEESSSSSSHS---------GHHHH
T ss_pred ---cccccccccc--cccccccchhhhHHHHHhhhhhcccccccccccccccceEEEEeecccCCc---------chHHH
Confidence 2344555432 233445678999999999999986543 4578999999999998721 12233
Q ss_pred HHHHHHhcCCCeEEEEEecCCCCCCcccccC
Q 013848 247 VEAIVKASEYPLSIILVGVGDGPWDMMREFD 277 (435)
Q Consensus 247 ~~aIv~AS~~PLSIIiVGVGd~~f~~m~~lD 277 (435)
...+.+. .-+.++.||++..+-..|+.|-
T Consensus 125 ~~~~~~~--~~i~~~~ig~~~~~~~~l~~la 153 (178)
T PF00092_consen 125 AANLKKS--NGIKVIAIGIDNADNEELRELA 153 (178)
T ss_dssp HHHHHHH--CTEEEEEEEESCCHHHHHHHHS
T ss_pred HHHHHHh--cCcEEEEEecCcCCHHHHHHHh
Confidence 3333323 4555555555445555555553
No 45
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=97.86 E-value=0.00036 Score=62.05 Aligned_cols=133 Identities=14% Similarity=0.129 Sum_probs=78.4
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCCCCccceeeeCCCCCCCCcccccCCCCCcc
Q 013848 95 NLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKFC 174 (435)
Q Consensus 95 nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~yD~D~~ip~fGFGa~~~~~~~vF~~~~~~~~~ 174 (435)
.+++.||.|+|+... ..-.-..++..++..+.. .+..+-++.|+... ....+. .-
T Consensus 2 ~v~illD~SgSM~~~---------------k~~~a~~~~~~l~~~~~~--~~~~v~li~F~~~~----~~~~~~----~~ 56 (152)
T cd01462 2 PVILLVDQSGSMYGA---------------PEEVAKAVALALLRIALA--ENRDTYLILFDSEF----QTKIVD----KT 56 (152)
T ss_pred CEEEEEECCCCCCCC---------------HHHHHHHHHHHHHHHHHH--cCCcEEEEEeCCCc----eEEecC----Cc
Confidence 578999999999521 011233444445554444 24478999998861 111111 12
Q ss_pred CCHHHHHHHHHHhcCcccccCCCChHHHHHHHHHHHHhcCCceEEEEEEeCCc-ccccCCcccCccchhHHHHHHHHHHh
Q 013848 175 NGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSGGQYHVLVIIADGQ-VTRSVDTEHGQLSSQEKKTVEAIVKA 253 (435)
Q Consensus 175 ~G~~gvl~~Yr~~~~~v~l~GPT~fapII~~a~~~~~~~~~~Y~VLlIiTDG~-i~d~~d~~~~~~~~~~~~T~~aIv~A 253 (435)
..+..+++. +..+...|-|++++.++.+.+..++....=.+++|||||. -.+ ..+..++...+
T Consensus 57 ~~~~~~~~~----l~~~~~~ggT~l~~al~~a~~~l~~~~~~~~~ivliTDG~~~~~------------~~~~~~~~~~~ 120 (152)
T cd01462 57 DDLEEPVEF----LSGVQLGGGTDINKALRYALELIERRDPRKADIVLITDGYEGGV------------SDELLREVELK 120 (152)
T ss_pred ccHHHHHHH----HhcCCCCCCcCHHHHHHHHHHHHHhcCCCCceEEEECCCCCCCC------------CHHHHHHHHHH
Confidence 345555543 3345667999999999999998876533336889999995 222 12332222333
Q ss_pred cCCCeEEEEEecCCC
Q 013848 254 SEYPLSIILVGVGDG 268 (435)
Q Consensus 254 S~~PLSIIiVGVGd~ 268 (435)
....+=|..||||+.
T Consensus 121 ~~~~~~v~~~~~g~~ 135 (152)
T cd01462 121 RSRVARFVALALGDH 135 (152)
T ss_pred HhcCcEEEEEEecCC
Confidence 344556667777763
No 46
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=97.85 E-value=7.1e-06 Score=59.63 Aligned_cols=36 Identities=39% Similarity=0.896 Sum_probs=29.9
Q ss_pred cccccccCCc--c--ceeCCCCccchhhhhcCC----CCCcccc
Q 013848 391 VCPICLTDPK--D--MAFGCGHQTCCGCGQDLD----LCPICRS 426 (435)
Q Consensus 391 ~CpICl~~~~--d--v~~~CGH~fC~~C~~~l~----~CPiCR~ 426 (435)
.|+||++.+. . .+++|||.||..|+..+. .||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 4899999882 2 345999999999999876 8999985
No 47
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional
Probab=97.79 E-value=0.00029 Score=76.55 Aligned_cols=141 Identities=13% Similarity=0.203 Sum_probs=96.2
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCCCC---ccceeeeCCCCCCCCcccccCCC
Q 013848 94 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDN---LIPCFGFGDASTHDQEVFSFYPD 170 (435)
Q Consensus 94 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~yD~D~---~ip~fGFGa~~~~~~~vF~~~~~ 170 (435)
++|+|.||-|+|.+. .|-.++|+..+..++..|+-.. .+-+..|+... ..+|.|...
T Consensus 43 lDIvFLLD~SgSMg~-----------------~Nfle~AK~Fa~~LV~~l~Is~D~V~VgiV~FSd~~---r~vfpL~s~ 102 (576)
T PTZ00441 43 VDLYLLVDGSGSIGY-----------------HNWITHVIPMLMGLIQQLNLSDDAINLYMSLFSNNT---TELIRLGSG 102 (576)
T ss_pred ceEEEEEeCCCccCC-----------------ccHHHHHHHHHHHHHHHhccCCCceEEEEEEeCCCc---eEEEecCCC
Confidence 689999999999962 2455778888888888885422 33346777653 234555332
Q ss_pred CCccCCHHHHHHHHHHhcCcccccCCCChHHHHHHHHHHHHhcC---CceEEEEEEeCCcccccCCcccCccchhHHHHH
Q 013848 171 EKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSG---GQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTV 247 (435)
Q Consensus 171 ~~~~~G~~gvl~~Yr~~~~~v~l~GPT~fapII~~a~~~~~~~~---~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~T~ 247 (435)
. -...+.++.+-.++...+...|-|++...+..|.+...+.+ ..--|+|+||||.-++ ..+++
T Consensus 103 ~--s~Dk~~aL~~I~sL~~~~~pgGgTnig~AL~~Aae~L~sr~~R~nvpKVVILLTDG~sns------------~~dvl 168 (576)
T PTZ00441 103 A--SKDKEQALIIVKSLRKTYLPYGKTNMTDALLEVRKHLNDRVNRENAIQLVILMTDGIPNS------------KYRAL 168 (576)
T ss_pred c--cccHHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhhcccccCCceEEEEEecCCCCC------------cccHH
Confidence 1 12345666666666666677899999999999888765431 2236889999999654 23445
Q ss_pred HHHHHhcCCCeEEEEEecCCC
Q 013848 248 EAIVKASEYPLSIILVGVGDG 268 (435)
Q Consensus 248 ~aIv~AS~~PLSIIiVGVGd~ 268 (435)
+++....+.-+-|..||||.+
T Consensus 169 eaAq~LR~~GVeI~vIGVG~g 189 (576)
T PTZ00441 169 EESRKLKDRNVKLAVIGIGQG 189 (576)
T ss_pred HHHHHHHHCCCEEEEEEeCCC
Confidence 555555567889999999974
No 48
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.
Probab=97.78 E-value=0.00015 Score=67.14 Aligned_cols=146 Identities=16% Similarity=0.211 Sum_probs=88.3
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccC-CCCccceeeeCCCCCCCCcccccCCCCC
Q 013848 94 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFD-EDNLIPCFGFGDASTHDQEVFSFYPDEK 172 (435)
Q Consensus 94 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~yD-~D~~ip~fGFGa~~~~~~~vF~~~~~~~ 172 (435)
+++++.||-|+|++. + +..++..+-.++..|+ .+..+-++.|+... ..+|+|+...
T Consensus 5 ~Dvv~llD~SgSm~~------------------~-~~~~~~~~~~l~~~~~~~~~rvglv~Fs~~~---~~~~~l~~~~- 61 (185)
T cd01474 5 FDLYFVLDKSGSVAA------------------N-WIEIYDFVEQLVDRFNSPGLRFSFITFSTRA---TKILPLTDDS- 61 (185)
T ss_pred eeEEEEEeCcCchhh------------------h-HHHHHHHHHHHHHHcCCCCcEEEEEEecCCc---eEEEeccccH-
Confidence 579999999999952 1 1122233333444443 34689999998753 2356664322
Q ss_pred ccCCHHHHHHHHHHhcCcccccCCCChHHHHHHHHHHHHh--cCCce--EEEEEEeCCcccccCCcccCccchhHHHHHH
Q 013848 173 FCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEH--SGGQY--HVLVIIADGQVTRSVDTEHGQLSSQEKKTVE 248 (435)
Q Consensus 173 ~~~G~~gvl~~Yr~~~~~v~l~GPT~fapII~~a~~~~~~--~~~~Y--~VLlIiTDG~i~d~~d~~~~~~~~~~~~T~~ 248 (435)
+.+.++.. .+..+...|-|+...-|+.|.+.+.. .++.. .++++||||..++.. ...+.+
T Consensus 62 -----~~~~~~l~-~l~~~~~~g~T~~~~aL~~a~~~l~~~~~~~r~~~~~villTDG~~~~~~----------~~~~~~ 125 (185)
T cd01474 62 -----SAIIKGLE-VLKKVTPSGQTYIHEGLENANEQIFNRNGGGRETVSVIIALTDGQLLLNG----------HKYPEH 125 (185)
T ss_pred -----HHHHHHHH-HHhccCCCCCCcHHHHHHHHHHHHHhhccCCCCCCeEEEEEcCCCcCCCC----------CcchHH
Confidence 12222221 23455557889999999999877632 22221 788999999975310 112233
Q ss_pred HHHHhcCCCeEEEEEecCCCCCCcccccCC
Q 013848 249 AIVKASEYPLSIILVGVGDGPWDMMREFDD 278 (435)
Q Consensus 249 aIv~AS~~PLSIIiVGVGd~~f~~m~~lDd 278 (435)
+...+-+.-+-|..||||+.+.+.|+.+=+
T Consensus 126 ~a~~l~~~gv~i~~vgv~~~~~~~L~~iA~ 155 (185)
T cd01474 126 EAKLSRKLGAIVYCVGVTDFLKSQLINIAD 155 (185)
T ss_pred HHHHHHHcCCEEEEEeechhhHHHHHHHhC
Confidence 333344567789999998888777777644
No 49
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=97.78 E-value=0.00021 Score=68.35 Aligned_cols=141 Identities=18% Similarity=0.271 Sum_probs=92.8
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCCC---CccceeeeCCCCCCCCcccccCCC
Q 013848 94 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDED---NLIPCFGFGDASTHDQEVFSFYPD 170 (435)
Q Consensus 94 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~yD~D---~~ip~fGFGa~~~~~~~vF~~~~~ 170 (435)
+++++.||-|+|.+ ...++++...+..++..|+-. -.+-++.|+.... .+|+|+..
T Consensus 3 ~DlvfllD~S~Sm~------------------~~~~~~~k~f~~~l~~~l~~~~~~~rvglv~fs~~~~---~~~~l~~~ 61 (224)
T cd01475 3 TDLVFLIDSSRSVR------------------PENFELVKQFLNQIIDSLDVGPDATRVGLVQYSSTVK---QEFPLGRF 61 (224)
T ss_pred ccEEEEEeCCCCCC------------------HHHHHHHHHHHHHHHHhcccCCCccEEEEEEecCcee---EEeccccc
Confidence 47999999999984 245888888888888888643 4899999998743 34666532
Q ss_pred CCccCCHHHHHHHHHHhcCccc-ccCCCChHHHHHHHHHHHH-h-cC---Cc---eEEEEEEeCCcccccCCcccCccch
Q 013848 171 EKFCNGFEEVLRRYRELVPHLR-LAGPTSFAPIIEMAITIVE-H-SG---GQ---YHVLVIIADGQVTRSVDTEHGQLSS 241 (435)
Q Consensus 171 ~~~~~G~~gvl~~Yr~~~~~v~-l~GPT~fapII~~a~~~~~-~-~~---~~---Y~VLlIiTDG~i~d~~d~~~~~~~~ 241 (435)
...+++.++-. .++ +.|.|.-.-.|+.|.+.+- + .+ .. -.|+|+||||.-.|
T Consensus 62 ----~~~~~l~~~i~----~i~~~~~~t~tg~AL~~a~~~~~~~~~g~r~~~~~~~kvvillTDG~s~~----------- 122 (224)
T cd01475 62 ----KSKADLKRAVR----RMEYLETGTMTGLAIQYAMNNAFSEAEGARPGSERVPRVGIVVTDGRPQD----------- 122 (224)
T ss_pred ----CCHHHHHHHHH----hCcCCCCCChHHHHHHHHHHHhCChhcCCCCCCCCCCeEEEEEcCCCCcc-----------
Confidence 23345555433 233 3566777777777766531 1 11 11 47899999998664
Q ss_pred hHHHHHHHHHHhcCCCeEEEEEecCCCCCCcccccC
Q 013848 242 QEKKTVEAIVKASEYPLSIILVGVGDGPWDMMREFD 277 (435)
Q Consensus 242 ~~~~T~~aIv~AS~~PLSIIiVGVGd~~f~~m~~lD 277 (435)
+..+..+.+. ..-+.|..||||+.+.+.|+++=
T Consensus 123 ~~~~~a~~lk---~~gv~i~~VgvG~~~~~~L~~ia 155 (224)
T cd01475 123 DVSEVAAKAR---ALGIEMFAVGVGRADEEELREIA 155 (224)
T ss_pred cHHHHHHHHH---HCCcEEEEEeCCcCCHHHHHHHh
Confidence 2344444443 45688999999997766666553
No 50
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=97.73 E-value=1.2e-05 Score=56.32 Aligned_cols=38 Identities=39% Similarity=1.065 Sum_probs=30.5
Q ss_pred cccccccCCcc-cee-CCCCccchhhhhcC-----CCCCcccccc
Q 013848 391 VCPICLTDPKD-MAF-GCGHQTCCGCGQDL-----DLCPICRSFI 428 (435)
Q Consensus 391 ~CpICl~~~~d-v~~-~CGH~fC~~C~~~l-----~~CPiCR~~i 428 (435)
.|+||++...+ +.+ +|||.||..|+..+ ..||+||..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 59999999855 445 69999999999743 4799999753
No 51
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=97.69 E-value=8.2e-06 Score=57.81 Aligned_cols=33 Identities=42% Similarity=1.100 Sum_probs=27.9
Q ss_pred ccccccCCcc-c-eeCCCCccchhhhhcC------CCCCcc
Q 013848 392 CPICLTDPKD-M-AFGCGHQTCCGCGQDL------DLCPIC 424 (435)
Q Consensus 392 CpICl~~~~d-v-~~~CGH~fC~~C~~~l------~~CPiC 424 (435)
|+||++.+.+ + +++|||.||..|+.++ ..||+|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 8999999998 4 4599999999999754 369987
No 52
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=97.68 E-value=0.00082 Score=61.85 Aligned_cols=145 Identities=17% Similarity=0.253 Sum_probs=90.6
Q ss_pred eEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhccc-ccCCCCccceeeeCCCCCCCCcccccCCCCCcc
Q 013848 96 LIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLS-SFDEDNLIPCFGFGDASTHDQEVFSFYPDEKFC 174 (435)
Q Consensus 96 livaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~-~yD~D~~ip~fGFGa~~~~~~~vF~~~~~~~~~ 174 (435)
+++.||.|+|+.. .+..+.|...+..++. .+..+..+-++.|.+...+ .++.+ .
T Consensus 3 v~lvlD~SgSM~~-----------------~~rl~~ak~a~~~~~~~~~~~~d~v~lv~F~~~~~~--~~~~~------t 57 (178)
T cd01451 3 VIFVVDASGSMAA-----------------RHRMAAAKGAVLSLLRDAYQRRDKVALIAFRGTEAE--VLLPP------T 57 (178)
T ss_pred EEEEEECCccCCC-----------------ccHHHHHHHHHHHHHHHhhcCCCEEEEEEECCCCce--EEeCC------C
Confidence 6789999999951 1356677777666664 3455668999999764211 12222 1
Q ss_pred CCHHHHHHHHHHhcCcccccCCCChHHHHHHHHHHHH-hc--CCceEEEEEEeCCcccccCCcccCccchhHHHHHHHHH
Q 013848 175 NGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVE-HS--GGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIV 251 (435)
Q Consensus 175 ~G~~gvl~~Yr~~~~~v~l~GPT~fapII~~a~~~~~-~~--~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~T~~aIv 251 (435)
.+.+.+.+ .+..+...|-|++..-++.+.+.++ +. .+.-.++++||||..+...| +......+++.
T Consensus 58 ~~~~~~~~----~l~~l~~~G~T~l~~aL~~a~~~l~~~~~~~~~~~~ivliTDG~~~~g~~-------~~~~~~~~~~~ 126 (178)
T cd01451 58 RSVELAKR----RLARLPTGGGTPLAAGLLAAYELAAEQARDPGQRPLIVVITDGRANVGPD-------PTADRALAAAR 126 (178)
T ss_pred CCHHHHHH----HHHhCCCCCCCcHHHHHHHHHHHHHHHhcCCCCceEEEEECCCCCCCCCC-------chhHHHHHHHH
Confidence 23444433 3445667899999999999998872 21 12237889999998763111 11112245555
Q ss_pred HhcCCCeEEEEEecCCCCC--Cccccc
Q 013848 252 KASEYPLSIILVGVGDGPW--DMMREF 276 (435)
Q Consensus 252 ~AS~~PLSIIiVGVGd~~f--~~m~~l 276 (435)
++....+.|+.||+|..+. +.|++|
T Consensus 127 ~l~~~gi~v~~I~~~~~~~~~~~l~~i 153 (178)
T cd01451 127 KLRARGISALVIDTEGRPVRRGLAKDL 153 (178)
T ss_pred HHHhcCCcEEEEeCCCCccCccHHHHH
Confidence 5567788889999987543 345544
No 53
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=1.4e-05 Score=78.67 Aligned_cols=43 Identities=30% Similarity=0.770 Sum_probs=36.4
Q ss_pred CCCCcccccccCCcc-ceeCCCCccchhhhhc-C-----CCCCccccccc
Q 013848 387 SDNHVCPICLTDPKD-MAFGCGHQTCCGCGQD-L-----DLCPICRSFIQ 429 (435)
Q Consensus 387 ~e~~~CpICl~~~~d-v~~~CGH~fC~~C~~~-l-----~~CPiCR~~i~ 429 (435)
..+..|.||++...+ +..+|||.||+.|+.. | ..||+||+...
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~ 262 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVY 262 (271)
T ss_pred ccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhcc
Confidence 456899999999988 5679999999999976 4 26999999764
No 54
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=1.2e-05 Score=88.47 Aligned_cols=44 Identities=32% Similarity=0.662 Sum_probs=37.7
Q ss_pred CCCCcccccccCCcccee-CCCCccchhhhhc-----CCCCCcccccccc
Q 013848 387 SDNHVCPICLTDPKDMAF-GCGHQTCCGCGQD-----LDLCPICRSFIQT 430 (435)
Q Consensus 387 ~e~~~CpICl~~~~dv~~-~CGH~fC~~C~~~-----l~~CPiCR~~i~~ 430 (435)
.+-+.|++|-++++++++ .|||.||..|++. .+.||.|-..|..
T Consensus 641 K~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFga 690 (698)
T KOG0978|consen 641 KELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGA 690 (698)
T ss_pred HhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 345899999999999665 9999999999974 4699999999853
No 55
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=97.64 E-value=0.00066 Score=64.27 Aligned_cols=139 Identities=11% Similarity=0.138 Sum_probs=96.8
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCC---------CCccceeeeCCCCCCCCcc
Q 013848 94 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDE---------DNLIPCFGFGDASTHDQEV 164 (435)
Q Consensus 94 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~yD~---------D~~ip~fGFGa~~~~~~~v 164 (435)
+.++++||-|.|.+ .+.++++..-|..++..++. .-++-+.-|+.... -.
T Consensus 20 ~DivfvlD~S~Sm~------------------~~~f~~~k~fi~~~~~~~~~~~~~~~~~~~~rVGlV~fs~~a~---~~ 78 (193)
T cd01477 20 LDIVFVVDNSKGMT------------------QGGLWQVRATISSLFGSSSQIGTDYDDPRSTRVGLVTYNSNAT---VV 78 (193)
T ss_pred eeEEEEEeCCCCcc------------------hhhHHHHHHHHHHHHhhccccccccCCCCCcEEEEEEccCceE---EE
Confidence 46999999999985 24588888888888877775 24788888877532 23
Q ss_pred cccCCCCCccCCHHHHHHHHHHhcCcccccCCCChHHHHHHHHHHHHhc-----CCceEEEEEEeCCcccccCCcccCcc
Q 013848 165 FSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHS-----GGQYHVLVIIADGQVTRSVDTEHGQL 239 (435)
Q Consensus 165 F~~~~~~~~~~G~~gvl~~Yr~~~~~v~l~GPT~fapII~~a~~~~~~~-----~~~Y~VLlIiTDG~i~d~~d~~~~~~ 239 (435)
|+|+ .....++++++.+..+..+...|-|+...-|++|.+..... .+.-.|+|+||||.-....
T Consensus 79 ~~L~----d~~~~~~~~~ai~~~~~~~~~~ggT~ig~aL~~A~~~l~~~~~~~R~~v~kvvIllTDg~~~~~~------- 147 (193)
T cd01477 79 ADLN----DLQSFDDLYSQIQGSLTDVSSTNASYLDTGLQAAEQMLAAGKRTSRENYKKVVIVFASDYNDEGS------- 147 (193)
T ss_pred Eecc----cccCHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHHhhhccccCCCCeEEEEEecCccCCCC-------
Confidence 5553 13467788888777666666667799999999998887643 1235789999998543210
Q ss_pred chhHHHHHHHHHHhcCCCeEEEEEecCCC
Q 013848 240 SSQEKKTVEAIVKASEYPLSIILVGVGDG 268 (435)
Q Consensus 240 ~~~~~~T~~aIv~AS~~PLSIIiVGVGd~ 268 (435)
.+. .++..++.+..+-|.-||||.+
T Consensus 148 -~~~---~~~a~~l~~~GI~i~tVGiG~~ 172 (193)
T cd01477 148 -NDP---RPIAARLKSTGIAIITVAFTQD 172 (193)
T ss_pred -CCH---HHHHHHHHHCCCEEEEEEeCCC
Confidence 012 2333344567999999999984
No 56
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=97.63 E-value=0.00065 Score=63.52 Aligned_cols=139 Identities=14% Similarity=0.195 Sum_probs=89.6
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCC---CCccceeeeCCCCCCCCcccccCCC
Q 013848 94 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDE---DNLIPCFGFGDASTHDQEVFSFYPD 170 (435)
Q Consensus 94 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~yD~---D~~ip~fGFGa~~~~~~~vF~~~~~ 170 (435)
.+++|+||.|.|+.-. +-.+|-.+.|-..+...+..+.+ ...+-++.|++...+. +.+++.
T Consensus 4 r~ivi~lD~S~SM~a~-------------D~~ptRl~~ak~~~~~fi~~~~~~~~~~~vglv~f~~~~a~~--~~PlT~- 67 (183)
T cd01453 4 RHLIIVIDCSRSMEEQ-------------DLKPSRLAVVLKLLELFIEEFFDQNPISQLGIISIKNGRAEK--LTDLTG- 67 (183)
T ss_pred eEEEEEEECcHHHhcC-------------CCCchHHHHHHHHHHHHHHHHhhcCccccEEEEEEcCCccEE--EECCCC-
Confidence 4799999999998632 11379999999999999988743 3578888996543321 223322
Q ss_pred CCccCCHHHHHHHHHHhcCcccccCCCChHHHHHHHHHHHHhcCC--ceEEEEEEeCCcccccCCcccCccchhHHHHHH
Q 013848 171 EKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSGG--QYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVE 248 (435)
Q Consensus 171 ~~~~~G~~gvl~~Yr~~~~~v~l~GPT~fapII~~a~~~~~~~~~--~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~T~~ 248 (435)
..+.++..-+.. +...|-|++...|+.|.+..+.... .=.|+||++||.-.+ ..+..+
T Consensus 68 -----D~~~~~~~L~~~---~~~~G~t~l~~aL~~A~~~l~~~~~~~~~~iiil~sd~~~~~------------~~~~~~ 127 (183)
T cd01453 68 -----NPRKHIQALKTA---RECSGEPSLQNGLEMALESLKHMPSHGSREVLIIFSSLSTCD------------PGNIYE 127 (183)
T ss_pred -----CHHHHHHHhhcc---cCCCCchhHHHHHHHHHHHHhcCCccCceEEEEEEcCCCcCC------------hhhHHH
Confidence 223333333222 2445779999999999988865322 224888899987554 111223
Q ss_pred HHHHhcCCCeEEEEEecCCC
Q 013848 249 AIVKASEYPLSIILVGVGDG 268 (435)
Q Consensus 249 aIv~AS~~PLSIIiVGVGd~ 268 (435)
++..+.+..+-|-+||||.+
T Consensus 128 ~~~~l~~~~I~v~~IgiG~~ 147 (183)
T cd01453 128 TIDKLKKENIRVSVIGLSAE 147 (183)
T ss_pred HHHHHHHcCcEEEEEEechH
Confidence 34445555788888999853
No 57
>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta sub-unit. Each sub-unit has a large extracellular portion, a single transmembrane segment and a short cytoplasmic domain. The N-terminal domains of the alpha and beta subunits associate to form the integrin headpiece, which contains the ligand binding site, whereas the C-terminal segments traverse the plasma membrane and mediate interaction with the cytoskeleton and with signalling proteins.The VWA domains present in the alpha subunits of integrins seem to be a chordate specific radiation of the gene family being found only in vertebrates. They mediate protein-protein interactions.
Probab=97.57 E-value=0.00077 Score=62.16 Aligned_cols=135 Identities=19% Similarity=0.286 Sum_probs=92.8
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCC---CCccceeeeCCCCCCCCcccccCCC
Q 013848 94 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDE---DNLIPCFGFGDASTHDQEVFSFYPD 170 (435)
Q Consensus 94 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~yD~---D~~ip~fGFGa~~~~~~~vF~~~~~ 170 (435)
+.+++.||-|.|.+ ...+++++..+..++..|+. .-.+-+..|+.... ..|+|..
T Consensus 1 ~Di~fvlD~S~S~~------------------~~~f~~~k~fi~~~i~~l~~~~~~~rvgvv~fs~~~~---~~~~l~~- 58 (177)
T cd01469 1 MDIVFVLDGSGSIY------------------PDDFQKVKNFLSTVMKKLDIGPTKTQFGLVQYSESFR---TEFTLNE- 58 (177)
T ss_pred CcEEEEEeCCCCCC------------------HHHHHHHHHHHHHHHHHcCcCCCCcEEEEEEECCcee---EEEecCc-
Confidence 36899999998874 35688888888888888886 35888999988642 2355532
Q ss_pred CCccCCHHHHHHHHHHhcCcccccCCCChHHHHHHHHHHH--HhcC---CceEEEEEEeCCcccccCCcccCccchhHHH
Q 013848 171 EKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIV--EHSG---GQYHVLVIIADGQVTRSVDTEHGQLSSQEKK 245 (435)
Q Consensus 171 ~~~~~G~~gvl~~Yr~~~~~v~l~GPT~fapII~~a~~~~--~~~~---~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~ 245 (435)
-...+.++++=+. ++ .+.|.|+....|+.|.+.+ ...+ +.-.|+|+||||.-++.. .
T Consensus 59 ---~~~~~~~~~~i~~-~~--~~~g~T~~~~AL~~a~~~l~~~~~g~R~~~~kv~illTDG~~~~~~------------~ 120 (177)
T cd01469 59 ---YRTKEEPLSLVKH-IS--QLLGLTNTATAIQYVVTELFSESNGARKDATKVLVVITDGESHDDP------------L 120 (177)
T ss_pred ---cCCHHHHHHHHHh-Cc--cCCCCccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEeCCCCCCcc------------c
Confidence 1234555554332 22 2567899999999998875 2221 245789999999988622 1
Q ss_pred HHHHHHHhcCCCeEEEEEecCCC
Q 013848 246 TVEAIVKASEYPLSIILVGVGDG 268 (435)
Q Consensus 246 T~~aIv~AS~~PLSIIiVGVGd~ 268 (435)
+.+++..|-..-+-|.-||||+.
