Query 013855
Match_columns 435
No_of_seqs 304 out of 1949
Neff 6.7
Searched_HMMs 13730
Date Mon Mar 25 18:22:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013855.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/013855hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2rk5a1 d.145.1.4 (A:5-88) Put 10.1 63 0.0046 22.6 2.0 16 133-148 33-48 (84)
2 d2o1ra1 d.145.1.4 (A:1-78) Hyp 10.0 60 0.0044 22.5 1.9 24 125-148 17-48 (78)
3 d2p3ha1 d.145.1.4 (A:5-102) Un 8.7 70 0.0051 23.4 1.9 16 133-148 36-51 (98)
4 d2plia1 d.145.1.4 (A:5-88) Unc 8.1 78 0.0057 22.3 1.9 24 125-148 22-53 (84)
5 d2r2za1 d.145.1.4 (A:5-88) Put 7.8 82 0.006 22.1 1.9 17 133-149 36-52 (84)
6 d2oara1 f.16.1.1 (A:10-118) Ga 7.5 29 0.0021 26.5 -1.0 31 356-386 1-37 (109)
7 d2euca1 a.249.1.1 (A:1-113) Hy 6.3 79 0.0058 23.5 1.0 17 77-93 72-88 (113)
8 d2axti1 f.23.37.1 (I:1-35) Pho 6.3 1.3E+02 0.0097 17.8 1.9 21 400-420 8-28 (35)
9 d2nqwa1 d.145.1.4 (A:4-90) Hyp 6.2 1.1E+02 0.0079 21.5 1.9 16 133-148 41-56 (87)
10 d3deda1 d.145.1.4 (A:341-427) 5.5 1.4E+02 0.01 20.9 2.0 15 134-148 42-56 (87)
No 1
>d2rk5a1 d.145.1.4 (A:5-88) Putative hemolysin SMU1693 {Streptococcus mutans [TaxId: 1309]}
Probab=10.05 E-value=63 Score=22.65 Aligned_cols=16 Identities=19% Similarity=0.368 Sum_probs=14.3
Q ss_pred chhhHHHHHhhcChhH
Q 013855 133 ATVGGLLNATFGNATE 148 (435)
Q Consensus 133 ~~vgGll~at~Gn~pE 148 (435)
+|+||++.--+|..|+
T Consensus 33 dTlgG~v~~~lg~iP~ 48 (84)
T d2rk5a1 33 DTIAGFYLTGVGTIPS 48 (84)
T ss_dssp CBHHHHHHHHHCSCCC
T ss_pred hhHHHHHHHHhCcCCC
Confidence 7999999999998885
No 2
>d2o1ra1 d.145.1.4 (A:1-78) Hypothetical protein HI0107 {Haemophilus influenzae [TaxId: 727]}
Probab=9.96 E-value=60 Score=22.54 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=18.7
Q ss_pred HHHHHHhC--------chhhHHHHHhhcChhH
Q 013855 125 EQLTFFTG--------ATVGGLLNATFGNATE 148 (435)
Q Consensus 125 e~la~~~G--------~~vgGll~at~Gn~pE 148 (435)
+++.+.+| +|+||++.--+|..||
T Consensus 17 ~dl~~~l~~~l~~~~~~Ti~G~v~~~lg~iP~ 48 (78)
T d2o1ra1 17 RDLNKMFNWELDTEDARTFNGLILEHLEEIPD 48 (78)
T ss_dssp HHHHHHHCCCCCCSSCSBHHHHHHHHCSSCCC
T ss_pred HHHHHHHCCCCCCccchHHHHHHHHHhCcCCC
Confidence 45555554 7999999999998885
No 3
>d2p3ha1 d.145.1.4 (A:5-102) Uncharacterized protein Cgl1194/Cg1349 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=8.71 E-value=70 Score=23.42 Aligned_cols=16 Identities=25% Similarity=0.281 Sum_probs=14.5
Q ss_pred chhhHHHHHhhcChhH
Q 013855 133 ATVGGLLNATFGNATE 148 (435)
Q Consensus 133 ~~vgGll~at~Gn~pE 148 (435)
+|+||++..-+|..|+
T Consensus 36 ~Tl~G~~~~~lg~iP~ 51 (98)
T d2p3ha1 36 ETISGLLFDHANALLK 51 (98)
T ss_dssp CBHHHHHHHHHCSCCC
T ss_pred cCHHHHHHHHHCcCCC
Confidence 7999999999999885
No 4
>d2plia1 d.145.1.4 (A:5-88) Uncharacterized protein NMB0537 {Neisseria meningitidis [TaxId: 487]}
Probab=8.13 E-value=78 Score=22.29 Aligned_cols=24 Identities=33% Similarity=0.625 Sum_probs=18.4
Q ss_pred HHHHHHhC--------chhhHHHHHhhcChhH
Q 013855 125 EQLTFFTG--------ATVGGLLNATFGNATE 148 (435)
Q Consensus 125 e~la~~~G--------~~vgGll~at~Gn~pE 148 (435)
+++.+.+| +|+||++.--+|..|+
T Consensus 22 ~dl~~~~~~~l~~~~~~TigG~i~~~l~~iP~ 53 (84)
T d2plia1 22 EDINTFFGTEYSSEEADTIGGLVIQELGHLPV 53 (84)
T ss_dssp HHHHHHHCCCCCCSSCCBHHHHHHHHHSSCCC
T ss_pred HHHHHHhCCCCCccccHHHHHHHHHHhCcccc
Confidence 45555554 6999999999998885
No 5
>d2r2za1 d.145.1.4 (A:5-88) Putative hemolysin EF0700 {Enterococcus faecalis [TaxId: 1351]}
Probab=7.78 E-value=82 Score=22.09 Aligned_cols=17 Identities=24% Similarity=0.425 Sum_probs=14.5
Q ss_pred chhhHHHHHhhcChhHH
Q 013855 133 ATVGGLLNATFGNATEL 149 (435)
Q Consensus 133 ~~vgGll~at~Gn~pEL 149 (435)
+|+||++.--+|..|+.
