Query 013856
Match_columns 435
No_of_seqs 323 out of 1631
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 18:23:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013856.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013856hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i7f_A Aspartyl-tRNA synthetas 100.0 9.2E-85 3.1E-89 687.8 34.9 368 54-434 22-429 (548)
2 1eov_A ASPRS, aspartyl-tRNA sy 100.0 2.2E-76 7.6E-81 621.1 36.5 357 61-434 2-366 (487)
3 3nem_A Aspartyl-tRNA synthetas 100.0 2.3E-75 8E-80 605.5 32.3 314 93-434 5-319 (438)
4 3bju_A Lysyl-tRNA synthetase; 100.0 2.5E-73 8.6E-78 601.6 22.3 328 76-433 24-360 (521)
5 3m4p_A Ehasnrs, asparaginyl-tR 100.0 1.8E-71 6.1E-76 579.0 30.1 316 88-433 15-340 (456)
6 4ex5_A Lysine--tRNA ligase; st 100.0 1.4E-70 4.6E-75 578.9 20.1 310 60-408 35-357 (529)
7 1wyd_A Hypothetical aspartyl-t 100.0 5.6E-69 1.9E-73 556.9 28.8 309 93-434 5-314 (429)
8 2xgt_A Asparaginyl-tRNA synthe 100.0 1E-68 3.5E-73 556.4 26.6 307 94-433 2-319 (435)
9 1e1o_A Lysyl-tRNA synthetase, 100.0 8.5E-69 2.9E-73 564.6 22.5 296 76-408 32-336 (504)
10 1x54_A Asparaginyl-tRNA synthe 100.0 3.8E-68 1.3E-72 551.7 25.2 310 93-432 5-316 (434)
11 3a74_A Lysyl-tRNA synthetase; 100.0 8.2E-68 2.8E-72 556.2 24.3 296 76-408 24-327 (493)
12 1n9w_A Aspartyl-tRNA synthetas 100.0 1.6E-67 5.4E-72 545.1 25.8 301 92-433 2-304 (422)
13 1l0w_A Aspartyl-tRNA synthetas 100.0 3.4E-64 1.2E-68 537.4 26.6 278 93-407 5-286 (580)
14 1c0a_A Aspartyl tRNA synthetas 100.0 9.2E-63 3.2E-67 527.6 26.9 270 93-407 4-279 (585)
15 4ah6_A Aspartate--tRNA ligase, 100.0 4.6E-61 1.6E-65 513.3 24.4 274 93-413 13-292 (617)
16 3a5y_A GENX, putative lysyl-tR 100.0 2.3E-42 7.8E-47 348.5 13.4 170 238-434 27-222 (345)
17 1nnh_A Asparaginyl-tRNA synthe 100.0 1.6E-37 5.6E-42 307.2 13.3 157 233-405 1-168 (294)
18 3qtc_A Pyrrolysyl-tRNA synthet 99.9 4.5E-25 1.5E-29 217.6 -0.1 165 178-365 22-206 (290)
19 2rhq_A Phenylalanyl-tRNA synth 99.1 3E-10 1E-14 112.0 9.8 113 251-367 55-185 (294)
20 1b7y_A Phers, protein (phenyla 98.9 1.9E-09 6.6E-14 108.5 9.9 114 251-367 103-246 (350)
21 3dsq_A Pyrrolysyl-tRNA synthet 98.8 5.6E-09 1.9E-13 102.6 6.2 112 252-365 74-202 (288)
22 12as_A Asparagine synthetase; 98.7 8.4E-08 2.9E-12 94.1 12.6 154 248-407 5-177 (330)
23 1evl_A Threonyl-tRNA synthetas 98.2 1.9E-06 6.5E-11 87.9 8.0 113 246-361 28-159 (401)
24 1qe0_A Histidyl-tRNA synthetas 98.2 1.4E-06 4.9E-11 89.1 6.7 118 246-364 14-153 (420)
25 2dq3_A Seryl-tRNA synthetase; 98.2 3.7E-06 1.3E-10 86.8 9.7 115 246-364 170-305 (425)
26 3pco_A Phenylalanyl-tRNA synth 98.2 2.2E-06 7.4E-11 85.5 7.0 112 252-367 110-236 (327)
27 2i4l_A Proline-tRNA ligase; al 98.1 4.7E-06 1.6E-10 86.7 9.2 104 246-349 65-186 (458)
28 1z7m_A ATP phosphoribosyltrans 98.1 5.9E-06 2E-10 82.9 9.1 117 246-363 34-168 (344)
29 1wu7_A Histidyl-tRNA synthetas 98.1 1.4E-05 4.9E-10 82.2 11.0 104 246-350 18-134 (434)
30 1nyr_A Threonyl-tRNA synthetas 98.0 7.1E-06 2.4E-10 88.8 8.6 114 246-362 269-403 (645)
31 1hc7_A Prolyl-tRNA synthetase; 98.0 2E-05 6.8E-10 82.5 10.7 115 246-361 42-178 (477)
32 1h4v_B Histidyl-tRNA synthetas 98.0 1.5E-05 5.2E-10 81.5 9.5 117 246-363 15-152 (421)
33 3od1_A ATP phosphoribosyltrans 97.9 2.6E-05 9.1E-10 79.7 10.1 118 246-364 22-155 (400)
34 4e51_A Histidine--tRNA ligase; 97.9 1.5E-05 5E-10 83.2 8.3 118 246-364 44-182 (467)
35 1htt_A Histidyl-tRNA synthetas 97.9 2E-05 6.7E-10 80.7 8.5 104 246-350 16-136 (423)
36 3vbb_A Seryl-tRNA synthetase, 97.9 3.9E-05 1.3E-09 80.7 10.4 100 246-345 199-328 (522)
37 2j3l_A Prolyl-tRNA synthetase; 97.9 2.9E-05 9.8E-10 82.7 9.6 112 246-360 45-176 (572)
38 1nj8_A Proline-tRNA synthetase 97.9 4.2E-05 1.4E-09 79.6 10.5 112 246-358 36-171 (459)
39 1ses_A Seryl-tRNA synthetase; 97.9 6.4E-05 2.2E-09 77.4 11.6 115 246-362 164-299 (421)
40 3uh0_A Threonyl-tRNA synthetas 97.9 3.3E-05 1.1E-09 80.4 9.6 117 246-364 62-200 (460)
41 3net_A Histidyl-tRNA synthetas 97.9 1.2E-05 4E-10 83.8 6.2 119 246-365 24-175 (465)
42 2dq0_A Seryl-tRNA synthetase; 97.9 2.5E-05 8.5E-10 81.2 8.6 115 246-364 191-326 (455)
43 3rac_A Histidine-tRNA ligase; 97.8 4.1E-05 1.4E-09 77.6 9.3 119 246-364 35-176 (373)
44 1qf6_A THRRS, threonyl-tRNA sy 97.8 3.2E-05 1.1E-09 83.8 8.8 110 246-357 269-396 (642)
45 3lc0_A Histidyl-tRNA synthetas 97.8 4.6E-05 1.6E-09 79.2 9.5 118 246-364 41-175 (456)
46 3err_A Fusion protein of micro 97.8 0.0001 3.4E-09 78.1 11.8 117 246-364 273-410 (536)
47 1nj1_A PROR, proline-tRNA synt 97.8 3.7E-05 1.3E-09 80.8 8.4 116 246-363 69-208 (501)
48 3l4g_A Phenylalanyl-tRNA synth 97.8 4.7E-05 1.6E-09 79.8 8.5 50 315-365 348-398 (508)
49 3lss_A Seryl-tRNA synthetase; 97.8 4E-05 1.4E-09 80.0 7.7 118 245-364 205-345 (484)
50 3a32_A Probable threonyl-tRNA 97.7 6.1E-05 2.1E-09 78.5 8.1 102 246-347 47-169 (471)
51 1wle_A Seryl-tRNA synthetase; 97.7 0.00014 4.7E-09 76.4 10.3 119 246-364 217-357 (501)
52 3qne_A Seryl-tRNA synthetase, 97.7 0.00011 3.8E-09 76.6 9.5 117 246-364 183-322 (485)
53 3ial_A Prolyl-tRNA synthetase; 97.6 8.5E-05 2.9E-09 78.3 8.0 117 246-363 53-192 (518)
54 2cja_A Seryl-tRNA synthetase; 97.6 0.00012 4.1E-09 77.2 8.9 115 246-362 229-393 (522)
55 4g84_A Histidine--tRNA ligase, 97.6 0.00019 6.4E-09 74.2 9.8 118 246-364 26-159 (464)
56 4g85_A Histidine-tRNA ligase, 97.6 0.00017 5.8E-09 75.9 9.2 118 246-364 79-212 (517)
57 1usy_A ATP phosphoribosyltrans 97.6 0.00014 4.6E-09 70.6 7.8 105 254-364 6-119 (275)
58 4hvc_A Bifunctional glutamate/ 97.5 0.00017 5.9E-09 76.0 8.7 117 246-363 59-198 (519)
59 3mf2_A BLL0957 protein; aminoa 97.2 0.00065 2.2E-08 67.8 7.7 119 245-366 61-218 (346)
60 1ati_A Glycyl-tRNA synthetase; 97.1 0.00071 2.4E-08 71.1 7.2 34 246-279 37-72 (505)
61 2du7_A O-phosphoseryl-tRNA syn 96.9 0.0019 6.5E-08 68.1 8.8 50 316-365 219-269 (549)
62 3cmq_A Phenylalanyl-tRNA synth 96.9 0.0022 7.5E-08 65.8 8.7 87 254-343 53-160 (415)
63 2du3_A O-phosphoseryl-tRNA syn 96.8 0.002 6.8E-08 67.9 7.6 50 316-365 207-257 (534)
64 2zt5_A Glycyl-tRNA synthetase; 96.7 0.0017 5.7E-08 70.8 6.5 32 246-277 99-131 (693)
65 2k50_A Replication factor A re 96.6 0.0077 2.6E-07 50.3 8.5 90 92-196 7-105 (115)
66 3ikl_A DNA polymerase subunit 96.5 0.0042 1.4E-07 64.4 7.9 106 248-362 104-224 (459)
67 3kf6_A Protein STN1; OB fold, 96.5 0.026 8.8E-07 50.3 11.9 80 105-195 48-128 (159)
68 2odr_B Phosphoseryl-tRNA synth 96.5 0.0039 1.3E-07 66.5 7.4 51 315-365 225-276 (648)
69 2odr_A Phosphoseryl-tRNA synth 96.5 0.0041 1.4E-07 66.5 7.4 51 315-365 225-276 (665)
70 2odr_D Phosphoseryl-tRNA synth 96.5 0.0043 1.5E-07 66.5 7.4 51 315-365 225-276 (685)
71 2odr_C Phosphoseryl-tRNA synth 96.4 0.0049 1.7E-07 66.1 7.1 51 315-365 225-276 (701)
72 1ynx_A Replication factor-A pr 96.4 0.017 5.7E-07 48.4 9.1 97 91-196 3-109 (114)
73 1g5h_A Mitochondrial DNA polym 96.2 0.0087 3E-07 62.0 7.8 116 247-364 61-216 (454)
74 3dm3_A Replication factor A; p 96.1 0.099 3.4E-06 43.2 12.4 88 90-196 3-100 (105)
75 3kdf_D Replication protein A 3 95.6 0.08 2.7E-06 45.3 10.2 79 105-195 32-111 (132)
76 3e0e_A Replication protein A; 95.5 0.2 6.9E-06 40.5 11.7 83 94-196 4-96 (97)
77 1nnx_A Protein YGIW; structura 95.4 0.058 2E-06 45.1 8.2 81 94-194 27-108 (109)
78 3au7_A TIAS, putative uncharac 95.3 0.16 5.6E-06 51.5 12.7 80 101-196 281-362 (402)
79 3ig2_A Phenylalanyl-tRNA synth 95.0 0.077 2.6E-06 49.1 8.7 114 252-365 7-151 (213)
80 3l4g_B Phenylalanyl-tRNA synth 95.0 0.057 2E-06 57.7 8.8 112 253-365 395-522 (589)
81 4gop_B Putative uncharacterize 94.8 0.19 6.5E-06 43.1 10.2 79 105-194 37-115 (136)
82 2rhq_B Phenylalanyl-tRNA synth 94.8 0.07 2.4E-06 59.0 9.1 112 252-365 496-632 (795)
83 1o7i_A SSB, SSO2364, single st 93.7 0.42 1.5E-05 39.9 9.8 85 93-196 3-96 (119)
84 3ica_A Phenylalanyl-tRNA synth 93.6 0.19 6.4E-06 46.5 8.0 114 252-365 7-151 (213)
85 1jmc_A Protein (replication pr 93.3 0.25 8.4E-06 46.3 8.5 98 90-196 6-113 (246)
86 2kbn_A Conserved protein; nucl 92.2 0.89 3E-05 37.5 9.4 87 92-196 5-94 (109)
87 2pi2_A Replication protein A 3 91.0 1.1 3.9E-05 42.8 10.1 79 105-195 72-151 (270)
88 3kdf_A Replication protein A 1 90.9 1.2 4E-05 37.7 8.9 79 92-195 11-89 (121)
89 1txy_A Primosomal replication 90.3 3.6 0.00012 33.4 11.2 53 135-195 50-102 (104)
90 3kf8_A Protein STN1; OB fold; 90.1 1.8 6.2E-05 40.3 10.2 89 105-196 86-185 (220)
91 2hpi_A DNA polymerase III alph 89.6 0.51 1.7E-05 54.3 7.3 79 102-194 1040-1122(1220)
92 2k75_A Uncharacterized protein 89.3 2.6 8.8E-05 34.5 9.6 88 92-201 3-99 (106)
93 4gop_C Putative uncharacterize 89.1 0.65 2.2E-05 47.5 7.1 96 92-196 3-108 (444)
94 3fhw_A Primosomal replication 88.3 7.2 0.00025 32.5 11.8 56 134-200 48-104 (115)
95 1b7y_B Phers, protein (phenyla 88.2 1.6 5.4E-05 48.1 9.8 106 251-365 491-620 (785)
96 3tqy_A Single-stranded DNA-bin 84.9 11 0.00036 33.1 11.7 57 133-196 56-115 (158)
97 2vw9_A Single-stranded DNA bin 84.5 8.9 0.00031 32.5 10.7 58 132-196 48-108 (134)
98 4gop_A Putative uncharacterize 84.0 2.3 7.7E-05 35.5 6.5 54 101-171 15-69 (114)
99 3vdy_A SSB, single-stranded DN 83.8 13 0.00044 30.5 11.1 57 133-196 50-109 (116)
100 2pi2_E Replication protein A 1 83.0 6.4 0.00022 34.1 9.1 57 100-171 39-96 (142)
101 3f2b_A DNA-directed DNA polyme 79.3 15 0.0005 41.7 12.7 92 93-195 8-103 (1041)
102 1z9f_A Single-strand binding p 78.9 18 0.00061 31.5 10.7 58 132-196 62-122 (153)
103 1j6q_A Cytochrome C maturation 74.1 29 0.001 29.7 10.4 73 101-196 29-106 (136)
104 3ulp_A Single-strand binding p 72.9 39 0.0013 27.9 11.2 57 133-195 54-119 (124)
105 1sr3_A APO-CCME; OB fold, beta 72.8 23 0.00079 30.4 9.5 73 101-196 25-101 (136)
106 1qvc_A Single stranded DNA bin 70.5 35 0.0012 29.1 10.3 57 132-195 52-114 (145)
107 1gm5_A RECG; helicase, replica 69.4 2.7 9.2E-05 46.3 3.6 66 98-171 159-229 (780)
108 2fxq_A Single-strand binding p 69.1 29 0.001 32.6 10.4 85 105-196 129-230 (264)
109 3mxn_B RECQ-mediated genome in 67.5 39 0.0013 29.3 9.7 73 105-196 59-131 (150)
110 2fxq_A Single-strand binding p 67.3 45 0.0016 31.3 11.3 57 133-196 52-110 (264)
111 1se8_A Single-strand binding p 65.8 42 0.0014 32.4 10.9 83 106-195 131-233 (301)
112 1wjj_A Hypothetical protein F2 65.2 28 0.00096 30.1 8.5 89 90-196 14-120 (145)
113 3k8a_A Putative primosomal rep 63.8 56 0.0019 26.3 11.8 48 134-193 54-101 (103)
114 4gs3_A Single-stranded DNA-bin 62.4 63 0.0021 26.4 9.8 82 105-194 12-106 (107)
115 3lgj_A Single-stranded DNA-bin 60.3 89 0.003 27.4 11.3 85 106-196 25-135 (169)
116 1se8_A Single-strand binding p 58.4 88 0.003 30.1 11.7 58 133-196 52-112 (301)
117 3eiv_A Single-stranded DNA-bin 56.8 1.1E+02 0.0039 27.6 12.2 55 132-192 52-108 (199)
118 3pco_B Phenylalanyl-tRNA synth 55.9 10 0.00035 41.8 5.0 110 255-365 495-628 (795)
119 3pgz_A Single-stranded DNA-bin 55.7 95 0.0032 28.0 10.6 58 133-196 74-138 (193)
120 3ull_A DNA binding protein; DN 46.7 26 0.0009 29.4 5.1 43 154-196 83-127 (132)
121 3afp_A Single-stranded DNA-bin 44.9 1.6E+02 0.0053 25.7 11.6 53 132-190 52-106 (168)
122 2k52_A Uncharacterized protein 43.1 59 0.002 24.4 6.2 52 103-167 5-56 (80)
123 2kqr_A Asparaginyl-tRNA synthe 42.1 8.8 0.0003 32.0 1.3 24 19-42 54-77 (113)
124 1kl9_A Eukaryotic translation 37.9 43 0.0015 29.9 5.4 56 103-166 15-71 (182)
125 3en2_A Probable primosomal rep 37.8 1E+02 0.0035 24.8 7.1 48 133-191 48-95 (101)
126 3koj_A Uncharacterized protein 37.3 1.6E+02 0.0056 23.7 12.1 79 106-191 13-107 (108)
127 2eqs_A ATP-dependent RNA helic 29.5 46 0.0016 26.5 3.7 60 102-167 11-71 (103)
128 1ou8_A Stringent starvation pr 28.4 51 0.0017 27.2 3.8 54 250-308 8-62 (111)
129 1yfn_A Stringent starvation pr 28.3 55 0.0019 27.3 4.0 54 250-308 9-63 (118)
130 2k4k_A GSP13, general stress p 28.2 53 0.0018 27.4 4.0 56 102-167 6-62 (130)
131 2kct_A Cytochrome C-type bioge 27.6 2.3E+02 0.0078 22.4 8.6 73 101-196 5-85 (94)
132 3f1z_A Putative nucleic acid-b 26.1 97 0.0033 24.8 4.9 66 101-171 46-117 (133)
133 2khi_A 30S ribosomal protein S 25.5 37 0.0013 27.6 2.5 59 101-167 28-86 (115)
134 2a19_A EIF-2- alpha, eukaryoti 25.0 58 0.002 28.8 3.9 56 103-166 15-71 (175)
135 1ou9_A Stringent starvation pr 24.8 62 0.0021 27.4 3.7 54 250-308 8-62 (129)
136 1v1q_A Primosomal replication 24.4 1.3E+02 0.0044 25.5 5.7 54 134-195 66-119 (134)
137 2b29_A Replication protein A 7 21.8 3.4E+02 0.011 22.3 8.5 62 125-196 46-108 (123)
138 1xjv_A Protection of telomeres 21.7 2.2E+02 0.0075 26.8 7.6 70 91-170 5-81 (294)
139 1wi5_A RRP5 protein homolog; S 20.2 1.7E+02 0.0057 23.6 5.6 53 102-167 20-78 (119)
No 1
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=100.00 E-value=9.2e-85 Score=687.83 Aligned_cols=368 Identities=43% Similarity=0.690 Sum_probs=316.9
Q ss_pred ccccCCCCCCccCCChhhhhccCCCCCCCccccccCcceeEeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCe
Q 013856 54 IEEEGPLANNYGDVPLQELQSVNDPQTGKWSEAVSGREWTEVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVS 133 (435)
Q Consensus 54 ~~~~d~~~~~Yg~~~~~~~~~~~~pyp~~~~~~~~~~~~~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~ 133 (435)
.+++|.++++||++|++|+|.. ..++++|+.|++|.+.+.|++|+|+|||+++|.+| |++|++|||+++
T Consensus 22 ~~~~~~~~~~yg~~~~~~~~~~----------~~~~~~~~~i~~l~~~~~g~~V~v~Gwv~~~R~~g-kl~Fi~LrD~~g 90 (548)
T 3i7f_A 22 KTPELVSGENFKVMPMHQSQPC----------YKTGLKYTEIEELVPAMAEKTVTIRARVQAVRGKG-NMVFLFLRKGIY 90 (548)
T ss_dssp BCCCCCCCSSEEECCCCSSCGG----------GCCCCCBCCGGGCSGGGTTCEEEEEEEEEEEEECS-SEEEEEEEETTE
T ss_pred ccccchhhhhcCcCcccccccc----------ccCCCceEEhhhcchhcCCCEEEEEEEEEEEecCC-CeEEEEEEECCe
Confidence 4567899999999999987721 24678999999999889999999999999999999 999999999999
Q ss_pred EEEEEEeeCCCCCCHHHHHHHhcCCCCceEEEEEEEecCCccCCCCc-eeEEEEEeEEEEeecC-CCCCcccccccchHH
Q 013856 134 TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGAT-QQVEVQIKKLYCVSRA-AKTPITIEDASRSEA 211 (435)
Q Consensus 134 ~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t-~~lEI~v~~i~vls~~-~~lP~~~~d~~~~~~ 211 (435)
+||||++.+. .++++|++|++.|+.||+|.|+|+|.+++.++++++ |++||++++|+|||+| .+||++++|+++++.
T Consensus 91 ~iQ~v~~~~~-~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~~El~~~~i~vls~a~~~lP~~~~d~~~~~~ 169 (548)
T 3i7f_A 91 TCQALVMKSE-TISKEFVQFCQKISAESICDITGIVKAVEKPIEKATQQDVEIHVTSIAVVSLAEYPLPMQIEDLTFPSS 169 (548)
T ss_dssp EEEEEEECSS-SSCHHHHHHHHTCCTTEEEEEEEEEEECSSCCTTSSSCSEEEEEEEEEEEECCCBSCSSCSGGGSCCHH
T ss_pred eEEEEEECCC-ccCHHHHHHHhCCCCCCEEEEEEEEEeCCcccccCCCCcEEEEEeEEEEEecCCCCCCCCchhcccccc
Confidence 9999998643 368899999999999999999999998877777774 7899999999999999 999999999988765
Q ss_pred HHHhh--------------------------------------hhcCCCCCCCCcccccccceeeeechhhhhHHHHHHH
Q 013856 212 EIEKA--------------------------------------SKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQ 253 (435)
Q Consensus 212 ~~~~~--------------------------------------~~~~~~~~~~~~e~rl~~R~Ldlr~~~~~~i~~~rs~ 253 (435)
+.++. ......++.+++++||+|||||||++.++++|++||.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~e~rl~~R~LdLR~~~~~~~~r~Rs~ 249 (548)
T 3i7f_A 170 VFKKQEEDIAKVDEKIAKFLKDNEGKDLTKRPLKDEYAKLLKEKASAQKYVKVSQDTRLDNRMLDLRTVTNIAIFRIQSA 249 (548)
T ss_dssp HHHHHHHHTTCC-------------------------------CCCCCCCCCCCHHHHHTTHHHHTTSHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccCCHHHhhhchhhccCCHHHHHHHHHHHH
Confidence 53321 0011234568999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCeeeecCceeeecCCCCCcceeeeccCCCceeeccChHHHHhhhccCCCceeEEEecceecCcCCCCc
Q 013856 254 VGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHR 333 (435)
Q Consensus 254 i~~~~R~fl~~~gF~EV~TP~l~~~~~egga~~F~~~~~~~~~~L~~Spql~lq~li~~g~~rVfeIgp~FR~E~s~t~r 333 (435)
|+++||+||.++||+||+||+|+++++|||+++|.++||+.++||+||||||||+||++|++|||+||||||||+++|+|
T Consensus 250 i~~~iR~ff~~~gF~EVeTPiL~~~~~egga~~F~v~~~~~~~yL~~Spql~~k~ll~~g~~rVfeI~~~FR~E~~~t~R 329 (548)
T 3i7f_A 250 CCGLFREFLTSQKFVEIHTPKLIGCSSEGGSNIFEVKYFDRKAYLAQSPQLYKQMAIMGDFRKVFEVGPVFRAENSNTRR 329 (548)
T ss_dssp HHHHHHHHHHHTTCEECCCCSBC-------------------CCBCSCTHHHHHHHHTTTCCEEEEEEEECCCSCCCSSS
T ss_pred HHHHHHHHHHhCCCEEEeCCEEecccCCCCcceeEEecCCCceEeccCHHHHHHHHHhcCcCcEEEEeeeEecCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhheeeecccccHHHHHHHHHHHHHHHhHHhhhhhHHHHHHhhhcCCCccccCCCCCccccHHHHHHHHHHcCCC
Q 013856 334 HLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVE 413 (435)
Q Consensus 334 Hl~EFt~lE~e~a~~~~~~d~m~~~e~l~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~rit~~eai~ll~~~g~~ 413 (435)
||||||||||||+|.++|+|+|+++|+||+++++.+.++|..+++.++..+|...+++ .||+||||.||+++|++.|++
T Consensus 330 Hl~EFtmlE~e~af~~d~~d~m~~~E~li~~i~~~~~~~~~~el~~~~~~~~~~~~~~-~pf~rit~~eai~~l~~~g~~ 408 (548)
T 3i7f_A 330 HLTEFEGLDIEMEIVENYHECIDVMEKLFTFIFDEIPKRFPDELKVIRKQYPFEDLIY-RPFLRLTYKEAIEMLRASGET 408 (548)
T ss_dssp CCSCEEEEEEEEECSSCTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHSCCCCCCC-CSCEEEEHHHHHHHHHHTTCC
T ss_pred cchhhhchhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcCCcccccc-CCcceeEHHHHHHHHHHcCCC
Confidence 9999999999999986699999999999999999999999999998888888777776 899999999999999999999
Q ss_pred CCCCCCCCcHHHHHHHHHHhc
Q 013856 414 IDPLGDLNTESERKLGQLVLE 434 (435)
Q Consensus 414 ~~~~~dl~te~E~~L~~~vke 434 (435)
++|++||++++|+.|+++|++
T Consensus 409 ~~~~~dl~~~~e~~l~~~i~~ 429 (548)
T 3i7f_A 409 IGDYDDFTTPQEVKLGELIKA 429 (548)
T ss_dssp CCTTCCCCHHHHHHHHHHHHH
T ss_pred CCCccccchHHHHHHHHHHHH
Confidence 999999999999999999865
No 2
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=100.00 E-value=2.2e-76 Score=621.06 Aligned_cols=357 Identities=49% Similarity=0.767 Sum_probs=318.0
Q ss_pred CCCccCCChhhhh--ccCCCCCCCccccccCcceeEeccccCC-CCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEE
Q 013856 61 ANNYGDVPLQELQ--SVNDPQTGKWSEAVSGREWTEVGALNGS-LKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQC 137 (435)
Q Consensus 61 ~~~Yg~~~~~~~~--~~~~pyp~~~~~~~~~~~~~~i~~l~~~-~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQv 137 (435)
+++||++|+.|++ . .+.++++.|+++... +.|++|+|+|||+++|.+|+.|+|++|||+++.|||
T Consensus 2 ~~~yG~~~~~~s~~~~------------~~~~~~~~~~~l~~~~~~g~~V~v~GwV~~~R~~g~~l~Fi~LrD~~g~iQv 69 (487)
T 1eov_A 2 KDNYGKLPLIQSRDSD------------RTGQKRVKFVDLDEAKDSDKEVLFRARVHNTRQQGATLAFLTLRQQASLIQG 69 (487)
T ss_dssp CSSEEECCCCCCCGGG------------CCCCCCCCGGGCCTTTTTTCEEEEEEEEEEEEECSSSEEEEEEEETTEEEEE
T ss_pred Cccccccccccccccc------------ccccceeEHHHhcccccCCCEEEEEEEEEEeeccCCccEEEEEEECCccEEE
Confidence 5689999998775 3 245678889998776 889999999999999999954599999999999999
Q ss_pred EEeeCCCC-CCHHHHHHHhcCCCCceEEEEEEEecCCccCCC-CceeEEEEEeEEEEeecC-CCCCcccccccchHHHHH
Q 013856 138 LATVKPDS-VSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKG-ATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIE 214 (435)
Q Consensus 138 v~~~~~~~-~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~-~t~~lEI~v~~i~vls~~-~~lP~~~~d~~~~~~~~~ 214 (435)
|++.+... ++++++++++.|+.||+|.|+|+|..++.++++ .+|++||++++|.|||+| ++||++++++++++.+.
T Consensus 70 v~~~~~~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~~~~~g~~El~~~~i~vl~~a~~~lP~~~~~~~~~~~~~- 148 (487)
T 1eov_A 70 LVKANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISETPEALPILLEDASRSEAEA- 148 (487)
T ss_dssp EEECCSSSSSCHHHHHHHTTCCTTCEEEEEEEEEECSSCCTTSSEEEEEEEEEEEEEEECCCSSCSSCHHHHTSCHHHH-
T ss_pred EEeccccccccHHHHHHHhcCCCCCEEEEEEEEEeCCCCCcCCCCCcEEEEEEEEEEeecccccCCcchhhcccccccc-
Confidence 99864323 577889999999999999999999887654443 348899999999999999 89999988765432110
Q ss_pred hhhhcCCCCCCCCcccccccceeeeechhhhhHHHHHHHHHHHHHHHhhcCCeeeecCceeeecCCCCCcceeeeccCCC
Q 013856 215 KASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQ 294 (435)
Q Consensus 215 ~~~~~~~~~~~~~~e~rl~~R~Ldlr~~~~~~i~~~rs~i~~~~R~fl~~~gF~EV~TP~l~~~~~egga~~F~~~~~~~ 294 (435)
....++.+++|+||+|||||||++.++++|++||.|+++||+||.++||+||+||+|+++++++||++|.++|+|+
T Consensus 149 ----~~~~~~~~~~e~r~~~R~LdLr~~~~~~~~~~rs~i~~~ir~~~~~~gF~EV~TPil~~~~~~~ga~~f~~~~~~~ 224 (487)
T 1eov_A 149 ----EAAGLPVVNLDTRLDYRVIDLRTVTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEVTYFKG 224 (487)
T ss_dssp ----HHTTCCCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCSSSSSCCCEEEETTE
T ss_pred ----cccccccCChhhhhhcceeecCCHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeCCEEEEecCCCCcccceeccCCc
Confidence 1123566899999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred ceeeccChHHHHhhhccCCCceeEEEecceecCcCCCCccccchhhheeeecccccHHHHHHHHHHHHHHHhHHhhhhhH
Q 013856 295 SACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCK 374 (435)
Q Consensus 295 ~~~L~~Spql~lq~li~~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~l~~~i~~~~~~~~~ 374 (435)
++||+||||||+|++|++|++|||+||||||||+++++||+||||||||||+|.++|+|+|+++|+||+++++.+.++|.
T Consensus 225 ~~~L~~Spql~~k~l~~~g~~rvy~ig~~FR~E~~~~~Rh~pEFt~le~e~af~~~~~dlm~l~E~ll~~l~~~v~~~~~ 304 (487)
T 1eov_A 225 KAYLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELFVFIFSELPKRFA 304 (487)
T ss_dssp EEEECSCTHHHHHHHHHTTCCEEEEEEEEECCCCCCCTTCCSEEEEEEEEEECSSCTHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred cEEcccChHHHHHHHHhcCCCceEEEeccEecCCCCCCccchhhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHhhch
Confidence 99999999999999999999999999999999999999999999999999999866999999999999999999999999
Q ss_pred HHHHHhhhcCCCccccCCC--CCccccHHHHHHHHHHcCCCCCCCCCCCcHHHHHHHHHHhc
Q 013856 375 KELEAVAKQYPFEPLKYKP--KTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLVLE 434 (435)
Q Consensus 375 ~~i~~~~~~~~~~~~~~~~--p~~rit~~eai~ll~~~g~~~~~~~dl~te~E~~L~~~vke 434 (435)
.+|..+...++...+++.. ||+||+|.||+++|++.|++++|++|+++++|+.||+++.+
T Consensus 305 ~~l~~~~~~~~~~~~~~~~~~~~~ri~~~ea~~~l~~~g~~~~~~~d~~~~~e~~l~~~~~~ 366 (487)
T 1eov_A 305 HEIELVRKQYPVEEFKLPKDGKMVRLTYKEGIEMLRAAGKEIGDFEDLSTENEKFLGKLVRD 366 (487)
T ss_dssp HHHHHHHHHSCCCCCCCCTTCCCEEEEHHHHHHHHHHTTCCCCTTCCCCHHHHHHHHHHHHH
T ss_pred hHHHhhhhhcCCcceecccCCCeeEEEHHHHHHHHHHhCCCCCcccchhhHHHHHHHHHHHH
Confidence 9998888877777777766 99999999999999999999999999999999999998754
No 3
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=100.00 E-value=2.3e-75 Score=605.50 Aligned_cols=314 Identities=33% Similarity=0.518 Sum_probs=288.0
Q ss_pred eEeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEEeeCCCCCCHHHHHHHhcCCCCceEEEEEEEecC
Q 013856 93 TEVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVP 172 (435)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~ 172 (435)
+.|++|..++.|++|+|+|||+++|.+| |++|++|||+++.||||++.+ .++++++++++.|+.||+|.|+|+|..+
T Consensus 5 ~~~~~l~~~~~g~~V~v~Gwv~~~R~~g-~~~Fi~LrD~~g~iQ~v~~~~--~~~~~~~~~~~~l~~~~~V~V~G~v~~~ 81 (438)
T 3nem_A 5 HYSSEITEELNGQKVKVAGWVWEVKDLG-GIKFLWIRDRDGIVQITAPKK--KVDPELFKLIPKLRSEDVVAVEGVVNFT 81 (438)
T ss_dssp CCGGGCCGGGTTCEEEEEEEEEEEEEET-TEEEEEEEETTEEEEEEEETT--TSCHHHHHHGGGCCTTCEEEEEEEEEEC
T ss_pred EEHHHcchhcCCCEEEEEEEEEEEecCC-CeEEEEEEECCeeEEEEEeCC--cCCHHHHHHHhcCCCCCEEEEEEEEEeC
Confidence 5678888778899999999999999999 899999999999999999864 3577889999999999999999999875
Q ss_pred CccCCCCceeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCCcccccccceeeeechhhhhHHHHH
Q 013856 173 DVEIKGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQ 251 (435)
Q Consensus 173 ~~~~~~~t~~lEI~v~~i~vls~~-~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~rl~~R~Ldlr~~~~~~i~~~r 251 (435)
+. .+|++||++++|.|||+| .+||+++++. ...+.++|+++||||||++.++++|++|
T Consensus 82 ~~----~~~~~el~~~~i~vl~~~~~~lP~~~~~~-----------------~~~~~e~r~~~R~Ldlr~~~~~~~~~~R 140 (438)
T 3nem_A 82 PK----AKLGFEILPEKIVVLNRAETPLPLDPTGK-----------------VKAELDTRLDNRFMDLRRPEVMAIFKIR 140 (438)
T ss_dssp TT----STTSEEEEEEEEEEEECBCSSCSSCTTSS-----------------SCCCHHHHHHTHHHHTTSHHHHHHHHHH
T ss_pred CC----CCCcEEEEEEEEEEEecCCCCCCCCcccc-----------------ccCCHHHHhhchHHHhcCHHHHHHHHHH
Confidence 42 236899999999999999 8999986542 1267899999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCeeeecCceeeecCCCCCcceeeeccCCCceeeccChHHHHhhhccCCCceeEEEecceecCcCCC
Q 013856 252 SQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYT 331 (435)
Q Consensus 252 s~i~~~~R~fl~~~gF~EV~TP~l~~~~~egga~~F~~~~~~~~~~L~~Spql~lq~li~~g~~rVfeIgp~FR~E~s~t 331 (435)
|.|+++||+||.++||+||+||+|+++++|||++.|.++|||+++||+||||||||+++++|++|||+||||||||++++
T Consensus 141 s~i~~~iR~f~~~~gF~EVeTPiL~~~~~eg~~~~f~~~~~~~~~yL~~Spql~~q~l~~~g~~rvf~i~~~FR~E~~~t 220 (438)
T 3nem_A 141 SSVFKAVRDFFHENGFIEIHTPKIIATATEGGTELFPMKYFEEDAFLAQSPQLYKQIMMASGLDRVYEIAPIFRAEEHNT 220 (438)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEESSCSSCSSSCCEEEETTEEEEECSCSHHHHHHGGGTTCCEEEEEEEEECCCSSCC
T ss_pred HHHHHHHHHHHHHCCcEEEeCCEEecCCCCCCccceeEeeCCccEEEecChHHHHHHHHhcCCCceEEEcceEECCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccchhhheeeecccccHHHHHHHHHHHHHHHhHHhhhhhHHHHHHhhhcCCCccccCCCCCccccHHHHHHHHHHcC
Q 013856 332 HRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAG 411 (435)
Q Consensus 332 ~rHl~EFt~lE~e~a~~~~~~d~m~~~e~l~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~rit~~eai~ll~~~g 411 (435)
.|||||||||||||+|.++|+|+|+++|+||+++++.+.++|..+++.++..++ .+..||+||||.||+++|++.|
T Consensus 221 ~RH~pEFt~le~e~a~~~~~~d~m~~~E~li~~~~~~v~~~~~~~l~~~~~~l~----~~~~pf~rity~eai~~l~~~g 296 (438)
T 3nem_A 221 TRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAINYVREHNAKELDILNFELE----EPKLPFPRVSYDKALEILGDLG 296 (438)
T ss_dssp TTCCSEEEEEEEEEESCSSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHTTCCCC----CCCSSCCEEEHHHHHHHHHHTT
T ss_pred cccccceeeeeeeeccCccHHHHHHHHHHHHHHHHHHHHhhhhhhHhhcccccc----cCCCCceEEEHHHHHHHHHHcC
Confidence 999999999999999998799999999999999999999999888877665431 1346999999999999999999
Q ss_pred CCCCCCCCCCcHHHHHHHHHHhc
Q 013856 412 VEIDPLGDLNTESERKLGQLVLE 434 (435)
Q Consensus 412 ~~~~~~~dl~te~E~~L~~~vke 434 (435)
++++|++||++++|++|++++.+
T Consensus 297 ~~~~~~~dl~~~~e~~l~~~~~~ 319 (438)
T 3nem_A 297 KEIPWGEDIDTEGERLLGKYMME 319 (438)
T ss_dssp CCCCTTSCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCcHHHHHHHHHhhh
Confidence 99999999999999999999864
No 4
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=100.00 E-value=2.5e-73 Score=601.57 Aligned_cols=328 Identities=21% Similarity=0.300 Sum_probs=269.8
Q ss_pred CCCCCCCccccccCccee-Eecccc--CCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEEeeCCCCCCHH-HH
Q 013856 76 NDPQTGKWSEAVSGREWT-EVGALN--GSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKE-MV 151 (435)
Q Consensus 76 ~~pyp~~~~~~~~~~~~~-~i~~l~--~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~-~~ 151 (435)
.|||||+|+++++..++. .+.++. +...|++|+|+|||+++|.+|+|++|++|||++++||||++.+.. .+++ +.
T Consensus 24 ~~pyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Grv~~~R~~gkk~~F~~LrD~sg~iQvv~~~~~~-~~~~~~~ 102 (521)
T 3bju_A 24 EDPYPHKFHVDISLTDFIQKYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNY-KSEEEFI 102 (521)
T ss_dssp CCSSCSCCCCCSCHHHHHHHHTTCCTTCBCSSCCEEEEEEEEEEEESSSSEEEEEEEETTEEEEEEEEGGGS-SCHHHHH
T ss_pred CCCCCCcCcCccchHHHHHHhhhhccccccCCcEEEEEEEEEEEecCCCCcEEEEEEECCEEEEEEEECCcc-CCHHHHH
Confidence 589999999998876542 333332 345688999999999999999899999999999999999986421 1343 33
Q ss_pred HHHhcCCCCceEEEEEEEecCCccCCCCceeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCCccc
Q 013856 152 RFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDT 230 (435)
Q Consensus 152 ~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lEI~v~~i~vls~~-~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~ 230 (435)
++.+.|+.||+|.|+|+|.+++ +|++||++++|.|||+| .+||++.. +..++++
T Consensus 103 ~~~~~l~~gd~V~V~G~v~~t~------~ge~ei~~~~i~~l~~~~~~lP~~~~-------------------~~~~~e~ 157 (521)
T 3bju_A 103 HINNKLRRGDIIGVQGNPGKTK------KGELSIIPYEITLLSPCLHMLPHLHF-------------------GLKDKET 157 (521)
T ss_dssp HHHHHCCTTCEEEEEEEEEECT------TCCEEEEEEEEEEEECCCSCCCCC-----------------------CCHHH
T ss_pred HHHhcCCCCCEEEEEEEEEecC------CCCEEEEEeEEEEeecCCCCCCCccc-------------------cccChhh
Confidence 4567899999999999998753 47899999999999999 89998632 2368899
Q ss_pred ccccceeeee-chhhhhHHHHHHHHHHHHHHHhhcCCeeeecCceeeecCCCCCcceeee--ccCCCceeeccChHHHHh
Q 013856 231 RLNNRVIDIR-TLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL--DYKGQSACLAQSPQLHKQ 307 (435)
Q Consensus 231 rl~~R~Ldlr-~~~~~~i~~~rs~i~~~~R~fl~~~gF~EV~TP~l~~~~~egga~~F~~--~~~~~~~~L~~Spql~lq 307 (435)
|+++|||||| ++.++++|++||.|+++||+||.++||+||+||+|+++++++++.+|.+ +|||+++||+||||||||
T Consensus 158 r~r~RyLdLr~~~~~~~~~r~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~gGa~a~~F~t~~~~~~~~~yL~~SpqL~lk 237 (521)
T 3bju_A 158 RYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDELGFLEIETPMMNIIPGGAVAKPFITYHNELDMNLYMRIAPELYHK 237 (521)
T ss_dssp HHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCCSSSCCCCEEEETTTTEEEEECSCSHHHHH
T ss_pred hhhhhhhhHhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCceeeccCCCccccceeeecccCCcceEeeCCHHHHHH
Confidence 9999999999 5999999999999999999999999999999999997644434679988 789999999999999999
Q ss_pred hhccCCCceeEEEecceecCcCCCCccccchhhheeeecccccHHHHHHHHHHHHHHHhHHhhhhhHHHHHHhhhcCCCc
Q 013856 308 MSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFE 387 (435)
Q Consensus 308 ~li~~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~l~~~i~~~~~~~~~~~i~~~~~~~~~~ 387 (435)
+|++||++||||||||||||++++ |||||||||||||+|++ |+|+|+++|+||+++++.+.+.+...+...+...+..
