Query 013850
Match_columns 435
No_of_seqs 158 out of 1374
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 18:16:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013850.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013850hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ni2_A 4-coumarate:COA ligase; 100.0 4.9E-66 1.7E-70 511.3 36.9 410 7-434 4-420 (536)
2 2d1s_A Luciferase, luciferin 4 100.0 1.4E-63 4.7E-68 494.6 38.7 410 5-434 5-427 (548)
3 3rix_A Luciferase, luciferin 4 100.0 1.8E-63 6.3E-68 494.5 38.0 407 9-434 5-425 (550)
4 3g7s_A Long-chain-fatty-acid-- 100.0 2.9E-63 1E-67 492.9 35.3 398 12-434 7-425 (549)
5 3t5a_A Long-chain-fatty-acid-- 100.0 8.8E-63 3E-67 482.7 27.9 389 26-434 23-469 (480)
6 3r44_A Fatty acyl COA syntheta 100.0 2.4E-62 8.1E-67 482.6 31.1 385 26-434 15-399 (517)
7 3tsy_A Fusion protein 4-coumar 100.0 1.2E-61 4.2E-66 511.4 36.8 415 9-434 45-467 (979)
8 4fuq_A Malonyl COA synthetase; 100.0 1E-61 3.4E-66 476.6 30.5 377 31-434 4-385 (503)
9 3o83_A Peptide arylation enzym 100.0 1.3E-61 4.5E-66 480.3 31.5 384 27-434 30-425 (544)
10 3fce_A D-alanine--poly(phospho 100.0 1.6E-61 5.4E-66 476.8 31.7 380 27-434 1-386 (512)
11 3etc_A AMP-binding protein; ad 100.0 4.9E-61 1.7E-65 478.6 35.6 392 19-434 49-461 (580)
12 1mdb_A 2,3-dihydroxybenzoate-A 100.0 3.2E-61 1.1E-65 477.0 33.3 380 27-434 25-416 (539)
13 1t5h_X 4-chlorobenzoyl COA lig 100.0 1.6E-60 5.3E-65 468.7 34.9 375 27-434 2-388 (504)
14 1v25_A Long-chain-fatty-acid-C 100.0 3.4E-60 1.2E-64 469.8 36.0 385 27-434 18-421 (541)
15 3e7w_A D-alanine--poly(phospho 100.0 2.2E-60 7.4E-65 468.5 31.8 378 27-434 1-385 (511)
16 2v7b_A Benzoate-coenzyme A lig 100.0 6.6E-60 2.3E-64 467.1 35.2 383 28-434 25-415 (529)
17 3ivr_A Putative long-chain-fat 100.0 5.6E-60 1.9E-64 465.5 33.8 375 26-434 5-384 (509)
18 3l8c_A D-alanine--poly(phospho 100.0 3.2E-60 1.1E-64 468.8 30.7 379 27-434 4-389 (521)
19 1pg4_A Acetyl-COA synthetase; 100.0 1.3E-59 4.5E-64 474.6 35.5 396 28-434 77-503 (652)
20 3c5e_A Acyl-coenzyme A synthet 100.0 2.3E-59 7.9E-64 465.9 35.7 382 27-434 37-442 (570)
21 4dg8_A PA1221; ANL superfamily 100.0 1.1E-59 3.9E-64 471.3 33.2 371 26-434 26-405 (620)
22 1amu_A GRSA, gramicidin synthe 100.0 2.2E-59 7.5E-64 465.4 35.0 379 17-434 31-416 (563)
23 4gr5_A Non-ribosomal peptide s 100.0 9.6E-60 3.3E-64 469.5 32.4 372 27-434 75-455 (570)
24 1ry2_A Acetyl-coenzyme A synth 100.0 4E-59 1.4E-63 471.2 34.5 398 28-434 83-512 (663)
25 3rg2_A Enterobactin synthase c 100.0 1.7E-58 5.9E-63 464.5 36.2 380 27-434 27-420 (617)
26 3kxw_A Saframycin MX1 syntheta 100.0 6.8E-59 2.3E-63 466.4 29.1 388 27-434 11-445 (590)
27 3ite_A SIDN siderophore synthe 100.0 1.6E-57 5.5E-62 453.3 32.8 380 26-434 19-413 (562)
28 3ipl_A 2-succinylbenzoate--COA 100.0 4.1E-58 1.4E-62 451.5 27.8 381 27-434 1-384 (501)
29 3gqw_A Fatty acid AMP ligase; 100.0 3E-57 1E-61 453.5 31.8 378 27-434 21-448 (576)
30 3nyq_A Malonyl-COA ligase; A/B 100.0 5E-58 1.7E-62 450.3 21.7 363 27-434 22-391 (505)
31 2vsq_A Surfactin synthetase su 100.0 3.4E-56 1.2E-60 481.2 31.4 376 27-434 464-847 (1304)
32 3qov_A Phenylacetate-coenzyme 100.0 3E-33 1E-37 269.7 18.2 206 188-399 81-291 (436)
33 3hgu_A EHPF; phenazine, antibi 100.0 2.1E-32 7.2E-37 257.9 14.8 220 188-418 87-341 (369)
34 2y27_A Phenylacetate-coenzyme 100.0 7.8E-32 2.7E-36 259.9 18.9 224 187-434 85-313 (437)
35 2y4o_A Phenylacetate-coenzyme 100.0 1.6E-31 5.6E-36 258.1 17.6 207 187-399 87-298 (443)
36 4gs5_A Acyl-COA synthetase (AM 100.0 1.1E-31 3.6E-36 251.1 11.5 193 191-404 36-228 (358)
37 4eql_A 4-substituted benzoates 97.2 0.0019 6.5E-08 62.8 10.5 33 188-220 89-122 (581)
38 4b2g_A GH3-1 auxin conjugating 97.1 0.00081 2.8E-08 65.5 7.0 31 189-219 96-127 (609)
39 4epl_A Jasmonic acid-amido syn 96.5 0.0082 2.8E-07 58.2 8.7 33 187-219 93-126 (581)
40 2y27_A Phenylacetate-coenzyme 95.2 0.15 5E-06 48.2 11.5 101 40-141 88-197 (437)
41 2y4o_A Phenylacetate-coenzyme 94.8 0.17 6E-06 47.8 10.9 88 53-141 110-199 (443)
42 3qov_A Phenylacetate-coenzyme 94.8 0.15 5.1E-06 48.1 10.3 99 42-141 86-193 (436)
43 4gs5_A Acyl-COA synthetase (AM 94.7 0.0073 2.5E-07 55.6 0.8 44 387-434 194-237 (358)
44 3hgu_A EHPF; phenazine, antibi 90.8 0.82 2.8E-05 41.8 8.6 87 53-141 109-220 (369)
45 3ipl_A 2-succinylbenzoate--COA 90.4 2.5 8.4E-05 40.5 12.0 101 39-143 160-268 (501)
46 1mdb_A 2,3-dihydroxybenzoate-A 89.4 4.3 0.00015 39.2 12.9 99 39-141 179-287 (539)
47 2d1s_A Luciferase, luciferin 4 89.3 1.7 5.8E-05 42.2 9.9 99 42-142 192-299 (548)
48 3o83_A Peptide arylation enzym 88.4 4.7 0.00016 39.0 12.4 98 40-141 189-296 (544)
49 3r44_A Fatty acyl COA syntheta 86.7 5.4 0.00019 38.3 11.6 97 40-141 168-273 (517)
50 3fce_A D-alanine--poly(phospho 86.0 3.8 0.00013 39.3 10.0 99 40-141 142-250 (512)
51 3e7w_A D-alanine--poly(phospho 85.4 3.9 0.00013 39.2 9.8 100 40-142 141-250 (511)
52 3rix_A Luciferase, luciferin 4 84.3 4.9 0.00017 39.0 10.0 101 41-142 189-297 (550)
53 3rg2_A Enterobactin synthase c 84.1 12 0.00041 36.8 12.9 97 40-140 182-288 (617)
54 3kxw_A Saframycin MX1 syntheta 83.4 5.2 0.00018 39.1 9.9 99 39-140 164-274 (590)
55 3g7s_A Long-chain-fatty-acid-- 82.9 6.3 0.00022 38.1 10.2 96 42-141 180-283 (549)
56 1t5h_X 4-chlorobenzoyl COA lig 82.5 6.3 0.00022 37.6 9.9 99 39-141 150-259 (504)
57 3ivr_A Putative long-chain-fat 81.8 10 0.00034 36.2 11.0 99 39-142 157-264 (509)
58 3c5e_A Acyl-coenzyme A synthet 81.1 11 0.00038 36.6 11.2 101 39-142 203-313 (570)
59 1v25_A Long-chain-fatty-acid-C 79.7 8.4 0.00029 37.2 9.7 101 40-141 174-282 (541)
60 2v7b_A Benzoate-coenzyme A lig 77.5 6.4 0.00022 37.8 8.1 100 40-142 181-290 (529)
61 3nyq_A Malonyl-COA ligase; A/B 76.2 19 0.00066 34.2 11.1 99 39-142 152-259 (505)
62 1amu_A GRSA, gramicidin synthe 75.7 7.3 0.00025 37.8 8.0 98 40-140 180-287 (563)
63 3t5a_A Long-chain-fatty-acid-- 75.6 14 0.00048 34.8 9.9 108 190-299 37-148 (480)
64 4gr5_A Non-ribosomal peptide s 73.2 16 0.00054 35.5 9.8 100 39-142 211-319 (570)
65 4fuq_A Malonyl COA synthetase; 72.6 16 0.00056 34.7 9.5 98 39-142 152-258 (503)
66 1pg4_A Acetyl-COA synthetase; 71.6 19 0.00064 35.7 10.0 100 41-142 255-366 (652)
67 4dg8_A PA1221; ANL superfamily 71.3 16 0.00056 35.9 9.4 98 40-141 162-268 (620)
68 3tbh_A O-acetyl serine sulfhyd 71.1 15 0.00051 32.9 8.3 93 41-135 34-127 (334)
69 3etc_A AMP-binding protein; ad 68.9 17 0.00057 35.4 8.8 100 40-142 223-332 (580)
70 3ni2_A 4-coumarate:COA ligase; 68.7 31 0.0011 33.1 10.6 99 189-296 34-134 (536)
71 3l8c_A D-alanine--poly(phospho 67.3 37 0.0013 32.3 10.8 101 40-141 143-253 (521)
72 3tsy_A Fusion protein 4-coumar 67.1 18 0.00061 37.9 9.1 102 39-141 222-333 (979)
73 3gqw_A Fatty acid AMP ligase; 67.1 15 0.00053 35.4 8.2 99 40-140 174-284 (576)
74 3vc3_A Beta-cyanoalnine syntha 65.8 23 0.00079 31.8 8.4 94 41-135 49-142 (344)
75 1ry2_A Acetyl-coenzyme A synth 64.6 57 0.0019 32.3 11.8 97 190-291 95-194 (663)
76 3ite_A SIDN siderophore synthe 58.1 32 0.0011 33.2 8.5 88 53-140 193-286 (562)
77 3ezx_A MMCP 1, monomethylamine 56.8 63 0.0022 26.6 8.9 92 236-329 93-195 (215)
78 2vsq_A Surfactin synthetase su 55.4 35 0.0012 37.0 9.0 100 39-142 604-713 (1304)
79 1z7w_A Cysteine synthase; tran 53.0 52 0.0018 29.0 8.4 92 42-135 30-122 (322)
80 4aec_A Cysteine synthase, mito 51.8 53 0.0018 30.5 8.3 91 42-134 138-229 (430)
81 3ju7_A Putative PLP-dependent 47.8 46 0.0016 30.1 7.4 62 69-133 68-136 (377)
82 2q3b_A Cysteine synthase A; py 45.7 87 0.003 27.4 8.6 91 42-135 31-122 (313)
83 4eez_A Alcohol dehydrogenase 1 45.0 45 0.0016 29.7 6.8 77 54-133 136-215 (348)
84 1o69_A Aminotransferase; struc 42.0 1E+02 0.0036 27.7 8.9 61 71-134 64-130 (394)
85 2pqm_A Cysteine synthase; OASS 41.2 88 0.003 27.9 8.0 91 42-135 42-133 (343)
86 2egu_A Cysteine synthase; O-ac 40.5 94 0.0032 27.1 8.0 91 42-135 29-120 (308)
87 3dwg_A Cysteine synthase B; su 40.3 1E+02 0.0035 27.2 8.2 89 43-134 38-127 (325)
88 4h1h_A LMO1638 protein; MCCF-l 39.7 1.1E+02 0.0036 27.2 8.2 60 75-134 8-86 (327)
89 3s2e_A Zinc-containing alcohol 39.1 1E+02 0.0036 27.2 8.2 77 53-133 138-217 (340)
90 3ri6_A O-acetylhomoserine sulf 39.1 92 0.0031 28.8 8.0 25 323-347 357-381 (430)
91 1y80_A Predicted cobalamin bin 38.9 98 0.0034 25.2 7.4 56 79-134 88-147 (210)
92 2jtq_A Phage shock protein E; 38.8 50 0.0017 22.1 4.7 45 53-104 22-66 (85)
93 3tla_A MCCF; serine protease, 38.7 1.1E+02 0.0036 27.8 8.0 61 74-134 38-117 (371)
94 3tqh_A Quinone oxidoreductase; 38.1 86 0.0029 27.5 7.4 76 53-133 124-203 (321)
95 3dzz_A Putative pyridoxal 5'-p 36.3 1.2E+02 0.0042 27.0 8.4 55 76-133 106-167 (391)
96 3l6b_A Serine racemase; pyrido 35.6 57 0.0019 29.2 5.8 54 83-136 79-132 (346)
97 2hjv_A ATP-dependent RNA helic 35.1 1.4E+02 0.0049 22.8 7.5 75 63-140 22-99 (163)
98 3sr3_A Microcin immunity prote 35.0 1.2E+02 0.0041 27.0 7.7 60 75-134 9-87 (336)
99 4e5s_A MCCFLIKE protein (BA_56 34.9 1.4E+02 0.0049 26.4 8.2 60 75-134 8-86 (331)
100 1zsy_A Mitochondrial 2-enoyl t 34.9 1.3E+02 0.0044 26.8 8.1 79 54-133 139-223 (357)
101 3a2b_A Serine palmitoyltransfe 33.9 2.4E+02 0.0081 25.2 10.0 55 76-134 124-181 (398)
102 1mdo_A ARNB aminotransferase; 33.7 95 0.0032 27.8 7.2 59 71-133 71-134 (393)
103 1y7l_A O-acetylserine sulfhydr 33.7 1.5E+02 0.0051 25.9 8.2 91 42-135 26-117 (316)
104 1h2b_A Alcohol dehydrogenase; 33.6 1.1E+02 0.0038 27.3 7.5 61 70-133 176-238 (359)
105 2e7j_A SEP-tRNA:Cys-tRNA synth 33.4 1.7E+02 0.0057 25.8 8.8 56 76-134 90-155 (371)
106 3ss7_X D-serine dehydratase; t 32.6 2.6E+02 0.0088 25.9 9.9 96 42-137 101-217 (442)
107 1eg5_A Aminotransferase; PLP-d 32.4 1.3E+02 0.0044 26.6 7.9 56 77-133 87-146 (384)
108 1t5i_A C_terminal domain of A 31.3 1.8E+02 0.0062 22.5 8.1 73 63-138 18-93 (172)
109 3ijw_A Aminoglycoside N3-acety 31.2 33 0.0011 29.5 3.2 25 65-89 18-42 (268)
110 2rb4_A ATP-dependent RNA helic 30.8 1.8E+02 0.0061 22.5 7.5 73 63-138 21-96 (175)
111 1ve1_A O-acetylserine sulfhydr 30.5 2E+02 0.007 24.8 8.5 91 43-135 25-117 (304)
112 3two_A Mannitol dehydrogenase; 30.0 1.5E+02 0.0051 26.2 7.7 74 54-131 149-225 (348)
113 3jv7_A ADH-A; dehydrogenase, n 29.8 1.2E+02 0.0042 26.8 7.1 77 55-134 143-224 (345)
114 2jgn_A DBX, DDX3, ATP-dependen 29.6 1.7E+02 0.0059 23.0 7.3 76 63-140 32-110 (185)
115 1urh_A 3-mercaptopyruvate sulf 29.5 94 0.0032 26.6 6.0 40 65-104 72-112 (280)
116 3zrp_A Serine-pyruvate aminotr 29.4 1.7E+02 0.0057 25.9 8.1 58 76-134 74-135 (384)
117 3b8x_A WBDK, pyridoxamine 5-ph 29.2 2.1E+02 0.0072 25.5 8.7 55 75-133 76-135 (390)
118 2v03_A Cysteine synthase B; py 29.2 2.1E+02 0.007 24.8 8.2 89 43-134 26-115 (303)
119 3sma_A FRBF; N-acetyl transfer 29.0 38 0.0013 29.4 3.2 31 52-89 19-49 (286)
120 2nyg_A YOKD protein; PFAM02522 28.9 38 0.0013 29.2 3.2 24 66-89 17-40 (273)
121 1t3i_A Probable cysteine desul 28.8 1.4E+02 0.0047 26.9 7.4 13 208-220 238-250 (420)
122 3kki_A CAI-1 autoinducer synth 28.6 1.2E+02 0.0042 27.4 7.0 55 76-134 140-194 (409)
123 2fsx_A RV0390, COG0607: rhodan 28.5 50 0.0017 25.1 3.6 40 65-104 66-105 (148)
124 3ndn_A O-succinylhomoserine su 28.4 1.8E+02 0.0062 26.5 8.1 30 101-132 143-172 (414)
125 3kgw_A Alanine-glyoxylate amin 28.0 1.3E+02 0.0045 26.7 7.1 13 208-220 218-230 (393)
126 3isl_A Purine catabolism prote 27.9 1.5E+02 0.0052 26.6 7.6 13 208-220 206-218 (416)
127 2bkw_A Alanine-glyoxylate amin 27.6 2.1E+02 0.007 25.3 8.3 56 77-133 84-144 (385)
128 3fpc_A NADP-dependent alcohol 27.4 1E+02 0.0036 27.3 6.1 77 53-133 138-218 (352)
129 1o58_A O-acetylserine sulfhydr 27.0 2E+02 0.0069 24.9 7.8 88 43-135 32-120 (303)
130 3euc_A Histidinol-phosphate am 27.0 1.7E+02 0.0058 25.8 7.6 55 76-133 106-164 (367)
131 3n75_A LDC, lysine decarboxyla 26.4 2E+02 0.0067 28.8 8.2 56 76-134 232-306 (715)
132 1elu_A L-cysteine/L-cystine C- 26.4 1.3E+02 0.0044 26.7 6.7 10 209-218 229-238 (390)
133 2c81_A Glutamine-2-deoxy-scyll 26.4 1.1E+02 0.0037 27.8 6.2 59 71-133 74-137 (418)
134 4ej6_A Putative zinc-binding d 26.2 1.9E+02 0.0064 25.9 7.6 59 70-132 174-233 (370)
135 1rjw_A ADH-HT, alcohol dehydro 26.1 2.2E+02 0.0076 25.0 8.1 58 70-131 156-213 (339)
136 1gu7_A Enoyl-[acyl-carrier-pro 25.9 1.5E+02 0.0051 26.4 6.9 79 54-133 138-223 (364)
137 2duw_A Putative COA-binding pr 25.8 1.3E+02 0.0043 22.8 5.5 48 80-128 72-119 (145)
138 1c7n_A Cystalysin; transferase 25.8 1.7E+02 0.0057 26.2 7.4 53 77-132 111-170 (399)
139 1e0c_A Rhodanese, sulfurtransf 25.6 1E+02 0.0035 26.1 5.5 40 66-105 210-249 (271)
140 3i16_A Aluminum resistance pro 25.4 1.6E+02 0.0055 27.2 7.1 59 76-134 112-184 (427)
141 1d2f_A MALY protein; aminotran 25.2 1.9E+02 0.0066 25.7 7.7 54 76-132 108-168 (390)
142 2rkb_A Serine dehydratase-like 25.0 2.8E+02 0.0096 24.1 8.4 88 43-136 23-110 (318)
143 2z61_A Probable aspartate amin 25.0 1.9E+02 0.0066 25.5 7.6 51 76-132 110-160 (370)
144 3hvy_A Cystathionine beta-lyas 24.9 1.9E+02 0.0066 26.6 7.5 59 76-134 113-184 (427)
145 2z9v_A Aspartate aminotransfer 24.8 1.5E+02 0.0051 26.4 6.8 57 76-133 80-141 (392)
146 1e0c_A Rhodanese, sulfurtransf 24.8 1.1E+02 0.0036 26.0 5.5 40 65-104 67-107 (271)
147 4dq6_A Putative pyridoxal phos 24.7 1.9E+02 0.0064 25.7 7.5 53 76-133 111-171 (391)
148 3nnk_A Ureidoglycine-glyoxylat 24.7 2E+02 0.0068 25.7 7.7 20 114-133 126-145 (411)
149 2ch1_A 3-hydroxykynurenine tra 24.6 1.9E+02 0.0066 25.7 7.6 55 77-132 91-149 (396)
150 1b9h_A AHBA synthase, protein 24.6 1.8E+02 0.0062 25.9 7.3 57 71-131 70-131 (388)
151 4hvk_A Probable cysteine desul 24.5 98 0.0034 27.4 5.5 10 323-332 302-311 (382)
152 2cf5_A Atccad5, CAD, cinnamyl 24.4 1.2E+02 0.0041 27.0 6.0 78 54-134 152-233 (357)
153 4h27_A L-serine dehydratase/L- 24.3 1.3E+02 0.0045 27.0 6.2 88 43-136 62-149 (364)
154 3olh_A MST, 3-mercaptopyruvate 24.1 1E+02 0.0035 26.9 5.2 41 65-105 240-280 (302)
155 3kax_A Aminotransferase, class 24.1 2.3E+02 0.008 24.9 8.0 54 76-133 103-163 (383)
156 1fuk_A Eukaryotic initiation f 24.1 2.4E+02 0.0082 21.4 8.4 74 64-140 18-94 (165)
157 4eb5_A Probable cysteine desul 24.1 94 0.0032 27.6 5.3 15 323-339 302-316 (382)
158 4b7c_A Probable oxidoreductase 24.0 2.1E+02 0.0072 25.0 7.5 58 72-132 143-201 (336)
159 3cai_A Possible aminotransfera 24.0 1.5E+02 0.0051 26.6 6.6 12 208-219 233-245 (406)
160 3mfq_A TROA, high-affinity zin 23.9 82 0.0028 27.2 4.5 81 56-138 137-224 (282)
161 3t18_A Aminotransferase class 23.9 2.5E+02 0.0084 25.3 8.2 55 76-133 122-185 (413)
162 3cq5_A Histidinol-phosphate am 23.8 2.7E+02 0.0092 24.5 8.3 54 77-133 114-171 (369)
163 1kmj_A Selenocysteine lyase; p 23.8 1.5E+02 0.0052 26.4 6.7 13 208-220 233-245 (406)
164 1uuf_A YAHK, zinc-type alcohol 23.6 1.3E+02 0.0046 26.9 6.1 75 55-133 168-245 (369)
165 3goh_A Alcohol dehydrogenase, 23.5 1.7E+02 0.0058 25.4 6.7 74 53-131 114-190 (315)
166 3ezx_A MMCP 1, monomethylamine 23.3 3E+02 0.01 22.4 9.7 82 53-134 57-153 (215)
167 3f9t_A TDC, L-tyrosine decarbo 23.3 3.8E+02 0.013 23.5 9.3 54 77-133 121-178 (397)
168 3ly1_A Putative histidinol-pho 22.9 3.7E+02 0.013 23.3 9.2 55 76-133 89-148 (354)
169 3ujp_A Mn transporter subunit; 22.8 1.1E+02 0.0037 26.9 5.1 81 56-138 164-251 (307)
170 1e5e_A MGL, methionine gamma-l 22.8 2.1E+02 0.0071 25.9 7.3 11 209-219 220-230 (404)
171 1pl8_A Human sorbitol dehydrog 22.7 1.6E+02 0.0056 26.1 6.5 74 54-132 145-222 (356)
172 1urh_A 3-mercaptopyruvate sulf 22.6 1.3E+02 0.0044 25.6 5.6 52 54-105 200-256 (280)
173 1rhs_A Sulfur-substituted rhod 22.4 1.3E+02 0.0044 26.0 5.6 41 65-105 226-266 (296)
174 4d9i_A Diaminopropionate ammon 22.3 3.3E+02 0.011 24.7 8.6 56 82-137 114-169 (398)
175 3frk_A QDTB; aminotransferase, 22.3 93 0.0032 27.7 4.8 60 69-132 66-130 (373)
176 1vjo_A Alanine--glyoxylate ami 22.2 3.4E+02 0.012 24.0 8.7 12 209-220 230-241 (393)
177 2oga_A Transaminase; PLP-depen 22.1 2.3E+02 0.0079 25.4 7.6 58 71-132 95-157 (399)
178 2h6e_A ADH-4, D-arabinose 1-de 22.1 1.9E+02 0.0066 25.4 6.8 54 75-132 168-222 (344)
179 3d1p_A Putative thiosulfate su 22.0 1.1E+02 0.0037 22.7 4.4 52 54-105 62-117 (139)
180 3qwb_A Probable quinone oxidor 22.0 3.9E+02 0.013 23.2 9.1 56 74-133 144-200 (334)
181 1zd0_A Hypothetical protein PF 22.0 1E+02 0.0036 23.7 4.1 58 65-125 86-144 (150)
182 2w8t_A SPT, serine palmitoyltr 21.9 4.4E+02 0.015 23.8 9.5 55 76-134 145-202 (427)
183 2cb1_A O-acetyl homoserine sul 21.9 2E+02 0.0067 26.1 7.0 55 76-133 92-147 (412)
184 3a2k_A TRNA(Ile)-lysidine synt 21.8 3.2E+02 0.011 25.5 8.4 70 66-135 4-87 (464)
185 1toa_A Tromp-1, protein (perip 21.7 1.1E+02 0.0037 27.0 4.9 79 57-137 172-257 (313)
186 3jzl_A Putative cystathionine 21.6 1.9E+02 0.0066 26.4 6.8 58 76-134 98-167 (409)
187 3bul_A Methionine synthase; tr 21.5 4.6E+02 0.016 25.3 9.5 56 79-134 98-157 (579)
188 1uar_A Rhodanese; sulfurtransf 21.5 86 0.003 26.9 4.2 40 65-104 219-259 (285)
189 3nyt_A Aminotransferase WBPE; 21.4 85 0.0029 27.9 4.3 60 69-132 65-129 (367)
190 2l66_A SSO7C4, transcriptional 21.4 1E+02 0.0035 18.6 3.4 19 71-89 21-39 (53)
191 3krt_A Crotonyl COA reductase; 21.3 2.5E+02 0.0087 25.9 7.7 77 53-133 197-280 (456)
192 2ayi_A Aminopeptidase T; metal 21.3 1.4E+02 0.0047 27.5 5.6 51 60-110 4-58 (408)
193 3ecd_A Serine hydroxymethyltra 21.1 2.4E+02 0.0084 25.3 7.6 58 76-133 115-179 (425)
194 3pc3_A CG1753, isoform A; CBS, 21.0 2.7E+02 0.0091 26.5 7.9 61 73-134 106-167 (527)
195 2yxb_A Coenzyme B12-dependent 20.8 2.9E+02 0.0099 21.2 6.9 42 93-134 36-77 (161)
196 2p6n_A ATP-dependent RNA helic 20.7 3.1E+02 0.011 21.6 7.4 72 62-137 41-115 (191)
197 1piw_A Hypothetical zinc-type 20.7 2.6E+02 0.0088 24.8 7.4 76 54-133 152-230 (360)
198 2huf_A Alanine glyoxylate amin 20.7 2.6E+02 0.0089 24.8 7.6 12 209-220 215-226 (393)
199 3rq1_A Aminotransferase class 20.5 4.1E+02 0.014 23.7 9.0 55 76-133 123-186 (418)
200 3utn_X Thiosulfate sulfurtrans 20.5 2E+02 0.0069 25.4 6.4 41 64-104 98-139 (327)
201 2e18_A NH(3)-dependent NAD(+) 20.4 2E+02 0.0068 24.2 6.2 70 62-134 8-83 (257)
202 1y81_A Conserved hypothetical 20.4 1.5E+02 0.005 22.2 4.8 50 79-129 70-119 (138)
203 1yqd_A Sinapyl alcohol dehydro 20.4 2.1E+02 0.0071 25.6 6.7 61 70-133 178-239 (366)
204 1kol_A Formaldehyde dehydrogen 20.3 2E+02 0.007 25.9 6.7 56 71-130 178-234 (398)
205 3n0l_A Serine hydroxymethyltra 20.2 3.1E+02 0.01 24.5 8.0 59 76-134 108-172 (417)
206 1e3j_A NADP(H)-dependent ketos 20.1 2E+02 0.0068 25.4 6.5 74 54-132 142-218 (352)
207 1j32_A Aspartate aminotransfer 20.1 3.4E+02 0.011 24.0 8.2 53 76-132 111-169 (388)
208 1jbq_A B, cystathionine beta-s 20.0 3.2E+02 0.011 25.3 7.9 88 44-134 127-215 (435)
No 1
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=4.9e-66 Score=511.35 Aligned_cols=410 Identities=34% Similarity=0.547 Sum_probs=348.8
Q ss_pred CccceeecCCCCCCCCCCCCCchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEc
Q 013850 7 GRDGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFA 86 (435)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~ 86 (435)
++..++++..++..+|.+ .|+.++|.++++++|+++|+++.+.++.+||+||.++++++|+.|++.|+++||+|+|++
T Consensus 4 ~~~~i~~~~~~~~~~p~~--~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~ 81 (536)
T 3ni2_A 4 QEEFIFRSKLPDIYIPKN--LPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFL 81 (536)
T ss_dssp -CCCCBCCSSCCCCCCSS--CCHHHHHTTTGGGSTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEEC
T ss_pred ccceEEecCCCCCCCCCC--CcHHHHHHHHhhcCCCceEEEECCCCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEc
Confidence 566788888888888876 899999999999999999999876678999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcC--CCcEEeccCCcccccccccc
Q 013850 87 PNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN--LPAVLLGSKDKVSSSGLISR 164 (435)
Q Consensus 87 ~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 164 (435)
+|++++++++|||+++|++++|+++.++.+++.++++.++++++|++....+.+.... ....++..+ ..
T Consensus 82 ~~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---------~~ 152 (536)
T 3ni2_A 82 PSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESDVKVMCVD---------SA 152 (536)
T ss_dssp CSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHHTCEEEESS---------CC
T ss_pred CCcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhcCceEEEec---------CC
Confidence 9999999999999999999999999999999999999999999999988766654432 111222222 11
Q ss_pred cccccchhhhhhhcCCCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhh--hccCCCcEEEecc
Q 013850 165 SSKIVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQE--LVGELDHVVLCVL 242 (435)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~--~~~~~~d~~l~~~ 242 (435)
......+.++..... ...+.....++++++|+|||||||.||+|.++|+++.+.+........ +....+|++++.+
T Consensus 153 ~~~~~~~~~~~~~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~ 230 (536)
T 3ni2_A 153 PDGCLHFSELTQADE--NEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVL 230 (536)
T ss_dssp CTTCEETHHHHTSCG--GGCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECS
T ss_pred CCCccCHHHHhhccc--cccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEec
Confidence 223345555554332 223445668899999999999999999999999999887655432211 1123349999999
Q ss_pred hHHHHHHHHHHHHhhhhcCcEEEecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCc
Q 013850 243 PMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLG 322 (435)
Q Consensus 243 ~l~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~ 322 (435)
|++|.+++...++.++..|+++++.+.+++..+++.++++++|++.++|+++..|++.......++++||.+++||++++
T Consensus 231 p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gGe~l~ 310 (536)
T 3ni2_A 231 PMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLG 310 (536)
T ss_dssp CTTSHHHHHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCCTTCCEEEEESSCCC
T ss_pred ChHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCCCccceEEEECCCCCC
Confidence 99999999767899999999999999999999999999999999999999999999988777888999999999999999
Q ss_pred HHHHHHHHhhCCCCeeecCcCcccccccccccC---CCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCC
Q 013850 323 KELMEDCQKNIPGATIFQGYGMTETCAPISLEN---PLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGP 399 (435)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~---~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~ 399 (435)
+++.+++++.|+++++++.||+||++++++... ......+.+++|+|+++++++|+|++++++++.|+.|||+++|+
T Consensus 311 ~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~ 390 (536)
T 3ni2_A 311 KELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGD 390 (536)
T ss_dssp HHHHHHHHHHCTTSEEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTCCEEEEEEST
T ss_pred HHHHHHHHHHCCCCCccccccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCccEEEEeCc
Confidence 999999999998799999999999987655431 12224567899999999999999988999999999999999999
Q ss_pred CccccccccCCcccccccccccccCcceecCCCCC
Q 013850 400 NVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT 434 (435)
Q Consensus 400 ~~~~g~~y~~~~~~~~~~~~~~~~~~~~~tgD~~~ 434 (435)
+++.| ||++|+.|.+.| ..++||+|||+++
T Consensus 391 ~v~~G--Y~~~p~~t~~~~---~~~g~~~TGDl~~ 420 (536)
T 3ni2_A 391 QIMKG--YLNDPEATSRTI---DKEGWLHTGDIGY 420 (536)
T ss_dssp TSCSE--ETTCHHHHHHHB---CTTSCEEEEEEEE
T ss_pred ccchh--hcCChhHHHhhc---cCCCceEcccEEE
Confidence 99999 999999999877 3578999999874
No 2
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=1.4e-63 Score=494.61 Aligned_cols=410 Identities=25% Similarity=0.345 Sum_probs=337.7
Q ss_pred ccCccceeecCCCCCCCCCCCCCchHH-HHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEE
Q 013850 5 GYGRDGIYRSLRPPLVLPSDPSFSMVH-FLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVL 83 (435)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~tl~~-~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~ 83 (435)
..+.++++++..+....|.. .|+.+ +|.++++++ +++|+++...++.+||+||.++++++|+.|++.|+++||+|+
T Consensus 5 ~~~~~~~~~~~~~~~~~p~~--~~l~~~~l~~~~~~~-~~~A~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~ 81 (548)
T 2d1s_A 5 ENDENIVVGPKPFYPIEEGS--AGTQLRKYMERYAKL-GAIAFTNAVTGVDYSYAEYLEKSCCLGKALQNYGLVVDGRIA 81 (548)
T ss_dssp --CTTSEECCCCSSCCCSSC--HHHHHHHHHHHHHHH-TCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEE
T ss_pred CCCcceEecCCCCCCCCCCc--CcHHHHHHHhhhccc-CCceEEEcCCCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence 34566788888776666654 79999 899999999 999999854468999999999999999999999999999999
Q ss_pred EEcCCCCcHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcC-----CCcEEeccCCcccc
Q 013850 84 IFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----LPAVLLGSKDKVSS 158 (435)
Q Consensus 84 l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 158 (435)
|+++|++++++++|||+++|++++|+++.++.+++.++++.++++++|+++.....+.... ...++.... .
T Consensus 82 i~~~n~~e~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--- 157 (548)
T 2d1s_A 82 LCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDS-K--- 157 (548)
T ss_dssp EECSSCTTTHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTTCCEEEETTC-S---
T ss_pred EEeCCchhHHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCCCCEEEEeCC-c---
Confidence 9999999999999999999999999999999999999999999999999988766554321 122222211 0
Q ss_pred cccccccccccchhhhhhhcCCCCCCCCCCCC-----C-CCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhh-hc
Q 013850 159 SGLISRSSKIVSFHDLIELSGSVTDIPDVSVK-----Q-TDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQE-LV 231 (435)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~-~~ 231 (435)
........++++...... ...+..... + +++++|+|||||||.||+|.++|+++.+.......... +.
T Consensus 158 ----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~ 232 (548)
T 2d1s_A 158 ----VDYRGYQCLDTFIKRNTP-PGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQ 232 (548)
T ss_dssp ----SCBTTBCBHHHHHHHTSC-TTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCC
T ss_pred ----ccccccccHHHHHhcCcc-ccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccC
Confidence 000123345555544321 101111222 4 89999999999999999999999999887665443311 11
Q ss_pred cCCCcEEEecchHHHHHHHHHHHHhhhhcCcEEEecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcce
Q 013850 232 GELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSL 311 (435)
Q Consensus 232 ~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~l 311 (435)
...+|++++.+|++|.+++...++.++ .|+++++.+.+++..+++.++++++|++.++|+++..|.+.......++++|
T Consensus 233 ~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~l 311 (548)
T 2d1s_A 233 VSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNL 311 (548)
T ss_dssp CCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTC
T ss_pred CCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccce
Confidence 223499999999999999975577777 9999999999999999999999999999999999999998876666788999
Q ss_pred eEEEecCCCCcHHHHHHHHhhCCCCeeecCcCcccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCc
Q 013850 312 KLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQL 391 (435)
Q Consensus 312 r~i~~gG~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~ 391 (435)
|.+++||+++++++.+++++.|+++++++.||+||++..+...... ..+.+++|+|+++++++|+|+++++++++|+.
T Consensus 312 r~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~--~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~ 389 (548)
T 2d1s_A 312 VEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEG--DDKPGASGKVVPLFKAKVIDLDTKKSLGPNRR 389 (548)
T ss_dssp CEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTT--CCCTTCCBEECTTCEEEEECTTTCCBCCTTCC
T ss_pred eEEEEcCccCCHHHHHHHHHHcCCCceeeccccccccceeeecCcc--cCCCCCCCccCCCceEEEEeCCcCccCCCCCC
Confidence 9999999999999999999999779999999999998776654322 45678999999999999999889999999999
Q ss_pred eeEEEeCCCccccccccCCcccccccccccccCcceecCCCCC
Q 013850 392 GEIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT 434 (435)
Q Consensus 392 Gei~v~g~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~tgD~~~ 434 (435)
|||+++|++++.| ||++|+.|.+.| ..++||+|||+++
T Consensus 390 GEl~v~g~~v~~G--Y~~~~~~t~~~f---~~~g~~~TGDl~~ 427 (548)
T 2d1s_A 390 GEVCVKGPMLMKG--YVNNPEATKELI---DEEGWLHTGDIGY 427 (548)
T ss_dssp EEEEEESTTSCSE--ETTCHHHHHHHB---CTTSCEEEEEEEE
T ss_pred eEEEECCHHHhhh--hcCChHHhhhcc---cCCcEEEccCEEE
Confidence 9999999999999 999999999877 3578999999874
No 3
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=1.8e-63 Score=494.46 Aligned_cols=407 Identities=27% Similarity=0.393 Sum_probs=333.1
Q ss_pred cceeecCCCCCCCCCCCCCchHHHHHhhcccCCCceeee---ecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEE
Q 013850 9 DGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALI---DADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIF 85 (435)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~tl~~~l~~~~~~~p~~~a~~---~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~ 85 (435)
..++..+.+....+. .|+.++|.++++++|+++|++ +...++.+||+||.++++++|+.|+++|+++||+|+|+
T Consensus 5 ~~~~~~~~~~~~~~~---~tl~~~l~~~a~~~p~~~a~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~ 81 (550)
T 3rix_A 5 KNIKKGPAPFYPLED---GTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVC 81 (550)
T ss_dssp GGSEECCCCSSCCCC---SCHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEE
T ss_pred cceeeCCCCCCCccc---CCHHHHHHHHHHhCCCCceEEEeeecCCCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEE
Confidence 445555555555554 699999999999999999976 54446899999999999999999999999999999999
Q ss_pred cCCCCcHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcC-----CCcEEeccCCcccccc
Q 013850 86 APNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----LPAVLLGSKDKVSSSG 160 (435)
Q Consensus 86 ~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 160 (435)
++|++++++++|||+++|++++|+++.++.+++.++++.++++++|++++....+.... ...+++....
T Consensus 82 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 155 (550)
T 3rix_A 82 SENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSK------ 155 (550)
T ss_dssp CSSCTTTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCS------
T ss_pred cCCcccHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCCcceEEEEcCC------
Confidence 99999999999999999999999999999999999999999999999998776654432 2223322221
Q ss_pred cccccccccchhhhhhhcCCCC----CC-CCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhh-hccCC
Q 013850 161 LISRSSKIVSFHDLIELSGSVT----DI-PDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQE-LVGEL 234 (435)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~-~~~~~ 234 (435)
.......++.++........ .. +.....++++++|+|||||||.||+|.++|+++............ .....
T Consensus 156 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~ 233 (550)
T 3rix_A 156 --TDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIP 233 (550)
T ss_dssp --SCBTTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCT
T ss_pred --ccccCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCC
Confidence 11223445555554332110 11 122234678999999999999999999999999887655433221 12223
Q ss_pred CcEEEecchHHHHHHHHHHHHhhhhcCcEEEecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEE
Q 013850 235 DHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLV 314 (435)
Q Consensus 235 ~d~~l~~~~l~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i 314 (435)
++++++.+|++|.+++. .++.++..|+++++.+.+++..+++.++++++|++.++|+++..|++.......++++||.+
T Consensus 234 ~~~~l~~~p~~~~~g~~-~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i 312 (550)
T 3rix_A 234 DTAILSVVPFHHGFGMF-TTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEI 312 (550)
T ss_dssp TCEEEECSCTTSHHHHH-HHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCEE
T ss_pred CcEEEEechHHHHHHHH-HHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccccEE
Confidence 49999999999999985 77889999999999999999999999999999999999999999999887777889999999
Q ss_pred EecCCCCcHHHHHHHHhhCCCCeeecCcCcccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeE
Q 013850 315 GSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEI 394 (435)
Q Consensus 315 ~~gG~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei 394 (435)
++||+++++++.+++++.++...+++.||+||+++.+...... ..+.+++|+|+++++++|+|+++++++++|+.|||
T Consensus 313 ~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~--~~~~~~vG~~~~~~~~~i~d~~~~~~~~~g~~GEl 390 (550)
T 3rix_A 313 ASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEG--DDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGEL 390 (550)
T ss_dssp EECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTT--CCCTTEEEEECTTCEEEEECTTTCCBCCTTCCEEE
T ss_pred EEecCCCCHHHHHHHHHHcCCCccccccCcCccccceecCCCC--CCCCCCcccccCCcEEEEEeCCCCcCCCCCCCeEE
Confidence 9999999999999999999845699999999999877766544 55778999999999999999889999999999999
Q ss_pred EEeCCCccccccccCCcccccccccccccCcceecCCCCC
Q 013850 395 WVRGPNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT 434 (435)
Q Consensus 395 ~v~g~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~tgD~~~ 434 (435)
+|+|++++.| ||++|+.|.+.| +.+|||+|||+++
T Consensus 391 ~v~g~~v~~G--Y~~~~~~t~~~~---~~~g~~~TGDl~~ 425 (550)
T 3rix_A 391 CVRGPMIMSG--YVNNPEATNALI---DKDGWLHSGDIAY 425 (550)
T ss_dssp EEESTTSCSE--ETTCHHHHHHHB---CTTSCEEEEEEEE
T ss_pred EEeCCCcchh--hcCChhhhhhhc---CCCCCeecCcEEE
Confidence 9999999999 999999999876 3578999999874
No 4
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=2.9e-63 Score=492.90 Aligned_cols=398 Identities=28% Similarity=0.446 Sum_probs=336.5
Q ss_pred eecCCCCCCCCCCCCCchHHHHHhhcccCCCceeeeecCCC------cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEE
Q 013850 12 YRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSD------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIF 85 (435)
Q Consensus 12 ~~~~~~~~~~~~~~~~tl~~~l~~~~~~~p~~~a~~~~~~~------~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~ 85 (435)
|++..+...+|. .|+.++|.++++++|+++|+++.+.+ +.+||+||.++++++|+.|++.|+++||+|+|+
T Consensus 7 ~~~~~p~~~~~~---~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~ 83 (549)
T 3g7s_A 7 YKIGFPSLYYPK---ISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVC 83 (549)
T ss_dssp SCCCCCCCCCCC---CCTTHHHHHHHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred eccCCCCCCcCC---CCHHHHHHHHHHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 444455555554 79999999999999999999987522 789999999999999999999999999999999
Q ss_pred cCCCCcHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcC----CCcEEeccCCccccccc
Q 013850 86 APNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN----LPAVLLGSKDKVSSSGL 161 (435)
Q Consensus 86 ~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 161 (435)
++|++++++++|||+++|++++|++|.++.+++.++++.++++++|++......+.... ...+++..
T Consensus 84 ~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--------- 154 (549)
T 3g7s_A 84 IPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTGVERVFVVG--------- 154 (549)
T ss_dssp CCSSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSCCCEEEEET---------
T ss_pred CCCCHHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCCCcEEEEeC---------
Confidence 99999999999999999999999999999999999999999999999988776655432 22222221
Q ss_pred ccccccccchhhhhhhcCCCCCCCCCCCCC-CCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEe
Q 013850 162 ISRSSKIVSFHDLIELSGSVTDIPDVSVKQ-TDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLC 240 (435)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~ 240 (435)
.....+.++..... .........+ +++++|+|||||||.||+|.++|+++.+.+........+... |++++
T Consensus 155 ----~~~~~~~~~~~~~~--~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~--d~~~~ 226 (549)
T 3g7s_A 155 ----GEVNSLSEVMDSGS--EDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHM--DTIVG 226 (549)
T ss_dssp ----CSSSCHHHHHHHSC--SCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTT--CEEEC
T ss_pred ----CCCcCHHHHHhcCc--cccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCC--CEEEE
Confidence 12345666655444 2223333444 899999999999999999999999999988776665555333 99999
Q ss_pred cchHHHHHHHHHHHHhhhhcCcEEEecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccC--CCCcceeEEEecC
Q 013850 241 VLPMFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRK--FDISSLKLVGSGA 318 (435)
Q Consensus 241 ~~~l~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~--~~l~~lr~i~~gG 318 (435)
.+|++|.+++. .++.++..|+++++.+.+++..+++.++++++|+++++|+++..|++...... .++++||.+++||
T Consensus 227 ~~p~~~~~~~~-~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg 305 (549)
T 3g7s_A 227 CMPMFHSAEFG-LVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGA 305 (549)
T ss_dssp CSCTTSHHHHH-HHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEES
T ss_pred eCcHHHHHHHH-HHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeCC
Confidence 99999999996 58889999999999999999999999999999999999999999998765544 6789999999999
Q ss_pred CCCcHHHHHHHHhh----CC--CCeeecCcCcccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCce
Q 013850 319 APLGKELMEDCQKN----IP--GATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLG 392 (435)
Q Consensus 319 ~~l~~~~~~~~~~~----~~--~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~G 392 (435)
+++++++.+++.+. ++ ++++++.||+||++.+++...... ..+..++|+|+++++++|+|+++++++++|+.|
T Consensus 306 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~-~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~G 384 (549)
T 3g7s_A 306 WPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLR-LDKSTTQGVPMSDIELKVISLEDGRELGVGESG 384 (549)
T ss_dssp SCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCGGG-GGGTTSCCEECTTCEEEEECSSSCCEECTTCCE
T ss_pred ccCCHHHHHHHHHHHHhhcCCccccccceEeccccchhhhcCCccc-cCcCCCccccCCCCEEEEEeCCCCcCCCCCCce
Confidence 99999999999987 54 389999999999998777654432 356789999999999999998899999999999
Q ss_pred eEEEeCCCccccccccCCcccccccccccccCc--ceecCCCCC
Q 013850 393 EIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDS--FIRGKDQQT 434 (435)
Q Consensus 393 ei~v~g~~~~~g~~y~~~~~~~~~~~~~~~~~~--~~~tgD~~~ 434 (435)
||+|+|++++.| ||++|+.|++.| +.+.+| ||+|||+++
T Consensus 385 El~v~g~~v~~G--Y~~~~~~t~~~f-~~~~~g~~~~~TGDl~~ 425 (549)
T 3g7s_A 385 EIVIRGPNIFKG--YWKREKENQECW-WYDEKGRKFFRTGDVGF 425 (549)
T ss_dssp EEEEESTTSCSE--ETTCTTGGGTSE-EECTTCCEEEEEEEEEE
T ss_pred EEEEECcchhhh--hCCChhhhhhhh-hccCCCCceEccCcEEE
Confidence 999999999999 999999999988 334456 999999874
No 5
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=8.8e-63 Score=482.68 Aligned_cols=389 Identities=19% Similarity=0.196 Sum_probs=312.3
Q ss_pred CCchHHHHHhhcccCCCceeeeecC-----CC--cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHH
Q 013850 26 SFSMVHFLFRNSASYSSKLALIDAD-----SD--ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLG 98 (435)
Q Consensus 26 ~~tl~~~l~~~~~~~p~~~a~~~~~-----~~--~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA 98 (435)
+.|+.++|.++++++|+++|+++.+ ++ +.+||+||.++++++|+.|+++|+ +||+|+|+++|++++++++||
T Consensus 23 ~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~lA 101 (480)
T 3t5a_A 23 VRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFLG 101 (480)
T ss_dssp -CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHHH
T ss_pred cccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHHH
Confidence 4799999999999999999998753 22 789999999999999999999996 999999999999999999999
Q ss_pred HHHcCcEEEecCC---CCCHHHHHHHHHhcCCeEEEEccccHHHHhhcCCCcEEeccCCcccccccccccccccchhhhh
Q 013850 99 VIAIGAIASTANP---VYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLI 175 (435)
Q Consensus 99 ~~~~G~~~v~i~~---~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (435)
|+++|++++|+++ .++.+++.++++.++++++|++......+........... ......++...
T Consensus 102 ~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~ 168 (480)
T 3t5a_A 102 ALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGES-------------PPSIIEVDLLD 168 (480)
T ss_dssp HHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC-------------------CCEEEEGGGSC
T ss_pred HHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhcccccc-------------ccceeEecccc
Confidence 9999999999999 7789999999999999999999988777665432111000 00011111111
Q ss_pred hhcCCCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhcc----CCCcEEEecchHHHHHHHH
Q 013850 176 ELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVG----ELDHVVLCVLPMFHVFGLS 251 (435)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~----~~~d~~l~~~~l~~~~g~~ 251 (435)
.... .........++++++|+|||||||.||+|+++|+++.+.+........... ..++++++.+|++|.+|+.
