Query 013853
Match_columns 435
No_of_seqs 228 out of 1562
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 08:03:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013853.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013853hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01980 sufB FeS assembly pr 100.0 5.2E-79 1.1E-83 636.9 42.0 362 41-417 18-443 (448)
2 PRK10948 cysteine desulfurase 100.0 1.6E-78 3.4E-83 628.3 44.1 342 75-429 28-421 (424)
3 CHL00085 ycf24 putative ABC tr 100.0 1.4E-78 2.9E-83 638.6 42.5 374 40-429 33-482 (485)
4 PRK11814 cysteine desulfurase 100.0 1.5E-78 3.3E-83 637.9 42.7 372 41-428 33-482 (486)
5 TIGR01981 sufD FeS assembly pr 100.0 3.5E-73 7.6E-78 580.5 37.7 317 89-419 1-366 (366)
6 COG0719 SufB Cysteine desulfur 100.0 5.5E-66 1.2E-70 534.3 35.2 352 69-426 11-410 (412)
7 PF01458 UPF0051: Uncharacteri 100.0 8.3E-54 1.8E-58 411.4 31.2 201 201-402 29-229 (229)
8 PF01458 UPF0051: Uncharacteri 98.0 0.0029 6.3E-08 61.0 23.7 152 206-364 4-159 (229)
9 CHL00085 ycf24 putative ABC tr 97.6 0.016 3.4E-07 62.2 22.7 150 208-363 224-385 (485)
10 TIGR01981 sufD FeS assembly pr 97.5 0.018 4E-07 59.5 21.4 148 209-363 125-278 (366)
11 TIGR01980 sufB FeS assembly pr 97.5 0.021 4.5E-07 60.7 21.8 150 208-363 204-357 (448)
12 PRK10948 cysteine desulfurase 97.4 0.036 7.7E-07 58.6 22.3 145 211-361 174-321 (424)
13 PRK11814 cysteine desulfurase 97.4 0.035 7.6E-07 59.6 22.4 151 208-364 225-387 (486)
14 COG0719 SufB Cysteine desulfur 96.6 0.17 3.7E-06 53.3 18.7 145 210-360 165-312 (412)
15 PF00627 UBA: UBA/TS-N domain; 67.2 6 0.00013 26.9 2.6 26 376-401 1-26 (37)
16 PF01774 UreD: UreD urease acc 45.7 2.7E+02 0.0058 26.3 13.9 66 211-277 19-92 (209)
17 PF12247 MKT1_N: Temperature d 42.3 27 0.00059 29.0 3.1 34 373-406 8-41 (90)
18 COG0829 UreH Urease accessory 42.3 2.2E+02 0.0047 28.5 9.9 64 211-276 64-135 (269)
19 smart00165 UBA Ubiquitin assoc 27.0 95 0.0021 20.6 3.3 26 377-402 1-26 (37)
20 PF14076 DUF4258: Domain of un 25.3 80 0.0017 23.9 3.0 28 376-403 2-29 (73)
21 PF04256 DUF434: Protein of un 24.0 68 0.0015 24.6 2.3 25 379-403 8-32 (58)
22 PF08275 Toprim_N: DNA primase 23.9 62 0.0013 28.3 2.4 20 378-397 12-31 (128)
23 TIGR02111 PQQ_syn_pqqC coenzym 23.3 1.5E+02 0.0031 29.2 5.0 42 373-425 30-78 (239)
24 PF10410 DnaB_bind: DnaB-helic 22.5 2.5E+02 0.0053 20.4 5.2 46 383-429 8-54 (59)
25 cd00194 UBA Ubiquitin Associat 21.8 1.4E+02 0.0029 19.9 3.3 26 377-402 1-26 (38)
26 PRK07634 pyrroline-5-carboxyla 20.8 1.3E+02 0.0027 28.6 4.1 60 360-419 162-230 (245)
27 PF01774 UreD: UreD urease acc 20.1 5.3E+02 0.011 24.3 8.1 55 206-260 47-102 (209)
No 1
>TIGR01980 sufB FeS assembly protein SufB. This protein, SufB, forms a cytosolic complex SufBCD. This complex enhances the cysteine desulfurase of SufSE. The system, together with SufA, is believed to act in iron-sulfur cluster formation during oxidative stress. Note that SufC belongs to the family of ABC transporter ATP binding proteins, so this protein, encoded by an adjacent gene, has often been annotated as a transporter component.
Probab=100.00 E-value=5.2e-79 Score=636.89 Aligned_cols=362 Identities=20% Similarity=0.246 Sum_probs=318.9
Q ss_pred ccCCCcHHHHHHHHHHhhcCCCCCCCCCCChhHHHHHHHHHHHhHcCCCCC--CCCCCCCCcchhhhhhcCCC--CC--C
Q 013853 41 QATFSDPFVIQLAESLEDSLPSSSSSLPQPLPLQKLRDSSSQTLLSTPWPS--RKDEPFRFTDTSMIKSSQIQ--PI--T 114 (435)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~R~~A~~~~~~~g~P~--~k~E~wkyT~l~~l~~~~~~--p~--~ 114 (435)
+..++...+..+.+.+. +|.||.++|++|++.|.+++||+ +|.|+|+|||++.+....+. +. .
T Consensus 18 ~~~~~~~~~~~~s~~~~-----------ep~wl~~~R~~A~~~~~~l~~P~~~~~~e~w~~t~l~~~~~~~~~~~~~~~~ 86 (448)
T TIGR01980 18 EKGLTEEVVEEISEKKG-----------EPDWMLDFRLRALELFEKMPMPTWGPDLSGIDYEDIVYYSKPDKKKATSWDE 86 (448)
T ss_pred CCCCCHHHHHHHHhhcC-----------CCHHHHHHHHHHHHHHhhCCCCCCCCCCCCcCccccEEeecccccccCChhh
Confidence 34445555666665533 89999999999999999999999 99999999999977654331 11 1
Q ss_pred CCCC------CCCCC-----CCCCcceEEEECCEEcccccCCCCCCCCeEEEecccCc---hhHHHHhhccccccccCch
Q 013853 115 RPSS------SLDVS-----TDAQFPSLVLIDGFIQNSALNLSNLPDGVYVGSLLGVS---DGIMKRVSDFISEFQCGDL 180 (435)
Q Consensus 115 ~~~~------~~~~~-----~~~~~~~lvfvnG~~~~~ls~~~~lp~Gv~v~~l~~a~---~~~~~~~~~~~~~~~~~d~ 180 (435)
.+.. ..+++ ..... .++|+||.+...+++... ++||++++|++|. ++++++|++..... .+|+
T Consensus 87 ~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~ls~~l~-~~GV~~~~l~~a~~~~~~~v~~~l~~~~~~-~~~~ 163 (448)
T TIGR01980 87 VPDEIKDTFEKLGIPEAERKALAGV-GAQYDSEVIYHNIKEDLE-EKGVIFCDMDTALKEYPDLVKEYFMSVVPP-SDNK 163 (448)
T ss_pred CCHHHHHHHHHcCCChHHhhhcCce-EEEEcCEEEEEcchhHHh-cCCEEEecHHHHHHhCHHHHHHHHhccCCC-cccH
Confidence 1111 01122 12233 599999999998886432 8899999999885 57899999884443 3789
Q ss_pred HHHhhhccCCCceEEEecC-------------------------------------------C-CCcceeeeeEEEEEEc
Q 013853 181 FWSINGMGAPDLGVIYVPA-------------------------------------------E-GNDCYWANSVLEVVIG 216 (435)
Q Consensus 181 f~aLN~a~~~dg~~i~Vp~-------------------------------------------~-~~~~~~~n~v~ei~v~ 216 (435)
|++||+|++++|+|||||+ . ++..+++|+++||+++
T Consensus 164 f~aLn~A~~~~G~~i~Vp~g~~~~~Pi~~~~~~~~~~~~~~~r~lIi~ee~s~~~iie~~~s~~~~~~~~~~~v~Ei~v~ 243 (448)
T TIGR01980 164 FAALNGAVWSGGSFVYVPKGVRVDMPLQTYFRINSENTGQFEHTLIIADEGASVHYIEGCSAPIYSTNSLHAAVVELIVK 243 (448)
T ss_pred HHhHhhcccCceEEEEECCCCEeCCCEEEEEEEcCCccceeeeEEEEECCCCEEEEEEeccccCCCccceEEEEEEEEEc
Confidence 9999999999999999999 0 2345799999999999
Q ss_pred CCCEEEEEEEEecCCCcEEEEeEEEEEecCcEEEEEEEEeCCeEEEEEeEEEEeCCCcEEEEEEEEEecCCceEeeeeEE
Q 013853 217 KGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTGGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRL 296 (435)
Q Consensus 217 ~~A~l~~~~iq~~~~~~~~~~~~~v~~~~~s~~~~~~i~~Gg~~~r~~~~~~l~G~~a~~~~~g~~l~~~~q~~D~~t~i 296 (435)
+||+|+|++||+|+.+++|+.++++.++++|+|+|+.+.+|+.++|+++.+.|.|++|.++++|++++.++|++|+++.|
T Consensus 244 ~~A~v~~~~iq~~~~~~~~~~~~~~~~~~~a~~~~~~~~lG~~~s~~~~~~~L~G~~a~~~~~~~~l~~~~q~~D~~t~v 323 (448)
T TIGR01980 244 EDARVRYSTVQNWSKNVYNLVTKRALVEENGTMEWVSGSIGSKITMKYPSSILKGEGAKTEFLSIAFAGKGQHLDTGAKM 323 (448)
T ss_pred CCCEEEEEEEeecCCCeEEEEEEEEEEcCCCEEEEEEEEecCceEEEeceEEEEcCCcEEEEEEEEecCCCEEEEcceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCcceeeEEEEEEEecCCceEEEEEEEEEccCCccCceEEEeceEEeCCCceeeeeeeEEEEcCCeeeeeeeeccCC
Q 013853 297 LLDHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNRYAQQTDAGQLTRSLLLEPRATVNVKPNLQIIADDVKCSHGAAISDL 376 (435)
Q Consensus 297 ~h~~p~t~S~~~~k~Il~~d~s~~vf~G~I~V~~~Aq~t~a~q~~~~LLLs~~A~~~s~P~LeI~adDVkcsHgATvG~i 376 (435)
.|.+|+|+|++++|||+. |+|++||+|+|+|.++|++|+|+|.|++||||++|+++|+|+|||++|||+|+||||||+|
T Consensus 324 ~h~~p~t~s~~~~k~v~~-d~s~~vf~G~i~v~~~A~~t~a~q~~~~LlLs~~a~~~t~P~LeI~~dDV~~sHgAtvG~i 402 (448)
T TIGR01980 324 IHLAPNTSSTIISKSISK-GGGKSTYRGLVKIGPGAKGAKSHVQCDSLLIDDESASDTIPYIEIFNDTVDVEHEATVSKI 402 (448)
T ss_pred EEeCCCcEEEEEEEEEEC-CCcEEEEEEEEEECCCCCCCccEEEEeEEEECCCcceEecceEEEecCCeEEEeeeeccCC
Confidence 999999999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHhcCCCHHHHHHHHHHhhHHHHHhcCCChhHHH
Q 013853 377 EESQLFYFQARGIDLETARKALVFSFGAEVIERFPYPSIRN 417 (435)
Q Consensus 377 DeeqLFYL~SRGI~e~eA~~LLi~gFl~evi~~ip~e~lr~ 417 (435)
|+|||||||||||++++|++|||+||+.+|+++||.|...+
T Consensus 403 deeqLFYL~SRGi~~~eA~~Lii~gF~~evi~~ip~e~~~e 443 (448)
T TIGR01980 403 SEEQLFYLMSRGLSEEDARAMIVRGFVEPITKELPMEYAVE 443 (448)
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHHhHHHHHHhCChHHHHH
Confidence 99999999999999999999999999999999999765543
No 2
>PRK10948 cysteine desulfurase activator complex subunit SufD; Provisional
Probab=100.00 E-value=1.6e-78 Score=628.35 Aligned_cols=342 Identities=25% Similarity=0.351 Sum_probs=304.6
Q ss_pred HHHHHHHHHhHcCCCCCCCCCCCCCcchhhhhhcCCC-CCCCCCC---CCCCC-CCCCcceEEEECCEEcccccCCCCCC
Q 013853 75 KLRDSSSQTLLSTPWPSRKDEPFRFTDTSMIKSSQIQ-PITRPSS---SLDVS-TDAQFPSLVLIDGFIQNSALNLSNLP 149 (435)
Q Consensus 75 ~~R~~A~~~~~~~g~P~~k~E~wkyT~l~~l~~~~~~-p~~~~~~---~~~~~-~~~~~~~lvfvnG~~~~~ls~~~~lp 149 (435)
++|++||+.|.++|||++|+|+||||||+.+....+. +...... ...++ ..+.+ ++||+||.|.+.+|+. .+|
T Consensus 28 ~~r~~a~~~~~~~glPt~k~E~WkyT~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~lvfvnG~~~~~ls~~-~~~ 105 (424)
T PRK10948 28 PQARQHWQQVLRLGLPTRKHEDWKYTPLEGLLNSQFVFSIAAEISPAQRDALALTIDAV-RLVFVDGRFSPALSDS-TEG 105 (424)
T ss_pred HHHHHHHHHHHhCCCCCCCCcCcCCCCHHHHhccccccccccccChhhhhhccccCCce-EEEEECCEEchhhCcc-cCC
Confidence 9999999999999999999999999999999876543 2111111 11122 22333 5999999999999984 333
Q ss_pred CCeEEEecccCchhHHHHhhccccccccCchHHHhhhccCCCceEEEecC---------------C--------------
Q 013853 150 DGVYVGSLLGVSDGIMKRVSDFISEFQCGDLFWSINGMGAPDLGVIYVPA---------------E-------------- 200 (435)
Q Consensus 150 ~Gv~v~~l~~a~~~~~~~~~~~~~~~~~~d~f~aLN~a~~~dg~~i~Vp~---------------~-------------- 200 (435)
+ |.++++. +... +... . ..|+|++||+|++++|++||||+ .
