BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013857
(435 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255560950|ref|XP_002521488.1| tRNA-pseudouridine synthase, putative [Ricinus communis]
gi|223539387|gb|EEF40978.1| tRNA-pseudouridine synthase, putative [Ricinus communis]
Length = 513
Score = 557 bits (1435), Expect = e-156, Method: Compositional matrix adjust.
Identities = 282/432 (65%), Positives = 325/432 (75%), Gaps = 31/432 (7%)
Query: 11 ITSSRTLSLLLPPPL--------KDNFIKKNVYLLSTKAFSSSITSTPYPLQYDMIINNP 62
+ S +L LLP P K + + L S S STPYP QYDMII+ P
Sbjct: 1 MAKSLSLLFLLPKPTFCPILLSSKPKSLNRACILSSLSRTLFSTVSTPYPFQYDMIISRP 60
Query: 63 TQPQQSQTRRRPARVNSTNSDENQNPDGELGFDSWVDKKLEKEAKTRQPGSDNAEMTKSM 122
+Q Q Q+R +PARV +SD + P+ ELG DSWVD+KL M KS
Sbjct: 61 SQSQPPQSRSQPARVTKDDSDCSPEPESELGLDSWVDQKLS--------------MDKSK 106
Query: 123 RKYYNKRRQRMYGTDSEDEYGKNDDGFVELKPEVVEFNRLHKREEELYFYDTFAYPWEKD 182
RKYYNKRR+RMYG+DS+D+ D+GFVELKPEV F LHKREEELY YDTFAYPWEKD
Sbjct: 107 RKYYNKRRKRMYGSDSDDDTRNKDEGFVELKPEVAHFGSLHKREEELYMYDTFAYPWEKD 166
Query: 183 KHYKMVYQLEKKYFPDQCLDKAFLDP-----SADQNVKKMRKKAGGKSEEKKYNKEDDKR 237
KHYKMVYQLEKKYFPDQC DKAFLD S +++VK+ K+ + ++E+DK
Sbjct: 167 KHYKMVYQLEKKYFPDQCFDKAFLDHKDSNFSKNESVKRSSKRVVKRDTNGVGDREEDKG 226
Query: 238 LVFFDDQEKKSEKDSILGEDVNVKGEVSEKKVEEFFKCLKKVPNKENEVGSGEPYIVSRS 297
LVFF++++ + E +S + NV +V+E+KVEEFFKCLKKVPNK+NE+ +GEPY+V+RS
Sbjct: 227 LVFFEEEKAEIESNS----EKNVAKDVTERKVEEFFKCLKKVPNKKNEIDTGEPYLVTRS 282
Query: 298 TELPPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVG 357
TELPP WD GT+VLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVG
Sbjct: 283 TELPPRWDDTHGTVVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVG 342
Query: 358 KATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEI 417
KATK+VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASF GEI
Sbjct: 343 KATKVVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFCGEI 402
Query: 418 WQVPPMFSAIKV 429
WQVPPMFSAIKV
Sbjct: 403 WQVPPMFSAIKV 414
>gi|449532619|ref|XP_004173278.1| PREDICTED: uncharacterized LOC101215528, partial [Cucumis sativus]
Length = 517
Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust.
Identities = 282/448 (62%), Positives = 334/448 (74%), Gaps = 33/448 (7%)
Query: 2 SLLLLRPKLITSSRTLSLLLPPPLKDNF----IKKNVYLLSTKAFSSSITSTPYPLQYDM 57
S +R L+ SS++LSL LP ++ + ++ LS + FS T+T +PLQY++
Sbjct: 11 SHFFIRSTLMPSSKSLSLFLPLSNLNHLHRFAFRNSLSPLSLRTFS---TTTLFPLQYEL 67
Query: 58 IINNPTQPQQ-SQTRRRPARVNSTNSDE---NQNPDGELGFDSWVDKKLEKEAKTRQPGS 113
IIN P+ P Q R PARV+S NS E +++P ELGFDSWVD+KL E T G
Sbjct: 68 IINRPSYPSPPHQNPRTPARVSSDNSPELNSSEDPTSELGFDSWVDRKLISEGGTVS-GK 126
Query: 114 DNAEMTKSMRKYYNKRRQRMYGTDSEDEYGKNDDGFVELKPEVVEFNRLHKREEELYFYD 173
+ M K+MRKYYNKRR+RMYG+DS+++ +GFVELKPEVVEFN LHKREEEL+F+D
Sbjct: 127 EGVVMDKAMRKYYNKRRKRMYGSDSDEDNRTQAEGFVELKPEVVEFNTLHKREEELFFHD 186
Query: 174 TFAYPWEKDKHYKMVYQLEKKYFPDQCLDKAFLDPSADQNV--------KKMRKKAGGKS 225
FAYPWEKDKHYKM+YQLEKKYFPD LDKAFL P + NV ++ +KAG
Sbjct: 187 AFAYPWEKDKHYKMLYQLEKKYFPDDGLDKAFLGP-GESNVEVNEQTKGRQGVRKAGRVK 245
Query: 226 EEKKY---NKEDDKRLVFFDD-QEKKSEKDSILGEDVNVKGEVSEKKVEEFFKCLKKVPN 281
E N DDKR+VFFD+ + +K K S++ +VSEKKVEEFFKCLKK P
Sbjct: 246 PEMNVEVANGMDDKRMVFFDEGKPEKENKGSVV--------DVSEKKVEEFFKCLKKGPA 297
Query: 282 KENEVGSGEPYIVSRSTELPPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHA 341
K++ +G GEPY+++R ELP WD P GT+VL+NKPKGWTSFTVCGKLRRLVKVKKVGHA
Sbjct: 298 KDSNIGQGEPYLLTRHMELPAKWDSPCGTVVLLNKPKGWTSFTVCGKLRRLVKVKKVGHA 357
Query: 342 GTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHI 401
GTLDPMATGLLIVCVGKATKLVDRYQGMIK YSGVFRLGEATSTWDADSPVIQREPWEHI
Sbjct: 358 GTLDPMATGLLIVCVGKATKLVDRYQGMIKSYSGVFRLGEATSTWDADSPVIQREPWEHI 417
Query: 402 KDEDIRKAAASFRGEIWQVPPMFSAIKV 429
KD+DI+KAAASF GEIWQVPPMFSAIKV
Sbjct: 418 KDDDIQKAAASFCGEIWQVPPMFSAIKV 445
>gi|449450185|ref|XP_004142844.1| PREDICTED: uncharacterized protein LOC101215528 [Cucumis sativus]
Length = 544
Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust.
Identities = 282/448 (62%), Positives = 334/448 (74%), Gaps = 33/448 (7%)
Query: 2 SLLLLRPKLITSSRTLSLLLPPPLKDNF----IKKNVYLLSTKAFSSSITSTPYPLQYDM 57
S +R L+ SS++LSL LP ++ + ++ LS + FS T+T +PLQY++
Sbjct: 11 SHFFIRSTLMPSSKSLSLFLPLSNLNHLHRFAFRNSLSPLSLRTFS---TTTLFPLQYEL 67
Query: 58 IINNPTQPQQ-SQTRRRPARVNSTNSDE---NQNPDGELGFDSWVDKKLEKEAKTRQPGS 113
IIN P+ P Q R PARV+S NS E +++P ELGFDSWVD+KL E T G
Sbjct: 68 IINRPSYPSPPHQNPRTPARVSSDNSPELNSSEDPTSELGFDSWVDRKLISEGGTVS-GK 126
Query: 114 DNAEMTKSMRKYYNKRRQRMYGTDSEDEYGKNDDGFVELKPEVVEFNRLHKREEELYFYD 173
+ M K+MRKYYNKRR+RMYG+DS+++ +GFVELKPEVVEFN LHKREEEL+F+D
Sbjct: 127 EGVVMDKAMRKYYNKRRKRMYGSDSDEDNRTQAEGFVELKPEVVEFNTLHKREEELFFHD 186
Query: 174 TFAYPWEKDKHYKMVYQLEKKYFPDQCLDKAFLDPSADQNV--------KKMRKKAGGKS 225
FAYPWEKDKHYKM+YQLEKKYFPD LDKAFL P + NV ++ +KAG
Sbjct: 187 AFAYPWEKDKHYKMLYQLEKKYFPDDGLDKAFLGP-GESNVEVNEQTKGRQGVRKAGRVK 245
Query: 226 EEKKY---NKEDDKRLVFFDD-QEKKSEKDSILGEDVNVKGEVSEKKVEEFFKCLKKVPN 281
E N DDKR+VFFD+ + +K K S++ +VSEKKVEEFFKCLKK P
Sbjct: 246 PEMNVEVANGMDDKRMVFFDEGKPEKENKGSVV--------DVSEKKVEEFFKCLKKGPA 297
Query: 282 KENEVGSGEPYIVSRSTELPPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHA 341
K++ +G GEPY+++R ELP WD P GT+VL+NKPKGWTSFTVCGKLRRLVKVKKVGHA
Sbjct: 298 KDSNIGQGEPYLLTRHMELPAKWDSPCGTVVLLNKPKGWTSFTVCGKLRRLVKVKKVGHA 357
Query: 342 GTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHI 401
GTLDPMATGLLIVCVGKATKLVDRYQGMIK YSGVFRLGEATSTWDADSPVIQREPWEHI
Sbjct: 358 GTLDPMATGLLIVCVGKATKLVDRYQGMIKSYSGVFRLGEATSTWDADSPVIQREPWEHI 417
Query: 402 KDEDIRKAAASFRGEIWQVPPMFSAIKV 429
KD+DI+KAAASF GEIWQVPPMFSAIKV
Sbjct: 418 KDDDIQKAAASFCGEIWQVPPMFSAIKV 445
>gi|297811569|ref|XP_002873668.1| hypothetical protein ARALYDRAFT_488288 [Arabidopsis lyrata subsp.
lyrata]
gi|297319505|gb|EFH49927.1| hypothetical protein ARALYDRAFT_488288 [Arabidopsis lyrata subsp.
lyrata]
Length = 538
Score = 525 bits (1353), Expect = e-146, Method: Compositional matrix adjust.