T Consensus 169 ~~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g~~ 246 (480)
T 3t5a_A 169 LDAP--NGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDMGLV 246 (480)
T ss_dssp TTCC-----CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEECCCTTSTTHHH
T ss_pred cccc--cCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEeCCCcCccHHH
Confidence 1111 223345567899999999999999999999999999988777666555433 1149999999999999987
Q ss_pred HHHHhhhhcCcEEEecCCC----CHHHHHHHHHhcCceEEEecHHHHHHHHhc----ccccCCCCcceeEEEecCCCCcH
Q 013850 252 VILYDQLQKGNCVVSMGKF----DIEMALRAIEKYRVTVWWVVPPIILALAKN----SLVRKFDISSLKLVGSGAAPLGK 323 (435)
Q Consensus 252 ~~~~~~l~~G~~i~~~~~~----~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~----~~~~~~~l~~lr~i~~gG~~l~~ 323 (435)
..++.++..|+++++.+.. ++..+++.++++++| +.++|+++..++.. ......++++||.+++||+++++
T Consensus 247 ~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~ 325 (480)
T 3t5a_A 247 IGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLGNILTILSGSERVQA 325 (480)
T ss_dssp HHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCTTCCEEEECCTTCCH
T ss_pred HHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcccccccchhhhheeeecCCcCCH
Confidence 7789999999999999754 899999999999999 88899988888764 33456678999999999999999
Q ss_pred HHHHHHHhhCC-----CCeeecCcCcccccccccccCCCCC-----------------------CcCCCCcccccCCcEE
Q 013850 324 ELMEDCQKNIP-----GATIFQGYGMTETCAPISLENPLVG-----------------------VRRSGSAGTLVAGVEA 375 (435)
Q Consensus 324 ~~~~~~~~~~~-----~~~~~~~yG~tE~~~~~~~~~~~~~-----------------------~~~~~~~G~~~~~~~~ 375 (435)
++.++|++.++ ++++++.||+||++.+++....... ..+..++|+|++ +++
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~ 404 (480)
T 3t5a_A 326 ATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIV 404 (480)
T ss_dssp HHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEE
T ss_pred HHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEE
Confidence 99999999984 4689999999999987776544321 124468999999 999
Q ss_pred EEEeCCCCccCCCCCceeEEEeCCCccccccccCCccccccccc--------ccccCcceecCCCCC
Q 013850 376 QIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWG--------CEHTDSFIRGKDQQT 434 (435)
Q Consensus 376 ~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~--------~~~~~~~~~tgD~~~ 434 (435)
+|+|++++++++.|++|||+|+|++++.| ||++|+.|++.|. ....++||+|||+++
T Consensus 405 ~ivd~~~g~~~~~g~~GEl~v~g~~v~~G--Y~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~ 469 (480)
T 3t5a_A 405 RIVDSDTCIECPDGTVGEIWVHGDNVANG--YWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGF 469 (480)
T ss_dssp EEEETTTTEECCTTBCEEEEEESTTSCCC--BTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEE
T ss_pred EEEcCCCCcCCCCCCEEEEEEeCCccccc--cccCcchhHHHHhhhhccccCCCCCCCeeeccceee
Confidence 99998779999999999999999999999 9999999999882 112467999999874
No 6
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=2.4e-62 Score=482.63 Aligned_cols=385 Identities=23% Similarity=0.327 Sum_probs=323.1
Q ss_pred CCchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcE
Q 013850 26 SFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI 105 (435)
Q Consensus 26 ~~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~ 105 (435)
..|+.++|.++++++|+++|+++.+....+||+||.++++++|+.|+++|+++||+|+|+++|++++++++|||+++|++
T Consensus 15 ~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 94 (517)
T 3r44_A 15 MKNIGWMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAV 94 (517)
T ss_dssp GGCHHHHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCE
T ss_pred ccCHHHHHHHHHHhCCCCeEEEeCCcCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHHHHHHhCcE
Confidence 38999999999999999999998753459999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcCCCcEEeccCCcccccccccccccccchhhhhhhcCCCCCCC
Q 013850 106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIP 185 (435)
Q Consensus 106 ~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (435)
++|+++.++.+++.++++.++++++|++......+............. ........+.+...... ...+
T Consensus 95 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~--~~~~ 163 (517)
T 3r44_A 95 AVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTV---------TDWIGADSLAERLRSAA--ADEP 163 (517)
T ss_dssp EEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCCTTC---------CEEEEHHHHHHHHHHCC--CCCC
T ss_pred EEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCccEE---------EEccCcccHHHHhhccC--cCCC
Confidence 999999999999999999999999999988776654432100000000 00000122334443333 3344
Q ss_pred CCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhcCcEEE
Q 013850 186 DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV 265 (435)
Q Consensus 186 ~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~~i~ 265 (435)
.....++++++|+|||||||.||+|.++|+++.+..........+.. +|++++.+|++|.+++...++..+ .|++++
T Consensus 164 ~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~--~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v 240 (517)
T 3r44_A 164 AVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRY--RDRLLLPLPMFHVAALTTVIFSAM-RGVTLI 240 (517)
T ss_dssp CCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCT--TCEEEECSCTTSHHHHHHHHHHHH-HTCEEE
T ss_pred CCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCC--CCEEEEeCchHHHHHHHHHHHHHh-cCeEEE
Confidence 55678899999999999999999999999999998777665554433 399999999999999964444444 999999
Q ss_pred ecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCeeecCcCcc
Q 013850 266 SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMT 345 (435)
Q Consensus 266 ~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~yG~t 345 (435)
+.+.+++..+++.++++++|++.++|+++..|.+.......++++||.+++||+++++++.+.+.+. ++++++.||+|
T Consensus 241 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~--~~~~~~~YG~T 318 (517)
T 3r44_A 241 SMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAK--NIEVVQGYALT 318 (517)
T ss_dssp ECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSSCCCHHHHHHHHHT--TCEEEEEEECG
T ss_pred EeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCCCCCHHHHHHHHhc--CCcEEEeeccc
Confidence 9999999999999999999999999999999999877777789999999999999999999999987 59999999999
Q ss_pred cccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCcccccccccccccCc
Q 013850 346 ETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDS 425 (435)
Q Consensus 346 E~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~~~~~~~ 425 (435)
|+++.++.....+...+.+++|+|+++++++|+| +++.+++.| .|||+++|++++.| ||++|+.|.+.| .++
T Consensus 319 E~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g-~GEl~v~g~~v~~G--Y~~~p~~t~~~f----~~g 390 (517)
T 3r44_A 319 ESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRG-DDGVIREHG-EGEVVIKSDILLKE--YWNRPEATRDAF----DNG 390 (517)
T ss_dssp GGTTCEEEECGGGTTTTTTCCBEECTTEEEEEEC-TTSCEESSE-EEEEEEEETTSCSE--ETTCHHHHHHTE----ETT
T ss_pred ccccceeecCCccccccCCCCCcCCCCeEEEEEC-CCCCCCCCC-CeEEEEeCcchhhh--hCCChhhhHhhh----cCC
Confidence 9988776655444356778999999999999999 689999988 89999999999999 999999999988 478
Q ss_pred ceecCCCCC
Q 013850 426 FIRGKDQQT 434 (435)
Q Consensus 426 ~~~tgD~~~ 434 (435)
||+|||+++
T Consensus 391 ~~~TGDl~~ 399 (517)
T 3r44_A 391 WFRTGDIGE 399 (517)
T ss_dssp EEEEEEEEE
T ss_pred CEecceeEE
Confidence 999999874
No 7
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=1.2e-61 Score=511.40 Aligned_cols=415 Identities=36% Similarity=0.568 Sum_probs=345.6
Q ss_pred cceeecCCCCCCCCCCCCCchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCC
Q 013850 9 DGIYRSLRPPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPN 88 (435)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~ 88 (435)
..++++..+...+|.. .|+.++|.++++++|+++|+++.+.++.+||+||.++++++|+.|+++|+++||+|+|+++|
T Consensus 45 ~~~~~~~~~~~~~p~~--~tl~~~l~~~a~~~pd~~Al~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n 122 (979)
T 3tsy_A 45 DVIFRSKLPDIYIPNH--LSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPN 122 (979)
T ss_dssp CCCBCCSSCCCCCCTT--SCHHHHHTTTGGGTTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSS
T ss_pred CceeecCCCCCCCCCC--CCHHHHHHHHHHhCCCCeEEEECCCCcEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCC
Confidence 4567777777777766 89999999999999999999998667899999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcC--CCcEEeccCCcccccccccccc
Q 013850 89 SIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN--LPAVLLGSKDKVSSSGLISRSS 166 (435)
Q Consensus 89 ~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 166 (435)
++++++++|||+++|++++|++|.++.+++.++++.++++++|+++...+.+.... ....++..+... ......
T Consensus 123 s~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 198 (979)
T 3tsy_A 123 CPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNE----SVPIPE 198 (979)
T ss_dssp CHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTSCCEEEECCCCT----TSCCCT
T ss_pred CHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcCCceEEEeCCcc----cccCCc
Confidence 99999999999999999999999999999999999999999999987665444321 112222222110 001122
Q ss_pred cccchhhhhhhcCC-CCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhh--hhccCCCcEEEecch
Q 013850 167 KIVSFHDLIELSGS-VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQ--ELVGELDHVVLCVLP 243 (435)
Q Consensus 167 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~--~~~~~~~d~~l~~~~ 243 (435)
....+.++...... ....+.....++++++|+|||||||.||+|.++|+++.+.+....... .+....+|++++.+|
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p 278 (979)
T 3tsy_A 199 GCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLP 278 (979)
T ss_dssp TEEEGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSC
T ss_pred ccccHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECc
Confidence 33445544432221 012234556889999999999999999999999999988765543321 112233499999999
Q ss_pred HHHHHHHHHHHHhhhhcCcEEEecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcH
Q 013850 244 MFHVFGLSVILYDQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGK 323 (435)
Q Consensus 244 l~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~ 323 (435)
++|.+++...++.++..|+++++.+.+++..+++.++++++|++.++|+++..|.+.......++++||.+++||+++++
T Consensus 279 ~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~l~~ 358 (979)
T 3tsy_A 279 MFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGK 358 (979)
T ss_dssp SSSHHHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCCTTCCEEEESSCCCCS
T ss_pred hHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCCccceEEEEEcCCCCCH
Confidence 99999997678899999999999999999999999999999999999999999999888778889999999999999999
Q ss_pred HHHHHHHhhCCCCeeecCcCcccccccccccC---CCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCC
Q 013850 324 ELMEDCQKNIPGATIFQGYGMTETCAPISLEN---PLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPN 400 (435)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~---~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~ 400 (435)
++.+++++.|+++++++.||+||++.+++... ......+.+++|+|+++++++|+|+++++++++|+.|||+|+|++
T Consensus 359 ~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~g~~ 438 (979)
T 3tsy_A 359 ELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQ 438 (979)
T ss_dssp SHHHHHHHHCTTCEEEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTTCCEEEEEESTT
T ss_pred HHHHHHHHHCCCCeEEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCCCCccEEEEECCC
Confidence 99999999998899999999999987665432 122245678999999999999999889999999999999999999
Q ss_pred ccccccccCCcccccccccccccCcceecCCCCC
Q 013850 401 VTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT 434 (435)
Q Consensus 401 ~~~g~~y~~~~~~~~~~~~~~~~~~~~~tgD~~~ 434 (435)
++.| ||++|+.|.+.| ..++||+|||+++
T Consensus 439 v~~G--Y~~~p~~t~~~f---~~~g~~~TGDl~~ 467 (979)
T 3tsy_A 439 IMKG--YLNNPAATAETI---DKDGWLHTGDIGL 467 (979)
T ss_dssp SCSE--ETTCHHHHHHHB---CTTSCEEEEEEEE
T ss_pred cccc--ccCChhhhhhhc---cCCCcEEcCCEEE
Confidence 9999 999999999977 4578999999874
No 8
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=1e-61 Score=476.55 Aligned_cols=377 Identities=27% Similarity=0.368 Sum_probs=315.8
Q ss_pred HHHHhhcccCCCceeeeec-CCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEec
Q 013850 31 HFLFRNSASYSSKLALIDA-DSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTA 109 (435)
Q Consensus 31 ~~l~~~~~~~p~~~a~~~~-~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i 109 (435)
++|.+.++++|+++|+... ..++++||+||.++++++|+.|+++|+++||+|+|+++|++++++++|||+++|++++|+
T Consensus 4 ~l~~~~a~~~p~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl 83 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPL 83 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEEETTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEEC
T ss_pred hHHHHHHHhCCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEec
Confidence 5678888999999988742 236899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcC----CCcEEeccCCcccccccccccccccchhhhhhhcCCCCCCC
Q 013850 110 NPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN----LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIP 185 (435)
Q Consensus 110 ~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (435)
++.++.+++.++++.++++++|+++.....+.... .....+..+ ....+.+...... ....
T Consensus 84 ~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~--~~~~ 148 (503)
T 4fuq_A 84 NTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPD-------------GRGSLTDAAAGAS--EAFA 148 (503)
T ss_dssp CTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHTCEEEECCTT-------------SCSHHHHHHHTSC--SCCC
T ss_pred CCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcCceEEEecCC-------------cccccchhhhcCC--CCcC
Confidence 99999999999999999999999987654332221 111111111 0011222221111 2333
Q ss_pred CCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhcCcEEE
Q 013850 186 DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV 265 (435)
Q Consensus 186 ~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~~i~ 265 (435)
.....++++++|+|||||||.||+|.++|+++.+........+.+.. +|++++.+|++|.+|+...++.++..|++++
T Consensus 149 ~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~--~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~ 226 (503)
T 4fuq_A 149 TIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTP--DDVLIHALPIYHTHGLFVASNVTLFARGSMI 226 (503)
T ss_dssp CCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCT--TCEEEECSCSSSHCCCCCCHHHHHHTTCEEE
T ss_pred cCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCC--CCEEEEeCChHHHHHHHHHHHHHHHhCCEEE
Confidence 45667899999999999999999999999999998777666555543 3999999999999997656788999999999
Q ss_pred ecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCeeecCcCcc
Q 013850 266 SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMT 345 (435)
Q Consensus 266 ~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~yG~t 345 (435)
+.+.+++..+++.++ ++|++.++|+++..|++........+++||.+++||+++++++.++|.+.++ .++++.||+|
T Consensus 227 ~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~-~~~~~~YG~T 303 (503)
T 4fuq_A 227 FLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKTG-HAVLERYGMT 303 (503)
T ss_dssp ECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTCSTTTTTTCCEEEECSSCCCHHHHHHHHHHHS-CCEEECCEET
T ss_pred EcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCccccchhhcEEEEECCCCCCHHHHHHHHHHhC-CCccceEccc
Confidence 999999999999998 8999999999999999988777778899999999999999999999999987 9999999999
Q ss_pred cccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCcccccccccccccCc
Q 013850 346 ETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDS 425 (435)
Q Consensus 346 E~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~~~~~~~ 425 (435)
|++....... +.....+++|+|+++++++|+|+++++++++|+.|||+++|++++.| ||++|+.|.+.| ..++
T Consensus 304 E~~~~~~~~~--~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~G--Y~~~~~~t~~~f---~~~g 376 (503)
T 4fuq_A 304 ETNMNTSNPY--DGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFKG--YWRMPEKTKSEF---RDDG 376 (503)
T ss_dssp TTEECBCCCS--SSCCCTTEEEEBCTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCCC--BTTCHHHHHHTB---CTTS
T ss_pred ccCcccccCC--CCCCcCCccccCCCCeEEEEEECCCCCCCcCCCceEEEEECCchhhh--hcCChhhhHhhh---CCCC
Confidence 9987654332 22566789999999999999998899999999999999999999999 999999999987 3578
Q ss_pred ceecCCCCC
Q 013850 426 FIRGKDQQT 434 (435)
Q Consensus 426 ~~~tgD~~~ 434 (435)
||+|||+++
T Consensus 377 ~~~TGDl~~ 385 (503)
T 4fuq_A 377 FFITGDLGK 385 (503)
T ss_dssp CEEEEEEEE
T ss_pred CeEcceeEE
Confidence 999999874
No 9
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=1.3e-61 Score=480.28 Aligned_cols=384 Identities=22% Similarity=0.292 Sum_probs=320.7
Q ss_pred CchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEE
Q 013850 27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106 (435)
Q Consensus 27 ~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~ 106 (435)
.|+.++|.++++++|+++|+++. ++.+||+||.++++++|+.|+++|+++||+|+|+++|++++++++|||+++|+++
T Consensus 30 ~tl~~~l~~~a~~~p~~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~Gav~ 107 (544)
T 3o83_A 30 QPLTRILTVGVQSHPHSLAIICG--ERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVV 107 (544)
T ss_dssp CCTTHHHHHHHHHCTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEE
T ss_pred CCHHHHHHHHHHhCCCceEEEcC--CCceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEE
Confidence 79999999999999999999987 5899999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHHHHHhcCCeEEEEccccH--------HHHhhcC--CCcEEeccCCcccccccccccccccchhhhhh
Q 013850 107 STANPVYTVSELSKQVKDSNPKLVITVPELW--------DKVKDLN--LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIE 176 (435)
Q Consensus 107 v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~--------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (435)
+|+++.++.+++.++++.++++++|++.... ..+.... ...++..... .....+.++..
T Consensus 108 vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~ 176 (544)
T 3o83_A 108 LNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQ-----------ATDFGLLDWIE 176 (544)
T ss_dssp EECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCC-----------TTSEEHHHHHH
T ss_pred ecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCC-----------ccccchhhhhh
Confidence 9999999999999999999999999987543 2222221 1222222110 01112333333
Q ss_pred hcCCCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHH-HHH
Q 013850 177 LSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV-ILY 255 (435)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~-~~~ 255 (435)
.... .........++++++|+|||||||.||+|.++|+++.+.+........+.. +|++++.+|++|.+++.. .++
T Consensus 177 ~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~--~d~~l~~~p~~h~~~~~~~~~~ 253 (544)
T 3o83_A 177 TPAE-TFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNS--NTRLLCALPAPHNFMLSSPGAL 253 (544)
T ss_dssp SCCS-SCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCT--TCEEEECSCTTSHHHHHSSHHH
T ss_pred cccc-cccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCC--CCeEEEecCcceEeecchHHHH
Confidence 2221 122224567899999999999999999999999999998877666555533 399999999999998864 488
Q ss_pred hhhhcCcEEEecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCC
Q 013850 256 DQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPG 335 (435)
Q Consensus 256 ~~l~~G~~i~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~ 335 (435)
.++..|+++++.+.+++..+++.++++++|++.++|+++..|++.......++++||.+++||+++++++.+++++.++
T Consensus 254 ~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~- 332 (544)
T 3o83_A 254 GVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEVLN- 332 (544)
T ss_dssp HHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSCCCHHHHTHHHHHHC-
T ss_pred HHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCCCCCHHHHHHHHHHhC-
Confidence 9999999999999999999999999999999999999999999887766667899999999999999999999999996
Q ss_pred CeeecCcCcccccccccccCCCCCCcCCCCccccc-CCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCcccc
Q 013850 336 ATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLV-AGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFT 414 (435)
Q Consensus 336 ~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~ 414 (435)
+++++.||+||++....... ........++|+|+ ++++++|+| ++++++++|++|||+++||+++.| ||++|+.|
T Consensus 333 ~~~~~~YG~TE~~~~~~~~~-~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~G--Y~~~~~~t 408 (544)
T 3o83_A 333 CKLQQVFGMAEGLVNYTRLD-DSDEQIFTTQGRPISSDDEIKIVD-EQYREVPEGEIGMLATRGPYTFCG--YYQSPEHN 408 (544)
T ss_dssp SEEEEEEECTTSCEEECCTT-SCHHHHHHCCCEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSC--CTTCHHHH
T ss_pred CcEEeeeccccccceeecCC-CchhhccCCCceecCCCcEEEEEC-CCCCCCCCCCeeEEEEecCCcchh--hcCChhhh
Confidence 99999999999875443322 21133457899996 899999999 799999999999999999999999 99999999
Q ss_pred cccccccccCcceecCCCCC
Q 013850 415 LFLWGCEHTDSFIRGKDQQT 434 (435)
Q Consensus 415 ~~~~~~~~~~~~~~tgD~~~ 434 (435)
.+.| ..++||+|||+++
T Consensus 409 ~~~f---~~~g~~~TGDlg~ 425 (544)
T 3o83_A 409 SQVF---DEDNYYYSGDLVQ 425 (544)
T ss_dssp HHHB---CTTCCEEEEEEEE
T ss_pred hhhC---CCCCCeEcCCEEE
Confidence 9987 3578999999874
No 10
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=1.6e-61 Score=476.84 Aligned_cols=380 Identities=18% Similarity=0.234 Sum_probs=319.5
Q ss_pred CchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEE
Q 013850 27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106 (435)
Q Consensus 27 ~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~ 106 (435)
+|+.++|.++++++|+++|+++.+ +++||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|+++
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~~~--~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G~v~ 78 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVWRD--AKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAY 78 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEETT--EEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTTCCE
T ss_pred CcHHHHHHHHHHHCCCceEEEeCC--ceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEE
Confidence 579999999999999999999874 899999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcCCCcEEeccCCcccccccccccccccchhhhhhhcCCCCCCCC
Q 013850 107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPD 186 (435)
Q Consensus 107 v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (435)
+|+++.++.+++.++++.++++++|++...... .....++.. ..+.++..........+.
T Consensus 79 vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~----~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~ 138 (512)
T 3fce_A 79 IPVDLSIPADRVQRIAENSGAKLLLSATAVTVT----DLPVRIVSE----------------DNLKDIFFTHKGNTPNPE 138 (512)
T ss_dssp EEEETTSCHHHHHHHHHHSCCCEEEESSCCCSS----CCSSEEEET----------------HHHHHHHHHTTTCCCCGG
T ss_pred EeeCCCCcHHHHHHHHHhcCCCEEEecCccccc----ccccceech----------------hhhhhhcccccccCCCcc
Confidence 999999999999999999999999997543210 001111110 112222222221122234
Q ss_pred CCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhcCcEEEe
Q 013850 187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS 266 (435)
Q Consensus 187 ~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~~i~~ 266 (435)
....++++++|+|||||||.||+|.++|+++.+..........+.. +|++++.+|++|..++. .++.++..|+++++
T Consensus 139 ~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~--~d~~l~~~p~~~~~~~~-~~~~~l~~G~~~~~ 215 (512)
T 3fce_A 139 HAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQT--GQVFLNQAPFSFDLSVM-DIYPSLVTGGTLWA 215 (512)
T ss_dssp GSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCS--SCEEEECSCTTSGGGHH-HHHHHHHTTCEEEE
T ss_pred ccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCC--CCEEEEeCCccHhHHHH-HHHHHHhCCCEEEE
Confidence 5567899999999999999999999999999998777666555533 39999999999999985 78999999999999
Q ss_pred cCC---CCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCeeecCcC
Q 013850 267 MGK---FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYG 343 (435)
Q Consensus 267 ~~~---~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~yG 343 (435)
.+. +++..+++.++++++|++.++|+++..++.........+++||.+++||+++++++.+++.+.|+++++++.||
T Consensus 216 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG 295 (512)
T 3fce_A 216 IDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYG 295 (512)
T ss_dssp CCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEEC
T ss_pred CCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcc
Confidence 976 68999999999999999999999999999888777788999999999999999999999999998799999999
Q ss_pred cccccccccccCCCCC---CcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCcccccccccc
Q 013850 344 MTETCAPISLENPLVG---VRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGC 420 (435)
Q Consensus 344 ~tE~~~~~~~~~~~~~---~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~~ 420 (435)
+||+++.++....... ..+..++|+|+++++++|+| ++++++++|+.|||+++||+++.| ||++|+.|.+.|..
T Consensus 296 ~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~G--Y~~~~~~t~~~f~~ 372 (512)
T 3fce_A 296 PTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMK-EDGTIAPDGEKGEIVIVGPSVSVG--YLGSPELTEKAFTM 372 (512)
T ss_dssp CGGGSSCSEEEECCHHHHHHCSSCCCEEECTTCEEEEEC-SSSCBCCTTSCEEEEEESTTSCSC--BTTCHHHHHHHEEE
T ss_pred cChhhhheeeEEeccccccccCCCccccccCCcEEEEEC-CCCCCCCCCCeEEEEEeccccChh--hcCCchhhhhcccc
Confidence 9999887664332211 23567899999999999999 689999999999999999999999 99999999998854
Q ss_pred cccCcceecCCCCC
Q 013850 421 EHTDSFIRGKDQQT 434 (435)
Q Consensus 421 ~~~~~~~~tgD~~~ 434 (435)
.+.++||+|||+++
T Consensus 373 ~~~~~~~~TGDlg~ 386 (512)
T 3fce_A 373 IDGERAYKTGDAGY 386 (512)
T ss_dssp ETTEEEEEEEEEEE
T ss_pred CCCCEEEeCCceEE
Confidence 55678999999864
No 11
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=4.9e-61 Score=478.60 Aligned_cols=392 Identities=22% Similarity=0.282 Sum_probs=322.0
Q ss_pred CCCCCCCCCchH-HHHHhhcccCCCceeeeecC---CCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHH
Q 013850 19 LVLPSDPSFSMV-HFLFRNSASYSSKLALIDAD---SDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPI 94 (435)
Q Consensus 19 ~~~~~~~~~tl~-~~l~~~~~~~p~~~a~~~~~---~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~ 94 (435)
...|.. +|+. ++|.++++++|+++|++..+ .++.+||+||.++++++|+.|+++|+++||+|+|+++|++++++
T Consensus 49 ~~~~~~--~n~~~~~l~~~a~~~pd~~Al~~~~~~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~ 126 (580)
T 3etc_A 49 ILVPEN--FNFAYDVVDVYARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWY 126 (580)
T ss_dssp BCCCSS--CCHHHHTHHHHHHHCTTCEEEEEEESSSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHH
T ss_pred CCCccc--chHHHHHHHHHHhhCCCCEEEEEEcCCCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHH
Confidence 344544 7777 99999999999999998632 23689999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCeEEEEccccH--HHHhhc----C-C-CcEEeccCCcccccccccccc
Q 013850 95 CFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELW--DKVKDL----N-L-PAVLLGSKDKVSSSGLISRSS 166 (435)
Q Consensus 95 ~~lA~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~--~~~~~~----~-~-~~~~~~~~~~~~~~~~~~~~~ 166 (435)
++|||+++|++++|+++.++.+++.++++.++++++|++.+.. ..+... . . ..++.... ....
T Consensus 127 ~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~ 197 (580)
T 3etc_A 127 CMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGG---------DVLE 197 (580)
T ss_dssp HHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESS---------SCCT
T ss_pred HHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCC---------cccc
Confidence 9999999999999999999999999999999999999987654 333222 1 1 12222211 1233
Q ss_pred cccchhhhhhhcCCCCCCCC--CCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchH
Q 013850 167 KIVSFHDLIELSGSVTDIPD--VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPM 244 (435)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l 244 (435)
.+..+.+.+.........+. ....++++++|+|||||||.||+|.++|.++............+ ..++++++..|+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 275 (580)
T 3etc_A 198 GWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNV--EDDGLHYTVADS 275 (580)
T ss_dssp TCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCC--CTTCEEEECCCT
T ss_pred ccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCC--CCCceEEEeCCh
Confidence 45566666655442111111 35678999999999999999999999999887765443222222 333999999999
Q ss_pred HHHHHHHHHHHhhhhcCcEEEec--CCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCc
Q 013850 245 FHVFGLSVILYDQLQKGNCVVSM--GKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLG 322 (435)
Q Consensus 245 ~~~~g~~~~~~~~l~~G~~i~~~--~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~ 322 (435)
+|..+.+..++.++..|+++++. ..+++..+++.++++++|+++++|+++..|.+. .....++++||.+++||++++
T Consensus 276 ~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~-~~~~~~l~~lr~i~~gGe~l~ 354 (580)
T 3etc_A 276 GWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKE-DLSHYNFSTLKYAVVAGEPLN 354 (580)
T ss_dssp TSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTS-CC---CCTTCCEEEECSSCCC
T ss_pred HHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhc-ccccCCCccceEEEEccCCCC
Confidence 99988876688899999999987 578999999999999999999999999999886 344567899999999999999
Q ss_pred HHHHHHHHhhCCCCeeecCcCcccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeC----
Q 013850 323 KELMEDCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRG---- 398 (435)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g---- 398 (435)
+++.++|++.++ +++++.||+||++..++..... ..+.+++|+|+++++++|+| ++|+++++|+.|||+++|
T Consensus 355 ~~~~~~~~~~~g-~~i~~~YG~TE~~~~~~~~~~~--~~~~~~~G~p~~~~~v~ivd-~~g~~~~~g~~GEl~v~~~~g~ 430 (580)
T 3etc_A 355 PEVFNRFLEFTG-IKLMEGFGQTETVVTIATFPWM--EPKPGSIGKPTPGYKIELMD-RDGRLCEVGEEGEIVINTMEGK 430 (580)
T ss_dssp HHHHHHHHHHHS-CCCEEEECCTTSSCCEECCTTS--CCCTTCCBEECTTCEEEEEC-TTSCBCCTTCCEEEEEECTTCC
T ss_pred HHHHHHHHHHhC-CeEecccccccccceeecCCCC--CCCCCccccCCCCCEEEEEC-CCCCCCCCCCceEEEEecCCCC
Confidence 999999999886 9999999999998766654433 56788999999999999999 579999999999999997
Q ss_pred -CCccccccccCCcccccccccccccCcceecCCCCC
Q 013850 399 -PNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT 434 (435)
Q Consensus 399 -~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~tgD~~~ 434 (435)
++++.| ||++|+.|.+.| .+|||+|||+++
T Consensus 431 ~~~~~~g--Y~~~p~~t~~~f----~~gwy~TGDlg~ 461 (580)
T 3etc_A 431 PVGLFVH--YGKDPERTEETW----HDGYYHTGDMAW 461 (580)
T ss_dssp CTTCCCE--ETTCHHHHHHHE----ETTEEEEEEEEE
T ss_pred CCeeecc--ccCCHhHHHhhc----CCCEEecCcEEE
Confidence 789999 999999999988 478999999874
No 12
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=3.2e-61 Score=476.99 Aligned_cols=380 Identities=23% Similarity=0.288 Sum_probs=317.2
Q ss_pred CchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEE
Q 013850 27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106 (435)
Q Consensus 27 ~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~ 106 (435)
.|+.++|.++++++|+++|+++. ++.+||+||.++++++|+.|+++|+++||+|+|+++|++++++++|||+++|+++
T Consensus 25 ~tl~~~l~~~a~~~p~~~A~~~~--~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~ 102 (539)
T 1mdb_A 25 ETFGDLLRDRAAKYGDRIAITCG--NTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALP 102 (539)
T ss_dssp CCHHHHHHHHHHHHTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEE
T ss_pred CCHHHHHHHHHHHCCCCEEEEeC--CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCeEE
Confidence 68999999999999999999987 4899999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHHHHHhcCCeEEEEccccH--------HHHhhc-C-CCcEEeccCCcccccccccccccccchhhhhh
Q 013850 107 STANPVYTVSELSKQVKDSNPKLVITVPELW--------DKVKDL-N-LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIE 176 (435)
Q Consensus 107 v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~--------~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (435)
+|++|.++.+++.++++.++++++|+++... ..+... . .+.+++..+. ..+.++..
T Consensus 103 vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~ 168 (539)
T 1mdb_A 103 VFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEA--------------EEFLPLED 168 (539)
T ss_dssp EECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCC--------------TTSEEGGG
T ss_pred ecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCc--------------cchhhhhh
Confidence 9999999999999999999999999987532 122111 1 2222222110 01222222
Q ss_pred hcCCCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHH-HHH
Q 013850 177 LSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV-ILY 255 (435)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~-~~~ 255 (435)
... .........++++++|+|||||||.||+|.++|+++.+..........+.. +|++++.+|++|.+++.. .++
T Consensus 169 ~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~--~d~~l~~~p~~h~~~~~~~~~~ 244 (539)
T 1mdb_A 169 LHT--EPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDH--STVYLAALPMAHNYPLSSPGVL 244 (539)
T ss_dssp CCC--CCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCT--TCEEEECSCTTSHHHHHSSHHH
T ss_pred ccc--cccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCC--CCEEEEeecccccchhhHHHHH
Confidence 111 111234567899999999999999999999999999988776655554433 399999999999999864 588
Q ss_pred hhhhcCcEEEecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCC
Q 013850 256 DQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPG 335 (435)
Q Consensus 256 ~~l~~G~~i~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~ 335 (435)
.++..|+++++.+.+++..+++.++++++|++.++|+++..|++.......++++||.+++||+++++++.+++++.++
T Consensus 245 ~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~- 323 (539)
T 1mdb_A 245 GVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVFG- 323 (539)
T ss_dssp HHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHTC-
T ss_pred HHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCCCCHHHHHHHHHHhC-
Confidence 9999999999999999999999999999999999999999999877666778999999999999999999999999996
Q ss_pred CeeecCcCcccccccccccCCCCCCcCCCCcccccCC-cEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCcccc
Q 013850 336 ATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAG-VEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFT 414 (435)
Q Consensus 336 ~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~-~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~ 414 (435)
+++++.||+||++.... ..........+++|+|+++ .+++|+| ++++++++|+.|||+++||+++.| ||++|+.|
T Consensus 324 ~~~~~~YG~TE~~~~~~-~~~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~G--Y~~~~~~t 399 (539)
T 1mdb_A 324 CTLQQVFGMAEGLVNYT-RLDDPEEIIVNTQGKPMSPYDESRVWD-DHDRDVKPGETGHLLTRGPYTIRG--YYKAEEHN 399 (539)
T ss_dssp SEEEEEEECTTSCEEEC-CTTSCHHHHHHCCCEESSTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSS--CTTCHHHH
T ss_pred CcEEEEEcCCCCccccc-CCCCcHHhcCCCCCcccCCCceEEEEC-CCCCCCcCCCcceEEeeCcccchh--hcCChhhh
Confidence 99999999999653332 2211112345789999976 5899999 689999999999999999999999 99999999
Q ss_pred cccccccccCcceecCCCCC
Q 013850 415 LFLWGCEHTDSFIRGKDQQT 434 (435)
Q Consensus 415 ~~~~~~~~~~~~~~tgD~~~ 434 (435)
.+.| ..+|||+|||+++
T Consensus 400 ~~~f---~~~g~~~TGDlg~ 416 (539)
T 1mdb_A 400 AASF---TEDGFYRTGDIVR 416 (539)
T ss_dssp HHHB---CTTSCEEEEEEEE
T ss_pred hhhc---cCCCCeecCceEE
Confidence 9987 2578999999874
No 13
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=1.6e-60 Score=468.67 Aligned_cols=375 Identities=22% Similarity=0.290 Sum_probs=311.4
Q ss_pred CchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEE
Q 013850 27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106 (435)
Q Consensus 27 ~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~ 106 (435)
.|+.++|.++++++|+++|+++.+.++.+||+||.++++++|+.|+++|+++||+|+|+++|++++++++|||+++|+++
T Consensus 2 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~ 81 (504)
T 1t5h_X 2 QTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVP 81 (504)
T ss_dssp CCHHHHHHHHHHHCTTSEEEEETTTTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEE
T ss_pred CcHHHHHHHHHHhCCCceEEEEcCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCcEE
Confidence 47899999999999999999987545899999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHHHHHhcCCeEEEE--ccccHHHH-hhcCCCcEEeccCCcccccccccccccccchhhhhhhcC---C
Q 013850 107 STANPVYTVSELSKQVKDSNPKLVIT--VPELWDKV-KDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSG---S 180 (435)
Q Consensus 107 v~i~~~~~~~~~~~~l~~~~~~~vi~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 180 (435)
+|+++.++.+++.++++.++++++|+ +......+ .... ...++ .++++..... .
T Consensus 82 vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~-------------------~~~~~~~~~~~~~~ 141 (504)
T 1t5h_X 82 ALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGS-GARII-------------------FLGDLVRDGEPYSY 141 (504)
T ss_dssp EEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHCC-CCEEE-------------------EGGGTEETTEECCC
T ss_pred EecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhccc-cceeE-------------------EecchhhcCccccc
Confidence 99999999999999999999999999 77665554 3221 11111 1222221110 0
Q ss_pred CCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhc
Q 013850 181 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQK 260 (435)
Q Consensus 181 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~ 260 (435)
..........++++++|+|||||||.||+|.++|+++.+..........+.....+++++.+|++|.+++...++.++..
T Consensus 142 ~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~ 221 (504)
T 1t5h_X 142 GPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALAL 221 (504)
T ss_dssp SCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHT
T ss_pred CCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcchHHHHHHHHHHc
Confidence 01111244578999999999999999999999999999887766554444223449999999999999986578899999
Q ss_pred CcEEEecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhccc--ccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCee
Q 013850 261 GNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSL--VRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATI 338 (435)
Q Consensus 261 G~~i~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~ 338 (435)
|+++++.+.+++..+++.++++++|++.++|+++..|.+... ....++++||.+++||+++++++.++|++.++ .++
T Consensus 222 G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~-~~~ 300 (504)
T 1t5h_X 222 DGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLP-GEK 300 (504)
T ss_dssp TCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCHHHHHHHHHHCC-SEE
T ss_pred CceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCHHHHHHHHHhcC-cce
Confidence 999999999999999999999999999999999999998752 24457899999999999999999999999997 999
Q ss_pred ecCcCcccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCC---ccCCCCCceeEEEe-CCCccccccccCCcccc
Q 013850 339 FQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTL---KPLPPNQLGEIWVR-GPNVTPGIVYINFFVFT 414 (435)
Q Consensus 339 ~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~---~~~~~g~~Gei~v~-g~~~~~g~~y~~~~~~~ 414 (435)
++.||+||++. ..... ..+.+++|.|.++++++|+|. ++ +++++|+.|||+++ |++++.| ||++|+.|
T Consensus 301 ~~~YG~TE~~~-~~~~~----~~~~~~~g~p~~~~~~~i~~~-~~~~~~~~~~g~~GEl~v~gg~~~~~G--Y~~~~~~t 372 (504)
T 1t5h_X 301 VNIYGTTEAMN-SLYMR----QPKTGTEMAPGFFSEVRIVRI-GGGVDEIVANGEEGELIVAASDSAFVG--YLNQPQAT 372 (504)
T ss_dssp EEEEEETTTEE-EEEEE----SCSSSSEEBCCTTCCEEEECT-TSCTTCBCCTTCCEEEEEECCTTSCCC--BTTCHHHH
T ss_pred eeeeccccccc-ccccc----CCCCCccccCCCCCceeEEec-cCCCCCcCCCCCcceEEEeCCceeece--ecCCchhh
Confidence 99999999832 22221 345678999999999999995 55 89999999999999 9999999 99999999
Q ss_pred cccccccccCcceecCCCCC
Q 013850 415 LFLWGCEHTDSFIRGKDQQT 434 (435)
Q Consensus 415 ~~~~~~~~~~~~~~tgD~~~ 434 (435)
.+.| .+|||+|||+++
T Consensus 373 ~~~f----~~g~~~TGDlg~ 388 (504)
T 1t5h_X 373 AEKL----QDGWYRTSDVAV 388 (504)
T ss_dssp HHHE----ETTEEEEEEEEE
T ss_pred hhhh----cCCccccCcEEE
Confidence 9988 478999999873
No 14
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=3.4e-60 Score=469.82 Aligned_cols=385 Identities=23% Similarity=0.326 Sum_probs=316.3
Q ss_pred CchHHHHHhhcccCCCceeeeec--CCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCc
Q 013850 27 FSMVHFLFRNSASYSSKLALIDA--DSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGA 104 (435)
Q Consensus 27 ~tl~~~l~~~~~~~p~~~a~~~~--~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~ 104 (435)
.|+.++|.++++++|+++|++.. +.++.+||+||.++++++|+.|+++|+++||+|+|+++|++++++++|||+++|+
T Consensus 18 ~~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Ga 97 (541)
T 1v25_A 18 LNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGA 97 (541)
T ss_dssp CCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHhCCCceEEEEecCCCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCc
Confidence 68999999999999999999852 2247899999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcC-----CCcEEeccCCcccccccccccccccchhhhhhhcC
Q 013850 105 IASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSG 179 (435)
Q Consensus 105 ~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (435)
+++|+++.++.+++.++++.++++++|++++....+.... .+.+++.... .......+++++....
T Consensus 98 v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~ 168 (541)
T 1v25_A 98 VLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEK---------APEGYLAYEEALGEEA 168 (541)
T ss_dssp EEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSC---------CCTTCEEHHHHCCSCC
T ss_pred EEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCCccEEEEecCC---------CCcccccHHHHhhccC
Confidence 9999999999999999999999999999988766554432 1122222111 0112234555443222
Q ss_pred CCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhh
Q 013850 180 SVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQ 259 (435)
Q Consensus 180 ~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~ 259 (435)
. .....++++++|+|||||||.||+|.++|+++............+....+|++++.+|++|.+++. .++.++.
T Consensus 169 --~---~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~-~~~~~l~ 242 (541)
T 1v25_A 169 --D---PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWC-LPYAATL 242 (541)
T ss_dssp --C---CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHT-HHHHHHH
T ss_pred --C---cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHHH-HHHHHHh
Confidence 1 134567899999999999999999999999998765432111122223349999999999999984 6788899
Q ss_pred cCcEEEecCC-CCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCee
Q 013850 260 KGNCVVSMGK-FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATI 338 (435)
Q Consensus 260 ~G~~i~~~~~-~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~ 338 (435)
.|+++++.+. +++..+++.++++++|++.++|+++..|++.......++++||.+++||+++++++.++| +.++ +++
T Consensus 243 ~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~-~~~g-~~~ 320 (541)
T 1v25_A 243 VGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARF-ERMG-VEV 320 (541)
T ss_dssp HTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHH-HHTT-CEE
T ss_pred cCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCcchhccEEEECCCCCCHHHHHHH-HHhC-Cce
Confidence 9999999864 699999999999999999999999999998766666678999999999999999999999 6675 999
Q ss_pred ecCcCcccccccccccCCCCC---------CcCCCCcccccCCcEEEEEeCCCCccCCC--CCceeEEEeCCCccccccc
Q 013850 339 FQGYGMTETCAPISLENPLVG---------VRRSGSAGTLVAGVEAQIVSVDTLKPLPP--NQLGEIWVRGPNVTPGIVY 407 (435)
Q Consensus 339 ~~~yG~tE~~~~~~~~~~~~~---------~~~~~~~G~~~~~~~~~i~d~~~~~~~~~--g~~Gei~v~g~~~~~g~~y 407 (435)
++.||+||++.+++....... ....+++|+|+++++++|+| +++++++. ++.|||+++||+++.| |
T Consensus 321 ~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~~~~~~GEl~v~g~~v~~G--Y 397 (541)
T 1v25_A 321 RQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGG--Y 397 (541)
T ss_dssp EEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSS--C
T ss_pred eecccccccccceecccccccccccCccccccccCCCCCcCCCcEEEEEC-CCCCCCCCCCCcceEEEEeCcchhcc--c
Confidence 999999999877665433210 12457899999999999999 57888884 3689999999999999 9
Q ss_pred cCCcccccccccccccCcceecCCCCC
Q 013850 408 INFFVFTLFLWGCEHTDSFIRGKDQQT 434 (435)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~tgD~~~ 434 (435)
|++|+.|.+.| ..+|||+|||+++
T Consensus 398 ~~~p~~t~~~f---~~~g~~~TGDlg~ 421 (541)
T 1v25_A 398 YGNEEATRSAL---TPDGFFRTGDIAV 421 (541)
T ss_dssp BTCHHHHHTTB---CTTSCEEEEEEEE
T ss_pred cCChhhhhhhc---cCCCCeEcCCEEE
Confidence 99999999987 3478999999874
No 15
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=2.2e-60 Score=468.45 Aligned_cols=378 Identities=20% Similarity=0.271 Sum_probs=318.9
Q ss_pred CchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhC-CCCCCCEEEEEcCCCCcHHHHHHHHHHcCcE
Q 013850 27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHL-GITKKDVVLIFAPNSIHFPICFLGVIAIGAI 105 (435)
Q Consensus 27 ~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~-g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~ 105 (435)
+|+.++|.++++++|+++|+++. ++++||+||.++++++|+.|++. |.++||+|+++++|++++++++|||+++|++
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~~--~~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~ 78 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRSQ--GQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHP 78 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET--TEEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHHTCC
T ss_pred CcHHHHHHHHHHHCCCCeEEEcC--CceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHhCCE
Confidence 57899999999999999999987 48999999999999999999874 8889999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcCCCcEEeccCCcccccccccccccccchhhhhhhcCCCCCCC
Q 013850 106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIP 185 (435)
Q Consensus 106 ~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (435)
++|+++.++.+++.++++.++++++|+++...... . ........+.++...... ....
T Consensus 79 ~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~--~-------------------~~~~~~~~~~~~~~~~~~-~~~~ 136 (511)
T 3e7w_A 79 YIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDA--V-------------------GQQIQTVSAEELLENEGG-SVSQ 136 (511)
T ss_dssp EEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTC--C-------------------CCSSCEEEHHHHHTSCSC-CCCG
T ss_pred EEecCCCChHHHHHHHHHhCCCCEEEecccccchh--c-------------------ccccceecHhhhhccccC-Cccc
Confidence 99999999999999999999999999975432110 0 011122334444433221 2222
Q ss_pred CCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhcCcEEE
Q 013850 186 DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV 265 (435)
Q Consensus 186 ~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~~i~ 265 (435)
.....++++++|+|||||||.||+|.++|+++.+...+......+.. +|++++.+|++|..++. .++.++..|++++
T Consensus 137 ~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~--~d~~l~~~p~~~~~~~~-~~~~~l~~G~~~~ 213 (511)
T 3e7w_A 137 DQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSG--GKIFLNQAPFSFDLSVM-DLYPCLQSGGTLH 213 (511)
T ss_dssp GGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTT--TCEEEECSCTTSTHHHH-HHHHHHHTTCEEE
T ss_pred cccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCc--cceEEEeCCccHHHHHH-HHHHHHhcCCEEE
Confidence 34567899999999999999999999999999998777665555533 39999999999999984 7899999999999
Q ss_pred ecCC---CCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCeeecCc
Q 013850 266 SMGK---FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGY 342 (435)
Q Consensus 266 ~~~~---~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~y 342 (435)
+.+. +++..+++.++++++|++.++|+++..|++........++++|.+++||+++++++.+++++.|+++++++.|
T Consensus 214 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~Y 293 (511)
T 3e7w_A 214 CVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTY 293 (511)
T ss_dssp ECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECC
T ss_pred EcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCc
Confidence 9875 6899999999999999999999999999998877777899999999999999999999999999879999999
Q ss_pred CcccccccccccCCCC---CCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCccccccccc
Q 013850 343 GMTETCAPISLENPLV---GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWG 419 (435)
Q Consensus 343 G~tE~~~~~~~~~~~~---~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~ 419 (435)
|+||+++.++...... ......++|+|+++++++|+| ++|+++++|+.|||+++|++++.| ||++|+.|++.|.
T Consensus 294 G~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~G--Y~~~~~~t~~~f~ 370 (511)
T 3e7w_A 294 GPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMD-EEGQPLPEGEKGEIVIAGPSVSRG--YLGEPELTEKAFF 370 (511)
T ss_dssp CCGGGSSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEEC-TTSCBCCTTCCEEEEEESTTSCCC--BTTCHHHHHHHEE
T ss_pred ccchheeeeeEEeccccccccCCcCCCcceeCCCEEEEEC-CCCCCCCCCCceEEEEecCccChh--hCCCcccchhhhc
Confidence 9999987766432221 133556799999999999999 579999999999999999999999 9999999999872
Q ss_pred ccccCcceecCCCCC
Q 013850 420 CEHTDSFIRGKDQQT 434 (435)
Q Consensus 420 ~~~~~~~~~tgD~~~ 434 (435)
-.+.+.||+|||+++
T Consensus 371 ~~~g~~~~~TGDlg~ 385 (511)
T 3e7w_A 371 SHEGQWAYRTGDAGF 385 (511)
T ss_dssp ESSSSEEEEEEEEEE
T ss_pred CCCCCEEEeCCCeEE
Confidence 112223799999864
No 16
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=6.6e-60 Score=467.13 Aligned_cols=383 Identities=21% Similarity=0.320 Sum_probs=308.9
Q ss_pred chHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEEE
Q 013850 28 SMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIAS 107 (435)
Q Consensus 28 tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v 107 (435)
++.++|.++++ +|+++|+++. ++.+||+||.++++++|+.|+++|+++||+|+|+++|++++++++|||+++|++++
T Consensus 25 ~~~~~l~~~~~-~p~~~A~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v 101 (529)
T 2v7b_A 25 FAAYLFRLNET-RAGKTAYIDD--TGSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPV 101 (529)
T ss_dssp HHHHHHHHTGG-GTTSEEEECS--SCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHhhhc-cCCceEEEeC--CCCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCceEE
Confidence 37888888888 9999999987 48999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcC-----C-CcEEeccCCcccccccccccccccchhhhhhhcCCC
Q 013850 108 TANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----L-PAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSV 181 (435)
Q Consensus 108 ~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (435)
|+++.++.+++.++++.++++++|+++.....+.... . ..+++..... ........++++.....
T Consensus 102 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~-- 172 (529)
T 2v7b_A 102 VANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRE-------SEPRLAPLFEELIDAAA-- 172 (529)
T ss_dssp ECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---CCEEEEECC-------------CCCBHHHHHHTSC--
T ss_pred ecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccccCceEEEecccc-------cccccccchhhhhccCC--
Confidence 9999999999999999999999999988766554331 1 2222211100 00011224555554322
Q ss_pred CCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHH-HHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhc
Q 013850 182 TDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNF-IAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQK 260 (435)
Q Consensus 182 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l-~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~ 260 (435)
.........++++++|+|||||||.||+|.++|+++ ............+ ..+|++++.+|++|.+++...++.++..
T Consensus 173 ~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~--~~~d~~~~~~p~~~~~g~~~~~~~~l~~ 250 (529)
T 2v7b_A 173 PAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGI--AENDVVFSAAKLFFAYGLGNGLTFPLSV 250 (529)
T ss_dssp CCSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCC--CTTCEEEESSCTTSHHHHHHHTHHHHHH
T ss_pred CcccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCC--CCCcEEEEeecHHHHHHHHHHHHHHHhc
Confidence 222334567899999999999999999999999998 4443221111222 3349999999999999997667889999
Q ss_pred CcEEEec-CCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCeee
Q 013850 261 GNCVVSM-GKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIF 339 (435)
Q Consensus 261 G~~i~~~-~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~ 339 (435)
|+++++. +.+++..+++.++++++|++.++|+++..|++..........+||.+++||+++++++.+++++.++ ++++
T Consensus 251 G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~g-~~i~ 329 (529)
T 2v7b_A 251 GATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAIRICTSAGEALPREIGERFTAHFG-CEIL 329 (529)
T ss_dssp TCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCGGGCCCCEEEECSSCCCHHHHHHHHHHHS-CCEE
T ss_pred CcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcccccccCCceEEEEEcCCCCCHHHHHHHHHHhC-Ccee
Confidence 9999988 6789999999999999999999999999999875444331348999999999999999999999886 9999
Q ss_pred cCcCcccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCccccccccc
Q 013850 340 QGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWG 419 (435)
Q Consensus 340 ~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~ 419 (435)
+.||+||++.++...... ..+.+++|+|+++++++|+| ++++++++|+.|||+++|++++.| ||++++.|.+.|
T Consensus 330 ~~YG~TE~~~~~~~~~~~--~~~~~~~G~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~~~~g--Y~~~~~~t~~~f- 403 (529)
T 2v7b_A 330 DGIGSTEMLHIFLSNRAG--AVEYGTTGRPVPGYEIELRD-EAGHAVPDGEVGDLYIKGPSAAVM--YWNNREKSRATF- 403 (529)
T ss_dssp EEEECTTTSSEEEECCTT--CCCTTSCCEECTTCEEEEEC-TTSCBCCTTSCEEEEEECTTCCCC--BTTCHHHHHHHE-
T ss_pred eeEchhhcCceeeccccC--CCccCCcccCCCCCEEEEEC-CCCCCCCCCCccEEEEecCCcccc--cCCChHHHHHhh-
Confidence 999999997665544333 35678999999999999999 689999999999999999999999 999999999988
Q ss_pred ccccCcceecCCCCC
Q 013850 420 CEHTDSFIRGKDQQT 434 (435)
Q Consensus 420 ~~~~~~~~~tgD~~~ 434 (435)
.++||+|||+++
T Consensus 404 ---~~~~~~TGDl~~ 415 (529)
T 2v7b_A 404 ---LGEWIRSGDKYC 415 (529)
T ss_dssp ---ETTEEEEEEEEE
T ss_pred ---hcCCcccCceEE
Confidence 478999999763
No 17
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=5.6e-60 Score=465.46 Aligned_cols=375 Identities=24% Similarity=0.334 Sum_probs=310.8
Q ss_pred CCchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcE
Q 013850 26 SFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI 105 (435)
Q Consensus 26 ~~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~ 105 (435)
+.|+.++|.++++++|+++|+++. ++.+||+||.++++++|+.|++.|+++||+|+|+++|++++++++|||+++|++
T Consensus 5 ~~tl~~~l~~~a~~~pd~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~ 82 (509)
T 3ivr_A 5 DFTLADVYRRNAALFPDRTAFMVD--GVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAI 82 (509)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCE
T ss_pred cCCHHHHHHHHHHHCCCceEEEEC--CcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCE
Confidence 489999999999999999999987 589999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcC-----CCcEEeccCCcccccccccccccccchhhhhhhcCC
Q 013850 106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGS 180 (435)
Q Consensus 106 ~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (435)
++|+++.++.+++.++++.++++++|++.+....+.... ...++...+ ....+.++......