T Consensus 106 ~-v~v~~~~-a~~~-----~~~~--~-~~d~f~aLN~A~~~~g~~i~v~~~~~~~~Pi~i~~~~~~~~~~~~~~~~~r~l 175 (424)
T PRK10948 106 P-YQVSIND-DRQG-----LPAA--I-QPEVFLHLTESLAQSVTHIRLPRGQRPAKPLYLLHITQGVAGEELNTAHYRHH 175 (424)
T ss_pred C-eEEEEch-hhhh-----cccc--c-cccHHHHHHHhhCcCCEEEEECCCCccccCEEEEEEecCCCccccccccceEE
Confidence 4 8888855 3222 1111 1 24799999999999999999999 0
Q ss_pred ------------------CCcceeeeeEEEEEEcCCCEEEEEEEEecCCCcEEEEeEEEEEecCcEEEEEEEEeCCeEEE
Q 013853 201 ------------------GNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTGGKLSR 262 (435)
Q Consensus 201 ------------------~~~~~~~n~v~ei~v~~~A~l~~~~iq~~~~~~~~~~~~~v~~~~~s~~~~~~i~~Gg~~~r 262 (435)
++..+|+|.++||++++||+|+|+.+|.++.+++|+.+.++.++++|+|+|..+.+||+++|
T Consensus 176 I~~e~~a~~tiie~~~s~~~~~~~~n~v~ei~~~~~A~l~~~~lq~~~~~~~~~~~~~~~~~~~s~~~~~~~~~G~~~~r 255 (424)
T PRK10948 176 LDLAEGAEATVIEHFVSLNEARHFTGARLTMNVADNAHLNHIKLAFENPSSYHFAHNDLLLGRDARAFSHSFLLGAAVLR 255 (424)
T ss_pred EEECCCCEEEEEEEeecCCCCceeEeeeEEEEECCCCEEEEEEEEccCCCcEEEEEeEEEEcCCCEEEEEEEEeCCceEE
Confidence 11235889999999999999999999999999999999999999999999999999999999
Q ss_pred EEeEEEEeCCCcEEEEEEEEEecCCceEeeeeEEEEecCcceeeEEEEEEEecCCceEEEEEEEEEccCCccCceEEEec
Q 013853 263 HNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNRYAQQTDAGQLTR 342 (435)
Q Consensus 263 ~~~~~~l~G~~a~~~~~g~~l~~~~q~~D~~t~i~h~~p~t~S~~~~k~Il~~d~s~~vf~G~I~V~~~Aq~t~a~q~~~ 342 (435)
+++.+.|.|++|+++++|++++.++|++|+++.|.|.+|+|+|++++|||+. |+|++||+|+|+|.++||+|+|+|.|+
T Consensus 256 ~~~~~~L~G~~a~~~~~g~~l~~~~q~~D~~~~i~H~~p~t~S~~~~kgvl~-d~s~~vF~G~i~V~~~A~~t~a~q~~~ 334 (424)
T PRK10948 256 HNTSTQLNGENSTLRLNSLAMPVKNEVCDTRTWLEHNKGYCNSRQLHKTIVS-DKGRAVFNGLIKVAQHAIKTDGQMTNN 334 (424)
T ss_pred EeeeEEEECCCcEEEEEEEEEcCCCEEEEccEEEEEcCCCcEEEEEEEEEEc-CCCEEEEEEEEEEecCCcCcccEEeec
Confidence 9999999999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred eEEeCCCceeeeeeeEEEEcCCeeeeeeeeccCCChhhHHHHHhcCCCHHHHHHHHHHhhHHHHHhcCCChhHHHHHHHH
Q 013853 343 SLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEESQLFYFQARGIDLETARKALVFSFGAEVIERFPYPSIRNQVVSH 422 (435)
Q Consensus 343 ~LLLs~~A~~~s~P~LeI~adDVkcsHgATvG~iDeeqLFYL~SRGI~e~eA~~LLi~gFl~evi~~ip~e~lr~~l~~~ 422 (435)
+||||++|+++|+|+|||++|||+|+||||||+||+|||||||||||++++|++|||.||+.|++++||++.+|+++.+.
T Consensus 335 ~LLLs~~A~~~t~P~LeI~adDV~~sHgATvG~ldee~LFYL~SRGi~~~~A~~Llv~gF~~evl~~i~~~~lr~~l~~~ 414 (424)
T PRK10948 335 NLLLGKLAEVDTKPQLEIYADDVKCSHGATVGRIDDEQLFYLRSRGINQQDAQQMIIYAFAAELTEAIRDEALKQQVLAR 414 (424)
T ss_pred EEEECCCcceEecceEEEecCCeeEEeeeecCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcc
Q 013853 423 VKNLMGT 429 (435)
Q Consensus 423 i~~~l~~ 429 (435)
|++||.+
T Consensus 415 i~~~l~~ 421 (424)
T PRK10948 415 IGQRLPG 421 (424)
T ss_pred HHHHHhc
Confidence 9999965
No 3
>CHL00085 ycf24 putative ABC transporter
Probab=100.00 E-value=1.4e-78 Score=638.57 Aligned_cols=374 Identities=19% Similarity=0.211 Sum_probs=323.4
Q ss_pred cccCCCcHHHHHHHHHHhhcCCCCCCCCCCChhHHHHHHHHHHHhHcCCCCC---CCCCCCCCcchhhhhhcCCC---CC
Q 013853 40 PQATFSDPFVIQLAESLEDSLPSSSSSLPQPLPLQKLRDSSSQTLLSTPWPS---RKDEPFRFTDTSMIKSSQIQ---PI 113 (435)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~R~~A~~~~~~~g~P~---~k~E~wkyT~l~~l~~~~~~---p~ 113 (435)
....++...+.++.+.+. +|.||.++|++|++.|.+++||+ +|.|+|+|||++.+..+... +.
T Consensus 33 ~~~gl~~~~~~~~s~~~~-----------ep~Wl~~~R~~A~~~~~~~~~P~~~~~~~e~w~~t~i~~y~~~~~~~~~~~ 101 (485)
T CHL00085 33 LPKGLNEDIVRLISKKKN-----------EPIFLLIFRLKAYKKWKKMKEPDWAFLKYPEIDYQDISYYSAPKLKKKLNS 101 (485)
T ss_pred ccCCCCHHHHHHHHhhhC-----------CcHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCchhceeeeccccccccCC
Confidence 345555556666665543 89999999999999999999999 89999999999842221111 10
Q ss_pred --CCCCC------CCCCCC-------CCCcceEEEECCEEcccccCCCCCCCCeEEEecccCc---hhHHHHhhcccccc
Q 013853 114 --TRPSS------SLDVST-------DAQFPSLVLIDGFIQNSALNLSNLPDGVYVGSLLGVS---DGIMKRVSDFISEF 175 (435)
Q Consensus 114 --~~~~~------~~~~~~-------~~~~~~lvfvnG~~~~~ls~~~~lp~Gv~v~~l~~a~---~~~~~~~~~~~~~~ 175 (435)
..+.. ..+++. .... .++|++|.+.+.++.... ++||++++|++|. ++++++|++.....