T Consensus 121 ~~~~~~~~k~~gv~v~~Vgvg~~ 143 (177)
T cd01469 121 LKDVIPQAEREGIIRYAIGVGGH 143 (177)
T ss_pred cHHHHHHHHHCCcEEEEEEeccc
Confidence 23344455567889999999984
No 58
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=97.57 E-value=0.001 Score=66.33 Aligned_cols=138 Identities=18% Similarity=0.334 Sum_probs=91.6
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCCCCccceeeeCCCCCCCCcccccCCCCCc
Q 013848 94 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKF 173 (435)
Q Consensus 94 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~yD~D~~ip~fGFGa~~~~~~~vF~~~~~~~~ 173 (435)
.++++|||-|+|+...+ + .+|..| |+..|.+.|..-.. +.+-+.+||.... .+.+|+.+
T Consensus 61 ~qIvlaID~S~SM~~~~-------~------~~~ale-ak~lIs~al~~Le~-g~vgVv~Fg~~~~---~v~Plt~d--- 119 (266)
T cd01460 61 YQILIAIDDSKSMSENN-------S------KKLALE-SLCLVSKALTLLEV-GQLGVCSFGEDVQ---ILHPFDEQ--- 119 (266)
T ss_pred ceEEEEEecchhccccc-------c------cccHHH-HHHHHHHHHHhCcC-CcEEEEEeCCCce---EeCCCCCC---
Confidence 57999999999996421 1 356766 88888888887775 6899999998632 22333221
Q ss_pred cCCHHHHHHHHHHhcCccccc-CCCChHHHHHHHHHHHHhcC-----C-ceEEEEEEeCCcccccCCcccCccchhHHHH
Q 013848 174 CNGFEEVLRRYRELVPHLRLA-GPTSFAPIIEMAITIVEHSG-----G-QYHVLVIIADGQVTRSVDTEHGQLSSQEKKT 246 (435)
Q Consensus 174 ~~G~~gvl~~Yr~~~~~v~l~-GPT~fapII~~a~~~~~~~~-----~-~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~T 246 (435)
+.. ++.-+++....+. +-|+.+..|+.+++..++.. + .-.++|||+||...+ ++...
T Consensus 120 ---~~~--~a~~~~l~~~~f~~~~Tni~~aL~~a~~~f~~~~~~~~s~~~~qlilLISDG~~~~-----------~e~~~ 183 (266)
T cd01460 120 ---FSS--QSGPRILNQFTFQQDKTDIANLLKFTAQIFEDARTQSSSGSLWQLLLIISDGRGEF-----------SEGAQ 183 (266)
T ss_pred ---chh--hHHHHHhCcccCCCCCCcHHHHHHHHHHHHHhhhccccccccccEEEEEECCCccc-----------CccHH
Confidence 111 1222233322222 34999999999999876441 1 137999999999433 12333
Q ss_pred HHHHHHhcCCCeEEEEEecCCC
Q 013848 247 VEAIVKASEYPLSIILVGVGDG 268 (435)
Q Consensus 247 ~~aIv~AS~~PLSIIiVGVGd~ 268 (435)
..++.+|.+..+.+++|||=+.
T Consensus 184 ~~~~r~a~e~~i~l~~I~ld~~ 205 (266)
T cd01460 184 KVRLREAREQNVFVVFIIIDNP 205 (266)
T ss_pred HHHHHHHHHcCCeEEEEEEcCC
Confidence 4457788888999999999664
No 59
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=97.52 E-value=2e-05 Score=57.62 Aligned_cols=26 Identities=46% Similarity=0.986 Sum_probs=16.6
Q ss_pred ccccccCCcc-----ceeCCCCccchhhhhcC
Q 013848 392 CPICLTDPKD-----MAFGCGHQTCCGCGQDL 418 (435)
Q Consensus 392 CpICl~~~~d-----v~~~CGH~fC~~C~~~l 418 (435)
|+||.+ +.+ ++++|||.||.+|++++
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l 31 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKL 31 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHH
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHH
Confidence 899999 544 66799999999999865
No 60
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.50 E-value=1.5e-05 Score=80.58 Aligned_cols=48 Identities=25% Similarity=0.515 Sum_probs=39.8
Q ss_pred CCCCCCCCcccccccCCcc-ceeCCCCccchhhhhcC----CCCCcccccccc
Q 013848 383 ASSTSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL----DLCPICRSFIQT 430 (435)
Q Consensus 383 ~~~l~e~~~CpICl~~~~d-v~~~CGH~fC~~C~~~l----~~CPiCR~~i~~ 430 (435)
.-.+.+-+.|-||.+.++. +..+|+|.||.-|+... ..||.|+.+++.
T Consensus 17 lk~lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~E 69 (442)
T KOG0287|consen 17 LKTLDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTE 69 (442)
T ss_pred hhhhHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhccCCCCCceecccch
Confidence 3345667899999999999 55599999999999865 489999988764
No 61
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=5.3e-06 Score=84.29 Aligned_cols=50 Identities=30% Similarity=0.634 Sum_probs=40.7
Q ss_pred CCCCCCCCcccccccCCcc-cee-CCCCccchhhhhcC-----CCCCcccccccccc
Q 013848 383 ASSTSDNHVCPICLTDPKD-MAF-GCGHQTCCGCGQDL-----DLCPICRSFIQTRI 432 (435)
Q Consensus 383 ~~~l~e~~~CpICl~~~~d-v~~-~CGH~fC~~C~~~l-----~~CPiCR~~i~~~i 432 (435)
...+..+..|+|||++.+. ++. .|+|.||.+|+... ..||.||+....+.
T Consensus 37 l~~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Skr 93 (381)
T KOG0311|consen 37 LAMFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKR 93 (381)
T ss_pred HHHhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccc
Confidence 3456678999999999988 554 99999999999743 48999999886653
No 62
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=97.47 E-value=7.9e-05 Score=50.21 Aligned_cols=33 Identities=48% Similarity=1.254 Sum_probs=27.4
Q ss_pred ccccccCCcc-ceeCCCCccchhhhhcC-----CCCCcc
Q 013848 392 CPICLTDPKD-MAFGCGHQTCCGCGQDL-----DLCPIC 424 (435)
Q Consensus 392 CpICl~~~~d-v~~~CGH~fC~~C~~~l-----~~CPiC 424 (435)
|+||++...+ +.++|||.||..|+..+ ..||+|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 8899999777 45699999999999754 469887
No 63
>PRK13685 hypothetical protein; Provisional
Probab=97.46 E-value=0.0021 Score=65.30 Aligned_cols=143 Identities=17% Similarity=0.168 Sum_probs=93.2
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCCCCccceeeeCCCCCCCCcccccCCCCCc
Q 013848 94 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKF 173 (435)
Q Consensus 94 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~yD~D~~ip~fGFGa~~~~~~~vF~~~~~~~~ 173 (435)
.+++++||-|+|+..++ ..+|-.+.|-..+..+++.+.++..+-++.|++...- +.++.
T Consensus 89 ~~vvlvlD~S~SM~~~D-------------~~p~RL~~ak~~~~~~l~~l~~~d~vglv~Fa~~a~~---~~p~t----- 147 (326)
T PRK13685 89 AVVMLVIDVSQSMRATD-------------VEPNRLAAAQEAAKQFADELTPGINLGLIAFAGTATV---LVSPT----- 147 (326)
T ss_pred ceEEEEEECCccccCCC-------------CCCCHHHHHHHHHHHHHHhCCCCCeEEEEEEcCceee---cCCCC-----
Confidence 46999999999996321 1358899999999999999877778999999986431 12222
Q ss_pred cCCHHHHHHHHHHhcCcccccCCCChHHHHHHHHHHHHh--------cCCceEEEEEEeCCcccccCCcccCccchhHHH
Q 013848 174 CNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEH--------SGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKK 245 (435)
Q Consensus 174 ~~G~~gvl~~Yr~~~~~v~l~GPT~fapII~~a~~~~~~--------~~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~ 245 (435)
.+.+.+. ..+..+...|-|+...-|..|.+.+++ ++...-++|+||||.-+...+ ..+...
T Consensus 148 -~d~~~l~----~~l~~l~~~~~T~~g~al~~A~~~l~~~~~~~~~~~~~~~~~IILlTDG~~~~~~~------~~~~~~ 216 (326)
T PRK13685 148 -TNREATK----NAIDKLQLADRTATGEAIFTALQAIATVGAVIGGGDTPPPARIVLMSDGKETVPTN------PDNPRG 216 (326)
T ss_pred -CCHHHHH----HHHHhCCCCCCcchHHHHHHHHHHHHhhhcccccccCCCCCEEEEEcCCCCCCCCC------CCCccc
Confidence 2333332 234455566778888888888877653 111235678999998653110 000111
Q ss_pred HHHHHHHhcCCCeEEEEEecCCC
Q 013848 246 TVEAIVKASEYPLSIILVGVGDG 268 (435)
Q Consensus 246 T~~aIv~AS~~PLSIIiVGVGd~ 268 (435)
..++...|.+..+.|-.||||..
T Consensus 217 ~~~aa~~a~~~gi~i~~Ig~G~~ 239 (326)
T PRK13685 217 AYTAARTAKDQGVPISTISFGTP 239 (326)
T ss_pred HHHHHHHHHHcCCeEEEEEECCC
Confidence 23455566677888888899863
No 64
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=97.43 E-value=0.00061 Score=60.35 Aligned_cols=121 Identities=20% Similarity=0.311 Sum_probs=80.0
Q ss_pred eEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCCCCccceeeeCCCCCCCCcccccCCCCCccC
Q 013848 96 LIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKFCN 175 (435)
Q Consensus 96 livaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~yD~D~~ip~fGFGa~~~~~~~vF~~~~~~~~~~ 175 (435)
+.||||-|+|.. .....+++..|..+++.+ ...+-++=|-++......+ .
T Consensus 1 i~vaiDtSGSis------------------~~~l~~fl~ev~~i~~~~--~~~v~vi~~D~~v~~~~~~----------~ 50 (126)
T PF09967_consen 1 IVVAIDTSGSIS------------------DEELRRFLSEVAGILRRF--PAEVHVIQFDAEVQDVQVF----------R 50 (126)
T ss_pred CEEEEECCCCCC------------------HHHHHHHHHHHHHHHHhC--CCCEEEEEECCEeeeeeEE----------e
Confidence 579999999984 357888999999999999 3448888787765433222 1
Q ss_pred CHHHHHHHHHHhcCccc--ccCCCChHHHHHHHHHHHHhcCCceEEEEEEeCCcccccCCcccCccchhHHHHHHHHHHh
Q 013848 176 GFEEVLRRYRELVPHLR--LAGPTSFAPIIEMAITIVEHSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKA 253 (435)
Q Consensus 176 G~~gvl~~Yr~~~~~v~--l~GPT~fapII~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~T~~aIv~A 253 (435)
..+ ..+..++ =.|-|+|.|+++.+.+. .....++|+||||..... ..+
T Consensus 51 ~~~-------~~~~~~~~~GgGGTdf~pvf~~~~~~----~~~~~~vi~fTDg~~~~~-------------------~~~ 100 (126)
T PF09967_consen 51 SLE-------DELRDIKLKGGGGTDFRPVFEYLEEN----RPRPSVVIYFTDGEGWPP-------------------EEA 100 (126)
T ss_pred ccc-------ccccccccCCCCCCcchHHHHHHHhc----CCCCCEEEEEeCCCCCCC-------------------CCC
Confidence 101 1112222 24679999999998654 345678889999988531 112
Q ss_pred cCCCeEEEEEe--cCCCCCCccccc
Q 013848 254 SEYPLSIILVG--VGDGPWDMMREF 276 (435)
Q Consensus 254 S~~PLSIIiVG--VGd~~f~~m~~l 276 (435)
=.+|+=|++.| -...||+..-.|
T Consensus 101 P~~~vlWvl~~~~~~~~P~G~vv~l 125 (126)
T PF09967_consen 101 PPYPVLWVLPGNRNPKAPFGRVVRL 125 (126)
T ss_pred CCCcEEEEEeCCCCCCCCCEEEEEe
Confidence 37899999999 233456554433
No 65
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=97.36 E-value=0.0018 Score=61.63 Aligned_cols=156 Identities=14% Similarity=0.154 Sum_probs=90.3
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCCCCccceeeeCCCCCCCCcccccCCCCCcc
Q 013848 95 NLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKFC 174 (435)
Q Consensus 95 nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~yD~D~~ip~fGFGa~~~~~~~vF~~~~~~~~~ 174 (435)
+++++||.|+|+.. |+ . .+...-.--.|...+.+.+..|.+.......||++.......+ ..+.|.-
T Consensus 2 ~l~lavDlSgSM~~-----~~--~---~dg~~~~RL~a~k~v~~~f~~f~~~r~~DriG~~g~~~~~~~l---t~d~p~t 68 (191)
T cd01455 2 RLKLVVDVSGSMYR-----FN--G---YDGRLDRSLEAVVMVMEAFDGFEDKIQYDIIGHSGDGPCVPFV---KTNHPPK 68 (191)
T ss_pred ceEEEEECcHhHHH-----Hh--c---cCCccccHHHHHHHHHHHHHHHHHhCccceeeecCcccccCcc---ccccCcc
Confidence 68999999999962 21 0 2222333444555555556666677778888887643221111 1233333
Q ss_pred CCHH--HHHHHHHHhcCcccccCCCChHHHHHHHHHHHH-hcCCceEEEEEEeCCcccccCCcccCccchhHHHHHHHHH
Q 013848 175 NGFE--EVLRRYRELVPHLRLAGPTSFAPIIEMAITIVE-HSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIV 251 (435)
Q Consensus 175 ~G~~--gvl~~Yr~~~~~v~l~GPT~fapII~~a~~~~~-~~~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~T~~aIv 251 (435)
..-+ ++|...-.- -++-++|+..= .-|..+++..+ ++..+=.|+++||||.-+. |.++|... |-.
T Consensus 69 ~d~~~~~~l~~~l~~-~q~g~ag~~Ta-dAi~~av~rl~~~~~a~~kvvILLTDG~n~~------~~i~P~~a----Aa~ 136 (191)
T cd01455 69 NNKERLETLKMMHAH-SQFCWSGDHTV-EATEFAIKELAAKEDFDEAIVIVLSDANLER------YGIQPKKL----ADA 136 (191)
T ss_pred cchhHHHHHHHHHHh-cccCccCccHH-HHHHHHHHHHHhcCcCCCcEEEEEeCCCcCC------CCCChHHH----HHH
Confidence 3333 344433222 24456776433 88888888887 6654556889999999764 44555211 123
Q ss_pred HhcCCCeEEEEEecCCCCCCcccc
Q 013848 252 KASEYPLSIILVGVGDGPWDMMRE 275 (435)
Q Consensus 252 ~AS~~PLSIIiVGVGd~~f~~m~~ 275 (435)
-|.+.-+=|-.||||..+.+.++.
T Consensus 137 lA~~~gV~iytIgiG~~d~~~l~~ 160 (191)
T cd01455 137 LAREPNVNAFVIFIGSLSDEADQL 160 (191)
T ss_pred HHHhCCCEEEEEEecCCCHHHHHH
Confidence 355667777788888755444443
No 66
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.35 E-value=5.9e-05 Score=77.83 Aligned_cols=41 Identities=37% Similarity=0.912 Sum_probs=37.1
Q ss_pred CcccccccCCcccee-CCCCccchhhhhcCC------CCCcccccccc
Q 013848 390 HVCPICLTDPKDMAF-GCGHQTCCGCGQDLD------LCPICRSFIQT 430 (435)
Q Consensus 390 ~~CpICl~~~~dv~~-~CGH~fC~~C~~~l~------~CPiCR~~i~~ 430 (435)
.+|.||-++.+|+-+ +|||..|..|+..|. .||.||-.|..
T Consensus 370 eLCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKG 417 (563)
T KOG1785|consen 370 ELCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKG 417 (563)
T ss_pred HHHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecc
Confidence 589999999999888 999999999998773 79999999865
No 67
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.32 E-value=5.7e-05 Score=59.68 Aligned_cols=43 Identities=30% Similarity=0.763 Sum_probs=24.8
Q ss_pred CCCCcccccccCCcc-cee-CCCCccchhhhhcC--CCCCccccccc
Q 013848 387 SDNHVCPICLTDPKD-MAF-GCGHQTCCGCGQDL--DLCPICRSFIQ 429 (435)
Q Consensus 387 ~e~~~CpICl~~~~d-v~~-~CGH~fC~~C~~~l--~~CPiCR~~i~ 429 (435)
++-+.|++|.+..+. +.+ .|.|.||..|+.+. ..||.|+.+-.
T Consensus 5 e~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~~CPvC~~Paw 51 (65)
T PF14835_consen 5 EELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGSECPVCHTPAW 51 (65)
T ss_dssp HHTTS-SSS-S--SS-B---SSS--B-TTTGGGGTTTB-SSS--B-S
T ss_pred HHhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCCCCCCcCChHH
Confidence 455789999999999 444 99999999999875 47999998863
No 68
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=97.30 E-value=0.0032 Score=57.87 Aligned_cols=141 Identities=16% Similarity=0.263 Sum_probs=92.9
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccC---CCCccceeeeCCCCCCCCcccccCCCC
Q 013848 95 NLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFD---EDNLIPCFGFGDASTHDQEVFSFYPDE 171 (435)
Q Consensus 95 nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~yD---~D~~ip~fGFGa~~~~~~~vF~~~~~~ 171 (435)
.+++.||-|.|.+ ...++++..-|.+++..|+ +.-.+.+.-|+.... ..|.|+.-
T Consensus 2 DivfllD~S~Si~------------------~~~f~~~k~fi~~lv~~f~i~~~~~rVgvv~ys~~~~---~~~~l~~~- 59 (165)
T cd01481 2 DIVFLIDGSDNVG------------------SGNFPAIRDFIERIVQSLDVGPDKIRVAVVQFSDTPR---PEFYLNTH- 59 (165)
T ss_pred CEEEEEeCCCCcC------------------HHHHHHHHHHHHHHHhhccCCCCCcEEEEEEecCCee---EEEecccc-
Confidence 5789999998874 3677888888888888887 345788888887542 24666421
Q ss_pred CccCCHHHHHHHHHHhcCcccc-cC-CCChHHHHHHHHHHHHh--c-----CCceEEEEEEeCCcccccCCcccCccchh
Q 013848 172 KFCNGFEEVLRRYRELVPHLRL-AG-PTSFAPIIEMAITIVEH--S-----GGQYHVLVIIADGQVTRSVDTEHGQLSSQ 242 (435)
Q Consensus 172 ~~~~G~~gvl~~Yr~~~~~v~l-~G-PT~fapII~~a~~~~~~--~-----~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~ 242 (435)
...++++++-.+ ++. .| .|+-...|+.+.+.+-. . .+--.|||+||||.-.| +
T Consensus 60 ---~~~~~l~~~i~~----i~~~~g~~t~t~~AL~~~~~~~f~~~~g~R~~~~~~kv~vviTdG~s~d-----------~ 121 (165)
T cd01481 60 ---STKADVLGAVRR----LRLRGGSQLNTGSALDYVVKNLFTKSAGSRIEEGVPQFLVLITGGKSQD-----------D 121 (165)
T ss_pred ---CCHHHHHHHHHh----cccCCCCcccHHHHHHHHHHhhcCccccCCccCCCCeEEEEEeCCCCcc-----------h
Confidence 245667665443 332 45 47888888888765421 1 12357999999999765 2
Q ss_pred HHHHHHHHHHhcCCCeEEEEEecCCCCCCcccccCC
Q 013848 243 EKKTVEAIVKASEYPLSIILVGVGDGPWDMMREFDD 278 (435)
Q Consensus 243 ~~~T~~aIv~AS~~PLSIIiVGVGd~~f~~m~~lDd 278 (435)
..+..+.+.+ .-+-|+.||+|..+.+.|+.+-+
T Consensus 122 ~~~~a~~lr~---~gv~i~~vG~~~~~~~eL~~ias 154 (165)
T cd01481 122 VERPAVALKR---AGIVPFAIGARNADLAELQQIAF 154 (165)
T ss_pred HHHHHHHHHH---CCcEEEEEeCCcCCHHHHHHHhC
Confidence 3444445554 45778888888666655555543
No 69
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heterodimer (composed of Ku70 and Ku80) contributes to genomic integrity through its ability to bind DNA double-strand breaks (DSB) in a preferred orientation. DSB's are repaired by either homologues recombination or non-homologues end joining and facilitate repair by the non-homologous end-joining pathway (NHEJ). The Ku heterodimer is required for accurate process that tends to preserve the sequence at the junction. Ku78 is found in all three kingdoms of life. However, only the eukaryotic proteins have a vWA domain fused to them at their N-termini. The vWA domain is not involved in DNA binding but may very likey mediate Ku78's interactions with other proteins. Members of this subgroup lack the conserved MIDAS motif.
Probab=97.23 E-value=0.0097 Score=56.66 Aligned_cols=155 Identities=12% Similarity=0.216 Sum_probs=98.1
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccc---cCCCCccceeeeCCCCCC----CCccccc
Q 013848 95 NLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSS---FDEDNLIPCFGFGDASTH----DQEVFSF 167 (435)
Q Consensus 95 nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~---yD~D~~ip~fGFGa~~~~----~~~vF~~ 167 (435)
.++++||.|.|+... -+ +..++..+.|+..|..+++. ......+-++.||...+. ..+|+.+
T Consensus 3 ~ivf~iDvS~SM~~~----~~-------~~~~s~l~~a~~~i~~~~~~ki~~~~~D~vGlilf~t~~~~~~~~~~~i~v~ 71 (218)
T cd01458 3 SVVFLVDVSPSMFES----KD-------GEYESPFEEALKCIRQLMKSKIISSPKDLVGVVFYGTEESKNPVGYENIYVL 71 (218)
T ss_pred EEEEEEeCCHHHcCC----CC-------CCCCChHHHHHHHHHHHHHhceeCCCCCeEEEEEEcccCCCCcCCCCceEEe
Confidence 479999999999621 00 11368999999999999997 667779999999987543 2344444
Q ss_pred CCCCCccCCHHHHHHHHHHhcCccc--------ccCCCChHHHHHHHHHHHHhcC--CceEEEEEEeCCcccccCCcccC
Q 013848 168 YPDEKFCNGFEEVLRRYRELVPHLR--------LAGPTSFAPIIEMAITIVEHSG--GQYHVLVIIADGQVTRSVDTEHG 237 (435)
Q Consensus 168 ~~~~~~~~G~~gvl~~Yr~~~~~v~--------l~GPT~fapII~~a~~~~~~~~--~~Y~VLlIiTDG~i~d~~d~~~~ 237 (435)
.|-+ .... +.++.+.+.+.... -.+.|.+..+|..|.++..+.. ..=-.+++||||.-.- +
T Consensus 72 ~~l~--~~~~-~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~aL~~a~~~~~~~~~~~~~k~IvL~TDg~~p~------~ 142 (218)
T cd01458 72 LDLD--TPGA-ERVEDLKELIEPGGLSFAGQVGDSGQVSLSDALWVCLDLFSKGKKKKSHKRIFLFTNNDDPH------G 142 (218)
T ss_pred ecCC--CCCH-HHHHHHHHHhhcchhhhcccCCCCCCccHHHHHHHHHHHHHhccccccccEEEEECCCCCCC------C
Confidence 3311 1122 33344444332221 2457899999999998876521 1124678999986320 0
Q ss_pred ccchhHHHHHHHHHHhcCCCeEEEEEecCCCC
Q 013848 238 QLSSQEKKTVEAIVKASEYPLSIILVGVGDGP 269 (435)
Q Consensus 238 ~~~~~~~~T~~aIv~AS~~PLSIIiVGVGd~~ 269 (435)
.=....++....+.+..+.-+.|.+||||..+
T Consensus 143 ~~~~~~~~~~~~a~~l~~~gI~i~~i~i~~~~ 174 (218)
T cd01458 143 GDSIKDSQAAVKAEDLKDKGIELELFPLSSPG 174 (218)
T ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEEecCCCC
Confidence 00011344455666677778999999998754
No 70
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.22 E-value=8.7e-05 Score=73.96 Aligned_cols=45 Identities=27% Similarity=0.524 Sum_probs=37.6
Q ss_pred CCCCCCcccccccCCcc-ceeCCCCccchhhhhcC----CCCCccccccc
Q 013848 385 STSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL----DLCPICRSFIQ 429 (435)
Q Consensus 385 ~l~e~~~CpICl~~~~d-v~~~CGH~fC~~C~~~l----~~CPiCR~~i~ 429 (435)
.+...+.|-||-+.++. +..+|||.||.-|+.+. ..||.||.+..
T Consensus 21 ~LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~ 70 (391)
T COG5432 21 GLDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQPFCPVCREDPC 70 (391)
T ss_pred cchhHHHhhhhhheeecceecccccchhHHHHHHHhcCCCCCccccccHH
Confidence 34556899999999998 55599999999999865 48999998764
No 71
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.00011 Score=73.55 Aligned_cols=41 Identities=29% Similarity=0.733 Sum_probs=35.3
Q ss_pred CCcccccccCCcc----ceeCCCCccchhhhhcCC-----CCCccccccc
Q 013848 389 NHVCPICLTDPKD----MAFGCGHQTCCGCGQDLD-----LCPICRSFIQ 429 (435)
Q Consensus 389 ~~~CpICl~~~~d----v~~~CGH~fC~~C~~~l~-----~CPiCR~~i~ 429 (435)
..+|.||++.+.. +++||.|.|-..|+.+|. .||.||.++.
T Consensus 323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred CceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCC
Confidence 3799999998754 567999999999999884 7999999875
No 72
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=97.17 E-value=0.0057 Score=67.20 Aligned_cols=166 Identities=13% Similarity=0.209 Sum_probs=106.4
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcc-cccCCCCccceeeeCCCCCCCCcccccCCCCC
Q 013848 94 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTL-SSFDEDNLIPCFGFGDASTHDQEVFSFYPDEK 172 (435)
Q Consensus 94 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl-~~yD~D~~ip~fGFGa~~~~~~~vF~~~~~~~ 172 (435)
..+++.||.|+|+. .|.-..|-.++-.+| ..|-....+-++.|+.... ..+++.
T Consensus 402 ~~vvfvvD~SGSM~------------------~~rl~~aK~a~~~ll~~ay~~rD~v~lI~F~g~~a--~~~lpp----- 456 (584)
T PRK13406 402 TTTIFVVDASGSAA------------------LHRLAEAKGAVELLLAEAYVRRDQVALVAFRGRGA--ELLLPP----- 456 (584)
T ss_pred ccEEEEEECCCCCc------------------HhHHHHHHHHHHHHHHhhcCCCCEEEEEEECCCce--eEEcCC-----
Confidence 67999999999983 145566666666666 3476666899999965321 112221
Q ss_pred ccCCHHHHHHHHHHhcCcccccCCCChHHHHHHHHHHHHhc--CCceEEEEEEeCCcccccCCcccCccchhHHHHHHHH
Q 013848 173 FCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHS--GGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAI 250 (435)
Q Consensus 173 ~~~G~~gvl~~Yr~~~~~v~l~GPT~fapII~~a~~~~~~~--~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~T~~aI 250 (435)
...++.+. +.+..+.-.|-|.++.-|..|.+.+++. .+.-.++|+||||..+...+...|. ....++...+.
T Consensus 457 -T~~~~~~~----~~L~~l~~gGgTpL~~gL~~A~~~l~~~~~~~~~~~iVLlTDG~~n~~~~~~~~~-~~~~~~~~~~a 530 (584)
T PRK13406 457 -TRSLVRAK----RSLAGLPGGGGTPLAAGLDAAAALALQVRRKGMTPTVVLLTDGRANIARDGTAGR-AQAEEDALAAA 530 (584)
T ss_pred -CcCHHHHH----HHHhcCCCCCCChHHHHHHHHHHHHHHhccCCCceEEEEEeCCCCCCCccccccc-cchhhHHHHHH
Confidence 22444443 4455777889999999999999887654 2335788999999976422211111 11234445555
Q ss_pred HHhcCCCeEEEEEecCCCCCCcccccCCCCCccccceeeeeccccc
Q 013848 251 VKASEYPLSIILVGVGDGPWDMMREFDDNIPARAFDNFQFVNFTEI 296 (435)
Q Consensus 251 v~AS~~PLSIIiVGVGd~~f~~m~~lDd~~~~R~~DnvqFV~f~~~ 296 (435)
..+...-+.+++|++|......|++|=+.+. ..|+.+.+.