T Consensus 238 ~liv~g~~rVyeig~~FR~E~~~t-rH~pEFtmlE~e~af~d-~~dlm~l~E~li~~v~~~v~~~~~~~~~~~~~d~~~~ 315 (521)
T 3bju_A 238 MLVVGGIDRVYEIGRQFRNEGIDL-THNPEFTTCEFYMAYAD-YHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAY 315 (521)
T ss_dssp HHHHTTCCEEEEEEEEECCSCCBT-TBCSEEEEEEEEEETCC-HHHHHHHHHHHHHHHHHHHHSSSEEEECTTCTTSCCE
T ss_pred HHHhcCcCceEEEEcceeCCCCCC-ccchhhhhhhhhhhcCC-HHHHHHHHHHHHHHHHHHHhCCceEEecccccccccc
Confidence 999999999999999999999866 99999999999999996 9999999999999999999876532211111111222
Q ss_pred cccCCCCCccccHHHHHHHHHHcCCCCCCCCCCCcHHH-HHHHHHHh
Q 013856 388 PLKYKPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTESE-RKLGQLVL 433 (435)
Q Consensus 388 ~~~~~~p~~rit~~eai~ll~~~g~~~~~~~dl~te~E-~~L~~~vk 433 (435)
.+++..||+|+||.||++.+ .|+++++++||+++++ ..|.++.+
T Consensus 316 ~~d~~~pf~rit~~eai~~~--~g~~~~~~~~l~~~~~~~~l~~~~~ 360 (521)
T 3bju_A 316 DVDFTPPFRRINMVEELEKA--LGMKLPETNLFETEETRKILDDICV 360 (521)
T ss_dssp EEECCSSCEEEEHHHHHHHH--HTSCCCCGGGTTSHHHHHHHHHHHH
T ss_pred eeccCCCcccccHHHHHHHH--hCCCCCccccCCcHHHHHHHHHHHH
Confidence 46677899999999999854 5788877788988653 44544443
No 5
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=100.00 E-value=1.8e-71 Score=578.98 Aligned_cols=316 Identities=22% Similarity=0.355 Sum_probs=267.2
Q ss_pred cCcceeEeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEEeeCCCCCCHHHHHHHhcCCCCceEEEEE
Q 013856 88 SGREWTEVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIG 167 (435)
Q Consensus 88 ~~~~~~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G 167 (435)
+..+++.|+++ ..+.|++|+|+|||+++|.+|++++|++|||+++.||||++.+. +++ .. .+..|+.||+|.|+|
T Consensus 15 ~~~~~~~i~~~-~~~~g~~V~v~Gwv~~~R~~Gk~~~Fi~LrD~sg~iQvv~~~~~--~~~-~~-~~~~l~~g~~V~V~G 89 (456)
T 3m4p_A 15 ETPIVCNIRDA-AGLEGKLVTFKGWAYHIRKARKTLIFVELRDGSGYCQCVIFGKE--LCE-PE-KVKLLTRECSLEITG 89 (456)
T ss_dssp -CCCCEECCST-TCCCSSEEEEEEEEEEEECCSSSEEEEEEECSSCEEEEEEESTT--TTC-HH-HHTTCCTTCEEEEEE
T ss_pred CcceEEEhhhh-hhcCCCEEEEEEEEEEEecCCCceEEEEEEeCCccEEEEEeccc--chh-hH-HhhcCCCccEEEEEe
Confidence 34678899999 57889999999999999999978999999999999999998632 222 12 356899999999999
Q ss_pred EEecCCccC---CCCc-eeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCCcccccccceeeeech
Q 013856 168 VVSVPDVEI---KGAT-QQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTL 242 (435)
Q Consensus 168 ~v~~~~~~~---~~~t-~~lEI~v~~i~vls~~-~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~rl~~R~Ldlr~~ 242 (435)
+|..++... +.++ |++||++++|.||++| .++|... ....+.|+|+++||||||++
T Consensus 90 ~v~~~~~~~~~~~~~t~g~~El~~~~i~vl~~a~~~~~~~~-------------------~~~~~~e~r~~~R~LdlR~~ 150 (456)
T 3m4p_A 90 RLNAYAGKNHPPEIADILNLEMQVTEWKVIGESPIDLENII-------------------NKDSSIPQKMQNRHIVIRSE 150 (456)
T ss_dssp EEECCCSSSCCCSCTTBCSSEEEEEEEEEEECCCGGGTTTS-------------------CTTCCHHHHHHTHHHHTTSH
T ss_pred EEEecCCcccCcccCCCCcEEEEEeEEEEEecCCCCCcccc-------------------cccCCHHHHhhchHHhhhcH
Confidence 998654321 1223 8899999999999999 5554321 12367899999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHhhcCCeeeecCceeeecCCCCCcceeeeccCCCceeeccChHHHHhhhccCCCceeEEEec
Q 013856 243 ANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGP 322 (435)
Q Consensus 243 ~~~~i~~~rs~i~~~~R~fl~~~gF~EV~TP~l~~~~~egga~~F~~~~~~~~~~L~~Spql~lq~li~~g~~rVfeIgp 322 (435)
.++++|++||.|+++||+||.++||+||+||+|+++++|||+++|.++|||+++||+||||||||++++ |++|||||||
T Consensus 151 ~~~~~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~s~~eGg~~~f~~~~~~~~~~L~~SpqL~lq~l~~-g~~rVyeig~ 229 (456)
T 3m4p_A 151 HTQQVLQLRSEIQWYFRKYYHDNHFTEIQPPTIVKTQCEGGSTLFKLQYFNEPAYLTQSSQLYLESVIA-SLGKSFCMLS 229 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEC------CCCCEEEETTEEEEECSCCHHHHHTTHH-HHSSEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEeCCeeecCCCCCccccccccccCCCcccccCHHHHHHHHHh-ccCcEEEEEh
Confidence 999999999999999999999999999999999998999999999999999999999999999999886 6999999999
Q ss_pred ceecCcCCCCccccchhhheeeecccccHHHHHHHHHHHHHHHhHHhhhhhHHHHHHhhhcCCCccccCCCCCccccHHH
Q 013856 323 VFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEE 402 (435)
Q Consensus 323 ~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~l~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~rit~~e 402 (435)
|||||+++|.|||||||||||||+|++ |+|+|+++|+||+++++.+.++|...++.+...+. ....||+||||.|
T Consensus 230 ~FR~E~~~t~rH~pEFtmlE~e~af~d-~~d~m~~~E~li~~~~~~v~~~~~~~~~~~~~~~~----~~~~pf~rity~e 304 (456)
T 3m4p_A 230 SYRAEQSRTVRHLAEYLHLEAELPFIS-FEDLLNHLEDLVCTVIDNVMAVHGDKIRKMNPHLK----LPTRPFKRMTYAD 304 (456)
T ss_dssp EECCCSCCCSSCCSEEEEEEEEEESCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCC----CCCSSCEEEEHHH
T ss_pred heecCCCCCCcchHHHHHhHHHHhcCC-HHHHHHHHHHHHHHHHHHHhhhhhhhHhhcCcccc----cCCCCCeEeeHHH
Confidence 999999999999999999999999997 99999999999999999999888776655433221 1246899999999
Q ss_pred HHHHHHHcCCC-----CCCCCCCCcHHHHHHHHHHh
Q 013856 403 GVQMLKDAGVE-----IDPLGDLNTESERKLGQLVL 433 (435)
Q Consensus 403 ai~ll~~~g~~-----~~~~~dl~te~E~~L~~~vk 433 (435)
|+++|++.|++ ..|++||++++|++|++.++
T Consensus 305 Ai~~l~~~g~~~~~~~~~~g~~l~~~~e~~l~~~~~ 340 (456)
T 3m4p_A 305 AIKYCNDHGILNKDKPFEYGEDISEKPERQMTDEIG 340 (456)
T ss_dssp HHHHHHHHTCCSSSSCCCTTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCccccCcchHHHHHHHHHHHHHHHhC
Confidence 99999999864 35889999999999998764
No 6
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=100.00 E-value=1.4e-70 Score=578.92 Aligned_cols=310 Identities=23% Similarity=0.296 Sum_probs=256.2
Q ss_pred CCCCccCCChhhhhc---cCCCCCCCccccccCccee-EeccccC---CCCCCEEEEEEEEeeeccCCCceEEEEEEeCC
Q 013856 60 LANNYGDVPLQELQS---VNDPQTGKWSEAVSGREWT-EVGALNG---SLKDQEVLIRGRVHTTRPVGNKLAFVVVRERV 132 (435)
Q Consensus 60 ~~~~Yg~~~~~~~~~---~~~pyp~~~~~~~~~~~~~-~i~~l~~---~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~ 132 (435)
+++.|-..|...++. .++||||+|.++++..++. ...++.. ...|++|+|+|||+++|.+| |++|++|||++
T Consensus 35 ~~~~~~~~r~~k~~~l~~~g~~yp~~~~~t~~~~~~~~~~~~~~~~~~~~~g~~V~v~GwV~~~R~~G-k~~Fi~LrD~s 113 (529)
T 4ex5_A 35 DENQIVAERRDKLRALRDQGIAYPNDFQPTHHAADLQTAYADADKEALEAKSLEVAIAGRMMLKRVMG-KASFATVQDGS 113 (529)
T ss_dssp -CHHHHHHHHHHHHHHHHTSCSSCCCCCCCCCHHHHHHHTTTCCHHHHHHHCCEEEEEEEEEEEEEET-TEEEEEEECSS
T ss_pred ChHHHHHHHHHHHHHHHHcCCCCCCCCcCceEHHHHHHHhhccCccccccCCcEEEEEEEEEeeecCC-CeEEEEEEeCC
Confidence 344455555443332 2569999999987764432 2222221 12389999999999999999 89999999999
Q ss_pred eEEEEEEeeCCCCCCHHHHHHHhcCCCCceEEEEEEEecCCccCCCCceeEEEEEeEEEEeecC-CCCCcccccccchHH
Q 013856 133 STVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEA 211 (435)
Q Consensus 133 ~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lEI~v~~i~vls~~-~~lP~~~~d~~~~~~ 211 (435)
+.||||++.+ .++++++++++.|+.||+|.|+|+|.++ .+|++||++++|.|||+| .+||+...+
T Consensus 114 g~iQvv~~~~--~~~~~~~~~~~~l~~gd~V~V~G~v~~t------~~gelel~~~~i~vLs~a~~plP~k~~~------ 179 (529)
T 4ex5_A 114 GQIQFFVTPA--DVGAETYDAFKKWDLGDIVAARGVLFRT------NKGELSVKCTQLRLLAKALRPLPDKFHG------ 179 (529)
T ss_dssp CEEEEEECHH--HHCHHHHHHHHTCCTTCEEEEEEEEEEC------TTSCEEEEEEEEEEEECCSSCCCC----------
T ss_pred eeEEEEEECC--cCCHHHHHHHhcCCCCCEEEEEEEEEEc------CCCcEEEEEEEEEEEecCCCCCCccccC------
Confidence 9999999864 2466778888999999999999999864 247899999999999999 899986432
Q ss_pred HHHhhhhcCCCCCCCCcccccccceeeee-chhhhhHHHHHHHHHHHHHHHhhcCCeeeecCceeeecCCCCCc--ceee
Q 013856 212 EIEKASKEGVQLPRVNQDTRLNNRVIDIR-TLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGS--AVFR 288 (435)
Q Consensus 212 ~~~~~~~~~~~~~~~~~e~rl~~R~Ldlr-~~~~~~i~~~rs~i~~~~R~fl~~~gF~EV~TP~l~~~~~egga--~~F~ 288 (435)
..++++|+++|||||| ++.++++|++||.|+++||+||+++||+||+||+|+++ +||| .+|.
T Consensus 180 -------------l~d~e~r~r~RyLdLr~~~~~~~~fr~Rs~i~~~iR~ff~~~gFlEVeTPiL~~~--~gGA~a~pF~ 244 (529)
T 4ex5_A 180 -------------LADQETRYRQRYVDLIVTPETRTTFRARTKAIASIRKFMGDADFMEVETPMLHPI--PGGAAAKPFV 244 (529)
T ss_dssp ---------------CTTHHHHTHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESS--CCSSSSCCCE
T ss_pred -------------CcChhhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCeeecc--CCCCcccccc
Confidence 3678999999999998 59999999999999999999999999999999999854 4554 6897
Q ss_pred e--ccCCCceeeccChHHHHhhhccCCCceeEEEecceecCcCCCCccccchhhheeeecccccHHHHHHHHHHHHHHHh
Q 013856 289 L--DYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIF 366 (435)
Q Consensus 289 ~--~~~~~~~~L~~Spql~lq~li~~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~l~~~i~ 366 (435)
+ ++|++++||+||||||||+|+++|++||||||||||||+++ .|||||||||||||+|++ |+|+|+++|+||++++
T Consensus 245 t~~n~~~~~~yL~~SpqLylk~L~v~G~~rVyeIg~~FR~E~~~-~rH~pEFtmlE~e~af~d-~~dlm~l~E~li~~v~ 322 (529)
T 4ex5_A 245 THHNALDMEMFLRIAPELYLKRLIVGGFERVFEINRNFRNEGVS-PRHNPEFTMMEFYAAYTD-YRWLMDFTERLIRQAA 322 (529)
T ss_dssp EEETTTTEEEEECSCSHHHHHHHHHTTCSEEEEEEEEECCSCCB-TTBCSEEEEEEEEEETCC-HHHHHHHHHHHHHHHH
T ss_pred cccccCCcceecccCHHHHHHHHHhcCCCcEEEeehheecCCCC-CCcccHhHhhhhhhhcCC-HHHHHHHHHHHHHHHH
Confidence 6 68999999999999999999999999999999999999984 799999999999999996 9999999999999999
Q ss_pred HHhhhhhHHHHHHhhhcCCCccccCCCCCccccHHHHHHHHH
Q 013856 367 DSLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLK 408 (435)
Q Consensus 367 ~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~rit~~eai~ll~ 408 (435)
+.+.+.+. + .+....+++..||+||||.|||+.+.
T Consensus 323 ~~v~~~~~--~-----~~~~~~id~~~pf~Rity~eAi~~~~ 357 (529)
T 4ex5_A 323 VDALGTAT--I-----QYQGRELDLAQPFHRLTITQAIQKYA 357 (529)
T ss_dssp HHHHSCSE--E-----EETTEEEETTSCCEEEEHHHHHHHHC
T ss_pred HHHhCcCc--e-----ecCceeeccCCCceEEEHHHHHHHHh
Confidence 99987542 1 12334567788999999999998654
No 7
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=100.00 E-value=5.6e-69 Score=556.94 Aligned_cols=309 Identities=32% Similarity=0.529 Sum_probs=279.3
Q ss_pred eEeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEEeeCCCCCCHHHHHHHhcCCCCceEEEEEEEecC
Q 013856 93 TEVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVP 172 (435)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~ 172 (435)
+.|+++...+.|++|+|+|||+++|.+| +++|++|||+++.||||++.+. +++++++.|+.||+|.|+|+|..+
T Consensus 5 ~~~~~l~~~~~~~~V~v~Gwv~~~R~~g-~~~F~~lrD~~g~iQ~v~~~~~-----~~~~~~~~l~~~~~v~v~G~v~~~ 78 (429)
T 1wyd_A 5 HFIADVTPEYDGKEVIWAGWVHLLRDLG-GKKFIILRDKTGLGQVVVDKNS-----SAFGISQELTQESVIQVRGIVKAD 78 (429)
T ss_dssp SCTTTCCGGGTTCEEEEEEEEEEEEEET-TEEEEEEEETTEEEEEEECTTS-----TTHHHHTTCCTTCEEEEEEEEEEC
T ss_pred EEHHHhhHHhCCCEEEEEEEEEEEecCC-CeEEEEEEECCeeEEEEEeCCh-----HHHHHHHhCCCCCEEEEEEEEEec
Confidence 3467776678899999999999999999 8999999999999999997542 456778899999999999999876
Q ss_pred CccCCCCceeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCCcccccccceeeeechhhhhHHHHH
Q 013856 173 DVEIKGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQ 251 (435)
Q Consensus 173 ~~~~~~~t~~lEI~v~~i~vls~~-~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~rl~~R~Ldlr~~~~~~i~~~r 251 (435)
+. .+|++||++++|.|||+| ++||++.++. ...+.|+|+++||||||++.++++|++|
T Consensus 79 ~~----~~~~~el~~~~~~vl~~~~~~~P~~~~~~-----------------~~~~~e~r~~~R~Ldlr~~~~~~~~~~r 137 (429)
T 1wyd_A 79 KR----APRGIELHAEEITLLSKAKAPLPLDVSGK-----------------VKADIDTRLRERVLDLRRQEMQAVIKIQ 137 (429)
T ss_dssp SS----SGGGEEEEEEEEEEEECCCSSCSSCSSSC-----------------CCCCHHHHHHTHHHHHTSHHHHHHHHHH
T ss_pred CC----CCccEEEEEeEEEEeccCCCCCCCCcccc-----------------ccCChhHhhhccceeccCHHHHHHHHHH
Confidence 42 357899999999999999 9999876531 1267899999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCeeeecCceeeecCCCCCcceeeeccCCCceeeccChHHHHhhhccCCCceeEEEecceecCcCCC
Q 013856 252 SQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYT 331 (435)
Q Consensus 252 s~i~~~~R~fl~~~gF~EV~TP~l~~~~~egga~~F~~~~~~~~~~L~~Spql~lq~li~~g~~rVfeIgp~FR~E~s~t 331 (435)
|.|++++|+||.++||+||+||+|+++++||++++|.++|+|+++||+||||||+|+ +++|++|||+||||||+|++++
T Consensus 138 s~i~~~ir~ff~~~gF~eV~TP~l~~~~~e~~~~~f~~~~~~~~~~L~~Spql~~~~-~~~g~~rvf~ig~~FR~E~~~~ 216 (429)
T 1wyd_A 138 SLALKAFRETLYKEGFIEIFTPKIIASATEGGAQLFPVIYFGKEAFLAQSPQLYKEL-MAGVVERVFEVAPAWRAEESDT 216 (429)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEESSCSSTTCCCCEEEETTEEEEECSCCHHHHHH-HHHHHSEEEEEEEEECCCCCCS
T ss_pred HHHHHHHHHHHhhCCCEEEECCEEEeeCCCCCceeEEEecCCceEEecCCcHHHHHH-HHhCcCceEEEcccccccCCcc
Confidence 999999999999999999999999999899999999999999999999999999998 7778999999999999999988
Q ss_pred CccccchhhheeeecccccHHHHHHHHHHHHHHHhHHhhhhhHHHHHHhhhcCCCccccCCCCCccccHHHHHHHHHHcC
Q 013856 332 HRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAG 411 (435)
Q Consensus 332 ~rHl~EFt~lE~e~a~~~~~~d~m~~~e~l~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~rit~~eai~ll~~~g 411 (435)
.||+|||||||+||+|.+ ++|+|+++|+|++++++.+.++|..+|+.++..++. +..||+||||.||++++.+.|
T Consensus 217 ~RH~pEFtqle~e~~~~~-~~dlm~~~e~ll~~l~~~~~~~~~~~l~~~~~~~~~----l~~pf~rity~eA~~~~~~~g 291 (429)
T 1wyd_A 217 PFHLAEFISMDVEMAFAD-YNDVMQLLEKILHNIVKTIKEEGKEELKILNYEPPE----VKIPIKRLKYTEAIEILRSKG 291 (429)
T ss_dssp SSCCSEEEEEEEEEETCC-HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCCCCC----CCSSCEEEEHHHHHHHHHHSS
T ss_pred ccccceeeEeeeeecCCC-HHHHHHHHHHHHHHHHHHHhccchhhhhhccccccc----CCCCccEEEHHHHHHHHHhcC
Confidence 999999999999999997 999999999999999999999998888877654432 246999999999999999999
Q ss_pred CCCCCCCCCCcHHHHHHHHHHhc
Q 013856 412 VEIDPLGDLNTESERKLGQLVLE 434 (435)
Q Consensus 412 ~~~~~~~dl~te~E~~L~~~vke 434 (435)
+++.|++||++++|+.|++.+.+
T Consensus 292 ~~~~~~~~l~~~~e~~l~~~~~~ 314 (429)
T 1wyd_A 292 YNIKFGDDIGTPELRILNEELKE 314 (429)
T ss_dssp CCCCTTSCCCHHHHHHHHHHHCC
T ss_pred CCcccCcccCcHHHHHHHHHhcc
Confidence 98899999999999999998753
No 8
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=100.00 E-value=1e-68 Score=556.39 Aligned_cols=307 Identities=24% Similarity=0.392 Sum_probs=257.1
Q ss_pred EeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEEeeCCCCCCHHHHHHHhcCCCCceEEEEEEEecCC
Q 013856 94 EVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPD 173 (435)
Q Consensus 94 ~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~ 173 (435)
+|+++. .+.|++|+|+|||+++|.+|++++|++|||+++.||||++.+ .++ .++. ..|+.||+|.|+|+|..++
T Consensus 2 ~i~~~~-~~~~~~V~v~Gwv~~~R~~Gk~~~Fi~LrD~~g~iQvv~~~~---~~~-~~~~-~~l~~~~~v~v~G~v~~~~ 75 (435)
T 2xgt_A 2 KIRDLV-KHRNERVCIKGWIHRMRRQGKSLMFFILRDGTGFLQVLLMDK---LCQ-TYDA-LTVNTECTVEIYGAIKEVP 75 (435)
T ss_dssp CGGGGG-GGTTSEEEEEEEEEEEEECTTSEEEEEEECSSCEEEEEEEGG---GGS-SHHH-HHCCTTCEEEEEEEEEECC
T ss_pred chhhhh-hcCCCEEEEEEEEEEecccCCCcEEEEEEECCceEEEEECCc---chh-HHHH-hcCCCCCEEEEEEEEEecC
Confidence 356664 578999999999999999987899999999999999999843 121 1222 3699999999999998753
Q ss_pred ccCCCCceeEEEEEeEEEEeecC-CC--CCcccccccchHHHHHhhhhcCCCCCCCCcccccccceeeeechhhhhHHHH
Q 013856 174 VEIKGATQQVEVQIKKLYCVSRA-AK--TPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRI 250 (435)
Q Consensus 174 ~~~~~~t~~lEI~v~~i~vls~~-~~--lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~rl~~R~Ldlr~~~~~~i~~~ 250 (435)
.. ++.+|++||+++++.||+++ +. .|+..+ ..+.|+|+++||||||++.++++|++
T Consensus 76 ~~-~~~~g~~El~~~~~~vl~~~~p~~~~pl~~~--------------------~~~~e~r~~~R~Ldlr~~~~~~~~r~ 134 (435)
T 2xgt_A 76 EG-KEAPNGHELIADFWKIIGNAPPGGIDNVLNE--------------------EASVDKMLDNRHLVIRGENAAALLRL 134 (435)
T ss_dssp -------TTEEEEEEEEEEEECCCTTHHHHHCC----------------------CCHHHHHHTHHHHTTSHHHHHHHHH
T ss_pred CC-cCCCCcEEEEEEEEEEeecCCCccccccccc--------------------CCCHHHHhhCeeeeecCHHHHHHHHH
Confidence 21 24468899999999999986 21 222211 26889999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCeeeecCceeeecCCCCCcceeeeccCCCceeeccChHHHHhhhccCCCceeEEEecceecCcCC
Q 013856 251 QSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSY 330 (435)
Q Consensus 251 rs~i~~~~R~fl~~~gF~EV~TP~l~~~~~egga~~F~~~~~~~~~~L~~Spql~lq~li~~g~~rVfeIgp~FR~E~s~ 330 (435)
||.|+++||+||.++||+||+||+|++++++||+++|.++|||+++||+||||||||++++ |++||||||||||||+++
T Consensus 135 Rs~i~~~iR~ff~~~gFlEVeTPiL~~s~~eG~~~~F~~~~~g~~~~L~~SpqLylq~l~~-g~~rvfeIg~~FR~E~~~ 213 (435)
T 2xgt_A 135 RAAATRAMREHFYNAGYVEVAPPTLVQTQVEGGSTLFNLDYFGEQSFLTQSSQLYLETCIP-TLGDVFCIAQSYRAEKSR 213 (435)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEESCCSSCTTSCCEEEETTEEEEECSCSHHHHHHHHH-HHCSEEEEEEEECCCSSC
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeEeeccCCCchhceeeccCCcccccCCChHHHHHHhhh-ccCceEEEecceecCCCC
Confidence 9999999999999999999999999998899999999999999999999999999999885 799999999999999999
Q ss_pred CCccccchhhheeeecccccHHHHHHHHHHHHHHHhHHhhhhhHH--HHHHhhhcCCCccccCCCCCccccHHHHHHHHH
Q 013856 331 THRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKK--ELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLK 408 (435)
Q Consensus 331 t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~l~~~i~~~~~~~~~~--~i~~~~~~~~~~~~~~~~p~~rit~~eai~ll~ 408 (435)
++|||||||||||||+|++ |+|+|+++|+||+++++.+.+.+.. .++.+...+. ....||+||||.||+++++
T Consensus 214 t~RH~~EFT~lE~e~af~d-~~d~m~~~E~li~~~~~~v~~~~~~~~~~~~~~~~~~----~~~~pf~rity~ea~~~~~ 288 (435)
T 2xgt_A 214 TRRHLAEYAHVEAECPFIT-LDDLMEKIEELVCDTVDRLLADEEAKKLLEHINPKFQ----PPERPFLRMEYKDAIKWLQ 288 (435)
T ss_dssp CTTCCSEEEEEEEEEESCC-HHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHSTTCC----CCCSSCEEEEHHHHHHHHH
T ss_pred ccccccceeEEEEEEecCC-HHHHHHHHHHHHHHHHHHHhccccchhhhhhcccccc----ccCCCceEEEHHHHHHHHH
Confidence 9999999999999999996 9999999999999999999876543 2333222111 1135899999999999999
Q ss_pred HcCCC------CCCCCCCCcHHHHHHHHHHh
Q 013856 409 DAGVE------IDPLGDLNTESERKLGQLVL 433 (435)
Q Consensus 409 ~~g~~------~~~~~dl~te~E~~L~~~vk 433 (435)
..|+. +.+++|++++.|++|++.+.
T Consensus 289 ~~~~~~~~~~~~~~g~~l~~~~e~~l~~~~~ 319 (435)
T 2xgt_A 289 EHNVENEFGNTFTYGEDIAEAAERFMTDTIN 319 (435)
T ss_dssp HTTCBCTTSCBCCTTSCCCHHHHHHHHHHHT
T ss_pred hcCCCcccccccchhhHHHHHHHHHHHHhcC
Confidence 88764 45778999999999988764
No 9
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=100.00 E-value=8.5e-69 Score=564.64 Aligned_cols=296 Identities=20% Similarity=0.326 Sum_probs=246.7
Q ss_pred CCCCCCCccccccCccee-EeccccC-C--CCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEEeeCCCCCCHHHH
Q 013856 76 NDPQTGKWSEAVSGREWT-EVGALNG-S--LKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMV 151 (435)
Q Consensus 76 ~~pyp~~~~~~~~~~~~~-~i~~l~~-~--~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~ 151 (435)
.|||||+|.++++..+.. ...++.. . ..|++|+|+|||+++|.+| |++|++|||+++.||||++.+. ++++++
T Consensus 32 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gwv~~~R~~g-k~~F~~LrD~sg~iQvv~~~~~--~~~~~~ 108 (504)
T 1e1o_A 32 GVAFPNDFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMG-KASFVTLQDVGGRIQLYVARDS--LPEGVY 108 (504)
T ss_dssp SCSSCCCCCCSCCHHHHHHHHTTCCHHHHHHHCCEEEEEEEEEEEEEET-TEEEEEEEETTEEEEEEEETTT--SSTTHH
T ss_pred CCCCCCCCcCceEHHHHHHHhhccCccccccCCCEEEEEEEEEEEecCC-CcEEEEEEECCeeEEEEEECCc--CCHHHH
Confidence 489999999887654321 1222211 1 1288999999999999999 8999999999999999998542 445566
Q ss_pred H-HHhcCCCCceEEEEEEEecCCccCCCCceeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCCcc
Q 013856 152 R-FVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQD 229 (435)
Q Consensus 152 ~-~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lEI~v~~i~vls~~-~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~e 229 (435)
+ .++.|+.||+|.|+|+|.+++ +|++||++++|.|||+| .+||.... +.++.+
T Consensus 109 ~~~~~~l~~g~~V~V~G~v~~~~------~ge~ei~~~~i~vl~~a~~plP~k~~-------------------~~~~~e 163 (504)
T 1e1o_A 109 NDQFKKWDLGDIIGARGTLFKTQ------TGELSIHCTELRLLTKALRPLPDKFH-------------------GLQDQE 163 (504)
T ss_dssp HHTGGGCCTTCEEEEEEEEEECT------TCCEEEEEEEEEEEECCSSCCCC--------------------------TT
T ss_pred HHHHhcCCCCCEEEEEEEEEecC------CceEEEEEEEEEEecccCCCCCcccc-------------------CCcChh
Confidence 6 678999999999999998743 47899999999999999 89995421 235789
Q ss_pred cccccceeeee-chhhhhHHHHHHHHHHHHHHHhhcCCeeeecCceeeecCCCCCcceeee--ccCCCceeeccChHHHH
Q 013856 230 TRLNNRVIDIR-TLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL--DYKGQSACLAQSPQLHK 306 (435)
Q Consensus 230 ~rl~~R~Ldlr-~~~~~~i~~~rs~i~~~~R~fl~~~gF~EV~TP~l~~~~~egga~~F~~--~~~~~~~~L~~Spql~l 306 (435)
+|+++|||||| ++.++++|++||.|+++||+||.++||+||+||+|+++..++++.+|.| ++||+++||+|||||||
T Consensus 164 ~r~r~RyLdL~~~~~~~~~~r~Rs~i~~~iR~f~~~~gFlEVeTPiL~~~~~Ga~ar~F~t~~~~~~~~~yL~~SpqLyl 243 (504)
T 1e1o_A 164 VRYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITHHNALDLDMYLRIAPELYL 243 (504)
T ss_dssp HHHHTHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTCEECCCCSEESSCCSSCCCCCEEEETTTTEEEEECSCSHHHH
T ss_pred hhhhccchhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCeEEecCCCCcccceEeccCCCCceEEeccCHHHHH
Confidence 99999999996 7999999999999999999999999999999999996533334679998 78999999999999999
Q ss_pred hhhccCCCceeEEEecceecCcCCCCccccchhhheeeecccccHHHHHHHHHHHHHHHhHHhhhhhHHHHHHhhhcCCC
Q 013856 307 QMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPF 386 (435)
Q Consensus 307 q~li~~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~l~~~i~~~~~~~~~~~i~~~~~~~~~ 386 (435)
|+|++||++||||||||||||+++ .|||||||||||||+|++ |+|+|+++|+||+++++.+.++|. |. +..
T Consensus 244 k~L~v~G~~rVyeIg~~FR~E~~~-~rH~pEFt~lE~e~af~d-~~dlm~l~E~li~~~~~~v~~~~~--i~-----~~~ 314 (504)
T 1e1o_A 244 KRLVVGGFERVFEINRNFRNEGIS-VRHNPEFTMMELYMAYAD-YHDLIELTESLFRTLAQEVLGTTK--VT-----YGE 314 (504)
T ss_dssp HHHHHHTCCEEEEEEEEECCCCCC-C-CCSEEEEEEEEEESCC-HHHHHHHHHHHHHHHHHHHHSSSE--EE-----ETT
T ss_pred HHHhhcCCCcEEEEcccccCCCCC-ccccCceeeeeeeecCCC-HHHHHHHHHHHHHHHHHHHhCCce--ee-----eCC
Confidence 999999999999999999999985 499999999999999996 999999999999999999987763 21 222
Q ss_pred ccccCCCCCccccHHHHHHHHH
Q 013856 387 EPLKYKPKTLRLTFEEGVQMLK 408 (435)
Q Consensus 387 ~~~~~~~p~~rit~~eai~ll~ 408 (435)
..+++..||+||||.||++.+.
T Consensus 315 ~~i~~~~pf~rity~eAi~~~~ 336 (504)
T 1e1o_A 315 HVFDFGKPFEKLTMREAIKKYR 336 (504)
T ss_dssp EEEETTSCCEEEEHHHHHHHHS
T ss_pred EeeccCCCceEEeHHHHHHHHc
Confidence 3456778999999999998654
No 10
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=100.00 E-value=3.8e-68 Score=551.74 Aligned_cols=310 Identities=28% Similarity=0.416 Sum_probs=278.0
Q ss_pred eEeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEEeeCCCCCCHHHHHHHhcCCCCceEEEEEEEecC
Q 013856 93 TEVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVP 172 (435)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~ 172 (435)
+.|+++...+.|++|+|+|||+++|.+| |++|++|||+++.||||++.+ .++++++++++.|+.||+|.|+|+|..+
T Consensus 5 ~~~~~l~~~~~~~~V~v~G~v~~~R~~g-~~~F~~lrD~~g~iQ~v~~~~--~~~~~~~~~~~~l~~~~~v~v~G~v~~~ 81 (434)
T 1x54_A 5 VYCQEVKPELDGKKVRLAGWVYTNMRVG-KKIFLWIRDSTGIVQAVVAKN--VVGEETFEKAKKLGRESSVIVEGIVKAD 81 (434)
T ss_dssp CCGGGCCGGGTTCEEEEEEEEEEEEEET-TEEEEEEEETTEEEEEEECHH--HHCHHHHHHHHTCCTTCEEEEEEEEEEC
T ss_pred EEHHHhhHHhCCCEEEEEEEEEEEecCC-CeEEEEEEECCEEEEEEEECC--cCCHHHHHHHhcCCCCCEEEEEEEEEec
Confidence 4567777678899999999999999999 899999999999999999753 2466788888999999999999999876
Q ss_pred CccCCCCceeEEEEEeEEEEeecCCCCCc--ccccccchHHHHHhhhhcCCCCCCCCcccccccceeeeechhhhhHHHH
Q 013856 173 DVEIKGATQQVEVQIKKLYCVSRAAKTPI--TIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRI 250 (435)
Q Consensus 173 ~~~~~~~t~~lEI~v~~i~vls~~~~lP~--~~~d~~~~~~~~~~~~~~~~~~~~~~~e~rl~~R~Ldlr~~~~~~i~~~ 250 (435)
+ +.+|++||++++|.|||+|++||+ +... .+.|+|+++||||||++.++++|++
T Consensus 82 ~----~~~~~~el~~~~~~vl~~~~~~P~~~~~~~--------------------~~~e~r~~~R~Ldlr~~~~~~~~~~ 137 (434)
T 1x54_A 82 E----RAPGGAEVHVEKLEVIQAVSEFPIPENPEQ--------------------ASPELLLDYRHLHIRTPKASAIMKV 137 (434)
T ss_dssp T----TSGGGEEEEEEEEEEEECCSCCSSCSSGGG--------------------SCHHHHHHTHHHHTTSHHHHHHHHH
T ss_pred C----CCCccEEEEEeEEEEeecCCCCCCcccccC--------------------CCHHHhhhceeeeecCHHHHHHHHH
Confidence 4 234789999999999999988998 5332 5789999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCeeeecCceeeecCCCCCcceeeeccCCCceeeccChHHHHhhhccCCCceeEEEecceecCcCC
Q 013856 251 QSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSY 330 (435)
Q Consensus 251 rs~i~~~~R~fl~~~gF~EV~TP~l~~~~~egga~~F~~~~~~~~~~L~~Spql~lq~li~~g~~rVfeIgp~FR~E~s~ 330 (435)
||.|++.+|+||.++||+||+||+|+++.++|++++|.++|+|+++||+||||||+|+ +++|++|||+||||||+|+++
T Consensus 138 rs~i~~~ir~~f~~~gF~eVeTP~l~~~~~e~~~~~f~~~~~~~~~~Lr~Spel~~~~-~~~g~~rvf~ig~~FR~E~~~ 216 (434)
T 1x54_A 138 KETLIMAAREWLLKDGWHEVFPPILVTGAVEGGATLFKLKYFDKYAYLSQSAQLYLEA-AIFGLEKVWSLTPSFRAEKSR 216 (434)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEESCCSSCGGGCCEEEETTEEEEECSCSHHHHHH-HHHHHSEEEEEEEEECCCCCC
T ss_pred HHHHHHHHHHHHHHCCCEEEeCcEEEeecCCCCceeEEEeecCCcEEeccChHHHHHH-HhcCccceEEEecceecCCCC
Confidence 9999999999999999999999999998899999999999999999999999999998 677899999999999999998
Q ss_pred CCccccchhhheeeecccccHHHHHHHHHHHHHHHhHHhhhhhHHHHHHhhhcCCCccccCCCCCccccHHHHHHHHHHc
Q 013856 331 THRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDA 410 (435)
Q Consensus 331 t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~l~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~rit~~eai~ll~~~ 410 (435)
+.||+|||||||+||+|.+ ++|+|+++|+|++++++.+.++|..+|+.++..++.-. .+..||+||||.||++++++.
T Consensus 217 ~~RH~pEFtqle~e~~~~~-~~dlm~~~e~ll~~l~~~v~~~~~~~i~~~~~~~~~~~-~~~~pf~rity~ea~~~~~~~ 294 (434)
T 1x54_A 217 TRRHLTEFWHLELEAAWMD-LWDIMKVEEELVSYMVQRTLELRKKEIEMFRDDLTTLK-NTEPPFPRISYDEAIDILQSK 294 (434)
T ss_dssp CSSCCSEEEEEEEEEETCC-HHHHHHHHHHHHHHHHHHHHHHCHHHHHTTCSCCHHHH-TCCSSCCEEEHHHHHHHHHHT
T ss_pred CcccccEEEEeeEEEcCCC-HHHHHHHHHHHHHHHHHHHhhhchhhhhhcCccccccc-ccCCCCcEEEHHHHHHHHHhc
Confidence 8999999999999999997 99999999999999999999988888876665433110 134699999999999999999
Q ss_pred CCCCCCCCCCCcHHHHHHHHHH
Q 013856 411 GVEIDPLGDLNTESERKLGQLV 432 (435)
Q Consensus 411 g~~~~~~~dl~te~E~~L~~~v 432 (435)
|+++.|++||++++|++|++.+
T Consensus 295 g~~~~~~~dl~~~~e~~l~~~~ 316 (434)
T 1x54_A 295 GVNVEWGDDLGADEERVLTEEF 316 (434)
T ss_dssp TCCCCTTCCCCHHHHHHHHTTC
T ss_pred CCCcccCCccChHHHHHHHHHh
Confidence 9988999999999999998754
No 11
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=100.00 E-value=8.2e-68 Score=556.18 Aligned_cols=296 Identities=21% Similarity=0.319 Sum_probs=249.7
Q ss_pred CCCCCCCccccccCccee-EeccccC---CCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEEeeCCCCCCHHHH
Q 013856 76 NDPQTGKWSEAVSGREWT-EVGALNG---SLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMV 151 (435)
Q Consensus 76 ~~pyp~~~~~~~~~~~~~-~i~~l~~---~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~ 151 (435)
.|||||+|.++++..+.. ...++.. ...|++|+|+|||+++|.+| |++|++|||+++.||||++.+ .++++++
T Consensus 24 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gwv~~~R~~g-k~~F~~LrD~sg~iQvv~~~~--~~~~~~~ 100 (493)
T 3a74_A 24 VDPFGKRFERTHKAEELFELYGDLSKEELEEQQIEVAVAGRIMTKRGMG-KAGFAHIQDVTGQIQIYVRQD--DVGEQQY 100 (493)
T ss_dssp CCTTCCCCCCSCCHHHHHHHHTTSCHHHHHHHCCEEEEEEEEEEEEEET-TEEEEEEEETTEEEEEEEEHH--HHHHHHH
T ss_pred CCCCCCCCcCceehHHHHHhhccccchhhccCCCEEEEEEEEEEEecCC-CcEEEEEEECCEeEEEEEECC--cCCHHHH
Confidence 589999999887654321 2222211 01288999999999999999 899999999999999999753 2345677
Q ss_pred HHHhcCCCCceEEEEEEEecCCccCCCCceeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCCccc
Q 013856 152 RFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDT 230 (435)
Q Consensus 152 ~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lEI~v~~i~vls~~-~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~ 230 (435)
+.++.|+.||+|.|+|+|.+++ +|++||++++|.|||+| .+||.... +..+.++
T Consensus 101 ~~~~~l~~g~~v~V~G~v~~~~------~ge~ei~~~~i~vl~~~~~plP~k~~-------------------~~~~~e~ 155 (493)
T 3a74_A 101 ELFKISDLGDIVGVRGTMFKTK------VGELSIKVSSYEFLTKALRPLPEKYH-------------------GLKDIEQ 155 (493)
T ss_dssp HHHHHCCTTCEEEEEEEEEECT------TCCEEEEEEEEEEEECCSSCCCCC------------------------CHHH
T ss_pred HHHhcCCCCCEEEEEEEEEeCC------CCcEEEEEEEEEEcccccCCCCcccc-------------------CCCCHhh
Confidence 7788999999999999998743 47899999999999999 99995421 2367899
Q ss_pred ccccceeeee-chhhhhHHHHHHHHHHHHHHHhhcCCeeeecCceeeecCCCCCcceeee--ccCCCceeeccChHHHHh
Q 013856 231 RLNNRVIDIR-TLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL--DYKGQSACLAQSPQLHKQ 307 (435)
Q Consensus 231 rl~~R~Ldlr-~~~~~~i~~~rs~i~~~~R~fl~~~gF~EV~TP~l~~~~~egga~~F~~--~~~~~~~~L~~Spql~lq 307 (435)
|+++|||||| ++.++++|++||.|+++||+||.++||+||+||+|+++.+++++++|.+ ++||+++||+||||||||
T Consensus 156 r~r~RyldL~~~~~~~~~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~Ga~a~~F~~~~~~~~~~~yLr~SpqLylk 235 (493)
T 3a74_A 156 RYRQRYLDLIMNPESKKTFITRSLIIQSMRRYLDSHGYLEVETPMMHAVAGGAAARPFITHHNALDMTLYMRIAIELHLK 235 (493)
T ss_dssp HHHTHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCCSSSSCCCEEEETTTTEEEEECSCSHHHHH
T ss_pred hhhcchhhhhcCHHHHHHHHHHHHHHHHHHHHHHhCCeEEEECCeEEecCCCCcccceEecccCCCceeEEecCHHHHHH
Confidence 9999999996 6999999999999999999999999999999999997644445679988 789999999999999999
Q ss_pred hhccCCCceeEEEecceecCcCCCCccccchhhheeeecccccHHHHHHHHHHHHHHHhHHhhhhhHHHHHHhhhcCCCc
Q 013856 308 MSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFE 387 (435)
Q Consensus 308 ~li~~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~l~~~i~~~~~~~~~~~i~~~~~~~~~~ 387 (435)
++++||++|||+||||||||++++ |||||||||||||+|++ |+|+|+++|+||+++++.+.++|. +. +...
T Consensus 236 ~l~v~G~~rVyeig~~FR~E~~~~-rH~pEFT~lE~e~af~d-~~dlm~l~E~ll~~l~~~v~~~~~--i~-----~~~~ 306 (493)
T 3a74_A 236 RLIVGGLEKVYEIGRVFRNEGIST-RHNPEFTMLELYEAYAD-FRDIMKLTENLIAHIATEVLGTTK--IQ-----YGEH 306 (493)
T ss_dssp HHHHTTCCEEEEEEEEECCCCCBT-TBCSEEEEEEEEEETCC-HHHHHHHHHHHHHHHHHHHHSCSE--EE-----ETTE
T ss_pred HHhhcccCceEEECccccCCCCCc-ccCCceeEEEEEecCCC-HHHHHHHHHHHHHHHHHHHhCCce--Ee-----eCCE
Confidence 999999999999999999999854 99999999999999997 999999999999999999987763 21 2223
Q ss_pred cccCCCCCccccHHHHHHHHH
Q 013856 388 PLKYKPKTLRLTFEEGVQMLK 408 (435)
Q Consensus 388 ~~~~~~p~~rit~~eai~ll~ 408 (435)
.+++..||+||||.||++.+.
T Consensus 307 ~i~~~~pf~rity~eai~~~~ 327 (493)
T 3a74_A 307 LVDLTPEWRRLHMVDAIKEYV 327 (493)
T ss_dssp EEECCSSCEEEEHHHHHHHHT
T ss_pred eeccCCCcceeeHHHHHHHHh
Confidence 456778999999999998553
No 12
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=100.00 E-value=1.6e-67 Score=545.09 Aligned_cols=301 Identities=34% Similarity=0.481 Sum_probs=220.6
Q ss_pred eeEeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEEeeCCCCCCHHHHHHHhcCC-CCceEEEEEEEe
Q 013856 92 WTEVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLS-NESIVDVIGVVS 170 (435)
Q Consensus 92 ~~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~-~esiV~V~G~v~ 170 (435)
++.|+++. ++.|++|+|+|||+++|.+| |++|++|||+++.||||++. +.|+ .||+|.|+|+|.
T Consensus 2 ~~~~~~l~-~~~~~~V~v~Gwv~~~R~~g-~~~F~~lrD~~g~iQ~v~~~-------------~~l~~~~~~v~v~G~v~ 66 (422)
T 1n9w_A 2 RVLVRDLK-AHVGQEVELLGFLHWRRDLG-RIQFLLLRDRSGVVQVVTGG-------------LKLPLPESALRVRGLVV 66 (422)
T ss_dssp BCCGGGGG-GCTTSEEEEEEEEEEEEECS-SEEEEEEEETTEEEEEEEES-------------CCCCCTTCEEEEEEEEE
T ss_pred eEEHHHHH-hcCCCEEEEEEEEEEEecCC-CeEEEEEEECCEEEEEEEEc-------------cccCCCCCEEEEEEEEE
Confidence 34567777 68899999999999999999 89999999999999999974 4689 999999999998
Q ss_pred cCCccCCCCceeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCCcccccccceeeeechhhhhHHH
Q 013856 171 VPDVEIKGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFR 249 (435)
Q Consensus 171 ~~~~~~~~~t~~lEI~v~~i~vls~~-~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~rl~~R~Ldlr~~~~~~i~~ 249 (435)
.++. .+|++||++++|.|||+| .+||++..+. .+..+.|+|+++||||||++.++++|+
T Consensus 67 ~~~~----~~~~~el~~~~~~vl~~~~~~~P~~~~~~----------------~~~~~~e~r~~~R~Ldlr~~~~~~~~~ 126 (422)
T 1n9w_A 67 ENAK----APGGLEVQAKEVEVLSPALEPTPVEIPKE----------------EWRANPDTLLEYRYVTLRGEKARAPLK 126 (422)
T ss_dssp ECTT----STTSEEEEEEEEEEEECCCSCCC---------------------------------CHHHHTTSHHHHHHHH
T ss_pred ecCC----CCccEEEEEeEEEEeccCCcCCCCCcccc----------------ccCCCHHHHhhhhHHhhcCHHHHHHHH
Confidence 7642 247899999999999999 9999876531 123678999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCeeeecCceeeecCCCCCcceeeeccCCCceeeccChHHHHhhhccCCCceeEEEecceecCcC
Q 013856 250 IQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDS 329 (435)
Q Consensus 250 ~rs~i~~~~R~fl~~~gF~EV~TP~l~~~~~egga~~F~~~~~~~~~~L~~Spql~lq~li~~g~~rVfeIgp~FR~E~s 329 (435)
+||.|++++|+||.++||+||+||+|++++++|++++|.++|+|+++||+||||||+|+++ +|++|||+||||||+|++
T Consensus 127 ~rs~i~~~ir~~f~~~gF~EV~TPil~~~~~e~~~~~f~~~~~g~~~~L~~Spel~~~~l~-~g~~rvf~ig~~FR~E~~ 205 (422)
T 1n9w_A 127 VQAALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGSGLFGVDYFEKRAYLAQSPQLYKQIMV-GVFERVYEVAPVWRMEEH 205 (422)
T ss_dssp HHHHHHHHHHHHHHHTTCEECCCC----------------------------CHHHHHHHH-HHHSEEEEEEEC------
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCEEEEeCCCCCceeEEEeeCCCcEEeeeCHHHHHHHHh-hCCCceeEEeCceECCCC
Confidence 9999999999999999999999999999889999999999999999999999999999987 779999999999999999
Q ss_pred CCCccccchhhheeeecccccHHHHHHHHHHHHHHHhHHhhhhhHHHHHHhhhcCCCccccCCCCCccccHHHHHHHHHH
Q 013856 330 YTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKD 409 (435)
Q Consensus 330 ~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~l~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~rit~~eai~ll~~ 409 (435)
++.||+|||||||+||+|.++|+|+|+++|+|++++++.+.++|..+|+.++..++.. ..||+||||.||+++|++
T Consensus 206 ~~~RH~pEFtqle~e~~~~~d~~dlm~l~e~ll~~l~~~~~~~~~~~i~~~~~~~~~~----~~pf~rity~eA~~~~~~ 281 (422)
T 1n9w_A 206 HTSRHLNEYLSLDVEMGFIADEEDLMRLEEALLAEMLEEALNTAGDEIRLLGATWPSF----PQDIPRLTHAEAKRILKE 281 (422)
T ss_dssp -------CCEEEEEEEESCSSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHTTCCCCCC----SSSCCEEEHHHHHHHHHH
T ss_pred CCCcccceeEEeeeeeeCCCCHHHHHHHHHHHHHHHHHHHhccchhhhhhcCcccccc----CCCcceeEHHHHHHHHHh
Confidence 8899999999999999999449999999999999999999998988888776543321 168999999999999998
Q ss_pred cCCCCCCCCCCCcHHHHHHHHHHh
Q 013856 410 AGVEIDPLGDLNTESERKLGQLVL 433 (435)
Q Consensus 410 ~g~~~~~~~dl~te~E~~L~~~vk 433 (435)
.| ++.|++|+++++|++|++.+.