T Consensus 102 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~v~~~~~~~~~l~~~l~-~~Gv~~~~l~~a~~~~~~lv~~yl~~~~~~ 179 (485)
T CHL00085 102 LDEVDPELLDTFEKLGISLNEQKRLANVAV-DAVFDSVSIGTTFKEELA-KAGVIFCSISEAIQKYPELIKKYLGSVVPI 179 (485)
T ss_pred hhhCCHHHHHHHHhcCCCHHHHhhhcCCce-EEEEccEEEEeeccchhh-cCCeEEEcHHHHHhhhHHHHHHHhcccCCC
Confidence 00110 012221 1122 489999999998886432 8899999999986 56789999885443
Q ss_pred ccCchHHHhhhccCCCceEEEecC-------------------------------------------C-CCcceeeeeEE
Q 013853 176 QCGDLFWSINGMGAPDLGVIYVPA-------------------------------------------E-GNDCYWANSVL 211 (435)
Q Consensus 176 ~~~d~f~aLN~a~~~dg~~i~Vp~-------------------------------------------~-~~~~~~~n~v~ 211 (435)
. +++|++||+|++++|+|||||+ . +++.++||+|+
T Consensus 180 ~-~~~f~aLn~A~~~~G~fi~Vp~gv~~~~pl~~~~~~~~~~~~~~~r~lIi~eega~~~iiE~~~s~~~~~~~~~~~v~ 258 (485)
T CHL00085 180 G-DNYFAALNSAVFSDGSFCYIPKDTKCPLELSTYFRINNEESGQFERTLIIAEENSYVSYLEGCTAPQYDTNQLHAAVV 258 (485)
T ss_pred C-chHHHHHHHHHcCCeEEEEECCCCcceEEEEEEEeecCCccceeeeEEEEECCCCEEEEEEEeccCCCCccceEEEEE
Confidence 3 7899999999999999999999 0 23457999999
Q ss_pred EEEEcCCCEEEEEEEEecC-------CCcEEEEeEEEEE-ecCcEEEEEEEEeCCeEEEEEeEEEEeCCCcEEEEEEEEE
Q 013853 212 EVVIGKGGKVRHSYLQNQS-------LNAAHIKWTAVRQ-ETASGYELVEVSTGGKLSRHNVHVQQLGPDTETELSSFHL 283 (435)
Q Consensus 212 ei~v~~~A~l~~~~iq~~~-------~~~~~~~~~~v~~-~~~s~~~~~~i~~Gg~~~r~~~~~~l~G~~a~~~~~g~~l 283 (435)
||++++||+|+|++||+|+ .+++++...++.+ +++|+++|..+.+||+++|+++.+.|.|+||.++++|+++
T Consensus 259 Ei~v~~~A~l~~~~iq~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~G~~~~r~~~~~~L~G~~a~~~~~~i~l 338 (485)
T CHL00085 259 ELIALENAEIKYSTVQNWYAGDENGEGGIYNFVTKRGLCAGKNSKISWTQVETGSAITWKYPSCILIGDNSQGEFYSVAL 338 (485)
T ss_pred EEEECCCCEEEEEEEEeecCccccccCceeeeeeeEEEEEcCCcEEEEEEEEecCceEEeeceEEEecCCcEEEEEEEEE
Confidence 9999999999999999996 6677877777766 8999999999999999999999999999999999999999
Q ss_pred ecCCceEeeeeEEEEecCcceeeEEEEEEEecCCceEEEEEEEEEccCCccCceEEEeceEEeCCCceeeeeeeEEEEcC
Q 013853 284 LVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNRYAQQTDAGQLTRSLLLEPRATVNVKPNLQIIAD 363 (435)
Q Consensus 284 ~~~~q~~D~~t~i~h~~p~t~S~~~~k~Il~~d~s~~vf~G~I~V~~~Aq~t~a~q~~~~LLLs~~A~~~s~P~LeI~ad 363 (435)
+.++|++|+++.|.|.+|+|+|++++|||+. |+|++||+|+|+|.++||+|+|+|+|++||||++|+++|+|+|||++|
T Consensus 339 ~~~~Q~~D~~t~v~h~~p~t~S~~~~k~Il~-d~s~~vF~G~i~V~~~A~~t~a~q~~~~LLLs~~a~~~t~P~LeI~ad 417 (485)
T CHL00085 339 TNNYQQADTGTKMIHIGKNTKSRIISKGISA-GKSKNSYRGLVKIGPKALNSRNYSQCDSLLIGNKSQANTFPYIQVQNS 417 (485)
T ss_pred ccCCEEEEeeEEEEEcCCCcEEEEEEEEEEC-CCCEEEEEEEEEECCCCCCCccceeeceEEEcCCCcEEecceEEEecC
Confidence 9999999999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred CeeeeeeeeccCCChhhHHHHHhcCCCHHHHHHHHHHhhHHHHHhcCCChhHHHHHHHHHHHhhcc
Q 013853 364 DVKCSHGAAISDLEESQLFYFQARGIDLETARKALVFSFGAEVIERFPYPSIRNQVVSHVKNLMGT 429 (435)
Q Consensus 364 DVkcsHgATvG~iDeeqLFYL~SRGI~e~eA~~LLi~gFl~evi~~ip~e~lr~~l~~~i~~~l~~ 429 (435)
||+|+||||||+||+|||||||||||++++|++|||.||+.+|+++||+| +++.|.+.|+.||..
T Consensus 418 DV~~sHgAtvG~ideeqLFYL~SRGi~e~eA~~Llv~gF~~evi~~ip~e-~~~~l~~~i~~~l~~ 482 (485)
T CHL00085 418 TAKIEHEASTSKIGEEQLFYFLQRGINLEEAISLLISGFCKDVFNKLPME-FALEADRLLSLKLEG 482 (485)
T ss_pred CeeEEEeeccCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCHH-HHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999998 777799999999863
No 4
>PRK11814 cysteine desulfurase activator complex subunit SufB; Provisional
Probab=100.00 E-value=1.5e-78 Score=637.92 Aligned_cols=372 Identities=17% Similarity=0.196 Sum_probs=325.8
Q ss_pred ccCCCcHHHHHHHHHHhhcCCCCCCCCCCChhHHHHHHHHHHHhHcCCCCC---CCCCCCCCcchhhhhhcCC---CCC-
Q 013853 41 QATFSDPFVIQLAESLEDSLPSSSSSLPQPLPLQKLRDSSSQTLLSTPWPS---RKDEPFRFTDTSMIKSSQI---QPI- 113 (435)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~R~~A~~~~~~~g~P~---~k~E~wkyT~l~~l~~~~~---~p~- 113 (435)
+..+....+.++.+... +|.||.++|++|++.|.+++||+ +|.|+|+|||+..+....+ .+.
T Consensus 33 ~~~l~~~~~~~~s~~~~-----------ep~Wl~~~R~~A~~~~~~l~~P~~~~~~~e~w~~t~~~~~~~~~~~~~~~~~ 101 (486)
T PRK11814 33 PKGLNEDVVRLISAKKN-----------EPEWMLEWRLKAYRHWLTMEEPHWAKVHYPPIDYQDISYYSAPKCKSKPKSL 101 (486)
T ss_pred ccCCCHHHHHHHHhhcC-----------CcHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCcccceeeeccccccccCCc
Confidence 44555555666665533 89999999999999999999999 8999999999987765433 111
Q ss_pred -CCCCC------CCCCC--CC-------CCcceEEEECCEEcccccCCCCCCCCeEEEecccCc---hhHHHHhhccccc
Q 013853 114 -TRPSS------SLDVS--TD-------AQFPSLVLIDGFIQNSALNLSNLPDGVYVGSLLGVS---DGIMKRVSDFISE 174 (435)
Q Consensus 114 -~~~~~------~~~~~--~~-------~~~~~lvfvnG~~~~~ls~~~~lp~Gv~v~~l~~a~---~~~~~~~~~~~~~ 174 (435)
..+.. ..+++ +. ... .++|++|.+.+.+++... ++||++++|++|. ++++++|+++...
T Consensus 102 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~v~~~~~~~~~ls~~l~-~~GV~~~~l~~a~~~~~~lv~~~l~~~~~ 179 (486)
T PRK11814 102 DEVDPELLETFEKLGIPLREQKRLAGREVAV-DAVFDSVSVATTFKEKLA-EAGVIFCSISEAIQEHPELVKKYLGSVVP 179 (486)
T ss_pred ccCCHHHHHHHHhcCCCHHHHhhhhccccce-EEEEcCeEEEeccCchhh-cCCeEEEcHHHHhhhhHHHHHHHhccCCC
Confidence 11111 01122 11 222 489999999998886432 8899999999886 5789999988444
Q ss_pred cccCchHHHhhhccCCCceEEEecC-------------------------------------------C-CCcceeeeeE
Q 013853 175 FQCGDLFWSINGMGAPDLGVIYVPA-------------------------------------------E-GNDCYWANSV 210 (435)
Q Consensus 175 ~~~~d~f~aLN~a~~~dg~~i~Vp~-------------------------------------------~-~~~~~~~n~v 210 (435)
. .+++|++||+|++++|+|||||+ . +++.++||++
T Consensus 180 ~-~~~~f~aLn~A~~~~G~fi~Vp~gv~~~~pi~~~~~~~~~~~~~~~r~lIi~ee~S~~~iiE~~~s~~~~~~~~~~~v 258 (486)
T PRK11814 180 V-NDNFFAALNSAVFSDGSFVYIPKGVRCPMELSTYFRINAANTGQFERTLIIADEGSYVSYLEGCTAPMRDENQLHAAV 258 (486)
T ss_pred C-CchHHHHHHHhhcCCeEEEEECCCCceeEEEEEEEeecCCCcceeeEEEEEECCCCEEEEEEEecCCCCCccceeeEE
Confidence 3 37899999999999999999999 0 2345799999
Q ss_pred EEEEEcCCCEEEEEEEEec-------CCCcEEEEeEEEE-EecCcEEEEEEEEeCCeEEEEEeEEEEeCCCcEEEEEEEE
Q 013853 211 LEVVIGKGGKVRHSYLQNQ-------SLNAAHIKWTAVR-QETASGYELVEVSTGGKLSRHNVHVQQLGPDTETELSSFH 282 (435)
Q Consensus 211 ~ei~v~~~A~l~~~~iq~~-------~~~~~~~~~~~v~-~~~~s~~~~~~i~~Gg~~~r~~~~~~l~G~~a~~~~~g~~ 282 (435)
+||++++||+|+|++||+| +.+++|+...++. ++++|+++|..+.+|+.++|+++.+.|.|+||.++++|++
T Consensus 259 ~Ei~v~~~A~l~~~~iq~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~lG~~~~r~~~~~~L~G~ga~~~~~gi~ 338 (486)
T PRK11814 259 VELVALDDAEIKYSTVQNWYPGDENGKGGIYNFVTKRGLCRGENSKISWTQVETGSAITWKYPSCILRGDNSVGEFYSVA 338 (486)
T ss_pred EEEEECCCCEEEEEEEEeecCccccCCCceEEEeeeEEEEecCCcEEEEEEEEcCCceEEeecceEEecCCcEEEEEeEE
Confidence 9999999999999999999 8889999988888 8999999999999999999999999999999999999999
Q ss_pred EecCCceEeeeeEEEEecCcceeeEEEEEEEecCCceEEEEEEEEEccCCccCceEEEeceEEeCCCceeeeeeeEEEEc
Q 013853 283 LLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNRYAQQTDAGQLTRSLLLEPRATVNVKPNLQIIA 362 (435)
Q Consensus 283 l~~~~q~~D~~t~i~h~~p~t~S~~~~k~Il~~d~s~~vf~G~I~V~~~Aq~t~a~q~~~~LLLs~~A~~~s~P~LeI~a 362 (435)
++.++|++|+++.|.|.+|+|+|++++|||+. |+|++||+|+|+|.++|++|+|+|.|++||||++|+++|+|+|||++
T Consensus 339 l~~~~q~~D~~t~v~H~~p~t~S~~~~k~V~~-d~s~~vF~G~i~V~~~A~~t~a~q~~~~LLLs~~A~~~t~P~LeI~a 417 (486)
T PRK11814 339 LTNGHQQADTGTKMIHIGKNTKSTIISKGISA-GHSQNTYRGLVKIMPKATNARNFTQCDSLLIGDQCGAHTFPYIEVKN 417 (486)
T ss_pred eccCCEEEEeeEEEEEcCCCcEEEEEEEEEEc-CCcEEEEEEEEEECCCCcCCccceeeeeEEecCCCceEecceEEEec
Confidence 99999999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred CCeeeeeeeeccCCChhhHHHHHhcCCCHHHHHHHHHHhhHHHHHhcCCChhHHHHHHHHHHHhhc
Q 013853 363 DDVKCSHGAAISDLEESQLFYFQARGIDLETARKALVFSFGAEVIERFPYPSIRNQVVSHVKNLMG 428 (435)
Q Consensus 363 dDVkcsHgATvG~iDeeqLFYL~SRGI~e~eA~~LLi~gFl~evi~~ip~e~lr~~l~~~i~~~l~ 428 (435)
|||+|+||||||+||+|||||||||||++++|++|||+||+.+|+++||+|.+++ +.+.|+..+.
T Consensus 418 dDV~~sHgATvG~ideeqLFYL~SRGi~e~eA~~Llv~gF~~evi~~ip~e~~~e-~~~~i~~~~~ 482 (486)
T PRK11814 418 NSAQVEHEATTSKISEDQLFYCRQRGISEEDAVSMIVNGFCKEVFQELPMEFAVE-AQKLLAISLE 482 (486)
T ss_pred CCeeEEeeeecCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHCCcHHHHH-HHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999998887 8788876654
No 5
>TIGR01981 sufD FeS assembly protein SufD, group 1. This protein, SufD, forms a cytosolic complex SufBCD. This complex enhances the cysteine desulfurase of SufSE. The system, together with SufA, is believed to act in iron-sulfur cluster formation during oxidative stress. SufB and SufD are homologous. Note that SufC belongs to the family of ABC transporter ATP binding proteins, so this protein, encoded by an adjacent gene, has often been annotated as a transporter component.
