Query 013855
Match_columns 435
No_of_seqs 304 out of 1949
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 18:22:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013855.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013855hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v5u_A Uncharacterized membran 100.0 4.2E-45 1.4E-49 364.7 26.5 274 103-424 6-282 (320)
2 3v5u_A Uncharacterized membran 99.6 1.8E-15 6.2E-20 150.8 12.7 118 298-420 4-122 (320)
3 2oar_A Large-conductance mecha 33.9 21 0.0007 31.9 2.4 32 355-386 31-69 (174)
4 3hzq_A Large-conductance mecha 12.9 3.5E+02 0.012 22.2 5.5 33 357-392 30-69 (114)
5 3o7q_A L-fucose-proton symport 11.0 4E+02 0.014 25.0 6.4 44 297-340 25-68 (438)
6 2kdc_A Diacylglycerol kinase; 10.5 4E+02 0.014 21.9 5.3 47 84-132 37-83 (121)
7 3lae_A UPF0053 protein HI0107; 9.5 1.3E+02 0.0044 22.6 1.7 16 133-148 36-51 (81)
8 3llb_A Uncharacterized protein 9.4 1.5E+02 0.005 22.4 2.0 16 133-148 36-51 (83)
9 1pw4_A Glycerol-3-phosphate tr 7.6 1.2E+03 0.043 21.4 20.3 32 320-353 274-306 (451)
10 2rk5_A Putative hemolysin; str 7.4 2E+02 0.0068 21.8 2.0 16 133-148 35-50 (87)
No 1
>3v5u_A Uncharacterized membrane protein MJ0091; lipid cubic phase, cation protein complex, sodium,calcium EX membrane protein; HET: OLC MYS 1PE; 1.90A {Methanocaldococcus jannaschii} PDB: 3v5s_A*
Probab=100.00 E-value=4.2e-45 Score=364.73 Aligned_cols=274 Identities=18% Similarity=0.184 Sum_probs=229.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chhhHHHHHhhc-ChhHHHHHHHHHhcCCcceeehhhhhHHHHHHHHH
Q 013855 103 GWVFFLSLLGITPLAERLGYATEQLTFFTG--ATVGGLLNATFG-NATELIISIYALKSGMIRVVQLSLLGSILSNMLLV 179 (435)
Q Consensus 103 ~~vF~~~~laIipla~~l~~ate~la~~~G--~~vgGll~at~G-n~pELivsi~Al~~g~~~iv~gsilGSil~NllLv 179 (435)
...|+.++++++++++++++++|++|+++| |.+.|++++++| |+||+++++.|..+|++|+++||++|||++|++++
T Consensus 6 ~~~l~~g~~~l~~~a~~lv~~~~~la~~lgis~~viGltiva~GTSlPEl~vsi~A~~~g~~diaiGnivGSni~nillv 85 (320)
T 3v5u_A 6 VGYFLLGLILLYYGSDWFVLGSERIARHFNVSNFVIGATVMAIGTSLPEILTSAYASYMHAPGISIGNAIGSCICNIGLV 85 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTBCHHHHHHTHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHcccHHHHHHHHHHhCCCCceeeeeecchHHHHHHHH
Confidence 456899999999999999999999999999 999999999999 79999999999999999999999999999999999
Q ss_pred HHHHHhhcceeeecceeEEehhhHHHHHHHHHHHHHHHHHHHHHhhhccccccCccccccchhHHHHHHHHHHHHHHHHH
Q 013855 180 LGCAFFCGGLICCKKEQVFNKASAVVNSGLLLMAVMGLVFPAVLHYTHTEVHFGKSELALSRFSSCIMLVAYGAYLFFQL 259 (435)
Q Consensus 180 lG~~~l~ggl~~~~~~q~f~~~~a~~~s~ll~la~~~LllP~~~~~~~~~~~~~~~~~~lSr~~siiLL~~Y~~yL~f~l 259 (435)
+|+|++++|++. ++.+.+ ...+++++++ ++++ +. .+. ++|++|++++..|+.|++|++
T Consensus 86 lG~~~li~p~~v---~~~~~~-----d~~~~l~~~~-~l~~--~~----------~~g-is~~~g~~Ll~~Y~~yl~~~~ 143 (320)
T 3v5u_A 86 LGLSAIISPIIV---DKNLQK-----NILVYLLFVI-FAAV--IG----------IDG-FSWIDGVVLLILFIIYLRWTV 143 (320)