T Consensus 531 ~~~~~~gi~~~vId~g~~~~~~~~~LA~~~g------g~y~~l~~~ 570 (584)
T PRK13406 531 RALRAAGLPALVIDTSPRPQPQARALAEAMG------ARYLPLPRA 570 (584)
T ss_pred HHHHhcCCeEEEEecCCCCcHHHHHHHHhcC------CeEEECCCC
Confidence 6666667889999999887667776644333 345665555
No 73
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.15 E-value=0.00014 Score=58.48 Aligned_cols=44 Identities=20% Similarity=0.288 Sum_probs=33.1
Q ss_pred CCCcccccccCCcc-ceeCCCCccchhhhhcC-----CCCCccccccccc
Q 013848 388 DNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL-----DLCPICRSFIQTR 431 (435)
Q Consensus 388 e~~~CpICl~~~~d-v~~~CGH~fC~~C~~~l-----~~CPiCR~~i~~~ 431 (435)
+.+.|+||.+.+++ ++++|||.|+..|+..+ ..||+|++++...
T Consensus 3 ~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~ 52 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSES 52 (73)
T ss_dssp GGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGG
T ss_pred cccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcc
Confidence 56899999999999 66799999999999865 4799999988753
No 74
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.00022 Score=73.27 Aligned_cols=41 Identities=32% Similarity=0.758 Sum_probs=34.5
Q ss_pred CcccccccCCcc----ceeCCCCccchhhhhcCC-----CCCcccccccc
Q 013848 390 HVCPICLTDPKD----MAFGCGHQTCCGCGQDLD-----LCPICRSFIQT 430 (435)
Q Consensus 390 ~~CpICl~~~~d----v~~~CGH~fC~~C~~~l~-----~CPiCR~~i~~ 430 (435)
..|.||+|.++. .+|||.|.|-+.|+..|. .||+|++.+.+
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 599999998776 346999999999998873 59999997754
No 75
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=97.04 E-value=0.011 Score=65.12 Aligned_cols=155 Identities=14% Similarity=0.176 Sum_probs=93.6
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccc-cCCCCccceeeeCCCCCCCCcccccCCCCC
Q 013848 94 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSS-FDEDNLIPCFGFGDASTHDQEVFSFYPDEK 172 (435)
Q Consensus 94 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~-yD~D~~ip~fGFGa~~~~~~~vF~~~~~~~ 172 (435)
..++|.||-|+|+. .+..+.|-..+..+|.. |-....+-++.|+.... ..++++
T Consensus 408 ~~v~fvvD~SGSM~------------------~~rl~~aK~av~~Ll~~~~~~~D~v~Li~F~~~~a--~~~lp~----- 462 (589)
T TIGR02031 408 RLLIFVVDASGSAA------------------VARMSEAKGAVELLLGEAYVHRDQVSLIAFRGTAA--EVLLPP----- 462 (589)
T ss_pred ceEEEEEECCCCCC------------------hHHHHHHHHHHHHHHHhhccCCCEEEEEEECCCCc--eEECCC-----
Confidence 34889999999994 14567777777776653 43344799999975421 112222
Q ss_pred ccCCHHHHHHHHHHhcCcccccCCCChHHHHHHHHHHHHhcC--CceEEEEEEeCCcccccCCcccCccchh---HHHH-
Q 013848 173 FCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSG--GQYHVLVIIADGQVTRSVDTEHGQLSSQ---EKKT- 246 (435)
Q Consensus 173 ~~~G~~gvl~~Yr~~~~~v~l~GPT~fapII~~a~~~~~~~~--~~Y~VLlIiTDG~i~d~~d~~~~~~~~~---~~~T- 246 (435)
-.+.+.+. +.+..+...|.|.++.-|..|.+.+++.. ..-.++|+||||.-+-..+.......++ .++.
T Consensus 463 -t~~~~~~~----~~L~~l~~gGgTpL~~gL~~A~~~~~~~~~~~~~~~ivllTDG~~nv~~~~~~~~~~~~~~~~~~~~ 537 (589)
T TIGR02031 463 -SRSVEQAK----RRLDVLPGGGGTPLAAGLAAAFQTALQARSSGGTPTIVLITDGRGNIPLDGDPESIKADREQAAEEA 537 (589)
T ss_pred -CCCHHHHH----HHHhcCCCCCCCcHHHHHHHHHHHHHHhcccCCceEEEEECCCCCCCCCCcccccccccchhHHHHH
Confidence 23444443 45677888999999999999999876532 2236789999998653221000000110 1111
Q ss_pred HHHHHHhcCCCeEEEEEecCCCCCC--cccccCC
Q 013848 247 VEAIVKASEYPLSIILVGVGDGPWD--MMREFDD 278 (435)
Q Consensus 247 ~~aIv~AS~~PLSIIiVGVGd~~f~--~m~~lDd 278 (435)
..+........+.+++||+|.+..+ .|++|=+
T Consensus 538 ~~~a~~~~~~gi~~~vid~~~~~~~~~~~~~lA~ 571 (589)
T TIGR02031 538 LALARKIREAGMPALVIDTAMRFVSTGFAQKLAR 571 (589)
T ss_pred HHHHHHHHhcCCeEEEEeCCCCCccchHHHHHHH
Confidence 2222223355689999999986443 3665543
No 76
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.00036 Score=67.09 Aligned_cols=45 Identities=29% Similarity=0.701 Sum_probs=38.4
Q ss_pred cccccccCCcccee-CCCCc-cchhhhhcCCCCCccccccccccccC
Q 013848 391 VCPICLTDPKDMAF-GCGHQ-TCCGCGQDLDLCPICRSFIQTRIKLY 435 (435)
Q Consensus 391 ~CpICl~~~~dv~~-~CGH~-fC~~C~~~l~~CPiCR~~i~~~irly 435 (435)
.|..|.+....|++ ||.|. +|..|...+..||+|+.+....+.+|
T Consensus 160 ~Cr~C~~~~~~VlllPCrHl~lC~~C~~~~~~CPiC~~~~~s~~~v~ 206 (207)
T KOG1100|consen 160 SCRKCGEREATVLLLPCRHLCLCGICDESLRICPICRSPKTSSVEVN 206 (207)
T ss_pred cceecCcCCceEEeecccceEecccccccCccCCCCcChhhceeecc
Confidence 39999999988665 99999 56699988889999999998877665
No 77
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=96.96 E-value=0.011 Score=58.79 Aligned_cols=136 Identities=18% Similarity=0.228 Sum_probs=81.0
Q ss_pred CceeceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccc-cCCCCccceeeeCCCCCCCCcccccCC
Q 013848 91 LESSNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSS-FDEDNLIPCFGFGDASTHDQEVFSFYP 169 (435)
Q Consensus 91 l~~~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~-yD~D~~ip~fGFGa~~~~~~~vF~~~~ 169 (435)
.. +++++.||.|+|+. +..+.|..++...|.. +..+..+-++.|++.... ++.|.
T Consensus 52 ~p-~~vvlvlD~SgSM~-------------------~~~~~a~~a~~~~l~~~l~~~d~v~lv~f~~~~~~---~~~~t- 107 (296)
T TIGR03436 52 LP-LTVGLVIDTSGSMR-------------------NDLDRARAAAIRFLKTVLRPNDRVFVVTFNTRLRL---LQDFT- 107 (296)
T ss_pred CC-ceEEEEEECCCCch-------------------HHHHHHHHHHHHHHHhhCCCCCEEEEEEeCCceeE---eecCC-
Confidence 44 68999999999984 2345666666666665 567789999999986432 22332
Q ss_pred CCCccCCHHHHHHHHHHhcC-----------cccccCCCChHHHHHHHH-HHHHhcC----CceEEEEEEeCCcccccCC
Q 013848 170 DEKFCNGFEEVLRRYRELVP-----------HLRLAGPTSFAPIIEMAI-TIVEHSG----GQYHVLVIIADGQVTRSVD 233 (435)
Q Consensus 170 ~~~~~~G~~gvl~~Yr~~~~-----------~v~l~GPT~fapII~~a~-~~~~~~~----~~Y~VLlIiTDG~i~d~~d 233 (435)
...+.+.++-....+ .+...|.|.+..-|..+. +...+.. +. -++|+||||.-+.+.
T Consensus 108 -----~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~g~T~l~~al~~aa~~~~~~~~~~~p~r-k~iIllTDG~~~~~~- 180 (296)
T TIGR03436 108 -----SDPRLLEAALNRLKPPLRTDYNSSGAFVRDGGGTALYDAITLAALEQLANALAGIPGR-KALIVISDGGDNRSR- 180 (296)
T ss_pred -----CCHHHHHHHHHhccCCCccccccccccccCCCcchhHHHHHHHHHHHHHHhhcCCCCC-eEEEEEecCCCcchH-
Confidence 234444444443322 123367788777766554 3333221 22 578999999754310
Q ss_pred cccCccchhHHHHHHHHHHhcCCCeEEEEEecCC
Q 013848 234 TEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGD 267 (435)
Q Consensus 234 ~~~~~~~~~~~~T~~aIv~AS~~PLSIIiVGVGd 267 (435)
.+.+++++.+ .+.-+.|..||+|+
T Consensus 181 -------~~~~~~~~~~---~~~~v~vy~I~~~~ 204 (296)
T TIGR03436 181 -------DTLERAIDAA---QRADVAIYSIDARG 204 (296)
T ss_pred -------HHHHHHHHHH---HHcCCEEEEeccCc
Confidence 1233444443 34567788888875
No 78
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=96.95 E-value=0.011 Score=56.18 Aligned_cols=164 Identities=13% Similarity=0.212 Sum_probs=102.3
Q ss_pred CceeceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCCC---CccceeeeCCCCCCCCccccc
Q 013848 91 LESSNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDED---NLIPCFGFGDASTHDQEVFSF 167 (435)
Q Consensus 91 l~~~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~yD~D---~~ip~fGFGa~~~~~~~vF~~ 167 (435)
+|. .+|+||.|.|+...+ | .+|-++.+...+..++..|-+. ..+-+..|+++.... +.++
T Consensus 3 ~ea--~vi~lD~S~sM~a~D---~----------~PnRL~aak~~i~~~~~~f~~~np~~~vGlv~fag~~a~v--~~pl 65 (187)
T cd01452 3 LEA--TMICIDNSEYMRNGD---Y----------PPTRFQAQADAVNLICQAKTRSNPENNVGLMTMAGNSPEV--LVTL 65 (187)
T ss_pred ceE--EEEEEECCHHHHcCC---C----------CCCHHHHHHHHHHHHHHHHHhcCCCccEEEEEecCCceEE--EECC
Confidence 453 799999999985321 1 4799999999999887555443 467778888743211 1122
Q ss_pred CCCCCccCCHHHHHHHHHHhcCcccccCCCChHHHHHHHHHHHHhcC---CceEEEEEEeCCcccccCCcccCccchhHH
Q 013848 168 YPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSG---GQYHVLVIIADGQVTRSVDTEHGQLSSQEK 244 (435)
Q Consensus 168 ~~~~~~~~G~~gvl~~Yr~~~~~v~l~GPT~fapII~~a~~~~~~~~---~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~ 244 (435)
+ ...+.++.. +..+.+.|-+++...|+.|....+... ..=-|++|++++.-.| +.
T Consensus 66 T------~D~~~~~~~----L~~i~~~g~~~l~~AL~~A~~~L~~~~~~~~~~rivi~v~S~~~~d------------~~ 123 (187)
T cd01452 66 T------NDQGKILSK----LHDVQPKGKANFITGIQIAQLALKHRQNKNQKQRIVAFVGSPIEED------------EK 123 (187)
T ss_pred C------CCHHHHHHH----HHhCCCCCcchHHHHHHHHHHHHhcCCCcCCcceEEEEEecCCcCC------------HH
Confidence 2 234444443 345667799999999999987765432 1225666776664333 45
Q ss_pred HHHHHHHHhcCCCeEEEEEecCCCC--CCcccccCCCCCccccceeeeecccc
Q 013848 245 KTVEAIVKASEYPLSIILVGVGDGP--WDMMREFDDNIPARAFDNFQFVNFTE 295 (435)
Q Consensus 245 ~T~~aIv~AS~~PLSIIiVGVGd~~--f~~m~~lDd~~~~R~~DnvqFV~f~~ 295 (435)
...+++.++.+.-+.|-+||+|+.. =+.++.|-+... .-||-+||....
T Consensus 124 ~i~~~~~~lkk~~I~v~vI~~G~~~~~~~~l~~~~~~~~--~~~~s~~~~~~~ 174 (187)
T cd01452 124 DLVKLAKRLKKNNVSVDIINFGEIDDNTEKLTAFIDAVN--GKDGSHLVSVPP 174 (187)
T ss_pred HHHHHHHHHHHcCCeEEEEEeCCCCCCHHHHHHHHHHhc--CCCCceEEEeCC
Confidence 5556777777778999999999762 223333322222 136777776443
No 79
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.93 E-value=0.00047 Score=72.23 Aligned_cols=46 Identities=26% Similarity=0.670 Sum_probs=36.7
Q ss_pred CCCCCCCCcccccccCCcc-c----eeCCCCccchhhhhcCC--CCCcccccc
Q 013848 383 ASSTSDNHVCPICLTDPKD-M----AFGCGHQTCCGCGQDLD--LCPICRSFI 428 (435)
Q Consensus 383 ~~~l~e~~~CpICl~~~~d-v----~~~CGH~fC~~C~~~l~--~CPiCR~~i 428 (435)
...+.|..+|||||+.... + +..|.|.|-|.|+..|+ .||+||-..
T Consensus 169 ~~~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~scpvcR~~q 221 (493)
T KOG0804|consen 169 PTGLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDSSCPVCRYCQ 221 (493)
T ss_pred CCCcccCCCcchhHhhcCccccceeeeecccccchHHHhhcccCcChhhhhhc
Confidence 3345677899999998665 2 24999999999999996 899999543
No 80
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=96.85 E-value=0.00046 Score=55.62 Aligned_cols=36 Identities=31% Similarity=0.841 Sum_probs=27.5
Q ss_pred CcccccccCC-----------cc--cee-CCCCccchhhhhcC----CCCCccc
Q 013848 390 HVCPICLTDP-----------KD--MAF-GCGHQTCCGCGQDL----DLCPICR 425 (435)
Q Consensus 390 ~~CpICl~~~-----------~d--v~~-~CGH~fC~~C~~~l----~~CPiCR 425 (435)
..|.||++.+ .+ +++ .|||.|...|+.+| ..||+||
T Consensus 20 d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 20 DNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp SBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 3599999877 12 333 89999999999866 4899998
No 81
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=96.62 E-value=0.035 Score=61.57 Aligned_cols=141 Identities=15% Similarity=0.215 Sum_probs=87.9
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhccc-ccCCCCccceeeeCCCCCCCCcccccCCCCC
Q 013848 94 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLS-SFDEDNLIPCFGFGDASTHDQEVFSFYPDEK 172 (435)
Q Consensus 94 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~-~yD~D~~ip~fGFGa~~~~~~~vF~~~~~~~ 172 (435)
..++|.||.|+|+.- .+..+.|...+..++. .|-....+-+++|++... ..++++
T Consensus 466 ~~vv~vvD~SgSM~~-----------------~~rl~~ak~a~~~ll~~a~~~~D~v~lI~F~g~~a--~~~~p~----- 521 (633)
T TIGR02442 466 NLVIFVVDASGSMAA-----------------RGRMAAAKGAVLSLLRDAYQKRDKVALITFRGEEA--EVLLPP----- 521 (633)
T ss_pred ceEEEEEECCccCCC-----------------ccHHHHHHHHHHHHHHHhhcCCCEEEEEEECCCCc--eEEcCC-----
Confidence 468899999999951 2466677777766664 466667899999975311 112222
Q ss_pred ccCCHHHHHHHHHHhcCcccccCCCChHHHHHHHHHHHHh----cCCceEEEEEEeCCcccccCCcccCccchhHHHHHH
Q 013848 173 FCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEH----SGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVE 248 (435)
Q Consensus 173 ~~~G~~gvl~~Yr~~~~~v~l~GPT~fapII~~a~~~~~~----~~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~T~~ 248 (435)
-.+.+.+. +.+..+...|-|.++.-|..|.+.++. ....=.++|+||||.-+.+ |. + ..-.++..+
T Consensus 522 -t~~~~~~~----~~L~~l~~gG~Tpl~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~-~~--~--~~~~~~~~~ 591 (633)
T TIGR02442 522 -TSSVELAA----RRLEELPTGGRTPLAAGLLKAAEVLSNELLRDDDGRPLLVVITDGRANVA-DG--G--EPPTDDART 591 (633)
T ss_pred -CCCHHHHH----HHHHhCCCCCCCCHHHHHHHHHHHHHHhhccCCCCceEEEEECCCCCCCC-CC--C--CChHHHHHH
Confidence 23444333 344556778999999999999988773 2233468899999987642 11 1 011233333
Q ss_pred HHHHhcCCCeEEEEEecCCC
Q 013848 249 AIVKASEYPLSIILVGVGDG 268 (435)
Q Consensus 249 aIv~AS~~PLSIIiVGVGd~ 268 (435)
+-....+.-+-+++|+.+.+
T Consensus 592 ~a~~l~~~~i~~~vIdt~~~ 611 (633)
T TIGR02442 592 IAAKLAARGILFVVIDTESG 611 (633)
T ss_pred HHHHHHhcCCeEEEEeCCCC
Confidence 33333445677888888664
No 82
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.55 E-value=0.00099 Score=67.97 Aligned_cols=51 Identities=29% Similarity=0.737 Sum_probs=40.1
Q ss_pred CCCCCCCCCCcccccccCCcc-ceeCCCCccchhhhhcC------CCCCccccccccc
Q 013848 381 PPASSTSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL------DLCPICRSFIQTR 431 (435)
Q Consensus 381 ~~~~~l~e~~~CpICl~~~~d-v~~~CGH~fC~~C~~~l------~~CPiCR~~i~~~ 431 (435)
++....+++..|.||-+...- .++||+|..|.-|+-++ +.|++||..-..+
T Consensus 53 SaddtDEen~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e~V 110 (493)
T COG5236 53 SADDTDEENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTETEAV 110 (493)
T ss_pred cccccccccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCccccccceE
Confidence 344455677899999988777 45599999999999765 4899999876543
No 83
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.0015 Score=67.23 Aligned_cols=42 Identities=31% Similarity=0.795 Sum_probs=33.4
Q ss_pred CCCCcccccccCC-----------cc---ceeCCCCccchhhhhcC----CCCCcccccc
Q 013848 387 SDNHVCPICLTDP-----------KD---MAFGCGHQTCCGCGQDL----DLCPICRSFI 428 (435)
Q Consensus 387 ~e~~~CpICl~~~-----------~d---v~~~CGH~fC~~C~~~l----~~CPiCR~~i 428 (435)
.++..|-||++.. +| -.++|||.+--.|++.| .+||+||.++
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcc
Confidence 4568999999862 12 34699999999999866 4899999984
No 84
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.29 E-value=0.0014 Score=71.31 Aligned_cols=42 Identities=29% Similarity=0.746 Sum_probs=34.6
Q ss_pred CCCCcccccccCCcc------ceeCCCCccchhhhhcC----CCCCcccccc
Q 013848 387 SDNHVCPICLTDPKD------MAFGCGHQTCCGCGQDL----DLCPICRSFI 428 (435)
Q Consensus 387 ~e~~~CpICl~~~~d------v~~~CGH~fC~~C~~~l----~~CPiCR~~i 428 (435)
..+..|+||++.... ..++|||.||-.|+..| .+||+||..+
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~ 340 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVL 340 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhh
Confidence 346799999998666 34699999999999877 4899999843
No 85
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.0031 Score=62.73 Aligned_cols=42 Identities=29% Similarity=0.731 Sum_probs=34.5
Q ss_pred CCCcccccccCCcc-cee-CCCCccchhhhhcC------CCCCccccccc
Q 013848 388 DNHVCPICLTDPKD-MAF-GCGHQTCCGCGQDL------DLCPICRSFIQ 429 (435)
Q Consensus 388 e~~~CpICl~~~~d-v~~-~CGH~fC~~C~~~l------~~CPiCR~~i~ 429 (435)
.+.+|++|-+.+.. .+. +|||.+|..|+..- ..||.|-++..
T Consensus 238 ~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 238 SDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred CCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 45799999999998 444 79999999999743 38999988765
No 86
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=0.0018 Score=67.86 Aligned_cols=46 Identities=24% Similarity=0.595 Sum_probs=38.1
Q ss_pred CCCCCCcccccccCCcc-ceeCCCCccchhhhhcC----CCCCcccccccc
Q 013848 385 STSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL----DLCPICRSFIQT 430 (435)
Q Consensus 385 ~l~e~~~CpICl~~~~d-v~~~CGH~fC~~C~~~l----~~CPiCR~~i~~ 430 (435)
....+..|.||+..+-. ++.+|||.||..|+.+. ..||.||..+..
T Consensus 80 ~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 80 EIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cccchhhhhhhHhhcCCCccccccccccHHHHHHHhccCCCCccccccccc
Confidence 34677899999998888 66799999999997754 479999988764
No 87
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.11 E-value=0.0023 Score=65.47 Aligned_cols=46 Identities=33% Similarity=0.916 Sum_probs=37.7
Q ss_pred CCCCcccccccCCcccee-CCCCccchhhhhc----CCCCCcccccccccc
Q 013848 387 SDNHVCPICLTDPKDMAF-GCGHQTCCGCGQD----LDLCPICRSFIQTRI 432 (435)
Q Consensus 387 ~e~~~CpICl~~~~dv~~-~CGH~fC~~C~~~----l~~CPiCR~~i~~~i 432 (435)
.|+.+||||...+.+++| ||+|.-|..|+.. .+.|=.|+..+..++
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~~~ 470 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVIDVI 470 (489)
T ss_pred cccccCcceecccchhhccCCCCchHHHHHHHHHhcCCeeeEecceeeehh
Confidence 466799999999999777 9999999999964 357888888776543
No 88
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.93 E-value=0.003 Score=65.04 Aligned_cols=46 Identities=28% Similarity=0.609 Sum_probs=36.8
Q ss_pred CCCCcccccccCCccce---------eCCCCccchhhhhcCC-----------CCCcccccccccc
Q 013848 387 SDNHVCPICLTDPKDMA---------FGCGHQTCCGCGQDLD-----------LCPICRSFIQTRI 432 (435)
Q Consensus 387 ~e~~~CpICl~~~~dv~---------~~CGH~fC~~C~~~l~-----------~CPiCR~~i~~~i 432 (435)
..+.+|-||++.-.+.. .+|.|.||..|+..|+ .||.||.+...++
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~ 224 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVN 224 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccccc
Confidence 35679999999876644 3799999999998663 7999999876554
No 89
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=95.93 E-value=0.0039 Score=52.07 Aligned_cols=29 Identities=24% Similarity=0.616 Sum_probs=23.4
Q ss_pred cee-CCCCccchhhhhcC-------CCCCcccccccc
Q 013848 402 MAF-GCGHQTCCGCGQDL-------DLCPICRSFIQT 430 (435)
Q Consensus 402 v~~-~CGH~fC~~C~~~l-------~~CPiCR~~i~~ 430 (435)
+++ .|+|.|-..|+.++ ..||+||++..-
T Consensus 47 lv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 47 LVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred eeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 344 89999999999765 379999998753
No 90
>PRK10997 yieM hypothetical protein; Provisional
Probab=95.88 E-value=0.15 Score=55.04 Aligned_cols=145 Identities=18% Similarity=0.199 Sum_probs=85.3
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHH-HHHhhcccccCCCCccceeeeCCCCCCCCcccccCCCCC
Q 013848 94 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAI-SIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEK 172 (435)
Q Consensus 94 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI-~~Ig~vl~~yD~D~~ip~fGFGa~~~~~~~vF~~~~~~~ 172 (435)
-.+||.||-|+|+. |- .-.|.+|+ -+++.+... .+..+-++.|++..... .+.
T Consensus 324 GpiII~VDtSGSM~--G~--------------ke~~AkalAaAL~~iAl~--q~dr~~li~Fs~~i~~~----~l~---- 377 (487)
T PRK10997 324 GPFIVCVDTSGSMG--GF--------------NEQCAKAFCLALMRIALA--ENRRCYIMLFSTEVVTY----ELT---- 377 (487)
T ss_pred CcEEEEEECCCCCC--CC--------------HHHHHHHHHHHHHHHHHh--cCCCEEEEEecCCceee----ccC----
Confidence 46999999999994 21 12555553 333333322 23356688998864321 121
Q ss_pred ccCCHHHHHHHHHHhcCcccccCCCChHHHHHHHHHHHHhcCCceEEEEEEeCCcccccCCcccCccchhHHHHHHHHHH
Q 013848 173 FCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVK 252 (435)
Q Consensus 173 ~~~G~~gvl~~Yr~~~~~v~l~GPT~fapII~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~T~~aIv~ 252 (435)
.-.|+..+++.-.. .+.|.|++++.++.+++.+++..-.=..+|||+|+..... +.++.+.++.+.+
T Consensus 378 ~~~gl~~ll~fL~~-----~f~GGTDl~~aL~~al~~l~~~~~r~adIVVISDF~~~~~--------~eel~~~L~~Lk~ 444 (487)
T PRK10997 378 GPDGLEQAIRFLSQ-----SFRGGTDLAPCLRAIIEKMQGREWFDADAVVISDFIAQRL--------PDELVAKVKELQR 444 (487)
T ss_pred CccCHHHHHHHHHH-----hcCCCCcHHHHHHHHHHHHcccccCCceEEEECCCCCCCC--------hHHHHHHHHHHHH
Confidence 23588887776533 2589999999999999888754222357899999965431 1234455555555
Q ss_pred hcCCCeEEEEEecCCCCCCcccccCC
Q 013848 253 ASEYPLSIILVGVGDGPWDMMREFDD 278 (435)
Q Consensus 253 AS~~PLSIIiVGVGd~~f~~m~~lDd 278 (435)
....=+--+.||- .+.=+.|+.||.
T Consensus 445 ~~~~rf~~l~i~~-~~~p~l~~ifD~ 469 (487)
T PRK10997 445 QHQHRFHAVAMSA-HGKPGIMRIFDH 469 (487)
T ss_pred hcCcEEEEEEeCC-CCCchHHHhcCe
Confidence 4455444444442 122233666664
No 91
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=95.82 E-value=0.1 Score=50.33 Aligned_cols=121 Identities=19% Similarity=0.220 Sum_probs=73.6
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHH-HHHhhcccccCCCCccceeeeCCCCCCCCcccccCCCCC
Q 013848 94 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAI-SIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEK 172 (435)
Q Consensus 94 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI-~~Ig~vl~~yD~D~~ip~fGFGa~~~~~~~vF~~~~~~~ 172 (435)
..++|.+|.|+|+.+ |...+ ..+-.+...+. .+-+|-|+.........+ .
T Consensus 58 ~~lvvl~DvSGSM~~--------------------~s~~~l~~~~~l~~~~~---~~~~f~F~~~l~~vT~~l--~---- 108 (222)
T PF05762_consen 58 RRLVVLCDVSGSMAG--------------------YSEFMLAFLYALQRQFR---RVRVFVFSTRLTEVTPLL--R---- 108 (222)
T ss_pred ccEEEEEeCCCChHH--------------------HHHHHHHHHHHHHHhCC---CEEEEEEeeehhhhhhhh--c----
Confidence 379999999999952 22222 22222333333 788999997654222211 1
Q ss_pred ccCCHHHHHHHHHHhcCcccccCCCChHHHHHHHHHHHHhcCCceEEEEEEeCCcccccCCcccCccchhHHHHHHHHHH
Q 013848 173 FCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVK 252 (435)
Q Consensus 173 ~~~G~~gvl~~Yr~~~~~v~l~GPT~fapII~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~T~~aIv~ 252 (435)
-.+.++.+......... ++|-|+++..++++.+......-.-.++|||+||.-++. .+...+.++.|.+
T Consensus 109 -~~~~~~~l~~~~~~~~~--~~GgTdi~~aL~~~~~~~~~~~~~~t~vvIiSDg~~~~~--------~~~~~~~l~~l~~ 177 (222)
T PF05762_consen 109 -RRDPEEALARLSALVQS--FGGGTDIGQALREFLRQYARPDLRRTTVVIISDGWDTND--------PEPLAEELRRLRR 177 (222)
T ss_pred -cCCHHHHHHHHHhhccC--CCCccHHHHHHHHHHHHhhcccccCcEEEEEecccccCC--------hHHHHHHHHHHHH
Confidence 12445555554433333 889999999999999887644324578999999943331 2345555666665
Q ss_pred hc
Q 013848 253 AS 254 (435)
Q Consensus 253 AS 254 (435)
..