Probab=100.00 E-value=3.5e-73 Score=580.45 Aligned_cols=317 Identities=31% Similarity=0.448 Sum_probs=283.7
Q ss_pred CCCCCCCCCCCcchhhhhhcCCCCCC-CCCC--CCCCCCCCCcceEEEECCEEcccccCCCCCCCCeEEEecccCchhHH
Q 013853 89 WPSRKDEPFRFTDTSMIKSSQIQPIT-RPSS--SLDVSTDAQFPSLVLIDGFIQNSALNLSNLPDGVYVGSLLGVSDGIM 165 (435)
Q Consensus 89 ~P~~k~E~wkyT~l~~l~~~~~~p~~-~~~~--~~~~~~~~~~~~lvfvnG~~~~~ls~~~~lp~Gv~v~~l~~a~~~~~ 165 (435)
||++|+|+||||||+.+....+.+.. .+.. ....+..... ++||+||++.+.+++...++.|+.+..|.+..
T Consensus 1 ~P~~~~e~wkyt~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~lv~~~G~~~~~l~~~~~~~~~~~~~~l~~~~---- 75 (366)
T TIGR01981 1 LPPRRIEEWRYTDLENLLNESFQPRAAVPQEVQAAGLPLTKSP-RLVFVDGVIVPDLSDALPLHPELLEDLLDALA---- 75 (366)
T ss_pred CCCCcccCccCCCHHHhhhcccCcccCCCccccccccccCCce-eEEEECCEEecChhhhhccCcceEEeehhccc----
Confidence 69999999999999998887664321 1111 1122222333 59999999999998866677888877765421
Q ss_pred HHhhccccccccCchHHHhhhccCCCceEEEecCC---------------------------------------------
Q 013853 166 KRVSDFISEFQCGDLFWSINGMGAPDLGVIYVPAE--------------------------------------------- 200 (435)
Q Consensus 166 ~~~~~~~~~~~~~d~f~aLN~a~~~dg~~i~Vp~~--------------------------------------------- 200 (435)
.. ..+++|++||.|++.+|+|||||+.
T Consensus 76 -------~~-~~~~~~~aln~a~~~~G~~i~v~~~~~~~~Pi~i~~~~~~~~~~~~~~~~~i~v~~~s~~~iie~~~~~~ 147 (366)
T TIGR01981 76 -------VL-SDEDRFLALNAALFNDGTVLYVPKGVEVEEPIEIKFIGVGGEKNFVHPRLLIIVEKGSKITVIERFETIS 147 (366)
T ss_pred -------Cc-CCccHHHHHHHHHhCCeEEEEECCCCCcCCCEEEEEEEcCCCccceeeEEEEEECCCCEEEEEEEecCCC
Confidence 11 1368999999999999999999980
Q ss_pred -CCcceeeeeEEEEEEcCCCEEEEEEEEecCCCcEEEEeEEEEEecCcEEEEEEEEeCCeEEEEEeEEEEeCCCcEEEEE
Q 013853 201 -GNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTGGKLSRHNVHVQQLGPDTETELS 279 (435)
Q Consensus 201 -~~~~~~~n~v~ei~v~~~A~l~~~~iq~~~~~~~~~~~~~v~~~~~s~~~~~~i~~Gg~~~r~~~~~~l~G~~a~~~~~ 279 (435)
.++.+++|.++||++++||+|+|+.+|+|+.+++++..+++.++++|+|.+..+.+||+++|+++.+.|.|++|+++++
T Consensus 148 ~~~~~~~~~~~~ei~~~~~A~l~~~~iq~~~~~~~~~~~~~~~~~~~a~~~~~~~~~gg~~~r~~~~~~l~G~~a~~~~~ 227 (366)
T TIGR01981 148 LNSGKAFTNSVVEITVGANASVIFVKVQFFSKNSTHFSNHRAFIGRDATLRLAVVNLGGKLSRHNFDVDLEGEGSKLEVK 227 (366)
T ss_pred CCCcccEEEEEEEEEECCCCEEEEEEEEcCCCCcEEEEEeEEEEcCCCEEEEEEEEcCCccEEEeeeEEEEcCCcEEEEE
Confidence 0112589999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCceEeeeeEEEEecCcceeeEEEEEEEecCCceEEEEEEEEEccCCccCceEEEeceEEeCCCceeeeeeeEE
Q 013853 280 SFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNRYAQQTDAGQLTRSLLLEPRATVNVKPNLQ 359 (435)
Q Consensus 280 g~~l~~~~q~~D~~t~i~h~~p~t~S~~~~k~Il~~d~s~~vf~G~I~V~~~Aq~t~a~q~~~~LLLs~~A~~~s~P~Le 359 (435)
|++++.++|++|+++.+.|.+|+|+|++++|||+. |+|+++|+|+|+|.++||+|+|+|.|++||||++|+++|+|+||
T Consensus 228 g~~~~~~~q~~D~~~~i~h~~~~t~s~~~~kgvl~-d~s~~vf~G~i~I~~~A~~t~a~q~~~~LlLs~~A~~~t~P~Le 306 (366)
T TIGR01981 228 GLAFGAGSQHVDVRTNVVHNGPDTKSNILHRGILD-DRAHGVFRGIIHIPKGAKGTDAEQLNRNLLLSDDARADTKPILE 306 (366)
T ss_pred EEEECCCCEEeccCeEEEEcCCCcEEEEEEEEEEc-CCcEEEEEEEEEECCCcCcCccccEeeeEEECCCcccccCceEE
Confidence 99999999999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred EEcCCeeeeeeeeccCCChhhHHHHHhcCCCHHHHHHHHHHhhHHHHHhcCCChhHHHHH
Q 013853 360 IIADDVKCSHGAAISDLEESQLFYFQARGIDLETARKALVFSFGAEVIERFPYPSIRNQV 419 (435)
Q Consensus 360 I~adDVkcsHgATvG~iDeeqLFYL~SRGI~e~eA~~LLi~gFl~evi~~ip~e~lr~~l 419 (435)
|++|||+|+||||||+||+|||||||||||++++|++|||.||+.+++++||+|.||++|
T Consensus 307 I~adDV~~sHgATvG~ldee~LFYL~SRGi~~~eA~~llv~gF~~~vi~~i~~e~lr~~l 366 (366)
T TIGR01981 307 IDADDVKASHGATVGQIDDEQLFYLRSRGIDEEEARRLLIRGFLGEIIEEIPDESLKEEL 366 (366)
T ss_pred EecCCceEecceeecCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCHHhHhhC
Confidence 999999999999999999999999999999999999999999999999999999999864
No 6
>COG0719 SufB Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.5e-66 Score=534.33 Aligned_cols=352 Identities=25% Similarity=0.330 Sum_probs=304.0
Q ss_pred CChhHHHHHHHHHHHhHcCCCC---CCCCCCCCCcchhhhhhcCCCCCCCCCCCCCCCCCCCcceEEEECCEEcccccCC
Q 013853 69 QPLPLQKLRDSSSQTLLSTPWP---SRKDEPFRFTDTSMIKSSQIQPITRPSSSLDVSTDAQFPSLVLIDGFIQNSALNL 145 (435)
Q Consensus 69 ~p~~l~~~R~~A~~~~~~~g~P---~~k~E~wkyT~l~~l~~~~~~p~~~~~~~~~~~~~~~~~~lvfvnG~~~~~ls~~ 145 (435)
+|+|+.++|.++++.+..+++| .+|.+.|+||.+..+...... ..+...+.+++.+. .+++++..-.......
T Consensus 11 ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~e~--~~~~~~~~~~~~~~~~ 86 (412)
T COG0719 11 EPEWMLALRLKALRASPDLEMPEVPTRRDELWELDFLDRLYYLAPG--EASFKRLGIPDAEE--VLAQCDSVVVYHAVSG 86 (412)
T ss_pred CcHHHHHHHHHHHHHHhcccCCCCCcccccccCcChhHhhhccCCC--cccccccCCCchhc--cceeecceeehhhcch
Confidence 7899999999999999999988 366899999998887765432 11122233333222 1455554433222222
Q ss_pred CCCCCCeEEEecccCchhHHHHhhcc-ccccccCchHHHhhhccCCCceEEEecC-------------------------
Q 013853 146 SNLPDGVYVGSLLGVSDGIMKRVSDF-ISEFQCGDLFWSINGMGAPDLGVIYVPA------------------------- 199 (435)
Q Consensus 146 ~~lp~Gv~v~~l~~a~~~~~~~~~~~-~~~~~~~d~f~aLN~a~~~dg~~i~Vp~------------------------- 199 (435)
.-.|+||+++++-...+++.++|++. .... .+++|++||++++++|+|||||+
T Consensus 87 ~~~~~gv~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~aL~~a~~~~g~fiyVp~g~~~~~Pi~~~~~~~~~~~~~q~~~ 165 (412)
T COG0719 87 ELAPEGVIVEDILKEHPDLVKKYFGKGVVPD-DDDKFAALNAALFSDGTFIYVPKGVEVPTPIQLYFIINGENTGVQFER 165 (412)
T ss_pred hhhhCccEEeechhhhhHHHHHhCCCcccCC-CcceeeeeeeeEEcCcEEEEeCCCceeccceEEEEEecCCCccceeee
Confidence 23478999999944457888999977 4443 47999999999999999999999
Q ss_pred ----CC--------C-------cceeeeeEEEEEEcCCCEEEEEEEEecCCCcEEEEeEEEEEecCcEEEEEEEEeCCeE
Q 013853 200 ----EG--------N-------DCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTGGKL 260 (435)
Q Consensus 200 ----~~--------~-------~~~~~n~v~ei~v~~~A~l~~~~iq~~~~~~~~~~~~~v~~~~~s~~~~~~i~~Gg~~ 260 (435)
.+ + ...+|++++||++++||+|+|..||+|+....++....+..++++.++|+.+.+|+++
T Consensus 166 ~lIiveega~v~~ie~~~~p~~~~~~h~~vvei~v~~nA~v~~~~vqn~~~~~~~~~~~~~~~~~~a~~~~~~~~~G~~~ 245 (412)
T COG0719 166 TLIIVEEGAEITVIEGCSAPVGSGSLHNGVVEIFVGENASLTYTTVQNWSPVYNHLTKRAAVEEEDATVRWTQVTLGSKV 245 (412)
T ss_pred EEEEECCCCEEEEEccccCCCCCCcceeeEEEEEEcCCCEEEEEEecccccceeeeeeeeeeeccCcEEEEEEEecCCce
Confidence 00 1 1235899999999999999999999999988888888899999999999999999999
Q ss_pred EEEEeEEEEeCCCcEEEEEEEEEecCCceEeeeeEEEEecCcceeeEEEEEEEecCCceEEEEEEEEEccCCccCceEEE
Q 013853 261 SRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNRYAQQTDAGQL 340 (435)
Q Consensus 261 ~r~~~~~~l~G~~a~~~~~g~~l~~~~q~~D~~t~i~h~~p~t~S~~~~k~Il~~d~s~~vf~G~I~V~~~Aq~t~a~q~ 340 (435)
+|.+..+.|.|++|.+++.+++++.++|++|+++.|.|.||+|.|++++|||+. |+|+.+|||.|.|.++|++|+|+|+
T Consensus 246 t~~~~~~~l~Ge~a~~e~~sv~~~~~~q~~D~~~~v~h~g~~t~s~i~~kgI~~-d~a~~vfrG~i~i~~~A~~s~a~~~ 324 (412)
T COG0719 246 TRKYPSVRLKGEGADGELLSVAFAGGGQHMDVGTKMIHNGPNTRSNILSKGIVK-DGARTVFRGLIDIRKGATGSDAYQE 324 (412)
T ss_pred EEEeceEEEEcCCceEEEEEEEEccCCeEEcccceEEEecCCceeEEEEEEEEc-CCCEEEEEeEEEEecCCCCCchhee
Confidence 999999999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred eceEEeCCCceeeeeeeEEEEcCCeeeeeeeeccCCChhhHHHHHhcCCCHHHHHHHHHHhhHHHHHhcCCChhHHHHHH
Q 013853 341 TRSLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEESQLFYFQARGIDLETARKALVFSFGAEVIERFPYPSIRNQVV 420 (435)
Q Consensus 341 ~~~LLLs~~A~~~s~P~LeI~adDVkcsHgATvG~iDeeqLFYL~SRGI~e~eA~~LLi~gFl~evi~~ip~e~lr~~l~ 420 (435)
|++||||++|+++|+|.|||++|||+|+||||||+||+|||||||||||+++||++|||+||+.|++++||.+.++..+.