T Consensus 282 ~~-~~~~~~dl~~~~e~~l~~~~~ 304 (422)
T 1n9w_A 282 EL-GYPVGQDLSEEAERLLGEYAK 304 (422)
T ss_dssp TS-CCCCCSSCCHHHHHHHHHHHH
T ss_pred cC-CcccccccCcHHHHHHHHHHH
Confidence 88 778889999999999999885
No 13
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=100.00 E-value=3.4e-64 Score=537.41 Aligned_cols=278 Identities=28% Similarity=0.414 Sum_probs=237.7
Q ss_pred eEeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEEeeCCCCCCHHHHHHHhcCCCCceEEEEEEEecC
Q 013856 93 TEVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVP 172 (435)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~ 172 (435)
+.|+++...+.|++|+|+|||+++|.+| +++|++|||+++.||||++.+. + ++++++.|+.||+|.|+|+|..+
T Consensus 5 ~~~~~l~~~~~g~~V~l~GwV~~~R~~G-~~~Fi~LrD~~g~iQvv~~~~~----~-~~~~~~~l~~e~~V~V~G~v~~~ 78 (580)
T 1l0w_A 5 HYAGSLRETHVGEEVVLEGWVNRRRDLG-GLIFLDLRDREGLVQLVAHPAS----P-AYATAERVRPEWVVRAKGLVRLR 78 (580)
T ss_dssp SCGGGCCGGGTTCEEEEEEEEEEEEECS-SCEEEEEEETTEEEEEEECTTS----T-THHHHTTCCTTCEEEEEEEEEEC
T ss_pred EEHHHhHHHhCCCEEEEEEEEEEEecCC-CeEEEEEEECCeeEEEEEeCCh----h-HHHHHhcCCCCcEEEEEEEEEcC
Confidence 4567787788899999999999999999 8999999999999999997532 2 57788899999999999999875
Q ss_pred CccC-CCCceeEEEEEeEEEEeecCCCCCcccccccchHHHHHhhhhcCCCCCCCCcccccccceeeeechhhhhHHHHH
Q 013856 173 DVEI-KGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQ 251 (435)
Q Consensus 173 ~~~~-~~~t~~lEI~v~~i~vls~~~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~rl~~R~Ldlr~~~~~~i~~~r 251 (435)
+... +..+|++||++++|.|||+|.++|+.+.+..++ ...+.++.++||+|||||||++.++++|++|
T Consensus 79 ~~~~~~~~~ge~Ei~~~~i~vl~~a~~lP~~i~~~~~~-----------~~~~~~~~e~Rl~~RyLdLR~~~~~~~l~~R 147 (580)
T 1l0w_A 79 PEPNPRLATGRVEVELSALEVLAEAKTPPFPVDAGWRG-----------EEEKEASEELRLKYRYLDLRRRRMQENLRLR 147 (580)
T ss_dssp SSCCTTSTTTTEEEEEEEEEEEECCCCCSSCCSSGGGT-----------CCCCCCCHHHHHHTHHHHTTSHHHHHHHHHH
T ss_pred CCcCccCCCccEEEEEeEEEEeccCcCCCCCcchhccc-----------cccccCCHHHhhhhhHHHhcCHHHHHHHHHH
Confidence 4222 224688999999999999996678776553221 0123478999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCeeeecCceeeecCCCCCcceeeecc--CCCce-eeccChHHHHhhhccCCCceeEEEecceecCc
Q 013856 252 SQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDY--KGQSA-CLAQSPQLHKQMSICGDFGRVFETGPVFRAED 328 (435)
Q Consensus 252 s~i~~~~R~fl~~~gF~EV~TP~l~~~~~egga~~F~~~~--~~~~~-~L~~Spql~lq~li~~g~~rVfeIgp~FR~E~ 328 (435)
|.|+++||+||.++||+||+||+|+++++|| |.+|.|.+ ++..+ ||+||||||||+||+||++||||||||||||+
T Consensus 148 s~i~~~iR~fl~~~gF~EVeTPiL~~s~~eG-Ar~F~v~~~~~~~~~y~L~qSPQl~kq~Lmv~G~~rvfqI~~~FR~E~ 226 (580)
T 1l0w_A 148 HRVIKAIWDFLDREGFVQVETPFLTKSTPEG-ARDFLVPYRHEPGLFYALPQSPQLFKQMLMVAGLDRYFQIARCFRDED 226 (580)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSSBCCCSSS-SCCCEEECTTSTTEEEECCSCSHHHHHHHHHTTCSEEEEEEEEECCCC
T ss_pred HHHHHHHHHHHHhCCcEEEeCCEEecCCCCC-CCCccccccccCCceeECccCHHHHHHHHHHhccCCeEEEeceeeCCC
Confidence 9999999999999999999999999877764 67798853 44444 59999999999999999999999999999999
Q ss_pred CCCCccccchhhheeeecccccHHHHHHHHHHHHHHHhHHhhhhhHHHHHHhhhcCCCccccCCCCCccccHHHHHHHH
Q 013856 329 SYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQML 407 (435)
Q Consensus 329 s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~l~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~rit~~eai~ll 407 (435)
+++.|| ||||||||||+|.+ |+|+|+++|+||+++++.+.+ .++..||+||||.||++.+
T Consensus 227 ~~~~r~-pEFT~lE~e~af~d-~~dvm~~~E~li~~i~~~v~~-----------------~~~~~pf~rity~eA~~~~ 286 (580)
T 1l0w_A 227 LRADRQ-PDFTQLDLEMSFVE-VEDVLELNERLMAHVFREALG-----------------VELPLPFPRLSYEEAMERY 286 (580)
T ss_dssp CCSSCC-SEEEEEEEEEESCC-HHHHHHHHHHHHHHHHHHHTC-----------------CCCCSSCCEEEHHHHHHHH
T ss_pred CCCCcC-CCccceeeeecCCC-HHHHHHHHHHHHHHHHHHHhC-----------------CccCCCccEEEHHHHHHHh
Confidence 977655 59999999999997 999999999999999998753 1234589999999999865
No 14
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=100.00 E-value=9.2e-63 Score=527.55 Aligned_cols=270 Identities=27% Similarity=0.409 Sum_probs=233.7
Q ss_pred eEeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEEeeCCCCCCHHHHHHHhcCCCCceEEEEEEEecC
Q 013856 93 TEVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVP 172 (435)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~ 172 (435)
+.++++...+.|++|+|+|||+++|.+| +++|++|||+++.||||++.+ ..+++++++.|+.||+|.|+|+|..+
T Consensus 4 ~~~~~l~~~~~g~~V~l~GwV~~~R~~G-~~~Fi~LrD~~g~iQvv~~~~----~~~~~~~~~~l~~e~~V~V~G~v~~~ 78 (585)
T 1c0a_A 4 EYCGQLRLSHVGQQVTLCGWVNRRRDLG-SLIFIDMRDREGIVQVFFDPD----RADALKLASELRNEFCIQVTGTVRAR 78 (585)
T ss_dssp SCGGGCCGGGTTCEEEEEEEEEEEEECS-SCEEEEEEETTEEEEEEECGG----GHHHHHHHTTCCTTCEEEEEEEEEEC
T ss_pred eEHHHHHHHhCCCEEEEEEEEEEEecCC-CcEEEEEEECCeeEEEEEeCC----chHHHHHHhcCCCCCEEEEEeEEEcc
Confidence 3567777778899999999999999999 899999999999999999753 25677888999999999999999875
Q ss_pred Ccc---CCCCceeEEEEEeEEEEeecCCCCCcccccccchHHHHHhhhhcCCCCCCCCcccccccceeeeechhhhhHHH
Q 013856 173 DVE---IKGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFR 249 (435)
Q Consensus 173 ~~~---~~~~t~~lEI~v~~i~vls~~~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~rl~~R~Ldlr~~~~~~i~~ 249 (435)
+.. .+..+|++||++++|.|||+|.++|+.+.+ .++.++||+|||||||++.++++|+
T Consensus 79 ~~~~~n~~~~~geiEl~~~~i~vl~~a~~lP~~~~~-------------------~~~~e~Rl~~R~LdLR~~~~~~~l~ 139 (585)
T 1c0a_A 79 DEKNINRDMATGEIEVLASSLTIINRADVLPLDSNH-------------------VNTEEARLKYRYLDLRRPEMAQRLK 139 (585)
T ss_dssp CTTTCCTTSTTTTEEEEEEEEEEEECCCSCSSCTTS-------------------CCCHHHHHHTHHHHTTSHHHHHHHH
T ss_pred CcccccccCCCccEEEEEeEEEEEeccCCCCCCccc-------------------cCCHhHhhhchHhhhcCHHHHHHHH
Confidence 432 122468899999999999999667876543 2678999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCeeeecCceeeecCCCCCcceeeecc--C-CCceeeccChHHHHhhhccCCCceeEEEecceec
Q 013856 250 IQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDY--K-GQSACLAQSPQLHKQMSICGDFGRVFETGPVFRA 326 (435)
Q Consensus 250 ~rs~i~~~~R~fl~~~gF~EV~TP~l~~~~~egga~~F~~~~--~-~~~~~L~~Spql~lq~li~~g~~rVfeIgp~FR~ 326 (435)
+||.|+++||+||+++||+||+||+|+++++|| |.+|.|.+ + +..+||+||||||||+||+||++|||||||||||
T Consensus 140 ~Rs~i~~~iR~fl~~~gFlEVeTPiL~~s~~eG-Ar~F~v~~~~~~~~~y~L~qSPQl~kq~Lmv~G~~rvfqI~~~FR~ 218 (585)
T 1c0a_A 140 TRAKITSLVRRFMDDHGFLDIETPMLTKATPEG-ARDYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRD 218 (585)
T ss_dssp HHHHHHHHHHHHHHHTTCEECCCCSSBCCCSSS-SCCCEEECSSSTTCEEECCSCSHHHHHHHHHTTCCEEEEEEEEECC
T ss_pred HHHHHHHHHHHHHHhCCcEEEeCCEEecCCCCC-CccceecccccCCceEeCccCHHHHHHHHHhcCCCceEEEeceeec
Confidence 999999999999999999999999999877775 67798853 4 4445699999999999999999999999999999
Q ss_pred CcCCCCccccchhhheeeecccccHHHHHHHHHHHHHHHhHHhhhhhHHHHHHhhhcCCCccccCCCCCccccHHHHHHH
Q 013856 327 EDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQM 406 (435)
Q Consensus 327 E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~l~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~rit~~eai~l 406 (435)
|++++.|| ||||||||||+|++ |+|+|+++|+||+++++.+.+. ++.. |+||||.||++.
T Consensus 219 E~~~t~r~-pEFT~lE~e~af~d-~~dvm~~~E~li~~i~~~v~~~-----------------~~~~-f~r~ty~ea~~~ 278 (585)
T 1c0a_A 219 EDLRADRQ-PEFTQIDVETSFMT-APQVREVMEALVRHLWLEVKGV-----------------DLGD-FPVMTFAEAERR 278 (585)
T ss_dssp CCCBTTBC-SEEEEEEEEEESCC-HHHHHHHHHHHHHHHHHHHHSC-----------------CCCS-CCEEEHHHHHHH
T ss_pred CCCCCCcC-cccceeeeeecCCC-HHHHHHHHHHHHHHHHHHHhCC-----------------Cccc-cceeeHHHHHHH
Confidence 99977666 59999999999997 9999999999999999987532 1123 899999999974
Q ss_pred H
Q 013856 407 L 407 (435)
Q Consensus 407 l 407 (435)
+
T Consensus 279 ~ 279 (585)
T 1c0a_A 279 Y 279 (585)
T ss_dssp H
T ss_pred h
Confidence 3
No 15
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=100.00 E-value=4.6e-61 Score=513.26 Aligned_cols=274 Identities=26% Similarity=0.374 Sum_probs=237.8
Q ss_pred eEeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEEeeCCCCCCHHHHHHHhcCCCCceEEEEEEEecC
Q 013856 93 TEVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVP 172 (435)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~ 172 (435)
+.|++|...+.|++|+|+|||+++|.+ +|++|||+++.||||++.+ ..+++++++++.|+.||+|.|+|+|...
T Consensus 13 ~~~~~l~~~~~g~~V~l~GwV~~~R~~----~Fi~LrD~~g~iQvv~~~~--~~~~~~~~~~~~l~~e~~V~V~G~v~~~ 86 (617)
T 4ah6_A 13 NTCGELRSSHLGQEVTLCGWIQYRRQN----TFLVLRDFDGLVQVIIPQD--ESAASVKKILCEAPVESVVQVSGTVISR 86 (617)
T ss_dssp SCGGGCCGGGTTCEEEEEEEECCCCTT----TEEEEECSSCEEEEECCCS--SSSHHHHHHHHHCCSSCEEEEEEEEEEC
T ss_pred eEHHHhHHHhCCCEEEEEEEeeeecCe----EEEEEEeCCcCEEEEEeCC--cCcHHHHHHHhcCCCCCEEEEEEEEEeC
Confidence 567888888899999999999999963 5999999999999999854 2456788999999999999999999864
Q ss_pred Cc---cCCCCceeEEEEEeEEEEeecCCCCCcccccccchHHHHHhhhhcCCCCCCCCcccccccceeeeechhhhhHHH
Q 013856 173 DV---EIKGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFR 249 (435)
Q Consensus 173 ~~---~~~~~t~~lEI~v~~i~vls~~~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~rl~~R~Ldlr~~~~~~i~~ 249 (435)
+. ..+..+|++||++++|.||++|.+||+++++.. .++.++||+|||||||++..+++|+
T Consensus 87 ~~~~~n~~~~tgeiEl~~~~i~vL~~a~~lP~~~~~~~-----------------~~~ee~Rl~~R~LdLR~~~~~~~lr 149 (617)
T 4ah6_A 87 PAGQENPKMPTGEIEIKVKTAELLNACKKLPFEIKNFV-----------------KKTEALRLQYRYLDLRSFQMQYNLR 149 (617)
T ss_dssp STTCCCTTSTTTTEEEEEEEEEEEECBCCCSSCTTTTC-----------------CSCHHHHHHTHHHHTTSHHHHHHHH
T ss_pred CccccCccCCCCcEEEEEeEEEEeecCCCCCccccccc-----------------ccChhhhccceeeeecchHHHHHHH
Confidence 32 123456899999999999999988999876542 2578999999999999999999999
Q ss_pred HHHHHHHHHHHHhh-cCCeeeecCceeeecCCCCCcceeeecc--CCCceeeccChHHHHhhhccCCCceeEEEecceec
Q 013856 250 IQSQVGNIFRQFLL-SENFVEIHTPKLIAGSSEGGSAVFRLDY--KGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRA 326 (435)
Q Consensus 250 ~rs~i~~~~R~fl~-~~gF~EV~TP~l~~~~~egga~~F~~~~--~~~~~~L~~Spql~lq~li~~g~~rVfeIgp~FR~ 326 (435)
+||.|+++||+||. ++||+||+||+|+++ +.|||.+|.+.+ +|..+||+||||||||+||++|++|||||||||||
T Consensus 150 ~Rs~i~~~iR~f~~~~~gF~EVeTPiL~~s-t~~GA~~F~v~~~~~g~~~~L~qSpql~kq~l~v~g~~rvfqi~~~FR~ 228 (617)
T 4ah6_A 150 LRSQMVMKMREYLCNLHGFVDIETPTLFKR-TPGGAKEFLVPSREPGKFYSLPQSPQQFKQLLMVGGLDRYFQVARCYRD 228 (617)
T ss_dssp HHHHHHHHHHHHHHTTSCCEECCCCSSBCC-CCSSSCCCEEECSSTTCEEECCSSTTHHHHHHHHTSCSEEEEEEEEECC
T ss_pred HHHHHHHHHHHHHHhcCCeEEEeCCeeccC-CCCCCcCceeccccCCcccccccCHHHHHHHHHhcccCcEEEEEhheec
Confidence 99999999999996 799999999999975 456688899865 68999999999999999999999999999999999
Q ss_pred CcCCCCccccchhhheeeecccccHHHHHHHHHHHHHHHhHHhhhhhHHHHHHhhhcCCCccccCCCCCccccHHHHHHH
Q 013856 327 EDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQM 406 (435)
Q Consensus 327 E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~l~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~rit~~eai~l 406 (435)
|++++ +|+||||||||||+|.+ |+|+|+++|+||+++++.+. .++..||+||||.||+.
T Consensus 229 E~~~t-~r~pEFt~lE~e~af~d-~~d~m~~~E~l~~~~~~~~~------------------~~~~~pf~r~ty~eA~~- 287 (617)
T 4ah6_A 229 EGSRP-DRQPEFTQIDIEMSFVD-QTGIQSLIEGLLQYSWPNDK------------------DPVVVPFPTMTFAEVLA- 287 (617)
T ss_dssp CSSCS-SSCSEEEEEEEEEESCC-HHHHHHHHHHHHHHHSCSSS------------------CCCCSSCCEEEHHHHHH-
T ss_pred ccCCC-CcCcceecceeeecCCC-HHHHHHHHHHHHHHHHHHhc------------------CccCCCceEeEHHHHHH-
Confidence 99855 56999999999999997 99999999999999986532 13356899999999995
Q ss_pred HHHcCCC
Q 013856 407 LKDAGVE 413 (435)
Q Consensus 407 l~~~g~~ 413 (435)
..|.+
T Consensus 288 --~ygsD 292 (617)
T 4ah6_A 288 --TYGTD 292 (617)
T ss_dssp --HTSSS
T ss_pred --HHcCC
Confidence 55544
No 16
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=100.00 E-value=2.3e-42 Score=348.51 Aligned_cols=170 Identities=19% Similarity=0.218 Sum_probs=139.7
Q ss_pred eeechhhhhHHHHHHHHHHHHHHHhhcCCeeeecCceeeecCCCC-CcceeeeccCC------CceeeccChHHHHhhhc
Q 013856 238 DIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEG-GSAVFRLDYKG------QSACLAQSPQLHKQMSI 310 (435)
Q Consensus 238 dlr~~~~~~i~~~rs~i~~~~R~fl~~~gF~EV~TP~l~~~~~eg-ga~~F~~~~~~------~~~~L~~Spql~lq~li 310 (435)
+.|++ ++++|++||.|+++||+||.++||+||+||+|++++++| ++.+|.++||+ .++||+||||||||+++
T Consensus 27 ~~~~~-~~~~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~~~a~~~~F~~~~~~~~~~~~~~~yL~~Spql~~k~l~ 105 (345)
T 3a5y_A 27 WQPSA-SIPNLLKRAAIMAEIRRFFADRGVLEVETPCMSQATVTDIHLVPFETRFVGPGHSQGMNLWLMTSPEYHMKRLL 105 (345)
T ss_dssp TSCSS-CHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCCCCTTCCCCEEEECCSTTSCCEEEEECSCSHHHHHHHH
T ss_pred cCCch-HHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEecCCCCCccceEEEEecCcccccCCCEeecCCHHHHHHHHH
Confidence 34555 889999999999999999999999999999999877654 67899999997 78999999999999999
Q ss_pred cCCCceeEEEecceecCcCCCCccccchhhheeeecccccHHHHHHHHHHHHHHHhHHhhhhhHHHHHHhhhcCCCcccc
Q 013856 311 CGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLK 390 (435)
Q Consensus 311 ~~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~l~~~i~~~~~~~~~~~i~~~~~~~~~~~~~ 390 (435)
++|++||||||||||||++ |.|||||||||||||+|.+ |+|+|+++|+||+++++.
T Consensus 106 ~~g~~rvyqIg~~FR~E~~-~~rH~pEFt~lE~e~af~d-~~d~m~~~E~li~~v~~~---------------------- 161 (345)
T 3a5y_A 106 VAGCGPVFQLCRSFRNEEM-GRYHNPEFTMLEWYRPHYD-MYRLMNEVDDLLQQVLDC---------------------- 161 (345)
T ss_dssp HTTCCSEEEEEEEECCCCC-BTTBCSEEEEEEEEEETCC-HHHHHHHHHHHHHHHHCC----------------------
T ss_pred HcCCCcEEEEEcceeCCCC-cccccchhheeeeeeeCCC-HHHHHHHHHHHHHHHHcC----------------------
Confidence 9999999999999999998 9999999999999999997 999999999999999861
Q ss_pred CCCCCccccHHHHHHH-----------------HHHcCCC-CCCC-CCCCcHHHHHHHHHHhc
Q 013856 391 YKPKTLRLTFEEGVQM-----------------LKDAGVE-IDPL-GDLNTESERKLGQLVLE 434 (435)
Q Consensus 391 ~~~p~~rit~~eai~l-----------------l~~~g~~-~~~~-~dl~te~E~~L~~~vke 434 (435)
.||+||||.||++. +++.|+. +.++ +|+++..|+.|+++|.+
T Consensus 162 --~~~~rity~ea~~~~~g~d~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~e~~l~~~ve~ 222 (345)
T 3a5y_A 162 --PAAESLSYQQAFLRYLEIDPLSADKTQLREVAAKLDLSNVADTEEDRDTLLQLLFTFGVEP 222 (345)
T ss_dssp --CCCEEEEHHHHHHHHTCCCTTCCC------------------------HHHHHHHHHHTGG
T ss_pred --CCCcEeeHHHHHHHHhCCCCCCCCHHHHHHHHHHcCCcccCCCcCCHhHHHHHHHHHHHHH
Confidence 26788888888753 3344555 5555 57888889999988754
No 17
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=100.00 E-value=1.6e-37 Score=307.20 Aligned_cols=157 Identities=24% Similarity=0.318 Sum_probs=142.5
Q ss_pred ccceeeeechhhhhHHHHHHHHHHHHHHHhhcCCeeeecCceeeec--------CCCCCcceeeeccCCCceeeccChHH
Q 013856 233 NNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAG--------SSEGGSAVFRLDYKGQSACLAQSPQL 304 (435)
Q Consensus 233 ~~R~Ldlr~~~~~~i~~~rs~i~~~~R~fl~~~gF~EV~TP~l~~~--------~~egga~~F~~~~~~~~~~L~~Spql 304 (435)
+||+||||++ ++++|++|+.|++.+|+||.++||+||+||+|..+ .+|| +++|.++|+|+++||++|||+
T Consensus 1 ~~r~l~lr~~-~~~~~~~rs~i~~~ir~~f~~~GF~EVeTP~l~~~~~~~~~~~~~e~-a~~f~~~~~~~~~~L~~Spe~ 78 (294)
T 1nnh_A 1 MNAVEIISRE-ISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEG-MEPAEVEIYGVKMRLTHSMIL 78 (294)
T ss_dssp -CHHHHHTSC-CHHHHHHHHHHHHHHHHHHHHTTCEEECCCCEESCCCCCCSCTTCCC-CCCCEEEETTEEEEECSCSHH
T ss_pred CchHHhhhcc-hHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEccchhccCCCCCc-ceeEEEEcCCCCEEeccChHH
Confidence 5899999999 99999999999999999999999999999999998 7777 899999999999999999999
Q ss_pred HHhhhccCCCceeEEEecceecCc--CCCCccccchhhheeeecccccHHHHHHHHHHHHHHHhHHhhhhhHHHHHHhhh
Q 013856 305 HKQMSICGDFGRVFETGPVFRAED--SYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAK 382 (435)
Q Consensus 305 ~lq~li~~g~~rVfeIgp~FR~E~--s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~l~~~i~~~~~~~~~~~i~~~~~ 382 (435)
|+|+++++|++|||+||||||+|+ +++.||+|||||||+||+|.+ ++|+|+++|+|++++++.+.+. ++.
T Consensus 79 ~~~~l~~~g~~rvf~ig~~FR~E~pq~~~~RH~~EFtqle~e~~~~~-~~~l~~~~e~l~~~l~~~~~~~-------~~~ 150 (294)
T 1nnh_A 79 HKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERAK-MEDIMRLIERLVYGLFRKAEEW-------TGR 150 (294)
T ss_dssp HHHHHHHTTCCEEEEEEEEECCCCGGGCSSSCCSEEEEEEEEEETCC-HHHHHHHHHHHHHHHHHHHHHH-------HSS
T ss_pred HHHHHhhcCccceEEEEccEeCCCCCCCCCccccceeEEEEEecCCC-HHHHHHHHHHHHHHHHHHHHhh-------hcc
Confidence 999999999999999999999999 877899999999999999997 9999999999999999987642 111
Q ss_pred cCCCcccc-CCCCCccccHHHHHH
Q 013856 383 QYPFEPLK-YKPKTLRLTFEEGVQ 405 (435)
Q Consensus 383 ~~~~~~~~-~~~p~~rit~~eai~ 405 (435)
.++ +. +|+|+||.||+.
T Consensus 151 -----~i~~~~-~~~r~~y~ea~~ 168 (294)
T 1nnh_A 151 -----EFPKTK-RFEVFEYSEVLE 168 (294)
T ss_dssp -----CCCCCS-SCEEEEHHHHHH
T ss_pred -----ccccCC-CceEeEHHHHHH
Confidence 122 23 399999999995
No 18
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=99.89 E-value=4.5e-25 Score=217.59 Aligned_cols=165 Identities=19% Similarity=0.267 Sum_probs=131.1
Q ss_pred CCceeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCCcccccccceeeeechhhhhHHHH-----H
Q 013856 178 GATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRI-----Q 251 (435)
Q Consensus 178 ~~t~~lEI~v~~i~vls~~-~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~rl~~R~Ldlr~~~~~~i~~~-----r 251 (435)
.++|++||++++|.+|++| .+||+++++. ..||++||||+|++..++++++ +
T Consensus 22 ~~~~~~ei~~~~~~vl~~a~~~~P~~~~~~----------------------~~~l~~r~l~~R~~~~~~i~~~g~~~~~ 79 (290)
T 3qtc_A 22 SAPALTKSQTDRLEVLLNPKDEISLNSGKP----------------------FRELESELLSRRKKDLQQIYAEERENYL 79 (290)
T ss_dssp --CCCCHHHHHHHHHHCCTTCC----CCSC----------------------HHHHHHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred CCCceEEEEhhhhhhhccCCCCCCCCcchh----------------------hhhhhhHHHHhccchHHHHhccccccHH
Confidence 4558899999999999999 8999976431 2389999999999999999999 9
Q ss_pred HHHHHHHHHHhhcCCeeeecCceeeecCCC------CCcceee-eccCCCceeec--cChHHHHhhhc----cCCCceeE
Q 013856 252 SQVGNIFRQFLLSENFVEIHTPKLIAGSSE------GGSAVFR-LDYKGQSACLA--QSPQLHKQMSI----CGDFGRVF 318 (435)
Q Consensus 252 s~i~~~~R~fl~~~gF~EV~TP~l~~~~~e------gga~~F~-~~~~~~~~~L~--~Spql~lq~li----~~g~~rVf 318 (435)
+.+.+.+|++|..+||.||.||+|++..+. ++...+. +.+|+..++|| +||+|+.++.. ..+..|+|
T Consensus 80 ~~i~~~ir~~l~~~Gf~EV~Tp~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~LR~slsp~L~~~l~~n~~~~~~p~rlf 159 (290)
T 3qtc_A 80 GKLEREITRFFVDRGFLEIKSPILIPLEYIERMGIDNDTELSKQIFRVDKNFCLRPMLTPNLYNYLRKLDRALPDPIKIF 159 (290)
T ss_dssp HHHHHHHHHHHHHTTCEEECCCSEEETHHHHHTTCCTTSSGGGGCCEETTTEEECSCSHHHHHHHHHHHTTTSCSSEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEECCceeeHHHHHhcCCCcCCchhhhheeeCCCeeEcccChHHHHHHHHHhhccCCCCeEEE
Confidence 999999999999999999999999876421 1211222 44678899999 99999966543 25568999
Q ss_pred EEecceecCcCCCCccccchhhheeeecccc-cHHHHHHHHHHHHHHH
Q 013856 319 ETGPVFRAEDSYTHRHLCEFTGLDVEMEIKK-HYSEVMDIVDCLFVTI 365 (435)
Q Consensus 319 eIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~-~~~d~m~~~e~l~~~i 365 (435)
|||+|||+|+. +.+|++||||+|+++++.+ ++.++..+++.++..+
T Consensus 160 eiG~vFR~E~~-~~~~~~Ef~ql~~~~~g~~~~f~elkg~le~ll~~l 206 (290)
T 3qtc_A 160 EIGPCYRKESD-GKEHLEEFTMLVFWQMGSGCTRENLESIITDFLNHL 206 (290)
T ss_dssp EEEEEECCCSC-SSSCCSEEEEEEEEEESTTCCHHHHHHHHHHHHHHH
T ss_pred EEcCEEecCCC-CCcCcchheEEEEEEEcCChHHHHHHHHHHHHHHHc
Confidence 99999999974 7899999999999998853 3677777777777654
No 19
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A*
Probab=99.07 E-value=3e-10 Score=111.96 Aligned_cols=113 Identities=11% Similarity=0.127 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHhhcCCeeeecCceeeecC-----C-CCCc-------ceeeeccCCCceeeccChHHHHhhhccCC----
Q 013856 251 QSQVGNIFRQFLLSENFVEIHTPKLIAGS-----S-EGGS-------AVFRLDYKGQSACLAQSPQLHKQMSICGD---- 313 (435)
Q Consensus 251 rs~i~~~~R~fl~~~gF~EV~TP~l~~~~-----~-egga-------~~F~~~~~~~~~~L~~Spql~lq~li~~g---- 313 (435)
.+.+.+.+|++|..+||.||++|.+.+.. . -+.. ++|.+ ....+||+|.-..+..+++.+
T Consensus 55 ~~~~~~~iR~~l~~~Gf~Ev~~s~l~~~~~nf~~l~~~~~~par~~~d~~~l---~e~~vLRtsl~p~ll~~l~~N~~~~ 131 (294)
T 2rhq_A 55 LTRTVEEIEDLFLGLGYEIVDGYEVEQDYYNFEALNLPKSHPARDMQDSFYI---TDEILMRTHTSPVQARTMEKRNGQG 131 (294)
T ss_dssp HHHHHHHHHHHHHTTTCEECCCCSEEEHHHHTGGGTCCTTCGGGCTTTSCBS---SSSEEECSSSHHHHHHHHHHTTTCS
T ss_pred HHHHHHHHHHHHHHCCCEEEcCcceeeehhhHHhhCCCCCccccccCCcEEE---cCcceeeccCHHHHHHHHHhcCCCC
Confidence 45678999999999999999999886531 0 0000 02322 355688888777777777766
Q ss_pred CceeEEEecceecCcCCCCccccchhhheeeeccc-ccHHHHHHHHHHHHHHHhH
Q 013856 314 FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDCLFVTIFD 367 (435)
Q Consensus 314 ~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~-~~~~d~m~~~e~l~~~i~~ 367 (435)
--|+||||+|||+++. +.+|+|||+||++++++. -++.+++..++.++..++.
T Consensus 132 ~~riFEiG~Vfr~d~~-d~~h~~Ef~~Le~~~~g~~~df~dlKg~le~ll~~l~g 185 (294)
T 2rhq_A 132 PVKIICPGKVYRRDSD-DATHSHQFTQIEGLVVDKNIKMSDLKGTLELVAKKLFG 185 (294)
T ss_dssp CEEEEEEEEEECCCCC-BTTBCSEEEEEEEEEEESSCCHHHHHHHHHHHHHHHHC
T ss_pred CccEEEEcCEEecCCC-CCCCCChhhEEEEEEECCCCCHHHHHHHHHHHHHHHhC
Confidence 6799999999998763 567999999999999983 1389999999999988753
No 20
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A*
Probab=98.94 E-value=1.9e-09 Score=108.51 Aligned_cols=114 Identities=15% Similarity=0.106 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHhhcCCeeeecCceeeecC-------CCC--C----cceeeecc-CC-----------Cceeec--cChH
Q 013856 251 QSQVGNIFRQFLLSENFVEIHTPKLIAGS-------SEG--G----SAVFRLDY-KG-----------QSACLA--QSPQ 303 (435)
Q Consensus 251 rs~i~~~~R~fl~~~gF~EV~TP~l~~~~-------~eg--g----a~~F~~~~-~~-----------~~~~L~--~Spq 303 (435)
.+.+.+.||++|..+||.||.+|.+.+.. ... . .+.|.+.. .. ....|| .||.
T Consensus 103 ~~~~~~~Ir~~f~~~Gf~Ev~~p~v~~~~~nfd~L~~p~~hpar~~~dt~~l~nP~s~~~~~~~~~~~~~~vLRt~tsp~ 182 (350)
T 1b7y_A 103 ITLMERELVEIFRALGYQAVEGPEVESEFFNFDALNIPEHHPARDMWDTFWLTGEGFRLEGPLGEEVEGRLLLRTHTSPM 182 (350)
T ss_dssp HHHHHHHHHHHHHTTTCEECCCCSEEEHHHHTTTTTCCSSSTTTTSSCCCBEECSSCCCBCTTSCBCCSCEEECSSSTHH
T ss_pred HHHHHHHHHHHHHHCCCEEEECcchhcchhHHHhhCCCCCCccccccccEEEcCccccccccccccccccceeeccchHH
Confidence 35568899999999999999999996521 110 0 22454431 11 333455 5666
Q ss_pred HHHhhhccCC-C-ceeEEEecceecCcCCCCccccchhhheeeeccc-ccHHHHHHHHHHHHHHHhH
Q 013856 304 LHKQMSICGD-F-GRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDCLFVTIFD 367 (435)
Q Consensus 304 l~lq~li~~g-~-~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~-~~~~d~m~~~e~l~~~i~~ 367 (435)
+. .++..+ . -|+||||+|||++.. +.+|+|||+|||+++.+. -++.|++..++.++..++.
T Consensus 183 ll--r~l~~~~~piriFEiGrVFR~d~~-d~tH~pEF~qlegl~~g~~v~f~dLKg~le~ll~~lfG 246 (350)
T 1b7y_A 183 QV--RYMVAHTPPFRIVVPGRVFRFEQT-DATHEAVFHQLEGLVVGEGIAMAHLKGAIYELAQALFG 246 (350)
T ss_dssp HH--HHHHHCCSSEEEEEEEEEECCCCC-CSSCCSEEEEEEEEEEETTCCHHHHHHHHHHHHHHHSC
T ss_pred HH--HHHHhcCCCeeEEEeeeEEECCCC-CCCCCChhHEEEEEEECCCCCHHHHHHHHHHHHHhhcC
Confidence 65 344433 2 489999999999874 678999999999999886 1389999999999998865
No 21
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=98.77 E-value=5.6e-09 Score=102.58 Aligned_cols=112 Identities=23% Similarity=0.370 Sum_probs=79.1
Q ss_pred HHHHHHHHHHhhcCCeeeecCceeeecCC---CC-Cc--ceeee-ccCCCceeecc--ChHHHH--hhhccCCCc---ee
Q 013856 252 SQVGNIFRQFLLSENFVEIHTPKLIAGSS---EG-GS--AVFRL-DYKGQSACLAQ--SPQLHK--QMSICGDFG---RV 317 (435)
Q Consensus 252 s~i~~~~R~fl~~~gF~EV~TP~l~~~~~---eg-ga--~~F~~-~~~~~~~~L~~--Spql~l--q~li~~g~~---rV 317 (435)
..+.+.+|++|...||.||.||.|..... .| .. +.|.+ ++.+..++||. +|.+.. ... ...-+ |+
T Consensus 74 ~~l~~~ir~~~~~~Gf~EV~tP~Le~~~l~~~~g~~~~~~m~~~~npl~e~~~LRp~l~p~l~~~~r~~-~~~~~~Plrl 152 (288)
T 3dsq_A 74 LELEEKLAKALHQQGFVQVVTPTIITKSALAKMTIGEDHPLFSQVFWLDGKKCLRPMLAPNLYTLWREL-ERLWDKPIRI 152 (288)
T ss_dssp HHHHHHHHHHHHTTTCEECCCCSEEEHHHHHTTSSCC--CCTTTSCEEETTEEECSCSHHHHHHHHHHH-TTTSCSCEEE
T ss_pred HHHHHHHHHHHHHCCCEEEECCeeecHHHHhhcCCCcccccEEeecccccchhhhhcChHHHHHHHHHH-HhCCCCCEEE
Confidence 67899999999999999999999986431 11 11 12322 23456789984 566552 211 12233 99
Q ss_pred EEEecceecCcCCCCccccchhhheeeecccc---cHHHHHHHHHHHHHHH
Q 013856 318 FETGPVFRAEDSYTHRHLCEFTGLDVEMEIKK---HYSEVMDIVDCLFVTI 365 (435)
Q Consensus 318 feIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~---~~~d~m~~~e~l~~~i 365 (435)
|+||+|||+|.. +..|.+||+|+|+++.... ++.++..+++.++..+
T Consensus 153 feiG~vFR~E~~-~~~r~~EF~qle~~i~g~~~~~~f~elkg~le~ll~~L 202 (288)
T 3dsq_A 153 FEIGTCYRKESQ-GAQHLNEFTMLNLTELGTPLEERHQRLEDMARWVLEAA 202 (288)
T ss_dssp EEEEEEECSCCS-SSCCCSEEEEEEEEEETCCGGGHHHHHHHHHHHHHHHH
T ss_pred EEEeeEEecCCC-CCCcCccEEEEEEEEEcCCchhhHHHHHHHHHHHHHHc
Confidence 999999999986 6789999999999886641 2667777777777665
No 22
>12as_A Asparagine synthetase; ligase, nitrogen fixation; HET: AMP; 2.20A {Escherichia coli K12} SCOP: d.104.1.1 PDB: 11as_A*
Probab=98.72 E-value=8.4e-08 Score=94.05 Aligned_cols=154 Identities=11% Similarity=0.168 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHHHHhh-----cCCeeeecCceeeecCCC-----CC-cceeeecc--C-CCceeeccChHHHHhhhccC-
Q 013856 248 FRIQSQVGNIFRQFLL-----SENFVEIHTPKLIAGSSE-----GG-SAVFRLDY--K-GQSACLAQSPQLHKQMSICG- 312 (435)
Q Consensus 248 ~~~rs~i~~~~R~fl~-----~~gF~EV~TP~l~~~~~e-----gg-a~~F~~~~--~-~~~~~L~~Spql~lq~li~~- 312 (435)
++-....+.++++||. +.||++|..|++....++ .| ..|..++. + |..+-+.+|--.||++++..
T Consensus 5 ~~~tq~aI~~iK~~f~~~l~~~L~L~rVsaPlfv~~~~GlnD~LnG~ErpV~f~i~~~~~~~~eivhSLaKWKR~aL~~y 84 (330)
T 12as_A 5 YIAKQRQISFVKSHFSRQLEERLGLIEVQAPILSRVGDGTQDNLSGAEKAVQVKVKALPDAQFEVVHSLAKWKRQTLGQH 84 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCEEECCCCSEEETTSSCSCCTTTTCCCCEECCSSSTTCCEEECSCCTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcEEecCCEEecCCCCCCCCCCCceecceEecccCCCceEEEeeeHHHHHHHHHHhC
Confidence 4556778899999999 899999999999874321 13 23444443 3 78899999999999999864
Q ss_pred CC---ceeEEEecceecCcC-CCCccccchhhheeeecccccHHHHHHHHHHHHHHHhHHhhhhhHHHHHHhhhcCCCcc
Q 013856 313 DF---GRVFETGPVFRAEDS-YTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEP 388 (435)
Q Consensus 313 g~---~rVfeIgp~FR~E~s-~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~l~~~i~~~~~~~~~~~i~~~~~~~~~~~ 388 (435)
|| +.+|+-.++.|.+.. -+++|.-+|+|.|||..+.. -+..|++++++++.|+..+...- ..+...|...+
T Consensus 85 ~f~~geGlytdMnaIR~dee~ld~~HS~yvDQwDWE~vi~~-~~R~~~~Lk~tV~~Iy~~ik~tE----~~~~~~y~l~p 159 (330)
T 12as_A 85 DFSAGEGLYTHMKALRPDEDRLSPLHSVYVDQWDWERVMGD-GERQFSTLKSTVEAIWAGIKATE----AAVSEEFGLAP 159 (330)
T ss_dssp TCCTTCEEEEEEEEECTTCSCCCSSCCSEEEEEEEEEECCT-TCCSHHHHHHHHHHHHHHHHHHH----HHHHHHSCCCC
T ss_pred CCCCCCeeEecCcccccCcccCCCceeEEEeeeeeEEeccc-cchHHHHHHHHHHHHHHHHHHHH----HHHHHHhccCc
Confidence 57 999999999997654 68999999999999999986 57889999999888887775321 12444452222
Q ss_pred ccCCCCCccccHHHHHHHH
Q 013856 389 LKYKPKTLRLTFEEGVQML 407 (435)
Q Consensus 389 ~~~~~p~~rit~~eai~ll 407 (435)
. +..++..||.+|..+++
T Consensus 160 ~-Lp~~i~fitsqeL~~~Y 177 (330)
T 12as_A 160 F-LPDQIHFVHSQELLSRY 177 (330)
T ss_dssp C-SCSSCEEEEHHHHHHHS
T ss_pred C-CCCceEEEeHHHHHHHc
Confidence 1 45678889988888743
No 23
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=98.22 E-value=1.9e-06 Score=87.89 Aligned_cols=113 Identities=19% Similarity=0.200 Sum_probs=76.9
Q ss_pred hHHHHHHHHHHHHHHHhhcCCeeeecCceeeecCC---CC-----CcceeeeccCCCceeeccChHH-----HHhhhccC
Q 013856 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EG-----GSAVFRLDYKGQSACLAQSPQL-----HKQMSICG 312 (435)
Q Consensus 246 ~i~~~rs~i~~~~R~fl~~~gF~EV~TP~l~~~~~---eg-----ga~~F~~~~~~~~~~L~~Spql-----~lq~li~~ 312 (435)
.-.+++..|.+.+|+.|...||.||.||+|..... -| +.+.|.++--|..++|+-...- |.+.+...
T Consensus 28 ~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sG~~~~~~~em~~~d~~~~~~~LrP~~~~~~~~~~~~~~~s~ 107 (401)
T 1evl_A 28 DGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSENREYCIKPMNCPGHVQIFNQGLKSY 107 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTHHHHSGGGCCEEEETTEEEEECSCSHHHHHHHHTSSCCBG
T ss_pred hHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHHhcCcHhhhchhhEeEecCCceEEEcCCCCHHHHHHHHhhhhhh
Confidence 45678899999999999999999999999987531 01 2245665556788999966543 33322111
Q ss_pred -CC-ceeEEEecceecCcCCCCc----cccchhhheeeecccccHHHHHHHHHHH
Q 013856 313 -DF-GRVFETGPVFRAEDSYTHR----HLCEFTGLDVEMEIKKHYSEVMDIVDCL 361 (435)
Q Consensus 313 -g~-~rVfeIgp~FR~E~s~t~r----Hl~EFt~lE~e~a~~~~~~d~m~~~e~l 361 (435)
.+ -|+|+||+|||+|.+ +.+ -..||+|+|+|. |.+ ..++....+++
T Consensus 108 ~~lP~r~~~~g~~fR~E~~-~p~~Gl~R~reF~q~d~~~-f~~-~~~~~~e~~e~ 159 (401)
T 1evl_A 108 RDLPLRMAEFGSCHRNEPS-GSLHGLMRVRGFTQDDAHI-FCT-EEQIRDEVNGC 159 (401)
T ss_dssp GGCSEEEEEEEEEECCCCG-GGCBTTTBCSEEEEEEEEE-EEC-GGGHHHHHHHH
T ss_pred hhCChhhccccceecCCCC-cccccccccCcEEecceEE-eCC-HHHHHHHHHHH
Confidence 22 499999999999985 222 347999999994 554 34443333333
No 24
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=98.20 E-value=1.4e-06 Score=89.08 Aligned_cols=118 Identities=18% Similarity=0.244 Sum_probs=75.2
Q ss_pred hHHHHHHHHHHHHHHHhhcCCeeeecCceeeecC----CCCC------cceeee-ccCCCceeeccCh--H---HHHhhh
Q 013856 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS----SEGG------SAVFRL-DYKGQSACLAQSP--Q---LHKQMS 309 (435)
Q Consensus 246 ~i~~~rs~i~~~~R~fl~~~gF~EV~TP~l~~~~----~egg------a~~F~~-~~~~~~~~L~~Sp--q---l~lq~l 309 (435)
.-.+++..|.+.+|+.|...||.||.||+|.... +-|| .+.|.+ +--|+.++|+--. . +|....
T Consensus 14 ~~~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~g~~~~~~~~~m~~~~D~~g~~~~Lrp~~t~~~~r~~~~~~ 93 (420)
T 1qe0_A 14 EDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDKGDRSITLRPEGTAAVVRSYIEHK 93 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHCC-----------CCEEECHHHHCCEEECSCSHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEccCcccchHHHhhhccCCccchhhhheEEEEcCCCCEEEeCCCChHHHHHHHHhcc
Confidence 4567889999999999999999999999998743 1122 135655 3346778887332 2 222222
Q ss_pred cc--CC-CceeEEEecceecCcCCCCccccchhhheeeecccccH---HHHHHHHHHHHHH
Q 013856 310 IC--GD-FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHY---SEVMDIVDCLFVT 364 (435)
Q Consensus 310 i~--~g-~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~---~d~m~~~e~l~~~ 364 (435)
.. .. --|+|+||+|||+|.+ ..-+.-||+|+|+|.-..++. .+++.++.+++..
T Consensus 94 ~~~~~~lP~r~~~~g~vfR~E~~-~~gR~reF~q~~~e~~~~~~~~~d~e~i~~~~~~l~~ 153 (420)
T 1qe0_A 94 MQGNPNQPIKLYYNGPMFRYERK-QKGRYRQFNQFGVEAIGAENPSVDAEVLAMVMHIYQS 153 (420)
T ss_dssp GGGCSSCSEEEEEEEEEECC--------CCEEEEEEEEEESCCCHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCeEEEEecCEeecCCC-cCCCcccEEEeeEEEECCCCchhHHHHHHHHHHHHHH
Confidence 22 12 2599999999999975 334578999999998766533 3566666555554
No 25
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=98.20 E-value=3.7e-06 Score=86.78 Aligned_cols=115 Identities=12% Similarity=0.154 Sum_probs=76.5
Q ss_pred hHHHHHHHHHHHHHHHhhcCCeeeecCceeeecC----C----CCCcceeeeccCCCceeeccChH-----HHHhhhccC
Q 013856 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS----S----EGGSAVFRLDYKGQSACLAQSPQ-----LHKQMSICG 312 (435)
Q Consensus 246 ~i~~~rs~i~~~~R~fl~~~gF~EV~TP~l~~~~----~----egga~~F~~~~~~~~~~L~~Spq-----l~lq~li~~ 312 (435)
.-.+++..|.+.+++++...||.||.||.|.... + ..+-+.|.+. +..+||+-..+ +|....+..
T Consensus 170 ~ga~l~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~~--~~~l~LrPt~e~~i~~~~~~~i~s~ 247 (425)
T 2dq3_A 170 WGARLERALINFMLDLHTKKGYKEICPPHLVKPEILIGTGQLPKFEEDLYKCE--RDNLYLIPTAEVPLTNLYREEILKE 247 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHHHSCTTTTGGGSCBCT--TTCCEECSSTHHHHHGGGTTEEEET
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHhcCCCCcChhhheEec--CCeEEEcCCCcHHHHHHHHhhcccc
Confidence 5567889999999999999999999999998744 1 1122355543 67889985443 344433332
Q ss_pred -CC-ceeEEEecceecCcCCCC------ccccchhhheeeecccccHHHHHHHHHHHHHH
Q 013856 313 -DF-GRVFETGPVFRAEDSYTH------RHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVT 364 (435)
Q Consensus 313 -g~-~rVfeIgp~FR~E~s~t~------rHl~EFt~lE~e~a~~~~~~d~m~~~e~l~~~ 364 (435)
.+ -|+|++|+|||+|.+... --..||+|+|++.- .. -++..+..++++..
