Query 013853
Match_columns 435
No_of_seqs 228 out of 1562
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 18:20:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013853.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013853hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vh4_A SUFD protein; structura 100.0 2.2E-79 7.4E-84 637.0 43.1 348 71-431 25-424 (435)
2 4dn7_A ABC transporter, ATP-bi 100.0 1.8E-64 6E-69 522.7 36.4 290 130-429 92-428 (429)
3 1vh4_A SUFD protein; structura 97.5 0.014 4.8E-07 60.3 23.0 147 210-363 174-324 (435)
4 4dn7_A ABC transporter, ATP-bi 97.2 0.13 4.4E-06 53.0 25.3 145 209-359 181-329 (429)
5 2crn_A Ubash3A protein; compac 55.9 8.6 0.0003 28.7 3.1 32 371-402 3-34 (64)
6 3ic3_A Putative pyruvate dehyd 51.8 12 0.00042 30.5 3.6 27 382-408 63-89 (101)
7 2ekk_A UBA domain from E3 ubiq 48.4 14 0.00048 25.5 3.0 30 372-401 4-33 (47)
8 1whc_A RSGI RUH-027, UBA/UBX 3 45.9 24 0.00081 26.2 4.2 29 374-402 6-34 (64)
9 2g3q_A Protein YBL047C; endocy 44.9 14 0.00049 24.9 2.6 27 376-402 3-29 (43)
10 2dag_A Ubiquitin carboxyl-term 42.9 20 0.0007 27.4 3.4 28 375-402 7-34 (74)
11 2dak_A Ubiquitin carboxyl-term 41.6 23 0.0008 26.0 3.5 44 374-424 6-49 (63)
12 1ify_A HHR23A, UV excision rep 37.0 17 0.00057 25.5 2.0 30 373-402 4-33 (49)
13 1wji_A Tudor domain containing 36.4 37 0.0013 25.1 3.9 28 375-402 7-34 (63)
14 1z96_A DNA-damage, UBA-domain 33.8 34 0.0012 22.2 3.0 24 378-401 5-28 (40)
15 3ff5_A PEX14P, peroxisomal bio 33.2 35 0.0012 24.7 3.1 24 377-400 30-53 (54)
16 2cpw_A CBL-interacting protein 32.9 31 0.001 25.6 2.9 27 376-402 18-44 (64)
17 2juj_A E3 ubiquitin-protein li 28.9 50 0.0017 24.0 3.3 25 377-401 7-31 (56)
18 1vek_A UBP14, ubiquitin-specif 28.8 45 0.0015 26.1 3.4 30 373-402 25-54 (84)
19 1wiv_A UBP14, ubiquitin-specif 27.6 51 0.0017 25.1 3.4 30 373-402 25-54 (73)
20 2dai_A Ubadc1, ubiquitin assoc 26.4 54 0.0018 25.6 3.5 26 376-401 28-53 (83)
21 2w84_A Peroxisomal membrane pr 26.1 60 0.002 24.8 3.5 25 377-401 35-59 (70)
22 2oo9_A E3 ubiquitin-protein li 26.0 57 0.002 22.8 3.1 24 378-401 5-28 (46)
23 2ooa_A E3 ubiquitin-protein li 23.9 71 0.0024 22.9 3.3 26 375-401 10-35 (52)
24 3sf5_B Urease accessory protei 23.2 4.6E+02 0.016 24.4 14.1 67 211-279 65-139 (265)
25 3jv1_A P22 protein; MAM33 fami 21.1 65 0.0022 28.7 3.4 38 368-405 125-166 (182)
26 1vg5_A RSGI RUH-014, rhomboid 20.3 1.1E+02 0.0037 23.4 4.0 30 373-402 25-54 (73)
27 1msk_A Cobalamin-dependent met 20.1 62 0.0021 31.9 3.2 54 336-399 265-323 (331)
28 1yqf_A Hypothetical protein LM 20.0 70 0.0024 29.0 3.4 37 368-404 146-186 (203)
No 1
>1vh4_A SUFD protein; structural genomics, protein binding protein; 1.75A {Escherichia coli} SCOP: b.80.6.1 PDB: 2zu0_A*
Probab=100.00 E-value=2.2e-79 Score=637.00 Aligned_cols=348 Identities=24% Similarity=0.344 Sum_probs=314.5
Q ss_pred hhHHHHHHHHHHHhHcCCCCCCCCCCCCCcchhhhhhcCCCCCCCCCC-----CCCCCCCCCcceEEEECCEEcccccCC
Q 013853 71 LPLQKLRDSSSQTLLSTPWPSRKDEPFRFTDTSMIKSSQIQPITRPSS-----SLDVSTDAQFPSLVLIDGFIQNSALNL 145 (435)
Q Consensus 71 ~~l~~~R~~A~~~~~~~g~P~~k~E~wkyT~l~~l~~~~~~p~~~~~~-----~~~~~~~~~~~~lvfvnG~~~~~ls~~ 145 (435)
.||.++|++||+.|.++|||++|.|+||||||+.+....+.+...... ...++ .+.. ++||+||.|.+.+++.
