RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 013856
         (435 letters)



>d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS)
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 353

 Score =  168 bits (426), Expect = 6e-49
 Identities = 130/238 (54%), Positives = 165/238 (69%), Gaps = 7/238 (2%)

Query: 200 PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFR 259
           PI +EDASRSEAE E A      LP VN DTRL+ RVID+RT+ NQ IFRIQ+ V  +FR
Sbjct: 1   PILLEDASRSEAEAEAA-----GLPVVNLDTRLDYRVIDLRTVTNQAIFRIQAGVCELFR 55

Query: 260 QFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFE 319
           ++L ++ F E+HTPKL+   SEGGS+VF + Y    A LAQSPQ +KQ  I  DF RV+E
Sbjct: 56  EYLATKKFTEVHTPKLLGAPSEGGSSVFEVTYFKGKAYLAQSPQFNKQQLIVADFERVYE 115

Query: 320 TGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEA 379
            GPVFRAE+S THRH+ EFTGLD+EM  ++HY EV+D +  LFV IF  L      E+E 
Sbjct: 116 IGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELFVFIFSELPKRFAHEIEL 175

Query: 380 VAKQYPFEPLKYKP--KTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEK 435
           V KQYP E  K     K +RLT++EG++ML+ AG EI    DL+TE+E+ LG+LV +K
Sbjct: 176 VRKQYPVEEFKLPKDGKMVRLTYKEGIEMLRAAGKEIGDFEDLSTENEKFLGKLVRDK 233


>d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS)
           {Thermus thermophilus, AspRS-2 [TaxId: 274]}
          Length = 304

 Score =  124 bits (313), Expect = 3e-33
 Identities = 64/201 (31%), Positives = 105/201 (52%), Gaps = 6/201 (2%)

Query: 235 RVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQ 294
           R + +R    +   ++Q+ +   FR++L  ++F EI TPK++   +EGGS +F +DY  +
Sbjct: 2   RYVTLRGEKARAPLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGSGLFGVDYFEK 61

Query: 295 SACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEV 354
            A LAQSPQ   +  + G F RV+E  PV+R E+ +T RHL E+  LDVEM       ++
Sbjct: 62  RAYLAQSPQ-LYKQIMVGVFERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIADEEDL 120

Query: 355 MDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVEI 414
           M + + L   + +   N    E+  +   +P  P         LT  E  ++LK+  +  
Sbjct: 121 MRLEEALLAEMLEEALNTAGDEIRLLGATWPSFPQDIPR----LTHAEAKRILKE-ELGY 175

Query: 415 DPLGDLNTESERKLGQLVLEK 435
               DL+ E+ER LG+   E+
Sbjct: 176 PVGQDLSEEAERLLGEYAKER 196


>d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase
           (AspRS) {Escherichia coli [TaxId: 562]}
          Length = 346

 Score =  125 bits (314), Expect = 5e-33
 Identities = 44/186 (23%), Positives = 79/186 (42%), Gaps = 4/186 (2%)

Query: 226 VNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSA 285
             ++ RL  R +D+R        + ++++ ++ R+F+    F++I TP L   + EG   
Sbjct: 10  NTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKATPEGARD 69

Query: 286 --VFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDV 343
             V    +KG+   L QSPQL KQ+ +   F R ++    FR ED    R   EFT +DV
Sbjct: 70  YLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQ-PEFTQIDV 128

Query: 344 EMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEG 403
           E        +V ++++ L   ++  +  V   +   +               LR   +  
Sbjct: 129 ETSF-MTAPQVREVMEALVRHLWLEVKGVDLGDFPVMTFAEAERRYGSDKPDLRDESKWA 187

Query: 404 VQMLKD 409
              + D
Sbjct: 188 PLWVID 193


>d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase
           (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]}
          Length = 356

 Score =  124 bits (313), Expect = 8e-33
 Identities = 61/234 (26%), Positives = 90/234 (38%), Gaps = 30/234 (12%)

Query: 200 PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFR 259
           P  ++   R E E E            +++ RL  R +D+R    Q   R++ +V     
Sbjct: 3   PFPVDAGWRGEEEKE-----------ASEELRLKYRYLDLRRRRMQENLRLRHRVIKAIW 51

Query: 260 QFLLSENFVEIHTPKLIAGSSEGGSAVF--RLDYKGQSACLAQSPQLHKQMSICGDFGRV 317
            FL  E FV++ TP L   + EG            G    L QSPQL KQM +     R 
Sbjct: 52  DFLDREGFVQVETPFLTKSTPEGARDFLVPYRHEPGLFYALPQSPQLFKQMLMVAGLDRY 111