T Consensus 325 c~~LlLs~~a~~dt~P~LeI~~ddV~~~H~Atvg~ideeqLFYLmSRGl~e~eA~~lIV~GF~~~vi~~lp~~~v~~~~~ 404 (412)
T COG0719 325 CRTLLLSDDARADTVPILEIETDDVKAGHEATVGRIDEEQLFYLMSRGLSEEEAKRLIVRGFLEEVIEELPEEAVEEQLL 404 (412)
T ss_pred eceEEecCCcccccCceEEEecCCceEeeceeecccChHHEEehhhcCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988888777
Q ss_pred HHHHHh
Q 013853 421 SHVKNL 426 (435)
Q Consensus 421 ~~i~~~ 426 (435)
..++.+
T Consensus 405 ~~~~~~ 410 (412)
T COG0719 405 IFIELE 410 (412)
T ss_pred HHHhhc
Confidence 777654
No 7
>PF01458 UPF0051: Uncharacterized protein family (UPF0051); InterPro: IPR000825 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents SufB and SufD proteins that form part of the SufBCD complex in the SUF system. No specific functions have been assigned to these proteins.; GO: 0016226 iron-sulfur cluster assembly; PDB: 1VH4_B 2ZU0_A 4DN7_A.
Probab=100.00 E-value=8.3e-54 Score=411.41 Aligned_cols=201 Identities=32% Similarity=0.502 Sum_probs=178.2
Q ss_pred CCcceeeeeEEEEEEcCCCEEEEEEEEecCCCcEEEEeEEEEEecCcEEEEEEEEeCCeEEEEEeEEEEeCCCcEEEEEE
Q 013853 201 GNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTGGKLSRHNVHVQQLGPDTETELSS 280 (435)
Q Consensus 201 ~~~~~~~n~v~ei~v~~~A~l~~~~iq~~~~~~~~~~~~~v~~~~~s~~~~~~i~~Gg~~~r~~~~~~l~G~~a~~~~~g 280 (435)
....++++.+++|++++||+|+|+.+|+|+....++..+.+.++++|.++|..+.+|+.++|+++.+.|.|++|.+++++
T Consensus 29 ~~~~~~~~~~~~i~v~~~a~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~g~~~~~~~~~~~l~G~~s~~~~~~ 108 (229)
T PF01458_consen 29 SGESSLHNGVIEIYVGENARLKYVSVQNWGENSIHFSNTRVILGENASLNWVSVSLGGKMSRNRIEIELNGEGSSAELNG 108 (229)
T ss_dssp TSSEEEEEEEEEEEE-TT-EEEEEEEEE--TCEEEEEEEEEEE-TT-EEEEEEEES--SEEEEEEEEEE-STT-EEEEEE
T ss_pred CCCceEEEEEEEEEECCCcEEEEEEEecCCCcEEEEEEEEEEEcCceEEEEEEEEeCCeeEEEEEEEEEcCCCCEEEEEE
Confidence 45568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCceEeeeeEEEEecCcceeeEEEEEEEecCCceEEEEEEEEEccCCccCceEEEeceEEeCCCceeeeeeeEEE
Q 013853 281 FHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNRYAQQTDAGQLTRSLLLEPRATVNVKPNLQI 360 (435)
Q Consensus 281 ~~l~~~~q~~D~~t~i~h~~p~t~S~~~~k~Il~~d~s~~vf~G~I~V~~~Aq~t~a~q~~~~LLLs~~A~~~s~P~LeI 360 (435)
++++.++|++|+++.+.|.+|+|+|++++|||+. |+|+.+|+|+|+|.++|++|+++|.|++||||++|+++++|.|||
T Consensus 109 ~~~~~~~~~~d~~~~i~h~~~~t~s~~~~r~v~~-d~s~~vf~G~i~i~~~a~~s~~~q~~~~llls~~A~~~s~P~LeI 187 (229)
T PF01458_consen 109 VYLGSGDQRIDINTNIIHNGPNTTSNILSRGVLK-DKSKVVFRGRIKIEKGAQGSDAHQECRNLLLSDEARAYSIPELEI 187 (229)
T ss_dssp EEEE-TT-EEEEEEEEEE-STT-EEEEEEEEEES-TTSEEEEEEEEEEECTSTTEEEEEEEEEEE-STT-EEEEEEEEEE
T ss_pred EEEecCCEEEeccEEEEEECCCcEEEEEEEEEEc-CCceEEEEeEEEEhhhhhCChheeeEeeEEccCCeEEEEEEhHhc
Confidence 9999999999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred EcCCeeeeeeeeccCCChhhHHHHHhcCCCHHHHHHHHHHhh
Q 013853 361 IADDVKCSHGAAISDLEESQLFYFQARGIDLETARKALVFSF 402 (435)
Q Consensus 361 ~adDVkcsHgATvG~iDeeqLFYL~SRGI~e~eA~~LLi~gF 402 (435)
++|||+|+||||||+||+|||||||||||+++||++||++||
T Consensus 188 ~~~dV~a~H~AtvG~idee~LFYL~SRGl~~~eA~~Liv~gF 229 (229)
T PF01458_consen 188 DEDDVKASHGATVGQIDEEQLFYLMSRGLSEEEARKLIVKGF 229 (229)
T ss_dssp -SSSEEEEEEEEEEES-HHHHHHHHCTT--HHHHHHHHHHHH
T ss_pred ccCCcEEEEeeEeecCCHHHHHHHHHcCCCHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999999
No 8
>PF01458 UPF0051: Uncharacterized protein family (UPF0051); InterPro: IPR000825 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents SufB and SufD proteins that form part of the SufBCD complex in the SUF system. No specific functions have been assigned to these proteins.; GO: 0016226 iron-sulfur cluster assembly; PDB: 1VH4_B 2ZU0_A 4DN7_A.
Probab=98.02 E-value=0.0029 Score=60.99 Aligned_cols=152 Identities=14% Similarity=0.103 Sum_probs=102.6
Q ss_pred eeeeEEEEEEcCCCEEEEEEE--EecCCCcEEEEeEEEEEecCcEEEEEEEEeC--CeEEEEEeEEEEeCCCcEEEEEEE
Q 013853 206 WANSVLEVVIGKGGKVRHSYL--QNQSLNAAHIKWTAVRQETASGYELVEVSTG--GKLSRHNVHVQQLGPDTETELSSF 281 (435)
Q Consensus 206 ~~n~v~ei~v~~~A~l~~~~i--q~~~~~~~~~~~~~v~~~~~s~~~~~~i~~G--g~~~r~~~~~~l~G~~a~~~~~g~ 281 (435)
..+.-+.|.+++||++++..- .......++...+.+.++++|++++..+... .........+. .|++|..+...+
T Consensus 4 ~~~~~~~I~v~~~s~~~i~~~~~~~~~~~~~~~~~~~i~v~~~a~l~~~~~~~~~~~~~~~~~~~~~-~~~~a~~~~~~~ 82 (229)
T PF01458_consen 4 AQFPRNLIIVEEGSEVTIIESYSSNSGESSLHNGVIEIYVGENARLKYVSVQNWGENSIHFSNTRVI-LGENASLNWVSV 82 (229)
T ss_dssp EEEEEEEEEE-TT-EEEEEEEEEETTSSEEEEEEEEEEEE-TT-EEEEEEEEE--TCEEEEEEEEEE-E-TT-EEEEEEE
T ss_pred cEeeeEEEEECCCCEEEEEEEeCCCCCCceEEEEEEEEEECCCcEEEEEEEecCCCcEEEEEEEEEE-EcCceEEEEEEE
Confidence 445668899999999999877 3345567788888999999999999988764 33334444555 589999999998
Q ss_pred EEecCCceEeeeeEEEEecCcceeeEEEEEEEecCCceEEEEEEEEEccCCccCceEEEeceEEeCCCceeeeeeeEEEE
Q 013853 282 HLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNRYAQQTDAGQLTRSLLLEPRATVNVKPNLQII 361 (435)
Q Consensus 282 ~l~~~~q~~D~~t~i~h~~p~t~S~~~~k~Il~~d~s~~vf~G~I~V~~~Aq~t~a~q~~~~LLLs~~A~~~s~P~LeI~ 361 (435)
.++.+..+.+. .+.+.++++.++.....+.. ++.+. +=...|.-.+.+|.+.+..++++.+ +|+..-.-.+.|.
T Consensus 83 ~~g~~~~~~~~--~~~l~G~~s~~~~~~~~~~~-~~~~~--d~~~~i~h~~~~t~s~~~~r~v~~d-~s~~vf~G~i~i~ 156 (229)
T PF01458_consen 83 SLGGKMSRNRI--EIELNGEGSSAELNGVYLGS-GDQRI--DINTNIIHNGPNTTSNILSRGVLKD-KSKVVFRGRIKIE 156 (229)
T ss_dssp ES--SEEEEEE--EEEE-STT-EEEEEEEEEE--TT-EE--EEEEEEEE-STT-EEEEEEEEEEST-TSEEEEEEEEEEE
T ss_pred EeCCeeEEEEE--EEEEcCCCCEEEEEEEEEec-CCEEE--eccEEEEEECCCcEEEEEEEEEEcC-CceEEEEeEEEEh
Confidence 88777777665 46678999888876666655 55444 4445557888999999999999986 7888888777776
Q ss_pred cCC
Q 013853 362 ADD 364 (435)
Q Consensus 362 adD 364 (435)
.+=
T Consensus 157 ~~a 159 (229)
T PF01458_consen 157 KGA 159 (229)
T ss_dssp CTS
T ss_pred hhh
Confidence 553
No 9
>CHL00085 ycf24 putative ABC transporter
Probab=97.57 E-value=0.016 Score=62.24 Aligned_cols=150 Identities=8% Similarity=-0.019 Sum_probs=108.6
Q ss_pred eeEEEEEEcCCCEEEEEEEEec---CCCcEEEEeEEEEEecCcEEEEEEEEe---------CCeEEEEEeEEEEeCCCcE
Q 013853 208 NSVLEVVIGKGGKVRHSYLQNQ---SLNAAHIKWTAVRQETASGYELVEVST---------GGKLSRHNVHVQQLGPDTE 275 (435)
Q Consensus 208 n~v~ei~v~~~A~l~~~~iq~~---~~~~~~~~~~~v~~~~~s~~~~~~i~~---------Gg~~~r~~~~~~l~G~~a~ 275 (435)
+..+-|.+++||+++++.-... .....|..-+.+.++++|+++++.+.. ++............|++|.
T Consensus 224 ~~r~lIi~eega~~~iiE~~~s~~~~~~~~~~~v~Ei~v~~~A~l~~~~iq~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 303 (485)
T CHL00085 224 FERTLIIAEENSYVSYLEGCTAPQYDTNQLHAAVVELIALENAEIKYSTVQNWYAGDENGEGGIYNFVTKRGLCAGKNSK 303 (485)
T ss_pred eeeEEEEECCCCEEEEEEEeccCCCCccceEEEEEEEEECCCCEEEEEEEEeecCccccccCceeeeeeeEEEEEcCCcE
Confidence 3456688999999998854432 345678888999999999999998855 2333222333445689999
Q ss_pred EEEEEEEEecCCceEeeeeEEEEecCcceeeEEEEEEEecCCceEEEEEEEEEccCCccCceEEEeceEEeCCCceeeee
Q 013853 276 TELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNRYAQQTDAGQLTRSLLLEPRATVNVK 355 (435)
Q Consensus 276 ~~~~g~~l~~~~q~~D~~t~i~h~~p~t~S~~~~k~Il~~d~s~~vf~G~I~V~~~Aq~t~a~q~~~~LLLs~~A~~~s~ 355 (435)
.+...+.++.+-.+.+.. +.+.|+++.++...-.++. +....+=...|...+.+|.+.+..++++. ++|+..-.