T Consensus 25 ~~l~~~R~~a~~~~~~~~~P~~~~e~w~~t~l~~l~~~~~~~~~~~~~~~~i~~~~~~-~~~~-~~v~v~g~~~~~ls~~ 102 (435)
T 1vh4_A 25 TKRSPQAQQHLQQLLRTGLPTRKHENWKYTPLEGLINSQFVSIAGEISPQQRDALALT-LDSV-RLVFVDGRYVPALSDA 102 (435)
T ss_dssp -CCCHHHHHHHHHHHHHCCCCTTSTTCTTCCCHHHHTSCEECCCCCCCHHHHHHHCCC-CCSE-EEEEETTEECGGGSCC
T ss_pred chhHHHHHHHHHHHHhCCCCCCCccccccCchHHhhcccccccccccChhHHhhhcCc-cCce-EEEEECCEEeeecccc
Confidence 579999999999999999999999999999999998876544321111 01122 2344 4999999999988762
Q ss_pred CCCCCCeEEEecccCchhHHHHhhccccccccCchHHHhhhccCCCceEEEecC--------------C-CC--------
Q 013853 146 SNLPDGVYVGSLLGVSDGIMKRVSDFISEFQCGDLFWSINGMGAPDLGVIYVPA--------------E-GN-------- 202 (435)
Q Consensus 146 ~~lp~Gv~v~~l~~a~~~~~~~~~~~~~~~~~~d~f~aLN~a~~~dg~~i~Vp~--------------~-~~-------- 202 (435)
.+|+||+|+++.+ ++|++.... .|+|++||+|++++|+|||||+ . .+
T Consensus 103 -~~~~Gv~~~~~~~------~~~~~~~~~---~~~f~aln~a~~~~G~~i~Vp~g~~~~~Pi~l~~~~~~~~~~~~~~~~ 172 (435)
T 1vh4_A 103 -TEGSGYEVSINDD------RQGLPDAIQ---AEVFLHLTESLAQSVTHIAVKRGQRPAKPLLLMHITQGVAGEEVNTAH 172 (435)
T ss_dssp -CTTSSCEEEEESC------CTTCCCCSS---CCHHHHHHHHHCSCEEEEEECTTCCCSSCEEEEEEECCCSSSCEEEEE
T ss_pred -ccCCCeEEEecch------hhhhhcccC---chHHHHHHHHhcCCcEEEEECCCCEecccEEEEEEecCCcccccceee
Confidence 3689999999987 457665432 3999999999999999999999 1 11
Q ss_pred ------------------------cceeeeeEEEEEEcCCCEEEEEEEEecCCCcEEEEeEEEEEecCcEEEEEEEEeCC
Q 013853 203 ------------------------DCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTGG 258 (435)
Q Consensus 203 ------------------------~~~~~n~v~ei~v~~~A~l~~~~iq~~~~~~~~~~~~~v~~~~~s~~~~~~i~~Gg 258 (435)
..+++|+++||++++||+|+|+++|+|+.+++++.++++.++++|+++|+.+.+|+
T Consensus 173 ~r~lIi~eegs~v~iie~~~~~~~~~~~~~~v~ei~v~~~A~l~~~~vq~~~~~~~~~~~~~~~~~~~a~~~~~~~~~G~ 252 (435)
T 1vh4_A 173 YRHHLDLAEGAEATVIEHFVSLNDARHFTGARFTINVAANAHLQHIKLAFENPLSHHFAHNDLLLAEDATAFSHSFLLGG 252 (435)
T ss_dssp EEEEEEECTTCEEEEEEEEEESSSSCEEEEEEEEEEECTTCEEEEEEEECCCTTCEEEEEEEEEECTTCEEEEEEEECCC
T ss_pred eEEEEEECCCCEEEEEEEeccCCcccceeeeEEEEEECCCCEEEEEEEEecCCCeEEEEEEEEEECCCCEEEEEEEEECC
Confidence 12489999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeEEEEeCCCcEEEEEEEEEecCCceEeeeeEEEEecCcceeeEEEEEEEecCCceEEEEEEEEEccCCccCceE
Q 013853 259 KLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNRYAQQTDAG 338 (435)
Q Consensus 259 ~~~r~~~~~~l~G~~a~~~~~g~~l~~~~q~~D~~t~i~h~~p~t~S~~~~k~Il~~d~s~~vf~G~I~V~~~Aq~t~a~ 338 (435)
+++|+++.+.|.|++|.++++|++++.++|++|+++.|+|.+|+|+|++++|||+. |+|+++|+|+|+|.++|++|+|+
T Consensus 253 ~~~~~~~~~~L~G~~a~~~~~~~~~~~~~q~~D~~~~v~H~~~~t~S~i~~kgil~-d~s~~vf~G~i~v~~~A~~t~a~ 331 (435)
T 1vh4_A 253 AVLRHNTSTQLNGENSTLRINSLAMPVKNEVCDTRTWLEHNKGFCNSRQLHKTIVS-DKGRAVFNGLINVAQHAIKTDGQ 331 (435)
T ss_dssp SEEEEEEEEEECSTTCEEEEEEEECCCTTCEEEEEEEEEECSSSCEEEEEEEEEEC-TTCEEEEEEEEEECTTCTTEEEE
T ss_pred ceEEEeeEEEEEcCCCEEEEEEEEEccCCEEEEeeEEEEEecCCcEEEEEEEEEEc-CCCeEEEEEEEEEecCCCCCeeE
Confidence 99999999999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred EEeceEEeCCCceeeeeeeEEEEcCCeeeeeeeeccCCChhhHHHHHhcCCCHHHHHHHHHHhhHHHHHhcCCChhHHHH
Q 013853 339 QLTRSLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEESQLFYFQARGIDLETARKALVFSFGAEVIERFPYPSIRNQ 418 (435)
Q Consensus 339 q~~~~LLLs~~A~~~s~P~LeI~adDVkcsHgATvG~iDeeqLFYL~SRGI~e~eA~~LLi~gFl~evi~~ip~e~lr~~ 418 (435)
|.|++||||++|+++|+|+|||++|||+|+||||||+||+|||||||||||++++|++|||+||+.+++++||+|.+|++
T Consensus 332 ~~~~~LlLs~~a~~~t~P~LeI~~dDV~~~H~AtvG~ideeqLFYL~SRGi~e~eA~~Liv~gF~~~vi~~i~~e~l~~~ 411 (435)
T 1vh4_A 332 MTNNNLLMGKLAEVDTKPQLEIYADDVKCSHGATVGRIDDEQIFYLRSRGINQQDAQQMIIYAFAAELTEALRDEGLKQQ 411 (435)
T ss_dssp EEEEEEECSTTCEEEEEEEEEECCSSEEEEEEEEEECCCHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred EEeeeEEccCCCcEEeeeeEEEEcCCEEEEeeeecCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccc
Q 013853 419 VVSHVKNLMGTTD 431 (435)
Q Consensus 419 l~~~i~~~l~~~~ 431 (435)
|.+.|+.+|....
