Query 013848
Match_columns 435
No_of_seqs 381 out of 1559
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 18:14:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013848.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013848hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ea5_A Cell growth regulator w 99.2 1.6E-11 5.3E-16 96.2 5.5 50 386-435 12-63 (68)
2 2ecg_A Baculoviral IAP repeat- 99.1 6.3E-12 2.1E-16 99.6 -1.6 49 387-435 23-73 (75)
3 4ic3_A E3 ubiquitin-protein li 99.1 3.5E-11 1.2E-15 95.2 2.2 50 386-435 21-72 (74)
4 2ysl_A Tripartite motif-contai 99.0 2.6E-10 8.9E-15 88.6 5.2 51 380-430 11-69 (73)
5 2yho_A E3 ubiquitin-protein li 99.0 1.1E-10 3.7E-15 93.9 1.9 49 387-435 16-66 (79)
6 2vje_B MDM4 protein; proto-onc 98.9 8.2E-11 2.8E-15 90.5 -0.9 48 388-435 6-61 (63)
7 2d8t_A Dactylidin, ring finger 98.9 7.9E-10 2.7E-14 86.0 4.4 46 385-430 11-61 (71)
8 2vje_A E3 ubiquitin-protein li 98.9 9.7E-11 3.3E-15 90.4 -1.3 49 387-435 6-62 (64)
9 2ecn_A Ring finger protein 141 98.9 7.4E-10 2.5E-14 85.6 3.6 51 384-434 10-64 (70)
10 2ea6_A Ring finger protein 4; 98.9 6.7E-10 2.3E-14 85.0 3.1 49 383-431 9-69 (69)
11 2djb_A Polycomb group ring fin 98.9 1.1E-09 3.6E-14 85.5 4.2 51 381-431 7-63 (72)
12 1e4u_A Transcriptional repress 98.8 1.3E-09 4.5E-14 87.6 3.6 50 384-433 6-65 (78)
13 2egp_A Tripartite motif-contai 98.8 2.3E-09 7.7E-14 84.4 4.3 48 383-430 6-65 (79)
14 2ecw_A Tripartite motif-contai 98.8 3.7E-09 1.3E-13 83.7 5.6 49 382-430 12-71 (85)
15 2yur_A Retinoblastoma-binding 98.8 1.7E-09 5.8E-14 85.0 3.5 49 382-430 8-64 (74)
16 2csy_A Zinc finger protein 183 98.8 2.4E-09 8.3E-14 85.2 4.3 47 384-430 10-61 (81)
17 2ecv_A Tripartite motif-contai 98.8 5.1E-09 1.7E-13 82.9 5.9 49 382-430 12-71 (85)
18 2ecy_A TNF receptor-associated 98.8 1.7E-09 5.9E-14 82.8 2.8 48 384-431 10-63 (66)
19 3t6p_A Baculoviral IAP repeat- 98.8 1.5E-09 5.1E-14 109.7 2.5 51 385-435 291-343 (345)
20 3l11_A E3 ubiquitin-protein li 98.8 1.6E-09 5.5E-14 91.8 2.2 49 382-430 8-62 (115)
21 3ztg_A E3 ubiquitin-protein li 98.8 3.4E-09 1.2E-13 86.1 3.7 47 383-429 7-61 (92)
22 2ysj_A Tripartite motif-contai 98.7 5.1E-09 1.8E-13 79.3 4.0 45 380-424 11-63 (63)
23 2ect_A Ring finger protein 126 98.7 4.6E-09 1.6E-13 82.8 3.9 49 383-431 9-65 (78)
24 2ct2_A Tripartite motif protei 98.7 5.9E-09 2E-13 83.5 4.4 48 383-430 9-68 (88)
25 1bor_A Transcription factor PM 98.7 4.4E-09 1.5E-13 78.7 3.3 45 386-430 3-49 (56)
26 4ayc_A E3 ubiquitin-protein li 98.7 1.9E-09 6.5E-14 94.6 1.2 45 387-431 51-100 (138)
27 3ng2_A RNF4, snurf, ring finge 98.7 3.7E-09 1.3E-13 81.4 1.9 45 386-430 7-63 (71)
28 2ep4_A Ring finger protein 24; 98.7 8.2E-09 2.8E-13 80.5 3.8 51 383-433 9-67 (74)
29 1t1h_A Gspef-atpub14, armadill 98.7 6.2E-09 2.1E-13 82.0 3.0 46 385-430 4-55 (78)
30 1chc_A Equine herpes virus-1 r 98.7 7.3E-09 2.5E-13 79.4 2.6 47 387-433 3-55 (68)
31 2ecj_A Tripartite motif-contai 98.7 1.3E-08 4.4E-13 75.3 3.8 43 382-424 8-58 (58)
32 1wgm_A Ubiquitin conjugation f 98.6 2.2E-08 7.6E-13 83.6 5.0 49 382-430 15-69 (98)
33 2xeu_A Ring finger protein 4; 98.6 6.9E-09 2.4E-13 78.1 1.5 48 388-435 2-63 (64)
34 3fl2_A E3 ubiquitin-protein li 98.6 5.4E-09 1.8E-13 89.8 0.2 45 386-430 49-99 (124)
35 1iym_A EL5; ring-H2 finger, ub 98.6 2.6E-08 8.8E-13 73.2 3.9 44 386-429 2-54 (55)
36 2kiz_A E3 ubiquitin-protein li 98.6 2.4E-08 8.4E-13 76.8 3.9 48 385-432 10-65 (69)
37 3lrq_A E3 ubiquitin-protein li 98.6 5.7E-09 1.9E-13 86.8 -0.5 46 385-430 18-70 (100)
38 2kr4_A Ubiquitin conjugation f 98.6 2.9E-08 9.9E-13 80.6 3.3 47 384-430 9-60 (85)
39 2ckl_A Polycomb group ring fin 98.5 1.5E-08 5.3E-13 84.9 1.2 46 385-430 11-62 (108)
40 1g25_A CDK-activating kinase a 98.5 1.6E-08 5.4E-13 77.2 1.1 43 388-430 2-55 (65)
41 2kre_A Ubiquitin conjugation f 98.5 7.6E-08 2.6E-12 80.6 5.4 47 384-430 24-75 (100)
42 1x4j_A Ring finger protein 38; 98.5 4.3E-08 1.5E-12 76.8 3.1 45 386-430 20-72 (75)
43 4hqf_A Thrombospondin-related 98.5 6.2E-07 2.1E-11 86.4 11.4 151 93-278 21-179 (281)
44 1jm7_B BARD1, BRCA1-associated 98.5 3.9E-08 1.3E-12 83.8 2.3 46 385-430 18-67 (117)
45 2ckl_B Ubiquitin ligase protei 98.5 2.9E-08 1E-12 89.2 1.6 47 384-430 49-102 (165)
46 2ecm_A Ring finger and CHY zin 98.5 5.8E-08 2E-12 71.1 2.9 42 388-429 4-54 (55)
47 1jm7_A BRCA1, breast cancer ty 98.5 3.8E-08 1.3E-12 82.3 1.6 44 387-430 19-70 (112)
48 2l0b_A E3 ubiquitin-protein li 98.4 5.8E-08 2E-12 79.3 2.6 46 386-431 37-90 (91)
49 2y43_A E3 ubiquitin-protein li 98.4 3.2E-08 1.1E-12 81.6 1.0 45 386-430 19-69 (99)
50 3hct_A TNF receptor-associated 98.4 5.9E-08 2E-12 82.8 2.3 47 384-430 13-65 (118)
51 1z6u_A NP95-like ring finger p 98.4 5.7E-08 1.9E-12 86.9 2.2 45 387-431 76-126 (150)
52 4hqo_A Sporozoite surface prot 98.4 9.7E-07 3.3E-11 84.7 10.4 149 94-277 19-175 (266)
53 1v87_A Deltex protein 2; ring- 98.4 6.4E-08 2.2E-12 81.5 1.6 43 389-431 25-95 (114)
54 2c2l_A CHIP, carboxy terminus 98.4 1.1E-07 3.8E-12 90.7 3.4 44 387-430 206-255 (281)
55 1rmd_A RAG1; V(D)J recombinati 98.4 4E-08 1.4E-12 83.2 -0.7 46 385-430 19-70 (116)
56 2y1n_A E3 ubiquitin-protein li 98.4 1.8E-07 6.1E-12 95.8 4.0 46 388-433 331-382 (389)
57 3knv_A TNF receptor-associated 98.3 4.1E-08 1.4E-12 87.0 -1.0 45 384-428 26-76 (141)
58 2xgg_A Microneme protein 2; A/ 98.3 6.7E-06 2.3E-10 73.6 11.8 137 94-268 18-162 (178)
59 3n2n_F Anthrax toxin receptor 98.3 7.4E-06 2.5E-10 72.7 11.9 146 94-278 8-158 (185)
60 1shu_X Anthrax toxin receptor 98.2 5.1E-06 1.7E-10 73.6 10.3 147 94-278 7-155 (182)
61 2yu4_A E3 SUMO-protein ligase 98.2 4.4E-07 1.5E-11 74.7 2.7 42 386-427 4-59 (94)
62 4ap4_A E3 ubiquitin ligase RNF 98.2 2.8E-07 9.5E-12 78.5 1.4 44 387-430 5-60 (133)
63 3ibs_A Conserved hypothetical 98.2 3.9E-06 1.3E-10 76.7 9.1 139 94-268 12-150 (218)
64 1q0p_A Complement factor B; VO 98.2 2.7E-06 9.2E-11 77.7 7.5 154 93-278 15-191 (223)
65 4fx5_A VON willebrand factor t 98.2 3.9E-06 1.3E-10 87.6 9.4 151 93-277 77-230 (464)
66 3hcs_A TNF receptor-associated 98.1 5.5E-07 1.9E-11 81.1 1.5 47 384-430 13-65 (170)
67 2ecl_A Ring-box protein 2; RNF 98.1 1.8E-06 6.3E-11 69.0 4.4 43 388-430 14-76 (81)
68 2f42_A STIP1 homology and U-bo 98.1 6.2E-07 2.1E-11 82.9 1.5 44 387-430 104-153 (179)
69 4ap4_A E3 ubiquitin ligase RNF 98.0 8.2E-07 2.8E-11 75.5 1.0 44 387-430 70-125 (133)
70 1atz_A VON willebrand factor; 98.0 1.5E-05 5E-10 71.7 9.1 141 94-276 6-155 (189)
71 1n3y_A Integrin alpha-X; alpha 98.0 1.8E-06 6.3E-11 77.7 2.7 143 94-277 10-165 (198)
72 2odp_A Complement C2; C3/C5 co 98.0 9.5E-06 3.2E-10 83.9 8.2 154 93-278 9-185 (509)
73 1ijb_A VON willebrand factor; 98.0 1.3E-05 4.6E-10 73.2 8.1 144 94-276 14-166 (202)
74 4b4t_W RPN10, 26S proteasome r 98.0 4.9E-05 1.7E-09 74.3 12.2 164 91-293 3-174 (268)
75 2b2x_A Integrin alpha-1; compu 98.0 5.3E-05 1.8E-09 70.0 11.5 132 94-268 23-164 (223)
76 3htk_C E3 SUMO-protein ligase 97.9 3.2E-06 1.1E-10 82.4 2.8 46 385-430 177-232 (267)
77 1pt6_A Integrin alpha-1; cell 97.9 7E-05 2.4E-09 68.6 11.2 132 94-268 8-149 (213)
78 2x31_A Magnesium-chelatase 60 97.9 1.7E-06 6E-11 77.5 0.1 152 94-277 6-161 (189)
79 1rrk_A Complement factor B; BB 97.9 3.5E-05 1.2E-09 79.2 9.6 153 94-278 2-177 (497)
80 1mf7_A Integrin alpha M; cell 97.8 3.4E-06 1.2E-10 76.1 1.3 142 94-276 6-160 (194)
81 3hrz_D Complement factor B; se 97.8 7E-05 2.4E-09 80.8 11.0 150 93-278 243-419 (741)
82 2x5n_A SPRPN10, 26S proteasome 97.8 0.0002 6.9E-09 66.1 12.6 163 95-296 4-173 (192)
83 1v7p_C Integrin alpha-2; snake 97.8 0.00022 7.7E-09 64.6 12.1 131 94-267 7-147 (200)
84 3dpl_R Ring-box protein 1; ubi 97.7 1.3E-05 4.4E-10 67.9 2.5 42 388-429 36-100 (106)
85 1wim_A KIAA0161 protein; ring 97.7 8.7E-06 3E-10 66.5 0.8 40 388-427 4-61 (94)
86 2d8s_A Cellular modulator of i 97.6 4.1E-05 1.4E-09 61.6 4.0 47 387-433 13-73 (80)
87 4a0k_B E3 ubiquitin-protein li 97.6 1.1E-05 3.7E-10 69.7 0.3 41 389-429 48-111 (117)
88 3zqk_A VON willebrand factor; 97.4 0.00013 4.5E-09 66.4 4.7 138 94-278 22-169 (199)
89 2bay_A PRE-mRNA splicing facto 97.2 0.00013 4.5E-09 55.6 1.8 42 389-430 3-50 (61)
90 1mjn_A Integrin alpha-L; rossm 97.1 0.0011 3.8E-08 59.2 8.2 137 94-276 3-150 (179)
91 1jey_A KU70; double-strand DNA 97.1 0.0033 1.1E-07 67.5 13.3 158 88-271 32-212 (609)
92 3k6s_A Integrin alpha-X; cell 97.0 0.00052 1.8E-08 78.6 5.6 142 94-278 131-287 (1095)
93 3vk6_A E3 ubiquitin-protein li 96.9 0.00038 1.3E-08 58.5 2.7 41 391-431 3-50 (101)
94 1jey_B KU80; double-strand DNA 96.5 0.008 2.7E-07 63.9 10.2 150 89-268 4-170 (565)
95 1yvr_A RO autoantigen, 60-kDa 96.2 0.015 5.1E-07 61.3 9.5 138 94-270 369-506 (538)
96 2ct0_A Non-SMC element 1 homol 96.1 0.0065 2.2E-07 48.2 4.8 45 387-431 13-65 (74)
97 3k1l_B Fancl; UBC, ring, RWD, 95.6 0.0034 1.2E-07 63.5 1.7 45 387-431 306-374 (381)
98 2nvo_A RO sixty-related protei 95.3 0.093 3.2E-06 55.4 11.6 139 94-269 363-501 (535)
99 1vyx_A ORF K3, K3RING; zinc-bi 94.6 0.015 5E-07 44.0 2.2 44 387-430 4-59 (60)
100 2ko5_A Ring finger protein Z; 94.2 0.03 1E-06 46.4 3.4 52 383-434 22-77 (99)
101 2iue_A Pactolus I-domain; memb 90.8 0.86 2.9E-05 42.8 8.8 109 94-231 4-119 (212)
102 2jun_A Midline-1; B-BOX, TRIM, 90.7 0.092 3.2E-06 42.7 1.8 30 388-417 2-35 (101)
103 2ww8_A RRGA, cell WALL surface 88.8 2.1 7.1E-05 48.1 11.4 124 94-231 225-393 (893)
104 3fcs_B Integrin beta-3; beta p 71.7 4.6 0.00016 44.1 6.0 50 181-230 200-256 (690)
105 3nw0_A Non-structural maintena 68.9 2.3 7.7E-05 40.4 2.4 42 389-430 180-229 (238)
106 2cs3_A Protein C14ORF4, MY039 65.9 4.2 0.00014 32.9 3.0 29 388-416 14-47 (93)
107 3rag_A Uncharacterized protein 65.1 3.7 0.00013 39.3 3.1 42 216-269 9-50 (242)
108 3rag_A Uncharacterized protein 60.4 12 0.0004 35.8 5.7 90 94-213 135-228 (242)
109 1z60_A TFIIH basal transcripti 59.7 5.5 0.00019 30.1 2.6 35 390-424 16-58 (59)
110 2zet_C Melanophilin; complex, 44.6 4.3 0.00015 36.2 -0.2 39 389-427 68-117 (153)
111 3i2d_A E3 SUMO-protein ligase 42.2 14 0.00048 37.4 3.1 41 389-429 249-299 (371)
112 1z2q_A LM5-1; membrane protein 40.8 32 0.0011 27.1 4.4 29 388-416 20-53 (84)
113 1dvp_A HRS, hepatocyte growth 38.9 24 0.00083 32.5 4.0 29 388-416 160-193 (220)
114 4fo9_A E3 SUMO-protein ligase 38.0 18 0.00062 36.5 3.1 42 388-429 214-265 (360)
115 3zyq_A Hepatocyte growth facto 35.7 29 0.00098 32.3 3.9 42 389-430 164-222 (226)
116 1zbd_B Rabphilin-3A; G protein 35.2 5.2 0.00018 34.8 -1.2 39 389-427 55-107 (134)
117 1wfk_A Zinc finger, FYVE domai 34.7 23 0.00078 28.4 2.6 30 387-416 7-41 (88)
118 2jne_A Hypothetical protein YF 34.2 5.8 0.0002 33.0 -1.0 39 388-429 31-72 (101)
119 3t3p_B Integrin beta-3; integr 33.7 26 0.0009 36.5 3.6 49 182-230 201-256 (472)
120 1wfp_A Zinc finger (AN1-like) 33.1 66 0.0023 25.3 5.0 28 386-413 22-51 (74)
121 1vfy_A Phosphatidylinositol-3- 32.6 27 0.00093 26.7 2.7 27 390-416 12-43 (73)
122 1weo_A Cellulose synthase, cat 32.6 31 0.0011 28.2 3.1 41 389-429 16-69 (93)
123 2a20_A Regulating synaptic mem 32.2 6.9 0.00023 29.7 -0.8 42 386-427 6-60 (62)
124 2k16_A Transcription initiatio 30.6 28 0.00095 26.5 2.5 45 387-431 16-72 (75)
125 1wfl_A Zinc finger protein 216 29.1 80 0.0027 24.8 4.8 25 389-413 25-51 (74)
126 2yw8_A RUN and FYVE domain-con 28.8 33 0.0011 26.8 2.6 29 388-416 18-51 (82)
127 1mm2_A MI2-beta; PHD, zinc fin 28.8 46 0.0016 24.5 3.3 40 387-427 7-56 (61)
128 3m0m_A L-rhamnose isomerase; b 28.6 65 0.0022 33.1 5.5 112 147-268 52-183 (438)
129 2lri_C Autoimmune regulator; Z 28.3 97 0.0033 23.3 5.1 39 388-427 11-59 (66)
130 2l43_A N-teminal domain from h 27.8 54 0.0018 26.1 3.8 45 385-429 21-77 (88)
131 3mpx_A FYVE, rhogef and PH dom 27.7 13 0.00043 37.2 0.0 41 389-429 375-431 (434)
132 3k6s_B Integrin beta-2; cell r 27.7 34 0.0012 37.3 3.3 47 182-229 193-246 (687)
133 2e6r_A Jumonji/ARID domain-con 27.5 40 0.0014 27.1 2.9 42 386-427 13-66 (92)
134 2jmo_A Parkin; IBR, E3 ligase, 26.6 24 0.00082 27.5 1.5 22 405-427 55-76 (80)
135 1x4u_A Zinc finger, FYVE domai 26.1 34 0.0012 26.8 2.3 29 388-416 13-46 (84)
136 1joc_A EEA1, early endosomal a 25.3 28 0.00096 29.6 1.7 27 390-416 70-101 (125)
137 1wil_A KIAA1045 protein; ring 25.2 66 0.0023 26.1 3.7 32 386-417 12-46 (89)
138 2fiy_A Protein FDHE homolog; F 24.2 18 0.00061 35.7 0.3 41 387-427 180-231 (309)
139 1wg2_A Zinc finger (AN1-like) 23.2 74 0.0025 24.3 3.5 26 388-413 14-41 (64)
140 2d8v_A Zinc finger FYVE domain 23.2 36 0.0012 26.3 1.8 32 386-417 5-37 (67)
141 1weu_A Inhibitor of growth fam 23.1 2.9E+02 0.01 22.1 7.5 41 388-429 35-87 (91)
142 3t7l_A Zinc finger FYVE domain 23.1 31 0.0011 27.5 1.5 29 389-417 20-53 (90)
143 3otr_A Enolase; structural gen 20.8 1.8E+02 0.0062 30.1 7.1 144 76-262 228-381 (452)
144 2l5u_A Chromodomain-helicase-D 20.2 1E+02 0.0036 22.5 3.8 39 387-426 9-57 (61)
145 2yql_A PHD finger protein 21A; 20.2 57 0.0019 23.5 2.3 39 387-426 7-55 (56)
146 2yt5_A Metal-response element- 20.1 59 0.002 23.9 2.4 44 387-430 4-64 (66)
No 1
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=1.6e-11 Score=96.23 Aligned_cols=50 Identities=28% Similarity=0.772 Sum_probs=45.6
Q ss_pred CCCCCcccccccCCcccee-CCCCc-cchhhhhcCCCCCccccccccccccC
Q 013848 386 TSDNHVCPICLTDPKDMAF-GCGHQ-TCCGCGQDLDLCPICRSFIQTRIKLY 435 (435)
Q Consensus 386 l~e~~~CpICl~~~~dv~~-~CGH~-fC~~C~~~l~~CPiCR~~i~~~irly 435 (435)
..++..|+||++.++++++ +|||. ||..|+..+..||+||++|..++++|
T Consensus 12 ~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~CR~~i~~~~~i~ 63 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQESFALS 63 (68)
T ss_dssp CCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHCSSCTTTCCCCCCEECCC
T ss_pred CCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhcCCCCCCCCcchhceEEee
Confidence 4456899999999999665 99999 99999999999999999999999987
No 2
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=6.3e-12 Score=99.57 Aligned_cols=49 Identities=31% Similarity=0.884 Sum_probs=44.6
Q ss_pred CCCCcccccccCCccce-eCCCCc-cchhhhhcCCCCCccccccccccccC
Q 013848 387 SDNHVCPICLTDPKDMA-FGCGHQ-TCCGCGQDLDLCPICRSFIQTRIKLY 435 (435)
Q Consensus 387 ~e~~~CpICl~~~~dv~-~~CGH~-fC~~C~~~l~~CPiCR~~i~~~irly 435 (435)
+++..|+||++.+++++ ++|||. ||..|+..+..||+||.+|..++++|
T Consensus 23 ~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~ 73 (75)
T 2ecg_A 23 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKIF 73 (75)
T ss_dssp HHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHCSBCTTTCCBCCCCCBCC
T ss_pred CCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCCCCCccCCceecCcEEEe
Confidence 45578999999999955 599999 99999999999999999999999987
No 3
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.06 E-value=3.5e-11 Score=95.19 Aligned_cols=50 Identities=30% Similarity=0.824 Sum_probs=45.1
Q ss_pred CCCCCcccccccCCccce-eCCCCc-cchhhhhcCCCCCccccccccccccC
Q 013848 386 TSDNHVCPICLTDPKDMA-FGCGHQ-TCCGCGQDLDLCPICRSFIQTRIKLY 435 (435)
Q Consensus 386 l~e~~~CpICl~~~~dv~-~~CGH~-fC~~C~~~l~~CPiCR~~i~~~irly 435 (435)
++++..|+||++.+.+.+ ++|||. ||..|+..+..||+||++|..++++|
T Consensus 21 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~ 72 (74)
T 4ic3_A 21 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKIL 72 (74)
T ss_dssp HHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTCSBCTTTCCBCSEEEECB
T ss_pred CccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcCccCCCcCcCccCcEEEe
Confidence 345689999999999954 599999 99999999999999999999999887
No 4
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=2.6e-10 Score=88.65 Aligned_cols=51 Identities=25% Similarity=0.776 Sum_probs=42.5
Q ss_pred CCCCCCCCCCCcccccccCCcc-ceeCCCCccchhhhhcCC-------CCCcccccccc
Q 013848 380 APPASSTSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDLD-------LCPICRSFIQT 430 (435)
Q Consensus 380 ~~~~~~l~e~~~CpICl~~~~d-v~~~CGH~fC~~C~~~l~-------~CPiCR~~i~~ 430 (435)
......++++..|+||++.+.+ ++++|||.||..|+..+. .||+||+++..
T Consensus 11 ~~~~~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 11 GQFVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred HHHHHhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 3344567788999999999999 566999999999998664 69999999865
No 5
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.98 E-value=1.1e-10 Score=93.93 Aligned_cols=49 Identities=29% Similarity=0.819 Sum_probs=44.1
Q ss_pred CCCCcccccccCCccce-eCCCCc-cchhhhhcCCCCCccccccccccccC
Q 013848 387 SDNHVCPICLTDPKDMA-FGCGHQ-TCCGCGQDLDLCPICRSFIQTRIKLY 435 (435)
Q Consensus 387 ~e~~~CpICl~~~~dv~-~~CGH~-fC~~C~~~l~~CPiCR~~i~~~irly 435 (435)
+++..|+||++.+++++ ++|||. ||..|+..+..||+||.+|..++++|
T Consensus 16 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~ 66 (79)
T 2yho_A 16 KEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRSRVEHVQHVY 66 (79)
T ss_dssp HHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCSBCTTTCCBCCEEEECB
T ss_pred CCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcCcCCCCCchhhCeEEEE
Confidence 34578999999999955 599999 99999999999999999999998876
No 6
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.92 E-value=8.2e-11 Score=90.53 Aligned_cols=48 Identities=38% Similarity=0.805 Sum_probs=42.3
Q ss_pred CCCcccccccCCcc-cee--CCCCc-cchhhhhcCC----CCCccccccccccccC
Q 013848 388 DNHVCPICLTDPKD-MAF--GCGHQ-TCCGCGQDLD----LCPICRSFIQTRIKLY 435 (435)
Q Consensus 388 e~~~CpICl~~~~d-v~~--~CGH~-fC~~C~~~l~----~CPiCR~~i~~~irly 435 (435)
.+..|+||++.+++ +++ +|||. +|.+|+.++. .||+||++|..++++|
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~ 61 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVF 61 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEEEEEE
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhceEEEe
Confidence 35689999999998 444 99999 8999999876 8999999999999887
No 7
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=7.9e-10 Score=86.05 Aligned_cols=46 Identities=26% Similarity=0.592 Sum_probs=39.3
Q ss_pred CCCCCCcccccccCCcc-ceeCCCCccchhhhhcC----CCCCcccccccc
Q 013848 385 STSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL----DLCPICRSFIQT 430 (435)
Q Consensus 385 ~l~e~~~CpICl~~~~d-v~~~CGH~fC~~C~~~l----~~CPiCR~~i~~ 430 (435)
...++..|+||++.+.+ +.++|||.||..|+..| ..||+||..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 11 PSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred cCCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 34566899999999999 56799999999999877 379999999864
No 8
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.89 E-value=9.7e-11 Score=90.38 Aligned_cols=49 Identities=35% Similarity=0.752 Sum_probs=42.2
Q ss_pred CCCCcccccccCCccce-e--CCCCc-cchhhhhcCC----CCCccccccccccccC
Q 013848 387 SDNHVCPICLTDPKDMA-F--GCGHQ-TCCGCGQDLD----LCPICRSFIQTRIKLY 435 (435)
Q Consensus 387 ~e~~~CpICl~~~~dv~-~--~CGH~-fC~~C~~~l~----~CPiCR~~i~~~irly 435 (435)
+++..|+||++.+++++ + +|||. +|.+|+..+. .||+||++|..++++|
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~ 62 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTY 62 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEEEEEE
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhceEeee
Confidence 35578999999999944 4 99999 7999998764 5999999999999887
No 9
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=7.4e-10 Score=85.60 Aligned_cols=51 Identities=27% Similarity=0.636 Sum_probs=42.8
Q ss_pred CCCCCCCcccccccCCccceeCCCCccchhhhhcC----CCCCcccccccccccc
Q 013848 384 SSTSDNHVCPICLTDPKDMAFGCGHQTCCGCGQDL----DLCPICRSFIQTRIKL 434 (435)
Q Consensus 384 ~~l~e~~~CpICl~~~~dv~~~CGH~fC~~C~~~l----~~CPiCR~~i~~~irl 434 (435)
..+.+...|+||++.+.+++++|||.||..|+..| ..||+||.++.....+
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 64 (70)
T 2ecn_A 10 KQLTDEEECCICMDGRADLILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANES 64 (70)
T ss_dssp CCCCCCCCCSSSCCSCCSEEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCCCC
T ss_pred hcCCCCCCCeeCCcCccCcccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCCcc
Confidence 34567789999999999966799999999999877 4799999999876544
No 10
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.88 E-value=6.7e-10 Score=84.96 Aligned_cols=49 Identities=33% Similarity=0.794 Sum_probs=40.0
Q ss_pred CCCCCCCCcccccccCCcc--------ceeCCCCccchhhhhcC----CCCCccccccccc
Q 013848 383 ASSTSDNHVCPICLTDPKD--------MAFGCGHQTCCGCGQDL----DLCPICRSFIQTR 431 (435)
Q Consensus 383 ~~~l~e~~~CpICl~~~~d--------v~~~CGH~fC~~C~~~l----~~CPiCR~~i~~~ 431 (435)
...+.+...|+||++.+.+ ++++|||.||..|+..| ..||+||.++..+
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~r 69 (69)
T 2ea6_A 9 GLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 69 (69)
T ss_dssp CCCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCCC
T ss_pred ccCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCcC
Confidence 4455678899999998766 34599999999999876 4899999988753
No 11
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.88 E-value=1.1e-09 Score=85.53 Aligned_cols=51 Identities=24% Similarity=0.477 Sum_probs=42.6
Q ss_pred CCCCCCCCCCcccccccCCcc-cee-CCCCccchhhhhcC----CCCCccccccccc
Q 013848 381 PPASSTSDNHVCPICLTDPKD-MAF-GCGHQTCCGCGQDL----DLCPICRSFIQTR 431 (435)
Q Consensus 381 ~~~~~l~e~~~CpICl~~~~d-v~~-~CGH~fC~~C~~~l----~~CPiCR~~i~~~ 431 (435)
.....++++..|+||++.+.+ +++ +|||.||..|+..| ..||+||..+...