Identities = 279/452 (61%), Positives = 333/452 (73%), Gaps = 36/452 (7%)
Query: 1 MSLLLLRPKLITSSRTLSLLLPPPLKDNFIK--KNVYLLSTKAFSSSITSTPYPLQYDMI 58
M+ L +LI SS + + + L + +K +N++ + S TST YPLQYDMI
Sbjct: 1 MAKALHFTRLIMSSSSARMCMTSSLFFSSVKPRRNIHKPYLASLFLSTTSTRYPLQYDMI 60
Query: 59 INNPTQPQQSQTRRRPARVNSTNSDENQNPDGELGFDSWVDKKLEKEAKTRQPGSDNAEM 118
IN PTQ SQTRRRP + + + ++ P+ FDSWVD KL E + +PGS + EM
Sbjct: 61 INRPTQSSLSQTRRRPPKAIESGAPDSAEPE----FDSWVDNKLALEREQGRPGSGDPEM 116
Query: 119 TKSMRKYYNKRRQRMYGTDSEDEYG-KNDDGFVELKPEVVEFNRLHKREEELYFYDTFAY 177
K+ RKYY+KRR+R+YG+DSEDE K+D+GFVELKP+VVEF+RLH+REEELYFYDTFAY
Sbjct: 117 DKAKRKYYSKRRKRLYGSDSEDESRRKSDEGFVELKPQVVEFDRLHQREEELYFYDTFAY 176
Query: 178 PWEKDKHYKMVYQLEKKYFPDQCLDKAFLDPS-----ADQNVKKMRKK------AGGKSE 226
PWEKDKHYKMVYQLEKKY+PDQCLDKAFL P D + K+R K GGK
Sbjct: 177 PWEKDKHYKMVYQLEKKYYPDQCLDKAFLQPGEVSKKGDDDSGKVRGKKKVVAALGGKRN 236
Query: 227 EKKYNK-----EDDKRLVFFDD-QEKKSEKDSILGEDVNVKGEVSEKKVEEFFKCLKKVP 280
E K EDD +LVFFD+ +EKK +D ++ V+EKKVE+FFK L K P
Sbjct: 237 EVKRMGMENCVEDDDKLVFFDEVKEKKKPEDDVV---------VTEKKVEQFFKDLTKSP 287
Query: 281 NKENEV---GSGEPYIVSRSTELPPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKK 337
+++ G GEP++V+R+ ELPP WDGP GT++LVNKPKGWTSFTVCGKLRRLVKVKK
Sbjct: 288 SEKGVTSGGGDGEPFLVTRNGELPPRWDGPNGTVLLVNKPKGWTSFTVCGKLRRLVKVKK 347
Query: 338 VGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREP 397
VGHAGTLDPMATGLLIVC+GKATK+VDRYQGMIK YSGVFRLGEATST DADSPVIQREP
Sbjct: 348 VGHAGTLDPMATGLLIVCIGKATKVVDRYQGMIKCYSGVFRLGEATSTLDADSPVIQREP 407
Query: 398 WEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
WEHIKD+DI+KA SF GEIWQVPPMFSAIKV
Sbjct: 408 WEHIKDDDIKKALTSFLGEIWQVPPMFSAIKV 439
>gi|225452300|ref|XP_002272379.1| PREDICTED: uncharacterized protein LOC100259460 [Vitis vinifera]
Length = 520
Score = 504 bits (1297), Expect = e-140, Method: Compositional matrix adjust.
Identities = 277/440 (62%), Positives = 323/440 (73%), Gaps = 39/440 (8%)
Query: 1 MSLLLLRPKLITSSRTLSLLLPPPLKDNFIKKNVY--LLSTKAFSSSITSTPYPLQYDMI 58
+SLL RPK TLSL PP + + + L ST TSTP+PLQYDMI
Sbjct: 10 VSLLFFRPK-----PTLSLFFKPPSLRLLTRPSSFPHLFST-------TSTPHPLQYDMI 57
Query: 59 INNPTQPQQSQTRRRPARVNSTNSDENQNPDGEL----GFDSWVDKKLEKEAKTRQPGSD 114
I+ P QP + RR NS N +PD E GF++WVD+KL GSD
Sbjct: 58 ISRPAQPPPPRPRR--RLTPLPNSKPNDSPDAESPDSEGFENWVDRKLS--------GSD 107
Query: 115 NAEMTKSMRKYYNKRRQRMYGTDSEDEYGKNDDGFVELKPEVVEFNRLHKREEELYFYDT 174
+ +M K+ RKYYNKRR+RMYG+DS+++ G + +VELK EVVE LHK+EEELYFYD
Sbjct: 108 DLQMDKAKRKYYNKRRKRMYGSDSDEDGGAAQEKYVELKQEVVELRTLHKKEEELYFYDA 167
Query: 175 FAYPWEKDKHYKMVYQLEKKYFPDQCLDKAFLDP-----SADQNVKKMRKKAGGKSEEKK 229
FAYPWEK+KHYKMVYQLEKKYFPD CLDKAFL+P SA+ K + GG+ E+
Sbjct: 168 FAYPWEKEKHYKMVYQLEKKYFPDHCLDKAFLEPGETNESANNAKAKKKVGKGGEKREEI 227
Query: 230 YNKEDDKRLVFFDDQEKKSEKDSILGEDVNVKGEVSEKKVEEFFKCLKKVPNKENEVGSG 289
+ DDK LVFF+ + K EK S+ ++ E+SEKKVEEFFKCLKKVPNK+ E G
Sbjct: 228 GDGGDDKGLVFFEGE--KDEKVSVSAKE----KELSEKKVEEFFKCLKKVPNKDVEGDRG 281
Query: 290 EPYIVSRSTELPPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMAT 349
EPY V+RS+ELPP WDGP GT+VL+NKPKGWTSFTVCGKLRRLV+VKKVGHAGTLDPMAT
Sbjct: 282 EPYFVTRSSELPPRWDGPSGTVVLINKPKGWTSFTVCGKLRRLVQVKKVGHAGTLDPMAT 341
Query: 350 GLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKA 409
GLLIVCVGKATKLV+ YQGM+KGYSG+FRLGEATSTWDADSPVIQREPWEHIKDE+I+K
Sbjct: 342 GLLIVCVGKATKLVESYQGMVKGYSGIFRLGEATSTWDADSPVIQREPWEHIKDENIKKT 401
Query: 410 AASFRGEIWQVPPMFSAIKV 429
AASF GEIWQVPPMFSAIKV
Sbjct: 402 AASFCGEIWQVPPMFSAIKV 421
>gi|7573471|emb|CAB87785.1| tRNA synthase-like protein [Arabidopsis thaliana]
Length = 540
Score = 503 bits (1295), Expect = e-140, Method: Compositional matrix adjust.
Identities = 277/441 (62%), Positives = 325/441 (73%), Gaps = 28/441 (6%)
Query: 9 KLITSSRTLSLLLPPPLKDNFIKKNVYLLSTKAFSSSITSTPYPLQYDMIINNPTQPQQS 68
+L++SS +S+ P +N++ + S TST YPLQYDMIIN PTQ S
Sbjct: 9 RLMSSSARMSMTSPLFFSSVKPWRNIHKPYLASLFLSTTSTRYPLQYDMIINRPTQSSLS 68
Query: 69 QTRRRPARVNSTNSDENQNPDGELGFDSWVDKKLEKEAKTRQPGSDNAEMTKSMRKYYNK 128
Q RRRP + + + ++ P+ FDSWVD KL E + +PGS + EM K+ RKYY+K
Sbjct: 69 QNRRRPPKAIESGAPDSAEPE----FDSWVDNKLAMEREQGRPGSGDPEMDKAKRKYYSK 124
Query: 129 RRQRMYGTDSEDEYG--KNDDGFVELKPEVVEFNRLHKREEELYFYDTFAYPWEKDKHYK 186
RR+R+YG+DSEDE K+D+GFVELKPEVVEF+RLH+REEELYFYDTFAYPWEKDKHYK
Sbjct: 125 RRKRLYGSDSEDETSSRKSDEGFVELKPEVVEFDRLHQREEELYFYDTFAYPWEKDKHYK 184
Query: 187 MVYQLEKKYFPDQCLDKAFLDP------SADQNVKKMRKKA----GGKSEEKKY-----N 231
MVYQLEKKY+PDQCLDKAFL P S D + +KK GGK E K
Sbjct: 185 MVYQLEKKYYPDQCLDKAFLQPGEVLKKSDDSGKVRGKKKVVAALGGKRSEVKRIGMENC 244
Query: 232 KEDDKRLVFFDDQEKKSEKDSILGEDVNVKGEVSEKKVEEFFKCLKKVPNKENEV---GS 288
EDD +LVFFD+ ++K EK + V+EKKVE+FFK L K PN++ G
Sbjct: 245 DEDDDKLVFFDEVKEKEEKKKS----EDDVVVVTEKKVEQFFKGLTKSPNEKGMASGGGD 300
Query: 289 GEPYIVSRSTELPPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMA 348
GEP++V+R+ ELPP WDGP GT++LVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMA
Sbjct: 301 GEPFLVTRNGELPPRWDGPNGTVLLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMA 360
Query: 349 TGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRK 408
TGLLIVCVGKATK+VDRYQGMIKGYSGVFRLGEATST DADSPVIQRE WEHIKD+DI+K
Sbjct: 361 TGLLIVCVGKATKVVDRYQGMIKGYSGVFRLGEATSTLDADSPVIQRESWEHIKDDDIKK 420
Query: 409 AAASFRGEIWQVPPMFSAIKV 429
A SF GEIWQVPPMFSAIKV
Sbjct: 421 ALTSFLGEIWQVPPMFSAIKV 441
>gi|186522847|ref|NP_196950.2| tRNA pseudouridine synthase B [Arabidopsis thaliana]
gi|110741670|dbj|BAE98781.1| tRNA synthase - like protein [Arabidopsis thaliana]
gi|332004654|gb|AED92037.1| tRNA pseudouridine synthase B [Arabidopsis thaliana]
Length = 540
Score = 503 bits (1295), Expect = e-140, Method: Compositional matrix adjust.
Identities = 277/441 (62%), Positives = 325/441 (73%), Gaps = 28/441 (6%)
Query: 9 KLITSSRTLSLLLPPPLKDNFIKKNVYLLSTKAFSSSITSTPYPLQYDMIINNPTQPQQS 68
+L++SS +S+ P +N++ + S TST YPLQYDMIIN PTQ S
Sbjct: 9 RLMSSSARMSMTSPLFFSSVKPWRNIHKPYLASLFLSTTSTRYPLQYDMIINRPTQSSLS 68
Query: 69 QTRRRPARVNSTNSDENQNPDGELGFDSWVDKKLEKEAKTRQPGSDNAEMTKSMRKYYNK 128
Q RRRP + + + ++ P+ FDSWVD KL E + +PGS + EM K+ RKYY+K
Sbjct: 69 QNRRRPPKAIESGAPDSAEPE----FDSWVDNKLAMEREQGRPGSGDPEMDKAKRKYYSK 124
Query: 129 RRQRMYGTDSEDEYG--KNDDGFVELKPEVVEFNRLHKREEELYFYDTFAYPWEKDKHYK 186
RR+R+YG+DSEDE K+D+GFVELKPEVVEF+RLH+REEELYFYDTFAYPWEKDKHYK
Sbjct: 125 RRKRLYGSDSEDENSSRKSDEGFVELKPEVVEFDRLHQREEELYFYDTFAYPWEKDKHYK 184
Query: 187 MVYQLEKKYFPDQCLDKAFLDP------SADQNVKKMRKKA----GGKSEEKKY-----N 231
MVYQLEKKY+PDQCLDKAFL P S D + +KK GGK E K
Sbjct: 185 MVYQLEKKYYPDQCLDKAFLQPGEVLKKSDDSGKVRGKKKVVAALGGKRSEVKRIGMENC 244
Query: 232 KEDDKRLVFFDDQEKKSEKDSILGEDVNVKGEVSEKKVEEFFKCLKKVPNKENEV---GS 288
EDD +LVFFD+ ++K EK + V+EKKVE+FFK L K PN++ G
Sbjct: 245 DEDDDKLVFFDEVKEKEEKKKS----EDDVVVVTEKKVEQFFKGLTKSPNEKGMASGGGD 300
Query: 289 GEPYIVSRSTELPPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMA 348
GEP++V+R+ ELPP WDGP GT++LVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMA
Sbjct: 301 GEPFLVTRNGELPPRWDGPNGTVLLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMA 360
Query: 349 TGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRK 408
TGLLIVCVGKATK+VDRYQGMIKGYSGVFRLGEATST DADSPVIQRE WEHIKD+DI+K
Sbjct: 361 TGLLIVCVGKATKVVDRYQGMIKGYSGVFRLGEATSTLDADSPVIQRESWEHIKDDDIKK 420
Query: 409 AAASFRGEIWQVPPMFSAIKV 429
A SF GEIWQVPPMFSAIKV
Sbjct: 421 ALTSFLGEIWQVPPMFSAIKV 441
>gi|296087588|emb|CBI34844.3| unnamed protein product [Vitis vinifera]
Length = 502
Score = 502 bits (1292), Expect = e-139, Method: Compositional matrix adjust.