T Consensus 178 r~ 179 (222)
T PF05762_consen 178 RG 179 (222)
T ss_pred hC
Confidence 43
No 92
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=95.78 E-value=0.0045 Score=62.73 Aligned_cols=46 Identities=33% Similarity=0.757 Sum_probs=38.5
Q ss_pred CCCCCCcccccccCCccceeCC--CCccchhhhhc-CCCCCcccccccc
Q 013848 385 STSDNHVCPICLTDPKDMAFGC--GHQTCCGCGQD-LDLCPICRSFIQT 430 (435)
Q Consensus 385 ~l~e~~~CpICl~~~~dv~~~C--GH~fC~~C~~~-l~~CPiCR~~i~~ 430 (435)
...+-+.||||.+.....++.| ||..|..|-.+ ...||.||.++..
T Consensus 44 ~~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 44 LDLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKVSNKCPTCRLPIGN 92 (299)
T ss_pred cchhhccCchhhccCcccceecCCCcEehhhhhhhhcccCCcccccccc
Confidence 3445589999999999988888 79999999854 4689999999983
No 93
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=95.73 E-value=0.071 Score=61.08 Aligned_cols=140 Identities=14% Similarity=0.149 Sum_probs=83.3
Q ss_pred eEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHH-hhcccccCCCCccceeeeCCCCCCCCcccccCCCCCcc
Q 013848 96 LIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISII-GKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKFC 174 (435)
Q Consensus 96 livaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~I-g~vl~~yD~D~~ip~fGFGa~~~~~~~vF~~~~~~~~~ 174 (435)
++++||.|+|+... + ..+.-++|++.. ..+ +..+..+-++.|+....-. ..|.+-.
T Consensus 307 VVLVLDvSGSM~g~-------d-------RL~~lkqAA~~fL~~~---l~~~DrVGLVtFsssA~vl---~pLt~It--- 363 (863)
T TIGR00868 307 VCLVLDKSGSMTVE-------D-------RLKRMNQAAKLFLLQT---VEKGSWVGMVTFDSAAYIK---NELIQIT--- 363 (863)
T ss_pred EEEEEECCcccccc-------C-------HHHHHHHHHHHHHHHh---CCCCCEEEEEEECCceeEe---eccccCC---
Confidence 88899999999521 0 134445555543 233 3456689999999864321 2222111
Q ss_pred CCHHHHHHHHHHhcCcccccCCCChHHHHHHHHHHHHhcCC--ceEEEEEEeCCcccccCCcccCccchhHHHHHHHHHH
Q 013848 175 NGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSGG--QYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVK 252 (435)
Q Consensus 175 ~G~~gvl~~Yr~~~~~v~l~GPT~fapII~~a~~~~~~~~~--~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~T~~aIv~ 252 (435)
. ....++-...++ ....|-|++..-|++|.+..++... .=-.+|+||||+-.+ ..+.+++
T Consensus 364 -s-~~dr~aL~~~L~-~~A~GGT~I~~GL~~Alq~L~~~~~~~~~~~IILLTDGedn~------------~~~~l~~--- 425 (863)
T TIGR00868 364 -S-SAERDALTANLP-TAASGGTSICSGLKAAFQVIKKSYQSTDGSEIVLLTDGEDNT------------ISSCFEE--- 425 (863)
T ss_pred -c-HHHHHHHHHhhc-cccCCCCcHHHHHHHHHHHHHhcccccCCCEEEEEeCCCCCC------------HHHHHHH---
Confidence 1 122333333444 3467889999999999998876431 124678889998553 2233333
Q ss_pred hcCCCeEEEEEecCCCCCCccccc
Q 013848 253 ASEYPLSIILVGVGDGPWDMMREF 276 (435)
Q Consensus 253 AS~~PLSIIiVGVGd~~f~~m~~l 276 (435)
+....+-|-.||+|...=..|+++
T Consensus 426 lk~~gVtI~TIg~G~dad~~L~~I 449 (863)
T TIGR00868 426 VKQSGAIIHTIALGPSAAKELEEL 449 (863)
T ss_pred HHHcCCEEEEEEeCCChHHHHHHH
Confidence 344578888899997543344443
No 94
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=95.48 E-value=0.0076 Score=46.33 Aligned_cols=44 Identities=23% Similarity=0.564 Sum_probs=35.5
Q ss_pred CCCCcccccccCCcc-ceeCCCCccchhhhh--cCCCCCcccccccc
Q 013848 387 SDNHVCPICLTDPKD-MAFGCGHQTCCGCGQ--DLDLCPICRSFIQT 430 (435)
Q Consensus 387 ~e~~~CpICl~~~~d-v~~~CGH~fC~~C~~--~l~~CPiCR~~i~~ 430 (435)
.....|..|....+. ++++|||..|..|-. +..-||+|..+|+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 5 QPEQPCVFCGFVGTKGTVLPCGHLICDNCFPGERYNGCPFCGTPFEF 51 (55)
T ss_pred ccceeEEEccccccccccccccceeeccccChhhccCCCCCCCcccC
Confidence 345688899888666 778999999999975 45689999998864
No 95
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=94.89 E-value=0.0047 Score=68.62 Aligned_cols=45 Identities=24% Similarity=0.465 Sum_probs=36.6
Q ss_pred CCCcccccccCCcc-ce---eCCCCccchhhhhcCC----CCCcccccccccc
Q 013848 388 DNHVCPICLTDPKD-MA---FGCGHQTCCGCGQDLD----LCPICRSFIQTRI 432 (435)
Q Consensus 388 e~~~CpICl~~~~d-v~---~~CGH~fC~~C~~~l~----~CPiCR~~i~~~i 432 (435)
....|++|+..+.+ .+ ..|+|.||..|+..|. +||+||..+..++
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v~ 174 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGEVK 174 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhheee
Confidence 34689999988877 22 2899999999999874 8999999887654
No 96
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=94.65 E-value=0.01 Score=56.64 Aligned_cols=42 Identities=29% Similarity=0.641 Sum_probs=33.8
Q ss_pred CCcccccccCCcc-ceeCCCCccchhhhhc----CCCCCcccccccc
Q 013848 389 NHVCPICLTDPKD-MAFGCGHQTCCGCGQD----LDLCPICRSFIQT 430 (435)
Q Consensus 389 ~~~CpICl~~~~d-v~~~CGH~fC~~C~~~----l~~CPiCR~~i~~ 430 (435)
...|-||-...+. ++..|||.||..|+.+ -..|-+|......
T Consensus 196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~G 242 (259)
T COG5152 196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKYQKGDECGVCGKATYG 242 (259)
T ss_pred ceeehhchhhccchhhhhcchhHHHHHHHHHhccCCcceecchhhcc
Confidence 3699999988887 7779999999999863 2479999775543
No 97
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=94.35 E-value=0.011 Score=60.23 Aligned_cols=47 Identities=23% Similarity=0.499 Sum_probs=38.2
Q ss_pred CCCCCcccccccCCccce-e-CCCCccchhhhhc----CCCCCcccccccccc
Q 013848 386 TSDNHVCPICLTDPKDMA-F-GCGHQTCCGCGQD----LDLCPICRSFIQTRI 432 (435)
Q Consensus 386 l~e~~~CpICl~~~~dv~-~-~CGH~fC~~C~~~----l~~CPiCR~~i~~~i 432 (435)
+....+|.+|-..+.|++ + .|-|.||..|+-+ ...||.|...|....
T Consensus 12 ~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t~ 64 (331)
T KOG2660|consen 12 LNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKTH 64 (331)
T ss_pred cccceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccCcc
Confidence 445679999999999944 3 9999999999964 468999998876543
No 98
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.30 E-value=0.023 Score=55.93 Aligned_cols=44 Identities=18% Similarity=0.399 Sum_probs=36.9
Q ss_pred CCCcccccccCCcc----cee-CCCCccchhhhhcCC----CCCccccccccc
Q 013848 388 DNHVCPICLTDPKD----MAF-GCGHQTCCGCGQDLD----LCPICRSFIQTR 431 (435)
Q Consensus 388 e~~~CpICl~~~~d----v~~-~CGH~fC~~C~~~l~----~CPiCR~~i~~~ 431 (435)
...+||||.+...| +++ +|||.+|.+|.+++. .||+|-.+...+
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdr 272 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDR 272 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCccc
Confidence 45799999998887 345 999999999999874 799999888654
No 99
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=94.16 E-value=0.027 Score=59.08 Aligned_cols=45 Identities=36% Similarity=0.927 Sum_probs=37.9
Q ss_pred CCCCCcccccccCCccc-e-eCCCCccchhhhhcC----CCCCcccccccc
Q 013848 386 TSDNHVCPICLTDPKDM-A-FGCGHQTCCGCGQDL----DLCPICRSFIQT 430 (435)
Q Consensus 386 l~e~~~CpICl~~~~dv-~-~~CGH~fC~~C~~~l----~~CPiCR~~i~~ 430 (435)
++++..|++|.....+. . ..|||.||..|+..+ ..||.||..+..
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~ 68 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQ 68 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhccCcCCcccccccch
Confidence 67889999999999994 3 399999999999866 379999887654
No 100
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=93.67 E-value=0.022 Score=42.70 Aligned_cols=37 Identities=41% Similarity=0.938 Sum_probs=17.8
Q ss_pred ccccccCCc--ccee---CCCCccchhhhhcC-----CCCCcccccc
Q 013848 392 CPICLTDPK--DMAF---GCGHQTCCGCGQDL-----DLCPICRSFI 428 (435)
Q Consensus 392 CpICl~~~~--dv~~---~CGH~fC~~C~~~l-----~~CPiCR~~i 428 (435)
||+|.+... +..| +||+..|..|..++ ..||.||++.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 788988762 2334 78999999997654 3799999864
No 101
>PF04641 Rtf2: Rtf2 RING-finger
Probab=93.64 E-value=0.049 Score=53.96 Aligned_cols=45 Identities=18% Similarity=0.473 Sum_probs=37.2
Q ss_pred CCCCCcccccccCCcc----cee-CCCCccchhhhhcCC---CCCcccccccc
Q 013848 386 TSDNHVCPICLTDPKD----MAF-GCGHQTCCGCGQDLD---LCPICRSFIQT 430 (435)
Q Consensus 386 l~e~~~CpICl~~~~d----v~~-~CGH~fC~~C~~~l~---~CPiCR~~i~~ 430 (435)
......|||+...+.. +++ +|||.|+..|+..+. .||+|-.++..
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k~~~~Cp~c~~~f~~ 162 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELKKSKKCPVCGKPFTE 162 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhcccccccccCCcccc
Confidence 3456899999987754 445 999999999999886 79999999864
No 102
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.54 E-value=0.028 Score=53.04 Aligned_cols=25 Identities=36% Similarity=0.925 Sum_probs=21.7
Q ss_pred ceeCCCCccchhhhhcCC----CCCcccc
Q 013848 402 MAFGCGHQTCCGCGQDLD----LCPICRS 426 (435)
Q Consensus 402 v~~~CGH~fC~~C~~~l~----~CPiCR~ 426 (435)
++++|||.||..|+..+. .||.||.
T Consensus 27 ~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 27 VLLPCGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred ccccccchHhHHHHHHhcCCCcCCcccCC
Confidence 667999999999998764 7999993
No 103
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.25 E-value=0.038 Score=55.66 Aligned_cols=42 Identities=24% Similarity=0.501 Sum_probs=35.1
Q ss_pred CcccccccCCcc-ceeCCCCccchhhhhcC----CCCCccccccccc
Q 013848 390 HVCPICLTDPKD-MAFGCGHQTCCGCGQDL----DLCPICRSFIQTR 431 (435)
Q Consensus 390 ~~CpICl~~~~d-v~~~CGH~fC~~C~~~l----~~CPiCR~~i~~~ 431 (435)
..|-||...+.+ |+..|||.||..|+... ..|.+|.+.+...
T Consensus 242 f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g~ 288 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKGEKCYVCSQQTHGS 288 (313)
T ss_pred ccccccccccccchhhcCCceeehhhhccccccCCcceecccccccc
Confidence 469999999998 77799999999998643 4799998877553
No 104
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.66 E-value=0.033 Score=59.39 Aligned_cols=43 Identities=28% Similarity=0.620 Sum_probs=32.6
Q ss_pred CCCCcccccccCC-----------------cc-ceeCCCCccchhhhhcCC-----CCCccccccc
Q 013848 387 SDNHVCPICLTDP-----------------KD-MAFGCGHQTCCGCGQDLD-----LCPICRSFIQ 429 (435)
Q Consensus 387 ~e~~~CpICl~~~-----------------~d-v~~~CGH~fC~~C~~~l~-----~CPiCR~~i~ 429 (435)
+....|+||+..- ++ ++.||.|.|-..|++.|. .||.||.++.
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence 4456899998621 12 334999999999998773 7999999875
No 105
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=92.07 E-value=0.059 Score=55.27 Aligned_cols=43 Identities=30% Similarity=0.780 Sum_probs=31.4
Q ss_pred CCCCcccccccCCcc--cee---CCCCccchhhhhcCC-----CCCccccccc
Q 013848 387 SDNHVCPICLTDPKD--MAF---GCGHQTCCGCGQDLD-----LCPICRSFIQ 429 (435)
Q Consensus 387 ~e~~~CpICl~~~~d--v~~---~CGH~fC~~C~~~l~-----~CPiCR~~i~ 429 (435)
.++..||.|++.... --| +||.+.|.-|...++ .||.||...+
T Consensus 12 deed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~ 64 (480)
T COG5175 12 DEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYD 64 (480)
T ss_pred cccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhcc
Confidence 344569999986433 223 789999999986543 7999998654
No 106
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism]
Probab=91.82 E-value=4 Score=40.83 Aligned_cols=145 Identities=16% Similarity=0.241 Sum_probs=93.4
Q ss_pred cCCceeceEEEEecCCCCCCCCCCCCCCCCcccCCCCCC-HHHHHHHHHhhc-ccccCCCCccceeeeCCCCCCCCcccc
Q 013848 89 AGLESSNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQN-PYEQAISIIGKT-LSSFDEDNLIPCFGFGDASTHDQEVFS 166 (435)
Q Consensus 89 ~Gl~~~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N-~Yq~AI~~Ig~v-l~~yD~D~~ip~fGFGa~~~~~~~vF~ 166 (435)
.|=...=++++||-|+|+.- + --+.|=-.+... -..|-.-..+-+.+|=.. +.++ -
T Consensus 74 ~~r~g~lvvfvVDASgSM~~------------------~~Rm~aaKG~~~~lL~dAYq~RdkvavI~F~G~---~A~l-l 131 (261)
T COG1240 74 EGRAGNLIVFVVDASGSMAA------------------RRRMAAAKGAALSLLRDAYQRRDKVAVIAFRGE---KAEL-L 131 (261)
T ss_pred ccCcCCcEEEEEeCcccchh------------------HHHHHHHHHHHHHHHHHHHHccceEEEEEecCC---cceE-E
Confidence 34443446789999999962 2 222222223332 245666678888888542 1121 1
Q ss_pred cCCCCCccCCHHHHHHHHHHhcCcccccCCCChHHHHHHHHHHHHhcC----CceEEEEEEeCCcccccCCcccCccchh
Q 013848 167 FYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSG----GQYHVLVIIADGQVTRSVDTEHGQLSSQ 242 (435)
Q Consensus 167 ~~~~~~~~~G~~gvl~~Yr~~~~~v~l~GPT~fapII~~a~~~~~~~~----~~Y~VLlIiTDG~i~d~~d~~~~~~~~~ 242 (435)
+.| -..++.+- +.+..+.-.|-|-.++-|.++.++..+.. ..-.|+|+||||...+-. .+.+
T Consensus 132 l~p----T~sv~~~~----~~L~~l~~GG~TPL~~aL~~a~ev~~r~~r~~p~~~~~~vviTDGr~n~~~-----~~~~- 197 (261)
T COG1240 132 LPP----TSSVELAE----RALERLPTGGKTPLADALRQAYEVLAREKRRGPDRRPVMVVITDGRANVPI-----PLGP- 197 (261)
T ss_pred eCC----cccHHHHH----HHHHhCCCCCCCchHHHHHHHHHHHHHhhccCCCcceEEEEEeCCccCCCC-----CCch-
Confidence 111 22444443 34556777899999999999999875542 345788999999976522 1222
Q ss_pred HHHHHHHHHHhcCCCeEEEEEecCCCC
Q 013848 243 EKKTVEAIVKASEYPLSIILVGVGDGP 269 (435)
Q Consensus 243 ~~~T~~aIv~AS~~PLSIIiVGVGd~~ 269 (435)
+.+|.++-.++...++-+++|....+.
T Consensus 198 ~~e~~~~a~~~~~~g~~~lvid~e~~~ 224 (261)
T COG1240 198 KAETLEAASKLRLRGIQLLVIDTEGSE 224 (261)
T ss_pred HHHHHHHHHHHhhcCCcEEEEecCCcc
Confidence 678888888888889888999887765
No 107
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=91.79 E-value=0.13 Score=52.46 Aligned_cols=48 Identities=27% Similarity=0.624 Sum_probs=34.0
Q ss_pred CCCcccccccCCcc-cee-CCCCccchhhhhc----CCCCCcccccc--ccccccC
Q 013848 388 DNHVCPICLTDPKD-MAF-GCGHQTCCGCGQD----LDLCPICRSFI--QTRIKLY 435 (435)
Q Consensus 388 e~~~CpICl~~~~d-v~~-~CGH~fC~~C~~~----l~~CPiCR~~i--~~~irly 435 (435)
+...||||+....+ .++ --|..||..|+-. -..||+-.-+. +.-+|+|
T Consensus 299 ~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~~v~~l~rl~ 354 (357)
T KOG0826|consen 299 DREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPASVDHLIRLF 354 (357)
T ss_pred ccccChhHHhccCCCceEEecceEEeHHHHHHHHHhcCCCCccCCcchHHHHHHHh
Confidence 45699999998777 554 5699999999963 35898754443 3445543
No 108
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=91.42 E-value=0.053 Score=58.39 Aligned_cols=43 Identities=23% Similarity=0.644 Sum_probs=35.0
Q ss_pred CCCCCcccccccCCcc-ceeCCCCccchhhhhcC---------CCCCcccccc
Q 013848 386 TSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL---------DLCPICRSFI 428 (435)
Q Consensus 386 l~e~~~CpICl~~~~d-v~~~CGH~fC~~C~~~l---------~~CPiCR~~i 428 (435)
-.++.+|.+|-+...+ +...|.|.||.-|+... .+||.|...+
T Consensus 533 nk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~L 585 (791)
T KOG1002|consen 533 NKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGL 585 (791)
T ss_pred ccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccc
Confidence 3456799999999999 66699999999999532 4899997654
No 109
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=90.79 E-value=0.083 Score=59.13 Aligned_cols=40 Identities=33% Similarity=0.877 Sum_probs=32.2
Q ss_pred CcccccccCCcc-ceeCCCCccchhhhhcC------CCCCcccccccc
Q 013848 390 HVCPICLTDPKD-MAFGCGHQTCCGCGQDL------DLCPICRSFIQT 430 (435)
Q Consensus 390 ~~CpICl~~~~d-v~~~CGH~fC~~C~~~l------~~CPiCR~~i~~ 430 (435)
..|.+|++ ... +...|||.+|.+|.... ..||+||..+..
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence 79999999 444 44599999999999754 269999987754
No 110
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.06 E-value=0.15 Score=50.97 Aligned_cols=43 Identities=21% Similarity=0.543 Sum_probs=32.3
Q ss_pred CCCcccccccCCcc-----------ceeCCCCccchhhhhcC------CCCCcccccccc
Q 013848 388 DNHVCPICLTDPKD-----------MAFGCGHQTCCGCGQDL------DLCPICRSFIQT 430 (435)
Q Consensus 388 e~~~CpICl~~~~d-----------v~~~CGH~fC~~C~~~l------~~CPiCR~~i~~ 430 (435)
++..|.||-..... -.+.|+|.|-..|++.| .+||-|++.++.
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl 282 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDL 282 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhH
Confidence 45699999654322 13599999988898866 489999998764
No 111
>COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=89.51 E-value=3.7 Score=43.96 Aligned_cols=135 Identities=17% Similarity=0.191 Sum_probs=83.2
Q ss_pred cCCceeceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHH-HHHhhcccccCCCCccceeeeCCCCCCCCccccc
Q 013848 89 AGLESSNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAI-SIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSF 167 (435)
Q Consensus 89 ~Gl~~~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI-~~Ig~vl~~yD~D~~ip~fGFGa~~~~~~~vF~~ 167 (435)
++.+ --++|-||=|+|+.-. +=+..+|+ -++.++... +++.+-++-|-.. .++..+
T Consensus 269 gk~~-GpvilllD~SGSM~G~----------------~e~~AKAvalAl~~~ala--enR~~~~~lF~s~-~~~~el--- 325 (437)
T COG2425 269 GKSE-GPVILLLDKSGSMSGF----------------KEQWAKAVALALMRIALA--ENRDCYVILFDSE-VIEYEL--- 325 (437)
T ss_pred cCCC-CCEEEEEeCCCCcCCc----------------HHHHHHHHHHHHHHHHHH--hccceEEEEeccc-ceeeee---
Confidence 4444 4799999999999521 11222222 122222222 3456778888662 111121
Q ss_pred CCCCCccCCHHHHHHHHHHhcCcccccCCCChHHHHHHHHHHHHhcC-CceEEEEEEeCCcccccCCcccCccchhHHHH
Q 013848 168 YPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSG-GQYHVLVIIADGQVTRSVDTEHGQLSSQEKKT 246 (435)
Q Consensus 168 ~~~~~~~~G~~gvl~~Yr~~~~~v~l~GPT~fapII~~a~~~~~~~~-~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~T 246 (435)
.+...|++++++-- ..+ +.|-|+|...|+.|++.+++.. .+ .=||+||||.-..+ .+....
T Consensus 326 ---~~k~~~~~e~i~fL----~~~-f~GGTD~~~~l~~al~~~k~~~~~~-adiv~ITDg~~~~~---------~~~~~~ 387 (437)
T COG2425 326 ---YEKKIDIEELIEFL----SYV-FGGGTDITKALRSALEDLKSRELFK-ADIVVITDGEDERL---------DDFLRK 387 (437)
T ss_pred ---cCCccCHHHHHHHH----hhh-cCCCCChHHHHHHHHHHhhcccccC-CCEEEEeccHhhhh---------hHHHHH
Confidence 23456899988742 223 3344999999999999998653 23 45699999975431 246778
Q ss_pred HHHHHHhcCCCeEEEEEe
Q 013848 247 VEAIVKASEYPLSIILVG 264 (435)
Q Consensus 247 ~~aIv~AS~~PLSIIiVG 264 (435)
++.+.++++.=+--|+||
T Consensus 388 v~e~~k~~~~rl~aV~I~ 405 (437)
T COG2425 388 VKELKKRRNARLHAVLIG 405 (437)
T ss_pred HHHHHHHhhceEEEEEec
Confidence 888888887776666655
No 112
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=88.16 E-value=0.098 Score=42.94 Aligned_cols=40 Identities=30% Similarity=0.602 Sum_probs=28.9
Q ss_pred CcccccccCCcc--cee-CCCCccchhhhhcCC-------CCCccccccc
Q 013848 390 HVCPICLTDPKD--MAF-GCGHQTCCGCGQDLD-------LCPICRSFIQ 429 (435)
Q Consensus 390 ~~CpICl~~~~d--v~~-~CGH~fC~~C~~~l~-------~CPiCR~~i~ 429 (435)
..||-|.-.-.| .++ -|.|.|-..|+.++. .||+||+..+
T Consensus 32 g~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 32 GCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 456666544444 344 799999999998763 7999999764
No 113
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=88.13 E-value=2.4 Score=40.72 Aligned_cols=138 Identities=19% Similarity=0.271 Sum_probs=77.1
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccc--cC-CCCccceeeeCCCCCC---CCcccccC
Q 013848 95 NLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSS--FD-EDNLIPCFGFGDASTH---DQEVFSFY 168 (435)
Q Consensus 95 nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~--yD-~D~~ip~fGFGa~~~~---~~~vF~~~ 168 (435)
-+.+-+|.++|+. ++.+|.. |.=.| .+...|.. |- +--.+-+.-||..... ..++-+|+
T Consensus 5 P~~lllDtSgSM~--------Ge~Ieal----N~Glq---~m~~~Lkqdp~Ale~v~lsIVTF~~~a~~~~pf~~~~nF~ 69 (207)
T COG4245 5 PCYLLLDTSGSMI--------GEPIEAL----NAGLQ---MMIDTLKQDPYALERVELSIVTFGGPARVIQPFTDAANFN 69 (207)
T ss_pred CEEEEEecCcccc--------cccHHHH----HHHHH---HHHHHHHhChhhhheeEEEEEEecCcceEEechhhHhhcC
Confidence 4678899999984 4567743 33222 22222221 11 1125777888853211 11223343
Q ss_pred CCCCccCCHHHHHHHHHHhcCcccccCCCChHHHHHHHHHHHHhc--------CCce-EEEEEEeCCcccccCCcccCcc
Q 013848 169 PDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHS--------GGQY-HVLVIIADGQVTRSVDTEHGQL 239 (435)
Q Consensus 169 ~~~~~~~G~~gvl~~Yr~~~~~v~l~GPT~fapII~~a~~~~~~~--------~~~Y-~VLlIiTDG~i~d~~d~~~~~~ 239 (435)
+ |.+.-.|-|...-.|+.+++.+++. .+.| .+..+||||..+|
T Consensus 70 ~-------------------p~L~a~GgT~lGaAl~~a~d~Ie~~~~~~~a~~kgdyrP~vfLiTDG~PtD--------- 121 (207)
T COG4245 70 P-------------------PILTAQGGTPLGAALTLALDMIEERKRKYDANGKGDYRPWVFLITDGEPTD--------- 121 (207)
T ss_pred C-------------------CceecCCCCchHHHHHHHHHHHHHHHhhcccCCccccceEEEEecCCCcch---------
Confidence 3 4455668899999999999988654 1334 4556789999997
Q ss_pred chhHHHH--HHHHHHhcCCCeEEEEEecCCCCCCcccccC
Q 013848 240 SSQEKKT--VEAIVKASEYPLSIILVGVGDGPWDMMREFD 277 (435)
Q Consensus 240 ~~~~~~T--~~aIv~AS~~PLSIIiVGVGd~~f~~m~~lD 277 (435)
+.++- +----+++.--+-+..||+-.++-..++++-
T Consensus 122 --~w~~~~~~~~~~~~~~k~v~a~~~G~~~ad~~~L~qit 159 (207)
T COG4245 122 --DWQAGAALVFQGERRAKSVAAFSVGVQGADNKTLNQIT 159 (207)
T ss_pred --HHHhHHHHhhhcccccceEEEEEecccccccHHHHHHH
Confidence 23332 3333334444444455555456655555554
No 114
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=87.51 E-value=0.24 Score=50.15 Aligned_cols=37 Identities=32% Similarity=0.727 Sum_probs=31.1
Q ss_pred CcccccccCCcc-cee-CCCCccchhhhhcC-----CCCCcccc
Q 013848 390 HVCPICLTDPKD-MAF-GCGHQTCCGCGQDL-----DLCPICRS 426 (435)
Q Consensus 390 ~~CpICl~~~~d-v~~-~CGH~fC~~C~~~l-----~~CPiCR~ 426 (435)
+.|+.|-....+ +-. .|+|.||.+|+... ..||.|..
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 789999999988 445 79999999999843 48999965
No 115
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=87.27 E-value=0.28 Score=37.91 Aligned_cols=36 Identities=28% Similarity=0.423 Sum_probs=23.6
Q ss_pred CCCcccccccCCcc-cee-CCCCccchhhhhcCC------CCCc
Q 013848 388 DNHVCPICLTDPKD-MAF-GCGHQTCCGCGQDLD------LCPI 423 (435)
Q Consensus 388 e~~~CpICl~~~~d-v~~-~CGH~fC~~C~~~l~------~CPi 423 (435)
-...|||.+..+++ +.- .|||.|..+.+..+. .||.