T Consensus 412 l~~~i~~~l~~~~ 424 (435)
T 1vh4_A 412 VLARIGQRLPGGA 424 (435)
T ss_dssp HHHHHHTTSTTC-
T ss_pred HHHHHHHHhhccc
Confidence 9999999997643
No 2
>4dn7_A ABC transporter, ATP-binding protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: 1PE; 1.60A {Methanosarcina maze}
Probab=100.00 E-value=1.8e-64 Score=522.72 Aligned_cols=290 Identities=19% Similarity=0.231 Sum_probs=265.2
Q ss_pred eEEEECCEEcccccCCCCCCCCeEEEecccCch--hHHHHhhccccccccCchHHHhhhccCCCceEEEecC--------
Q 013853 130 SLVLIDGFIQNSALNLSNLPDGVYVGSLLGVSD--GIMKRVSDFISEFQCGDLFWSINGMGAPDLGVIYVPA-------- 199 (435)
Q Consensus 130 ~lvfvnG~~~~~ls~~~~lp~Gv~v~~l~~a~~--~~~~~~~~~~~~~~~~d~f~aLN~a~~~dg~~i~Vp~-------- 199 (435)
..+++|........ .|+||+|+++++|.. +++++|+++..... +|+|++||+|++++|+|||||+
T Consensus 92 ~~~q~d~~~v~~~~----~~~GV~~~~l~~Al~~~~lv~~y~~~~v~~~-~d~f~Aln~A~~~~G~fI~Vp~gv~~~~Pi 166 (429)
T 4dn7_A 92 SFLVLDNAVSHSTL----KDKNVELMSTHKAMEKYEWLKDYSWKLVQVD-ADKYTAKTYLEDADGYFIRVPAGKKTSMPV 166 (429)
T ss_dssp EEEEETTEEEEEEE----SSSSSEEEEHHHHHHHCGGGGGTTTTSSCTT-SSHHHHHHHHTTCBCEEEEECTTCBCSSCE
T ss_pred eEEEEcCceEEEee----cCCCEEEEcHHHHhhhhHHHHHHHhccCCCC-cCHHHHHHHhhCCCcEEEEECCCcEEEEEE
Confidence 36889976655322 268999999999864 57888998866543 7999999999999999999999
Q ss_pred ------------------------------------CCCcceeeeeEEEEEEcCCCEEEEEEEEecCCCcEEEEeEEEEE
Q 013853 200 ------------------------------------EGNDCYWANSVLEVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQ 243 (435)
Q Consensus 200 ------------------------------------~~~~~~~~n~v~ei~v~~~A~l~~~~iq~~~~~~~~~~~~~v~~ 243 (435)
...+.+++|+++||++++||+|+|+++|+|+.+.+++.++++.+
T Consensus 167 ~~~~~i~~~~~~~~~r~lIi~eegA~v~iie~c~~~~~~~~~lh~~v~Ei~v~~~A~l~~~~vq~~~~~~~~~~~~~~~~ 246 (429)
T 4dn7_A 167 QTCLMLGSKKAAQTVHNIIIVEEGATLDIITGCTTKKGVEEGLHLGISEMYIKKGGTLNFTMIHNWAEQIGVRPRTVVSV 246 (429)
T ss_dssp EEEEEECSSSEEEEEEEEEEECTTCEEEEEEEEEECTTCCEEEEEEEEEEEECTTCEEEEEEEECCCTEEEEEEEEEEEE
T ss_pred EEEEEEcCCccceeeeEEEEECCCCEEEEEEEecCCCCcccceEEEEEEEEECCCCEEEEEEEeecCCCcEEecceeEEE
Confidence 01134799999999999999999999999999999999999999
Q ss_pred ecCcEEEEEEEEeCC-eEEEEEeEEEEeCCCcEEEEEEEEEecCCceEeeeeEEEEecCcceeeEEEEEEEecCCceEEE
Q 013853 244 ETASGYELVEVSTGG-KLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVF 322 (435)
Q Consensus 244 ~~~s~~~~~~i~~Gg-~~~r~~~~~~l~G~~a~~~~~g~~l~~~~q~~D~~t~i~h~~p~t~S~~~~k~Il~~d~s~~vf 322 (435)
+++|.|.+..+.+|| ...+.++.+.|.|++|.++++|++++.++|++|+++.|.|.+|+|+|++++|||+. +|+.+|
T Consensus 247 ~~~a~~~~~~v~~~g~~~~~~~~~~~L~Ge~A~~~~~~v~l~~g~q~~D~~t~v~H~gp~t~S~i~~k~V~~--~s~~vf 324 (429)
T 4dn7_A 247 EEGGTYVSNYICLKPVRSVQTYPTVRLEGEGAVTRLNTIAIAHPGSELDLGSKAIFNAPGTRAELISRTITI--GGRLIA 324 (429)
T ss_dssp CTTCEEEEEEEECSCCSEEEECCEEEECSTTCEEEEEEEEEECTTCEEEEEEEEEECSTTCEEEEEEEEEES--SSEEEE
T ss_pred CCCcEEEEEEEEecCceEEeeeeeEEEecCCcEEEEEEEEecCCceEEEEEEEEEEecCCcEEEEEeeEEEe--ccEEEE
Confidence 999999999999986 56677788999999999999999999999999999999999999999999999998 899999
Q ss_pred EEEEEEccCCccCceEEEeceEEeCCCceeeeeeeEEEEcCCeeeeeeeeccCCChhhHHHHHhcCCCHHHHHHHHHHhh
Q 013853 323 DGNVKVNRYAQQTDAGQLTRSLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEESQLFYFQARGIDLETARKALVFSF 402 (435)
Q Consensus 323 ~G~I~V~~~Aq~t~a~q~~~~LLLs~~A~~~s~P~LeI~adDVkcsHgATvG~iDeeqLFYL~SRGI~e~eA~~LLi~gF 402 (435)
+|.|. ++|++|+|+|.|++||||++|+++|+|+|||++|||+|+||||||+||+|||||||||||++++|++|||+||
T Consensus 325 rG~I~--~~A~~t~~~q~~~~LLLsd~A~~~t~P~LeI~~dDV~~~HgATvG~IdeeqLFYL~SRGIse~eA~~LIV~GF 402 (429)
T 4dn7_A 325 RGEMI--GNAKGAKGHLECKGLVLTDKGSQLAIPILEANVDDIELTHEAAVGKIAKDQVEYLMARGLTEDEAVGMIIRGF 402 (429)
T ss_dssp EEEEE--ECSTTEEEEEEEEEEECSSSCEEEEEEEEEECSSSEEEEEEEEEECCCHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred eeeEe--cCCcCceeEEEeeeEEecCCceEEeeeEEEEEcCCeEEEeccccCCCCHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99986 7899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHhhcc
Q 013853 403 GAEVIERFPYPSIRNQVVSHVKNLMGT 429 (435)
Q Consensus 403 l~evi~~ip~e~lr~~l~~~i~~~l~~ 429 (435)
+.+++++|| +++++.+.+.|+..+..