Identities = 273/435 (62%), Positives = 318/435 (73%), Gaps = 47/435 (10%)
Query: 1 MSLLLLRPKLITSSRTLSLLLPPPLKDNFIKKNVY--LLSTKAFSSSITSTPYPLQYDMI 58
+SLL RPK TLSL PP + + + L ST TSTP+PLQYDMI
Sbjct: 10 VSLLFFRPK-----PTLSLFFKPPSLRLLTRPSSFPHLFST-------TSTPHPLQYDMI 57
Query: 59 INNPTQPQQSQTRRRPARVNSTNSDENQNPDGEL----GFDSWVDKKLEKEAKTRQPGSD 114
I+ P QP + RR NS N +PD E GF++WVD+KL GSD
Sbjct: 58 ISRPAQPPPPRPRR--RLTPLPNSKPNDSPDAESPDSEGFENWVDRKLS--------GSD 107
Query: 115 NAEMTKSMRKYYNKRRQRMYGTDSEDEYGKNDDGFVELKPEVVEFNRLHKREEELYFYDT 174
+ +M K+ RKYYNKRR+RMYG+DS+++ G + +VELK EVVE LHK+EEELYFYD
Sbjct: 108 DLQMDKAKRKYYNKRRKRMYGSDSDEDGGAAQEKYVELKQEVVELRTLHKKEEELYFYDA 167
Query: 175 FAYPWEKDKHYKMVYQLEKKYFPDQCLDKAFLDPSADQNVKKMRKKAGGKSEEKKYNKED 234
FAYPWEK+KHYKMVYQLEKKYFPD CLDKAFL+P G +E++ + D
Sbjct: 168 FAYPWEKEKHYKMVYQLEKKYFPDHCLDKAFLEP-------------GETNEKEIGDGGD 214
Query: 235 DKRLVFFDDQEKKSEKDSILGEDVNVKGEVSEKKVEEFFKCLKKVPNKENEVGSGEPYIV 294
DK LVFF+ + K EK S+ ++ E+SEKKVEEFFKCLKKVPNK+ E GEPY V
Sbjct: 215 DKGLVFFEGE--KDEKVSVSAKE----KELSEKKVEEFFKCLKKVPNKDVEGDRGEPYFV 268
Query: 295 SRSTELPPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIV 354
+RS+ELPP WDGP GT+VL+NKPKGWTSFTVCGKLRRLV+VKKVGHAGTLDPMATGLLIV
Sbjct: 269 TRSSELPPRWDGPSGTVVLINKPKGWTSFTVCGKLRRLVQVKKVGHAGTLDPMATGLLIV 328
Query: 355 CVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFR 414
CVGKATKLV+ YQGM+KGYSG+FRLGEATSTWDADSPVIQREPWEHIKDE+I+K AASF
Sbjct: 329 CVGKATKLVESYQGMVKGYSGIFRLGEATSTWDADSPVIQREPWEHIKDENIKKTAASFC 388
Query: 415 GEIWQVPPMFSAIKV 429
GEIWQVPPMFSAIKV
Sbjct: 389 GEIWQVPPMFSAIKV 403
>gi|356511706|ref|XP_003524564.1| PREDICTED: uncharacterized protein LOC100793939 [Glycine max]
Length = 485
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 240/390 (61%), Positives = 273/390 (70%), Gaps = 51/390 (13%)
Query: 45 SITSTPYPLQYDMIINNPTQPQQSQTRRRPARVNSTNSDENQNPDGELGFDSWVDKKLEK 104
S T TPYPLQY++IIN P+ P RP +S E
Sbjct: 43 STTPTPYPLQYELIINRPSYPDSP----RPPPARPIDSPE-------------------- 78
Query: 105 EAKTRQPGSDNAEMTKSMRKYYNKRRQRMYGTDSEDEYGKNDDGFVELKPEVVEFNRLHK 164
E+ K+ RKYYNKRR+RMYG+D EDE + D+ FVELKPEVV+F LHK
Sbjct: 79 -----------PELNKAQRKYYNKRRKRMYGSD-EDESRRPDETFVELKPEVVDFPTLHK 126
Query: 165 REEELYFYDTFAYPWEKDKHYKMVYQLEKKYFPDQCLDKAFLDPS-ADQNVKKMRKKAGG 223
REEELYFYD F YPWEKDKHYKMVYQLEKKYFPDQCLDKAFL P ++ N K
Sbjct: 127 REEELYFYDAFTYPWEKDKHYKMVYQLEKKYFPDQCLDKAFLQPGQSNANANGKGKGR-- 184
Query: 224 KSEEKKYNKEDDKRLVFFDDQ--EKKSEKDSILGEDVNVKGEVSEKKVEEFFKCLKK--V 279
++ +++LVFF++ E+K E E + ++ EKKVE+FFK LKK
Sbjct: 185 --KKVVGGGGGEEKLVFFEEGNVEEKGE------ESGSGSRQLKEKKVEDFFKGLKKDPS 236
Query: 280 PNKENEVGSGEPYIVSRSTELPPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVG 339
P+ +V GEP++ SR T LPP WD P GT++LVNKPKGWTSFTVCGKLRRLVKVKKVG
Sbjct: 237 PSLNKDVQVGEPFLSSRRTGLPPVWDTPHGTVLLVNKPKGWTSFTVCGKLRRLVKVKKVG 296
Query: 340 HAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWE 399
HAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWE
Sbjct: 297 HAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWE 356
Query: 400 HIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
HIKDEDI++ A SF GEIWQVPPMFSAIKV
Sbjct: 357 HIKDEDIKRNALSFSGEIWQVPPMFSAIKV 386
>gi|413942368|gb|AFW75017.1| pseudouridylate synthase/ transporter [Zea mays]
Length = 497
Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust.
Identities = 219/407 (53%), Positives = 257/407 (63%), Gaps = 68/407 (16%)
Query: 45 SITSTPYPLQYDMIINNPTQPQQSQTRRRPARVNSTNSDENQNPDGE-LGFDSWVDKKLE 103
S+T+T YPL YD+I++ P P P + ++ +D P E D + L
Sbjct: 38 SLTATRYPLYYDLIVHRPADPN-------PPKSSAAGADRQPQPAPEEQTLDRAKRRYLR 90
Query: 104 KEAKTRQPGSDNAEMTKSMRKYYNKRRQRMYGTDSEDEYGKNDDGFVELKPEVVEFNRLH 163
K P D TK SE FVEL+PEVV+F RLH
Sbjct: 91 KRRSRLLPDPDATTTTKPS------------SLSSE---------FVELRPEVVDFPRLH 129
Query: 164 KREEELYFYDTFAYPWEKDKHYKMVYQLEKKYFPDQCLDKAFLDPSADQNVKKMRKKAGG 223
REE LYF+DTFA PWEKDKHY+M+Y+LEKKYFP Q LD AF+ A R
Sbjct: 130 AREEALYFHDTFAMPWEKDKHYRMLYRLEKKYFPHQSLDNAFVSADAAPASDADRG---- 185
Query: 224 KSEEKKYNKEDDKRLVFFDDQEKKSEKDSILGEDVNV-KGEVSEKKVEEFFKCLKKVP-- 280
LVFFDD++K++E + D KGEV E+KVE+FF+ LKK P
Sbjct: 186 --------------LVFFDDEKKENEGEERAVSDKGANKGEVLERKVEDFFRSLKKGPGQ 231
Query: 281 --NKENEVGS----------------GEPYIVSRSTELPPTWDGPFGTMVLVNKPKGWTS 322
K G+ +PY+V+R+TELPP WDGP GT+VL++KPKGWTS
Sbjct: 232 VDTKAKRPGTEPQQQVKREVRREEERPQPYLVTRTTELPPRWDGPAGTVVLIDKPKGWTS 291
Query: 323 FTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEA 382
FTVCGKLRRLVKV+KVGHAGTLDPMATGLLIVCVGKATK+VD YQGM+KGYSGVFRLGEA
Sbjct: 292 FTVCGKLRRLVKVQKVGHAGTLDPMATGLLIVCVGKATKIVDSYQGMVKGYSGVFRLGEA 351
Query: 383 TSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
TSTWDADSP+IQREPWEHIKDE+IRKAAASF GEIWQVPPMFSAIKV
Sbjct: 352 TSTWDADSPIIQREPWEHIKDENIRKAAASFMGEIWQVPPMFSAIKV 398
>gi|226501514|ref|NP_001150630.1| pseudouridylate synthase/ transporter [Zea mays]
gi|195640714|gb|ACG39825.1| pseudouridylate synthase/ transporter [Zea mays]
Length = 490
Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust.