T ss_dssp HHHHHHHSCBCC---CHHHHH-----HHHHHHHHHH-HHHH--HT----------TTC-BCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccccc---cHHHHH-----HHHHHHHHHH-HHHH--HH----------Hcc-cHHHHHHHHHHHHHHHHHHHH
Confidence 999999999764 222222 2333333332 2222 11 123 899999999999999999999
Q ss_pred HhcccccCCCccccccCCCCCCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHhHHHHHHhHHHHhhccCCCchhHhHHH
Q 013855 260 RGQTELYVPLSEDENQTGNDADHGGNHDDNEAPEISKWESLIWLAIMTAWISILSQYVVDAIEGASASWNIPISFISVIL 339 (435)
Q Consensus 260 ~th~~~f~~~~e~~~~~g~~~~~~~~~~~~e~~~~s~~~~i~~Lvi~~~~i~~~a~~LV~si~~i~~~~gis~~fiGlil 339 (435)
++|++. + + +++++++.+.++.+.+++++++++.++|+++|++++.+++.+|+|+.++|+++
T Consensus 144 ~~~~~~-----~------------~--~~~~~~~~~~~~~~~~l~~~l~~l~~~a~~lv~~~~~ia~~~gis~~~iGltl 204 (320)
T 3v5u_A 144 KNGSAE-----I------------E--ENNDKNNPSVVFSLVLLIIGLIGVLVGAELFVDGAKKIALALDISDKVIGFTL 204 (320)
T ss_dssp HHTBC--------------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHT
T ss_pred Hhcccc-----c------------c--cccccccccHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHhCCchHHHHHHH
Confidence 988741 1 1 11122356788899999999999999999999999999999999999999999
Q ss_pred HHhhhchhHHHHHHHHHHhCCCcchHHHHhhHHHHHHHHHHHHHHHHHHHhCCceeeccchHHHHHHHHHHHHHHHHHhc
Q 013855 340 LPIVGNAAEHASAIMFAMKDKLDISLGVAIGSSTQISMFGIPFCVVIGWIMGRPMDLNFQLFETATLFITVIVVAFFLQV 419 (435)
Q Consensus 340 lpivtn~pE~vtaI~~A~kgk~dlaig~~iGSsiq~~Lfv~P~~vligw~~g~pm~L~f~~fe~~~L~~svllv~~~~~d 419 (435)
+|++||+||+++++.+++||+.|+|+||++|||+||.++++|+..++ +|++++ .+|...++++.+++..+++|
T Consensus 205 va~gtslPE~~~sv~aa~~g~~~laig~iiGS~ifn~~~v~g~~~li-----~p~~~~--~~d~~~~l~~~~ll~~~~~~ 277 (320)
T 3v5u_A 205 VAFGTSLPELMVSLAAAKRNLGGMVLGNVIGSNIADIGGALAVGSLF-----MHLPAE--NVQMAVLVIMSLLLYLFAKY 277 (320)
T ss_dssp HHHHHTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTHHHHHHHH-----SCBCCC--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHcCCCcHHHHHHHhHHHHHHHHHHHHHHhh-----ccccch--HHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999887 577764 67775555555555557899
Q ss_pred CeEeE
Q 013855 420 CTFIT 424 (435)
Q Consensus 420 gksn~ 424 (435)
||.|+
T Consensus 278 ~~i~~ 282 (320)
T 3v5u_A 278 SKIGR 282 (320)
T ss_dssp SCBSH
T ss_pred CcCcH
Confidence 99885
No 2
>3v5u_A Uncharacterized membrane protein MJ0091; lipid cubic phase, cation protein complex, sodium,calcium EX membrane protein; HET: OLC MYS 1PE; 1.90A {Methanocaldococcus jannaschii} PDB: 3v5s_A*
Probab=99.62 E-value=1.8e-15 Score=150.76 Aligned_cols=118 Identities=16% Similarity=0.118 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhHHHHhhccCCCchhHhHHHHHhhhchhHHHHHHHHHHhCCCcchHHHHhhHHHHHHH
Q 013855 298 ESLIWLAIMTAWISILSQYVVDAIEGASASWNIPISFISVILLPIVGNAAEHASAIMFAMKDKLDISLGVAIGSSTQISM 377 (435)
Q Consensus 298 ~~i~~Lvi~~~~i~~~a~~LV~si~~i~~~~gis~~fiGlillpivtn~pE~vtaI~~A~kgk~dlaig~~iGSsiq~~L 377 (435)
..+.+++++++++..++++++++.+.+++++|+|+.++|++++|+|||+||+++++.+++||+.|+++||++|||++|.+