T Consensus 403 l~evi~~lp-~e~~~el~~li~~~~~g 428 (429)
T 4dn7_A 403 LDVGIRGIP-EELKEEIENTIAQTALG 428 (429)
T ss_dssp HHGGGTTSC-GGGHHHHHHHHHHHHHT
T ss_pred HHHHHHhCC-HHHHHHHHHHHHHHhcC
Confidence 999999999 56999999999887753
No 3
>1vh4_A SUFD protein; structural genomics, protein binding protein; 1.75A {Escherichia coli} SCOP: b.80.6.1 PDB: 2zu0_A*
Probab=97.54 E-value=0.014 Score=60.30 Aligned_cols=147 Identities=8% Similarity=0.005 Sum_probs=105.1
Q ss_pred EEEEEEcCCCEEEEEEEEec--CCCcEEEEeEEEEEecCcEEEEEEEEe-CCe-EEEEEeEEEEeCCCcEEEEEEEEEec
Q 013853 210 VLEVVIGKGGKVRHSYLQNQ--SLNAAHIKWTAVRQETASGYELVEVST-GGK-LSRHNVHVQQLGPDTETELSSFHLLV 285 (435)
Q Consensus 210 v~ei~v~~~A~l~~~~iq~~--~~~~~~~~~~~v~~~~~s~~~~~~i~~-Gg~-~~r~~~~~~l~G~~a~~~~~g~~l~~ 285 (435)
.+-|++++||+++++.-... .....|-..+.+.++++|++++..+.. +.. .......+ ..|++|..+...+.++.
T Consensus 174 r~lIi~eegs~v~iie~~~~~~~~~~~~~~v~ei~v~~~A~l~~~~vq~~~~~~~~~~~~~~-~~~~~a~~~~~~~~~G~ 252 (435)
T 1vh4_A 174 RHHLDLAEGAEATVIEHFVSLNDARHFTGARFTINVAANAHLQHIKLAFENPLSHHFAHNDL-LLAEDATAFSHSFLLGG 252 (435)
T ss_dssp EEEEEECTTCEEEEEEEEEESSSSCEEEEEEEEEEECTTCEEEEEEEECCCTTCEEEEEEEE-EECTTCEEEEEEEECCC
T ss_pred EEEEEECCCCEEEEEEEeccCCcccceeeeEEEEEECCCCEEEEEEEEecCCCeEEEEEEEE-EECCCCEEEEEEEEECC
Confidence 35589999999988733222 234577777889999999999999876 332 23333343 46999999988888876
Q ss_pred CCceEeeeeEEEEecCcceeeEEEEEEEecCCceEEEEEEEEEccCCccCceEEEeceEEeCCCceeeeeeeEEEEcC
Q 013853 286 SDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNRYAQQTDAGQLTRSLLLEPRATVNVKPNLQIIAD 363 (435)
Q Consensus 286 ~~q~~D~~t~i~h~~p~t~S~~~~k~Il~~d~s~~vf~G~I~V~~~Aq~t~a~q~~~~LLLs~~A~~~s~P~LeI~ad 363 (435)
+-.+.+. .+.+.|+++.++.....+.. ++. ..+=...|.-.+.+|.+.+..++++.+ +|+..-.-.+.|..+
T Consensus 253 ~~~~~~~--~~~L~G~~a~~~~~~~~~~~-~~q--~~D~~~~v~H~~~~t~S~i~~kgil~d-~s~~vf~G~i~v~~~ 324 (435)
T 1vh4_A 253 AVLRHNT--STQLNGENSTLRINSLAMPV-KNE--VCDTRTWLEHNKGFCNSRQLHKTIVSD-KGRAVFNGLINVAQH 324 (435)
T ss_dssp SEEEEEE--EEEECSTTCEEEEEEEECCC-TTC--EEEEEEEEEECSSSCEEEEEEEEEECT-TCEEEEEEEEEECTT
T ss_pred ceEEEee--EEEEEcCCCEEEEEEEEEcc-CCE--EEEeeEEEEEecCCcEEEEEEEEEEcC-CCeEEEEEEEEEecC
Confidence 6566564 57788998777766555555 444 444444456778999999999999886 689888888888433
No 4
>4dn7_A ABC transporter, ATP-binding protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: 1PE; 1.60A {Methanosarcina maze}
Probab=97.19 E-value=0.13 Score=52.96 Aligned_cols=145 Identities=9% Similarity=0.004 Sum_probs=100.7
Q ss_pred eEEEEEEcCCCEEEEEEEEec---CCCcEEEEeEEEEEecCcEEEEEEEEeCCeEEEE-EeEEEEeCCCcEEEEEEEEEe
Q 013853 209 SVLEVVIGKGGKVRHSYLQNQ---SLNAAHIKWTAVRQETASGYELVEVSTGGKLSRH-NVHVQQLGPDTETELSSFHLL 284 (435)
Q Consensus 209 ~v~ei~v~~~A~l~~~~iq~~---~~~~~~~~~~~v~~~~~s~~~~~~i~~Gg~~~r~-~~~~~l~G~~a~~~~~g~~l~ 284 (435)
..+-|.+++||+++++.-... .....|...+.+.++++|++++..+...+.-..+ .......|++|....+.+.++
T Consensus 181 ~r~lIi~eegA~v~iie~c~~~~~~~~~lh~~v~Ei~v~~~A~l~~~~vq~~~~~~~~~~~~~~~~~~~a~~~~~~v~~~ 260 (429)
T 4dn7_A 181 VHNIIIVEEGATLDIITGCTTKKGVEEGLHLGISEMYIKKGGTLNFTMIHNWAEQIGVRPRTVVSVEEGGTYVSNYICLK 260 (429)
T ss_dssp EEEEEEECTTCEEEEEEEEEECTTCCEEEEEEEEEEEECTTCEEEEEEEECCCTEEEEEEEEEEEECTTCEEEEEEEECS
T ss_pred eeEEEEECCCCEEEEEEEecCCCCcccceEEEEEEEEECCCCEEEEEEEeecCCCcEEecceeEEECCCcEEEEEEEEec
Confidence 446788999999998753222 2346777888999999999999999864332222 222334689998877777776
Q ss_pred cCCceEeeeeEEEEecCcceeeEEEEEEEecCCceEEEEEEEEEccCCccCceEEEeceEEeCCCceeeeeeeEE
Q 013853 285 VSDQTQDLHSRLLLDHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNRYAQQTDAGQLTRSLLLEPRATVNVKPNLQ 359 (435)
Q Consensus 285 ~~~q~~D~~t~i~h~~p~t~S~~~~k~Il~~d~s~~vf~G~I~V~~~Aq~t~a~q~~~~LLLs~~A~~~s~P~Le 359 (435)
.. ........+.+.|+++.++.....+.. ++. ..+=...|.-.+.+|.+.+..++++. ++++.-...+.