T Consensus 248 ~~LPlrl~~~g~~FR~E~~~~Gr~~~Gl~R~reF~q~E~~~f-~~-pe~s~~~~~e~i~~ 305 (425)
T 2dq3_A 248 ENLPIYLTAYTPCYRREAGAYGKDIRGIIRQHQFDKVELVKI-VH-PDTSYDELEKLVKD 305 (425)
T ss_dssp TTCCEEEEEEEEEECCCCSCCSSSCSSSSSCSEEEEEEEEEE-EC-GGGHHHHHHHHHHH
T ss_pred ccCCeEEEEecCEecCCCCcccccccCcccccceEEeeEEEE-CC-HHHHHHHHHHHHHH
Confidence 22 499999999999985311 13459999999763 32 23444444444443
No 26
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=98.17 E-value=2.2e-06 Score=85.46 Aligned_cols=112 Identities=12% Similarity=0.172 Sum_probs=76.5
Q ss_pred HHHHHHHHHHhhcCCeeeecCceeeecC--------CCCC-cc-eeeeccCCCceeec--cChHHHHhhhccCCCc--ee
Q 013856 252 SQVGNIFRQFLLSENFVEIHTPKLIAGS--------SEGG-SA-VFRLDYKGQSACLA--QSPQLHKQMSICGDFG--RV 317 (435)
Q Consensus 252 s~i~~~~R~fl~~~gF~EV~TP~l~~~~--------~egg-a~-~F~~~~~~~~~~L~--~Spql~lq~li~~g~~--rV 317 (435)
+.+.+.||++|...||.|+.+|.+.+.. .+.+ +. .-.+-|.+....|| .||.+- + .+..+-. |+
T Consensus 110 ~~~~~~Ir~if~~~Gf~ev~~~~ve~~~~nFd~Ln~p~dhpaR~~~dt~~i~e~~vLRThtsp~~l-r-~l~~~~~piri 187 (327)
T 3pco_A 110 TRTIDRIESFFGELGFTVATGPEIEDDYHNFDALNIPGHHPARADHDTFWFDTTRLLRTQTSGVQI-R-TMKAQQPPIRI 187 (327)
T ss_dssp HHHHHHHHHHHHTTTCBCCCCCSEECTCCCCCTTTCCSSSHHHHHTTCCBSSSSCEECSCTHHHHH-H-HHTTCCSSCCB
T ss_pred HHHHHHHHHHHHHCCCeEEECCCccCCHHHHHhhCCCCCChhhcccccEEeCCCceecccCCHHHH-H-HHHhCCCCeeE
Confidence 3457889999999999999999885421 0111 11 00012334455666 556552 2 3344433 99
Q ss_pred EEEecceecCcCCCCccccchhhheeeeccc-ccHHHHHHHHHHHHHHHhH
Q 013856 318 FETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDCLFVTIFD 367 (435)
Q Consensus 318 feIgp~FR~E~s~t~rHl~EFt~lE~e~a~~-~~~~d~m~~~e~l~~~i~~ 367 (435)
|++|+|||++ .+.+|+|+|.|+|..+... -++.++..+++.++..+|.
T Consensus 188 feiGrVyR~d--~d~th~p~fhqlegl~v~~~v~f~dLKg~Le~~l~~lfg 236 (327)
T 3pco_A 188 IAPGRVYRND--YDQTHTPMFHQMEGLIVDTNISFTNLKGTLHDFLRNFFE 236 (327)
T ss_dssp CCEECCBCSC--CBTTBCSBCCEEEEEEEETTCCHHHHHHHHHHHHHHHHC
T ss_pred EeeccEEecC--CCcccCCcccEEEEEEECCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999997 3788999999999866532 1388999999999998875
No 27
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=98.14 E-value=4.7e-06 Score=86.66 Aligned_cols=104 Identities=15% Similarity=0.109 Sum_probs=73.4
Q ss_pred hHHHHHHHHHHHHHHHhhcCCeeeecCceeeecC----CC----CCcceeee-ccCCCceeeccC-----hHHHHhhhcc
Q 013856 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS----SE----GGSAVFRL-DYKGQSACLAQS-----PQLHKQMSIC 311 (435)
Q Consensus 246 ~i~~~rs~i~~~~R~fl~~~gF~EV~TP~l~~~~----~e----gga~~F~~-~~~~~~~~L~~S-----pql~lq~li~ 311 (435)
.-.+++..|.+.+|+.|...||.||.||+|.... ++ .+.+.|.+ +--|+.++|+.. +.++...+..
T Consensus 65 ~g~~~~~~i~~~ir~~~~~~G~~ei~tP~l~~~el~~~sg~~d~~~~em~~~~d~~~~~~~LrPt~ee~t~~i~r~~~~s 144 (458)
T 2i4l_A 65 LGHRVLKKIEQIVREEQNRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRIADRHKRELLYGPTNEEMITEIFRAYIKS 144 (458)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTHHHHSCTTSEEEECTTCCEEEECSCCHHHHHHHHHHHCCB
T ss_pred CHHHHHHHHHHHHHHHHHHcCCEEEEcCccCcHHHHHhcCCccccccceEEEEeCCCCeEEECCCChHHHHHHHHHHHhh
Confidence 4678899999999999999999999999998753 11 12335665 345788899863 2444443221
Q ss_pred C-CC-ceeEEEecceecCcCCCC--ccccchhhheeeecccc
Q 013856 312 G-DF-GRVFETGPVFRAEDSYTH--RHLCEFTGLDVEMEIKK 349 (435)
Q Consensus 312 ~-g~-~rVfeIgp~FR~E~s~t~--rHl~EFt~lE~e~a~~~ 349 (435)
. .+ -|+|+||+|||+|-+... --..||+|+|+|.-..+
T Consensus 145 ~~~lP~rl~~ig~~fR~E~~p~~Gl~R~REF~q~d~~~f~~~ 186 (458)
T 2i4l_A 145 YKSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDVD 186 (458)
T ss_dssp GGGCSEEEEEEEEEECCCSSCBTGGGBCSEEEEEEEEEEESS
T ss_pred ccccCeeeEEecCEeeCCCCCCCCcccccceEEeEEEEEECC
Confidence 1 12 499999999999942111 13579999999987654
No 28
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=98.12 E-value=5.9e-06 Score=82.89 Aligned_cols=117 Identities=17% Similarity=0.200 Sum_probs=73.4
Q ss_pred hHHHHHHHHHHHHHHHhhcCCeeeecCceeeecCC------C----CCcceeee-ccCCCceeecc--ChHHHHhhhcc-
Q 013856 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS------E----GGSAVFRL-DYKGQSACLAQ--SPQLHKQMSIC- 311 (435)
Q Consensus 246 ~i~~~rs~i~~~~R~fl~~~gF~EV~TP~l~~~~~------e----gga~~F~~-~~~~~~~~L~~--Spql~lq~li~- 311 (435)
.-.+++..|.+.+|+.|...||.||.||++..... + .+.+.|++ +--|+.+.|+- .|.+..-.+-.
T Consensus 34 ~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~le~~el~~~s~~g~~~~~~~~my~~~D~~g~~l~LRpd~T~~~aR~~~~~~ 113 (344)
T 1z7m_A 34 NQVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQFIKHEGQSITLRYDFTLPLVRLYSQIK 113 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHCSSSCCCTTSCCEEECTTCCEEEECCCSHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEecCcccCcHHHHhhccCCccccccccEEEEECCCCCEEecCCCCcHHHHHHHHhcC
Confidence 45678889999999999999999999999976421 1 12345665 44567777773 22322211111
Q ss_pred -CCCceeEEEecceecCcCCCCccccchhhheeeecccccH---HHHHHHHHHHHH
Q 013856 312 -GDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHY---SEVMDIVDCLFV 363 (435)
Q Consensus 312 -~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~---~d~m~~~e~l~~ 363 (435)
..--|.|+||+|||+|.+ ..-+.-||+|+++|.-..++. .+++.++.+++.
T Consensus 114 ~~~P~rl~y~g~vfR~e~p-~~gR~REF~Q~g~ei~g~~~~~aDaEvi~l~~~~l~ 168 (344)
T 1z7m_A 114 DSTSARYSYFGKIFRKEKR-HKGRSTENYQIGIELFGESADKSELEILSLALQVIE 168 (344)
T ss_dssp SCCCEEEEEEEECCCCCC--------CCEEEEEEEESSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECcEEccCCC-CCCCcceeEEEEEEEEcCCCcHHHHHHHHHHHHHHH
Confidence 123599999999999976 344778999999998765432 244444444443
No 29
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=98.07 E-value=1.4e-05 Score=82.20 Aligned_cols=104 Identities=14% Similarity=0.118 Sum_probs=73.2
Q ss_pred hHHHHHHHHHHHHHHHhhcCCeeeecCceeeecC---C-CC---Ccceeee-ccCCCceeeccC--hHHHHhhhccCC--
Q 013856 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS---S-EG---GSAVFRL-DYKGQSACLAQS--PQLHKQMSICGD-- 313 (435)
Q Consensus 246 ~i~~~rs~i~~~~R~fl~~~gF~EV~TP~l~~~~---~-eg---ga~~F~~-~~~~~~~~L~~S--pql~lq~li~~g-- 313 (435)
.-.+++..|.+.+|+.|...||.||.||++.... . -| +.+.|.+ +--|+.+.|+-= |.+..-.+-...
T Consensus 18 ~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~~~em~~~~D~~g~~l~LrPd~t~~~aR~~~~~~~~~ 97 (434)
T 1wu7_A 18 EDMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGEELLQQTYSFVDKGGREVTLIPEATPSTVRMVTSRKDLQ 97 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETHHHHTTSCTTGGGGSCEEECTTSCEEEECSCSHHHHHHHHTTCTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHhhhccCCccccceEEEECCCCCEEEeCCCChHHHHHHHHhcCCCC
Confidence 4567889999999999999999999999998743 1 12 2346776 445677888732 233222111111
Q ss_pred C-ceeEEEecceecCcCCCCccccchhhheeeeccccc
Q 013856 314 F-GRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKH 350 (435)
Q Consensus 314 ~-~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~ 350 (435)
+ -|.|+||++||.|.+. .-+.-||+|+++|.-..++
T Consensus 98 lP~rl~~~g~vfR~erp~-~gR~REF~Q~d~ei~g~~~ 134 (434)
T 1wu7_A 98 RPLRWYSFPKVWRYEEPQ-AGRYREHYQFNADIFGSDS 134 (434)
T ss_dssp SSEEEEECCEEECCCCSC-SSCCSEEEEEEEEEESCCS
T ss_pred CCeEEEEEcCeecCCCCC-CCCccceEEeeEEEEcCCC
Confidence 2 4999999999999764 3357899999999876553
No 30
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=98.05 E-value=7.1e-06 Score=88.84 Aligned_cols=114 Identities=15% Similarity=0.112 Sum_probs=75.6
Q ss_pred hHHHHHHHHHHHHHHHhhcCCeeeecCceeeecCC---CCC-----cceeee-ccCC-CceeeccChH-----HHHhhhc
Q 013856 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EGG-----SAVFRL-DYKG-QSACLAQSPQ-----LHKQMSI 310 (435)
Q Consensus 246 ~i~~~rs~i~~~~R~fl~~~gF~EV~TP~l~~~~~---egg-----a~~F~~-~~~~-~~~~L~~Spq-----l~lq~li 310 (435)
.-.+++..|.+.+|+.|...||.||.||+|..... -|+ -+.|.+ +--| +.++|+--.. +|.+...
T Consensus 269 ~g~~~~~~l~~~ir~~~~~~Gy~eV~tP~l~~~~l~~~sG~~d~~~~~mf~~~d~~~~~~~~LrP~~~~~~~~~~~~~~~ 348 (645)
T 1nyr_A 269 NGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMQLDETESMVLRPMNCPHHMMIYANKPH 348 (645)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTEEECBCCSEEETHHHHHHTHHHHCTTSSCCCEEETTTEEEEECSSSHHHHHHHHHTSCC
T ss_pred CHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHhhCCCccccccCcceeEecCCCeEEEeCCCCCHHHHHHHHhhhh
Confidence 45788999999999999999999999999987431 121 234543 3346 7788885432 3333221
Q ss_pred cC-CC-ceeEEEecceecCcCCCCcc----ccchhhheeeecccccHHHHHHHHHHHH
Q 013856 311 CG-DF-GRVFETGPVFRAEDSYTHRH----LCEFTGLDVEMEIKKHYSEVMDIVDCLF 362 (435)
Q Consensus 311 ~~-g~-~rVfeIgp~FR~E~s~t~rH----l~EFt~lE~e~a~~~~~~d~m~~~e~l~ 362 (435)
.. .+ -|+|+||+|||+|.+. .+| .-||||+|+|. |.+ .+.+.+...+++
T Consensus 349 syr~LPlrl~~~g~~fR~E~~~-~~~GL~R~ReF~Q~d~~~-f~~-~~~~~d~~~e~i 403 (645)
T 1nyr_A 349 SYRELPIRIAELGTMHRYEASG-AVSGLQRVRGMTLNDSHI-FVR-PDQIKEEFKRVV 403 (645)
T ss_dssp BGGGCCEEEEEEEEEECCCCTT-TCBTTTBCSEEEEEEEEE-EEC-GGGHHHHHHHHH
T ss_pred hccCCCeEEEEeccEEecCCCc-cccCcceeeeEEEccEEE-EcC-HHHHHHHHHHHH
Confidence 11 22 3999999999999973 333 47999999998 543 344444333333
No 31
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=98.01 E-value=2e-05 Score=82.45 Aligned_cols=115 Identities=12% Similarity=0.066 Sum_probs=79.7
Q ss_pred hHHHHHHHHHHHHHHHhhcCCeeeecCceeeecCC---CCC------cceeeeccC-----CCceeeccChH-----HHH
Q 013856 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EGG------SAVFRLDYK-----GQSACLAQSPQ-----LHK 306 (435)
Q Consensus 246 ~i~~~rs~i~~~~R~fl~~~gF~EV~TP~l~~~~~---egg------a~~F~~~~~-----~~~~~L~~Spq-----l~l 306 (435)
.-.+++..|.+.+|+.|...||.||.||+|.+... ++| .+.|.+..- +.+++|+--.. +|.
T Consensus 42 ~g~~l~~~I~~~~r~~~~~~G~~ei~tP~l~~~el~~~~sgh~d~f~~emy~~~d~g~~~l~~~l~LRP~~~~~i~~~~~ 121 (477)
T 1hc7_A 42 YGYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGGEELEEPLAVRPTSETVIGYMWS 121 (477)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEESTTC---------CCTTCEEEEEESSSEEEEEEEECSCSHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHhhcCCcccccccceEEEECCCCccCCCeEEEcCCCcHHHHHHHH
Confidence 44678889999999999999999999999987652 122 235665432 57889986554 566
Q ss_pred hhhccC-CC-ceeEEEecceecCcC-CCCccccchhhheeeecccccHHHHHHHHHHH
Q 013856 307 QMSICG-DF-GRVFETGPVFRAEDS-YTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCL 361 (435)
Q Consensus 307 q~li~~-g~-~rVfeIgp~FR~E~s-~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~l 361 (435)
+.+... .+ -|+|+||+|||+|.+ ...--.-||+|+|.+..+.+ ..+....+..+
T Consensus 122 ~~~~s~r~LP~rl~qig~vfR~E~~~rGl~R~REF~q~d~~~~~~~-~~~ad~E~~~~ 178 (477)
T 1hc7_A 122 KWIRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEGHTAHAT-REEAEEEVRRM 178 (477)
T ss_dssp HHCCBGGGCCEEEEEEEEEECCCSSCBTTTBCSEEEEEEEEEEESS-HHHHHHHHHHH
T ss_pred hhhhccccCCeeeEeecCEEeCCCCCCCcceeEEEEEccEEEEeCC-HHHHHHHHHHH
Confidence 543321 23 399999999999964 22113469999999998875 55554444444
No 32
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=97.99 E-value=1.5e-05 Score=81.47 Aligned_cols=117 Identities=20% Similarity=0.281 Sum_probs=77.4
Q ss_pred hHHHHHHHHHHHHHHHhhcCCeeeecCceeeecCC--CC-Cc-------ceeee-ccCCCceeecc--ChHHHHhhh---
Q 013856 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS--EG-GS-------AVFRL-DYKGQSACLAQ--SPQLHKQMS--- 309 (435)
Q Consensus 246 ~i~~~rs~i~~~~R~fl~~~gF~EV~TP~l~~~~~--eg-ga-------~~F~~-~~~~~~~~L~~--Spql~lq~l--- 309 (435)
.-.+++..|.+.+|+-|...||.||.||++..... .+ |. +.|.+ +--|+.+.|+- .|.+..-.+
T Consensus 15 ~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~g~~l~Lrpd~t~~~ar~~~~~~ 94 (421)
T 1h4v_B 15 KELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTFQDRGGRSLTLRPEGTAAMVRAYLEHG 94 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEecccccccHHHhhhccCCcccccccceEEEECCCCCEEeeCCcchHHHHHHHHhcc
Confidence 34578889999999999999999999999976431 11 22 46765 44567777773 333332211
Q ss_pred cc-CC-CceeEEEecceecCcCCCCccccchhhheeeecccccH---HHHHHHHHHHHH
Q 013856 310 IC-GD-FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHY---SEVMDIVDCLFV 363 (435)
Q Consensus 310 i~-~g-~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~---~d~m~~~e~l~~ 363 (435)
.. .. --|.|+||++||.|.+. .-+.-||+|+++|.-..++. .+++.++.+++.
T Consensus 95 ~~~~~lP~rl~~~g~vfR~e~p~-~gR~REf~Q~g~e~~g~~~~~ad~e~i~~~~~~l~ 152 (421)
T 1h4v_B 95 MKVWPQPVRLWMAGPMFRAERPQ-KGRYRQFHQVNYEALGSENPILDAEAVVLLYECLK 152 (421)
T ss_pred ccccCCCeEEEEecCeecCCCCC-CCCcccEEEccEEEECCCChhhhHHHHHHHHHHHH
Confidence 11 11 24999999999999764 33568999999998765432 144444444443
No 33
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=97.94 E-value=2.6e-05 Score=79.72 Aligned_cols=118 Identities=17% Similarity=0.192 Sum_probs=77.7
Q ss_pred hHHHHHHHHHHHHHHHhhcCCeeeecCceeeecCC------CCCcceeee-ccCCCceeecc--ChHHH---HhhhccCC
Q 013856 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS------EGGSAVFRL-DYKGQSACLAQ--SPQLH---KQMSICGD 313 (435)
Q Consensus 246 ~i~~~rs~i~~~~R~fl~~~gF~EV~TP~l~~~~~------egga~~F~~-~~~~~~~~L~~--Spql~---lq~li~~g 313 (435)
.-.+++..|.+.+|+.|...||.||.||++..... ....+.|.+ +--|+.+.|+- .|.+. ...+-...
T Consensus 22 ~~~~~~~~i~~~l~~~~~~~Gy~eI~tP~lE~~el~~~~g~~~~~~my~f~D~~g~~l~LRpd~T~~~aR~~~~~~~~~~ 101 (400)
T 3od1_A 22 EWYKTKKNICDQMTEEINLWGYDMIETPTLEYYETVGVVSAILDQQLFKLLDQQGNTLVLRPDMTAPIARLVASSLKDRA 101 (400)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETTTHHHHSSSCGGGSCEEECTTSCEEEECSCSHHHHHHHHHHHCSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCCccccceEEEECCCCCEEEECCCCHHHHHHHHHhhcccCC
Confidence 44577889999999999999999999999965431 112336765 34567777762 22322 22111122
Q ss_pred C-ceeEEEecceecCcCCCCccccchhhheeeecccccH---HHHHHHHHHHHHH
Q 013856 314 F-GRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHY---SEVMDIVDCLFVT 364 (435)
Q Consensus 314 ~-~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~---~d~m~~~e~l~~~ 364 (435)
+ -|.|+||+|||.|.+. .-+.-||+|+++|.-..++. -+++.++.+++..
T Consensus 102 ~P~r~~y~g~vfR~e~~~-~gR~Ref~Q~g~ei~G~~~~~aDaEvi~l~~~~l~~ 155 (400)
T 3od1_A 102 YPLRLAYQSNVYRAQQNE-GGKPAEFEQLGVELIGDGTASADGEVIALMIAALKR 155 (400)
T ss_dssp SCEEEEEEEEEECCCC----CCCSEEEEEEEEEESCCSHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCEEeCCCCC-CCCCCccEEeEEEEECCCChHhHHHHHHHHHHHHHH
Confidence 2 4999999999999863 44678999999998665432 2566666666554
No 34
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=97.94 E-value=1.5e-05 Score=83.20 Aligned_cols=118 Identities=17% Similarity=0.212 Sum_probs=77.8
Q ss_pred hHHHHHHHHHHHHHHHhhcCCeeeecCceeeecCC---C-CC------cceeee-ccC-CCceeecc--ChHHH---Hhh
Q 013856 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---E-GG------SAVFRL-DYK-GQSACLAQ--SPQLH---KQM 308 (435)
Q Consensus 246 ~i~~~rs~i~~~~R~fl~~~gF~EV~TP~l~~~~~---e-gg------a~~F~~-~~~-~~~~~L~~--Spql~---lq~ 308 (435)
.-.+++..|.+.+|+.|...||.||.||+|..... . |. .+.|.+ +-- |+.+.|+- .|.+. .+.
T Consensus 44 ~~~~~~~~l~~~i~~~~~~~Gy~eI~tP~le~~el~~~~~G~~~d~~~~~my~~~D~~~g~~l~LRPd~t~~~ar~~~~~ 123 (467)
T 4e51_A 44 QDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTPLFTRGIGEVTDIVEKEMYSFVDALNGENLTLRPENTAAVVRAAIEH 123 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTCTTSHHHHHTCCEEECTTTCCEEEECSCSHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhccCCcccccccceEEEecCCCCCEEEeCcccHHHHHHHHHHc
Confidence 45678899999999999999999999999976431 1 22 235765 334 77788872 23322 221
Q ss_pred hccCC-CceeEEEecceecCcCCCCccccchhhheeeecccccH---HHHHHHHHHHHHH
Q 013856 309 SICGD-FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHY---SEVMDIVDCLFVT 364 (435)
Q Consensus 309 li~~g-~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~---~d~m~~~e~l~~~ 364 (435)
..... --|.|+||+|||.|.+.. -+.-||+|+++|+-..++. .+++.++.+++..
T Consensus 124 ~~~~~lP~r~~~~g~vfR~E~~~~-gR~ReF~Q~d~ei~g~~~~~adaEvi~l~~~~l~~ 182 (467)
T 4e51_A 124 NMLYDGPKRLWYIGPMFRHERPQR-GRYRQFHQVGVEALGFAGPDADAEIVMMCQRLWED 182 (467)
T ss_dssp TTTTTSCEEEEEEEEEECCCCC----CCSEEEEEEEEEETCCCSHHHHHHHHHHHHHHHH
T ss_pred ccccCCCEEEEEEccEEccCCCCC-CCcCceEEEEEEEEeCCChHHHHHHHHHHHHHHHH
Confidence 11111 249999999999998644 4567999999997544321 3466666665554
No 35
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=97.91 E-value=2e-05 Score=80.72 Aligned_cols=104 Identities=20% Similarity=0.248 Sum_probs=72.8
Q ss_pred hHHHHHHHHHHHHHHHhhcCCeeeecCceeeecCC---C-CC------cceeee-ccCCCceeecc--ChHHHHhhhcc-
Q 013856 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---E-GG------SAVFRL-DYKGQSACLAQ--SPQLHKQMSIC- 311 (435)
Q Consensus 246 ~i~~~rs~i~~~~R~fl~~~gF~EV~TP~l~~~~~---e-gg------a~~F~~-~~~~~~~~L~~--Spql~lq~li~- 311 (435)
.-.+++..|.+.+|+.|...||.||.||++..... . |. .+.|.+ +--|+.+.|+- .|.+..-.+-.
T Consensus 16 ~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~g~~l~Lrpd~t~~~aR~~~~~~ 95 (423)
T 1htt_A 16 GETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDRNGDSLTLRPEGTAGCVRAGIEHG 95 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEECBCCSEEEHHHHHHHHCSSSHHHHHTCEEEECTTSCEEEECSCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEecccccCHHHHHhhccCCchhhhhhheEEEEcCCCCEEEeCCCchHHHHHHHHhcc
Confidence 34678889999999999999999999999987431 1 21 246776 44567777773 22332211101
Q ss_pred --CC-CceeEEEecceecCcCCCCccccchhhheeeeccccc
Q 013856 312 --GD-FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKH 350 (435)
Q Consensus 312 --~g-~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~ 350 (435)
.. --|.|+||++||.|.+. .-+.-||+|+++|.-..++
T Consensus 96 ~~~~~P~rl~~~g~vfR~e~p~-~gR~Ref~Q~d~e~~g~~~ 136 (423)
T 1htt_A 96 LLYNQEQRLWYIGPMFRHERPQ-KGRYRQFHQLGCEVFGLQG 136 (423)
T ss_dssp CSTTCCEEEEEEEEEECCCCCC-SSCCSEEEEEEEEEESCCS
T ss_pred cccCCCeEEEEEcCEecCCCCC-CCccceeEEeeEEEECCCC
Confidence 11 25999999999999763 4467899999999876553
No 36
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=97.89 E-value=3.9e-05 Score=80.67 Aligned_cols=100 Identities=11% Similarity=0.076 Sum_probs=69.1
Q ss_pred hHHHHHHHHHHHHHHHhhcCCeeeecCceeeecCC-------CC-Ccceeeecc---------CCCceeeccChHHHHhh
Q 013856 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS-------EG-GSAVFRLDY---------KGQSACLAQSPQLHKQM 308 (435)
Q Consensus 246 ~i~~~rs~i~~~~R~fl~~~gF~EV~TP~l~~~~~-------eg-ga~~F~~~~---------~~~~~~L~~Spql~lq~ 308 (435)
.-.+++.+|++++++.+.++||.||.||.|..... ++ +.+.|.+.- .+.++||.-..+.-+=.
T Consensus 199 ~GarL~raL~~f~~d~~~~~Gy~EV~~P~lv~~el~~~sG~l~~f~eemy~v~~~g~~~~~~~~~~~l~L~PTaE~~l~~ 278 (522)
T 3vbb_A 199 VLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQEVAQLSQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAA 278 (522)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHSCCC-CCSCCCEEC------------CCEEECSSTHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECCcccchHHHhhcCCcccCcccceEeecCCccccccccCcceeEcccCcHHHHH
Confidence 56789999999999999999999999999977432 11 234676643 24678998766554432
Q ss_pred hccC------CC-ceeEEEecceecCcCC------CCccccchhhheeee
Q 013856 309 SICG------DF-GRVFETGPVFRAEDSY------THRHLCEFTGLDVEM 345 (435)
Q Consensus 309 li~~------g~-~rVfeIgp~FR~E~s~------t~rHl~EFt~lE~e~ 345 (435)
+... .+ =|+|++|+|||+|.+. +.--.-||+|.|.+.
T Consensus 279 l~~~ei~s~~dLPlr~~~~s~cFR~Eags~GrdtrGL~RvhQF~kvE~~~ 328 (522)
T 3vbb_A 279 LHRDEWLRPEDLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFV 328 (522)
T ss_dssp TSTTCEECTTTCCEEEEEEEEEECSCCCC----CCCSSSCSEEEEEEEEE
T ss_pred HHhhhecccccCCeeEEEecccccCCCCcCCccCCCcceeeeeEEEEEEE
Confidence 2211 12 3799999999999741 112335999999974
No 37
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=97.89 E-value=2.9e-05 Score=82.74 Aligned_cols=112 Identities=19% Similarity=0.204 Sum_probs=77.3
Q ss_pred hHHHHHHHHHHHHHHHhhcCCeeeecCceeeecCC--C-C-----Ccceeee-ccCCCceeeccCh-----HHHHhhhcc
Q 013856 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS--E-G-----GSAVFRL-DYKGQSACLAQSP-----QLHKQMSIC 311 (435)
Q Consensus 246 ~i~~~rs~i~~~~R~fl~~~gF~EV~TP~l~~~~~--e-g-----ga~~F~~-~~~~~~~~L~~Sp-----ql~lq~li~ 311 (435)
.-.+++..|.+.+|+.|...||.||.||+|..... . | +.+.|.+ +--|+.++|+--. .+|...+..
T Consensus 45 ~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sG~~~~~~~~m~~~~d~~~~~~~LrP~~~~~~~~~~~~~~~s 124 (572)
T 2j3l_A 45 LANRVLEKLKTIMREEFEKIDAVEMLMPALLPAELWKESGRYETYGPNLYRLKDRNDRDYILGPTHEETFTELIRDEINS 124 (572)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEECBCCSEEETHHHHHHSHHHHSCTTSCEEECTTCCEEEECSCCHHHHHHHHHHHCCB
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHhcCCccccchheEEEecCCCCeEEEccccHHHHHHHHHhhccC
Confidence 45788999999999999999999999999987531 1 2 2235665 3356889997444 244543321
Q ss_pred -CCC-ceeEEEecceecCcCCCCcc----ccchhhheeeecccccHHHHHHHHHH
Q 013856 312 -GDF-GRVFETGPVFRAEDSYTHRH----LCEFTGLDVEMEIKKHYSEVMDIVDC 360 (435)
Q Consensus 312 -~g~-~rVfeIgp~FR~E~s~t~rH----l~EFt~lE~e~a~~~~~~d~m~~~e~ 360 (435)
..+ -|+|+||+|||+|.+ . +| .-||+|+|+|.-..+ -.++...+..
T Consensus 125 ~~~lP~r~~~~g~~fR~E~~-~-~~Gl~R~ReF~q~d~~~f~~~-~~~~~~e~~~ 176 (572)
T 2j3l_A 125 YKRLPLNLYQIQTKYRDEKR-S-RSGLLRGREFIMKDGYSFHAD-EASLDQSYRD 176 (572)
T ss_dssp GGGCCEEEEEEEEEECCCSS-C-CTGGGSCSEEEEEEEEEEESS-HHHHHHHHHH
T ss_pred hhhcCHhhheecCeeccCcC-c-ccCccccceeEEeeeEEEcCC-HHHHHHHHHH
Confidence 122 399999999999986 3 33 379999999987653 3344333333
No 38
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=97.88 E-value=4.2e-05 Score=79.57 Aligned_cols=112 Identities=19% Similarity=0.164 Sum_probs=77.4
Q ss_pred hHHHHHHHHHHHHHHHhhcCCeeeecCceeeecCC----CC-----CcceeeeccC-----CCceeeccChH-----HHH
Q 013856 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS----EG-----GSAVFRLDYK-----GQSACLAQSPQ-----LHK 306 (435)
Q Consensus 246 ~i~~~rs~i~~~~R~fl~~~gF~EV~TP~l~~~~~----eg-----ga~~F~~~~~-----~~~~~L~~Spq-----l~l 306 (435)
.-.+++..|.+.+|+.|...||.||.||+|..... -| +.+.|.+..- +..++|+--.. +|.
T Consensus 36 ~g~~l~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~G~~~~~~~emy~~~d~g~~~~~~~l~LRP~~~~~i~~~~~ 115 (459)
T 1nj8_A 36 YGFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWVTHGGKTQLDVKLALRPTSETPIYYMMK 115 (459)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHCSSSGGGGGGCEEEEESSSSEEEEEEEECSSSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHcCCEEeeCCcccCHHHHhhhcCcccccchhhEEEeccCcccCCCeeEECCCCcHHHHHHHH
Confidence 45678899999999999999999999999987431 11 2346766443 57889885443 344
Q ss_pred hhhccC-CC-ceeEEEecceecCcCCCCc--cccchh-hheeeecccccHHHHHHHH
Q 013856 307 QMSICG-DF-GRVFETGPVFRAEDSYTHR--HLCEFT-GLDVEMEIKKHYSEVMDIV 358 (435)
Q Consensus 307 q~li~~-g~-~rVfeIgp~FR~E~s~t~r--Hl~EFt-~lE~e~a~~~~~~d~m~~~ 358 (435)
+..... .+ =|+|+||+|||+|.+.+.- -.-||+ |+|.+..+.+ -.++....
T Consensus 116 ~~~~s~r~LP~rl~qig~~fR~E~~~~rGl~R~REF~qq~d~~~~~~~-~~~a~~e~ 171 (459)
T 1nj8_A 116 LWVKVHTDLPIKIYQIVNTFRYETKHTRPLIRLREIMTFKEAHTAHST-KEEAENQV 171 (459)
T ss_dssp TTCCBTTSCCCCEEEEECCBCCCCSCCBTTTBCSBCSCEEEEEEEESS-HHHHHHHH
T ss_pred HhhhhcccCCeEEEEEccEecCccCCCCCceEeeeeeccCcEEEEECC-HHHHHHHH
Confidence 432221 23 3999999999999862111 345999 9999988875 45554443
No 39
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=97.88 E-value=6.4e-05 Score=77.41 Aligned_cols=115 Identities=11% Similarity=0.141 Sum_probs=75.3
Q ss_pred hHHHHHHHHHHHHHHHhhcCCeeeecCceeeecC----C---C-CCcceeeeccCCCceeeccChHHHHhhhccC-----
Q 013856 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS----S---E-GGSAVFRLDYKGQSACLAQSPQLHKQMSICG----- 312 (435)
Q Consensus 246 ~i~~~rs~i~~~~R~fl~~~gF~EV~TP~l~~~~----~---e-gga~~F~~~~~~~~~~L~~Spql~lq~li~~----- 312 (435)
.-.+++..|.+.+++.+.+.||.||.||+|.... + + -+.+.|.+. +.++||+-..+-.+-.++..
T Consensus 164 ~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~~--d~~l~L~Pt~e~~~~~~~~~~~~s~ 241 (421)
T 1ses_A 164 DLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIA--ETDLYLTGTAEVVLNALHSGEILPY 241 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTCTTTTGGGSCBBT--TSSEEECSSTHHHHHHTTTTCEEEG
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEeCCceecHHHHHhcCCCCcCchhcEEEc--CCeEEEeecCcHHHHHHhcccccCc
Confidence 4567888999999999999999999999998743 1 1 122345553 56788887666544333322
Q ss_pred -CC-ceeEEEecceecCcC------CCCccccchhhheeeecccccHHHHHHHHHHHH
Q 013856 313 -DF-GRVFETGPVFRAEDS------YTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLF 362 (435)
Q Consensus 313 -g~-~rVfeIgp~FR~E~s------~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~l~ 362 (435)
.+ -|+|++|+|||+|-+ .+.--.-||+|+|++.....+.++..+..++++
T Consensus 242 ~~LPlr~~~~g~~FR~E~g~~Gr~~~GL~R~rqF~q~E~~~f~~p~~e~s~~~~~e~~ 299 (421)
T 1ses_A 242 EALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELL 299 (421)
T ss_dssp GGCSEEEEEEEEEECCCCSCCCSCCCTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHH
T ss_pred hhCCEEEEecCCeecCCccccCcCCCCCeeeeeeeeeeEEEEeCCCHHHHHHHHHHHH
Confidence 12 399999999999952 121134599999987644321244444444444
No 40
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=97.88 E-value=3.3e-05 Score=80.42 Aligned_cols=117 Identities=16% Similarity=0.147 Sum_probs=75.5
Q ss_pred hHHHHHHHHHHHHHHHh-hcCCeeeecCceeeecC----C---CC-Ccceeeecc---CCCceeeccChH-----HHHhh
Q 013856 246 GIFRIQSQVGNIFRQFL-LSENFVEIHTPKLIAGS----S---EG-GSAVFRLDY---KGQSACLAQSPQ-----LHKQM 308 (435)
Q Consensus 246 ~i~~~rs~i~~~~R~fl-~~~gF~EV~TP~l~~~~----~---eg-ga~~F~~~~---~~~~~~L~~Spq-----l~lq~ 308 (435)
.-.+++..|.+.+|+.+ .+.||.||.||+|.... + ++ +.+.|.+.- -+..++|+--.+ +|.+.
T Consensus 62 ~g~~l~~~l~~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~emy~~~d~~~~~~~l~LrPt~~~~~~~~~~~~ 141 (460)
T 3uh0_A 62 NGAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKTLWEKSGHWENYADDMFKVETTDEEKEEYGLKPMNCPGHCLIFGKK 141 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCEECCCCSEEEHHHHHHHTCTTTSGGGSCEECC------CEEECSCSHHHHHHHHTTS
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCEEEECCeeccHHHHHhcCCccccccceEEEecCCCCCceEEEcccCcHHHHHHHHhc
Confidence 45788899999999999 99999999999997643 1 11 223566543 257788885543 33332
Q ss_pred hcc-CCC-ceeEEEecceecCcCC---CCccccchhhheeeecccccHHHHHHHHHHHHHH
Q 013856 309 SIC-GDF-GRVFETGPVFRAEDSY---THRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVT 364 (435)
Q Consensus 309 li~-~g~-~rVfeIgp~FR~E~s~---t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~l~~~ 364 (435)
... ..+ =|+|++|+|||+|.+. +..-.-||+|.|.+. |.. -++..+.+++++..
T Consensus 142 ~~s~r~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~q~d~~~-f~~-~e~~~~e~~~~i~~ 200 (460)
T 3uh0_A 142 DRSYNELPLRFSDFSPLHRNEASGALSGLTRLRKFHQDDGHI-FCT-PSQVKSEIFNSLKL 200 (460)
T ss_dssp CCBGGGCSEEEEECCEEECCCCTTTCBTTTBCSEEEEEEEEE-EEC-GGGHHHHHHHHHHH
T ss_pred cccccccCeEEEEecCeeeCCCCCCCCCceeeeeEEEeeEEE-EcC-HHHHHHHHHHHHHH
Confidence 221 122 3899999999999862 222346999999995 554 34444444444433
No 41
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=97.88 E-value=1.2e-05 Score=83.85 Aligned_cols=119 Identities=17% Similarity=0.214 Sum_probs=74.4
Q ss_pred hHHHHHHHHHHHHHHHhhcCCeeeecCceeeecC----C-CCCcc-eeeeccC----------------CCceeec--cC
Q 013856 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS----S-EGGSA-VFRLDYK----------------GQSACLA--QS 301 (435)
Q Consensus 246 ~i~~~rs~i~~~~R~fl~~~gF~EV~TP~l~~~~----~-egga~-~F~~~~~----------------~~~~~L~--~S 301 (435)
.-.+++..|.+.+|+.|...||.||.||++-... . +...+ .|++.-- |+.+.|| ..
T Consensus 24 ~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~~E~~~~~~~~G~~~ke~m~~~~d~~~~g~~~~~~~~~~~~g~~l~LRpd~T 103 (465)
T 3net_A 24 SEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDKSGDTGSEARALKFDQT 103 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHGGGCC--CBEEEEEEEC----------------CCEEECSCSH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHHhccCCCCccceEEEecccccccccccccccCCCCCEEEeCCCCh
Confidence 4557788999999999999999999999984421 1 22233 6765322 5777777 22
Q ss_pred hHH---HHhhhccCC-CceeEEEecceecCcCCCCccccchhhheeeecccccH-----HHHHHHHHHHHHHH
Q 013856 302 PQL---HKQMSICGD-FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHY-----SEVMDIVDCLFVTI 365 (435)
Q Consensus 302 pql---~lq~li~~g-~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~-----~d~m~~~e~l~~~i 365 (435)
|.+ +.+...... --|.|+||||||.|.+. .-+.-||+|+++|.-..++. -|++.++-+++..+
T Consensus 104 ~~~aR~~~~~~~~~~~p~r~~y~g~vfR~e~~~-~gr~Ref~Q~g~ei~G~~~~~a~~DaEvi~l~~~~l~~l 175 (465)
T 3net_A 104 VPLAAYIARHLNDLTFPFARYQMDVVFRGERAK-DGRFRQFRQCDIDVVGREKLSLLYDAQMPAIITEIFEAV 175 (465)
T ss_dssp HHHHHHHHHHGGGSCSSEEEEECCEEECBC-------CCEEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccCCCeEEEEeccEEecCCCC-CCCcceeEEeeEEEECCCCccchhhHHHHHHHHHHHHHc
Confidence 222 333221112 24999999999999863 44678999999997654321 25677766666543
No 42
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=97.87 E-value=2.5e-05 Score=81.21 Aligned_cols=115 Identities=10% Similarity=0.131 Sum_probs=77.0
Q ss_pred hHHHHHHHHHHHHHHHhhcCCeeeecCceeeecCC---CCCc-----ceeeeccCCCceeeccChHHHHhhhcc------
Q 013856 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EGGS-----AVFRLDYKGQSACLAQSPQLHKQMSIC------ 311 (435)
Q Consensus 246 ~i~~~rs~i~~~~R~fl~~~gF~EV~TP~l~~~~~---egga-----~~F~~~~~~~~~~L~~Spql~lq~li~------ 311 (435)
.-.+++..|.+.+++.+.+.||.||.||.|..... .|.. +.|.+. +.++||+-..+..+=.+..
T Consensus 191 ~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~~--d~~l~LrPt~e~~~~~~~~~~~~s~ 268 (455)
T 2dq0_A 191 EIVILDLALIRFALDRLIEKGFTPVIPPYMVRRFVEEGSTSFEDFEDVIYKVE--DEDLYLIPTAEHPLAGMHANEILDG 268 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHTTSCTTHHHHTCCBBT--TSSCEECSSTHHHHHHTTTTEEEET
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEeCCcccCHHHHHhcCCCCCChHhhCeec--CCcEEEcCcCcHHHHHHHHhCccCc
Confidence 45677899999999999999999999999987541 1221 245443 5788998665443322221
Q ss_pred CCC-ceeEEEecceecCcCCC------CccccchhhheeeecccccHHHHHHHHHHHHHH
Q 013856 312 GDF-GRVFETGPVFRAEDSYT------HRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVT 364 (435)
Q Consensus 312 ~g~-~rVfeIgp~FR~E~s~t------~rHl~EFt~lE~e~a~~~~~~d~m~~~e~l~~~ 364 (435)
..+ -|+|++|+|||+|.+.. ..-.-||+|.|++ .|.. -++..+..++++..
T Consensus 269 ~~LPlr~~~~g~~FR~E~~~~G~~~~GL~R~rqF~kvE~~-~f~~-pe~s~~~~~e~l~~ 326 (455)
T 2dq0_A 269 KDLPLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQF-VYSR-PEESWEWHEKIIRN 326 (455)
T ss_dssp TTCSEEEEEEEEEECCCTTCSSCSCCSSSSCSEEEEEEEE-EEEC-TTTHHHHHHHHHHH
T ss_pred hhCCEEEEEecCcccCCCCccccccCCceeeeeeEeeeEE-EecC-HHHHHHHHHHHHHH
Confidence 123 39999999999998521 1133599999998 4554 35665555555543
No 43
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=97.84 E-value=4.1e-05 Score=77.56 Aligned_cols=119 Identities=13% Similarity=0.123 Sum_probs=75.2
Q ss_pred hHHHHHHHHHHHHHHHhhcCCeeeecCceeeecCC---CC---C-cceeee-ccCCCceeecc--ChHHHH---hhhc-c
Q 013856 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EG---G-SAVFRL-DYKGQSACLAQ--SPQLHK---QMSI-C 311 (435)
Q Consensus 246 ~i~~~rs~i~~~~R~fl~~~gF~EV~TP~l~~~~~---eg---g-a~~F~~-~~~~~~~~L~~--Spql~l---q~li-~ 311 (435)
.-.+++..|...+|+.|...||.||.||++..... .| . .+.|.+ +--|+.+.|+- .|++.. ..+- .
T Consensus 35 ~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~el~~~~g~~~~~~~my~~~D~~g~~l~LRpd~T~~~aR~~~~~~~~~ 114 (373)
T 3rac_A 35 DFAKRRRAVETRLLSFVEDAGYEPVTSGLFEYVDTLLRARSPESSRDWIRLFDGGGDAVALRPEMTPSIARMAAPRVAAG 114 (373)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHTTSCTTSCCCCCBCCCCSSSCEEECSSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeEEECCceeeHHHHhhcCCccchhceEEEECCCCCEEEECCcCHHHHHHHHHhccccC
Confidence 34577889999999999999999999999976431 11 2 345655 33456677762 222221 1111 1
Q ss_pred CCCceeEEEecceecCcCC-----CCccccchhhheeeecccc-cH---HHHHHHHHHHHHH
Q 013856 312 GDFGRVFETGPVFRAEDSY-----THRHLCEFTGLDVEMEIKK-HY---SEVMDIVDCLFVT 364 (435)
Q Consensus 312 ~g~~rVfeIgp~FR~E~s~-----t~rHl~EFt~lE~e~a~~~-~~---~d~m~~~e~l~~~ 364 (435)
..--|.|+||+|||.|.+. ..-+.-||+|+++|.-..+ .. -+++.++.+++..
T Consensus 115 ~~P~r~~y~g~vfR~e~~g~~~~~~~gR~ReF~Q~g~ei~g~~d~~~aDaEvi~l~~~~l~~ 176 (373)
T 3rac_A 115 RTPIRWCYCERVYRRTDDPASLSWASGKAAESTQVGIERIGEEASVDVDMDVLRLLHEASAA 176 (373)
T ss_dssp CCCCEEEEEEEEEECC------------CEEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEcceEccCCCcccccccCCccceeEEeeeEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 2246999999999999751 2346789999999986544 22 2566666666654
No 44
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=97.83 E-value=3.2e-05 Score=83.75 Aligned_cols=110 Identities=19% Similarity=0.199 Sum_probs=75.2
Q ss_pred hHHHHHHHHHHHHHHHhhcCCeeeecCceeeecCC---CC-----CcceeeeccCCCceeeccChH-----HHHhhhccC
Q 013856 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EG-----GSAVFRLDYKGQSACLAQSPQ-----LHKQMSICG 312 (435)
Q Consensus 246 ~i~~~rs~i~~~~R~fl~~~gF~EV~TP~l~~~~~---eg-----ga~~F~~~~~~~~~~L~~Spq-----l~lq~li~~ 312 (435)
.-.+++..|.+.+|+.+.+.||.||.||+|..... -| +-+.|.++--+..++|+--.. +|.+.....