T Consensus 83 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~ 149 (509)
T 3ivr_A 83 LLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGD-------------GSGPFAPFKDLASD 149 (509)
T ss_dssp EEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSSCCEEEESSC-------------CCSSCEEGGGTCCC
T ss_pred EEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccCCceEEEEcCC-------------CCcChhhHhhccCC
Confidence 999999999999999999999999999988766532221 112221111 11122223221111
Q ss_pred CCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhc
Q 013850 181 VTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQK 260 (435)
Q Consensus 181 ~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~ 260 (435)
.........++++++|+|||||||.||+|.++|+++.+..........+... |++++.+|++|.+++...+...+..
T Consensus 150 -~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~--d~~l~~~p~~~~~g~~~~~~~~~~~ 226 (509)
T 3ivr_A 150 -TPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEA--DVNLGMLPLFHVTGLGLMLTLQQAG 226 (509)
T ss_dssp -SCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTT--CEEEECSCTTSHHHHHHHHHHHHHT
T ss_pred -CCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCC--cEEEEeCCCcchhHHHHHHHHHHhC
Confidence 2233456788999999999999999999999999999988776665555333 9999999999999996444444554
Q ss_pred CcEEEecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCeeec
Q 013850 261 GNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQ 340 (435)
Q Consensus 261 G~~i~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~ 340 (435)
|+++ +...+++..+++.++++++|++.++|+++..|++.. ....+++||.++.+|++ ++.+.+.+.++++++++
T Consensus 227 g~~~-~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~--~~~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~ 300 (509)
T 3ivr_A 227 GASV-IAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQA--APAQLASLRAVTGLDTP---ETIERFEATCPNATFWA 300 (509)
T ss_dssp CEEE-ECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHC--CGGGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEE
T ss_pred CcEE-EecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcc--cccchhhhheecccCCh---HHHHHHHHhcCCCeEEc
Confidence 5544 445889999999999999999999999999999876 34568899999999987 88999999997799999
Q ss_pred CcCcccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCcccccccccc
Q 013850 341 GYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGC 420 (435)
Q Consensus 341 ~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~~ 420 (435)
.||+||++++++..... .....+|+|+++++++|+| ++++++++|+.|||+++|++++.| ||++|+.|.+.|
T Consensus 301 ~YG~TE~~~~~~~~~~~---~~~~~~G~p~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~~~~g--Y~~~~~~t~~~f-- 372 (509)
T 3ivr_A 301 TFGQSETSGLSTFAPYR---DRPKSAGRPLFWRTVAVVD-AEDRPLPPGEVGEIVLRGPTVFKG--YWNNAAATQHAF-- 372 (509)
T ss_dssp EEEEGGGTEEEEEEEGG---GSTTSCCEECTTCEEEEEC-TTSCBCCTTCCEEEEEESTTSCCE--ETTCHHHHHHHT--
T ss_pred ccCccccccccccCccc---cCCCcccccCCCcEEEEEC-CCCCCCCCCCceEEEEecCCcccc--ccCCHHHhHHHh--
Confidence 99999998876654332 2334599999999999999 579999999999999999999999 999999999988
Q ss_pred cccCcceecCCCCC
Q 013850 421 EHTDSFIRGKDQQT 434 (435)
Q Consensus 421 ~~~~~~~~tgD~~~ 434 (435)
.++||+|||+++
T Consensus 373 --~~g~~~TGDl~~ 384 (509)
T 3ivr_A 373 --RNGWHHTGDMGR 384 (509)
T ss_dssp --GGGSEEEEEEEE
T ss_pred --hcCCcccccEEE
Confidence 478999999874
No 18
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=3.2e-60 Score=468.76 Aligned_cols=379 Identities=18% Similarity=0.194 Sum_probs=317.8
Q ss_pred CchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEE
Q 013850 27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106 (435)
Q Consensus 27 ~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~ 106 (435)
.|+.+.|.++++++|+++|+.+. ++.+||+||.++++++|++|++.|+++||+|+++++|++++++++|||+++|+++
T Consensus 4 ~~l~~~l~~~a~~~p~~~a~~~~--~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~ 81 (521)
T 3l8c_A 4 KDMIDSIEQFAQTQADFPVYDCL--GERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGHAY 81 (521)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHHHHCCCCcceecC--CCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEE
Confidence 68999999999999999999987 5899999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcCCCcEEeccCCcccccccccccccccchhhhhhhc-CCCCCCC
Q 013850 107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELS-GSVTDIP 185 (435)
Q Consensus 107 v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 185 (435)
+|+++.++.+++.++++.++++++|++++....+... . ...+.++.... .......
T Consensus 82 vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~----~-------------------~~~~~~~~~~~~~~~~~~~ 138 (521)
T 3l8c_A 82 IPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIEGI----S-------------------LVSLSEIESAKLAEMPYER 138 (521)
T ss_dssp EEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCTTS----E-------------------EEEHHHHHHHHHHTCCCCC
T ss_pred EecCccccHHHHHHHHHhCCCCEEEecCccccccccC----c-------------------ccchhhhhhcccccCCccc
Confidence 9999999999999999999999999987653221110 0 11111211110 0012233
Q ss_pred CCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhcCcEEE
Q 013850 186 DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV 265 (435)
Q Consensus 186 ~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~~i~ 265 (435)
.....++++++|+|||||||.||+|.++|+++.+...+......+.....+++++..|++|..++. .++.++..|++++
T Consensus 139 ~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~l~~G~~~~ 217 (521)
T 3l8c_A 139 THSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVM-YWAPTLALGGTLF 217 (521)
T ss_dssp SSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHH-HHHHHHHTTCEEE
T ss_pred CCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHH-HHHHHHhcCCEEE
Confidence 455678999999999999999999999999999876665544333334449999999999998884 7888999999999
Q ss_pred ecCCC---CHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCeeecCc
Q 013850 266 SMGKF---DIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGY 342 (435)
Q Consensus 266 ~~~~~---~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~y 342 (435)
+.+.. ++..+++.+.++++|++.++|+++..+..........+++||.+++||+++++++.+++.+.++++++++.|
T Consensus 218 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~Y 297 (521)
T 3l8c_A 218 ALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAY 297 (521)
T ss_dssp ECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEE
T ss_pred EcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhccccccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCc
Confidence 98764 899999999999999999999999999988777777899999999999999999999999999879999999
Q ss_pred CcccccccccccCCCCC---CcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCccccccccc
Q 013850 343 GMTETCAPISLENPLVG---VRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWG 419 (435)
Q Consensus 343 G~tE~~~~~~~~~~~~~---~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~ 419 (435)
|+||+++.++....... .....++|+|+++++++|+| ++++++++|+.|||+++||+++.| ||++|+.|++.|.
T Consensus 298 G~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~G--Y~~~~~~t~~~f~ 374 (521)
T 3l8c_A 298 GPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIID-EDGKELSSGEQGEIIVTGPAVSKG--YLNNPEKTAEAFF 374 (521)
T ss_dssp CCGGGSSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEEC-TTSCBCCTTCCEEEEEESTTSCSC--BTTCHHHHHHHEE
T ss_pred CccHHhhhhceeecccccccCCCccccccccCCCEEEEEC-CCcCCCCCCCceEEEecccccChh--hcCCchHhhccCc
Confidence 99999877664322211 23456899999999999999 689999999999999999999999 9999999999874
Q ss_pred ccccCcceecCCCCC
Q 013850 420 CEHTDSFIRGKDQQT 434 (435)
Q Consensus 420 ~~~~~~~~~tgD~~~ 434 (435)
..+.++||+|||+++
T Consensus 375 ~~~~~~~~~TGDlg~ 389 (521)
T 3l8c_A 375 TFKGQPAYHTGDIGS 389 (521)
T ss_dssp EETTEEEEEEEEEEE
T ss_pred CCCCceeeeCCCEEE
Confidence 345578999999874
No 19
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=1.3e-59 Score=474.62 Aligned_cols=396 Identities=21% Similarity=0.256 Sum_probs=318.6
Q ss_pred chHHHHHhhcccCCCceeeeecC----CCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcC
Q 013850 28 SMVHFLFRNSASYSSKLALIDAD----SDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIG 103 (435)
Q Consensus 28 tl~~~l~~~~~~~p~~~a~~~~~----~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G 103 (435)
++.++|.++++++|+++|+++.. .++.+||+||.++++++|+.|+++|+++||+|+|+++|++++++++|||+++|
T Consensus 77 ~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G 156 (652)
T 1pg4_A 77 LAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIG 156 (652)
T ss_dssp HHHHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCCCceEEEEEcCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcC
Confidence 45677888889999999999632 23789999999999999999999999999999999999999999999999999
Q ss_pred cEEEecCCCCCHHHHHHHHHhcCCeEEEEccccHH---------HHhh----c---CCCcEEeccCCccccccccccccc
Q 013850 104 AIASTANPVYTVSELSKQVKDSNPKLVITVPELWD---------KVKD----L---NLPAVLLGSKDKVSSSGLISRSSK 167 (435)
Q Consensus 104 ~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~---------~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~ 167 (435)
++++|+++.++.+++.+++++++++++|+++.... .+.. . ....+++....... .. .....
T Consensus 157 av~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~-~~--~~~~~ 233 (652)
T 1pg4_A 157 AVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSD-ID--WQEGR 233 (652)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCC-CC--CCBTT
T ss_pred cEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCc-cc--ccCCC
Confidence 99999999999999999999999999999876421 1111 1 11222222211000 00 00112
Q ss_pred ccchhhhhhhcCCCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHH-HhhhhhccCCCcEEEecchHHH
Q 013850 168 IVSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMI-SAHQELVGELDHVVLCVLPMFH 246 (435)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~-~~~~~~~~~~~d~~l~~~~l~~ 246 (435)
...|++++.... .........++++++|+|||||||.||||+++|++++...... ...+.+ ..+|++++.+|++|
T Consensus 234 ~~~~~~~~~~~~--~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~--~~~d~~l~~~~~~~ 309 (652)
T 1pg4_A 234 DLWWRDLIEKAS--PEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDY--HPGDIYWCTADVGW 309 (652)
T ss_dssp EEEHHHHHTTSC--SCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTC--CTTCEEEECSCTTS
T ss_pred ceeHHHHHhhcC--CCCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCC--CCCCEEEEccCCee
Confidence 245666665333 2233445678999999999999999999999999987765332 222333 33499999999999
Q ss_pred HHHHHHHHHhhhhcCcEEEecCC----CCHHHHHHHHHhcCceEEEecHHHHHHHHhccc--ccCCCCcceeEEEecCCC
Q 013850 247 VFGLSVILYDQLQKGNCVVSMGK----FDIEMALRAIEKYRVTVWWVVPPIILALAKNSL--VRKFDISSLKLVGSGAAP 320 (435)
Q Consensus 247 ~~g~~~~~~~~l~~G~~i~~~~~----~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~lr~i~~gG~~ 320 (435)
+++..+.++.+|..|+++++.+. +++..+++.++++++|+++++|+++..|.+... ....++++||.+++||++
T Consensus 310 ~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~ 389 (652)
T 1pg4_A 310 VTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEP 389 (652)
T ss_dssp HHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSC
T ss_pred eechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCC
Confidence 99986678899999999999864 589999999999999999999999999998754 345678999999999999
Q ss_pred CcHHHHHHHHhhCC--CCeeecCcCcccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeC
Q 013850 321 LGKELMEDCQKNIP--GATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRG 398 (435)
Q Consensus 321 l~~~~~~~~~~~~~--~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g 398 (435)
+++++.+++.+.++ ++++++.||+||+++.+....+.....+.+++|+|++|++++|+| ++|++++.|+.|||+++|
T Consensus 390 l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d-~~g~~v~~g~~GEl~i~g 468 (652)
T 1pg4_A 390 INPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGHPQEGATEGNLVITD 468 (652)
T ss_dssp CCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBCCSSEEEEEEECS
T ss_pred CCHHHHHHHHHHhCCCCCcEEccccCcccccceecCCCCCcCccCCccccCcCCCeEEEEC-CCCCCcCCCceEEEEEcc
Confidence 99999999999886 389999999999997766654433345778999999999999999 589999999999999999
Q ss_pred --CCccccccccCCcccccccccccccCcceecCCCCC
Q 013850 399 --PNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT 434 (435)
Q Consensus 399 --~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~tgD~~~ 434 (435)
|+++.| ||++++.+.+.+ +-..+|||+|||+++
T Consensus 469 ~~p~~~~g--Y~~~~e~~~~~~-~~~~~g~y~TGDlg~ 503 (652)
T 1pg4_A 469 SWPGQART--LFGDHERFEQTY-FSTFKNMYFSGDGAR 503 (652)
T ss_dssp CCTTCCCE--ETTCHHHHHHHH-HSSSTTSEEEEEEEE
T ss_pred CCCchhhh--hcCCHHHHHhhh-hhcCCCEEECCcEEE
Confidence 799999 999999887754 112367999999874
No 20
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=2.3e-59 Score=465.94 Aligned_cols=382 Identities=19% Similarity=0.246 Sum_probs=315.9
Q ss_pred Cc-hHHHHHhhccc-----CCCceeeeecC-C--CcceeHHHHHHHHHHHHHHHHhC-CCCCCCEEEEEcCCCCcHHHHH
Q 013850 27 FS-MVHFLFRNSAS-----YSSKLALIDAD-S--DESLSFSQFKSIVIKVSHSFRHL-GITKKDVVLIFAPNSIHFPICF 96 (435)
Q Consensus 27 ~t-l~~~l~~~~~~-----~p~~~a~~~~~-~--~~~~Ty~el~~~~~~la~~L~~~-g~~~gd~V~l~~~~~~~~~~~~ 96 (435)
.+ +.++|.+++++ +|+++|+++.+ . ++.+||+||.++++++|+.|++. |+++||+|+|+++|++++++++
T Consensus 37 ~~~~~~~l~~~a~~~~a~~~p~~~al~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~~~~~ 116 (570)
T 3c5e_A 37 FNFASDVLDHWADMEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVI 116 (570)
T ss_dssp CCHHHHTHHHHHHHHHTTSSCCCEEEEEECSSSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHHHHHHH
T ss_pred ccHHHHHHHHHHhhccccCCCCceEEEEEcCCCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHHHHHHH
Confidence 44 46888888888 99999998742 1 37899999999999999999998 9999999999999999999999
Q ss_pred HHHHHcCcEEEecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcC-----CCcEEeccCCcccccccccccccccch
Q 013850 97 LGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN-----LPAVLLGSKDKVSSSGLISRSSKIVSF 171 (435)
Q Consensus 97 lA~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (435)
|||+++|++++|+++.++.+++.++++.++++++|++++....+.... .+.+++..+. .......+
T Consensus 117 lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~ 187 (570)
T 3c5e_A 117 LGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEK---------SCDGWLNF 187 (570)
T ss_dssp HHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCTTCCEEEEESSS---------CCTTSEEH
T ss_pred HHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCCceeEEEEeccc---------CccccccH
Confidence 999999999999999999999999999999999999988776654421 1122222110 11123456
Q ss_pred hhhhhhcCCCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHH--HHHHHHhhhhhccCCCcEEEecchHHHHHH
Q 013850 172 HDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIA--ASLMISAHQELVGELDHVVLCVLPMFHVFG 249 (435)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~--~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g 249 (435)
++++.... .........++++++|+|||||||.||+|.++|+ ++. ..... ....+ ..+|++++.+|++|.++
T Consensus 188 ~~~~~~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~~~--~~~d~~~~~~p~~~~~~ 261 (570)
T 3c5e_A 188 KKLLNEAS--TTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWTGL--QASDIMWTISDTGWILN 261 (570)
T ss_dssp HHHHHHSC--SCCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTTSC--CTTCEEEECCCTTSHHH
T ss_pred HHHhhccc--ccccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhcCC--CCCceEEEcCchHHHHH
Confidence 66554433 2223345678999999999999999999999999 444 22221 22222 33499999999999999
Q ss_pred HHHHHHhhhhcCcEEEecC--CCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHH
Q 013850 250 LSVILYDQLQKGNCVVSMG--KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELME 327 (435)
Q Consensus 250 ~~~~~~~~l~~G~~i~~~~--~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~ 327 (435)
+...++.++..|+++++.+ .+++..+++.++++++|++.++|+++..|.+.. ....++++||.+++||+++++++.+
T Consensus 262 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~~~lr~i~~gGe~l~~~~~~ 340 (570)
T 3c5e_A 262 ILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD-LSSYKFPHLQNCVTVGESLLPETLE 340 (570)
T ss_dssp HHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC-TTTCCCTTCCEEEEESSCCCHHHHH
T ss_pred HHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc-ccccccccceEEEEcCCcCCHHHHH
Confidence 8767889999999999986 689999999999999999999999999999863 3445688999999999999999999
Q ss_pred HHHhhCCCCeeecCcCcccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEe-----CCCcc
Q 013850 328 DCQKNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVR-----GPNVT 402 (435)
Q Consensus 328 ~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~-----g~~~~ 402 (435)
+|++.++ +++++.||+||++..++..... ..+.+++|+|+++++++|+| ++++++++|+.|||+++ |++++
T Consensus 341 ~~~~~~g-~~i~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~~~v~i~d-~~g~~~~~G~~GEl~v~~~~~~g~~v~ 416 (570)
T 3c5e_A 341 NWRAQTG-LDIRESYGQTETGLTCMVSKTM--KIKPGYMGTAASCYDVQIID-DKGNVLPPGTEGDIGIRVKPIRPIGIF 416 (570)
T ss_dssp HHHHHHS-CCCEEEEEETTTEEEEECCTTS--CCCTTCCCEECTTCCEEEEC-TTSCBCCTTCCEEEEEECSSBCCTTCC
T ss_pred HHHHHhC-CchhhccchhhcccceecCccc--ccCCCcccccCCCceEEEEC-CCCCCCCCCCCCeeEEeccCCCCchhh
Confidence 9999885 9999999999998665544322 45678999999999999999 57999999999999999 99999
Q ss_pred ccccccCCcccccccccccccCcceecCCCCC
Q 013850 403 PGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT 434 (435)
Q Consensus 403 ~g~~y~~~~~~~~~~~~~~~~~~~~~tgD~~~ 434 (435)
.| ||++|+.|.+.| .++||+|||+++
T Consensus 417 ~G--Y~~~~~~t~~~f----~~~~~~TGDlg~ 442 (570)
T 3c5e_A 417 SG--YVDNPDKTAANI----RGDFWLLGDRGI 442 (570)
T ss_dssp CE--ETTCHHHHHHTE----ETTEEEEEEEEE
T ss_pred cc--ccCChhHhhhhh----cCCccccceeEE
Confidence 99 999999999988 478999999864
No 21
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=1.1e-59 Score=471.34 Aligned_cols=371 Identities=16% Similarity=0.149 Sum_probs=307.1
Q ss_pred CCchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcE
Q 013850 26 SFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI 105 (435)
Q Consensus 26 ~~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~ 105 (435)
+.|+.++|.++++++|+++|+++.+ +.+||+||.++++++|+.|++.|+++||+|+|+++|++++++++|||+++|++
T Consensus 26 ~~tl~~~~~~~a~~~Pd~~Av~~~~--~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lailkaGa~ 103 (620)
T 4dg8_A 26 HPTVVARFSEMAALHPHREAIRDRF--GSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLSGHH 103 (620)
T ss_dssp SCCHHHHHHHHHHHCTTSEEEEETT--EEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHHHTTCE
T ss_pred CCCHHHHHHHHHHhCCCCeEEEcCC--CcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCE
Confidence 3799999999999999999999874 89999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcCCCcEEeccCCcccccccccccccccchhhhhhhcCCCCCCC
Q 013850 106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIP 185 (435)
Q Consensus 106 ~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (435)
++|++|.++.+++.++++.+++++++++.......... .. ..+... ........
T Consensus 104 ~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~--~~---------------------~~~~~~---~~~~~~~~ 157 (620)
T 4dg8_A 104 YLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPANGL--PC---------------------VPVRHL---PAAPASVA 157 (620)
T ss_dssp EEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCCTTS--CE---------------------EEGGGC---CCCCCCSS
T ss_pred EEeeCccChHHHHHHHHHhCCCcEEEecCcccccccCC--ce---------------------eeeccC---CcCCcccc
Confidence 99999999999999999999999999765432211100 00 001100 01012222
Q ss_pred CCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhcCcEEE
Q 013850 186 DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV 265 (435)
Q Consensus 186 ~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~~i~ 265 (435)
.....++++++|+|||||||.||||+++|+++.+.... .....+ ..++++++.+|++|..++. .++.++..|++++
T Consensus 158 ~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~--~~~d~~l~~~p~~~~~~~~-~~~~~l~~G~~~v 233 (620)
T 4dg8_A 158 RPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAF--APQMRFLVNSPLSFDAATL-EIWGALLNGGCCV 233 (620)
T ss_dssp CCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTT--CTTCEEEECSCTTSTHHHH-HHHHHHTTTCEEE
T ss_pred CCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCC--CCCCEEEEECccCHHHHHH-HHHHHHhcCCEEE
Confidence 34457899999999999999999999999999776443 122222 3349999999999999985 7899999999999
Q ss_pred ecC--CCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCeeecCcC
Q 013850 266 SMG--KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYG 343 (435)
Q Consensus 266 ~~~--~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~yG 343 (435)
+.+ .+++..+++.++++++|++.++|+++..|.+.. ...+++||.+++|||++++++.+++.+.+++++++|.||
T Consensus 234 ~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~---~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG 310 (620)
T 4dg8_A 234 LNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLD---PDCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYG 310 (620)
T ss_dssp ECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHC---GGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEEC
T ss_pred eCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcC---hhhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEc
Confidence 964 579999999999999999999999999998753 346889999999999999999999999888899999999
Q ss_pred cccccccccccCC--CCCCcCCCCcccccCCcEEEEEeCCCCcc-CCCCCceeEEEeCCCccccccccCCccccccccc-
Q 013850 344 MTETCAPISLENP--LVGVRRSGSAGTLVAGVEAQIVSVDTLKP-LPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWG- 419 (435)
Q Consensus 344 ~tE~~~~~~~~~~--~~~~~~~~~~G~~~~~~~~~i~d~~~~~~-~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~- 419 (435)
+||++..++.... ........++|+|+++++++|+|+ ++.+ ++.|++|||+|+|++++.| ||++|+.|++.|.
T Consensus 311 ~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~-~~~~~~~~g~~GEl~i~G~~v~~G--Y~~~p~~t~~~f~~ 387 (620)
T 4dg8_A 311 PTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDE-HGQEIAEPDRAGEIVAFGAGLAQG--YRNDAARTRASFVE 387 (620)
T ss_dssp CGGGCSCSEEEECCTGGGGSSSCCCBEECTTEEEEEECT-TSCBCCSSSCCEEEEEEETTCCSE--ETTCHHHHHHHEEE
T ss_pred hhhhhhheEEEeccccccCCCCCCceecccCcEEEEECc-cCCCCCCCCCceEEEEeccccccc--cCCChhhhhhhhcc
Confidence 9999877654322 222345678999999999999995 5555 8899999999999999999 9999999999882
Q ss_pred -ccccC--cceecCCCCC
Q 013850 420 -CEHTD--SFIRGKDQQT 434 (435)
Q Consensus 420 -~~~~~--~~~~tgD~~~ 434 (435)
-+..+ +||+|||+++
T Consensus 388 ~p~~~~~~~~yrTGDl~~ 405 (620)
T 4dg8_A 388 LPYRGRLLRAYRTGDRAR 405 (620)
T ss_dssp EEETTEEEEEEEEEEEEE
T ss_pred CCCCCCCceEEeCCCEEE
Confidence 11112 7999999874
No 22
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=2.2e-59 Score=465.40 Aligned_cols=379 Identities=18% Similarity=0.241 Sum_probs=308.6
Q ss_pred CCCCCCCCCCCchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHH
Q 013850 17 PPLVLPSDPSFSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICF 96 (435)
Q Consensus 17 ~~~~~~~~~~~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~ 96 (435)
....+|.. .|+.++|.++++++|+++|+++. ++.+||+||.++++++|+.|+++|+++||+|+|+++|++++++++
T Consensus 31 ~~~~~~~~--~~l~~~l~~~a~~~p~~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 106 (563)
T 1amu_A 31 TKAEYPRD--KTIHQLFEEQVSKRPNNVAIVCE--NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGI 106 (563)
T ss_dssp CCCCCCTT--CCHHHHHHHHHHHCTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred CCCCCCCC--CcHHHHHHHHHHHCCCCeEEEeC--CceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 33444444 79999999999999999999986 489999999999999999999999999999999999999999999
Q ss_pred HHHHHcCcEEEecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcCCCcEEeccCCcccccccccccccccchhhhhh
Q 013850 97 LGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIE 176 (435)
Q Consensus 97 lA~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (435)
|||+++|++++|+++.++.+++.++++.++++++|++++....+........+...... .+.
T Consensus 107 lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~---- 168 (563)
T 1amu_A 107 LAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFNGQVEIFEED--------------TIK---- 168 (563)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCCCSEEEECCCS--------------TTT----
T ss_pred HHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhccccCceeeecch--------------hhc----
Confidence 99999999999999999999999999999999999998876665544322111111100 000
Q ss_pred hcCCCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHh
Q 013850 177 LSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYD 256 (435)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~ 256 (435)
... .........++++++|+|||||||.||||+++|+++.+..........+. .+|++++.+|++|..++. .++.
T Consensus 169 ~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~--~~d~~l~~~p~~~~~~~~-~~~~ 243 (563)
T 1amu_A 169 IRE--GTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVT--EKDRIGQFASISFDASVW-EMFM 243 (563)
T ss_dssp TSC--CSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCC--TTCEEEECSCTTSTHHHH-HHHH
T ss_pred ccc--CccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCC--CCCEEEEeCCccHHHHHH-HHHH
Confidence 000 11122345678999999999999999999999999988766554444443 349999999999999885 7888
Q ss_pred hhhcCcEEEecCC---CCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhC
Q 013850 257 QLQKGNCVVSMGK---FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNI 333 (435)
Q Consensus 257 ~l~~G~~i~~~~~---~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~ 333 (435)
++..|+++++.+. +++..+++.++++++|++.++|+++..|... .+++||.+++||+++++++.++|++.
T Consensus 244 ~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------~~~~lr~~~~gG~~l~~~~~~~~~~~- 316 (563)
T 1amu_A 244 ALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE------RILSIQTLITAGSATSPSLVNKWKEK- 316 (563)
T ss_dssp HHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT------TCCSCSEEEEESSCCCHHHHHHHTTT-
T ss_pred HHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc------ccccccEEEEEEecCCHHHHHHHHhC-
Confidence 9999999999875 6899999999999999999999998877532 46799999999999999999999875
Q ss_pred CCCeeecCcCcccccccccccCCCC-CCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCcc
Q 013850 334 PGATIFQGYGMTETCAPISLENPLV-GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFV 412 (435)
Q Consensus 334 ~~~~~~~~yG~tE~~~~~~~~~~~~-~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~ 412 (435)
+++++.||+||++..++...... ...+..++|+|+++++++|+| +++++++.|+.|||+++|++++.| ||++|+
T Consensus 317 --~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d-~~~~~~~~g~~GEl~v~g~~v~~G--Y~~~pe 391 (563)
T 1amu_A 317 --VTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVD-ENLQLKSVGEAGELCIGGEGLARG--YWKRPE 391 (563)
T ss_dssp --SEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCE--ETTCHH
T ss_pred --CeEEEEECcCHHhHhheeeecccccCCCCCcccceeCCCEEEEEC-CCcCCCCCCCcEEEEEechhhChh--hCCCch
Confidence 89999999999987665433221 123567899999999999999 689999999999999999999999 999999
Q ss_pred cccccc---cccccCcceecCCCCC
Q 013850 413 FTLFLW---GCEHTDSFIRGKDQQT 434 (435)
Q Consensus 413 ~~~~~~---~~~~~~~~~~tgD~~~ 434 (435)
.|.+.| .+.+.++||+|||+++
T Consensus 392 ~t~~~f~~~~~~~g~~w~~TGDlg~ 416 (563)
T 1amu_A 392 LTSQKFVDNPFVPGEKLYKTGDQAR 416 (563)
T ss_dssp HHHHHEEECSSSTTSEEEEEEEEEE
T ss_pred hhhhhcccCCCCCCCEEEecCCEEE
Confidence 999988 2223457999999874
No 23
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=9.6e-60 Score=469.49 Aligned_cols=372 Identities=18% Similarity=0.240 Sum_probs=308.8
Q ss_pred CchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEE
Q 013850 27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106 (435)
Q Consensus 27 ~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~ 106 (435)
.++.++|.++++++|+++|+++. ++.+||+||.++++++|+.|+++|+++||+|+|+++|++++++++|||+++|+++
T Consensus 75 ~~l~~~l~~~a~~~pd~~A~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~ 152 (570)
T 4gr5_A 75 ACVHELFEAQAARAPDAVALLHE--ADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGY 152 (570)
T ss_dssp CCHHHHHHHHHHHCTTSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEE
T ss_pred CCHHHHHHHHHHHCCCCeEEECC--CCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHHCCEE
Confidence 79999999999999999999987 4899999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcCCCcEEeccCCcccccccccccccccchhhhhhhcCCCCCCCC
Q 013850 107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPD 186 (435)
Q Consensus 107 v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (435)
+|+++.++.+++.++++.++++++|++......+... ..+...+ ....... .....
T Consensus 153 vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~---~~~~~~~-------------------~~~~~~~--~~~~~ 208 (570)
T 4gr5_A 153 TMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRLTGT---TTLYVED-------------------EAASDAP--AGNLA 208 (570)
T ss_dssp EECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSSCSS---EEEECCC----------------------------CCCCC
T ss_pred EEcCCCChHHHHHHHHHhcCCCEEEecchhhhcccCC---cceeeec-------------------ccccccc--ccccC
Confidence 9999999999999999999999999997654332211 1111100 0000001 22233
Q ss_pred CCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhcCcEEEe
Q 013850 187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS 266 (435)
Q Consensus 187 ~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~~i~~ 266 (435)
....++++++|+|||||||.||+|+++|+++.+.... ........+|++++.+|++|..+. ..++.++..|+++++
T Consensus 209 ~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~---~~~~~~~~~d~~l~~~p~~~~~~~-~~~~~~l~~G~~~v~ 284 (570)
T 4gr5_A 209 TGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG---QDYAGFGPDEVFLQCSPVSWDAFG-LELFGALLFGARCVL 284 (570)
T ss_dssp CCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS---CCSSCCSTTCEEEECSCTTSSTHH-HHHHHHHTTTCEEEE
T ss_pred CCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh---hhhcCCCCCCEEEEecCccHHHHH-HHHHHHHhcCCEEEE
Confidence 4567899999999999999999999999999765432 111112334999999999987666 478889999999999
Q ss_pred cC--CCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCeeecCcCc
Q 013850 267 MG--KFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGM 344 (435)
Q Consensus 267 ~~--~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~yG~ 344 (435)
.+ .+++..+++.++++++|++.++|+++..|++... ..+++||.+++||++++.++.+++.+.++++++++.||+
T Consensus 285 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~---~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~ 361 (570)
T 4gr5_A 285 QSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVP---EAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGP 361 (570)
T ss_dssp CSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCG---GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECC
T ss_pred cCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhch---hhCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeech
Confidence 86 4689999999999999999999999999987643 358899999999999999999999999988999999999
Q ss_pred ccccccccccCCCC--CCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCccccccccc--c
Q 013850 345 TETCAPISLENPLV--GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWG--C 420 (435)
Q Consensus 345 tE~~~~~~~~~~~~--~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~--~ 420 (435)
||++++.+...... ......++|+|+++++++|+| ++++++++|++|||+|+|++++.| ||++|+.|.+.|. .
T Consensus 362 TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d-~~~~~~~~G~~GEl~v~g~~v~~G--Y~~~~~~t~~~f~~~~ 438 (570)
T 4gr5_A 362 AESMGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLD-DDLKPAANGALGELYVAGAGLAHG--YVSRPALTAERFVADP 438 (570)
T ss_dssp GGGCSCSEEEECCGGGTTSSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCE--ETTCHHHHHHHEEECT
T ss_pred hhheeeeeeeeecccccCCCccccceeeCCCEEEEEC-CCCCCCCCCCcEEEEEeecccchh--cCCCchhhhcccccCC
Confidence 99987766433221 133456799999999999999 689999999999999999999999 9999999999871 1
Q ss_pred c---ccCcceecCCCCC
Q 013850 421 E---HTDSFIRGKDQQT 434 (435)
Q Consensus 421 ~---~~~~~~~tgD~~~ 434 (435)
+ ..++||+|||+++
T Consensus 439 ~~~~~~~~w~~TGDlg~ 455 (570)
T 4gr5_A 439 FAGPGGERMYRTGDLAR 455 (570)
T ss_dssp TCCSSCCEEEEEEEEEE
T ss_pred CCCCCCCEEEeCCCeEE
Confidence 1 2347999999874
No 24
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=4e-59 Score=471.25 Aligned_cols=398 Identities=21% Similarity=0.260 Sum_probs=318.1
Q ss_pred chHHHHHhhcccCCCceeeeecC----CCcceeHHHHHHHHHHHHHHHH-hCCCCCCCEEEEEcCCCCcHHHHHHHHHHc
Q 013850 28 SMVHFLFRNSASYSSKLALIDAD----SDESLSFSQFKSIVIKVSHSFR-HLGITKKDVVLIFAPNSIHFPICFLGVIAI 102 (435)
Q Consensus 28 tl~~~l~~~~~~~p~~~a~~~~~----~~~~~Ty~el~~~~~~la~~L~-~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~ 102 (435)
++.++|.++++++|+++|++... .++.+||+||.++++++|+.|+ ++|+++||+|+|+++|++++++++|||+++
T Consensus 83 ~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~~ 162 (663)
T 1ry2_A 83 ACYNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRI 162 (663)
T ss_dssp HHHHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Confidence 46677888899999999999732 2478999999999999999999 999999999999999999999999999999
Q ss_pred CcEEEecCCCCCHHHHHHHHHhcCCeEEEEccccHH---------HHhhcC-----CCcEEeccCCcccccccccccccc
Q 013850 103 GAIASTANPVYTVSELSKQVKDSNPKLVITVPELWD---------KVKDLN-----LPAVLLGSKDKVSSSGLISRSSKI 168 (435)
Q Consensus 103 G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~---------~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 168 (435)
|++++|+++.++.+++..+++++++++||+++.... .+.... .+.+++.......... ......
T Consensus 163 Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~--~~~~~~ 240 (663)
T 1ry2_A 163 GAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVA--FHAPRD 240 (663)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCC--CCSSSE
T ss_pred CCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCccc--cCCCcc
Confidence 999999999999999999999999999999876432 122111 1223322211000000 001122
Q ss_pred cchhhhhhhcCCCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHH-hhhhhccCCCcEEEecchHHHH
Q 013850 169 VSFHDLIELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMIS-AHQELVGELDHVVLCVLPMFHV 247 (435)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~-~~~~~~~~~~d~~l~~~~l~~~ 247 (435)
..|.+++.... ...+.....++++++|+|||||||.||||+++|++++....... ....+ ..+|++++..|++|+
T Consensus 241 ~~~~~~~~~~~--~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~--~~~d~~~~~~~~~~~ 316 (663)
T 1ry2_A 241 LDWATEKKKYK--TYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDT--HQEDVFFTAGDIGWI 316 (663)
T ss_dssp EEHHHHHTTSC--SCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCC--CSSCEEEECSCTTSH
T ss_pred ccHHHHHhhcC--CCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCC--CCCcEEEEcCCcHHh
Confidence 34666554332 22334556789999999999999999999999999876653322 22223 334999999999999
Q ss_pred HHHHHHHHhhhhcCcEEEecCC----CCHHHHHHHHHhcCceEEEecHHHHHHHHhccc--ccCCCCcceeEEEecCCCC
Q 013850 248 FGLSVILYDQLQKGNCVVSMGK----FDIEMALRAIEKYRVTVWWVVPPIILALAKNSL--VRKFDISSLKLVGSGAAPL 321 (435)
Q Consensus 248 ~g~~~~~~~~l~~G~~i~~~~~----~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~lr~i~~gG~~l 321 (435)
++..+.++.+|..|+++++.+. +++..+++.|+++++|+++++|++++.|.+... ....++++||.+++||+++
T Consensus 317 ~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l 396 (663)
T 1ry2_A 317 TGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPI 396 (663)
T ss_dssp HHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCC
T ss_pred hhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcCCC
Confidence 9986678899999999999864 589999999999999999999999999988754 3456789999999999999
Q ss_pred cHHHHHHHHhhCC--CCeeecCcCcccccccccccCC-CCCCcCCCCcccccCCcEEEEEeCCCCccCCC-CCceeEEEe
Q 013850 322 GKELMEDCQKNIP--GATIFQGYGMTETCAPISLENP-LVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPP-NQLGEIWVR 397 (435)
Q Consensus 322 ~~~~~~~~~~~~~--~~~~~~~yG~tE~~~~~~~~~~-~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~-g~~Gei~v~ 397 (435)
++++.+++.+.++ ++++++.||+||+++.+....+ .....+++++|+|++|++++|+|+++|++++. |+.|||+++
T Consensus 397 ~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~~Gel~i~ 476 (663)
T 1ry2_A 397 AAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVK 476 (663)
T ss_dssp CHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEES
T ss_pred CHHHHHHHHHHhCCCCceEEEeECCccccCeeeccCCCCCcccCCCccccCcCCCeEEEEcCCCCCcCCCCCcceEEEEe
Confidence 9999999999885 3899999999999876665543 22245778999999999999999658999988 999999999
Q ss_pred C--CCccccccccCCcccccccccccccCcceecCCCCC
Q 013850 398 G--PNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT 434 (435)
Q Consensus 398 g--~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~tgD~~~ 434 (435)
| |+++.| ||++++.+.+.+ +-..+|||+|||+++
T Consensus 477 g~~p~~~~g--y~~~~~~~~~~~-~~~~~g~y~TGDlg~ 512 (663)
T 1ry2_A 477 AAWPSFART--IWKNHDRYLDTY-LNPYPGYYFTGDGAA 512 (663)
T ss_dssp SCCTTSCCE--ETTCHHHHHHHH-TSSSTTSEEEEEEEE
T ss_pred cCCCchhcc--cccChHHHHHhh-hcCCCCEEEcCCEEE
Confidence 9 589999 999999887765 112367999999874
No 25
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=1.7e-58 Score=464.46 Aligned_cols=380 Identities=22% Similarity=0.283 Sum_probs=316.8
Q ss_pred CchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEE
Q 013850 27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106 (435)
Q Consensus 27 ~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~ 106 (435)
.|+.++|.++++ |+++|+++. ++.+||+||.++++++|+.|++.|+++||+|+|+++|++++++++|||+++|+++
T Consensus 27 ~~l~~~~~~~a~--pd~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~aG~~~ 102 (617)
T 3rg2_A 27 LPLTDILTRHAA--SDSIAVIDG--ERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAP 102 (617)
T ss_dssp CCTTHHHHTTTT--CCSEEEEET--TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEE
T ss_pred CCHHHHHHHhhC--CCCeEEecC--CceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhcCeEE
Confidence 899999999987 999999987 4899999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHHHHHhcCCeEEEEccccH--------HHHhh-cC-CCcEEeccCCcccccccccccccccchhhhhh
Q 013850 107 STANPVYTVSELSKQVKDSNPKLVITVPELW--------DKVKD-LN-LPAVLLGSKDKVSSSGLISRSSKIVSFHDLIE 176 (435)
Q Consensus 107 v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~--------~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (435)
+|+++.++.+++.++++.+++++++++.... ..+.. .. ...+.+... .....+.+...
T Consensus 103 vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~ 170 (617)
T 3rg2_A 103 VLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLND------------SGEHNLQDAIN 170 (617)
T ss_dssp EEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETC------------CSTTBHHHHHH
T ss_pred ccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeeccc------------ccccchhhhhc
Confidence 9999999999999999999999999987643 11111 11 112222111 01112333333
Q ss_pred hcCCCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHH-HHH
Q 013850 177 LSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSV-ILY 255 (435)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~-~~~ 255 (435)
... .........++++++|+|||||||.||+|+++|+++.+.+........+... +++++.+|++|.+++.. .++
T Consensus 171 ~~~--~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~--~~~l~~~p~~~~~~~~~~~~~ 246 (617)
T 3rg2_A 171 HPA--EDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQ--TRYLCAIPAAHNYAMSSPGSL 246 (617)
T ss_dssp SCC--SSCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTT--CEEEECSCTTSHHHHHSSHHH
T ss_pred ccc--cccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCc--ceEEEeccchhhhhhhHHHHH
Confidence 222 2333445678999999999999999999999999999988776666555443 99999999999988854 588
Q ss_pred hhhhcCcEEEecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccC--CCCcceeEEEecCCCCcHHHHHHHHhhC
Q 013850 256 DQLQKGNCVVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRK--FDISSLKLVGSGAAPLGKELMEDCQKNI 333 (435)
Q Consensus 256 ~~l~~G~~i~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~--~~l~~lr~i~~gG~~l~~~~~~~~~~~~ 333 (435)
.++..|+++++.+.+++..+++.++++++|++.++|+++..|++...... ..+++||.+++||+++++++.++|.+.+
T Consensus 247 ~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~ 326 (617)
T 3rg2_A 247 GVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEI 326 (617)
T ss_dssp HHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHHHHHHHHHT
T ss_pred HHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHHHHHHHHHh
Confidence 99999999999998999999999999999999999999999988654332 3689999999999999999999999999
Q ss_pred CCCeeecCcCcccccccccccCCCCCCcCCCCccccc-CCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCcc
Q 013850 334 PGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLV-AGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFV 412 (435)
Q Consensus 334 ~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~ 412 (435)
+ +++++.||+||++....... ........++|.|+ ++++++|+| +++++++.|++|||+|+|++++.| ||++|+
T Consensus 327 ~-~~~~~~YG~tE~~~~~~~~~-~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~G--Y~~~p~ 401 (617)
T 3rg2_A 327 G-CQLQQVFGMAEGLVNYTRLD-DSAEKIIHTQGYPMCPDDEVWVAD-AEGNPLPQGEVGRLMTRGPYTFRG--YYKSPQ 401 (617)
T ss_dssp C-SEEEEEEEETTEEEEECCTT-SCHHHHHHCCCEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECSSSCSC--CTTCHH
T ss_pred C-CcEEEEeccCcceeecccCC-CcccccccCCCccCCCCceEEEEC-CCCCCCCCCCceEEEecCccccch--hcCChh
Confidence 6 99999999999875544322 11123346789997 788999999 689999999999999999999999 999999
Q ss_pred cccccccccccCcceecCCCCC
Q 013850 413 FTLFLWGCEHTDSFIRGKDQQT 434 (435)
Q Consensus 413 ~~~~~~~~~~~~~~~~tgD~~~ 434 (435)
.|.+.| ..++||+|||+++
T Consensus 402 ~t~~~f---~~~~~yrTGDl~~ 420 (617)
T 3rg2_A 402 HNASAF---DANGFYCSGDLIS 420 (617)
T ss_dssp HHHHHB---CTTSCEEEEEEEE
T ss_pred hhhhcc---CCCCceecCceEE
Confidence 999988 3578999999874
No 26
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=6.8e-59 Score=466.43 Aligned_cols=388 Identities=22% Similarity=0.288 Sum_probs=314.6
Q ss_pred CchHHHHHhhcccCCCceeeeecC--CCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCc
Q 013850 27 FSMVHFLFRNSASYSSKLALIDAD--SDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGA 104 (435)
Q Consensus 27 ~tl~~~l~~~~~~~p~~~a~~~~~--~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~ 104 (435)
.|+.++|.++++++|+++|+++.+ .++.+||+||.++++++|+.|+++|+++||+|+++++|++++++++|||+++|+
T Consensus 11 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~ 90 (590)
T 3kxw_A 11 QSLVDVVRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGC 90 (590)
T ss_dssp SSHHHHHHHHHHHCTTSEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHhCCCCeEEEEEcCCeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHHhCc
Confidence 799999999999999999998643 237999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCC---HHHHHHHHHhcCCeEEEEccccHHHHhhcCCCcEEeccCCcccccccccccccccchhhhhhhcCCC
Q 013850 105 IASTANPVYT---VSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSV 181 (435)
Q Consensus 105 ~~v~i~~~~~---~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (435)
+++|++|.++ .+++.++++.+++++++++.+....+........... ........+.+.....
T Consensus 91 ~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~-- 156 (590)
T 3kxw_A 91 IAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKF------------LKIPAIALESIELNRS-- 156 (590)
T ss_dssp EEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEE------------TTEEEEEGGGCCGGGG--
T ss_pred EEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcccc------------cccceeechhcccccc--
Confidence 9999999884 5788999999999999999887766543321000000 0000011111111111
Q ss_pred CCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhcC
Q 013850 182 TDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKG 261 (435)
Q Consensus 182 ~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G 261 (435)
.........++++++|+|||||||.||+|.++|+++.+.+........+.. +|++++.+|++|.+|+...++.++..|
T Consensus 157 ~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~--~d~~l~~~p~~h~~g~~~~~~~~l~~G 234 (590)
T 3kxw_A 157 SSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMND--ETIIFSWLPPHHDMGLIGCILTPIYGG 234 (590)
T ss_dssp GGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCT--TCEEEECSCTTSHHHHHTTTHHHHHHT
T ss_pred ccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCC--cCeEEEecCCCcchhhHHHHHHHHhcC
Confidence 122344567899999999999999999999999999999887766555543 399999999999999975589999999
Q ss_pred cEEEecCCC----CHHHHHHHHHhcCceEEEecHHHHHHHHhc---ccccCCCCcceeEEEecCCCCcHHHHHHHHhhCC
Q 013850 262 NCVVSMGKF----DIEMALRAIEKYRVTVWWVVPPIILALAKN---SLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIP 334 (435)
Q Consensus 262 ~~i~~~~~~----~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~---~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~ 334 (435)
+++++.+.+ ++..+++.++++++|++.++|.++..+++. ......++++||.+++||+++++++.++|.+.|+
T Consensus 235 ~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~ 314 (590)
T 3kxw_A 235 IQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEHFYQAFK 314 (590)
T ss_dssp CEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCCCHHHHHHHHHHHG
T ss_pred ceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCCCHHHHHHHHHHHH
Confidence 999999865 789999999999999999999999998875 3344567899999999999999999999999874
Q ss_pred -----CCeeecCcCcccccccccccCCC-------------------------CCCcCCCCcccccCCcEEEEEeCCCCc
Q 013850 335 -----GATIFQGYGMTETCAPISLENPL-------------------------VGVRRSGSAGTLVAGVEAQIVSVDTLK 384 (435)
Q Consensus 335 -----~~~~~~~yG~tE~~~~~~~~~~~-------------------------~~~~~~~~~G~~~~~~~~~i~d~~~~~ 384 (435)
+.++++.||+||++++++..... ....+..++|+|+++ ++|+|+++++
T Consensus 315 ~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~~~~ 392 (590)
T 3kxw_A 315 EFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDPDTLI 392 (590)
T ss_dssp GGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEECTTTCC
T ss_pred HcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEcCCCCc
Confidence 35899999999999877653321 112345688999998 8889987799
Q ss_pred cCCCCCceeEEEeCCCccccccccCCccccccccc--cccc-Cc--ceecCCCCC
Q 013850 385 PLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWG--CEHT-DS--FIRGKDQQT 434 (435)
Q Consensus 385 ~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~--~~~~-~~--~~~tgD~~~ 434 (435)
++++|++|||+|+||+++.| ||++|+.|++.|. .++. +| ||+|||+++
T Consensus 393 ~~~~g~~GEl~v~g~~v~~G--Y~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~ 445 (590)
T 3kxw_A 393 PCDFDQVGEIWVQSNSVAKG--YWNQPEETRHAFAGKIKDDERSAIYLRTGDLGF 445 (590)
T ss_dssp BCCTTBCEEEEEESTTSCCC--BTTCHHHHHHHHCBCCTTC---CCBEEEEEEEE
T ss_pred CCCCCCEEEEEEeCCccccc--ccCChhHHHHHHhccccCCCCCCcEEecCcEEE
Confidence 99999999999999999999 9999999999882 1111 13 999999874
No 27
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=1.6e-57 Score=453.33 Aligned_cols=380 Identities=17% Similarity=0.157 Sum_probs=305.9
Q ss_pred CCchHHHHHhhcccCCCceeeeecCC--------CcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHH
Q 013850 26 SFSMVHFLFRNSASYSSKLALIDADS--------DESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFL 97 (435)
Q Consensus 26 ~~tl~~~l~~~~~~~p~~~a~~~~~~--------~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~l 97 (435)
++|+.++|.++++++|+++|+++.+. ++.+||+||.++++++|+.|++.|+ +||+|+++++|++++++++|
T Consensus 19 ~~tl~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~~~~l 97 (562)
T 3ite_A 19 TVPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAFAIIV 97 (562)
T ss_dssp CCCTTHHHHHHHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHHHHHH
Confidence 38999999999999999999986531 2689999999999999999999999 79999999999999999999
Q ss_pred HHHHcCcEEEecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcCCCcEEeccCCcccccccccccccccchhhhhhh
Q 013850 98 GVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIEL 177 (435)
Q Consensus 98 A~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (435)
||+++|++++|+++.++.+++.++++.++++++|++++....+.... ...++... ...+.+....
T Consensus 98 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~--------------~~~~~~~~~~ 162 (562)
T 3ite_A 98 GIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVELPP-ETKVLDTK--------------NQSFIENLST 162 (562)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCCCCT-TCEEEETT--------------CHHHHHHHHH
T ss_pred HHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccccCc-cceeeccc--------------chhhhhhccc
Confidence 99999999999999999999999999999999999876544332111 11111111 1122223322
Q ss_pred cCCCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhh------hccCCCcEEEecchHHHHHHHH
Q 013850 178 SGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQE------LVGELDHVVLCVLPMFHVFGLS 251 (435)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~------~~~~~~d~~l~~~~l~~~~g~~ 251 (435)
.. .........++++++|+|||||||.||+|+++|+++.+.......... ......+++++..++.|..++.
T Consensus 163 ~~--~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (562)
T 3ite_A 163 QD--TSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIG 240 (562)
T ss_dssp SC--CSCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHH
T ss_pred cc--ccccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHH
Confidence 22 222334556789999999999999999999999999887766544322 1122338999999999988874
Q ss_pred HHHHhhhhcCcEEEecCCCC-HHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHH
Q 013850 252 VILYDQLQKGNCVVSMGKFD-IEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQ 330 (435)
Q Consensus 252 ~~~~~~l~~G~~i~~~~~~~-~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~ 330 (435)
.++.++..|+++++.+.+. +..+++.++++++|++.++|+++..+... ..++++||.+++||+++++++.++|+
T Consensus 241 -~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~----~~~~~~lr~~~~gG~~l~~~~~~~~~ 315 (562)
T 3ite_A 241 -EMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV----PEDAPHLVYLGVGGEKMTPRTQQIWS 315 (562)
T ss_dssp -HHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC----GGGSTTCCEEEEESSCCCHHHHHHHT
T ss_pred -HHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC----ccccCceEEEEEecCCCCHHHHHHHh
Confidence 7888999999999987653 57788999999999999999998877543 34688999999999999999999999
Q ss_pred hhCCCCeeecCcCcccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCC
Q 013850 331 KNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINF 410 (435)
Q Consensus 331 ~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~ 410 (435)
+.++ +++++.||+||++..++...... .....++|+|+++++++|+|+++++++++|+.|||+++|++++.| ||++
T Consensus 316 ~~~~-~~~~~~YG~TE~~~~~~~~~~~~-~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~G--Y~~~ 391 (562)
T 3ite_A 316 SSDR-VALVNVYGPTEVTIGCSAGRILP-DSDTRCIGHPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANG--YLNR 391 (562)
T ss_dssp TCSS-CEEEEEECCGGGCSCSEEEECCT-TSCTTEEEEECTTCEEEEECTTSSCBCCTTSCEEEEEESTTSCCE--ESSC
T ss_pred hCCC-cEEEEeeccchheeeeeeeeecC-CCCCccccccCCCCeEEEEeCCCCCCCCCCCceEEEEeccccchh--hCCC
Confidence 9875 99999999999987666543332 445678999999999999998889999999999999999999999 9999
Q ss_pred cccccccccccccCcceecCCCCC
Q 013850 411 FVFTLFLWGCEHTDSFIRGKDQQT 434 (435)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~tgD~~~ 434 (435)
|+.|...+ .+.++||+|||+++
T Consensus 392 p~~t~~~~--~~g~~w~~TGDlg~ 413 (562)
T 3ite_A 392 PDAKGFCD--INGRKMYRTGDIVR 413 (562)
T ss_dssp TTCCSEEE--ETTEEEEEEEEEEE
T ss_pred cccccccc--CCCCEEEecCCEEE
Confidence 99987654 22345999999874
No 28
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=4.1e-58 Score=451.46 Aligned_cols=381 Identities=22% Similarity=0.301 Sum_probs=299.6
Q ss_pred CchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEE
Q 013850 27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106 (435)
Q Consensus 27 ~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~ 106 (435)
+||.++|.++++++|+++|+++. ++++||+||.++++++|+.|++. +||+|+|+++|++++++++|||+++|+++
T Consensus 1 mtl~~~l~~~a~~~pd~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~~~Gav~ 75 (501)
T 3ipl_A 1 MSLDFWLYKQAQQNGHHIAITDG--QESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACWLANIEI 75 (501)
T ss_dssp --CCCHHHHHHHHHTTSEEEECS--SCEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHHHTTCEE
T ss_pred CCHHHHHHHHHHhcCCceEEEeC--CcEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHHHcCCEE
Confidence 47889999999999999999987 48999999999999999999986 89999999999999999999999999999
Q ss_pred EecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcC--CCcEEeccCCcccccccccccccc-cchhhhhhhcCCCCC
Q 013850 107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLN--LPAVLLGSKDKVSSSGLISRSSKI-VSFHDLIELSGSVTD 183 (435)
Q Consensus 107 v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 183 (435)
+|+++.++.+++.++++.++++++|++.+......... ........................ ...+....... ...