Query: 318 FETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKEL 377
           F+    FR ED    R   +FT LD+EM       +V+++ + L   +F     V     
Sbjct: 112 FQIARCFRDEDLRADRQ-PDFTQLDLEMSF-VEVEDVLELNERLMAHVFREALGVELP-- 167

Query: 378 EAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVEID-----PLGDLNTESER 426
                  PF  L Y+    R   ++    L+  G         PL + + E E 
Sbjct: 168 ------LPFPRLSYEEAMERYGSDK--PDLRREGFRFLWVVDFPLLEWDEEEEA 213


>d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS)
           {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
          Length = 335

 Score =  118 bits (297), Expect = 9e-31
 Identities = 73/201 (36%), Positives = 112/201 (55%), Gaps = 4/201 (1%)

Query: 223 LPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEG 282
             +   DTRLNNR +D+R      IF+I+S V    R F     F+EIHTPK+IA ++EG
Sbjct: 9   KVKAELDTRLNNRFMDLRRPEVMAIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATATEG 68

Query: 283 GSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLD 342
           G+ +F + Y  + A LA+SPQL+K++ +     RV+E  P+FRAE+  T RHL E   +D
Sbjct: 69  GTELFPMKYFEEDAFLAESPQLYKEIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWSID 128

Query: 343 VEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEE 402
            EM   +   EVM  ++ L     + +     KEL+       FE  + K    R+++++
Sbjct: 129 SEMAFIEDEEEVMSFLERLVAHAINYVREHNAKELD----ILNFELEEPKLPFPRVSYDK 184

Query: 403 GVQMLKDAGVEIDPLGDLNTE 423
            +++L D G EI    D++TE
Sbjct: 185 ALEILGDLGKEIPWGEDIDTE 205


>d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon
           Pyrococcus furiosus [TaxId: 2261]}
          Length = 293

 Score =  112 bits (280), Expect = 1e-28
 Identities = 32/148 (21%), Positives = 55/148 (37%), Gaps = 10/148 (6%)

Query: 237 IDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTP-------KLIAGSSEGGSAVFRL 289
           ++I +        IQ+++      F + E F  +           L    +  G     +
Sbjct: 3   VEIISREISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEGMEPAEV 62

Query: 290 DYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAED--SYTHRHLCEFTGLDVEMEI 347
           +  G    L  S  LHKQ++I     ++F   P  R E       RH  EFT LD E+E 
Sbjct: 63  EIYGVKMRLTHSMILHKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVER 122

Query: 348 KKHYSEVMDIVDCLFVTIFDSLNNVCKK 375
                ++M +++ L   +F        +
Sbjct: 123 -AKMEDIMRLIERLVYGLFRKAEEWTGR 149


>d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS)
           {Escherichia coli, gene lysU [TaxId: 562]}
          Length = 342

 Score =  106 bits (266), Expect = 2e-26
 Identities = 48/214 (22%), Positives = 90/214 (42%), Gaps = 9/214 (4%)

Query: 228 QDTRLNNRVID-IRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAV 286
           Q+ R   R +D I    ++  F ++S++    RQF+++  F+E+ TP +        +  
Sbjct: 2   QEVRYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARP 61

Query: 287 FR--LDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVE 344
           F    +       L  +P+L+ +  + G F RVFE    FR E   + RH  EFT +++ 
Sbjct: 62  FITHHNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGI-SVRHNPEFTMMELY 120

Query: 345 MEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKEL--EAVAKQYPFEPLKYKPKTLRLTFEE 402
           M    ++ +++++ + LF T+   +    K            PFE L  +    +   E 
Sbjct: 121 MAYADYH-DLIELTESLFRTLAQEVLGTTKVTYGEHVFDFGKPFEKLTMREAIKKYRPET 179

Query: 403 GVQMLKDAGVEIDPLGDLN--TESERKLGQLVLE 434
            +  L +          +    E    LG++V E
Sbjct: 180 DMADLDNFDAAKALAESIGITVEKSWGLGRIVTE 213


>d1eova1 b.40.4.1 (A:71-204) Aspartyl-tRNA synthetase (AspRS)
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 134

 Score = 86.3 bits (213), Expect = 6e-21
 Identities = 51/140 (36%), Positives = 76/140 (54%), Gaps = 13/140 (9%)

Query: 62  NNYGDVPLQELQSVNDPQTGKWSEAVSGREWTEVGAL-NGSLKDQEVLIRGRVHTTRPVG 120
           +NYG +PL  +QS +  +TG        ++  +   L      D+EVL R RVH TR  G
Sbjct: 3   DNYGKLPL--IQSRDSDRTG--------QKRVKFVDLDEAKDSDKEVLFRARVHNTRQQG 52