T Consensus 269 ~g~~l~~~l~~~~r~~~~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~~my~~d~~~~~~~LrP~~~~~~~~~~~~~~~sy 348 (642)
T 1qf6_A 269 DGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSENREYCIKPMNCPGHVQIFNQGLKSY 348 (642)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHHSHHHHHGGGCEEEEETTEEEEECSSSHHHHHHHHTTSCEEG
T ss_pred cHHHHHHHHHHHHHHHHHHcCCEEEECCcCccHHHHhhcCccccccccceeeecCCceEEecCCCCHHHHHHHHhhhhhc
Confidence 55788999999999999999999999999987531 02 233566554567888885443 344332211
Q ss_pred -CC-ceeEEEecceecCcCC---CCccccchhhheeeecccccHHHHHHH
Q 013856 313 -DF-GRVFETGPVFRAEDSY---THRHLCEFTGLDVEMEIKKHYSEVMDI 357 (435)
Q Consensus 313 -g~-~rVfeIgp~FR~E~s~---t~rHl~EFt~lE~e~a~~~~~~d~m~~ 357 (435)
.+ =|+|+||+|||+|.+. +..-.-||||.|.+. |.+ -+++...
T Consensus 349 r~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~-f~~-~~~~~~e 396 (642)
T 1qf6_A 349 RDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHI-FCT-EEQIRDE 396 (642)
T ss_dssp GGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEE-EEC-GGGHHHH
T ss_pred cccCeEEEEeccEEecCCCccccCCceeeeEEEccEEE-EcC-HHHHHHH
Confidence 22 3999999999999861 211346999999997 554 3343333
No 45
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=97.82 E-value=4.6e-05 Score=79.21 Aligned_cols=118 Identities=14% Similarity=0.155 Sum_probs=75.7
Q ss_pred hHHHHHHHHHHHHHHHhhcCCeeeecCceeeecCC---CCCc----ceeee-ccCCCceeecc--ChHHHH---hhhccC
Q 013856 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EGGS----AVFRL-DYKGQSACLAQ--SPQLHK---QMSICG 312 (435)
Q Consensus 246 ~i~~~rs~i~~~~R~fl~~~gF~EV~TP~l~~~~~---egga----~~F~~-~~~~~~~~L~~--Spql~l---q~li~~ 312 (435)
.-.+++..|...+|+.|...||.||.||++-.... ..|. +.|.+ +--|+.+.|+- .|.+.. +.....
T Consensus 41 ~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~G~~~~~~my~f~D~~g~~l~LRpd~T~~~aR~~~~~~~~~ 120 (456)
T 3lc0_A 41 EAMRCRRHLFDVFHATAKTFGFEEYDAPVLESEELYIRKAGEEITEQMFNFITKGGHRVALRPEMTPSLARLLLGKGRSL 120 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEGGGGCCCSCCHHHHTCEEEECSSSCEEEECSCSHHHHHHHHHHSCTTC
T ss_pred hHHHHHHHHHHHHHHHHHHCCCEEEECCcEeehhhhccccccchhhceEEEEcCCCCEEecCCcCHHHHHHHHHhcCccc
Confidence 34578899999999999999999999999977542 1132 25665 33567777762 222222 211111
Q ss_pred C-CceeEEEecceecCcCCCCccccchhhheeeecccccH---HHHHHHHHHHHHH
Q 013856 313 D-FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHY---SEVMDIVDCLFVT 364 (435)
Q Consensus 313 g-~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~---~d~m~~~e~l~~~ 364 (435)
. --|.|+||+|||.|.+. .-+.-||+|+++|.-..++. -+++.++.+++..
T Consensus 121 ~~P~r~~y~g~vfR~e~~~-~gR~ReF~Q~g~ei~G~~~~~~DaEvi~l~~~~l~~ 175 (456)
T 3lc0_A 121 LLPAKWYSIPQCWRYEAIT-RGRRREHYQWNMDIVGVKSVSAEVELVCAACWAMRS 175 (456)
T ss_dssp CSSEEEEECCEEECCCC------CCEEEEEEEEEESCCSTHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeccEEecCCCC-CCCccceEEEEEEEEcCCChHhhHHHHHHHHHHHHH
Confidence 1 35899999999999863 34678999999998654321 2456655555554
No 46
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=97.80 E-value=0.0001 Score=78.10 Aligned_cols=117 Identities=11% Similarity=0.134 Sum_probs=79.7
Q ss_pred hHHHHHHHHHHHHHHHhhcCCeeeecCceeeecCC--------CCCcceeeeccCCCceeeccChHHHHhhhccC-----
Q 013856 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS--------EGGSAVFRLDYKGQSACLAQSPQLHKQMSICG----- 312 (435)
Q Consensus 246 ~i~~~rs~i~~~~R~fl~~~gF~EV~TP~l~~~~~--------egga~~F~~~~~~~~~~L~~Spql~lq~li~~----- 312 (435)
.-.+++.+|++++|+.+.++||.||.||.|..... ..+.+.|.+. +.++||.-..+..+=.+...
T Consensus 273 ~Ga~l~~aL~~~~~~~~~~~Gy~ev~~P~lv~~~l~~~sG~~~~f~e~mf~~~--~~~~~L~PT~E~~~~~l~~~~i~s~ 350 (536)
T 3err_A 273 DLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIA--ETDLYLTGTAEVVLNALHSGEILPY 350 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTCTTTTGGGCCEET--TTTEEECSSTHHHHHHHTTTCEEEG
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHHhcCCcccChhhceEec--CCCEEEccCCcHHHHHHHhcccccH
Confidence 56789999999999999999999999999987431 1234467764 36889986665443222211
Q ss_pred -CC-ceeEEEecceecCcCC------CCccccchhhheeeecccccHHHHHHHHHHHHHH
Q 013856 313 -DF-GRVFETGPVFRAEDSY------THRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVT 364 (435)
Q Consensus 313 -g~-~rVfeIgp~FR~E~s~------t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~l~~~ 364 (435)
.+ =|+|++|+|||+|.+. +.--.-||+|.|.+.--...+++..+..++++..
T Consensus 351 ~~LPlr~~~~~~~fR~E~gs~Gr~~~GL~RvrqF~k~e~~~f~~pe~e~s~~~~e~~~~~ 410 (536)
T 3err_A 351 EALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLEN 410 (536)
T ss_dssp GGCSEEEEEEEEEECCCTTCTTSSCSTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHH
T ss_pred hhCCeeEEEecccccCCccccCCCCCCceeeeeeEEEEEEEEECCchHHHHHHHHHHHHH
Confidence 12 3899999999999631 2234559999999853333223666666666543
No 47
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=97.79 E-value=3.7e-05 Score=80.83 Aligned_cols=116 Identities=18% Similarity=0.165 Sum_probs=79.5
Q ss_pred hHHHHHHHHHHHHHHHhhcCCeeeecCceeeecC-CC--CC------cceeeeccC-----CCceeeccChH-----HHH
Q 013856 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS-SE--GG------SAVFRLDYK-----GQSACLAQSPQ-----LHK 306 (435)
Q Consensus 246 ~i~~~rs~i~~~~R~fl~~~gF~EV~TP~l~~~~-~e--gg------a~~F~~~~~-----~~~~~L~~Spq-----l~l 306 (435)
.-.+++..|.+.+|+.|.. ||.||.||+|.... -. .| -+.|.+..- +.+++|+--.+ +|.
T Consensus 69 ~g~~l~~~i~~~~~~~~~~-G~~ei~tP~l~~~~l~~~~sG~~~~f~~emy~~~d~g~~~~~~~l~LrPt~e~~i~~~~~ 147 (501)
T 1nj1_A 69 HGFMIRKNTLKILRRILDR-DHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPMFA 147 (501)
T ss_dssp HHHHHHHHHHHHHHHHHTT-TCEECCCCSEEEHHHHTTSHHHHHHTTTTCCEEEEETTEEEEEEEEECSSSHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHc-CCEEEecCcEecHHHHhcccCCcccCCcceEEEecCCCcccCCeeEEccCCCHHHHHHHH
Confidence 4567788899999999999 99999999998754 11 12 235666432 56789985543 445
Q ss_pred hhhccC-CC-ceeEEEecceecCcCCCCc--cccchh-hheeeecccccHHHHHHHHHHHHH
Q 013856 307 QMSICG-DF-GRVFETGPVFRAEDSYTHR--HLCEFT-GLDVEMEIKKHYSEVMDIVDCLFV 363 (435)
Q Consensus 307 q~li~~-g~-~rVfeIgp~FR~E~s~t~r--Hl~EFt-~lE~e~a~~~~~~d~m~~~e~l~~ 363 (435)
+..... .+ -|+|+||+|||+|.+.+.- =.-||+ |+|.+..+.+ .++....+++++.
T Consensus 148 ~~~~s~~~LPlr~~q~g~~fR~E~~~~rGl~R~REF~~q~e~~~~~~~-~e~a~~e~~~~l~ 208 (501)
T 1nj1_A 148 LWVRSHTDLPMRFYQVVNTFRYETKHTRPLIRVREITTFKEAHTIHAT-ASEAEEQVERAVE 208 (501)
T ss_dssp HHCCBTTTCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEEESS-HHHHHHHHHHHHH
T ss_pred hhhcccccCCEEEEeecCEeeCCCCCCCCCceeEEEeeeeeEEEEECC-HHHHHHHHHHHHH
Confidence 433322 33 3999999999999852211 234999 9999988875 5666555544443
No 48
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=97.76 E-value=4.7e-05 Score=79.81 Aligned_cols=50 Identities=22% Similarity=0.375 Sum_probs=41.3
Q ss_pred ceeEEEecceecCcCCCCccccchhhheeeeccc-ccHHHHHHHHHHHHHHH
Q 013856 315 GRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDCLFVTI 365 (435)
Q Consensus 315 ~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~-~~~~d~m~~~e~l~~~i 365 (435)
-|+|+||+|||+|.. +.+|+|+|+|+|..+... -++.|+..+++.++..+
T Consensus 348 iriFeiGrVFR~d~~-DatHlpeFhQlegl~~~~~v~f~dLKg~Le~~l~~l 398 (508)
T 3l4g_A 348 VKYFSIDRVFRNETL-DATHLAEFHQIEGVVADHGLTLGHLMGVLREFFTKL 398 (508)
T ss_dssp EEEEEEEEEECCSCC-CSSSCSEEEEEEEEEEEESCCHHHHHHHHHHHHHTT
T ss_pred ceEEEEccEEecCCC-CCCcCCeEEEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 489999999999984 789999999999976532 14788888888887765
No 49
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=97.75 E-value=4e-05 Score=80.03 Aligned_cols=118 Identities=11% Similarity=0.179 Sum_probs=78.8
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCeeeecCceeeecCC-C--C-----CcceeeeccCCCceeeccChHHHHhhhccC----
Q 013856 245 QGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS-E--G-----GSAVFRLDYKGQSACLAQSPQLHKQMSICG---- 312 (435)
Q Consensus 245 ~~i~~~rs~i~~~~R~fl~~~gF~EV~TP~l~~~~~-e--g-----ga~~F~~~~~~~~~~L~~Spql~lq~li~~---- 312 (435)
-.-.+++.+|++++++.+.++||.||.||.|..... + | +.+.|.+.--+.++||.-..+..+=.+...
T Consensus 205 p~GarL~~aL~~f~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~mf~v~~~~~~~~L~PTaE~~l~~l~~~~i~s 284 (484)
T 3lss_A 205 GGLVQLQVALVSYSLDFLVKRGYTPFYPPFFLNRDVMGEVAQLSQFDEELYQVSGDGDKKYLIATSEMPIAAYHRGRWFT 284 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHHHHHHTCCEEESSSSCEEECSSTHHHHHHHTTTCEES
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHHhcCCcccccccceEeecCCcceEEeccCcHHHHHHHhccccc
Confidence 356799999999999999999999999999987542 1 1 123566643367899987766554222111
Q ss_pred --CC-ceeEEEecceecCc-CC-----CCccccchhhheeeecccccHHH--HHHHHHHHHHH
Q 013856 313 --DF-GRVFETGPVFRAED-SY-----THRHLCEFTGLDVEMEIKKHYSE--VMDIVDCLFVT 364 (435)
Q Consensus 313 --g~-~rVfeIgp~FR~E~-s~-----t~rHl~EFt~lE~e~a~~~~~~d--~m~~~e~l~~~ 364 (435)
.+ =|+|++++|||+|. |. +.--.-||+|.|.+. |+. -++ ..+..++|+..
T Consensus 285 y~dLPlr~~~~s~cFR~Eags~Grdt~GL~RvrqF~kvE~~~-f~~-pe~~~s~~e~e~~~~~ 345 (484)
T 3lss_A 285 ELKEPLKYAGMSTCFRKEAGAHGRDTLGIFRVHQFDKIEQFV-VCS-PRQEESWRHLEDMITT 345 (484)
T ss_dssp CCSSCEEEEEEEEEECCCTTCSSSCCSTTSSCSEEEEEEEEE-EEC-SSTTHHHHHHHHHHHH
T ss_pred hhhCCeeEEeecCccCCCCCcCCcccCCcceeeeEEEEEEEE-EeC-cchHHHHHHHHHHHHH
Confidence 12 38999999999996 31 112234999999974 332 233 55555555443
No 50
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=97.69 E-value=6.1e-05 Score=78.48 Aligned_cols=102 Identities=20% Similarity=0.237 Sum_probs=72.5
Q ss_pred hHHHHHHHHHHHHHHHhhcCCeeeecCceeeecCC---CC-----CcceeeeccCCCceeeccChH-----HHHhhhccC
Q 013856 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EG-----GSAVFRLDYKGQSACLAQSPQ-----LHKQMSICG 312 (435)
Q Consensus 246 ~i~~~rs~i~~~~R~fl~~~gF~EV~TP~l~~~~~---eg-----ga~~F~~~~~~~~~~L~~Spq-----l~lq~li~~ 312 (435)
.-.+++..|.+.+|+.|...||.||.||+|..... .| +.+.|.++.-|..++|+--.. +|.+.+-..
T Consensus 47 ~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sg~~~~~~~emy~~d~~~~~l~LRP~~t~~i~~~~~~~~~s~ 126 (471)
T 3a32_A 47 GGGPIRYALAEVLAKFHARRGYYVVETPIIASTELFKVSGHIEFYRNNMYLFDIEGHEFAVKPMNCPYHILLFLNEVAKH 126 (471)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHTCCCTTGGGGSEEEEETTEEEEECSCSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHcCCEEEECCeeeehHHhhhccCccccccceEEEecCCcEEEEccccHHHHHHHHHhhhhhc
Confidence 45678899999999999999999999999987531 12 234677766678889984432 233322111
Q ss_pred ----CC-ceeEEEecceecCcCC---CCccccchhhheeeecc
Q 013856 313 ----DF-GRVFETGPVFRAEDSY---THRHLCEFTGLDVEMEI 347 (435)
Q Consensus 313 ----g~-~rVfeIgp~FR~E~s~---t~rHl~EFt~lE~e~a~ 347 (435)
.+ -|+|+||+|||+|.+. +.--.-||+|+|.|.-.
T Consensus 127 r~~~~lP~rl~~~g~vfR~E~~~~~~Gl~R~REF~Q~~~e~f~ 169 (471)
T 3a32_A 127 RSKLPLPFKVFEFGRVHRYEPSGSIYGLLRVRGFTQDDAHIIV 169 (471)
T ss_dssp GGGSCSSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEE
T ss_pred cccccCCeEEeeccceeccCCCcccccceeEEEEEECCeEEEc
Confidence 33 4999999999999752 11134699999999764
No 51
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=97.67 E-value=0.00014 Score=76.41 Aligned_cols=119 Identities=14% Similarity=0.200 Sum_probs=79.9
Q ss_pred hHHHHHHHHHHHHHHHhhcCCeeeecCceeeecCC--------CCCc-ceeeeccC-CCceeeccChHHHHhhhccC---
Q 013856 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS--------EGGS-AVFRLDYK-GQSACLAQSPQLHKQMSICG--- 312 (435)
Q Consensus 246 ~i~~~rs~i~~~~R~fl~~~gF~EV~TP~l~~~~~--------egga-~~F~~~~~-~~~~~L~~Spql~lq~li~~--- 312 (435)
.-.++..+|++++++.+.+.||.||.||.|..... ..+. +.|.+.-- +.++||+-..+..+=.+...
T Consensus 217 ~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~emf~v~~~~~~~l~L~PTaE~~~~~l~~~~i~ 296 (501)
T 1wle_A 217 AGALLQHGLVNFTLNKLIHRGFTPMTVPDLLRGVVFEGCGMTPNAKPSQIYNIDPSRFEDLNLAGTAEVGLAGYFMDHSV 296 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHHHTCCSSSSSCSSCBBCTTTSSSCEECSSHHHHHHHHHTTEEE
T ss_pred hHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHHhhcCCCccCccccEEEecCCCCeEEECCcCcHHHHHHHhhccC
Confidence 46788889999999999999999999999987431 1123 56766432 46889987666433222111
Q ss_pred ---CC-ceeEEEecceecCcC-----CCCccccchhhheeeecccccHHHHHHHHHHHHHH
Q 013856 313 ---DF-GRVFETGPVFRAEDS-----YTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVT 364 (435)
Q Consensus 313 ---g~-~rVfeIgp~FR~E~s-----~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~l~~~ 364 (435)
.+ =|+|++|+|||+|-+ .+.--.-||+|.|.+.--....++..+..++|+..
T Consensus 297 s~~~LPlrl~~~s~~FR~Ea~~G~d~~GL~RvhqF~kvE~~~f~~pe~e~s~~~~e~~l~~ 357 (501)
T 1wle_A 297 AFRDLPIRMVCSSTCYRAETDTGKEPWGLYRVHHFTKVEMFGVTGPGLEQSSELLEEFLSL 357 (501)
T ss_dssp EGGGCSEEEEEEEEEECCCCSCC--CCSSSSCSEEEEEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred CcccCCeeEEeccCcccCCCCCCCCCcCceeeeeeeeeeEEEEeCCcHHHHHHHHHHHHHH
Confidence 12 389999999999965 11112358999999875443114666666666543
No 52
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=97.67 E-value=0.00011 Score=76.60 Aligned_cols=117 Identities=12% Similarity=0.134 Sum_probs=79.1
Q ss_pred hHHHHHHHHHHHHHHHhhcCCeeeecCceeeecCC---CC-----CcceeeeccCCCceeeccChHHHHhhhccCC----
Q 013856 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EG-----GSAVFRLDYKGQSACLAQSPQLHKQMSICGD---- 313 (435)
Q Consensus 246 ~i~~~rs~i~~~~R~fl~~~gF~EV~TP~l~~~~~---eg-----ga~~F~~~~~~~~~~L~~Spql~lq~li~~g---- 313 (435)
.-.+++.+|++++++.+.++||.||.||.|..... .| +.+.|.+.--+.++||.-..+.-+=.++..-
T Consensus 183 ~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~l~~f~eemf~v~~~~~~~~LipTaE~pl~~l~~~ei~~S 262 (485)
T 3qne_A 183 YGVFLNQALINYGLSFLSSKGYVPLQAPVMMNKEVMAKTAQLSQFDEELYKVIDGEDEKYLIATSEQPISAYHAGEWFES 262 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHHHHTTTCCEEEETTEEEEECSSTHHHHHHHTTTCEESS
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCCccccccceEEEeCCCCeEEEeccccHHHHHHHhcccccc
Confidence 56789999999999999999999999999987542 11 2345666433567888766554443332221
Q ss_pred ----C-ceeEEEecceecCcCC------CCccccchhhheeeecccccHHHHHHHHHHHHHH
Q 013856 314 ----F-GRVFETGPVFRAEDSY------THRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVT 364 (435)
Q Consensus 314 ----~-~rVfeIgp~FR~E~s~------t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~l~~~ 364 (435)
+ =|+|++++|||+|.+. +.--.-||+|.|.+. |+. -++..+..++|+..
T Consensus 263 ~y~dLPlr~~~~s~cfR~Eag~~Grdt~GL~RvhqF~kvE~~~-f~~-pe~s~~e~e~ml~~ 322 (485)
T 3qne_A 263 PAEQLPVRYAGYSSCFRREAGSHGKDAWGIFRVHAFEKIEQFV-LTE-PEKSWEEFDRMIGC 322 (485)
T ss_dssp HHHHCCEEEEEEEEEECSCCC-----CCSSSSCSEEEEEEEEE-EEC-GGGHHHHHHHHHHH
T ss_pred chhcCCeeEEEecccccCCCCCCCccCCCceeeeeeeeeeEEE-EeC-HHHHHHHHHHHHHH
Confidence 1 2799999999999742 212234999999986 443 35566666655543
No 53
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=97.63 E-value=8.5e-05 Score=78.33 Aligned_cols=117 Identities=13% Similarity=0.146 Sum_probs=82.1
Q ss_pred hHHHHHHHHHHHHHHHhhcCCeeeecCceeeecCC---CCC------cceeeeccC-----CCceeeccChH-----HHH
Q 013856 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EGG------SAVFRLDYK-----GQSACLAQSPQ-----LHK 306 (435)
Q Consensus 246 ~i~~~rs~i~~~~R~fl~~~gF~EV~TP~l~~~~~---egg------a~~F~~~~~-----~~~~~L~~Spq-----l~l 306 (435)
.-.+++..|.+.+|+.|.+.||.||.||+|.+... ++| .+.|.+..- +.+++|+-..+ +|.
T Consensus 53 ~G~~i~~~L~~~~~~~~~~~Gy~eV~tP~l~~~el~~k~sgh~~~f~~emy~v~d~g~~~~~~~l~LrPt~e~~i~~~~~ 132 (518)
T 3ial_A 53 YGFFMENAIMRLCEEEYAKVGISQILFPTVIPESFLKKESDHIKGFEAECFWVEKGGLQPLEERLALRPTSETAIYSMFS 132 (518)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTSSHHHHHHHGGGCEEEEEETTEEEEEEEEECSSSHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHcCCEEEEcccccCHHHHHhhcCCcccccccEEEEecCCCcccCcceeECCCCcHHHHHHHH
Confidence 55688899999999999999999999999987541 222 235666432 46889985553 444
Q ss_pred hhhcc-CCC-ceeEEEecceecCcCCC--CccccchhhheeeecccccHHHHHHHHHHHHH
Q 013856 307 QMSIC-GDF-GRVFETGPVFRAEDSYT--HRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFV 363 (435)
Q Consensus 307 q~li~-~g~-~rVfeIgp~FR~E~s~t--~rHl~EFt~lE~e~a~~~~~~d~m~~~e~l~~ 363 (435)
..... ..+ =|+|++|+|||+|-+.+ .--.-||+|.|.+...++ .+++...++.++.
T Consensus 133 ~~i~SyrdLPlrl~q~~~~fR~E~~~~~GL~R~REF~q~e~h~f~~~-~e~a~~e~~~~l~ 192 (518)
T 3ial_A 133 KWVRSYKDLPLKIHQTCTIFRHETKNTKPLIRVREIHWNEAHCCHAT-AEDAVSQLSDYWK 192 (518)
T ss_dssp HHCCBGGGCCEEEEEEEEEECTTCCSCBTTTBCSEEEEEEEEEEESS-HHHHHHHHHHHHH
T ss_pred hhhcccccCCeEEEEEeceecCCCCCCCCCceeeEEEEeeEEEEECC-HHHHHHHHHHHHH
Confidence 43322 133 38999999999994322 113469999999997665 6777776666653
No 54
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=97.61 E-value=0.00012 Score=77.19 Aligned_cols=115 Identities=18% Similarity=0.224 Sum_probs=76.9
Q ss_pred hHHHHHHHHHHHHHH-HhhcCCeeeecCceeeecC----C---CC-Ccceeeec-----c--------------------
Q 013856 246 GIFRIQSQVGNIFRQ-FLLSENFVEIHTPKLIAGS----S---EG-GSAVFRLD-----Y-------------------- 291 (435)
Q Consensus 246 ~i~~~rs~i~~~~R~-fl~~~gF~EV~TP~l~~~~----~---eg-ga~~F~~~-----~-------------------- 291 (435)
.-.+++..|.+.+++ ++...||.||.||+|.+.. + ++ +-+.|.+. .
T Consensus 229 ~G~~L~~~L~~~~~~e~~~~~G~~EV~tP~L~~~el~~~SGh~~~F~demy~v~~~~~Rd~~~~e~~~~~~~~~~~~~~~ 308 (522)
T 2cja_A 229 QSARIFRTFEKIVLEELLEPLGYREMIFPKLVTWEVWMKSGHAKGVYPEIYYVCPPQTRDPDYWEEVADYYKVTHEVPTK 308 (522)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHTCEECBCCSEEEHHHHHHHTGGGTCGGGCCEEECBSCCCHHHHHHHHHHHHHHSSCCHH
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCEEEECCCcccHHHHhhcCCcCccccceeeeecCCccchhhhhhhhhhhhcccccccc
Confidence 456788899999996 6889999999999998743 1 11 12245552 0
Q ss_pred ------CCCceeeccChHH-----HHhhhccC-CC-ceeEE-EecceecCcC--CCCccccchhhheeeecccccHHHHH
Q 013856 292 ------KGQSACLAQSPQL-----HKQMSICG-DF-GRVFE-TGPVFRAEDS--YTHRHLCEFTGLDVEMEIKKHYSEVM 355 (435)
Q Consensus 292 ------~~~~~~L~~Spql-----~lq~li~~-g~-~rVfe-Igp~FR~E~s--~t~rHl~EFt~lE~e~a~~~~~~d~m 355 (435)
-+..+||+-..+- |....... .+ =|+|+ ||+|||+|.. +..--.-||+|.|++. |.+ -++..
T Consensus 309 ~~~~~~~~~~l~LrPt~e~~i~~~f~~~i~s~~~LPlrl~q~ig~~FR~Epgs~~GL~R~REF~q~E~~~-F~~-pe~s~ 386 (522)
T 2cja_A 309 LIKEKIAEPIGGMCYAQCPPFWMYVAGETLPNEEIPVKVFDRSGTSHRYESGGIHGIERVDEFHRIEIVW-IGT-KEEVL 386 (522)
T ss_dssp HHHHHBCCCCEEECSSSSGGGGGGTTTCEECGGGCSEEEEECSSEEECCCSSSCCCTTSCSEEEEEEEEE-EEE-HHHHH
T ss_pred ccccccCCCcEEEccCCcHHHHHHHHhcccccccCCeeEEEEcCceEeCCCCCCCCCeEeEEEEEeeEEE-EeC-hHHHH
Confidence 2467888854432 22221211 12 28999 9999999943 2223456999999998 664 67777
Q ss_pred HHHHHHH
Q 013856 356 DIVDCLF 362 (435)
Q Consensus 356 ~~~e~l~ 362 (435)
+..++++
T Consensus 387 ee~ee~i 393 (522)
T 2cja_A 387 KCAEELH 393 (522)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777777
No 55
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=97.58 E-value=0.00019 Score=74.15 Aligned_cols=118 Identities=14% Similarity=0.199 Sum_probs=73.5
Q ss_pred hHHHHHHHHHHHHHHHhhcCCeeeecCceeeecC--CC-CCc---ceeee-ccCCCceeecc--ChHHHHhhhccC--CC
Q 013856 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS--SE-GGS---AVFRL-DYKGQSACLAQ--SPQLHKQMSICG--DF 314 (435)
Q Consensus 246 ~i~~~rs~i~~~~R~fl~~~gF~EV~TP~l~~~~--~e-gga---~~F~~-~~~~~~~~L~~--Spql~lq~li~~--g~ 314 (435)
.-.+++..|.+.+|+.|...||.||.||++.... .. .|. +.|++ +--|+.+.|+- .+.+-- ++... .-
T Consensus 26 ~~~~~~~~i~~~~~~~~~~~Gy~eI~tP~le~~el~~~~~g~~~~~~y~f~D~~g~~l~LRPd~T~~~aR-~~~~~~~~p 104 (464)
T 4g84_A 26 RQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSKLIYDLKDQGGELLSLRYDLTVPFAR-YLAMNKLTN 104 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCC----CCCBBCCCSSCCEEECSCSHHHHHH-HHHHTTCSC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhccccCcCcceeEEEECCCCCEEEeCCcCcHHHHH-HHHhcCCCC
Confidence 4457889999999999999999999999996543 11 122 24544 33467777773 222221 11111 12
Q ss_pred ceeEEEecceecCcCC-CCccccchhhheeeeccc-ccH---HHHHHHHHHHHHH
Q 013856 315 GRVFETGPVFRAEDSY-THRHLCEFTGLDVEMEIK-KHY---SEVMDIVDCLFVT 364 (435)
Q Consensus 315 ~rVfeIgp~FR~E~s~-t~rHl~EFt~lE~e~a~~-~~~---~d~m~~~e~l~~~ 364 (435)
-|.|+||++||.|... ..-+.-||+|+++|.-.. +.. -++|.++-+++..
T Consensus 105 ~k~~y~g~vfR~erp~~~~gR~Ref~Q~g~ei~G~~~~~~aDaEvi~l~~~~l~~ 159 (464)
T 4g84_A 105 IKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLKIMCEILSS 159 (464)
T ss_dssp EEEEEEEEEECCCC------CCSEEEEEEEEEESCCSTTHHHHHHHHHHHHHHHH
T ss_pred ceeEEEecceeccCCccccCccceeeecceeccCCccchhhHHHHHHHHHHHHHH
Confidence 4889999999999743 233567999999997542 111 2566666655553
No 56
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=97.56 E-value=0.00017 Score=75.93 Aligned_cols=118 Identities=14% Similarity=0.206 Sum_probs=72.2
Q ss_pred hHHHHHHHHHHHHHHHhhcCCeeeecCceeeecC---CCCCcc---eeee-ccCCCceeecc--ChHHHHhhhccCC--C
Q 013856 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS---SEGGSA---VFRL-DYKGQSACLAQ--SPQLHKQMSICGD--F 314 (435)
Q Consensus 246 ~i~~~rs~i~~~~R~fl~~~gF~EV~TP~l~~~~---~egga~---~F~~-~~~~~~~~L~~--Spql~lq~li~~g--~ 314 (435)
.-.+++..|.+.+|+.|...||.||.||++.... ...|.. .|.+ +--|+.+.|+- .+.+-- ++.... -
T Consensus 79 ~~~~~~~~ie~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~ge~~~~my~f~D~~g~~l~LRPd~T~~~aR-~~~~~~~~p 157 (517)
T 4g85_A 79 RQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSKLIYDLKDQGGELLSLRYDLTVPFAR-YLAMNKLTN 157 (517)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHHCC------CSCBBCCTTSCCEEECSCSHHHHHH-HHHHTTCSC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhhcccCcCcceeEEEECCCCCEEEeCCcCcHHHHH-HHHhCCCCC
Confidence 4567889999999999999999999999996532 111221 4543 23467777773 222211 011111 2
Q ss_pred ceeEEEecceecCcCC-CCccccchhhheeeeccccc--H--HHHHHHHHHHHHH
Q 013856 315 GRVFETGPVFRAEDSY-THRHLCEFTGLDVEMEIKKH--Y--SEVMDIVDCLFVT 364 (435)
Q Consensus 315 ~rVfeIgp~FR~E~s~-t~rHl~EFt~lE~e~a~~~~--~--~d~m~~~e~l~~~ 364 (435)
-|.|+||++||.|.+. ..-+.-||+|+++|.-...+ . -+++.++-+++..
T Consensus 158 ~k~yyig~vfR~Erp~~~~GR~ReF~Q~g~ei~G~~~~~~aDaEvi~l~~~~l~~ 212 (517)
T 4g85_A 158 IKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLKIMCEILSS 212 (517)
T ss_dssp EEEEEEEEEECCCC-------CCEEEEEEEEEESCCCTTHHHHHHHHHHHHHHHH
T ss_pred ceeEEEeceEeccCcccccCccceeeeeceeccCCccchHHHHHHHHHHHHHHHh
Confidence 4889999999999742 22256799999999765311 1 2566666665553
No 57
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C*
Probab=97.55 E-value=0.00014 Score=70.64 Aligned_cols=105 Identities=18% Similarity=0.186 Sum_probs=67.6
Q ss_pred HHHHHH--HHhhcCCeeeecCceeeecCCCCCcceeeeccCCCceeec--cChHHHHhhhccCC--CceeEEEecceecC
Q 013856 254 VGNIFR--QFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLA--QSPQLHKQMSICGD--FGRVFETGPVFRAE 327 (435)
Q Consensus 254 i~~~~R--~fl~~~gF~EV~TP~l~~~~~egga~~F~~~~~~~~~~L~--~Spql~lq~li~~g--~~rVfeIgp~FR~E 327 (435)
|.+.+| +.|...||.||.||++-....-.. +.| ++--|+.+.|+ ..|.+....+--.. --|.|++|+|||.|
T Consensus 6 le~~~r~~~~~~~~Gy~eI~tP~le~~~l~~~-d~f-~d~~g~~l~LRpd~T~~~a~~~~~~~~~~p~R~~y~g~vfR~e 83 (275)
T 1usy_A 6 FEKVFSFYSKATKKGFSPFFVPALEKAEEPAG-NFF-LDRKGNLFSIREDFTKTVLNHRKRYSPDSQIKVWYADFVYRYS 83 (275)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEEECSSCCS-SCE-EETTSCEEEECCCHHHHHHHHHTTCTTCCCEEEECCEEEEEEE
T ss_pred HHHHHHHHHHHHHCCCEEecCccccchhhhcc-ccc-CCCCCCEEEeCCcChHHHHHHHhhcCCCCceEEEEeceEEecC
Confidence 344555 999999999999999976543222 234 34456777777 33343322221112 35999999999999
Q ss_pred cCCCCccccchhhheeeecccccH---HHHHHHHHHHHHH
Q 013856 328 DSYTHRHLCEFTGLDVEMEIKKHY---SEVMDIVDCLFVT 364 (435)
Q Consensus 328 ~s~t~rHl~EFt~lE~e~a~~~~~---~d~m~~~e~l~~~ 364 (435)
.+.. -||+|+++|.-..++. -+++.++-+++..
T Consensus 84 ~~~~----Ref~Q~g~ei~g~~~~~~DaEvi~l~~~~l~~ 119 (275)
T 1usy_A 84 GSDL----VAEYQLGLEKVPRNSLDDSLEVLEIIVESASE 119 (275)
T ss_dssp TTEE----EEEEEEEEEEESCCSHHHHHHHHHHHHHHHHH
T ss_pred CCCC----CeeeEeCEEEecCCCchhHHHHHHHHHHHHHH
Confidence 8633 7999999998665432 3455555555543
No 58
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=97.53 E-value=0.00017 Score=76.04 Aligned_cols=117 Identities=12% Similarity=0.052 Sum_probs=78.4
Q ss_pred hHHHHHHHHHHHHHHHhhcCCeeeecCceeeecCC---CCC-c-----ceeeeccC-----CCceeeccChH-----HHH
Q 013856 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EGG-S-----AVFRLDYK-----GQSACLAQSPQ-----LHK 306 (435)
Q Consensus 246 ~i~~~rs~i~~~~R~fl~~~gF~EV~TP~l~~~~~---egg-a-----~~F~~~~~-----~~~~~L~~Spq-----l~l 306 (435)
.-++++..|.+.+|+.+.+.||.||.||+|..... +.| . +.|.+..- +.+++|+--.+ +|.
T Consensus 59 ~G~~i~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~k~sGh~~~f~~emy~~~d~g~~~l~e~l~LrPtse~~i~~~~~ 138 (519)
T 4hvc_A 59 WAYAIWEAIKDFFDAEIKKLGVENCYFPMFVSQSALEKEKTHVADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYA 138 (519)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCCSCGGGGGGCEEEEEETTEEEEEEEEECSSSHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHhcccCCcccccccceEEeccCCcccccceeeCCCCcHHHHHHHH
Confidence 45678899999999999999999999999976541 122 1 24544221 23588874432 455
Q ss_pred hhhccC-CC-ceeEEEecceecCcCCCC--ccccchhhheeeecccccHHHHHHHHHHHHH
Q 013856 307 QMSICG-DF-GRVFETGPVFRAEDSYTH--RHLCEFTGLDVEMEIKKHYSEVMDIVDCLFV 363 (435)
Q Consensus 307 q~li~~-g~-~rVfeIgp~FR~E~s~t~--rHl~EFt~lE~e~a~~~~~~d~m~~~e~l~~ 363 (435)
+..... ++ =|+|++|+|||.|-+.++ -=.-||+|.|.+..|++ .++....++.++.
T Consensus 139 ~~i~SyrdLPlrl~q~g~~fR~E~~~~~Gl~R~ReF~q~e~h~~~~~-~e~a~~E~~~~l~ 198 (519)
T 4hvc_A 139 KWVQSHRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFAT-MEEAAEEVLQILD 198 (519)
T ss_dssp HHCSSGGGCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEESS-HHHHHHHHHHHHH
T ss_pred hhccccccCCeEEEEEcCeeeCCCCCCCCCcceeEEEEeeEEEEecC-HHHHHHHHHHHHH
Confidence 543221 23 389999999999953221 12359999999998876 6666666665543
No 59
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A*
Probab=97.18 E-value=0.00065 Score=67.77 Aligned_cols=119 Identities=13% Similarity=0.053 Sum_probs=81.9
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCeeeecCceeeecCC-CC-C------cceeeeccC------------------------
Q 013856 245 QGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS-EG-G------SAVFRLDYK------------------------ 292 (435)
Q Consensus 245 ~~i~~~rs~i~~~~R~fl~~~gF~EV~TP~l~~~~~-eg-g------a~~F~~~~~------------------------ 292 (435)
....+++..|.+++|+ ..+.||.||.||.|..... ++ | -..|.+.-|
T Consensus 61 g~~a~L~~aLe~~~~~-~~~~Gy~ev~~P~lv~~~~~e~SGhl~~F~e~mf~v~~~~~d~~e~~~ll~~~~~~~~~~~~l 139 (346)
T 3mf2_A 61 ALYESIVERLAALITS-HREAGTEALRFPPVMSRAQLEKSGYLKSFPNLLGCVCGLHGTEREINAAVSRFDAGGDWTTSL 139 (346)
T ss_dssp HHHHHHHHHHHHHHHH-TCCTTCEEEECCSEEEHHHHHHTTHHHHCGGGCEEEEEECSCHHHHHHHHHHHHTTSCGGGGE
T ss_pred chHHHHHHHHHHHHHh-hHhcCCeEEECCCccCHHHHHhcCCcccChhhcceeecccccchhhhhhhhhhcccccccccc
Confidence 4566888899999999 8899999999999987542 11 1 124554322
Q ss_pred -CCceeeccCh-----HHHHhh-hccCCCceeEEEecceecCcCCCCccccchhhheeeecccccHHHHHHHHHHHHHHH
Q 013856 293 -GQSACLAQSP-----QLHKQM-SICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTI 365 (435)
Q Consensus 293 -~~~~~L~~Sp-----ql~lq~-li~~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~l~~~i 365 (435)
+.++||.-.. ++|... .+...=-|+-.+|+|||.|.|.+.-.+-+|+|.|+-. |. .-+++.+..++|+..+
T Consensus 140 ~~~d~~LiPtacvpl~~~~~~eg~i~~~plr~~~~g~CFR~EaS~GL~RvhqF~kvE~v~-~~-tpEqs~~e~e~l~~~a 217 (346)
T 3mf2_A 140 SPADLVLSPAACYPVYPIAASRGPLPKGGLRFDVAADCFRREPSKHLDRLQSFRMREYVC-IG-TPDDVSDFRERWMVRA 217 (346)
T ss_dssp EEEEEEECSSSSTTHHHHHHTTCSCCTTCEEEEEEEEEECCCCCSSTTSCSEEEEEEEEE-EE-SHHHHHHHHHHHHHHH
T ss_pred CCCCEEEcccccHHHHHHHccCCcccccCeEEEEECCccCCcCCCCCeeeeeeEEEEEEE-Ee-CHHHHHHHHHHHHHHH
Confidence 2367777554 455532 2333334666799999999987777888999998754 33 3678878777777654
Q ss_pred h
Q 013856 366 F 366 (435)
Q Consensus 366 ~ 366 (435)
-
T Consensus 218 e 218 (346)
T 3mf2_A 218 Q 218 (346)
T ss_dssp H
T ss_pred H
Confidence 3
No 60
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=97.08 E-value=0.00071 Score=71.13 Aligned_cols=34 Identities=3% Similarity=0.030 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHHHHHhh--cCCeeeecCceeeecC
Q 013856 246 GIFRIQSQVGNIFRQFLL--SENFVEIHTPKLIAGS 279 (435)
Q Consensus 246 ~i~~~rs~i~~~~R~fl~--~~gF~EV~TP~l~~~~ 279 (435)
.-.+++..|.+.+|+.+. ..||.||.||+|....
T Consensus 37 ~G~~l~~~l~~~~r~~~~~~~~g~~ev~tP~l~~~~ 72 (505)
T 1ati_A 37 LGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRL 72 (505)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEETT
T ss_pred cHHHHHHHHHHHHHHHHHHhhCCcEEEEccccCCHH
Confidence 346788999999999999 8999999999998753
No 61
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=96.94 E-value=0.0019 Score=68.15 Aligned_cols=50 Identities=14% Similarity=0.237 Sum_probs=40.3
Q ss_pred eeEEEecceecCcCCCCccccchhhheeeeccc-ccHHHHHHHHHHHHHHH
Q 013856 316 RVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDCLFVTI 365 (435)
Q Consensus 316 rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~-~~~~d~m~~~e~l~~~i 365 (435)
|+||||+|||.+...+.+|.+||.+++.-+... -++.|+...++.++..+
T Consensus 219 rlFEiGrVFr~D~~~d~th~~ef~qLaglv~G~~vdF~DLKG~Le~ll~~L 269 (549)
T 2du7_A 219 KLFSIDRCFRREQREDRSHLMSYHSASCVVVGEDVSVDDGKVVAEGLLAQF 269 (549)
T ss_dssp EEEEEEEECCCCSSCSSSCCSCEEEEEEEEECTTCCHHHHHHHHHHHHGGG
T ss_pred EEEEEeeEEecCCcccCcCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 899999999986531346999999999987764 14889999999888765
No 62
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A
Probab=96.89 E-value=0.0022 Score=65.79 Aligned_cols=87 Identities=13% Similarity=0.184 Sum_probs=56.2
Q ss_pred HHHHHHHHhhcC--------CeeeecC-ceeeecC--------CCCC-cce-eeeccCCCceeecc--ChHHHHhhhccC
Q 013856 254 VGNIFRQFLLSE--------NFVEIHT-PKLIAGS--------SEGG-SAV-FRLDYKGQSACLAQ--SPQLHKQMSICG 312 (435)
Q Consensus 254 i~~~~R~fl~~~--------gF~EV~T-P~l~~~~--------~egg-a~~-F~~~~~~~~~~L~~--Spql~lq~li~~ 312 (435)
+...||++|... ||.|+.+ |.+.+.. ...+ |.. -.+-|++...-||. ||-+..- +..