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 7 GNLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp CCCCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred hhHhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcc
Confidence 344566778999999999998 566 99999999999766 4899999998754
No 12
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.84 E-value=1.3e-09 Score=87.60 Aligned_cols=50 Identities=32% Similarity=0.746 Sum_probs=39.7
Q ss_pred CCCCCCCcccccccCCc--ccee-C--CCCccchhhhhcCC-----CCCccccccccccc
Q 013848 384 SSTSDNHVCPICLTDPK--DMAF-G--CGHQTCCGCGQDLD-----LCPICRSFIQTRIK 433 (435)
Q Consensus 384 ~~l~e~~~CpICl~~~~--dv~~-~--CGH~fC~~C~~~l~-----~CPiCR~~i~~~ir 433 (435)
..++++..|+||++.+. ++.+ + |||.||..|+.+++ .||.||+++.....
T Consensus 6 ~~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 6 DAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred cccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 34678899999999874 4443 5 99999999998663 79999999976543
No 13
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.82 E-value=2.3e-09 Score=84.38 Aligned_cols=48 Identities=27% Similarity=0.721 Sum_probs=40.7
Q ss_pred CCCCCCCCcccccccCCcc-ceeCCCCccchhhhhcC-----------CCCCcccccccc
Q 013848 383 ASSTSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL-----------DLCPICRSFIQT 430 (435)
Q Consensus 383 ~~~l~e~~~CpICl~~~~d-v~~~CGH~fC~~C~~~l-----------~~CPiCR~~i~~ 430 (435)
...++++..|+||++.+.+ ++++|||.||..|+..+ ..||+||..+..
T Consensus 6 ~~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 6 SGNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp SCCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred HhhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 4456788999999999999 66799999999999853 379999998864
No 14
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.82 E-value=3.7e-09 Score=83.68 Aligned_cols=49 Identities=29% Similarity=0.611 Sum_probs=41.1
Q ss_pred CCCCCCCCCcccccccCCcc-ceeCCCCccchhhhhc----------CCCCCcccccccc
Q 013848 382 PASSTSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQD----------LDLCPICRSFIQT 430 (435)
Q Consensus 382 ~~~~l~e~~~CpICl~~~~d-v~~~CGH~fC~~C~~~----------l~~CPiCR~~i~~ 430 (435)
....++++..|+||++.+.+ ++++|||.||..|+.. ...||+||..+..
T Consensus 12 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 12 VLEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CCCCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred HHHhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 34556788999999999999 5669999999999975 4589999998864
No 15
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.82 E-value=1.7e-09 Score=85.02 Aligned_cols=49 Identities=24% Similarity=0.566 Sum_probs=40.7
Q ss_pred CCCCCCCCCcccccccCCcc-ceeC-CCCccchhhhhcC------CCCCcccccccc
Q 013848 382 PASSTSDNHVCPICLTDPKD-MAFG-CGHQTCCGCGQDL------DLCPICRSFIQT 430 (435)
Q Consensus 382 ~~~~l~e~~~CpICl~~~~d-v~~~-CGH~fC~~C~~~l------~~CPiCR~~i~~ 430 (435)
....+.++..|+||++.+.+ ++++ |||.||..|+..+ ..||+||+++..
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 8 EDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp CCCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred ccccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 34556778999999999999 6678 9999999999765 379999998643
No 16
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.81 E-value=2.4e-09 Score=85.23 Aligned_cols=47 Identities=21% Similarity=0.425 Sum_probs=39.6
Q ss_pred CCCCCCCcccccccCCcc-ceeCCCCccchhhhhcC----CCCCcccccccc
Q 013848 384 SSTSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL----DLCPICRSFIQT 430 (435)
Q Consensus 384 ~~l~e~~~CpICl~~~~d-v~~~CGH~fC~~C~~~l----~~CPiCR~~i~~ 430 (435)
...++...|+||++.+.+ ++++|||.||..|+..| ..||+||.++..
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (81)
T 2csy_A 10 EEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTGG 61 (81)
T ss_dssp SCCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCCS
T ss_pred ccCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCccccc
Confidence 345667899999999999 55699999999999876 479999999863
No 17
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.80 E-value=5.1e-09 Score=82.88 Aligned_cols=49 Identities=31% Similarity=0.728 Sum_probs=41.2
Q ss_pred CCCCCCCCCcccccccCCcc-ceeCCCCccchhhhhc----------CCCCCcccccccc
Q 013848 382 PASSTSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQD----------LDLCPICRSFIQT 430 (435)
Q Consensus 382 ~~~~l~e~~~CpICl~~~~d-v~~~CGH~fC~~C~~~----------l~~CPiCR~~i~~ 430 (435)
....+++...|+||++.+.+ ++++|||.||..|+.. ...||+||..+..
T Consensus 12 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 12 ILVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred HHHHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 34556788999999999999 5679999999999975 3589999998864
No 18
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.80 E-value=1.7e-09 Score=82.84 Aligned_cols=48 Identities=25% Similarity=0.508 Sum_probs=40.5
Q ss_pred CCCCCCCcccccccCCcc-ceeCCCCccchhhhhcC-----CCCCccccccccc
Q 013848 384 SSTSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL-----DLCPICRSFIQTR 431 (435)
Q Consensus 384 ~~l~e~~~CpICl~~~~d-v~~~CGH~fC~~C~~~l-----~~CPiCR~~i~~~ 431 (435)
..++++..|+||++.+++ +.++|||.||..|+.++ ..||+||.++...
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 10 KTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred hcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 445678899999999998 55799999999999865 3799999998754
No 19
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.78 E-value=1.5e-09 Score=109.74 Aligned_cols=51 Identities=27% Similarity=0.851 Sum_probs=46.3
Q ss_pred CCCCCCcccccccCCccce-eCCCCc-cchhhhhcCCCCCccccccccccccC
Q 013848 385 STSDNHVCPICLTDPKDMA-FGCGHQ-TCCGCGQDLDLCPICRSFIQTRIKLY 435 (435)
Q Consensus 385 ~l~e~~~CpICl~~~~dv~-~~CGH~-fC~~C~~~l~~CPiCR~~i~~~irly 435 (435)
.++++..|+||++.+.+.+ ++|||. ||..|+..+..||+||.+|..++++|
T Consensus 291 ~l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~~~CP~CR~~i~~~~~i~ 343 (345)
T 3t6p_A 291 RLQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSLRKCPICRGIIKGTVRTF 343 (345)
T ss_dssp HHHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGCSBCTTTCCBCCEEEECC
T ss_pred hCcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcCCcCCCCCCCccCeEEee
Confidence 3456789999999999955 599999 99999999999999999999999987
No 20
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.78 E-value=1.6e-09 Score=91.80 Aligned_cols=49 Identities=27% Similarity=0.607 Sum_probs=40.9
Q ss_pred CCCCCCCCCcccccccCCcc-ceeCCCCccchhhhhcCC-----CCCcccccccc
Q 013848 382 PASSTSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDLD-----LCPICRSFIQT 430 (435)
Q Consensus 382 ~~~~l~e~~~CpICl~~~~d-v~~~CGH~fC~~C~~~l~-----~CPiCR~~i~~ 430 (435)
......++..|+||++.+.+ ++++|||.||..|+..+. .||+||..+..
T Consensus 8 ~~~~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 8 DAIPSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp TCCCCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred cccCCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 34455677899999999999 667999999999998773 79999998753
No 21
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.76 E-value=3.4e-09 Score=86.07 Aligned_cols=47 Identities=26% Similarity=0.583 Sum_probs=39.8
Q ss_pred CCCCCCCCcccccccCCcc-ceeC-CCCccchhhhhcC------CCCCccccccc
Q 013848 383 ASSTSDNHVCPICLTDPKD-MAFG-CGHQTCCGCGQDL------DLCPICRSFIQ 429 (435)
Q Consensus 383 ~~~l~e~~~CpICl~~~~d-v~~~-CGH~fC~~C~~~l------~~CPiCR~~i~ 429 (435)
...++++..|+||++.+.+ ++++ |||.||..|+..+ ..||+||.++.
T Consensus 7 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 7 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 3456788999999999999 6678 9999999999765 38999999873
No 22
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.75 E-value=5.1e-09 Score=79.33 Aligned_cols=45 Identities=29% Similarity=0.800 Sum_probs=37.1
Q ss_pred CCCCCCCCCCCcccccccCCcc-ceeCCCCccchhhhhcC-------CCCCcc
Q 013848 380 APPASSTSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL-------DLCPIC 424 (435)
Q Consensus 380 ~~~~~~l~e~~~CpICl~~~~d-v~~~CGH~fC~~C~~~l-------~~CPiC 424 (435)
......++++..|+||++.+.+ ++++|||.||..|+.++ ..||+|
T Consensus 11 ~~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 11 GQFVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HHHHHhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3344567788999999999999 56699999999999755 279998
No 23
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.75 E-value=4.6e-09 Score=82.75 Aligned_cols=49 Identities=24% Similarity=0.547 Sum_probs=38.9
Q ss_pred CCCCCCCCcccccccCCcc----ceeCCCCccchhhhhcC----CCCCccccccccc
Q 013848 383 ASSTSDNHVCPICLTDPKD----MAFGCGHQTCCGCGQDL----DLCPICRSFIQTR 431 (435)
Q Consensus 383 ~~~l~e~~~CpICl~~~~d----v~~~CGH~fC~~C~~~l----~~CPiCR~~i~~~ 431 (435)
.....++..|+||++.+.+ .+++|||.||..|+..| ..||+||..+...
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 9 EEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp CTTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred cccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCc
Confidence 3445667899999998764 23499999999999866 4799999998753
No 24
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.74 E-value=5.9e-09 Score=83.45 Aligned_cols=48 Identities=27% Similarity=0.715 Sum_probs=39.7
Q ss_pred CCCCCCCCcccccccCCcc----ce-eCCCCccchhhhhcC-------CCCCcccccccc
Q 013848 383 ASSTSDNHVCPICLTDPKD----MA-FGCGHQTCCGCGQDL-------DLCPICRSFIQT 430 (435)
Q Consensus 383 ~~~l~e~~~CpICl~~~~d----v~-~~CGH~fC~~C~~~l-------~~CPiCR~~i~~ 430 (435)
...+++...|+||++.+.+ .+ ++|||.||..|+..| ..||+||..+..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 9 LDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred hhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 4456778899999999887 44 499999999999865 479999998754
No 25
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.74 E-value=4.4e-09 Score=78.69 Aligned_cols=45 Identities=27% Similarity=0.546 Sum_probs=38.8
Q ss_pred CCCCCcccccccCCcc-ceeCCCCccchhhhhcC-CCCCcccccccc
Q 013848 386 TSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL-DLCPICRSFIQT 430 (435)
Q Consensus 386 l~e~~~CpICl~~~~d-v~~~CGH~fC~~C~~~l-~~CPiCR~~i~~ 430 (435)
..++..|+||++.+.+ ++++|||.||..|+..+ ..||+||+.+..
T Consensus 3 e~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 3 EFQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEASGMQCPICQAPWPL 49 (56)
T ss_dssp SCCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSSSSSCSSCCSSSSC
T ss_pred cccCCCceEeCCccCCeEEcCCCCcccHHHHccCCCCCCcCCcEeec
Confidence 3567899999999999 66799999999999876 489999998864
No 26
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.73 E-value=1.9e-09 Score=94.64 Aligned_cols=45 Identities=29% Similarity=0.682 Sum_probs=38.3
Q ss_pred CCCCcccccccCCcc-ceeCCCCccchhhhhcC----CCCCccccccccc
Q 013848 387 SDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL----DLCPICRSFIQTR 431 (435)
Q Consensus 387 ~e~~~CpICl~~~~d-v~~~CGH~fC~~C~~~l----~~CPiCR~~i~~~ 431 (435)
+++..|+||++.+.+ ++++|||.||..|+..| ..||+||.++..+
T Consensus 51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred cccCCCcccCcccCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 345789999999999 56699999999999876 3799999998754
No 27
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.70 E-value=3.7e-09 Score=81.45 Aligned_cols=45 Identities=36% Similarity=0.857 Sum_probs=37.4
Q ss_pred CCCCCcccccccCCcc--------ceeCCCCccchhhhhcC----CCCCcccccccc
Q 013848 386 TSDNHVCPICLTDPKD--------MAFGCGHQTCCGCGQDL----DLCPICRSFIQT 430 (435)
Q Consensus 386 l~e~~~CpICl~~~~d--------v~~~CGH~fC~~C~~~l----~~CPiCR~~i~~ 430 (435)
.+++..|+||++.+.+ +.++|||.||..|+..| ..||+||.++..
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccCh
Confidence 3567899999998766 34599999999999866 489999999864
No 28
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.70 E-value=8.2e-09 Score=80.53 Aligned_cols=51 Identities=22% Similarity=0.469 Sum_probs=40.4
Q ss_pred CCCCCCCCcccccccCCcc----ceeCCCCccchhhhhcC----CCCCccccccccccc
Q 013848 383 ASSTSDNHVCPICLTDPKD----MAFGCGHQTCCGCGQDL----DLCPICRSFIQTRIK 433 (435)
Q Consensus 383 ~~~l~e~~~CpICl~~~~d----v~~~CGH~fC~~C~~~l----~~CPiCR~~i~~~ir 433 (435)
...+.++..|+||++.+.+ .+++|||.||..|+..| ..||+||.++.....
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (74)
T 2ep4_A 9 VKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQ 67 (74)
T ss_dssp CCCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCCS
T ss_pred cccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccccccc
Confidence 3455677899999998765 23499999999999876 479999999876543
No 29
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.69 E-value=6.2e-09 Score=82.02 Aligned_cols=46 Identities=22% Similarity=0.312 Sum_probs=39.4
Q ss_pred CCCCCCcccccccCCcc-ceeCCCCccchhhhhcC-----CCCCcccccccc
Q 013848 385 STSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL-----DLCPICRSFIQT 430 (435)
Q Consensus 385 ~l~e~~~CpICl~~~~d-v~~~CGH~fC~~C~~~l-----~~CPiCR~~i~~ 430 (435)
.+.++..|+||++.+.+ ++++|||.||..|+.++ ..||+||.++..
T Consensus 4 ~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 4 EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp CCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred CCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 45678999999999999 66799999999999754 479999998864
No 30
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.67 E-value=7.3e-09 Score=79.40 Aligned_cols=47 Identities=30% Similarity=0.779 Sum_probs=39.0
Q ss_pred CCCCcccccccCCcc-ce-eCCCCccchhhhhcC----CCCCccccccccccc
Q 013848 387 SDNHVCPICLTDPKD-MA-FGCGHQTCCGCGQDL----DLCPICRSFIQTRIK 433 (435)
Q Consensus 387 ~e~~~CpICl~~~~d-v~-~~CGH~fC~~C~~~l----~~CPiCR~~i~~~ir 433 (435)
+++..|+||++.+.+ ++ ++|||.||..|+..| ..||+||.++...++
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 55 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESVVH 55 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCCEEC
T ss_pred CCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHhhhh
Confidence 356789999999988 34 599999999999765 479999999887654
No 31
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.66 E-value=1.3e-08 Score=75.34 Aligned_cols=43 Identities=28% Similarity=0.715 Sum_probs=35.9
Q ss_pred CCCCCCCCCcccccccCCcc-ceeCCCCccchhhhhcC-------CCCCcc
Q 013848 382 PASSTSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL-------DLCPIC 424 (435)
Q Consensus 382 ~~~~l~e~~~CpICl~~~~d-v~~~CGH~fC~~C~~~l-------~~CPiC 424 (435)
....++++..|+||++.+++ ++++|||.||..|+..+ ..||+|
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 8 ALENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSSCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred HhhccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 34456678899999999999 56799999999999866 379988
No 32
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.63 E-value=2.2e-08 Score=83.61 Aligned_cols=49 Identities=16% Similarity=0.021 Sum_probs=41.7
Q ss_pred CCCCCCCCCcccccccCCcc-ceeCCC-CccchhhhhcCC----CCCcccccccc
Q 013848 382 PASSTSDNHVCPICLTDPKD-MAFGCG-HQTCCGCGQDLD----LCPICRSFIQT 430 (435)
Q Consensus 382 ~~~~l~e~~~CpICl~~~~d-v~~~CG-H~fC~~C~~~l~----~CPiCR~~i~~ 430 (435)
....+.++..||||++.+++ |+++|| |.||..|+..+. .||+||+++..
T Consensus 15 ~~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 15 TYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp CCCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred hhhcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 34456778999999999999 667999 999999998764 79999998864
No 33
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.63 E-value=6.9e-09 Score=78.08 Aligned_cols=48 Identities=33% Similarity=0.808 Sum_probs=38.4
Q ss_pred CCCcccccccCCcc--------ceeCCCCccchhhhhcC----CCCCcccccccc--ccccC
Q 013848 388 DNHVCPICLTDPKD--------MAFGCGHQTCCGCGQDL----DLCPICRSFIQT--RIKLY 435 (435)
Q Consensus 388 e~~~CpICl~~~~d--------v~~~CGH~fC~~C~~~l----~~CPiCR~~i~~--~irly 435 (435)
++..|+||++.+.+ +.++|||.||..|+.+| ..||+||.++.. ..++|
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 63 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 63 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCEEECC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccceeeee
Confidence 45789999998765 34599999999999866 489999999874 44444
No 34
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.60 E-value=5.4e-09 Score=89.80 Aligned_cols=45 Identities=22% Similarity=0.462 Sum_probs=38.5
Q ss_pred CCCCCcccccccCCcc-ceeCCCCccchhhhhcC-----CCCCcccccccc
Q 013848 386 TSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL-----DLCPICRSFIQT 430 (435)
Q Consensus 386 l~e~~~CpICl~~~~d-v~~~CGH~fC~~C~~~l-----~~CPiCR~~i~~ 430 (435)
++++..|+||++.+.+ ++++|||.||..|+..+ ..||+||.++..
T Consensus 49 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 49 VEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 3456899999999999 56799999999999755 389999999865
No 35
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.60 E-value=2.6e-08 Score=73.16 Aligned_cols=44 Identities=30% Similarity=0.713 Sum_probs=36.0
Q ss_pred CCCCCcccccccCCcc----ceeC-CCCccchhhhhcC----CCCCccccccc
Q 013848 386 TSDNHVCPICLTDPKD----MAFG-CGHQTCCGCGQDL----DLCPICRSFIQ 429 (435)
Q Consensus 386 l~e~~~CpICl~~~~d----v~~~-CGH~fC~~C~~~l----~~CPiCR~~i~ 429 (435)
++++..|+||++.+.+ +.++ |||.||..|+..| ..||+||.++.
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 3567799999998876 3455 9999999999876 37999998764
No 36
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.60 E-value=2.4e-08 Score=76.76 Aligned_cols=48 Identities=27% Similarity=0.584 Sum_probs=38.4
Q ss_pred CCCCCCcccccccCCcc----ceeCCCCccchhhhhcC----CCCCcccccccccc
Q 013848 385 STSDNHVCPICLTDPKD----MAFGCGHQTCCGCGQDL----DLCPICRSFIQTRI 432 (435)
Q Consensus 385 ~l~e~~~CpICl~~~~d----v~~~CGH~fC~~C~~~l----~~CPiCR~~i~~~i 432 (435)
...++..|+||++.+.. +.++|||.||..|+..| ..||+||..+...+
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQL 65 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCcC
Confidence 34566799999987643 34699999999999876 47999999987654
No 37
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.57 E-value=5.7e-09 Score=86.82 Aligned_cols=46 Identities=28% Similarity=0.625 Sum_probs=39.3
Q ss_pred CCCCCCcccccccCCcc-ce-eCCCCccchhhhhcC-----CCCCcccccccc
Q 013848 385 STSDNHVCPICLTDPKD-MA-FGCGHQTCCGCGQDL-----DLCPICRSFIQT 430 (435)
Q Consensus 385 ~l~e~~~CpICl~~~~d-v~-~~CGH~fC~~C~~~l-----~~CPiCR~~i~~ 430 (435)
.++++..|+||++.+.+ +. ++|||.||..|+..| ..||+||.++..
T Consensus 18 ~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 18 SIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 34567899999999999 66 699999999999866 489999998854
No 38
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.55 E-value=2.9e-08 Score=80.56 Aligned_cols=47 Identities=17% Similarity=0.091 Sum_probs=40.6
Q ss_pred CCCCCCCcccccccCCcc-ceeCCCCccchhhhhcC----CCCCcccccccc
Q 013848 384 SSTSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL----DLCPICRSFIQT 430 (435)
Q Consensus 384 ~~l~e~~~CpICl~~~~d-v~~~CGH~fC~~C~~~l----~~CPiCR~~i~~ 430 (435)
..+.++..|+||++.+++ ++++|||.||..|+..+ ..||+||+++..
T Consensus 9 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 9 SDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp TTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred hcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 345678999999999999 66799999999999866 489999998864
No 39
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.53 E-value=1.5e-08 Score=84.90 Aligned_cols=46 Identities=24% Similarity=0.538 Sum_probs=39.7
Q ss_pred CCCCCCcccccccCCcc-cee-CCCCccchhhhhcC----CCCCcccccccc
Q 013848 385 STSDNHVCPICLTDPKD-MAF-GCGHQTCCGCGQDL----DLCPICRSFIQT 430 (435)
Q Consensus 385 ~l~e~~~CpICl~~~~d-v~~-~CGH~fC~~C~~~l----~~CPiCR~~i~~ 430 (435)
.++++..|+||++.+.+ +++ +|||.||..|+..+ ..||+||..+..
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 11 ELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp HHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred ccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 34567899999999999 666 99999999999876 479999999864
No 40
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.53 E-value=1.6e-08 Score=77.18 Aligned_cols=43 Identities=33% Similarity=0.728 Sum_probs=35.0
Q ss_pred CCCccccccc-CCccc-----eeCCCCccchhhhhcC-----CCCCcccccccc
Q 013848 388 DNHVCPICLT-DPKDM-----AFGCGHQTCCGCGQDL-----DLCPICRSFIQT 430 (435)
Q Consensus 388 e~~~CpICl~-~~~dv-----~~~CGH~fC~~C~~~l-----~~CPiCR~~i~~ 430 (435)
++..|+||++ .+.+. +++|||.||..|+.++ ..||+||.++..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 4578999999 55552 3599999999999876 479999999864
No 41
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.53 E-value=7.6e-08 Score=80.64 Aligned_cols=47 Identities=17% Similarity=0.038 Sum_probs=40.7
Q ss_pred CCCCCCCcccccccCCcc-ceeCCCCccchhhhhcCC----CCCcccccccc
Q 013848 384 SSTSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDLD----LCPICRSFIQT 430 (435)
Q Consensus 384 ~~l~e~~~CpICl~~~~d-v~~~CGH~fC~~C~~~l~----~CPiCR~~i~~ 430 (435)
..+.++..||||++.+++ ++++|||.||..|+..+. .||+||+++..
T Consensus 24 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 24 SDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp SSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred ccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 345678999999999999 667999999999998764 79999998864
No 42
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.51 E-value=4.3e-08 Score=76.82 Aligned_cols=45 Identities=27% Similarity=0.675 Sum_probs=36.9
Q ss_pred CCCCCcccccccCCcc----ceeCCCCccchhhhhcC----CCCCcccccccc
Q 013848 386 TSDNHVCPICLTDPKD----MAFGCGHQTCCGCGQDL----DLCPICRSFIQT 430 (435)
Q Consensus 386 l~e~~~CpICl~~~~d----v~~~CGH~fC~~C~~~l----~~CPiCR~~i~~ 430 (435)
..++..|+||++.+.+ +.++|||.||..|+..| ..||+||..+..
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 4566799999988765 34599999999999876 489999998864
No 43
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=98.49 E-value=6.2e-07 Score=86.39 Aligned_cols=151 Identities=17% Similarity=0.198 Sum_probs=104.3
Q ss_pred eeceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHH-HHHHHHHhhcccccCC---CCccceeeeCCCCCCCCcccccC
Q 013848 93 SSNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPY-EQAISIIGKTLSSFDE---DNLIPCFGFGDASTHDQEVFSFY 168 (435)
Q Consensus 93 ~~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Y-q~AI~~Ig~vl~~yD~---D~~ip~fGFGa~~~~~~~vF~~~ 168 (435)
.+++++.||-|+|++. ..+ +++...+..++..|+. +-.|-++.|+.... .+|.|+
T Consensus 21 ~~div~vlD~SgSM~~------------------~~~~~~~k~~~~~~v~~l~~~~~~~rvglv~Fs~~~~---~~~~l~ 79 (281)
T 4hqf_A 21 EVDLYLLMDGSGSIRR------------------HNWVNHAVPLAMKLIQQLNLNDNAIHLYASVFSNNAR---EIIRLH 79 (281)
T ss_dssp CEEEEEEEECCCCSST------------------HHHHHHHHHHHHHHHTTCCCCTTSEEEEEEEEETTEE---EEEEEC
T ss_pred ceeEEEEEeCCCCcCH------------------HHHHHHHHHHHHHHHHHhccCCCCcEEEEEEcCCCce---EEEEcc
Confidence 4789999999999952 234 6666666667777665 56799999987542 345554
Q ss_pred CCCCccCCHHHHHHHHHHhcCcccccCCCChHHHHHHHHHHHHhcC---CceEEEEEEeCCcccccCCcccCccchhHHH
Q 013848 169 PDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSG---GQYHVLVIIADGQVTRSVDTEHGQLSSQEKK 245 (435)
Q Consensus 169 ~~~~~~~G~~gvl~~Yr~~~~~v~l~GPT~fapII~~a~~~~~~~~---~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~ 245 (435)
.... ...+.++++-.++.......|-|+....|+.|.+.....+ +.-.++|+||||..+| ...