T Consensus 36 ~TigG~i~~~lg~iP~~ 52 (84)
T d2r2za1 36 DTMAGYLITALGTIPDE 52 (84)
T ss_dssp CBHHHHHHHHHSSCCCT
T ss_pred hhHHHHHHHHhCcCCCC
Confidence 79999999889988853
No 6
>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=7.53 E-value=29 Score=26.52 Aligned_cols=31 Identities=23% Similarity=0.332 Sum_probs=20.5
Q ss_pred HHhCCCcchHHHHhhHHH---HHHH---HHHHHHHHH
Q 013855 356 AMKDKLDISLGVAIGSST---QISM---FGIPFCVVI 386 (435)
Q Consensus 356 A~kgk~dlaig~~iGSsi---q~~L---fv~P~~vli 386 (435)
||-|-+|+|+|+++|+.- -+++ ++.|+...+
T Consensus 1 arGNVidLAVgvIiG~AF~~iV~slV~diimPlIg~i 37 (109)
T d2oara1 1 ARGNIVDLAVAVVIGTAFTALVTKFTDSIITPLINRI 37 (109)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhcchHhhc
Confidence 344568999999999863 2222 567877554
No 7
>d2euca1 a.249.1.1 (A:1-113) Hypothetical protein YfmB {Bacillus subtilis [TaxId: 1423]}
Probab=6.29 E-value=79 Score=23.51 Aligned_cols=17 Identities=24% Similarity=0.426 Sum_probs=14.4
Q ss_pred hhhhhHHHHhhHHHHHH
Q 013855 77 VFSNKLNLLMPFGPLAI 93 (435)
Q Consensus 77 ~~~s~~n~ll~fvp~~i 93 (435)
.++||++.|+|||---+
T Consensus 72 ~LssYL~~L~p~vT~DM 88 (113)
T d2euca1 72 KLSGYLSTLLPYVTADM 88 (113)
T ss_dssp HHHHHHHHHGGGCCHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 68999999999986554
No 8
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.26 E-value=1.3e+02 Score=17.75 Aligned_cols=21 Identities=19% Similarity=0.387 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHHHhcC
Q 013855 400 LFETATLFITVIVVAFFLQVC 420 (435)
Q Consensus 400 ~fe~~~L~~svllv~~~~~dg 420 (435)
.+.++.+|++.++.+++-.|-
T Consensus 8 Vy~vV~fFv~lFiFGFLSnDP 28 (35)
T d2axti1 8 VYIVVTFFVLLFVFGFLSGDP 28 (35)
T ss_dssp HHHHHHHHHHHHHHHHHTTCT
T ss_pred hhhHHHHHHHHHHHhhccCCC
Confidence 345678889999999887663
No 9
>d2nqwa1 d.145.1.4 (A:4-90) Hypothetical protein PG0272 {Porphyromonas gingivalis [TaxId: 837]}
Probab=6.24 E-value=1.1e+02 Score=21.46 Aligned_cols=16 Identities=19% Similarity=0.196 Sum_probs=14.2
Q ss_pred chhhHHHHHhhcChhH
Q 013855 133 ATVGGLLNATFGNATE 148 (435)
Q Consensus 133 ~~vgGll~at~Gn~pE 148 (435)
+|+||++.--+|..||
T Consensus 41 ~Ti~G~i~~~lg~iP~ 56 (87)
T d2nqwa1 41 DTLSGLFLEIKQELPH 56 (87)
T ss_dssp SBHHHHHHHHHCSCCC
T ss_pred eeHHHHHHHHhCcccc
Confidence 6999999999998885
No 10
>d3deda1 d.145.1.4 (A:341-427) Probable hemolysin CV0231 {Chromobacterium violaceum [TaxId: 536]}
Probab=5.52 E-value=1.4e+02 Score=20.91 Aligned_cols=15 Identities=20% Similarity=0.448 Sum_probs=13.5
Q ss_pred hhhHHHHHhhcChhH
Q 013855 134 TVGGLLNATFGNATE 148 (435)
Q Consensus 134 ~vgGll~at~Gn~pE 148 (435)
|+||++.--+|..|+
T Consensus 42 TlgG~il~~lg~iP~ 56 (87)
T d3deda1 42 TLAGVMLYQLGRVPS 56 (87)
T ss_dssp BHHHHHHHHHCSSCC
T ss_pred CHHHHHHHHhCcCCC
Confidence 899999999998885
Done!