T Consensus 304 ~~~~~~~~G~~~~r~~~~--~~L~G~~a~~~~~~i~l~~---~~Q~~D~~t~v~h~~p~t~S~~~~k~Il~-d~s~~vF~ 377 (485)
T CHL00085 304 ISWTQVETGSAITWKYPS--CILIGDNSQGEFYSVALTN---NYQQADTGTKMIHIGKNTKSRIISKGISA-GKSKNSYR 377 (485)
T ss_pred EEEEEEEecCceEEeece--EEEecCCcEEEEEEEEEcc---CCEEEEeeEEEEEcCCCcEEEEEEEEEEC-CCCEEEEE
Confidence 998888888776776654 6678988877765555544 44455555555678899999999999997 47888877
Q ss_pred eeEEEEcC
Q 013853 356 PNLQIIAD 363 (435)
Q Consensus 356 P~LeI~ad 363 (435)
-.+.|..+
T Consensus 378 G~i~V~~~ 385 (485)
T CHL00085 378 GLVKIGPK 385 (485)
T ss_pred EEEEECCC
Confidence 77777543
No 10
>TIGR01981 sufD FeS assembly protein SufD, group 1. This protein, SufD, forms a cytosolic complex SufBCD. This complex enhances the cysteine desulfurase of SufSE. The system, together with SufA, is believed to act in iron-sulfur cluster formation during oxidative stress. SufB and SufD are homologous. Note that SufC belongs to the family of ABC transporter ATP binding proteins, so this protein, encoded by an adjacent gene, has often been annotated as a transporter component.
Probab=97.50 E-value=0.018 Score=59.49 Aligned_cols=148 Identities=18% Similarity=0.113 Sum_probs=108.2
Q ss_pred eEEEEEEcCCCEEEEEEEEec----CCCcEEEEeEEEEEecCcEEEEEEEEeCCeEEE--EEeEEEEeCCCcEEEEEEEE
Q 013853 209 SVLEVVIGKGGKVRHSYLQNQ----SLNAAHIKWTAVRQETASGYELVEVSTGGKLSR--HNVHVQQLGPDTETELSSFH 282 (435)
Q Consensus 209 ~v~ei~v~~~A~l~~~~iq~~----~~~~~~~~~~~v~~~~~s~~~~~~i~~Gg~~~r--~~~~~~l~G~~a~~~~~g~~ 282 (435)
..+-|.+++||+++++.-... +...++-..+.+.++++|++++..+...+.-+. ....+. .+++|..+...+.
T Consensus 125 ~~~~i~v~~~s~~~iie~~~~~~~~~~~~~~~~~~ei~~~~~A~l~~~~iq~~~~~~~~~~~~~~~-~~~~a~~~~~~~~ 203 (366)
T TIGR01981 125 PRLLIIVEKGSKITVIERFETISLNSGKAFTNSVVEITVGANASVIFVKVQFFSKNSTHFSNHRAF-IGRDATLRLAVVN 203 (366)
T ss_pred eEEEEEECCCCEEEEEEEecCCCCCCcccEEEEEEEEEECCCCEEEEEEEEcCCCCcEEEEEeEEE-EcCCCEEEEEEEE
Confidence 356789999999998865532 223477778899999999999999876554322 233444 5899999999888
Q ss_pred EecCCceEeeeeEEEEecCcceeeEEEEEEEecCCceEEEEEEEEEccCCccCceEEEeceEEeCCCceeeeeeeEEEEc
Q 013853 283 LLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNRYAQQTDAGQLTRSLLLEPRATVNVKPNLQIIA 362 (435)
Q Consensus 283 l~~~~q~~D~~t~i~h~~p~t~S~~~~k~Il~~d~s~~vf~G~I~V~~~Aq~t~a~q~~~~LLLs~~A~~~s~P~LeI~a 362 (435)
++.+..+.++ .+.+.|+++.++.....++. +...++=...|.-.+.+|.+.|..++++.+ +|+..-.=.+.|..
T Consensus 204 ~gg~~~r~~~--~~~l~G~~a~~~~~g~~~~~---~~q~~D~~~~i~h~~~~t~s~~~~kgvl~d-~s~~vf~G~i~I~~ 277 (366)
T TIGR01981 204 LGGKLSRHNF--DVDLEGEGSKLEVKGLAFGA---GSQHVDVRTNVVHNGPDTKSNILHRGILDD-RAHGVFRGIIHIPK 277 (366)
T ss_pred cCCccEEEee--eEEEEcCCcEEEEEEEEECC---CCEEeccCeEEEEcCCCcEEEEEEEEEEcC-CcEEEEEEEEEECC
Confidence 8777666554 57788888777755555444 445555556667889999999999999985 68887777666654
Q ss_pred C
Q 013853 363 D 363 (435)
Q Consensus 363 d 363 (435)
+
T Consensus 278 ~ 278 (366)
T TIGR01981 278 G 278 (366)
T ss_pred C
Confidence 4
No 11
>TIGR01980 sufB FeS assembly protein SufB. This protein, SufB, forms a cytosolic complex SufBCD. This complex enhances the cysteine desulfurase of SufSE. The system, together with SufA, is believed to act in iron-sulfur cluster formation during oxidative stress. Note that SufC belongs to the family of ABC transporter ATP binding proteins, so this protein, encoded by an adjacent gene, has often been annotated as a transporter component.
Probab=97.47 E-value=0.021 Score=60.75 Aligned_cols=150 Identities=12% Similarity=0.001 Sum_probs=109.8
Q ss_pred eeEEEEEEcCCCEEEEEEEEe---cCCCcEEEEeEEEEEecCcEEEEEEEEeCCeEEEEEe-EEEEeCCCcEEEEEEEEE
Q 013853 208 NSVLEVVIGKGGKVRHSYLQN---QSLNAAHIKWTAVRQETASGYELVEVSTGGKLSRHNV-HVQQLGPDTETELSSFHL 283 (435)
Q Consensus 208 n~v~ei~v~~~A~l~~~~iq~---~~~~~~~~~~~~v~~~~~s~~~~~~i~~Gg~~~r~~~-~~~l~G~~a~~~~~g~~l 283 (435)
...+-|.+++||+++++.-.. ......|...+.+.++++|++++..+...+.-+.+-. .....+++|..+...+.+
T Consensus 204 ~~r~lIi~ee~s~~~iie~~~s~~~~~~~~~~~v~Ei~v~~~A~v~~~~iq~~~~~~~~~~~~~~~~~~~a~~~~~~~~l 283 (448)
T TIGR01980 204 FEHTLIIADEGASVHYIEGCSAPIYSTNSLHAAVVELIVKEDARVRYSTVQNWSKNVYNLVTKRALVEENGTMEWVSGSI 283 (448)
T ss_pred eeeEEEEECCCCEEEEEEeccccCCCccceEEEEEEEEEcCCCEEEEEEEeecCCCeEEEEEEEEEEcCCCEEEEEEEEe
Confidence 356778999999999875433 2345678888999999999999999976544333322 223458999999988888
Q ss_pred ecCCceEeeeeEEEEecCcceeeEEEEEEEecCCceEEEEEEEEEccCCccCceEEEeceEEeCCCceeeeeeeEEEEcC
Q 013853 284 LVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNRYAQQTDAGQLTRSLLLEPRATVNVKPNLQIIAD 363 (435)
Q Consensus 284 ~~~~q~~D~~t~i~h~~p~t~S~~~~k~Il~~d~s~~vf~G~I~V~~~Aq~t~a~q~~~~LLLs~~A~~~s~P~LeI~ad 363 (435)
+.+..+.+. .+.+.|+++.++.....+.. +....+=...|...+.+|.+.|..++++. ++|+..-.-.+.|..+
T Consensus 284 G~~~s~~~~--~~~L~G~~a~~~~~~~~l~~---~~q~~D~~t~v~h~~p~t~s~~~~k~v~~-d~s~~vf~G~i~v~~~ 357 (448)
T TIGR01980 284 GSKITMKYP--SSILKGEGAKTEFLSIAFAG---KGQHLDTGAKMIHLAPNTSSTIISKSISK-GGGKSTYRGLVKIGPG 357 (448)
T ss_pred cCceEEEec--eEEEEcCCcEEEEEEEEecC---CCEEEEcceEEEEeCCCcEEEEEEEEEEC-CCcEEEEEEEEEECCC
Confidence 877666555 46678888777766555544 44555555566788899999999999997 4688877777777544
No 12
>PRK10948 cysteine desulfurase activator complex subunit SufD; Provisional
Probab=97.40 E-value=0.036 Score=58.56 Aligned_cols=145 Identities=10% Similarity=0.050 Sum_probs=103.9
Q ss_pred EEEEEcCCCEEEEEEEEecC--CCcEEEEeEEEEEecCcEEEEEEEEeCCeEEEEEe-EEEEeCCCcEEEEEEEEEecCC
Q 013853 211 LEVVIGKGGKVRHSYLQNQS--LNAAHIKWTAVRQETASGYELVEVSTGGKLSRHNV-HVQQLGPDTETELSSFHLLVSD 287 (435)
Q Consensus 211 ~ei~v~~~A~l~~~~iq~~~--~~~~~~~~~~v~~~~~s~~~~~~i~~Gg~~~r~~~-~~~l~G~~a~~~~~g~~l~~~~ 287 (435)
.-|.+++||+++++...... ...++-..+.+.++++|++++..+...+.-+.+-. .-...+++|..+...+.++.+-
T Consensus 174 ~lI~~e~~a~~tiie~~~s~~~~~~~~n~v~ei~~~~~A~l~~~~lq~~~~~~~~~~~~~~~~~~~s~~~~~~~~~G~~~ 253 (424)
T PRK10948 174 HHLDLAEGAEATVIEHFVSLNEARHFTGARLTMNVADNAHLNHIKLAFENPSSYHFAHNDLLLGRDARAFSHSFLLGAAV 253 (424)
T ss_pred EEEEECCCCEEEEEEEeecCCCCceeEeeeEEEEECCCCEEEEEEEEccCCCcEEEEEeEEEEcCCCEEEEEEEEeCCce
Confidence 55899999999988665432 22344455678899999999999977544433222 2223689999999999988776
Q ss_pred ceEeeeeEEEEecCcceeeEEEEEEEecCCceEEEEEEEEEccCCccCceEEEeceEEeCCCceeeeeeeEEEE
Q 013853 288 QTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNRYAQQTDAGQLTRSLLLEPRATVNVKPNLQII 361 (435)
Q Consensus 288 q~~D~~t~i~h~~p~t~S~~~~k~Il~~d~s~~vf~G~I~V~~~Aq~t~a~q~~~~LLLs~~A~~~s~P~LeI~ 361 (435)
.+.+.. +.+.|+++.++.. |+.. .++...++=...|...+.+|.+.|..++++. ++|+..-.=.+.|.