T Consensus 261 g~-~~~~~~~~~~L~Ge~A~~~~~~v~l~~-g~q--~~D~~t~v~H~gp~t~S~i~~k~V~~--~s~~vfrG~I~ 329 (429)
T 4dn7_A 261 PV-RSVQTYPTVRLEGEGAVTRLNTIAIAH-PGS--ELDLGSKAIFNAPGTRAELISRTITI--GGRLIARGEMI 329 (429)
T ss_dssp CC-SEEEECCEEEECSTTCEEEEEEEEEEC-TTC--EEEEEEEEEECSTTCEEEEEEEEEES--SSEEEEEEEEE
T ss_pred Cc-eEEeeeeeEEEecCCcEEEEEEEEecC-Cce--EEEEEEEEEEecCCcEEEEEeeEEEe--ccEEEEeeeEe
Confidence 33 334444467888998888766666555 444 44444445677889999999999998 78877776554
No 5
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=55.95 E-value=8.6 Score=28.73 Aligned_cols=32 Identities=31% Similarity=0.147 Sum_probs=27.9
Q ss_pred eeccCCChhhHHHHHhcCCCHHHHHHHHHHhh
Q 013853 371 AAISDLEESQLFYFQARGIDLETARKALVFSF 402 (435)
Q Consensus 371 ATvG~iDeeqLFYL~SRGI~e~eA~~LLi~gF 402 (435)
+--|+.|++.|.-|++.|++++.|++.|....
T Consensus 3 ~~~~~~~e~~v~~L~~MGF~~~~a~~AL~~t~ 34 (64)
T 2crn_A 3 SGSSGSSPSLLEPLLAMGFPVHTALKALAATG 34 (64)
T ss_dssp CSSCCCSCSSHHHHHHTSCCHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 34578899999999999999999999998653
No 6
>3ic3_A Putative pyruvate dehydrogenase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE BGC; 1.80A {Rhodopseudomonas palustris}
Probab=51.84 E-value=12 Score=30.54 Aligned_cols=27 Identities=22% Similarity=0.207 Sum_probs=24.1
Q ss_pred HHHHhcCCCHHHHHHHHHHhhHHHHHh
Q 013853 382 FYFQARGIDLETARKALVFSFGAEVIE 408 (435)
Q Consensus 382 FYL~SRGI~e~eA~~LLi~gFl~evi~ 408 (435)
=|-++.|+++++|...|+.||-.|+-+
T Consensus 63 a~a~~~~~s~~eal~rI~egF~~El~~ 89 (101)
T 3ic3_A 63 SYARESEYTEDEALERIVEMFEAELSR 89 (101)
T ss_dssp HHHHTSSCCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhcC
Confidence 477999999999999999999988654
No 7
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.45 E-value=14 Score=25.50 Aligned_cols=30 Identities=27% Similarity=0.271 Sum_probs=26.0
Q ss_pred eccCCChhhHHHHHhcCCCHHHHHHHHHHh
Q 013853 372 AISDLEESQLFYFQARGIDLETARKALVFS 401 (435)
Q Consensus 372 TvG~iDeeqLFYL~SRGI~e~eA~~LLi~g 401 (435)
+-..+|++.|--|++-|+++++|++.|...
T Consensus 4 ~~~~~~~~~v~~L~~MGF~~~~a~~AL~~~ 33 (47)
T 2ekk_A 4 GSSGVNQQQLQQLMDMGFTREHAMEALLNT 33 (47)
T ss_dssp CCCSSCHHHHHHHHHHHCCHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 345789999999999999999999988764
No 8
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=45.85 E-value=24 Score=26.19 Aligned_cols=29 Identities=28% Similarity=0.166 Sum_probs=26.0
Q ss_pred cCCChhhHHHHHhcCCCHHHHHHHHHHhh
Q 013853 374 SDLEESQLFYFQARGIDLETARKALVFSF 402 (435)
Q Consensus 374 G~iDeeqLFYL~SRGI~e~eA~~LLi~gF 402 (435)
..+|++.|--|++-|++++.|++.|...+
T Consensus 6 ~~~~~~~v~~L~~MGF~~~~a~~AL~~t~ 34 (64)
T 1whc_A 6 SGAELTALESLIEMGFPRGRAEKALALTG 34 (64)
T ss_dssp CCCCCCHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 36899999999999999999999998664
No 9
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=44.94 E-value=14 Score=24.85 Aligned_cols=27 Identities=19% Similarity=0.043 Sum_probs=23.0
Q ss_pred CChhhHHHHHhcCCCHHHHHHHHHHhh
Q 013853 376 LEESQLFYFQARGIDLETARKALVFSF 402 (435)
Q Consensus 376 iDeeqLFYL~SRGI~e~eA~~LLi~gF 402 (435)
.+++.+--|++-|+++++|++.|-...