Identities = 219/407 (53%), Positives = 257/407 (63%), Gaps = 68/407 (16%)
Query: 45 SITSTPYPLQYDMIINNPTQPQQSQTRRRPARVNSTNSDENQNPDGE-LGFDSWVDKKLE 103
S+T+T YPL YD+I++ P P P + ++ +D P E D + L
Sbjct: 31 SLTATRYPLYYDLIVHRPADPN-------PPKSSAAGADRQPQPAPEEQTLDRAKRRYLR 83
Query: 104 KEAKTRQPGSDNAEMTKSMRKYYNKRRQRMYGTDSEDEYGKNDDGFVELKPEVVEFNRLH 163
K P D TK SE FVEL+PEVV+F RLH
Sbjct: 84 KRRSRLLPDPDATTTTKPS------------SLSSE---------FVELRPEVVDFPRLH 122
Query: 164 KREEELYFYDTFAYPWEKDKHYKMVYQLEKKYFPDQCLDKAFLDPSADQNVKKMRKKAGG 223
REE LYF+DTFA PWEKDKHY+M+Y+LEKKYFP Q LD AF+ A R
Sbjct: 123 AREEALYFHDTFAMPWEKDKHYRMLYRLEKKYFPHQSLDNAFVSADAAPASDADRG---- 178
Query: 224 KSEEKKYNKEDDKRLVFFDDQEKKSEKDSILGEDVNV-KGEVSEKKVEEFFKCLKKVP-- 280
LVFFDD++K++E + D KGEV E+KVE+FF+ LKK P
Sbjct: 179 --------------LVFFDDEKKENEGEERAVSDKGANKGEVLERKVEDFFRSLKKGPGQ 224
Query: 281 --NKENEVGS----------------GEPYIVSRSTELPPTWDGPFGTMVLVNKPKGWTS 322
K G+ +PY+V+R+TELPP WDGP GT+VL++KPKGWTS
Sbjct: 225 VDTKAKRPGTEPQQQVKREVRREEERPQPYLVTRTTELPPRWDGPAGTVVLIDKPKGWTS 284
Query: 323 FTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEA 382
FTVCGKLRRLVKV+KVGHAGTLDPMATGLLIVCVGKATK+VD YQGM+KGYSGVFRLGEA
Sbjct: 285 FTVCGKLRRLVKVQKVGHAGTLDPMATGLLIVCVGKATKIVDSYQGMVKGYSGVFRLGEA 344
Query: 383 TSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
TSTWDADSP+IQREPWEHIKDE+IRKAAASF GEIWQVPPMFSAIKV
Sbjct: 345 TSTWDADSPIIQREPWEHIKDENIRKAAASFMGEIWQVPPMFSAIKV 391
>gi|297603679|ref|NP_001054428.2| Os05g0108000 [Oryza sativa Japonica Group]
gi|52353567|gb|AAU44133.1| putative tRNA synthase [Oryza sativa Japonica Group]
gi|255675942|dbj|BAF16342.2| Os05g0108000 [Oryza sativa Japonica Group]
Length = 488
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 212/402 (52%), Positives = 253/402 (62%), Gaps = 63/402 (15%)
Query: 45 SITSTPYPLQYDMIINNPTQPQQSQTRRRPARVNSTNSDENQNPDGELGFDSWVDKKLEK 104
S+T+TPYPL YD+++ P+ P P + ++ + + D L + +
Sbjct: 34 SLTATPYPLYYDLLLYRPSYPN-------PPKSSAADDRHTRPTDDHLDRAKRRYLRKRR 86
Query: 105 EAKTRQPGSDNAEMTKSMRKYYNKRRQRMYGTDSEDEYGKNDDGFVELKPEVVEFNRLHK 164
P + A+ + S FVELKPEVV+F RLH
Sbjct: 87 SRLLPDPDATTAKPSSSSSSE-----------------------FVELKPEVVDFPRLHA 123
Query: 165 REEELYFYDTFAYPWEKDKHYKMVYQLEKKYFPDQCLDKAFLDPSADQNVKKMRKKAGGK 224
REE LYF+D FA PWEKDKHY+M+Y+LEKKYFPDQ LD AF+ A
Sbjct: 124 REEALYFHDAFALPWEKDKHYRMLYRLEKKYFPDQSLDNAFVPADA-------------- 169
Query: 225 SEEKKYNKEDDKRLVFFDDQEKKSEKDSILGEDVNVKGEVSEKKVEEFFKCLKKVP-NKE 283
+ DK LVFFDD + E + +D +GEV E+KVE+FF+ LKK P + E
Sbjct: 170 --SPPSSDAADKGLVFFDDDDNNKEAEVKKKKDGEDRGEVLERKVEDFFRSLKKGPGHGE 227
Query: 284 NEVGSG----------------EPYIVSRSTELPPTWDGPFGTMVLVNKPKGWTSFTVCG 327
V +P++ SR TELPP W+GP GT+VL++KPKGWTSFTVCG
Sbjct: 228 ANVMKAKKKEPPQVRHEADEWPQPHLASRRTELPPRWNGPTGTVVLIDKPKGWTSFTVCG 287
Query: 328 KLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWD 387
KLRRLV V+KVGHAGTLDPMATGLLIVCVGKATK+VDRYQGM+KGYSGVFRLGEATSTWD
Sbjct: 288 KLRRLVNVQKVGHAGTLDPMATGLLIVCVGKATKVVDRYQGMVKGYSGVFRLGEATSTWD 347
Query: 388 ADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
ADSPVIQREPWEHIKDEDIRK AASFRGEIWQVPPMFSAIKV
Sbjct: 348 ADSPVIQREPWEHIKDEDIRKVAASFRGEIWQVPPMFSAIKV 389
>gi|14719313|gb|AAK73131.1|AC079022_4 putative tRNA synthase [Oryza sativa]
Length = 525
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 212/402 (52%), Positives = 253/402 (62%), Gaps = 63/402 (15%)
Query: 45 SITSTPYPLQYDMIINNPTQPQQSQTRRRPARVNSTNSDENQNPDGELGFDSWVDKKLEK 104
S+T+TPYPL YD+++ P+ P P + ++ + + D L + +
Sbjct: 71 SLTATPYPLYYDLLLYRPSYPN-------PPKSSAADDRHTRPTDDHLDRAKRRYLRKRR 123
Query: 105 EAKTRQPGSDNAEMTKSMRKYYNKRRQRMYGTDSEDEYGKNDDGFVELKPEVVEFNRLHK 164
P + A+ + S FVELKPEVV+F RLH
Sbjct: 124 SRLLPDPDATTAKPSSSSSSE-----------------------FVELKPEVVDFPRLHA 160
Query: 165 REEELYFYDTFAYPWEKDKHYKMVYQLEKKYFPDQCLDKAFLDPSADQNVKKMRKKAGGK 224
REE LYF+D FA PWEKDKHY+M+Y+LEKKYFPDQ LD AF+ A
Sbjct: 161 REEALYFHDAFALPWEKDKHYRMLYRLEKKYFPDQSLDNAFVPADA-------------- 206
Query: 225 SEEKKYNKEDDKRLVFFDDQEKKSEKDSILGEDVNVKGEVSEKKVEEFFKCLKKVP-NKE 283
+ DK LVFFDD + E + +D +GEV E+KVE+FF+ LKK P + E
Sbjct: 207 --SPPSSDAADKGLVFFDDDDNNKEAEVKKKKDGEDRGEVLERKVEDFFRSLKKGPGHGE 264
Query: 284 NEVGSG----------------EPYIVSRSTELPPTWDGPFGTMVLVNKPKGWTSFTVCG 327
V +P++ SR TELPP W+GP GT+VL++KPKGWTSFTVCG
Sbjct: 265 ANVMKAKKKEPPQVRHEADEWPQPHLASRRTELPPRWNGPTGTVVLIDKPKGWTSFTVCG 324
Query: 328 KLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWD 387
KLRRLV V+KVGHAGTLDPMATGLLIVCVGKATK+VDRYQGM+KGYSGVFRLGEATSTWD
Sbjct: 325 KLRRLVNVQKVGHAGTLDPMATGLLIVCVGKATKVVDRYQGMVKGYSGVFRLGEATSTWD 384
Query: 388 ADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
ADSPVIQREPWEHIKDEDIRK AASFRGEIWQVPPMFSAIKV
Sbjct: 385 ADSPVIQREPWEHIKDEDIRKVAASFRGEIWQVPPMFSAIKV 426
>gi|218195946|gb|EEC78373.1| hypothetical protein OsI_18143 [Oryza sativa Indica Group]
Length = 488
Score = 369 bits (948), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 212/402 (52%), Positives = 252/402 (62%), Gaps = 63/402 (15%)
Query: 45 SITSTPYPLQYDMIINNPTQPQQSQTRRRPARVNSTNSDENQNPDGELGFDSWVDKKLEK 104
S+T+TPYPL YD+++ P+ P P + ++ + + D L + +
Sbjct: 34 SLTATPYPLYYDLLLYRPSYPN-------PPKSSAADDRHTRPTDDHLDRAKRRYLRKRR 86
Query: 105 EAKTRQPGSDNAEMTKSMRKYYNKRRQRMYGTDSEDEYGKNDDGFVELKPEVVEFNRLHK 164
P + A+ + S FVELKPEVV+F RLH
Sbjct: 87 SRLLPDPDATTAKPSSSSSSE-----------------------FVELKPEVVDFPRLHA 123
Query: 165 REEELYFYDTFAYPWEKDKHYKMVYQLEKKYFPDQCLDKAFLDPSADQNVKKMRKKAGGK 224
REE LYF+D FA PWEKDKHY+M+Y+LEKKYFPDQ LD AF+ A
Sbjct: 124 REEALYFHDAFALPWEKDKHYRMLYRLEKKYFPDQSLDNAFVPADA-------------- 169
Query: 225 SEEKKYNKEDDKRLVFFDDQEKKSEKDSILGEDVNVKGEVSEKKVEEFFKCLKKVP-NKE 283
+ DK LVFFDD E + +D +GEV E+KVE+FF+ LKK P + E
Sbjct: 170 --SPPSSDAADKGLVFFDDDGNNKEAEVKKKKDGEDRGEVLERKVEDFFRSLKKGPGHGE 227
Query: 284 NEVGSG----------------EPYIVSRSTELPPTWDGPFGTMVLVNKPKGWTSFTVCG 327
V +P++ SR TELPP W+GP GT+VL++KPKGWTSFTVCG
Sbjct: 228 ANVMKAKKKEPPQVRHEADEWPQPHLASRRTELPPRWNGPTGTVVLIDKPKGWTSFTVCG 287
Query: 328 KLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWD 387
KLRRLV V+KVGHAGTLDPMATGLLIVCVGKATK+VDRYQGM+KGYSGVFRLGEATSTWD
Sbjct: 288 KLRRLVNVQKVGHAGTLDPMATGLLIVCVGKATKVVDRYQGMVKGYSGVFRLGEATSTWD 347
Query: 388 ADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
ADSPVIQREPWEHIKDEDIRK AASFRGEIWQVPPMFSAIKV
Sbjct: 348 ADSPVIQREPWEHIKDEDIRKVAASFRGEIWQVPPMFSAIKV 389
>gi|28195117|gb|AAO33771.1| putative tRNA pseudouridine synthase [Oryza sativa Indica Group]
Length = 458
Score = 369 bits (947), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 212/402 (52%), Positives = 252/402 (62%), Gaps = 63/402 (15%)
Query: 45 SITSTPYPLQYDMIINNPTQPQQSQTRRRPARVNSTNSDENQNPDGELGFDSWVDKKLEK 104
S+T+TPYPL YD+++ P+ P P + ++ + + D L + +
Sbjct: 34 SLTATPYPLYYDLLLYRPSYPN-------PPKSSAADDRHTRPTDDHLDRAKRRYLRKRR 86
Query: 105 EAKTRQPGSDNAEMTKSMRKYYNKRRQRMYGTDSEDEYGKNDDGFVELKPEVVEFNRLHK 164
P + A+ + S FVELKPEVV+F RLH
Sbjct: 87 SRLLPDPDATTAKPSSSSSSE-----------------------FVELKPEVVDFPRLHA 123
Query: 165 REEELYFYDTFAYPWEKDKHYKMVYQLEKKYFPDQCLDKAFLDPSADQNVKKMRKKAGGK 224
REE LYF+D FA PWEKDKHY+M+Y+LEKKYFPDQ LD AF+ A
Sbjct: 124 REEALYFHDAFALPWEKDKHYRMLYRLEKKYFPDQSLDNAFVPADA-------------- 169
Query: 225 SEEKKYNKEDDKRLVFFDDQEKKSEKDSILGEDVNVKGEVSEKKVEEFFKCLKKVP-NKE 283
+ DK LVFFDD E + +D +GEV E+KVE+FF+ LKK P + E