T Consensus 4 ~~~~~l~~g~~~l~~~a~~lv~~~~~la~~lgis~~viGltiva~GTSlPEl~vsi~A~~~g~~diaiGnivGSni~nil 83 (320)
T 3v5u_A 4 LGVGYFLLGLILLYYGSDWFVLGSERIARHFNVSNFVIGATVMAIGTSLPEILTSAYASYMHAPGISIGNAIGSCICNIG 83 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTBCHHHHHHTHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHcccHHHHHHHHHHhCCCCceeeeeecchHHHHHH
Confidence 35678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCceeeccc-hHHHHHHHHHHHHHHHHHhcC
Q 013855 378 FGIPFCVVIGWIMGRPMDLNFQ-LFETATLFITVIVVAFFLQVC 420 (435)
Q Consensus 378 fv~P~~vligw~~g~pm~L~f~-~fe~~~L~~svllv~~~~~dg 420 (435)
+++|++.++ .|+...-. ..+...+.++.++...+..||
T Consensus 84 lvlG~~~li-----~p~~v~~~~~~d~~~~l~~~~~l~~~~~~g 122 (320)
T 3v5u_A 84 LVLGLSAII-----SPIIVDKNLQKNILVYLLFVIFAAVIGIDG 122 (320)
T ss_dssp THHHHHHHH-----SCBCCCHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHH-----ccccccHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 999999988 34444211 134444444444444555666
No 3
>2oar_A Large-conductance mechanosensitive channel; stretch activated ION channel mechanosensitive, membrane protein; 3.50A {Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1
Probab=33.90 E-value=21 Score=31.85 Aligned_cols=32 Identities=22% Similarity=0.415 Sum_probs=21.7
Q ss_pred HHHhCC-CcchHHHHhhHHH---HHHH---HHHHHHHHH
Q 013855 355 FAMKDK-LDISLGVAIGSST---QISM---FGIPFCVVI 386 (435)
Q Consensus 355 ~A~kgk-~dlaig~~iGSsi---q~~L---fv~P~~vli 386 (435)
+++||+ +|+|+|++||++- -+++ ++.|++.++
T Consensus 31 Fi~RGNViDLAVgVIIGaAF~~IVtSlV~dIImPlIgl~ 69 (174)
T 2oar_A 31 FLARGNIVDLAVAVVIGTAFTALVTKFTDSIITPLINRI 69 (174)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Confidence 556665 7999999999963 3333 357876543
No 4
>3hzq_A Large-conductance mechanosensitive channel; intermediate state mechanosensitive channel osmoregulation, cell membrane, ION transport; 3.82A {Staphylococcus aureus subsp}
Probab=12.91 E-value=3.5e+02 Score=22.23 Aligned_cols=33 Identities=30% Similarity=0.581 Sum_probs=20.6
Q ss_pred HhC-CCcchHHHHhhHHH---HHHH---HHHHHHHHHHHHhCC
Q 013855 357 MKD-KLDISLGVAIGSST---QISM---FGIPFCVVIGWIMGR 392 (435)
Q Consensus 357 ~kg-k~dlaig~~iGSsi---q~~L---fv~P~~vligw~~g~ 392 (435)
+|| -+|+|+|+++|++- -+++ .+.|+. ++..|.
T Consensus 30 ~rGNViDLAVgVIIG~AF~~IV~SlV~dIImPlI---g~l~gg 69 (114)
T 3hzq_A 30 LKGNVLDLAIAVVMGAAFNKIICSLVENIIMPLI---GKIFGS 69 (114)
T ss_dssp SCCTTHHHHHHHHHHHHHHHHHHHHHHHTHHHHH---HHSSSC
T ss_pred hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHcCC
Confidence 344 46999999999963 2332 456764 555543
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=10.95 E-value=4e+02 Score=25.04 Aligned_cols=44 Identities=5% Similarity=-0.073 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHhHHHHhhccCCCchhHhHHHH
Q 013855 297 WESLIWLAIMTAWISILSQYVVDAIEGASASWNIPISFISVILL 340 (435)
Q Consensus 297 ~~~i~~Lvi~~~~i~~~a~~LV~si~~i~~~~gis~~fiGlill 340 (435)
+..+..+.....+..+......-....+.+++|+|..-+|++..