Query: 121 NKLAFVVVRERVSTVQCLATVK-PDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGA 179
             LAF+ +R++ S +Q L       ++SK MV++  SL+ ESIV V G+V   D  IK A
Sbjct: 53  ATLAFLTLRQQASLIQGLVKANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSA 112

Query: 180 -TQQVEVQIKKLYCVSRAAK 198
             Q +E+ I K+Y +S   +
Sbjct: 113 TVQNLEIHITKIYTISETPE 132


>d1b8aa1 b.40.4.1 (A:1-103) Aspartyl-tRNA synthetase (AspRS)
           {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
          Length = 103

 Score = 52.7 bits (126), Expect = 1e-09
 Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 7/101 (6%)

Query: 96  GALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVR 155
             +   L  Q+V + G V   + +G  + F+ +R+R   VQ   T     V  E+ + + 
Sbjct: 8   SEITEELNGQKVKVAGWVWEVKDLG-GIKFLWIRDRDGIVQI--TAPKKKVDPELFKLIP 64

Query: 156 SLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA 196
            L +E +V V GVV         A    E+  +K+  ++RA
Sbjct: 65  KLRSEDVVAVEGVV----NFTPKAKLGFEILPEKIVVLNRA 101


>d1n9wa1 b.40.4.1 (A:1-93) Aspartyl-tRNA synthetase (AspRS) {Thermus
           thermophilus, AspRS-2 [TaxId: 274]}
          Length = 93

 Score = 49.8 bits (119), Expect = 1e-08
 Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 18/98 (18%)

Query: 104 DQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIV 163
            QEV + G +H  R +G ++ F+++R+R   VQ             +   ++    ES +
Sbjct: 13  GQEVELLGFLHWRRDLG-RIQFLLLRDRSGVVQV------------VTGGLKLPLPESAL 59

Query: 164 DVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKTPI 201
            V G+V    VE   A   +EVQ K++  +S  A  P 
Sbjct: 60  RVRGLV----VENAKAPGGLEVQAKEVEVLSP-ALEPT 92


>d1c0aa1 b.40.4.1 (A:1-106) Aspartyl-tRNA synthetase (AspRS)
           {Escherichia coli [TaxId: 562]}
          Length = 106

 Score = 48.5 bits (115), Expect = 6e-08
 Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 8/104 (7%)

Query: 96  GALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVR 155
           G L  S   Q+V + G V+  R +G  L F+ +R+R   VQ       D    + ++   
Sbjct: 7   GQLRLSHVGQQVTLCGWVNRRRDLG-SLIFIDMRDREGIVQVF----FDPDRADALKLAS 61

Query: 156 SLSNESIVDVIGVVSVPDVEIKG---ATQQVEVQIKKLYCVSRA 196
            L NE  + V G V   D +      AT ++EV    L  ++RA
Sbjct: 62  ELRNEFCIQVTGTVRARDEKNINRDMATGEIEVLASSLTIINRA 105


>d1l0wa1 b.40.4.1 (A:1-104) Aspartyl-tRNA synthetase (AspRS)
           {Thermus thermophilus, AspRS-1 [TaxId: 274]}
          Length = 104

 Score = 44.7 bits (105), Expect = 1e-06
 Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 7/102 (6%)

Query: 96  GALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVR 155
           G+L  +   +EV++ G V+  R +G  L F+ +R+R   VQ      P S +      VR
Sbjct: 8   GSLRETHVGEEVVLEGWVNRRRDLG-GLIFLDLRDREGLVQL--VAHPASPAYATAERVR 64

Query: 156 SLSNESIVDVIGV-VSVPDVEIKGATQQVEVQIKKLYCVSRA 196
               E +V   G+    P+   + AT +VEV++  L  ++ A
Sbjct: 65  ---PEWVVRAKGLVRLRPEPNPRLATGRVEVELSALEVLAEA 103


>d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 90

 Score = 30.4 bits (68), Expect = 0.082
 Identities = 13/39 (33%), Positives = 17/39 (43%)

Query: 9  KVQEEVDSSSQSISKKAAKKEAAKKAKEERRKEAEAAAS 47
           +        +  SKK AK  AAK A E   KE +A + 
Sbjct: 51 IIDGREFPEGEGRSKKEAKNAAAKLAVEILNKEKKAVSP 89


>d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 85

 Score = 27.3 bits (60), Expect = 1.1
 Identities = 8/26 (30%), Positives = 12/26 (46%)

Query: 9  KVQEEVDSSSQSISKKAAKKEAAKKA 34
           +      S  + SKK AK +AA+  
Sbjct: 46 TIDGVTYGSGTASSKKLAKNKAARAT 71


>d1eucb1 c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta-chain,
           C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
          Length = 148