Sbjct: 170 --SPPSSDAADKGLVFFDDDGNNKEAEVKKKKDGEDRGEVLERKVEDFFRSLKKGPGHGE 227
Query: 284 NEVGSG----------------EPYIVSRSTELPPTWDGPFGTMVLVNKPKGWTSFTVCG 327
V +P++ SR TELPP W+GP GT+VL++KPKGWTSFTVCG
Sbjct: 228 ANVMKAKKKEPPQVRHEADEWPQPHLASRRTELPPRWNGPTGTVVLIDKPKGWTSFTVCG 287
Query: 328 KLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWD 387
KLRRLV V+KVGHAGTLDPMATGLLIVCVGKATK+VDRYQGM+KGYSGVFRLGEATSTWD
Sbjct: 288 KLRRLVNVQKVGHAGTLDPMATGLLIVCVGKATKVVDRYQGMVKGYSGVFRLGEATSTWD 347
Query: 388 ADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
ADSPVIQREPWEHIKDEDIRK AASFRGEIWQVPPMFSAIKV
Sbjct: 348 ADSPVIQREPWEHIKDEDIRKVAASFRGEIWQVPPMFSAIKV 389
>gi|222629918|gb|EEE62050.1| hypothetical protein OsJ_16834 [Oryza sativa Japonica Group]
Length = 525
Score = 368 bits (944), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 195/335 (58%), Positives = 220/335 (65%), Gaps = 70/335 (20%)
Query: 149 FVELKPEVVEFNRLHKREEELYFYDTFAYPWEKDKHYKMVYQLEKKYFPDQCLDKAFLDP 208
FVELKPEVV+F RLH REE LYF+D FA PWEKDKHY+M+Y+LEKKYFPDQ LD AF+
Sbjct: 108 FVELKPEVVDFPRLHAREEALYFHDAFALPWEKDKHYRMLYRLEKKYFPDQSLDNAFVPA 167
Query: 209 SADQNVKKMRKKAGGKSEEKKYNKEDDKRLVFFDDQEKKSEKDSILGEDVNVKGEVSEKK 268
A + DK LVFFDD + E + +D +GEV E+K
Sbjct: 168 DA----------------SPPSSDAADKGLVFFDDDDNNKEAEVKKKKDGEDRGEVLERK 211
Query: 269 VEEFFKCLKKVP-NKENEVGSG----------------EPYIVSRSTELPPTWDGPFGTM 311
VE+FF+ LKK P + E V +P++ SR TELPP W+GP GT+
Sbjct: 212 VEDFFRSLKKGPGHGEANVMKAKKKEPPQVRHEADEWPQPHLASRRTELPPRWNGPTGTV 271
Query: 312 VLVNKPKG-------------------------------------WTSFTVCGKLRRLVK 334
VL++KPKG WTSFTVCGKLRRLV
Sbjct: 272 VLIDKPKGDASLSSLDERSNARFKRLHQNLVLFMELNICLSCKPGWTSFTVCGKLRRLVN 331
Query: 335 VKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQ 394
V+KVGHAGTLDPMATGLLIVCVGKATK+VDRYQGM+KGYSGVFRLGEATSTWDADSPVIQ
Sbjct: 332 VQKVGHAGTLDPMATGLLIVCVGKATKVVDRYQGMVKGYSGVFRLGEATSTWDADSPVIQ 391
Query: 395 REPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
REPWEHIKDEDIRK AASFRGEIWQVPPMFSAIKV
Sbjct: 392 REPWEHIKDEDIRKVAASFRGEIWQVPPMFSAIKV 426
>gi|413942369|gb|AFW75018.1| hypothetical protein ZEAMMB73_733647 [Zea mays]
Length = 386
Score = 363 bits (933), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 205/393 (52%), Positives = 243/393 (61%), Gaps = 68/393 (17%)
Query: 45 SITSTPYPLQYDMIINNPTQPQQSQTRRRPARVNSTNSDENQNPDGE-LGFDSWVDKKLE 103
S+T+T YPL YD+I++ P P P + ++ +D P E D + L
Sbjct: 38 SLTATRYPLYYDLIVHRPADPN-------PPKSSAAGADRQPQPAPEEQTLDRAKRRYLR 90
Query: 104 KEAKTRQPGSDNAEMTKSMRKYYNKRRQRMYGTDSEDEYGKNDDGFVELKPEVVEFNRLH 163
K P D TK SE FVEL+PEVV+F RLH
Sbjct: 91 KRRSRLLPDPDATTTTKPS------------SLSSE---------FVELRPEVVDFPRLH 129
Query: 164 KREEELYFYDTFAYPWEKDKHYKMVYQLEKKYFPDQCLDKAFLDPSADQNVKKMRKKAGG 223
REE LYF+DTFA PWEKDKHY+M+Y+LEKKYFP Q LD AF+ A R
Sbjct: 130 AREEALYFHDTFAMPWEKDKHYRMLYRLEKKYFPHQSLDNAFVSADAAPASDADRG---- 185
Query: 224 KSEEKKYNKEDDKRLVFFDDQEKKSEKDSILGEDVNV-KGEVSEKKVEEFFKCLKKVP-- 280
LVFFDD++K++E + D KGEV E+KVE+FF+ LKK P
Sbjct: 186 --------------LVFFDDEKKENEGEERAVSDKGANKGEVLERKVEDFFRSLKKGPGQ 231
Query: 281 --NKENEVGS----------------GEPYIVSRSTELPPTWDGPFGTMVLVNKPKGWTS 322
K G+ +PY+V+R+TELPP WDGP GT+VL++KPKGWTS
Sbjct: 232 VDTKAKRPGTEPQQQVKREVRREEERPQPYLVTRTTELPPRWDGPAGTVVLIDKPKGWTS 291
Query: 323 FTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEA 382
FTVCGKLRRLVKV+KVGHAGTLDPMATGLLIVCVGKATK+VD YQGM+KGYSGVFRLGEA
Sbjct: 292 FTVCGKLRRLVKVQKVGHAGTLDPMATGLLIVCVGKATKIVDSYQGMVKGYSGVFRLGEA 351
Query: 383 TSTWDADSPVIQREPWEHIKDEDIRKAAASFRG 415
TSTWDADSP+IQREPWEHIKDE+IRKAAASF G
Sbjct: 352 TSTWDADSPIIQREPWEHIKDENIRKAAASFMG 384
>gi|326495510|dbj|BAJ85851.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 502
Score = 323 bits (827), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 175/282 (62%), Positives = 196/282 (69%), Gaps = 50/282 (17%)
Query: 178 PWEKDKHYKMVYQLEKKYFPDQCLDKAFLDPSADQNVKKMRKKAGGKSEEKKYNKEDDKR 237
P EKDKHY+M+Y+LEKKYFP+Q LD AF+ A + DK
Sbjct: 142 PGEKDKHYRMLYRLEKKYFPEQSLDNAFVAADAPPQ-----------------PSDADKG 184
Query: 238 LVFFDDQEKKS-EKDSILGEDVNVKGEVSEKKVEEFFKCLKKVPN------------KEN 284
LVFF+++ K E G D KGEV E+KVEEFF+ LKK P K+
Sbjct: 185 LVFFEEEGKDGVEVGRKEGAD---KGEVLERKVEEFFRALKKGPGEGKADDASTAAKKKT 241
Query: 285 EVGS------------GE-----PYIVSRSTELPPTWDGPFGTMVLVNKPKGWTSFTVCG 327
VG GE P++ S TELPP WDGP GT+VL++KPKGWTSFTVCG
Sbjct: 242 VVGGAPRPVKRDAERGGEEDWPRPHLASTRTELPPRWDGPTGTVVLIDKPKGWTSFTVCG 301
Query: 328 KLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWD 387
KLRRLVKV+KVGHAGTLDPMATGLLIVCVGKATK+VD+YQGM+KGYSGVFRLGEATSTWD
Sbjct: 302 KLRRLVKVQKVGHAGTLDPMATGLLIVCVGKATKVVDKYQGMVKGYSGVFRLGEATSTWD 361
Query: 388 ADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
ADSPVIQRE WEHIKDEDIRKAAASF GEIWQVPPMFSAIKV
Sbjct: 362 ADSPVIQRESWEHIKDEDIRKAAASFMGEIWQVPPMFSAIKV 403
>gi|413942367|gb|AFW75016.1| hypothetical protein ZEAMMB73_733647 [Zea mays]
Length = 315
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 134/316 (42%), Positives = 168/316 (53%), Gaps = 68/316 (21%)
Query: 45 SITSTPYPLQYDMIINNPTQPQQSQTRRRPARVNSTNSDENQNPDGE-LGFDSWVDKKLE 103
S+T+T YPL YD+I++ P P P + ++ +D P E D + L
Sbjct: 38 SLTATRYPLYYDLIVHRPADPN-------PPKSSAAGADRQPQPAPEEQTLDRAKRRYLR 90
Query: 104 KEAKTRQPGSDNAEMTKSMRKYYNKRRQRMYGTDSEDEYGKNDDGFVELKPEVVEFNRLH 163
K P D TK SE FVEL+PEVV+F RLH
Sbjct: 91 KRRSRLLPDPDATTTTKPS------------SLSSE---------FVELRPEVVDFPRLH 129
Query: 164 KREEELYFYDTFAYPWEKDKHYKMVYQLEKKYFPDQCLDKAFLDPSADQNVKKMRKKAGG 223
REE LYF+DTFA PWEKDKHY+M+Y+LEKKYFP Q LD AF+ A R
Sbjct: 130 AREEALYFHDTFAMPWEKDKHYRMLYRLEKKYFPHQSLDNAFVSADAAPASDADRG---- 185
Query: 224 KSEEKKYNKEDDKRLVFFDDQEKKSEKDSILGEDVNV-KGEVSEKKVEEFFKCLKKVP-- 280
LVFFDD++K++E + D KGEV E+KVE+FF+ LKK P
Sbjct: 186 --------------LVFFDDEKKENEGEERAVSDKGANKGEVLERKVEDFFRSLKKGPGQ 231
Query: 281 --NKENEVGS----------------GEPYIVSRSTELPPTWDGPFGTMVLVNKPKGWTS 322
K G+ +PY+V+R+TELPP WDGP GT+VL++KPKGWTS
Sbjct: 232 VDTKAKRPGTEPQQQVKREVRREEERPQPYLVTRTTELPPRWDGPAGTVVLIDKPKGWTS 291
Query: 323 FTVCGKLRRLVKVKKV 338
FTVCGKLRRLVKV+KV
Sbjct: 292 FTVCGKLRRLVKVQKV 307
>gi|302803319|ref|XP_002983413.1| hypothetical protein SELMODRAFT_180168 [Selaginella moellendorffii]
gi|300149098|gb|EFJ15755.1| hypothetical protein SELMODRAFT_180168 [Selaginella moellendorffii]
Length = 447
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 129/316 (40%), Positives = 187/316 (59%), Gaps = 23/316 (7%)
Query: 128 KRRQRMYGTDSEDEYGKNDDGFVELKPEVVEFNRLHKREEELYFYDTFAYPWEKDKHYKM 187
+ R+R Y + +E ++D G+ PE+ + ++ LYFY+ A+PWEK +
Sbjct: 6 RERKRRYFSKKLEE-KESDKGW---HPELCTYESEFAKQHALYFYNLLAFPWEKGAFERF 61
Query: 188 VYQLEKKYFPDQCLDKAFLDPSADQNVKKMRKKAGGKSEEKKYN-KEDDKRLVFFDDQEK 246
V +LE+KYFP+ +D L P D K+ + KAG +++KK + + + F+
Sbjct: 62 VDKLERKYFPEDHIDA--LVPPLD---KEPKAKAGKSNKDKKLSARPSSAQSSSFEAYAA 116
Query: 247 KSEKDSILGEDVNVKGEVSEKKVEEFFKCLKKVPNKENEVGSGE-------------PYI 293
+ +++ S + + ++ P+ E S E P +
Sbjct: 117 DASVENVEETSPTRPASGSIEISPDDWEPEASSPDTYAEAVSDETPKRKAADTLTPRPPV 176
Query: 294 VSRSTELPPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLI 353
++R+ +LP WDGP GT+VL++KP GWTSF+VC KLR+L+K+KKVGHAGTLDPMATGLLI
Sbjct: 177 ITRTVKLPEEWDGPLGTVVLIDKPHGWTSFSVCAKLRKLLKIKKVGHAGTLDPMATGLLI 236
Query: 354 VCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASF 413