T Consensus 76 vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 154 (501)
T 3ipl_A 76 AMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPKES-PSN 154 (501)
T ss_dssp EECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEETTC--------------------------------CC-HHH
T ss_pred EecCccCCHHHHHHHHHhcCCCEEEEccccccccccccccccceeeeeecccccccccccccccccchhhccccCC-ccc
Confidence 99999999999999999999999999976544332111 000000000000000000000000 00000000000 001
Q ss_pred CCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhcCcE
Q 013850 184 IPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNC 263 (435)
Q Consensus 184 ~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~~ 263 (435)
.......++++++|+|||||||.||+|.++|+++.+..........+.. +|++++.+|++|.+|+. .++.++..|++
T Consensus 155 ~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~--~d~~l~~~p~~~~~g~~-~~~~~l~~G~~ 231 (501)
T 3ipl_A 155 ILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDR--DTNWLSVLPIYHISGLS-VLLRAVIEGFT 231 (501)
T ss_dssp HTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCT--TCEEEECSCTTSHHHHH-HHHHHHHHTCE
T ss_pred ccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCc--cCEEEEeCcHHHHHHHH-HHHHHHHcCce
Confidence 1233467899999999999999999999999999998777665554433 39999999999999996 68899999999
Q ss_pred EEecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCeeecCcC
Q 013850 264 VVSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYG 343 (435)
Q Consensus 264 i~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~yG 343 (435)
+++.+.+++..+++.++++++|++.++|+++..|.+...... .+||.+++||+++++++.+++.+. ++++++.||
T Consensus 232 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---~~lr~i~~gG~~l~~~~~~~~~~~--~~~~~~~YG 306 (501)
T 3ipl_A 232 VRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEP---YNLQKILLGGAKLSATMIETALQY--NLPIYNSFG 306 (501)
T ss_dssp EEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSC---TTCCEEEECSSCCCHHHHHHHHHT--TCCEEEEEE
T ss_pred EEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCc---CcccEEEEeCCCCCHHHHHHHHHh--CCCEecccc
Confidence 999999999999999999999999999999999998765433 289999999999999999999884 599999999
Q ss_pred cccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCccccccccccccc
Q 013850 344 MTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEHT 423 (435)
Q Consensus 344 ~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~~~~~ 423 (435)
+||+++.+..........+.+++|+|+++++++|+|++ +++.|||+++|++++.| ||++++.+.. | .
T Consensus 307 ~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~------~~~~GEl~v~g~~~~~g--Y~~~~~~t~~-~----~ 373 (501)
T 3ipl_A 307 MTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPN------KEGHGELMIKGANVMNG--YLYPTDLTGT-F----E 373 (501)
T ss_dssp EGGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEESCC------SSCCEEEEEESTTSCSC--CSBSTTCCCS-E----E
T ss_pred ccccccceeecCccccccCCCCCCCCCCCcEEEEecCC------CCCccEEEEeccchhhh--hCcChhhcch-h----c
Confidence 99998766554433324567899999999999999964 46789999999999999 9999999987 5 4
Q ss_pred CcceecCCCCC
Q 013850 424 DSFIRGKDQQT 434 (435)
Q Consensus 424 ~~~~~tgD~~~ 434 (435)
+|||+|||+++
T Consensus 374 ~g~~~TGDl~~ 384 (501)
T 3ipl_A 374 NGYFNTGDIAE 384 (501)
T ss_dssp TTEEEEEEEEE
T ss_pred CCceecCCEEE
Confidence 78999999874
No 29
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=3e-57 Score=453.47 Aligned_cols=378 Identities=21% Similarity=0.243 Sum_probs=312.2
Q ss_pred CchHHHHHhhcccCCCceeeeecC-CCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcE
Q 013850 27 FSMVHFLFRNSASYSSKLALIDAD-SDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI 105 (435)
Q Consensus 27 ~tl~~~l~~~~~~~p~~~a~~~~~-~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~ 105 (435)
.|+.++|.++++.+|+.+++.+.. .++++||+||.++++++|+.|+++|+++||+|+++++|++++++++|||+++|++
T Consensus 21 ~tl~~~l~~~a~~~p~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 100 (576)
T 3gqw_A 21 PTLVDALDYAALSSAGMNFYDRRCQLEDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFVEAFFACQYAGLV 100 (576)
T ss_dssp SSHHHHHHHHTTSSCEEEEECTTSCEEEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHHHHHHHHHHHHTTCE
T ss_pred CcHHHHHHHHhhCCCCeEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCe
Confidence 799999999999999998886543 2378999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCC-------HHHHHHHHHhcCCeEEEEccccHHHHhhcCC---CcEEeccCCcccccccccccccccchhhhh
Q 013850 106 ASTANPVYT-------VSELSKQVKDSNPKLVITVPELWDKVKDLNL---PAVLLGSKDKVSSSGLISRSSKIVSFHDLI 175 (435)
Q Consensus 106 ~v~i~~~~~-------~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (435)
++|+++.++ .+++.++++.++++++|++++....+..... ...++ ......
T Consensus 101 ~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~ 161 (576)
T 3gqw_A 101 AVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLVNAATHDNPELHVL-------------------SHAWFK 161 (576)
T ss_dssp EEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGHHHHHHHGGGCTTCEEE-------------------EHHHHH
T ss_pred EeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHHHHHHHhhccCCcceec-------------------chhhhh
Confidence 999999998 7899999999999999999887766554321 11111 001011
Q ss_pred hhcCCCCCCCCCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhh-hhhccCCCcEEEecchHHHHHHHHHHH
Q 013850 176 ELSGSVTDIPDVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAH-QELVGELDHVVLCVLPMFHVFGLSVIL 254 (435)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~-~~~~~~~~d~~l~~~~l~~~~g~~~~~ 254 (435)
.... .........++++++|+|||||||.||+|.++|+++.+.+...... ..+ ..+|++++.+|++|.+|+...+
T Consensus 162 ~~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~--~~~d~~l~~~p~~h~~g~~~~~ 237 (576)
T 3gqw_A 162 ALPE--ADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGIKL--RPGDRCVSWLPFYHDMGLVGFL 237 (576)
T ss_dssp TSCC--CCCCCCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTSCC--CTTCCEEECCCTTSHHHHHHHT
T ss_pred cccc--cccccCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhcccCC--CCcceEEEcCCccccccHHHHH
Confidence 1111 2223345578999999999999999999999999998876654332 222 3349999999999999997678
Q ss_pred HhhhhcCcEEEecCC----CCHHHHHHHHHhcCceEEEecHHHHHHHHhccc---ccCCCCcceeEEEecCCCCcHHHHH
Q 013850 255 YDQLQKGNCVVSMGK----FDIEMALRAIEKYRVTVWWVVPPIILALAKNSL---VRKFDISSLKLVGSGAAPLGKELME 327 (435)
Q Consensus 255 ~~~l~~G~~i~~~~~----~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~---~~~~~l~~lr~i~~gG~~l~~~~~~ 327 (435)
+.++..|+++++... +++..+++.++++++|++.++|+++..+.+... ....++++||.+++||+++++++.+
T Consensus 238 ~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~ 317 (576)
T 3gqw_A 238 LTPVATQLSVDYLRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKDLAELDLSCWRVAGIGAEPISAEQLH 317 (576)
T ss_dssp HHHHHTTCCEEECCHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHHHHTTCCCTTCCEEEECSSCCCHHHHH
T ss_pred HHHHhcCceEEEcchhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhcccccccCChhhhHhhhccCccCCHHHHH
Confidence 888999999998864 588999999999999999999999988876432 2455789999999999999999999
Q ss_pred HHHhhCC-----CCeeecCcCcccccccccccCCCCC--------------------------CcCCCCcccccCCcEEE
Q 013850 328 DCQKNIP-----GATIFQGYGMTETCAPISLENPLVG--------------------------VRRSGSAGTLVAGVEAQ 376 (435)
Q Consensus 328 ~~~~~~~-----~~~~~~~yG~tE~~~~~~~~~~~~~--------------------------~~~~~~~G~~~~~~~~~ 376 (435)
+|.+.++ +.++++.||+||++.+++....... .....++|+|+++++++
T Consensus 318 ~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~ 397 (576)
T 3gqw_A 318 QFAECFRQVNFDNKTFMPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIE 397 (576)
T ss_dssp HHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCEECTTCEEE
T ss_pred HHHHHHhhcCCCcccccccCCcccccceeecccccCCccccccchhhhcccCcccccCccccCccceeecCCcCCCCeEE
Confidence 9999874 5899999999999987765432210 01123789999999999
Q ss_pred EEeCCCCccCCCCCceeEEEeCCCccccccccCCcccccccccccccCcceecCCCCC
Q 013850 377 IVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT 434 (435)
Q Consensus 377 i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~tgD~~~ 434 (435)
|+| ++++++++|++|||+++|++++.| ||++++.+.+.+ .+|||+|||+++
T Consensus 398 i~d-~~g~~~~~g~~GEl~v~g~~~~~g--Y~~~~~~~~~~~----~~g~~~TGDl~~ 448 (576)
T 3gqw_A 398 IRN-EAGMPVAERVVGHICISGPSLMSG--YFGDQVSQDEIA----ATGWLDTGDLGY 448 (576)
T ss_dssp EEC-TTSCBCCTTBCEEEEEESTTSCCC--BTTCHHHHHHHH----HHSCEEEEEEEE
T ss_pred EEC-CCCCCCCCCCeEEEEEeCcccccc--ccCCcccccccc----CCCeeeccceEE
Confidence 999 799999999999999999999999 999999887765 478999999864
No 30
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=5e-58 Score=450.28 Aligned_cols=363 Identities=25% Similarity=0.347 Sum_probs=297.9
Q ss_pred CchHHHHHhhcccCCC-ceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcE
Q 013850 27 FSMVHFLFRNSASYSS-KLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI 105 (435)
Q Consensus 27 ~tl~~~l~~~~~~~p~-~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~ 105 (435)
.|+.+.|.++++++|+ ++|+++. ++.+||+||.++++++|+.|+ .|++|+++++|++++++++|||+++|++
T Consensus 22 ~tl~~~l~~~a~~~p~d~~Al~~~--~~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~la~~~~Ga~ 94 (505)
T 3nyq_A 22 SSLFPALSPAPTGAPADRPALRFG--ERSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAVVAALLAGVA 94 (505)
T ss_dssp --CCTTTSSCCCSGGGGSEEEEET--TEEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHHHHHHHHTCC
T ss_pred chhHHHHHHHHHhCCCCCeEEEEC--CeeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHHHHHHHhCCE
Confidence 6899999999999998 9999987 489999999999999999774 4889999999999999999999999999
Q ss_pred EEecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcCCCcEEeccCCcccccccccccccccchhhhhhhcCCCCCCC
Q 013850 106 ASTANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIP 185 (435)
Q Consensus 106 ~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (435)
++|++|.++.+++.++++.++++++|++.+... .........+..+ .... ...+
T Consensus 95 ~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~--~~~~~~~~~~~~~----------------------~~~~--~~~~ 148 (505)
T 3nyq_A 95 AVPLNPKSGDKELAHILSDSAPSLVLAPPDAEL--PPALGALERVDVD----------------------VRAR--GAVP 148 (505)
T ss_dssp EEEECTTCCHHHHHHHHHHHCCSEEEECTTCCC--CGGGTTSEEEECC----------------------TTCC--CCCC
T ss_pred EEEcCCCCCHHHHHHHHHHCCCCEEEECCcccc--chhhccccccccc----------------------cccc--cCCC
Confidence 999999999999999999999999999865210 0000000000000 0000 1223
Q ss_pred CCCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhcCcEEE
Q 013850 186 DVSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV 265 (435)
Q Consensus 186 ~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~~i~ 265 (435)
.....++++++|+|||||||.||+|.++|+++.+........+.+... |++++.+|++|.+|+...++.++..|++++
T Consensus 149 ~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~--d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~ 226 (505)
T 3nyq_A 149 EDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGE--DVLVQGLPLFHVHGLVLGILGPLRRGGSVR 226 (505)
T ss_dssp CCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTT--CEEEECCCTTSHHHHTTTTHHHHHHTCEEE
T ss_pred CCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCC--cEEEEeccHHHHHHHHHHHHHHHhcCCEEE
Confidence 345678999999999999999999999999999988776666655443 999999999999998767899999999999
Q ss_pred ecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhccccc---CCCCcceeEEEecCCCCcHHHHHHHHhhCCCCeeecCc
Q 013850 266 SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVR---KFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGY 342 (435)
Q Consensus 266 ~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~---~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~y 342 (435)
+.+.+++..+++.+ ++++|+++++|+++..|++..... ...++++|.+++||+++++++.+++.+.++ +++++.|
T Consensus 227 ~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~-~~~~~~Y 304 (505)
T 3nyq_A 227 HLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAATG-RRVIERY 304 (505)
T ss_dssp ECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHHHHHHHS-CCCEEEE
T ss_pred ECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHHHHHHhcC-Ceeeccc
Confidence 99999999999999 889999999999999998743221 235778999999999999999999999886 9999999
Q ss_pred CcccccccccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCC---CCceeEEEeCCCccccccccCCccccccccc
Q 013850 343 GMTETCAPISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPP---NQLGEIWVRGPNVTPGIVYINFFVFTLFLWG 419 (435)
Q Consensus 343 G~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~---g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~ 419 (435)
|+||++..+...... ..+.+++|+|+++++++|+| +++++++. |++|||+++|++++.| ||++|+.|.+.|
T Consensus 305 G~TE~~~~~~~~~~~--~~~~~~vG~p~~~~~~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~G--Y~~~~~~t~~~f- 378 (505)
T 3nyq_A 305 GMTETLMNTSVRADG--EPRAGTVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTE--YLNRPDATAAAF- 378 (505)
T ss_dssp EETTTEEEEECCTTS--CCCTTCCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCE--ETTCHHHHHHTB-
T ss_pred chhhcccccccCCCC--CCCCCCcccCCCCCEEEEEC-CCCCCcccCCCCceEEEEEecCchhhh--hCCChhHhhhhh-
Confidence 999998766654333 55678999999999999999 57888876 8999999999999999 999999999987
Q ss_pred ccccCcceecCCCCC
Q 013850 420 CEHTDSFIRGKDQQT 434 (435)
Q Consensus 420 ~~~~~~~~~tgD~~~ 434 (435)
..++||+|||+++
T Consensus 379 --~~~g~y~TGDl~~ 391 (505)
T 3nyq_A 379 --TEDGFFRTGDMAV 391 (505)
T ss_dssp --CTTSCEEEEEEEE
T ss_pred --cCCCCCccCCeEE
Confidence 3578999999874
No 31
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=3.4e-56 Score=481.16 Aligned_cols=376 Identities=18% Similarity=0.221 Sum_probs=311.9
Q ss_pred CchHHHHHhhcccCCCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEE
Q 013850 27 FSMVHFLFRNSASYSSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIA 106 (435)
Q Consensus 27 ~tl~~~l~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~ 106 (435)
.++.++|.++++++|+++|+++. ++.+||+||.++++++|+.|++.|+++|++|+|+++|++++++++|||+++|+++
T Consensus 464 ~~l~~~~~~~~~~~p~~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~lailkaG~~~ 541 (1304)
T 2vsq_A 464 KPLTYWFKEAVNANPDAPALTYS--GQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAY 541 (1304)
T ss_dssp CCHHHHHHHHHHHCTTSEEEESS--SCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHTTCEE
T ss_pred CCHHHHHHHHHHhCCCCeEEEEC--CeeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHHHHHHCCEE
Confidence 68999999999999999999987 4899999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHhhcCCCcEEeccCCcccccccccccccccchhhhhhhcCCCCCCCC
Q 013850 107 STANPVYTVSELSKQVKDSNPKLVITVPELWDKVKDLNLPAVLLGSKDKVSSSGLISRSSKIVSFHDLIELSGSVTDIPD 186 (435)
Q Consensus 107 v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (435)
+|++|.++.+++.++++.+++++++++......+.........+..+.. ..... . ...+.
T Consensus 542 vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~--~--~~~~~ 601 (1304)
T 2vsq_A 542 LPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELPYTGTTLFIDDQ----------------TRFEE--Q--ASDPA 601 (1304)
T ss_dssp EECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTTCCCCSEEEESSCG----------------GGGGS--C--SSCCC
T ss_pred EEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhccCCCCcEEEeccc----------------ccccc--c--cCCCC
Confidence 9999999999999999999999999998765443322211111111100 00000 1 12223
Q ss_pred CCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhcCcEEEe
Q 013850 187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVS 266 (435)
Q Consensus 187 ~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~~i~~ 266 (435)
....++++++|+|||||||.||||+++|+++.+. ...... +....+|+++...|++|..+.+ .++.++..|+++++
T Consensus 602 ~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~--~~~~~~d~~l~~~~~~fd~~~~-~~~~~l~~G~~l~~ 677 (1304)
T 2vsq_A 602 TAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDY--MAFSDQDTFLSVSNYAFDAFTF-DFYASMLNAARLII 677 (1304)
T ss_dssp CCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCS--SCCCTTCEEEECSCTTSTHHHH-HHHHHHTTTCEEEE
T ss_pred CCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHh--cCCCCCCEEEEECCccHHHHHH-HHHHHHHcCCEEEE
Confidence 4567899999999999999999999999999865 221111 2223349999999999988874 88999999999999
Q ss_pred cCC---CCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCeeecCcC
Q 013850 267 MGK---FDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYG 343 (435)
Q Consensus 267 ~~~---~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~yG 343 (435)
.+. .++..+++.++++++|++.++|+++..|.+.. ...+++||.+++|||+++.++.++|.+.+++.+++|.||
T Consensus 678 ~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~---~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG 754 (1304)
T 2vsq_A 678 ADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAG---EDWMKGLRCILFGGERASVPHVRKALRIMGPGKLINCYG 754 (1304)
T ss_dssp CCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHC---SHHHHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEEC
T ss_pred CChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhc---hhcCCCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEC
Confidence 864 68999999999999999999999999998753 224678999999999999999999999988789999999
Q ss_pred cccccccccccCCCC--CCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCcccccccc---
Q 013850 344 MTETCAPISLENPLV--GVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLW--- 418 (435)
Q Consensus 344 ~tE~~~~~~~~~~~~--~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~--- 418 (435)
+||++..++...... ......++|+|++|++++|+| +++++++.|++|||+|+|++++.| ||++|+.|.++|
T Consensus 755 ~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~G--Y~~~p~~T~~~f~~~ 831 (1304)
T 2vsq_A 755 PTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILN-EQSQLQPFGAVGELCISGMGVSKG--YVNRADLTKEKFIEN 831 (1304)
T ss_dssp CGGGSSCSEEEECCCCCSSCSSCCCBEECTTEEEEEEC-TTSCBCCTTCCEEEEEEETTCCCC--BTTCHHHHHHHEEEC
T ss_pred hhHHhHHheeeeccCccccCCCCCCceeeCCCEEEEEC-CCcCCCCCCCceEEEEeccccCcc--ccCCcccchhhhccC
Confidence 999987766543221 133456899999999999999 689999999999999999999999 999999999988
Q ss_pred cccccCcceecCCCCC
Q 013850 419 GCEHTDSFIRGKDQQT 434 (435)
Q Consensus 419 ~~~~~~~~~~tgD~~~ 434 (435)
.+...++||||||+++
T Consensus 832 p~~~g~~~yrTGDl~~ 847 (1304)
T 2vsq_A 832 PFKPGETLYRTGDLAR 847 (1304)
T ss_dssp TTSTTCEEEEEEEEEE
T ss_pred CCCCCCeeEecCCeEE
Confidence 2223457999999974
No 32
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=3e-33 Score=269.72 Aligned_cols=206 Identities=18% Similarity=0.219 Sum_probs=172.6
Q ss_pred CCCC-CCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhc-cCCCcEEEecchHHHHHHHHHHHHhhhhcCcEEE
Q 013850 188 SVKQ-TDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELV-GELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVV 265 (435)
Q Consensus 188 ~~~~-~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~-~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~~i~ 265 (435)
...+ +++++|+|||||||.||+|.++|+++.+............ ...+|++++..|+.|..+.+..++.++..|++++
T Consensus 81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~ 160 (436)
T 3qov_A 81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTV 160 (436)
T ss_dssp CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEE
T ss_pred cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEE
Confidence 3456 8999999999999999999999999987765554333221 2334999999999777776667888999999999
Q ss_pred ecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCC--CcceeEEEecCCCCcHHHHHHHHhhCCCCeeecCcC
Q 013850 266 SMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFD--ISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYG 343 (435)
Q Consensus 266 ~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~--l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~yG 343 (435)
+.+.+++..+++.|+++++|++.++|+++..|++.......+ +++||.+++||+++++++.+++++.|+ +++++.||
T Consensus 161 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g-~~v~~~YG 239 (436)
T 3qov_A 161 PAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERMLN-VKAYNSFG 239 (436)
T ss_dssp CCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHHT-SEEEEEEE
T ss_pred eCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHhC-ccEEecCc
Confidence 998889999999999999999999999999999876555444 789999999999999999999999995 99999999
Q ss_pred ccccccc-ccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCC
Q 013850 344 MTETCAP-ISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGP 399 (435)
Q Consensus 344 ~tE~~~~-~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~ 399 (435)
+||+++. +..... .....+.+.++++++|+|+++++++++|+.|||+++|.
T Consensus 240 ~TE~~~~~~~~~~~-----~~~g~~~~~~~~~v~i~d~~~g~~~~~g~~Gel~v~~~ 291 (436)
T 3qov_A 240 MTEMNGPGVAFECQ-----EQNGMHFWEDCYLVEIIDPETGEPVPEGEIGELVLTTL 291 (436)
T ss_dssp EGGGTEEEEEEECT-----TCSSEEECTTTEEEEEECTTTCSBCSTTCCEEEEEEES
T ss_pred chhhcCCeeEEecC-----CCCeeEEccCceEEEEEECCCCCCCCCCCceEEEEecc
Confidence 9999654 333321 12336777889999999988999999999999999984
No 33
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.98 E-value=2.1e-32 Score=257.88 Aligned_cols=220 Identities=15% Similarity=0.079 Sum_probs=176.5
Q ss_pred CCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhcc-CCCcEEEecchH-HHHHHHHHHHHhhhhcCcEEE
Q 013850 188 SVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVG-ELDHVVLCVLPM-FHVFGLSVILYDQLQKGNCVV 265 (435)
Q Consensus 188 ~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~-~~~d~~l~~~~l-~~~~g~~~~~~~~l~~G~~i~ 265 (435)
...++++++|+|||||||.||+|.++|+++.....+......... ..+|++++..|+ +|..++. ..+.++..|+ ++
T Consensus 87 ~~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~-~~~~~~~~G~-~v 164 (369)
T 3hgu_A 87 GLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAI-NKERALRLGG-MF 164 (369)
T ss_dssp TSCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHH-HHHHHHHTTS-CE
T ss_pred cCCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHH-HHHHHHHcCC-EE
Confidence 457889999999999999999999999999988765432222222 233999999999 9999986 5566688898 67
Q ss_pred ecCCCCHH-----------------------HHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCc
Q 013850 266 SMGKFDIE-----------------------MALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLG 322 (435)
Q Consensus 266 ~~~~~~~~-----------------------~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~ 322 (435)
+...+++. .+++.++++++|++.++|+++..|++.......++++||.+++||++++
T Consensus 165 ~~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~ 244 (369)
T 3hgu_A 165 FSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELN 244 (369)
T ss_dssp ECCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESSCCC
T ss_pred ECccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCccCC
Confidence 77677777 8888999999999999999999999875544456789999999999999
Q ss_pred HHHHHHHH-hhCCCCeeecCcCcccccccccccCCCCCCcCCCCcccc------cCCcEEEEEeCCCCccCCCCCceeEE
Q 013850 323 KELMEDCQ-KNIPGATIFQGYGMTETCAPISLENPLVGVRRSGSAGTL------VAGVEAQIVSVDTLKPLPPNQLGEIW 395 (435)
Q Consensus 323 ~~~~~~~~-~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~G~~------~~~~~~~i~d~~~~~~~~~g~~Gei~ 395 (435)
+++.++++ +.||++++++.||+||+++++... + ..++|++ +++++++|+|+++++++++|+.|||+
T Consensus 245 ~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~-~------~~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~~GEl~ 317 (369)
T 3hgu_A 245 LDEIKFIASEILPDCEFSASYGSTSALGVSRSL-L------ITSESQQVIYDSFSPFITYDVVDSITAQTVEYGERGNVI 317 (369)
T ss_dssp HHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEEC-C------BCTTCSSCEEECCTTTEEEEEECTTTCSBCCTTCEEEEE
T ss_pred HHHHHHHHHHhCCCcEEEcccCchhhhcceecc-c------cccCCCcccccCCCCCeEEEEECCCCCcCCCCCCceEEE
Confidence 99999999 999779999999999988665321 1 1158888 99999999997799999999999999
Q ss_pred EeCC---CccccccccCCcccccccc
Q 013850 396 VRGP---NVTPGIVYINFFVFTLFLW 418 (435)
Q Consensus 396 v~g~---~~~~g~~y~~~~~~~~~~~ 418 (435)
|++. .++.+ |+..+..+....
T Consensus 318 vt~l~~~~~l~r--y~tgD~~~~~~~ 341 (369)
T 3hgu_A 318 VTHLSPWAFYPR--VAERDTAIRLPG 341 (369)
T ss_dssp EEEEETTEEEEE--EEEEEEEEEECC
T ss_pred EEEcCccccccc--ccCCceEEEecC
Confidence 9883 33556 877666655443
No 34
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=99.98 E-value=7.8e-32 Score=259.87 Aligned_cols=224 Identities=20% Similarity=0.217 Sum_probs=177.4
Q ss_pred CCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhh-hccCCCcEEEecchH-HHHHHHHHHHHhhhhcCcEE
Q 013850 187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQE-LVGELDHVVLCVLPM-FHVFGLSVILYDQLQKGNCV 264 (435)
Q Consensus 187 ~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~-~~~~~~d~~l~~~~l-~~~~g~~~~~~~~l~~G~~i 264 (435)
....++++++|+|||||||.||+|.++|+++............ .....+|++++..|+ +|..++. ..+.++..|+++
T Consensus 85 ~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~G~~~ 163 (437)
T 2y27_A 85 FAVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLG-AHYGAERAGLTV 163 (437)
T ss_dssp CSSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHH-HHHHHHHTTCEE
T ss_pred ccCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchH-HHHHHHHcCCEE
Confidence 3456789999999999999999999999998876554333221 212334999999998 6777664 678899999999
Q ss_pred EecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCC--CcceeEEEecCCCCcHHHHHHHHhhCCCCeeecCc
Q 013850 265 VSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFD--ISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGY 342 (435)
Q Consensus 265 ~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~--l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~y 342 (435)
++.+.+++..+++.|+++++|++.++|+++..|++.....+.+ +++||.+++||+++++++.+++++.|+ +++++.|
T Consensus 164 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g-~~v~~~Y 242 (437)
T 2y27_A 164 IPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRMG-IDAVDIY 242 (437)
T ss_dssp ECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHT-SEEEEEE
T ss_pred EeCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHHC-cCEEecC
Confidence 9988889999999999999999999999999998875444433 479999999999999999999999885 9999999
Q ss_pred Cccccccc-ccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCccccccccCCccccccccccc
Q 013850 343 GMTETCAP-ISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCE 421 (435)
Q Consensus 343 G~tE~~~~-~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~~~ 421 (435)
|+||+++. +...... ....++.+.+++.++|+|+++++++++|+.|||+++|.. .+.+
T Consensus 243 G~TE~~g~~~~~~~~~----~~~g~~~~~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~t--------------~~~~--- 301 (437)
T 2y27_A 243 GLSEVMGPGVASECVE----TKDGPTIWEDHFYPEIIDPETGEVLPDGELGELVFTSLT--------------KEAL--- 301 (437)
T ss_dssp EETTTTEEEEEECCTT----TCSSCEECTTTEEEEEECTTTCCBCCTTCCEEEEEEESS--------------CSSS---
T ss_pred CchhhcCCeeEEecCC----CCCceeEccCceEEEEEcCCCCCCCCCCCccEEEEecCC--------------cCCc---
Confidence 99998543 4433222 111256677899999999888999999999999999831 1122
Q ss_pred ccCcceecCCCCC
Q 013850 422 HTDSFIRGKDQQT 434 (435)
Q Consensus 422 ~~~~~~~tgD~~~ 434 (435)
.++||+|||+++
T Consensus 302 -~~~~y~TGDl~~ 313 (437)
T 2y27_A 302 -PIIRYRTRDLTR 313 (437)
T ss_dssp -CCCSEEEEEEEC
T ss_pred -hhheeecCCEEE
Confidence 256888888764
No 35
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=99.97 E-value=1.6e-31 Score=258.09 Aligned_cols=207 Identities=21% Similarity=0.231 Sum_probs=167.5
Q ss_pred CCCCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhh-hccCCCcEEEecchH-HHHHHHHHHHHhhhhcCcEE
Q 013850 187 VSVKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQE-LVGELDHVVLCVLPM-FHVFGLSVILYDQLQKGNCV 264 (435)
Q Consensus 187 ~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~-~~~~~~d~~l~~~~l-~~~~g~~~~~~~~l~~G~~i 264 (435)
....++++++|+|||||||.||+|.++|+++............ .....+|++++..|+ +|..++ ...+.++..|+++
T Consensus 87 ~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~-~~~~~~~~~G~~~ 165 (443)
T 2y4o_A 87 FAVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGL-GIHYGAERLGCMV 165 (443)
T ss_dssp CSSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHH-HHHHHHHHHTCEE
T ss_pred cCCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHH-HHHHHHHHcCCEE
Confidence 3456789999999999999999999999998876554433221 212334999999998 466666 4678889999999
Q ss_pred EecCCCCHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCC--CcceeEEEecCCCCcHHHHHHHHhhCCCCeeecCc
Q 013850 265 VSMGKFDIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFD--ISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGY 342 (435)
Q Consensus 265 ~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~--l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~y 342 (435)
++.+.+++..+++.|+++++|++.++|+++..|++.....+.+ +++||.+++||+++++++.+++++.|+ +++++.|
T Consensus 166 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g-~~v~~~Y 244 (443)
T 2y4o_A 166 VPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRVG-IDALDIY 244 (443)
T ss_dssp ECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHT-CEEEEEE
T ss_pred EECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHhC-cCEEecc
Confidence 9998889999999999999999999999999998875444433 479999999999999999999999985 9999999
Q ss_pred Cccccccc-ccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCC
Q 013850 343 GMTETCAP-ISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGP 399 (435)
Q Consensus 343 G~tE~~~~-~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~ 399 (435)
|+||+++. +...... .....+.+.+++.++|+|+++++++++|+.|||+++|.
T Consensus 245 G~TE~~g~~~~~~~~~----~~~g~~~~~~~~~~~i~d~~~g~~~~~G~~Gel~v~~~ 298 (443)
T 2y4o_A 245 GLSEVMGPGVACECVE----TKDGPVIWEDHFYPEIIDPVTGEVLPDGSQGELVFTSL 298 (443)
T ss_dssp EETTTTEEEEEEECTT----TCCSEEECTTTEEEEEECTTTCCBCCTTCCEEEEEEES
T ss_pred CchhhcCCeEEeccCC----CCCceEEccCCeEEEEEcCCCCCCCCCCCceEEEEeCC
Confidence 99997543 3333222 11125556789999999988899999999999999983
No 36
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=99.97 E-value=1.1e-31 Score=251.13 Aligned_cols=193 Identities=19% Similarity=0.227 Sum_probs=161.2
Q ss_pred CCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhcCcEEEecCCC
Q 013850 191 QTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGKF 270 (435)
Q Consensus 191 ~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~~i~~~~~~ 270 (435)
.+++++|+|||||||.||+|++||+++.+.+......+.+... |++++.+|++|.+|+. .++.++..|+++++.++.
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~--d~~l~~~pl~h~~gl~-~~~~~l~~g~~~~~~~~~ 112 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPG--TRALVCLNVGYIAGLM-MLVRGMELDWELTVTEPT 112 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTT--CEEEECSCTTSHHHHH-HHHHHHHHTCEEEEECCC
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCC--CEEEEECChHHHHHHH-HHHHHHHhCcEEEecCcc
Confidence 4789999999999999999999999999988776666555443 9999999999999995 778889999999887542
Q ss_pred CHHHHHHHHHhcCceEEEecHHHHHHHHhcccccCCCCcceeEEEecCCCCcHHHHHHHHhhCCCCeeecCcCccccccc
Q 013850 271 DIEMALRAIEKYRVTVWWVVPPIILALAKNSLVRKFDISSLKLVGSGAAPLGKELMEDCQKNIPGATIFQGYGMTETCAP 350 (435)
Q Consensus 271 ~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~ 350 (435)
...++.++++++|++.++|+++..|++.... ..++++||.+++||+++++++.+++++. ++++++.||+||+++.
T Consensus 113 --~~~~~~i~~~~~t~~~~~P~~l~~ll~~~~~-~~~l~~lr~v~~gG~~l~~~~~~~~~~~--~~~~~~~YG~TEt~~~ 187 (358)
T 4gs5_A 113 --ANPLAGLDHADFDFVAMVPMQLQSILENSAT-SGQVDRLGKVLLGGAPVNHALAMQISDL--AMPVYQSYGMTETVSH 187 (358)
T ss_dssp --SCTTTTCSSCCCSEEEECHHHHHHHHHCTTT-GGGGGGGCSEEECSSCCCHHHHHHHHTC--SSCEEEEEECGGGSSE
T ss_pred --ccHHHHHHHhCCeEEEcChHHHHHhhccccc-cccCCcceEEEEcccCCCchheeccccc--CceEEeccccccccce
Confidence 2346788999999999999999999987653 3478999999999999999999999875 5999999999999887
Q ss_pred ccccCCCCCCcCCCCcccccCCcEEEEEeCCCCccCCCCCceeEEEeCCCcccc
Q 013850 351 ISLENPLVGVRRSGSAGTLVAGVEAQIVSVDTLKPLPPNQLGEIWVRGPNVTPG 404 (435)
Q Consensus 351 ~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gei~v~g~~~~~g 404 (435)
+...... ....+.+|.+.||+++.+.+ .|||+++|+....|
T Consensus 188 ~~~~~~~--~~~~g~~~~~~pgv~~~~~~-----------~Gel~~~g~~~~~g 228 (358)
T 4gs5_A 188 VALKALN--GPEASELYVFLPGIQYGVDE-----------RGCLHISGAVTNGQ 228 (358)
T ss_dssp EEEEECS--STTCCSCEEECTTCEEEECT-----------TSEEEEESGGGTTC
T ss_pred eeccccc--ccccceeeccCCCeEEEecC-----------cCceEEecccccCc
Confidence 7765544 45678889999999888744 38999998755444
No 37
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=97.17 E-value=0.0019 Score=62.76 Aligned_cols=33 Identities=24% Similarity=0.286 Sum_probs=27.2
Q ss_pred CCCCCCEEEEEeCCCCC-CCccceeeccHHHHHH
Q 013850 188 SVKQTDAAALLYSSGTT-GVSKGVILTHKNFIAA 220 (435)
Q Consensus 188 ~~~~~~~~~i~~TSGtT-G~pK~v~~t~~~l~~~ 220 (435)
-..++.+.+...||||| |.+|.++.|.+.+-..
T Consensus 89 iL~~~pi~~F~~SSGTT~g~~K~IP~T~e~l~~~ 122 (581)
T 4eql_A 89 VISARTITGFLLSSGTSGGAQKMMPWNNKYLDNL 122 (581)
T ss_dssp GTCSSCCCEEEEEEEEETTEEEEEEECHHHHHHH
T ss_pred ccCCCCCCeEEeCCCCCCCCccccccCHHHHHHH
Confidence 34667778999999999 6799999999987553
No 38
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=97.08 E-value=0.00081 Score=65.48 Aligned_cols=31 Identities=23% Similarity=0.232 Sum_probs=26.7
Q ss_pred CCCCCEEEEEeCCCCC-CCccceeeccHHHHH
Q 013850 189 VKQTDAAALLYSSGTT-GVSKGVILTHKNFIA 219 (435)
Q Consensus 189 ~~~~~~~~i~~TSGtT-G~pK~v~~t~~~l~~ 219 (435)
..++.+.++..||||| |+||.|..|...+-.
T Consensus 96 l~~~~i~~f~~SSGTT~gk~K~IP~t~~~l~~ 127 (609)
T 4b2g_A 96 LSAHPISEFLTSSGTSAGERKLMPTIQEELDR 127 (609)
T ss_dssp SCSSCCCEEEEEEEEETTEEEEEEECTTHHHH
T ss_pred cCCCCCCeEEeCCCCCCCCceeeecCHHHHHH
Confidence 4667778999999999 789999999998765
No 39
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=96.46 E-value=0.0082 Score=58.21 Aligned_cols=33 Identities=24% Similarity=0.204 Sum_probs=27.3
Q ss_pred CCCCCCCEEEEEeCCCCC-CCccceeeccHHHHH
Q 013850 187 VSVKQTDAAALLYSSGTT-GVSKGVILTHKNFIA 219 (435)
Q Consensus 187 ~~~~~~~~~~i~~TSGtT-G~pK~v~~t~~~l~~ 219 (435)
.-..++.+.+...||||| |++|.++.|.+.+-.
T Consensus 93 ~iL~~~pi~~f~~SSGTT~gk~K~IP~T~~~l~~ 126 (581)
T 4epl_A 93 PILTGHPVPAISLSSGTSQGRPKFIPFTDELMEN 126 (581)
T ss_dssp SSSSSSCCSEEEEEEEEETTEEEEEEECHHHHHH
T ss_pred CccCCCCcceEEecCCCCCCCccccccCHHHHHH
Confidence 345667778899999999 779999999998755
No 40
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=95.21 E-value=0.15 Score=48.20 Aligned_cols=101 Identities=14% Similarity=0.139 Sum_probs=77.3
Q ss_pred CCCceeeeecCCC-------cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCC--cHHHHHHHHHHcCcEEEecC
Q 013850 40 YSSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSI--HFPICFLGVIAIGAIASTAN 110 (435)
Q Consensus 40 ~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~--~~~~~~lA~~~~G~~~v~i~ 110 (435)
.++.++.+...+| ..+|++.+...+..+++.+...|+.++|++...++-+. ..+...++++..|+..++++
T Consensus 88 ~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 167 (437)
T 2y27_A 88 PQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFG 167 (437)
T ss_dssp CGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCC
T ss_pred ChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCC
Confidence 4456665433323 46899999988888888887889999999999888643 23445688889999998776
Q ss_pred CCCCHHHHHHHHHhcCCeEEEEccccHHHHh
Q 013850 111 PVYTVSELSKQVKDSNPKLVITVPELWDKVK 141 (435)
Q Consensus 111 ~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~ 141 (435)
. .+.+.+...+++.++.+++..+..+..+.
T Consensus 168 ~-~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~ 197 (437)
T 2y27_A 168 G-GQTEKQVQLIQDFRPDIIMVTPSYMLSIA 197 (437)
T ss_dssp S-CCHHHHHHHHHHHCCSEEEECHHHHHHHH
T ss_pred C-CCHHHHHHHHHHhCCCEEEECHHHHHHHH
Confidence 5 47888889999999999999987766553
No 41
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=94.84 E-value=0.17 Score=47.77 Aligned_cols=88 Identities=11% Similarity=0.101 Sum_probs=71.4
Q ss_pred cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCC--cHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCeEE
Q 013850 53 ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSI--HFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV 130 (435)
Q Consensus 53 ~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~--~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v 130 (435)
..+|.+.+...+..++..+...|+.++|++...++-+. ..+...++++..|+..++++.. +.+.+...+++.++.++
T Consensus 110 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~i~~~~~t~l 188 (443)
T 2y4o_A 110 VGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSGG-QTEKQVQLIRDFEPKII 188 (443)
T ss_dssp EEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHHHHHHCCSEE
T ss_pred EecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCCC-CHHHHHHHHHHhCCcEE
Confidence 46899999988888888887889999999999888643 2344568888999999887654 77888899999999999
Q ss_pred EEccccHHHHh
Q 013850 131 ITVPELWDKVK 141 (435)
Q Consensus 131 i~~~~~~~~~~ 141 (435)
+..+..+..+.
T Consensus 189 ~~~Ps~~~~l~ 199 (443)
T 2y4o_A 189 LVTPSYMLNLI 199 (443)
T ss_dssp EECHHHHHHHH
T ss_pred EECHHHHHHHH
Confidence 99887766543
No 42
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=94.80 E-value=0.15 Score=48.13 Aligned_cols=99 Identities=16% Similarity=0.074 Sum_probs=77.6
Q ss_pred CceeeeecCCC-------cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCC--CcHHHHHHHHHHcCcEEEecCCC
Q 013850 42 SKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNS--IHFPICFLGVIAIGAIASTANPV 112 (435)
Q Consensus 42 ~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~--~~~~~~~lA~~~~G~~~v~i~~~ 112 (435)
+.+|++...+| ..+|.+.+...+..++..+...|+.++|++...++-+ ...+..+++++..|+..++.+..
T Consensus 86 ~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~ 165 (436)
T 3qov_A 86 RDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAAG 165 (436)
T ss_dssp HHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCSC
T ss_pred CCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCCC
Confidence 56666543333 4689999999998888888888999999999988754 23344678889999998887654
Q ss_pred CCHHHHHHHHHhcCCeEEEEccccHHHHh
Q 013850 113 YTVSELSKQVKDSNPKLVITVPELWDKVK 141 (435)
Q Consensus 113 ~~~~~~~~~l~~~~~~~vi~~~~~~~~~~ 141 (435)
..+.+...+++.++.+++..+..+..+.
T Consensus 166 -~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 193 (436)
T 3qov_A 166 -NSKRQIKFISDFKTTALHAIPSYAIRLA 193 (436)
T ss_dssp -CHHHHHHHHHHHTCCEEECCHHHHHHHH
T ss_pred -CHHHHHHHHHHHCCCEEEECHHHHHHHH
Confidence 6788888999999999999988766554
No 43
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=94.69 E-value=0.0073 Score=55.62 Aligned_cols=44 Identities=14% Similarity=0.131 Sum_probs=32.5
Q ss_pred CCCCceeEEEeCCCccccccccCCcccccccccccccCcceecCCCCC
Q 013850 387 PPNQLGEIWVRGPNVTPGIVYINFFVFTLFLWGCEHTDSFIRGKDQQT 434 (435)
Q Consensus 387 ~~g~~Gei~v~g~~~~~g~~y~~~~~~~~~~~~~~~~~~~~~tgD~~~ 434 (435)
+.++.|++.+.+|++..+ |.++++.... +.+..++||+|||+++
T Consensus 194 ~~~~~g~~~~~~pgv~~~--~~~~Gel~~~--g~~~~~g~~~TGDlg~ 237 (358)
T 4gs5_A 194 NGPEASELYVFLPGIQYG--VDERGCLHIS--GAVTNGQTVQTNDLVE 237 (358)
T ss_dssp SSTTCCSCEEECTTCEEE--ECTTSEEEEE--SGGGTTCCEEEEEEEE
T ss_pred cccccceeeccCCCeEEE--ecCcCceEEe--cccccCcceecCCccc
Confidence 345668888888888888 8877776544 5566778888888764
No 44
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=90.77 E-value=0.82 Score=41.83 Aligned_cols=87 Identities=9% Similarity=0.117 Sum_probs=64.9
Q ss_pred cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCc--HHHHHHHHHHcCcEEEecCCCCCHH--------------
Q 013850 53 ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIH--FPICFLGVIAIGAIASTANPVYTVS-------------- 116 (435)
Q Consensus 53 ~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~--~~~~~lA~~~~G~~~v~i~~~~~~~-------------- 116 (435)
..+|.+.+...+..+++.+...|+.++|++..++|-+.. -+...++++..|+.+++.. .++.
T Consensus 109 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~~--~dp~~~~~~~~~~~~~~~ 186 (369)
T 3hgu_A 109 VVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSID--IDPRWVKRSLSEGDTATV 186 (369)
T ss_dssp EEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECCC--CCHHHHHHHHHTTCHHHH
T ss_pred EEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECcc--CChHHHHHhhcccchhhh
Confidence 467999999888887777778899999999999987433 2334455588899665543 3444
Q ss_pred ---------HHHHHHHhcCCeEEEEccccHHHHh
Q 013850 117 ---------ELSKQVKDSNPKLVITVPELWDKVK 141 (435)
Q Consensus 117 ---------~~~~~l~~~~~~~vi~~~~~~~~~~ 141 (435)
.+...+++.++.+++..+..+..+.
T Consensus 187 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~ 220 (369)
T 3hgu_A 187 RKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELL 220 (369)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHH
Confidence 6666889999999999887776554
No 45
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=90.44 E-value=2.5 Score=40.45 Aligned_cols=101 Identities=15% Similarity=0.133 Sum_probs=76.2
Q ss_pred cCCCceeeeecCCC-------cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcH-HHHHHHHHHcCcEEEecC
Q 013850 39 SYSSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHF-PICFLGVIAIGAIASTAN 110 (435)
Q Consensus 39 ~~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~-~~~~lA~~~~G~~~v~i~ 110 (435)
..++.+|++...+| ..+|++.+...+..+... .++.++|++...+|-...+ +..+++++..|+..+..+
T Consensus 160 ~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~ 236 (501)
T 3ipl_A 160 FNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKES---LGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVD 236 (501)
T ss_dssp CCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHH---TCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS
T ss_pred CCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHh---hCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCC
Confidence 45678887654433 468999988777665543 4889999999988875322 334677888999988775
Q ss_pred CCCCHHHHHHHHHhcCCeEEEEccccHHHHhhc
Q 013850 111 PVYTVSELSKQVKDSNPKLVITVPELWDKVKDL 143 (435)
Q Consensus 111 ~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~ 143 (435)
..+.+.+...+++.++.+++..+..+..+...
T Consensus 237 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 268 (501)
T 3ipl_A 237 -KFNAEQILTMIKNERITHISLVPQTLNWLMQQ 268 (501)
T ss_dssp -SCCHHHHHHHHHHSCCCEEEECHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHcCCcEEEchHHHHHHHHhc
Confidence 46888899999999999999998887766543
No 46
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=89.41 E-value=4.3 Score=39.24 Aligned_cols=99 Identities=14% Similarity=0.148 Sum_probs=73.7
Q ss_pred cCCCceeeeecCCC-------cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHH---HHHHHHHcCcEEEe
Q 013850 39 SYSSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPI---CFLGVIAIGAIAST 108 (435)
Q Consensus 39 ~~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~---~~lA~~~~G~~~v~ 108 (435)
..|+.+|++.-.+| ..+|++.+...+...... .++.++|++...+|-...+-. .+++.+..|++.+.
T Consensus 179 ~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~ 255 (539)
T 1mdb_A 179 VKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEV---CWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVL 255 (539)
T ss_dssp CCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEE
T ss_pred CCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHh---hCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEE
Confidence 34677777644433 578999988777665544 378899999888886643322 47888999999887
Q ss_pred cCCCCCHHHHHHHHHhcCCeEEEEccccHHHHh
Q 013850 109 ANPVYTVSELSKQVKDSNPKLVITVPELWDKVK 141 (435)
Q Consensus 109 i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~ 141 (435)
.+ ..+.+.+...+++.++.+++..+..+..+.
T Consensus 256 ~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 287 (539)
T 1mdb_A 256 SP-SPSPDDAFPLIEREKVTITALVPPLAMVWM 287 (539)
T ss_dssp CS-SSSHHHHHHHHHHHTCSEEEECHHHHHHHH
T ss_pred CC-CCCHHHHHHHHHHcCCeEEEccHHHHHHHH
Confidence 64 467888889999999999999887766553
No 47
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=89.31 E-value=1.7 Score=42.23 Aligned_cols=99 Identities=18% Similarity=0.178 Sum_probs=73.0
Q ss_pred CceeeeecCCC-------cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcH--HHHHHHHHHcCcEEEecCCC
Q 013850 42 SKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHF--PICFLGVIAIGAIASTANPV 112 (435)
Q Consensus 42 ~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~--~~~~lA~~~~G~~~v~i~~~ 112 (435)
+.+|++...+| ..+|++.+...+......+...++.++|++...+|-...+ ...+++++ .|++.+.++ .
T Consensus 192 ~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~-~ 269 (548)
T 2d1s_A 192 EQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT-K 269 (548)
T ss_dssp TCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC-C
T ss_pred CCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC-C
Confidence 77777654433 4689999887766655443335889999998888875433 23356677 999888775 5
Q ss_pred CCHHHHHHHHHhcCCeEEEEccccHHHHhh
Q 013850 113 YTVSELSKQVKDSNPKLVITVPELWDKVKD 142 (435)
Q Consensus 113 ~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~ 142 (435)
.+.+.+...+++.++.+++..+..+..+..
T Consensus 270 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 299 (548)
T 2d1s_A 270 FDEETFLKTLQDYKCTSVILVPTLFAILNK 299 (548)
T ss_dssp CCHHHHHHHHHHTTEEEEEECHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCcEEEecHHHHHHHHh
Confidence 678889999999999999999887776654
No 48
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=88.44 E-value=4.7 Score=39.02 Aligned_cols=98 Identities=13% Similarity=0.116 Sum_probs=73.3
Q ss_pred CCCceeeeecCCC-------cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHH---HHHHHHHcCcEEEec
Q 013850 40 YSSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPI---CFLGVIAIGAIASTA 109 (435)
Q Consensus 40 ~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~---~~lA~~~~G~~~v~i 109 (435)
.++.+|++...+| ..+|++.+...+...+.. .++.++|++...+|-...+-. .+++.+..|++.+..
T Consensus 189 ~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~ 265 (544)
T 3o83_A 189 PADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEI---CGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMA 265 (544)
T ss_dssp CTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred CccceEEEEECCCcccCCceEEechHHHHHHHHHHHHH---hCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEEC
Confidence 4577777644433 468999988777666554 488999999999886544333 378888999988876
Q ss_pred CCCCCHHHHHHHHHhcCCeEEEEccccHHHHh
Q 013850 110 NPVYTVSELSKQVKDSNPKLVITVPELWDKVK 141 (435)
Q Consensus 110 ~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~ 141 (435)
+ ......+...+++.++.++...+..+..+.