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~ 68 (438)
T 3o7q_A 25 IIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQS 68 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 33333333333333333334444466788899999999887643
No 6
>2kdc_A Diacylglycerol kinase; membrane protein, solution kinase, DAGK, cell inner membrane, cell membrane, membrane, phospholipid biosynthesis; NMR {Escherichia coli}
Probab=10.54 E-value=4e+02 Score=21.92 Aligned_cols=47 Identities=17% Similarity=0.070 Sum_probs=33.0
Q ss_pred HHhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 013855 84 LLMPFGPLAIMVHNLTGHKGWVFFLSLLGITPLAERLGYATEQLTFFTG 132 (435)
Q Consensus 84 ~ll~fvp~~i~~~~~~~~~~~vF~~~~laIipla~~l~~ate~la~~~G 132 (435)
...+.+|+++..+... .-|.+.+..+.++..+|++.-+.|.+.++.+
T Consensus 37 ~~~~~i~~~~~l~~s~--~e~~~li~~i~lVl~~EllNTAIE~vvD~v~ 83 (121)
T 2kdc_A 37 AVLLAVVIACWLDVDA--ITRVLLISSVMLVMIVEILNSAIEAVVDRIG 83 (121)
T ss_dssp HHHHHHHHHHHCCCCC--SHHHHHHHHHHHHHHHHTHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4455566665444321 2456666677788899999999999998877
No 7
>3lae_A UPF0053 protein HI0107; APC85784.2, conserved protein, haemophilus influenzae RD KW20, structural genomics, PSI-2; HET: MSE; 1.45A {Haemophilus influenzae} SCOP: d.145.1.4 PDB: 2o1r_A*
Probab=9.48 E-value=1.3e+02 Score=22.60 Aligned_cols=16 Identities=19% Similarity=0.347 Sum_probs=14.3
Q ss_pred chhhHHHHHhhcChhH
Q 013855 133 ATVGGLLNATFGNATE 148 (435)
Q Consensus 133 ~~vgGll~at~Gn~pE 148 (435)
+|+||++..-+|..|+
T Consensus 36 ~Tl~G~i~~~lg~iP~ 51 (81)
T 3lae_A 36 RTFNGLILEHLEEIPD 51 (81)
T ss_dssp SBHHHHHHHHCSSCCC
T ss_pred ccHHHHHHHHhCCCCC
Confidence 6999999999998885
No 8
>3llb_A Uncharacterized protein; protein PA3983, unknown function, structural genomics, PSI2, MCSG, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: d.145.1.0
Probab=9.40 E-value=1.5e+02 Score=22.36 Aligned_cols=16 Identities=44% Similarity=0.812 Sum_probs=14.3
Q ss_pred chhhHHHHHhhcChhH
Q 013855 133 ATVGGLLNATFGNATE 148 (435)
Q Consensus 133 ~~vgGll~at~Gn~pE 148 (435)
+|+||++..-+|..|+
T Consensus 36 ~Tl~G~i~~~lg~iP~ 51 (83)
T 3llb_A 36 DTVGGLVMSAFGHLPK 51 (83)
T ss_dssp SBHHHHHHHHHSSCCC
T ss_pred cCHHHHHHHHhCcCCC
Confidence 6999999999998885
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=7.64 E-value=1.2e+03 Score=21.41 Aligned_cols=32 Identities=6% Similarity=-0.175 Sum_probs=18.9
Q ss_pred hHHHHhhc-cCCCchhHhHHHHHhhhchhHHHHHH
Q 013855 320 AIEGASAS-WNIPISFISVILLPIVGNAAEHASAI 353 (435)
Q Consensus 320 si~~i~~~-~gis~~fiGlillpivtn~pE~vtaI 353 (435)
-.....++ .|.++...|....... ....+..+
T Consensus 274 ~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~ 306 (451)
T 1pw4_A 274 WSPTYLKEVKHFALDKSSWAYFLYE--YAGIPGTL 306 (451)
T ss_dssp HHHHHBTTBSCCCHHHHHHHHHHHH--HHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHH--HHHHHHHH
Confidence 34444444 8999998887665543 34444443
No 10
>2rk5_A Putative hemolysin; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics, membrane; 1.50A {Streptococcus mutans UA159} SCOP: d.145.1.4
Probab=7.43 E-value=2e+02 Score=21.75 Aligned_cols=16 Identities=19% Similarity=0.368 Sum_probs=14.0
Q ss_pred chhhHHHHHhhcChhH
Q 013855 133 ATVGGLLNATFGNATE 148 (435)
Q Consensus 133 ~~vgGll~at~Gn~pE 148 (435)
+|+||++.--+|..|+
T Consensus 35 dTl~G~v~~~lg~iP~ 50 (87)
T 2rk5_A 35 DTIAGFYLTGVGTIPS 50 (87)
T ss_dssp CBHHHHHHHHHCSCCC
T ss_pred ccHHHHHHHHhCcCCC
Confidence 6999999998998885
Done!