T Consensus 80 ~~~~--~~~~~l~~~i~~l~~~~~~~G~T~~~~aL~~a~~~l~~~~~r~~~~~~iillTDG~~~d------------~~~ 145 (281)
T 4hqf_A 80 SDAS--KNKEKALIIIKSLLSTNLPYGKTSLTDALLQVRKHLNDRINRENANQLVVILTDGIPDS------------IQD 145 (281)
T ss_dssp SSCS--SCHHHHHHHHHHHHHTTGGGCSCCHHHHHHHHHHHHHTSCCCTTCEEEEEEEESSCCSC------------HHH
T ss_pred ccCc--cCHHHHHHHHHHHhhccCCCCCccHHHHHHHHHHHHHhccCCCCCCEEEEEEecCCCCC------------cHH
Confidence 4321 2345565554444334456789999999999988766543 2468899999999875 345
Q ss_pred HHHHHHHhcCCCeEEEEEecCCC-CCCcccccCC
Q 013848 246 TVEAIVKASEYPLSIILVGVGDG-PWDMMREFDD 278 (435)
Q Consensus 246 T~~aIv~AS~~PLSIIiVGVGd~-~f~~m~~lDd 278 (435)
..+++.++-..-+-|..||||+. +.+.|+.+-+
T Consensus 146 ~~~~~~~l~~~gv~i~~igiG~~~~~~~L~~iA~ 179 (281)
T 4hqf_A 146 SLKESRKLSDRGVKIAVFGIGQGINVAFNRFLVG 179 (281)
T ss_dssp HHHHHHHHHHTTCEEEEEEESSSCCHHHHHHHTT
T ss_pred HHHHHHHHHHCCCEEEEEeCCCccCHHHHHhhhC
Confidence 56666666677899999999985 5555666643
No 44
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.48 E-value=3.9e-08 Score=83.79 Aligned_cols=46 Identities=24% Similarity=0.551 Sum_probs=39.9
Q ss_pred CCCCCCcccccccCCcc-cee-CCCCccchhhhhcCC--CCCcccccccc
Q 013848 385 STSDNHVCPICLTDPKD-MAF-GCGHQTCCGCGQDLD--LCPICRSFIQT 430 (435)
Q Consensus 385 ~l~e~~~CpICl~~~~d-v~~-~CGH~fC~~C~~~l~--~CPiCR~~i~~ 430 (435)
.++++..|+||++.+.+ +++ +|||.||..|+..+. .||+||.++..
T Consensus 18 ~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 18 RLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAWI 67 (117)
T ss_dssp HHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTTTBCSSSCCBCSC
T ss_pred hchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhcCCCcCCCCcCcc
Confidence 44677899999999999 667 999999999999884 79999998853
No 45
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.48 E-value=2.9e-08 Score=89.23 Aligned_cols=47 Identities=34% Similarity=0.728 Sum_probs=38.8
Q ss_pred CCCCCCCcccccccCCcc-cee-CCCCccchhhhhcC-----CCCCcccccccc
Q 013848 384 SSTSDNHVCPICLTDPKD-MAF-GCGHQTCCGCGQDL-----DLCPICRSFIQT 430 (435)
Q Consensus 384 ~~l~e~~~CpICl~~~~d-v~~-~CGH~fC~~C~~~l-----~~CPiCR~~i~~ 430 (435)
..+.+...|+||++.+.+ +.+ +|||.||..|+..| ..||+||.++..
T Consensus 49 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 49 RSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp -CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred hhCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 345567899999999999 566 99999999999865 369999998853
No 46
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.48 E-value=5.8e-08 Score=71.14 Aligned_cols=42 Identities=31% Similarity=0.731 Sum_probs=34.8
Q ss_pred CCCcccccccCCcc----ce-eCCCCccchhhhhcC----CCCCccccccc
Q 013848 388 DNHVCPICLTDPKD----MA-FGCGHQTCCGCGQDL----DLCPICRSFIQ 429 (435)
Q Consensus 388 e~~~CpICl~~~~d----v~-~~CGH~fC~~C~~~l----~~CPiCR~~i~ 429 (435)
++..|+||++.+.+ ++ ++|||.||..|+..| ..||+||.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 45789999998754 33 499999999999876 58999999875
No 47
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.45 E-value=3.8e-08 Score=82.28 Aligned_cols=44 Identities=34% Similarity=0.717 Sum_probs=37.1
Q ss_pred CCCCcccccccCCcc-ceeCCCCccchhhhhcC-------CCCCcccccccc
Q 013848 387 SDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL-------DLCPICRSFIQT 430 (435)
Q Consensus 387 ~e~~~CpICl~~~~d-v~~~CGH~fC~~C~~~l-------~~CPiCR~~i~~ 430 (435)
.+...|+||++.+.+ ++++|||.||..|+..+ ..||+||.++..
T Consensus 19 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 19 QKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred cCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 345789999999999 66799999999999755 279999998864
No 48
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.45 E-value=5.8e-08 Score=79.35 Aligned_cols=46 Identities=24% Similarity=0.601 Sum_probs=37.5
Q ss_pred CCCCCcccccccCCcc---c-eeCCCCccchhhhhcC----CCCCccccccccc
Q 013848 386 TSDNHVCPICLTDPKD---M-AFGCGHQTCCGCGQDL----DLCPICRSFIQTR 431 (435)
Q Consensus 386 l~e~~~CpICl~~~~d---v-~~~CGH~fC~~C~~~l----~~CPiCR~~i~~~ 431 (435)
..++..|+||++.+.+ + .++|||.||..|+..| ..||+||..+...
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 90 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPPP 90 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSCC
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCCC
Confidence 4567799999988765 3 3699999999999876 4799999988654
No 49
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.45 E-value=3.2e-08 Score=81.61 Aligned_cols=45 Identities=27% Similarity=0.592 Sum_probs=38.2
Q ss_pred CCCCCcccccccCCcc-cee-CCCCccchhhhhcC----CCCCcccccccc
Q 013848 386 TSDNHVCPICLTDPKD-MAF-GCGHQTCCGCGQDL----DLCPICRSFIQT 430 (435)
Q Consensus 386 l~e~~~CpICl~~~~d-v~~-~CGH~fC~~C~~~l----~~CPiCR~~i~~ 430 (435)
++++..|+||++.+.+ +++ +|||.||..|+..+ ..||+||..+..
T Consensus 19 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 19 IDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 4556899999999999 566 89999999999765 379999998864
No 50
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.43 E-value=5.9e-08 Score=82.79 Aligned_cols=47 Identities=26% Similarity=0.648 Sum_probs=40.3
Q ss_pred CCCCCCCcccccccCCcc-ceeCCCCccchhhhhcC-----CCCCcccccccc
Q 013848 384 SSTSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL-----DLCPICRSFIQT 430 (435)
Q Consensus 384 ~~l~e~~~CpICl~~~~d-v~~~CGH~fC~~C~~~l-----~~CPiCR~~i~~ 430 (435)
..++++..|+||++.+.+ +.++|||.||..|+..+ ..||+||.++..
T Consensus 13 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred cCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 356677899999999999 56699999999999865 389999998865
No 51
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.43 E-value=5.7e-08 Score=86.91 Aligned_cols=45 Identities=24% Similarity=0.509 Sum_probs=38.4
Q ss_pred CCCCcccccccCCcc-ceeCCCCccchhhhhcC-----CCCCccccccccc
Q 013848 387 SDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL-----DLCPICRSFIQTR 431 (435)
Q Consensus 387 ~e~~~CpICl~~~~d-v~~~CGH~fC~~C~~~l-----~~CPiCR~~i~~~ 431 (435)
++...|+||++.+.+ ++++|||.||..|+..+ ..||+||..+...
T Consensus 76 ~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 76 EQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred ccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 355799999999999 66799999999999865 3799999998754
No 52
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=98.41 E-value=9.7e-07 Score=84.72 Aligned_cols=149 Identities=15% Similarity=0.253 Sum_probs=102.9
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHH-HHHHHHHhhcccccC---CCCccceeeeCCCCCCCCcccccCC
Q 013848 94 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPY-EQAISIIGKTLSSFD---EDNLIPCFGFGDASTHDQEVFSFYP 169 (435)
Q Consensus 94 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Y-q~AI~~Ig~vl~~yD---~D~~ip~fGFGa~~~~~~~vF~~~~ 169 (435)
+++++.||-|+|++. ..+ +++...+-.++..|+ ++-.|-++.|+.... .+|+|+.
T Consensus 19 ~DivfvlD~SgSM~~------------------~~~~~~~k~~~~~lv~~l~~~~~~~rvglv~Fs~~~~---~~~~l~~ 77 (266)
T 4hqo_A 19 VDLYLLVDGSGSIGY------------------PNWITKVIPMLNGLINSLSLSRDTINLYMNLFGSYTT---ELIRLGS 77 (266)
T ss_dssp EEEEEEEECSTTTCH------------------HHHHHTHHHHHHHHHHTCCBCTTSEEEEEEEESSSEE---EEECTTS
T ss_pred eeEEEEEECCCCcCh------------------hHHHHHHHHHHHHHHHHcccCCCCcEEEEEEecCCcc---eEEecCC
Confidence 689999999999952 345 466777777777777 566899999998632 2455533
Q ss_pred CCCccCCHHHHHHHHHHhcCcccccCCCChHHHHHHHHHHHHhc---CCceEEEEEEeCCcccccCCcccCccchhHHHH
Q 013848 170 DEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHS---GGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKT 246 (435)
Q Consensus 170 ~~~~~~G~~gvl~~Yr~~~~~v~l~GPT~fapII~~a~~~~~~~---~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~T 246 (435)
.. -...+.++++-..+-......|-|+....|+.|.+..... .+.-.++|+||||..+| ....
T Consensus 78 ~~--~~~~~~~~~~i~~l~~~~~~~G~T~~~~AL~~a~~~l~~~~~r~~~~~~iIllTDG~~~d------------~~~~ 143 (266)
T 4hqo_A 78 GQ--SIDKRQALSKVTELRKTYTPYGTTSMTAALDEVQKHLNDRVNREKAIQLVILMTDGVPNS------------KYRA 143 (266)
T ss_dssp HH--HHCHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHTTCSCTTSEEEEEEEECSCCSC------------HHHH
T ss_pred CC--ccCHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHhhccccCCCCeEEEEEccCCCCC------------chHH
Confidence 21 1124555555444422235678999999999998877654 23468999999999875 4556
Q ss_pred HHHHHHhcCCCeEEEEEecCCCC-CCcccccC
Q 013848 247 VEAIVKASEYPLSIILVGVGDGP-WDMMREFD 277 (435)
Q Consensus 247 ~~aIv~AS~~PLSIIiVGVGd~~-f~~m~~lD 277 (435)
.+++.++-+..+.|..||||+.. .+.|+++-
T Consensus 144 ~~~a~~l~~~gi~i~~iGiG~~~~~~~L~~iA 175 (266)
T 4hqo_A 144 LEVANKLKQRNVRLAVIGIGQGINHQFNRLIA 175 (266)
T ss_dssp HHHHHHHHHTTCEEEEEECSSSCCHHHHHHHH
T ss_pred HHHHHHHHHCCCEEEEEecCcccCHHHHHHhh
Confidence 66777777778999999999853 33334443
No 53
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.40 E-value=6.4e-08 Score=81.54 Aligned_cols=43 Identities=21% Similarity=0.476 Sum_probs=34.4
Q ss_pred CCcccccccCCcc-c------------------eeCCCCccchhhhhcCC---------CCCccccccccc
Q 013848 389 NHVCPICLTDPKD-M------------------AFGCGHQTCCGCGQDLD---------LCPICRSFIQTR 431 (435)
Q Consensus 389 ~~~CpICl~~~~d-v------------------~~~CGH~fC~~C~~~l~---------~CPiCR~~i~~~ 431 (435)
+..|+||++.+.+ . .++|||.||..|+..|. .||+||..+..+
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 4589999998754 1 45999999999997653 799999988643
No 54
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.39 E-value=1.1e-07 Score=90.65 Aligned_cols=44 Identities=14% Similarity=0.050 Sum_probs=37.8
Q ss_pred CCCCcccccccCCcc-ceeCCCCccchhhhhcC-----CCCCcccccccc
Q 013848 387 SDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL-----DLCPICRSFIQT 430 (435)
Q Consensus 387 ~e~~~CpICl~~~~d-v~~~CGH~fC~~C~~~l-----~~CPiCR~~i~~ 430 (435)
.+...|+||++.+++ |+++|||.||..|+..+ ..||+||.++..
T Consensus 206 ~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 206 PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 356899999999999 66799999999999755 249999999864
No 55
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.35 E-value=4e-08 Score=83.24 Aligned_cols=46 Identities=26% Similarity=0.452 Sum_probs=38.8
Q ss_pred CCCCCCcccccccCCcc-ceeCCCCccchhhhhcC-----CCCCcccccccc
Q 013848 385 STSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL-----DLCPICRSFIQT 430 (435)
Q Consensus 385 ~l~e~~~CpICl~~~~d-v~~~CGH~fC~~C~~~l-----~~CPiCR~~i~~ 430 (435)
.+.++..|+||++.+.+ +.++|||.||..|+..+ ..||+||.++..
T Consensus 19 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 19 HFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred hccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 34567899999999999 55799999999999754 479999999864
No 56
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.35 E-value=1.8e-07 Score=95.82 Aligned_cols=46 Identities=33% Similarity=0.723 Sum_probs=38.6
Q ss_pred CCCcccccccCCccc-eeCCCCccchhhhhcC-----CCCCccccccccccc
Q 013848 388 DNHVCPICLTDPKDM-AFGCGHQTCCGCGQDL-----DLCPICRSFIQTRIK 433 (435)
Q Consensus 388 e~~~CpICl~~~~dv-~~~CGH~fC~~C~~~l-----~~CPiCR~~i~~~ir 433 (435)
....|+||++..++. .++|||.||..|+..| ..||+||.++.....
T Consensus 331 ~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~ 382 (389)
T 2y1n_A 331 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEP 382 (389)
T ss_dssp SSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEEE
T ss_pred CCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCcee
Confidence 347999999999995 4699999999999754 589999999986543
No 57
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.34 E-value=4.1e-08 Score=87.00 Aligned_cols=45 Identities=20% Similarity=0.496 Sum_probs=38.8
Q ss_pred CCCCCCCcccccccCCcc-ceeCCCCccchhhhhcC-----CCCCcccccc
Q 013848 384 SSTSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL-----DLCPICRSFI 428 (435)
Q Consensus 384 ~~l~e~~~CpICl~~~~d-v~~~CGH~fC~~C~~~l-----~~CPiCR~~i 428 (435)
..++++..|+||++.+.+ +.++|||.||..|+..+ ..||+||.++
T Consensus 26 ~~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 26 TKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GGCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred ccCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 346778999999999999 66799999999999876 3799999975
No 58
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=98.26 E-value=6.7e-06 Score=73.62 Aligned_cols=137 Identities=12% Similarity=0.089 Sum_probs=91.7
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCC---CCccceeeeCCCCCCCCcccccCCC
Q 013848 94 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDE---DNLIPCFGFGDASTHDQEVFSFYPD 170 (435)
Q Consensus 94 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~yD~---D~~ip~fGFGa~~~~~~~vF~~~~~ 170 (435)
.++++.||-|+|++. ..++.+...+..++..|+. .-.+-++.|+.... .+|+|+..
T Consensus 18 ~divfvlD~SgSm~~------------------~~~~~~k~~~~~~i~~l~~~~~~~rv~vv~F~~~~~---~~~~l~~~ 76 (178)
T 2xgg_A 18 LDICFLIDSSGSIGI------------------QNFRLVKQFLHTFLMVLPIGPEEVNNAVVTYSTDVH---LQWDLQSP 76 (178)
T ss_dssp EEEEEEEECCTTTCH------------------HHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEE---EEECTTSG
T ss_pred eeEEEEEECCCCCCH------------------HHHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCceE---EEEeCCCC
Confidence 689999999999952 3577778888888888863 36899999998642 23555331
Q ss_pred CCccCCHHHHHHHHHHhcCcccccCCCChHHHHHHHHHHHHhc-----CCceEEEEEEeCCcccccCCcccCccchhHHH
Q 013848 171 EKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHS-----GGQYHVLVIIADGQVTRSVDTEHGQLSSQEKK 245 (435)
Q Consensus 171 ~~~~~G~~gvl~~Yr~~~~~v~l~GPT~fapII~~a~~~~~~~-----~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~ 245 (435)
. ....+.++++-..+ +. ..|.|+....|+.|.+..... ...-.++|+||||..++ ...
T Consensus 77 ~--~~~~~~~~~~i~~l-~~--~~g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~~~------------~~~ 139 (178)
T 2xgg_A 77 N--AVDKQLAAHAVLDM-PY--KKGSTNTSDGLKACKQILFTGSRPGREHVPKLVIGMTDGESDS------------DFR 139 (178)
T ss_dssp G--GSCHHHHHHHHHHC-CC--CCCCCCHHHHHHHHHHHHHHCCCTTCTTSCEEEEEEESSCCCH------------HHH
T ss_pred C--ccCHHHHHHHHHhC-CC--CCCCccHHHHHHHHHHHhcCcccCCCCCCCEEEEEEcCCCCCC------------Ccc
Confidence 1 12455555543332 21 568999999999998875321 12457999999999875 122
Q ss_pred HHHHHHHhcCCCeEEEEEecCCC
Q 013848 246 TVEAIVKASEYPLSIILVGVGDG 268 (435)
Q Consensus 246 T~~aIv~AS~~PLSIIiVGVGd~ 268 (435)
..+++..+-+..+-|..||||+.
T Consensus 140 ~~~~~~~l~~~gi~v~~igvG~~ 162 (178)
T 2xgg_A 140 TVRAAKEIRELGGIVTVLAVGHY 162 (178)
T ss_dssp HSHHHHHHHHTTCEEEEEECC--
T ss_pred HHHHHHHHHHCCCEEEEEEcCCc
Confidence 33444444456889999999974
No 59
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=98.26 E-value=7.4e-06 Score=72.74 Aligned_cols=146 Identities=14% Similarity=0.127 Sum_probs=93.4
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhccccc-CCCCccceeeeCCCCCCCCcccccCCCCC
Q 013848 94 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSF-DEDNLIPCFGFGDASTHDQEVFSFYPDEK 172 (435)
Q Consensus 94 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~y-D~D~~ip~fGFGa~~~~~~~vF~~~~~~~ 172 (435)
+++++.||-|+|+.. .++..+..+-.++..| .++-.+-++.|+.... .+|++..
T Consensus 8 ~div~vlD~SgSM~~-------------------~~~~~~~~~~~~~~~~~~~~~~v~lv~f~~~~~---~~~~l~~--- 62 (185)
T 3n2n_F 8 FDLYFILDKSGSVLH-------------------HWNEIYYFVEQLAHKFISPQLRMSFIVFSTRGT---TLMKLTE--- 62 (185)
T ss_dssp EEEEEEEECSGGGGG-------------------GHHHHHHHHHHHHHHCCCTTEEEEEEEESSSEE---EEEEEEC---
T ss_pred eeEEEEEeCCCChhh-------------------hHHHHHHHHHHHHHHhCCCCcEEEEEEEecCce---EEeccCC---
Confidence 689999999999951 1233333333333222 3456899999987542 2345542
Q ss_pred ccCCHHHHHHHHHHhcCcccccCCCChHHHHHHHHHHHHh--cC--CceEEEEEEeCCcccccCCcccCccchhHHHHHH
Q 013848 173 FCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEH--SG--GQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVE 248 (435)
Q Consensus 173 ~~~G~~gvl~~Yr~~~~~v~l~GPT~fapII~~a~~~~~~--~~--~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~T~~ 248 (435)
+.+.+.++-.++- .+...|-|+....|+.|.+.... .+ ..-.++|+||||..++. ......+
T Consensus 63 ---~~~~~~~~i~~l~-~~~~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~iillTDG~~~~~----------~~~~~~~ 128 (185)
T 3n2n_F 63 ---DREQIRQGLEELQ-KVLPGGDTYMHEGFERASEQIYYENRQGYRTASVIIALTDGELHED----------LFFYSER 128 (185)
T ss_dssp ---CHHHHHHHHHHHH-TCCCCSCCCHHHHHHHHHHHHHHHHTTCBCEEEEEEEEECCCCCHH----------HHHHHHH
T ss_pred ---CHHHHHHHHHHHh-hhcCCCCccHHHHHHHHHHHHhhccccCCCCCcEEEEEcCCCCCCC----------cccchHH
Confidence 4445544433332 23457899999999999986522 22 24578999999998751 1123355
Q ss_pred HHHHhcCCCeEEEEEecCCCCCCcccccCC
Q 013848 249 AIVKASEYPLSIILVGVGDGPWDMMREFDD 278 (435)
Q Consensus 249 aIv~AS~~PLSIIiVGVGd~~f~~m~~lDd 278 (435)
++..+.+..+-|..||||+.+.+.|+++-+
T Consensus 129 ~~~~~~~~gi~i~~igvg~~~~~~L~~iA~ 158 (185)
T 3n2n_F 129 EANRSRDLGAIVYAVGVKDFNETQLARIAD 158 (185)
T ss_dssp HHHHHHHTTEEEEEEECSSCCHHHHTTTSS
T ss_pred HHHHHHHCCCEEEEEEeccCCHHHHHHHhC
Confidence 666666778999999999877777766643
No 60
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=98.24 E-value=5.1e-06 Score=73.62 Aligned_cols=147 Identities=12% Similarity=0.123 Sum_probs=95.6
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCCCCccceeeeCCCCCCCCcccccCCCCCc
Q 013848 94 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKF 173 (435)
Q Consensus 94 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~yD~D~~ip~fGFGa~~~~~~~vF~~~~~~~~ 173 (435)
.++++.||-|+|+... .....+.|...+..++. .+..+-++.|+.... .++++.
T Consensus 7 ~dvv~vlD~SgSM~~~---------------~~~~~~~~~~~~~~~~~---~~~~v~lv~f~~~~~---~~~~~~----- 60 (182)
T 1shu_X 7 FDLYFVLDKSGSVANN---------------WIEIYNFVQQLAERFVS---PEMRLSFIVFSSQAT---IILPLT----- 60 (182)
T ss_dssp EEEEEEEECSGGGGGG---------------HHHHHHHHHHHHHHCCC---TTEEEEEEEESSSEE---EEEEEE-----
T ss_pred eeEEEEEECCCCcccC---------------HHHHHHHHHHHHHHhcC---CCceEEEEEeCCCce---EEECCC-----
Confidence 5899999999999520 01122334444444443 467899999987532 234443
Q ss_pred cCCHHHHHHHHHHhcCcccccCCCChHHHHHHHHHHHHhc--CCceEEEEEEeCCcccccCCcccCccchhHHHHHHHHH
Q 013848 174 CNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHS--GGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIV 251 (435)
Q Consensus 174 ~~G~~gvl~~Yr~~~~~v~l~GPT~fapII~~a~~~~~~~--~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~T~~aIv 251 (435)
.+.+.+.++-.. +..+...|.|++...|+.|.+..... ...-.++++||||..++. ......+++.
T Consensus 61 -~~~~~~~~~l~~-l~~~~~~g~T~~~~al~~a~~~l~~~~~~~~~~~iiliTDG~~~~~----------~~~~~~~~~~ 128 (182)
T 1shu_X 61 -GDRGKISKGLED-LKRVSPVGETYIHEGLKLANEQIQKAGGLKTSSIIIALTDGKLDGL----------VPSYAEKEAK 128 (182)
T ss_dssp -CCHHHHHHHHHH-HHTCCCCSCCCHHHHHHHHHHHHHHHTGGGSCEEEEEEECCCCCTT----------HHHHHHHHHH
T ss_pred -CCHHHHHHHHHh-cccCCCCCCchHHHHHHHHHHHHHhccCCCCCeEEEEECCCCcCCC----------CchhHHHHHH
Confidence 233333333222 22345679999999999999987654 234579999999997651 1233445556
Q ss_pred HhcCCCeEEEEEecCCCCCCcccccCC
Q 013848 252 KASEYPLSIILVGVGDGPWDMMREFDD 278 (435)
Q Consensus 252 ~AS~~PLSIIiVGVGd~~f~~m~~lDd 278 (435)
.+.+..+.|..||||+.+...|+++-+
T Consensus 129 ~~~~~~i~i~~igvg~~~~~~L~~ia~ 155 (182)
T 1shu_X 129 ISRSLGASVYCVGVLDFEQAQLERIAD 155 (182)
T ss_dssp HHHHTTCEEEEEECSSCCHHHHHHHSS
T ss_pred HHHhCCCEEEEEeCCcCCHHHHHHHhC
Confidence 666778999999999887777777744
No 61
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.22 E-value=4.4e-07 Score=74.73 Aligned_cols=42 Identities=26% Similarity=0.496 Sum_probs=35.6
Q ss_pred CCCCCcccccccCCcc-ceeC-CCCccchhhhhcC----------CCCCc--cccc
Q 013848 386 TSDNHVCPICLTDPKD-MAFG-CGHQTCCGCGQDL----------DLCPI--CRSF 427 (435)
Q Consensus 386 l~e~~~CpICl~~~~d-v~~~-CGH~fC~~C~~~l----------~~CPi--CR~~ 427 (435)
..++..||||++.+++ |+++ |||.||..|+..+ ..||+ |+..
T Consensus 4 ~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 4577899999999999 6675 9999999999754 28999 9865
No 62
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.21 E-value=2.8e-07 Score=78.49 Aligned_cols=44 Identities=36% Similarity=0.876 Sum_probs=36.7
Q ss_pred CCCCcccccccCCcc--------ceeCCCCccchhhhhcC----CCCCcccccccc
Q 013848 387 SDNHVCPICLTDPKD--------MAFGCGHQTCCGCGQDL----DLCPICRSFIQT 430 (435)
Q Consensus 387 ~e~~~CpICl~~~~d--------v~~~CGH~fC~~C~~~l----~~CPiCR~~i~~ 430 (435)
.++..|+||++.+.+ ++++|||.||..|+..| ..||+||+.+..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 60 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcc
Confidence 456899999998866 34599999999999866 479999998864
No 63
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=98.21 E-value=3.9e-06 Score=76.65 Aligned_cols=139 Identities=18% Similarity=0.264 Sum_probs=96.7
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCCCCccceeeeCCCCCCCCcccccCCCCCc
Q 013848 94 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKF 173 (435)
Q Consensus 94 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~yD~D~~ip~fGFGa~~~~~~~vF~~~~~~~~ 173 (435)
.++++.||.|+|+...+ ..++..+.|...+..++..+. +..+-++.|+.... .++++..
T Consensus 12 ~~iv~vlD~SgSM~~~d-------------~~~~r~~~ak~~~~~~~~~~~-~~~v~lv~F~~~~~---~~~~~~~---- 70 (218)
T 3ibs_A 12 VEVIIALDISNSMLAQD-------------VQPSRLEKAKRLISRLVDELD-NDKVGMIVFAGDAF---TQLPITS---- 70 (218)
T ss_dssp CEEEEEEECSGGGGCCS-------------SSSCHHHHHHHHHHHHHHTCS-SCEEEEEEESSSEE---EEEEEES----
T ss_pred CcEEEEEECCcCccccc-------------CCcCHHHHHHHHHHHHHHhCC-CCeEEEEEECCCce---EeCCCCC----
Confidence 57999999999997431 125788888888888888887 55899999997632 2344432
Q ss_pred cCCHHHHHHHHHHhcCcccccCCCChHHHHHHHHHHHHhcCCceEEEEEEeCCcccccCCcccCccchhHHHHHHHHHHh
Q 013848 174 CNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKA 253 (435)
Q Consensus 174 ~~G~~gvl~~Yr~~~~~v~l~GPT~fapII~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~T~~aIv~A 253 (435)
+.+.+.+.-..+-+.....|.|++...|+.|.+........-.++|+||||..++. ...+++..+
T Consensus 71 --~~~~~~~~l~~l~~~~~~~g~T~l~~al~~a~~~l~~~~~~~~~ivllTDG~~~~~-------------~~~~~~~~~ 135 (218)
T 3ibs_A 71 --DYISAKMFLESISPSLISKQGTAIGEAINLATRSFTPQEGVGRAIIVITDGENHEG-------------GAVEAAKAA 135 (218)
T ss_dssp --CHHHHHHHHHTCCGGGCCSCSCCHHHHHHHHHTTSCSCSSCCEEEEEEECCTTCCS-------------CHHHHHHHH
T ss_pred --CHHHHHHHHHhcCcccCCCCCCcHHHHHHHHHHHHhhCCCCCcEEEEEcCCCCCCC-------------cHHHHHHHH
Confidence 34444443333333344578999999999998776655445578999999998751 233445555
Q ss_pred cCCCeEEEEEecCCC
Q 013848 254 SEYPLSIILVGVGDG 268 (435)
Q Consensus 254 S~~PLSIIiVGVGd~ 268 (435)
.+..+.|..||||+.