VCVGKATK D YQ M K YSG RLGEAT ++DAD+ V +R PWEH+ DED++ F
Sbjct: 237 VCVGKATKFTDSYQAMKKFYSGTLRLGEATPSYDADTLVSERMPWEHVTDEDMQIVKEEF 296
Query: 414 RGEIWQVPPMFSAIKV 429
G I QVPP++SA+KV
Sbjct: 297 VGTIRQVPPLYSALKV 312
>gi|302754404|ref|XP_002960626.1| hypothetical protein SELMODRAFT_75554 [Selaginella moellendorffii]
gi|300171565|gb|EFJ38165.1| hypothetical protein SELMODRAFT_75554 [Selaginella moellendorffii]
Length = 447
Score = 208 bits (530), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 128/316 (40%), Positives = 189/316 (59%), Gaps = 24/316 (7%)
Query: 128 KRRQRMYGTDSEDEYGKNDDGFVELKPEVVEFNRLHKREEELYFYDTFAYPWEKDKHYKM 187
+R++R + E++ ++D G+ PE+ + ++ LYFY+ A+PWEK +
Sbjct: 7 ERKRRYFSKKLEEK--ESDKGW---HPELCTYESEFAKQHALYFYNLLAFPWEKGAFERF 61
Query: 188 VYQLEKKYFPDQCLDKAFLDPSADQNVKKMRKKAGGKSEEKKYNK-----EDDKRLVFFD 242
V +LE+KYFP+ +D L P D K+ + KAG +++KK + + +
Sbjct: 62 VDKLERKYFPEDHIDA--LVPPLD---KEPKAKAGKSNKDKKLSAWPSSAQSSSFEAYAA 116
Query: 243 DQEKKSEKDSILGEDVNVKGEVSEKKVE-------EFFKCL--KKVPNKENEVGSGEPYI 293
D ++ +D+ + E+S E + + + +K K + + P +
Sbjct: 117 DASVENVEDTSPTRPASGSIEISPDDWEPEASSPDTYAEAVSDEKPKRKAADTLTPRPPV 176
Query: 294 VSRSTELPPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLI 353
++R+ LP WDGP GT+VL++KP GWTSF+VC KLR+L+K+KKVGHAGTLDPMATGLLI
Sbjct: 177 ITRTVNLPEEWDGPLGTVVLIDKPHGWTSFSVCAKLRKLLKIKKVGHAGTLDPMATGLLI 236
Query: 354 VCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASF 413
VCVGKATK D YQ M K YSG RLGEAT ++D D+ V +R PWEH+ DED++ F
Sbjct: 237 VCVGKATKFTDSYQAMKKFYSGTLRLGEATPSYDGDTLVSERMPWEHVTDEDMQIVKEEF 296
Query: 414 RGEIWQVPPMFSAIKV 429
G I QVPP++SA+KV
Sbjct: 297 VGTIRQVPPLYSALKV 312
>gi|168042413|ref|XP_001773683.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675071|gb|EDQ61571.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 584
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 85/156 (54%), Positives = 110/156 (70%), Gaps = 16/156 (10%)
Query: 291 PYIVSRSTELPPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKK------------- 337
P ++ RS+++P WDGP GT+VL++KP GW+SF VCGKLR ++ +KK
Sbjct: 321 PIVIKRSSKVPEDWDGPGGTVVLIDKPLGWSSFAVCGKLRHMLGIKKSLVRDYTCSVKDL 380
Query: 338 --VGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQR 395
VGHAGTLDP+ TGLLIVCVG+ATK D YQ M K YSG R GEAT + DA +PV +
Sbjct: 381 LQVGHAGTLDPLCTGLLIVCVGRATKCADSYQAMTKVYSGTMRFGEATPSLDAGTPVSEE 440
Query: 396 EPWEHIKDEDIRKAAA-SFRGEIWQVPPMFSAIKVR 430
PWE I+++DI+ A SF+G+I QVPPM+SAIKV+
Sbjct: 441 LPWEQIQEQDIQSAVEKSFQGDIMQVPPMYSAIKVK 476
>gi|375152126|gb|AFA36521.1| pseudouridylate synthase transporter, partial [Lolium perenne]
Length = 136
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 83/87 (95%), Positives = 85/87 (97%)
Query: 343 TLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIK 402
TLDPMATGLLIVCVGKATK+VDRYQGM+KGYSGVFRLGEATSTWDADSPVIQRE WEHIK
Sbjct: 1 TLDPMATGLLIVCVGKATKVVDRYQGMVKGYSGVFRLGEATSTWDADSPVIQRESWEHIK 60
Query: 403 DEDIRKAAASFRGEIWQVPPMFSAIKV 429
DEDIRKAAASF GEIWQVPPMFSAIKV
Sbjct: 61 DEDIRKAAASFMGEIWQVPPMFSAIKV 87
>gi|308806718|ref|XP_003080670.1| putative tRNA synthase (ISS) [Ostreococcus tauri]
gi|116059131|emb|CAL54838.1| putative tRNA synthase (ISS) [Ostreococcus tauri]
Length = 320
Score = 158 bits (399), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 76/121 (62%), Positives = 92/121 (76%), Gaps = 3/121 (2%)
Query: 312 VLVNKPKGWTSFTVCGKLRRLVK---VKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQG 368
+LV+KPKG+TSF V ++RRL K VKKVGH GTLDPMATGLLI+CVG+ATK VD Y G
Sbjct: 45 ILVDKPKGYTSFDVVARVRRLSKQRGVKKVGHCGTLDPMATGLLILCVGRATKSVDEYTG 104
Query: 369 MIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
M K Y+G RLGE T + DAD V +REPWEH+ DE +R+ A + G I Q+PPM+SAIK
Sbjct: 105 MDKTYTGTIRLGEGTPSQDADEAVNEREPWEHVTDEALRERARALTGPIEQLPPMYSAIK 164
Query: 429 V 429
V
Sbjct: 165 V 165
>gi|384247163|gb|EIE20650.1| putative tRNA pseudouridine synthase [Coccomyxa subellipsoidea
C-169]
Length = 235
Score = 157 bits (398), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 73/119 (61%), Positives = 90/119 (75%)
Query: 312 VLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIK 371
VLV+KP+ WTSF VCGKLR +KVKKVGHAGTLDPMATGLLI+C G+ TK +D + M K
Sbjct: 18 VLVDKPQDWTSFDVCGKLRGALKVKKVGHAGTLDPMATGLLIICTGQGTKQIDDFVAMEK 77
Query: 372 GYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVR 430
YSG RLG+AT ++DA S + + PWE I DED+ A +F G+I Q PPMFSAIK++
Sbjct: 78 AYSGTLRLGQATPSYDAMSEIEEELPWEDITDEDLEAAKEAFVGDILQQPPMFSAIKIK 136
>gi|307106831|gb|EFN55076.1| hypothetical protein CHLNCDRAFT_12296, partial [Chlorella
variabilis]
Length = 221
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 76/127 (59%), Positives = 91/127 (71%), Gaps = 8/127 (6%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKV--------KKVGHAGTLDPMATGLLIVCVGKATKL 362
++LV+KPK WTSF VCGKLR + KVGHAGTLDPMATGLLIVCVG+ TK
Sbjct: 1 VLLVDKPKEWTSFDVCGKLRPALAALLGKKNREVKVGHAGTLDPMATGLLIVCVGRGTKA 60
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
VD + M K YSG RLGE T ++DAD+PV QR PWEHI D+D+ +A GEI Q+PP
Sbjct: 61 VDAFMAMHKCYSGTLRLGEGTPSYDADTPVEQRAPWEHITDDDLLRARDGLVGEIQQLPP 120
Query: 423 MFSAIKV 429
M+SAIK+
Sbjct: 121 MYSAIKI 127
>gi|159482250|ref|XP_001699184.1| hypothetical protein CHLREDRAFT_121340 [Chlamydomonas reinhardtii]
gi|158273031|gb|EDO98824.1| predicted protein [Chlamydomonas reinhardtii]
Length = 207
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 70/128 (54%), Positives = 91/128 (71%), Gaps = 3/128 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLR---RLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQ 367
++LV+KP GWTSF VCGK+R R ++VKKVGHAGTLDP A+GLLIVC GK TK D +Q
Sbjct: 8 VILVDKPLGWTSFDVCGKIRNMIRFLEVKKVGHAGTLDPNASGLLIVCTGKGTKFCDDFQ 67
Query: 368 GMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAI 427
K YSG RLGE T ++DA+S V +R WEHI DE+++ AAA + G I QVPPM
Sbjct: 68 AQDKEYSGTLRLGEFTPSYDAESEVTERSAWEHITDEELQAAAAKYVGNIMQVPPMARVG 127
Query: 428 KVRVFHFS 435
++++ +
Sbjct: 128 GMKMYQLA 135
>gi|145349328|ref|XP_001419088.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579319|gb|ABO97381.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 279
Score = 147 bits (372), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 70/121 (57%), Positives = 90/121 (74%), Gaps = 3/121 (2%)
Query: 312 VLVNKPKGWTSFTVCGKLRRLVK---VKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQG 368
+L++KP+ +TSF V ++RRL + VKKVGH GTLDPMATGLLI+CVGKATK V+ Y G
Sbjct: 48 ILMDKPQKYTSFDVVARVRRLSRERGVKKVGHCGTLDPMATGLLILCVGKATKSVEEYSG 107
Query: 369 MIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
M K Y+G +LGE T + DAD V +REPWEH+ D ++R+ A G I Q+PPM+SAIK
Sbjct: 108 MDKTYTGTIKLGEGTPSQDADEEVNEREPWEHVTDVELREGARKLTGAIKQLPPMYSAIK 167
Query: 429 V 429
V
Sbjct: 168 V 168
>gi|255078814|ref|XP_002502987.1| predicted protein [Micromonas sp. RCC299]
gi|226518253|gb|ACO64245.1| predicted protein [Micromonas sp. RCC299]
Length = 230
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 70/123 (56%), Positives = 88/123 (71%), Gaps = 3/123 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLR---RLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQ 367
++L++KPKGWTSF V GK R R + KKVGH GTLDP ATGLLI+CVGKATK+VD +
Sbjct: 2 VLLIDKPKGWTSFDVVGKTRWLSRRMGSKKVGHCGTLDPNATGLLILCVGKATKMVDSFT 61