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 45799999999999 443 999999999987542 6887
No 116
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.23 E-value=0.24 Score=52.08 Aligned_cols=30 Identities=30% Similarity=0.719 Sum_probs=24.4
Q ss_pred CCCcccccccCCcc---cee-CCCCccchhhhhc
Q 013848 388 DNHVCPICLTDPKD---MAF-GCGHQTCCGCGQD 417 (435)
Q Consensus 388 e~~~CpICl~~~~d---v~~-~CGH~fC~~C~~~ 417 (435)
....|.||++...- +.+ +|+|.||..|+..
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kd 216 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKD 216 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHH
Confidence 34689999998765 444 9999999999963
No 117
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=85.37 E-value=0.47 Score=39.61 Aligned_cols=31 Identities=23% Similarity=0.644 Sum_probs=24.5
Q ss_pred CCCCcccccccCCcc---ceeCCCCccchhhhhc
Q 013848 387 SDNHVCPICLTDPKD---MAFGCGHQTCCGCGQD 417 (435)
Q Consensus 387 ~e~~~CpICl~~~~d---v~~~CGH~fC~~C~~~ 417 (435)
.+...|.+|-....+ +++||||.+...|+.+
T Consensus 76 ~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~r 109 (109)
T PF10367_consen 76 TESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIKR 109 (109)
T ss_pred CCCCCccCcCCcCCCceEEEeCCCeEEecccccC
Confidence 456689999988776 4569999999898753
No 118
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=85.36 E-value=0.23 Score=39.81 Aligned_cols=43 Identities=28% Similarity=0.482 Sum_probs=19.7
Q ss_pred CCcccccccCCc-c---cee-----CCCCccchhhhhcCC---------------CCCccccccccc
Q 013848 389 NHVCPICLTDPK-D---MAF-----GCGHQTCCGCGQDLD---------------LCPICRSFIQTR 431 (435)
Q Consensus 389 ~~~CpICl~~~~-d---v~~-----~CGH~fC~~C~~~l~---------------~CPiCR~~i~~~ 431 (435)
+..|.||+.... + ..+ .|++.|-..|+..|. .||.|+++|.-+
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~~ 68 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISWS 68 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEGG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeEe
Confidence 468999998754 2 122 577667778886541 599999998643
No 119
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=84.96 E-value=0.36 Score=49.14 Aligned_cols=28 Identities=29% Similarity=0.832 Sum_probs=22.9
Q ss_pred eeCCCCccchhhhhc--CCCCCcccccccc
Q 013848 403 AFGCGHQTCCGCGQD--LDLCPICRSFIQT 430 (435)
Q Consensus 403 ~~~CGH~fC~~C~~~--l~~CPiCR~~i~~ 430 (435)
.++|.|.||.+|+.. .+.||.|-.+|.+
T Consensus 106 mIPCkHvFCl~CAr~~~dK~Cp~C~d~Vqr 135 (389)
T KOG2932|consen 106 MIPCKHVFCLECARSDSDKICPLCDDRVQR 135 (389)
T ss_pred ccccchhhhhhhhhcCccccCcCcccHHHH
Confidence 359999999999974 4589999877654
No 120
>PF03731 Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; InterPro: IPR005161 The Ku heterodimer (composed of Ku70 P12956 from SWISSPROT and Ku80 P13010 from SWISSPROT) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway. This is the N-terminal alpha/beta domain. This domain only makes a small contribution to the dimer interface. The domain comprises a six stranded beta sheet of the Rossman fold [].; PDB: 1JEQ_A 1JEY_A.
Probab=84.75 E-value=19 Score=33.98 Aligned_cols=145 Identities=12% Similarity=0.171 Sum_probs=78.1
Q ss_pred eEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccc---cCCCCccceeeeCCCCCCC-------Cccc
Q 013848 96 LIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSS---FDEDNLIPCFGFGDASTHD-------QEVF 165 (435)
Q Consensus 96 livaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~---yD~D~~ip~fGFGa~~~~~-------~~vF 165 (435)
+++.||.+.|+..... + ...+.+.|++.|-.+++. ......+-++.||...+.+ .+||
T Consensus 2 ~vflID~s~sM~~~~~-----------~-~~~~l~~al~~i~~~~~~ki~~~~kD~vgvvl~gt~~t~n~~~~~~~~~i~ 69 (224)
T PF03731_consen 2 TVFLIDVSPSMFEPSS-----------E-SESPLEEALKAIEDLMQQKIISSPKDEVGVVLFGTDETNNPDEDSGYENIF 69 (224)
T ss_dssp EEEEEE-SCGGGS-BT-----------T-CS-HHHHHHHHHHHHHHHHHHTT---EEEEEEES-SS-BST-TTT-STTEE
T ss_pred EEEEEECCHHHCCCCC-----------C-cchhHHHHHHHHHHHHHHHHcCCCCCeEEEEEEcCCCCCCcccccCCCceE
Confidence 6899999999963210 0 112788888888876653 3333579999999876644 3455
Q ss_pred ccCCCCCccCCHHHHHHHHHHhcCcccc----------cCCCChHHHHHHHHHHHHh--cCCc--eEEEEEEeCCccccc
Q 013848 166 SFYPDEKFCNGFEEVLRRYRELVPHLRL----------AGPTSFAPIIEMAITIVEH--SGGQ--YHVLVIIADGQVTRS 231 (435)
Q Consensus 166 ~~~~~~~~~~G~~gvl~~Yr~~~~~v~l----------~GPT~fapII~~a~~~~~~--~~~~--Y~VLlIiTDG~i~d~ 231 (435)
.+.+-+. -+++.+.+. ...++- .....+..++-.+..+..+ ...+ .--+++|||+.--.
T Consensus 70 ~l~~l~~--~~~~~l~~L----~~~~~~~~~~~~~~~~~~~~~l~~al~v~~~~~~~~~~~~k~~~krI~l~Td~d~p~- 142 (224)
T PF03731_consen 70 VLQPLDP--PSAERLKEL----EELLKPGDKFENFFSGSDEGDLSDALWVASDMFRERTCKKKKNKKRIFLFTDNDGPH- 142 (224)
T ss_dssp EEEECC----BHHHHHHH----HTTSHHHHHHHHHC-SSS---HHHHHHHHHHHHHCHCTTS-ECEEEEEEEES-SSTT-
T ss_pred EeecCCc--cCHHHHHHH----HHhhcccccccccCCCCCccCHHHHHHHHHHHHHHHhhcccCCCcEEEEEeCCCCCC-
Confidence 5543221 133333222 111111 2345677777777777654 2222 24567789875321
Q ss_pred CCcccCccchhHHHHHHH--HHHhcCCCeEEEEEec
Q 013848 232 VDTEHGQLSSQEKKTVEA--IVKASEYPLSIILVGV 265 (435)
Q Consensus 232 ~d~~~~~~~~~~~~T~~a--Iv~AS~~PLSIIiVGV 265 (435)
+ =.++.+.+++- +.+....-+.|.++.+
T Consensus 143 -----~-~~~~~~~~~~~l~~~Dl~~~~i~~~~~~l 172 (224)
T PF03731_consen 143 -----E-DDDELERIIQKLKAKDLQDNGIEIELFFL 172 (224)
T ss_dssp -----T--CCCHHHHHHHHHHHHHHHHTEEEEEEEC
T ss_pred -----C-CHHHHHHHHHhhccccchhcCcceeEeec
Confidence 1 12246666666 6667778888888888
No 121
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=82.62 E-value=0.38 Score=55.17 Aligned_cols=44 Identities=30% Similarity=0.607 Sum_probs=32.6
Q ss_pred CCCCcccccccCCc--ccee------CCCCccchhhhhcC------CCCCcccccccc
Q 013848 387 SDNHVCPICLTDPK--DMAF------GCGHQTCCGCGQDL------DLCPICRSFIQT 430 (435)
Q Consensus 387 ~e~~~CpICl~~~~--dv~~------~CGH~fC~~C~~~l------~~CPiCR~~i~~ 430 (435)
+.-.+|+||..... +-.+ -|.|.|-..|+-+| ..||+||..|+-
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseitf 1524 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEITF 1524 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCcccccccc
Confidence 45579999987543 2222 47899999999877 389999988763
No 122
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=81.71 E-value=1 Score=46.92 Aligned_cols=25 Identities=28% Similarity=0.595 Sum_probs=17.4
Q ss_pred CCCccchhhhhcCC-----------------CCCcccccccc
Q 013848 406 CGHQTCCGCGQDLD-----------------LCPICRSFIQT 430 (435)
Q Consensus 406 CGH~fC~~C~~~l~-----------------~CPiCR~~i~~ 430 (435)
|.-+.|.+|+-+|. .||+||+.+.-
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCi 352 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCI 352 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccccee
Confidence 44445778876541 69999999864
No 123
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=80.34 E-value=0.59 Score=55.74 Aligned_cols=44 Identities=27% Similarity=0.702 Sum_probs=32.1
Q ss_pred CCCCcccccccCCcc----ceeCCCCccchhhhhc-----C---------CCCCcccccccc
Q 013848 387 SDNHVCPICLTDPKD----MAFGCGHQTCCGCGQD-----L---------DLCPICRSFIQT 430 (435)
Q Consensus 387 ~e~~~CpICl~~~~d----v~~~CGH~fC~~C~~~-----l---------~~CPiCR~~i~~ 430 (435)
..+.+|.||+...-. +.+.|+|.|-..|..+ | ..||+|..+|.-
T Consensus 3484 D~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred ccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 345799999976433 4469999997777642 2 279999998864
No 124
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=79.63 E-value=0.88 Score=34.23 Aligned_cols=42 Identities=33% Similarity=0.781 Sum_probs=22.3
Q ss_pred cccccccCCccceeCCC-CccchhhhhcC----CCCCccccccccccc
Q 013848 391 VCPICLTDPKDMAFGCG-HQTCCGCGQDL----DLCPICRSFIQTRIK 433 (435)
Q Consensus 391 ~CpICl~~~~dv~~~CG-H~fC~~C~~~l----~~CPiCR~~i~~~ir 433 (435)
-|.-|+-..+.. +.|. |-.|..|+..+ ..||+|..++.++|+
T Consensus 4 nCKsCWf~~k~L-i~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtkir 50 (50)
T PF03854_consen 4 NCKSCWFANKGL-IKCSDHYLCLNCLTLMLSRSDRCPICGKPLPTKIR 50 (50)
T ss_dssp ---SS-S--SSE-EE-SS-EEEHHHHHHT-SSSSEETTTTEE----S-
T ss_pred cChhhhhcCCCe-eeecchhHHHHHHHHHhccccCCCcccCcCccccC
Confidence 577887555553 3575 77899999866 379999999988775
No 125
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=78.54 E-value=0.73 Score=41.70 Aligned_cols=41 Identities=29% Similarity=0.811 Sum_probs=33.1
Q ss_pred CcccccccCCcccee-----CCCCccchhhhhcCC-------CCCcccccccc
Q 013848 390 HVCPICLTDPKDMAF-----GCGHQTCCGCGQDLD-------LCPICRSFIQT 430 (435)
Q Consensus 390 ~~CpICl~~~~dv~~-----~CGH~fC~~C~~~l~-------~CPiCR~~i~~ 430 (435)
-+|-||.|...+-.| -||-..|.-|-..+| .||.|+..+.+
T Consensus 81 YeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 81 YECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred eeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 489999999888554 499999998876543 79999998865
No 126
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=78.05 E-value=0.42 Score=48.55 Aligned_cols=27 Identities=26% Similarity=0.485 Sum_probs=20.7
Q ss_pred CcccccccCCcc----ceeCCCCccchhhhh
Q 013848 390 HVCPICLTDPKD----MAFGCGHQTCCGCGQ 416 (435)
Q Consensus 390 ~~CpICl~~~~d----v~~~CGH~fC~~C~~ 416 (435)
..|.|||--+.+ ++.+|-|.+-+.|+.
T Consensus 116 gqCvICLygfa~~~~ft~T~C~Hy~H~~Cla 146 (368)
T KOG4445|consen 116 GQCVICLYGFASSPAFTVTACDHYMHFACLA 146 (368)
T ss_pred CceEEEEEeecCCCceeeehhHHHHHHHHHH
Confidence 579999887766 334999998888874
No 127
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=74.12 E-value=0.58 Score=55.23 Aligned_cols=40 Identities=43% Similarity=1.075 Sum_probs=33.4
Q ss_pred CCCcccccccCCcc--ceeCCCCccchhhhhcC----CCCCccccc
Q 013848 388 DNHVCPICLTDPKD--MAFGCGHQTCCGCGQDL----DLCPICRSF 427 (435)
Q Consensus 388 e~~~CpICl~~~~d--v~~~CGH~fC~~C~~~l----~~CPiCR~~ 427 (435)
+...|.||++..++ .++.|||.+||.|...+ ..||+|..-
T Consensus 1152 ~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi 1197 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYASSRCPICKSI 1197 (1394)
T ss_pred cccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHhccCcchhhh
Confidence 44599999999886 67799999999999866 489999753
No 128
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=73.82 E-value=1.8 Score=35.99 Aligned_cols=40 Identities=23% Similarity=0.463 Sum_probs=28.8
Q ss_pred CcccccccCC---cc--cee-CCCCccchhhhhcCC----CCCccccccc
Q 013848 390 HVCPICLTDP---KD--MAF-GCGHQTCCGCGQDLD----LCPICRSFIQ 429 (435)
Q Consensus 390 ~~CpICl~~~---~d--v~~-~CGH~fC~~C~~~l~----~CPiCR~~i~ 429 (435)
..|+-|.... .+ ++. -|.|.|--.|+.++. .||+||++..
T Consensus 32 ~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~ 81 (88)
T COG5194 32 GTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWV 81 (88)
T ss_pred CcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeE
Confidence 4566666522 22 334 799999999999873 7999999764
No 129
>PHA03096 p28-like protein; Provisional
Probab=72.27 E-value=1.2 Score=45.02 Aligned_cols=29 Identities=24% Similarity=0.365 Sum_probs=22.6
Q ss_pred CcccccccCCcc--------cee-CCCCccchhhhhcC
Q 013848 390 HVCPICLTDPKD--------MAF-GCGHQTCCGCGQDL 418 (435)
Q Consensus 390 ~~CpICl~~~~d--------v~~-~CGH~fC~~C~~~l 418 (435)
..|.||+++... -.+ .|-|.||-.|+..|
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~w 216 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIW 216 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHH
Confidence 589999986432 234 89999999999865
No 130
>PF11775 CobT_C: Cobalamin biosynthesis protein CobT VWA domain
Probab=71.50 E-value=12 Score=36.69 Aligned_cols=51 Identities=20% Similarity=0.438 Sum_probs=33.0
Q ss_pred CceEEEEEEeCCcccccC---CcccCccchhHHHHHHHHHHhcCCCeEEEEEecCC
Q 013848 215 GQYHVLVIIADGQVTRSV---DTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGD 267 (435)
Q Consensus 215 ~~Y~VLlIiTDG~i~d~~---d~~~~~~~~~~~~T~~aIv~AS~~PLSIIiVGVGd 267 (435)
.+=-||++|+||...|.. +-...-|..+++++++.|.. .-++-++-||||.
T Consensus 134 e~rkiLiViSDG~P~d~st~~~n~~~~L~~HLr~vi~~ie~--~~~Vel~aiGIg~ 187 (219)
T PF11775_consen 134 EQRKILIVISDGAPADDSTLSANDGDYLDAHLRQVIAEIET--RSDVELIAIGIGH 187 (219)
T ss_pred ccceEEEEEeCCCcCcccccccCChHHHHHHHHHHHHHHhc--cCCcEEEEEEcCC
Confidence 344699999999998621 11122355566666666653 3477788888886
No 131
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=68.61 E-value=2.8 Score=31.31 Aligned_cols=35 Identities=26% Similarity=0.697 Sum_probs=24.2
Q ss_pred cccccccCCc--c-ceeCCC-----CccchhhhhcC------CCCCccc
Q 013848 391 VCPICLTDPK--D-MAFGCG-----HQTCCGCGQDL------DLCPICR 425 (435)
Q Consensus 391 ~CpICl~~~~--d-v~~~CG-----H~fC~~C~~~l------~~CPiCR 425 (435)
.|.||++... + .+.||. |.+=..|+.+| ..||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4899998322 2 444885 55677999876 2799995
No 132
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.18 E-value=2.2 Score=48.64 Aligned_cols=41 Identities=29% Similarity=0.578 Sum_probs=32.2
Q ss_pred CcccccccCCcc--ceeCCCCccchhhhhc-CCCCCcccccccc
Q 013848 390 HVCPICLTDPKD--MAFGCGHQTCCGCGQD-LDLCPICRSFIQT 430 (435)
Q Consensus 390 ~~CpICl~~~~d--v~~~CGH~fC~~C~~~-l~~CPiCR~~i~~ 430 (435)
..|..|-....- |.|.|||.+-..|+.+ ...||.|+.....
T Consensus 841 skCs~C~~~LdlP~VhF~CgHsyHqhC~e~~~~~CP~C~~e~~~ 884 (933)
T KOG2114|consen 841 SKCSACEGTLDLPFVHFLCGHSYHQHCLEDKEDKCPKCLPELRG 884 (933)
T ss_pred eeecccCCccccceeeeecccHHHHHhhccCcccCCccchhhhh
Confidence 489999876655 4569999999999984 4689999875443
No 133
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=67.29 E-value=1.5 Score=39.77 Aligned_cols=30 Identities=20% Similarity=0.541 Sum_probs=23.9
Q ss_pred CCcccccccCCcc----ceeCCC------CccchhhhhcC
Q 013848 389 NHVCPICLTDPKD----MAFGCG------HQTCCGCGQDL 418 (435)
Q Consensus 389 ~~~CpICl~~~~d----v~~~CG------H~fC~~C~~~l 418 (435)
..+|.||++.-.+ +.+.|| |+||.+|+.+|
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw 65 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRW 65 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHH
Confidence 5789999987544 445887 77999999988
No 134
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=65.86 E-value=1.7 Score=48.69 Aligned_cols=44 Identities=32% Similarity=0.628 Sum_probs=35.4
Q ss_pred CCCCcccccccCCcc-ceeCCCCccchhhhhcC-------CCCCcccccccc
Q 013848 387 SDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL-------DLCPICRSFIQT 430 (435)
Q Consensus 387 ~e~~~CpICl~~~~d-v~~~CGH~fC~~C~~~l-------~~CPiCR~~i~~ 430 (435)
....+|+||+..... +.+.|-|.||..|+..+ ..||+|+..++.
T Consensus 19 ~k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK 70 (684)
T KOG4362|consen 19 QKILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEK 70 (684)
T ss_pred hhhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhh
Confidence 456799999998777 56799999999998644 379999976654
No 135
>KOG2353 consensus L-type voltage-dependent Ca2+ channel, alpha2/delta subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=65.48 E-value=69 Score=38.44 Aligned_cols=147 Identities=14% Similarity=0.248 Sum_probs=93.0
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCCCCccceeeeCCCCCCCCcccccCCCCCc
Q 013848 94 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKF 173 (435)
Q Consensus 94 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~yD~D~~ip~fGFGa~~~~~~~vF~~~~~~~~ 173 (435)
-.+.|-+|-++|.. +..+| -|-..+-.+|+-+.+|..+-..-|+-.......|| .+..
T Consensus 226 KdiviLlD~SgSm~--------g~~~~----------lak~tv~~iLdtLs~~Dfvni~tf~~~~~~v~pc~----~~~l 283 (1104)
T KOG2353|consen 226 KDIVILLDVSGSMS--------GLRLD----------LAKQTVNEILDTLSDNDFVNILTFNSEVNPVSPCF----NGTL 283 (1104)
T ss_pred cceEEEEecccccc--------chhhH----------HHHHHHHHHHHhcccCCeEEEEeeccccCcccccc----cCce
Confidence 46888899999884 12333 34444555666666777777788876544433342 2334
Q ss_pred cCCHHHHHHHHHHhcCcccccCCCChHHHHHHHHHHHHhcC---------CceEEEEEEeCCcccccCCcccCccchhHH
Q 013848 174 CNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSG---------GQYHVLVIIADGQVTRSVDTEHGQLSSQEK 244 (435)
Q Consensus 174 ~~G~~gvl~~Yr~~~~~v~l~GPT~fapII~~a~~~~~~~~---------~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~ 244 (435)
+++--...+..++.+..+...|-++|.-+.+.|.+.....+ .-+.+.++||||...+ -+
T Consensus 284 vqAt~~nk~~~~~~i~~l~~k~~a~~~~~~e~aF~lL~~~n~s~~~~~~~~C~~~iml~tdG~~~~------------~~ 351 (1104)
T KOG2353|consen 284 VQATMRNKKVFKEAIETLDAKGIANYTAALEYAFSLLRDYNDSRANTQRSPCNQAIMLITDGVDEN------------AK 351 (1104)
T ss_pred eecchHHHHHHHHHHhhhccccccchhhhHHHHHHHHHHhccccccccccccceeeEEeecCCccc------------HH
Confidence 55545556666777888888899999999999988764321 1578889999999764 23
Q ss_pred HHHHHHHHh-cCCCeEEEEEecCCCCCCccc
Q 013848 245 KTVEAIVKA-SEYPLSIILVGVGDGPWDMMR 274 (435)
Q Consensus 245 ~T~~aIv~A-S~~PLSIIiVGVGd~~f~~m~ 274 (435)
+..+.-..- -..-++=.+||.+..+|+.++
T Consensus 352 ~If~~yn~~~~~Vrvftflig~~~~~~~~~~ 382 (1104)
T KOG2353|consen 352 EIFEKYNWPDKKVRVFTFLIGDEVYDLDEIQ 382 (1104)
T ss_pred HHHHhhccCCCceEEEEEEecccccccccch
Confidence 333322221 123345566777776766654
No 136
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=65.00 E-value=2.7 Score=44.25 Aligned_cols=40 Identities=28% Similarity=0.515 Sum_probs=31.1
Q ss_pred CCcccccccCCcc----ceeCCCCccchhhhhcC-------CCCCcccccc
Q 013848 389 NHVCPICLTDPKD----MAFGCGHQTCCGCGQDL-------DLCPICRSFI 428 (435)
Q Consensus 389 ~~~CpICl~~~~d----v~~~CGH~fC~~C~~~l-------~~CPiCR~~i 428 (435)
-..|||=.+...+ +.+.|||..|.+-+.++ .+||.|-...
T Consensus 334 vF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~ 384 (394)
T KOG2817|consen 334 VFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQ 384 (394)
T ss_pred eeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCccc
Confidence 4689998776554 67899999999998765 3799996543
No 137
>COG4548 NorD Nitric oxide reductase activation protein [Inorganic ion transport and metabolism]
Probab=61.41 E-value=24 Score=38.87 Aligned_cols=169 Identities=13% Similarity=0.186 Sum_probs=97.1
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCCCCccceeeeCCCCCC---CCcccccCCCC
Q 013848 95 NLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTH---DQEVFSFYPDE 171 (435)
Q Consensus 95 nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~yD~D~~ip~fGFGa~~~~---~~~vF~~~~~~ 171 (435)
-|.+-||.|.|.... ++ ...- ..--...|+..++.-++.-.+- ..+|+|-.+... -+.|-.|+.
T Consensus 448 a~TLLvD~S~St~a~----md-etrR----vidl~~eaL~~la~~~qa~gd~--~~~~~fts~rr~~vri~tvk~FDe-- 514 (637)
T COG4548 448 AFTLLVDVSASTDAK----MD-ETRR----VIDLFHEALLVLAHGHQALGDS--EDILDFTSRRRPWVRINTVKDFDE-- 514 (637)
T ss_pred eeEEEeecccchHHH----hh-hhhh----hHHHHHHHHHHhhchhhhhCCH--HHhcCchhhcCcceeeeeeecccc--
Confidence 478899999998521 11 0000 1234556666665544443322 334555443221 112222321
Q ss_pred CccCCHHHHHHHHHHhcCcccccCCCChHHHHHHHHHHHHhcCCceEEEEEEeCCcccccCCcccCccchhHHHHHHHHH
Q 013848 172 KFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIV 251 (435)
Q Consensus 172 ~~~~G~~gvl~~Yr~~~~~v~l~GPT~fapII~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~T~~aIv 251 (435)
..-.-++ -.+-.++..--|--...|++|.+..-..++.=-.||++|||...| +|--.|+. -.+.|.+|+.
T Consensus 515 s~~~~~~-------~RImALePg~ytR~G~AIR~As~kL~~rpq~qklLivlSDGkPnd-~d~YEgr~--gIeDTr~AV~ 584 (637)
T COG4548 515 SMGETVG-------PRIMALEPGYYTRDGAAIRHASAKLMERPQRQKLLIVLSDGKPND-FDHYEGRF--GIEDTREAVI 584 (637)
T ss_pred ccccccc-------hhheecCccccccccHHHHHHHHHHhcCcccceEEEEecCCCccc-cccccccc--chhhHHHHHH
Confidence 1111111 112234444457778889998877654445557889999999987 55333444 3688999999
Q ss_pred HhcCCCeEEEEEecCCCCCCcccccCCCCCccccceeeeec
Q 013848 252 KASEYPLSIILVGVGDGPWDMMREFDDNIPARAFDNFQFVN 292 (435)
Q Consensus 252 ~AS~~PLSIIiVGVGd~~f~~m~~lDd~~~~R~~DnvqFV~ 292 (435)
+|-+.-|+++-|=|-...-+.+-.+-+ .|.+-||.
T Consensus 585 eaRk~Gi~VF~Vtld~ea~~y~p~~fg------qngYa~V~ 619 (637)
T COG4548 585 EARKSGIEVFNVTLDREAISYLPALFG------QNGYAFVE 619 (637)
T ss_pred HHHhcCceEEEEEecchhhhhhHHHhc------cCceEEcc
Confidence 999999999999887765444433222 26667775
No 138
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=59.82 E-value=5.7 Score=40.33 Aligned_cols=29 Identities=28% Similarity=0.786 Sum_probs=24.9
Q ss_pred CCCcccccccCCcccee-CC----CCccchhhhh
Q 013848 388 DNHVCPICLTDPKDMAF-GC----GHQTCCGCGQ 416 (435)
Q Consensus 388 e~~~CpICl~~~~dv~~-~C----GH~fC~~C~~ 416 (435)
..+.|-+|.+...|..| .| .|.||.-|..
T Consensus 267 apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSR 300 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSR 300 (352)
T ss_pred CceeehhhhhhhccCceeecCCCcccceecccCH
Confidence 44899999999999877 78 5999999975
No 139
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=58.65 E-value=6.4 Score=29.52 Aligned_cols=38 Identities=24% Similarity=0.471 Sum_probs=17.6
Q ss_pred CcccccccCCccce-e-CCCCccchhhhh--------cCCCCCccccc
Q 013848 390 HVCPICLTDPKDMA-F-GCGHQTCCGCGQ--------DLDLCPICRSF 427 (435)
Q Consensus 390 ~~CpICl~~~~dv~-~-~CGH~fC~~C~~--------~l~~CPiCR~~ 427 (435)
+.||+.....+..+ - .|.|.-|.+=.. ..+.||+|.++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 57999998877743 3 899997763321 33689999864
No 140
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=55.15 E-value=7 Score=44.55 Aligned_cols=25 Identities=12% Similarity=0.276 Sum_probs=18.8
Q ss_pred CCCCccchhhhhcC----------CCCCccccccc
Q 013848 405 GCGHQTCCGCGQDL----------DLCPICRSFIQ 429 (435)
Q Consensus 405 ~CGH~fC~~C~~~l----------~~CPiCR~~i~ 429 (435)
.|+|.+|..|+..+ ..|+.|..-|.
T Consensus 120 ~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~ 154 (1134)
T KOG0825|consen 120 THVENQCPNCLKSCNDQLEESEKHTAHYFCEECVG 154 (1134)
T ss_pred hhhhhhhhHHHHHHHHHhhccccccccccHHHHhh
Confidence 59999999999754 25788766554
No 141
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=55.01 E-value=4 Score=43.07 Aligned_cols=21 Identities=14% Similarity=0.320 Sum_probs=15.2
Q ss_pred hcccccCCCCccceeeeCCCC
Q 013848 138 KTLSSFDEDNLIPCFGFGDAS 158 (435)
Q Consensus 138 ~vl~~yD~D~~ip~fGFGa~~ 158 (435)
.|+-.|-.|..-++|=.|..+
T Consensus 84 ~VvVEY~~D~~tDMFQIGRSt 104 (416)
T PF04710_consen 84 TVVVEYTHDPDTDMFQIGRST 104 (416)
T ss_dssp EEEEEEEEETTEEEEEEES--
T ss_pred eeeeeeecCCCcchhhhccCC
Confidence 377778888888888888754
No 142
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=52.17 E-value=15 Score=42.20 Aligned_cols=42 Identities=26% Similarity=0.500 Sum_probs=31.8
Q ss_pred CCCcccccccCCcc--cee---CCCCccchhhhhcC-----------CCCCccccccc
Q 013848 388 DNHVCPICLTDPKD--MAF---GCGHQTCCGCGQDL-----------DLCPICRSFIQ 429 (435)
Q Consensus 388 e~~~CpICl~~~~d--v~~---~CGH~fC~~C~~~l-----------~~CPiCR~~i~ 429 (435)
+..+|.||.+..+- -++ .|-|.|=..||.+| |.||.|+....