T Consensus 3 p~e~~i~~L~~MGF~~~~a~~AL~~~~ 29 (43)
T 2g3q_A 3 PKSLAVEELSGMGFTEEEAHNALEKCN 29 (43)
T ss_dssp HHHHHHHHHHTTTSCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 368899999999999999998877643
No 10
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.86 E-value=20 Score=27.42 Aligned_cols=28 Identities=25% Similarity=0.452 Sum_probs=25.7
Q ss_pred CCChhhHHHHHhcCCCHHHHHHHHHHhh
Q 013853 375 DLEESQLFYFQARGIDLETARKALVFSF 402 (435)
Q Consensus 375 ~iDeeqLFYL~SRGI~e~eA~~LLi~gF 402 (435)
.+|++.|--|++-|++++.|++.|....
T Consensus 7 ~~~e~~v~~L~~MGF~~~~a~~AL~~t~ 34 (74)
T 2dag_A 7 GLDESVIIQLVEMGFPMDACRKAVYYTG 34 (74)
T ss_dssp SSCHHHHHHHHHHSCCHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 5899999999999999999999998765
No 11
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.63 E-value=23 Score=26.01 Aligned_cols=44 Identities=20% Similarity=0.169 Sum_probs=32.8
Q ss_pred cCCChhhHHHHHhcCCCHHHHHHHHHHhhHHHHHhcCCChhHHHHHHHHHH
Q 013853 374 SDLEESQLFYFQARGIDLETARKALVFSFGAEVIERFPYPSIRNQVVSHVK 424 (435)
Q Consensus 374 G~iDeeqLFYL~SRGI~e~eA~~LLi~gFl~evi~~ip~e~lr~~l~~~i~ 424 (435)
...|++.|--|++-|+++++|++.|....- ..|..-++|...+.
T Consensus 6 ~~~~~~~v~~L~~MGF~~~~a~~AL~~t~~-------nve~A~e~L~~~~~ 49 (63)
T 2dak_A 6 SGPPEDCVTTIVSMGFSRDQALKALRATNN-------SLERAVDWIFSHID 49 (63)
T ss_dssp CCCCHHHHHHHHHHTCCHHHHHHHHHHTTS-------CSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHcCCCHHHHHHHHHHcCC-------CHHHHHHHHHhCCC
Confidence 368999999999999999999999887542 23445555554443
No 12
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=37.03 E-value=17 Score=25.50 Aligned_cols=30 Identities=23% Similarity=0.161 Sum_probs=26.2
Q ss_pred ccCCChhhHHHHHhcCCCHHHHHHHHHHhh
Q 013853 373 ISDLEESQLFYFQARGIDLETARKALVFSF 402 (435)
Q Consensus 373 vG~iDeeqLFYL~SRGI~e~eA~~LLi~gF 402 (435)
.|.-+++++--|++-|+++++|+..|-..+
T Consensus 4 ~~~~~~~~i~~L~~MGF~~~~a~~AL~~~~ 33 (49)
T 1ify_A 4 TGSEYETMLTEIMSMGYERERVVAALRASY 33 (49)
T ss_dssp CSHHHHHHHHHHHHTTCCHHHHHHHHHTTT
T ss_pred CCccCHHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 466788999999999999999999987655
No 13
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=36.36 E-value=37 Score=25.11 Aligned_cols=28 Identities=25% Similarity=0.271 Sum_probs=24.6
Q ss_pred CCChhhHHHHHhcCCCHHHHHHHHHHhh
Q 013853 375 DLEESQLFYFQARGIDLETARKALVFSF 402 (435)
Q Consensus 375 ~iDeeqLFYL~SRGI~e~eA~~LLi~gF 402 (435)
.+|++.|--|++.|+++++|++.|....
T Consensus 7 ~~~~~~I~~L~~MGF~~~~a~~AL~~~~ 34 (63)
T 1wji_A 7 GVDEKALKHITEMGFSKEASRQALMDNG 34 (63)
T ss_dssp SSCHHHHHHHHTTTCCHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 4799999999999999999988876654
No 14
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=33.78 E-value=34 Score=22.22 Aligned_cols=24 Identities=25% Similarity=0.224 Sum_probs=20.5
Q ss_pred hhhHHHHHhcCCCHHHHHHHHHHh
Q 013853 378 ESQLFYFQARGIDLETARKALVFS 401 (435)
Q Consensus 378 eeqLFYL~SRGI~e~eA~~LLi~g 401 (435)
++++--|++.|+++++|++.|...
T Consensus 5 ~~~i~~L~~mGf~~~~a~~AL~~~ 28 (40)
T 1z96_A 5 NSKIAQLVSMGFDPLEAAQALDAA 28 (40)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc
Confidence 568889999999999999887654
No 15
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=33.20 E-value=35 Score=24.73 Aligned_cols=24 Identities=13% Similarity=0.177 Sum_probs=19.8
Q ss_pred ChhhHHHHHhcCCCHHHHHHHHHH
Q 013853 377 EESQLFYFQARGIDLETARKALVF 400 (435)
Q Consensus 377 DeeqLFYL~SRGI~e~eA~~LLi~ 400 (435)
-+.++=||+|.||+.+|-..+|-+
T Consensus 30 ~~~K~~FL~sKGLt~~EI~~Al~r 53 (54)
T 3ff5_A 30 LATRRAFLKKKGLTDEEIDLAFQQ 53 (54)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHc
Confidence 356788999999999998887754
No 16
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=32.93 E-value=31 Score=25.60 Aligned_cols=27 Identities=26% Similarity=0.117 Sum_probs=24.3
Q ss_pred CChhhHHHHHhcCCCHHHHHHHHHHhh
Q 013853 376 LEESQLFYFQARGIDLETARKALVFSF 402 (435)
Q Consensus 376 iDeeqLFYL~SRGI~e~eA~~LLi~gF 402 (435)
.|++.|--|++-|+++++|++.|....