T Consensus 136 ~~~~i~v~~igig~~ 150 (218)
T 3ibs_A 136 AEKGIQVSVLGVGMP 150 (218)
T ss_dssp HTTTEEEEEEEESCT
T ss_pred HhcCCEEEEEEecCC
Confidence 667899999999974
No 64
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=98.18 E-value=2.7e-06 Score=77.70 Aligned_cols=154 Identities=14% Similarity=0.144 Sum_probs=96.3
Q ss_pred eeceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhc---ccccCCCCccceeeeCCCCCCCCcccccCC
Q 013848 93 SSNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKT---LSSFDEDNLIPCFGFGDASTHDQEVFSFYP 169 (435)
Q Consensus 93 ~~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~v---l~~yD~D~~ip~fGFGa~~~~~~~vF~~~~ 169 (435)
..++++.||.|+|+.+ ..++.+...+..+ |..++.+-.+-++.|+.... .++.+.
T Consensus 15 ~~div~vlD~SgSM~~------------------~~~~~~k~~~~~~i~~l~~~~~~~~v~lv~f~~~~~---~~~~~~- 72 (223)
T 1q0p_A 15 SMNIYLVLDGSDSIGA------------------SNFTGAKKSLVNLIEKVASYGVKPRYGLVTYATYPK---IWVKVS- 72 (223)
T ss_dssp CEEEEEEEECSTTTCH------------------HHHHHHHHHHHHHHHHHHTTTCCCEEEEEEESSSEE---EEECTT-
T ss_pred ceeEEEEEeCCCCCch------------------HHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCccc---eeeccc-
Confidence 3689999999999963 1245544444444 55555667899999988642 223332
Q ss_pred CCCccCCHHHHHHHHHHhcCcc-cccCCCChHHHHHHHHHHHHhcC--------CceEEEEEEeCCcccccCCcccCccc
Q 013848 170 DEKFCNGFEEVLRRYRELVPHL-RLAGPTSFAPIIEMAITIVEHSG--------GQYHVLVIIADGQVTRSVDTEHGQLS 240 (435)
Q Consensus 170 ~~~~~~G~~gvl~~Yr~~~~~v-~l~GPT~fapII~~a~~~~~~~~--------~~Y~VLlIiTDG~i~d~~d~~~~~~~ 240 (435)
.+.-...+.+.++-..+-+.. ...|-|+....|+.|.+...... ..-.++|+||||..+...|
T Consensus 73 -~~~~~~~~~~~~~i~~l~~~~~~~~g~T~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~------- 144 (223)
T 1q0p_A 73 -EADSSNADWVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGD------- 144 (223)
T ss_dssp -SGGGGCHHHHHHHHHTCCTTSCSCTTCCCHHHHHHHHHHHHCCTTSSCCTTGGGCEEEEEEEECSCCCSSSC-------
T ss_pred -cCCCCCHHHHHHHHHhcccccccCCCCccHHHHHHHHHHHhhccccccccccccCCeEEEEECCCCCCCCCC-------
Confidence 222334555555443332211 24689999999999998876431 3457899999999873111
Q ss_pred hhHHHHHHHHHH----------hcCCCeEEEEEecCC-CCCCcccccCC
Q 013848 241 SQEKKTVEAIVK----------ASEYPLSIILVGVGD-GPWDMMREFDD 278 (435)
Q Consensus 241 ~~~~~T~~aIv~----------AS~~PLSIIiVGVGd-~~f~~m~~lDd 278 (435)
.....+.+.+ +.+..+-|..||||+ .+.+.|+++=.
T Consensus 145 --~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~igvG~~~~~~~L~~iA~ 191 (223)
T 1q0p_A 145 --PITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGPLVNQVNINALAS 191 (223)
T ss_dssp --THHHHHHHHHHTTCSCBTTBCCGGGEEEEEEECSSCCCHHHHHHHSC
T ss_pred --hHHHHHHHHHHHhhhhhhhhcccCCcEEEEEEecCcCCHHHHHHHhc
Confidence 2333444433 345678899999996 45556666643
No 65
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=98.17 E-value=3.9e-06 Score=87.56 Aligned_cols=151 Identities=12% Similarity=0.156 Sum_probs=104.5
Q ss_pred eeceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCCCCccceeeeCCCCCCCCcccccCCC--
Q 013848 93 SSNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPD-- 170 (435)
Q Consensus 93 ~~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~yD~D~~ip~fGFGa~~~~~~~vF~~~~~-- 170 (435)
..++++.||.|+|+.+. .+..+.|...+..++..+.++..|-++.|+.... .++++...
T Consensus 77 ~~dvv~VLD~SGSM~~~----------------~~rl~~ak~a~~~ll~~L~~~drv~lV~Fs~~a~---~~~p~t~~l~ 137 (464)
T 4fx5_A 77 ENVEVIIIDCSGSMDYP----------------RTKMMAAKEATKVAIDTLTDGAFFAVVAGTEGAR---VVYPTGGQLL 137 (464)
T ss_dssp CEEEEEEEECCGGGGTT----------------THHHHHHHHHHHHHHHHSCTTCEEEEEEESSSEE---EEESSSSSCE
T ss_pred CceEEEEEEcCcccCCC----------------CchHHHHHHHHHHHHHhCCCCCEEEEEEEcCceE---EEecCCcccc
Confidence 37999999999999632 3667888888888888888888999999987632 23333210
Q ss_pred CCccCCHHHHHHHHHHhcCcccccCCCChHHHHHHHHHHHHhcCCceEEEEEEeCCcccccCCcccCccchhHHHHHHHH
Q 013848 171 EKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAI 250 (435)
Q Consensus 171 ~~~~~G~~gvl~~Yr~~~~~v~l~GPT~fapII~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~T~~aI 250 (435)
.....+.+.+ .+.+..+...|-|++..-|+.|.+......+.-.++|+||||+.++. ....+...
T Consensus 138 ~~~~~~~~~l----~~~I~~L~~~GgT~l~~aL~~A~~~l~~~~~~~~~IILLTDG~~~~~-----------~~~~l~~~ 202 (464)
T 4fx5_A 138 RADYQSRAAA----KEAVGRLHANGGTAMGRWLAQAGRIFDTAPSAIKHAILLTDGKDESE-----------TPADLARA 202 (464)
T ss_dssp ECSHHHHHHH----HHHHHTCCCCSCCCHHHHHHHHHHHHTTCTTSEEEEEEEESSCCTTS-----------CHHHHHHH
T ss_pred cCCHHHHHHH----HHHHHcCCCCCCCcHHHHHHHHHHHHhcCCCCCCEEEEEcCCCCCCC-----------ChHHHHHH
Confidence 0001122333 34455677789999999999999988766555688899999997741 12233444
Q ss_pred HHhcCCCeEEEEEecCCC-CCCcccccC
Q 013848 251 VKASEYPLSIILVGVGDG-PWDMMREFD 277 (435)
Q Consensus 251 v~AS~~PLSIIiVGVGd~-~f~~m~~lD 277 (435)
.++....+.|..||||+. +.+.|+++-
T Consensus 203 ~~a~~~~i~i~tiGiG~~~d~~~L~~IA 230 (464)
T 4fx5_A 203 IQSSIGNFTADCRGIGEDWEPKELRKIA 230 (464)
T ss_dssp HHHHTTTCEEEEEEESSSSCHHHHHHHH
T ss_pred HHHhcCCCeEEEEEeCCccCHHHHHHHH
Confidence 456677899999999953 555566553
No 66
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.12 E-value=5.5e-07 Score=81.15 Aligned_cols=47 Identities=26% Similarity=0.648 Sum_probs=40.4
Q ss_pred CCCCCCCcccccccCCcc-ceeCCCCccchhhhhcC-----CCCCcccccccc
Q 013848 384 SSTSDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL-----DLCPICRSFIQT 430 (435)
Q Consensus 384 ~~l~e~~~CpICl~~~~d-v~~~CGH~fC~~C~~~l-----~~CPiCR~~i~~ 430 (435)
..+++...|+||++.+.+ +.++|||.||..|+.++ ..||+||.++..
T Consensus 13 ~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred cCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 356778999999999999 55699999999999866 389999998865
No 67
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.12 E-value=1.8e-06 Score=69.02 Aligned_cols=43 Identities=23% Similarity=0.581 Sum_probs=33.2
Q ss_pred CCCcccccccCCcc--------------c-ee-CCCCccchhhhhcC----CCCCcccccccc
Q 013848 388 DNHVCPICLTDPKD--------------M-AF-GCGHQTCCGCGQDL----DLCPICRSFIQT 430 (435)
Q Consensus 388 e~~~CpICl~~~~d--------------v-~~-~CGH~fC~~C~~~l----~~CPiCR~~i~~ 430 (435)
++..|+||++.+.+ + ++ +|||.|+..|+.+| ..||+||+++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 45678888887643 2 44 59999999999876 379999998753
No 68
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.11 E-value=6.2e-07 Score=82.88 Aligned_cols=44 Identities=14% Similarity=0.039 Sum_probs=37.8
Q ss_pred CCCCcccccccCCcc-ceeCCCCccchhhhhcC-----CCCCcccccccc
Q 013848 387 SDNHVCPICLTDPKD-MAFGCGHQTCCGCGQDL-----DLCPICRSFIQT 430 (435)
Q Consensus 387 ~e~~~CpICl~~~~d-v~~~CGH~fC~~C~~~l-----~~CPiCR~~i~~ 430 (435)
.+...||||++.+++ |+++|||.||..|+..+ ..||+||.++..
T Consensus 104 p~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 356899999999999 66799999999999754 259999998864
No 69
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.05 E-value=8.2e-07 Score=75.51 Aligned_cols=44 Identities=36% Similarity=0.876 Sum_probs=36.9
Q ss_pred CCCCcccccccCCcc--------ceeCCCCccchhhhhcC----CCCCcccccccc
Q 013848 387 SDNHVCPICLTDPKD--------MAFGCGHQTCCGCGQDL----DLCPICRSFIQT 430 (435)
Q Consensus 387 ~e~~~CpICl~~~~d--------v~~~CGH~fC~~C~~~l----~~CPiCR~~i~~ 430 (435)
++...|+||++.+.+ +.++|||.||..|+.+| ..||+||..+..
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 125 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCCh
Confidence 456789999998765 44599999999999865 589999999875
No 70
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A
Probab=98.03 E-value=1.5e-05 Score=71.72 Aligned_cols=141 Identities=14% Similarity=0.208 Sum_probs=94.7
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccC---CCCccceeeeCCCCCCCCcccccCCC
Q 013848 94 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFD---EDNLIPCFGFGDASTHDQEVFSFYPD 170 (435)
Q Consensus 94 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~yD---~D~~ip~fGFGa~~~~~~~vF~~~~~ 170 (435)
.++++.||-|+|++ .+.++.+...+..++..++ ++-.+-++.|+.... .+|+|+.
T Consensus 6 ~div~vlD~SgSm~------------------~~~~~~~k~~~~~~~~~l~~~~~~~rv~lv~f~~~~~---~~~~l~~- 63 (189)
T 1atz_A 6 LDVILLLDGSSSFP------------------ASYFDEMKSFAKAFISKANIGPRLTQVSVLQYGSITT---IDVPWNV- 63 (189)
T ss_dssp EEEEEEEECSSSSC------------------HHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEE---EEECTTC-
T ss_pred eeEEEEEeCCCCCC------------------hhhHHHHHHHHHHHHHhcCcCCCCeEEEEEEECCcce---EEEecCC-
Confidence 58999999999995 2457777777777777776 234799999987542 2355532
Q ss_pred CCccCCHHHHHHHHHHhcCcccccCCCChHHHHHHHHHHHHhc-----CCceEEEEEEeCCcccccCCcccCccchhHHH
Q 013848 171 EKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHS-----GGQYHVLVIIADGQVTRSVDTEHGQLSSQEKK 245 (435)
Q Consensus 171 ~~~~~G~~gvl~~Yr~~~~~v~l~GPT~fapII~~a~~~~~~~-----~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~ 245 (435)
....+.+.++-..+ +. ..|.|+....|+.|.+..... .+.-.++||||||..++. ..+
T Consensus 64 ---~~~~~~~~~~i~~l-~~--~~g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~vivltdg~~~~~-----------~~~ 126 (189)
T 1atz_A 64 ---VPEKAHLLSLVDVM-QR--EGGPSQIGDALGFAVRYLTSEMHGARPGASKAVVILVTDVSVDS-----------VDA 126 (189)
T ss_dssp ---CCCHHHHHHHHHTC-CC--CCCCCCHHHHHHHHHHHHHSCCTTCCTTSEEEEEEEECSCCSSC-----------CHH
T ss_pred ---CCCHHHHHHHHHhC-cC--CCCcchHHHHHHHHHHHHhccccCCCCCCCcEEEEEeCCCCCch-----------HHH
Confidence 22455665554332 22 368899999999999877542 234577889999987651 234
Q ss_pred HHHHHHHhcCCCeEEEEEecCC-CCCCccccc
Q 013848 246 TVEAIVKASEYPLSIILVGVGD-GPWDMMREF 276 (435)
Q Consensus 246 T~~aIv~AS~~PLSIIiVGVGd-~~f~~m~~l 276 (435)
..+.+. +..+-|..||||+ .+-..|+.+
T Consensus 127 ~~~~~~---~~gi~v~~igvG~~~~~~~L~~i 155 (189)
T 1atz_A 127 AADAAR---SNRVTVFPIGIGDRYDAAQLRIL 155 (189)
T ss_dssp HHHHHH---HTTEEEEEEEESSSSCHHHHHHH
T ss_pred HHHHHH---HCCCEEEEEEcCCcCCHHHHHHH
Confidence 444443 5688999999998 344455554
No 71
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=98.01 E-value=1.8e-06 Score=77.66 Aligned_cols=143 Identities=20% Similarity=0.272 Sum_probs=92.1
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhccccc-CCCCccceeeeCCCCCCCCcccccCCCCC
Q 013848 94 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSF-DEDNLIPCFGFGDASTHDQEVFSFYPDEK 172 (435)
Q Consensus 94 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~y-D~D~~ip~fGFGa~~~~~~~vF~~~~~~~ 172 (435)
.++++.||-|+|+.. ..++.++..+-.++..+ .++-.+-++.|+.... .+|+++..
T Consensus 10 ~div~vlD~SgSM~~------------------~~~~~~~~~~~~~~~~l~~~~~~v~lv~f~~~~~---~~~~~~~~-- 66 (198)
T 1n3y_A 10 QDIVFLIDGSGSISS------------------RNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQ---THFTFEEF-- 66 (198)
T ss_dssp EEEEEEEECCTTSCH------------------HHHHHHHHHHHHHHTTSCTTTEEEEEEEESSSEE---EEECHHHH--
T ss_pred eeEEEEEECCCCCCH------------------HHHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCcc---EEEecCcc--
Confidence 589999999999952 24567777777778788 5777899999998632 22333210
Q ss_pred ccCCHHHHHHHHHHhcCccc-ccCCCChHHHHHHHHHH-HHhc----CCceEEEEEEeCCccc-ccCCcccCccchhHHH
Q 013848 173 FCNGFEEVLRRYRELVPHLR-LAGPTSFAPIIEMAITI-VEHS----GGQYHVLVIIADGQVT-RSVDTEHGQLSSQEKK 245 (435)
Q Consensus 173 ~~~G~~gvl~~Yr~~~~~v~-l~GPT~fapII~~a~~~-~~~~----~~~Y~VLlIiTDG~i~-d~~d~~~~~~~~~~~~ 245 (435)
.. .+...+.+..+. ..|.|+....|+.|.+. .... ...-.++|+||||..+ +..+ ..+
T Consensus 67 -----~~-~~~~~~~i~~l~~~~g~T~~~~al~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~~~~~---------~~~ 131 (198)
T 1n3y_A 67 -----RR-SSNPLSLLASVHQLQGFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGDSLD---------YKD 131 (198)
T ss_dssp -----HH-CSSGGGGGTTCCCCCSCBCHHHHHHHHHTTTTSGGGTCCTTSEEEEEEEESSCCBSCSSC---------HHH
T ss_pred -----CC-HHHHHHHHhcCcCCCCCchHHHHHHHHHHHHhCcccCCCCCCceEEEEECCCCCCCCccc---------HHH
Confidence 00 011122344443 57899999999999844 3321 2346789999999987 3211 233
Q ss_pred HHHHHHHhcCCCeEEEEEecCCCC-----CCcccccC
Q 013848 246 TVEAIVKASEYPLSIILVGVGDGP-----WDMMREFD 277 (435)
Q Consensus 246 T~~aIv~AS~~PLSIIiVGVGd~~-----f~~m~~lD 277 (435)
++..+.+..+-|..||||+.. .+.|+++-
T Consensus 132 ---~~~~~~~~gi~i~~igvG~~~~~~~~~~~L~~iA 165 (198)
T 1n3y_A 132 ---VIPMADAAGIIRYAIGVGLAFQNRNSWKELNDIA 165 (198)
T ss_dssp ---HHHHHHHTTCEEEEEEESGGGGSSTTHHHHHHHS
T ss_pred ---HHHHHHHCCCEEEEEEccccccccccHHHHHHHH
Confidence 344445667889999999863 45555543
No 72
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=98.00 E-value=9.5e-06 Score=83.94 Aligned_cols=154 Identities=15% Similarity=0.198 Sum_probs=101.3
Q ss_pred eeceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhccccc---CCCCccceeeeCCCCCCCCcccccCC
Q 013848 93 SSNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSF---DEDNLIPCFGFGDASTHDQEVFSFYP 169 (435)
Q Consensus 93 ~~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~y---D~D~~ip~fGFGa~~~~~~~vF~~~~ 169 (435)
.+++++.||-|+|++ ...+++|.+.+..+++.+ ..+-.+-+..|+.... .+|++..
T Consensus 9 ~~divfvlD~SgSM~------------------~~~~~~~k~~~~~l~~~l~~~~~~~rv~lv~f~~~~~---~~~~l~~ 67 (509)
T 2odp_A 9 HLNLYLLLDASQSVS------------------ENDFLIFKESASLMVDRIFSFEINVSVAIITFASEPK---VLMSVLN 67 (509)
T ss_dssp EEEEEEEEECSTTSC------------------HHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEESSSEE---EEECTTS
T ss_pred CeeEEEEEeCCCccc------------------hhhHHHHHHHHHHHHHHhhccCCCceEEEEEccCCCc---eeEeccC
Confidence 368999999999995 134677777777776666 6778999999987542 2344421
Q ss_pred CCCccCCHHHHHHHHHHhcCcccc-cCCCChHHHHHHHHHHHHhcC-----------CceEEEEEEeCCcccccCCcccC
Q 013848 170 DEKFCNGFEEVLRRYRELVPHLRL-AGPTSFAPIIEMAITIVEHSG-----------GQYHVLVIIADGQVTRSVDTEHG 237 (435)
Q Consensus 170 ~~~~~~G~~gvl~~Yr~~~~~v~l-~GPT~fapII~~a~~~~~~~~-----------~~Y~VLlIiTDG~i~d~~d~~~~ 237 (435)
+.-...+.++++-.++-..... .|.|+....|+.|.+..+... ..-.++|+||||.-++..|
T Consensus 68 --~~~~~~~~~~~~l~~l~~~~~~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~~~~iillTDG~~~~~~~---- 141 (509)
T 2odp_A 68 --DNSRDMTEVISSLENANYKDHENGTGTNTYAALNSVYLMMNNQMRLLGMETMAWQEIRHAIILLTDGKSNMGGS---- 141 (509)
T ss_dssp --GGGGCHHHHHHHHHTCCGGGGTTCCSCCHHHHHHHHHHHHHHHHHHHCTTSHHHHTEEEEEEEESCSCCCSSSC----
T ss_pred --CCCCCHHHHHHHHHhcccccCCCCCCccHHHHHHHHHHHHhhcccccccccccccccceEEEEECCCCccCCCC----
Confidence 1223456665543332221111 388999999999988764321 1337889999998775321
Q ss_pred ccchhHHHHHHHHHHh------cCCCeEEEEEecCC--CCCCcccccCC
Q 013848 238 QLSSQEKKTVEAIVKA------SEYPLSIILVGVGD--GPWDMMREFDD 278 (435)
Q Consensus 238 ~~~~~~~~T~~aIv~A------S~~PLSIIiVGVGd--~~f~~m~~lDd 278 (435)
..+..+.+.+. .+..+-|..||||+ .+.+.|+++-+
T Consensus 142 -----~~~~~~~~~~~~~~~~~~~~~i~i~~iGvG~~~~~~~~L~~iA~ 185 (509)
T 2odp_A 142 -----PKTAVDHIREILNINQKRNDYLDIYAIGVGKLDVDWRELNELGS 185 (509)
T ss_dssp -----THHHHHHHHHHTTCCSTTGGGEEEEEEEESSSCCCHHHHHHHSC
T ss_pred -----hhHHHHHHHHHhhccccccCceEEEEEEcCCCcccHHHHHhhcc
Confidence 34445555432 26678899999998 57777877754
No 73
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=97.99 E-value=1.3e-05 Score=73.23 Aligned_cols=144 Identities=10% Similarity=0.158 Sum_probs=94.1
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccC---CCCccceeeeCCCCCCCCcccccCCC
Q 013848 94 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFD---EDNLIPCFGFGDASTHDQEVFSFYPD 170 (435)
Q Consensus 94 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~yD---~D~~ip~fGFGa~~~~~~~vF~~~~~ 170 (435)
.++++.||-|+|++ .+.++++...+..++..|+ ++-.+-+..|+.... .+|+|+..
T Consensus 14 ~divfvlD~SgSm~------------------~~~~~~~k~~~~~~v~~l~~~~~~~rv~vv~fs~~~~---~~~~l~~~ 72 (202)
T 1ijb_A 14 LDLVFLLDGSSRLS------------------EAEFEVLKAFVVDMMERLRVSQKWVRVAVVEYHDGSH---AYIGLKDR 72 (202)
T ss_dssp EEEEEEEECBTTSC------------------HHHHHHHHHHHHHHHHTBCBSTTSEEEEEEEESSSEE---EEECTTCC
T ss_pred ccEEEEEECCCCCC------------------HHHHHHHHHHHHHHHHhcccCCCceEEEEEEECCCce---EEEecCCC
Confidence 68999999999985 2457788888888888887 445899999987632 23555421
Q ss_pred CCccCCHHHHHHHHHHhcCcccc-cC-CCChHHHHHHHHHHH-Hhc--CCceEEEEEEeCCcccccCCcccCccchhHHH
Q 013848 171 EKFCNGFEEVLRRYRELVPHLRL-AG-PTSFAPIIEMAITIV-EHS--GGQYHVLVIIADGQVTRSVDTEHGQLSSQEKK 245 (435)
Q Consensus 171 ~~~~~G~~gvl~~Yr~~~~~v~l-~G-PT~fapII~~a~~~~-~~~--~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~ 245 (435)
...+.+.++- ..++. .| -|+....|+.|.+.. .+. ...-.++|+||||.-++. + .+.
T Consensus 73 ----~~~~~~~~~i----~~l~~~gg~~T~~~~aL~~a~~~~~~~~~r~~~~~~iillTDG~~~~~--------~--~~~ 134 (202)
T 1ijb_A 73 ----KRPSELRRIA----SQVKYAGSQVASTSEVLKYTLFQIFSKIDRPEASRIALLLMASQEPQR--------M--SRN 134 (202)
T ss_dssp ----CCHHHHHHHH----HTCCCCCBSCCCHHHHHHHHHHHTSSSCSCTTSEEEEEEEECCCCCGG--------G--CTT
T ss_pred ----CCHHHHHHHH----HhCcCCCCCcCcHHHHHHHHHHHHhccCCCCCCCeEEEEEccCCCCcc--------c--hHH
Confidence 2345554443 23333 44 399999999987543 221 234589999999997641 0 112
Q ss_pred HHHHHHHhcCCCeEEEEEecCC-CCCCccccc
Q 013848 246 TVEAIVKASEYPLSIILVGVGD-GPWDMMREF 276 (435)
Q Consensus 246 T~~aIv~AS~~PLSIIiVGVGd-~~f~~m~~l 276 (435)
..+++.++-+..+-|..||||+ .+.+.|+.+
T Consensus 135 ~~~~a~~l~~~gi~i~~igvG~~~~~~~L~~i 166 (202)
T 1ijb_A 135 FVRYVQGLKKKKVIVIPVGIGPHANLKQIRLI 166 (202)
T ss_dssp HHHHHHHHHHTTEEEEEEEESTTSCHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEEEecCCcCCHHHHHHH
Confidence 2333334445689999999996 455566655
No 74
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.98 E-value=4.9e-05 Score=74.29 Aligned_cols=164 Identities=13% Similarity=0.210 Sum_probs=112.7
Q ss_pred CceeceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccc---cCCCCccceeeeCCCCCCCCccc-c
Q 013848 91 LESSNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSS---FDEDNLIPCFGFGDASTHDQEVF-S 166 (435)
Q Consensus 91 l~~~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~---yD~D~~ip~fGFGa~~~~~~~vF-~ 166 (435)
||+ +||.||-|.|+.... -.+|-++.+..++-.++.. -+....+-+..|+.... .|. +
T Consensus 3 lEA--tViviD~S~SM~~~D-------------~~PsRl~a~k~Av~~li~~~~~~nPed~VGLVtfag~~~---~vl~p 64 (268)
T 4b4t_W 3 LEA--TVLVIDNSEYSRNGD-------------FPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANP---RVLST 64 (268)
T ss_dssp CEE--EEEEECCSSTTSSTT-------------SSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSC---EEEEE
T ss_pred cee--EEEEEECCHHHhCCC-------------CCCcHHHHHHHHHHHHHHHHhhCCCcceEEEEEecCCcc---eeccC
Confidence 563 789999999995321 1368888777776666664 45567888999976432 121 2
Q ss_pred cCCCCCccCCHHHHHHHHHHhcCcccccCCCChHHHHHHHHHHHHhc--CCceEEEEEEeCCcccccCCcccCccchhHH
Q 013848 167 FYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHS--GGQYHVLVIIADGQVTRSVDTEHGQLSSQEK 244 (435)
Q Consensus 167 ~~~~~~~~~G~~gvl~~Yr~~~~~v~l~GPT~fapII~~a~~~~~~~--~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~ 244 (435)
+ -.....++. .+..++..|-|++..-|+.|...++.. ...-..+||++||.+.+ +.+
T Consensus 65 l------T~D~~~il~----aL~~l~~~G~T~l~~gL~~A~~aLk~~~~k~~~~rIIlf~ds~~~~-----------~~~ 123 (268)
T 4b4t_W 65 F------TAEFGKILA----GLHDTQIEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISD-----------SRD 123 (268)
T ss_dssp E------ESCHHHHHH----HHTTCCCCSCCCHHHHHHHHHHHHHTCSCTTSEEEEEEEECSCCSS-----------CHH
T ss_pred C------cchHHHHHH----HhhhcCcCCCCChHHHHHHHHHHHHhcccCCCceEEEEEECCCCCC-----------CHH
Confidence 2 234455554 467788999999999999999988754 23456678889998775 367
Q ss_pred HHHHHHHHhcCCCeEEEEEecCCCCC--CcccccCCCCCccccceeeeecc
Q 013848 245 KTVEAIVKASEYPLSIILVGVGDGPW--DMMREFDDNIPARAFDNFQFVNF 293 (435)
Q Consensus 245 ~T~~aIv~AS~~PLSIIiVGVGd~~f--~~m~~lDd~~~~R~~DnvqFV~f 293 (435)
+.++++.++.+.-++|-+||+|..++ +.|++|=+...+..-|+-+||..