T Consensus 190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~ 247 (950)
T KOG1952|consen 190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSK 247 (950)
T ss_pred CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhc
Confidence 44789999998665 445 56699988999765 58999985444
No 143
>TIGR00578 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit (ku70). Proteins in this family are involved in non-homologous end joining, a process used for the repair of double stranded DNA breaks. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Cutoff does not detect the putative ku70 homologs in yeast.
Probab=52.12 E-value=3e+02 Score=30.67 Aligned_cols=152 Identities=13% Similarity=0.229 Sum_probs=88.3
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccc---cCCCCccceeeeCCCCCC----CCccccc
Q 013848 95 NLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSS---FDEDNLIPCFGFGDASTH----DQEVFSF 167 (435)
Q Consensus 95 nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~---yD~D~~ip~fGFGa~~~~----~~~vF~~ 167 (435)
-+++.||.|.|+-.. . .. .+...+.+.|++.|-.+++. +.+.-+|-++-||...+. ..+|+-+
T Consensus 12 ailflIDvs~sM~~~---~---~~----~~~~s~~~~al~~i~~l~q~kIis~~~D~vGivlfgT~~t~n~~~~~~i~v~ 81 (584)
T TIGR00578 12 SLIFLVDASKAMFEE---S---QG----EDELTPFDMSIQCIQSVYTSKIISSDKDLLAVVFYGTEKDKNSVNFKNIYVL 81 (584)
T ss_pred EEEEEEECCHHHcCC---C---cC----cCcCChHHHHHHHHHHHHHhcCCCCCCCeEEEEEEeccCCCCccCCCceEEE
Confidence 599999999998521 0 01 11357888888888776653 455669999999987654 2355444
Q ss_pred CC-CCCccCCHHHHHHHHHHhcCc---------ccccCCCChHHHHHHHHHHHHhcCCce--EEEEEEeCCcccccCCcc
Q 013848 168 YP-DEKFCNGFEEVLRRYRELVPH---------LRLAGPTSFAPIIEMAITIVEHSGGQY--HVLVIIADGQVTRSVDTE 235 (435)
Q Consensus 168 ~~-~~~~~~G~~gvl~~Yr~~~~~---------v~l~GPT~fapII~~a~~~~~~~~~~Y--~VLlIiTDG~i~d~~d~~ 235 (435)
++ +.| +++.|.+. +..... ...+...+++.++-.++++....+.+| -=+++|||-+ .+
T Consensus 82 ~~L~~p---~a~~i~~L-~~l~~~~~~~~~~~~~~~~~~~~l~daL~~~~~~f~~~~~k~~~kRI~lfTd~D------~P 151 (584)
T TIGR00578 82 QELDNP---GAKRILEL-DQFKGDQGPKKFRDTYGHGSDYSLSEVLWVCANLFSDVQFRMSHKRIMLFTNED------NP 151 (584)
T ss_pred eeCCCC---CHHHHHHH-HHHhhccCccchhhccCCCCCCcHHHHHHHHHHHHHhcchhhcCcEEEEECCCC------CC
Confidence 43 333 33333221 111111 111122478999988888876432232 2357888743 33
Q ss_pred cCccchhHHHHHHHHHHhcCCCeEEEEEecC
Q 013848 236 HGQLSSQEKKTVEAIVKASEYPLSIILVGVG 266 (435)
Q Consensus 236 ~~~~~~~~~~T~~aIv~AS~~PLSIIiVGVG 266 (435)
|+.=+.....+..-+.+..++-+.|-++-+.
T Consensus 152 ~~~~~~~~~~a~~~a~dl~~~gi~ielf~l~ 182 (584)
T TIGR00578 152 HGNDSAKASRARTKAGDLRDTGIFLDLMHLK 182 (584)
T ss_pred CCCchhHHHHHHHHHHHHHhcCeEEEEEecC
Confidence 3332222344444566777889999888775
No 144
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=49.71 E-value=3.1 Score=33.71 Aligned_cols=37 Identities=30% Similarity=0.806 Sum_probs=17.1
Q ss_pred CcccccccCCccceeCCCCccchhhhhcCC---CCCccccccc
Q 013848 390 HVCPICLTDPKDMAFGCGHQTCCGCGQDLD---LCPICRSFIQ 429 (435)
Q Consensus 390 ~~CpICl~~~~dv~~~CGH~fC~~C~~~l~---~CPiCR~~i~ 429 (435)
..||.|........ ||..|..|..... .||-|.++++
T Consensus 2 ~~CP~C~~~L~~~~---~~~~C~~C~~~~~~~a~CPdC~~~Le 41 (70)
T PF07191_consen 2 NTCPKCQQELEWQG---GHYHCEACQKDYKKEAFCPDCGQPLE 41 (70)
T ss_dssp -B-SSS-SBEEEET---TEEEETTT--EEEEEEE-TTT-SB-E
T ss_pred CcCCCCCCccEEeC---CEEECccccccceecccCCCcccHHH
Confidence 57999987533321 5666666765442 5777766654
No 145
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=47.66 E-value=12 Score=38.46 Aligned_cols=44 Identities=7% Similarity=-0.069 Sum_probs=32.6
Q ss_pred CCcccccccCCcccee-CCCCc-cchhhhhcC--CCCCcccccccccc
Q 013848 389 NHVCPICLTDPKDMAF-GCGHQ-TCCGCGQDL--DLCPICRSFIQTRI 432 (435)
Q Consensus 389 ~~~CpICl~~~~dv~~-~CGH~-fC~~C~~~l--~~CPiCR~~i~~~i 432 (435)
.++|-+|-+.....++ +|+|+ ||.+|+..- ..||.|.......+
T Consensus 343 ~~~~~~~~~~~~st~~~~~~~n~~~~~~a~~s~~~~~~~c~~~~~~~~ 390 (394)
T KOG2113|consen 343 SLKGTSAGFGLLSTIWSGGNMNLSPGSLASASASPTSSTCDHNDHTLV 390 (394)
T ss_pred hcccccccCceeeeEeecCCcccChhhhhhcccCCccccccccceeee
Confidence 4689999887766554 99999 888999743 48999976544333
No 146
>PF04811 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: IPR006896 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger (IPR006895 from INTERPRO), an alpha/beta trunk domain, an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes the Sec23/24 alpha/beta trunk domain, which is formed from a single, approximately 250-residue segment plugged into the beta-barrel between strands beta-1 and beta-19. The trunk has an alpha/beta fold with a vWA topology, and it forms the dimer interface, primarily involving strand beta-14 on Sec23 and Sec24; in addition, the trunk domain of Sec23 contacts Sar1.; GO: 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EGD_A 2NUP_A 3EG9_A 3EFO_A 3EGX_A 2NUT_A 1PD0_A 1PD1_A 1M2V_B 1PCX_A ....
Probab=47.65 E-value=2.6e+02 Score=26.82 Aligned_cols=154 Identities=18% Similarity=0.292 Sum_probs=80.5
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccC--CCCccceeeeCCCCC-----C--C----
Q 013848 95 NLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFD--EDNLIPCFGFGDAST-----H--D---- 161 (435)
Q Consensus 95 nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~yD--~D~~ip~fGFGa~~~-----~--~---- 161 (435)
.+++.||.|...- ..+..+.++++|-.+|.... ++-+|-+..|+...+ . .
T Consensus 5 ~y~FvID~s~~av-----------------~~g~~~~~~~sl~~~l~~l~~~~~~~vgiitfd~~V~~y~l~~~~~~~~~ 67 (243)
T PF04811_consen 5 VYVFVIDVSYEAV-----------------QSGLLQSLIESLKSALDSLPGDERTRVGIITFDSSVHFYNLSSSLSQPQM 67 (243)
T ss_dssp EEEEEEE-SHHHH-----------------HHTHHHHHHHHHHHHGCTSSTSTT-EEEEEEESSSEEEEETTTTSSSTEE
T ss_pred EEEEEEECchhhh-----------------hccHHHHHHHHHHHHHHhccCCCCcEEEEEEeCCEEEEEECCCCcCCCcc
Confidence 4788899885421 13677888888888888888 888899999987542 0 0
Q ss_pred ------CcccccCCCC-----Ccc-CCHHHHHHHHHHhcCcc-cccCCCChHHHHHHHHHHHH--hcCCceEEEEEEeCC
Q 013848 162 ------QEVFSFYPDE-----KFC-NGFEEVLRRYRELVPHL-RLAGPTSFAPIIEMAITIVE--HSGGQYHVLVIIADG 226 (435)
Q Consensus 162 ------~~vF~~~~~~-----~~~-~G~~gvl~~Yr~~~~~v-~l~GPT~fapII~~a~~~~~--~~~~~Y~VLlIiTDG 226 (435)
.+.|.-.+++ .+| .-++++|+.-.+..+.. .-....++...|+.|..+.+ ..+| .|+++. .|
T Consensus 68 ~v~~dl~~~~~p~~~~llv~~~e~~~~i~~ll~~L~~~~~~~~~~~~~~c~G~Al~~A~~ll~~~~~gG--kI~~F~-s~ 144 (243)
T PF04811_consen 68 IVVSDLDDPFIPLPDGLLVPLSECRDAIEELLESLPSIFPETAGKRPERCLGSALSAALSLLSSRNTGG--KILVFT-SG 144 (243)
T ss_dssp EEEHHTTSHHSSTSSSSSEETTTCHHHHHHHHHHHHHHSTT-TTB-----HHHHHHHHHHHHHHHTS-E--EEEEEE-SS
T ss_pred cchHHHhhcccCCcccEEEEhHHhHHHHHHHHHHhhhhcccccccCccccHHHHHHHHHHHHhccccCC--EEEEEe-cc
Confidence 0111111111 111 23566666655544443 13345899999999999988 5555 455554 43
Q ss_pred ccc--------ccCCcccCc--------cchhHHHHHHHHHHhcCCCeEEEEEecCCC
Q 013848 227 QVT--------RSVDTEHGQ--------LSSQEKKTVEAIVKASEYPLSIILVGVGDG 268 (435)
Q Consensus 227 ~i~--------d~~d~~~~~--------~~~~~~~T~~aIv~AS~~PLSIIiVGVGd~ 268 (435)
..+ ...+..+.. +.++.+--.+.-.+++..-+++=+...+..
T Consensus 145 ~pt~G~Gg~l~~~~~~~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvDlf~~~~~ 202 (243)
T PF04811_consen 145 PPTYGPGGSLKKREDSSHYDTEKEKALLLPPANEFYKKLAEECSKQGISVDLFVFSSD 202 (243)
T ss_dssp ---SSSTTSS-SBTTSCCCCHCTTHHCHSHSSSHHHHHHHHHHHHCTEEEEEEEECSS
T ss_pred CCCCCCCceecccccccccccccchhhhccccchHHHHHHHHHHhcCCEEEEEeecCC
Confidence 332 111110000 111111234445557788888877777764
No 147
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.13 E-value=6.2 Score=40.23 Aligned_cols=25 Identities=28% Similarity=0.699 Sum_probs=18.2
Q ss_pred CCCccchhhhhcC-----------------CCCCcccccccc
Q 013848 406 CGHQTCCGCGQDL-----------------DLCPICRSFIQT 430 (435)
Q Consensus 406 CGH~fC~~C~~~l-----------------~~CPiCR~~i~~ 430 (435)
|.-..|.+|+.++ ..||+||+.+.-
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci 366 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCI 366 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEE
Confidence 5566778888543 279999998764
No 148
>TIGR01651 CobT cobaltochelatase, CobT subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=46.95 E-value=47 Score=37.10 Aligned_cols=60 Identities=20% Similarity=0.376 Sum_probs=34.8
Q ss_pred HHHHHHHHHhcCCceEEEEEEeCCcccccCCcc-----cCccchhHHHHHHHHHHhcCC-CeEEEEEecCC
Q 013848 203 IEMAITIVEHSGGQYHVLVIIADGQVTRSVDTE-----HGQLSSQEKKTVEAIVKASEY-PLSIILVGVGD 267 (435)
Q Consensus 203 I~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~d~~-----~~~~~~~~~~T~~aIv~AS~~-PLSIIiVGVGd 267 (435)
|..|.+...+...+=-|||+|+||...| |-+ .+-|-.++++.|. ..... ++=++-||||.
T Consensus 502 l~wa~~rL~~R~e~rKiL~ViSDG~P~D--~~TlsvN~~~~l~~hLr~vi~---~~e~~~~vel~aigIg~ 567 (600)
T TIGR01651 502 LMWAHQRLIARPEQRRILMMISDGAPVD--DSTLSVNPGNYLERHLRAVIE---EIETRSPVELLAIGIGH 567 (600)
T ss_pred HHHHHHHHhcCcccceEEEEEeCCCcCC--ccccccCchhHHHHHHHHHHH---HHhccCCceEEEeeccc
Confidence 3434333333344568999999999986 211 2233333444433 34443 78888888886
No 149
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=46.60 E-value=9.1 Score=40.33 Aligned_cols=28 Identities=36% Similarity=0.948 Sum_probs=20.9
Q ss_pred CCcccccc-cCCcc-c---eeCCCCccchhhhh
Q 013848 389 NHVCPICL-TDPKD-M---AFGCGHQTCCGCGQ 416 (435)
Q Consensus 389 ~~~CpICl-~~~~d-v---~~~CGH~fC~~C~~ 416 (435)
...|.||. +.... . +..|+|.||.+|..
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k 178 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVK 178 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhH
Confidence 46899999 44333 2 23799999999997
No 150
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=45.50 E-value=16 Score=27.83 Aligned_cols=21 Identities=33% Similarity=0.920 Sum_probs=13.2
Q ss_pred CCCCccchhhhh----cCCCCCccc
Q 013848 405 GCGHQTCCGCGQ----DLDLCPICR 425 (435)
Q Consensus 405 ~CGH~fC~~C~~----~l~~CPiCR 425 (435)
.|++.||.+|-. .+..||-|-
T Consensus 26 ~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 26 KCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp TTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CCCCccccCcChhhhccccCCcCCC
Confidence 688999999974 566899984
No 151
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=44.17 E-value=1.5e+02 Score=28.55 Aligned_cols=97 Identities=26% Similarity=0.421 Sum_probs=56.3
Q ss_pred cHHHHHHHHHhcCCceeceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCCCCccceeeeCCC
Q 013848 78 SLEQVTDALARAGLESSNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDA 157 (435)
Q Consensus 78 ~ld~v~~al~~~Gl~~~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~yD~D~~ip~fGFGa~ 157 (435)
++++| ++|..+|.+ |||+|-|.... |.+|+ +.-+.|+ +.| ++-++|
T Consensus 53 T~~ev-~~l~~aGad----IIAlDaT~R~R--------p~~l~-------~li~~i~------~~~-------~l~MAD- 98 (192)
T PF04131_consen 53 TLKEV-DALAEAGAD----IIALDATDRPR--------PETLE-------ELIREIK------EKY-------QLVMAD- 98 (192)
T ss_dssp SHHHH-HHHHHCT-S----EEEEE-SSSS---------SS-HH-------HHHHHHH------HCT-------SEEEEE-
T ss_pred CHHHH-HHHHHcCCC----EEEEecCCCCC--------CcCHH-------HHHHHHH------HhC-------cEEeee-
Confidence 67777 678899999 59999997652 23444 2222222 222 333433
Q ss_pred CCCCCcccccCCCCCccCCHHHHHHHHHHhcCcc--cccCCCChH----HHHHHHHHHHHhcCCceEEEEEEeCCcccc
Q 013848 158 STHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHL--RLAGPTSFA----PIIEMAITIVEHSGGQYHVLVIIADGQVTR 230 (435)
Q Consensus 158 ~~~~~~vF~~~~~~~~~~G~~gvl~~Yr~~~~~v--~l~GPT~fa----pII~~a~~~~~~~~~~Y~VLlIiTDG~i~d 230 (435)
|..+|+.+++.+--+--| .|+|-|... |=++.+.++++.. . -+|..|.|..
T Consensus 99 ----------------ist~ee~~~A~~~G~D~I~TTLsGYT~~t~~~~pD~~lv~~l~~~~--~----pvIaEGri~t 155 (192)
T PF04131_consen 99 ----------------ISTLEEAINAAELGFDIIGTTLSGYTPYTKGDGPDFELVRELVQAD--V----PVIAEGRIHT 155 (192)
T ss_dssp -----------------SSHHHHHHHHHTT-SEEE-TTTTSSTTSTTSSHHHHHHHHHHHTT--S----EEEEESS--S
T ss_pred ----------------cCCHHHHHHHHHcCCCEEEcccccCCCCCCCCCCCHHHHHHHHhCC--C----cEeecCCCCC
Confidence 567788888877655433 478876655 7677777777652 1 2889999985
No 152
>PF00113 Enolase_C: Enolase, C-terminal TIM barrel domain; InterPro: IPR020810 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ]. In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3TQP_B 2PU1_A 1OEP_A 2PA6_A 1PDY_A 1PDZ_A 3UJ2_E ....
Probab=44.15 E-value=1.2e+02 Score=31.09 Aligned_cols=156 Identities=17% Similarity=0.277 Sum_probs=74.9
Q ss_pred cccccccHHHHHHHHHhcCCceeceEEEEecCCCCCC---CCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCCCCc
Q 013848 72 IDDNYHSLEQVTDALARAGLESSNLIVGIDFTKSNEW---TGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNL 148 (435)
Q Consensus 72 i~~~y~~ld~v~~al~~~Gl~~~nlivaIDFT~SN~~---~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~yD~D~~ 148 (435)
+.++..-||.|.+|++.+|++- ++.+|||+.+|--+ .|+--+..++...-....=.=++-|.-..+++..
T Consensus 76 ~~~~eeaL~ll~~Ai~~aGy~~-~v~ialD~AAsefyd~~~gkY~~~~~~~~~~~~~~~s~delid~y~~li~~------ 148 (295)
T PF00113_consen 76 IDDNEEALDLLMEAIKEAGYEP-DVAIALDVAASEFYDEEDGKYDLEFKSKEKDPSRYKSSDELIDYYKDLIKK------ 148 (295)
T ss_dssp BSSHHHHHHHHHHHHHHTT-TT-TBEEEEE--GGGGEETETTEEETTTTSSSSTGGGEEEHHHHHHHHHHHHHH------
T ss_pred CcchhHHHHHHHHHHHHccccc-eeeeeccccHHHhhhccCCeEEEeecccccccccccCHHHHHHHHHHHHHh------
Confidence 3444566889999999999995 99999999999754 2221111111000000000112333333444433
Q ss_pred cceeeeCCCCCCCCcccccCCCCCccCCHHHHHHHHHHhcCcccccCCCChHHHHHHHHHHHHhcCCceEEEEEEeCCcc
Q 013848 149 IPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSGGQYHVLVIIADGQV 228 (435)
Q Consensus 149 ip~fGFGa~~~~~~~vF~~~~~~~~~~G~~gvl~~Yr~~~~~v~l~GPT~fapII~~a~~~~~~~~~~Y~VLlIiTDG~i 228 (435)
+|+...-|. |.. ++.+++.+.=.+.-.++++-|=..|.--.+.+.+-+++.... . ++|-=.||
T Consensus 149 YPIvsIEDp---------f~e-----dD~e~w~~lt~~~g~~~~iVGDDl~vTn~~ri~~~i~~~~~n-a--~llK~NQi 211 (295)
T PF00113_consen 149 YPIVSIEDP---------FDE-----DDWEGWAKLTKRLGDKIQIVGDDLFVTNPKRIKKGIEKKACN-A--LLLKPNQI 211 (295)
T ss_dssp S-EEEEESS---------S-T-----T-HHHHHHHHHHHTTTSEEEESTTTTT-HHHHHHHHHCT--S-E--EEE-HHHH
T ss_pred cCeEEEEcc---------ccc-----cchHHHHHHHHhhhcceeeecccccccchhhhhccchhhhcc-c--hhhhhhhh
Confidence 344444331 211 245555555444445788877655543333333223322111 2 33433444
Q ss_pred cccCCcccCccchhHHHHHHHHHHhcCCCeEEEEE
Q 013848 229 TRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILV 263 (435)
Q Consensus 229 ~d~~d~~~~~~~~~~~~T~~aIv~AS~~PLSIIiV 263 (435)
.- .-+|++++..|...-..+|+=
T Consensus 212 gT------------vte~lea~~~a~~~g~~~vvS 234 (295)
T PF00113_consen 212 GT------------VTETLEAVKLAKSAGWGVVVS 234 (295)
T ss_dssp SS------------HHHHHHHHHHHHHTT-EEEEE
T ss_pred HH------------HHHHHHHHHHHHHCCceeecc
Confidence 32 457899999888877776663
No 153
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=43.35 E-value=47 Score=32.64 Aligned_cols=55 Identities=22% Similarity=0.350 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhcCCceEEEEEEeCCcccccCCcccCccchhHHHHHHHHHHhcCCC---eEEEEEecC
Q 013848 201 PIIEMAITIVEHSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYP---LSIILVGVG 266 (435)
Q Consensus 201 pII~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~T~~aIv~AS~~P---LSIIiVGVG 266 (435)
|++..+++.++++++.-|++=+++||.|+- ..+.....|.-|.+.- +.|-.+.=|
T Consensus 14 ~~l~~~~~~~k~~~~~lHl~GLlSdGGVHS-----------h~~Hl~al~~~a~~~gv~~V~vH~f~DG 71 (223)
T PF06415_consen 14 PVLLEAIEHAKKNGGRLHLMGLLSDGGVHS-----------HIDHLFALIKLAKKQGVKKVYVHAFTDG 71 (223)
T ss_dssp HHHHHHHHHHCCTT--EEEEEEESS-SSS-------------HHHHHHHHHHHHHTT-SEEEEEEEE-S
T ss_pred HHHHHHHHHHHhcCCeEEEEEEecCCCccc-----------cHHHHHHHHHHHHHcCCCEEEEEEecCC
Confidence 788999999999888999999999999985 3455555555555544 445554444
No 154
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=42.80 E-value=17 Score=33.94 Aligned_cols=43 Identities=19% Similarity=0.386 Sum_probs=30.3
Q ss_pred CCCCcccccccCCccceeCCCCc-----cchhhhhcC------CCCCccccccc
Q 013848 387 SDNHVCPICLTDPKDMAFGCGHQ-----TCCGCGQDL------DLCPICRSFIQ 429 (435)
Q Consensus 387 ~e~~~CpICl~~~~dv~~~CGH~-----fC~~C~~~l------~~CPiCR~~i~ 429 (435)
..+..|-||.+...+...||... .-.+|+++| ..|++|+.+..
T Consensus 6 ~~~~~CRIC~~~~~~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 6 LMDKCCWICKDEYDVVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCCeeEecCCCCCCccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 45679999998765544466543 244899876 37999998764
No 155
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=41.45 E-value=19 Score=37.17 Aligned_cols=41 Identities=34% Similarity=0.802 Sum_probs=30.4
Q ss_pred CcccccccCC--cc-cee--CCCCccchhhhhcC----CCCCcccccccc
Q 013848 390 HVCPICLTDP--KD-MAF--GCGHQTCCGCGQDL----DLCPICRSFIQT 430 (435)
Q Consensus 390 ~~CpICl~~~--~d-v~~--~CGH~fC~~C~~~l----~~CPiCR~~i~~ 430 (435)
..|++|.+.. .+ ..+ +||+..|..|.... ..||.||.+...
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~~ 299 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYER 299 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCcccc
Confidence 4789998854 22 333 78999999998765 389999987654
No 156
>KOG4465 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.96 E-value=2.6e+02 Score=29.76 Aligned_cols=140 Identities=18% Similarity=0.290 Sum_probs=85.3
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCCCCccceeeeCCCCCCCCcccccCCCCCcc
Q 013848 95 NLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKFC 174 (435)
Q Consensus 95 nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~yD~D~~ip~fGFGa~~~~~~~vF~~~~~~~~~ 174 (435)
++.+|+|.++|+.. +-|-. -.|--+.|--. .|-..-.....-|..|-+..+.. +|.-|
T Consensus 429 r~~laldvs~sm~~--------rv~~s---~ln~reaaa~m---~linlhnead~~~vaf~d~lte~----pftkd---- 486 (598)
T KOG4465|consen 429 RFCLALDVSASMNQ--------RVLGS---ILNAREAAAAM---CLINLHNEADSRCVAFCDELTEC----PFTKD---- 486 (598)
T ss_pred eEEEEEecchhhhh--------hhhcc---ccchHHHHhhh---heeeeccccceeEEEeccccccC----CCccc----
Confidence 69999999999841 22221 24554444322 22233334456677787765421 22111
Q ss_pred CCHHHHHHHHHHhcCcccccCCCChHHHHHHHHHHHHhcCCceEEEEEEeCCcccccCCcccCccchhHHHHHHHHHHhc
Q 013848 175 NGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKAS 254 (435)
Q Consensus 175 ~G~~gvl~~Yr~~~~~v~l~GPT~fapII~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~T~~aIv~AS 254 (435)
--+..|+++ +.++..+|..+=-|+| .+++++.++-|.+|+||.+.- -|..-| -+.++.-.+|+
T Consensus 487 ~kigqv~~~----~nni~~g~tdcglpm~-----wa~ennlk~dvfii~tdndt~------ageihp--~~aik~yrea~ 549 (598)
T KOG4465|consen 487 MKIGQVLDA----MNNIDAGGTDCGLPMI-----WAQENNLKADVFIIFTDNDTF------AGEIHP--AEAIKEYREAM 549 (598)
T ss_pred ccHHHHHHH----HhcCCCCCCccCCcee-----ehhhcCCCccEEEEEecCccc------ccccCH--HHHHHHHHHhc
Confidence 136677775 3345566655555554 356777889999999995432 233333 67788888999
Q ss_pred CCC-eEEEEEecCCCCCCcc
Q 013848 255 EYP-LSIILVGVGDGPWDMM 273 (435)
Q Consensus 255 ~~P-LSIIiVGVGd~~f~~m 273 (435)
..| --+|+.|+-..+|..-
T Consensus 550 ~i~dakliv~amqa~d~sia 569 (598)
T KOG4465|consen 550 DIHDAKLIVCAMQANDFSIA 569 (598)
T ss_pred CCCcceEEEEEeecCCceec
Confidence 999 6678888888787654
No 157
>PLN00191 enolase
Probab=39.93 E-value=2.4e+02 Score=30.61 Aligned_cols=70 Identities=20% Similarity=0.420 Sum_probs=43.1
Q ss_pred cccccHHHHHHHHHhcCCceeceEEEEecCCCCCCCCCCCCCC--CCcccCCCCCCHHHHHHHHHhhcccccC
Q 013848 74 DNYHSLEQVTDALARAGLESSNLIVGIDFTKSNEWTGARSFQR--RSLHHIGDDQNPYEQAISIIGKTLSSFD 144 (435)
Q Consensus 74 ~~y~~ld~v~~al~~~Gl~~~nlivaIDFT~SN~~~g~~~~~~--~SLH~i~~~~N~Yq~AI~~Ig~vl~~yD 144 (435)
++-.-|+.|.+|+.++|++ -++.+|||+-+|--|..+..|.= ++-..-+...-..+++|+.+-.+++.|+
T Consensus 241 ~~~eal~ll~eAi~~ag~~-~~i~i~lD~Aase~~~~~~~Y~~~~~~~~~~~~~~~s~~e~i~~~~~L~~~y~ 312 (457)
T PLN00191 241 DNKEGLELLKEAIEKAGYT-GKIKIGMDVAASEFYTKDKKYDLDFKEENNDGSNKKSGDELIDLYKEFVSDYP 312 (457)
T ss_pred CHHHHHHHHHHHHHHcCCC-CceEEEeehhhhhhcccCCceEeeccccCCCcccccCHHHHHHHHHHHhhcCC
Confidence 3445578899999999999 58999999999854310001210 0000000112366888888888876665
No 158
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=37.35 E-value=1.4e+02 Score=31.28 Aligned_cols=145 Identities=16% Similarity=0.255 Sum_probs=79.9
Q ss_pred hcCCceeceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCCCCccceeeeCCCCCCCCccccc
Q 013848 88 RAGLESSNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSF 167 (435)
Q Consensus 88 ~~Gl~~~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~yD~D~~ip~fGFGa~~~~~~~vF~~ 167 (435)
+.|+= -.|+|.||+|.+++.. -+| +|-.-.+|+.+-..+..|=+.|-|--.||=.......+...-
T Consensus 56 r~Gii-Rhl~iviD~S~am~e~--------Df~-----P~r~a~~~K~le~Fv~eFFdQNPiSQigii~~k~g~A~~lt~ 121 (378)
T KOG2807|consen 56 RKGII-RHLYIVIDCSRAMEEK--------DFR-----PSRFANVIKYLEGFVPEFFDQNPISQIGIISIKDGKADRLTD 121 (378)
T ss_pred hhhhh-eeEEEEEEhhhhhhhc--------cCC-----chHHHHHHHHHHHHHHHHhccCchhheeEEEEecchhhHHHH
Confidence 44555 3899999999998642 233 788888888887766666667777777763211111111110
Q ss_pred CCCCCccCCHHHHHHHHHHhcCccc-ccCCCChHHHHHHHHHHHHhcCC--ceEEEEEEeCCcccccCCcccCccchhHH
Q 013848 168 YPDEKFCNGFEEVLRRYRELVPHLR-LAGPTSFAPIIEMAITIVEHSGG--QYHVLVIIADGQVTRSVDTEHGQLSSQEK 244 (435)
Q Consensus 168 ~~~~~~~~G~~gvl~~Yr~~~~~v~-l~GPT~fapII~~a~~~~~~~~~--~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~ 244 (435)
...| .+--++ ++..+. -+|--+.--.++.|++..+...+ .=-||+|+.-=...|-. |.-
T Consensus 122 ltgn-----p~~hI~----aL~~~~~~~g~fSLqNaLe~a~~~Lk~~p~H~sREVLii~sslsT~DPg---------di~ 183 (378)
T KOG2807|consen 122 LTGN-----PRIHIH----ALKGLTECSGDFSLQNALELAREVLKHMPGHVSREVLIIFSSLSTCDPG---------DIY 183 (378)
T ss_pred hcCC-----HHHHHH----HHhcccccCCChHHHHHHHHHHHHhcCCCcccceEEEEEEeeecccCcc---------cHH
Confidence 0111 122222 233332 34433444445555555554433 23588888654444422 478
Q ss_pred HHHHHHHHhcCCCeEEEEEecCC
Q 013848 245 KTVEAIVKASEYPLSIILVGVGD 267 (435)
Q Consensus 245 ~T~~aIv~AS~~PLSIIiVGVGd 267 (435)
+||+.++.+ + |=+-+||+-.