T Consensus 18 ~~e~~i~~L~~MGF~~~~a~~AL~~t~ 44 (64)
T 2cpw_A 18 KHGSALDVLLSMGFPRARAQKALASTG 44 (64)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHcC
Confidence 688999999999999999999987654
No 17
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=28.94 E-value=50 Score=24.02 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=21.4
Q ss_pred ChhhHHHHHhcCCCHHHHHHHHHHh
Q 013853 377 EESQLFYFQARGIDLETARKALVFS 401 (435)
Q Consensus 377 DeeqLFYL~SRGI~e~eA~~LLi~g 401 (435)
-++++=-|||-|.++++|++-|..+
T Consensus 7 ~e~~Ia~L~smGfsr~da~~AL~ia 31 (56)
T 2juj_A 7 LSSEIENLMSQGYSYQDIQKALVIA 31 (56)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHT
T ss_pred ChHHHHHHHHcCCCHHHHHHHHHHh
Confidence 3678999999999999999988643
No 18
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=28.80 E-value=45 Score=26.13 Aligned_cols=30 Identities=13% Similarity=0.040 Sum_probs=26.3
Q ss_pred ccCCChhhHHHHHhcCCCHHHHHHHHHHhh
Q 013853 373 ISDLEESQLFYFQARGIDLETARKALVFSF 402 (435)
Q Consensus 373 vG~iDeeqLFYL~SRGI~e~eA~~LLi~gF 402 (435)
.-..|++.|--|++-|++++.|++.|....
T Consensus 25 ~~~~~e~~v~~L~~MGF~~~~a~~AL~~t~ 54 (84)
T 1vek_A 25 QPVANEEIVAQLVSMGFSQLHCQKAAINTS 54 (84)
T ss_dssp CCCCCHHHHHHHHHHTCCHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHcCCCHHHHHHHHHHHc
Confidence 346799999999999999999999988664
No 19
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=27.59 E-value=51 Score=25.06 Aligned_cols=30 Identities=33% Similarity=0.296 Sum_probs=26.2
Q ss_pred ccCCChhhHHHHHhcCCCHHHHHHHHHHhh
Q 013853 373 ISDLEESQLFYFQARGIDLETARKALVFSF 402 (435)
Q Consensus 373 vG~iDeeqLFYL~SRGI~e~eA~~LLi~gF 402 (435)
...+++++|--|++-|+++++|++.|....
T Consensus 25 ~~~~~~~~v~~L~~MGF~~~~a~~AL~~t~ 54 (73)
T 1wiv_A 25 TSDIDQSSVDTLLSFGFAEDVARKALKASG 54 (73)
T ss_dssp SCSSCHHHHHHHHHHTCCHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 347999999999999999999999887654
No 20
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.41 E-value=54 Score=25.64 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=24.1
Q ss_pred CChhhHHHHHhcCCCHHHHHHHHHHh
Q 013853 376 LEESQLFYFQARGIDLETARKALVFS 401 (435)
Q Consensus 376 iDeeqLFYL~SRGI~e~eA~~LLi~g 401 (435)
+|++.|--|++-|++++.|++.|...
T Consensus 28 ~~e~~i~~L~~MGF~~~~a~~AL~~t 53 (83)
T 2dai_A 28 VDEAALRQLTEMGFPENRATKALQLN 53 (83)
T ss_dssp CCHHHHHHHHHHTCCHHHHHHHHHHT
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 69999999999999999999998765
No 21
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=26.07 E-value=60 Score=24.76 Aligned_cols=25 Identities=16% Similarity=0.208 Sum_probs=20.8
Q ss_pred ChhhHHHHHhcCCCHHHHHHHHHHh
Q 013853 377 EESQLFYFQARGIDLETARKALVFS 401 (435)
Q Consensus 377 DeeqLFYL~SRGI~e~eA~~LLi~g 401 (435)
-+.++=||++.||+.+|-..+|-++
T Consensus 35 ~~~K~~FL~sKGLt~eEI~~Al~ra 59 (70)
T 2w84_A 35 LATRRAFLKKKGLTDEEIDMAFQQS 59 (70)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 3577889999999999988887653
No 22
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=26.00 E-value=57 Score=22.81 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=20.5
Q ss_pred hhhHHHHHhcCCCHHHHHHHHHHh
Q 013853 378 ESQLFYFQARGIDLETARKALVFS 401 (435)
Q Consensus 378 eeqLFYL~SRGI~e~eA~~LLi~g 401 (435)
++.+=-|||-|.++++|++-|..+
T Consensus 5 e~~I~~L~s~Gf~~~~~~rAL~ia 28 (46)
T 2oo9_A 5 SSEIENLMSQGYSYQDIQKALVIA 28 (46)
T ss_dssp HHHHHHHHHTTBCHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh
Confidence 567888999999999999988644
No 23
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=23.94 E-value=71 Score=22.94 Aligned_cols=26 Identities=15% Similarity=0.422 Sum_probs=21.8
Q ss_pred CCChhhHHHHHhcCCCHHHHHHHHHHh
Q 013853 375 DLEESQLFYFQARGIDLETARKALVFS 401 (435)
Q Consensus 375 ~iDeeqLFYL~SRGI~e~eA~~LLi~g 401 (435)
.++ +++=-||+-|.++++|.+.|..+
T Consensus 10 ~~~-~~Ia~Lm~mGFsr~~ai~AL~~a 35 (52)
T 2ooa_A 10 NVD-AKIAKLMGEGYAFEEVKRALEIA 35 (52)
T ss_dssp -CH-HHHHHHHHTTCCHHHHHHHHHHT
T ss_pred ChH-HHHHHHHHcCCCHHHHHHHHHHh
Confidence 555 89999999999999999988643
No 24
>3sf5_B Urease accessory protein UREH; UREF, chaperone; 2.50A {Helicobacter pylori}
Probab=23.18 E-value=4.6e+02 Score=24.45 Aligned_cols=67 Identities=10% Similarity=0.066 Sum_probs=46.0
Q ss_pred EEEEEcCCCEEEEE-----EEEecCCCcEEEEeEEEEEecCcEEEEE---EEEeCCeEEEEEeEEEEeCCCcEEEEE
Q 013853 211 LEVVIGKGGKVRHS-----YLQNQSLNAAHIKWTAVRQETASGYELV---EVSTGGKLSRHNVHVQQLGPDTETELS 279 (435)
Q Consensus 211 ~ei~v~~~A~l~~~-----~iq~~~~~~~~~~~~~v~~~~~s~~~~~---~i~~Gg~~~r~~~~~~l~G~~a~~~~~ 279 (435)
.+|.+++||++... ++..... ......+.+.+++++.++|. .|.+.+..-+....++|. ++|..-+.