T Consensus 266 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 296 (544)
T 3o83_A 266 P-NPEPLNCFSIIQRHQVNMASLVPSAVIMWL 296 (544)
T ss_dssp S-SCCHHHHHHHHHHHTCCEEEECHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHCCCEEEechHHHHHHH
Confidence 5 457788888999999999999887665543
No 49
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=86.68 E-value=5.4 Score=38.27 Aligned_cols=97 Identities=10% Similarity=0.124 Sum_probs=71.2
Q ss_pred CCCceeeeecCCC-------cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHH--HHHHHHcCcEEEecC
Q 013850 40 YSSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPIC--FLGVIAIGAIASTAN 110 (435)
Q Consensus 40 ~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~--~lA~~~~G~~~v~i~ 110 (435)
.|+.+|++...+| ..+|++.+...+..++.. .++.++|++...+|-...+-.. +++++ .|++.+..
T Consensus 168 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v~~- 242 (517)
T 3r44_A 168 GGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWAST---IDVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISM- 242 (517)
T ss_dssp CTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHH---SCCCTTCEEEECSCTTSHHHHHHHHHHHH-HTCEEEEC-
T ss_pred CCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHh---cCCCCCCEEEEeCchHHHHHHHHHHHHHh-cCeEEEEe-
Confidence 3567777644333 578999988777666554 4889999999988876443332 45555 89888876
Q ss_pred CCCCHHHHHHHHHhcCCeEEEEccccHHHHh
Q 013850 111 PVYTVSELSKQVKDSNPKLVITVPELWDKVK 141 (435)
Q Consensus 111 ~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~ 141 (435)
+..+...+...+++.++.++...+..+..+.
T Consensus 243 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 273 (517)
T 3r44_A 243 PQFDATKVWSLIVEERVCIGGAVPAILNFMR 273 (517)
T ss_dssp SSCCHHHHHHHHHHTTCCEEEECHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCeEEEeHHHHHHHHH
Confidence 4578888999999999999999987776554
No 50
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=85.96 E-value=3.8 Score=39.29 Aligned_cols=99 Identities=12% Similarity=0.102 Sum_probs=73.5
Q ss_pred CCCceeeeecCCC-------cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcH-HHHHHHHHHcCcEEEecCC
Q 013850 40 YSSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHF-PICFLGVIAIGAIASTANP 111 (435)
Q Consensus 40 ~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~-~~~~lA~~~~G~~~v~i~~ 111 (435)
.++.+|++...+| ..+|++.+...+..... ..++.++|++...+|-+..+ +..+++++..|++.+.++.
T Consensus 142 ~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~ 218 (512)
T 3fce_A 142 KGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVE---DFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDK 218 (512)
T ss_dssp CTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHH---HTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCH
T ss_pred CCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHH---hcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCH
Confidence 4566777544333 46899988876665544 45889999999999876433 4457888999999888765
Q ss_pred C--CCHHHHHHHHHhcCCeEEEEccccHHHHh
Q 013850 112 V--YTVSELSKQVKDSNPKLVITVPELWDKVK 141 (435)
Q Consensus 112 ~--~~~~~~~~~l~~~~~~~vi~~~~~~~~~~ 141 (435)
. .....+...+++.++.+++..+.....+.
T Consensus 219 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 250 (512)
T 3fce_A 219 DMIARPKDLFASLEQSDIQVWTSTPSFAEMCL 250 (512)
T ss_dssp HHHHSHHHHHHHHHHHCCCEEEECHHHHHHHT
T ss_pred HHhhCHHHHHHHHHHcCCcEEEecHHHHHHHH
Confidence 3 46778888999999999999988776653
No 51
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=85.41 E-value=3.9 Score=39.22 Aligned_cols=100 Identities=13% Similarity=0.090 Sum_probs=73.3
Q ss_pred CCCceeeeecCCC-------cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcH-HHHHHHHHHcCcEEEecCC
Q 013850 40 YSSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHF-PICFLGVIAIGAIASTANP 111 (435)
Q Consensus 40 ~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~-~~~~lA~~~~G~~~v~i~~ 111 (435)
.++.+|++...+| ..+|++.+...+..++. ..++.++|++...+|-+..+ +..+++++..|++.+.++.
T Consensus 141 ~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~ 217 (511)
T 3e7w_A 141 KEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICA---DFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTK 217 (511)
T ss_dssp CTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHH---HSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCH
T ss_pred CCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHH---hcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcCh
Confidence 4566676533323 46899998877666554 35788999999998876443 3457888999999887754
Q ss_pred C--CCHHHHHHHHHhcCCeEEEEccccHHHHhh
Q 013850 112 V--YTVSELSKQVKDSNPKLVITVPELWDKVKD 142 (435)
Q Consensus 112 ~--~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~ 142 (435)
. .....+...+++.++.+++..+..+..+..
T Consensus 218 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 250 (511)
T 3e7w_A 218 DAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLM 250 (511)
T ss_dssp HHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHT
T ss_pred hhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHh
Confidence 3 466778889999999999999887766543
No 52
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=84.31 E-value=4.9 Score=38.95 Aligned_cols=101 Identities=16% Similarity=0.145 Sum_probs=72.4
Q ss_pred CCceeeeecCCC-------cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcH-HHHHHHHHHcCcEEEecCCC
Q 013850 41 SSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHF-PICFLGVIAIGAIASTANPV 112 (435)
Q Consensus 41 p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~-~~~~lA~~~~G~~~v~i~~~ 112 (435)
++.+|++...+| ..+|++.+..........+...++.++|++...+|-...+ +...++.+..|+..+.+. .
T Consensus 189 ~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~-~ 267 (550)
T 3rix_A 189 DKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMY-R 267 (550)
T ss_dssp TTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-S
T ss_pred CCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeC-C
Confidence 356676644333 5689998877665554444335788999999888876432 345667788999888774 5
Q ss_pred CCHHHHHHHHHhcCCeEEEEccccHHHHhh
Q 013850 113 YTVSELSKQVKDSNPKLVITVPELWDKVKD 142 (435)
Q Consensus 113 ~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~ 142 (435)
.+.+.+...+++.++.+++..+..+..+..
T Consensus 268 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 297 (550)
T 3rix_A 268 FEEELFLRSLQDYKIQSALLVPTLFSFFAK 297 (550)
T ss_dssp CCHHHHHHHHHHTTCSEEEECHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCeEEEeCcHHHHHHHh
Confidence 678888999999999999999887766543
No 53
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=84.14 E-value=12 Score=36.79 Aligned_cols=97 Identities=12% Similarity=0.111 Sum_probs=71.9
Q ss_pred CCCceeeeecCCC-------cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHH---HHHHHHHcCcEEEec
Q 013850 40 YSSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPI---CFLGVIAIGAIASTA 109 (435)
Q Consensus 40 ~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~---~~lA~~~~G~~~v~i 109 (435)
.|+.+|++...+| ..+|++.+...+......+ ++.++|++...+|-...+-. .+++++..|+..+..
T Consensus 182 ~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~---~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~ 258 (617)
T 3rg2_A 182 PADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC---QFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLA 258 (617)
T ss_dssp CTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH---TCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEEC
T ss_pred CCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhc---CCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEe
Confidence 4577777644433 5789999887776665544 78899999999885543332 378888899988876
Q ss_pred CCCCCHHHHHHHHHhcCCeEEEEccccHHHH
Q 013850 110 NPVYTVSELSKQVKDSNPKLVITVPELWDKV 140 (435)
Q Consensus 110 ~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~ 140 (435)
+. .+...+...+++.++.++...+.....+
T Consensus 259 ~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l 288 (617)
T 3rg2_A 259 AD-PSATLCFPLIEKHQVNVTALVPPAVSLW 288 (617)
T ss_dssp SS-CCHHHHHHHHHHTTCCEEEECHHHHHHH
T ss_pred CC-CCHHHHHHHHHHhCCcEEEcchHHHHHH
Confidence 54 5777788899999999999988766654
No 54
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=83.36 E-value=5.2 Score=39.09 Aligned_cols=99 Identities=15% Similarity=0.188 Sum_probs=72.7
Q ss_pred cCCCceeeeecCCC-------cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHH--HHHHHHHcCcEEEec
Q 013850 39 SYSSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPI--CFLGVIAIGAIASTA 109 (435)
Q Consensus 39 ~~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~--~~lA~~~~G~~~v~i 109 (435)
..|+.+|++...+| ..+|++.+...+..+... .++.++|++...+|-...+-. .+++.+..|++.+.+
T Consensus 164 ~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~ 240 (590)
T 3kxw_A 164 IKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTS---FHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMM 240 (590)
T ss_dssp CCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEEC
T ss_pred CCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHh---hCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEe
Confidence 35677787654433 568999998877766554 588999999999988755433 378888999998887
Q ss_pred CCCC---CHHHHHHHHHhcCCeEEEEccccHHHH
Q 013850 110 NPVY---TVSELSKQVKDSNPKLVITVPELWDKV 140 (435)
Q Consensus 110 ~~~~---~~~~~~~~l~~~~~~~vi~~~~~~~~~ 140 (435)
++.. .+..+...+++.++.++...+..+..+
T Consensus 241 ~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l 274 (590)
T 3kxw_A 241 SPFSFLQNPLSWLKHITKYKATISGSPNFAYDYC 274 (590)
T ss_dssp CHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHH
T ss_pred CHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHH
Confidence 6532 456777888999999998877655544
No 55
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=82.92 E-value=6.3 Score=38.12 Aligned_cols=96 Identities=11% Similarity=0.144 Sum_probs=72.0
Q ss_pred CceeeeecC---CC----cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcH-HHHHHHHHHcCcEEEecCCCC
Q 013850 42 SKLALIDAD---SD----ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHF-PICFLGVIAIGAIASTANPVY 113 (435)
Q Consensus 42 ~~~a~~~~~---~~----~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~-~~~~lA~~~~G~~~v~i~~~~ 113 (435)
+.+|++... .| ..+|++.+...+..++..+ ++.++|++...+|-...+ +..++.++..|+..+.++ ..
T Consensus 180 ~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~-~~ 255 (549)
T 3g7s_A 180 EDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVAT---GLSHMDTIVGCMPMFHSAEFGLVNLMVTVGNEYVVMG-MF 255 (549)
T ss_dssp TSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHH---CCCTTCEEECCSCTTSHHHHHHHTTHHHHCCEEEEES-SC
T ss_pred CCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHc---CCCCCCEEEEeCcHHHHHHHHHHHHHHhcCceEEEcC-CC
Confidence 667765332 23 5789999988887776654 789999998888865432 233667788899888775 66
Q ss_pred CHHHHHHHHHhcCCeEEEEccccHHHHh
Q 013850 114 TVSELSKQVKDSNPKLVITVPELWDKVK 141 (435)
Q Consensus 114 ~~~~~~~~l~~~~~~~vi~~~~~~~~~~ 141 (435)
+.+.+...+++.++.+++..+..+..+.
T Consensus 256 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 283 (549)
T 3g7s_A 256 NQEMLAENIEKYKGTFSWAVPPALNVLV 283 (549)
T ss_dssp CHHHHHHHHHHTTCCEEEECHHHHHHHH
T ss_pred CHHHHHHHHHHhCCeEEEeCCHHHHHHH
Confidence 8888999999999999999987766553
No 56
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=82.51 E-value=6.3 Score=37.61 Aligned_cols=99 Identities=15% Similarity=0.179 Sum_probs=72.4
Q ss_pred cCCCceeeeecCCC-------cceeHHHHHHHHHHHHHHHHhCCC--CCCCEEEEEcCCCCcHH--HHHHHHHHcCcEEE
Q 013850 39 SYSSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGI--TKKDVVLIFAPNSIHFP--ICFLGVIAIGAIAS 107 (435)
Q Consensus 39 ~~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~g~--~~gd~V~l~~~~~~~~~--~~~lA~~~~G~~~v 107 (435)
..|+.+|++...+| ..+|++.+...+..++. ..++ .++|++...+|-...+- ..+++.+..|++.+
T Consensus 150 ~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~---~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v 226 (504)
T 1t5h_X 150 REPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMST---QVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYV 226 (504)
T ss_dssp CCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHH---TTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEE
T ss_pred CCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHH---hhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEE
Confidence 35677777644433 46899888776665543 3467 78898888887654332 34678889999988
Q ss_pred ecCCCCCHHHHHHHHHhcCCeEEEEccccHHHHh
Q 013850 108 TANPVYTVSELSKQVKDSNPKLVITVPELWDKVK 141 (435)
Q Consensus 108 ~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~ 141 (435)
..+ ......+...+++.++.+++..+..+..+.
T Consensus 227 ~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 259 (504)
T 1t5h_X 227 VVE-EFRPVDALQLVQQEQVTSLFATPTHLDALA 259 (504)
T ss_dssp ECS-SCCHHHHHHHHHHHTCCEEECCHHHHHHHH
T ss_pred eCC-CCCHHHHHHHHHHhCCeEEEeChHHHHHHH
Confidence 775 467888888999999999999988776664
No 57
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=81.77 E-value=10 Score=36.23 Aligned_cols=99 Identities=12% Similarity=0.038 Sum_probs=67.0
Q ss_pred cCCCceeeeec---CCC----cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHH-HHHHH-HHHcCcEEEec
Q 013850 39 SYSSKLALIDA---DSD----ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFP-ICFLG-VIAIGAIASTA 109 (435)
Q Consensus 39 ~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~-~~~lA-~~~~G~~~v~i 109 (435)
..++.+|++.. ..| ..+|.+.+...+..+... .++.++|++...+|-...+- ...+. ++..|..+++
T Consensus 157 ~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~~- 232 (509)
T 3ivr_A 157 FGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDA---WRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIA- 232 (509)
T ss_dssp CCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEC-
T ss_pred CCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHh---hCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEEe-
Confidence 34566666533 333 578999988777666554 48899999999988754332 22333 4444555444
Q ss_pred CCCCCHHHHHHHHHhcCCeEEEEccccHHHHhh
Q 013850 110 NPVYTVSELSKQVKDSNPKLVITVPELWDKVKD 142 (435)
Q Consensus 110 ~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~ 142 (435)
. ..+.+.+...+++.++.+++..+..+..+..
T Consensus 233 ~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~ 264 (509)
T 3ivr_A 233 A-KFDPAQAARDIEAHKVTVMAEFAPMLGNILD 264 (509)
T ss_dssp S-SCCHHHHHHHHHHHTCCEEEEETTHHHHHHH
T ss_pred c-ccCHHHHHHHHHHHCCcEEEecHHHHHHHHh
Confidence 3 6788899999999999999988877766543
No 58
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=81.10 E-value=11 Score=36.61 Aligned_cols=101 Identities=15% Similarity=0.143 Sum_probs=70.8
Q ss_pred cCCCceeeeecCCC-------cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHH--HHHHHHHcCcEEEec
Q 013850 39 SYSSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPI--CFLGVIAIGAIASTA 109 (435)
Q Consensus 39 ~~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~--~~lA~~~~G~~~v~i 109 (435)
..++.+|++...+| ..+|++ +........ ....++.++|++...++-...+-. .+++.+..|+..+..
T Consensus 203 ~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~--~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~ 279 (570)
T 3c5e_A 203 TGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMD--AGWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVH 279 (570)
T ss_dssp CBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHH--TTTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEE
T ss_pred CCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhh--hhhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEe
Confidence 34667777644433 467888 443211111 145688999999888887654332 467888899988776
Q ss_pred CC-CCCHHHHHHHHHhcCCeEEEEccccHHHHhh
Q 013850 110 NP-VYTVSELSKQVKDSNPKLVITVPELWDKVKD 142 (435)
Q Consensus 110 ~~-~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~ 142 (435)
.. ..++..+...+++.++.+++..+..+..+..
T Consensus 280 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 313 (570)
T 3c5e_A 280 LLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQ 313 (570)
T ss_dssp CCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHh
Confidence 53 6788889999999999999999888777654
No 59
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=79.70 E-value=8.4 Score=37.17 Aligned_cols=101 Identities=15% Similarity=0.122 Sum_probs=69.7
Q ss_pred CCCceeeeecC---CC----cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHH-HHHHHHHHcCcEEEecCC
Q 013850 40 YSSKLALIDAD---SD----ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFP-ICFLGVIAIGAIASTANP 111 (435)
Q Consensus 40 ~p~~~a~~~~~---~~----~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~-~~~lA~~~~G~~~v~i~~ 111 (435)
.++.+|++... .| ..+|++.+...+.... .....++.++|++...+|-.-.+- ...++++..|+..+..++
T Consensus 174 ~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~-~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~v~~~~ 252 (541)
T 1v25_A 174 PERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAAS-LVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGP 252 (541)
T ss_dssp CTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTT-STTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEECTT
T ss_pred CCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhh-hcccccCCCCCEEEEeccchhhhHHHHHHHHHhcCceEEeeCC
Confidence 35666765332 22 4689988765433211 112347889999988888643222 245777888999888776
Q ss_pred CCCHHHHHHHHHhcCCeEEEEccccHHHHh
Q 013850 112 VYTVSELSKQVKDSNPKLVITVPELWDKVK 141 (435)
Q Consensus 112 ~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~ 141 (435)
..+.+.+...+++.++.+++..+..+..+.
T Consensus 253 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 282 (541)
T 1v25_A 253 RLDPASLVELFDGEGVTFTAGVPTVWLALA 282 (541)
T ss_dssp CCSHHHHHHHHHHTTCCEEEECHHHHHHHH
T ss_pred CCCHHHHHHHHHhcCeeEEecchHHHHHHH
Confidence 678899999999999999999887766553
No 60
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=77.46 E-value=6.4 Score=37.82 Aligned_cols=100 Identities=17% Similarity=0.153 Sum_probs=70.2
Q ss_pred CCCceeeeecCCC-------cceeHHHH-HHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHH--HHHHHHHHcCcEEEec
Q 013850 40 YSSKLALIDADSD-------ESLSFSQF-KSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFP--ICFLGVIAIGAIASTA 109 (435)
Q Consensus 40 ~p~~~a~~~~~~~-------~~~Ty~el-~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~--~~~lA~~~~G~~~v~i 109 (435)
.|+.+|++...+| ..+|++.+ ....... ....++.++|++...+|-...+- ..++..+..|+..+.+
T Consensus 181 ~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~---~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~ 257 (529)
T 2v7b_A 181 GCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYA---KPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILM 257 (529)
T ss_dssp CTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTC---CCCCCCCTTCEEEESSCTTSHHHHHHHTHHHHHHTCEEECC
T ss_pred CCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHh---hhccCCCCCcEEEEeecHHHHHHHHHHHHHHHhcCcEEEEe
Confidence 4577777644333 46899887 3322111 12347889999988888765443 3356788899998887
Q ss_pred CCCCCHHHHHHHHHhcCCeEEEEccccHHHHhh
Q 013850 110 NPVYTVSELSKQVKDSNPKLVITVPELWDKVKD 142 (435)
Q Consensus 110 ~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~ 142 (435)
.+..+.+.+...+++.++.+++..+..+..+..
T Consensus 258 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 290 (529)
T 2v7b_A 258 AERPTADAIFARLVEHRPTVFYGVPTLYANMLV 290 (529)
T ss_dssp CSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHh
Confidence 677788899999999999999998887765543
No 61
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=76.24 E-value=19 Score=34.21 Aligned_cols=99 Identities=12% Similarity=0.233 Sum_probs=70.3
Q ss_pred cCCCceeeeecCCC-------cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcH--HHHHHHHHHcCcEEEec
Q 013850 39 SYSSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHF--PICFLGVIAIGAIASTA 109 (435)
Q Consensus 39 ~~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~--~~~~lA~~~~G~~~v~i 109 (435)
..++.+|++...+| ..+|++.+...+..++..+ ++.++|++...+|-.-.+ +..+++.+..|++.+..
T Consensus 152 ~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~ 228 (505)
T 3nyq_A 152 ADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW---QWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHL 228 (505)
T ss_dssp CCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH---TCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEEC
T ss_pred CCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh---CCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEEC
Confidence 34567777643333 5789999988887776655 788999988888764322 33478889999998876
Q ss_pred CCCCCHHHHHHHHHhcCCeEEEEccccHHHHhh
Q 013850 110 NPVYTVSELSKQVKDSNPKLVITVPELWDKVKD 142 (435)
Q Consensus 110 ~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~ 142 (435)
. ..+.+.+...+ +.++.+++..+..+..+..
T Consensus 229 ~-~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~ 259 (505)
T 3nyq_A 229 G-RFSTEGAAREL-NDGATMLFGVPTMYHRIAE 259 (505)
T ss_dssp S-SCCHHHHHHHH-TTTCCEEEECHHHHHHHHH
T ss_pred C-CCChHHHHHHH-hhCCeEEEehHHHHHHHHH
Confidence 4 55666666666 6789999988876665543
No 62
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=75.67 E-value=7.3 Score=37.85 Aligned_cols=98 Identities=15% Similarity=0.127 Sum_probs=68.8
Q ss_pred CCCceeeeecCCC-------cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcH-HHHHHHHHHcCcEEEecCC
Q 013850 40 YSSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHF-PICFLGVIAIGAIASTANP 111 (435)
Q Consensus 40 ~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~-~~~~lA~~~~G~~~v~i~~ 111 (435)
.++.+|++...+| ..+|++.+...+..++. ..++.++|++..+++-.... +..++..+..|+..+.++.
T Consensus 180 ~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~ 256 (563)
T 1amu_A 180 KSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFEN---SLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILK 256 (563)
T ss_dssp CTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHH---TSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCH
T ss_pred CCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHH---hcCCCCCCEEEEeCCccHHHHHHHHHHHHHCCCEEEEcCh
Confidence 4567777643333 46899888665544333 45889999999888876543 3346778888998887654
Q ss_pred C--CCHHHHHHHHHhcCCeEEEEccccHHHH
Q 013850 112 V--YTVSELSKQVKDSNPKLVITVPELWDKV 140 (435)
Q Consensus 112 ~--~~~~~~~~~l~~~~~~~vi~~~~~~~~~ 140 (435)
. .+...+...+++.++.++...+..+..+
T Consensus 257 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l 287 (563)
T 1amu_A 257 DTINDFVKFEQYINQKEITVITLPPTYVVHL 287 (563)
T ss_dssp HHHTCHHHHHHHHHHTTCCEEEECHHHHTTS
T ss_pred HhhcCHHHHHHHHHHcCCcEEEeCHHHHHHH
Confidence 2 4677888889999999999887665544
No 63
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=75.58 E-value=14 Score=34.78 Aligned_cols=108 Identities=13% Similarity=0.100 Sum_probs=76.4
Q ss_pred CCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhccCCCcEEEecchHHHHHHHHHHHHhhhhcCcEEEecCC
Q 013850 190 KQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVGELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSMGK 269 (435)
Q Consensus 190 ~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~~i~~~~~ 269 (435)
.|+.+|++.........-....+|++.+...+..++..+.-....+|++...++-..-+- ..++.++..|+..+....
T Consensus 37 ~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~~gd~V~i~~~n~~e~~--~~~lA~~~~G~v~vpl~~ 114 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGSTGDRVVISAPQGLEYV--VAFLGALQAGRIAVPLSV 114 (480)
T ss_dssp STTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSCTTCEEEEECCSSHHHH--HHHHHHHHTTCEEEEECS
T ss_pred CCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCCCCCEEEEEcCCcHHHH--HHHHHHHHhCcEEEeeCC
Confidence 577888876542211111346799999999988887766554444588887776655433 367899999999987753
Q ss_pred ----CCHHHHHHHHHhcCceEEEecHHHHHHHHh
Q 013850 270 ----FDIEMALRAIEKYRVTVWWVVPPIILALAK 299 (435)
Q Consensus 270 ----~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~ 299 (435)
...+.+...+++.++.++...+.....+.+
T Consensus 115 ~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~ 148 (480)
T 3t5a_A 115 PQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQ 148 (480)
T ss_dssp CCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHH
T ss_pred CCccchHHHHHHHHHhCCCCEEEeChhHHHHHHH
Confidence 356788889999999999988876665544
No 64
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=73.20 E-value=16 Score=35.46 Aligned_cols=100 Identities=15% Similarity=0.144 Sum_probs=72.0
Q ss_pred cCCCceeeeecCCC-------cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCC-cHHHHHHHHHHcCcEEEecC
Q 013850 39 SYSSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSI-HFPICFLGVIAIGAIASTAN 110 (435)
Q Consensus 39 ~~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~-~~~~~~lA~~~~G~~~v~i~ 110 (435)
..|+.+|++.-.+| ..+|++.+...... ....++.++|++..++|-+. -....+++.+..|+..+...
T Consensus 211 ~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~----~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~ 286 (570)
T 4gr5_A 211 VGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG----QDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQS 286 (570)
T ss_dssp CCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS----CCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEECS
T ss_pred CCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh----hhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEcC
Confidence 45677787654433 56898887533221 23358899999999998764 34556778888999887765
Q ss_pred C-CCCHHHHHHHHHhcCCeEEEEccccHHHHhh
Q 013850 111 P-VYTVSELSKQVKDSNPKLVITVPELWDKVKD 142 (435)
Q Consensus 111 ~-~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~ 142 (435)
. ......+...+++.++.++...+..+..+..
T Consensus 287 ~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~ 319 (570)
T 4gr5_A 287 GQNPDPLEIGELVARHGVTMLQLSASLFNFLVD 319 (570)
T ss_dssp SSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHH
T ss_pred CccCCHHHHHHHHHHcCCcEEEecHHHHHHHHh
Confidence 4 4577888999999999999998877766543
No 65
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=72.58 E-value=16 Score=34.72 Aligned_cols=98 Identities=13% Similarity=0.113 Sum_probs=68.8
Q ss_pred cCCCceeeeecCCC-------cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCC--cHHHHHHHHHHcCcEEEec
Q 013850 39 SYSSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSI--HFPICFLGVIAIGAIASTA 109 (435)
Q Consensus 39 ~~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~--~~~~~~lA~~~~G~~~v~i 109 (435)
..|+.+|++...+| ..+|++.+...+..+... .++.++|++...+|-.. .+....+..+..|+..+.+
T Consensus 152 ~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~ 228 (503)
T 4fuq_A 152 RGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDY---WRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFL 228 (503)
T ss_dssp CCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEEC
T ss_pred CCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHH---hCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEc
Confidence 34677777644433 578999988777666554 48899999998887642 2334466777888887776
Q ss_pred CCCCCHHHHHHHHHhcCCeEEEEccccHHHHhh
Q 013850 110 NPVYTVSELSKQVKDSNPKLVITVPELWDKVKD 142 (435)
Q Consensus 110 ~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~ 142 (435)
+ ..+.+.+...++ ++.+++..+..+..+..
T Consensus 229 ~-~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~ 258 (503)
T 4fuq_A 229 P-KFDPDKILDLMA--RATVLMGVPTFYTRLLQ 258 (503)
T ss_dssp S-SCCHHHHHHHHT--TCCEEEECHHHHHHHHT
T ss_pred C-CCCHHHHHHHHh--hcCEEEEHHHHHHHHHh
Confidence 4 567777777777 78888888877766543
No 66
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=71.59 E-value=19 Score=35.69 Aligned_cols=100 Identities=13% Similarity=0.049 Sum_probs=69.3
Q ss_pred CCceeeeecCCC-------cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHH--HHHHHHHHcCcEEEecCC
Q 013850 41 SSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFP--ICFLGVIAIGAIASTANP 111 (435)
Q Consensus 41 p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~--~~~lA~~~~G~~~v~i~~ 111 (435)
++.+|++.-.+| ..+|.+.+......... ...++.++|++....+-+..+- ..+++.+..|++.+..+.
T Consensus 255 ~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~--~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~ 332 (652)
T 1pg4_A 255 AEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFK--YVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEG 332 (652)
T ss_dssp TTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHH--HHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECS
T ss_pred CCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHH--HhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEECC
Confidence 566776543323 46788877654422211 2357899999888887765443 345788999999888764
Q ss_pred C---CCHHHHHHHHHhcCCeEEEEccccHHHHhh
Q 013850 112 V---YTVSELSKQVKDSNPKLVITVPELWDKVKD 142 (435)
Q Consensus 112 ~---~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~ 142 (435)
. .+...+...+++.++.++.+.+..+..+..
T Consensus 333 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~ 366 (652)
T 1pg4_A 333 VPNWPTPARMCQVVDKHQVNILYTAPTAIRALMA 366 (652)
T ss_dssp CTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHh
Confidence 2 366788899999999999999887766543
No 67
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=71.34 E-value=16 Score=35.89 Aligned_cols=98 Identities=10% Similarity=0.159 Sum_probs=70.4
Q ss_pred CCCceeeeecC---CC----cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHH-HHHHHHHHcCcEEEecC-
Q 013850 40 YSSKLALIDAD---SD----ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFP-ICFLGVIAIGAIASTAN- 110 (435)
Q Consensus 40 ~p~~~a~~~~~---~~----~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~-~~~lA~~~~G~~~v~i~- 110 (435)
.|+.+|++... .| ..+|++.+...+.. ....++.++|++...++-+...- ..+++.+..|++.+..+
T Consensus 162 ~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~----~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~ 237 (620)
T 4dg8_A 162 AADQIAYINFSSGTTGRPKAIACTHAGITRLCLG----QSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDL 237 (620)
T ss_dssp CTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS----CGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCS
T ss_pred CCCCeEEEEECCCccccCeEEEEchHHHHHHHHH----HHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeCcc
Confidence 46777776333 22 56899887544322 23458899999999998875543 34678888899877763
Q ss_pred CCCCHHHHHHHHHhcCCeEEEEccccHHHHh
Q 013850 111 PVYTVSELSKQVKDSNPKLVITVPELWDKVK 141 (435)
Q Consensus 111 ~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~ 141 (435)
...+.+.+...+++.++.+++..+..+..+.
T Consensus 238 ~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~ 268 (620)
T 4dg8_A 238 GPLDPGVLRQLIGERGADSAWLTASLFNTLV 268 (620)
T ss_dssp SSCCHHHHHHHHHTTCCCEEEEEHHHHHHHH
T ss_pred ccCCHHHHHHHHHHhCCcEEEccHHHHHHHH
Confidence 2457888999999999999999887766653
No 68
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=71.13 E-value=15 Score=32.88 Aligned_cols=93 Identities=9% Similarity=-0.061 Sum_probs=59.1
Q ss_pred CCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCC-CCCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecCCCCCHHHHH
Q 013850 41 SSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLG-ITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELS 119 (435)
Q Consensus 41 p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g-~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~ 119 (435)
+.++.+-.++.+..=||++-. +..+...+.+.| +++|+.|.+....+-.-..+.++|..+|..++.+-|........
T Consensus 34 g~~i~~K~E~~~ptGSfK~R~--a~~~i~~a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~ 111 (334)
T 3tbh_A 34 KAKVVLKMECENPMASVKDRL--GFAIYDKAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERR 111 (334)
T ss_dssp SSEEEEEEGGGSTTSBTHHHH--HHHHHHHHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHH
T ss_pred CCEEEEEeCCCCCccCcHHHH--HHHHHHHHHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHH
Confidence 345555555434455666532 222223334445 48888865666667777888888889998655554554445556
Q ss_pred HHHHhcCCeEEEEccc
Q 013850 120 KQVKDSNPKLVITVPE 135 (435)
Q Consensus 120 ~~l~~~~~~~vi~~~~ 135 (435)
..++..++++++++..
T Consensus 112 ~~~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 112 CLLRIFGAEVILTPAA 127 (334)
T ss_dssp HHHHHTTCEEEEECGG
T ss_pred HHHHHCCCEEEEECCC
Confidence 7789999999999764
No 69
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=68.91 E-value=17 Score=35.44 Aligned_cols=100 Identities=6% Similarity=0.033 Sum_probs=68.9
Q ss_pred CCCceeeeecCCC-------cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHH--HHHHHHHcCcEEEecC
Q 013850 40 YSSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPI--CFLGVIAIGAIASTAN 110 (435)
Q Consensus 40 ~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~--~~lA~~~~G~~~v~i~ 110 (435)
.++.+|++.-.+| ..+|...+..... ......++.+++++....+....... .+++.+..|++.++.+
T Consensus 223 ~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~ 299 (580)
T 3etc_A 223 KNEDICLVYFSSGTAGFPKMVEHDNTYPLGHIL---TAKYWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYD 299 (580)
T ss_dssp CTTSEEEEEEECCSSSSCEEEEEETTHHHHHHH---HHHTTSCCCTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEEEE
T ss_pred CCCCcEEEEEeCCCCCCccEEEeccHHHHHHHH---HHHHhhCCCCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEEec
Confidence 4567777543333 3456654443222 22223588999998888877655433 3688899999888775
Q ss_pred -CCCCHHHHHHHHHhcCCeEEEEccccHHHHhh
Q 013850 111 -PVYTVSELSKQVKDSNPKLVITVPELWDKVKD 142 (435)
Q Consensus 111 -~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~ 142 (435)
.....+.+...+++.++.+++..+..+..+..
T Consensus 300 ~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~ 332 (580)
T 3etc_A 300 YDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIK 332 (580)
T ss_dssp CSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHh
Confidence 56678889999999999999999887776644
No 70
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=68.65 E-value=31 Score=33.06 Aligned_cols=99 Identities=9% Similarity=0.092 Sum_probs=71.2
Q ss_pred CCCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhhhcc-CCCcEEEecchHHHHHHHHHHHHhhhhcCcEEEec
Q 013850 189 VKQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQELVG-ELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM 267 (435)
Q Consensus 189 ~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~-~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~~i~~~ 267 (435)
..|+.++++....| -.+|++.+...+..++..+.-.+ ..+|++...++-+.-+ ...++.++..|+..+..
T Consensus 34 ~~p~~~a~~~~~~~-------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~--~~~~la~~~~Gav~vpl 104 (536)
T 3ni2_A 34 NHSSKPCLINGANG-------DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEF--VLAFLGASHRGAIITAA 104 (536)
T ss_dssp GSTTSEEEEETTTC-------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH--HHHHHHHHHHTCEEEEC
T ss_pred cCCCceEEEECCCC-------CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH--HHHHHHHHHhCCEEecc
Confidence 35778887653222 45899999888887776654433 2348888777765433 34678899999998887
Q ss_pred C-CCCHHHHHHHHHhcCceEEEecHHHHHH
Q 013850 268 G-KFDIEMALRAIEKYRVTVWWVVPPIILA 296 (435)
Q Consensus 268 ~-~~~~~~~~~~l~~~~~t~~~~~P~~~~~ 296 (435)
+ ....+.+...+++.++.++...+.....
T Consensus 105 ~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~ 134 (536)
T 3ni2_A 105 NPFSTPAELAKHAKASRAKLLITQACYYEK 134 (536)
T ss_dssp CTTCCHHHHHHHHHHHTEEEEEECGGGTHH
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEChHHHHH
Confidence 5 5678999999999999999887654443
No 71
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=67.33 E-value=37 Score=32.31 Aligned_cols=101 Identities=13% Similarity=0.104 Sum_probs=71.3
Q ss_pred CCCceeeeecCCC-------cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcH-HHHHHHHHHcCcEEEecCC
Q 013850 40 YSSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHF-PICFLGVIAIGAIASTANP 111 (435)
Q Consensus 40 ~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~-~~~~lA~~~~G~~~v~i~~ 111 (435)
.++.+|++...+| ..+|++.+...+..+.... ..++.+++++....+-+... +..+++++..|++.+.++.
T Consensus 143 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~~~~ 221 (521)
T 3l8c_A 143 KGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDA-AFDVPKQPQMLAQPPYSFDLSVMYWAPTLALGGTLFALPK 221 (521)
T ss_dssp CTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCT-TTCCCSSCEEECCSCTTSGGGHHHHHHHHHTTCEEEECCG
T ss_pred CCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhcc-ccCCCCCCeEEecCCccHHHHHHHHHHHHhcCCEEEEcCH
Confidence 4567777644433 5689999887655443321 24778899888887776443 4456778889998887765
Q ss_pred C--CCHHHHHHHHHhcCCeEEEEccccHHHHh
Q 013850 112 V--YTVSELSKQVKDSNPKLVITVPELWDKVK 141 (435)
Q Consensus 112 ~--~~~~~~~~~l~~~~~~~vi~~~~~~~~~~ 141 (435)
. .....+...+++.++.++...+.....+.
T Consensus 222 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 253 (521)
T 3l8c_A 222 ELVADFKQLFTTIAQLPVGIWTSTPSFADMAM 253 (521)
T ss_dssp GGTTCHHHHHHHHHHSCCSEEEECHHHHHHHH
T ss_pred HHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHh
Confidence 4 36778888999999999999887766543
No 72
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=67.13 E-value=18 Score=37.87 Aligned_cols=102 Identities=14% Similarity=0.129 Sum_probs=73.2
Q ss_pred cCCCceeeeecCCC-------cceeHHHHHHHHHHHHHHHH-hCCCCCCCEEEEEcCCCCc--HHHHHHHHHHcCcEEEe
Q 013850 39 SYSSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFR-HLGITKKDVVLIFAPNSIH--FPICFLGVIAIGAIAST 108 (435)
Q Consensus 39 ~~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~-~~g~~~gd~V~l~~~~~~~--~~~~~lA~~~~G~~~v~ 108 (435)
..|+.+|++...+| ..+|++.+...+........ ..++.++|++...+|-.-. +...++..+..|+..+.
T Consensus 222 ~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~ 301 (979)
T 3tsy_A 222 ISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILI 301 (979)
T ss_dssp CCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEE
T ss_pred CCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEE
Confidence 45778888644433 57899998776654433222 3478899999888886532 33446788889998887
Q ss_pred cCCCCCHHHHHHHHHhcCCeEEEEccccHHHHh
Q 013850 109 ANPVYTVSELSKQVKDSNPKLVITVPELWDKVK 141 (435)
Q Consensus 109 i~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~ 141 (435)
.+ ....+.+...+++.++.++...+..+..+.
T Consensus 302 ~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 333 (979)
T 3tsy_A 302 MP-KFEINLLLELIQRCKVTVAPMVPPIVLAIA 333 (979)
T ss_dssp CS-SCCHHHHHHHHHHHTCCEEEECHHHHHHHH
T ss_pred eC-CCCHHHHHHHHHHhCCeEEEcHHHHHHHHH
Confidence 64 567888899999999999999887666553
No 73
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=67.11 E-value=15 Score=35.45 Aligned_cols=99 Identities=10% Similarity=0.096 Sum_probs=70.4
Q ss_pred CCCceeeeecCCC-------cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcH--HHHHHHHHHcCcEEEecC
Q 013850 40 YSSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHF--PICFLGVIAIGAIASTAN 110 (435)
Q Consensus 40 ~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~--~~~~lA~~~~G~~~v~i~ 110 (435)
.|+.+|++...+| ..+|++.+...+..+... ..++.++|++...+|-...+ ...+++.+..|+..+.+.
T Consensus 174 ~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~--~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~ 251 (576)
T 3gqw_A 174 VPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHD--GIKLRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLR 251 (576)
T ss_dssp CTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHT--TSCCCTTCCEEECCCTTSHHHHHHHTHHHHHTTCCEEECC
T ss_pred CCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhc--ccCCCCcceEEEcCCccccccHHHHHHHHHhcCceEEEcc
Confidence 3677888755433 578999987665554332 25889999999988876543 345677788888877765
Q ss_pred CC---CCHHHHHHHHHhcCCeEEEEccccHHHH
Q 013850 111 PV---YTVSELSKQVKDSNPKLVITVPELWDKV 140 (435)
Q Consensus 111 ~~---~~~~~~~~~l~~~~~~~vi~~~~~~~~~ 140 (435)
+. ..+..+...+++.++.+++..+..+..+
T Consensus 252 ~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l 284 (576)
T 3gqw_A 252 TQDFAMRPLQWLKLISKNRGTVSVAPPFGYELC 284 (576)
T ss_dssp HHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHH
T ss_pred hhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHH
Confidence 41 3556788889999999999988766544
No 74
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=65.84 E-value=23 Score=31.80 Aligned_cols=94 Identities=15% Similarity=0.052 Sum_probs=62.9
Q ss_pred CCceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecCCCCCHHHHHH
Q 013850 41 SSKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSK 120 (435)
Q Consensus 41 p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~ 120 (435)
+-++.+-.+..+..=||++=- ....+.....+--+++|.+..+....+-.-..+.++|.++|..++.+-|.........
T Consensus 49 G~~IylK~E~lnptGSfK~Rg-A~~~i~~a~~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~ 127 (344)
T 3vc3_A 49 GAYVAVKQEMMQPTASIADRP-AYAMITDAEEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRV 127 (344)
T ss_dssp CSEEEEEEGGGSTTSBTTHHH-HHHHHHHHHHTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHH
T ss_pred CCEEEEEecCCCCCCCcHHHH-HHHHHHHHHHcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHH
Confidence 445555555434555666421 1233444444433578877777887788888899999999986665556655566677
Q ss_pred HHHhcCCeEEEEccc
Q 013850 121 QVKDSNPKLVITVPE 135 (435)
Q Consensus 121 ~l~~~~~~~vi~~~~ 135 (435)
.++..++++++++..
T Consensus 128 ~~~~~GA~Vv~v~~~ 142 (344)
T 3vc3_A 128 TMRAFGAELILTDPA 142 (344)
T ss_dssp HHHHTTCEEEEECGG
T ss_pred HHHHcCCEEEEECCC
Confidence 889999999999753
No 75
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=64.64 E-value=57 Score=32.28 Aligned_cols=97 Identities=14% Similarity=0.139 Sum_probs=71.9
Q ss_pred CCCCEEEEEeCCCCCCCccceeeccHHHHHHHHHHHhhhh-hcc-CCCcEEEecchHHHHHHHHHHHHhhhhcCcEEEec
Q 013850 190 KQTDAAALLYSSGTTGVSKGVILTHKNFIAASLMISAHQE-LVG-ELDHVVLCVLPMFHVFGLSVILYDQLQKGNCVVSM 267 (435)
Q Consensus 190 ~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~-~~~-~~~d~~l~~~~l~~~~g~~~~~~~~l~~G~~i~~~ 267 (435)
.|+.+|++.... .+| ....+|.+.+...+..++..+. -.+ ..+|++...+|...-+- ..++.++..|+..+..
T Consensus 95 ~pd~~Al~~~~~-~~~--~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v--~a~lA~~~~Gav~vpl 169 (663)
T 1ry2_A 95 TPNKKAIIFEGD-EPG--QGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAI--ITLLAISRIGAIHSVV 169 (663)
T ss_dssp CTTSEEEEEECS-STT--CCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHH--HHHHHHHHTTCEEEEC
T ss_pred CCCceEEEEEcC-CCC--ceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHH--HHHHHHHHcCCEEEee
Confidence 567888876432 122 2356999999998888877664 322 34499999988775443 3788999999988877
Q ss_pred -CCCCHHHHHHHHHhcCceEEEecH
Q 013850 268 -GKFDIEMALRAIEKYRVTVWWVVP 291 (435)
Q Consensus 268 -~~~~~~~~~~~l~~~~~t~~~~~P 291 (435)
+.+.+..+...+++.++.++.+..
T Consensus 170 ~~~~~~~~l~~~l~~~~~~~li~~~ 194 (663)
T 1ry2_A 170 FAGFSSNSLRDRINDGDSKVVITTD 194 (663)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEEES
T ss_pred CCCCCHHHHHHHHHhcCCeEEEEcc
Confidence 467899999999999999988754
No 76
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=58.14 E-value=32 Score=33.18 Aligned_cols=88 Identities=15% Similarity=0.123 Sum_probs=64.3
Q ss_pred cceeHHHHHHHHHHHHHHHH-----hCCCCCCCEEEEEcCCCCcHH-HHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcC
Q 013850 53 ESLSFSQFKSIVIKVSHSFR-----HLGITKKDVVLIFAPNSIHFP-ICFLGVIAIGAIASTANPVYTVSELSKQVKDSN 126 (435)
Q Consensus 53 ~~~Ty~el~~~~~~la~~L~-----~~g~~~gd~V~l~~~~~~~~~-~~~lA~~~~G~~~v~i~~~~~~~~~~~~l~~~~ 126 (435)
..+|++.+...+..++..+. ...+...+++....+...... ..++..+..|+..+........+.+...+++.+
T Consensus 193 V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~ 272 (562)
T 3ite_A 193 VRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELG 272 (562)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTT
T ss_pred EEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcC
Confidence 46899999888888777654 245778888888877765443 346778888988876554333456778889999
Q ss_pred CeEEEEccccHHHH
Q 013850 127 PKLVITVPELWDKV 140 (435)
Q Consensus 127 ~~~vi~~~~~~~~~ 140 (435)
+.++...+..+..+
T Consensus 273 ~t~~~~~P~~l~~~ 286 (562)
T 3ite_A 273 VTHAGIVPSLLDQT 286 (562)
T ss_dssp CCEEEECHHHHHHH
T ss_pred CCEEEcCHHHHhhc
Confidence 99999988766544
No 77
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=56.81 E-value=63 Score=26.62 Aligned_cols=92 Identities=15% Similarity=0.135 Sum_probs=54.6
Q ss_pred cEEEecch--HHHHHHHHHHHHhhhhcCcEEEec-CCCCHHHHHHHHHhcCceEEEe------cHHH--HHHHHhccccc
Q 013850 236 HVVLCVLP--MFHVFGLSVILYDQLQKGNCVVSM-GKFDIEMALRAIEKYRVTVWWV------VPPI--ILALAKNSLVR 304 (435)
Q Consensus 236 d~~l~~~~--l~~~~g~~~~~~~~l~~G~~i~~~-~~~~~~~~~~~l~~~~~t~~~~------~P~~--~~~l~~~~~~~ 304 (435)
.+++...+ =.|..|........-..|..++.. ....++.+.+.+.++++.++.+ ++++ +..+.+.....
T Consensus 93 ~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l~~~ 172 (215)
T 3ezx_A 93 GLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRLNEE 172 (215)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHHHHT
T ss_pred CeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHHHHc
Confidence 34444433 346777754445555667777666 4568999999999999987766 2322 33333332222
Q ss_pred CCCCcceeEEEecCCCCcHHHHHHH
Q 013850 305 KFDISSLKLVGSGAAPLGKELMEDC 329 (435)
Q Consensus 305 ~~~l~~lr~i~~gG~~l~~~~~~~~ 329 (435)
+.+ ..++ +++||.+++++..+.+
T Consensus 173 ~~~-~~v~-v~vGG~~~~~~~a~~i 195 (215)
T 3ezx_A 173 KLR-DSVK-CMFGGAPVSDKWIEEI 195 (215)
T ss_dssp TCG-GGSE-EEEESSSCCHHHHHHH
T ss_pred CCC-CCCE-EEEECCCCCHHHHHHh
Confidence 211 2344 6788888887765543
No 78
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=55.41 E-value=35 Score=37.00 Aligned_cols=100 Identities=12% Similarity=0.141 Sum_probs=72.4
Q ss_pred cCCCceeeeecCCC-------cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHH-HHHHHHHcCcEEEecC
Q 013850 39 SYSSKLALIDADSD-------ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPI-CFLGVIAIGAIASTAN 110 (435)
Q Consensus 39 ~~p~~~a~~~~~~~-------~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~-~~lA~~~~G~~~v~i~ 110 (435)
..|+.+|++.-.+| ..+|.+.+... .......++.++|++..+.+-+.+..+ -+++.+..|+..+..+
T Consensus 604 ~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~----~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~ 679 (1304)
T 2vsq_A 604 IDPNDPAYIMYTSGTTGKPKGNITTHANIQGL----VKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIAD 679 (1304)
T ss_dssp CCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH----HSSCCSSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECC
T ss_pred CCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH----HHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEECC
Confidence 35677787644333 46899887642 122234588999999998888766544 4678888899888776
Q ss_pred CC--CCHHHHHHHHHhcCCeEEEEccccHHHHhh
Q 013850 111 PV--YTVSELSKQVKDSNPKLVITVPELWDKVKD 142 (435)
Q Consensus 111 ~~--~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~ 142 (435)
+. .+...+...+++.++.++...+..+..+..
T Consensus 680 ~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~ 713 (1304)
T 2vsq_A 680 EHTLLDTERLTDLILQENVNVMFATTALFNLLTD 713 (1304)
T ss_dssp GGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHh
Confidence 53 567889999999999999998877766543
No 79
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Probab=52.97 E-value=52 Score=29.04 Aligned_cols=92 Identities=17% Similarity=0.039 Sum_probs=55.3
Q ss_pred CceeeeecCCCcceeHHHHHHHHHHHHHHHHhCC-CCCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecCCCCCHHHHHH
Q 013850 42 SKLALIDADSDESLSFSQFKSIVIKVSHSFRHLG-ITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSK 120 (435)
Q Consensus 42 ~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g-~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~ 120 (435)
.++.+-.++.+..-||++-... ..+.. +.+.| +++|....+....+-.-..+.++|.++|..++.+-|......-..
T Consensus 30 ~~v~~K~E~~~ptGSfK~R~a~-~~l~~-a~~~G~~~~~~~~vv~assGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~ 107 (322)
T 1z7w_A 30 GRVAAKLEMMEPCSSVKDRIGF-SMISD-AEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRI 107 (322)
T ss_dssp SEEEEEEGGGSTTSBTHHHHHH-HHHHH-HHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHH
T ss_pred ceEEEEecccCCCCchHHHHHH-HHHHH-HHHcCCCCCCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHH
Confidence 3455544433345566653221 22233 33445 356754445556666777778888899986655545444445566
Q ss_pred HHHhcCCeEEEEccc
Q 013850 121 QVKDSNPKLVITVPE 135 (435)
Q Consensus 121 ~l~~~~~~~vi~~~~ 135 (435)
.++..++++++++.+
T Consensus 108 ~~~~~GA~V~~~~~~ 122 (322)
T 1z7w_A 108 ILLAFGVELVLTDPA 122 (322)
T ss_dssp HHHHTTCEEEEECGG
T ss_pred HHHHcCCEEEEeCCC
Confidence 788999999999854
No 80
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Probab=51.84 E-value=53 Score=30.51 Aligned_cols=91 Identities=15% Similarity=0.008 Sum_probs=56.5
Q ss_pred CceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCC-CCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecCCCCCHHHHHH
Q 013850 42 SKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGI-TKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSK 120 (435)
Q Consensus 42 ~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~-~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~ 120 (435)
.++.+-.++.+..-+|++-.. ...+. ..++.|. ++|....+....+-.-..+.++|.++|..++.+-|.........
T Consensus 138 ~~I~lK~E~lnptGSfKdRgA-~~~i~-~A~~~G~l~~g~~~VV~aSsGNhG~AlA~aAa~~Gl~~~IvmP~~~s~~k~~ 215 (430)
T 4aec_A 138 ANIAAKLEIMEPCCSVKDRIG-YSMVT-DAEQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRV 215 (430)
T ss_dssp SEEEEEEGGGSTTSBTTHHHH-HHHHH-HHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHH
T ss_pred CeEEEEECCCCCCCCHHHHHH-HHHHH-HHHHcCCCCCCCcEEEEECCCHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHH
Confidence 345554443333445554221 12222 2344564 67765556666677778888889999986665555555555667
Q ss_pred HHHhcCCeEEEEcc
Q 013850 121 QVKDSNPKLVITVP 134 (435)
Q Consensus 121 ~l~~~~~~~vi~~~ 134 (435)
.++..++++++++.
T Consensus 216 ~~r~~GAeVv~v~~ 229 (430)
T 4aec_A 216 LLKAFGAELVLTDP 229 (430)
T ss_dssp HHHHTTCEEEEECG
T ss_pred HHHHCCCEEEEECC
Confidence 78999999999974
No 81
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=47.77 E-value=46 Score=30.10 Aligned_cols=62 Identities=11% Similarity=0.001 Sum_probs=38.6
Q ss_pred HHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecCCC-----CCHHHHHHHHHhcC--CeEEEEc
Q 013850 69 HSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPV-----YTVSELSKQVKDSN--PKLVITV 133 (435)
Q Consensus 69 ~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~-----~~~~~~~~~l~~~~--~~~vi~~ 133 (435)
..|+..++++||.|.+-.+.... ..-++...|+.++.++.+ .+.+.++..+..-+ +++|+..