T Consensus 184 ~tI~~lk~~-k--IRvsvIgLsa 203 (378)
T KOG2807|consen 184 ETIDKLKAY-K--IRVSVIGLSA 203 (378)
T ss_pred HHHHHHHhh-C--eEEEEEeech
Confidence 999999854 3 4445566644
No 159
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=37.17 E-value=3.4e+02 Score=28.75 Aligned_cols=65 Identities=15% Similarity=0.260 Sum_probs=42.4
Q ss_pred cccccHHHHHHHHHhcCCce-eceEEEEecCCCCCCCCCCCCCCCCccc--CCCCCCHHHHHHHHHhhcccccC
Q 013848 74 DNYHSLEQVTDALARAGLES-SNLIVGIDFTKSNEWTGARSFQRRSLHH--IGDDQNPYEQAISIIGKTLSSFD 144 (435)
Q Consensus 74 ~~y~~ld~v~~al~~~Gl~~-~nlivaIDFT~SN~~~g~~~~~~~SLH~--i~~~~N~Yq~AI~~Ig~vl~~yD 144 (435)
++-.-|+.|.+|++++|++- -++.++||+-+|--|.. ..-++ ..+..-.-++||+.+.++++.|+
T Consensus 211 ~d~~~l~~i~eAi~~~g~~~G~dv~i~lD~aas~~~~~------~~y~~~~~~~~~~t~~eai~~~~~l~e~~~ 278 (408)
T cd03313 211 SNEEALDLLVEAIEKAGYEPGKKIAIALDVAASEFYDE------GKYVYDSDEGKKLTSEELIDYYKELVKKYP 278 (408)
T ss_pred ChHHHHHHHHHHHHHhcCCCCCeEEEEEehhhhhhccc------CcceeccCCCcccCHHHHHHHHHHHHHhCC
Confidence 34444677999999999982 27999999988753311 11111 11222345888888888888776
No 160
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=37.13 E-value=35 Score=33.79 Aligned_cols=70 Identities=30% Similarity=0.463 Sum_probs=46.7
Q ss_pred HHHHHHHHHhcCcccccCCCChHHHHH-----------HHHHHH---HhcCCceEEEEEEeCCcccccCCcccCccchhH
Q 013848 178 EEVLRRYRELVPHLRLAGPTSFAPIIE-----------MAITIV---EHSGGQYHVLVIIADGQVTRSVDTEHGQLSSQE 243 (435)
Q Consensus 178 ~gvl~~Yr~~~~~v~l~GPT~fapII~-----------~a~~~~---~~~~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~ 243 (435)
++-|++|++.-.+++-..-..+-|-|+ -+..++ +-.+..|+|.+|+-||+.. |
T Consensus 89 ~eeL~~~~~~~srL~~Hp~~~~~pgve~stGSLGqGLsvavGmAlg~kl~~~~~~VyvilGDGEl~-------------E 155 (243)
T COG3959 89 EEELETFRRIGSRLPGHPERNKTPGVEVSTGSLGQGLSVAVGMALGAKLKGSPYRVYVILGDGELD-------------E 155 (243)
T ss_pred HHHHHHhccCCCcCCCCCccCCCCceeecCCcccccchHHHHHHHHHhhcCCCceEEEEecCcccc-------------c
Confidence 456667777655554433333444433 222332 3345689999999999986 6
Q ss_pred HHHHHHHHHhcCCCeEE
Q 013848 244 KKTVEAIVKASEYPLSI 260 (435)
Q Consensus 244 ~~T~~aIv~AS~~PLSI 260 (435)
-++-+|+..|+++-|.=
T Consensus 156 G~~WEAam~Aah~~L~N 172 (243)
T COG3959 156 GQVWEAAMTAAHYKLDN 172 (243)
T ss_pred ccHHHHHHHHHHhccCc
Confidence 78899999999988863
No 161
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.72 E-value=12 Score=34.22 Aligned_cols=39 Identities=38% Similarity=0.952 Sum_probs=24.3
Q ss_pred CCCCcccccccCCccceeCCCCc-------cchhhhhcC--------CCCCccccc
Q 013848 387 SDNHVCPICLTDPKDMAFGCGHQ-------TCCGCGQDL--------DLCPICRSF 427 (435)
Q Consensus 387 ~e~~~CpICl~~~~dv~~~CGH~-------fC~~C~~~l--------~~CPiCR~~ 427 (435)
.++.+|-||+... -+=.|||. ||..|+-+. +.|-.||..
T Consensus 63 ~ddatC~IC~KTK--FADG~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~ 116 (169)
T KOG3799|consen 63 GDDATCGICHKTK--FADGCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQ 116 (169)
T ss_pred CcCcchhhhhhcc--cccccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHH
Confidence 4677999998521 11267776 344665432 478888864
No 162
>COG1488 PncB Nicotinic acid phosphoribosyltransferase [Coenzyme metabolism]
Probab=36.19 E-value=1.3e+02 Score=32.15 Aligned_cols=62 Identities=21% Similarity=0.234 Sum_probs=41.8
Q ss_pred cCcccccCCCChHHHHHHHHHHHHhcCCceEEEEEEeCCcccccCCcccCccchhHHHHHHHHHHhcCCCeEEEEEecCC
Q 013848 188 VPHLRLAGPTSFAPIIEMAITIVEHSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGD 267 (435)
Q Consensus 188 ~~~v~l~GPT~fapII~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~T~~aIv~AS~~PLSIIiVGVGd 267 (435)
+-.|++.. -++.-+++++.+..++.|-.- +.+|++||..+ +.++..+. +...+ +..-|||.
T Consensus 264 ~~GVR~DS-Gd~~~~~~kvr~~ld~~G~~~-~~Ii~Sdg~ld--------------e~~i~~l~-~~g~~--~d~FGvGT 324 (405)
T COG1488 264 LDGVRLDS-GDPRELSEKVRAHLDKLGYDP-VKIIVSDGLLD--------------EKIIALLR-AFGAR--NDAFGVGT 324 (405)
T ss_pred ceEEECCC-CCHHHHHHHHHHHHHHcCCCc-eEEEEeCCcch--------------HHHHHHHH-HhCCC--ccEeccch
Confidence 44455533 577777888877777776443 88999999864 34444444 46666 88889985
Q ss_pred C
Q 013848 268 G 268 (435)
Q Consensus 268 ~ 268 (435)
.
T Consensus 325 ~ 325 (405)
T COG1488 325 N 325 (405)
T ss_pred h
Confidence 3
No 163
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=36.07 E-value=99 Score=31.15 Aligned_cols=15 Identities=20% Similarity=0.414 Sum_probs=6.8
Q ss_pred CHHHHHHHHHHhcCc
Q 013848 176 GFEEVLRRYRELVPH 190 (435)
Q Consensus 176 G~~gvl~~Yr~~~~~ 190 (435)
|+.+++..-++..|.
T Consensus 27 a~~D~~~~~~~r~~~ 41 (319)
T PF02601_consen 27 AIQDFLRTLKRRNPI 41 (319)
T ss_pred HHHHHHHHHHHhCCC
Confidence 444554444444443
No 164
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.30 E-value=15 Score=42.45 Aligned_cols=31 Identities=23% Similarity=0.340 Sum_probs=24.7
Q ss_pred CCCCCcccccccCCcc---ceeCCCCccchhhhh
Q 013848 386 TSDNHVCPICLTDPKD---MAFGCGHQTCCGCGQ 416 (435)
Q Consensus 386 l~e~~~CpICl~~~~d---v~~~CGH~fC~~C~~ 416 (435)
++-+..|-+|....-. ++|+|||.|-.+|+.
T Consensus 814 ~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~ 847 (911)
T KOG2034|consen 814 LEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLI 847 (911)
T ss_pred ecCccchHHhcchhhcCcceeeeccchHHHHHHH
Confidence 3456799999876543 778999999999985
No 165
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=34.53 E-value=9.9 Score=38.15 Aligned_cols=44 Identities=27% Similarity=0.690 Sum_probs=20.6
Q ss_pred CCCcccccccCCcccee-CC---C--CccchhhhhcCC----CCCccccccccc
Q 013848 388 DNHVCPICLTDPKDMAF-GC---G--HQTCCGCGQDLD----LCPICRSFIQTR 431 (435)
Q Consensus 388 e~~~CpICl~~~~dv~~-~C---G--H~fC~~C~~~l~----~CPiCR~~i~~~ 431 (435)
....||||=..+.-.++ .= | |.+|.-|...|. .||.|-..-...
T Consensus 171 ~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~~~~~ 224 (290)
T PF04216_consen 171 QRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNTDHEK 224 (290)
T ss_dssp T-SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT---SS-E
T ss_pred cCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCCCCcc
Confidence 34799999988777443 22 4 457889998773 799997654433
No 166
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=33.78 E-value=10 Score=25.62 Aligned_cols=20 Identities=35% Similarity=0.919 Sum_probs=12.0
Q ss_pred CCccchhhhhcC--------CCCCcccc
Q 013848 407 GHQTCCGCGQDL--------DLCPICRS 426 (435)
Q Consensus 407 GH~fC~~C~~~l--------~~CPiCR~ 426 (435)
.|.||..|...+ ..||.|..
T Consensus 2 ~~rfC~~CG~~t~~~~~g~~r~C~~Cg~ 29 (32)
T PF09297_consen 2 NHRFCGRCGAPTKPAPGGWARRCPSCGH 29 (32)
T ss_dssp TTSB-TTT--BEEE-SSSS-EEESSSS-
T ss_pred CCcccCcCCccccCCCCcCEeECCCCcC
Confidence 378999998744 37999875
No 167
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=33.75 E-value=1.4e+02 Score=26.71 Aligned_cols=68 Identities=22% Similarity=0.340 Sum_probs=43.9
Q ss_pred ccHHHHHHHHHhcCCceeceEEEEecCCCCC-------CC-----CC-----CCCCCCCcccCCCCCCHH-HHHHHHHhh
Q 013848 77 HSLEQVTDALARAGLESSNLIVGIDFTKSNE-------WT-----GA-----RSFQRRSLHHIGDDQNPY-EQAISIIGK 138 (435)
Q Consensus 77 ~~ld~v~~al~~~Gl~~~nlivaIDFT~SN~-------~~-----g~-----~~~~~~SLH~i~~~~N~Y-q~AI~~Ig~ 138 (435)
..|.++++|+++.|++ +++=+||+.-+. |. |+ +...+ ..|..-. ..+| +.++..|-+
T Consensus 44 Dllge~v~a~h~~Gir---v~ay~~~~~d~~~~~~HPeW~~~~~~G~~~~~~~~~~~-~~~~~c~-ns~Y~e~~~~~i~E 118 (132)
T PF14871_consen 44 DLLGEQVEACHERGIR---VPAYFDFSWDEDAAERHPEWFVRDADGRPMRGERFGYP-GWYTCCL-NSPYREFLLEQIRE 118 (132)
T ss_pred CHHHHHHHHHHHCCCE---EEEEEeeecChHHHHhCCceeeECCCCCCcCCCCcCCC-CceecCC-CccHHHHHHHHHHH
Confidence 5789999999999988 688888883321 32 22 11111 1333322 2344 677888888
Q ss_pred cccccCCCCcc
Q 013848 139 TLSSFDEDNLI 149 (435)
Q Consensus 139 vl~~yD~D~~i 149 (435)
+|+.|+-|+.|
T Consensus 119 i~~~y~~DGiF 129 (132)
T PF14871_consen 119 ILDRYDVDGIF 129 (132)
T ss_pred HHHcCCCCEEE
Confidence 99999998765
No 168
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=33.20 E-value=19 Score=36.54 Aligned_cols=26 Identities=27% Similarity=0.584 Sum_probs=19.6
Q ss_pred CCCCccchhhhhcC--------CCCCcccccccc
Q 013848 405 GCGHQTCCGCGQDL--------DLCPICRSFIQT 430 (435)
Q Consensus 405 ~CGH~fC~~C~~~l--------~~CPiCR~~i~~ 430 (435)
.=.|.||..|+.++ ..||.|+..+-.
T Consensus 108 ~~~~RFCg~CG~~~~~~~~g~~~~C~~cg~~~fP 141 (279)
T COG2816 108 YRSHRFCGRCGTKTYPREGGWARVCPKCGHEHFP 141 (279)
T ss_pred HhhCcCCCCCCCcCccccCceeeeCCCCCCccCC
Confidence 45789999999765 279999876543
No 169
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=32.84 E-value=10 Score=40.20 Aligned_cols=39 Identities=31% Similarity=0.671 Sum_probs=30.1
Q ss_pred CCCcccccccC--Ccc---ceeCCCCccchhhhhcC------CCCCcccc
Q 013848 388 DNHVCPICLTD--PKD---MAFGCGHQTCCGCGQDL------DLCPICRS 426 (435)
Q Consensus 388 e~~~CpICl~~--~~d---v~~~CGH~fC~~C~~~l------~~CPiCR~ 426 (435)
.++-|-.|-+. .++ -++||.|.|--.|+... ..||.||+
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 45789999775 333 45799999999999733 58999994
No 170
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=32.30 E-value=37 Score=34.91 Aligned_cols=39 Identities=23% Similarity=0.653 Sum_probs=27.7
Q ss_pred CCCcccccccCCcc-ce-e--CCCC--ccchhhhhcCC----CCCcccc
Q 013848 388 DNHVCPICLTDPKD-MA-F--GCGH--QTCCGCGQDLD----LCPICRS 426 (435)
Q Consensus 388 e~~~CpICl~~~~d-v~-~--~CGH--~fC~~C~~~l~----~CPiCR~ 426 (435)
....||||=..+.- ++ + .=|+ ..|.-|...|. .||.|-.
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 45799999988765 22 2 2343 46888888774 7999975
No 171
>cd01468 trunk_domain trunk domain. COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is known as the trunk domain and has an alpha/beta vWA fold and forms the dimer interface. Some members of this family possess a partial MIDAS motif that is a characteristic feature of most vWA domain proteins.
Probab=31.79 E-value=4.7e+02 Score=25.13 Aligned_cols=158 Identities=11% Similarity=0.161 Sum_probs=86.0
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccC--CCCccceeeeCCCCC------CC---Cc
Q 013848 95 NLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFD--EDNLIPCFGFGDAST------HD---QE 163 (435)
Q Consensus 95 nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~yD--~D~~ip~fGFGa~~~------~~---~~ 163 (435)
.+++.||.|..- +. ....+.++++|...|+... ++-+|-+..|+...+ .. +.
T Consensus 5 ~~vFvID~s~~a---------------i~--~~~l~~~~~sl~~~l~~lp~~~~~~igiITf~~~V~~~~~~~~~~~~~~ 67 (239)
T cd01468 5 VFVFVIDVSYEA---------------IK--EGLLQALKESLLASLDLLPGDPRARVGLITYDSTVHFYNLSSDLAQPKM 67 (239)
T ss_pred EEEEEEEcchHh---------------cc--ccHHHHHHHHHHHHHHhCCCCCCcEEEEEEeCCeEEEEECCCCCCCCeE
Confidence 468889988642 11 3556777787777777665 888888888876542 00 10
Q ss_pred -ccccCCCCC---ccCC-----------HHHHHHHHHHhcCcc-cccCCCChHHHHHHHHHHHHhc--CCceEEEEEEeC
Q 013848 164 -VFSFYPDEK---FCNG-----------FEEVLRRYRELVPHL-RLAGPTSFAPIIEMAITIVEHS--GGQYHVLVIIAD 225 (435)
Q Consensus 164 -vF~~~~~~~---~~~G-----------~~gvl~~Yr~~~~~v-~l~GPT~fapII~~a~~~~~~~--~~~Y~VLlIiTD 225 (435)
|++ +-+|+ ...+ +..+|+........+ .-....++.+.++.|..+.+.. +|+ | ++++.
T Consensus 68 ~v~~-dl~d~f~p~~~~~l~~~~e~~~~i~~~l~~l~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~gGk--I-~~f~s 143 (239)
T cd01468 68 YVVS-DLKDVFLPLPDRFLVPLSECKKVIHDLLEQLPPMFWPVPTHRPERCLGPALQAAFLLLKGTFAGGR--I-IVFQG 143 (239)
T ss_pred EEeC-CCccCcCCCcCceeeeHHHHHHHHHHHHHhhhhhccccCCCCCcccHHHHHHHHHHHHhhcCCCce--E-EEEEC
Confidence 110 11121 1112 222333322222211 1123479999999999999887 553 3 44454
Q ss_pred CcccccCCcccCcc------------------chhHHHHHHHHHHhcCCCeEEEEEecCCC--CCCcccccC
Q 013848 226 GQVTRSVDTEHGQL------------------SSQEKKTVEAIVKASEYPLSIILVGVGDG--PWDMMREFD 277 (435)
Q Consensus 226 G~i~d~~d~~~~~~------------------~~~~~~T~~aIv~AS~~PLSIIiVGVGd~--~f~~m~~lD 277 (435)
|-.+ ...|.| .+..+--.+.-.++++.-+|+=+...+.. +...|..|-
T Consensus 144 g~pt----~GpG~l~~~~~~~~~~~~~e~~~~~~a~~fY~~la~~~~~~~isvdlF~~~~~~~dl~~l~~l~ 211 (239)
T cd01468 144 GLPT----VGPGKLKSREDKEPIRSHDEAQLLKPATKFYKSLAKECVKSGICVDLFAFSLDYVDVATLKQLA 211 (239)
T ss_pred CCCC----CCCCccccCcccccCCCccchhcccccHHHHHHHHHHHHHcCeEEEEEeccccccCHHHhhhhh
Confidence 5443 122332 23223334455667777888877776654 444555553
No 172
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=30.52 E-value=21 Score=40.14 Aligned_cols=23 Identities=39% Similarity=0.943 Sum_probs=19.0
Q ss_pred ceeCCCCccchhhhhcC--CCCCccc
Q 013848 402 MAFGCGHQTCCGCGQDL--DLCPICR 425 (435)
Q Consensus 402 v~~~CGH~fC~~C~~~l--~~CPiCR 425 (435)
+.+.|||..|..|++.+ ..|| |.
T Consensus 29 vsl~cghtic~~c~~~lyn~scp-~~ 53 (861)
T KOG3161|consen 29 VSLQCGHTICGHCVQLLYNASCP-TK 53 (861)
T ss_pred ccccccchHHHHHHHhHhhccCC-CC
Confidence 55689999999999987 4798 53
No 173
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=30.04 E-value=13 Score=32.55 Aligned_cols=38 Identities=26% Similarity=0.698 Sum_probs=25.5
Q ss_pred CcccccccCCc---c---ceeCCCCccchhhhhc-----CCCCCccccc
Q 013848 390 HVCPICLTDPK---D---MAFGCGHQTCCGCGQD-----LDLCPICRSF 427 (435)
Q Consensus 390 ~~CpICl~~~~---d---v~~~CGH~fC~~C~~~-----l~~CPiCR~~ 427 (435)
..|.+|...+. + .-..|+|.+|..|... .+.|-+|+..
T Consensus 55 ~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~~~~~~~WlC~vC~k~ 103 (118)
T PF02318_consen 55 RHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVYSKKEPIWLCKVCQKQ 103 (118)
T ss_dssp SB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEETSSSCCEEEHHHHHH
T ss_pred cchhhhCCcccccCCCCCcCCcCCccccCccCCcCCCCCCEEChhhHHH
Confidence 48999977542 2 2238999999999864 3479888763
No 174
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=29.50 E-value=13 Score=37.56 Aligned_cols=37 Identities=32% Similarity=0.697 Sum_probs=27.3
Q ss_pred ccccccCCcc-----ceeCCCCccchhhhhcC----CCCCccccccc
Q 013848 392 CPICLTDPKD-----MAFGCGHQTCCGCGQDL----DLCPICRSFIQ 429 (435)
Q Consensus 392 CpICl~~~~d-----v~~~CGH~fC~~C~~~l----~~CPiCR~~i~ 429 (435)
||||.+..-. .+++|||..=..|.+.. -.||+|.. +.
T Consensus 161 cPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~-~~ 206 (276)
T KOG1940|consen 161 CPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK-PG 206 (276)
T ss_pred CchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc-hH
Confidence 9999886433 34599998767777644 48999987 43
No 175
>PF04084 ORC2: Origin recognition complex subunit 2 ; InterPro: IPR007220 The Origin Recognition Complex (ORC) is a six-subunit ATP-dependent DNA-binding complex encoded in yeast by ORC1-6 []. ORC is a central component for eukaryotic DNA replication, and binds chromatin at replication origins throughout the cell cycle []. ORC directs DNA replication throughout the genome and is required for its initiation [, , ]. ORC bound at replication origins serves as the foundation for assembly of the pre-replicative complex (pre-RC), which includes Cdc6, Tah11 (aka Cdt1), and the Mcm2-7 complex [, , ]. Pre-RC assembly during G1 is required for replication licensing of chromosomes prior to DNA synthesis during S phase [, , ]. Cell cycle-regulated phosphorylation of Orc2, Orc6, Cdc6, and MCM by the cyclin-dependent protein kinase Cdc28 regulates initiation of DNA replication, including blocking reinitiation in G2/M phase [, , , ]. In yeast, ORC also plays a role in the establishment of silencing at the mating-type loci Hidden MAT Left (HML) and Hidden MAT Right (HMR) [, , ]. ORC participates in the assembly of transcriptionally silent chromatin at HML and HMR by recruiting the Sir1 silencing protein to the HML and HMR silencers [, , ]. Both Orc1 and Orc5 bind ATP, though only Orc1 has ATPase activity []. The binding of ATP by Orc1 is required for ORC binding to DNA and is essential for cell viability []. The ATPase activity of Orc1 is involved in formation of the pre-RC [, , ]. ATP binding by Orc5 is crucial for the stability of ORC as a whole. Only the Orc1-5 subunits are required for origin binding; Orc6 is essential for maintenance of pre-RCs once formed []. Interactions within ORC suggest that Orc2-3-6 may form a core complex []. ORC homologues have been found in various eukaryotes, including fission yeast, insects, amphibians, and humans []. This entry represents subunit 2, which binds the origin of replication. It plays a role in chromosome replication and mating type transcriptional silencing.; GO: 0006260 DNA replication, 0000808 origin recognition complex, 0005634 nucleus
Probab=29.26 E-value=3.2e+02 Score=28.18 Aligned_cols=109 Identities=17% Similarity=0.192 Sum_probs=61.6
Q ss_pred ccceeeeCCCCC----------CC---CcccccCCCCCccCCHHHHHHHHHHhcCcccccCCCChHHHHHHHHHHHHhcC
Q 013848 148 LIPCFGFGDAST----------HD---QEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSG 214 (435)
Q Consensus 148 ~ip~fGFGa~~~----------~~---~~vF~~~~~~~~~~G~~gvl~~Yr~~~~~v~l~GPT~fapII~~a~~~~~~~~ 214 (435)
.+=+||||-|.. .+ ..|+-+|+-.|.+ .+.+|+..--+.+-...-..+..-...++.+.+..+...
T Consensus 56 nlL~YG~GSKr~lL~~Fa~~~l~~~~~~~~vvvnGy~p~~-~~k~il~~I~~~l~~~~~~~~~~~~~~~~~i~~~l~~~~ 134 (326)
T PF04084_consen 56 NLLFYGYGSKRKLLNDFAEKYLSDWGDGPVVVVNGYFPSL-SIKDILNTIEEALLPEPSKKPKSPSEQLDFIISYLESRP 134 (326)
T ss_pred eEEEEecChHHHHHHHHHHHHhhccCCCcEEEEEccCCCC-cHHHHHHHHHHHHhhhcccccCCHHHHHHHHHHHHhccC
Confidence 388999998742 12 4555455444443 566777765444433322344566666666666666553
Q ss_pred -CceEEEEEE-eCCcccccCCcccCccchhHHHHHHHHHHhcCCCeEEEEEecCCCC
Q 013848 215 -GQYHVLVII-ADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGDGP 269 (435)
Q Consensus 215 -~~Y~VLlIi-TDG~i~d~~d~~~~~~~~~~~~T~~aIv~AS~~PLSIIiVGVGd~~ 269 (435)
....+|||= -||..-+ ..++..+|..=+..|-=.+|.=|=.-+
T Consensus 135 ~~~~l~lvIHnIDg~~LR------------~~~~Q~~La~LA~~p~I~lIASiDhin 179 (326)
T PF04084_consen 135 SPPPLYLVIHNIDGPSLR------------NEKAQSLLAQLASIPNIHLIASIDHIN 179 (326)
T ss_pred CCCceEEEEECCCChhhc------------ChHHHHHHHHHHcCCCeEEEEeccCCC
Confidence 233333333 7888765 235556666666777766665554434
No 176
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.09 E-value=20 Score=32.45 Aligned_cols=22 Identities=36% Similarity=0.998 Sum_probs=16.1
Q ss_pred ccchhhhhc-CCCCCcccccccc
Q 013848 409 QTCCGCGQD-LDLCPICRSFIQT 430 (435)
Q Consensus 409 ~fC~~C~~~-l~~CPiCR~~i~~ 430 (435)
.||..|... +..||+|..+|..
T Consensus 29 afcskcgeati~qcp~csasirg 51 (160)
T COG4306 29 AFCSKCGEATITQCPICSASIRG 51 (160)
T ss_pred HHHhhhchHHHhcCCccCCcccc
Confidence 477778764 4588888888764
No 177
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.84 E-value=32 Score=34.53 Aligned_cols=44 Identities=18% Similarity=0.461 Sum_probs=32.4
Q ss_pred CCCCcccccccCCcc----cee-CCCCccchhhhhcC--CCCCcccccccc
Q 013848 387 SDNHVCPICLTDPKD----MAF-GCGHQTCCGCGQDL--DLCPICRSFIQT 430 (435)
Q Consensus 387 ~e~~~CpICl~~~~d----v~~-~CGH~fC~~C~~~l--~~CPiCR~~i~~ 430 (435)
.....|||---.+.. +++ +|||.|-..-+..+ ..|+.|.+....