T Consensus 254 ~r~~~~--~~L~G~~a~~~~~--g~~l-~~~~q~~D~~~~i~H~~p~t~S~~~~kgvl~-d~s~~vF~G~i~V~ 321 (424)
T PRK10948 254 LRHNTS--TQLNGENSTLRLN--SLAM-PVKNEVCDTRTWLEHNKGYCNSRQLHKTIVS-DKGRAVFNGLIKVA 321 (424)
T ss_pred EEEeee--EEEECCCcEEEEE--EEEE-cCCCEEEEccEEEEEcCCCcEEEEEEEEEEc-CCCEEEEEEEEEEe
Confidence 676654 6778888776644 4444 4455556666677789999999999999998 57887666666665
No 13
>PRK11814 cysteine desulfurase activator complex subunit SufB; Provisional
Probab=97.38 E-value=0.035 Score=59.59 Aligned_cols=151 Identities=9% Similarity=0.013 Sum_probs=107.9
Q ss_pred eeEEEEEEcCCCEEEEEEEEec---CCCcEEEEeEEEEEecCcEEEEEEEEe--------CC-eEEEEEeEEEEeCCCcE
Q 013853 208 NSVLEVVIGKGGKVRHSYLQNQ---SLNAAHIKWTAVRQETASGYELVEVST--------GG-KLSRHNVHVQQLGPDTE 275 (435)
Q Consensus 208 n~v~ei~v~~~A~l~~~~iq~~---~~~~~~~~~~~v~~~~~s~~~~~~i~~--------Gg-~~~r~~~~~~l~G~~a~ 275 (435)
...+-|.+++||+++++.-... ....+|...+.+.++++|+++++.+.. ++ ............|.+|.
T Consensus 225 ~~r~lIi~ee~S~~~iiE~~~s~~~~~~~~~~~v~Ei~v~~~A~l~~~~iq~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 304 (486)
T PRK11814 225 FERTLIIADEGSYVSYLEGCTAPMRDENQLHAAVVELVALDDAEIKYSTVQNWYPGDENGKGGIYNFVTKRGLCRGENSK 304 (486)
T ss_pred eeEEEEEECCCCEEEEEEEecCCCCCccceeeEEEEEEECCCCEEEEEEEEeecCccccCCCceEEEeeeEEEEecCCcE
Confidence 3456688999999988754432 345678888899999999999988864 22 22222333443688998
Q ss_pred EEEEEEEEecCCceEeeeeEEEEecCcceeeEEEEEEEecCCceEEEEEEEEEccCCccCceEEEeceEEeCCCceeeee
Q 013853 276 TELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNRYAQQTDAGQLTRSLLLEPRATVNVK 355 (435)
Q Consensus 276 ~~~~g~~l~~~~q~~D~~t~i~h~~p~t~S~~~~k~Il~~d~s~~vf~G~I~V~~~Aq~t~a~q~~~~LLLs~~A~~~s~ 355 (435)
.+...+.++.+-.+.+.. +.+.|+++.++...-.+.. +...++=...|...+.+|.+.+..++++. ++|+..-.
T Consensus 305 ~~~~~~~lG~~~~r~~~~--~~L~G~ga~~~~~gi~l~~---~~q~~D~~t~v~H~~p~t~S~~~~k~V~~-d~s~~vF~ 378 (486)
T PRK11814 305 ISWTQVETGSAITWKYPS--CILRGDNSVGEFYSVALTN---GHQQADTGTKMIHIGKNTKSTIISKGISA-GHSQNTYR 378 (486)
T ss_pred EEEEEEEcCCceEEeecc--eEEecCCcEEEEEeEEecc---CCEEEEeeEEEEEcCCCcEEEEEEEEEEc-CCcEEEEE
Confidence 888888887776666654 5678888877765555544 44555555566788899999999999987 57888888
Q ss_pred eeEEEEcCC
Q 013853 356 PNLQIIADD 364 (435)
Q Consensus 356 P~LeI~adD 364 (435)
-.+.|..+=
T Consensus 379 G~i~V~~~A 387 (486)
T PRK11814 379 GLVKIMPKA 387 (486)
T ss_pred EEEEECCCC
Confidence 777775543
No 14
>COG0719 SufB Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.17 Score=53.27 Aligned_cols=145 Identities=10% Similarity=0.045 Sum_probs=107.4
Q ss_pred EEEEEEcCCCEEEEEEEEe--cCCCcEEEEeEEEEEecCcEEEEEEEEeCCe-EEEEEeEEEEeCCCcEEEEEEEEEecC
Q 013853 210 VLEVVIGKGGKVRHSYLQN--QSLNAAHIKWTAVRQETASGYELVEVSTGGK-LSRHNVHVQQLGPDTETELSSFHLLVS 286 (435)
Q Consensus 210 v~ei~v~~~A~l~~~~iq~--~~~~~~~~~~~~v~~~~~s~~~~~~i~~Gg~-~~r~~~~~~l~G~~a~~~~~g~~l~~~ 286 (435)
.+-|.+++||.+.|+.=.. .+.+..|...+.+.+++||.+++..+..-+. ...........|+++.++...+.++.+
T Consensus 165 ~~lIiveega~v~~ie~~~~p~~~~~~h~~vvei~v~~nA~v~~~~vqn~~~~~~~~~~~~~~~~~~a~~~~~~~~~G~~ 244 (412)
T COG0719 165 RTLIIVEEGAEITVIEGCSAPVGSGSLHNGVVEIFVGENASLTYTTVQNWSPVYNHLTKRAAVEEEDATVRWTQVTLGSK 244 (412)
T ss_pred eEEEEECCCCEEEEEccccCCCCCCcceeeEEEEEEcCCCEEEEEEecccccceeeeeeeeeeeccCcEEEEEEEecCCc
Confidence 4668899999988875553 4455568888999999999999999976554 344444556678999999888888877
Q ss_pred CceEeeeeEEEEecCcceeeEEEEEEEecCCceEEEEEEEEEccCCccCceEEEeceEEeCCCceeeeeeeEEE
Q 013853 287 DQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNRYAQQTDAGQLTRSLLLEPRATVNVKPNLQI 360 (435)
Q Consensus 287 ~q~~D~~t~i~h~~p~t~S~~~~k~Il~~d~s~~vf~G~I~V~~~Aq~t~a~q~~~~LLLs~~A~~~s~P~LeI 360 (435)
...... ..++.|.++.++.+...+.. +.-..+=...+...+..|.+.+..++++.+ +|+..-.=.+.|
T Consensus 245 ~t~~~~--~~~l~Ge~a~~e~~sv~~~~---~~q~~D~~~~v~h~g~~t~s~i~~kgI~~d-~a~~vfrG~i~i 312 (412)
T COG0719 245 VTRKYP--SVRLKGEGADGELLSVAFAG---GGQHMDVGTKMIHNGPNTRSNILSKGIVKD-GARTVFRGLIDI 312 (412)
T ss_pred eEEEec--eEEEEcCCceEEEEEEEEcc---CCeEEcccceEEEecCCceeEEEEEEEEcC-CCEEEEEeEEEE
Confidence 766655 45678888777766555444 445556556667788999999999999996 577766656666
No 15
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=67.20 E-value=6 Score=26.93 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=22.2
Q ss_pred CChhhHHHHHhcCCCHHHHHHHHHHh
Q 013853 376 LEESQLFYFQARGIDLETARKALVFS 401 (435)
Q Consensus 376 iDeeqLFYL~SRGI~e~eA~~LLi~g 401 (435)
||+++|=.|+..|+++++|++-|...
T Consensus 1 i~~~~v~~L~~mGf~~~~~~~AL~~~ 26 (37)
T PF00627_consen 1 IDEEKVQQLMEMGFSREQAREALRAC 26 (37)
T ss_dssp SHHHHHHHHHHHTS-HHHHHHHHHHT
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 68999999999999999999988654
No 16
>PF01774 UreD: UreD urease accessory protein; InterPro: IPR002669 UreD is a urease accessory protein. Urease IPR005848 from INTERPRO hydrolyses urea into ammonia and carbamic acid []. UreD is involved in activation of the urease enzyme via the UreD-UreF-UreG-urease complex [] and is required for urease nickel metallocentre assembly []. See also UreF IPR002639 from INTERPRO, UreG IPR004400 from INTERPRO.; GO: 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 3SF5_D.
Probab=45.65 E-value=2.7e+02 Score=26.33 Aligned_cols=66 Identities=12% Similarity=0.197 Sum_probs=32.3
Q ss_pred EEEEEcCCCEEEEE-----EEEecCCCcEEEEeEEEEEecCcEEEEE---EEEeCCeEEEEEeEEEEeCCCcEEE
Q 013853 211 LEVVIGKGGKVRHS-----YLQNQSLNAAHIKWTAVRQETASGYELV---EVSTGGKLSRHNVHVQQLGPDTETE 277 (435)
Q Consensus 211 ~ei~v~~~A~l~~~-----~iq~~~~~~~~~~~~~v~~~~~s~~~~~---~i~~Gg~~~r~~~~~~l~G~~a~~~ 277 (435)
.+|.+++||++... +|.....+......+.+.++++|.++|. .|-+.+..-+....++|. ++|..-
T Consensus 19 ~~i~v~~ga~~~ltTqaatkvy~~~~~~~a~q~~~~~v~~ga~Le~lP~p~I~f~~A~~~q~~~v~l~-~~A~l~ 92 (209)
T PF01774_consen 19 IDITVGPGARLLLTTQAATKVYRMRGGRPARQRIRITVEEGAYLEYLPDPTIPFAGARFRQRTRVDLA-PGASLI 92 (209)
T ss_dssp EEEEE-TT-EEEEE----EEE---TTS--EEEEEEEEE-TT-EEEE----EEE-TT-EEEEEEEEEE--TT-EEE
T ss_pred EEEEECCCCEEEEechhhhhhcCCCCCCcEEEEEEEEECCCCEEEEcCCCCEeeCCCEEEEEEEEEEC-CCCEEE
Confidence 56778888887655 3333323322445667777888888777 455556555666667763 444443
No 17
>PF12247 MKT1_N: Temperature dependent protein affecting M2 dsRNA replication; InterPro: IPR022040 This domain family is found in eukaryotes, and is typically between 231 and 255 amino acids in length. There is a single completely conserved residue P that may be functionally important. MKT1 is required for maintenance of K2 toxin above 30 degrees C in strains with the L-A-HN variant of the L-A double-stranded RNA virus of Saccharomyces cerevisiae. MKT1 is a 93 kDa protein with serine-rich regions and the retroviral protease signature, DTG. This family is the N-terminal region of MKT1.
Probab=42.33 E-value=27 Score=29.02 Aligned_cols=34 Identities=18% Similarity=0.154 Sum_probs=29.5
Q ss_pred ccCCChhhHHHHHhcCCCHHHHHHHHHHhhHHHH
Q 013853 373 ISDLEESQLFYFQARGIDLETARKALVFSFGAEV 406 (435)
Q Consensus 373 vG~iDeeqLFYL~SRGI~e~eA~~LLi~gFl~ev 406 (435)
+|+-=+++|||++|+|+=-.+--..|+.|.+.+-
T Consensus 8 iG~rLP~elYfyls~GLi~~~ll~~lt~G~~~~~ 41 (90)
T PF12247_consen 8 IGQRLPDELYFYLSIGLISPRLLNALTSGEWIER 41 (90)
T ss_pred hccCCCHHHHHHHHccccChHHHhHhccceEecc
Confidence 5666689999999999999999999999988553
No 18
>COG0829 UreH Urease accessory protein UreH [Posttranslational modification, protein turnover, chaperones]
Probab=42.33 E-value=2.2e+02 Score=28.53 Aligned_cols=64 Identities=8% Similarity=0.121 Sum_probs=35.5
Q ss_pred EEEEEcCCCEEEEE-----EEEecCCCcEEEEeEEEEEecCcEEEEE---EEEeCCeEEEEEeEEEEeCCCcEE
Q 013853 211 LEVVIGKGGKVRHS-----YLQNQSLNAAHIKWTAVRQETASGYELV---EVSTGGKLSRHNVHVQQLGPDTET 276 (435)
Q Consensus 211 ~ei~v~~~A~l~~~-----~iq~~~~~~~~~~~~~v~~~~~s~~~~~---~i~~Gg~~~r~~~~~~l~G~~a~~ 276 (435)
.+|.+++||++... +|+....+. -...+.+.+++||.+.|. .|.+.+..-+..+.+.|. ++|..