T Consensus 68 ~al~~l~~~~Gd~Vi~~~~~~~~---~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~~ 136 (377)
T 3ju7_A 68 AAIQLKKRKKGKYALMPSFTFPA---TPLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVPY 136 (377)
T ss_dssp HHHHHHSCTTCCEEEEESSSCTH---HHHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECCB
T ss_pred HHHHHcCCCCcCEEEECCCCcHH---HHHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEEE
Confidence 33445578999988876654433 344566789876655432 36778887774334 6777643
No 82
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Probab=45.71 E-value=87 Score=27.43 Aligned_cols=91 Identities=10% Similarity=0.012 Sum_probs=53.9
Q ss_pred CceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCC-CCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecCCCCCHHHHHH
Q 013850 42 SKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGI-TKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSK 120 (435)
Q Consensus 42 ~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~-~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~ 120 (435)
.++.+-.++.+..-+|++-.. ..+...+.+.|. ++|+.|.. ...+-.-..+.++|.+.|..++.+-|......-..
T Consensus 31 ~~i~~K~E~~~ptgSfK~R~a--~~~l~~a~~~g~~~~g~~vv~-assGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~ 107 (313)
T 2q3b_A 31 ADIVAKLEFFNPANSVKDRIG--VAMLQAAEQAGLIKPDTIILE-PTSGNTGIALAMVCAARGYRCVLTMPETMSLERRM 107 (313)
T ss_dssp SEEEEEEGGGSTTSBTHHHHH--HHHHHHHHHTTCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHH
T ss_pred cEEEEEehhcCCCCcHHHHHH--HHHHHHHHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHH
Confidence 345553443334556766332 222233344454 66665544 55566666777788899986555444443344556
Q ss_pred HHHhcCCeEEEEccc
Q 013850 121 QVKDSNPKLVITVPE 135 (435)
Q Consensus 121 ~l~~~~~~~vi~~~~ 135 (435)
.++..++++++++..
T Consensus 108 ~~~~~Ga~v~~~~~~ 122 (313)
T 2q3b_A 108 LLRAYGAELILTPGA 122 (313)
T ss_dssp HHHHTTCEEEEECGG
T ss_pred HHHHCCCEEEEeCCC
Confidence 778999999999863
No 83
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=45.00 E-value=45 Score=29.65 Aligned_cols=77 Identities=14% Similarity=0.105 Sum_probs=49.5
Q ss_pred ceeHHHHHHHHHHH--H-HHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCeEE
Q 013850 54 SLSFSQFKSIVIKV--S-HSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV 130 (435)
Q Consensus 54 ~~Ty~el~~~~~~l--a-~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v 130 (435)
.+++.+........ | +.|+..++++|++|+|...-+.-.+++++|....|+.++.+..+ .+. ....+..+++.+
T Consensus 136 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~--~~r-~~~~~~~Ga~~~ 212 (348)
T 4eez_A 136 GLDPIEASSITCAGVTTYKAIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDIN--QDK-LNLAKKIGADVT 212 (348)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESC--HHH-HHHHHHTTCSEE
T ss_pred CCCHHHHhhcccceeeEEeeecccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECc--HHH-hhhhhhcCCeEE
Confidence 46776644333222 2 33455689999999999876666676677666667766655433 333 456677888887
Q ss_pred EEc
Q 013850 131 ITV 133 (435)
Q Consensus 131 i~~ 133 (435)
+-.
T Consensus 213 i~~ 215 (348)
T 4eez_A 213 INS 215 (348)
T ss_dssp EEC
T ss_pred EeC
Confidence 754
No 84
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=42.01 E-value=1e+02 Score=27.72 Aligned_cols=61 Identities=21% Similarity=0.205 Sum_probs=38.9
Q ss_pred HHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecCCC----CCHHHHHHHHHhc--CCeEEEEcc
Q 013850 71 FRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPV----YTVSELSKQVKDS--NPKLVITVP 134 (435)
Q Consensus 71 L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~----~~~~~~~~~l~~~--~~~~vi~~~ 134 (435)
++..++++||.|.+..+...... .++...|+.++.++.. .+.+.++..++.. ++++|+...
T Consensus 64 ~~~l~~~~gd~Vl~~~~~~~~~~---~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~v~~~~ 130 (394)
T 1o69_A 64 LRVAGVKQDDIVLASSFTFIASV---APICYLKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILTH 130 (394)
T ss_dssp HHHTTCCTTCEEEEESSSCGGGT---HHHHHTTCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEEC
T ss_pred HHHcCCCCCCEEEECCCccHHHH---HHHHHcCCEEEEEEeCCCCCcCHHHHHHHHhcccCCceEEEEEC
Confidence 34445789998888777654443 3444578766665532 3567888877764 567777654
No 85
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*
Probab=41.21 E-value=88 Score=27.88 Aligned_cols=91 Identities=11% Similarity=-0.038 Sum_probs=53.1
Q ss_pred CceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCC-CCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecCCCCCHHHHHH
Q 013850 42 SKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGI-TKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSK 120 (435)
Q Consensus 42 ~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~-~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~ 120 (435)
.++.+-.++.+..-||++.... ..+.... +.|. ++|+.|.... .+-.-..+.++|...|..++.+-|......-..
T Consensus 42 ~~v~~K~E~~~ptGSfKdR~a~-~~l~~a~-~~g~~~~g~~vv~aS-sGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~ 118 (343)
T 2pqm_A 42 TRILVKLEYFNPMSSVKDRVGF-NIVYQAI-KDGRLKPGMEIIEST-SGNTGIALCQAGAVFGYRVNIAMPSTMSVERQM 118 (343)
T ss_dssp CEEEEEEGGGSTTSBTHHHHHH-HHHHHHH-HHTSSCTTCEEEEEC-SSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHH
T ss_pred cEEEEEeccCCCCCChHHHHHH-HHHHHHH-HcCCCCCCCEEEEEC-CcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHH
Confidence 3455544443455666654222 2233333 3353 6777555554 355666677778889975554444433444566
Q ss_pred HHHhcCCeEEEEccc
Q 013850 121 QVKDSNPKLVITVPE 135 (435)
Q Consensus 121 ~l~~~~~~~vi~~~~ 135 (435)
.++..++++++++..
T Consensus 119 ~~~~~GA~V~~~~~~ 133 (343)
T 2pqm_A 119 IMKAFGAELILTEGK 133 (343)
T ss_dssp HHHHTTCEEEEECGG
T ss_pred HHHHCCCEEEEECCC
Confidence 788999999999863
No 86
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}
Probab=40.52 E-value=94 Score=27.10 Aligned_cols=91 Identities=13% Similarity=0.001 Sum_probs=53.3
Q ss_pred CceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCC-CCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecCCCCCHHHHHH
Q 013850 42 SKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGI-TKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSK 120 (435)
Q Consensus 42 ~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~-~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~ 120 (435)
.++.+-.++.+..-||++-... ..+. .+.+.|. ++|+.|.. ...+-.-..+.++|.+.|..++.+-|......-..
T Consensus 29 ~~i~~K~E~~~ptgSfK~R~a~-~~l~-~a~~~g~~~~g~~vv~-assGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~ 105 (308)
T 2egu_A 29 ADVYLKLEFMNPGSSVKDRIAL-AMIE-AAEKAGKLKPGDTIVE-PTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRN 105 (308)
T ss_dssp CEEEEEEGGGSTTSBTHHHHHH-HHHH-HHHHTTCCCTTCEEEE-ECCHHHHHHHHHHHHHHTCEEEEEEESCSCHHHHH
T ss_pred CEEEEEecccCCCCChHHHHHH-HHHH-HHHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHH
Confidence 3455544433445566654322 2222 3334454 66665544 55555666777788889986555444443344556
Q ss_pred HHHhcCCeEEEEccc
Q 013850 121 QVKDSNPKLVITVPE 135 (435)
Q Consensus 121 ~l~~~~~~~vi~~~~ 135 (435)
.++..++++++++..
T Consensus 106 ~~~~~GA~v~~~~~~ 120 (308)
T 2egu_A 106 LLRAYGAELVLTPGA 120 (308)
T ss_dssp HHHHTTCEEEEECGG
T ss_pred HHHHcCCEEEEECCC
Confidence 778999999999864
No 87
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*
Probab=40.30 E-value=1e+02 Score=27.20 Aligned_cols=89 Identities=10% Similarity=0.002 Sum_probs=54.1
Q ss_pred ceeeeecCCCcceeHHHHHHHHHHHHHHHHhCC-CCCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecCCCCCHHHHHHH
Q 013850 43 KLALIDADSDESLSFSQFKSIVIKVSHSFRHLG-ITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQ 121 (435)
Q Consensus 43 ~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g-~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~ 121 (435)
++.+-.++.+..=||++-. +..+...+.+.| +++++.|+.. ..+-.-..+.++|.++|..++.+-|..........
T Consensus 38 ~v~~K~E~~~ptGSfK~R~--a~~~l~~a~~~g~l~~~~~vv~a-SsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~ 114 (325)
T 3dwg_A 38 RLWAKLEDRNPTGSIKDRP--AVRMIEQAEADGLLRPGATILEP-TSGNTGISLAMAARLKGYRLICVMPENTSVERRQL 114 (325)
T ss_dssp EEEEEETTSSTTSBTTHHH--HHHHHHHHHHTTCCCTTCEEEEE-CSSHHHHHHHHHHHHHTCEEEEEEESSSCHHHHHH
T ss_pred EEEEEECCCCCCCChHHHH--HHHHHHHHHHcCCCCCCCEEEEe-CCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHH
Confidence 4555454434444565422 222222233445 4677766554 45667777788888899866555555444555677
Q ss_pred HHhcCCeEEEEcc
Q 013850 122 VKDSNPKLVITVP 134 (435)
Q Consensus 122 l~~~~~~~vi~~~ 134 (435)
++..++++++++.
T Consensus 115 ~~~~GA~V~~~~~ 127 (325)
T 3dwg_A 115 LELYGAQIIFSAA 127 (325)
T ss_dssp HHHHTCEEEEECS
T ss_pred HHHCCCEEEEECC
Confidence 8999999999985
No 88
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=39.75 E-value=1.1e+02 Score=27.17 Aligned_cols=60 Identities=20% Similarity=0.256 Sum_probs=37.3
Q ss_pred CCCCCCEEEEEcCCCC------cHHHHHHHH-HHcCcEEEecCCCC--------C----HHHHHHHHHhcCCeEEEEcc
Q 013850 75 GITKKDVVLIFAPNSI------HFPICFLGV-IAIGAIASTANPVY--------T----VSELSKQVKDSNPKLVITVP 134 (435)
Q Consensus 75 g~~~gd~V~l~~~~~~------~~~~~~lA~-~~~G~~~v~i~~~~--------~----~~~~~~~l~~~~~~~vi~~~ 134 (435)
-+++||+|+|++|.+. +-+-..... -..|..++.-+.-. + ++++...+.+-.++.|+|..
T Consensus 8 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~r 86 (327)
T 4h1h_A 8 KLKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVI 86 (327)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcC
Confidence 4789999999999863 112222222 23477766543221 1 35566777788899999973
No 89
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Probab=39.07 E-value=1e+02 Score=27.16 Aligned_cols=77 Identities=9% Similarity=0.149 Sum_probs=48.5
Q ss_pred cceeHHHHHHHHHH--H-HHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCeE
Q 013850 53 ESLSFSQFKSIVIK--V-SHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKL 129 (435)
Q Consensus 53 ~~~Ty~el~~~~~~--l-a~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~ 129 (435)
..+++.+....... . -+.|...++++|++|+|...-++-.+++.+|- ..|+.++.+.. +.+.+ ..+++.+++.
T Consensus 138 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~Vi~~~~--~~~~~-~~~~~lGa~~ 213 (340)
T 3s2e_A 138 DKVGFVEIAPILCAGVTVYKGLKVTDTRPGQWVVISGIGGLGHVAVQYAR-AMGLRVAAVDI--DDAKL-NLARRLGAEV 213 (340)
T ss_dssp TTSCHHHHGGGGTHHHHHHHHHHTTTCCTTSEEEEECCSTTHHHHHHHHH-HTTCEEEEEES--CHHHH-HHHHHTTCSE
T ss_pred CCCCHHHhhcccchhHHHHHHHHHcCCCCCCEEEEECCCHHHHHHHHHHH-HCCCeEEEEeC--CHHHH-HHHHHcCCCE
Confidence 35677765432221 1 23455568999999999887556666666665 56887665533 34443 3567788888
Q ss_pred EEEc
Q 013850 130 VITV 133 (435)
Q Consensus 130 vi~~ 133 (435)
++..
T Consensus 214 ~i~~ 217 (340)
T 3s2e_A 214 AVNA 217 (340)
T ss_dssp EEET
T ss_pred EEeC
Confidence 7754
No 90
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=39.06 E-value=92 Score=28.82 Aligned_cols=25 Identities=8% Similarity=-0.128 Sum_probs=12.6
Q ss_pred HHHHHHHHhhCCCCeeecCcCcccc
Q 013850 323 KELMEDCQKNIPGATIFQGYGMTET 347 (435)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~yG~tE~ 347 (435)
.+...++.+.+.-..+...+|..|+
T Consensus 357 ~~~~~~~~~~l~~~~~~~s~G~~~s 381 (430)
T 3ri6_A 357 KEASYRFMDALKLIRRATNIHDNKS 381 (430)
T ss_dssp HHHHHHHHHHCSSSEECSCCSCSSC
T ss_pred HHHHHHHHHhCCcceecCCCCCCCc
Confidence 4444555555443344445566664
No 91
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=38.92 E-value=98 Score=25.16 Aligned_cols=56 Identities=11% Similarity=0.035 Sum_probs=42.3
Q ss_pred CCEEEEEcCCC----CcHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCeEEEEcc
Q 013850 79 KDVVLIFAPNS----IHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVP 134 (435)
Q Consensus 79 gd~V~l~~~~~----~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~ 134 (435)
+.+|.+.+..+ ....++...+-..|.-++.+..+.+.+++...+++.+|++|..+.
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~~~~d~v~lS~ 147 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKYQPDIVGMSA 147 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHHHCCSEEEEEC
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEec
Confidence 33566665543 334444555557799999999999999999999999999999875
No 92
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=38.82 E-value=50 Score=22.07 Aligned_cols=45 Identities=11% Similarity=0.051 Sum_probs=30.9
Q ss_pred cceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCc
Q 013850 53 ESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGA 104 (435)
Q Consensus 53 ~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~ 104 (435)
..+.+.+|.+. +.+.++.+++.|.++|..+.....+...+..+|.
T Consensus 22 ~~ip~~~l~~~-------~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~ 66 (85)
T 2jtq_A 22 INIPLKEVKER-------IATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGY 66 (85)
T ss_dssp EECCHHHHHHH-------HHHHCCCTTSEEEEEESSSHHHHHHHHHHHHTTC
T ss_pred EEcCHHHHHHH-------HHHhCCCCCCcEEEEcCCCchHHHHHHHHHHcCC
Confidence 45666666543 3344667788899999888777777777777775
No 93
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=38.73 E-value=1.1e+02 Score=27.82 Aligned_cols=61 Identities=10% Similarity=0.052 Sum_probs=38.3
Q ss_pred CCCCCCCEEEEEcCCCCc------HHHHHHHHH-HcCcEEEecCCCC--------C----HHHHHHHHHhcCCeEEEEcc
Q 013850 74 LGITKKDVVLIFAPNSIH------FPICFLGVI-AIGAIASTANPVY--------T----VSELSKQVKDSNPKLVITVP 134 (435)
Q Consensus 74 ~g~~~gd~V~l~~~~~~~------~~~~~lA~~-~~G~~~v~i~~~~--------~----~~~~~~~l~~~~~~~vi~~~ 134 (435)
.-+++||+|+|++|.+.- -+-.....+ ..|..++.-+... + ++++...+.+-.+++|+|..
T Consensus 38 ~~Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~r 117 (371)
T 3tla_A 38 APLAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTI 117 (371)
T ss_dssp CCCCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESC
T ss_pred CCCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 368999999999998742 222223333 3587776543211 1 25556666777889999963
No 94
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Probab=38.10 E-value=86 Score=27.47 Aligned_cols=76 Identities=22% Similarity=0.230 Sum_probs=47.5
Q ss_pred cceeHHHHHHHHHH--HH-HHHHhCCCCCCCEEEEEcCCC-CcHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCe
Q 013850 53 ESLSFSQFKSIVIK--VS-HSFRHLGITKKDVVLIFAPNS-IHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPK 128 (435)
Q Consensus 53 ~~~Ty~el~~~~~~--la-~~L~~~g~~~gd~V~l~~~~~-~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~ 128 (435)
..+++.+....... .| +.|+..++++|++|+|....+ +-..++.+| -..|+.++.+. +.++ ...+++.+++
T Consensus 124 ~~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~vlV~Ga~G~vG~~a~q~a-~~~Ga~vi~~~---~~~~-~~~~~~lGa~ 198 (321)
T 3tqh_A 124 EKLSFLQAASLPTAGLTALQALNQAEVKQGDVVLIHAGAGGVGHLAIQLA-KQKGTTVITTA---SKRN-HAFLKALGAE 198 (321)
T ss_dssp TTSCHHHHHHSHHHHHHHHHHHHHTTCCTTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEE---CHHH-HHHHHHHTCS
T ss_pred CCCCHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHH-HHcCCEEEEEe---ccch-HHHHHHcCCC
Confidence 35677775443322 22 334567899999999997444 555555555 46688766543 3444 5567788888
Q ss_pred EEEEc
Q 013850 129 LVITV 133 (435)
Q Consensus 129 ~vi~~ 133 (435)
.++..
T Consensus 199 ~~i~~ 203 (321)
T 3tqh_A 199 QCINY 203 (321)
T ss_dssp EEEET
T ss_pred EEEeC
Confidence 77643
No 95
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=36.33 E-value=1.2e+02 Score=26.95 Aligned_cols=55 Identities=9% Similarity=0.233 Sum_probs=35.8
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecCCC-------CCHHHHHHHHHhcCCeEEEEc
Q 013850 76 ITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPV-------YTVSELSKQVKDSNPKLVITV 133 (435)
Q Consensus 76 ~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~-------~~~~~~~~~l~~~~~~~vi~~ 133 (435)
+++||.|++..+.- . ....++...|+.++.++.. .+.+.++..++..++++|+..
T Consensus 106 ~~~gd~vl~~~~~~-~--~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~ 167 (391)
T 3dzz_A 106 TSPGDQILVQEPVY-N--MFYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFC 167 (391)
T ss_dssp SCTTCEEEECSSCC-H--HHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEE
T ss_pred CCCCCeEEECCCCc-H--HHHHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEE
Confidence 46788776554433 2 2344566778877776653 567888888876677777654
No 96
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} SCOP: c.79.1.0 PDB: 3l6r_A* 3hmk_A* 3l6c_A*
Probab=35.56 E-value=57 Score=29.21 Aligned_cols=54 Identities=11% Similarity=-0.005 Sum_probs=37.5
Q ss_pred EEEcCCCCcHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCeEEEEcccc
Q 013850 83 LIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPEL 136 (435)
Q Consensus 83 ~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~ 136 (435)
.+....+-.-..+.++|.+.|..++.+-|..........++..++++++++...
T Consensus 79 vv~~SsGNhg~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~v~~~~ 132 (346)
T 3l6b_A 79 VVTHSSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPSD 132 (346)
T ss_dssp EEEECSSHHHHHHHHHHHHTTCCEEEEEETTSCHHHHHHHHHTTCEEEEECSSH
T ss_pred EEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCH
Confidence 333345666677778899999855544454444555677899999999998654
No 97
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=35.06 E-value=1.4e+02 Score=22.75 Aligned_cols=75 Identities=7% Similarity=-0.002 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHH---hcCCeEEEEccccHHH
Q 013850 63 IVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVK---DSNPKLVITVPELWDK 139 (435)
Q Consensus 63 ~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~l~---~~~~~~vi~~~~~~~~ 139 (435)
+...+...|.+. ++.++.|+++.....-.+.-.+...|..+..++...+..+...+++ .-..+++++++.....
T Consensus 22 K~~~L~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G 98 (163)
T 2hjv_A 22 KFSLLKDVLMTE---NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARG 98 (163)
T ss_dssp HHHHHHHHHHHH---CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTTT
T ss_pred HHHHHHHHHHhc---CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcC
Confidence 334444545442 3456777776654444444444556888888999888766655554 4567788877544433
Q ss_pred H
Q 013850 140 V 140 (435)
Q Consensus 140 ~ 140 (435)
+
T Consensus 99 l 99 (163)
T 2hjv_A 99 I 99 (163)
T ss_dssp C
T ss_pred C
Confidence 3
No 98
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=34.98 E-value=1.2e+02 Score=26.98 Aligned_cols=60 Identities=13% Similarity=0.109 Sum_probs=37.3
Q ss_pred CCCCCCEEEEEcCCCCc------HHHHHHHHH-HcCcEEEecCCCC--------C----HHHHHHHHHhcCCeEEEEcc
Q 013850 75 GITKKDVVLIFAPNSIH------FPICFLGVI-AIGAIASTANPVY--------T----VSELSKQVKDSNPKLVITVP 134 (435)
Q Consensus 75 g~~~gd~V~l~~~~~~~------~~~~~lA~~-~~G~~~v~i~~~~--------~----~~~~~~~l~~~~~~~vi~~~ 134 (435)
-+++||+|+|++|.+.- -+-.....+ ..|..++.-.... + ++++...+.+-.+++|+|..
T Consensus 9 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~r 87 (336)
T 3sr3_A 9 SLKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTI 87 (336)
T ss_dssp CCCTTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 47899999999998842 222223333 3587766532111 1 25566677777889999964
No 99
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=34.94 E-value=1.4e+02 Score=26.42 Aligned_cols=60 Identities=17% Similarity=0.236 Sum_probs=37.5
Q ss_pred CCCCCCEEEEEcCCCCcH------HHHHHHHH-HcCcEEEecCCCC--------C----HHHHHHHHHhcCCeEEEEcc
Q 013850 75 GITKKDVVLIFAPNSIHF------PICFLGVI-AIGAIASTANPVY--------T----VSELSKQVKDSNPKLVITVP 134 (435)
Q Consensus 75 g~~~gd~V~l~~~~~~~~------~~~~lA~~-~~G~~~v~i~~~~--------~----~~~~~~~l~~~~~~~vi~~~ 134 (435)
-+++||+|+|++|.+.-. +-.....+ ..|..++.-+... + ++++...+.+-.+++|+|..
T Consensus 8 ~L~~GD~I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~r 86 (331)
T 4e5s_A 8 KLKKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTTL 86 (331)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 478999999999987521 22223333 3577776533211 1 25566677777889999963
No 100
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Probab=34.93 E-value=1.3e+02 Score=26.82 Aligned_cols=79 Identities=15% Similarity=0.170 Sum_probs=48.3
Q ss_pred ceeHHHHHHHH--HHHH-HHHHh-CCCCCCCEEEEEcCC-CCcHHHHHHHHHHcCcEE-EecCCCCCHHHHHHHHHhcCC
Q 013850 54 SLSFSQFKSIV--IKVS-HSFRH-LGITKKDVVLIFAPN-SIHFPICFLGVIAIGAIA-STANPVYTVSELSKQVKDSNP 127 (435)
Q Consensus 54 ~~Ty~el~~~~--~~la-~~L~~-~g~~~gd~V~l~~~~-~~~~~~~~lA~~~~G~~~-v~i~~~~~~~~~~~~l~~~~~ 127 (435)
.+++.+..... --.| +.|.+ .++++|++|+|.... .+-.+++.+|- ..|+.. +.....-..++....++..++
T Consensus 139 ~l~~~~Aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak-~~Ga~vi~~~~~~~~~~~~~~~~~~lGa 217 (357)
T 1zsy_A 139 DIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAA-ALGLRTINVVRDRPDIQKLSDRLKSLGA 217 (357)
T ss_dssp SSCHHHHHHTTSHHHHHHHHHHHSSCCCTTCEEEESSTTSHHHHHHHHHHH-HHTCEEEEEECCCSCHHHHHHHHHHTTC
T ss_pred CCCHHHHhhhcccHHHHHHHHHHHhccCCCCEEEEeCCcCHHHHHHHHHHH-HcCCEEEEEecCccchHHHHHHHHhcCC
Confidence 46777654321 1223 23433 489999999999974 46666666554 468744 444444344445566788899
Q ss_pred eEEEEc
Q 013850 128 KLVITV 133 (435)
Q Consensus 128 ~~vi~~ 133 (435)
+.++..
T Consensus 218 ~~vi~~ 223 (357)
T 1zsy_A 218 EHVITE 223 (357)
T ss_dssp SEEEEH
T ss_pred cEEEec
Confidence 888754
No 101
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=33.87 E-value=2.4e+02 Score=25.19 Aligned_cols=55 Identities=13% Similarity=0.088 Sum_probs=37.6
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhc---CCeEEEEcc
Q 013850 76 ITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDS---NPKLVITVP 134 (435)
Q Consensus 76 ~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~l~~~---~~~~vi~~~ 134 (435)
+++||.|++..+... ....++...|+.+++++. .+.+.++..++.. ++++|+++.
T Consensus 124 ~~~gd~V~~~~p~~~---~~~~~~~~~g~~~~~v~~-~d~~~l~~~l~~~~~~~~~~v~~~~ 181 (398)
T 3a2b_A 124 MGRNDYILLDERDHA---SIIDGSRLSFSKVIKYGH-NNMEDLRAKLSRLPEDSAKLICTDG 181 (398)
T ss_dssp SCTTCEEEEETTCCH---HHHHHHHHSSSEEEEECT-TCHHHHHHHHHTSCSSSCEEEEEES
T ss_pred hCCCCEEEECCccCH---HHHHHHHHcCCceEEeCC-CCHHHHHHHHHhhccCCceEEEEeC
Confidence 578898877765433 234456667888887764 5678888888765 677777654
No 102
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=33.74 E-value=95 Score=27.82 Aligned_cols=59 Identities=19% Similarity=0.234 Sum_probs=32.9
Q ss_pred HHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecC--CC---CCHHHHHHHHHhcCCeEEEEc
Q 013850 71 FRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTAN--PV---YTVSELSKQVKDSNPKLVITV 133 (435)
Q Consensus 71 L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~--~~---~~~~~~~~~l~~~~~~~vi~~ 133 (435)
++..++++||.|++..+.... ...++...|+.++.++ +. .+.+.++..++. ++++|+..
T Consensus 71 ~~~~~~~~gd~Vl~~~~~~~~---~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~-~~~~v~~~ 134 (393)
T 1mdo_A 71 LMALGIGEGDEVITPSMTWVS---TLNMIVLLGANPVMVDVDRDTLMVTPEHIEAAITP-QTKAIIPV 134 (393)
T ss_dssp HHHTTCCTTCEEEEESSSCHH---HHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCT-TEEEECCB
T ss_pred HHHcCCCCCCEEEeCCCccHh---HHHHHHHCCCEEEEEeccCCcCCCCHHHHHHhcCC-CceEEEEe
Confidence 344456788877665443322 2344556677555544 22 456666666653 56666654
No 103
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*
Probab=33.67 E-value=1.5e+02 Score=25.92 Aligned_cols=91 Identities=15% Similarity=-0.027 Sum_probs=54.5
Q ss_pred CceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCC-CCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecCCCCCHHHHHH
Q 013850 42 SKLALIDADSDESLSFSQFKSIVIKVSHSFRHLGI-TKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSK 120 (435)
Q Consensus 42 ~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~-~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~ 120 (435)
.++.+-.++.+..-||++-... ..+.. +.+.|. ++|+.|.. ...+-.-..+.++|.++|..++.+-|......-..
T Consensus 26 ~~i~~K~E~~~ptGSfK~R~a~-~~i~~-a~~~g~~~~~~~vv~-~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~ 102 (316)
T 1y7l_A 26 GNVVVKIEGRNPSYSVKCRIGA-NMVWQ-AEKDGTLTKGKEIVD-ATSGNTGIALAYVAAARGYKITLTMPETMSLERKR 102 (316)
T ss_dssp TCEEEEETTSSGGGBTHHHHHH-HHHHH-HHHTTSSCTTCEEEE-SCCSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHH
T ss_pred CEEEEEeccCCCCCChHHHHHH-HHHHH-HHHcCCCCCCCEEEE-eCCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHH
Confidence 4556645544455666664332 22233 334454 56664444 44566667777888899985544444434345566
Q ss_pred HHHhcCCeEEEEccc
Q 013850 121 QVKDSNPKLVITVPE 135 (435)
Q Consensus 121 ~l~~~~~~~vi~~~~ 135 (435)
.++..++++++++..
T Consensus 103 ~~~~~GA~v~~~~~~ 117 (316)
T 1y7l_A 103 LLCGLGVNLVLTEGA 117 (316)
T ss_dssp HHHHTTCEEEEECGG
T ss_pred HHHHcCCEEEEeCCC
Confidence 788999999999864
No 104
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1
Probab=33.57 E-value=1.1e+02 Score=27.30 Aligned_cols=61 Identities=11% Similarity=0.047 Sum_probs=40.8
Q ss_pred HHHh--CCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCeEEEEc
Q 013850 70 SFRH--LGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITV 133 (435)
Q Consensus 70 ~L~~--~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~ 133 (435)
.|.+ .++++|++|+|...-.+-.+++.+|-...|+.++.+.. +.+.+ ..+++.+++.++..
T Consensus 176 al~~~~~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~--~~~~~-~~~~~lGa~~vi~~ 238 (359)
T 1h2b_A 176 AVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDV--KEEKL-KLAERLGADHVVDA 238 (359)
T ss_dssp HHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEES--SHHHH-HHHHHTTCSEEEET
T ss_pred HHHhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHH-HHHHHhCCCEEEec
Confidence 3455 68999999999998556666666665443886555443 33333 44567888887754
No 105
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=33.41 E-value=1.7e+02 Score=25.78 Aligned_cols=56 Identities=9% Similarity=0.078 Sum_probs=34.8
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecC--CC----CCHHHHHHHHHh----cCCeEEEEcc
Q 013850 76 ITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTAN--PV----YTVSELSKQVKD----SNPKLVITVP 134 (435)
Q Consensus 76 ~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~--~~----~~~~~~~~~l~~----~~~~~vi~~~ 134 (435)
+++||.|++..+..... ..++...|+.++.++ .+ .+.+.++..+++ -++++|+.+.
T Consensus 90 ~~~gd~vl~~~~~~~~~---~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~~ 155 (371)
T 2e7j_A 90 AKKDAWVVMDENCHYSS---YVAAERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITY 155 (371)
T ss_dssp CCTTCEEEEETTCCHHH---HHHHHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEES
T ss_pred hCCCCEEEEccCcchHH---HHHHHHcCCeEEEeecccCCCCCcCHHHHHHHHHhhcccCCeEEEEEEC
Confidence 46889887765544322 333667788776665 32 257788887775 3566766653
No 106
>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P 5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli} PDB: 3ss9_X* 3r0x_A* 3r0z_A
Probab=32.56 E-value=2.6e+02 Score=25.90 Aligned_cols=96 Identities=11% Similarity=-0.032 Sum_probs=59.4
Q ss_pred CceeeeecCCCc-ceeHHHHH--HHHHHHHHHH-HhCCC-CCCC----------------EEEEEcCCCCcHHHHHHHHH
Q 013850 42 SKLALIDADSDE-SLSFSQFK--SIVIKVSHSF-RHLGI-TKKD----------------VVLIFAPNSIHFPICFLGVI 100 (435)
Q Consensus 42 ~~~a~~~~~~~~-~~Ty~el~--~~~~~la~~L-~~~g~-~~gd----------------~V~l~~~~~~~~~~~~lA~~ 100 (435)
.++.+-.++.+. .=||++-- ..+.+++..+ ++.|+ .+|+ +..+....+-.-..+.++|.
T Consensus 101 ~~v~lK~E~~~p~tGSfK~Rga~~~i~~l~~~~a~~~G~l~~g~~~~~l~~~~~r~~~~~~~vv~aSsGNhg~avA~~aa 180 (442)
T 3ss7_X 101 GQLLLKKDSHLPISGSIKARGGIYEVLAHAEKLALEAGLLTLDDDYSKLLSPEFKQFFSQYSIAVGSTGNLGLSIGIMSA 180 (442)
T ss_dssp SEEEEEEGGGCTTTSBTHHHHHHHHHHHHHHHHHHHTTSCCTTSCGGGGGSHHHHHHHHTSEEEEECSSHHHHHHHHHHH
T ss_pred CeEEEeecCCCCCCCCcHHHHHHHHHHHHhHHHHHHcCCCCCCcchhhhhhhhhhhhccCcEEEEECCCHHHHHHHHHHH
Confidence 345554443233 55676632 3334444332 34564 5665 45666666777778888899
Q ss_pred HcCcEEEecCCCCCHHHHHHHHHhcCCeEEEEccccH
Q 013850 101 AIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELW 137 (435)
Q Consensus 101 ~~G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~ 137 (435)
++|..++.+-|......-...++..++++++++....
T Consensus 181 ~~G~~~~Ivmp~~~~~~k~~~~r~~GA~Vv~v~~~~~ 217 (442)
T 3ss7_X 181 RIGFKVTVHMSADARAWKKAKLRSHGVTVVEYEQDYG 217 (442)
T ss_dssp HHTCEEEEEEETTSCHHHHHHHHHTTCEEEEESSCHH
T ss_pred HhCCcEEEEECCCCCHHHHHHHHHCCCEEEEECCCHH
Confidence 9998555444444444556677899999999987543
No 107
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=32.44 E-value=1.3e+02 Score=26.64 Aligned_cols=56 Identities=14% Similarity=0.057 Sum_probs=26.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecCCC----CCHHHHHHHHHhcCCeEEEEc
Q 013850 77 TKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPV----YTVSELSKQVKDSNPKLVITV 133 (435)
Q Consensus 77 ~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~----~~~~~~~~~l~~~~~~~vi~~ 133 (435)
++||.|++..+....+.....++...|+.++.++.. .+.+.++..++. ++++|+.+
T Consensus 87 ~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~ 146 (384)
T 1eg5_A 87 KRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDE-DTFLVSIM 146 (384)
T ss_dssp TTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCT-TEEEEEEE
T ss_pred CCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCCCCccCHHHHHHHhCC-CCeEEEEE
Confidence 466766554443322222233334456655544432 245556555543 45555544
No 108
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=31.31 E-value=1.8e+02 Score=22.46 Aligned_cols=73 Identities=11% Similarity=-0.003 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHH---hcCCeEEEEccccHH
Q 013850 63 IVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVK---DSNPKLVITVPELWD 138 (435)
Q Consensus 63 ~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~l~---~~~~~~vi~~~~~~~ 138 (435)
+...+...|.+. ++.++.|+++.....-.+.-.+...|..+..++...+..+...+++ .-..+++++++....
T Consensus 18 K~~~L~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~ 93 (172)
T 1t5i_A 18 KNRKLFDLLDVL---EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGR 93 (172)
T ss_dssp HHHHHHHHHHHS---CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSCCST
T ss_pred HHHHHHHHHHhC---CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCchhc
Confidence 344455555553 3456777777654444444444556888888899888776655554 456778887765433
No 109
>3ijw_A Aminoglycoside N3-acetyltransferase; anthrax, COA, acyltransferase, structural genom center for structural genomics of infectious diseases; HET: MSE ACO; 1.90A {Bacillus anthracis} SCOP: c.140.1.0 PDB: 3slf_A* 3n0s_A* 3slb_A* 3n0m_A* 3kzl_A* 3e4f_A*
Probab=31.24 E-value=33 Score=29.48 Aligned_cols=25 Identities=24% Similarity=0.456 Sum_probs=20.8
Q ss_pred HHHHHHHHhCCCCCCCEEEEEcCCC
Q 013850 65 IKVSHSFRHLGITKKDVVLIFAPNS 89 (435)
Q Consensus 65 ~~la~~L~~~g~~~gd~V~l~~~~~ 89 (435)
..+.+.|+++||++||.|.|.+.=+
T Consensus 18 ~~l~~~L~~LGi~~Gd~llVHsSl~ 42 (268)
T 3ijw_A 18 KTITNDLRKLGLKKGMTVIVHSSLS 42 (268)
T ss_dssp HHHHHHHHHHTCCTTCEEEEEECTG
T ss_pred HHHHHHHHHcCCCCCCEEEEEechH
Confidence 4567789999999999999988753
No 110
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=30.80 E-value=1.8e+02 Score=22.50 Aligned_cols=73 Identities=15% Similarity=0.129 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHH---hcCCeEEEEccccHH
Q 013850 63 IVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVK---DSNPKLVITVPELWD 138 (435)
Q Consensus 63 ~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~l~---~~~~~~vi~~~~~~~ 138 (435)
+...+...|... ++.++.|+++.....-.+.-.+...|..+..++...+..+...+++ .-..+++++++....
T Consensus 21 K~~~L~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~ 96 (175)
T 2rb4_A 21 KYQALCNIYGSI---TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCAR 96 (175)
T ss_dssp HHHHHHHHHTTS---CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCSCCT
T ss_pred HHHHHHHHHHhC---CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecchhc
Confidence 445555555443 4567888887654444444444556888888999988876665554 446778887754433
No 111
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A*
Probab=30.52 E-value=2e+02 Score=24.82 Aligned_cols=91 Identities=13% Similarity=0.009 Sum_probs=51.6
Q ss_pred ceeeeecCCCcceeHHHHHHHHHHHHHHHHhCC-CCCCCE-EEEEcCCCCcHHHHHHHHHHcCcEEEecCCCCCHHHHHH
Q 013850 43 KLALIDADSDESLSFSQFKSIVIKVSHSFRHLG-ITKKDV-VLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSK 120 (435)
Q Consensus 43 ~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g-~~~gd~-V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~ 120 (435)
++.+-.++.+..-||++-. +..+...+.+.| +++|+. ..+....+-.-..+.++|.+.|..++.+-|......-..
T Consensus 25 ~v~~K~E~~~ptGSfK~R~--a~~~l~~a~~~g~~~~g~~~~vv~assGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~ 102 (304)
T 1ve1_A 25 EVWVKLEGLNPGGSIKDRP--AWYMIKDAEERGILRPGSGQVIVEPTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKR 102 (304)
T ss_dssp EEEEEEGGGSTTSBTTHHH--HHHHHHHHHHTTSCCTTSCCEEEESCCSHHHHHHHHHHHHHTCEEEEEEETTCCHHHHH
T ss_pred EEEEEecccCCCCcHHHHH--HHHHHHHHHHcCCCCCCCccEEEEeCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHH
Confidence 4455343333445565522 222222333445 466662 333345555666677778899986555444433445566
Q ss_pred HHHhcCCeEEEEccc
Q 013850 121 QVKDSNPKLVITVPE 135 (435)
Q Consensus 121 ~l~~~~~~~vi~~~~ 135 (435)
.++..++++++++..
T Consensus 103 ~~~~~Ga~V~~~~~~ 117 (304)
T 1ve1_A 103 VLKAFGAELVLTDPE 117 (304)
T ss_dssp HHHHTTCEEEEECTT
T ss_pred HHHHcCCEEEEECCC
Confidence 788999999999864
No 112
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=30.00 E-value=1.5e+02 Score=26.21 Aligned_cols=74 Identities=12% Similarity=0.042 Sum_probs=45.7
Q ss_pred ceeHHHHHHHHHH--H-HHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCeEE
Q 013850 54 SLSFSQFKSIVIK--V-SHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV 130 (435)
Q Consensus 54 ~~Ty~el~~~~~~--l-a~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v 130 (435)
.+++.+....... . -+.|.+.++++|++|+|...-.+-.+++.+|- ..|+.++.+..+-. .+ ..+++.+++.+
T Consensus 149 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~Vi~~~~~~~--~~-~~~~~lGa~~v 224 (348)
T 3two_A 149 NAPLEKVAPLLCAGITTYSPLKFSKVTKGTKVGVAGFGGLGSMAVKYAV-AMGAEVSVFARNEH--KK-QDALSMGVKHF 224 (348)
T ss_dssp TSCHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEESCSHHHHHHHHHHH-HTTCEEEEECSSST--TH-HHHHHTTCSEE
T ss_pred CCCHHHhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCcHHHHHHHHHHH-HCCCeEEEEeCCHH--HH-HHHHhcCCCee
Confidence 5677665422211 1 23455668999999999986445566555554 56887666554322 22 35567888888
Q ss_pred E
Q 013850 131 I 131 (435)
Q Consensus 131 i 131 (435)
+
T Consensus 225 ~ 225 (348)
T 3two_A 225 Y 225 (348)
T ss_dssp E
T ss_pred c
Confidence 7
No 113
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*
Probab=29.79 E-value=1.2e+02 Score=26.75 Aligned_cols=77 Identities=4% Similarity=-0.057 Sum_probs=47.4
Q ss_pred eeHHHHHHHHHHH---HHHHHhC--CCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCeE
Q 013850 55 LSFSQFKSIVIKV---SHSFRHL--GITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKL 129 (435)
Q Consensus 55 ~Ty~el~~~~~~l---a~~L~~~--g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~ 129 (435)
+++.+........ -+.|.+. ++++|++|+|...-.+-.+++.+|-..-|+.++.+.. +.+. ...+++.+++.
T Consensus 143 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~--~~~~-~~~~~~lGa~~ 219 (345)
T 3jv7_A 143 LDPVAAAPLTDAGLTPYHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDL--DDDR-LALAREVGADA 219 (345)
T ss_dssp CCHHHHGGGGTTTHHHHHHHHTTGGGCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEES--CHHH-HHHHHHTTCSE
T ss_pred CCHHHhhhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC--CHHH-HHHHHHcCCCE
Confidence 6776654332221 2334443 7899999999987556666666666554666655533 3333 34567888888
Q ss_pred EEEcc
Q 013850 130 VITVP 134 (435)
Q Consensus 130 vi~~~ 134 (435)
++...
T Consensus 220 ~i~~~ 224 (345)
T 3jv7_A 220 AVKSG 224 (345)
T ss_dssp EEECS
T ss_pred EEcCC
Confidence 77643
No 114
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=29.59 E-value=1.7e+02 Score=23.00 Aligned_cols=76 Identities=8% Similarity=0.012 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecCCCCCHHHHH---HHHHhcCCeEEEEccccHHH
Q 013850 63 IVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELS---KQVKDSNPKLVITVPELWDK 139 (435)
Q Consensus 63 ~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~---~~l~~~~~~~vi~~~~~~~~ 139 (435)
+...+...|.+.+ ++.++.|+++.....-.+.-.+-..|..+..++...+..+.. ..++.-+.+++++++.....
T Consensus 32 K~~~L~~ll~~~~--~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~G 109 (185)
T 2jgn_A 32 KRSFLLDLLNATG--KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARG 109 (185)
T ss_dssp HHHHHHHHHHHC---CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTSSSEEEEEC-----
T ss_pred HHHHHHHHHHhcC--CCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcChhhcC
Confidence 4445556666543 566788888765444433444445688888888877654433 34455677888887655444
Q ss_pred H
Q 013850 140 V 140 (435)
Q Consensus 140 ~ 140 (435)
+
T Consensus 110 l 110 (185)
T 2jgn_A 110 L 110 (185)
T ss_dssp -
T ss_pred C
Confidence 4
No 115
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=29.45 E-value=94 Score=26.57 Aligned_cols=40 Identities=13% Similarity=0.381 Sum_probs=31.3
Q ss_pred HHHHHHHHhCCCCCCCEEEEEcCCCCc-HHHHHHHHHHcCc
Q 013850 65 IKVSHSFRHLGITKKDVVLIFAPNSIH-FPICFLGVIAIGA 104 (435)
Q Consensus 65 ~~la~~L~~~g~~~gd~V~l~~~~~~~-~~~~~lA~~~~G~ 104 (435)
..++..|.++|+.+++.|.++|..+.. ...+...+..+|.
T Consensus 72 ~~~~~~~~~~gi~~~~~ivvyc~~g~~~a~~a~~~L~~~G~ 112 (280)
T 1urh_A 72 ETFAVAMRELGVNQDKHLIVYDEGNLFSAPRAWWMLRTFGV 112 (280)
T ss_dssp HHHHHHHHHTTCCTTSEEEEECSSSCSSHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCCCCeEEEECCCCCccHHHHHHHHHHcCC
Confidence 566777778899999999999988765 6666667777786
No 116
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=29.38 E-value=1.7e+02 Score=25.87 Aligned_cols=58 Identities=16% Similarity=0.112 Sum_probs=33.5
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecCCC----CCHHHHHHHHHhcCCeEEEEcc
Q 013850 76 ITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPV----YTVSELSKQVKDSNPKLVITVP 134 (435)
Q Consensus 76 ~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~----~~~~~~~~~l~~~~~~~vi~~~ 134 (435)
+++||.|++..+. .......-.+...|+.++.++.. .+.+.++..++..++++|+.+.
T Consensus 74 ~~~gd~vi~~~~~-~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~ 135 (384)
T 3zrp_A 74 LKPNDKILVVSNG-VFGDRWEQIFKRYPVNVKVLRPSPGDYVKPGEVEEEVRKSEYKLVALTH 135 (384)
T ss_dssp CCTTCEEEEECSS-HHHHHHHHHHTTSSCEEEEECCSTTCCCCHHHHHHHHHHSCEEEEEEES
T ss_pred cCCCCEEEEecCC-cchHHHHHHHHHcCCcEEEecCCCCCCCCHHHHHHHHHhCCCcEEEEeC
Confidence 5788877766542 21111222234567665555433 3678888888776677777654
No 117
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=29.24 E-value=2.1e+02 Score=25.51 Aligned_cols=55 Identities=18% Similarity=0.248 Sum_probs=33.8
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecCCC-----CCHHHHHHHHHhcCCeEEEEc
Q 013850 75 GITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPV-----YTVSELSKQVKDSNPKLVITV 133 (435)
Q Consensus 75 g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~-----~~~~~~~~~l~~~~~~~vi~~ 133 (435)
++++||.|.+..+.. .....++...|+.++.++.+ .+.+.++..++. ++++|+..
T Consensus 76 ~~~~g~~Vi~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~ 135 (390)
T 3b8x_A 76 RLKKGDEIIVPAVSW---STTYYPLQQYGLRVKFVDIDINTLNIDIESLKEAVTD-STKAILTV 135 (390)
T ss_dssp SCCTTCEEEEESSSC---HHHHHHHHHTTCEEEEECBCTTTCSBCHHHHHHHCCT-TEEEEEEE
T ss_pred CCCCcCEEEECCCCc---HHHHHHHHHcCCEEEEEecCccccCcCHHHHHHHhCc-CCeEEEEE
Confidence 678899887765543 33344566778766554432 256777777654 56666664
No 118
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A*
Probab=29.15 E-value=2.1e+02 Score=24.81 Aligned_cols=89 Identities=10% Similarity=-0.005 Sum_probs=52.9
Q ss_pred ceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCC-CCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecCCCCCHHHHHHH
Q 013850 43 KLALIDADSDESLSFSQFKSIVIKVSHSFRHLGI-TKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQ 121 (435)
Q Consensus 43 ~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~-~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~ 121 (435)
++.+-.++.+..-||++-.. ..+...+.+.|. ++|+.|.... .+-.-..+.++|.+.|..++.+-|......-...
T Consensus 26 ~v~~K~E~~~ptGSfK~R~a--~~~i~~a~~~g~~~~g~~vv~~s-sGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~ 102 (303)
T 2v03_A 26 EVWLKLEGNNPAGSVKDRAA--LSMIVEAEKRGEIKPGDVLIEAT-SGNTGIALAMIAALKGYRMKLLMPDNMSQERRAA 102 (303)
T ss_dssp EEEEEEGGGSTTSBTHHHHH--HHHHHHHHHTTCCCTTCEEEEEC-SSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHH
T ss_pred EEEEEeccCCCCCCcHHHHH--HHHHHHHHHcCCCCCCCEEEEEC-CcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHH
Confidence 45544443334556665322 222223333453 6676655554 4556667777788999866555554444455667
Q ss_pred HHhcCCeEEEEcc
Q 013850 122 VKDSNPKLVITVP 134 (435)
Q Consensus 122 l~~~~~~~vi~~~ 134 (435)
++..++++++++.
T Consensus 103 ~~~~Ga~v~~~~~ 115 (303)
T 2v03_A 103 MRAYGAELILVTK 115 (303)
T ss_dssp HHHTTCEEEEECT
T ss_pred HHHcCCEEEEECC
Confidence 8899999999985
No 119
>3sma_A FRBF; N-acetyl transferase, acetyl COA binding, transferase; HET: ACO; 2.00A {Streptomyces rubellomurinus}
Probab=28.97 E-value=38 Score=29.37 Aligned_cols=31 Identities=23% Similarity=0.358 Sum_probs=24.0
Q ss_pred CcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCC
Q 013850 52 DESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNS 89 (435)
Q Consensus 52 ~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~ 89 (435)
+..+|..+ +.+.|+++||++||.|.|.+.=+
T Consensus 19 ~~~~T~~~-------L~~~L~~LGI~~Gd~llVHsSL~ 49 (286)
T 3sma_A 19 RELVTRDR-------LASDLAALGVRPGGVLLVHASLS 49 (286)
T ss_dssp CCEECHHH-------HHHHHHHHTCCTTCEEEEEECST
T ss_pred CCCcCHHH-------HHHHHHHcCCCCCCEEEEEechH
Confidence 35677665 45678889999999999988754
No 120
>2nyg_A YOKD protein; PFAM02522, NYSGXRC, aminoglycoside 3-N- acetyltransferase, PSI-2, structural genomics, protein structure initiative; HET: COA; 2.60A {Bacillus subtilis} SCOP: c.140.1.2
Probab=28.86 E-value=38 Score=29.22 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=19.8
Q ss_pred HHHHHHHhCCCCCCCEEEEEcCCC
Q 013850 66 KVSHSFRHLGITKKDVVLIFAPNS 89 (435)
Q Consensus 66 ~la~~L~~~g~~~gd~V~l~~~~~ 89 (435)
.+.+.|+++||++||.|.|.+.=+
T Consensus 17 ~L~~~L~~LGI~~Gd~llVHsSl~ 40 (273)
T 2nyg_A 17 SITEDLKALGLKKGMTVLVHSSLS 40 (273)
T ss_dssp HHHHHHHHHTCCTTCEEEEEECSG
T ss_pred HHHHHHHHcCCCCCCEEEEEechH
Confidence 466788899999999999987643
No 121
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=28.76 E-value=1.4e+02 Score=26.93 Aligned_cols=13 Identities=15% Similarity=0.391 Sum_probs=7.6
Q ss_pred cceeeccHHHHHH
Q 013850 208 KGVILTHKNFIAA 220 (435)
Q Consensus 208 K~v~~t~~~l~~~ 220 (435)
-|+.+....+...
T Consensus 238 ~G~~~~~~~~~~~ 250 (420)
T 1t3i_A 238 IGFLYGKEEILEA 250 (420)
T ss_dssp CEEEEECHHHHHH
T ss_pred eEEEEEchHHHhh
Confidence 4666666665544
No 122
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=28.59 E-value=1.2e+02 Score=27.36 Aligned_cols=55 Identities=13% Similarity=0.036 Sum_probs=38.7
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCeEEEEcc
Q 013850 76 ITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVP 134 (435)
Q Consensus 76 ~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~ 134 (435)
+++||.|.+-.+. +....-++...|+.+++++. .+.+.++..++..++++|+++.
T Consensus 140 ~~~gd~Vl~~~~~---~~~~~~~~~~~g~~~~~~~~-~d~~~le~~l~~~~~~~vi~~~ 194 (409)
T 3kki_A 140 CQPNTNVYIDFFA---HMSLWEGARYANAQAHPFMH-NNCDHLRMLIQRHGPGIIVVDS 194 (409)
T ss_dssp CCTTCEEEEETTS---CHHHHHHHHHTTCEEEEECT-TCHHHHHHHHHHHCSCEEEEES
T ss_pred cCCCCEEEECCCc---CHHHHHHHHHcCCeEEEecC-CCHHHHHHHHHhcCCeEEEECC
Confidence 4789988765443 33445566677888887754 4678888888877678888774
No 123
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=28.52 E-value=50 Score=25.13 Aligned_cols=40 Identities=5% Similarity=-0.093 Sum_probs=25.0
Q ss_pred HHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCc
Q 013850 65 IKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGA 104 (435)
Q Consensus 65 ~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~ 104 (435)
.++...|.+.|+.++..|.++|..+.....+...+..+|.