T Consensus 124 ~l~~lak~lkk~gI~v~vIgFG~~~~n~~kLe~l~~~~Ng~~~~~s~~v~v 174 (268)
T 4b4t_W 124 ELIRLAKTLKKNNVAVDIINFGEIEQNTELLDEFIAAVNNPQEETSHLLTV 174 (268)
T ss_dssp HHHHHHHHHHHHTEEEEEEEESSCCSSCCHHHHHHHHHCSSTTTSCEEEEE
T ss_pred HHHHHHHHHHHcCCEEEEEEeCCCccchHHHHHHHHHhcCCCCCceeEEEe
Confidence 88888888888889999999987654 45666632222222377778765
No 75
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=97.95 E-value=5.3e-05 Score=70.04 Aligned_cols=132 Identities=20% Similarity=0.291 Sum_probs=89.9
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccC---CCCccceeeeCCCCCCCCcccccCCC
Q 013848 94 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFD---EDNLIPCFGFGDASTHDQEVFSFYPD 170 (435)
Q Consensus 94 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~yD---~D~~ip~fGFGa~~~~~~~vF~~~~~ 170 (435)
.++++.||-|+|+. .++.+...+..++..++ ++-.+-++.|+.... .+|+|+.
T Consensus 23 ~div~vlD~SgSM~--------------------~~~~~k~~~~~~~~~l~~~~~~~rv~lv~F~~~~~---~~~~l~~- 78 (223)
T 2b2x_A 23 LDIVIVLDGSNSIY--------------------PWESVIAFLNDLLKRMDIGPKQTQVGIVQYGENVT---HEFNLNK- 78 (223)
T ss_dssp EEEEEEEECSTTCC--------------------CHHHHHHHHHHHHTTSCCSTTSCCEEEEEESSSEE---EEECTTT-
T ss_pred ceEEEEEECCCChh--------------------hHHHHHHHHHHHHHhcccCCCCeEEEEEEeCCCcc---EEEecCC-
Confidence 68999999999984 15777777777787776 577899999987532 2355521
Q ss_pred CCccCCHHHHHHHHHHhcCcccc-cC-CCChHHHHHHHHHHH-Hh----cCCceEEEEEEeCCcccccCCcccCccchhH
Q 013848 171 EKFCNGFEEVLRRYRELVPHLRL-AG-PTSFAPIIEMAITIV-EH----SGGQYHVLVIIADGQVTRSVDTEHGQLSSQE 243 (435)
Q Consensus 171 ~~~~~G~~gvl~~Yr~~~~~v~l-~G-PT~fapII~~a~~~~-~~----~~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~ 243 (435)
....+.++++ +..+.. .| -|+....|+.|.+.. .. ....-.++|+||||.-++..
T Consensus 79 ---~~~~~~~~~~----i~~l~~~gG~~T~~~~aL~~a~~~l~~~~~~~~~~~~~~iillTDG~~~~~~----------- 140 (223)
T 2b2x_A 79 ---YSSTEEVLVA----ANKIVQRGGRQTMTALGIDTARKEAFTEARGARRGVKKVMVIVTDGESHDNY----------- 140 (223)
T ss_dssp ---CCSHHHHHHH----HTTCCCCCCSSCCHHHHHHHHHHTTSSGGGTCCTTSEEEEEEEESSCCTTGG-----------
T ss_pred ---CCCHHHHHHH----HHhhhccCCCCccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCCc-----------
Confidence 2345666554 334443 45 499999999998762 21 12345789999999987621
Q ss_pred HHHHHHHHHhcCCCeEEEEEecCCC
Q 013848 244 KKTVEAIVKASEYPLSIILVGVGDG 268 (435)
Q Consensus 244 ~~T~~aIv~AS~~PLSIIiVGVGd~ 268 (435)
...+++..+.+..+-|..||||+.
T Consensus 141 -~~~~~~~~~~~~gi~v~~igvG~~ 164 (223)
T 2b2x_A 141 -RLKQVIQDCEDENIQRFSIAILGH 164 (223)
T ss_dssp -GHHHHHHHHHTTTEEEEEEEECGG
T ss_pred -cHHHHHHHHHHCCCEEEEEEecCc
Confidence 223344445567899999999964
No 76
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.93 E-value=3.2e-06 Score=82.35 Aligned_cols=46 Identities=20% Similarity=0.304 Sum_probs=38.7
Q ss_pred CCCCCCcccccccCCcc-cee-CCCCccchhhhhcCC------CCCc--ccccccc
Q 013848 385 STSDNHVCPICLTDPKD-MAF-GCGHQTCCGCGQDLD------LCPI--CRSFIQT 430 (435)
Q Consensus 385 ~l~e~~~CpICl~~~~d-v~~-~CGH~fC~~C~~~l~------~CPi--CR~~i~~ 430 (435)
....+..||||++.+++ |+. .|||.||..|+..++ .||+ ||+.+..
T Consensus 177 ~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 177 GGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp SSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred CCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 35677899999999999 655 999999999998653 6999 9998754
No 77
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=97.90 E-value=7e-05 Score=68.63 Aligned_cols=132 Identities=17% Similarity=0.275 Sum_probs=88.8
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccC---CCCccceeeeCCCCCCCCcccccCCC
Q 013848 94 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFD---EDNLIPCFGFGDASTHDQEVFSFYPD 170 (435)
Q Consensus 94 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~yD---~D~~ip~fGFGa~~~~~~~vF~~~~~ 170 (435)
.++++.||-|+|+. .++.+...+-.++..++ ++-.+-++.|+.... .+|+|..
T Consensus 8 ~div~vlD~SgSm~--------------------~~~~~k~~~~~~~~~l~~~~~~~~v~lv~F~~~~~---~~~~l~~- 63 (213)
T 1pt6_A 8 LDIVIVLDGSNSIY--------------------PWDSVTAFLNDLLKRMDIGPKQTQVGIVQYGENVT---HEFNLNK- 63 (213)
T ss_dssp EEEEEEEECCTTCC--------------------CHHHHHHHHHHHHTTSCBSTTSBEEEEEEESSSEE---EEECTTT-
T ss_pred ccEEEEEECCCChh--------------------hHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCCcc---EEEeccc-
Confidence 58999999999984 15666666677777765 677899999997542 2355521
Q ss_pred CCccCCHHHHHHHHHHhcCccc-ccC-CCChHHHHHHHHHHH-Hh----cCCceEEEEEEeCCcccccCCcccCccchhH
Q 013848 171 EKFCNGFEEVLRRYRELVPHLR-LAG-PTSFAPIIEMAITIV-EH----SGGQYHVLVIIADGQVTRSVDTEHGQLSSQE 243 (435)
Q Consensus 171 ~~~~~G~~gvl~~Yr~~~~~v~-l~G-PT~fapII~~a~~~~-~~----~~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~ 243 (435)
....+.++++-. .+. ..| -|+....|+.|.+.. .. ....-.++|+||||..++.
T Consensus 64 ---~~~~~~~~~~i~----~l~~~~G~~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~~------------ 124 (213)
T 1pt6_A 64 ---YSSTEEVLVAAK----KIVQRGGRQTMTALGTDTARKEAFTEARGARRGVKKVMVIVTDGESHDN------------ 124 (213)
T ss_dssp ---CSSHHHHHHHHH----TCCCCCCSSCCHHHHHHHHHHTTTSGGGTCCTTCEEEEEEEESSCCSCS------------
T ss_pred ---cCCHHHHHHHHH----hccCCCCCcccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCC------------
Confidence 235566665433 333 356 499999999998753 21 1234688999999998762
Q ss_pred HHHHHHHHHhcCCCeEEEEEecCCC
Q 013848 244 KKTVEAIVKASEYPLSIILVGVGDG 268 (435)
Q Consensus 244 ~~T~~aIv~AS~~PLSIIiVGVGd~ 268 (435)
....+++..+.+..+-|..||||+.
T Consensus 125 ~~~~~~~~~~~~~gi~i~~igig~~ 149 (213)
T 1pt6_A 125 HRLKKVIQDCEDENIQRFSIAILGS 149 (213)
T ss_dssp HHHHHHHHHHHHTTEEEEEEEECHH
T ss_pred ccHHHHHHHHHHCCCEEEEEEeccc
Confidence 1233444445556889999999963
No 78
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=97.89 E-value=1.7e-06 Score=77.55 Aligned_cols=152 Identities=14% Similarity=0.221 Sum_probs=90.6
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccc-cCCCCccceeeeCCCCCCCCcccccCCCCC
Q 013848 94 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSS-FDEDNLIPCFGFGDASTHDQEVFSFYPDEK 172 (435)
Q Consensus 94 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~-yD~D~~ip~fGFGa~~~~~~~vF~~~~~~~ 172 (435)
.++++.||-|+|+.. +..+.|...+..++.. +..+..+-++.|+.... ..++++.
T Consensus 6 ~~vv~vlD~SgSM~~------------------~~~~~~k~~~~~~~~~~~~~~~~v~lv~f~~~~~--~~~~~~~---- 61 (189)
T 2x31_A 6 RVLIFAVDASGSAAV------------------ARLSEAKGAVELLLGRAYAARDHVSLITFRGTAA--QVLLQPS---- 61 (189)
T ss_dssp CEEEEEEECCTTSCC--------------------CHHHHHHHHHHHHHSCTTTSCCCEEEESBSCC--CBCTTTC----
T ss_pred eEEEEEEECCCCCCc------------------hHHHHHHHHHHHHHHHhcCCCcEEEEEEECCCCc--eEecCCC----
Confidence 479999999999941 2334444444445443 36777899999996322 1122221
Q ss_pred ccCCHHHHHHHHHHhcCcccccCCCChHHHHHHHHHHHHhcC--CceEEEEEEeCCcccccCCcccCccchh-HHHHHHH
Q 013848 173 FCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSG--GQYHVLVIIADGQVTRSVDTEHGQLSSQ-EKKTVEA 249 (435)
Q Consensus 173 ~~~G~~gvl~~Yr~~~~~v~l~GPT~fapII~~a~~~~~~~~--~~Y~VLlIiTDG~i~d~~d~~~~~~~~~-~~~T~~a 249 (435)
.+.+.+.+. +..+...|-|++...|+.|.+...+.. +.-.++|+||||..++..+..+.. ++ .++..++
T Consensus 62 --~~~~~~~~~----i~~l~~~g~T~~~~al~~a~~~l~~~~~~~~~~~ivliTDG~~~~~~~~~~~~--~~~~~~~~~~ 133 (189)
T 2x31_A 62 --RSLTQTKRQ----LQGLPGGGGTPLASGMEMAMVTAKQARSRGMTPTIALLTDGRGNIALDGTANR--ELAGEQATKV 133 (189)
T ss_dssp --SCHHHHHHH----HHHCCCCBCCCCHHHHHHHHHHHHTCTTTCSSEEEEECCBSCCSSCCTHHHHH--GGGTCCCEEE
T ss_pred --CCHHHHHHH----HhcCCCCCCCCHHHHHHHHHHHHHhccCCCCceEEEEECCCCCCCCCCccccc--cchhHHHHHH
Confidence 245554443 334556789999999999999887642 235788999999987532100000 00 0011122
Q ss_pred HHHhcCCCeEEEEEecCCCCCCcccccC
Q 013848 250 IVKASEYPLSIILVGVGDGPWDMMREFD 277 (435)
Q Consensus 250 Iv~AS~~PLSIIiVGVGd~~f~~m~~lD 277 (435)
+..+.+..+.|+.||+|+.+...|+++-
T Consensus 134 ~~~~~~~gi~v~~ig~g~~~~~~L~~iA 161 (189)
T 2x31_A 134 ARAIRASGMPAVIIDTAMRPNPALVDLA 161 (189)
T ss_dssp EECTGGGGSCCTHHHHHHSSCSSSCSTT
T ss_pred HHHHHHcCCeEEEEecCCCCHHHHHHHH
Confidence 2233345678888999988666666663
No 79
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=97.87 E-value=3.5e-05 Score=79.23 Aligned_cols=153 Identities=13% Similarity=0.152 Sum_probs=99.3
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccc---cCCCCccceeeeCCCCCCCCcccccCCC
Q 013848 94 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSS---FDEDNLIPCFGFGDASTHDQEVFSFYPD 170 (435)
Q Consensus 94 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~---yD~D~~ip~fGFGa~~~~~~~vF~~~~~ 170 (435)
+++++.||-|+|++ .+.++.|...+..++.. +..+-.+-++.|++... .++.| .
T Consensus 2 ~div~vlD~SgSM~------------------~~~~~~~k~~~~~~~~~l~~~~~~~~v~lv~f~~~~~---~~~~~--~ 58 (497)
T 1rrk_A 2 MNIYLVLDGSDSIG------------------ASNFTGAKKVLVNLIEKVASYGVKPRYGLVTYATYPK---IWVKV--S 58 (497)
T ss_dssp EEEEEEEECSTTTC------------------HHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEE---EEECT--T
T ss_pred eeEEEEEECCCCcc------------------hhhHHHHHHHHHHHHHHhhccCCCceEEEEEecCCce---Eeecc--c
Confidence 57999999999995 14566666666666654 45567899999997532 22333 2
Q ss_pred CCccCCHHHHHHHHHHhcCcc-cccCCCChHHHHHHHHHHHHhc--------CCceEEEEEEeCCcccccCCcccCccch
Q 013848 171 EKFCNGFEEVLRRYRELVPHL-RLAGPTSFAPIIEMAITIVEHS--------GGQYHVLVIIADGQVTRSVDTEHGQLSS 241 (435)
Q Consensus 171 ~~~~~G~~gvl~~Yr~~~~~v-~l~GPT~fapII~~a~~~~~~~--------~~~Y~VLlIiTDG~i~d~~d~~~~~~~~ 241 (435)
.+.-...+.++++-.++-+.. ...|.|+....|+.|.+..... ...-.++++||||.-++..|
T Consensus 59 ~~~~~~~~~~~~~l~~l~~~~~~~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~-------- 130 (497)
T 1rrk_A 59 EADSSNADWVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGD-------- 130 (497)
T ss_dssp SGGGGCHHHHHHHHHHCCGGGSCCTTCCCHHHHHHHHHHHHCCC------CGGGCEEEEEEEECSCCCSSSC--------
T ss_pred cccccCHHHHHHHHHhCcCccccccCccCHHHHHHHHHHHhhhhhccccccccccceEEEEEeCCCcccCCC--------
Confidence 233345666666655443322 2568899999999999887321 12457899999998775222
Q ss_pred hHHHHHHHHHHhc----------CCCeEEEEEecCC-CCCCcccccCC
Q 013848 242 QEKKTVEAIVKAS----------EYPLSIILVGVGD-GPWDMMREFDD 278 (435)
Q Consensus 242 ~~~~T~~aIv~AS----------~~PLSIIiVGVGd-~~f~~m~~lDd 278 (435)
..+..+.+.+.. +..+-|..||||+ .+.+.|++|-.
T Consensus 131 -~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~igvG~~~~~~~L~~iA~ 177 (497)
T 1rrk_A 131 -PITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGPLVNQVNINALAS 177 (497)
T ss_dssp -THHHHHHHHHHTTCSSCC-CCCGGGEEEEEEECSSSCCHHHHHHHSC
T ss_pred -hhHHHHHHHHHhhhhcccccchhcCeeEEEecCCCccCHHHHHHHhc
Confidence 345555555441 2278899999997 45566666644
No 80
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=97.84 E-value=3.4e-06 Score=76.05 Aligned_cols=142 Identities=18% Similarity=0.232 Sum_probs=91.5
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCC-CCccceeeeCCCCCCCCcccccCCCCC
Q 013848 94 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDE-DNLIPCFGFGDASTHDQEVFSFYPDEK 172 (435)
Q Consensus 94 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~yD~-D~~ip~fGFGa~~~~~~~vF~~~~~~~ 172 (435)
.++++.||-|+|++. ..++++...+..++..|+. +-.+-++.|+.... .+|+|+...
T Consensus 6 ~div~vlD~SgSm~~------------------~~~~~~k~~~~~~~~~l~~~~~~v~vv~f~~~~~---~~~~l~~~~- 63 (194)
T 1mf7_A 6 SDIAFLIDGSGSIIP------------------HDFRRMKEFVSTVMEQLKKSKTLFSLMQYSEEFR---IHFTFKEFQ- 63 (194)
T ss_dssp EEEEEEEECCTTSCH------------------HHHHHHHHHHHHHHHHHCCTTEEEEEEEESSSEE---EEECHHHHH-
T ss_pred eeEEEEEeCCCCCCH------------------HHHHHHHHHHHHHHHhcCCCCeEEEEEEecCCce---EEEecCCcC-
Confidence 589999999999951 3567777777777877763 45899999988642 234443210
Q ss_pred ccCCHHHHHHHHHHhcCccc-ccCCCChHHHHHHHHHHH-Hh-c---CCceEEEEEEeCCccc-ccCCcccCccchhHHH
Q 013848 173 FCNGFEEVLRRYRELVPHLR-LAGPTSFAPIIEMAITIV-EH-S---GGQYHVLVIIADGQVT-RSVDTEHGQLSSQEKK 245 (435)
Q Consensus 173 ~~~G~~gvl~~Yr~~~~~v~-l~GPT~fapII~~a~~~~-~~-~---~~~Y~VLlIiTDG~i~-d~~d~~~~~~~~~~~~ 245 (435)
.-..+. +.+..+. ..|-|+....|+.|.+.. .. . .+.-.++|+||||..+ |..+ ..+
T Consensus 64 ~~~~~~-------~~i~~l~~~~g~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~d~~~---------~~~ 127 (194)
T 1mf7_A 64 NNPNPR-------SLVKPITQLLGRTHTATGIRKVVRELFNITNGARKNAFKILVVITDGEKFGDPLG---------YED 127 (194)
T ss_dssp HSCCHH-------HHHTTCCCCCSCBCHHHHHHHHHHTTTSGGGTCCTTSEEEEEEEESSCCBSCSSC---------GGG
T ss_pred CHHHHH-------HHHHhCcCCCCCchHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCCchh---------hHH
Confidence 001222 2334455 478999999999998643 22 1 1245899999999987 4221 122
Q ss_pred HHHHHHHhcCCCeEEEEEecCCCC-----CCccccc
Q 013848 246 TVEAIVKASEYPLSIILVGVGDGP-----WDMMREF 276 (435)
Q Consensus 246 T~~aIv~AS~~PLSIIiVGVGd~~-----f~~m~~l 276 (435)
++.++-+..+.|..||||+.. .+.|+++
T Consensus 128 ---~~~~~~~~gi~v~~igvG~~~~~~~~~~~L~~i 160 (194)
T 1mf7_A 128 ---VIPEADREGVIRYVIGVGDAFRSEKSRQELNTI 160 (194)
T ss_dssp ---THHHHHHTTEEEEEEEESGGGCSHHHHHHHHHH
T ss_pred ---HHHHHHHCCCEEEEEEecccccccccHHHHHHH
Confidence 233344568999999999853 3455554
No 81
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=97.81 E-value=7e-05 Score=80.79 Aligned_cols=150 Identities=12% Similarity=0.115 Sum_probs=97.0
Q ss_pred eeceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhccccc---CCCCccceeeeCCCCCCCCcccccCC
Q 013848 93 SSNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSF---DEDNLIPCFGFGDASTHDQEVFSFYP 169 (435)
Q Consensus 93 ~~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~y---D~D~~ip~fGFGa~~~~~~~vF~~~~ 169 (435)
.+++++.||-|+|++. +.+++|...+..++..+ +..-+|-++-|+.... .+|.|+.
T Consensus 243 ~~div~vlD~SgSM~~------------------~~~~~~k~~~~~~i~~l~~~~~~~rv~lv~f~~~~~---~~~~l~~ 301 (741)
T 3hrz_D 243 SMNIYLVLDGSGSIGA------------------SDFTGAKKCLVNLIEKVASYGVKPRYGLVTYATYPK---IWVKVSE 301 (741)
T ss_dssp EEEEEEEEECSTTTCH------------------HHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEE---EEECTTS
T ss_pred ceeEEEEeccCCcccc------------------cchHHHHHHHHHHHHhhhccCCCceEEEEEeccCCc---eeEeecc
Confidence 3689999999999952 33555555555555544 4556799999987532 2344433
Q ss_pred CCCccCCHHHHHHHHHHhcCccc-----ccCCCChHHHHHHHHHHHHh--------cCCceEEEEEEeCCcccccCCccc
Q 013848 170 DEKFCNGFEEVLRRYRELVPHLR-----LAGPTSFAPIIEMAITIVEH--------SGGQYHVLVIIADGQVTRSVDTEH 236 (435)
Q Consensus 170 ~~~~~~G~~gvl~~Yr~~~~~v~-----l~GPT~fapII~~a~~~~~~--------~~~~Y~VLlIiTDG~i~d~~d~~~ 236 (435)
. .-...+.++++ +..+. ..|-|+....|+.|.+.... ....-.|+|+||||+-+.-.
T Consensus 302 ~--~~~~~~~~~~~----i~~l~~~~~~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~n~g~---- 371 (741)
T 3hrz_D 302 A--DSSNADWVTKQ----LNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGG---- 371 (741)
T ss_dssp G--GGGCHHHHHHH----HTTCCGGGGSSSCCCCHHHHHHHHHHHHCCC--CCCTTGGGEEEEEEEEECSCCCSSS----
T ss_pred c--CCcCHHHHHHH----HHhcccccccCCCChHHHHHHHHHHHHHhhhhhccccchhccCeEEEEECCCccccCC----
Confidence 1 11345555554 44444 67899999999999988721 11235789999999876421
Q ss_pred CccchhHHHHHHHHH----------HhcCCCeEEEEEecCC-CCCCcccccCC
Q 013848 237 GQLSSQEKKTVEAIV----------KASEYPLSIILVGVGD-GPWDMMREFDD 278 (435)
Q Consensus 237 ~~~~~~~~~T~~aIv----------~AS~~PLSIIiVGVGd-~~f~~m~~lDd 278 (435)
+....++.|. ++.+..+-|..||||+ .+.+.|++|-.
T Consensus 372 -----~p~~~~~~i~~~~~~~~~a~~~~~~gi~i~~igvG~~~~~~~L~~ia~ 419 (741)
T 3hrz_D 372 -----DPITVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGPLVNQVNINALAS 419 (741)
T ss_dssp -----CTHHHHHHHHHHTTCSSCTTCCCGGGEEEEEEECSSSCCHHHHHHHSC
T ss_pred -----CchHHHHHHHHHhhcccccccccccCeeEEEEeCCCcCCHHHHHHHhc
Confidence 1344555555 3445678999999997 56666666644
No 82
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=97.81 E-value=0.0002 Score=66.05 Aligned_cols=163 Identities=14% Similarity=0.199 Sum_probs=105.8
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhccccc---CCCCccceeeeCCCCCCCCcccccCCCC
Q 013848 95 NLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSF---DEDNLIPCFGFGDASTHDQEVFSFYPDE 171 (435)
Q Consensus 95 nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~y---D~D~~ip~fGFGa~~~~~~~vF~~~~~~ 171 (435)
.++++||.|.|+...+ -.+|-.+.|...+-.++..| .....+-+..|++...+. +.+++
T Consensus 4 ~lvlvlD~S~SM~~~D-------------~~psRl~~ak~~~~~~~~~~~~~~~~d~vGLV~fa~~~a~~--~~plT--- 65 (192)
T 2x5n_A 4 ATMILIDNSEWMINGD-------------YIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQV--LSTLT--- 65 (192)
T ss_dssp EEEEEECCSGGGGCTT-------------SSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCCE--EEEEE---
T ss_pred EEEEEEECCHhhccCC-------------CCCCHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCcEE--ecCCC---
Confidence 5899999999996421 13788998888777766554 445689999998742211 12332
Q ss_pred CccCCHHHHHHHHHHhcCcccccCCCChHHHHHHHHHHHHhcC--Cce-EEEEEEeCCcccccCCcccCccchhHHHHHH
Q 013848 172 KFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSG--GQY-HVLVIIADGQVTRSVDTEHGQLSSQEKKTVE 248 (435)
Q Consensus 172 ~~~~G~~gvl~~Yr~~~~~v~l~GPT~fapII~~a~~~~~~~~--~~Y-~VLlIiTDG~i~d~~d~~~~~~~~~~~~T~~ 248 (435)
.+.+.+++ .+..+...|.|++..-|+.|.+..++.. ... -|+|+++|+. ++ +..+..+
T Consensus 66 ---~d~~~i~~----~L~~l~~~g~t~l~~aL~~A~~~l~~~~~~~~~~riiil~~~~~-~~-----------~~~~~~~ 126 (192)
T 2x5n_A 66 ---RDYGKFLS----AMHDLPVRGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPI-VE-----------DEKNLIR 126 (192)
T ss_dssp ---SCHHHHHH----HHTTCCCCSCCCHHHHHHHHHHHHHTCSCTTSEEEEEEEECSCC-SS-----------CHHHHHH
T ss_pred ---CCHHHHHH----HHHcCCCCCCchHHHHHHHHHHHHHhccccCCCceEEEEEECCC-CC-----------CchhHHH
Confidence 23444444 3455778899999999999998887643 223 3455555544 32 2556667
Q ss_pred HHHHhcCCCeEEEEEecCCCCCCc-ccccCCCCCccccceeeeeccccc
Q 013848 249 AIVKASEYPLSIILVGVGDGPWDM-MREFDDNIPARAFDNFQFVNFTEI 296 (435)
Q Consensus 249 aIv~AS~~PLSIIiVGVGd~~f~~-m~~lDd~~~~R~~DnvqFV~f~~~ 296 (435)
++..+.+.-+.|.+||+|..+.+. |++|=+... .-||-+||...+-
T Consensus 127 ~a~~lk~~gi~v~~Ig~G~~~~~~~l~~la~~~n--~~~~s~~~~~~~~ 173 (192)
T 2x5n_A 127 LAKRMKKNNVAIDIIHIGELQNESALQHFIDAAN--SSDSCHLVSIPPS 173 (192)
T ss_dssp HHHHHHHTTEEEEEEEESCC---CHHHHHHHHHC--STTCCEEEEECCC
T ss_pred HHHHHHHCCCEEEEEEeCCCCccHHHHHHHHhcc--CCCceEEEEecCc
Confidence 777778889999999999876532 776643211 1277888865443
No 83
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=97.77 E-value=0.00022 Score=64.55 Aligned_cols=131 Identities=15% Similarity=0.176 Sum_probs=89.4
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccC---CCCccceeeeCCCCCCCCcccccCCC
Q 013848 94 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFD---EDNLIPCFGFGDASTHDQEVFSFYPD 170 (435)
Q Consensus 94 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~yD---~D~~ip~fGFGa~~~~~~~vF~~~~~ 170 (435)
.++++.||-|.|+. | ++++...+..++..++ ++-.+-++.|+.... .+|+|+.
T Consensus 7 ~div~vlD~SgSm~-------------------~-~~~~k~~~~~~~~~l~~~~~~~rvglv~f~~~~~---~~~~l~~- 62 (200)
T 1v7p_C 7 IDVVVVCDESNSIY-------------------P-WDAVKNFLEKFVQGLDIGPTKTQVGLIQYANNPR---VVFNLNT- 62 (200)
T ss_dssp EEEEEEEECCTTCC-------------------C-HHHHHHHHHHHHHTSCBSTTSEEEEEEEESSSEE---EEECTTT-
T ss_pred ccEEEEEECCCCcc-------------------c-HHHHHHHHHHHHHhcCCCCCceEEEEEEECCCce---EEEeCCC-
Confidence 58999999999983 1 5677777777888776 567899999987532 2456642
Q ss_pred CCccCCHHHHHHHHHHhcCcccc-cC-CCChHHHHHHHHHH-HHhc----CCceEEEEEEeCCcccccCCcccCccchhH
Q 013848 171 EKFCNGFEEVLRRYRELVPHLRL-AG-PTSFAPIIEMAITI-VEHS----GGQYHVLVIIADGQVTRSVDTEHGQLSSQE 243 (435)
Q Consensus 171 ~~~~~G~~gvl~~Yr~~~~~v~l-~G-PT~fapII~~a~~~-~~~~----~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~ 243 (435)
....+.++++-.. +.. .| -|+....|+.|.+. .... ...-.++|+||||..++.. +.