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeikas~C~~C~a~y~~ 159 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIKASVCHVCGAAYQE 159 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHhhhccccccCCcccc
Confidence 445789987554443 344 99999988887766 489999998754
No 178
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=27.90 E-value=39 Score=35.13 Aligned_cols=36 Identities=25% Similarity=0.677 Sum_probs=27.2
Q ss_pred CcccccccCCcc-cee---CCCCccchhhhh----cCCCCCccc
Q 013848 390 HVCPICLTDPKD-MAF---GCGHQTCCGCGQ----DLDLCPICR 425 (435)
Q Consensus 390 ~~CpICl~~~~d-v~~---~CGH~fC~~C~~----~l~~CPiCR 425 (435)
..|-.|.+..+. ..+ .|.+.||.+|-. .+..||-|.
T Consensus 331 ~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHesLh~CpgCe 374 (378)
T KOG2807|consen 331 RFCFACQGELLSSGRYRCESCKNVFCLDCDVFIHESLHNCPGCE 374 (378)
T ss_pred cceeeeccccCCCCcEEchhccceeeccchHHHHhhhhcCCCcC
Confidence 459999666555 333 788999999974 556899996
No 179
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=27.13 E-value=40 Score=34.63 Aligned_cols=40 Identities=25% Similarity=0.639 Sum_probs=28.3
Q ss_pred CCCcccccccCCcc-ceeC----CC--CccchhhhhcCC----CCCccccc
Q 013848 388 DNHVCPICLTDPKD-MAFG----CG--HQTCCGCGQDLD----LCPICRSF 427 (435)
Q Consensus 388 e~~~CpICl~~~~d-v~~~----CG--H~fC~~C~~~l~----~CPiCR~~ 427 (435)
....||||-..+.- ++.. =| |..|.-|...|. .||.|-..
T Consensus 183 ~~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 183 SRTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEES 233 (305)
T ss_pred CCCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccCccCCCCCCC
Confidence 45699999998865 2222 34 446889988774 79999763
No 180
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=26.37 E-value=44 Score=27.77 Aligned_cols=42 Identities=26% Similarity=0.765 Sum_probs=16.9
Q ss_pred CCcccccccCC---cc-cee----CCCCccchhhhh-----cCCCCCcccccccc
Q 013848 389 NHVCPICLTDP---KD-MAF----GCGHQTCCGCGQ-----DLDLCPICRSFIQT 430 (435)
Q Consensus 389 ~~~CpICl~~~---~d-v~~----~CGH~fC~~C~~-----~l~~CPiCR~~i~~ 430 (435)
...|.||-+.. .+ -+| .|+--+|+.|.+ ....||.|+.+..+
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B---
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccc
Confidence 36899997642 22 122 677778999985 34689999987653
No 181
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=26.23 E-value=27 Score=36.13 Aligned_cols=40 Identities=25% Similarity=0.492 Sum_probs=29.3
Q ss_pred CCCcccccccCCcc----ceeCCCCccchhhhhcC-------CCCCccccc
Q 013848 388 DNHVCPICLTDPKD----MAFGCGHQTCCGCGQDL-------DLCPICRSF 427 (435)
Q Consensus 388 e~~~CpICl~~~~d----v~~~CGH~fC~~C~~~l-------~~CPiCR~~ 427 (435)
.-..|||=-+...+ +.+.|||..-.+-+..+ .+||.|-..
T Consensus 335 s~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~~ 385 (396)
T COG5109 335 SLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPEM 385 (396)
T ss_pred ceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCcc
Confidence 34789987665443 67799999988877655 279999653
No 182
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=26.03 E-value=3.5e+02 Score=26.78 Aligned_cols=38 Identities=26% Similarity=0.346 Sum_probs=26.7
Q ss_pred hhcccccccccccHHHHHHHHHhcCCceeceEEEEecCCCCCCCCCCCCC
Q 013848 66 ERKYSKIDDNYHSLEQVTDALARAGLESSNLIVGIDFTKSNEWTGARSFQ 115 (435)
Q Consensus 66 ~~~~~~i~~~y~~ld~v~~al~~~Gl~~~nlivaIDFT~SN~~~g~~~~~ 115 (435)
-+.|+.--.+--++|||+..+ +|+++ -||.||| +++|+
T Consensus 92 cqShrlt~edpvtveyitRyi--A~~kQ-------rYTqs~g---rRPFG 129 (249)
T KOG0183|consen 92 CQSHRLTLEDPVTVEYITRYI--AGLKQ-------RYTQSNG---RRPFG 129 (249)
T ss_pred hhhhhcccCCCcHHHHHHHHH--HHhhh-------hhhccCC---ccccc
Confidence 455666666777889998886 56665 4788885 56776
No 183
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=25.93 E-value=39 Score=35.06 Aligned_cols=43 Identities=28% Similarity=0.600 Sum_probs=26.3
Q ss_pred CCCcccccccCC--------------cc-----cee-CCCCccchhhhhcC-------------CCCCcccccccc
Q 013848 388 DNHVCPICLTDP--------------KD-----MAF-GCGHQTCCGCGQDL-------------DLCPICRSFIQT 430 (435)
Q Consensus 388 e~~~CpICl~~~--------------~d-----v~~-~CGH~fC~~C~~~l-------------~~CPiCR~~i~~ 430 (435)
.+.+||+|+..- .| -+| ||||++-..-..-| ..||.|-..+..
T Consensus 340 ~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 340 RERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred ccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 457899998631 11 235 89997544433322 169999876643
No 184
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=24.99 E-value=20 Score=33.32 Aligned_cols=25 Identities=28% Similarity=0.715 Sum_probs=20.2
Q ss_pred CCccchhhhhcC-CCCCccccccccc
Q 013848 407 GHQTCCGCGQDL-DLCPICRSFIQTR 431 (435)
Q Consensus 407 GH~fC~~C~~~l-~~CPiCR~~i~~~ 431 (435)
.+.||..|+.+. ..||.|..+|...
T Consensus 27 ~~~fC~kCG~~tI~~Cp~C~~~IrG~ 52 (158)
T PF10083_consen 27 REKFCSKCGAKTITSCPNCSTPIRGD 52 (158)
T ss_pred HHHHHHHhhHHHHHHCcCCCCCCCCc
Confidence 356999999865 6899999998764
No 185
>PTZ00081 enolase; Provisional
Probab=24.67 E-value=7.6e+02 Score=26.63 Aligned_cols=66 Identities=15% Similarity=0.312 Sum_probs=42.1
Q ss_pred ccccHHHHHHHHHhcCCceeceEEEEecCCCCCCCC-CCCCCCCCcccCC---C--CCCHHHHHHHHHhhcccccC
Q 013848 75 NYHSLEQVTDALARAGLESSNLIVGIDFTKSNEWTG-ARSFQRRSLHHIG---D--DQNPYEQAISIIGKTLSSFD 144 (435)
Q Consensus 75 ~y~~ld~v~~al~~~Gl~~~nlivaIDFT~SN~~~g-~~~~~~~SLH~i~---~--~~N~Yq~AI~~Ig~vl~~yD 144 (435)
.-.-|+.|.+|++++|++ -++.+|||+-+|.-|.. +..|+ +.+.. . ..-.-++.|+-+.+.++.|+
T Consensus 227 ~eeal~ll~eAi~~ag~~-~~v~i~lD~Aase~~~~~~~~Y~---~~f~~~~~~~~~~~s~~eli~~~~~~l~~y~ 298 (439)
T PTZ00081 227 PEEALDLLVEAIKKAGYE-GKVKICMDVAASEFYDKEKKVYD---LDFKNPNNDKSNKLTGEELVELYLDLVKKYP 298 (439)
T ss_pred HHHHHHHHHHHHHHcCCc-CceEEEEehhhhhhhhccCCcee---eeeccccCccccccCHHHHHHHHHHHHhcCC
Confidence 334577788999999999 58999999998864310 00111 11111 1 12456777777778888874
No 186
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=24.47 E-value=2.7e+02 Score=28.03 Aligned_cols=21 Identities=29% Similarity=0.613 Sum_probs=9.9
Q ss_pred HHHHHHHHHHhcCCCeEEEEEecCC
Q 013848 243 EKKTVEAIVKASEYPLSIILVGVGD 267 (435)
Q Consensus 243 ~~~T~~aIv~AS~~PLSIIiVGVGd 267 (435)
.++..+||. ++..| ||.|||-
T Consensus 96 ~e~varai~-~~~~P---visaIGH 116 (319)
T PF02601_consen 96 DEEVARAIA-ASPIP---VISAIGH 116 (319)
T ss_pred hHHHHHHHH-hCCCC---EEEecCC
Confidence 344444444 23444 5556663
No 187
>COG3552 CoxE Protein containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=24.47 E-value=2.5e+02 Score=29.84 Aligned_cols=105 Identities=18% Similarity=0.184 Sum_probs=61.1
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCCCCccceeeeCCCCCCCCcccccCCCCCcc
Q 013848 95 NLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKFC 174 (435)
Q Consensus 95 nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~yD~D~~ip~fGFGa~~~~~~~vF~~~~~~~~~ 174 (435)
.++|-+|.|+|+.| | .+-|-.-+.+ .-+.+..- -+|-||...+...+++. .
T Consensus 220 ~lvvL~DVSGSm~~-----y-----------s~~~L~l~hA---l~q~~~R~---~~F~F~TRLt~vT~~l~-------~ 270 (395)
T COG3552 220 PLVVLCDVSGSMSG-----Y-----------SRIFLHLLHA---LRQQRSRV---HVFLFGTRLTRVTHMLR-------E 270 (395)
T ss_pred CeEEEEecccchhh-----h-----------HHHHHHHHHH---HHhcccce---eEEEeechHHHHHHHhc-------c
Confidence 58999999999964 2 2444444444 33445433 39999998765544432 2
Q ss_pred CCHHHHHHHHHHhcCcccccCCCChHHHHHHHHHHHHhcC-CceEEEEEEeCCcccc
Q 013848 175 NGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSG-GQYHVLVIIADGQVTR 230 (435)
Q Consensus 175 ~G~~gvl~~Yr~~~~~v~l~GPT~fapII~~a~~~~~~~~-~~Y~VLlIiTDG~i~d 230 (435)
.+.+..+.+-...+.. -+|-|-..+.+..-..--..+. ..=-++||+|||--.|
T Consensus 271 rD~~~Al~~~~a~v~d--w~ggTrig~tl~aF~~~~~~~~L~~gA~VlilsDg~drd 325 (395)
T COG3552 271 RDLEDALRRLSAQVKD--WDGGTRIGNTLAAFLRRWHGNVLSGGAVVLILSDGLDRD 325 (395)
T ss_pred CCHHHHHHHHHhhccc--ccCCcchhHHHHHHHccccccccCCceEEEEEecccccC
Confidence 3556666655544332 4566777766554433311110 1226789999996554
No 188
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.33 E-value=32 Score=34.05 Aligned_cols=41 Identities=24% Similarity=0.432 Sum_probs=29.9
Q ss_pred CcccccccCCcc---ceeCCCCccchhhhhcC------------CCCCcccccccc
Q 013848 390 HVCPICLTDPKD---MAFGCGHQTCCGCGQDL------------DLCPICRSFIQT 430 (435)
Q Consensus 390 ~~CpICl~~~~d---v~~~CGH~fC~~C~~~l------------~~CPiCR~~i~~ 430 (435)
.-|..|-..... +.+-|-|.|-.+|+... -.||.|.++|-.
T Consensus 51 pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFP 106 (299)
T KOG3970|consen 51 PNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFP 106 (299)
T ss_pred CCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCC
Confidence 457777655433 55799999999999643 279999988743
No 189
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=24.01 E-value=68 Score=33.27 Aligned_cols=45 Identities=13% Similarity=0.147 Sum_probs=33.0
Q ss_pred CCCCcccccccCCcccee-CCCCc-cchhhhh-----cCCCCCccccccccc
Q 013848 387 SDNHVCPICLTDPKDMAF-GCGHQ-TCCGCGQ-----DLDLCPICRSFIQTR 431 (435)
Q Consensus 387 ~e~~~CpICl~~~~dv~~-~CGH~-fC~~C~~-----~l~~CPiCR~~i~~~ 431 (435)
.....|.+|+++...++. +|+|. ||-.|.. +...|++|...+.+.
T Consensus 134 ~~ti~~iqq~tnt~I~T~v~~~~~Vf~Vtg~~~nC~kra~s~eie~ta~~ra 185 (394)
T KOG2113|consen 134 GATIKRIQQFTNTYIATPVRCGEPVFCVTGAPKNCVKRARSCEIEQTAVTRA 185 (394)
T ss_pred cCccchheecccceEeeeccCCCceEEEecCCcchhhhccccchhhhhhhhh
Confidence 445789999988777554 99998 8877754 445799997665543
No 190
>COG3864 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.96 E-value=71 Score=33.26 Aligned_cols=53 Identities=25% Similarity=0.341 Sum_probs=34.0
Q ss_pred ccccCCCChHHHHHHHHHHHHhcCCceEEEEEEeCCcccccCCcccCccchhHHHHHHHHHHhcCCCeEEEEEecCC
Q 013848 191 LRLAGPTSFAPIIEMAITIVEHSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGD 267 (435)
Q Consensus 191 v~l~GPT~fapII~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~T~~aIv~AS~~PLSIIiVGVGd 267 (435)
+.=.|-|.|.||++.. ++.... -+|+.+|||--+- . | .+-.-|+=||+-|-|.
T Consensus 322 ~~ggG~Tdf~Pvfeyl----ek~~~~-~~lIyfTDG~gd~------------p------~-~~r~~~~lwVl~~~~~ 374 (396)
T COG3864 322 LDGGGGTDFSPVFEYL----EKNRME-CFLIYFTDGMGDQ------------P------L-VFRPKVLLWVLTGAKG 374 (396)
T ss_pred cCCCCCccccHHHHHH----Hhhccc-ceEEEEccCCCCc------------c------c-ccCCcceEEEecCCcc
Confidence 3335679999999865 332212 6889999997542 0 1 1234468888888663
No 191
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=23.45 E-value=74 Score=38.80 Aligned_cols=70 Identities=17% Similarity=0.318 Sum_probs=47.9
Q ss_pred CccceeeeCCCCCCCCcccccCCCCCccCCHHHHHHHHHHhcCcccccCCC-----ChHHHHHHHHHH-HHhcCCceEEE
Q 013848 147 NLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPT-----SFAPIIEMAITI-VEHSGGQYHVL 220 (435)
Q Consensus 147 ~~ip~fGFGa~~~~~~~vF~~~~~~~~~~G~~gvl~~Yr~~~~~v~l~GPT-----~fapII~~a~~~-~~~~~~~Y~VL 220 (435)
-.||+|||-.. ++-+...++.+-..|-+.+++|+..||- +|.-.|-.+|.- .+++. .-.-
T Consensus 2146 le~PaYglQ~T------------~~vP~dSies~A~~yirqirkvQP~GPYrl~GYSyG~~l~f~ma~~Lqe~~--~~~~ 2211 (2376)
T KOG1202|consen 2146 LEIPAYGLQCT------------EAVPLDSIESLAAYYIRQIRKVQPEGPYRLAGYSYGACLAFEMASQLQEQQ--SPAP 2211 (2376)
T ss_pred cCCcchhhhcc------------ccCCcchHHHHHHHHHHHHHhcCCCCCeeeeccchhHHHHHHHHHHHHhhc--CCCc
Confidence 35778877542 1224557899999999999999999994 566666655443 33332 2344
Q ss_pred EEEeCCcccc
Q 013848 221 VIIADGQVTR 230 (435)
Q Consensus 221 lIiTDG~i~d 230 (435)
||+-||..+-
T Consensus 2212 lillDGspty 2221 (2376)
T KOG1202|consen 2212 LILLDGSPTY 2221 (2376)
T ss_pred EEEecCchHH
Confidence 9999999873
No 192
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=22.81 E-value=28 Score=26.95 Aligned_cols=29 Identities=24% Similarity=0.640 Sum_probs=15.5
Q ss_pred CCCcccccccCCccce---e--CCCCccchhhhh
Q 013848 388 DNHVCPICLTDPKDMA---F--GCGHQTCCGCGQ 416 (435)
Q Consensus 388 e~~~CpICl~~~~dv~---~--~CGH~fC~~C~~ 416 (435)
+...|.+|...|.-.. - .||+.||..|..
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~ 41 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSS 41 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhC
Confidence 3468999998884421 1 899999999975
No 193
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=22.37 E-value=2.1e+02 Score=30.23 Aligned_cols=65 Identities=20% Similarity=0.314 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhcCCceEEEEEE--eCCcccccCCcccCccchhHHHHHHHHHHhcCCCeEEEEEecCCCCCCcccccCCC
Q 013848 202 IIEMAITIVEHSGGQYHVLVII--ADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGDGPWDMMREFDDN 279 (435)
Q Consensus 202 II~~a~~~~~~~~~~Y~VLlIi--TDG~i~d~~d~~~~~~~~~~~~T~~aIv~AS~~PLSIIiVGVGd~~f~~m~~lDd~ 279 (435)
+|+.+++.++.......|.++= .-|.-. ..+.++||..+.....=+||||=|.|.++.|--||+.
T Consensus 148 a~~D~~~~~~~r~p~~~~~~~~~~vQG~~A-------------~~~i~~al~~~~~~~~Dviii~RGGGS~eDL~~Fn~e 214 (438)
T PRK00286 148 AIRDILTVLRRRFPLVEVIIYPTLVQGEGA-------------AASIVAAIERANARGEDVLIVARGGGSLEDLWAFNDE 214 (438)
T ss_pred HHHHHHHHHHhcCCCCeEEEecCcCcCccH-------------HHHHHHHHHHhcCCCCCEEEEecCCCCHHHhhccCcH
Confidence 5666666666553333444433 334432 5778888888877667889999999999888888873
No 194
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=22.28 E-value=69 Score=27.72 Aligned_cols=20 Identities=35% Similarity=0.785 Sum_probs=14.5
Q ss_pred CCccchhhhhc-------------CCCCCcccc
Q 013848 407 GHQTCCGCGQD-------------LDLCPICRS 426 (435)
Q Consensus 407 GH~fC~~C~~~-------------l~~CPiCR~ 426 (435)
.-.||..|+.. -+.||.||.
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 55699999741 247999986
No 195
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.08 E-value=32 Score=34.60 Aligned_cols=44 Identities=23% Similarity=0.477 Sum_probs=30.8
Q ss_pred CCCCCCcccccccCCcc---cee--CCCC-----ccchhhhhcCC------------CCCcccccc
Q 013848 385 STSDNHVCPICLTDPKD---MAF--GCGH-----QTCCGCGQDLD------------LCPICRSFI 428 (435)
Q Consensus 385 ~l~e~~~CpICl~~~~d---v~~--~CGH-----~fC~~C~~~l~------------~CPiCR~~i 428 (435)
..+.+..|-||+.-.+| ... ||.+ .+-..|+.+|. .||.|+..-
T Consensus 16 ~~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEY 81 (293)
T KOG3053|consen 16 NQELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEY 81 (293)
T ss_pred ccccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchh
Confidence 34567899999988777 222 8753 35568887652 699998754
No 196
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=21.68 E-value=49 Score=21.70 Aligned_cols=20 Identities=30% Similarity=0.770 Sum_probs=9.5
Q ss_pred cccccccCCcc-cee--CCCCcc
Q 013848 391 VCPICLTDPKD-MAF--GCGHQT 410 (435)
Q Consensus 391 ~CpICl~~~~d-v~~--~CGH~f 410 (435)
.||-|...-.. ..+ .|||.|
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhhcCcCCCCCCCC
Confidence 46666554333 222 366554
No 197
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=21.65 E-value=46 Score=28.29 Aligned_cols=37 Identities=27% Similarity=0.642 Sum_probs=28.8
Q ss_pred CCcccccccCCccceeCCCCccchhhhhcCCCCCccccccc
Q 013848 389 NHVCPICLTDPKDMAFGCGHQTCCGCGQDLDLCPICRSFIQ 429 (435)
Q Consensus 389 ~~~CpICl~~~~dv~~~CGH~fC~~C~~~l~~CPiCR~~i~ 429 (435)
...|.||-.. +-.=||.+|..|+-.--.|.+|-..|.
T Consensus 44 ~~~C~~CK~~----v~q~g~~YCq~CAYkkGiCamCGKki~ 80 (90)
T PF10235_consen 44 SSKCKICKTK----VHQPGAKYCQTCAYKKGICAMCGKKIL 80 (90)
T ss_pred Cccccccccc----cccCCCccChhhhcccCcccccCCeec
Confidence 4579999742 123488999999998889999988773
No 198
>PLN02189 cellulose synthase
Probab=21.50 E-value=56 Score=38.75 Aligned_cols=40 Identities=33% Similarity=0.747 Sum_probs=29.0
Q ss_pred CcccccccCC---cc----cee-CCCCccchhhhhcC-----CCCCccccccc
Q 013848 390 HVCPICLTDP---KD----MAF-GCGHQTCCGCGQDL-----DLCPICRSFIQ 429 (435)
Q Consensus 390 ~~CpICl~~~---~d----v~~-~CGH~fC~~C~~~l-----~~CPiCR~~i~ 429 (435)
..|.||-+.. ++ ++- .|+--.|+.|.+-- ..||.|++...
T Consensus 35 ~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 35 QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 5999998863 22 222 57777999999632 48999998765
No 199
>PLN02436 cellulose synthase A
Probab=21.41 E-value=57 Score=38.84 Aligned_cols=41 Identities=27% Similarity=0.694 Sum_probs=29.5
Q ss_pred CCcccccccC---Ccc----cee-CCCCccchhhhhcC-----CCCCccccccc
Q 013848 389 NHVCPICLTD---PKD----MAF-GCGHQTCCGCGQDL-----DLCPICRSFIQ 429 (435)
Q Consensus 389 ~~~CpICl~~---~~d----v~~-~CGH~fC~~C~~~l-----~~CPiCR~~i~ 429 (435)
...|.||-+. ..+ ++- .|+--.|..|.+-- ..||.|++...
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 3599999876 333 222 57777999999632 48999998765
No 200
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.40 E-value=49 Score=35.34 Aligned_cols=30 Identities=30% Similarity=0.781 Sum_probs=24.5
Q ss_pred CCCcccccccCCcc-ce-eCCCCccchhhhhc
Q 013848 388 DNHVCPICLTDPKD-MA-FGCGHQTCCGCGQD 417 (435)
Q Consensus 388 e~~~CpICl~~~~d-v~-~~CGH~fC~~C~~~ 417 (435)
....|-||.+.... ++ +.|||.||..|...
T Consensus 69 ~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~ 100 (444)
T KOG1815|consen 69 GDVQCGICVESYDGEIIGLGCGHPFCPPCWTG 100 (444)
T ss_pred ccccCCcccCCCcchhhhcCCCcHHHHHHHHH
Confidence 45689999998875 44 49999999999863
No 201
>PLN02400 cellulose synthase
Probab=21.11 E-value=52 Score=39.17 Aligned_cols=41 Identities=27% Similarity=0.731 Sum_probs=29.2
Q ss_pred CCcccccccC---Ccc----cee-CCCCccchhhhhc-----CCCCCccccccc
Q 013848 389 NHVCPICLTD---PKD----MAF-GCGHQTCCGCGQD-----LDLCPICRSFIQ 429 (435)
Q Consensus 389 ~~~CpICl~~---~~d----v~~-~CGH~fC~~C~~~-----l~~CPiCR~~i~ 429 (435)
...|.||-+. ..+ ++- .|+--+|+.|.+- ...||.|+....
T Consensus 36 gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 36 GQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred CceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 3599999875 222 222 6777799999962 348999998765
No 202
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.07 E-value=57 Score=32.77 Aligned_cols=33 Identities=15% Similarity=0.035 Sum_probs=27.1
Q ss_pred CCCCCCCcccccccCCcc-ceeCCCCccchhhhh
Q 013848 384 SSTSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQ 416 (435)
Q Consensus 384 ~~l~e~~~CpICl~~~~d-v~~~CGH~fC~~C~~ 416 (435)
.+..+-..|+.||....+ |+.+=||.||++|+.
T Consensus 38 DsiK~FdcCsLtLqPc~dPvit~~GylfdrEaIL 71 (303)
T KOG3039|consen 38 DSIKPFDCCSLTLQPCRDPVITPDGYLFDREAIL 71 (303)
T ss_pred cccCCcceeeeecccccCCccCCCCeeeeHHHHH
Confidence 344566789999999999 555899999999985
No 203
>PRK05434 phosphoglyceromutase; Provisional
Probab=20.86 E-value=2.8e+02 Score=30.57 Aligned_cols=31 Identities=29% Similarity=0.547 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHhcCCceEEEEEEeCCcccc
Q 013848 200 APIIEMAITIVEHSGGQYHVLVIIADGQVTR 230 (435)
Q Consensus 200 apII~~a~~~~~~~~~~Y~VLlIiTDG~i~d 230 (435)
.+++.++++.++++++.-|++=.++||.|+-
T Consensus 95 n~~~~~~~~~~~~~~~~lHl~GL~SdggVHs 125 (507)
T PRK05434 95 NPALLDAIDKAKKNGGALHLMGLLSDGGVHS 125 (507)
T ss_pred CHHHHHHHHHHHhcCCeEEEEEeccCCCccc
Confidence 4666777777777667777777777777774
No 204
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=20.29 E-value=37 Score=29.73 Aligned_cols=23 Identities=22% Similarity=0.495 Sum_probs=19.5
Q ss_pred CCCCccchhhhhcC----CCCCccccc
Q 013848 405 GCGHQTCCGCGQDL----DLCPICRSF 427 (435)
Q Consensus 405 ~CGH~fC~~C~~~l----~~CPiCR~~ 427 (435)
-|.|.|-.-|+.++ ..||+|.+.
T Consensus 80 ~CNHaFH~hCisrWlktr~vCPLdn~e 106 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKTRNVCPLDNKE 106 (114)
T ss_pred ecchHHHHHHHHHHHhhcCcCCCcCcc
Confidence 79999999999877 379999764
No 205
>TIGR01307 pgm_bpd_ind 2,3-bisphosphoglycerate-independent phosphoglycerate mutase. This protein is about double in length of, and devoid of homology to the form of phosphoglycerate mutase that uses 2,3-bisphosphoglycerate as a cofactor.
Probab=20.21 E-value=2.9e+02 Score=30.40 Aligned_cols=31 Identities=26% Similarity=0.491 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhcCCceEEEEEEeCCcccc
Q 013848 200 APIIEMAITIVEHSGGQYHVLVIIADGQVTR 230 (435)
Q Consensus 200 apII~~a~~~~~~~~~~Y~VLlIiTDG~i~d 230 (435)
-|++..+++.++++++.-|++=.++||.|+.
T Consensus 91 n~~l~~~~~~~~~~~~~lHl~GL~SdGgVHs 121 (501)
T TIGR01307 91 NPALLGAIDRAKDNNGKLHLMGLVSDGGVHS 121 (501)
T ss_pred CHHHHHHHHHHHhcCCceEEEEeccCCCCcc
Confidence 5677777777777777778877888888774
No 206
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.12 E-value=41 Score=32.20 Aligned_cols=48 Identities=25% Similarity=0.503 Sum_probs=32.7
Q ss_pred CCCCCCcccccccCCccce--------eCCCCccchhhhhcC---------------CCCCcccccccccc
Q 013848 385 STSDNHVCPICLTDPKDMA--------FGCGHQTCCGCGQDL---------------DLCPICRSFIQTRI 432 (435)
Q Consensus 385 ~l~e~~~CpICl~~~~dv~--------~~CGH~fC~~C~~~l---------------~~CPiCR~~i~~~i 432 (435)
..++...|-||+...-+-+ ..||..|-.-|+-+| -.||.|..+|.-+.
T Consensus 161 kdd~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialKm 231 (234)
T KOG3268|consen 161 KDDELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALKM 231 (234)
T ss_pred cchhhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceeec
Confidence 3345568999987655411 268877777777554 17999999987543
No 207
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=20.07 E-value=51 Score=35.88 Aligned_cols=14 Identities=36% Similarity=0.778 Sum_probs=9.6
Q ss_pred CCCcccccccCCcc
Q 013848 388 DNHVCPICLTDPKD 401 (435)
Q Consensus 388 e~~~CpICl~~~~d 401 (435)
+..-||-||+....
T Consensus 25 ~~~yCp~CL~~~p~ 38 (483)
T PF05502_consen 25 DSYYCPNCLFEVPS 38 (483)
T ss_pred ceeECccccccCCh
Confidence 34579999876544
Done!