T Consensus 66 ~~l~~~l~~~~~~~~~~ivvyC~~G~rS~~aa~~L~~~G~ 105 (148)
T 2fsx_A 66 AELRDRIPADADQHERPVIFLCRSGNRSIGAAEVATEAGI 105 (148)
T ss_dssp HHHHHHCC-------CCEEEECSSSSTHHHHHHHHHHTTC
T ss_pred HHHHHHHhhccCCCCCEEEEEcCCChhHHHHHHHHHHcCC
Confidence 3444445455778888899999988888777888888886
No 124
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=28.43 E-value=1.8e+02 Score=26.53 Aligned_cols=30 Identities=10% Similarity=0.069 Sum_probs=14.6
Q ss_pred HcCcEEEecCCCCCHHHHHHHHHhcCCeEEEE
Q 013850 101 AIGAIASTANPVYTVSELSKQVKDSNPKLVIT 132 (435)
Q Consensus 101 ~~G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~ 132 (435)
+.|+.++.++.. +.+.++..++. ++++|++
T Consensus 143 ~~g~~~~~v~~~-d~~~l~~ai~~-~t~~v~l 172 (414)
T 3ndn_A 143 RWGVQTVFVDGD-DLSQWERALSV-PTQAVFF 172 (414)
T ss_dssp HTTCEEEEECTT-CHHHHHHHTSS-CCSEEEE
T ss_pred HcCcEEEEeCCC-CHHHHHHhcCC-CCeEEEE
Confidence 355555555443 44555554443 4455554
No 125
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=28.02 E-value=1.3e+02 Score=26.68 Aligned_cols=13 Identities=8% Similarity=-0.118 Sum_probs=8.1
Q ss_pred cceeeccHHHHHH
Q 013850 208 KGVILTHKNFIAA 220 (435)
Q Consensus 208 K~v~~t~~~l~~~ 220 (435)
-|+.+....+...
T Consensus 218 ~g~~~~~~~~~~~ 230 (393)
T 3kgw_A 218 ISLISFNDKAKYK 230 (393)
T ss_dssp CEEEEECHHHHHH
T ss_pred eeEEEECHHHHHH
Confidence 4666666666554
No 126
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=27.94 E-value=1.5e+02 Score=26.60 Aligned_cols=13 Identities=8% Similarity=-0.000 Sum_probs=7.6
Q ss_pred cceeeccHHHHHH
Q 013850 208 KGVILTHKNFIAA 220 (435)
Q Consensus 208 K~v~~t~~~l~~~ 220 (435)
-|+.+....+...
T Consensus 206 ~g~~~~~~~~~~~ 218 (416)
T 3isl_A 206 MAPITYNERVADV 218 (416)
T ss_dssp EEEEEECHHHHHH
T ss_pred eEEEEECHHHHHH
Confidence 3566666666554
No 127
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=27.64 E-value=2.1e+02 Score=25.30 Aligned_cols=56 Identities=11% Similarity=0.132 Sum_probs=30.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecCC-C----CCHHHHHHHHHhcCCeEEEEc
Q 013850 77 TKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANP-V----YTVSELSKQVKDSNPKLVITV 133 (435)
Q Consensus 77 ~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~-~----~~~~~~~~~l~~~~~~~vi~~ 133 (435)
++||.|++..+....... .-++...|+.++.++. . .+.+.++..++..++++|+.+
T Consensus 84 ~~gd~vlv~~~~~~~~~~-~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~v~~~ 144 (385)
T 2bkw_A 84 APNKNVLVVSTGTFSDRF-ADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQNSYGAVTVT 144 (385)
T ss_dssp CSCCEEEEECSSHHHHHH-HHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHHSCCSEEEEE
T ss_pred CCCCeEEEEcCCcchHHH-HHHHHHcCCceEEEecCCCCCCCCHHHHHHHHhcCCCCEEEEE
Confidence 678877665333322221 2344556766555543 2 356777777765456666654
No 128
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Probab=27.37 E-value=1e+02 Score=27.33 Aligned_cols=77 Identities=10% Similarity=0.016 Sum_probs=46.3
Q ss_pred cceeHHHHHHHHHH--HH-HHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCc-EEEecCCCCCHHHHHHHHHhcCCe
Q 013850 53 ESLSFSQFKSIVIK--VS-HSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGA-IASTANPVYTVSELSKQVKDSNPK 128 (435)
Q Consensus 53 ~~~Ty~el~~~~~~--la-~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~-~~v~i~~~~~~~~~~~~l~~~~~~ 128 (435)
..+++.+..-.... .| +.|+..++++|++|+|...-.+-.+++.+| ...|+ .++.+..+ .+ -..++++.+++
T Consensus 138 ~~~~~~~aa~~~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~a~qla-~~~Ga~~Vi~~~~~--~~-~~~~~~~lGa~ 213 (352)
T 3fpc_A 138 KEIPLEAAVMIPDMMTTGFHGAELANIKLGDTVCVIGIGPVGLMSVAGA-NHLGAGRIFAVGSR--KH-CCDIALEYGAT 213 (352)
T ss_dssp TTSCHHHHTTTTTHHHHHHHHHHHTTCCTTCCEEEECCSHHHHHHHHHH-HTTTCSSEEEECCC--HH-HHHHHHHHTCC
T ss_pred CCCCHHHHhhccchhHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHH-HHcCCcEEEEECCC--HH-HHHHHHHhCCc
Confidence 35666665322111 11 335667899999999998644555555555 45787 45555432 33 33566778888
Q ss_pred EEEEc
Q 013850 129 LVITV 133 (435)
Q Consensus 129 ~vi~~ 133 (435)
.++..
T Consensus 214 ~vi~~ 218 (352)
T 3fpc_A 214 DIINY 218 (352)
T ss_dssp EEECG
T ss_pred eEEcC
Confidence 77753
No 129
>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J protein structure initiative, joint center for structural G transferase; 1.80A {Thermotoga maritima} SCOP: c.79.1.1 PDB: 3fca_A*
Probab=27.01 E-value=2e+02 Score=24.87 Aligned_cols=88 Identities=14% Similarity=0.007 Sum_probs=48.5
Q ss_pred ceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCC-CCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecCCCCCHHHHHHH
Q 013850 43 KLALIDADSDESLSFSQFKSIVIKVSHSFRHLGI-TKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQ 121 (435)
Q Consensus 43 ~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~-~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~ 121 (435)
++.+-.++.+..-||++.... .+...+.+.|. +++ . +....+-.-..+.++|.++|..++.+-|......-...
T Consensus 32 ~v~~K~E~~~ptGSfK~R~a~--~~l~~a~~~g~~~~~-v--v~aSsGN~g~a~A~aa~~~G~~~~iv~p~~~~~~k~~~ 106 (303)
T 1o58_A 32 RIFLKLEKNNPGGSVKDRPAL--FMILDAEKRGLLKNG-I--VEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKV 106 (303)
T ss_dssp TEEEEEGGGSTTSBTTHHHHH--HHHHHHHHTTCCTTC-E--EEECSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHH
T ss_pred eEEEEecCCCCCCChHHHHHH--HHHHHHHHcCCCCCC-E--EEECchHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHH
Confidence 455534333344556543222 22223333453 344 2 34444555566677788899755444444333455567
Q ss_pred HHhcCCeEEEEccc
Q 013850 122 VKDSNPKLVITVPE 135 (435)
Q Consensus 122 l~~~~~~~vi~~~~ 135 (435)
++..++++++++..
T Consensus 107 ~~~~GA~V~~~~~~ 120 (303)
T 1o58_A 107 LKMLGAELVLTPGE 120 (303)
T ss_dssp HHHTTCEEEEECGG
T ss_pred HHHcCCEEEEECCC
Confidence 88999999999864
No 130
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=26.97 E-value=1.7e+02 Score=25.77 Aligned_cols=55 Identities=9% Similarity=0.122 Sum_probs=36.1
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEe--cCC--CCCHHHHHHHHHhcCCeEEEEc
Q 013850 76 ITKKDVVLIFAPNSIHFPICFLGVIAIGAIAST--ANP--VYTVSELSKQVKDSNPKLVITV 133 (435)
Q Consensus 76 ~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~--i~~--~~~~~~~~~~l~~~~~~~vi~~ 133 (435)
+++||.|++..+.-..+. .++...|+.++. +++ ..+.+.++..++..++++|++.
T Consensus 106 ~~~gd~Vl~~~~~~~~~~---~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~ 164 (367)
T 3euc_A 106 ARPGAKVMAPVPGFVMYA---MSAQFAGLEFVGVPLRADFTLDRGAMLAAMAEHQPAIVYLA 164 (367)
T ss_dssp CCTTCEEEEEESCSCCSC---HHHHTTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEE
T ss_pred cCCCCEEEEcCCCHHHHH---HHHHHcCCeEEEecCCCCCCCCHHHHHHHhhccCCCEEEEc
Confidence 578998887766554433 234566775554 443 3467888888887678887764
No 131
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=26.37 E-value=2e+02 Score=28.78 Aligned_cols=56 Identities=18% Similarity=0.122 Sum_probs=38.0
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecCCCC--------------CHHHHHHHHHhc-CCe----EEEEcc
Q 013850 76 ITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVY--------------TVSELSKQVKDS-NPK----LVITVP 134 (435)
Q Consensus 76 ~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~--------------~~~~~~~~l~~~-~~~----~vi~~~ 134 (435)
+++||.|.+--++. ....-++..+|+.++.+++.. +.+.++..++.. +.+ ++++++
T Consensus 232 ~~pGD~VLv~r~~H---~S~~~~l~lsGa~pv~v~~~~~~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p 306 (715)
T 3n75_A 232 APAGSTILIDRNCH---KSLTHLMMMSDVTPIYFRPTRNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS 306 (715)
T ss_dssp CCTTCEEEEESSCC---HHHHHHHHHSCCEEEEECCCBCTTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS
T ss_pred CCCCCEEEECCCcc---HHHHHHHHHcCCEEEEEeccccccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC
Confidence 68999887765554 333457888999988887641 477888888763 333 566654
No 132
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=26.36 E-value=1.3e+02 Score=26.75 Aligned_cols=10 Identities=20% Similarity=0.488 Sum_probs=5.3
Q ss_pred ceeeccHHHH
Q 013850 209 GVILTHKNFI 218 (435)
Q Consensus 209 ~v~~t~~~l~ 218 (435)
|+.+..+.+.
T Consensus 229 G~~~~~~~~~ 238 (390)
T 1elu_A 229 GGLYIHGDCL 238 (390)
T ss_dssp EEEEECTTTG
T ss_pred EEEEECHHhH
Confidence 5565555443
No 133
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*
Probab=26.36 E-value=1.1e+02 Score=27.84 Aligned_cols=59 Identities=20% Similarity=0.266 Sum_probs=30.3
Q ss_pred HHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecCCC-----CCHHHHHHHHHhcCCeEEEEc
Q 013850 71 FRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPV-----YTVSELSKQVKDSNPKLVITV 133 (435)
Q Consensus 71 L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~-----~~~~~~~~~l~~~~~~~vi~~ 133 (435)
++..++++||.|++..+..... ..++...|+.++.++.+ .+.+.++..++. ++++|+..
T Consensus 74 ~~~~~~~~gd~Vl~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~ 137 (418)
T 2c81_A 74 LEALGIGEGDEVIVPSLTWIAT---ATAVLNVNALPVFVDVEADTYCIDPQLIKSAITD-KTKAIIPV 137 (418)
T ss_dssp HHHTTCCTTCEEEEESSSCTHH---HHHHHHTTCEEEEECBCTTTCSBCHHHHGGGCCT-TEEEECCB
T ss_pred HHHcCCCCcCEEEECCCccHhH---HHHHHHcCCEEEEEecCCCCCCcCHHHHHHhhCC-CCeEEEEe
Confidence 3444567788776665543332 23445667655554432 244555544432 45555543
No 134
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Probab=26.19 E-value=1.9e+02 Score=25.93 Aligned_cols=59 Identities=14% Similarity=0.149 Sum_probs=38.3
Q ss_pred HHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCc-EEEecCCCCCHHHHHHHHHhcCCeEEEE
Q 013850 70 SFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGA-IASTANPVYTVSELSKQVKDSNPKLVIT 132 (435)
Q Consensus 70 ~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~-~~v~i~~~~~~~~~~~~l~~~~~~~vi~ 132 (435)
.|...++++|++|+|...-.+-.+++.+|- ..|+ .++.+..+ .+. ..++++.+++.++.
T Consensus 174 ~l~~~~~~~g~~VlV~GaG~vG~~aiqlak-~~Ga~~Vi~~~~~--~~~-~~~a~~lGa~~vi~ 233 (370)
T 4ej6_A 174 GVDLSGIKAGSTVAILGGGVIGLLTVQLAR-LAGATTVILSTRQ--ATK-RRLAEEVGATATVD 233 (370)
T ss_dssp HHHHHTCCTTCEEEEECCSHHHHHHHHHHH-HTTCSEEEEECSC--HHH-HHHHHHHTCSEEEC
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCCEEEEECCC--HHH-HHHHHHcCCCEEEC
Confidence 345568999999999987445555555544 5788 56555433 333 34667788887764
No 135
>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A
Probab=26.12 E-value=2.2e+02 Score=24.96 Aligned_cols=58 Identities=16% Similarity=0.198 Sum_probs=38.3
Q ss_pred HHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCeEEE
Q 013850 70 SFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI 131 (435)
Q Consensus 70 ~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~vi 131 (435)
.|.+.++++|++|+|...-++-..++.+|- ..|+.++.+.. +.+.++ .+++.+++.++
T Consensus 156 ~l~~~~~~~g~~VlV~GaG~vG~~~~~~a~-~~Ga~Vi~~~~--~~~~~~-~~~~lGa~~~~ 213 (339)
T 1rjw_A 156 ALKVTGAKPGEWVAIYGIGGLGHVAVQYAK-AMGLNVVAVDI--GDEKLE-LAKELGADLVV 213 (339)
T ss_dssp HHHHHTCCTTCEEEEECCSTTHHHHHHHHH-HTTCEEEEECS--CHHHHH-HHHHTTCSEEE
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCEEEEEeC--CHHHHH-HHHHCCCCEEe
Confidence 344558999999999998666666666654 56886665543 344443 44567777655
No 136
>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A
Probab=25.93 E-value=1.5e+02 Score=26.43 Aligned_cols=79 Identities=15% Similarity=0.103 Sum_probs=47.0
Q ss_pred ceeHHHHHHHH--HHHH-HHHHh-CCCCCC-CEEEEEcCC-CCcHHHHHHHHHHcCcEEEecC-CCCCHHHHHHHHHhcC
Q 013850 54 SLSFSQFKSIV--IKVS-HSFRH-LGITKK-DVVLIFAPN-SIHFPICFLGVIAIGAIASTAN-PVYTVSELSKQVKDSN 126 (435)
Q Consensus 54 ~~Ty~el~~~~--~~la-~~L~~-~g~~~g-d~V~l~~~~-~~~~~~~~lA~~~~G~~~v~i~-~~~~~~~~~~~l~~~~ 126 (435)
.+++.+..... -..| +.|.+ .++++| ++|+|.... .+-.+++.+|- ..|+..+.+. .....++....+++.+
T Consensus 138 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~~VlV~Ga~G~vG~~aiqlak-~~Ga~vi~~~~~~~~~~~~~~~~~~lG 216 (364)
T 1gu7_A 138 GLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGK-LLNFNSISVIRDRPNLDEVVASLKELG 216 (364)
T ss_dssp CCCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHH-HHTCEEEEEECCCTTHHHHHHHHHHHT
T ss_pred CCCHHHHhhccccHHHHHHHHHHhhccCCCCcEEEECCCCcHHHHHHHHHHH-HCCCEEEEEecCccccHHHHHHHHhcC
Confidence 47777644322 1223 23444 389999 999999874 46666666655 4688655443 2222233344557888
Q ss_pred CeEEEEc
Q 013850 127 PKLVITV 133 (435)
Q Consensus 127 ~~~vi~~ 133 (435)
++.++..
T Consensus 217 a~~vi~~ 223 (364)
T 1gu7_A 217 ATQVITE 223 (364)
T ss_dssp CSEEEEH
T ss_pred CeEEEec
Confidence 8888754
No 137
>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}
Probab=25.78 E-value=1.3e+02 Score=22.81 Aligned_cols=48 Identities=19% Similarity=0.018 Sum_probs=21.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCe
Q 013850 80 DVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPK 128 (435)
Q Consensus 80 d~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~ 128 (435)
|.|.++.| .....-++..|..+|.-.+.+.+....+++....++.+.+
T Consensus 72 Dlvii~vp-~~~v~~v~~~~~~~g~~~i~i~~~~~~~~l~~~a~~~Gi~ 119 (145)
T 2duw_A 72 DMVDVFRN-SEAAWGVAQEAIAIGAKTLWLQLGVINEQAAVLAREAGLS 119 (145)
T ss_dssp SEEECCSC-STHHHHHHHHHHHHTCCEEECCTTCCCHHHHHHHHTTTCE
T ss_pred CEEEEEeC-HHHHHHHHHHHHHcCCCEEEEcCChHHHHHHHHHHHcCCE
Confidence 44444444 2333333334445554444444444445555555554444
No 138
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=25.77 E-value=1.7e+02 Score=26.22 Aligned_cols=53 Identities=21% Similarity=0.236 Sum_probs=28.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecCCC-------CCHHHHHHHHHhcCCeEEEE
Q 013850 77 TKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPV-------YTVSELSKQVKDSNPKLVIT 132 (435)
Q Consensus 77 ~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~-------~~~~~~~~~l~~~~~~~vi~ 132 (435)
++||.|++..+.-.. ...++...|+.++.++.. .+.+.++..++..++++|+.
T Consensus 111 ~~gd~vl~~~p~~~~---~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~ 170 (399)
T 1c7n_A 111 KPGDGVIIITPVYYP---FFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLF 170 (399)
T ss_dssp CTTCEEEECSSCCTH---HHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEE
T ss_pred CCCCEEEEcCCCcHh---HHHHHHHcCCEEEecccccCCCCEEEcHHHHHHHhccCCCcEEEE
Confidence 567766664443222 223344567666655432 45666766665445666664
No 139
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=25.64 E-value=1e+02 Score=26.13 Aligned_cols=40 Identities=18% Similarity=0.270 Sum_probs=33.4
Q ss_pred HHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcE
Q 013850 66 KVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI 105 (435)
Q Consensus 66 ~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~ 105 (435)
.+...+.+.++.+++.|.++|..+.....+...+..+|..
T Consensus 210 ~l~~~~~~~~~~~~~~ivvyC~~G~rs~~a~~~L~~~G~~ 249 (271)
T 1e0c_A 210 DIAGRLEELGITPDKEIVTHCQTHHRSGLTYLIAKALGYP 249 (271)
T ss_dssp THHHHHHHTTCCTTSEEEEECSSSSHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHcCCCCCCCEEEECCchHHHHHHHHHHHHcCCC
Confidence 4555566778999999999999999888888888899973
No 140
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=25.42 E-value=1.6e+02 Score=27.17 Aligned_cols=59 Identities=12% Similarity=0.095 Sum_probs=37.7
Q ss_pred CCCCCEEEEEcCCCCcHHHHHH---------HHHHcCcEEEecCCC----CCHHHHHHHHHh-cCCeEEEEcc
Q 013850 76 ITKKDVVLIFAPNSIHFPICFL---------GVIAIGAIASTANPV----YTVSELSKQVKD-SNPKLVITVP 134 (435)
Q Consensus 76 ~~~gd~V~l~~~~~~~~~~~~l---------A~~~~G~~~v~i~~~----~~~~~~~~~l~~-~~~~~vi~~~ 134 (435)
+++||.|.+.....+.....++ .+...|+.+..++.. .+.+.++..+++ .++++|+++.
T Consensus 112 l~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~g~~D~e~l~~~l~~~~~tklV~i~~ 184 (427)
T 3i16_A 112 LRPGNTMLSVCGEPYDTLHDVIGITENSNMGSLKEFGINYKQVDLKEDGKPNLEEIEKVLKEDESITLVHIQR 184 (427)
T ss_dssp CCTTCEEEESSSSCCGGGHHHHTCSCCCSSCCTGGGTCEEEECCCCTTSSCCHHHHHHHHHTCTTEEEEEEEC
T ss_pred hCCCCEEEEeCCCccHHHHHHHhccccchHHHHHHcCCEEEEecCccCCCcCHHHHHHHhhCCCCCEEEEEEc
Confidence 5789987766523443333232 244568877777653 567888888774 5788888776
No 141
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=25.18 E-value=1.9e+02 Score=25.70 Aligned_cols=54 Identities=9% Similarity=0.092 Sum_probs=30.9
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecCC--C-----CCHHHHHHHHHhcCCeEEEE
Q 013850 76 ITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANP--V-----YTVSELSKQVKDSNPKLVIT 132 (435)
Q Consensus 76 ~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~--~-----~~~~~~~~~l~~~~~~~vi~ 132 (435)
.++||.|++..+.-.. ...++...|+.++.++. . .+.+.++..++..++++|+.
T Consensus 108 ~~~gd~vl~~~p~y~~---~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~l 168 (390)
T 1d2f_A 108 SETGEGVVIHTPAYDA---FYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLL 168 (390)
T ss_dssp SCTTCEEEEEESCCHH---HHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEE
T ss_pred cCCCCEEEEcCCCcHH---HHHHHHHCCCEEEEeecccCCCccccCHHHHHHHhccCCCeEEEE
Confidence 3577877766553322 23344556765554432 2 46677777776556676664
No 142
>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens}
Probab=24.98 E-value=2.8e+02 Score=24.11 Aligned_cols=88 Identities=11% Similarity=-0.016 Sum_probs=50.2
Q ss_pred ceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecCCCCCHHHHHHHH
Q 013850 43 KLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQV 122 (435)
Q Consensus 43 ~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~l 122 (435)
++.+-.++.+..-||++-... ..+...+ +.| ++.| +....+-.-..+.++|.+.|..++.+-|..........+
T Consensus 23 ~v~~K~E~~~ptgS~K~R~a~-~~l~~a~-~~g---~~~v-v~~ssGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~ 96 (318)
T 2rkb_A 23 PVFLKCENVQPSGSFKIRGIG-HFCQEMA-KKG---CRHL-VCSSGGNAGIAAAYAARKLGIPATIVLPESTSLQVVQRL 96 (318)
T ss_dssp CEEEEEGGGSTTSBTTHHHHH-HHHHHHH-HTT---CCEE-EECCCSHHHHHHHHHHHHHTCCEEEEECTTCCHHHHHHH
T ss_pred eEEEEecCCCCCCCHHHHHHH-HHHHHHH-HcC---CCEE-EEECCchHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHH
Confidence 455544433444566553322 1222222 323 3444 444446666677788889998555544444444556678
Q ss_pred HhcCCeEEEEcccc
Q 013850 123 KDSNPKLVITVPEL 136 (435)
Q Consensus 123 ~~~~~~~vi~~~~~ 136 (435)
+..++++++++...
T Consensus 97 ~~~Ga~V~~~~~~~ 110 (318)
T 2rkb_A 97 QGEGAEVQLTGKVW 110 (318)
T ss_dssp HHTTCEEEECCSSH
T ss_pred HhcCCEEEEECCCH
Confidence 89999999988643
No 143
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=24.96 E-value=1.9e+02 Score=25.46 Aligned_cols=51 Identities=27% Similarity=0.320 Sum_probs=27.5
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCeEEEE
Q 013850 76 ITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVIT 132 (435)
Q Consensus 76 ~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~ 132 (435)
+++||.|++..+.-..+ ..++...|+.++.++ .+.+.++..++. ++++|+.
T Consensus 110 ~~~gd~vl~~~p~~~~~---~~~~~~~g~~~~~v~--~d~~~l~~~l~~-~~~~v~~ 160 (370)
T 2z61_A 110 IDDGDEVLIQNPCYPCY---KNFIRFLGAKPVFCD--FTVESLEEALSD-KTKAIII 160 (370)
T ss_dssp CCTTCEEEEESSCCTHH---HHHHHHTTCEEEEEC--SSHHHHHHHCCS-SEEEEEE
T ss_pred cCCCCEEEEeCCCchhH---HHHHHHcCCEEEEeC--CCHHHHHHhccc-CceEEEE
Confidence 35677666655543322 233455677666665 456666665543 4555444
No 144
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=24.87 E-value=1.9e+02 Score=26.60 Aligned_cols=59 Identities=8% Similarity=0.104 Sum_probs=38.7
Q ss_pred CCCCCEEEEEcCCCCcHHHHHH---------HHHHcCcEEEecCCC---CCHHHHHHHHHh-cCCeEEEEcc
Q 013850 76 ITKKDVVLIFAPNSIHFPICFL---------GVIAIGAIASTANPV---YTVSELSKQVKD-SNPKLVITVP 134 (435)
Q Consensus 76 ~~~gd~V~l~~~~~~~~~~~~l---------A~~~~G~~~v~i~~~---~~~~~~~~~l~~-~~~~~vi~~~ 134 (435)
+++||.|++.....+.....++ .+...|+.+..++.. .+.+.++..+++ .++++|+++.
T Consensus 113 l~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~~~d~e~l~~~i~~~~~tklV~i~~ 184 (427)
T 3hvy_A 113 LRPNDTMMSICGMPYDTLHDIIGMDDSKKVGSLREYGVKYKMVDLKDGKVDINTVKEELKKDDSIKLIHIQR 184 (427)
T ss_dssp CCTTCEEEECSSSCCGGGHHHHTCCTTCCSCCTGGGTCEEEECCCBTTBCCHHHHHHHHHHCTTEEEEEEES
T ss_pred cCCCCEEEEeCCCCchhHHHHhccccchhhhHHHHcCCEEEEecCCCCCcCHHHHHHHhhCCCCCEEEEEEC
Confidence 6899988776523444333333 234568887777652 467788888775 5788888876
No 145
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=24.79 E-value=1.5e+02 Score=26.41 Aligned_cols=57 Identities=14% Similarity=-0.024 Sum_probs=27.0
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHcCcEE--EecCCC--CCHHHHHHHHHh-cCCeEEEEc
Q 013850 76 ITKKDVVLIFAPNSIHFPICFLGVIAIGAIA--STANPV--YTVSELSKQVKD-SNPKLVITV 133 (435)
Q Consensus 76 ~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~--v~i~~~--~~~~~~~~~l~~-~~~~~vi~~ 133 (435)
+++||.|.+..+..... ...-.+...|+.+ ++++.. .+.+.++..++. -++++|+.+
T Consensus 80 ~~~gd~Vl~~~~~~~~~-~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~ 141 (392)
T 2z9v_A 80 ISPDDVVLNLASGVYGK-GFGYWAKRYSPHLLEIEVPYNEAIDPQAVADMLKAHPEITVVSVC 141 (392)
T ss_dssp CCTTCCEEEEESSHHHH-HHHHHHHHHCSCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred cCCCCEEEEecCCcccH-HHHHHHHHcCCceEEeeCCCCCCCCHHHHHHHHhcCCCCcEEEEe
Confidence 35677666554432211 1111123346544 343332 356677776653 255666554
No 146
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=24.79 E-value=1.1e+02 Score=26.02 Aligned_cols=40 Identities=15% Similarity=0.152 Sum_probs=29.4
Q ss_pred HHHHHHHHhCCCCCCCEEEEEcCCCC-cHHHHHHHHHHcCc
Q 013850 65 IKVSHSFRHLGITKKDVVLIFAPNSI-HFPICFLGVIAIGA 104 (435)
Q Consensus 65 ~~la~~L~~~g~~~gd~V~l~~~~~~-~~~~~~lA~~~~G~ 104 (435)
..++..+.++|+.+++.|.|+|..+. ....+...+...|.
T Consensus 67 ~~~~~~~~~~gi~~~~~vvvyc~~g~~~s~~a~~~L~~~G~ 107 (271)
T 1e0c_A 67 EQLESLFGELGHRPEAVYVVYDDEGGGWAGRFIWLLDVIGQ 107 (271)
T ss_dssp HHHHHHHHHHTCCTTCEEEEECSSSSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCCCCeEEEEcCCCCccHHHHHHHHHHcCC
Confidence 46677777778888999999998775 55555556667776
No 147
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=24.71 E-value=1.9e+02 Score=25.69 Aligned_cols=53 Identities=17% Similarity=0.101 Sum_probs=30.7
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecCCC--------CCHHHHHHHHHhcCCeEEEEc
Q 013850 76 ITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPV--------YTVSELSKQVKDSNPKLVITV 133 (435)
Q Consensus 76 ~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~--------~~~~~~~~~l~~~~~~~vi~~ 133 (435)
+++||.|++..+.-.. ...++...|+.++.++.. .+.+.++..++. +++|+..
T Consensus 111 ~~~gd~vl~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~~--~~~v~i~ 171 (391)
T 4dq6_A 111 TKANDKIMIQEPVYSP---FNSVVKNNNRELIISPLQKLENGNYIMDYEDIENKIKD--VKLFILC 171 (391)
T ss_dssp SCTTCEEEECSSCCTH---HHHHHHHTTCEEEECCCEECTTSCEECCHHHHHHHCTT--EEEEEEE
T ss_pred CCCCCEEEEcCCCCHH---HHHHHHHcCCeEEeeeeeecCCCceEeeHHHHHHHhhc--CCEEEEE
Confidence 3677877655443322 233455677766666544 466777777766 5655543
No 148
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=24.68 E-value=2e+02 Score=25.74 Aligned_cols=20 Identities=35% Similarity=0.581 Sum_probs=10.4
Q ss_pred CHHHHHHHHHhcCCeEEEEc
Q 013850 114 TVSELSKQVKDSNPKLVITV 133 (435)
Q Consensus 114 ~~~~~~~~l~~~~~~~vi~~ 133 (435)
+.+.++..++..++++|+.+
T Consensus 126 d~~~l~~~i~~~~~~~v~~~ 145 (411)
T 3nnk_A 126 TPDQVEDAVKRIRPRLLLTV 145 (411)
T ss_dssp CHHHHHHHHHHHCCSEEEEE
T ss_pred CHHHHHHHHhhCCCeEEEEe
Confidence 34555555554455555544
No 149
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=24.60 E-value=1.9e+02 Score=25.67 Aligned_cols=55 Identities=20% Similarity=0.212 Sum_probs=23.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecC--C--CCCHHHHHHHHHhcCCeEEEE
Q 013850 77 TKKDVVLIFAPNSIHFPICFLGVIAIGAIASTAN--P--VYTVSELSKQVKDSNPKLVIT 132 (435)
Q Consensus 77 ~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~--~--~~~~~~~~~~l~~~~~~~vi~ 132 (435)
++||.|++..+.... ....-++...|+.++.++ . ..+.+.+...++..++++|+.
T Consensus 91 ~~gd~vl~~~~~~~~-~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~ 149 (396)
T 2ch1_A 91 EEGDRVLIAVNGIWA-ERAVEMSERYGADVRTIEGPPDRPFSLETLARAIELHQPKCLFL 149 (396)
T ss_dssp CTTCEEEEEESSHHH-HHHHHHHHHTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEE
T ss_pred CCCCeEEEEcCCccc-HHHHHHHHHcCCceEEecCCCCCCCCHHHHHHHHHhCCCCEEEE
Confidence 455655554443222 111113344454433332 2 234555555555434455544
No 150
>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*
Probab=24.57 E-value=1.8e+02 Score=25.87 Aligned_cols=57 Identities=14% Similarity=0.222 Sum_probs=31.6
Q ss_pred HHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecC--CC---CCHHHHHHHHHhcCCeEEE
Q 013850 71 FRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTAN--PV---YTVSELSKQVKDSNPKLVI 131 (435)
Q Consensus 71 L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~--~~---~~~~~~~~~l~~~~~~~vi 131 (435)
++..++++||.|++..+..... ..++...|+.++.++ +. .+.+.++..++. ++++|+
T Consensus 70 l~~l~~~~gd~Vi~~~~~~~~~---~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~i~~-~~~~v~ 131 (388)
T 1b9h_A 70 LQVMGVGPGTEVIVPAFTFISS---SQAAQRLGAVTVPVDVDAATYNLDPEAVAAAVTP-RTKVIM 131 (388)
T ss_dssp HHHTTCCTTCEEEEESSSCTHH---HHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCT-TEEEEC
T ss_pred HHHcCCCCcCEEEECCCccHHH---HHHHHHcCCEEEEEecCCCcCCCCHHHHHHhcCc-CceEEE
Confidence 3444567888877665544333 334566777555443 32 356666666542 455555
No 151
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=24.47 E-value=98 Score=27.38 Aligned_cols=10 Identities=0% Similarity=0.042 Sum_probs=5.1
Q ss_pred HHHHHHHHhh
Q 013850 323 KELMEDCQKN 332 (435)
Q Consensus 323 ~~~~~~~~~~ 332 (435)
.++.+.+.+.
T Consensus 302 ~~~~~~l~~~ 311 (382)
T 4hvk_A 302 ESIVLSLDMA 311 (382)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHC
Confidence 4555555444
No 152
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*
Probab=24.43 E-value=1.2e+02 Score=27.04 Aligned_cols=78 Identities=9% Similarity=0.076 Sum_probs=45.5
Q ss_pred ceeHHHHHHHHH--HHH-HHHHhCCCC-CCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCeE
Q 013850 54 SLSFSQFKSIVI--KVS-HSFRHLGIT-KKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKL 129 (435)
Q Consensus 54 ~~Ty~el~~~~~--~la-~~L~~~g~~-~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~ 129 (435)
.+++.+...... -.| +.|.+.+++ +|++|+|...-.+-..++.+|- ..|+.++.+..+ .+.+....++.+++.
T Consensus 152 ~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qlak-~~Ga~Vi~~~~~--~~~~~~~~~~lGa~~ 228 (357)
T 2cf5_A 152 GMAVEQAAPLLCAGVTVYSPLSHFGLKQPGLRGGILGLGGVGHMGVKIAK-AMGHHVTVISSS--NKKREEALQDLGADD 228 (357)
T ss_dssp SCCHHHHTGGGTHHHHHHHHHHHTSTTSTTCEEEEECCSHHHHHHHHHHH-HHTCEEEEEESS--TTHHHHHHTTSCCSC
T ss_pred CCCHHHhhhhhhhHHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHH-HCCCeEEEEeCC--hHHHHHHHHHcCCce
Confidence 467766432211 111 335566888 9999999986446666666554 468865554433 334444444778877
Q ss_pred EEEcc
Q 013850 130 VITVP 134 (435)
Q Consensus 130 vi~~~ 134 (435)
++...
T Consensus 229 vi~~~ 233 (357)
T 2cf5_A 229 YVIGS 233 (357)
T ss_dssp EEETT
T ss_pred eeccc
Confidence 76543
No 153
>4h27_A L-serine dehydratase/L-threonine deaminase; PLP dependent typeii, PLP binding, liver, lyase; HET: LLP; 1.30A {Homo sapiens} PDB: 1p5j_A* 1pwh_A* 1pwe_A*
Probab=24.33 E-value=1.3e+02 Score=27.01 Aligned_cols=88 Identities=11% Similarity=-0.011 Sum_probs=52.0
Q ss_pred ceeeeecCCCcceeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecCCCCCHHHHHHHH
Q 013850 43 KLALIDADSDESLSFSQFKSIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQV 122 (435)
Q Consensus 43 ~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~l 122 (435)
++.+-.++.+..-+|++-.. ...+.. +.+. |....+....+-.-..+.++|.+.|..++.+-|..........+
T Consensus 62 ~v~~K~E~~~ptGSfK~Rga-~~~i~~-a~~~----g~~~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~ 135 (364)
T 4h27_A 62 SVYLKMDSAQPSGSFKIRGI-GHFCKR-WAKQ----GCAHFVCSSSGNAGMAAAYAARQLGVPATIVVPGTTPALTIERL 135 (364)
T ss_dssp EEEEEEGGGSTTSBTHHHHH-HHHHHH-HHHT----TCCEEEECCSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHH
T ss_pred EEEEEeCCCCCCCCHHHHHH-HHHHHH-HHhc----CCCEEEEeCCChHHHHHHHHHHHhCCceEEEECCCCCHHHHHHH
Confidence 45555544345556665421 122222 2232 33344455556666777888889998555544554555566778
Q ss_pred HhcCCeEEEEcccc
Q 013850 123 KDSNPKLVITVPEL 136 (435)
Q Consensus 123 ~~~~~~~vi~~~~~ 136 (435)
+..++++++++...
T Consensus 136 ~~~GA~Vv~v~~~~ 149 (364)
T 4h27_A 136 KNEGATVKVVGELL 149 (364)
T ss_dssp HTTTCEEEEECSST
T ss_pred HHcCCEEEEECCCH
Confidence 89999999998643
No 154
>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}
Probab=24.13 E-value=1e+02 Score=26.86 Aligned_cols=41 Identities=12% Similarity=0.130 Sum_probs=34.2
Q ss_pred HHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcE
Q 013850 65 IKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI 105 (435)
Q Consensus 65 ~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~ 105 (435)
..+...+.+.++.++..|.++|..+.....+.+++..+|..
T Consensus 240 ~~l~~~~~~~~~~~~~~iv~yC~sG~rs~~a~~~L~~~G~~ 280 (302)
T 3olh_A 240 EEIRHLFQEKKVDLSKPLVATCGSGVTACHVALGAYLCGKP 280 (302)
T ss_dssp HHHHHHHHHTTCCTTSCEEEECSSSSTTHHHHHHHHTTTCC
T ss_pred HHHHHHHHhcCCCCCCCEEEECCChHHHHHHHHHHHHcCCC
Confidence 45666677778999999999999999888888888889973
No 155
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=24.12 E-value=2.3e+02 Score=24.93 Aligned_cols=54 Identities=19% Similarity=0.153 Sum_probs=32.9
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecCCC-------CCHHHHHHHHHhcCCeEEEEc
Q 013850 76 ITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPV-------YTVSELSKQVKDSNPKLVITV 133 (435)
Q Consensus 76 ~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~-------~~~~~~~~~l~~~~~~~vi~~ 133 (435)
+++||.|++..+.- . ....++...|+.++.++.. .+.+.++..+ ..++++|+..
T Consensus 103 ~~~gd~vl~~~~~~-~--~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l-~~~~~~v~i~ 163 (383)
T 3kax_A 103 TKENESVLVQPPIY-P--PFFEMVTTNNRQLCVSPLQKQNDTYAIDFEHLEKQF-QQGVKLMLLC 163 (383)
T ss_dssp CCTTCEEEECSSCC-H--HHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHH-TTTCCEEEEE
T ss_pred CCCCCEEEEcCCCc-H--HHHHHHHHcCCEEEeccceecCCcEEEcHHHHHHHh-CcCCeEEEEe
Confidence 46788777655433 2 2334566778877766542 4677777777 4456666543
No 156
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=24.09 E-value=2.4e+02 Score=21.45 Aligned_cols=74 Identities=9% Similarity=0.038 Sum_probs=44.0
Q ss_pred HHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHH---hcCCeEEEEccccHHHH
Q 013850 64 VIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVK---DSNPKLVITVPELWDKV 140 (435)
Q Consensus 64 ~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~l~---~~~~~~vi~~~~~~~~~ 140 (435)
...+...|.+. ++.++.|+++.....-...-.+...|..+..++...+..+...+++ .-..+++++++.....+
T Consensus 18 ~~~l~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G~ 94 (165)
T 1fuk_A 18 YECLTDLYDSI---SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGI 94 (165)
T ss_dssp HHHHHHHHHHT---TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTTTC
T ss_pred HHHHHHHHHhC---CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcChhhcCC
Confidence 34455555543 3456777776554443333444456777888898888766555544 45677888775444333
No 157
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=24.08 E-value=94 Score=27.62 Aligned_cols=15 Identities=7% Similarity=0.078 Sum_probs=8.0
Q ss_pred HHHHHHHHhhCCCCeee
Q 013850 323 KELMEDCQKNIPGATIF 339 (435)
Q Consensus 323 ~~~~~~~~~~~~~~~~~ 339 (435)
.++.+.+.+. ++.+.
T Consensus 302 ~~~~~~l~~~--gi~v~ 316 (382)
T 4eb5_A 302 ESIVLSLDMA--GIQAS 316 (382)
T ss_dssp HHHHHHHHHH--TCBCB
T ss_pred HHHHHHHHHC--CEEEe
Confidence 4566666554 34444
No 158
>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*
Probab=24.02 E-value=2.1e+02 Score=25.01 Aligned_cols=58 Identities=9% Similarity=-0.099 Sum_probs=38.5
Q ss_pred HhCCCCCCCEEEEEcCCC-CcHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCeEEEE
Q 013850 72 RHLGITKKDVVLIFAPNS-IHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVIT 132 (435)
Q Consensus 72 ~~~g~~~gd~V~l~~~~~-~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~ 132 (435)
+..++++|++|+|....+ +-..++.+| ...|+.++.+. .+.+.++...++.+++.++.
T Consensus 143 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a-~~~Ga~Vi~~~--~~~~~~~~~~~~~g~~~~~~ 201 (336)
T 4b7c_A 143 DVGQPKNGETVVISGAAGAVGSVAGQIA-RLKGCRVVGIA--GGAEKCRFLVEELGFDGAID 201 (336)
T ss_dssp HTTCCCTTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEE--SSHHHHHHHHHTTCCSEEEE
T ss_pred HhcCCCCCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEe--CCHHHHHHHHHHcCCCEEEE
Confidence 445899999999999855 555554444 46788666553 24555555547778877664
No 159
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=23.96 E-value=1.5e+02 Score=26.63 Aligned_cols=12 Identities=8% Similarity=0.390 Sum_probs=6.4
Q ss_pred cc-eeeccHHHHH
Q 013850 208 KG-VILTHKNFIA 219 (435)
Q Consensus 208 K~-v~~t~~~l~~ 219 (435)
-| +.+..+.+..
T Consensus 233 ~G~~~~~~~~~~~ 245 (406)
T 3cai_A 233 IGAMVFRDPSVMN 245 (406)
T ss_dssp CEEEEESCHHHHH
T ss_pred cCeEEEEehHHHh
Confidence 45 5566665443
No 160
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=23.87 E-value=82 Score=27.21 Aligned_cols=81 Identities=10% Similarity=0.064 Sum_probs=49.0
Q ss_pred eHHHHHHHHHHHHHHHHh--CCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecCC--CCCHHH---HHHHHHhcCCe
Q 013850 56 SFSQFKSIVIKVSHSFRH--LGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANP--VYTVSE---LSKQVKDSNPK 128 (435)
Q Consensus 56 Ty~el~~~~~~la~~L~~--~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~--~~~~~~---~~~~l~~~~~~ 128 (435)
.++.+.++...+-..+++ ..+..+.+..+.....+.++.-.+++-..+..- +++ .-++.+ +...+++.+++
T Consensus 137 N~~~~~~~L~~ld~~~~~~l~~~~~~~~~~vt~H~af~Y~~~~yGl~~~~~~~--~~~~~eps~~~l~~l~~~ik~~~v~ 214 (282)
T 3mfq_A 137 NTEKYQAQLDDLHAWVEKELSVIPKESRYLVTPHDAFNYFAASYDFTLYAPQG--VSTDSEVANSDMIETVNLIIDHNIK 214 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCGGGCEEECSSSCCHHHHHHTTCEEECSSC--SSSCSCCCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccCcEEEEECchHHHHHHHCCCeEecccc--cCCCCCCCHHHHHHHHHHHHHcCCC
Confidence 345555566666555553 244456778888888888877666655444211 222 224444 45566788999
Q ss_pred EEEEccccHH
Q 013850 129 LVITVPELWD 138 (435)
Q Consensus 129 ~vi~~~~~~~ 138 (435)
+||+++...+
T Consensus 215 ~if~e~~~~~ 224 (282)
T 3mfq_A 215 AIFTESTTNP 224 (282)
T ss_dssp EEECBTTSCT
T ss_pred EEEEeCCCCh
Confidence 9999875533
No 161
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=23.86 E-value=2.5e+02 Score=25.25 Aligned_cols=55 Identities=5% Similarity=0.045 Sum_probs=34.2
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecCC-----CCCHHHHHHHHHhc---CCe-EEEEc
Q 013850 76 ITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANP-----VYTVSELSKQVKDS---NPK-LVITV 133 (435)
Q Consensus 76 ~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~-----~~~~~~~~~~l~~~---~~~-~vi~~ 133 (435)
+++||.|++..|.-..+ ..++...|+.+++++. ..+.+.++..++.. +.+ +++++
T Consensus 122 ~~~gd~Vl~~~p~~~~~---~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~vi~~ 185 (413)
T 3t18_A 122 LDEGDPLICHDYYWAPY---RKICEEFGRNFKTFEFFTDDFAFNIDVYKEAIDEGIRDSDRIASLIN 185 (413)
T ss_dssp CCSSCEEEEESSCCTHH---HHHHHHHTCEEEEECCBCTTSSBCHHHHHHHHHHHHHHCSEEEEEEE
T ss_pred cCCCCEEEECCCCcccH---HHHHHHhCCeEEEeeccCCCCCcCHHHHHHHHHHHhhcCCCEEEEEe
Confidence 46899888877643333 2345567876666653 34677888877763 566 45544
No 162
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A
Probab=23.84 E-value=2.7e+02 Score=24.52 Aligned_cols=54 Identities=9% Similarity=0.078 Sum_probs=31.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecC--C--CCCHHHHHHHHHhcCCeEEEEc
Q 013850 77 TKKDVVLIFAPNSIHFPICFLGVIAIGAIASTAN--P--VYTVSELSKQVKDSNPKLVITV 133 (435)
Q Consensus 77 ~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~--~--~~~~~~~~~~l~~~~~~~vi~~ 133 (435)
++||.|++..+.-..+ ..++...|+.++.++ . ..+.+.++..++..++++|+++
T Consensus 114 ~~gd~Vl~~~~~y~~~---~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~ 171 (369)
T 3cq5_A 114 GPGRTALGFQPSYSMH---PILAKGTHTEFIAVSRGADFRIDMDVALEEIRAKQPDIVFVT 171 (369)
T ss_dssp STTCEEEEEESSCTHH---HHHHHHTTCEEEEEECCTTSSCCHHHHHHHHHHHCCSEEEEE
T ss_pred CCCCEEEEcCCChHHH---HHHHHHcCCEEEEecCCcCCCCCHHHHHHHhhccCCCEEEEe
Confidence 6788777766544332 234556676555443 3 2356777777765467777664
No 163
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=23.76 E-value=1.5e+02 Score=26.42 Aligned_cols=13 Identities=8% Similarity=0.424 Sum_probs=7.8
Q ss_pred cceeeccHHHHHH
Q 013850 208 KGVILTHKNFIAA 220 (435)
Q Consensus 208 K~v~~t~~~l~~~ 220 (435)
-|+.+..+.+...
T Consensus 233 ~G~~~~~~~~~~~ 245 (406)
T 1kmj_A 233 IGILYVKEALLQE 245 (406)
T ss_dssp CEEEEECHHHHHH
T ss_pred cEEEEEeHHHHhh
Confidence 3666666666544
No 164
>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1
Probab=23.56 E-value=1.3e+02 Score=26.91 Aligned_cols=75 Identities=12% Similarity=0.063 Sum_probs=43.6
Q ss_pred eeHHHHHHHHHH--H-HHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCeEEE
Q 013850 55 LSFSQFKSIVIK--V-SHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVI 131 (435)
Q Consensus 55 ~Ty~el~~~~~~--l-a~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~vi 131 (435)
+++.+....... . -+.|.+.++++|++|+|...-++-..++.+|- ..|+.++.+..+ .+.++ .+++.+++.++
T Consensus 168 ls~~~aa~l~~~~~tA~~al~~~~~~~g~~VlV~GaG~vG~~aiqlak-~~Ga~Vi~~~~~--~~~~~-~a~~lGa~~vi 243 (369)
T 1uuf_A 168 EQLAAVAPLLCAGITTYSPLRHWQAGPGKKVGVVGIGGLGHMGIKLAH-AMGAHVVAFTTS--EAKRE-AAKALGADEVV 243 (369)
T ss_dssp GGHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHH-HTTCEEEEEESS--GGGHH-HHHHHTCSEEE
T ss_pred CCHHHhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHH-HCCCEEEEEeCC--HHHHH-HHHHcCCcEEe
Confidence 677664322111 1 13455568999999999987445666655554 468865544432 33333 34567787776
Q ss_pred Ec
Q 013850 132 TV 133 (435)
Q Consensus 132 ~~ 133 (435)
..
T Consensus 244 ~~ 245 (369)
T 1uuf_A 244 NS 245 (369)
T ss_dssp ET
T ss_pred cc
Confidence 43
No 165
>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}
Probab=23.47 E-value=1.7e+02 Score=25.39 Aligned_cols=74 Identities=14% Similarity=0.184 Sum_probs=47.2
Q ss_pred cceeHHHHHHHHHHHH---HHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCeE
Q 013850 53 ESLSFSQFKSIVIKVS---HSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKL 129 (435)
Q Consensus 53 ~~~Ty~el~~~~~~la---~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~ 129 (435)
..+++.+.......++ +.|...++++|++|+|...-.+-.+++.+|- ..|+.++.+. + .+.+ ..+++.+++.
T Consensus 114 ~~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~a~qlak-~~Ga~Vi~~~-~--~~~~-~~~~~lGa~~ 188 (315)
T 3goh_A 114 DNLSFERAAALPCPLLTAWQAFEKIPLTKQREVLIVGFGAVNNLLTQMLN-NAGYVVDLVS-A--SLSQ-ALAAKRGVRH 188 (315)
T ss_dssp TTSCHHHHHTSHHHHHHHHHHHTTSCCCSCCEEEEECCSHHHHHHHHHHH-HHTCEEEEEC-S--SCCH-HHHHHHTEEE
T ss_pred CCCCHHHHhhCccHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCEEEEEE-C--hhhH-HHHHHcCCCE
Confidence 3578887643333332 3344568999999999999445666555554 5688766665 2 2222 3457788988
Q ss_pred EE
Q 013850 130 VI 131 (435)
Q Consensus 130 vi 131 (435)
++
T Consensus 189 v~ 190 (315)
T 3goh_A 189 LY 190 (315)
T ss_dssp EE
T ss_pred EE
Confidence 88
No 166
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=23.35 E-value=3e+02 Score=22.39 Aligned_cols=82 Identities=9% Similarity=0.012 Sum_probs=54.2
Q ss_pred cceeHHHHHHHHHHHHHH-------HHhC--CCCCCCEEEEEcCCC----CcHHHHHHHHHHcCcEEEecCCCCCHHHHH
Q 013850 53 ESLSFSQFKSIVIKVSHS-------FRHL--GITKKDVVLIFAPNS----IHFPICFLGVIAIGAIASTANPVYTVSELS 119 (435)
Q Consensus 53 ~~~Ty~el~~~~~~la~~-------L~~~--g~~~gd~V~l~~~~~----~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~ 119 (435)
..++..|+...++.+-.. +... .-....+|.+.+..+ +-..++...+-..|.-++-+..+.+.+++.
T Consensus 57 g~i~v~q~~~aa~~~~~~l~~l~~~l~~~~~~~~~~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv 136 (215)
T 3ezx_A 57 AEIFLPQIMMSGKAMSNAMEVLTPELEKNKKEGEEAGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVV 136 (215)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHHHHHHTSSCCC---CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHH
Confidence 456666655544444332 2221 123344666665543 444556666777899999999999999999
Q ss_pred HHHHhcCCeEEEE--cc
Q 013850 120 KQVKDSNPKLVIT--VP 134 (435)
Q Consensus 120 ~~l~~~~~~~vi~--~~ 134 (435)
..+.+.+|++|.. +.