T Consensus 63 ---~~~~~~~~~~i~~----l~~~~G~~T~~~~al~~a~~~~~~~~~g~r~~~~~~ivllTDG~~~~~~---------~~ 126 (200)
T 1v7p_C 63 ---YKTKEEMIVATSQ----TSQYGGDLTNTFGAIQYARKYAYSAASGGRRSATKVMVVVTDGESHDGS---------ML 126 (200)
T ss_dssp ---CSSHHHHHHHHHH----CCCCCCSCCCHHHHHHHHHHHTTSGGGTCCTTSEEEEEEEESSCCSCGG---------GH
T ss_pred ---cCCHHHHHHHHHh----hhccCCCCCcHHHHHHHHHHhhcccccCCCCCCCeEEEEEccCCCCCcc---------cH
Confidence 2356666665443 333 35 59999999999885 3221 2345789999999987621 12
Q ss_pred HHHHHHHHHhcCCCeEEEEEecCC
Q 013848 244 KKTVEAIVKASEYPLSIILVGVGD 267 (435)
Q Consensus 244 ~~T~~aIv~AS~~PLSIIiVGVGd 267 (435)
.+ ++.++-+..+-|..||||+
T Consensus 127 ~~---~~~~~~~~gi~i~~igvg~ 147 (200)
T 1v7p_C 127 KA---VIDQCNHDNILRFGIAVLG 147 (200)
T ss_dssp HH---HHHHHHHTTEEEEEEEECH
T ss_pred HH---HHHHHHHCCCEEEEEEecc
Confidence 33 3444445788999999964
No 84
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.70 E-value=1.3e-05 Score=67.88 Aligned_cols=42 Identities=24% Similarity=0.415 Sum_probs=33.1
Q ss_pred CCCcccccccCCccc------------------e-eCCCCccchhhhhcC----CCCCccccccc
Q 013848 388 DNHVCPICLTDPKDM------------------A-FGCGHQTCCGCGQDL----DLCPICRSFIQ 429 (435)
Q Consensus 388 e~~~CpICl~~~~dv------------------~-~~CGH~fC~~C~~~l----~~CPiCR~~i~ 429 (435)
++..|.||++.+.+. + ++|+|.|+..|+..| ..||+||+.+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 456899998876531 2 499999999999876 47999999853
No 85
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.66 E-value=8.7e-06 Score=66.50 Aligned_cols=40 Identities=23% Similarity=0.490 Sum_probs=31.7
Q ss_pred CCCcccccccCCcc-ce--e-CCCCccchhhhhcC------------CCCCc--cccc
Q 013848 388 DNHVCPICLTDPKD-MA--F-GCGHQTCCGCGQDL------------DLCPI--CRSF 427 (435)
Q Consensus 388 e~~~CpICl~~~~d-v~--~-~CGH~fC~~C~~~l------------~~CPi--CR~~ 427 (435)
+...|+||++.+.+ .. + +|||.||.+|+... ..||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 45789999998876 33 3 79999999998521 37999 9988
No 86
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.60 E-value=4.1e-05 Score=61.60 Aligned_cols=47 Identities=26% Similarity=0.549 Sum_probs=36.4
Q ss_pred CCCCcccccccCCcc---ceeCCC-----CccchhhhhcC------CCCCccccccccccc
Q 013848 387 SDNHVCPICLTDPKD---MAFGCG-----HQTCCGCGQDL------DLCPICRSFIQTRIK 433 (435)
Q Consensus 387 ~e~~~CpICl~~~~d---v~~~CG-----H~fC~~C~~~l------~~CPiCR~~i~~~ir 433 (435)
.++..|.||++.+.+ ++++|. |.|...|+.+| ..||+||..+....+
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~ 73 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETK 73 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcc
Confidence 355689999987643 445996 99999999877 379999998865443
No 87
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.58 E-value=1.1e-05 Score=69.68 Aligned_cols=41 Identities=24% Similarity=0.399 Sum_probs=0.4
Q ss_pred CCcccccccCCcc------------------ce-eCCCCccchhhhhcCC----CCCccccccc
Q 013848 389 NHVCPICLTDPKD------------------MA-FGCGHQTCCGCGQDLD----LCPICRSFIQ 429 (435)
Q Consensus 389 ~~~CpICl~~~~d------------------v~-~~CGH~fC~~C~~~l~----~CPiCR~~i~ 429 (435)
+..|.||++.+.+ ++ .+|+|.|+..|+..|. .||+||.++.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp C---------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 4589999988754 12 3899999999998873 7999999853
No 88
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Probab=97.37 E-value=0.00013 Score=66.41 Aligned_cols=138 Identities=9% Similarity=0.206 Sum_probs=92.8
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccC---CCCccceeeeCCCCCCCCcccccCCC
Q 013848 94 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFD---EDNLIPCFGFGDASTHDQEVFSFYPD 170 (435)
Q Consensus 94 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~yD---~D~~ip~fGFGa~~~~~~~vF~~~~~ 170 (435)
.++++.||-|.|++ .+.++++...+-.++..|+ ++-.|-+..|+.... .+|+|+.
T Consensus 22 ~DivfvlD~S~Sm~------------------~~~~~~~k~~~~~~~~~l~~~~~~~rv~vv~fs~~~~---~~~~l~~- 79 (199)
T 3zqk_A 22 LDVAFVLEGSDKIG------------------EADFNRSKEFMEEVIQRMDVGQDSIHVTVLQYSYMVT---VEYPFSE- 79 (199)
T ss_dssp CEEEEEEECCTTTC------------------HHHHHHHHHHHHHHHHHSCBSTTSBEEEEEEESSSEE---EEECTTS-
T ss_pred cCEEEEEECCCCCC------------------HHHHHHHHHHHHHHHHhcCCCCCceEEEEEEECCccc---EEEecCC-
Confidence 58999999999985 2456777777777888885 567899999998643 2455542
Q ss_pred CCccCCHHHHHHHHHHhcCcccccCC-CChHHHHHHHHHHH-Hh-cC---CceEEEEEEeCCcccccCCcccCccchhHH
Q 013848 171 EKFCNGFEEVLRRYRELVPHLRLAGP-TSFAPIIEMAITIV-EH-SG---GQYHVLVIIADGQVTRSVDTEHGQLSSQEK 244 (435)
Q Consensus 171 ~~~~~G~~gvl~~Yr~~~~~v~l~GP-T~fapII~~a~~~~-~~-~~---~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~ 244 (435)
....+.++++-.++ +. ..|. |+....|+.|.+.. .. .+ +.-.++|+||||...|.+.
T Consensus 80 ---~~~~~~~~~~i~~l-~~--~gg~~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~~d~v~----------- 142 (199)
T 3zqk_A 80 ---AQSKGDILQRLREI-RY--QGGNRTNTGLALRYLSDHSFLVSQGDREQAPNLVYMVTGNPASDEIK----------- 142 (199)
T ss_dssp ---CCCHHHHHHHHHHC-CC--CCCSCCCHHHHHHHCCCCCTCGGGTCCTTSCEEEEEEECSCCSSCCC-----------
T ss_pred ---cCCHHHHHHHHHhC-cC--CCCCcChHHHHHHHHHHHhhCcccCCCCCCCeEEEEEeCCCCchHHH-----------
Confidence 23456666654442 21 3454 99999888887642 11 11 2347999999998776221
Q ss_pred HHHHHHHHhcCCCeEEEEEecC-CCCCCcccccCC
Q 013848 245 KTVEAIVKASEYPLSIILVGVG-DGPWDMMREFDD 278 (435)
Q Consensus 245 ~T~~aIv~AS~~PLSIIiVGVG-d~~f~~m~~lDd 278 (435)
++ ...+.|.-|||| +.+.+.|+++-.
T Consensus 143 -------~~-~~~v~v~~iGiG~~~~~~~L~~iA~ 169 (199)
T 3zqk_A 143 -------RL-PGDIQVVPIGVGPNANVQELERIGW 169 (199)
T ss_dssp -------CC-CTTEEEEEEEESTTCCHHHHHHHHT
T ss_pred -------HH-hCCCEEEEEEcCCCCCHHHHHHHhC
Confidence 01 256889999999 667777777643
No 89
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.15 E-value=0.00013 Score=55.59 Aligned_cols=42 Identities=12% Similarity=0.058 Sum_probs=36.4
Q ss_pred CCcccccccCCcc-cee-CCCCccchhhhhcC----CCCCcccccccc
Q 013848 389 NHVCPICLTDPKD-MAF-GCGHQTCCGCGQDL----DLCPICRSFIQT 430 (435)
Q Consensus 389 ~~~CpICl~~~~d-v~~-~CGH~fC~~C~~~l----~~CPiCR~~i~~ 430 (435)
...|+||++.+.| ++. +|||.||.+|+.+| ..||++++++..
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~ 50 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSI 50 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCCh
Confidence 3689999999999 667 89999999999877 379999998864
No 90
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=97.14 E-value=0.0011 Score=59.15 Aligned_cols=137 Identities=18% Similarity=0.248 Sum_probs=86.8
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCCCC-ccceeeeCCCCCCCCcccccCCCCC
Q 013848 94 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDN-LIPCFGFGDASTHDQEVFSFYPDEK 172 (435)
Q Consensus 94 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~yD~D~-~ip~fGFGa~~~~~~~vF~~~~~~~ 172 (435)
.++++.||-|+|++ ...++++...+..++..++.++ .+-+..|+.... .+|+|+...
T Consensus 3 ~divfvlD~S~Sm~------------------~~~~~~~k~~~~~~~~~l~~~~~rv~vv~fs~~~~---~~~~l~~~~- 60 (179)
T 1mjn_A 3 VDLVFLFDGSMSLQ------------------PDEFQKILDFMKDVMKKCSNTSYQFAAVQFSTSYK---TEFDFSDYV- 60 (179)
T ss_dssp EEEEEEEECBTTCC------------------HHHHHHHHHHHHHHHHHTTTSSEEEEEEEESSSEE---EEECHHHHH-
T ss_pred ccEEEEEeCCCCCC------------------HHHHHHHHHHHHHHHHHhCCCCeEEEEEEECCcee---EEEcCcccC-
Confidence 57999999999985 1346777777777888886554 799999987543 234443210
Q ss_pred ccCCHHHHHHHHHHhcCcccccCCCChHHHHHHHHHHH-Hhc----CCceEEEEEEeCCcccccCCcccCccchhHHHHH
Q 013848 173 FCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIV-EHS----GGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTV 247 (435)
Q Consensus 173 ~~~G~~gvl~~Yr~~~~~v~l~GPT~fapII~~a~~~~-~~~----~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~T~ 247 (435)
.-..++.+++ .++. +.|-|+....|+.|.+.. ... .+.-.++++||||..++..+ +
T Consensus 61 ~~~~~~~~~~----~i~~--~~g~T~~~~aL~~a~~~~~~~~~g~r~~~~~~iillTDG~~~~~~~-----~-------- 121 (179)
T 1mjn_A 61 KRKDPDALLK----HVKH--MLLLTNTFGAINYVATEVFREELGARPDATKVLIIITDGEATDSGN-----I-------- 121 (179)
T ss_dssp HHCCHHHHHT----TCCC--CCBCCCHHHHHHHHHHHTSSGGGTCCTTSEEEEEEEESSCCSSCSC-----C--------
T ss_pred CHHHHHHHHH----hccc--CCCCChHHHHHHHHHHHhcccccCCCCCCCeEEEEEcCCCCCCCcc-----h--------
Confidence 0012333322 2333 458899999999998642 221 23457999999999886321 0
Q ss_pred HHHHHhcCCCeEEEEEecCCCCC-----Cccccc
Q 013848 248 EAIVKASEYPLSIILVGVGDGPW-----DMMREF 276 (435)
Q Consensus 248 ~aIv~AS~~PLSIIiVGVGd~~f-----~~m~~l 276 (435)
.+ ..-+-|..||||+..- +.|+.+
T Consensus 122 ---~~--~~~i~i~~igvG~~~~~~~~~~~L~~i 150 (179)
T 1mjn_A 122 ---DA--AKDIIRYIIGIGKHFQTKESQETLHKF 150 (179)
T ss_dssp ---GG--GTTSEEEEEEESGGGCSHHHHHTTGGG
T ss_pred ---HH--HCCCEEEEEEccccccccccHHHHHHH
Confidence 02 2357788899997532 455555
No 91
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=97.14 E-value=0.0033 Score=67.54 Aligned_cols=158 Identities=13% Similarity=0.244 Sum_probs=102.9
Q ss_pred hcCCceeceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccc---cCCCCccceeeeCCCCCC----
Q 013848 88 RAGLESSNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSS---FDEDNLIPCFGFGDASTH---- 160 (435)
Q Consensus 88 ~~Gl~~~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~---yD~D~~ip~fGFGa~~~~---- 160 (435)
.+|-+ .++++||.|.|+.... + +...+..+.|++.|..+++. -.....|-++.||...+.
T Consensus 32 ~~~ke--~ivf~IDvS~SM~~~d---~--------~~~~srl~~a~~~v~~~i~~kii~~~~D~vGlVlfgt~~t~n~l~ 98 (609)
T 1jey_A 32 YSGRD--SLIFLVDASKAMFESQ---S--------EDELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYGTEKDKNSVN 98 (609)
T ss_dssp --CEE--EEEEEEECSGGGGCCC---S--------SSSCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTC
T ss_pred ccCce--EEEEEEECCHHHcCCC---C--------CCCCChHHHHHHHHHHHHHHhhCCCCCCeEEEEEEccCCCCCcCC
Confidence 34555 4999999999995321 1 12478999999999998885 344569999999987642
Q ss_pred CCcccccCC-CCCccCCHHHHHHH------------HHHhcCcccccCCCChHHHHHHHHHHHHhcCCc--eEEEEEEeC
Q 013848 161 DQEVFSFYP-DEKFCNGFEEVLRR------------YRELVPHLRLAGPTSFAPIIEMAITIVEHSGGQ--YHVLVIIAD 225 (435)
Q Consensus 161 ~~~vF~~~~-~~~~~~G~~gvl~~------------Yr~~~~~v~l~GPT~fapII~~a~~~~~~~~~~--Y~VLlIiTD 225 (435)
..+++-+.+ +.+ +.+ .+.. +...++. ...|.+...|-.|+++.+....+ =-++++|||
T Consensus 99 ~d~i~v~~~L~~~---~~~-~ik~l~~l~~~~~~~~~~~~~g~---~~~t~l~daL~~a~~~f~~~~~k~~~k~IiL~TD 171 (609)
T 1jey_A 99 FKNIYVLQELDNP---GAK-RILELDQFKGQQGQKRFQDMMGH---GSDYSLSEVLWVCANLFSDVQFKMSHKRIMLFTN 171 (609)
T ss_dssp CTTEEEEEEEECC---CHH-HHHHHHTTSHHHHHHHHHHHHCC---SCCCCHHHHHHHHHHHHHTCSSCEEEEEEEEEES
T ss_pred CCCeEEEecCCCC---CHH-HHHHHHHHhhcccchhhhhhcCC---CCCCCHHHHHHHHHHHHHhhchhhcCCEEEEEcC
Confidence 123332222 111 222 1222 2222222 45799999999999998765333 358899999
Q ss_pred CcccccCCcccCccchhHHHHHHHHHHhcCCCeEEEEEecCCCC-CC
Q 013848 226 GQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGDGP-WD 271 (435)
Q Consensus 226 G~i~d~~d~~~~~~~~~~~~T~~aIv~AS~~PLSIIiVGVGd~~-f~ 271 (435)
|.-. ++.-+..+.....++..+.++-+.|.+||||..+ |+
T Consensus 172 g~~p------~~~~~~~~~~~~~~a~~l~~~gI~i~~igig~~~~fd 212 (609)
T 1jey_A 172 EDNP------HGNDSAKASRARTKAGDLRDTGIFLDLMHLKKPGGFD 212 (609)
T ss_dssp CSCT------TTTCHHHHHHHHHHHHHHHHHTEEEEEEEBCCTTCCC
T ss_pred CCCC------CCCchHHHHHHHHHHHHHHhcCcEEEEEecCCCCccc
Confidence 9753 2222223456677778888999999999999753 54
No 92
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=96.99 E-value=0.00052 Score=78.57 Aligned_cols=142 Identities=19% Similarity=0.293 Sum_probs=95.5
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCCC-CccceeeeCCCCCCCCcccccCC--C
Q 013848 94 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDED-NLIPCFGFGDASTHDQEVFSFYP--D 170 (435)
Q Consensus 94 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~yD~D-~~ip~fGFGa~~~~~~~vF~~~~--~ 170 (435)
+++++.||-|+|++ .+.++++...+..+++.|+.+ -.|-+..|+.... .+|.|+. +
T Consensus 131 ~DIvfvlD~SgSm~------------------~~~f~~~k~fv~~lv~~~~~~~~rVglV~Fs~~~~---~~~~lt~~~~ 189 (1095)
T 3k6s_A 131 QDIVFLIDGSGSIS------------------SRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQ---THFTFEEFRR 189 (1095)
T ss_dssp EEEEEEEECCTTSC------------------SHHHHHHHHHHHHHHHSSCSSSEEEEEEEESSSEE---EEECSHHHHS
T ss_pred ccEEEEEcCCCCCC------------------hhHHHHHHHHHHHHHHhccccccEEEEEEECCeEE---EEecCcccCC
Confidence 68999999999985 356888888888899999866 5899999987642 2344432 1
Q ss_pred CCccCCHHHHHHHHHHhcCcc-cccCCCChHHHHHHHHHHHH-hc----CCceEEEEEEeCCccc-ccCCcccCccchhH
Q 013848 171 EKFCNGFEEVLRRYRELVPHL-RLAGPTSFAPIIEMAITIVE-HS----GGQYHVLVIIADGQVT-RSVDTEHGQLSSQE 243 (435)
Q Consensus 171 ~~~~~G~~gvl~~Yr~~~~~v-~l~GPT~fapII~~a~~~~~-~~----~~~Y~VLlIiTDG~i~-d~~d~~~~~~~~~~ 243 (435)
.. .+. +++..+ .+.|-|+.+..|+.|.+.+- +. .+.-.|+|+||||..+ |.. +.
T Consensus 190 ~~---~l~-------~ai~~i~~~gG~T~~g~AL~~a~~~lf~~~~g~R~~~~kviIllTDG~~~~d~~---------~~ 250 (1095)
T 3k6s_A 190 SS---NPL-------SLLASVHQLQGFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGDSL---------DY 250 (1095)
T ss_dssp CS---CGG-------GGTTTCCCCCSCBCHHHHHHHHHTTTTSTTTTCCSSSEEEEEEEESSCCBSCSS---------CH
T ss_pred HH---HHH-------HHHhhhhcccCCChHHHHHHHHHHhhccccccCCCCCCeEEEEEeCCCcCCCch---------hH
Confidence 11 111 223333 45788999999999977542 11 1235799999999984 321 13
Q ss_pred HHHHHHHHHhcCCCeEEEEEecCCC-----CCCcccccCC
Q 013848 244 KKTVEAIVKASEYPLSIILVGVGDG-----PWDMMREFDD 278 (435)
Q Consensus 244 ~~T~~aIv~AS~~PLSIIiVGVGd~-----~f~~m~~lDd 278 (435)
.+. +.+|-+.-+-|..||||+. +.+.|+++-+
T Consensus 251 ~~~---a~~~r~~GI~i~aIGVG~~~~~~~d~~eL~~IAs 287 (1095)
T 3k6s_A 251 KDV---IPMADAAGIIRYAIGVGLAFQNRNSWKELNDIAS 287 (1095)
T ss_dssp HHH---HHHHHHHCEEECCEEBSSGGGSTTSSHHHHTTSC
T ss_pred HHH---HHHHHHCCCEEEEEecccccccccCHHHHHHHHc
Confidence 333 4444445788999999986 6666666644
No 93
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=96.92 E-value=0.00038 Score=58.49 Aligned_cols=41 Identities=27% Similarity=0.518 Sum_probs=32.7
Q ss_pred cccccccCCcc--ceeCCCCccchhhhhc-----CCCCCccccccccc
Q 013848 391 VCPICLTDPKD--MAFGCGHQTCCGCGQD-----LDLCPICRSFIQTR 431 (435)
Q Consensus 391 ~CpICl~~~~d--v~~~CGH~fC~~C~~~-----l~~CPiCR~~i~~~ 431 (435)
.|++|--..+. ..+||.|.||.+|+.. ...||.|+.+|..+
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRI 50 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeee
Confidence 58888766666 4469999999999954 45899999998764
No 94
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=96.54 E-value=0.008 Score=63.90 Aligned_cols=150 Identities=15% Similarity=0.235 Sum_probs=97.3
Q ss_pred cCCceeceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhccc---ccCCCCccceeeeCCCCCCC----
Q 013848 89 AGLESSNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLS---SFDEDNLIPCFGFGDASTHD---- 161 (435)
Q Consensus 89 ~Gl~~~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~---~yD~D~~ip~fGFGa~~~~~---- 161 (435)
+|-. -.++++||.|.|+.... .+ ..+..+.|.+.|..+++ .......|-+..||...+..
T Consensus 4 ~~~k-e~iv~~iDvS~SM~~~d-----------~~-~~srl~~ak~~i~~~i~~ki~~~~~D~vGlv~f~~~~~~~plt~ 70 (565)
T 1jey_B 4 SGNK-AAVVLCMDVGFTMSNSI-----------PG-IESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDGTDNPLSG 70 (565)
T ss_dssp --CC-EEEEEEEECCGGGGCCB-----------TT-BCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCT
T ss_pred CCCc-eEEEEEEECChHhcccC-----------CC-CCCcHHHHHHHHHHHHHHHhcCCCCCEEEEEEEccCCCCCcccc
Confidence 4553 26999999999995321 11 46899999999999988 36677899999999865321
Q ss_pred ----CcccccCCCCCccCCHHHHHHHHHHhcCccccc-CCCChHHHHHHHHHHHHhc--CCce--EEEEEEeCCcccccC
Q 013848 162 ----QEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLA-GPTSFAPIIEMAITIVEHS--GGQY--HVLVIIADGQVTRSV 232 (435)
Q Consensus 162 ----~~vF~~~~~~~~~~G~~gvl~~Yr~~~~~v~l~-GPT~fapII~~a~~~~~~~--~~~Y--~VLlIiTDG~i~d~~ 232 (435)
.+++-+.+-. .... .++....+ .+..+ +.|.+...|..|++..+.. ..++ -++++||||.-.-
T Consensus 71 d~~y~~i~vl~~l~--~~~~-~~l~~l~~---~l~~~~~~t~i~~al~~A~~~l~~~~~~~k~~~krIiLlTDg~~~~-- 142 (565)
T 1jey_B 71 GDQYQNITVHRHLM--LPDF-DLLEDIES---KIQPGSQQADFLDALIVSMDVIQHETIGKKFEKRHIEIFTDLSSRF-- 142 (565)
T ss_dssp TTCSTTEEEEEEEE--CCCH-HHHHHHHT---TCCCCSSCCCHHHHHHHHHHHHHHHSSSSCCSEEEEEEECCCCSCC--
T ss_pred ccCCCceEEeecCC--CCCH-HHHHHHHh---hccCCCccccHHHHHHHHHHHHHHHhhcccccccEEEEEeCCCCCC--
Confidence 1222111100 0112 33333333 23333 6799999999999988765 3334 5889999997542
Q ss_pred CcccCccchhHHHHHHHHHHhcCCCeEEE-EEecCCC
Q 013848 233 DTEHGQLSSQEKKTVEAIVKASEYPLSII-LVGVGDG 268 (435)
Q Consensus 233 d~~~~~~~~~~~~T~~aIv~AS~~PLSII-iVGVGd~ 268 (435)
+ .....+++..+.+.-+.|. +||+|..
T Consensus 143 ----~-----~~~~~~~a~~l~~~gI~i~~vig~g~~ 170 (565)
T 1jey_B 143 ----S-----KSQLDIIIHSLKKCDISLQFFLPFSLG 170 (565)
T ss_dssp ----C-----CTTHHHHHHHHHHTTEEEEEEESSCCC
T ss_pred ----C-----HHHHHHHHHHHHhcCcEEEEEeccCCC
Confidence 1 1234556677778899999 8999864
No 95
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=96.15 E-value=0.015 Score=61.30 Aligned_cols=138 Identities=11% Similarity=0.151 Sum_probs=83.0
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCCCCccceeeeCCCCCCCCcccccCCCCCc
Q 013848 94 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKF 173 (435)
Q Consensus 94 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~yD~D~~ip~fGFGa~~~~~~~vF~~~~~~~~ 173 (435)
.+++|+||.|+|+.... .+ ++| .+.++.-.++-+.. -.+..+-++.|++... ..++.++
T Consensus 369 ~~v~lvvD~SgSM~~~~---~~-~~l--------~~~~~Aa~l~~~~~--~~~d~vglv~Fs~~~~----~~~~t~~--- 427 (538)
T 1yvr_A 369 KRFLLAIDVSASMNQRV---LG-SIL--------NASVVAAAMCMLVA--RTEKDSHMVAFSDEML----PCPITVN--- 427 (538)
T ss_dssp CCEEEEEECSGGGGSBS---TT-SSC--------BHHHHHHHHHHHHH--HHCSSEEEEEESSSEE----CCSCCTT---
T ss_pred ceEEEEEECccccCCCC---CC-CcH--------HHHHHHHHHHHHHh--ccCCceEEEEECCCce----EcCCCCc---
Confidence 58999999999996421 11 111 23333222221111 2234688899986321 1233332
Q ss_pred cCCHHHHHHHHHHhcCcccccCCCChHHHHHHHHHHHHhcCCceEEEEEEeCCcccccCCcccCccchhHHHHHHHHHHh
Q 013848 174 CNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKA 253 (435)
Q Consensus 174 ~~G~~gvl~~Yr~~~~~v~l~GPT~fapII~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~T~~aIv~A 253 (435)
.++..+++.-. .+ ..|-|+++..|..+.+. ....-++|+||||..++. .. +..+.++.+.+.
T Consensus 428 -~~l~~~l~~l~----~~-~~GgT~i~~aL~~a~~~----~~~~~~iIliTDg~~~~g------~~--~~~~~l~~~~~~ 489 (538)
T 1yvr_A 428 -MLLHEVVEKMS----DI-TMGSTDCALPMLWAQKT----NTAADIFIVFTDCETNVE------DV--HPATALKQYREK 489 (538)
T ss_dssp -SCHHHHHHHHT----TC-CCSCCCTTHHHHHHHHT----TCCCSEEEEEECCCCCSS------SC--CHHHHHHHHHHH
T ss_pred -ccHHHHHHHHh----cC-CCCCCcHHHHHHHHHhc----cCCCCEEEEEcCCCCCCC------CC--CHHHHHHHHHHH
Confidence 24666665432 22 56889999999888654 233468899999987641 11 134555666666
Q ss_pred cCCCeEEEEEecCCCCC
Q 013848 254 SEYPLSIILVGVGDGPW 270 (435)
Q Consensus 254 S~~PLSIIiVGVGd~~f 270 (435)
.+.++.+++||||....
T Consensus 490 ~~~~v~l~~igig~~~~ 506 (538)
T 1yvr_A 490 MGIPAKLIVCAMTSNGF 506 (538)
T ss_dssp HTCCCEEEEEECSSSSE
T ss_pred hCCCcEEEEEEecCCCC
Confidence 67789999999998654
No 96
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.08 E-value=0.0065 Score=48.17 Aligned_cols=45 Identities=20% Similarity=0.508 Sum_probs=35.5
Q ss_pred CCCCcccccccCCcc-cee-CCCCccchhhhhcC------CCCCccccccccc
Q 013848 387 SDNHVCPICLTDPKD-MAF-GCGHQTCCGCGQDL------DLCPICRSFIQTR 431 (435)
Q Consensus 387 ~e~~~CpICl~~~~d-v~~-~CGH~fC~~C~~~l------~~CPiCR~~i~~~ 431 (435)
+....|.||.+.... ..- .|+|.|=..|+.+| ..||+||......