T Consensus 64 ~di~lg~~a~~~iTTQsatKvYrs~~g~-A~Q~~~i~vg~nA~LewlPq~tI~F~~a~f~q~~~~~L~-~sA~l 135 (269)
T COG0829 64 IDIELGDNAKALITTQSATKVYRSPGGQ-ATQTTNITVGENARLEWLPQETIPFEGARFKQHTRFELA-SSATL 135 (269)
T ss_pred EEEEECCCceEEEEccccceeEeCCCCc-eEEEEEEEECCCCEEEecCCcceecCCceeEEEEEEEeC-CCcee
Confidence 45677777777554 444444333 334566667777777776 344544444445555553 55544
No 19
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=26.99 E-value=95 Score=20.58 Aligned_cols=26 Identities=27% Similarity=0.210 Sum_probs=21.4
Q ss_pred ChhhHHHHHhcCCCHHHHHHHHHHhh
Q 013853 377 EESQLFYFQARGIDLETARKALVFSF 402 (435)
Q Consensus 377 DeeqLFYL~SRGI~e~eA~~LLi~gF 402 (435)
+++.+=-|++-|+++++|+.-|...-
T Consensus 1 ~~~~v~~L~~mGf~~~~a~~aL~~~~ 26 (37)
T smart00165 1 DEEKIDQLLEMGFSREEALKALRAAN 26 (37)
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 46778889999999999998876543
No 20
>PF14076 DUF4258: Domain of unknown function (DUF4258)
Probab=25.28 E-value=80 Score=23.89 Aligned_cols=28 Identities=25% Similarity=0.115 Sum_probs=23.0
Q ss_pred CChhhHHHHHhcCCCHHHHHHHHHHhhH
Q 013853 376 LEESQLFYFQARGIDLETARKALVFSFG 403 (435)
Q Consensus 376 iDeeqLFYL~SRGI~e~eA~~LLi~gFl 403 (435)
+.+..+-=|+.|||+.++....|..|-.
T Consensus 2 ~s~Ha~~rm~eR~Is~~~I~~~l~~g~i 29 (73)
T PF14076_consen 2 FSKHARERMQERGISEEDIEDALENGEI 29 (73)
T ss_pred CCHHHHHHHHhCCCCHHHHHHHHhcCeE
Confidence 3455666789999999999999988865
No 21
>PF04256 DUF434: Protein of unknown function (DUF434); InterPro: IPR007368 This is a family of uncharacterised proteins.
Probab=23.98 E-value=68 Score=24.55 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=21.3
Q ss_pred hhHHHHHhcCCCHHHHHHHHHHhhH
Q 013853 379 SQLFYFQARGIDLETARKALVFSFG 403 (435)
Q Consensus 379 eqLFYL~SRGI~e~eA~~LLi~gFl 403 (435)
+.+.||..||-+.+.|-.++-.=|.
T Consensus 8 ~Dl~yLLnRGY~~k~al~fVgnhy~ 32 (58)
T PF04256_consen 8 EDLRYLLNRGYPKKSALEFVGNHYR 32 (58)
T ss_pred HHHHHHHhCCCCchhHHHHHHHhcc
Confidence 5689999999999999988876653
No 22
>PF08275 Toprim_N: DNA primase catalytic core, N-terminal domain; InterPro: IPR013264 This is the N-terminal, catalytic core domain of DNA primases. DNA primase (2.7.7 from EC) is a nucleotidyltransferase which synthesizes the oligoribonucleotide primers required for DNA replication on the lagging strand of the replication fork. It can also prime the leading strand and has been implicated in cell division []. ; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A 2AU3_A.
Probab=23.88 E-value=62 Score=28.34 Aligned_cols=20 Identities=35% Similarity=0.529 Sum_probs=14.4
Q ss_pred hhhHHHHHhcCCCHHHHHHH
Q 013853 378 ESQLFYFQARGIDLETARKA 397 (435)
Q Consensus 378 eeqLFYL~SRGI~e~eA~~L 397 (435)
.+.+=||.+|||+++.++..
T Consensus 12 ~~a~~YL~~Rgl~~e~i~~F 31 (128)
T PF08275_consen 12 KEALEYLKKRGLSDETIKKF 31 (128)
T ss_dssp HHHHHHHHHTT--HHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHh
Confidence 34889999999998877654
No 23
>TIGR02111 PQQ_syn_pqqC coenzyme PQQ biosynthesis protein C. This model describes the coenzyme PQQ (pyrrolo-quinoline-quinone) biosynthesis protein PqqC.In contrast to the broader model pfam05312, this model does not include related proteins likely to be functionally distinct from PqqC, such as homologs found in the Chlamydias.
Probab=23.29 E-value=1.5e+02 Score=29.25 Aligned_cols=42 Identities=29% Similarity=0.544 Sum_probs=33.7
Q ss_pred ccCCChhhH-------HHHHhcCCCHHHHHHHHHHhhHHHHHhcCCChhHHHHHHHHHHH
Q 013853 373 ISDLEESQL-------FYFQARGIDLETARKALVFSFGAEVIERFPYPSIRNQVVSHVKN 425 (435)
Q Consensus 373 vG~iDeeqL-------FYL~SRGI~e~eA~~LLi~gFl~evi~~ip~e~lr~~l~~~i~~ 425 (435)
-|+++.+|| ||.+.+ ||..+| .|+.+.|+.++|..+.+.|.+
T Consensus 30 ~GkLt~~ql~~wa~nrYyyq~~-iP~kdA----------Ai~s~c~D~e~Rr~wl~ri~D 78 (239)
T TIGR02111 30 DGKLTRDQVQAWVLNRYYYQAN-IPLKDA----------AILARCPDPQLRRIWRQRILD 78 (239)
T ss_pred cCCCCHHHHHHHHHHhhhhhhc-ccHHHH----------HHHHcCCCHHHHHHHHHHHHH
Confidence 478999999 999998 998875 456899999998877666643
No 24
>PF10410 DnaB_bind: DnaB-helicase binding domain of primase; InterPro: IPR019475 This entry represents the C-terminal region three-helical domain of DNA primase []. Primases synthesise short RNA strands on single-stranded DNA templates, thereby generating the hybrid duplexes required for the initiation of synthesis by DNA polymerases. Primases are recruited to single-stranded DNA by helicases - this domain binds DnaB-helicase []. It is associated with the Toprim domain IPR006171 from INTERPRO, which is the central catalytic core. ; GO: 0016779 nucleotidyltransferase activity; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A.
Probab=22.51 E-value=2.5e+02 Score=20.37 Aligned_cols=46 Identities=17% Similarity=0.265 Sum_probs=31.4
Q ss_pred HHHhcC-CCHHHHHHHHHHhhHHHHHhcCCChhHHHHHHHHHHHhhcc
Q 013853 383 YFQARG-IDLETARKALVFSFGAEVIERFPYPSIRNQVVSHVKNLMGT 429 (435)
Q Consensus 383 YL~SRG-I~e~eA~~LLi~gFl~evi~~ip~e~lr~~l~~~i~~~l~~ 429 (435)
|++.++ ++..+-|.=++.- +.+.|.+|+++-.|+...+.+.++++-
T Consensus 8 ~l~~~~dl~~~egk~~~~~~-~~~~i~~i~~~i~r~~y~~~la~~~~i 54 (59)
T PF10410_consen 8 RLSKGYDLDTPEGKAEAVRE-AAPLIAQIPDPIERELYIRELAERLGI 54 (59)
T ss_dssp HHGGGS-TTSHHHHHHHHHH-HHHHHTT--SHHHHHHHHHHHHHHCT-
T ss_pred HHHhcCCCCCHHHHHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHHhCc
Confidence 444443 5555555555554 678999999999999999999988764
No 25
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=21.78 E-value=1.4e+02 Score=19.89 Aligned_cols=26 Identities=35% Similarity=0.326 Sum_probs=21.1
Q ss_pred ChhhHHHHHhcCCCHHHHHHHHHHhh
Q 013853 377 EESQLFYFQARGIDLETARKALVFSF 402 (435)
Q Consensus 377 DeeqLFYL~SRGI~e~eA~~LLi~gF 402 (435)
+++++=-|++-|+++++|+..|...-
T Consensus 1 ~~~~v~~L~~mGf~~~~~~~AL~~~~ 26 (38)
T cd00194 1 DEEKLEQLLEMGFSREEARKALRATN 26 (38)
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 46778889999999999998876543
No 26
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=20.84 E-value=1.3e+02 Score=28.63 Aligned_cols=60 Identities=20% Similarity=0.200 Sum_probs=34.7
Q ss_pred EEcCCeeeeeeeecc------CCChhhHHHHHhcCCCHHHHHHHHHHhhHHH---HHhcCCChhHHHHH
Q 013853 360 IIADDVKCSHGAAIS------DLEESQLFYFQARGIDLETARKALVFSFGAE---VIERFPYPSIRNQV 419 (435)
Q Consensus 360 I~adDVkcsHgATvG------~iDeeqLFYL~SRGI~e~eA~~LLi~gFl~e---vi~~ip~e~lr~~l 419 (435)
+.+++....|+.+.. .+=+.-.-++...||++++|++|+..-|..- +.+..+.+.|++++
T Consensus 162 ~~e~~~~~~~a~~gs~pa~~~~~~~a~~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~l~~~v 230 (245)
T PRK07634 162 CTEEEVHQLTAVTGSAPAFLYYFAESLIEATKSYGVDEETAKHLVIQMISGSASMLEQTQDPANLREQV 230 (245)
T ss_pred ECHHHcchHHhhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhC
Confidence 345554444443333 2333344456788999999999988766533 33444445666543
No 27
>PF01774 UreD: UreD urease accessory protein; InterPro: IPR002669 UreD is a urease accessory protein. Urease IPR005848 from INTERPRO hydrolyses urea into ammonia and carbamic acid []. UreD is involved in activation of the urease enzyme via the UreD-UreF-UreG-urease complex [] and is required for urease nickel metallocentre assembly []. See also UreF IPR002639 from INTERPRO, UreG IPR004400 from INTERPRO.; GO: 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 3SF5_D.
Probab=20.05 E-value=5.3e+02 Score=24.31 Aligned_cols=55 Identities=15% Similarity=0.064 Sum_probs=32.9
Q ss_pred eeeeEEEEEEcCCCEEEEEEEEe-cCCCcEEEEeEEEEEecCcEEEEEEEEeCCeE
Q 013853 206 WANSVLEVVIGKGGKVRHSYLQN-QSLNAAHIKWTAVRQETASGYELVEVSTGGKL 260 (435)
Q Consensus 206 ~~n~v~ei~v~~~A~l~~~~iq~-~~~~~~~~~~~~v~~~~~s~~~~~~i~~Gg~~ 260 (435)
.....+++.|++||.|+|.--.. .-.++.....+.+.+.++|.+-+.++..-|+.
T Consensus 47 ~a~q~~~~~v~~ga~Le~lP~p~I~f~~A~~~q~~~v~l~~~A~l~~~e~i~~GR~ 102 (209)
T PF01774_consen 47 PARQRIRITVEEGAYLEYLPDPTIPFAGARFRQRTRVDLAPGASLIYWEIITPGRP 102 (209)
T ss_dssp -EEEEEEEEE-TT-EEEE----EEE-TT-EEEEEEEEEE-TT-EEEEEEEEE-S-G
T ss_pred cEEEEEEEEECCCCEEEEcCCCCEeeCCCEEEEEEEEEECCCCEEEEEEecccCCC
Confidence 45567889999999998863222 13456677788899999999988888776665
Done!