T Consensus 137 ~~~~~~~~d~v~l~~S~ 153 (215)
T 3ezx_A 137 EEAAKHKGEKVLLVGSA 153 (215)
T ss_dssp HHHHHTTTSCEEEEEEC
T ss_pred HHHHHcCCCEEEEEchh
Confidence 9999999999998 64
No 167
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=23.27 E-value=3.8e+02 Score=23.53 Aligned_cols=54 Identities=9% Similarity=-0.005 Sum_probs=28.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecC--CC--CCHHHHHHHHHhcCCeEEEEc
Q 013850 77 TKKDVVLIFAPNSIHFPICFLGVIAIGAIASTAN--PV--YTVSELSKQVKDSNPKLVITV 133 (435)
Q Consensus 77 ~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~--~~--~~~~~~~~~l~~~~~~~vi~~ 133 (435)
.+||.|.+..+.... ..-++...|+.++.++ +. .+.+.++..++..++++|+.+
T Consensus 121 ~~gd~vl~~~~~~~~---~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~ 178 (397)
T 3f9t_A 121 NEHPKIIVPITAHFS---FEKGREMMDLEYIYAPIKEDYTIDEKFVKDAVEDYDVDGIIGI 178 (397)
T ss_dssp CSSCEEEEETTCCTH---HHHHHHHHTCEEEEECBCTTSSBCHHHHHHHHHHSCCCEEEEE
T ss_pred CCCeEEEECCcchhH---HHHHHHHcCceeEEEeeCCCCcCCHHHHHHHHhhcCCeEEEEE
Confidence 457766666554333 2233344465544443 32 256777777776445554433
No 168
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=22.93 E-value=3.7e+02 Score=23.25 Aligned_cols=55 Identities=15% Similarity=0.073 Sum_probs=35.4
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecCCC----CCHHHHHHHHHh-cCCeEEEEc
Q 013850 76 ITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPV----YTVSELSKQVKD-SNPKLVITV 133 (435)
Q Consensus 76 ~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~----~~~~~~~~~l~~-~~~~~vi~~ 133 (435)
.++||.|++..+.-..+ ..++...|+.++.++.+ .+.+.++..+++ .++++|+.+
T Consensus 89 ~~~gd~vl~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~v~l~ 148 (354)
T 3ly1_A 89 ASLEAQLVIPELTYGDG---EHFAKIAGMKVTKVKMLDNWAFDIEGLKAAVAAYSGPSIVYLV 148 (354)
T ss_dssp CCTTCEEEEESSSCTHH---HHHHHHTTCEEEEECCCTTSCCCHHHHHHHHHTCSSCEEEEEE
T ss_pred hCCCCeEEECCCCchHH---HHHHHHcCCEEEEecCCCCCCCCHHHHHHHhccCCCCCEEEEe
Confidence 47889888776654333 34555678766655433 256788888775 577877763
No 169
>3ujp_A Mn transporter subunit; manganese binding protein, metal binding protein; 2.70A {Synechocystis SP} PDB: 1xvl_A 3v63_A
Probab=22.80 E-value=1.1e+02 Score=26.89 Aligned_cols=81 Identities=11% Similarity=0.101 Sum_probs=49.1
Q ss_pred eHHHHHHHHHHHHHHHHh--CCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecCCCC--CHH---HHHHHHHhcCCe
Q 013850 56 SFSQFKSIVIKVSHSFRH--LGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVY--TVS---ELSKQVKDSNPK 128 (435)
Q Consensus 56 Ty~el~~~~~~la~~L~~--~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~--~~~---~~~~~l~~~~~~ 128 (435)
.++++.++...+-..+++ ..+....+..+...+.+.++.-.+++-..+ ...+.+.. ++. ++...+++.+++
T Consensus 164 Na~~~~~~L~~Ld~~~~~~l~~~p~~~~~~v~~H~af~Yfa~~yGl~~~~--~~~i~~~~ePs~~~l~~l~~~ik~~~v~ 241 (307)
T 3ujp_A 164 NAAVYSEQLKAIDRQLGADLEQVPANQRFLVSCEGAFSYLARDYGMEEIY--MWPINAEQQFTPKQVQTVIEEVKTNNVP 241 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSCGGGCEEEEEESTTHHHHHHTTCEEEE--EESSCCSSCCCHHHHHHHHHHHHTTTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccCCEEEEECchHHHHHHHCCCcEEE--eeccCCCCCCCHHHHHHHHHHHHhcCCc
Confidence 344455555556555544 244445567777788888887666665442 22344432 444 455667788999
Q ss_pred EEEEccccHH
Q 013850 129 LVITVPELWD 138 (435)
Q Consensus 129 ~vi~~~~~~~ 138 (435)
+||+++...+
T Consensus 242 ~If~e~~~~~ 251 (307)
T 3ujp_A 242 TIFCESTVSD 251 (307)
T ss_dssp EEEEETTSCS
T ss_pred EEEEeCCCCh
Confidence 9999875543
No 170
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=22.76 E-value=2.1e+02 Score=25.93 Aligned_cols=11 Identities=18% Similarity=0.510 Sum_probs=7.6
Q ss_pred ceeeccHHHHH
Q 013850 209 GVILTHKNFIA 219 (435)
Q Consensus 209 ~v~~t~~~l~~ 219 (435)
|+.+....++.
T Consensus 220 G~~~~~~~~~~ 230 (404)
T 1e5e_A 220 GLICGKADLLQ 230 (404)
T ss_dssp EEEEECHHHHH
T ss_pred EEEEECHHHHH
Confidence 77777776655
No 171
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A
Probab=22.67 E-value=1.6e+02 Score=26.09 Aligned_cols=74 Identities=20% Similarity=0.310 Sum_probs=44.5
Q ss_pred ceeHHHHHHHHHHHH---HHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCc-EEEecCCCCCHHHHHHHHHhcCCeE
Q 013850 54 SLSFSQFKSIVIKVS---HSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGA-IASTANPVYTVSELSKQVKDSNPKL 129 (435)
Q Consensus 54 ~~Ty~el~~~~~~la---~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~-~~v~i~~~~~~~~~~~~l~~~~~~~ 129 (435)
.+++.+..- ..-++ +.|...++++|++|+|...-++-..++.+|- ..|+ .++.+.. +.+. ...+++.+++.
T Consensus 145 ~l~~~~aa~-~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~aiqlak-~~Ga~~Vi~~~~--~~~~-~~~a~~lGa~~ 219 (356)
T 1pl8_A 145 NVTFEEGAL-IEPLSVGIHACRRGGVTLGHKVLVCGAGPIGMVTLLVAK-AMGAAQVVVTDL--SATR-LSKAKEIGADL 219 (356)
T ss_dssp TSCHHHHHH-HHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHH-HTTCSEEEEEES--CHHH-HHHHHHTTCSE
T ss_pred CCCHHHHHh-hchHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCCEEEEECC--CHHH-HHHHHHhCCCE
Confidence 467776432 22222 2344568999999999986445666656554 4687 5555443 2333 34556788877
Q ss_pred EEE
Q 013850 130 VIT 132 (435)
Q Consensus 130 vi~ 132 (435)
++.
T Consensus 220 vi~ 222 (356)
T 1pl8_A 220 VLQ 222 (356)
T ss_dssp EEE
T ss_pred EEc
Confidence 664
No 172
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=22.59 E-value=1.3e+02 Score=25.64 Aligned_cols=52 Identities=6% Similarity=0.218 Sum_probs=40.1
Q ss_pred ceeHHHHHH-----HHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcE
Q 013850 54 SLSFSQFKS-----IVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI 105 (435)
Q Consensus 54 ~~Ty~el~~-----~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~ 105 (435)
.+.+.++.+ ...++...+.+.++.++..|.++|..+.....+..++..+|..
T Consensus 200 nip~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ivv~C~~G~rs~~a~~~L~~~G~~ 256 (280)
T 1urh_A 200 NVPWTELVREGELKTTDELDAIFFGRGVSYDKPIIVSCGSGVTAAVVLLALATLDVP 256 (280)
T ss_dssp ECCGGGGBSSSSBCCHHHHHHHHHTTTCCSSSCEEEECCSSSTHHHHHHHHHHTTCS
T ss_pred EeeHHHhhcCCccCCHHHHHHHHHHcCCCCCCCEEEECChHHHHHHHHHHHHHcCCC
Confidence 456666654 1235666666678888999999999999999999999999973
No 173
>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A
Probab=22.40 E-value=1.3e+02 Score=25.97 Aligned_cols=41 Identities=7% Similarity=0.007 Sum_probs=33.6
Q ss_pred HHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcE
Q 013850 65 IKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI 105 (435)
Q Consensus 65 ~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~ 105 (435)
..+...+.+.++.++..|.++|..+.....+.+++..+|..
T Consensus 226 ~~l~~~~~~~~~~~~~~ivv~C~sG~rs~~a~~~L~~~G~~ 266 (296)
T 1rhs_A 226 EELRAMFEAKKVDLTKPLIATCRKGVTACHIALAAYLCGKP 266 (296)
T ss_dssp HHHHHHHHHTTCCTTSCEEEECSSSSTHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCC
Confidence 34555666668888999999999999998888888899974
No 174
>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme, tryptophan synthase beta like PLP-dependent enzymes superfamily; HET: IT1; 2.00A {Escherichia coli} PDB: 4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A*
Probab=22.32 E-value=3.3e+02 Score=24.66 Aligned_cols=56 Identities=11% Similarity=-0.008 Sum_probs=39.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCeEEEEccccH
Q 013850 82 VLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVPELW 137 (435)
Q Consensus 82 V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~~~~ 137 (435)
..+....+-.-..+.++|.++|..++.+-|..........++..++++++++....
T Consensus 114 ~vv~aSsGNhg~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vv~v~~~~~ 169 (398)
T 4d9i_A 114 TFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTDMNYD 169 (398)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTCEEEEEECTTCCHHHHHHHHTTTCEEEECSSCHH
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHHcCCEEEEECCCHH
Confidence 34445556677777888889998665555555555566777999999999987543
No 175
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=22.28 E-value=93 Score=27.72 Aligned_cols=60 Identities=20% Similarity=0.180 Sum_probs=31.5
Q ss_pred HHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecCCC--C---CHHHHHHHHHhcCCeEEEE
Q 013850 69 HSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPV--Y---TVSELSKQVKDSNPKLVIT 132 (435)
Q Consensus 69 ~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~--~---~~~~~~~~l~~~~~~~vi~ 132 (435)
..|+..++++||.|.+..+.... ...++...|+.++.++.+ . +.+.++..++. ++++|+.
T Consensus 66 ~~l~~l~~~~gd~Vi~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~~ 130 (373)
T 3frk_A 66 LILKGYDIGFGDEVIVPSNTFIA---TALAVSYTGAKPIFVEPDIRTYNIDPSLIESAITE-KTKAIIA 130 (373)
T ss_dssp HHHHHTTCCTTCEEEEETTSCTH---HHHHHHHHSCEEEEECEETTTTEECGGGTGGGCCT-TEEEEEE
T ss_pred HHHHHcCCCCcCEEEECCCCcHH---HHHHHHHcCCEEEEEeccccccCcCHHHHHHhcCC-CCeEEEE
Confidence 33444567788877666554433 233455667665554432 1 44555544443 4555554
No 176
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=22.24 E-value=3.4e+02 Score=23.99 Aligned_cols=12 Identities=8% Similarity=-0.020 Sum_probs=7.6
Q ss_pred ceeeccHHHHHH
Q 013850 209 GVILTHKNFIAA 220 (435)
Q Consensus 209 ~v~~t~~~l~~~ 220 (435)
|+.+....+...
T Consensus 230 G~l~~~~~~~~~ 241 (393)
T 1vjo_A 230 SPFTMSSRAIEK 241 (393)
T ss_dssp EEEEECHHHHHH
T ss_pred EEEEECHHHHHH
Confidence 677777666543
No 177
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*
Probab=22.11 E-value=2.3e+02 Score=25.36 Aligned_cols=58 Identities=22% Similarity=0.315 Sum_probs=30.4
Q ss_pred HHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecC--C---CCCHHHHHHHHHhcCCeEEEE
Q 013850 71 FRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTAN--P---VYTVSELSKQVKDSNPKLVIT 132 (435)
Q Consensus 71 L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~--~---~~~~~~~~~~l~~~~~~~vi~ 132 (435)
++..++++||.|++..+.... ...++...|+.++.++ + ..+.+.++..++. ++++|+.
T Consensus 95 l~~~~~~~gd~vl~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~ 157 (399)
T 2oga_A 95 LRGLGIGPGDEVIVPSHTYIA---SWLAVSATGATPVPVEPHEDHPTLDPLLVEKAITP-RTRALLP 157 (399)
T ss_dssp HHHTTCCTTCEEEEESSSCTH---HHHHHHHTTCEEEEECBCSSSSSBCHHHHHHHCCT-TEEEECC
T ss_pred HHHhCCCCcCEEEECCCccHH---HHHHHHHCCCEEEEEecCCCCCCcCHHHHHHhcCC-CCeEEEE
Confidence 344446778877666554332 2234455676554443 2 2345666665543 4566654
No 178
>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}
Probab=22.08 E-value=1.9e+02 Score=25.42 Aligned_cols=54 Identities=6% Similarity=-0.042 Sum_probs=35.4
Q ss_pred CCCCCCEEEEEcCCCCcHHHHHHHHHHc-CcEEEecCCCCCHHHHHHHHHhcCCeEEEE
Q 013850 75 GITKKDVVLIFAPNSIHFPICFLGVIAI-GAIASTANPVYTVSELSKQVKDSNPKLVIT 132 (435)
Q Consensus 75 g~~~gd~V~l~~~~~~~~~~~~lA~~~~-G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~ 132 (435)
++ +|++|+|...-.+-..++.+|-... |+.++.+.. +.+.+ ..+++.+++.++.
T Consensus 168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~--~~~~~-~~~~~lGa~~vi~ 222 (344)
T 2h6e_A 168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISR--SKKHR-DFALELGADYVSE 222 (344)
T ss_dssp TC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECS--CHHHH-HHHHHHTCSEEEC
T ss_pred CC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeC--CHHHH-HHHHHhCCCEEec
Confidence 78 9999999998556666666665442 876555543 33443 3456678877763
No 179
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=22.04 E-value=1.1e+02 Score=22.74 Aligned_cols=52 Identities=2% Similarity=-0.019 Sum_probs=35.9
Q ss_pred ceeHHHHHHHH----HHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcE
Q 013850 54 SLSFSQFKSIV----IKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAI 105 (435)
Q Consensus 54 ~~Ty~el~~~~----~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~ 105 (435)
.+.+.++.+.. ..+...+...++.++..|.++|..+.....+...+...|..
T Consensus 62 nip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ivvyC~~G~rs~~aa~~L~~~G~~ 117 (139)
T 3d1p_A 62 NVPYRSHPDAFALDPLEFEKQIGIPKPDSAKELIFYCASGKRGGEAQKVASSHGYS 117 (139)
T ss_dssp ECCTTTCTTGGGSCHHHHHHHHSSCCCCTTSEEEEECSSSHHHHHHHHHHHTTTCC
T ss_pred EcCHHHhhhhccCCHHHHHHHHhccCCCCCCeEEEECCCCchHHHHHHHHHHcCCC
Confidence 45555553322 24445555557788899999999998887777888888864
No 180
>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*
Probab=22.01 E-value=3.9e+02 Score=23.19 Aligned_cols=56 Identities=23% Similarity=0.262 Sum_probs=37.6
Q ss_pred CCCCCCCEEEEEcCCC-CcHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCeEEEEc
Q 013850 74 LGITKKDVVLIFAPNS-IHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITV 133 (435)
Q Consensus 74 ~g~~~gd~V~l~~~~~-~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~ 133 (435)
.++++|++|+|....+ +-..++.+| ...|+.++.+.. +.+.++ .+++.+++.++..
T Consensus 144 ~~~~~g~~vlV~Ga~g~iG~~~~~~a-~~~Ga~Vi~~~~--~~~~~~-~~~~~ga~~~~~~ 200 (334)
T 3qwb_A 144 YHVKKGDYVLLFAAAGGVGLILNQLL-KMKGAHTIAVAS--TDEKLK-IAKEYGAEYLINA 200 (334)
T ss_dssp SCCCTTCEEEESSTTBHHHHHHHHHH-HHTTCEEEEEES--SHHHHH-HHHHTTCSEEEET
T ss_pred ccCCCCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEeC--CHHHHH-HHHHcCCcEEEeC
Confidence 4899999999998554 555555554 457887665543 344444 5677888877754
No 181
>1zd0_A Hypothetical protein PF0523; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: d.329.1.1
Probab=21.95 E-value=1e+02 Score=23.67 Aligned_cols=58 Identities=9% Similarity=0.162 Sum_probs=37.4
Q ss_pred HHHHHHHHhCCCCCC-CEEEEEcCCCCcHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhc
Q 013850 65 IKVSHSFRHLGITKK-DVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDS 125 (435)
Q Consensus 65 ~~la~~L~~~g~~~g-d~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~l~~~ 125 (435)
+++..+|+..|+++| +.++++..+..+-+--+ .-..|...+|++. .+.+.+....++.
T Consensus 86 rQIs~Alk~~Gi~~g~n~ivv~i~~~e~~~~~l--~~~i~g~~v~l~~-~d~~~iKk~~e~~ 144 (150)
T 1zd0_A 86 RQIKEAIKKVGAKEGENYIVTFGENASALLQKI--LSTLEIKELELER-CDLEYAKKAFEDI 144 (150)
T ss_dssp SSHHHHHHHHBCCSEEEEEEEESTTHHHHHHHH--HHHTTCEEECCCC-CCHHHHHHHHHHH
T ss_pred chHHHHHHHhCCCCCCceEEEEEcCcHHHHHHH--HHHhCCeeccccc-CCHHHHHHHHHHH
Confidence 556677888899988 45555554444333222 2445888888876 6777777776654
No 182
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Probab=21.91 E-value=4.4e+02 Score=23.77 Aligned_cols=55 Identities=20% Similarity=0.138 Sum_probs=36.7
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhc---CCeEEEEcc
Q 013850 76 ITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDS---NPKLVITVP 134 (435)
Q Consensus 76 ~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~l~~~---~~~~vi~~~ 134 (435)
.++||.|.+-.+... ...-++...|+.+++++ ..+.+.++..++.. ++++|+++.
T Consensus 145 ~~~gd~vl~~~~~h~---~~~~~~~~~g~~~~~~~-~~d~~~le~~l~~~~~~~~~~v~~~~ 202 (427)
T 2w8t_A 145 AGKGEYVILDADSHA---SIYDGCQQGNAEIVRFR-HNSVEDLDKRLGRLPKEPAKLVVLEG 202 (427)
T ss_dssp SCTTCEEEEETTCCH---HHHHHHHHSCSEEEEEC-TTCHHHHHHHHHTSCSSSCEEEEEES
T ss_pred cCCCCEEEECCcccH---HHHHHHHHcCCeeEEeC-CCCHHHHHHHHHhccCCCCeEEEEcC
Confidence 467887777655433 33445666788877775 45777888888764 677777765
No 183
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=21.88 E-value=2e+02 Score=26.11 Aligned_cols=55 Identities=11% Similarity=0.041 Sum_probs=25.5
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHH-HHHcCcEEEecCCCCCHHHHHHHHHhcCCeEEEEc
Q 013850 76 ITKKDVVLIFAPNSIHFPICFLG-VIAIGAIASTANPVYTVSELSKQVKDSNPKLVITV 133 (435)
Q Consensus 76 ~~~gd~V~l~~~~~~~~~~~~lA-~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~ 133 (435)
+++||.|.+..+........+.. +-..|+.++.++.+ .+.++..++. ++++|+++
T Consensus 92 ~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~l~~~i~~-~~~~v~~~ 147 (412)
T 2cb1_A 92 LRPGDEVVAAKGLFGQTIGLFGQVLSLMGVTVRYVDPE--PEAVREALSA-KTRAVFVE 147 (412)
T ss_dssp CCTTCEEEEETTCCHHHHHHHHHTTTTTTCEEEEECSS--HHHHHHHCCT-TEEEEEEE
T ss_pred hCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC--HHHHHHHhcc-CCeEEEEe
Confidence 45677665554433222211111 23456655555443 5555555443 45555553
No 184
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=21.76 E-value=3.2e+02 Score=25.48 Aligned_cols=70 Identities=7% Similarity=0.016 Sum_probs=50.5
Q ss_pred HHHHHHHhCC-CCCCCEEEEEcCCCCcHHHHHHHHHH----cC--cEEEecCCCCC-H------HHHHHHHHhcCCeEEE
Q 013850 66 KVSHSFRHLG-ITKKDVVLIFAPNSIHFPICFLGVIA----IG--AIASTANPVYT-V------SELSKQVKDSNPKLVI 131 (435)
Q Consensus 66 ~la~~L~~~g-~~~gd~V~l~~~~~~~~~~~~lA~~~----~G--~~~v~i~~~~~-~------~~~~~~l~~~~~~~vi 131 (435)
++.+.+.+.+ +.++++|+|.+.-+.+..+++..+.. .| ..++-++..+. . +.+..+.+..+..+.+
T Consensus 4 kv~~~i~~~~l~~~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~~~v~avhvdhglrg~~s~~~~~~v~~~~~~lgi~~~v 83 (464)
T 3a2k_A 4 KVRAFIHRHQLLSEGAAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHMFRGRESEEEMEFVKRFCVERRILCET 83 (464)
T ss_dssp HHHHHHHHTCSSSCSSBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEECTTCTHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCCCCCCEEEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEEEEECCCCccccHHHHHHHHHHHHHcCCcEEE
Confidence 4566676655 57899999999999999988777766 34 45666776664 2 3455677888888887
Q ss_pred Eccc
Q 013850 132 TVPE 135 (435)
Q Consensus 132 ~~~~ 135 (435)
.+-+
T Consensus 84 ~~~~ 87 (464)
T 3a2k_A 84 AQID 87 (464)
T ss_dssp EECC
T ss_pred EEec
Confidence 7643
No 185
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC trans binding protein; 1.80A {Treponema pallidum} SCOP: c.92.2.2 PDB: 1k0f_A
Probab=21.68 E-value=1.1e+02 Score=26.95 Aligned_cols=79 Identities=10% Similarity=0.133 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHhC--CCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecCC--CCCHHH---HHHHHHhcCCeE
Q 013850 57 FSQFKSIVIKVSHSFRHL--GITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANP--VYTVSE---LSKQVKDSNPKL 129 (435)
Q Consensus 57 y~el~~~~~~la~~L~~~--g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~--~~~~~~---~~~~l~~~~~~~ 129 (435)
++++.++..++-..+++. .++...+..+...+.+.++.-.+++-..+.. -+.+ .-++.+ +...++..++++
T Consensus 172 ~~~~~~~L~~Ld~~~~~~l~~~~~~~~~~v~~H~af~Yfa~~yGl~~~~~~--~~~~~~eps~~~l~~l~~~ik~~~v~~ 249 (313)
T 1toa_A 172 YQAYQQQLDKLDAYVRRKAQSLPAERRVLVTAHDAFGYFSRAYGFEVKGLQ--GVSTASEASAHDMQELAAFIAQRKLPA 249 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCGGGCEEEEEESCCHHHHHHHTCEEEEEE--CSSCSSCCCHHHHHHHHHHHHHTTCSE
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCccCCEEEEECCcHHHHHHHCCCeEEEee--ccCCCCCCCHHHHHHHHHHHHHcCCCE
Confidence 344555555554444331 3444456677788888888877777655432 2322 234544 445667889999
Q ss_pred EEEccccH
Q 013850 130 VITVPELW 137 (435)
Q Consensus 130 vi~~~~~~ 137 (435)
||+++...
T Consensus 250 If~e~~~~ 257 (313)
T 1toa_A 250 IFIESSIP 257 (313)
T ss_dssp EEEETTSC
T ss_pred EEEeCCCC
Confidence 99987543
No 186
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=21.62 E-value=1.9e+02 Score=26.40 Aligned_cols=58 Identities=9% Similarity=0.060 Sum_probs=35.0
Q ss_pred CCCCCEEEEEcCCCCcHHHHHH--------HHHHcCcEEEecCCC----CCHHHHHHHHHhcCCeEEEEcc
Q 013850 76 ITKKDVVLIFAPNSIHFPICFL--------GVIAIGAIASTANPV----YTVSELSKQVKDSNPKLVITVP 134 (435)
Q Consensus 76 ~~~gd~V~l~~~~~~~~~~~~l--------A~~~~G~~~v~i~~~----~~~~~~~~~l~~~~~~~vi~~~ 134 (435)
+++||.|.+.....+.....++ .+...|+.+..++.. .+.+.++..++. ++++|+++.
T Consensus 98 l~~GD~Vl~~~~~~y~~~~~~~~~~g~~~~~l~~~G~~~~~v~~~~~g~~d~e~l~~ai~~-~tklV~i~~ 167 (409)
T 3jzl_A 98 LRPDDELLYITGQPYDTLEEIVGIRKQGQGSLKDFHIGYSSVPLLENGDVDFPRIAKKMTP-KTKMIGIQR 167 (409)
T ss_dssp CCTTCEEEECSSSCCTTHHHHHTSSSSSSSCTGGGTCEEEECCCCTTSCCCHHHHHHHCCT-TEEEEEEEC
T ss_pred cCCCCEEEEeCCCCcHhHHHHHhcccchhhHHHHcCCEEEEeCCCCCCCcCHHHHHHhccC-CCeEEEEEC
Confidence 5788987766523444443333 234568777766553 466777766653 567777765
No 187
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=21.49 E-value=4.6e+02 Score=25.28 Aligned_cols=56 Identities=11% Similarity=0.017 Sum_probs=42.7
Q ss_pred CCEEEEEcCCC----CcHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCeEEEEcc
Q 013850 79 KDVVLIFAPNS----IHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVP 134 (435)
Q Consensus 79 gd~V~l~~~~~----~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~ 134 (435)
+-+|++.+..+ +...++...+-..|.-++-+....+.+++...++..++++|..+.
T Consensus 98 ~~kVLlatv~GD~HdiG~~iva~~L~~~G~eVi~LG~~vP~e~iv~aa~~~~~diVgLS~ 157 (579)
T 3bul_A 98 NGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRTAKEVNADLIGLSG 157 (579)
T ss_dssp SCEEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCSSBCHHHHHHHHHHHTCSEEEEEC
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEEe
Confidence 34566555432 344455556667899999999999999999999999999999875
No 188
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=21.48 E-value=86 Score=26.87 Aligned_cols=40 Identities=15% Similarity=0.272 Sum_probs=32.3
Q ss_pred HHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHH-HcCc
Q 013850 65 IKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVI-AIGA 104 (435)
Q Consensus 65 ~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~-~~G~ 104 (435)
..+...+.+.|+.+++.|.++|..+.....+.+.+. .+|.
T Consensus 219 ~~l~~~~~~~g~~~~~~ivvyC~~G~rs~~a~~~L~~~~G~ 259 (285)
T 1uar_A 219 EELRALYEPLGITKDKDIVVYCRIAERSSHSWFVLKYLLGY 259 (285)
T ss_dssp HHHHHHHGGGTCCTTSEEEEECSSHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHcCCCCCCCEEEECCchHHHHHHHHHHHHHcCC
Confidence 455667777789999999999998887777777777 7886
No 189
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*
Probab=21.41 E-value=85 Score=27.94 Aligned_cols=60 Identities=17% Similarity=0.084 Sum_probs=32.2
Q ss_pred HHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecCCC-----CCHHHHHHHHHhcCCeEEEE
Q 013850 69 HSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPV-----YTVSELSKQVKDSNPKLVIT 132 (435)
Q Consensus 69 ~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~-----~~~~~~~~~l~~~~~~~vi~ 132 (435)
..|+..++++||.|++..+... ....++...|+.++.++.+ .+.+.++..++. ++++|+.
T Consensus 65 ~al~~~~~~~gd~Vi~~~~~~~---~~~~~~~~~G~~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~ 129 (367)
T 3nyt_A 65 IVQMALGVGPGDEVITPGFTYV---ATAETVALLGAKPVYVDIDPRTYNLDPQLLEAAITP-RTKAIIP 129 (367)
T ss_dssp HHHHHTTCCTTCEEEEESSSCT---HHHHHHHHTTCEEEEECBCTTTCSBCGGGTGGGCCT-TEEEECC
T ss_pred HHHHHhCCCCcCEEEECCCccH---HHHHHHHHcCCEEEEEecCCccCCcCHHHHHHhcCc-CCcEEEe
Confidence 3445556788888776655332 2344456677765554432 244555544432 4555553
No 190
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=21.39 E-value=1e+02 Score=18.57 Aligned_cols=19 Identities=21% Similarity=0.228 Sum_probs=14.8
Q ss_pred HHhCCCCCCCEEEEEcCCC
Q 013850 71 FRHLGITKKDVVLIFAPNS 89 (435)
Q Consensus 71 L~~~g~~~gd~V~l~~~~~ 89 (435)
..++|+++||.|.+...+.
T Consensus 21 r~~lgi~~Gd~v~i~~~~~ 39 (53)
T 2l66_A 21 RQKFQIKEGDLVKVTFDES 39 (53)
T ss_dssp HHHSCCCTTCEEEEEECSS
T ss_pred HHHcCcCCCCEEEEEEECC
Confidence 3467999999998877654
No 191
>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A
Probab=21.35 E-value=2.5e+02 Score=25.94 Aligned_cols=77 Identities=14% Similarity=0.146 Sum_probs=46.5
Q ss_pred cceeHHHHHHHH--HHHHH-HHHh---CCCCCCCEEEEEcCCC-CcHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhc
Q 013850 53 ESLSFSQFKSIV--IKVSH-SFRH---LGITKKDVVLIFAPNS-IHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDS 125 (435)
Q Consensus 53 ~~~Ty~el~~~~--~~la~-~L~~---~g~~~gd~V~l~~~~~-~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~l~~~ 125 (435)
..+++.+..... .-.|. .|.. .++++|++|+|....+ +-.+++.+| ...|+.++.+.. +.+.++ .+++.
T Consensus 197 ~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~g~~VlV~GasG~vG~~avqla-k~~Ga~vi~~~~--~~~~~~-~~~~l 272 (456)
T 3krt_A 197 DHLSWEEAAAPGLVNSTAYRQLVSRNGAGMKQGDNVLIWGASGGLGSYATQFA-LAGGANPICVVS--SPQKAE-ICRAM 272 (456)
T ss_dssp TTSCHHHHHSSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHHHHHHH-HHTTCEEEEEES--SHHHHH-HHHHH
T ss_pred CCCCHHHHHHhhhHHHHHHHHHHhhcccCCCCCCEEEEECCCCHHHHHHHHHH-HHcCCeEEEEEC--CHHHHH-HHHhh
Confidence 356777754322 22222 2322 5889999999998855 555555544 467887665542 444444 55778
Q ss_pred CCeEEEEc
Q 013850 126 NPKLVITV 133 (435)
Q Consensus 126 ~~~~vi~~ 133 (435)
+++.++..
T Consensus 273 Ga~~vi~~ 280 (456)
T 3krt_A 273 GAEAIIDR 280 (456)
T ss_dssp TCCEEEET
T ss_pred CCcEEEec
Confidence 88887753
No 192
>2ayi_A Aminopeptidase T; metallopeptidase, hydrolase; 3.70A {Thermus thermophilus} SCOP: e.60.1.1
Probab=21.26 E-value=1.4e+02 Score=27.50 Aligned_cols=51 Identities=22% Similarity=0.107 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHh--CCCCCCCEEEEEcCCCCc--HHHHHHHHHHcCcEEEecC
Q 013850 60 FKSIVIKVSHSFRH--LGITKKDVVLIFAPNSIH--FPICFLGVIAIGAIASTAN 110 (435)
Q Consensus 60 l~~~~~~la~~L~~--~g~~~gd~V~l~~~~~~~--~~~~~lA~~~~G~~~v~i~ 110 (435)
+..+..++|..+.+ .++++|+.|.|..+.... .-.+.-++..+|+.++.+.
T Consensus 4 ~~~~l~k~A~~~v~~~~~lq~Ge~vlI~~~~~~~~l~r~l~~~a~~~Ga~~v~v~ 58 (408)
T 2ayi_A 4 FKRNLEKLAELAIRVGLNLEKGQEVIATAPIEAVDFVRLLAEKAYREGASLFTVI 58 (408)
T ss_dssp CHHHHHHHHHHHHHTTTCCCTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHHHHHhCcCCCCCCEEEEEECCchHHHHHHHHHHHHHcCCceEEEE
Confidence 35567778887765 588999999999986533 2334456777898777654
No 193
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=21.10 E-value=2.4e+02 Score=25.26 Aligned_cols=58 Identities=12% Similarity=-0.004 Sum_probs=29.7
Q ss_pred CCCCCEEEEEcCCCCcHH--HHHHHHHHcCcEEEecCC-----CCCHHHHHHHHHhcCCeEEEEc
Q 013850 76 ITKKDVVLIFAPNSIHFP--ICFLGVIAIGAIASTANP-----VYTVSELSKQVKDSNPKLVITV 133 (435)
Q Consensus 76 ~~~gd~V~l~~~~~~~~~--~~~lA~~~~G~~~v~i~~-----~~~~~~~~~~l~~~~~~~vi~~ 133 (435)
+++||.|++..+.....+ ...+.....+...++++. ..+.+.++..++..++++|+++
T Consensus 115 ~~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~ 179 (425)
T 3ecd_A 115 AKPGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSRDTMLIDYDQVEALAQQHKPSLIIAG 179 (425)
T ss_dssp CCTTCEEEEECC------------------CEEEEECCCTTTSSCCHHHHHHHHHHHCCSEEEEE
T ss_pred cCCCCEEEEcccccccceecchhhhhcccceeeeecCCCcccCccCHHHHHHHHhhcCCcEEEEc
Confidence 578998887766443211 111112222334444432 3467888888877778888876
No 194
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=21.00 E-value=2.7e+02 Score=26.47 Aligned_cols=61 Identities=10% Similarity=0.014 Sum_probs=43.3
Q ss_pred hCC-CCCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCeEEEEcc
Q 013850 73 HLG-ITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVP 134 (435)
Q Consensus 73 ~~g-~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~ 134 (435)
+.| +++|+.|+. ...+-.-..+.++|.++|.-++.+-|......-...++..+++++++..
T Consensus 106 ~~g~~~~g~~vv~-~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~ 167 (527)
T 3pc3_A 106 EQGLLKPGYTIIE-PTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTLGAKIIRTPT 167 (527)
T ss_dssp HHTCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECT
T ss_pred HcCCCCCCCEEEE-eCCCHHHHHHHHHHHHhCCeEEEEEcCCCCHHHHHHHHHCCCEEEEeCC
Confidence 345 477886654 5556667777888999998665555555445566778999999999975
No 195
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=20.82 E-value=2.9e+02 Score=21.23 Aligned_cols=42 Identities=5% Similarity=-0.063 Sum_probs=34.4
Q ss_pred HHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCeEEEEcc
Q 013850 93 PICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITVP 134 (435)
Q Consensus 93 ~~~~lA~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~~ 134 (435)
.++...+-..|.-++-+....+.+++...+.+.+|++|..+.
T Consensus 36 ~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~~~~~diV~lS~ 77 (161)
T 2yxb_A 36 KVVARALRDAGFEVVYTGLRQTPEQVAMAAVQEDVDVIGVSI 77 (161)
T ss_dssp HHHHHHHHHTTCEEECCCSBCCHHHHHHHHHHTTCSEEEEEE
T ss_pred HHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcCCCEEEEEe
Confidence 334444555799999999999999999999999999999875
No 196
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=20.74 E-value=3.1e+02 Score=21.58 Aligned_cols=72 Identities=13% Similarity=0.125 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHH---hcCCeEEEEccccH
Q 013850 62 SIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVK---DSNPKLVITVPELW 137 (435)
Q Consensus 62 ~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~l~---~~~~~~vi~~~~~~ 137 (435)
++...+...|.+. +.++.|+++.....-.+.-.+...|..+..++...+.++...+++ .-+.+++++++...
T Consensus 41 ~K~~~L~~~l~~~----~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~ 115 (191)
T 2p6n_A 41 AKMVYLLECLQKT----PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVAS 115 (191)
T ss_dssp GHHHHHHHHHTTS----CSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECHHHH
T ss_pred HHHHHHHHHHHhC----CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCchh
Confidence 3445555555542 345777777654444333444456888888999988766655544 45678888775443
No 197
>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A
Probab=20.67 E-value=2.6e+02 Score=24.81 Aligned_cols=76 Identities=11% Similarity=0.010 Sum_probs=44.5
Q ss_pred ceeHHHHHHHHH--HH-HHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCeEE
Q 013850 54 SLSFSQFKSIVI--KV-SHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV 130 (435)
Q Consensus 54 ~~Ty~el~~~~~--~l-a~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v 130 (435)
.+++.+...... .. -+.|.+.++++|++|+|...-.+-..++.+|- ..|+.++.+..+.. .+ ..+++.+++.+
T Consensus 152 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~~~qlak-~~Ga~Vi~~~~~~~--~~-~~~~~lGa~~v 227 (360)
T 1piw_A 152 NIPSHLAAPLLCGGLTVYSPLVRNGCGPGKKVGIVGLGGIGSMGTLISK-AMGAETYVISRSSR--KR-EDAMKMGADHY 227 (360)
T ss_dssp TSCHHHHGGGGTHHHHHHHHHHHTTCSTTCEEEEECCSHHHHHHHHHHH-HHTCEEEEEESSST--TH-HHHHHHTCSEE
T ss_pred CCCHHHhhhhhhhHHHHHHHHHHcCCCCCCEEEEECCCHHHHHHHHHHH-HCCCEEEEEcCCHH--HH-HHHHHcCCCEE
Confidence 467766432211 11 23445578999999999998445666655554 46876555543322 22 23456778877
Q ss_pred EEc
Q 013850 131 ITV 133 (435)
Q Consensus 131 i~~ 133 (435)
+..
T Consensus 228 ~~~ 230 (360)
T 1piw_A 228 IAT 230 (360)
T ss_dssp EEG
T ss_pred EcC
Confidence 643
No 198
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=20.67 E-value=2.6e+02 Score=24.76 Aligned_cols=12 Identities=0% Similarity=-0.086 Sum_probs=7.6
Q ss_pred ceeeccHHHHHH
Q 013850 209 GVILTHKNFIAA 220 (435)
Q Consensus 209 ~v~~t~~~l~~~ 220 (435)
|+.+....+...
T Consensus 215 G~~~~~~~~~~~ 226 (393)
T 2huf_A 215 TPVSFSHRAVER 226 (393)
T ss_dssp EEEEECHHHHHH
T ss_pred EEEEECHHHHHH
Confidence 566666766554
No 199
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=20.52 E-value=4.1e+02 Score=23.74 Aligned_cols=55 Identities=15% Similarity=0.050 Sum_probs=34.2
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecCC-----CCCHHHHHHHHHhc---CCe-EEEEc
Q 013850 76 ITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANP-----VYTVSELSKQVKDS---NPK-LVITV 133 (435)
Q Consensus 76 ~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~-----~~~~~~~~~~l~~~---~~~-~vi~~ 133 (435)
+++||.|++..|.-..+. .++...|+.+++++. ..+.+.++..++.. +.+ +++++
T Consensus 123 ~~~gd~Vl~~~p~~~~~~---~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~~~~~vi~~ 186 (418)
T 3rq1_A 123 TEPGDEVLTADWYWGAYR---VICSDTGRTLVTYSLFDEHNNFNHEAFQNRVNELAAKQTNVVVIFN 186 (418)
T ss_dssp SCTTCEEEEESSCCTHHH---HHHHHTTCEEEEECSBCTTSSBCHHHHHHHHHHHHHHCSEEEEEEE
T ss_pred cCCCCEEEECCCCchhHH---HHHHHcCCEEEEEeeeCCCCCcCHHHHHHHHHHhhccCCCEEEEEe
Confidence 478998887766443332 345677877666653 34677888877753 555 44443
No 200
>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}
Probab=20.51 E-value=2e+02 Score=25.39 Aligned_cols=41 Identities=17% Similarity=0.373 Sum_probs=31.2
Q ss_pred HHHHHHHHHhCCCCCCCEEEEEcCCCC-cHHHHHHHHHHcCc
Q 013850 64 VIKVSHSFRHLGITKKDVVLIFAPNSI-HFPICFLGVIAIGA 104 (435)
Q Consensus 64 ~~~la~~L~~~g~~~gd~V~l~~~~~~-~~~~~~lA~~~~G~ 104 (435)
.++++..|.++||.+++.|+|+-.... ...-+++-+-..|.
T Consensus 98 ~~~f~~~l~~lGI~~d~~VVvYD~~~~~~AaR~wW~Lr~~Gh 139 (327)
T 3utn_X 98 KKVFDDAMSNLGVQKDDILVVYDRVGNFSSPRCAWTLGVMGH 139 (327)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEECSSSSSSHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHHcCC
Confidence 578999999999999999999977653 34445555666675
No 201
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on Pro structural and functional analyses; 2.10A {Pyrococcus horikoshii}
Probab=20.43 E-value=2e+02 Score=24.16 Aligned_cols=70 Identities=6% Similarity=-0.057 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcC----cEEEecCCCCC--HHHHHHHHHhcCCeEEEEcc
Q 013850 62 SIVIKVSHSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIG----AIASTANPVYT--VSELSKQVKDSNPKLVITVP 134 (435)
Q Consensus 62 ~~~~~la~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G----~~~v~i~~~~~--~~~~~~~l~~~~~~~vi~~~ 134 (435)
+..+++..+|++. .+++|++.+.-+.+..++..-+.+++ ...+.++...+ .+....+.+..+++..+.+-
T Consensus 8 ~~~~~l~~~i~~~---~~~~vvv~lSGGiDSs~~~~l~~~~~g~~~v~av~~~~~~~~~~~~a~~~a~~lgi~~~~i~i 83 (257)
T 2e18_A 8 KVIERILEFIREK---GNNGVVIGISGGVDSATVAYLATKALGKEKVLGLIMPYFENKDVEDAKLVAEKLGIGYKVINI 83 (257)
T ss_dssp HHHHHHHHHHHHH---CTTCEEEECCSSHHHHHHHHHHHHHHCGGGEEEEECCSSCSTHHHHHHHHHHHHTCEEEECCC
T ss_pred HHHHHHHHHHHHh---CCCcEEEEecCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCchHHHHHHHHHHHhCCCEEEEEC
Confidence 3345566666665 35679999999999887766666653 34455554433 33345666777877776653
No 202
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=20.38 E-value=1.5e+02 Score=22.23 Aligned_cols=50 Identities=12% Similarity=0.074 Sum_probs=31.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCeE
Q 013850 79 KDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKL 129 (435)
Q Consensus 79 gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~ 129 (435)
=|.|.++.| .....-++..|..+|.-.+.+.+....+++....++.+.++
T Consensus 70 vDlvii~vp-~~~v~~v~~~~~~~g~~~i~~~~~~~~~~l~~~a~~~Gi~~ 119 (138)
T 1y81_A 70 VDVIVFVVP-PKVGLQVAKEAVEAGFKKLWFQPGAESEEIRRFLEKAGVEY 119 (138)
T ss_dssp CCEEEECSC-HHHHHHHHHHHHHTTCCEEEECTTSCCHHHHHHHHHHTCEE
T ss_pred CCEEEEEeC-HHHHHHHHHHHHHcCCCEEEEcCccHHHHHHHHHHHCCCEE
Confidence 466666666 34444445566677765555566555667777777777663
No 203
>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*
Probab=20.37 E-value=2.1e+02 Score=25.56 Aligned_cols=61 Identities=10% Similarity=0.152 Sum_probs=39.0
Q ss_pred HHHhCCCC-CCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCeEEEEc
Q 013850 70 SFRHLGIT-KKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLVITV 133 (435)
Q Consensus 70 ~L~~~g~~-~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~vi~~ 133 (435)
.|.+.+++ +|++|+|...-.+-..++.+|- ..|+.++.+.. +.+.+....++.+++.++..
T Consensus 178 al~~~~~~~~g~~VlV~GaG~vG~~~~q~a~-~~Ga~Vi~~~~--~~~~~~~~~~~lGa~~v~~~ 239 (366)
T 1yqd_A 178 PLKYFGLDEPGKHIGIVGLGGLGHVAVKFAK-AFGSKVTVIST--SPSKKEEALKNFGADSFLVS 239 (366)
T ss_dssp HHHHTTCCCTTCEEEEECCSHHHHHHHHHHH-HTTCEEEEEES--CGGGHHHHHHTSCCSEEEET
T ss_pred HHHhcCcCCCCCEEEEECCCHHHHHHHHHHH-HCCCEEEEEeC--CHHHHHHHHHhcCCceEEec
Confidence 35566888 9999999986445555555554 56886554433 33445555557788776643
No 204
>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1
Probab=20.26 E-value=2e+02 Score=25.92 Aligned_cols=56 Identities=11% Similarity=0.160 Sum_probs=35.1
Q ss_pred HHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCc-EEEecCCCCCHHHHHHHHHhcCCeEE
Q 013850 71 FRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGA-IASTANPVYTVSELSKQVKDSNPKLV 130 (435)
Q Consensus 71 L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~-~~v~i~~~~~~~~~~~~l~~~~~~~v 130 (435)
|...++++|++|+|...-.+-.+++.+|- ..|+ .++.+.. +.+.+ ..+++.+++++
T Consensus 178 l~~~~~~~g~~VlV~GaG~vG~~aiqlAk-~~Ga~~Vi~~~~--~~~~~-~~a~~lGa~~i 234 (398)
T 1kol_A 178 AVTAGVGPGSTVYVAGAGPVGLAAAASAR-LLGAAVVIVGDL--NPARL-AHAKAQGFEIA 234 (398)
T ss_dssp HHHTTCCTTCEEEEECCSHHHHHHHHHHH-HTTCSEEEEEES--CHHHH-HHHHHTTCEEE
T ss_pred HHHcCCCCCCEEEEECCcHHHHHHHHHHH-HCCCCeEEEEcC--CHHHH-HHHHHcCCcEE
Confidence 44568999999999885445555555554 4687 4444432 33333 45577888743
No 205
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=20.22 E-value=3.1e+02 Score=24.53 Aligned_cols=59 Identities=12% Similarity=-0.007 Sum_probs=31.0
Q ss_pred CCCCCEEEEEcCCCCcHHHHH--HHHHHcCcEEEecCC----CCCHHHHHHHHHhcCCeEEEEcc
Q 013850 76 ITKKDVVLIFAPNSIHFPICF--LGVIAIGAIASTANP----VYTVSELSKQVKDSNPKLVITVP 134 (435)
Q Consensus 76 ~~~gd~V~l~~~~~~~~~~~~--lA~~~~G~~~v~i~~----~~~~~~~~~~l~~~~~~~vi~~~ 134 (435)
+++||.|++..+......... +.....+..+++++. ..+.+.++..++..++++|++..
T Consensus 108 ~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~ 172 (417)
T 3n0l_A 108 INPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDYEKVREIAKKEKPKLIVCGA 172 (417)
T ss_dssp SCTTCEEEEECC----------------CCSEEEEECCCTTSSCCHHHHHHHHHHHCCSEEEECC
T ss_pred cCCCCEEEecccccccccchhhhhhhhcceeeeEeccCCCCCCcCHHHHHHHHHhcCCeEEEECC
Confidence 578998888776543322211 122223444554432 24678888888867888888764
No 206
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1
Probab=20.09 E-value=2e+02 Score=25.44 Aligned_cols=74 Identities=18% Similarity=0.267 Sum_probs=43.6
Q ss_pred ceeHHHHHHHHHHHH---HHHHhCCCCCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCeEE
Q 013850 54 SLSFSQFKSIVIKVS---HSFRHLGITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQVKDSNPKLV 130 (435)
Q Consensus 54 ~~Ty~el~~~~~~la---~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~l~~~~~~~v 130 (435)
.+++.+..- ..-++ +.|...++++|++|+|...-.+-..++.+|- ..|+.++.+.. +.+.+ ..+++.+++.+
T Consensus 142 ~~~~~~aa~-~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~Vi~~~~--~~~~~-~~~~~lGa~~~ 216 (352)
T 1e3j_A 142 NVSLEEGAL-LEPLSVGVHACRRAGVQLGTTVLVIGAGPIGLVSVLAAK-AYGAFVVCTAR--SPRRL-EVAKNCGADVT 216 (352)
T ss_dssp TSCHHHHHT-HHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHH-HTTCEEEEEES--CHHHH-HHHHHTTCSEE
T ss_pred CCCHHHHHh-hchHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCEEEEEcC--CHHHH-HHHHHhCCCEE
Confidence 467766432 12222 3344558999999999986445566555554 56886444432 33333 34567788766
Q ss_pred EE
Q 013850 131 IT 132 (435)
Q Consensus 131 i~ 132 (435)
+.
T Consensus 217 ~~ 218 (352)
T 1e3j_A 217 LV 218 (352)
T ss_dssp EE
T ss_pred Ec
Confidence 64
No 207
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=20.05 E-value=3.4e+02 Score=23.98 Aligned_cols=53 Identities=17% Similarity=0.164 Sum_probs=27.4
Q ss_pred CCCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecCCC------CCHHHHHHHHHhcCCeEEEE
Q 013850 76 ITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPV------YTVSELSKQVKDSNPKLVIT 132 (435)
Q Consensus 76 ~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~------~~~~~~~~~l~~~~~~~vi~ 132 (435)
+++||.|++..+....+ ..++...|+.++.++.. .+.+.++..++. ++++|+.
T Consensus 111 ~~~gd~vl~~~~~~~~~---~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~v~~ 169 (388)
T 1j32_A 111 IEPGDEVIIPAPFWVSY---PEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITP-KTKLLVF 169 (388)
T ss_dssp CCTTCEEEEESSCCTHH---HHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCCT-TEEEEEE
T ss_pred cCCCCEEEEcCCCChhH---HHHHHHcCCEEEEecCCcccCCCCCHHHHHHhcCc-CceEEEE
Confidence 45777776665543332 23344566655544432 345666665543 4555553
No 208
>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens} SCOP: c.79.1.1 PDB: 1m54_A*
Probab=20.03 E-value=3.2e+02 Score=25.27 Aligned_cols=88 Identities=14% Similarity=-0.036 Sum_probs=49.5
Q ss_pred eeeeecCCCcceeHHHHHHHHHHHHHHHHhCC-CCCCCEEEEEcCCCCcHHHHHHHHHHcCcEEEecCCCCCHHHHHHHH
Q 013850 44 LALIDADSDESLSFSQFKSIVIKVSHSFRHLG-ITKKDVVLIFAPNSIHFPICFLGVIAIGAIASTANPVYTVSELSKQV 122 (435)
Q Consensus 44 ~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~g-~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~~~~~l 122 (435)
+.+-.++.+..=||++-... ..+...+ +.| +++|+.|+.. ..+-.-..+.+++.++|..++.+-|......-...+
T Consensus 127 v~lK~E~~nptGSfKdR~a~-~~i~~a~-~~G~l~~g~tVV~a-SsGN~G~AlA~aaa~~Gi~~~IvmP~~~s~~k~~~l 203 (435)
T 1jbq_A 127 LLAKCEFFNAGGSVKDRISL-RMIEDAE-RDGTLKPGDTIIEP-TSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVL 203 (435)
T ss_dssp EEEEEGGGSTTSBTHHHHHH-HHHHHHH-HHTCSCTTCEEEEE-CSSHHHHHHHHHHHHHTCEEEEEECSCCCHHHHHHH
T ss_pred EEEEECCCCCcCCHHHHHHH-HHHHHHH-HcCCCCCCCEEEEe-CCCHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHH
Confidence 33433332344455553222 2233333 335 4667755443 335555666777889998655544444444456678
Q ss_pred HhcCCeEEEEcc
Q 013850 123 KDSNPKLVITVP 134 (435)
Q Consensus 123 ~~~~~~~vi~~~ 134 (435)
+..++++++++.
T Consensus 204 ~~~GAeVv~v~~ 215 (435)
T 1jbq_A 204 RALGAEIVRTPT 215 (435)
T ss_dssp HHTTCEEEECCC
T ss_pred HhCCCEEEEecC
Confidence 899999999864
Done!