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred CCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 345789999998876 222 89999999999865 4799999987643
No 97
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=95.63 E-value=0.0034 Score=63.47 Aligned_cols=45 Identities=22% Similarity=0.494 Sum_probs=35.1
Q ss_pred CCCCcccccccCCcc-ce--------eCCCCccchhhhhcCC---------------CCCccccccccc
Q 013848 387 SDNHVCPICLTDPKD-MA--------FGCGHQTCCGCGQDLD---------------LCPICRSFIQTR 431 (435)
Q Consensus 387 ~e~~~CpICl~~~~d-v~--------~~CGH~fC~~C~~~l~---------------~CPiCR~~i~~~ 431 (435)
+....|.||++...+ .. ..|||.|-..|+.+|. .||.||++|...
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 456799999987665 21 2699999999997652 599999998754
No 98
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=95.34 E-value=0.093 Score=55.45 Aligned_cols=139 Identities=15% Similarity=0.158 Sum_probs=84.2
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCCCCccceeeeCCCCCCCCcccccCCCCCc
Q 013848 94 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKF 173 (435)
Q Consensus 94 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~yD~D~~ip~fGFGa~~~~~~~vF~~~~~~~~ 173 (435)
.+++|+||.|+|+.+.+ ... ....+..+.| ..++-++..- . ..+-++.|++.... ..+.++
T Consensus 363 ~~~lv~vDvSgSM~~~~-------~~~--~~k~~~~e~A-a~la~~~~r~-~-d~v~lv~Fs~~~~~----~~~~~~--- 423 (535)
T 2nvo_A 363 TRHLLALDVSGSMTCGD-------VAG--VPGLTPNMAA-AAMSLIALRT-E-PDALTMGFAEQFRP----LGITPR--- 423 (535)
T ss_dssp SEEEEEECCSGGGGSCC-------GGG--CTTCCHHHHH-HHHHHHHHHH-S-SEEEEEEEBSSEEE----CCCCTT---
T ss_pred ceEEEEEECCccccCCC-------CCC--CCcccHHHHH-HHHHHHHcCc-C-CceEEEEECCcceE----cCCCcc---
Confidence 57899999999996411 000 1124544444 3444333332 2 26888999874211 122222
Q ss_pred cCCHHHHHHHHHHhcCcccccCCCChHHHHHHHHHHHHhcCCceEEEEEEeCCcccccCCcccCccchhHHHHHHHHHHh
Q 013848 174 CNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSGGQYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKA 253 (435)
Q Consensus 174 ~~G~~gvl~~Yr~~~~~v~l~GPT~fapII~~a~~~~~~~~~~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~T~~aIv~A 253 (435)
.++.++++. +... ..|.|+++..|+.+.+. ....-++||||||+... |..++ .+.++...+.
T Consensus 424 -~~l~~~l~~---l~~~--~~ggTdi~~~l~~a~~~----~~~~~~vIliTD~~~~~------g~~~~--~~al~~~r~~ 485 (535)
T 2nvo_A 424 -DTLESAMQK---AQSV--SFGGTDCAQPILWAAQE----RLDVDTFVVYTDNETWA------GQVHP--TVALDQYAQK 485 (535)
T ss_dssp -CCHHHHHHH---TCCS--SBCCCCTTHHHHHHHHT----TCCCSEEEEEESSCCCC------CSSCH--HHHHHHHHHH
T ss_pred -hhHHHHHHH---HhhC--CCCCccHHHHHHHHHHh----cCCCCEEEEEeCCCccC------CCCCH--HHHHHHHHHh
Confidence 456555553 3222 36889999888776432 33467899999998764 22223 3456666666
Q ss_pred cCCCeEEEEEecCCCC
Q 013848 254 SEYPLSIILVGVGDGP 269 (435)
Q Consensus 254 S~~PLSIIiVGVGd~~ 269 (435)
.+.++-+++||||...
T Consensus 486 ~~~~~klv~i~l~~~~ 501 (535)
T 2nvo_A 486 MGRAPKLIVVGLTATE 501 (535)
T ss_dssp HSCCCEEEEEETTCSC
T ss_pred hCCCCeEEEEeccCCC
Confidence 6789999999999864
No 99
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=94.60 E-value=0.015 Score=44.04 Aligned_cols=44 Identities=27% Similarity=0.499 Sum_probs=32.2
Q ss_pred CCCCcccccccCCcc-ceeCCC--C---ccchhhhhcC------CCCCcccccccc
Q 013848 387 SDNHVCPICLTDPKD-MAFGCG--H---QTCCGCGQDL------DLCPICRSFIQT 430 (435)
Q Consensus 387 ~e~~~CpICl~~~~d-v~~~CG--H---~fC~~C~~~l------~~CPiCR~~i~~ 430 (435)
++...|.||++...+ .+.||. | .|=..|+.+| ..||+||..+..
T Consensus 4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 455789999987555 445865 3 5666899876 479999998764
No 100
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=94.24 E-value=0.03 Score=46.43 Aligned_cols=52 Identities=23% Similarity=0.489 Sum_probs=41.1
Q ss_pred CCCCCCCCcccccccCCccceeCCCCccchhhhhcCC----CCCcccccccccccc
Q 013848 383 ASSTSDNHVCPICLTDPKDMAFGCGHQTCCGCGQDLD----LCPICRSFIQTRIKL 434 (435)
Q Consensus 383 ~~~l~e~~~CpICl~~~~dv~~~CGH~fC~~C~~~l~----~CPiCR~~i~~~irl 434 (435)
...+-.-.-|..|+-..+..+--.-|-+|..|+..+. .||+|..++.++|++
T Consensus 22 d~s~~G~~nCKsCWf~~k~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~~ 77 (99)
T 2ko5_A 22 DATHLGPQFCKSCWFENKGLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLRP 77 (99)
T ss_dssp SCCCSCCCCCCSSCSCCSSEEECSSCEEEHHHHHHTCSSSSEETTTTEECCCCSCT
T ss_pred CccccCcccChhhccccCCeeeecchhhHHHHHHHHHhhccCCcccCCcCCcceec
Confidence 3445566789999988776555556889999998763 799999999998875
No 101
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}
Probab=90.81 E-value=0.86 Score=42.80 Aligned_cols=109 Identities=13% Similarity=0.160 Sum_probs=63.2
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccCCCCccceeeeCCCCCCCCcccccCCCCCc
Q 013848 94 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKF 173 (435)
Q Consensus 94 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~yD~D~~ip~fGFGa~~~~~~~vF~~~~~~~~ 173 (435)
+.|.+.+|+|.|+++. .+.-+..+..|.+-|+.+..+-+|-+-+|-++. ..++++|..
T Consensus 4 vDl~fl~D~S~SM~~d----------------i~~lk~~~~~l~~~l~~~~~~~r~Gfg~f~Dk~--~~~~l~lT~---- 61 (212)
T 2iue_A 4 VDLYFLMGLSGSAQGH----------------LSNVQTLGSDLLKALNEISRSGRIGFGSIVNMT--FQHILKLTA---- 61 (212)
T ss_dssp EEEEEEEECCGGGTTT----------------HHHHHHHHHHHHHHHHHHCSCEEEEEEEESSSC--EEEEEEEES----
T ss_pred eEEEEEEeCCCcchhH----------------HHHHHHHHHHHHHHHHhhCcCceEEEEEEEcCc--ceecCCcCC----
Confidence 5799999999999731 355666777777777777666555444454551 123344422
Q ss_pred cCCHHHHHHHHHHhcCcccccC----CCC-hHHHHHHHH--HHHHhcCCceEEEEEEeCCccccc
Q 013848 174 CNGFEEVLRRYRELVPHLRLAG----PTS-FAPIIEMAI--TIVEHSGGQYHVLVIIADGQVTRS 231 (435)
Q Consensus 174 ~~G~~gvl~~Yr~~~~~v~l~G----PT~-fapII~~a~--~~~~~~~~~Y~VLlIiTDG~i~d~ 231 (435)
.++.. .+.+.....+| |-. |.-+++.+. +.....+ .-++||++||+..+..
T Consensus 62 --d~~~F----~~~v~~~~vsg~~D~PE~g~dal~qa~~c~~~i~Wr~-a~rllvl~TDa~~H~~ 119 (212)
T 2iue_A 62 --DSSQF----QRELRKQLVSGKLATPKGQLDAVVQVAICLGEIGWRN-GTRFLVLVTDNDFHLA 119 (212)
T ss_dssp --CHHHH----HHHHHTCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCS-SEEEEEEECSSCBCCT
T ss_pred --CHHHH----HHHHhhccccCCCCCCchHHHHHHHHHHhhhhcccCC-ccEEEEEECcCCcccc
Confidence 23333 33344455555 433 333444332 1222344 5699999999988753
No 102
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=90.70 E-value=0.092 Score=42.68 Aligned_cols=30 Identities=23% Similarity=0.637 Sum_probs=24.3
Q ss_pred CCCcccccccC-Ccc-ce--eCCCCccchhhhhc
Q 013848 388 DNHVCPICLTD-PKD-MA--FGCGHQTCCGCGQD 417 (435)
Q Consensus 388 e~~~CpICl~~-~~d-v~--~~CGH~fC~~C~~~ 417 (435)
++..|.||.+. +.+ +. +.|+|.||..|+..
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~ 35 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 35 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHH
Confidence 45799999975 455 44 59999999999985
No 103
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Probab=88.84 E-value=2.1 Score=48.13 Aligned_cols=124 Identities=16% Similarity=0.195 Sum_probs=71.0
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhccccc--CCCCccceeeeCCCCCCCC--c------
Q 013848 94 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSF--DEDNLIPCFGFGDASTHDQ--E------ 163 (435)
Q Consensus 94 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~y--D~D~~ip~fGFGa~~~~~~--~------ 163 (435)
+.++++||.|+|+... .+. .....+++-.++-.+|..+ ..+.+|-+..|+....... .
T Consensus 225 ~DIVfVLD~SGSM~~~--------~~~----~~~Rl~~~K~a~~~~ld~L~~~~~drVgLV~Fs~~a~~~~~~~v~~~~~ 292 (893)
T 2ww8_A 225 LDVVILLDNSNSMSNI--------RNK----NARRAERAGEATRSLIDKITSDSENRVALVTYASTIFDGTEFTVEKGVA 292 (893)
T ss_dssp EEEEEEEECCGGGCTT--------HHH----HCCHHHHHHHHHHHHHHHHHTSTTCEEEEEEESSSBCBSCEEEEECCEE
T ss_pred ccEEEEEeCCCCCCCc--------Ccc----chhHHHHHHHHHHHHHHHhhcCCCcEEEEEEecCccccccccccccccc
Confidence 5699999999999631 000 0113444333444444333 3467899999997532100 0
Q ss_pred ------------------ccccCCCCCcc-----CCHHHHHHHHHHhcCc----------ccccCCCChHHHHHHHHHHH
Q 013848 164 ------------------VFSFYPDEKFC-----NGFEEVLRRYRELVPH----------LRLAGPTSFAPIIEMAITIV 210 (435)
Q Consensus 164 ------------------vF~~~~~~~~~-----~G~~gvl~~Yr~~~~~----------v~l~GPT~fapII~~a~~~~ 210 (435)
.|... ...+| ...+.+ ++-+..++. +...|-|+...-|..|+++.
T Consensus 293 ~~~g~~~n~~~~w~~~~t~~t~~-~~~~~~lpLT~d~~~i-~~lk~~I~~~~~~~~G~~~l~~~GGT~i~~AL~~A~~lL 370 (893)
T 2ww8_A 293 DKNGKRLNDSLFWNYDQTSFTTN-TKDYSYLKLTNDKNDI-VELKNKVPTEAEDHDGNRLMYQFGATFTQKALMKADEIL 370 (893)
T ss_dssp CTTCCEECCCTTSCTTCCEEEEE-CCBCCEEEEECCHHHH-HHHHHHSCSCCCCSCTTSGGGGGCSCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccc-ccccccccccCCHHHH-HHHHHHHhhhccccccccccccCCCChHHHHHHHHHHHH
Confidence 01000 01111 233333 333455654 34468899999999999988
Q ss_pred Hhc--CCceEEEEEEeCCccccc
Q 013848 211 EHS--GGQYHVLVIIADGQVTRS 231 (435)
Q Consensus 211 ~~~--~~~Y~VLlIiTDG~i~d~ 231 (435)
+.. ...=-++|+||||+-+..
T Consensus 371 ~~~~~~~~~kvIILLTDG~pt~~ 393 (893)
T 2ww8_A 371 TQQARQNSQKVIFHITDGVPTMS 393 (893)
T ss_dssp HHHSCSSSEEEEEEEESSCCSEE
T ss_pred HhhcccCCCeEEEEEcCCCCCcc
Confidence 642 233468899999988753
No 104
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=71.71 E-value=4.6 Score=44.07 Aligned_cols=50 Identities=20% Similarity=0.400 Sum_probs=30.9
Q ss_pred HHHHHHhcCcccccC----CC-ChHHHHHHHH--HHHHhcCCceEEEEEEeCCcccc
Q 013848 181 LRRYRELVPHLRLAG----PT-SFAPIIEMAI--TIVEHSGGQYHVLVIIADGQVTR 230 (435)
Q Consensus 181 l~~Yr~~~~~v~l~G----PT-~fapII~~a~--~~~~~~~~~Y~VLlIiTDG~i~d 230 (435)
++.+++.+.++..+| |- -|.-|+..|. +......+..++||++||...+-
T Consensus 200 ~~~f~~~v~~~~isgn~D~PE~g~dAl~qa~~c~~~igWr~~a~rllv~~TDa~~H~ 256 (690)
T 3fcs_B 200 VTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTTDAKTHI 256 (690)
T ss_dssp HHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCSSSEEEEEEEESSCBCC
T ss_pred HHHHHHHhhceeccCCCCCCchHHHHHHHHhhcccccCCCCCceEEEEEECCCcccc
Confidence 345566677777766 33 3544554442 33344455789999999987663
No 105
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=68.85 E-value=2.3 Score=40.43 Aligned_cols=42 Identities=21% Similarity=0.494 Sum_probs=32.2
Q ss_pred CCcccccccCCcccee--CCCCccchhhhhcC------CCCCcccccccc
Q 013848 389 NHVCPICLTDPKDMAF--GCGHQTCCGCGQDL------DLCPICRSFIQT 430 (435)
Q Consensus 389 ~~~CpICl~~~~dv~~--~CGH~fC~~C~~~l------~~CPiCR~~i~~ 430 (435)
-..|.+|.+....-.. .|+|.|-..|+..+ ..||.|+.....
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 4689999987665332 59999999999764 289999987653
No 106
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=65.95 E-value=4.2 Score=32.87 Aligned_cols=29 Identities=31% Similarity=0.804 Sum_probs=24.4
Q ss_pred CCCcccccccCCcccee-CC----CCccchhhhh
Q 013848 388 DNHVCPICLTDPKDMAF-GC----GHQTCCGCGQ 416 (435)
Q Consensus 388 e~~~CpICl~~~~dv~~-~C----GH~fC~~C~~ 416 (435)
..+.|-+|.+...+..| .| +|.||..|.+
T Consensus 14 a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr 47 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSR 47 (93)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHH
T ss_pred CeeEeecchhhhccCceeeCCCccCCeeeccccH
Confidence 45799999999999665 66 5999999986
No 107
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=65.10 E-value=3.7 Score=39.34 Aligned_cols=42 Identities=21% Similarity=0.343 Sum_probs=28.1
Q ss_pred ceEEEEEEeCCcccccCCcccCccchhHHHHHHHHHHhcCCCeEEEEEecCCCC
Q 013848 216 QYHVLVIIADGQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIILVGVGDGP 269 (435)
Q Consensus 216 ~Y~VLlIiTDG~i~d~~d~~~~~~~~~~~~T~~aIv~AS~~PLSIIiVGVGd~~ 269 (435)
.--++++||||.-+- |. .| +++...|.+.-+-|..||||+.+
T Consensus 9 ~~k~iillTDG~~~~------g~-~p-----~~aa~~a~~~gi~v~tIGig~~~ 50 (242)
T 3rag_A 9 TIRQILVITDGCSNI------GP-DP-----VEAARRAHRHGIVVNVIGIVGRG 50 (242)
T ss_dssp CEEEEEEEESSCCCS------SS-CH-----HHHHHHHHHTTCEEEEEEECCSS
T ss_pred CccEEEEEccCCCCC------CC-CH-----HHHHHHHHHCCCEEEEEEecCCc
Confidence 346889999998652 21 22 23334456677999999998753
No 108
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=60.44 E-value=12 Score=35.80 Aligned_cols=90 Identities=16% Similarity=0.206 Sum_probs=57.2
Q ss_pred eceEEEEecCCCCCCCCCCCCCCCCcccCCCCCCHHHHHHHHHhhcccccC---CCCccceeeeCCCCCCCCccc-ccCC
Q 013848 94 SNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFD---EDNLIPCFGFGDASTHDQEVF-SFYP 169 (435)
Q Consensus 94 ~nlivaIDFT~SN~~~g~~~~~~~SLH~i~~~~N~Yq~AI~~Ig~vl~~yD---~D~~ip~fGFGa~~~~~~~vF-~~~~ 169 (435)
..+++.||-|+|+. +..+.+-..+-.++..++ ....|-++.|+........+. .|..
T Consensus 135 ~~vvfLVDtSgSM~-------------------~kl~~vk~al~~Ll~sl~~~~~~~~VavV~F~~~~~~~~~ll~pfT~ 195 (242)
T 3rag_A 135 LHLVVCLDTSASMR-------------------DKIPTVREAVRDLALSLKVRSGPLAVSVIAFPGKGEEATRLVQPFSS 195 (242)
T ss_dssp EEEEEEEECSGGGT-------------------TTHHHHHHHHHHHHHHHTTSSSCEEEEEEEESCSTTCSCEEEEEEES
T ss_pred CCEEEEEECcccHH-------------------HHHHHHHHHHHHHHHHHhccCCCcEEEEEEECCCCccceeecCCCCC
Confidence 57999999999994 114444444555555443 567999999998642221121 3322
Q ss_pred CCCccCCHHHHHHHHHHhcCcccccCCCChHHHHHHHHHHHHhc
Q 013848 170 DEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHS 213 (435)
Q Consensus 170 ~~~~~~G~~gvl~~Yr~~~~~v~l~GPT~fapII~~a~~~~~~~ 213 (435)
. . .+.. .++.+...|-|..++-|+.|.++.++.
T Consensus 196 ~---~-~~~~-------~l~~L~agG~Tplg~AL~~A~~~~~~~ 228 (242)
T 3rag_A 196 E---V-NVAA-------LEAELVARGGTPTGPAIDHAADLLLSH 228 (242)
T ss_dssp S---C-CHHH-------HHHHCCCCSCCCHHHHHHHHHHHHHHH
T ss_pred h---H-HHHH-------HHhhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 1 1 2222 334466789999999999999987643
No 109
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=59.66 E-value=5.5 Score=30.06 Aligned_cols=35 Identities=31% Similarity=0.773 Sum_probs=27.6
Q ss_pred CcccccccCCccc-ee---CCCCccchhhhh----cCCCCCcc
Q 013848 390 HVCPICLTDPKDM-AF---GCGHQTCCGCGQ----DLDLCPIC 424 (435)
Q Consensus 390 ~~CpICl~~~~dv-~~---~CGH~fC~~C~~----~l~~CPiC 424 (435)
..|-.|...+.+. ++ .|++.||.+|-. .+..||.|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 3699999888763 34 788999999974 56789998
No 110
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=44.58 E-value=4.3 Score=36.17 Aligned_cols=39 Identities=23% Similarity=0.497 Sum_probs=28.8
Q ss_pred CCcccccccCCcc----ce--eCCCCccchhhhh-----cCCCCCccccc
Q 013848 389 NHVCPICLTDPKD----MA--FGCGHQTCCGCGQ-----DLDLCPICRSF 427 (435)
Q Consensus 389 ~~~CpICl~~~~d----v~--~~CGH~fC~~C~~-----~l~~CPiCR~~ 427 (435)
+..|.+|...+.- -. ..|.|.+|..|.. ..+.|-+|+..
T Consensus 68 ~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 68 ETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEECCSSSSSCEEHHHHHH
T ss_pred CccchhhcCccccccCCCCcCCCCCchhhcccccccCCCCcEeeHHHHHH
Confidence 4689999986432 22 3899999999984 34678888764
No 111
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=42.16 E-value=14 Score=37.43 Aligned_cols=41 Identities=29% Similarity=0.492 Sum_probs=30.7
Q ss_pred CCcccccccCCcc-cee-CCCCccchhhh--------hcCCCCCccccccc
Q 013848 389 NHVCPICLTDPKD-MAF-GCGHQTCCGCG--------QDLDLCPICRSFIQ 429 (435)
Q Consensus 389 ~~~CpICl~~~~d-v~~-~CGH~fC~~C~--------~~l~~CPiCR~~i~ 429 (435)
.+.||+-....+. +-. .|.|.-|.+-. ...+.||+|.+.+.
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred eecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 4799999988877 333 89999777543 24579999988763
No 112
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=40.82 E-value=32 Score=27.07 Aligned_cols=29 Identities=24% Similarity=0.487 Sum_probs=22.2
Q ss_pred CCCcccccccCCccce-----eCCCCccchhhhh
Q 013848 388 DNHVCPICLTDPKDMA-----FGCGHQTCCGCGQ 416 (435)
Q Consensus 388 e~~~CpICl~~~~dv~-----~~CGH~fC~~C~~ 416 (435)
+...|.+|...|.-.. -.||+.||..|..
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~ 53 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSR 53 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGC
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhC
Confidence 4468999988776521 2899999999975
No 113
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=38.85 E-value=24 Score=32.46 Aligned_cols=29 Identities=28% Similarity=0.587 Sum_probs=21.9
Q ss_pred CCCcccccccCCccc---e--eCCCCccchhhhh
Q 013848 388 DNHVCPICLTDPKDM---A--FGCGHQTCCGCGQ 416 (435)
Q Consensus 388 e~~~CpICl~~~~dv---~--~~CGH~fC~~C~~ 416 (435)
+...|.+|...|.-. . -.||+.||..|..
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~ 193 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTA 193 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSC
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhC
Confidence 346999998877542 1 2899999999975
No 114
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=38.02 E-value=18 Score=36.47 Aligned_cols=42 Identities=19% Similarity=0.450 Sum_probs=31.2
Q ss_pred CCCcccccccCCcc-cee-CCCCccchhhh--------hcCCCCCccccccc
Q 013848 388 DNHVCPICLTDPKD-MAF-GCGHQTCCGCG--------QDLDLCPICRSFIQ 429 (435)
Q Consensus 388 e~~~CpICl~~~~d-v~~-~CGH~fC~~C~--------~~l~~CPiCR~~i~ 429 (435)
-.+.||+-....+. +-. .|.|.-|.+-. ...+.||+|.+.+.
T Consensus 214 vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 214 VSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp EESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred EeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 34789999888877 333 89999777544 24579999998764
No 115
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=35.72 E-value=29 Score=32.29 Aligned_cols=42 Identities=21% Similarity=0.551 Sum_probs=29.0
Q ss_pred CCcccccccCCccce-----eCCCCccchhhhhc------------CCCCCcccccccc
Q 013848 389 NHVCPICLTDPKDMA-----FGCGHQTCCGCGQD------------LDLCPICRSFIQT 430 (435)
Q Consensus 389 ~~~CpICl~~~~dv~-----~~CGH~fC~~C~~~------------l~~CPiCR~~i~~ 430 (435)
...|.+|...|.-.. -.||+.||..|... .+.|-.|-..+..
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~~~p~~~~~~~~RVC~~C~~~l~~ 222 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQLNR 222 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEEEEGGGTEEEEEEECHHHHHHHCC
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCcccCCCCCCCCCCEeCHHHHHHhhh
Confidence 358999988776421 28999999999752 1367777655543
No 116
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=35.23 E-value=5.2 Score=34.82 Aligned_cols=39 Identities=26% Similarity=0.589 Sum_probs=28.6
Q ss_pred CCcccccccCCc---c-ce--eCCCCccchhhhhcC--------CCCCccccc
Q 013848 389 NHVCPICLTDPK---D-MA--FGCGHQTCCGCGQDL--------DLCPICRSF 427 (435)
Q Consensus 389 ~~~CpICl~~~~---d-v~--~~CGH~fC~~C~~~l--------~~CPiCR~~ 427 (435)
+..|.+|...+. + -. ..|.|.+|..|.... +.|-+|+..
T Consensus 55 ~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 55 VNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQ 107 (134)
T ss_dssp SSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHH
T ss_pred CccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHHH
Confidence 458999998763 1 12 389999999998633 478888764
No 117
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=34.69 E-value=23 Score=28.37 Aligned_cols=30 Identities=23% Similarity=0.460 Sum_probs=22.6
Q ss_pred CCCCcccccccCCccce-----eCCCCccchhhhh
Q 013848 387 SDNHVCPICLTDPKDMA-----FGCGHQTCCGCGQ 416 (435)
Q Consensus 387 ~e~~~CpICl~~~~dv~-----~~CGH~fC~~C~~ 416 (435)
.+...|.+|...|.-.. -.||+.||..|..
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 41 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLS 41 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSC
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcC
Confidence 34568999998776421 2899999999975
No 118
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=34.20 E-value=5.8 Score=33.02 Aligned_cols=39 Identities=33% Similarity=0.780 Sum_probs=22.5
Q ss_pred CCCcccccccCCccceeCCCCccchhhhhcCC---CCCccccccc
Q 013848 388 DNHVCPICLTDPKDMAFGCGHQTCCGCGQDLD---LCPICRSFIQ 429 (435)
Q Consensus 388 e~~~CpICl~~~~dv~~~CGH~fC~~C~~~l~---~CPiCR~~i~ 429 (435)
.+..||+|...... .=++..|..|..... .||-|.++++
T Consensus 31 M~~~CP~Cq~eL~~---~g~~~hC~~C~~~f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 31 MELHCPQCQHVLDQ---DNGHARCRSCGEFIEMKALCPDCHQPLQ 72 (101)
T ss_dssp CCCBCSSSCSBEEE---ETTEEEETTTCCEEEEEEECTTTCSBCE
T ss_pred ccccCccCCCccee---cCCEEECccccchhhccccCcchhhHHH
Confidence 44799999865432 113334666655432 5777766654
No 119
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=33.71 E-value=26 Score=36.53 Aligned_cols=49 Identities=20% Similarity=0.396 Sum_probs=28.0
Q ss_pred HHHHHhcCcccccC----CCC-hHHHHHHHH--HHHHhcCCceEEEEEEeCCcccc
Q 013848 182 RRYRELVPHLRLAG----PTS-FAPIIEMAI--TIVEHSGGQYHVLVIIADGQVTR 230 (435)
Q Consensus 182 ~~Yr~~~~~v~l~G----PT~-fapII~~a~--~~~~~~~~~Y~VLlIiTDG~i~d 230 (435)
+.+++.+.++..+| |-. |.-|+..|. +........-++||++||...+-
T Consensus 201 ~~F~~~V~~~~iSGn~D~PEgg~dAl~qaavC~~~igWR~~a~rllV~~TDa~~H~ 256 (472)
T 3t3p_B 201 TRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEKIGWRNDASHLLVFTTDAKTHI 256 (472)
T ss_dssp HHHHHHHHHCCCCCCSSSSBCHHHHHHHHHHCHHHHTCCSSSEEEEEEEESSCBCC
T ss_pred HHHHHHHhhccccCCCCCCchHHHHHHHHhcchhhcCCCCCceEEEEEECCCCcCc
Confidence 34455555565555 433 444444442 23333444579999999987663
No 120
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=33.09 E-value=66 Score=25.29 Aligned_cols=28 Identities=25% Similarity=0.482 Sum_probs=19.2
Q ss_pred CCCCCcccccccCCcccee--CCCCccchh
Q 013848 386 TSDNHVCPICLTDPKDMAF--GCGHQTCCG 413 (435)
Q Consensus 386 l~e~~~CpICl~~~~dv~~--~CGH~fC~~ 413 (435)
......|..|.....-+.| .||..||..