 Score = 27.1 bits (60), Expect = 3.0
 Identities = 20/92 (21%), Positives = 35/92 (38%), Gaps = 7/92 (7%)

Query: 335 LCEFTGLDVEMEIKKHYSEVMDI--VDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKYK 392
             +  G   E ++ + +  +     V+ + V IF  + N C      + K      LK  
Sbjct: 48  FLDLGGGVKESQVYQAFKLLTADPKVEAILVNIFGGIVN-CAIIANGITKACRELELK-V 105

Query: 393 PKTLRLT---FEEGVQMLKDAGVEIDPLGDLN 421
           P  +RL      E   +L ++G+ I    DL 
Sbjct: 106 PLVVRLEGTNVHEAQNILTNSGLPITSAVDLE 137


>d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain
          {Thermotoga maritima [TaxId: 2336]}
          Length = 69

 Score = 24.8 bits (54), Expect = 5.7
 Identities = 9/26 (34%), Positives = 17/26 (65%)

Query: 9  KVQEEVDSSSQSISKKAAKKEAAKKA 34
          +V  +  ++ +  +KK A+KEAA+ A
Sbjct: 39 RVNGKTIATGKGRTKKEAEKEAARIA 64


>d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain
          {Aquifex aeolicus [TaxId: 63363]}
          Length = 68

 Score = 24.6 bits (53), Expect = 6.5
 Identities = 6/13 (46%), Positives = 10/13 (76%)

Query: 22 SKKAAKKEAAKKA 34
          SKK A++ AA++ 
Sbjct: 51 SKKEAEQRAAEEL 63


>d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr
          {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 85

 Score = 25.0 bits (54), Expect = 6.6
 Identities = 8/28 (28%), Positives = 13/28 (46%)

Query: 22 SKKAAKKEAAKKAKEERRKEAEAAASAA 49
          SK+ A+  AAK A +    E +     +
Sbjct: 58 SKQEARNAAAKLAVDILDNENKVDCHTS 85


>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
          Length = 493

 Score = 26.5 bits (58), Expect = 7.2
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 7/50 (14%)

Query: 339 TGLDVEMEIKKHYSEVMD-IVDCLFVTIFDS---LNNVCKKELEAVAKQY 384
           TGL+ E ++   Y E++D I + L   I  S   L  V ++ELE V +Q+
Sbjct: 438 TGLEHE-KLLDEYKELLDQIAELL--RILGSADRLMEVIREELELVREQF 484


>d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 89

 Score = 24.8 bits (53), Expect = 7.5
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 9  KVQEEVDSSSQSISKKAAKKEAAKKAKEERRKE 41
          K+ ++  S     +K+ AK+ AAK A  +   E
Sbjct: 51 KMGQKEYSIGTGSTKQEAKQLAAKLAYLQILSE 83


>d3c8ya1 c.96.1.1 (A:210-574) Fe-only hydrogenase, catalytic domain
           {Clostridium pasteurianum [TaxId: 1501]}
          Length = 365

 Score = 26.1 bits (57), Expect = 8.5
 Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 8/75 (10%)

Query: 347 IKKHYSEVMDIV--DCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGV 404
            K +Y  +  +   +   VT+        KK     A +   E    +     +T  E  
Sbjct: 123 SKTYYPSISGLDPKNVFTVTVMPC---TSKK---FEADRPQMEKDGLRDIDAVITTRELA 176

Query: 405 QMLKDAGVEIDPLGD 419
           +M+KDA +    L D
Sbjct: 177 KMIKDAKIPFAKLED 191


>d1jmca2 b.40.4.3 (A:299-420) Replication protein A 70 KDa subunit
           (RPA70) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 122

 Score = 25.2 bits (55), Expect = 9.2
 Identities = 16/78 (20%), Positives = 28/78 (35%), Gaps = 13/78 (16%)

Query: 154 VRSLSNESIVDVIGVV-SVPDV-EIKGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEA 211
           + + S +S+VD+IG+  S  D  +I   +   EV            K  I + D S    
Sbjct: 10  LENKSKDSLVDIIGICKSYEDATKITVRSNNREVA-----------KRNIYLMDTSGKVV 58

Query: 212 EIEKASKEGVQLPRVNQD 229
                 ++  +     Q 
Sbjct: 59  TATLWGEDADKFDGSRQP 76


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.130    0.357 

Gapped
Lambda     K      H
   0.267   0.0557    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,486,466
Number of extensions: 68908
Number of successful extensions: 198
Number of sequences better than 10.0: 1
Number of HSP's gapped: 187
Number of HSP's successfully gapped: 36
Length of query: 435
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 347
Effective length of database: 1,199,356
Effective search space: 416176532
Effective search space used: 416176532
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.0 bits)