T Consensus 65 i~i~v~~ga~~~ltTqaatkvy~~~~-~~a~q~~~~~v~~ga~Le~lP~p~I~f~~a~~~~~~~v~L~-~~A~l~~~ 139 (265)
T 3sf5_B 65 VQLNIGPNCKLRITSQSFEKIHNTED-GFASRDMHIVVGENAFLDFAPFPLIPFENAHFKGNTTISLR-SSSQLLYS 139 (265)
T ss_dssp EEEEECTTCEEEEECCCCEEECCCTT-SCEEEEEEEEECTTCEEEECCCCEEECTTCEEEEEEEEEEC-TTCEEEEE
T ss_pred EEEEECCCCEEEEECcccceEEcCCC-CcEEEEEEEEECCCCEEEecCCCcEecCCCEEEEEEEEEEC-CCCEEEEE
Confidence 67889999999765 3333222 22345678889999999988 577777777777888875 55554443
No 25
>3jv1_A P22 protein; MAM33 family, hydrolase; 2.00A {Trypanosoma brucei} SCOP: d.25.1.0
Probab=21.06 E-value=65 Score=28.69 Aligned_cols=38 Identities=32% Similarity=0.396 Sum_probs=28.6
Q ss_pred eeeeeccCCChhh----HHHHHhcCCCHHHHHHHHHHhhHHH
Q 013853 368 SHGAAISDLEESQ----LFYFQARGIDLETARKALVFSFGAE 405 (435)
Q Consensus 368 sHgATvG~iDeeq----LFYL~SRGI~e~eA~~LLi~gFl~e 405 (435)
-.|--...||++- .=||..|||+.+-|.-|.-+....|
T Consensus 125 Y~GP~f~~LDe~Lq~~l~~yLeeRGI~~~la~fl~~y~~~KE 166 (182)
T 3jv1_A 125 YMGPDLADLEDHLVDSFTSYLSARGVNDTLANFIDQFSLWSE 166 (182)
T ss_dssp CCCCCGGGSCHHHHHHHHHHHHTTTCSHHHHHHHHHHHHHHH
T ss_pred ccCCCccccCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 3566667888753 4699999999999988777666543
No 26
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=20.29 E-value=1.1e+02 Score=23.36 Aligned_cols=30 Identities=23% Similarity=0.121 Sum_probs=26.3
Q ss_pred ccCCChhhHHHHHhcCCCHHHHHHHHHHhh
Q 013853 373 ISDLEESQLFYFQARGIDLETARKALVFSF 402 (435)
Q Consensus 373 vG~iDeeqLFYL~SRGI~e~eA~~LLi~gF 402 (435)
...-++++|--|+.-|+++++|+..|-..+
T Consensus 25 ~~~~~ee~I~~L~eMGF~r~~a~~AL~~~~ 54 (73)
T 1vg5_A 25 RVAASEEQIQKLVAMGFDRTQVEVALAAAD 54 (73)
T ss_dssp CSCCCHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred CCcccHHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 456778999999999999999999988765
No 27
>1msk_A Cobalamin-dependent methionine synthase; methyltransferase, transferase, methionine biosynthesis, vitamin B12; HET: SAM; 1.80A {Escherichia coli K12} SCOP: d.173.1.1
Probab=20.09 E-value=62 Score=31.89 Aligned_cols=54 Identities=24% Similarity=0.316 Sum_probs=40.6
Q ss_pred ceEEEeceEEeCCCceeeeeeeEEEEcCCeeeee----eeeccCCChhhH-HHHHhcCCCHHHHHHHHH
Q 013853 336 DAGQLTRSLLLEPRATVNVKPNLQIIADDVKCSH----GAAISDLEESQL-FYFQARGIDLETARKALV 399 (435)
Q Consensus 336 ~a~q~~~~LLLs~~A~~~s~P~LeI~adDVkcsH----gATvG~iDeeqL-FYL~SRGI~e~eA~~LLi 399 (435)
-|-..+.+.+|-+.+.+..+ ..+| =-+||+|++||+ =|-+-||++.++|++.|-
T Consensus 265 IGv~LTEs~~M~P~kSVSgi----------~f~hPea~YF~vg~i~~dq~~dya~rkg~~~~~~~~~l~ 323 (331)
T 1msk_A 265 TGMKLTESFAMWPGASVSGW----------YFSHPDSKYYAVAQIQRDQVEDYARRKGMSVTEVERWLA 323 (331)
T ss_dssp HCCEECTTCCEESSSEEEEE----------EBCCTTCCCCCCCCBCHHHHHHHHHHHTCCHHHHHHHHG
T ss_pred cCeEECcccCcCcccceEEE----------EEEcCCCCeeCCCccCHHHHHHHHHHcCCCHHHHHHHhh
Confidence 45566666777777766554 2344 446999999999 599999999999999873
No 28
>1yqf_A Hypothetical protein LMAJ011689; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.30A {Leishmania major} SCOP: d.25.1.1
Probab=20.04 E-value=70 Score=28.98 Aligned_cols=37 Identities=24% Similarity=0.486 Sum_probs=27.8
Q ss_pred eeeeeccCCChhh----HHHHHhcCCCHHHHHHHHHHhhHH
Q 013853 368 SHGAAISDLEESQ----LFYFQARGIDLETARKALVFSFGA 404 (435)
Q Consensus 368 sHgATvG~iDeeq----LFYL~SRGI~e~eA~~LLi~gFl~ 404 (435)
-.|.....||++- .=||..|||+.+-|.-|.-+....
T Consensus 146 Y~GP~F~~LDe~Lq~~l~~YLeeRGI~~~la~fl~~y~~~K 186 (203)
T 1yqf_A 146 YTGPLVHELDYDLLNCVMTYLEKRGVDEKLGEFVVLYSFWA 186 (203)
T ss_dssp CCCCCGGGSBHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHH
T ss_pred ccCCCcccCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 4455566888874 479999999999998776665543
Done!