T Consensus 22 k~~~~RC~~C~kkvgL~~f~CrCg~~FCs~ 51 (74)
T 1wfp_A 22 KSTATRCLSCNKKVGVTGFKCRCGSTFCGT 51 (74)
T ss_dssp TCCCCBCSSSCCBCTTTCEECTTSCEECTT
T ss_pred cccCccchhhcCcccccceEeccCCEeccc
Confidence 3445689999865444444 788889874
No 121
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=32.58 E-value=27 Score=26.70 Aligned_cols=27 Identities=22% Similarity=0.448 Sum_probs=21.0
Q ss_pred CcccccccCCccce-----eCCCCccchhhhh
Q 013848 390 HVCPICLTDPKDMA-----FGCGHQTCCGCGQ 416 (435)
Q Consensus 390 ~~CpICl~~~~dv~-----~~CGH~fC~~C~~ 416 (435)
..|.+|...|.-.. -.||..||..|..
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 48999998776422 2899999999975
No 122
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=32.57 E-value=31 Score=28.21 Aligned_cols=41 Identities=27% Similarity=0.689 Sum_probs=29.5
Q ss_pred CCcccccccCC---cc-cee----CCCCccchhhhhc-----CCCCCccccccc
Q 013848 389 NHVCPICLTDP---KD-MAF----GCGHQTCCGCGQD-----LDLCPICRSFIQ 429 (435)
Q Consensus 389 ~~~CpICl~~~---~d-v~~----~CGH~fC~~C~~~-----l~~CPiCR~~i~ 429 (435)
...|.||-+.. .+ -+| .|+--+|+.|.+- -..||.|.....
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 36999998752 22 122 6788899999862 358999998775
No 123
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=32.17 E-value=6.9 Score=29.75 Aligned_cols=42 Identities=29% Similarity=0.642 Sum_probs=25.3
Q ss_pred CCCCCcccccccC-Cccce----eCCCCccchhhhhcC--------CCCCccccc
Q 013848 386 TSDNHVCPICLTD-PKDMA----FGCGHQTCCGCGQDL--------DLCPICRSF 427 (435)
Q Consensus 386 l~e~~~CpICl~~-~~dv~----~~CGH~fC~~C~~~l--------~~CPiCR~~ 427 (435)
..+..+|.||+.. |.|-. .-|.-.||..|.-.+ +.|-+||+.
T Consensus 6 ~~d~~~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~v~lr~~k~~WvC~lC~k~ 60 (62)
T 2a20_A 6 KGDAPTCGICHKTKFADGCGHNCSYCQTKFCARCGGRVSLRSNKVMWVCNLCRKQ 60 (62)
T ss_dssp SSCCCCCSSSSCSCCCSSCCEEBTTTCCEECTTSEEEEESSTTCEEEEEHHHHHH
T ss_pred cCCcchhhhhccceeccCCCccccccCCeeecccCCEeeecCCeEEEEehhhhhc
Confidence 3466799999863 44411 144455677777533 368888753
No 124
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=30.64 E-value=28 Score=26.52 Aligned_cols=45 Identities=22% Similarity=0.409 Sum_probs=30.0
Q ss_pred CCCCcccccccCCcc--cee--CCCCccchhhhhc--------CCCCCccccccccc
Q 013848 387 SDNHVCPICLTDPKD--MAF--GCGHQTCCGCGQD--------LDLCPICRSFIQTR 431 (435)
Q Consensus 387 ~e~~~CpICl~~~~d--v~~--~CGH~fC~~C~~~--------l~~CPiCR~~i~~~ 431 (435)
.+...|.||...... ++. .|...|-..|+.. -+.||.|+..+.++
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k~ 72 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKKD 72 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCSC
T ss_pred CCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhhc
Confidence 344679999876433 444 6776666788741 25799998876543
No 125
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=29.06 E-value=80 Score=24.83 Aligned_cols=25 Identities=24% Similarity=0.530 Sum_probs=17.8
Q ss_pred CCcccccccCCcccee--CCCCccchh
Q 013848 389 NHVCPICLTDPKDMAF--GCGHQTCCG 413 (435)
Q Consensus 389 ~~~CpICl~~~~dv~~--~CGH~fC~~ 413 (435)
...|..|.....-+.+ .||..||..
T Consensus 25 ~nRC~~CrKkvgL~gf~CrCg~~FCs~ 51 (74)
T 1wfl_A 25 KNRCFMCRKKVGLTGFDCRCGNLFCGL 51 (74)
T ss_dssp TTBCSSSCCBCGGGCEECTTSCEECSS
T ss_pred CCcChhhCCcccccCeecCCCCEechh
Confidence 4589999876444445 688889873
No 126
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=28.85 E-value=33 Score=26.84 Aligned_cols=29 Identities=24% Similarity=0.560 Sum_probs=22.0
Q ss_pred CCCcccccccCCccce-----eCCCCccchhhhh
Q 013848 388 DNHVCPICLTDPKDMA-----FGCGHQTCCGCGQ 416 (435)
Q Consensus 388 e~~~CpICl~~~~dv~-----~~CGH~fC~~C~~ 416 (435)
+...|.+|...|.-.. -.||..||..|..
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~ 51 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSS 51 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGC
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhC
Confidence 3457999988776422 2899999999986
No 127
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=28.79 E-value=46 Score=24.52 Aligned_cols=40 Identities=20% Similarity=0.456 Sum_probs=26.5
Q ss_pred CCCCcccccccCCcccee--CCCCccchhhhhc--------CCCCCccccc
Q 013848 387 SDNHVCPICLTDPKDMAF--GCGHQTCCGCGQD--------LDLCPICRSF 427 (435)
Q Consensus 387 ~e~~~CpICl~~~~dv~~--~CGH~fC~~C~~~--------l~~CPiCR~~ 427 (435)
.++..|.||.+. .++++ .|...|-..|+.. -+.||.|+..
T Consensus 7 ~~~~~C~vC~~~-g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 7 HHMEFCRVCKDG-GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SSCSSCTTTCCC-SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCCcCCCCCCC-CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 456789999863 23444 6776666677752 2479999764
No 128
>3m0m_A L-rhamnose isomerase; beta/alpha barrel, HOMO-tetramer, metal-binding protein, TIM isomerase; HET: AOS; 1.45A {Pseudomonas stutzeri} PDB: 3m0l_A* 3m0h_A* 3m0v_A* 3m0x_A* 3m0y_A* 3itx_A 2hcv_A* 2i57_A* 2i56_A 3ity_A 3iud_A 3iuh_A 3iui_A 3itv_A* 3itt_A* 3itl_A* 3ito_A* 4gji_A* 4gjj_A*
Probab=28.56 E-value=65 Score=33.15 Aligned_cols=112 Identities=21% Similarity=0.219 Sum_probs=60.3
Q ss_pred CccceeeeCCCCCCCCcccccCCCCCccCCHHHHHHHHHHh------cCcccccCCCChHHHHHHHHHHHHhcCCceEEE
Q 013848 147 NLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYREL------VPHLRLAGPTSFAPIIEMAITIVEHSGGQYHVL 220 (435)
Q Consensus 147 ~~ip~fGFGa~~~~~~~vF~~~~~~~~~~G~~gvl~~Yr~~------~~~v~l~GPT~fapII~~a~~~~~~~~~~Y~VL 220 (435)
-.+|+||||..-+. +..|+ +|. .-..+++.++.-.++ .+.|.|..|-.. .-++...+.+++.+-. +.
T Consensus 52 is~~~W~f~~~g~~-~~~~~-~~g--~~r~~~e~~~d~~~v~~l~~~~~~v~lH~p~d~-~d~~~lk~~l~e~GL~--l~ 124 (438)
T 3m0m_A 52 VAVPSWGVGTGGTR-FARFP-GTG--EPRGIFDKLDDCAVIQQLTRATPNVSLHIPWDK-ADPKELKARGDALGLG--FD 124 (438)
T ss_dssp CBEEGGGSSBCBCS-SCBCC-CSS--CCCSHHHHHHHHHHHHHHHSCCCEEEEETTTTC-CCHHHHHHHHHHHTCE--EE
T ss_pred eeeceecccCCCCc-cccCC-CCC--CCCCHHHHHHHHHHHhcccCCCcceeecCCccH-HHHHHHHHHHHHcCCc--eE
Confidence 46999999975443 33344 222 224577776665443 466788887654 4445556666776633 32
Q ss_pred EEEe----C--CcccccCCcccCccc-hhH-------HHHHHHHHHhcCCCeEEEEEecCCC
Q 013848 221 VIIA----D--GQVTRSVDTEHGQLS-SQE-------KKTVEAIVKASEYPLSIILVGVGDG 268 (435)
Q Consensus 221 lIiT----D--G~i~d~~d~~~~~~~-~~~-------~~T~~aIv~AS~~PLSIIiVGVGd~ 268 (435)
.|-+ + |+... ...|.|+ +|. +..+++|..|..+....+.+-.|++
T Consensus 125 ~i~~~~f~hp~~~~~~---Y~~GnLtspD~~vR~~Ai~~lk~~Id~A~~LGa~~lv~w~GdG 183 (438)
T 3m0m_A 125 AMNSNTFSDAPGQAHS---YKYGSLSHTNAATRAQAVEHNLECIEIGKAIGSKALTVWIGDG 183 (438)
T ss_dssp EEECCCSSCCTTCSSC---CTTCSTTCSSHHHHHHHHHHHHHHHHHHHHHTCCEEEECCCCE
T ss_pred EeecccccCchhcccc---cccCCCCCcCHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCCc
Confidence 2222 2 11111 0112222 232 3566677777777777776666643
No 129
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=28.33 E-value=97 Score=23.31 Aligned_cols=39 Identities=18% Similarity=0.304 Sum_probs=27.4
Q ss_pred CCCcccccccCCcccee--CCCCccchhhhhc--------CCCCCccccc
Q 013848 388 DNHVCPICLTDPKDMAF--GCGHQTCCGCGQD--------LDLCPICRSF 427 (435)
Q Consensus 388 e~~~CpICl~~~~dv~~--~CGH~fC~~C~~~--------l~~CPiCR~~ 427 (435)
....|.||.+. .++++ .|...|-..|+.. -+.|+.|+..
T Consensus 11 ~~~~C~vC~~~-~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 11 PGARCGVCGDG-TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TTCCCTTTSCC-TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCcCCCCCC-CeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 34579999864 33555 7888888888842 2589999764
No 130
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=27.77 E-value=54 Score=26.11 Aligned_cols=45 Identities=22% Similarity=0.451 Sum_probs=29.3
Q ss_pred CCCCCCcccccccCC---cc-cee--CCCCccchhhhhc------CCCCCccccccc
Q 013848 385 STSDNHVCPICLTDP---KD-MAF--GCGHQTCCGCGQD------LDLCPICRSFIQ 429 (435)
Q Consensus 385 ~l~e~~~CpICl~~~---~d-v~~--~CGH~fC~~C~~~------l~~CPiCR~~i~ 429 (435)
..+++..|.||.... .+ +++ .|.-.|-..|+.. -+.||.|+....
T Consensus 21 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 21 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRA 77 (88)
T ss_dssp CCCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTT
T ss_pred cCCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccc
Confidence 345678999999764 22 454 6765565677642 358999976543
No 131
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=27.70 E-value=13 Score=37.24 Aligned_cols=41 Identities=22% Similarity=0.544 Sum_probs=0.0
Q ss_pred CCcccccccCCccc-----eeCCCCccchhhhhc-----------CCCCCccccccc
Q 013848 389 NHVCPICLTDPKDM-----AFGCGHQTCCGCGQD-----------LDLCPICRSFIQ 429 (435)
Q Consensus 389 ~~~CpICl~~~~dv-----~~~CGH~fC~~C~~~-----------l~~CPiCR~~i~ 429 (435)
...|.+|...+.-. .-.||+.||..|... .+.|-.|-..+.
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l~ 431 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGELK 431 (434)
T ss_dssp ---------------------------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHHH
Confidence 45799998876532 128999999999852 246777765543
No 132
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=27.67 E-value=34 Score=37.32 Aligned_cols=47 Identities=15% Similarity=0.314 Sum_probs=27.1
Q ss_pred HHHHHhcCcccccC----CCC-hHHHHHHHH--HHHHhcCCceEEEEEEeCCccc
Q 013848 182 RRYRELVPHLRLAG----PTS-FAPIIEMAI--TIVEHSGGQYHVLVIIADGQVT 229 (435)
Q Consensus 182 ~~Yr~~~~~v~l~G----PT~-fapII~~a~--~~~~~~~~~Y~VLlIiTDG~i~ 229 (435)
+++.+.+.++..+| |-. |.-|+..|. +...... ..++||++||...+
T Consensus 193 ~~F~~~v~~~~isgn~D~PE~g~dAl~qa~vc~~~igWr~-a~rllV~~TDa~~H 246 (687)
T 3k6s_B 193 NQFQTEVGKQLISGNLDAPEGGLDAMMQVAACPEEIGWRN-VTRLLVFATDDGFH 246 (687)
T ss_dssp HHHHHHHHTSCCCCCSSSSCCHHHHHHHHTTCHHHHCCCS-SCCEEEEECSSCCC
T ss_pred HHHHHHHhhccccCCCCCCchHHHHHHHHhhcccccCCcc-ceEEEEEECCCccc
Confidence 34455555555555 433 444444442 3333344 67899999998766
No 133
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.45 E-value=40 Score=27.10 Aligned_cols=42 Identities=26% Similarity=0.570 Sum_probs=27.5
Q ss_pred CCCCCcccccccCCcc--cee--CCCCccchhhhhc--------CCCCCccccc
Q 013848 386 TSDNHVCPICLTDPKD--MAF--GCGHQTCCGCGQD--------LDLCPICRSF 427 (435)
Q Consensus 386 l~e~~~CpICl~~~~d--v~~--~CGH~fC~~C~~~--------l~~CPiCR~~ 427 (435)
..+...|.||...-.. +++ .|...|-..|+.. -+.||.|+..
T Consensus 13 ~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 13 FIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred ccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 3456789999876532 555 7775555566641 2479999764
No 134
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=26.63 E-value=24 Score=27.55 Aligned_cols=22 Identities=27% Similarity=0.732 Sum_probs=17.8
Q ss_pred CCCCccchhhhhcCCCCCccccc
Q 013848 405 GCGHQTCCGCGQDLDLCPICRSF 427 (435)
Q Consensus 405 ~CGH~fC~~C~~~l~~CPiCR~~ 427 (435)
.||+.||..|...+.. -.|...
T Consensus 55 ~C~~~FC~~C~~~wH~-~~C~~~ 76 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE-GECSAV 76 (80)
T ss_dssp CCSCCEETTTTEECCS-SCSSSC
T ss_pred CCCCeeccccCccccC-Cccccc
Confidence 4899999999998876 667553
No 135
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.10 E-value=34 Score=26.84 Aligned_cols=29 Identities=21% Similarity=0.502 Sum_probs=21.8
Q ss_pred CCCcccccccCCccce-----eCCCCccchhhhh
Q 013848 388 DNHVCPICLTDPKDMA-----FGCGHQTCCGCGQ 416 (435)
Q Consensus 388 e~~~CpICl~~~~dv~-----~~CGH~fC~~C~~ 416 (435)
+...|.+|...|.-.. -.||..||..|..
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 3458999998875422 2899999999975
No 136
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=25.28 E-value=28 Score=29.59 Aligned_cols=27 Identities=22% Similarity=0.501 Sum_probs=20.9
Q ss_pred CcccccccCCccc---e--eCCCCccchhhhh
Q 013848 390 HVCPICLTDPKDM---A--FGCGHQTCCGCGQ 416 (435)
Q Consensus 390 ~~CpICl~~~~dv---~--~~CGH~fC~~C~~ 416 (435)
..|.+|...|.-. . -.||+.||..|..
T Consensus 70 ~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~ 101 (125)
T 1joc_A 70 QNCMACGKGFSVTVRRHHCRQCGNIFCAECSA 101 (125)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSC
T ss_pred CCCcCcCCccccccccccCCCCCeEEChHHhC
Confidence 4799998877642 1 2899999999975
No 137
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=25.21 E-value=66 Score=26.09 Aligned_cols=32 Identities=19% Similarity=0.477 Sum_probs=22.5
Q ss_pred CCCCCcccccccCCccceeCC---CCccchhhhhc
Q 013848 386 TSDNHVCPICLTDPKDMAFGC---GHQTCCGCGQD 417 (435)
Q Consensus 386 l~e~~~CpICl~~~~dv~~~C---GH~fC~~C~~~ 417 (435)
...+..|.||-.......++| +-.|--.|+.+
T Consensus 12 ~~~D~~C~VC~~~t~~~l~pCRvC~RvfH~~CL~r 46 (89)
T 1wil_A 12 VVNDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRR 46 (89)
T ss_dssp CCCSCCCTTTCCCCSSCCSSCSSSSSCCCHHHHHH
T ss_pred CCCCcccCccccccccceeccccccccccHhhccc
Confidence 346779999987777777765 44444488864
No 138
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=24.16 E-value=18 Score=35.66 Aligned_cols=41 Identities=22% Similarity=0.574 Sum_probs=29.4
Q ss_pred CCCCcccccccCCcccee-----CCC--CccchhhhhcCC----CCCccccc
Q 013848 387 SDNHVCPICLTDPKDMAF-----GCG--HQTCCGCGQDLD----LCPICRSF 427 (435)
Q Consensus 387 ~e~~~CpICl~~~~dv~~-----~CG--H~fC~~C~~~l~----~CPiCR~~ 427 (435)
.....||||-..+.-.++ .=| +..|.-|...|. .||.|-..
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 345799999998876333 134 457889988773 89999875
No 139
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=23.21 E-value=74 Score=24.33 Aligned_cols=26 Identities=31% Similarity=0.613 Sum_probs=17.8
Q ss_pred CCCcccccccCCcccee--CCCCccchh
Q 013848 388 DNHVCPICLTDPKDMAF--GCGHQTCCG 413 (435)
Q Consensus 388 e~~~CpICl~~~~dv~~--~CGH~fC~~ 413 (435)
....|..|.....-+.| -||..||..
T Consensus 14 ~~~rC~~C~kkvgl~~f~CrCg~~FC~~ 41 (64)
T 1wg2_A 14 PNNRCFSCNKKVGVMGFKCKCGSTFCGS 41 (64)
T ss_dssp CSCSCTTTCCCCTTSCEECTTSCEECSS
T ss_pred cCCcChhhCCcccccCeEeecCCEeccc
Confidence 34689999876443344 788889874
No 140
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=23.20 E-value=36 Score=26.27 Aligned_cols=32 Identities=31% Similarity=0.611 Sum_probs=22.6
Q ss_pred CCCCCcccccccCCccceeCC-CCccchhhhhc
Q 013848 386 TSDNHVCPICLTDPKDMAFGC-GHQTCCGCGQD 417 (435)
Q Consensus 386 l~e~~~CpICl~~~~dv~~~C-GH~fC~~C~~~ 417 (435)
.++..-|.||.+..+---+.| |-.||..|-..
T Consensus 5 ~ee~pWC~ICneDAtlrC~gCdgDLYC~rC~rE 37 (67)
T 2d8v_A 5 SSGLPWCCICNEDATLRCAGCDGDLYCARCFRE 37 (67)
T ss_dssp CCCCSSCTTTCSCCCEEETTTTSEEECSSHHHH
T ss_pred CcCCCeeEEeCCCCeEEecCCCCceehHHHHHH
Confidence 345678999997533233488 78899999864
No 141
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=23.15 E-value=2.9e+02 Score=22.13 Aligned_cols=41 Identities=20% Similarity=0.390 Sum_probs=24.8
Q ss_pred CCCcccccccCCcc-cee--C--CC-Cccchhhhh------cCCCCCccccccc
Q 013848 388 DNHVCPICLTDPKD-MAF--G--CG-HQTCCGCGQ------DLDLCPICRSFIQ 429 (435)
Q Consensus 388 e~~~CpICl~~~~d-v~~--~--CG-H~fC~~C~~------~l~~CPiCR~~i~ 429 (435)
+...| ||....-. ++. . |. ..|-..|+. ..+.||.|+..-.
T Consensus 35 e~~yC-iC~~~~~g~MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~~~~ 87 (91)
T 1weu_A 35 EPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQESG 87 (91)
T ss_dssp CCBCS-TTCCBCCSCCCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCCCCS
T ss_pred CCcEE-ECCCCCCCCEeEecCCCCCCCCEecccCCcCcCCCCCEECcCccCcCC
Confidence 44556 99875433 443 4 54 456667764 2258999986543
No 142
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=23.10 E-value=31 Score=27.52 Aligned_cols=29 Identities=21% Similarity=0.368 Sum_probs=21.6
Q ss_pred CCcccccccCCccc---e--eCCCCccchhhhhc
Q 013848 389 NHVCPICLTDPKDM---A--FGCGHQTCCGCGQD 417 (435)
Q Consensus 389 ~~~CpICl~~~~dv---~--~~CGH~fC~~C~~~ 417 (435)
...|.+|...|.-. . -.||+.||..|...
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~ 53 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNR 53 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCC
Confidence 45799998876542 1 28999999999863
No 143
>3otr_A Enolase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel, TIM barrel; 2.75A {Toxoplasma gondii}
Probab=20.82 E-value=1.8e+02 Score=30.07 Aligned_cols=144 Identities=15% Similarity=0.227 Sum_probs=78.4
Q ss_pred cccHHHHHHHHHhcCCceeceEEEEecCCCCCCC---CCCCCCCCCcccCCCC--CC---HHHHHHHHHhhcccccCCCC
Q 013848 76 YHSLEQVTDALARAGLESSNLIVGIDFTKSNEWT---GARSFQRRSLHHIGDD--QN---PYEQAISIIGKTLSSFDEDN 147 (435)
Q Consensus 76 y~~ld~v~~al~~~Gl~~~nlivaIDFT~SN~~~---g~~~~~~~SLH~i~~~--~N---~Yq~AI~~Ig~vl~~yD~D~ 147 (435)
-.-||-|.+|+.++|++ -.+.+|+|+.+|--+. |+ | .|.+-++. .+ .-+++|.-+-+.++.|+
T Consensus 228 ~eaL~ll~~Ai~~aGy~-~~i~i~lD~Aasefy~~~~g~--Y---~l~fk~~~~~~~~~~t~~Elid~y~~lle~yp--- 298 (452)
T 3otr_A 228 EEALNLLVEAIKAAGYE-GKIKIAFDAAASEFYKQDEKK--Y---DLDYKCKTKNASKHLTGEKLKEVYEGWLKKYP--- 298 (452)
T ss_dssp HHHHHHHHHHHHHHTCT-TTSEEEEECCGGGGEETTTTE--E---ETTTTCSSCCGGGEECHHHHHHHHHHHHHHSC---
T ss_pred HHHHHHHHHHHHHcCCC-ceEEEccccchHhheeccCCe--E---EeeccCCCCcccccccHHHHHHHHHHHHhhhC---
Confidence 34478899999999999 5999999999986431 11 1 11111110 01 25888888888888764
Q ss_pred ccceeeeCCCCCCCCcccccCCCCCccCCHHHHHHHHHHhcCcccccCCCChHHHHHHHHHHHHhcCCceEEEEE-EeC-
Q 013848 148 LIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSGGQYHVLVI-IAD- 225 (435)
Q Consensus 148 ~ip~fGFGa~~~~~~~vF~~~~~~~~~~G~~gvl~~Yr~~~~~v~l~GPT~fapII~~a~~~~~~~~~~Y~VLlI-iTD- 225 (435)
+.-+-+- |. -..++++-...++.-..+++.|-..|.--.+.+.+.++... ..+|+| +..
T Consensus 299 ---Iv~IEDP---------l~-----~dD~eg~a~Lt~~lg~~iqIvGDDl~vTn~~~i~~~Ie~~a--~n~IlIKvnQI 359 (452)
T 3otr_A 299 ---IISVEDP---------FD-----QDDFASFSAFTKDVGEKTQVIGDDILVTNILRIEKALKDKA--CNCLLLKVNQI 359 (452)
T ss_dssp ---EEEEECC---------SC-----TTCHHHHHHHHHHHTTTSEEEESTTTTTCHHHHHHHHHHTC--CSEEEECHHHH
T ss_pred ---ceEEecC---------CC-----hhhHHHHHHHHHhhCCCeEEEeCccccCCHHHHHHHHhcCC--CCEEEeecccc
Confidence 3333221 11 12456655544444345777676554221233333333322 222222 221
Q ss_pred CcccccCCcccCccchhHHHHHHHHHHhcCCCeEEEE
Q 013848 226 GQVTRSVDTEHGQLSSQEKKTVEAIVKASEYPLSIIL 262 (435)
Q Consensus 226 G~i~d~~d~~~~~~~~~~~~T~~aIv~AS~~PLSIIi 262 (435)
|.|| ++++++.-|-..-+.+++
T Consensus 360 GgIT---------------Ealka~~lA~~~G~~vmv 381 (452)
T 3otr_A 360 GSVT---------------EAIEACLLAQKSGWGVQV 381 (452)
T ss_dssp CCHH---------------HHHHHHHHHHHTTCEEEE
T ss_pred ccHH---------------HHHHHHHHHHHcCCeEEE
Confidence 5555 677777777666655544
No 144
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=20.20 E-value=1e+02 Score=22.54 Aligned_cols=39 Identities=18% Similarity=0.504 Sum_probs=27.1
Q ss_pred CCCCcccccccCCcccee--CCCCccchhhhhc--------CCCCCcccc
Q 013848 387 SDNHVCPICLTDPKDMAF--GCGHQTCCGCGQD--------LDLCPICRS 426 (435)
Q Consensus 387 ~e~~~CpICl~~~~dv~~--~CGH~fC~~C~~~--------l~~CPiCR~ 426 (435)
.++..|.||.+. .++++ .|...|-..|+.. -+.||.|+.
T Consensus 9 ~~~~~C~vC~~~-g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 9 DHQDYCEVCQQG-GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCCSSCTTTSCC-SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCccCCCC-CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 345789999873 34555 7776677788863 148999975
No 145
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.19 E-value=57 Score=23.48 Aligned_cols=39 Identities=18% Similarity=0.627 Sum_probs=25.9
Q ss_pred CCCCcccccccCCcccee--CCCCccchhhhhc--------CCCCCcccc
Q 013848 387 SDNHVCPICLTDPKDMAF--GCGHQTCCGCGQD--------LDLCPICRS 426 (435)
Q Consensus 387 ~e~~~CpICl~~~~dv~~--~CGH~fC~~C~~~--------l~~CPiCR~ 426 (435)
.++..|.||.+. .++++ .|...|-..|+.. .+.||.|+.
T Consensus 7 ~~~~~C~vC~~~-g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS-GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS-SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC-CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 456789999874 34555 7776666677752 247998864
No 146
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=20.10 E-value=59 Score=23.94 Aligned_cols=44 Identities=27% Similarity=0.527 Sum_probs=28.0
Q ss_pred CCCCcccccccCC----cccee--CCCCccchhhhh-----------cCCCCCcccccccc
Q 013848 387 SDNHVCPICLTDP----KDMAF--GCGHQTCCGCGQ-----------DLDLCPICRSFIQT 430 (435)
Q Consensus 387 ~e~~~CpICl~~~----~dv~~--~CGH~fC~~C~~-----------~l~~CPiCR~~i~~ 430 (435)
.++..|.||.... ..+++ .|.-.|-..|+. ..+.|+.|+.....
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~~ 64 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTT 64 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTSC
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcccc
Confidence 4567999999763 22555 777555555543 22589999765543
Done!