T Consensus 53 ~~~~i~~~f~~~~~~~~g~~Gf~e~~~~~~v~s~~~NFd~L~~p~dHpaR~~~Dtfyi~~~~vLRThts~~~~~~--l~~ 130 (415)
T 3cmq_A 53 IKERVKEHFYKQYVGRFGTPLFSVYDNLSPVVTTWQNFDSLLIPADHPSRKKGDNYYLNRTHMLRAHTSAHQWDL--LHA 130 (415)
T ss_dssp HHHHHHHHHHHHHHHCSSSCCCEEECCCCSEEEHHHHTGGGTCCTTCGGGCGGGSCBSSSSEEECSSGGGGHHHH--HHT
T ss_pred HHHHHHHHHHhhhccccCCCCcEEEcCCCccccHHHHHHHhCCCCCCCcccccceEEecCCeEEcCCCcHHHHHH--HHH
Confidence 345556666555 8999999 6665421 1111 111 11124566677874 4654443 345
Q ss_pred CCceeEEEecceecCcCCCCccccchhhhee
Q 013856 313 DFGRVFETGPVFRAEDSYTHRHLCEFTGLDV 343 (435)
Q Consensus 313 g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~ 343 (435)
+..|+|++|.|||.+.. +..|.|.|.++|-
T Consensus 131 ~~~k~~~~G~VyR~D~~-da~h~n~fhQ~eg 160 (415)
T 3cmq_A 131 GLDAFLVVGDVYRRDQI-DSQHYPIFHQLEA 160 (415)
T ss_dssp TCSEEEEEEEEECCCCC-BTTBCSEEEEEEE
T ss_pred CCCCEEEeeeEEeccch-hhhhhHHhcCCCc
Confidence 67799999999999974 7899999999984
No 63
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=96.80 E-value=0.002 Score=67.90 Aligned_cols=50 Identities=12% Similarity=0.214 Sum_probs=40.9
Q ss_pred eeEEEecceecCcCCCCccccchhhheeeeccc-ccHHHHHHHHHHHHHHH
Q 013856 316 RVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDCLFVTI 365 (435)
Q Consensus 316 rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~-~~~~d~m~~~e~l~~~i 365 (435)
|+||||+|||.+..-+..|.+||++++..+... .++.|+..+++.++..+
T Consensus 207 rLFEIG~VFr~d~~~d~th~~Ef~qLagli~G~~vdf~dLKgilE~LL~~L 257 (534)
T 2du3_A 207 KLFSIDRCFRREQGEDATRLYTYFSASCVLVDEELSVDDGKAVAEALLRQF 257 (534)
T ss_dssp EEEEEEEEECCCTTCSSSCCSEEEEEEEEEECSSCCHHHHHHHHHHHHGGG
T ss_pred eEEEEeeEEecCccccccccceeeEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 899999999986521557999999999988773 24889999999888765
No 64
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=96.71 E-value=0.0017 Score=70.84 Aligned_cols=32 Identities=19% Similarity=0.296 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHHHHhh-cCCeeeecCceeee
Q 013856 246 GIFRIQSQVGNIFRQFLL-SENFVEIHTPKLIA 277 (435)
Q Consensus 246 ~i~~~rs~i~~~~R~fl~-~~gF~EV~TP~l~~ 277 (435)
.=.+++..|.+.+|+.|. ..||.||.||+|.+
T Consensus 99 ~G~~l~~~Ie~~~r~~~~~~~g~~EV~tP~l~~ 131 (693)
T 2zt5_A 99 VGCALKNNIIQTWRQHFIQEEQILEIDCTMLTP 131 (693)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHTCEECCCCSEEE
T ss_pred ChHHHHHHHHHHHHHHHHHhcCcEEEEeCCccc
Confidence 346788999999999998 56999999999986
No 65
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=96.60 E-value=0.0077 Score=50.25 Aligned_cols=90 Identities=14% Similarity=0.207 Sum_probs=64.0
Q ss_pred eeEeccccCCCCCCEEEEEEEEeee-------ccCC--CceEEEEEEeCCeEEEEEEeeCCCCCCHHHHHHHhcCCCCce
Q 013856 92 WTEVGALNGSLKDQEVLIRGRVHTT-------RPVG--NKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESI 162 (435)
Q Consensus 92 ~~~i~~l~~~~~g~~V~v~GrV~~~-------R~~G--~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esi 162 (435)
+..|.+|. .|+.|.+.|+|.++ +..| .++.++.|.|+++.|.+.+-.... .....+..|++
T Consensus 7 ~~~I~~L~---~g~~v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D~TG~I~~t~w~~~~-------~~~~~l~~G~v 76 (115)
T 2k50_A 7 MDTISKLE---EGAETPVTGRVMKISSPRTFTTRKGREGKLANVIIADDTGELRAVFWTENI-------KLLKKFREGDV 76 (115)
T ss_dssp CCCTTTCC---TTCEEEEEEEEEEECCCEECCCTTSSCCEEEEEEEEETTEEEEEEEETTGG-------GGGGTCCTTSE
T ss_pred eEEHHHCC---CCCEeEEEEEEEECCCceEEEcCCCCEEEEEEEEEEeCCCeEEEEEeCchh-------hhhhcCCCCCE
Confidence 34566665 48899999999998 2345 578999999999999999874311 12357999999
Q ss_pred EEEEEEEecCCccCCCCceeEEEEEeEEEEeecC
Q 013856 163 VDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA 196 (435)
Q Consensus 163 V~V~G~v~~~~~~~~~~t~~lEI~v~~i~vls~~ 196 (435)
|.|.|.+.... -.|.++|.+.+...+.++
T Consensus 77 v~i~g~~v~~~-----f~g~~qL~~~~~~~i~~~ 105 (115)
T 2k50_A 77 IRIKDVNIRGG-----FGGRKEAHLMPRSTVEVL 105 (115)
T ss_dssp EEEEEEEECCC-----SSSSCEEEECTTCCEEEE
T ss_pred EEEEeeEEccc-----cCCeEEEEECCCceEEEC
Confidence 99999885321 114578887765555544
No 66
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=96.55 E-value=0.0042 Score=64.38 Aligned_cols=106 Identities=10% Similarity=0.076 Sum_probs=58.1
Q ss_pred HHHHHHHHHHH-HHHhhcCC-eeeecCceeeecCCCCCcceeeeccCCCceeecc--ChHHHHh---hhccC--CC-cee
Q 013856 248 FRIQSQVGNIF-RQFLLSEN-FVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQ--SPQLHKQ---MSICG--DF-GRV 317 (435)
Q Consensus 248 ~~~rs~i~~~~-R~fl~~~g-F~EV~TP~l~~~~~egga~~F~~~~~~~~~~L~~--Spql~lq---~li~~--g~-~rV 317 (435)
..+|+.|.+.+ |.|...+| +.||.||+......-|+-+-|. +||+- +|-.+.- .+... .+ =|+
T Consensus 104 ~~l~~nl~~~w~~~~~~~~~~~~eV~tp~~~~~~~SGH~d~~~-------~~LRPeTaqg~~~nfk~~~~s~r~~LP~~i 176 (459)
T 3ikl_A 104 VELRKNLAAEWWTSVVVFREQVFPVDALHHKPGPLLPGDSAFR-------GGLRENLLHGALEHYVNCLDLVNKRLPYGL 176 (459)
T ss_dssp HHHHHHHHHHHHHHHTTSSCSCEECCCCSBCCSCCCSSCSCCT-------TB-CSCSHHHHHHHTTTTTGGGTTBSSEEE
T ss_pred HHHHHHHHHHHHHHHhhccCceEeeccccccccccCcchhhhc-------ceECCCCChhHHHHHhhhhhhccccCCeEE
Confidence 47889999845 44545466 7779999965433444444444 77875 3322221 11111 22 269
Q ss_pred EEEecceecCcC-CCCcc----ccchhhheeeecccccHHHHHHHHHHHH
Q 013856 318 FETGPVFRAEDS-YTHRH----LCEFTGLDVEMEIKKHYSEVMDIVDCLF 362 (435)
Q Consensus 318 feIgp~FR~E~s-~t~rH----l~EFt~lE~e~a~~~~~~d~m~~~e~l~ 362 (435)
.+||+|||+|.. .+.+| .-|||+.|++. |.. -++..+..+.++
T Consensus 177 aqig~~FR~E~g~~~~~~GL~RvrEFtq~E~~~-F~~-Pe~~~e~~~~~~ 224 (459)
T 3ikl_A 177 AQIGVCFHPVFDTKQIRNGVKSIGEKTEASLVW-FTP-PRTSNQWLDFWL 224 (459)
T ss_dssp EEEEEEECCC----------CCCCEEEEEEEEE-EEC-GGGHHHHHHHHH
T ss_pred EEEeeeeecccccccCCCCcccccceeeeeEEE-EeC-hhHHHHHHHHHH
Confidence 999999999941 13333 26999999873 332 334444444443
No 67
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=96.53 E-value=0.026 Score=50.34 Aligned_cols=80 Identities=15% Similarity=0.157 Sum_probs=61.5
Q ss_pred CEEEEEEEEeeeccCCCceEEEEEEeCCe-EEEEEEeeCCCCCCHHHHHHHhcCCCCceEEEEEEEecCCccCCCCceeE
Q 013856 105 QEVLIRGRVHTTRPVGNKLAFVVVRERVS-TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQV 183 (435)
Q Consensus 105 ~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~-~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~l 183 (435)
+.|.|.|.|.+++... +-.+|.|.|++| .|.|++-.+.. ...-.....+..|++|.|.|.|..- .++.
T Consensus 48 ~~V~IvGiVv~~~~~~-~~~~ytIDD~TG~~I~cv~w~~~~---~~~~~~~~~l~~G~~VrV~G~v~~f-------r~~r 116 (159)
T 3kf6_A 48 RWIQIVGYIAAIDIYE-GKHVLTVDDCSGMVLRVVFIIQDD---FSMSKRAISMSPGNVVCVFGKINSF-------RSEV 116 (159)
T ss_dssp CEEEEEEEEEEEEEET-TEEEEEEECSSSCEEEEEEEGGGC---HHHHHHHTTCCTTCEEEEEEEEECS-------SSSC
T ss_pred EEEEEEEEEEEEEEeC-CEEEEEEecCCCCeEEEEEEccCC---CCcccccccCCCCCEEEEEEEEEee-------CCEE
Confidence 5799999999999887 447789999988 69999986532 1111223468999999999999632 2568
Q ss_pred EEEEeEEEEeec
Q 013856 184 EVQIKKLYCVSR 195 (435)
Q Consensus 184 EI~v~~i~vls~ 195 (435)
+|.+.++.++..
T Consensus 117 qI~~~~i~~v~d 128 (159)
T 3kf6_A 117 ELIAQSFEELRD 128 (159)
T ss_dssp EEEEEEEEEECS
T ss_pred EEEEEEEEECCC
Confidence 999999999863
No 68
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=96.51 E-value=0.0039 Score=66.54 Aligned_cols=51 Identities=16% Similarity=0.254 Sum_probs=41.1
Q ss_pred ceeEEEecceecCcCCCCccccchhhheeeeccc-ccHHHHHHHHHHHHHHH
Q 013856 315 GRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDCLFVTI 365 (435)
Q Consensus 315 ~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~-~~~~d~m~~~e~l~~~i 365 (435)
-|+||||+|||++..-+.+|.+||.+++.-+... -++.|+...++.++..+
T Consensus 225 vRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL~~L 276 (648)
T 2odr_B 225 FKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (648)
T ss_dssp EEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred eEEEEEeeEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 4899999999986521567999999999987763 14889999999998765
No 69
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=96.48 E-value=0.0041 Score=66.47 Aligned_cols=51 Identities=16% Similarity=0.254 Sum_probs=41.1
Q ss_pred ceeEEEecceecCcCCCCccccchhhheeeeccc-ccHHHHHHHHHHHHHHH
Q 013856 315 GRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDCLFVTI 365 (435)
Q Consensus 315 ~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~-~~~~d~m~~~e~l~~~i 365 (435)
-|+||||+|||++..-+.+|.+||.+++.-+... -++.|+...++.++..+
T Consensus 225 vRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL~~L 276 (665)
T 2odr_A 225 FKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (665)
T ss_dssp EEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred eEEEEEeeEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 4899999999986521567999999999987763 14889999999998765
No 70
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=96.46 E-value=0.0043 Score=66.45 Aligned_cols=51 Identities=16% Similarity=0.254 Sum_probs=41.1
Q ss_pred ceeEEEecceecCcCCCCccccchhhheeeeccc-ccHHHHHHHHHHHHHHH
Q 013856 315 GRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDCLFVTI 365 (435)
Q Consensus 315 ~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~-~~~~d~m~~~e~l~~~i 365 (435)
-|+||||+|||++...+.+|.+||.+++.-+... -++.|+...++.++..+
T Consensus 225 vRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vDF~DLKGvLE~LL~~L 276 (685)
T 2odr_D 225 FKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (685)
T ss_dssp EEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred eEEEEeccEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 4899999999986521567999999999987763 14889999999998765
No 71
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=96.36 E-value=0.0049 Score=66.13 Aligned_cols=51 Identities=16% Similarity=0.254 Sum_probs=41.1
Q ss_pred ceeEEEecceecCcCCCCccccchhhheeeeccc-ccHHHHHHHHHHHHHHH
Q 013856 315 GRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDCLFVTI 365 (435)
Q Consensus 315 ~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~-~~~~d~m~~~e~l~~~i 365 (435)
-|+||||+|||++..-+.+|.+||.+++.-+... -++.|+...++.++..+
T Consensus 225 vRLFEIGrVFR~D~~lDath~~EfhqLeGlv~G~~vDF~DLKGvLE~LL~~L 276 (701)
T 2odr_C 225 FKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (701)
T ss_dssp EEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred eEEEEEeeEEccCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 4899999999986521567999999999987763 14889999999998765
No 72
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=96.35 E-value=0.017 Score=48.41 Aligned_cols=97 Identities=16% Similarity=0.136 Sum_probs=67.6
Q ss_pred ceeEeccccCCCCCCEEEEEEEEeee---------ccCCCceEEEEEEeCCeEEEEEEeeCCCCCCHHHHHHHhcCCCCc
Q 013856 91 EWTEVGALNGSLKDQEVLIRGRVHTT---------RPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNES 161 (435)
Q Consensus 91 ~~~~i~~l~~~~~g~~V~v~GrV~~~---------R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~es 161 (435)
.++.|.+|.+... ..+|+|||.++ +..| ++.=++|.|..|.|+|++.. ...-+|...|..|+
T Consensus 3 ~~~~Is~L~p~~~--~w~I~~rV~~k~~~r~~~~~~~~g-~~~~~~L~De~G~I~at~~~------~~~~~f~~~l~eG~ 73 (114)
T 1ynx_A 3 PIFAIEQLSPYQN--VWTIKARVSYKGEIKTWHNQRGDG-KLFNVNFLDTSGEIRATAFN------DFATKFNEILQEGK 73 (114)
T ss_dssp CBCCGGGCCTTTC--CCEEEEEEEEEEEEEEEECSSCEE-EEEEEEEEETTEEEEEEECH------HHHHHHHHHSCSSS
T ss_pred ceEEHHHCCCCCC--ceEEEEEEEEeccceEEecCCCCc-eEEEEEEECCCCeEEEEECH------HHHHHHHhhcccCc
Confidence 4567778876432 47888888853 2235 67778899999999999863 23345677899999
Q ss_pred eEEEEEEEecC-CccCCCCceeEEEEEeEEEEeecC
Q 013856 162 IVDVIGVVSVP-DVEIKGATQQVEVQIKKLYCVSRA 196 (435)
Q Consensus 162 iV~V~G~v~~~-~~~~~~~t~~lEI~v~~i~vls~~ 196 (435)
++.|.|--.++ .+.-+...+.+||....-..+.+|
T Consensus 74 vy~Is~~~V~~a~~~y~~~~~~yei~f~~~T~I~~~ 109 (114)
T 1ynx_A 74 VYYVSKAKLQPAKPQFTNLTHPYELNLDRDTVIEEC 109 (114)
T ss_dssp EEEEESCEEEECCTTTSSSSSCEEEEECSSCEEEES
T ss_pred EEEECCcEEEECCCCcccCCCCEEEEECCCCEEEEC
Confidence 99999854433 322333346799999877777776
No 73
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=96.19 E-value=0.0087 Score=62.04 Aligned_cols=116 Identities=9% Similarity=0.038 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHH-h-hcCCeeeecCceeeecCCCCC--------ccee---------------ee--ccCCCceeec
Q 013856 247 IFRIQSQVGNIFRQF-L-LSENFVEIHTPKLIAGSSEGG--------SAVF---------------RL--DYKGQSACLA 299 (435)
Q Consensus 247 i~~~rs~i~~~~R~f-l-~~~gF~EV~TP~l~~~~~egg--------a~~F---------------~~--~~~~~~~~L~ 299 (435)
=..++..|.+++|+. + ...|+.||.||+|.+...-.+ ++-+ .+ .+++.++||+
T Consensus 61 G~~l~~~i~~~~~~~~~~~~~g~~ev~tp~l~~~~~~~~s~~g~~~r~d~~~e~~~~~g~~~eem~~~~~~~~~~~~~LR 140 (454)
T 1g5h_A 61 GVELRKNLASQWWSSMVVFREQVFAVDSLHQEPGSSQPRDSAFRLVSPESIREILQDREPSKEQLVAFLENLLKTSGKLR 140 (454)
T ss_dssp HHHHHHHHHHHHHHHHTTTCTTEEECCCCSEECCCCSSCCCCCEEECHHHHHHHHCC---CHHHHHHHHHHHHHHSCEEC
T ss_pred HHHHHHHHHHHHHHHHhhhcCCeEEEEcCccCChhhccccccCcccHHHHHHHHhhccCCCHHHHHHHHHhhcCcceeec
Confidence 367889999988876 4 589999999999987542111 1111 11 2345567888
Q ss_pred c--ChHH---HHhhhccC--CC-ceeEEEeccee---cCcCC--CCccccchhhheeeecccccHHHHHHHHHHHHHH
Q 013856 300 Q--SPQL---HKQMSICG--DF-GRVFETGPVFR---AEDSY--THRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVT 364 (435)
Q Consensus 300 ~--Spql---~lq~li~~--g~-~rVfeIgp~FR---~E~s~--t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~l~~~ 364 (435)
- +|-. |+..+-.. .+ =++++||+||| ||-+- ...=.-||||.|++. |++ .++..+..+.++..
T Consensus 141 Peta~g~~~~f~~~~~s~r~~LP~~~aqig~~fR~~~nE~s~~~Gl~R~REF~q~E~~~-F~~-pe~~~e~~~~~~~~ 216 (454)
T 1g5h_A 141 ATLLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQTPSSVTRVGEKTEASLVW-FTP-TRTSSQWLDFWLRH 216 (454)
T ss_dssp SCSHHHHHHTHHHHHHHTTTBSCEEEEEEEEEEEEEC---------CEEEEEEEEEEEE-EEC-HHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHhhhHhhcccCCCEEEEEeeeeccCCcccccCCCCccccCceehhheEE-EeC-HhhHHHHHHHHHHH
Confidence 4 2222 22222111 33 38999999999 69641 112357999999984 554 66666655555443
No 74
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=96.11 E-value=0.099 Score=43.17 Aligned_cols=88 Identities=15% Similarity=0.195 Sum_probs=66.0
Q ss_pred cceeEeccccCCCCCCEEEEEEEEeeec-------cCCC--ceEEEEEEeCCeEEEEEEeeCCCCCCHHHHHHHh-cCCC
Q 013856 90 REWTEVGALNGSLKDQEVLIRGRVHTTR-------PVGN--KLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVR-SLSN 159 (435)
Q Consensus 90 ~~~~~i~~l~~~~~g~~V~v~GrV~~~R-------~~G~--kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~-~l~~ 159 (435)
.++.+|++|.+ |..|.|.|+|.++- ..|+ ++.=+.|.|+++.|.+++=.+. +. .+.+
T Consensus 3 ~~~~~I~dL~~---~~~v~v~g~V~~~~~~r~~~~~~G~~~~v~~~~l~D~TG~IrvtlW~~~----------a~~~l~~ 69 (105)
T 3dm3_A 3 KDTYNIGELSP---GMTATFEGEVISALPIKEFKRADGSIGKLKSFIVRDETGSIRVTLWDNL----------TDIDVGR 69 (105)
T ss_dssp -CEECGGGCCS---SEEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEETTEEEEEEEEGGG----------GGSCCCT
T ss_pred ccceEHHHCCC---CCeEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCCcEEEEEECcc----------cccccCC
Confidence 35678888876 47899999998763 2342 4555888999999999875321 11 7999
Q ss_pred CceEEEEEEEecCCccCCCCceeEEEEEeEEEEeecC
Q 013856 160 ESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA 196 (435)
Q Consensus 160 esiV~V~G~v~~~~~~~~~~t~~lEI~v~~i~vls~~ 196 (435)
||+|.|.|.++... .+.+||++..-..+.+|
T Consensus 70 Gdvv~i~g~vk~~~------~g~~eL~~g~~~~i~~~ 100 (105)
T 3dm3_A 70 GDYVRVRGYIREGY------YGGLECTANYVEILKKG 100 (105)
T ss_dssp TCEEEEEEEEEECT------TSSEEEEEEEEEEEECC
T ss_pred CCEEEEEEEEEEcc------CCCEEEEeCCceEEEec
Confidence 99999999886531 25799999999999888
No 75
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=95.60 E-value=0.08 Score=45.30 Aligned_cols=79 Identities=14% Similarity=0.147 Sum_probs=56.5
Q ss_pred CEEEEEEEEeeeccCCCceEEEEEEeCCe-EEEEEEeeCCCCCCHHHHHHHhcCCCCceEEEEEEEecCCccCCCCceeE
Q 013856 105 QEVLIRGRVHTTRPVGNKLAFVVVRERVS-TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQV 183 (435)
Q Consensus 105 ~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~-~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~l 183 (435)
..|++-|+|.++......+. +.|.|++| .|.|..-...+..+ .-...+..|++|.|.|.++.- .+..
T Consensus 32 ~~V~iVG~V~~~~~~~~~~~-~~ldD~TG~~I~~~~W~~~~~~~----~~~~~~~~g~yVrV~G~l~~f-------~g~~ 99 (132)
T 3kdf_D 32 SQVTIVGIIRHAEKAPTNIV-YKIDDMTAAPMDVRQWVDTDDTS----SENTVVPPETYVKVAGHLRSF-------QNKK 99 (132)
T ss_dssp CEEEEEEEEEEEEECSSEEE-EEEECSSSSCEEEEEEC-------------CCCCTTCEEEEEEEEEEE-------TTEE
T ss_pred EEEEEEEEEEEEEEcCCeEE-EEEECCCCCEEEEEEEccCCCcc----cccccccCCCEEEEEEEEEeE-------CCEE
Confidence 46999999999998875644 68999999 99999865322111 123579999999999998642 1457
Q ss_pred EEEEeEEEEeec
Q 013856 184 EVQIKKLYCVSR 195 (435)
Q Consensus 184 EI~v~~i~vls~ 195 (435)
.|.+..|..+..
T Consensus 100 qi~~~~ir~v~d 111 (132)
T 3kdf_D 100 SLVAFKIMPLED 111 (132)
T ss_dssp EEEEEEEEECSS
T ss_pred EEEEEEEEEcCC
Confidence 788888877643
No 76
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=95.49 E-value=0.2 Score=40.52 Aligned_cols=83 Identities=13% Similarity=0.206 Sum_probs=59.2
Q ss_pred EeccccCCCCCCEEEEEEEEeeec-------cCCC--ceEEEEEEeCCeEEEEEEeeCCCCCCHHHHHHHh-cCCCCceE
Q 013856 94 EVGALNGSLKDQEVLIRGRVHTTR-------PVGN--KLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVR-SLSNESIV 163 (435)
Q Consensus 94 ~i~~l~~~~~g~~V~v~GrV~~~R-------~~G~--kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~-~l~~esiV 163 (435)
+|++|.+ |..|.|.|+|.++- ..|. ++.=+.|.|++++|-+.+-.+. +. .+..||+|
T Consensus 4 kI~dl~~---g~~v~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~DeTG~I~~tlW~~~----------~~~~i~~Gdvv 70 (97)
T 3e0e_A 4 KISELMP---NLSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLKDDTGSIRGTLWNEL----------ADFEVKKGDIA 70 (97)
T ss_dssp CGGGCCT---TEEEEEEEEEEEECCCEEEC----CCEEEEEEEEEETTEEEEEEEEGGG----------GGCCCCTTCEE
T ss_pred EHHHCCC---CCcEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCCcEEEEEECCc----------cccccCCCCEE
Confidence 4666654 57899999998863 2342 4555788999999999976421 12 69999999
Q ss_pred EEEEEEecCCccCCCCceeEEEEEeEEEEeecC
Q 013856 164 DVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA 196 (435)
Q Consensus 164 ~V~G~v~~~~~~~~~~t~~lEI~v~~i~vls~~ 196 (435)
.|.|.+..- .+.+||++.+.-.+.+|
T Consensus 71 ~i~g~v~~~-------~~~~el~~g~~~~i~k~ 96 (97)
T 3e0e_A 71 EVSGYVKQG-------YSGLEISVDNIGIIEKS 96 (97)
T ss_dssp EEEEEEEEC---------CEEEEEEEEEEEECC
T ss_pred EEEEEEEEc-------CCeEEEEECCCcEEEEC
Confidence 999987542 24799999988777654
No 77
>1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1
Probab=95.39 E-value=0.058 Score=45.05 Aligned_cols=81 Identities=20% Similarity=0.247 Sum_probs=59.2
Q ss_pred EeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEEeeCCCCCCHHHHHHH-hcCCCCceEEEEEEEecC
Q 013856 94 EVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFV-RSLSNESIVDVIGVVSVP 172 (435)
Q Consensus 94 ~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~-~~l~~esiV~V~G~v~~~ 172 (435)
.+.+......+..|+|.|.|...-..- + |.+||++++|++-++.. .|. ..+++++-|.|.|.|-+.
T Consensus 27 TV~~a~~~~Dd~~V~L~G~Iv~~~~~d-~---Y~F~D~TG~I~VeId~~---------~w~g~~v~p~~~Vri~GevDkd 93 (109)
T 1nnx_A 27 TVESAKSLRDDTWVTLRGNIVERISDD-L---YVFKDASGTINVDIDHK---------RWNGVTVTPKDTVEIQGEVDKD 93 (109)
T ss_dssp CHHHHTTSCSSEEEEEEEEEEEEEETT-E---EEEEETTEEEEEECCGG---------GSTTCCCCTTSCEEEEEEEEEE
T ss_pred eHHHHhhCcCCCeEEEEEEEEEEeCCC-e---EEEECCCccEEEEEChh---------hcCCcccCCCCEEEEEEEECCC
Confidence 344444556789999999998754322 3 78999999999998743 133 358999999999999742
Q ss_pred CccCCCCceeEEEEEeEEEEee
Q 013856 173 DVEIKGATQQVEVQIKKLYCVS 194 (435)
Q Consensus 173 ~~~~~~~t~~lEI~v~~i~vls 194 (435)
- ...||.|..|.+|.
T Consensus 94 ~-------~~~eIdV~~i~~~~ 108 (109)
T 1nnx_A 94 W-------NSVEIDVKQIRKVN 108 (109)
T ss_dssp T-------TEEEEEEEEEEEC-
T ss_pred C-------CceEEEEEEEEEcc
Confidence 2 24689999998874
No 78
>3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A*
Probab=95.29 E-value=0.16 Score=51.50 Aligned_cols=80 Identities=23% Similarity=0.359 Sum_probs=64.1
Q ss_pred CCCCCEEEEEEEEeee--ccCCCceEEEEEEeCCeEEEEEEeeCCCCCCHHHHHHHhcCCCCceEEEEEEEecCCccCCC
Q 013856 101 SLKDQEVLIRGRVHTT--RPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKG 178 (435)
Q Consensus 101 ~~~g~~V~v~GrV~~~--R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~ 178 (435)
-.....++|+|.|.+. +..| .=+|+.|.|+++.|.|++-.. ++.+-+.+..|.+||.|.|.|-++.
T Consensus 281 ~~~~~~~~v~G~V~~~P~~~~G-GHV~f~l~d~~~~i~c~ayep----tk~fr~~vr~L~~GD~V~v~G~v~~------- 348 (402)
T 3au7_A 281 LENYRSYRLRGRVTLEPYDIEG-GHVFFEIDTKFGSVKCAAFEP----TKQFRNVIRLLRKGDVVEVYGSMKK------- 348 (402)
T ss_dssp CCTTCEEEEEEEEEEEEEEETT-TEEEEEEEETTEEEEEEECGG----GTTHHHHHTTCCTTCEEEEEEEEET-------
T ss_pred cccCceEEEEEEEecCcEeccC-ceEEEEEEcCCCEEEEEEEcc----chHHHHHHhcCCCCCEEEEEEeecC-------
Confidence 3456899999999987 4455 447899999999999999753 3455667789999999999998753
Q ss_pred CceeEEEEEeEEEEeecC
Q 013856 179 ATQQVEVQIKKLYCVSRA 196 (435)
Q Consensus 179 ~t~~lEI~v~~i~vls~~ 196 (435)
+ .|.++++.+++-+
T Consensus 349 --g--tLnvEk~~v~~l~ 362 (402)
T 3au7_A 349 --D--TINLEKIQIVELA 362 (402)
T ss_dssp --T--EEEEEEEEEEECC
T ss_pred --C--EEEEEEEEEcccC
Confidence 2 6999999999764
No 79
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis}
Probab=95.00 E-value=0.077 Score=49.13 Aligned_cols=114 Identities=18% Similarity=0.204 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhhcCCeeeecCceeeecCC-C-----CCcceeee-ccCC-CceeeccChHHHHhhhccC----CCc--ee
Q 013856 252 SQVGNIFRQFLLSENFVEIHTPKLIAGSS-E-----GGSAVFRL-DYKG-QSACLAQSPQLHKQMSICG----DFG--RV 317 (435)
Q Consensus 252 s~i~~~~R~fl~~~gF~EV~TP~l~~~~~-e-----gga~~F~~-~~~~-~~~~L~~Spql~lq~li~~----g~~--rV 317 (435)
..+.+.+|+.|...||.||-|-.+++... + .......+ |-.. .--.||+|-=--+=..+.- +.. |+
T Consensus 7 ~~~~~~ir~~l~~~G~~Evitysf~~~~~~~~~~~~~~~~~v~l~NPls~e~~vmRtsLlpgLL~~~~~N~~r~~~~v~l 86 (213)
T 3ig2_A 7 NKLQNLVAEQLVGCGFNEILNNSLTRAAYYDGLESYPSKNLVMLLNPLSADLNCMRQTLLFGGLESIAHNANRKNADLKF 86 (213)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEECGGGGTTCSSSCGGGCEEBSSGGGCSCCEECSCSHHHHHHHHHHC------CCEE
T ss_pred HHHHHHHHHHHHHCCCeEEeccccCCHHHHHhhcccCcCCeEEEeCCcchhHHHHHHHhHHHHHHHHHHHhcCCCCCeeE
Confidence 35678899999999999999999987431 1 11223333 2222 3347887743322223322 232 89
Q ss_pred EEEecceecCcCCC-----Cccccchhhheeeeccc------------ccHHHHHHHHHHHHHHH
Q 013856 318 FETGPVFRAEDSYT-----HRHLCEFTGLDVEMEIK------------KHYSEVMDIVDCLFVTI 365 (435)
Q Consensus 318 feIgp~FR~E~s~t-----~rHl~EFt~lE~e~a~~------------~~~~d~m~~~e~l~~~i 365 (435)
||||+||+.++... ..+..|..+|-.-+... -++.|+...+|.++..+
T Consensus 87 FEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~dlKg~ve~ll~~l 151 (213)
T 3ig2_A 87 FEFGNCYHFDAEKKNPEKVLAPYSEDYHLGLWVTGKMVSNSWAHADENTSVYELKAYVENIFKRL 151 (213)
T ss_dssp EEEEEEEEECC----------CEEEEEEEEEEEEEEECCSCC----CHHHHHHHHHHHHHHHHHT
T ss_pred EEeeeEEecCcccccccccccccchhHEEEEEEECCCccccCCCCCCCcCHHHHHHHHHHHHHHh
Confidence 99999999765211 12345777777655441 13667777777776554
No 80
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=94.98 E-value=0.057 Score=57.66 Aligned_cols=112 Identities=12% Similarity=0.112 Sum_probs=70.5
Q ss_pred HHHHHHHHHhhcCCeeeecCceeeecC--------CCCCcceeee-ccCCC-ceeeccChHHHHhhhccC----C-Ccee
Q 013856 253 QVGNIFRQFLLSENFVEIHTPKLIAGS--------SEGGSAVFRL-DYKGQ-SACLAQSPQLHKQMSICG----D-FGRV 317 (435)
Q Consensus 253 ~i~~~~R~fl~~~gF~EV~TP~l~~~~--------~egga~~F~~-~~~~~-~~~L~~Spql~lq~li~~----g-~~rV 317 (435)
.+.+.+|+.|...||.||.|+.+++.. ..++...+.+ |-... --.||+|-=--+=..+.. + -=|+
T Consensus 395 ~~~~~ir~~l~~~Gf~Evitysf~s~~~~~~~l~~~~~~~~~v~L~NPis~e~svmRtsLlpgLL~~l~~N~~~~~~vrl 474 (589)
T 3l4g_B 395 KLTELLRHDMAAAGFTEALTFALCSQEDIADKLGVDISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRKMPLPLKL 474 (589)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEECHHHHTGGGTSCTTSSCCCBBSSCSSGGGSEECSCSHHHHHHHHHHTTTSCSCEEE
T ss_pred HHHHHHHHHHHHCCCEEEecCcccCHHHHHHHhCCCCCCCCeEEEcCCCchhHhHHHHHHHHHHHHHHHHHhcCCCceEE
Confidence 457789999999999999999998642 1122234444 22222 246776632222112221 1 2389
Q ss_pred EEEecceecCcCCCCccccchhhheeeeccc-ccHHHHHHHHHHHHHHH
Q 013856 318 FETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDCLFVTI 365 (435)
Q Consensus 318 feIgp~FR~E~s~t~rHl~EFt~lE~e~a~~-~~~~d~m~~~e~l~~~i 365 (435)
||+|+|||.+.. +.+|.+|+.++..-+... .++.++--.++.++..+
T Consensus 475 FEiG~Vf~~d~~-~~~~~~e~~~la~~~~g~~~~f~~lkg~le~ll~~l 522 (589)
T 3l4g_B 475 FEISDIVIKDSN-TDVGAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQLL 522 (589)
T ss_dssp EEEEEEEEECTT-STTSEEEEEEEEEEEESSSCCHHHHHHHHHHHHHHT
T ss_pred EEeeeEEecCCc-cccCCccccEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 999999998763 457888999998765432 23667766666665543
No 81
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=94.84 E-value=0.19 Score=43.13 Aligned_cols=79 Identities=11% Similarity=0.098 Sum_probs=56.3
Q ss_pred CEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEEeeCCCCCCHHHHHHHhcCCCCceEEEEEEEecCCccCCCCceeEE
Q 013856 105 QEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVE 184 (435)
Q Consensus 105 ~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lE 184 (435)
..|++-|+|.+++.....+. +.|.|++|.|.|..=...+.. ...-...+..|++|.|.|.+..- .+...
T Consensus 37 ~~V~iVG~V~~~~~~~~~~~-~~ldD~TG~I~~~~W~~~~~~---~~~~~~~~~~g~yVrV~G~v~~f-------~g~~q 105 (136)
T 4gop_B 37 GQLTFVAVVRNISRNATNVA-YSVEDGTGQIEVRQWLDSSSD---DSSKASEIRNNVYVRVLGTLKSF-------QNRRS 105 (136)
T ss_dssp CEEEEEEEEEEEEECSSEEE-EEEECSSCEEEEEEECC-----------CCSCCTTCEEEEEEEEEEE-------TTEEE
T ss_pred EEEEEEEEEEEEEecCCeEE-EEEECCCCCEEEEEecccCCc---ccccccccCCCCEEEEEEEEEEe-------CCEEE
Confidence 47999999999998775544 688999999999876432210 01124579999999999998642 14577
Q ss_pred EEEeEEEEee
Q 013856 185 VQIKKLYCVS 194 (435)
Q Consensus 185 I~v~~i~vls 194 (435)
|.+..|..+.
T Consensus 106 i~~~~ir~v~ 115 (136)
T 4gop_B 106 ISSGHMRPVI 115 (136)
T ss_dssp EEESEEEECS
T ss_pred EEEEEEEECC
Confidence 8888887764
No 82
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*
Probab=94.79 E-value=0.07 Score=58.99 Aligned_cols=112 Identities=16% Similarity=0.068 Sum_probs=72.4
Q ss_pred HHHHHHHHHHhhcCCeeeecCceeeecCCC----CCcc-eeee-ccCC-CceeeccChHHHHhhhccC----CC--ceeE
Q 013856 252 SQVGNIFRQFLLSENFVEIHTPKLIAGSSE----GGSA-VFRL-DYKG-QSACLAQSPQLHKQMSICG----DF--GRVF 318 (435)
Q Consensus 252 s~i~~~~R~fl~~~gF~EV~TP~l~~~~~e----gga~-~F~~-~~~~-~~~~L~~Spql~lq~li~~----g~--~rVf 318 (435)
..+.+.+|++|...||.|+.|..+++.... +... .+.+ |... ....||+|-=--+=..+.. +. =|+|
T Consensus 496 ~~~~~~ir~~L~~~Gf~Evitysfvs~~~~~~l~~~~~~~v~L~NPis~e~svLRtsLlpgLL~~l~~N~~r~~~~vrlF 575 (795)
T 2rhq_B 496 QHKTRTLKETLEGAGLNQAITYSLVSKDHAKDFALQERPTISLLMPMSEAHATLRQSLLPHLIEATAYNVARKNKDVRLY 575 (795)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEECTTTTTTTCSSCCCCEECSSCSCTTSSEECSCSHHHHHHHHHHHHHTTCCCEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEecCCccCHHHHHhhCCCCCceEEEcCCCchhhhhhhhccHHHHHHHHHHHhcCCCCCeEEE
Confidence 456778999999999999999999865311 1223 2444 2222 2346775542222222221 22 3899
Q ss_pred EEecceecCcCCCCccccchhhheeeeccc------------ccHHHHHHHHHHHHHHH
Q 013856 319 ETGPVFRAEDSYTHRHLCEFTGLDVEMEIK------------KHYSEVMDIVDCLFVTI 365 (435)
Q Consensus 319 eIgp~FR~E~s~t~rHl~EFt~lE~e~a~~------------~~~~d~m~~~e~l~~~i 365 (435)
|||+|||.+.. +..| +||.++..-+... -++.|+...++.++..+
T Consensus 576 EiG~Vf~~d~~-~~~~-~e~~~la~l~~G~~~~~~w~~~~~~~dF~dlKg~le~ll~~l 632 (795)
T 2rhq_B 576 EIGRVFFGNGE-GELP-DEVEYLSGILTGEYVVNAWQGKKEEIDFFIAKGVVDRVAEKL 632 (795)
T ss_dssp EEEEEEECCCT-TSCC-EEEEEEEEEEESEEEEEGGGTEEEECCHHHHHHHHHHHHHHH
T ss_pred EEeeEEecCCc-ccCc-chhhEEEEEEEeccccccccCCCCCCCHHHHHHHHHHHHHHc
Confidence 99999997542 2256 8999998755542 24889999999998865
No 83
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=93.70 E-value=0.42 Score=39.92 Aligned_cols=85 Identities=19% Similarity=0.187 Sum_probs=59.5
Q ss_pred eEeccccCCCCCCEEEEEEEEeee---c----cCCC-ceEEEEEEeCCeEEEEEEeeCCCCCCHHHHHHHhcCCCCceEE
Q 013856 93 TEVGALNGSLKDQEVLIRGRVHTT---R----PVGN-KLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVD 164 (435)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~---R----~~G~-kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~ 164 (435)
..|.+|.+ ....|.+.|+|.++ | +.|+ ...=+.|.|.+++|.+.+=... +..+..|++|.
T Consensus 3 ~~I~dL~~--~~~~v~~~~~V~~~~~~~~~~~k~G~~~~~~~~l~D~TG~I~~tlW~~~----------~~~~~~G~vv~ 70 (119)
T 1o7i_A 3 EKVGNLKP--NMESVNVTVRVLEASEARQIQTKNGVRTISEAIVGDETGRVKLTLWGKH----------AGSIKEGQVVK 70 (119)
T ss_dssp CCGGGCCT--TCSSEEEEEEEEEECCCEEECCTTCCEEEEEEEEEETTEEEEEEEEGGG----------TTCCCTTCEEE
T ss_pred EEHHHCcC--CCCcEEEEEEEEECCCCeeEEecCCCEEEEEEEEEeCCCEEEEEEECCh----------hhcCCCCCEEE
Confidence 45667754 12368999999876 4 3453 5666788899999999886431 13589999999
Q ss_pred EE-EEEecCCccCCCCceeEEEEEeEEEEeecC
Q 013856 165 VI-GVVSVPDVEIKGATQQVEVQIKKLYCVSRA 196 (435)
Q Consensus 165 V~-G~v~~~~~~~~~~t~~lEI~v~~i~vls~~ 196 (435)
|. |.+..- .|.++|.+.+...+.++
T Consensus 71 i~~g~v~~~-------~g~~qL~i~~~~~i~~~ 96 (119)
T 1o7i_A 71 IENAWTTAF-------KGQVQLNAGSKTKIAEA 96 (119)
T ss_dssp EEEEEEEEE-------TTEEEEEECTTCEEEEC
T ss_pred EEeEEEEEe-------CCEEEEEECCCEEEEEc
Confidence 99 776531 24689999886655555
No 84
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis}
Probab=93.57 E-value=0.19 Score=46.47 Aligned_cols=114 Identities=18% Similarity=0.191 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhhcCCeeeecCceeeecCC-C-----CCcceeee-ccCC-CceeeccChHHHHhhhc----cCCCc--ee
Q 013856 252 SQVGNIFRQFLLSENFVEIHTPKLIAGSS-E-----GGSAVFRL-DYKG-QSACLAQSPQLHKQMSI----CGDFG--RV 317 (435)
Q Consensus 252 s~i~~~~R~fl~~~gF~EV~TP~l~~~~~-e-----gga~~F~~-~~~~-~~~~L~~Spql~lq~li----~~g~~--rV 317 (435)
..+.+.+|+.|...||.||-|-.+++... + .......+ |-.. .--.||+|-=--+=..+ .-+.. |+
T Consensus 7 ~~~~~~ir~~L~~~G~~Evitysf~s~~~~~~~~~~~~~~~v~l~NPls~e~~vmRtsLlpgLL~~~~~N~~r~~~~~~l 86 (213)
T 3ica_A 7 YKWQTVVSEQLVGAGFNEILNNSLTAGSYYEGLKSHPREMAVELMNPLSQELNCMRQTLLFGGLETLSHNLRRKHLSLYL 86 (213)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEEEGGGGTTCSSSCGGGCCBCSSBSCSSEEEECSSSHHHHHHHHHHHHTTTCSEEEE
T ss_pred HHHHHHHHHHHHHCCCceeeeccCCCHHHHhhhcccCcCCeEEecCCccHHHHHHHHHhHHHHHHHHHHHHcCCCCCeeE
Confidence 35678899999999999999999987531 1 11122333 3333 34578877433222122 23443 89
Q ss_pred EEEecceecCcCC-----CCccccchhhheeeeccc------------ccHHHHHHHHHHHHHHH
Q 013856 318 FETGPVFRAEDSY-----THRHLCEFTGLDVEMEIK------------KHYSEVMDIVDCLFVTI 365 (435)
Q Consensus 318 feIgp~FR~E~s~-----t~rHl~EFt~lE~e~a~~------------~~~~d~m~~~e~l~~~i 365 (435)
||||+||+.++.. ...+..|..+|-.-+... .++.|+...+|.++..+
T Consensus 87 FEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~d~Kg~ve~ll~~l 151 (213)
T 3ica_A 87 FEWGKCYRFHAAKRTDETPLAAYAEDDRLGIWICGQRVHNSWAHPEEPTSVFELKAVVEQVLCRV 151 (213)
T ss_dssp EEEEEEEEEECCCC--CCSSCEEEEEEEEEEEEEEBCCC-----CCCBCCHHHHHHHHHHHHHHT
T ss_pred EEeeeEEecCCccccccccccccchhhEEEEEEeCCCCcccCCCCCCCcCHHHHHHHHHHHHHHh
Confidence 9999999975421 113456777776655441 24788888888877654
No 85
>1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A
Probab=93.32 E-value=0.25 Score=46.30 Aligned_cols=98 Identities=12% Similarity=0.096 Sum_probs=66.9
Q ss_pred cceeEeccccCCCCCCEEEEEEEEeee---c------cCCCceEEEEEEeCCeEEEEEEeeCCCCCCHHHHHHHhcCCCC
Q 013856 90 REWTEVGALNGSLKDQEVLIRGRVHTT---R------PVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNE 160 (435)
Q Consensus 90 ~~~~~i~~l~~~~~g~~V~v~GrV~~~---R------~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~e 160 (435)
..++.|.+|.+.. ..++|+|||.++ | ..| ++.-++|.|..|.|++++... ..-+|...|..|
T Consensus 6 ~~~~~I~~L~p~~--~~w~I~~rV~~k~~~r~~~~~~~~g-~~~~~~L~De~G~I~at~~~~------~~~~~~~~l~~G 76 (246)
T 1jmc_A 6 SKVVPIASLTPYQ--SKWTICARVTNKSQIRTWSNSRGEG-KLFSLELVDESGEIRATAFNE------QVDKFFPLIEVN 76 (246)
T ss_dssp -CBCCGGGCCTTC--CCCEEEEEEEEECCCEEEECSSCEE-EEEEEEEECSSCEEEEEEEHH------HHHHHGGGCCTT
T ss_pred cceEEHHHCCCCC--CceEEEEEEEEecccceeeCCCCCc-eEEEEEEECCCCeEEEEEChH------HHHHhhhhcccC
Confidence 4567888887643 357899999865 2 234 566678999988999998742 233566789999
Q ss_pred ceEEEEEEEecCC-ccCCCCceeEEEEEeEEEEeecC
Q 013856 161 SIVDVIGVVSVPD-VEIKGATQQVEVQIKKLYCVSRA 196 (435)
Q Consensus 161 siV~V~G~v~~~~-~~~~~~t~~lEI~v~~i~vls~~ 196 (435)
+++.|.+...++. ..-+...+.+||....-..+.+|
T Consensus 77 ~vy~i~~~~v~~~~~~y~~~~~~~ei~~~~~T~I~~~ 113 (246)
T 1jmc_A 77 KVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPC 113 (246)
T ss_dssp CEEEEECCEEEECCGGGCCCCCSEEEECCTTCEEEEC
T ss_pred CEEEECCCEEEEcccCcccCCCCEEEEEcCCcEEEEc
Confidence 9999998544432 22223346799999876666666
No 86
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=92.18 E-value=0.89 Score=37.47 Aligned_cols=87 Identities=10% Similarity=0.056 Sum_probs=62.0
Q ss_pred eeEeccccCCCCCCEEEEEEEEeeecc--CCCceEEEEEEeCCeEEEEEEeeCCCCCCHHHHHHHhcCCCCceEEEE-EE
Q 013856 92 WTEVGALNGSLKDQEVLIRGRVHTTRP--VGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVI-GV 168 (435)
Q Consensus 92 ~~~i~~l~~~~~g~~V~v~GrV~~~R~--~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~-G~ 168 (435)
+.+|.+|.+ .+..|.+.|+|.++-. .|+....+.|.|.+++|-+++=.... +..+..|++|.|. |.
T Consensus 5 ~~kI~dl~~--~~~~v~v~~~V~~~~~~~~~~~~~~~~l~DeTG~I~~t~W~~~~---------~~~~~~G~~V~i~n~~ 73 (109)
T 2kbn_A 5 LTKIVDIVE--NGQWANLKAKVIQLWENTHESISQVGLLGDETGIIKFTIWKNAE---------LPLLEQGESYLLRSVV 73 (109)
T ss_dssp BCCTTTCCS--TTCEEEEEEEEEEEEECCCSSEEEEEEEECTTCCEEEEEEGGGC---------CCCCCTTCEEEEEEEE
T ss_pred ceEHHHCCC--CCCcEEEEEEEEEeEcCCCCeEEEEEEEECCCCeEEEEEECccc---------ccccCCCCEEEEEEEE
Confidence 456777764 3678999999988643 34455568899999999999864221 2478999999999 56
Q ss_pred EecCCccCCCCceeEEEEEeEEEEeecC
Q 013856 169 VSVPDVEIKGATQQVEVQIKKLYCVSRA 196 (435)
Q Consensus 169 v~~~~~~~~~~t~~lEI~v~~i~vls~~ 196 (435)
+..= .|.++|.+.+...+.+.
T Consensus 74 v~~~-------~G~~~L~v~~~~~I~~~ 94 (109)
T 2kbn_A 74 VGEY-------NDRFQVQVNKNSSIEKL 94 (109)
T ss_dssp EEEE-------TTEEEEEECSSSEEEEC
T ss_pred EEEE-------CCEEEEEECCceEEEEC
Confidence 5431 24689999877666554
No 87
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=90.99 E-value=1.1 Score=42.80 Aligned_cols=79 Identities=14% Similarity=0.151 Sum_probs=55.8
Q ss_pred CEEEEEEEEeeeccCCCceEEEEEEeCCe-EEEEEEeeCCCCCCHHHHHHHhcCCCCceEEEEEEEecCCccCCCCceeE
Q 013856 105 QEVLIRGRVHTTRPVGNKLAFVVVRERVS-TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQV 183 (435)
Q Consensus 105 ~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~-~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~l 183 (435)
..|++-|+|.++...+..+ -+.|.|+++ .|-|.+-....... .-...+..|++|.|.|.|..-. +..
T Consensus 72 ~~V~ivG~V~~i~~~~~~~-~~~L~D~TG~~I~~k~W~~~~~~~----~~~~~~~~G~yVrV~G~v~~f~-------g~~ 139 (270)
T 2pi2_A 72 SQVTIVGIIRHAEKAPTNI-VYKIDDMTAAPMDVRQWVDTDDTS----SENTVVPPETYVKVAGHLRSFQ-------NKK 139 (270)
T ss_dssp SEEEEEEEEEEEEECSSEE-EEEEECSSSSCEEEEEECC-----------CCCCCTTCEEEEEEEEEEET-------TEE
T ss_pred EEEEEEEEEEEEEeccceE-EEEEECCCCCEEEEEEEcCcCccc----chhhcCCCCCEEEEEEEEEecC-------Cee
Confidence 3699999999998776454 468999999 89999864321100 0135699999999999986421 357
Q ss_pred EEEEeEEEEeec
Q 013856 184 EVQIKKLYCVSR 195 (435)
Q Consensus 184 EI~v~~i~vls~ 195 (435)
.|.+..|..+..