Query: 368 GMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAI 427
GM K Y+G +LGE T + D V +R PWEH+ D D+ A + G+I Q+PPMFSAI
Sbjct: 62 GMDKVYTGTMKLGEGTPSQDCCEEVDERLPWEHVSDADLAAGAKAMEGDIKQIPPMFSAI 121
Query: 428 KVR 430
KV+
Sbjct: 122 KVK 124
>gi|412991268|emb|CCO16113.1| tRNA pseudouridine synthase B [Bathycoccus prasinos]
Length = 341
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/156 (50%), Positives = 103/156 (66%), Gaps = 15/156 (9%)
Query: 289 GEPYIVSRSTELPPT---WDGPF-------GTMVLVNKPKGWTSFTVCGKLRRLVK---V 335
G P VS++ PT W GP G + LV+KP+ WTSF VC K++ + K V
Sbjct: 75 GPPLEVSKTLNRRPTVLEWRGPNFPQDQSDGLVFLVDKPQEWTSFDVCAKIKSMSKKMGV 134
Query: 336 KKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQR 395
KK+GH GTLDPMATGLLIV +G+ATKL D YQ +K Y+G +LGE T++ DAD+ VI+
Sbjct: 135 KKIGHCGTLDPMATGLLIVVIGRATKLADEYQAKVKTYTGTIKLGEKTASGDADNEVIET 194
Query: 396 EPW-EHIKDEDIRKAA-ASFRGEIWQVPPMFSAIKV 429
+P+ E I +E +AA AS G+I Q+PPMFSA+ V
Sbjct: 195 KPFGEDIVNEASMEAARASLIGDIEQIPPMFSAVHV 230
>gi|404448776|ref|ZP_11013768.1| tRNA pseudouridine synthase B [Indibacter alkaliphilus LW1]
gi|403765500|gb|EJZ26378.1| tRNA pseudouridine synthase B [Indibacter alkaliphilus LW1]
Length = 227
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 63/123 (51%), Positives = 86/123 (69%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P+G + L+NKP WTSF V K+R +++KKVGHAGTLDP+ATGLLIVC G+ TK ++ Y
Sbjct: 5 PYGEVFLINKPLEWTSFDVVKKVRNALRIKKVGHAGTLDPLATGLLIVCAGRKTKSIESY 64
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
G K Y+GVF +G+ T ++D + PVI+ I + ++ AAA G+I Q+PPM SA
Sbjct: 65 MGQEKEYTGVFVIGKTTESFDLEHPVIEVADASAITLDQVKAAAAELTGDILQIPPMHSA 124
Query: 427 IKV 429
IKV
Sbjct: 125 IKV 127
>gi|440747025|ref|ZP_20926286.1| tRNA pseudouridine synthase B [Mariniradius saccharolyticus AK6]
gi|436484654|gb|ELP40630.1| tRNA pseudouridine synthase B [Mariniradius saccharolyticus AK6]
Length = 227
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 65/122 (53%), Positives = 85/122 (69%)
Query: 308 FGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQ 367
+G + L+NKP WTSF V K+R +K+KKVGHAGTLDP+ATGLLIVC GK TK ++ +
Sbjct: 6 YGEVFLINKPLEWTSFDVVKKIRNTLKIKKVGHAGTLDPLATGLLIVCAGKKTKSIETFM 65
Query: 368 GMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAI 427
G K Y+G F LG+ T ++D + V+ H+ ED++KAAA G+I QVPPM SAI
Sbjct: 66 GQEKEYTGTFVLGKTTESFDLEKEVVDVADPAHLTMEDVKKAAAQLTGDILQVPPMHSAI 125
Query: 428 KV 429
KV
Sbjct: 126 KV 127
>gi|311747030|ref|ZP_07720815.1| tRNA pseudouridine synthase B [Algoriphagus sp. PR1]
gi|126578731|gb|EAZ82895.1| tRNA pseudouridine synthase B [Algoriphagus sp. PR1]
Length = 226
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 64/123 (52%), Positives = 84/123 (68%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P+G + L++KP WTSF V K+R +K+KKVGHAGTLDP+ATGLLI+C GK TK ++ +
Sbjct: 5 PYGEVFLIDKPLEWTSFDVVKKVRNALKIKKVGHAGTLDPLATGLLIICAGKMTKQIESF 64
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
G K YSG F LGE T ++D + PV H+ +D++ A A G+I QVPPM SA
Sbjct: 65 MGQEKEYSGTFVLGETTESFDLEKPVTPVADPSHLTIDDVKAAVAELTGDILQVPPMHSA 124
Query: 427 IKV 429
IKV
Sbjct: 125 IKV 127
>gi|406660549|ref|ZP_11068680.1| tRNA pseudouridine synthase B [Cecembia lonarensis LW9]
gi|405555694|gb|EKB50706.1| tRNA pseudouridine synthase B [Cecembia lonarensis LW9]
Length = 228
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 66/122 (54%), Positives = 83/122 (68%)
Query: 308 FGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQ 367
+G + LV+KP WTSF V K+R +K+KKVGHAGTLDP+ATGLLIVC GK TK ++ Y
Sbjct: 7 YGEVFLVDKPYEWTSFDVVKKIRNALKIKKVGHAGTLDPLATGLLIVCAGKKTKSIETYM 66
Query: 368 GMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAI 427
G K Y+G F LG+ T ++D + VI H+K EDI+ AA GEI Q+PP SAI
Sbjct: 67 GQEKEYTGTFVLGKTTESYDLEREVIDVADTSHLKLEDIKNAAVQLTGEIMQIPPAHSAI 126
Query: 428 KV 429
KV
Sbjct: 127 KV 128
>gi|343087491|ref|YP_004776786.1| tRNA pseudouridine synthase B [Cyclobacterium marinum DSM 745]
gi|342356025|gb|AEL28555.1| tRNA pseudouridine synthase B [Cyclobacterium marinum DSM 745]
Length = 229
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 67/122 (54%), Positives = 83/122 (68%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P+G + LVNKP WTSF V K+R +K+KKVGHAGTLDP+ATGLLIVC GK TK +++Y
Sbjct: 7 PYGEVFLVNKPYQWTSFDVVKKIRNTLKIKKVGHAGTLDPLATGLLIVCAGKETKNIEKY 66
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
Q K YSG F LG+ T ++D + V H+ EDI KA AS G+I Q+PP SA
Sbjct: 67 QAQKKEYSGTFVLGKTTESFDLEQEVKTVADPFHLTREDIEKAVASLTGDIMQIPPNHSA 126
Query: 427 IK 428
IK
Sbjct: 127 IK 128
>gi|390945061|ref|YP_006408822.1| tRNA pseudouridine synthase B [Belliella baltica DSM 15883]
gi|390418489|gb|AFL86067.1| tRNA pseudouridine synthase B [Belliella baltica DSM 15883]
Length = 228
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 63/123 (51%), Positives = 85/123 (69%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P+G + L++KP WTSF V K+R +K+KKVGHAGTLDP+ATGLLIVC GK TK +D +
Sbjct: 6 PYGEVFLIDKPLEWTSFDVVKKVRNALKIKKVGHAGTLDPLATGLLIVCAGKKTKSIDVF 65
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
G K Y+G F LG+ T ++D + +I+ H+ ED++ A A G+I Q+PPM SA
Sbjct: 66 MGQEKEYTGTFVLGKTTESFDREKEIIEVADPFHLTLEDVKNAVAELTGDILQIPPMHSA 125
Query: 427 IKV 429
IKV
Sbjct: 126 IKV 128
>gi|189501821|ref|YP_001957538.1| hypothetical protein Aasi_0388 [Candidatus Amoebophilus asiaticus
5a2]
gi|189497262|gb|ACE05809.1| hypothetical protein Aasi_0388 [Candidatus Amoebophilus asiaticus
5a2]
Length = 230
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 61/122 (50%), Positives = 83/122 (68%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQG 368
GTM+L+NKP GWTSF + KLR K+KK+GHAGTLDP+ATGLLI+C K TK + YQ
Sbjct: 11 GTMLLINKPLGWTSFDIVKKLRNTFKIKKIGHAGTLDPLATGLLIICTEKKTKTISYYQE 70
Query: 369 MIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
+ K Y+G LG+ T + D ++P P++HI + I + A +F G I Q+PP +SAIK
Sbjct: 71 LAKVYTGQLVLGKTTPSIDLETPFDSSVPYDHITETAIYELAQTFIGCITQIPPAYSAIK 130
Query: 429 VR 430
+
Sbjct: 131 TK 132
>gi|332662917|ref|YP_004445705.1| tRNA pseudouridine synthase B [Haliscomenobacter hydrossis DSM
1100]
gi|332331731|gb|AEE48832.1| tRNA pseudouridine synthase B [Haliscomenobacter hydrossis DSM
1100]
Length = 237
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 69/127 (54%), Positives = 85/127 (66%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVC----GKLRRLVKVK--KVGHAGTLDPMATGLLIVCVGKATKL 362
G ++LV+KP+GWTSF V GK+R L ++K KVGHAGTLDPMATGLLIVC GK TK
Sbjct: 18 GAVLLVDKPQGWTSFDVVNKIRGKIRSLFQLKNIKVGHAGTLDPMATGLLIVCTGKDTKR 77
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ YQ K Y+G G T ++DA++ + P EHI E + A F GEI QVPP
Sbjct: 78 INEYQDRPKEYTGTITFGATTPSYDAETEIDASYPTEHITPELLENARQKFLGEIEQVPP 137
Query: 423 MFSAIKV 429
MFSAIKV
Sbjct: 138 MFSAIKV 144
>gi|395221166|ref|ZP_10402875.1| tRNA pseudouridine synthase B [Pontibacter sp. BAB1700]
gi|394453368|gb|EJF08311.1| tRNA pseudouridine synthase B [Pontibacter sp. BAB1700]
Length = 231
Score = 130 bits (328), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 58/121 (47%), Positives = 86/121 (71%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQG 368
G ++L++KP WTSF V K+R ++VKK+GHAGTLDP+A+GLLI+C GK TK +D Q
Sbjct: 8 GEILLLDKPLTWTSFDVVKKVRNTLRVKKIGHAGTLDPLASGLLILCTGKFTKRIDEIQA 67