T Consensus 140 qi~i~~ir~v~d 151 (270)
T 2pi2_A 140 SLVAFKIMPLED 151 (270)
T ss_dssp EEEEEEEEECSC
T ss_pred EEEEEEEEecCC
Confidence 788888877654
No 88
>3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A
Probab=90.87 E-value=1.2 Score=37.68 Aligned_cols=79 Identities=19% Similarity=0.300 Sum_probs=52.2
Q ss_pred eeEeccccCCCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEEeeCCCCCCHHHHHHHhcCCCCceEEEEEEEec
Q 013856 92 WTEVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSV 171 (435)
Q Consensus 92 ~~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~ 171 (435)
++.-+-|. .+.|+.|++-|+|.+++..|+ .|+.-..+++.|+|.++...+ ..+ +.+|.|.|+|..
T Consensus 11 RVn~s~L~-~fvgk~VrivGkV~~~~~~g~--~~~l~s~Dg~~Vtv~l~~p~~----------~~l--~~~vEViG~V~~ 75 (121)
T 3kdf_A 11 RINAGMLA-QFIDKPVCFVGRLEKIHPTGK--MFILSDGEGKNGTIELMEPLD----------EEI--SGIVEVVGRVTA 75 (121)
T ss_dssp EECGGGGG-GGTTCEEEEEEEEEEECTTSS--EEEEECTTSCEEEEECSSCCS----------SCC--CSEEEEEEEECT
T ss_pred eECHHHHH-hhCCCeEEEEEEEEEEcCCCC--EEEEEeCCCCEEEEEeCCCCC----------ccc--CcEEEEEEEECC
Confidence 33333343 688999999999999998883 343333457788888874211 122 459999999863
Q ss_pred CCccCCCCceeEEEEEeEEEEeec
Q 013856 172 PDVEIKGATQQVEVQIKKLYCVSR 195 (435)
Q Consensus 172 ~~~~~~~~t~~lEI~v~~i~vls~ 195 (435)
..+|.+..+..++.
T Consensus 76 ----------~~tI~~~~~~~fg~ 89 (121)
T 3kdf_A 76 ----------KATILCTSYVQFKE 89 (121)
T ss_dssp ----------TSCEEEEEEEECCC
T ss_pred ----------CCeEEEEEEEecCC
Confidence 23467766655554
No 89
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A
Probab=90.27 E-value=3.6 Score=33.38 Aligned_cols=53 Identities=11% Similarity=0.234 Sum_probs=33.3
Q ss_pred EEEEEeeCCCCCCHHHHHHHhcCCCCceEEEEEEEecCCccCCCCceeEEEEEeEEEEeec
Q 013856 135 VQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSR 195 (435)
Q Consensus 135 iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lEI~v~~i~vls~ 195 (435)
++|++-... - + ...+.|++|+.|.|+|.+... ....|.+. ++|++.+|+.|+.
T Consensus 50 ~~vv~~g~~---A-e--~~~~~l~KG~~V~V~G~L~~~-~~~~G~~r-~~v~~~~i~~l~~ 102 (104)
T 1txy_A 50 MPVIVSGHE---N-Q--AITHSITVGSRITVQGFISCH-KAKNGLSK-MVLHAEQIELIDS 102 (104)
T ss_dssp EEEEEESST---T-H--HHHTTCCTTCEEEEEEEEEC---------C-CEEEEEEEEEC--
T ss_pred EEEEEEhHH---H-H--HHHhhCCCCCEEEEEEEEEec-cCCCCCEE-EEEEEEEEEECcC
Confidence 888887432 1 1 234569999999999999854 22223233 8999999998853
No 90
>3kf8_A Protein STN1; OB fold; 2.40A {Candida tropicalis mya-3404}
Probab=90.14 E-value=1.8 Score=40.30 Aligned_cols=89 Identities=11% Similarity=0.147 Sum_probs=55.7
Q ss_pred CEEEEEEEEeeeccCCC-------ceEEEEEEeCCe---EEEEEEeeCCCCCCHHHHHHHhcCCCCceEEEEEEEecCCc
Q 013856 105 QEVLIRGRVHTTRPVGN-------KLAFVVVRERVS---TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDV 174 (435)
Q Consensus 105 ~~V~v~GrV~~~R~~G~-------kl~Fl~Lrd~~~---~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~ 174 (435)
+.|.|.|.|...+-.-. ...|+.|-|.++ +|.|.++.... .+-. .+ ......|.+|.|+|.+..-..
T Consensus 86 ~~V~IvG~VVg~~~k~~r~~~~~~~~~~l~IDDsSG~~s~i~~k~~~~~~-~~~g-l~-l~~~~~G~iV~VkG~i~~~r~ 162 (220)
T 3kf8_A 86 NQINIFGKIVYEQYKEKEFNGVEESYVILVISDFIGIDSKIRVRLSQEQF-KEVG-LT-LDKKNYGKIVELEGEIYNWYD 162 (220)
T ss_dssp CEEEEEEEEEEEEEECCBCSSCBCCEEEEEEECCCSSSCEEEEEEEHHHH-HTTT-CC-TTSCCTTCEEEEEEEEEECCC
T ss_pred EEEEEEEEEEEEEEEeccccccccceEEEEEeCCCCCCceEEEEecHHHh-hccC-cc-ccccCCCeEEEEEEEEEeecc
Confidence 57999999999875431 347888989876 58877664210 0000 00 112457999999999974211
Q ss_pred cCC-CCceeEEEEEeEEEEeecC
Q 013856 175 EIK-GATQQVEVQIKKLYCVSRA 196 (435)
Q Consensus 175 ~~~-~~t~~lEI~v~~i~vls~~ 196 (435)
... +..-.-||.++++.+++..
T Consensus 163 ~~~~~~~~~rei~ve~i~vl~~~ 185 (220)
T 3kf8_A 163 SINVSKKPDRELKVSKITVLSHR 185 (220)
T ss_dssp STTTTSCCCEEEEEEEEEEEESS
T ss_pred ccccccccceEEEEEEEEEeccC
Confidence 110 1111469999999999754
No 91
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=89.64 E-value=0.51 Score=54.29 Aligned_cols=79 Identities=13% Similarity=0.188 Sum_probs=46.7
Q ss_pred CCCCEEEEEEEEeeecc----CCCceEEEEEEeCCeEEEEEEeeCCCCCCHHHHHHHhcCCCCceEEEEEEEecCCccCC
Q 013856 102 LKDQEVLIRGRVHTTRP----VGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIK 177 (435)
Q Consensus 102 ~~g~~V~v~GrV~~~R~----~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~ 177 (435)
..|+.|+|+|-|.+++. .|+.++|+.|.|.++.+.+++..... -++...|..+.+|.|+|.|...+
T Consensus 1040 ~~g~~v~v~G~v~~~~~~~Tk~G~~maf~tleD~tg~~evvvf~~~~------~~~~~~l~~~~~~~v~G~v~~~~---- 1109 (1220)
T 2hpi_A 1040 PGKPKVLLSGMVEEVVRKPTRSGGMMARFTLSDETGALEVVVFGRAY------EGVSPKLKEDIPLLVLAEVEKGE---- 1109 (1220)
T ss_dssp SSSCEEEEEEEECCC------------CEEEEETTEEEEEC-------------------CTTCEEEEEEEEC-------
T ss_pred cCCCeEEEEEEEEEEEEeecCCCCeEEEEEEEECCCCEEEEEcHHHH------HHHHHHhccCCEEEEEEEEEECC----
Confidence 46889999999998774 45679999999999999999986422 23445689999999999996421
Q ss_pred CCceeEEEEEeEEEEee
Q 013856 178 GATQQVEVQIKKLYCVS 194 (435)
Q Consensus 178 ~~t~~lEI~v~~i~vls 194 (435)
.+.|.+.++.-++
T Consensus 1110 ----~~~l~~~~i~~l~ 1122 (1220)
T 2hpi_A 1110 ----ELRVLAQAVWTLE 1122 (1220)
T ss_dssp ------CEEEEEEEEHH
T ss_pred ----CcEEEEeeeecHH
Confidence 2567777777554
No 92
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=89.31 E-value=2.6 Score=34.48 Aligned_cols=88 Identities=10% Similarity=0.152 Sum_probs=60.1
Q ss_pred eeEeccccCCCCCCEEEEEEEEeee-----ccCCC--ceEEEEEEeCCeEEEEEEeeCCCCCCHHHHHHHhcCCCCceEE
Q 013856 92 WTEVGALNGSLKDQEVLIRGRVHTT-----RPVGN--KLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVD 164 (435)
Q Consensus 92 ~~~i~~l~~~~~g~~V~v~GrV~~~-----R~~G~--kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~ 164 (435)
+.+|++|.+. ...|.+.|+|.++ +..|+ .++=+.|-|.+++|.+.+=.. .+..|++|.
T Consensus 3 ~~kI~dl~pg--~~~v~v~~~V~~~~~~~~~k~G~~~~v~~~~l~DeTG~I~~tlW~~-------------~l~~Gdvv~ 67 (106)
T 2k75_A 3 LVKIRDVSLS--TPYVSVIGKITGIHKKEYESDGTTKSVYQGYIEDDTARIRISSFGK-------------QLQDSDVVR 67 (106)
T ss_dssp BCCSTTCCTT--CSEEEEEEEEEEEEEEEEEETTEEEEEEEEEEECSSCEEEEEEESS-------------CCCTTEEEE
T ss_pred cEEHHHcCCC--CceEEEEEEEEEccccccccCCCeeEEEEEEEEcCCCeEEEEEEcC-------------ccCCCCEEE
Confidence 4567777542 3457888888764 23453 256678889999998887632 189999999
Q ss_pred EE-EEEecCCccCCCCceeEEEEEeEEEEeecC-CCCCc
Q 013856 165 VI-GVVSVPDVEIKGATQQVEVQIKKLYCVSRA-AKTPI 201 (435)
Q Consensus 165 V~-G~v~~~~~~~~~~t~~lEI~v~~i~vls~~-~~lP~ 201 (435)
|. |.+..- .+.++|.+.+.-.+.+. ..-|+
T Consensus 68 i~ng~v~~~-------~g~~~L~v~~~~~I~~~~~~~~~ 99 (106)
T 2k75_A 68 IDNARVAQF-------NGYLSLSVGDSSRIESVNVNIPL 99 (106)
T ss_dssp EEEEEEEEE-------TTEEEEEECTTSEEEECCSCCCC
T ss_pred EEeeEEeEE-------CCEEEEEECCcEEEEECCCCCcc
Confidence 99 666421 25699999887777766 54454
No 93
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=89.12 E-value=0.65 Score=47.52 Aligned_cols=96 Identities=14% Similarity=0.129 Sum_probs=64.4
Q ss_pred eeEeccccCCCCCCEEEEEEEEeee---c------cCCCceEEEEEEeCCeEEEEEEeeCCCCCCHHHHHHHhcCCCCce
Q 013856 92 WTEVGALNGSLKDQEVLIRGRVHTT---R------PVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESI 162 (435)
Q Consensus 92 ~~~i~~l~~~~~g~~V~v~GrV~~~---R------~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esi 162 (435)
++.|.+|.+.. ..++|+|||.++ | ..| ++.-++|.|.+|.|++++... ..-+|...|..|++
T Consensus 3 ~~~I~~L~p~~--~~w~I~~rV~~k~~ir~~~~~~~~g-~~~~~~L~De~G~I~at~~~~------~~~~f~~~l~eG~v 73 (444)
T 4gop_C 3 IYPIEGLSPYQ--NRWTIKARVTSKSDIRHWSNQRGEG-KLFSVNLLDDSGEIKATGFND------AVDRFYPLLQENHV 73 (444)
T ss_dssp CCCSTTCCTTC--CSCEEEEECCEECCCEEEECSSCEE-EEEEEEEECSSCEEEEEEETH------HHHHHTTTCCTTCE
T ss_pred ceeHHHCCCCC--cceEEEEEEEEccCcceecCCCCCc-eEEEEEEEcCCCEEEEEEeHH------HHHHHHHheecCCE
Confidence 45677776643 357899999853 3 224 677789999999999998732 23456678999999
Q ss_pred EEEEEEEecC-CccCCCCceeEEEEEeEEEEeecC
Q 013856 163 VDVIGVVSVP-DVEIKGATQQVEVQIKKLYCVSRA 196 (435)
Q Consensus 163 V~V~G~v~~~-~~~~~~~t~~lEI~v~~i~vls~~ 196 (435)
+.|.+...++ ...-+...+.+||....-..+.+|
T Consensus 74 y~Is~~~V~~~~~~y~~~~~~~ei~~~~~T~V~~~ 108 (444)
T 4gop_C 74 YLISKARVNIAKKQFSNLQNEYEITFENSTEIEEC 108 (444)
T ss_dssp EEEESCEEEECCGGGCSCCCSEEEEECTTCEEEEC
T ss_pred EEEcCCEEEecCCccccCCCCEEEEEcCCcEEEEc
Confidence 9999854433 222223336799999764444444
No 94
>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A
Probab=88.27 E-value=7.2 Score=32.49 Aligned_cols=56 Identities=11% Similarity=0.235 Sum_probs=39.9
Q ss_pred EEEEEEeeCCCCCCHHHHHHHhcCCCCceEEEEEEEecCCccCCCCceeEEEEEeEEEEeecC-CCCC
Q 013856 134 TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA-AKTP 200 (435)
Q Consensus 134 ~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lEI~v~~i~vls~~-~~lP 200 (435)
.|+|++-.+ ..+.++.+.+|+.|.|+|.+....+ .+ ..++|+++.|..|+.. ..-|
T Consensus 48 ~i~vv~~Gk-------~AE~~~~l~kGs~V~VeGrL~trs~--~G--~kl~l~a~~Ie~l~~~~~~~~ 104 (115)
T 3fhw_A 48 TISAVALGD-------LALLLADTPLGTEMQVQGFLAPARK--DS--VKVKLHLQQARRIAGSMGRDP 104 (115)
T ss_dssp EEEEEEETH-------HHHHHTTCCTTCEEEEEEEEEESST--TC--SSEEEEEEEEEECCCSCCC--
T ss_pred EEEEEEEhH-------HHHhhhccCCCCEEEEEEEEEECCC--CC--CEEEEEEEEEEEcCCCCCCCC
Confidence 488888742 2334578999999999999985432 23 3599999999999765 4434
No 95
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Probab=88.15 E-value=1.6 Score=48.11 Aligned_cols=106 Identities=21% Similarity=0.157 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHhhcCCeeeecCceeeecC----CCCCcceeee-ccCC-CceeeccChHHHHhhhccC----C---Ccee
Q 013856 251 QSQVGNIFRQFLLSENFVEIHTPKLIAGS----SEGGSAVFRL-DYKG-QSACLAQSPQLHKQMSICG----D---FGRV 317 (435)
Q Consensus 251 rs~i~~~~R~fl~~~gF~EV~TP~l~~~~----~egga~~F~~-~~~~-~~~~L~~Spql~lq~li~~----g---~~rV 317 (435)
...+.+.+|++|...||.|+-|-.+++.. ...+...+.+ |-.. ..-.||+|-=--+=..+.. + -=|+
T Consensus 491 ~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~~~l~~~~~~v~L~NPis~d~svLRtsLlpgLL~~l~~N~~r~~~~~vrl 570 (785)
T 1b7y_B 491 PYRKEQRLREVLSGLGFQEVYTYSFMDPEDARRFRLDPPRLLLLNPLAPEKAALRTHLFPGLVRVLKENLDLDRPERALL 570 (785)
T ss_dssp HHHHHHHHHHHHHHHTCEECCCCSEECTTHHHHTTCCCCSCEESSCSSTTSSEECSCSHHHHHHHHHHHHHHSCCSCEEE
T ss_pred HHHHHHHHHHHHHHCCCEEEecCcccCHHHHHhcCCCCCeEEEcCCCchhhhhhhhhhHHHHHHHHHHHhhcCCCCCeEE
Confidence 45567889999999999999998887642 1112233444 2222 2336776532222222221 2 2389
Q ss_pred EEEecceecCcCCCCccccchhhheeeeccc-----------ccHHHHHHHHHHHHHHH
Q 013856 318 FETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-----------KHYSEVMDIVDCLFVTI 365 (435)
Q Consensus 318 feIgp~FR~E~s~t~rHl~EFt~lE~e~a~~-----------~~~~d~m~~~e~l~~~i 365 (435)
||||+||| + .||.++..-+... -++.|+...++.++..+
T Consensus 571 FEiG~Vf~-~--------~e~~~lagl~~G~~~~~~w~~~~~vdf~dlKg~le~ll~~l 620 (785)
T 1b7y_B 571 FEVGRVFR-E--------REETHLAGLLFGEGVGLPWAKERLSGYFLLKGYLEALFARL 620 (785)
T ss_dssp EEEEEEES-S--------SEEEEEEEEEESSCBSCSSSSCCBCSHHHHHHHHHHHHHHH
T ss_pred EEEeeeec-c--------ChhhEEEEEEECCCcccccCccCCcCHHHHHHHHHHHHHHc
Confidence 99999999 2 6788888765543 14889999999998865
No 96
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}
Probab=84.90 E-value=11 Score=33.07 Aligned_cols=57 Identities=9% Similarity=0.074 Sum_probs=37.1
Q ss_pred eEEEEEEeeCCCCCCHHHHHH-HhcCCCCceEEEEEEEecCCc-cCCCCc-eeEEEEEeEEEEeecC
Q 013856 133 STVQCLATVKPDSVSKEMVRF-VRSLSNESIVDVIGVVSVPDV-EIKGAT-QQVEVQIKKLYCVSRA 196 (435)
Q Consensus 133 ~~iQvv~~~~~~~~~~~~~~~-~~~l~~esiV~V~G~v~~~~~-~~~~~t-~~lEI~v~~i~vls~~ 196 (435)
.-+.|++-.. .... ...|.+|+.|.|+|.+....- ...+.+ -.+||.+.+|.+|...
T Consensus 56 ~~i~vv~wg~-------~Ae~~~~~l~KG~~V~VeG~L~~~~~~dkdG~~r~~~eV~a~~i~~L~~k 115 (158)
T 3tqy_A 56 EWHRIAFFNR-------LAEIVGEYLRKGSKIYIEGSLRTRKWQDKNGVDRYTTEIIANEMHMLDNR 115 (158)
T ss_dssp EEEEEEEETH-------HHHHHHHHCCTTCEEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEECC--
T ss_pred EEEEEEEEhH-------HHHHHHhhcCCCCEEEEEEEEEeeeEECCCCCEEEEEEEEEeEEEEccCC
Confidence 4577777632 2233 356999999999999874321 122433 3499999999999653
No 97
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=84.49 E-value=8.9 Score=32.53 Aligned_cols=58 Identities=14% Similarity=0.127 Sum_probs=38.1
Q ss_pred CeEEEEEEeeCCCCCCHHHHHHH-hcCCCCceEEEEEEEecCCcc-CCCCc-eeEEEEEeEEEEeecC
Q 013856 132 VSTVQCLATVKPDSVSKEMVRFV-RSLSNESIVDVIGVVSVPDVE-IKGAT-QQVEVQIKKLYCVSRA 196 (435)
Q Consensus 132 ~~~iQvv~~~~~~~~~~~~~~~~-~~l~~esiV~V~G~v~~~~~~-~~~~t-~~lEI~v~~i~vls~~ 196 (435)
+.-+.|++-.. ..+.+ ..|.+||.|.|+|.+....-. ..+.+ -.+||.+.+|..|...
T Consensus 48 t~~~~v~~wg~-------~Ae~~~~~l~KG~~V~V~G~L~~~~~~dkdG~~r~~~ev~a~~i~~l~~~ 108 (134)
T 2vw9_A 48 VCFIDARLFGR-------TAEIANQYLSKGSSVLIEGRLTYESWMDQTGKKNSRHTITADSLQFMDKK 108 (134)
T ss_dssp EEEEEEEEEHH-------HHHHHHHHCCTTCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEECCCC
T ss_pred cEEEEEEEEcH-------HHHHHHHhCCCCCEEEEEEEEEeeeEECCCCCEEEEEEEEEEEEEEccCC
Confidence 34577877632 22333 469999999999998742211 22333 2489999999998653
No 98
>4gop_A Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=84.00 E-value=2.3 Score=35.50 Aligned_cols=54 Identities=26% Similarity=0.370 Sum_probs=39.3
Q ss_pred CCCCCEEEEEEEEeeeccCCCceEEEEEEe-CCeEEEEEEeeCCCCCCHHHHHHHhcCCCCceEEEEEEEec
Q 013856 101 SLKDQEVLIRGRVHTTRPVGNKLAFVVVRE-RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSV 171 (435)
Q Consensus 101 ~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd-~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~ 171 (435)
.+.|++|+|-|+|.+.+. + . +.|.. +++.|.|.++... .+..+.+|.|.|+|..
T Consensus 15 ~~~g~~VrivGkV~~~~g-~---~-~~l~s~d~~~Vtv~l~~~~------------~~~~~~~vEViG~V~~ 69 (114)
T 4gop_A 15 QYVGQTVRIVGKVHKVTG-N---T-LLMQTSDLGNVEIAMTPDS------------DVSSSTFVEVTGKVSD 69 (114)
T ss_dssp GGTTSEEEEEEEEEEEET-T---E-EEEECTTSCEEEEECCSSC------------CGGGCSEEEEEEEECT
T ss_pred hhCCCeEEEEEEEeeeCC-C---E-EEEEeCCCCEEEEEeCCCC------------CcccCcEEEEEEEEcC
Confidence 588999999999999995 3 3 34553 4567777765321 2346899999999964
No 99
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}
Probab=83.83 E-value=13 Score=30.51 Aligned_cols=57 Identities=18% Similarity=0.159 Sum_probs=36.3
Q ss_pred eEEEEEEeeCCCCCCHHHHH-HHhcCCCCceEEEEEEEecCCc-cCCCCc-eeEEEEEeEEEEeecC
Q 013856 133 STVQCLATVKPDSVSKEMVR-FVRSLSNESIVDVIGVVSVPDV-EIKGAT-QQVEVQIKKLYCVSRA 196 (435)
Q Consensus 133 ~~iQvv~~~~~~~~~~~~~~-~~~~l~~esiV~V~G~v~~~~~-~~~~~t-~~lEI~v~~i~vls~~ 196 (435)
.-++|++-.. ... ....|.+||.|.|+|.+....- ...|.+ ..+||.+..|..|...
T Consensus 50 ~~~~v~~wg~-------~Ae~~~~~l~KG~~V~V~G~l~~~~~~d~dG~~~~~~ev~a~~i~~l~~~ 109 (116)
T 3vdy_A 50 DYVNCTLWRK-------TAENTALYCQKGSLVGVSGRIQTRSYENEEGVNVYVTEVLADTVRFMDPK 109 (116)
T ss_dssp EEEEEEEEHH-------HHHHHHHHCCTTCEEEEEEEEEEEEEC----CCEEEEEEEEEEEEECC--
T ss_pred EEEEEEEECH-------HHHHHHHhCCCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEEEccCC
Confidence 4578887642 223 3356999999999999874321 122333 3499999999998653
No 100
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C
Probab=83.04 E-value=6.4 Score=34.10 Aligned_cols=57 Identities=23% Similarity=0.363 Sum_probs=40.2
Q ss_pred CCCCCCEEEEEEEEeeeccCCCceEEEEEEe-CCeEEEEEEeeCCCCCCHHHHHHHhcCCCCceEEEEEEEec
Q 013856 100 GSLKDQEVLIRGRVHTTRPVGNKLAFVVVRE-RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSV 171 (435)
Q Consensus 100 ~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd-~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~ 171 (435)
....|++|+|-|||.++-..| + .| .|.. ++..|+|.++.. ++ -..+.+|.|.|+|..
T Consensus 39 ~~fvGk~VriVGkV~~~~~~G-~-~~-~l~s~Dg~~VtV~l~~p---L~---------~~~~~~VEViG~V~~ 96 (142)
T 2pi2_E 39 AQFIDKPVCFVGRLEKIHPTG-K-MF-ILSDGEGKNGTIELMEP---LD---------EEISGIVEVVGRVTA 96 (142)
T ss_dssp GGSTTCEEEEEEEEEEECTTS-S-EE-EEECTTSCEEEEECSSC---CS---------SCCCSEEEEEEEECT
T ss_pred HhhCCCEEEEEEEEeEEcCCC-C-EE-EEEeCCCcEEEEEeCCC---CC---------ccCCCEEEEEEEECC
Confidence 468899999999999995556 3 33 4554 567888887632 11 124679999999953
No 101
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=79.33 E-value=15 Score=41.71 Aligned_cols=92 Identities=13% Similarity=0.209 Sum_probs=65.5
Q ss_pred eEeccccCCCCCCEEEEEEEEeee--cc--CCCceEEEEEEeCCeEEEEEEeeCCCCCCHHHHHHHhcCCCCceEEEEEE
Q 013856 93 TEVGALNGSLKDQEVLIRGRVHTT--RP--VGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGV 168 (435)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~--R~--~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~ 168 (435)
+.+.++.++ ...|+|.|.|-.+ |. .|+.+.-+.|.|.+++|.|....+. ++..+....|+.|++|.|.|.
T Consensus 8 ~~~~~~~~~--~~~~~~~g~v~~~~~~~~~~~~~~~~~~~td~~~~~~~k~f~~~----~~~~~~~~~~~~g~~~~~~g~ 81 (1041)
T 3f2b_A 8 RRLETIVEE--ERRVVVQGYVFDAEVSELKSGRTLLTMKITDYTNSILVKMFSRD----KEDAELMSGVKKGMWVKVRGS 81 (1041)
T ss_dssp BCGGGCCSC--EEEEEEEEEEEEEEEEECTTSCEEEEEEEECSSCEEEEEEECSS----HHHHHHHHTCCTTCEEEEEEE
T ss_pred ccHHHhhcc--cceEEEEEEEEEEEEEEccCCCEEEEEEEEeCCCCEEEEEeecc----cchHHHHhcCCCCCEEEEEEE
Confidence 455556532 4579999999875 32 4767777788999999988776432 333456678999999999999
Q ss_pred EecCCccCCCCceeEEEEEeEEEEeec
Q 013856 169 VSVPDVEIKGATQQVEVQIKKLYCVSR 195 (435)
Q Consensus 169 v~~~~~~~~~~t~~lEI~v~~i~vls~ 195 (435)
+.... -.+++.|.+..|..+.+
T Consensus 82 ~~~d~-----~~~~~~~~~~~~~~~~~ 103 (1041)
T 3f2b_A 82 VQNDT-----FVRDLVIIANDLNEIAA 103 (1041)
T ss_dssp EEEET-----TTTEEEEEEEEEEEECC
T ss_pred EEecc-----CCcceEEEeeeeEEecc
Confidence 87532 12467788888876654
No 102
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima}
Probab=78.94 E-value=18 Score=31.48 Aligned_cols=58 Identities=16% Similarity=0.126 Sum_probs=35.8
Q ss_pred CeEEEEEEeeCCCCCCHHHHH-HHhcCCCCceEEEEEEEecCCcc-CCCCc-eeEEEEEeEEEEeecC
Q 013856 132 VSTVQCLATVKPDSVSKEMVR-FVRSLSNESIVDVIGVVSVPDVE-IKGAT-QQVEVQIKKLYCVSRA 196 (435)
Q Consensus 132 ~~~iQvv~~~~~~~~~~~~~~-~~~~l~~esiV~V~G~v~~~~~~-~~~~t-~~lEI~v~~i~vls~~ 196 (435)
+.-+.|++-.. ... ..+.|.+|+.|.|+|.+....-. ..|.+ ..+||.+.+|.+|...
T Consensus 62 t~~~~v~~wg~-------~Ae~~~~~l~KG~~V~VeGrL~~~~~~dkdG~~r~~~eV~a~~i~~l~~~ 122 (153)
T 1z9f_A 62 TDFFRIVTFGR-------LAEFARTYLTKGRLVLVEGEMRMRRWETPTGEKRVSPEVVANVVRFMDRK 122 (153)
T ss_dssp EEEEEEEEEHH-------HHHHHHHHCCTTCEEEEEEEEEEEC-------CCCEEEEEEEEEEECC--
T ss_pred eEEEEEEEECH-------HHHHHHhhCCCCCEEEEEEEEEeceEECCCCCEEEEEEEEEEEEEEccCC
Confidence 34577777632 223 33569999999999998743211 12333 2489999999999754
No 103
>1j6q_A Cytochrome C maturation protein E; all-beta protein, heme delivery,cytochrome C maturation, OB- (oligonucleotide binding)fold; NMR {Shewanella putrefaciens} SCOP: b.40.9.1 PDB: 1lm0_A
Probab=74.08 E-value=29 Score=29.69 Aligned_cols=73 Identities=11% Similarity=0.134 Sum_probs=51.7
Q ss_pred CCCCCEEEEEEEEe--ee-cc-CCCceEEEEEEe-CCeEEEEEEeeCCCCCCHHHHHHHhcCCCCceEEEEEEEecCCcc
Q 013856 101 SLKDQEVLIRGRVH--TT-RP-VGNKLAFVVVRE-RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVE 175 (435)
Q Consensus 101 ~~~g~~V~v~GrV~--~~-R~-~G~kl~Fl~Lrd-~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~ 175 (435)
...|+.|+|.|.|. ++ |. .|..+.| .|.| ++.+|.|....- ++ ..++.|.-|.++|.+...+
T Consensus 29 ~~~g~~iRvgG~V~~GSv~r~~~~~~v~F-~vtD~~~~~v~V~Y~Gi---lP-------DlFrEGqgVVa~G~l~~~g-- 95 (136)
T 1j6q_A 29 PEAGQRIRVGGMVTVGSMVRDPNSLHVQF-AVHDSLGGEILVTYDDL---LP-------DLFREGQGIVAQGVLGEDG-- 95 (136)
T ss_dssp SCTTCEEEEEEEECTTCCEECTTSSCEEE-EEECTTCCCEEEEECSC---CT-------TSCCSSSEEEEEEEECSTT--
T ss_pred CCCCCEEEEeEEEeCCcEEecCCCCEEEE-EEEcCCCCEEEEEECCC---CC-------ccccCCCeEEEEEEECCCC--
Confidence 36789999999996 34 44 3556777 5688 888998887642 22 2577899999999985422
Q ss_pred CCCCceeEEEEEeEEEEeecC
Q 013856 176 IKGATQQVEVQIKKLYCVSRA 196 (435)
Q Consensus 176 ~~~~t~~lEI~v~~i~vls~~ 196 (435)
.+++++ ||.+|
T Consensus 96 --------~F~A~e--VLaKh 106 (136)
T 1j6q_A 96 --------KLAATE--VLAKH 106 (136)
T ss_dssp --------SEEEEE--EECCC
T ss_pred --------eEEEEE--EEecC
Confidence 155554 88888
No 104
>3ulp_A Single-strand binding protein; OB-fold, DNA binding, single-stranded DNA, apicoplast, DNA B protein-DNA complex; HET: DNA; 2.10A {Plasmodium falciparum}
Probab=72.86 E-value=39 Score=27.91 Aligned_cols=57 Identities=14% Similarity=0.120 Sum_probs=35.8
Q ss_pred eEEEEEEeeCCCCCCHHHHHH-HhcCCCCceEEEEEEEecCCcc-C--CCCc-eeEEEEEe----EEEEeec
Q 013856 133 STVQCLATVKPDSVSKEMVRF-VRSLSNESIVDVIGVVSVPDVE-I--KGAT-QQVEVQIK----KLYCVSR 195 (435)
Q Consensus 133 ~~iQvv~~~~~~~~~~~~~~~-~~~l~~esiV~V~G~v~~~~~~-~--~~~t-~~lEI~v~----~i~vls~ 195 (435)
.-+.|++-. +...+. .+.|.+|+.|.|+|.+....-. . .|.+ ..+||.+. +|..|+.
T Consensus 54 ~~~~v~~wg------~~~Ae~~~~~l~KG~~V~V~G~L~~~~~~d~~~dG~~~~~~ev~a~~~g~~i~~l~~ 119 (124)
T 3ulp_A 54 DWHRIVVYD------QNIVDLIDKYLRKGRRVYVQGSLHTRKWHTNDMNSQPKQITEIILSYNKGDLIFLDD 119 (124)
T ss_dssp EEEEEEECC------HHHHHHHHHHCCTTCEEEEEEEEEEEEECC----CCCEEEEEEEECTTTCEEEECC-
T ss_pred EEEEEEEEE------chHHHHHHhhcCCCCEEEEEEEEEeEEEeCCCCCCCEEEEEEEEEEcCCCcEEEecC
Confidence 347777653 112233 4569999999999998742211 1 2444 34999997 8998864
No 105
>1sr3_A APO-CCME; OB fold, beta barrel, flexible C-terminal domain, chaperone; NMR {Escherichia coli} SCOP: b.40.9.1
Probab=72.77 E-value=23 Score=30.35 Aligned_cols=73 Identities=15% Similarity=0.159 Sum_probs=51.7
Q ss_pred CCCCCEEEEEEEEe--ee-cc-CCCceEEEEEEeCCeEEEEEEeeCCCCCCHHHHHHHhcCCCCceEEEEEEEecCCccC
Q 013856 101 SLKDQEVLIRGRVH--TT-RP-VGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEI 176 (435)
Q Consensus 101 ~~~g~~V~v~GrV~--~~-R~-~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~ 176 (435)
...|+.|+|.|.|. ++ |. .|..+.| .|.|++.+|.|....- ++ ..++.|.-|.++|.+...+
T Consensus 25 ~~~g~~iRvgG~V~~GSv~r~~~~~~v~F-~vtD~~~~v~V~Y~Gi---lP-------DlFrEGqgVVa~G~l~~~g--- 90 (136)
T 1sr3_A 25 PEVGQRLRVGGMVMPGSVQRDPNSLKVTF-TIYDAEGSVDVSYEGI---LP-------DLFREGQGVVVQGELEKGN--- 90 (136)
T ss_dssp CCTTSEEEEEEEECTTTCEECSSSSEEEE-EEECSSCEEEEEEESC---CC-------TTCCTTSEEEEEEEECSSS---
T ss_pred CCCCCEEEEeeEEeCCcEEEcCCCCEEEE-EEEeCCcEEEEEECCC---CC-------ccccCCCeEEEEEEECCCC---
Confidence 35789999999998 34 43 2446777 6689889999888742 12 2567899999999985321
Q ss_pred CCCceeEEEEEeEEEEeecC
Q 013856 177 KGATQQVEVQIKKLYCVSRA 196 (435)
Q Consensus 177 ~~~t~~lEI~v~~i~vls~~ 196 (435)
.+.+++ ||.+|
T Consensus 91 -------~F~A~e--VLAKh 101 (136)
T 1sr3_A 91 -------HILAKE--VLAKH 101 (136)
T ss_dssp -------EEEESS--CBCCS
T ss_pred -------eEEEEE--EEecC
Confidence 255554 88898
No 106
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A
Probab=70.46 E-value=35 Score=29.15 Aligned_cols=57 Identities=14% Similarity=0.038 Sum_probs=36.8
Q ss_pred CeEEEEEEeeCCCCCCHHHHH-HHhcCCCCceEEEEEEEecCCcc-CCCCc-eeEEE---EEeEEEEeec
Q 013856 132 VSTVQCLATVKPDSVSKEMVR-FVRSLSNESIVDVIGVVSVPDVE-IKGAT-QQVEV---QIKKLYCVSR 195 (435)
Q Consensus 132 ~~~iQvv~~~~~~~~~~~~~~-~~~~l~~esiV~V~G~v~~~~~~-~~~~t-~~lEI---~v~~i~vls~ 195 (435)
+..+.|++-.. ..+ ....|.+||.|.|+|.+....-. ..+.+ -.+|| .+.+|..|..
T Consensus 52 t~~~~v~~wg~-------~Ae~~~~~l~KG~~V~V~G~L~~~~~~d~dG~~r~~~ei~a~va~~i~~l~~ 114 (145)
T 1qvc_A 52 TEWHRVVLFGK-------LAEVASEYLRKGSQVYIEGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGG 114 (145)
T ss_dssp CEEEEEEEETH-------HHHHHHHHCCTTCEEEEEEEEEEEEECSSSSCEEEEEEEECTTCEEEECCCC
T ss_pred cEEEEEEEehH-------HHHHHHHhcCCCCEEEEEEEEEeeEEECCCCcEEEEEEEeeeEeCEEEEccC
Confidence 44688887632 223 33569999999999998643211 22333 23788 7888888864
No 107
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=69.42 E-value=2.7 Score=46.25 Aligned_cols=66 Identities=18% Similarity=0.164 Sum_probs=45.4
Q ss_pred ccCCCCCCEEEEEEEEeeecc--CC-CceEEEEEEeCCeEEEEEEeeCCCCCCHHHHHHHhcCCC--CceEEEEEEEec
Q 013856 98 LNGSLKDQEVLIRGRVHTTRP--VG-NKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSN--ESIVDVIGVVSV 171 (435)
Q Consensus 98 l~~~~~g~~V~v~GrV~~~R~--~G-~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~--esiV~V~G~v~~ 171 (435)
+.+-..|+.|+|.|.|.+... .| .+..=+.+.|+++.++++...... . .+.++. |+.+.|.|.+..
T Consensus 159 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~d~~~~~~~~~f~~~~-~-------~~~~~~~~g~~~~~~G~~~~ 229 (780)
T 1gm5_A 159 LNDLLPGEKVTTQGKIVSVETKKFQNMNILTAVLSDGLVHVPLKWFNQDY-L-------QTYLKQLTGKEVFVTGTVKS 229 (780)
T ss_dssp SSCCCSSCCCEEEECCCCCEEEECSSCEEEEEEECCSSCCEEEEECSCCT-T-------HHHHHTTCSSCEEEEEEECS
T ss_pred HHHcCCCCEEEEEEEEEEEEeecCCCCeEEEEEEEECCceEEEEEECcHH-H-------HhhCccCCCCEEEEEEEEEE
Confidence 333355889999999987532 23 234445677998999999875321 1 234667 999999999965
No 108
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=69.13 E-value=29 Score=32.60 Aligned_cols=85 Identities=18% Similarity=0.203 Sum_probs=53.6
Q ss_pred CEEEEEEEEee---ecc--CCCceEEEEEE-e---------CCeEEEEEEeeCCCCCCHHHHHHHhcCCCCceEEEEEEE
Q 013856 105 QEVLIRGRVHT---TRP--VGNKLAFVVVR-E---------RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVV 169 (435)
Q Consensus 105 ~~V~v~GrV~~---~R~--~G~kl~Fl~Lr-d---------~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v 169 (435)
..|.|.|||.+ +|. .|..++-+.|- . .+.-+.|++-.. ....+..|.+|+.|.|+|.+
T Consensus 129 N~v~l~G~l~~dpe~r~t~~G~~v~~f~lAv~~~~~g~~~~~t~~~~v~~wg~-------~Ae~~~~l~KG~~V~V~G~l 201 (264)
T 2fxq_A 129 NQVILMGNLTRDPDLRYTPQGTAVVRLGLAVNERRRGQEEERTHFLEVQAWRE-------LAEWASELRKGDGLLVIGRL 201 (264)
T ss_dssp EEEEEEEEESSCCCCEECTTCCEEEEEEEEEECCC-------EEEEEEEEEHH-------HHHHHTTCCTTCEEEEEEEE
T ss_pred EEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCcCCCCccccEEEEEEEECh-------HHHHhhhcCCCCEEEEEEEE
Confidence 46889999987 454 35454544442 1 123578887632 22333389999999999998
Q ss_pred ecCCcc-CCCCc-eeEEEEEeEEEEeecC
Q 013856 170 SVPDVE-IKGAT-QQVEVQIKKLYCVSRA 196 (435)
Q Consensus 170 ~~~~~~-~~~~t-~~lEI~v~~i~vls~~ 196 (435)
....-. ..+.+ -.+||.+.+|..|...
T Consensus 202 ~~~~~~~~dG~~~~~~ev~a~~i~~l~~~ 230 (264)
T 2fxq_A 202 VNDSWTSSSGERRFQTRVEALRLERPTRG 230 (264)
T ss_dssp EEEEEECTTSCEEEEEEEEEEEEECCCC-
T ss_pred EeeEEECCCCCEEEEEEEEEEEEEECccc
Confidence 642211 12333 2489999999998643
No 109
>3mxn_B RECQ-mediated genome instability protein 2; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_B 3nbh_B
Probab=67.49 E-value=39 Score=29.32 Aligned_cols=73 Identities=22% Similarity=0.261 Sum_probs=50.0
Q ss_pred CEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEEeeCCCCCCHHHHHHHhcCCCCceEEEEEEEecCCccCCCCceeEE
Q 013856 105 QEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVE 184 (435)
Q Consensus 105 ~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lE 184 (435)
..||+.|.|-.. ..| . +.|+|+++++=+-...+ +.+. ...+..|.+|.|.|.+.. |+.+-.
T Consensus 59 s~VWmQG~VV~~-~~g-~---~~LdDgTG~~~v~g~~~---vp~g----~p~l~~G~YVMV~G~v~~-------~s~eP~ 119 (150)
T 3mxn_B 59 AAVWMQGRVVMA-DRG-E---ARLRDPSGDFSVRGLER---VPRG----RPCLVPGKYVMVMGVVQA-------CSPEPC 119 (150)
T ss_dssp SEEEEEEEEEEE-ETT-E---EEEEETTEEEEEECGGG---SCCC----SCCCSTTCEEEEEEEEEE-------CSSSCE
T ss_pred EEEEEEeEEEEe-CCC-e---EEEECCCceEEEeeccc---cCCC----CcccCCCCEEEEEEEEEe-------cCCCce
Confidence 579999999997 445 3 68999998755422111 1110 124789999999999874 223567
Q ss_pred EEEeEEEEeecC
Q 013856 185 VQIKKLYCVSRA 196 (435)
Q Consensus 185 I~v~~i~vls~~ 196 (435)
|.+.++.=||..
T Consensus 120 i~AvKm~DLS~~ 131 (150)
T 3mxn_B 120 LQAVKMTDLSDN 131 (150)
T ss_dssp EEEEEEEECCSC
T ss_pred EEEEEeeeCCCC
Confidence 888888888764
No 110
>2fxq_A Single-strand binding protein; strand beta-sheet extended loops, DNA binding protein; 1.85A {Thermus aquaticus} PDB: 2ihe_A 2cwa_A 2ihf_A
Probab=67.30 E-value=45 Score=31.26 Aligned_cols=57 Identities=12% Similarity=0.073 Sum_probs=35.2
Q ss_pred eEEEEEEeeCCCCCCHHHHH-HHhcCCCCceEEEEEEEecCCccCCCCce-eEEEEEeEEEEeecC
Q 013856 133 STVQCLATVKPDSVSKEMVR-FVRSLSNESIVDVIGVVSVPDVEIKGATQ-QVEVQIKKLYCVSRA 196 (435)
Q Consensus 133 ~~iQvv~~~~~~~~~~~~~~-~~~~l~~esiV~V~G~v~~~~~~~~~~t~-~lEI~v~~i~vls~~ 196 (435)
.-+.|++-.. ... ..+.|.+|+.|.|+|.+....-...+.+. .+||.+.+|.+|...
T Consensus 52 ~~~~v~~~g~-------~Ae~~~~~l~KG~~V~V~G~L~~~~~~~dG~~r~~~ev~a~~i~~l~~~ 110 (264)
T 2fxq_A 52 WYHRVRLLGR-------QAEMWGDLLEKGQLIFVEGRLEYRQWEKDGEKKSEVQVRAEFIDPLEGR 110 (264)
T ss_dssp EEEEEEEETH-------HHHHHTTTCCTTCEEEEEEEEEEC---------CCEEEEEEEEEECCCC
T ss_pred EEEEEEEEch-------HHHHHHHhCCCCCEEEEEEEEEeeeEEeCCEEEEEEEEEEEEEEECcCC
Confidence 3467777632 223 33469999999999999643211123332 389999999999754
No 111
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=65.77 E-value=42 Score=32.37 Aligned_cols=83 Identities=18% Similarity=0.286 Sum_probs=50.8
Q ss_pred EEEEEEEEee---ecc--CCCceEEEEEE------eC-------CeEEEEEEeeCCCCCCHHHHHHHhcCCCCceEEEEE
Q 013856 106 EVLIRGRVHT---TRP--VGNKLAFVVVR------ER-------VSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIG 167 (435)
Q Consensus 106 ~V~v~GrV~~---~R~--~G~kl~Fl~Lr------d~-------~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G 167 (435)
.|.|.|||.+ +|. .|..++-+.|- +. +.-+.|++-.. ....+..|.+|+.|.|+|
T Consensus 131 ~V~L~GrL~~dPelr~t~~G~~v~~f~lAv~~~~~d~~Ge~~~~t~~i~vvawg~-------~Ae~~~~l~KG~~V~V~G 203 (301)
T 1se8_A 131 EVLVLGNVTRDPEIRYTPAGDAVLSLSIAVNENYQDRQGQRQEKVHYIDATLWRD-------LAENMKELRKGDPVMIMG 203 (301)
T ss_dssp EEEEEEEECSCCEEEECTTCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEETH-------HHHHHTTCCTTCEEEEEE
T ss_pred EEEEEEEECcCCEEEECCCCCEEEEEEEEEcCceEcCCCCcccccEEEEEEECCH-------HHHHHHhcCCCCEEEEEE
Confidence 5779999987 564 35444444442 11 22477777632 233343399999999999
Q ss_pred EEecCCcc-CCCCc-eeEEEEEeEEEEeec
Q 013856 168 VVSVPDVE-IKGAT-QQVEVQIKKLYCVSR 195 (435)
Q Consensus 168 ~v~~~~~~-~~~~t-~~lEI~v~~i~vls~ 195 (435)
.+....-. ..+.+ -.+||.+.+|.+|..
T Consensus 204 rL~~~~y~dkdG~~r~~~ev~a~~i~~l~~ 233 (301)
T 1se8_A 204 RLVNEGWTDKDGNKRNSTRVEATRVEALAR 233 (301)
T ss_dssp EEEEEECC------CEEEEEEEEEEEECCC
T ss_pred EEeeeeEECCCCcEEEEEEEEEEEEEEecc
Confidence 98743211 12333 249999999999964
No 112
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=65.16 E-value=28 Score=30.05 Aligned_cols=89 Identities=9% Similarity=0.063 Sum_probs=59.0
Q ss_pred cceeEeccccCCCCCCEEEEEEEEeeec----------cCCC--------ceEEEEEEeCCeEEEEEEeeCCCCCCHHHH
Q 013856 90 REWTEVGALNGSLKDQEVLIRGRVHTTR----------PVGN--------KLAFVVVRERVSTVQCLATVKPDSVSKEMV 151 (435)
Q Consensus 90 ~~~~~i~~l~~~~~g~~V~v~GrV~~~R----------~~G~--------kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~ 151 (435)
..+.+|.+|.+.. .-|.|.|+|..+- ..|+ .++=+.|-|.+++|-..+=..
T Consensus 14 p~~~kI~dL~pg~--~~v~l~~kVl~~~~v~~~~~~~R~dG~~~~~~r~~~V~~~lVgDeTG~I~ftlW~e--------- 82 (145)
T 1wjj_A 14 PVFVKVEQLKPGT--TGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDETGCILFTARND--------- 82 (145)
T ss_dssp CSSCCSTTCCTTC--CCEEEEEEEEEEEECCSSSSCCSCSSCCSSCCCCCCCEEEEEECSSCEEEEEECTT---------
T ss_pred ccceEHHHcCCCC--CceEEEEEEEEcccccccccccccCCccccccCCceEEEEEEEcCCcEEEEEEecC---------
Confidence 4577889987643 3478888886542 1231 577778889999987776521
Q ss_pred HHHhcCCCCceEEEEEEEecCCccCCCCceeEEEEEeEEEEeecC
Q 013856 152 RFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA 196 (435)
Q Consensus 152 ~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lEI~v~~i~vls~~ 196 (435)
.+..|..||+|.+.+....- -.|.++|.+.+.--+.+.
T Consensus 83 -~~~~l~~Gd~v~i~na~v~~------~~G~~~L~vgk~g~Ie~~ 120 (145)
T 1wjj_A 83 -QVDLMKPGATVILRNSRIDM------FKGTMRLGVDKWGRIEAT 120 (145)
T ss_dssp -HHHHTCTTCEEEEEEEEEEE------ETTEEEEEECTTCCBCCC
T ss_pred -CcCcCCCCCEEEEeccEEEe------ECCEEEEEECCCEEEEEC
Confidence 23458899999999864421 124688988765555444
No 113
>3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA binding protein; 2.70A {Neisseria gonorrhoeae fa 1090}
Probab=63.80 E-value=56 Score=26.30 Aligned_cols=48 Identities=6% Similarity=0.026 Sum_probs=35.0
Q ss_pred EEEEEEeeCCCCCCHHHHHHHhcCCCCceEEEEEEEecCCccCCCCceeEEEEEeEEEEe
Q 013856 134 TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCV 193 (435)
Q Consensus 134 ~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lEI~v~~i~vl 193 (435)
.++|++-.+ ..+ +..|.+|+.|.|+|.+..... ++ ..+.||++.|+.+
T Consensus 54 ~i~vv~~gk-------~Ae-~~~l~KG~~v~veGrL~~rs~--~~--~~lvlhi~~i~~i 101 (103)
T 3k8a_A 54 EIPARILGR-------QAE-EWQYRQGDCATVEGFLAQKSR--RS--LMPMLRIQNIKEY 101 (103)
T ss_dssp EEEEEEEHH-------HHH-HSTTCTTCEEEEEEEEEESSS--SC--CCEEEEEEEEEEC
T ss_pred EEEEEEEhH-------Hhh-hhccCCCCEEEEEEEEEECcc--CC--ccEEEEEEEEEEc
Confidence 377777632 334 567999999999999975432 22 3699999999876
No 114
>4gs3_A Single-stranded DNA-binding protein; primosome, oligonucleotide/oligosaccharide binding domain, D binding protein; 1.09A {Thermoanaerobacter tengcongensis}
Probab=62.42 E-value=63 Score=26.38 Aligned_cols=82 Identities=16% Similarity=0.147 Sum_probs=46.8
Q ss_pred CEEEEEEEEee---ecc--CCCceEEEEEE-----eCCeEEEEEEeeCCCCCCHHHHHHHhcCCCCceEEEEEEEec-CC
Q 013856 105 QEVLIRGRVHT---TRP--VGNKLAFVVVR-----ERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSV-PD 173 (435)
Q Consensus 105 ~~V~v~GrV~~---~R~--~G~kl~Fl~Lr-----d~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~-~~ 173 (435)
..|.|-|||.+ .|- .|..++=+.|- +....|-|++...... ...+.+|+.|.|.|.+.. ..
T Consensus 12 N~V~LiGrl~~dpelr~t~~G~~v~~f~lAV~R~~~~~Dfi~ivvw~klAe--------~~~~~kG~~v~v~G~lrsy~~ 83 (107)
T 4gs3_A 12 NTVTLVGKVFTPLEFSHELYGEKFFNFILEVPRLSETKDYLPITISNRLFE--------GMNLEVGTRVKIEGQLRSYNR 83 (107)
T ss_dssp SCEEEEEEECSCCEEEEEETTEEEEEEEEEEECTTSCEEEEEEEEEGGGST--------TCCCCTTCEEEEEEEEEEEEC
T ss_pred CEEEEEEEECCCceEEEecCCcEEEEEEEEeCCCCCCCcEEEEEEEhHHhh--------HHhhcCCCEEEEEEEEEecce
Confidence 34778888865 232 35333222222 2345788888754211 123569999999999852 11
Q ss_pred -ccCCCCc-eeEEEEEeEEEEee
Q 013856 174 -VEIKGAT-QQVEVQIKKLYCVS 194 (435)
Q Consensus 174 -~~~~~~t-~~lEI~v~~i~vls 194 (435)
....|.+ --+||.+.+|..|+
T Consensus 84 ~~~~dG~~R~v~eV~a~~i~fld 106 (107)
T 4gs3_A 84 KSPEEGKNKLILTVFARDISVVP 106 (107)
T ss_dssp C--------EEEEEEEEEEEEEC
T ss_pred EECCCCCEEEEEEEEEEEEEEcc
Confidence 1112222 34999999999885
No 115
>3lgj_A Single-stranded DNA-binding protein; niaid, CAT scratch fever, rochalimaea, LYME disease, ALS collaborative crystallography, DNA replication; 2.50A {Bartonella henselae}
Probab=60.33 E-value=89 Score=27.43 Aligned_cols=85 Identities=12% Similarity=0.187 Sum_probs=47.0
Q ss_pred EEEEEEEEee---ecc--CCCceEEEEEE------e--------CCeEEEEEEeeCCCCCCHHHHHH-HhcCCCCceEEE
Q 013856 106 EVLIRGRVHT---TRP--VGNKLAFVVVR------E--------RVSTVQCLATVKPDSVSKEMVRF-VRSLSNESIVDV 165 (435)
Q Consensus 106 ~V~v~GrV~~---~R~--~G~kl~Fl~Lr------d--------~~~~iQvv~~~~~~~~~~~~~~~-~~~l~~esiV~V 165 (435)
.|.|.|||-+ +|. .|..++-+.|- + .+.-+.|++-. +...+. .+.|.+|+.|.|
T Consensus 25 kV~LiGrL~~DPelr~t~~G~~v~~FslAv~~~~~~~~~Ge~~~~t~~i~vv~wg------~~lAe~~~~~l~KG~~V~V 98 (169)
T 3lgj_A 25 KVMLIGYLGDDPESKTMTSGAEVVNFRMATFESYMNKNTHQKVEKTEWHSVVVFN------PHFAKIALQYLHKGSKVYI 98 (169)
T ss_dssp EEEEEEEESSCCEEEECTTSCEEEEEEEEEEC------------CEEEEEEEECC------HHHHHHHHHHCCTTCEEEE
T ss_pred EEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceecccCCccccccEEEEEEEeC------HHHHHHHHHhCCCCCEEEE
Confidence 5777777765 443 24334433331 1 23356777652 212333 356999999999
Q ss_pred EEEEecCCcc-CCCCc-eeEEEEE----eEEEEeecC
Q 013856 166 IGVVSVPDVE-IKGAT-QQVEVQI----KKLYCVSRA 196 (435)
Q Consensus 166 ~G~v~~~~~~-~~~~t-~~lEI~v----~~i~vls~~ 196 (435)
+|.+....-. ..|.+ -.+||.+ .+|.+|+..
T Consensus 99 eGrL~~r~~~dkdG~~r~~~eIva~~~~~~i~~L~~k 135 (169)
T 3lgj_A 99 EGKLQTRKWQDKNGHDRYTTEIVLPQYKGELHLLDAK 135 (169)
T ss_dssp EEEEEEECC--------CEEEEEECTTCCEEEEECC-
T ss_pred EEEEEEEEEECCCCCEEEEEEEEEEeccCcEEEccCC
Confidence 9999743211 22333 2488887 589998654
No 116
>1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3
Probab=58.39 E-value=88 Score=30.07 Aligned_cols=58 Identities=14% Similarity=0.042 Sum_probs=36.3
Q ss_pred eEEEEEEeeCCCCCCHHHHHHHhc-CCCCceEEEEEEEecCCc-cCCCCc-eeEEEEEeEEEEeecC
Q 013856 133 STVQCLATVKPDSVSKEMVRFVRS-LSNESIVDVIGVVSVPDV-EIKGAT-QQVEVQIKKLYCVSRA 196 (435)
Q Consensus 133 ~~iQvv~~~~~~~~~~~~~~~~~~-l~~esiV~V~G~v~~~~~-~~~~~t-~~lEI~v~~i~vls~~ 196 (435)
..+.|++... ......+. |.+|+.|.|+|.+....- ...+.+ -.+||.+.+|.+|...
T Consensus 52 ~~i~vv~~g~------~Ae~~~~~~l~KG~~V~VeG~L~~r~~~dkdG~~r~~~ev~a~~i~~l~~~ 112 (301)
T 1se8_A 52 WYHRVSILGK------PAEWQAERNLKGGDAVVVEGTLEYRQWEAPEGGKRSAVNVKALRMEQLGTQ 112 (301)
T ss_dssp EEEEEEEESH------HHHHHHHTCCCTTCEEEEEEEEEEEEEC-----CEEEEEEEEEEEEECSSC
T ss_pred EEEEEEEEcH------HHHHHHhhCCCCCCEEEEEEEEEeeeEECCCCCEEEEEEEEEeEEEEeecc
Confidence 3577777632 11223456 899999999999874211 112333 2389999999999653
No 117
>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA replication, phosphoprotein; 2.14A {Streptomyces coelicolor}
Probab=56.80 E-value=1.1e+02 Score=27.60 Aligned_cols=55 Identities=16% Similarity=0.142 Sum_probs=33.2
Q ss_pred CeEEEEEEeeCCCCCCHHHHHHHhcCCCCceEEEEEEEecCCcc-CCCCc-eeEEEEEeEEEE
Q 013856 132 VSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVE-IKGAT-QQVEVQIKKLYC 192 (435)
Q Consensus 132 ~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~-~~~~t-~~lEI~v~~i~v 192 (435)
+.-+.|++-.. ......+.|++|+.|.|+|.+....-. ..+.+ ..+||.+.+|..
T Consensus 52 T~wi~Vvawgk------lAE~v~~~L~KG~~V~VeGrL~~rswedkdG~kr~~~eVvA~~Ig~ 108 (199)
T 3eiv_A 52 SLFLTCSVWRQ------AAENVAESLQRGMRVIVQGRLKQRSYEDREGVKRTVYELDVDEVGA 108 (199)
T ss_dssp CEEEEEEEETH------HHHHHHHHCCTTCEEEEEEEEEEEC--------CCEEEEEEEEEEE
T ss_pred cEEEEEEEEhH------HHHHHHHhcCCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEec
Confidence 34577887632 111234569999999999999743211 12222 348999998875
No 118
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=55.91 E-value=10 Score=41.80 Aligned_cols=110 Identities=11% Similarity=0.074 Sum_probs=64.5
Q ss_pred HHHHHHHhhcCCeeeecCceeeecCC----CCCcceeee-ccCC-CceeeccChHHHHhhhc----cCCC--ceeEEEec
Q 013856 255 GNIFRQFLLSENFVEIHTPKLIAGSS----EGGSAVFRL-DYKG-QSACLAQSPQLHKQMSI----CGDF--GRVFETGP 322 (435)
Q Consensus 255 ~~~~R~fl~~~gF~EV~TP~l~~~~~----egga~~F~~-~~~~-~~~~L~~Spql~lq~li----~~g~--~rVfeIgp 322 (435)
.+.+|+.|...||.||-|-.+++... .++.....+ |-.. .--.||+|-=--|=..+ .-+. =|+||||+
T Consensus 495 ~~~~r~~l~~~G~~Evitysf~~~~~~~~~~~~~~~v~l~NPis~e~svmRtsLlpgLL~~~~~N~~r~~~~v~lFEiG~ 574 (795)
T 3pco_B 495 LKRVKTLLNDKGYQEVITYSFVDPKVQQMIHPGVEALLLPSPISVEMSAMRLSLWTGLLATVVYNQNRQQNRVRIFESGL 574 (795)
T ss_dssp HHHHHHHHHHTTCEECCCCSEECHHHHHHHSSSCCCCBCSSCSCSTTCEECSSSHHHHHHHHHHHHTSSCCCCEEEEEEE
T ss_pred HHHHHHHHHHCCCeeeeccCcCCHHHHHhhCCCCCeEEEcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCccEEEeee
Confidence 45789999999999999999986421 111222222 2222 33468877432222122 2233 38999999
Q ss_pred ceecCcCCCCccccchhhheeeeccc------------ccHHHHHHHHHHHHHHH
Q 013856 323 VFRAEDSYTHRHLCEFTGLDVEMEIK------------KHYSEVMDIVDCLFVTI 365 (435)
Q Consensus 323 ~FR~E~s~t~rHl~EFt~lE~e~a~~------------~~~~d~m~~~e~l~~~i 365 (435)
||+..+. +..+..|..+|=+-+... -++.|+...+|.++..+
T Consensus 575 Vf~~~~~-~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~dF~dlKg~ve~ll~~l 628 (795)
T 3pco_B 575 RFVPDTQ-APLGIRQDLMLAGVICGNRYEEHWNLAKETVDFYDLKGDLESVLDLT 628 (795)
T ss_dssp EEEECTT-SSTTEEEEEEEEEEEESBSSCSCSSSCCCBCCHHHHHHHHHHHTTTS
T ss_pred EEecCCC-cccCcchhheEEEEEECCCcccccccCCCCCCHHHHHHHHHHHHHHc
Confidence 9987552 223334544544433220 14789999899888653
No 119
>3pgz_A Single-stranded DNA-binding protein; ssgcid, single-strand binding protein, structural genomics center for infectious disease; 2.10A {Bartonella henselae}
Probab=55.67 E-value=95 Score=28.02 Aligned_cols=58 Identities=14% Similarity=0.192 Sum_probs=35.8
Q ss_pred eEEEEEEeeCCCCCCHHHHHHH-hcCCCCceEEEEEEEecCCc-cCCCCc-eeEEEEEe----EEEEeecC
Q 013856 133 STVQCLATVKPDSVSKEMVRFV-RSLSNESIVDVIGVVSVPDV-EIKGAT-QQVEVQIK----KLYCVSRA 196 (435)
Q Consensus 133 ~~iQvv~~~~~~~~~~~~~~~~-~~l~~esiV~V~G~v~~~~~-~~~~~t-~~lEI~v~----~i~vls~~ 196 (435)
.-+.|++-. +...+.+ +.|.+|+.|.|+|.+....- ...+.+ -.+||.+. +|.+|...
T Consensus 74 dwi~Vvawg------k~lAe~~~~yL~KGs~V~VeGrL~trswedkdG~kr~~tEVva~~~~~~i~fL~sk 138 (193)
T 3pgz_A 74 EWHNIVIFN------ENLVKVVEQYLKKGSKIYIEGQLQTRKWQDQNGNDRYTTEIVLQKYRGELQMLDGR 138 (193)
T ss_dssp EEEEEEECC------HHHHHHHHHHCCTTCEEEEEEEEEEEEEECTTSCEEEEEEEEECTTCCEEEECC--
T ss_pred EEEEEEEEC------HHHHHHHHhhcCCCCEEEEEEEEEEEEeECCCCCEEEEEEEEEEeccCceEECcCC
Confidence 346777653 2223444 46999999999999874321 122333 34899998 68888643
No 120
>3ull_A DNA binding protein; DNA replication, mitochondrion, transit peptide; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 PDB: 1s3o_A* 2dud_A
Probab=46.75 E-value=26 Score=29.37 Aligned_cols=43 Identities=9% Similarity=0.138 Sum_probs=29.3
Q ss_pred HhcCCCCceEEEEEEEecCCc-cCCCCc-eeEEEEEeEEEEeecC
Q 013856 154 VRSLSNESIVDVIGVVSVPDV-EIKGAT-QQVEVQIKKLYCVSRA 196 (435)
Q Consensus 154 ~~~l~~esiV~V~G~v~~~~~-~~~~~t-~~lEI~v~~i~vls~~ 196 (435)
...|..|+.|.|+|.+....- ...|.+ -.+||.+..|.+|++.
T Consensus 83 ~~~l~KG~~V~V~G~L~~~~~~d~dG~~r~~~ev~a~~i~~l~~~ 127 (132)
T 3ull_A 83 YQYVKKGSRIYLEGKIDYGEYMDKNNVRRQATTIIADNIIFLSDQ 127 (132)
T ss_dssp HHHCCTTCEEEEEEEEECCCEESSSSEECCCEEEEEEEEECC---
T ss_pred HhhCCCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEEEccCC
Confidence 356999999999999974321 122333 2499999999998753
No 121
>3afp_A Single-stranded DNA-binding protein; OB-fold, quaternary structure and stability, changes on oligomerisation, water-bridges, DNA damage; 2.05A {Mycobacterium leprae} PDB: 3afq_A 1ue1_A 1ue5_A 1ue6_A 1ue7_A 1x3e_A 1x3f_A 1x3g_A 3a5u_A*
Probab=44.94 E-value=1.6e+02 Score=25.70 Aligned_cols=53 Identities=21% Similarity=0.260 Sum_probs=31.9
Q ss_pred CeEEEEEEeeCCCCCCHHHHHHHhcCCCCceEEEEEEEecCCcc-CCCCc-eeEEEEEeEE
Q 013856 132 VSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVE-IKGAT-QQVEVQIKKL 190 (435)
Q Consensus 132 ~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~-~~~~t-~~lEI~v~~i 190 (435)
+.-+.|++-.. ......+.|++|+.|.|+|.+....-. ..+.+ ..+||.+.+|
T Consensus 52 t~~~~v~~wg~------~Ae~~~~~l~KG~~V~VeGrL~~~~~~dkdG~~r~~~ev~a~~v 106 (168)
T 3afp_A 52 ALFLRCNIWRE------AAENVAESLTRGARVIVTGRLKQRSFETREGEKRTVVEVEVDEI 106 (168)
T ss_dssp CEEEEEEEEHH------HHHHHHHHCCTTCEEEEEEEEEEEEEC-CCSCCEEEEEEEEEEE
T ss_pred cEEEEEEEehH------HHHHHHHhCCCCCEEEEEEEEEeeeEECCCCcEEEEEEEEEEEe
Confidence 34678887642 112234679999999999998743211 12333 2377877654
No 122
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=43.07 E-value=59 Score=24.43 Aligned_cols=52 Identities=19% Similarity=0.210 Sum_probs=36.2
Q ss_pred CCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEEeeCCCCCCHHHHHHHhcCCCCceEEEEE
Q 013856 103 KDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIG 167 (435)
Q Consensus 103 ~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G 167 (435)
.|+. +.|.|.++...| +|++|.++ +.+++..+. ++.. +...+..||.|.|.=
T Consensus 5 ~G~i--v~G~V~~v~~~G---~fV~l~~~---~~Gllh~se--l~~~---~~~~~~~Gd~V~v~V 56 (80)
T 2k52_A 5 PGKF--YKGVVTRIEKYG---AFINLNEQ---VRGLLRPRD--MISL---RLENLNVGDEIIVQA 56 (80)
T ss_dssp TTCE--EEEEEEEEETTE---EEEEEETT---EEEEECGGG--CSSC---CGGGCCTTCEEEEEE
T ss_pred CCCE--EEEEEEEEeCCE---EEEEECCC---CEEEEEHHH--CCcc---cceeeCCCCEEEEEE
Confidence 4554 889999999988 89999653 678887543 2111 114689999887654
No 123
>2kqr_A Asparaginyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA synthetase, ATP-binding, ligas nucleotide-binding, protein biosynthesis; NMR {Brugia malayi}
Probab=42.13 E-value=8.8 Score=31.96 Aligned_cols=24 Identities=29% Similarity=0.273 Sum_probs=20.8
Q ss_pred cccChhHHHHHHHHHHHHHHHHHH
Q 013856 19 QSISKKAAKKEAAKKAKEERRKEA 42 (435)
Q Consensus 19 ~~~sk~~lkk~~k~~~k~~kka~~ 42 (435)
+++||++|||..|..+.+.+|+++
T Consensus 54 ~~~skSaLKKa~K~~~~~~kK~~k 77 (113)
T 2kqr_A 54 EAASKTALKKSWKRYEQEMLKNEK 77 (113)
T ss_dssp EECCHHHHHHHHHHHHHHHHHTCT
T ss_pred ccccHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999888653
No 124
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=37.87 E-value=43 Score=29.87 Aligned_cols=56 Identities=14% Similarity=0.218 Sum_probs=32.7
Q ss_pred CCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEEeeCCCCCCHHHHHHH-hcCCCCceEEEE
Q 013856 103 KDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFV-RSLSNESIVDVI 166 (435)
Q Consensus 103 ~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~-~~l~~esiV~V~ 166 (435)
.|+. +.|+|.++...| +|++|-+.+ .+.+++..+. ++...++.. ..++.|+.|.|.
T Consensus 15 ~G~i--v~G~V~~I~~fG---aFV~L~e~~-g~eGLvhiSe--ls~~~v~~~~~~~~vGd~V~Vk 71 (182)
T 1kl9_A 15 VEDV--VMVNVRSIAEMG---AYVSLLEYN-NIEGMILLSE--LSRRRIRSINKLIRIGRNECVV 71 (182)
T ss_dssp TTCE--EEEEEEEECSSE---EEEEETTTT-TEEEEEEGGG--C------------CTTCEEEEE
T ss_pred CCCE--EEEEEEEEeccE---EEEEEccCC-CcEEEEEHHH--CCCcccCCHHHhcCCCCEEEEE
Confidence 4664 789999999998 999995322 2788888653 232222222 236777776654
No 125
>3en2_A Probable primosomal replication protein N; PRIB RSR213C NESG X-RAY Q8XZT7 Q8XZT7_ralso, structural genomics, PSI-2; 2.30A {Ralstonia solanacearum}
Probab=37.78 E-value=1e+02 Score=24.80 Aligned_cols=48 Identities=13% Similarity=0.299 Sum_probs=31.5
Q ss_pred eEEEEEEeeCCCCCCHHHHHHHhcCCCCceEEEEEEEecCCccCCCCceeEEEEEeEEE
Q 013856 133 STVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLY 191 (435)
Q Consensus 133 ~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lEI~v~~i~ 191 (435)
..|+|++-.+ ..+.+..+..|+.|.|+|.+...... ...+=++|+.+.
T Consensus 48 f~i~vv~wGk-------~AE~~~~~~kGs~V~VeGrL~trs~~----s~~lvlhi~~~~ 95 (101)
T 3en2_A 48 FSIEALGAGK-------MASVLDRIAPGTVLECVGFLARKHRS----SKALVFHISGLE 95 (101)
T ss_dssp EEEEEEEETH-------HHHHHTTSCTTCEEEEEEEEEECC--------CEEEEEEEEE
T ss_pred EEEEEEEEhH-------HHHHHhhcCCCCEEEEEEEEEeCcCC----CCeeEEEEeccc
Confidence 4488888742 34456679999999999999743211 134667777654
No 126
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=37.28 E-value=1.6e+02 Score=23.75 Aligned_cols=79 Identities=13% Similarity=0.159 Sum_probs=44.0
Q ss_pred EEEEEEEEee---eccC--C-CceEEEEEE-------eCCeEEEEEEeeCCCCCCHHHHHH-HhcCCCCceEEEEEEEec
Q 013856 106 EVLIRGRVHT---TRPV--G-NKLAFVVVR-------ERVSTVQCLATVKPDSVSKEMVRF-VRSLSNESIVDVIGVVSV 171 (435)
Q Consensus 106 ~V~v~GrV~~---~R~~--G-~kl~Fl~Lr-------d~~~~iQvv~~~~~~~~~~~~~~~-~~~l~~esiV~V~G~v~~ 171 (435)
.|.+-|||-. +|-. | ..++=+.|- +.+.-+.|++-.+ ..+. .+.|.+||.|.|+|.+..
T Consensus 13 ~v~LiGrL~~DPelR~t~~g~~~va~f~lAv~~~~~~~~t~fi~vv~wgk-------~AE~~~~yl~KG~~V~VeGrL~~ 85 (108)
T 3koj_A 13 SCILQATVVEAPQLRYAQDNQTPVAEMVVQFPGLSSKDAPARLKVVGWGA-------VAQELQDRCRLNDEVVLEGRLRI 85 (108)
T ss_dssp EEEEEEEEEEEEEEEECTTSSSEEEEEEEEECC-----CCEEEEEEEETH-------HHHHHHHHCCTTCEEEEEEEEEE
T ss_pred eEEEEEEECCCCEEEEeCCCCEEEEEEEEEECCcccCCCcEEEEEEEEhH-------HHHHHHHhCCCCCEEEEEEEEEe
Confidence 5667777765 4432 3 233333332 1345688887642 2233 356999999999999874
Q ss_pred CCcc-CCCCc-eeEEEEEeEEE
Q 013856 172 PDVE-IKGAT-QQVEVQIKKLY 191 (435)
Q Consensus 172 ~~~~-~~~~t-~~lEI~v~~i~ 191 (435)
..-. ..|.+ -..||.+.+|+
T Consensus 86 r~y~~kdG~kr~~tEVva~~i~ 107 (108)
T 3koj_A 86 NSLLKPDGNREKQTELTVTRVH 107 (108)
T ss_dssp EC--------CCEEEEEEEEEE
T ss_pred eeEECCCCCEEEEEEEEEEEEE
Confidence 3211 12322 34888888775
No 127
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.52 E-value=46 Score=26.49 Aligned_cols=60 Identities=17% Similarity=0.132 Sum_probs=36.7
Q ss_pred CCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEEeeCCCCCCHHHH-HHHhcCCCCceEEEEE
Q 013856 102 LKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMV-RFVRSLSNESIVDVIG 167 (435)
Q Consensus 102 ~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~-~~~~~l~~esiV~V~G 167 (435)
..|+. +.|+|.++...| +|++|.+-...+.+++..+.-. +...+ +.-..++.||.|.|.=
T Consensus 11 ~vG~i--~~G~V~~v~~fG---~FV~l~~~~~~~~Glvhisel~-~~~~~~~~~~~~~~Gd~V~VkV 71 (103)
T 2eqs_A 11 TIGDI--YNGKVTSIMQFG---CFVQLEGLRKRWEGLVHISELR-REGRVANVADVVSKGQRVKVKV 71 (103)
T ss_dssp CTTCE--EEEEEEEECSSC---EEEEECSSSSCCEEEECGGGTS-SSSCCCCHHHHCCTTCEEEEEE
T ss_pred CCCCE--EEEEEEEEeccE---EEEEEcCCCCCeEEEEEHHHCC-CCcccCCcccEeCCCCEEEEEE
Confidence 45664 789999999998 8999965212467777654210 10000 0123488888887654
No 128
>1ou8_A Stringent starvation protein B homolog; peptide-binding pocket, protein-peptide complex, homodimer, transport protein; 1.60A {Haemophilus influenzae} SCOP: b.136.1.1 PDB: 1zsz_A 1twb_A 1zsz_B
Probab=28.40 E-value=51 Score=27.22 Aligned_cols=54 Identities=20% Similarity=0.330 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhhcCCeeeecCceeeecCCCCCcceeeecc-CCCceeeccChHHHHhh
Q 013856 250 IQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDY-KGQSACLAQSPQLHKQM 308 (435)
Q Consensus 250 ~rs~i~~~~R~fl~~~gF~EV~TP~l~~~~~egga~~F~~~~-~~~~~~L~~Spql~lq~ 308 (435)
.|--+++++.+|+.++|| ||.|.-.+.-.|..+= ..| .+...-|-+||+-....
T Consensus 8 ~rPYLiRA~yeWi~DN~~----TP~l~Vda~~~~v~VP-~~~v~dGqIvLNIsp~Av~~L 62 (111)
T 1ou8_A 8 KRPYLLRAYYDWLVDNSF----TPYLVVDATYLGVNVP-VEYVKDGQIVLNLSASATGNL 62 (111)
T ss_dssp SHHHHHHHHHHHHHHTTC----CEEEEEETTSTTCBCC-GGGCBTTEEEEECSTTTCEEE
T ss_pred CccHHHHHHHHHHHhCCC----cceEEEEcCCCCCcCC-HHHhcCCEEEEECChhhhcCe
Confidence 366789999999999999 9999776553444421 122 35678888888766653
No 129
>1yfn_A Stringent starvation protein B; protein-peptide complex, SSPB, RSEA, protein binding; 1.80A {Escherichia coli} SCOP: b.136.1.1 PDB: 1ox9_A 1ox8_A
Probab=28.26 E-value=55 Score=27.29 Aligned_cols=54 Identities=20% Similarity=0.385 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHhhcCCeeeecCceeeecCCCCCcceeeecc-CCCceeeccChHHHHhh
Q 013856 250 IQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDY-KGQSACLAQSPQLHKQM 308 (435)
Q Consensus 250 ~rs~i~~~~R~fl~~~gF~EV~TP~l~~~~~egga~~F~~~~-~~~~~~L~~Spql~lq~ 308 (435)
.|--+++++.+|+.++|| ||.|.-.+.-.|..+= ..| .+...-|-+||+-....
T Consensus 9 ~rPYLiRA~yeWi~DN~~----TP~l~Vda~~~~v~VP-~~~v~dGqIVLNIsp~Av~~L 63 (118)
T 1yfn_A 9 RRPYLLRAFYEWLLDNQL----TPHLVVDVTLPGVQVP-MEYARDGQIVLNIAPRAVGNL 63 (118)
T ss_dssp SHHHHHHHHHHHHHHTTC----CEEEEEETTSTTCBSC-GGGCBTTEEEEECSGGGCEEE
T ss_pred CccHHHHHHHHHHHcCCC----cceEEEEcCCCCccCC-HHHhcCCEEEEECChhhhcCe
Confidence 466789999999999999 9999776553444421 123 25678888888876663
No 130
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=28.16 E-value=53 Score=27.39 Aligned_cols=56 Identities=25% Similarity=0.269 Sum_probs=36.5
Q ss_pred CCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEEeeCCCCCCHHHH-HHHhcCCCCceEEEEE
Q 013856 102 LKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMV-RFVRSLSNESIVDVIG 167 (435)
Q Consensus 102 ~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~-~~~~~l~~esiV~V~G 167 (435)
..|+ .+.|.|.++...| +|+.|-++ +++++..+.- +...+ ..-..+..||.|.|.=
T Consensus 6 ~vG~--iv~G~V~~i~~~G---~FV~l~~~---~~Glihisel--~~~~~~~~~~~~~vGd~V~vkV 62 (130)
T 2k4k_A 6 EVGS--VYTGKVTGLQAYG---AFVALDEE---TQGLVHISEV--THGFVKDINEHLSVGDEVQVKV 62 (130)
T ss_dssp CTTC--EEEEEEEEEETTE---EEEEEETT---EEEEEEGGGT--SSSCCSCGGGTCCTTCEEEEEE
T ss_pred CCCC--EEEEEEEEEeCCe---EEEEECCC---cEEEEEHHHC--CcccccCccccCCCCCEEEEEE
Confidence 3466 3689999999888 99999553 7888876431 11100 0124588999887654
No 131
>2kct_A Cytochrome C-type biogenesis protein CCME; solution structure, heme chaperone, cytochrome C biogenesis, OB-fold domain, NESG, PSI-2; NMR {Desulfovibrio vulgaris str}
Probab=27.61 E-value=2.3e+02 Score=22.44 Aligned_cols=73 Identities=18% Similarity=0.155 Sum_probs=51.0
Q ss_pred CCCCCEEEEEEEEee---ecc-CCCceEEEEEEeC---CeEEEEEEeeCCCCCCHHHHHHHhcCCCCceEEEEEEEec-C
Q 013856 101 SLKDQEVLIRGRVHT---TRP-VGNKLAFVVVRER---VSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSV-P 172 (435)
Q Consensus 101 ~~~g~~V~v~GrV~~---~R~-~G~kl~Fl~Lrd~---~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~-~ 172 (435)
...|+.++|.|-|.. .|. .|..+.| .|.|+ +.+|.|....- ++ ..++-|.-|.++|.+.. .
T Consensus 5 ~~~~~~iRvgG~V~~GSv~r~~~~~~v~F-~vtD~~~~~~~v~V~Y~Gi---lP-------DlFrEGqgVV~~G~l~~~~ 73 (94)
T 2kct_A 5 QDKLHTVRLFGTVAADGLTMLDGAPGVRF-RLEDKDNTSKTVWVLYKGA---VP-------DTFKPGVEVIIEGGLAPGE 73 (94)
T ss_dssp SCTTCCEEEEEEECSTTCEECTTSSEEEE-EEECSSCTTCEEEEEEESC---CC-------TTCCTTCEEEEEEEECTTC
T ss_pred CCCCCeEEEeeEEeCCeEEecCCCCEEEE-EEEcCCCCCcEEEEEECCC---CC-------ccccCCCeEEEEEEEeCCC
Confidence 356889999999974 454 3557777 56777 78999988743 22 25778999999999853 2
Q ss_pred CccCCCCceeEEEEEeEEEEeecC
Q 013856 173 DVEIKGATQQVEVQIKKLYCVSRA 196 (435)
Q Consensus 173 ~~~~~~~t~~lEI~v~~i~vls~~ 196 (435)
+ .+.+++ ||.+|
T Consensus 74 g----------~F~A~e--vLaKh 85 (94)
T 2kct_A 74 D----------TFKART--LMTKC 85 (94)
T ss_dssp S----------EEEEEE--EEESS
T ss_pred C----------EEEEeE--EEEeC
Confidence 1 245554 77787
No 132
>3f1z_A Putative nucleic acid-binding lipoprotein; YP_001337197.1, S genomics, joint center for structural genomics, JCSG; 2.46A {Klebsiella pneumoniae subsp}
Probab=26.12 E-value=97 Score=24.79 Aligned_cols=66 Identities=21% Similarity=0.265 Sum_probs=41.2
Q ss_pred CCCCCEEEEEEEEeeeccCC---CceEEE-EEEeCCeE--EEEEEeeCCCCCCHHHHHHHhcCCCCceEEEEEEEec
Q 013856 101 SLKDQEVLIRGRVHTTRPVG---NKLAFV-VVRERVST--VQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSV 171 (435)
Q Consensus 101 ~~~g~~V~v~GrV~~~R~~G---~kl~Fl-~Lrd~~~~--iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~ 171 (435)
...|+-|.|||-|..+|..+ ..-.|+ ..||...+ -...++-... .| .-+..|..||+..|.|.|..
T Consensus 46 dylgkwvkvrgvivdirrksgiagsyyfivtmrdeqnktdkrltfnfgsh-ns----advealsngsvativgqvhq 117 (133)
T 3f1z_A 46 DYLGKWVKVRGVIVDIRRKSGIAGSYYFIVTMRDEQNKTDKRLTFNFGSH-NS----ADVEALSNGSVATIVGQVHQ 117 (133)
T ss_dssp HHTTCEEEEEEEEEEEEEEECSTTCEEEEEEEECTTCSCSCCEEEEEEGG-GH----HHHTTCCTTSEEEEEEECCC
T ss_pred hhhcceEEEEEEEEEeeeccCccceEEEEEEeeccccCccceEEEeccCC-cc----hhhHhhcCCceeeEeeeeee
Confidence 46799999999999998752 133454 45665321 1122222111 12 23567999999999998854
No 133
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=25.55 E-value=37 Score=27.59 Aligned_cols=59 Identities=20% Similarity=0.300 Sum_probs=36.1
Q ss_pred CCCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEEeeCCCCCCHHHHHHHhcCCCCceEEEEE
Q 013856 101 SLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIG 167 (435)
Q Consensus 101 ~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G 167 (435)
-..|+. +.|.|.++...| +|++|..+ +.+++..+.-..+....+.-..+..||.|.|.=
T Consensus 28 ~~~G~~--~~G~V~~v~~~G---~FV~l~~~---~~Glvhisel~~~~~~~~~~~~~~vGd~V~vkV 86 (115)
T 2khi_A 28 YPEGTK--LTGRVTNLTDYG---CFVEIEEG---VEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMV 86 (115)
T ss_dssp SCSSCE--EEEEEEEEETTE---EEEECSTT---CEEEEETTSSSCSSTTCSSTTTCCTTCEEEEEE
T ss_pred CCCCCE--EEEEEEEEECCE---EEEEECCC---CEEEEEHHHCCccccccCcccEECCCCEEEEEE
Confidence 355774 889999999988 89999543 678887543110000000112477888776643
No 134
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=25.01 E-value=58 Score=28.77 Aligned_cols=56 Identities=14% Similarity=0.191 Sum_probs=32.3
Q ss_pred CCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEEeeCCCCCCHHHHHHH-hcCCCCceEEEE
Q 013856 103 KDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFV-RSLSNESIVDVI 166 (435)
Q Consensus 103 ~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~-~~l~~esiV~V~ 166 (435)
.|+. +.|+|.++...| +|++|-+.. .+.+++..+. ++...+... ..++.|+.|.|.
T Consensus 15 ~G~i--v~G~V~~i~~fG---aFV~L~e~~-gveGLvhiSe--ls~~~v~~~~~~~~vGd~V~vk 71 (175)
T 2a19_A 15 IDDI--VMVNVQQIAEMG---AYVKLLEYD-NIEGMILLSE--LSRRRIRSIQKLIRVGKNDVAV 71 (175)
T ss_dssp TTCE--EEEEEEEEETTE---EEEEETTTT-TCEEEEECC----------CCCCCCCTTSEEEEE
T ss_pred CCCE--EEEEEEEEecce---EEEEEcCCC-CcEEEEEHHH--cCCcccCCHHHcCCCCCEEEEE
Confidence 4664 789999999998 999994222 2678887642 222111111 236667766554
No 135
>1ou9_A Stringent starvation protein B homolog; SSRA peptide-binding protein, homodimer, transport protein; 1.80A {Haemophilus influenzae} SCOP: b.136.1.1 PDB: 1oul_A 1zsz_C
Probab=24.76 E-value=62 Score=27.40 Aligned_cols=54 Identities=20% Similarity=0.330 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHhhcCCeeeecCceeeecCCCCCcceeeecc-CCCceeeccChHHHHhh
Q 013856 250 IQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDY-KGQSACLAQSPQLHKQM 308 (435)
Q Consensus 250 ~rs~i~~~~R~fl~~~gF~EV~TP~l~~~~~egga~~F~~~~-~~~~~~L~~Spql~lq~ 308 (435)
.|--+++++.+|+.++|| ||.|.-.+.-.|..+= ..| .+...-|-+||+-....
T Consensus 8 ~rPYLiRA~yeWi~DN~~----TP~L~Vda~~~~v~VP-~~~v~dGqIVLNIsp~Av~~L 62 (129)
T 1ou9_A 8 KRPYLLRAYYDWLVDNSF----TPYLVVDATYLGVNVP-VEYVKDGQIVLNLSASATGNL 62 (129)
T ss_dssp SHHHHHHHHHHHHHHTTC----CEEEEEETTSTTCBSC-GGGCBTTEEEEECCTTTCEEE
T ss_pred CchHHHHHHHHHHHhCCC----cceEEEEcCCCCCcCC-HHHhcCCEEEEECChhhhcCe
Confidence 366789999999999999 9999776553444421 123 25678888888766653
No 136
>1v1q_A Primosomal replication protein N; primosome, DNA replication, DNA binding; 2.1A {Escherichia coli} SCOP: b.40.4.3 PDB: 2ccz_A
Probab=24.38 E-value=1.3e+02 Score=25.47 Aligned_cols=54 Identities=11% Similarity=0.244 Sum_probs=35.3
Q ss_pred EEEEEEeeCCCCCCHHHHHHHhcCCCCceEEEEEEEecCCccCCCCceeEEEEEeEEEEeec
Q 013856 134 TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSR 195 (435)
Q Consensus 134 ~iQvv~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lEI~v~~i~vls~ 195 (435)
.|+|++-.... + ...+.|.+|+-|.|+|.+.... ...+. ..+.+++.+|..|+.
T Consensus 66 ~i~vv~wGk~A----E--~~~~yl~KGs~V~VeGrL~tr~-~k~G~-kr~~~~a~~i~~l~~ 119 (134)
T 1v1q_A 66 QMPVIVSGHEN----Q--AITHSITVGSRITVQGFISCHK-AKNGL-SKMVLHAEQIELIDS 119 (134)
T ss_dssp EEEEEEESTGG----G--GGGTTCCTTCEEEEEEEEEEEC-TTTTS-CEEEEEEEEEEETTS
T ss_pred EEEEEEEhHHH----H--HHHHhcCCCCEEEEEEEEEEEE-CCCCC-EEEEEEEEEEEECcC
Confidence 48888874311 1 1234599999999999997532 11121 237778999999864
No 137
>2b29_A Replication protein A 70 kDa DNA-binding subunit; 1.60A {Homo sapiens} SCOP: b.40.4.3 PDB: 2b3g_A 1ewi_A
Probab=21.78 E-value=3.4e+02 Score=22.33 Aligned_cols=62 Identities=13% Similarity=0.199 Sum_probs=41.8
Q ss_pred EEEEEeCCeEEEE-EEeeCCCCCCHHHHHHHhcCCCCceEEEEEEEecCCccCCCCceeEEEEEeEEEEeecC
Q 013856 125 FVVVRERVSTVQC-LATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA 196 (435)
Q Consensus 125 Fl~Lrd~~~~iQv-v~~~~~~~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lEI~v~~i~vls~~ 196 (435)
=+.|.||...+|+ |+..... +++. -..|..+++|.+.=.....- + .+.--|.+.++.||.++
T Consensus 46 Rl~lSDG~~~~~~~mLatqln----~~v~-~g~l~~~sIirl~~y~~~~v---~--~~k~vliIl~levl~~~ 108 (123)
T 2b29_A 46 RLLMSDGLNTLSSFMLATQLN----PLVE-EEQLSSNCVCQIHRFIVNTL---K--DGRRVVILMELEVLKSA 108 (123)
T ss_dssp EEEEECSSEEEEEEEECGGGH----HHHH-TTSSCTTCEEEEEEEEEEEC---S--SSCEEEEEEEEEEEECS
T ss_pred EEEEECcchheeeehhHHHHH----HHHh-cCCccCCCEEEEEEEEEEEe---c--CCcEEEEEEeeEEeecc
Confidence 3789999999998 8875321 1221 23699999999976543211 1 02356888899999874
No 138
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=21.65 E-value=2.2e+02 Score=26.84 Aligned_cols=70 Identities=19% Similarity=0.236 Sum_probs=46.0
Q ss_pred ceeEeccccCCCCCCEEEEEEEEeeecc----CC-CceEEEEEEeCC-eEEEEEEeeCCCCCCHHHHHHHhcC-CCCceE
Q 013856 91 EWTEVGALNGSLKDQEVLIRGRVHTTRP----VG-NKLAFVVVRERV-STVQCLATVKPDSVSKEMVRFVRSL-SNESIV 163 (435)
Q Consensus 91 ~~~~i~~l~~~~~g~~V~v~GrV~~~R~----~G-~kl~Fl~Lrd~~-~~iQvv~~~~~~~~~~~~~~~~~~l-~~esiV 163 (435)
.|+.|+++. .|+.|.|.|.|..... .| .-++-+.|.|.+ ..|.|.+..... ..+..+ ..||||
T Consensus 5 ~y~~l~~l~---~~~~vnvigVV~~~~~p~~s~G~d~~~tl~I~D~S~~gl~v~iF~~~~-------~~LP~v~~~GDII 74 (294)
T 1xjv_A 5 IYTPLNQLK---GGTIVNVYGVVKFFKPPYLSKGTDYCSVVTIVDQTNVKLTCLLFSGNY-------EALPIIYKNGDIV 74 (294)
T ss_dssp CCCCGGGCC---SSEEEEEEEEEEEEEEEEECSSSSEEEEEEEECTTCCEEEEEEEESSG-------GGSCCCCSTTCEE
T ss_pred eEEEHHHhh---CCCeeEEEEEEEEcCCCccCCCCeEEEEEEEEcCCCCCEEEEEECCCh-------HHCCCCCCCCCEE
Confidence 355566552 4888999999976543 45 245667778854 348888776421 123445 899999
Q ss_pred EEEEEEe
Q 013856 164 DVIGVVS 170 (435)
Q Consensus 164 ~V~G~v~ 170 (435)
.+..+-.
T Consensus 75 ~l~~vki 81 (294)
T 1xjv_A 75 RFHRLKI 81 (294)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 9998654
No 139
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=20.17 E-value=1.7e+02 Score=23.60 Aligned_cols=53 Identities=11% Similarity=0.155 Sum_probs=34.6
Q ss_pred CCCCEEEEEEEEeeeccCCCceEEEEEEeCCeEEEEEEeeCCCCCCHHHHHHH------hcCCCCceEEEEE
Q 013856 102 LKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFV------RSLSNESIVDVIG 167 (435)
Q Consensus 102 ~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~~~~~~~~~------~~l~~esiV~V~G 167 (435)
..|+. +.|.|.++...| +|++|..+ .+.+++..+ .+..|. ..++.||.|.|.=
T Consensus 20 ~~G~i--~~G~V~~v~~fG---~fV~l~~~--~~~~l~~~~------~~~~~~~~~~~~~~~~~Gd~V~vkV 78 (119)
T 1wi5_A 20 KPGML--LTGTVSSLEDHG---YLVDIGVD--GTRAFLPLL------KAQEYIRQKNKGAKLKVGQYLNCIV 78 (119)
T ss_dssp CTTCE--EEEEEEEECSSE---EEEECCCS--SCEEEEEHH------HHHHHHHHHSSSCCCCTTCEEEEEE
T ss_pred CCCCE--EEEEEEEEeCce---EEEEECCC--CeEEEEEEe------cccccccccCccCEeCCCCEEEEEE
Confidence 45664 789999999998 89999622 234555432 122222 3589999987753
Done!