Query: 369 MIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y+G LG+ T ++D ++PV + + H+ EDI+ AA+SF G I Q+PP++SA+
Sbjct: 68 QEKEYTGTITLGQTTPSYDLETPVSESKDISHLTPEDIQAAASSFVGTIEQIPPIYSAVM 127
Query: 429 V 429
+
Sbjct: 128 I 128
>gi|149280008|ref|ZP_01886133.1| putative tRNA pseudouridine synthase [Pedobacter sp. BAL39]
gi|149229205|gb|EDM34599.1| putative tRNA pseudouridine synthase [Pedobacter sp. BAL39]
Length = 258
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/130 (50%), Positives = 85/130 (65%), Gaps = 2/130 (1%)
Query: 302 PTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVK--VKKVGHAGTLDPMATGLLIVCVGKA 359
P ++ G ++L+NKP WTSF V GK+R +K KVGHAGTLDP+ATGLLI+C GK
Sbjct: 25 PEFNFAEGELLLINKPYKWTSFDVVGKIRNSLKPLKLKVGHAGTLDPLATGLLIICTGKL 84
Query: 360 TKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQ 419
TK +D +Q K Y+G LG T ++D ++ V Q P E I +EDI A A F+G+I Q
Sbjct: 85 TKQIDSFQAEEKEYTGTMVLGATTPSFDMETAVDQEFPLEGITEEDIYAATAPFKGDIQQ 144
Query: 420 VPPMFSAIKV 429
PP SA+KV
Sbjct: 145 YPPAHSAVKV 154
>gi|375012581|ref|YP_004989569.1| tRNA pseudouridine 55 synthase [Owenweeksia hongkongensis DSM
17368]
gi|359348505|gb|AEV32924.1| tRNA pseudouridine 55 synthase [Owenweeksia hongkongensis DSM
17368]
Length = 238
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/126 (50%), Positives = 84/126 (66%), Gaps = 6/126 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK------KVGHAGTLDPMATGLLIVCVGKATKL 362
G ++L++KP WTSF K+R +K + KVGHAGTLDP+ATGLLI+C GK TK
Sbjct: 16 GQVLLIDKPLEWTSFDAVNKIRYAIKKRFSLKKIKVGHAGTLDPLATGLLIICTGKFTKQ 75
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ Y G K Y+G RLGE T ++D ++ V + P HI +E I KA +F G+I QVPP
Sbjct: 76 INEYMGQEKEYTGTIRLGETTPSYDLETEVNETFPTNHITEEAIHKATENFIGDIEQVPP 135
Query: 423 MFSAIK 428
+FSAIK
Sbjct: 136 LFSAIK 141
>gi|406024985|ref|YP_006705286.1| tRNA pseudouridine synthase B [Cardinium endosymbiont cEper1 of
Encarsia pergandiella]
gi|404432584|emb|CCM09866.1| tRNA pseudouridine synthase B [Cardinium endosymbiont cEper1 of
Encarsia pergandiella]
Length = 226
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 57/119 (47%), Positives = 84/119 (70%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+ +V+KP GWTSF V K+R +K+KK+GHAGTLDP+ATGLL++C G+ TK + QG+
Sbjct: 12 IFMVHKPLGWTSFDVVKKIRCALKIKKIGHAGTLDPLATGLLLLCSGRQTKTISTLQGLD 71
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+G LG+ T + D ++P ++HI +E + AAA+F G I Q+PP++SAIK+
Sbjct: 72 KVYTGQMVLGKTTPSMDLETPFNSLSSYDHITEEMVHAAAATFVGAITQIPPIYSAIKI 130
>gi|410029797|ref|ZP_11279627.1| tRNA pseudouridine synthase B [Marinilabilia sp. AK2]
Length = 228
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 64/123 (52%), Positives = 82/123 (66%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P+G + LV+KP WTSF V K+R +K+KKVGHAGTLDP+ATGLLIVC GK TK ++ +
Sbjct: 6 PYGEVFLVDKPYEWTSFDVVKKIRNALKIKKVGHAGTLDPLATGLLIVCTGKKTKSIETF 65
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
G K Y+G F LG+ T ++D + VI+ + EDI KA G+I QVPP SA
Sbjct: 66 MGQEKEYTGTFVLGKTTESFDLEREVIEVSDPSLLNIEDIIKATIQLTGDILQVPPAHSA 125
Query: 427 IKV 429
IKV
Sbjct: 126 IKV 128
>gi|305666141|ref|YP_003862428.1| putative tRNA pseudouridine synthase [Maribacter sp. HTCC2170]
gi|88707638|gb|EAQ99879.1| putative tRNA pseudouridine synthase [Maribacter sp. HTCC2170]
Length = 232
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 62/126 (49%), Positives = 84/126 (66%), Gaps = 6/126 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK------KVGHAGTLDPMATGLLIVCVGKATKL 362
G ++L++KP GW+SF KL+ +++ K KVGHAGTLDP+ATGLL++C GK TK
Sbjct: 12 GQLLLIDKPLGWSSFQAVNKLKWVIRRKFQLKKIKVGHAGTLDPLATGLLLICTGKFTKK 71
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ QG IK Y+G LG T ++D ++ V + P EHI DE IR A F G I QVPP
Sbjct: 72 INDLQGQIKEYTGTITLGATTPSFDLETEVNENFPIEHITDEMIRDTTAQFMGNIEQVPP 131
Query: 423 MFSAIK 428
+FSA+K
Sbjct: 132 IFSALK 137
>gi|313674894|ref|YP_004052890.1| tRNA pseudouridine synthase b [Marivirga tractuosa DSM 4126]
gi|312941592|gb|ADR20782.1| tRNA pseudouridine synthase B [Marivirga tractuosa DSM 4126]
Length = 231
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 62/122 (50%), Positives = 85/122 (69%), Gaps = 2/122 (1%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQG 368
G ++L++KP WTSF V KL+ +KVKK+GHAGTLDP+ATGLLI+C GK TK +++YQ
Sbjct: 11 GKVLLIDKPLNWTSFDVVKKLKFTLKVKKIGHAGTLDPLATGLLILCTGKMTKSIEKYQA 70
Query: 369 MIKGYSGVFRLGEATSTWDADS-PVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAI 427
K Y+G F LG T ++D ++ P Q+E H+ ED++ A F GEI Q PP+FSA+
Sbjct: 71 QEKEYTGEFTLGYTTPSYDLETEPEFQKET-SHLTLEDLKSNTAYFTGEIEQTPPIFSAV 129
Query: 428 KV 429
K
Sbjct: 130 KT 131
>gi|431798604|ref|YP_007225508.1| tRNA pseudouridine 55 synthase [Echinicola vietnamensis DSM 17526]
gi|430789369|gb|AGA79498.1| tRNA pseudouridine 55 synthase [Echinicola vietnamensis DSM 17526]
Length = 224
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 63/122 (51%), Positives = 82/122 (67%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P+G + LVNKP WTSF V K+R +K+KKVGHAGTLDP+ATGLLI+C GK TK ++ Y
Sbjct: 4 PYGEVFLVNKPYRWTSFDVVKKIRNTLKIKKVGHAGTLDPLATGLLIICAGKKTKSINDY 63
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
G K Y+G F LG+ T+++D + V H+ E I++A S G+I QVPP SA
Sbjct: 64 MGQEKEYTGTFVLGKTTASFDLEQEVEVVADPSHLTLEAIQEACKSLTGDIMQVPPTHSA 123
Query: 427 IK 428
IK
Sbjct: 124 IK 125
>gi|296269048|ref|YP_003651680.1| tRNA pseudouridine synthase B [Thermobispora bispora DSM 43833]
gi|296091835|gb|ADG87787.1| tRNA pseudouridine synthase B [Thermobispora bispora DSM 43833]
Length = 299
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 69/134 (51%), Positives = 83/134 (61%), Gaps = 5/134 (3%)
Query: 296 RSTELPPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVC 355
R+ PP P G +V+V+KP GWTS V K+RRL ++VGHAGTLDPMATG+L+V
Sbjct: 5 RARRTPP----PSG-LVIVDKPAGWTSHDVVAKIRRLAGTRRVGHAGTLDPMATGVLVVG 59
Query: 356 VGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRG 415
V KAT+L+ K Y RLG AT T DA+ V P HI DE + +A AS G
Sbjct: 60 VEKATRLLGHLALAEKTYEATIRLGVATDTDDAEGQVTATAPAGHITDERLHQAVASLTG 119
Query: 416 EIWQVPPMFSAIKV 429
EI QVPP SAIKV
Sbjct: 120 EIMQVPPQVSAIKV 133
>gi|441501636|ref|ZP_20983724.1| tRNA pseudouridine synthase B [Fulvivirga imtechensis AK7]
gi|441434598|gb|ELR68054.1| tRNA pseudouridine synthase B [Fulvivirga imtechensis AK7]
Length = 220
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 60/124 (48%), Positives = 85/124 (68%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P GT++LV+KP WTSF V KL+ +KVKK+GHAGTLDP+ATGLL++C GK TK +++Y
Sbjct: 6 PEGTVILVDKPLEWTSFDVVKKLKYFLKVKKIGHAGTLDPLATGLLVLCTGKMTKQIEKY 65
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
Q K Y+G LG+ T ++D ++ + H+++ +I +A F G I Q PP FSA
Sbjct: 66 QAQEKEYTGKLILGKTTPSFDLETEIDSETDITHLEEREIYEATQQFTGLIDQTPPAFSA 125
Query: 427 IKVR 430
IKV+
Sbjct: 126 IKVK 129
>gi|374376085|ref|ZP_09633743.1| tRNA pseudouridine synthase B [Niabella soli DSM 19437]
gi|373232925|gb|EHP52720.1| tRNA pseudouridine synthase B [Niabella soli DSM 19437]
Length = 266
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/120 (50%), Positives = 80/120 (66%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQG 368
G ++L++KP WTSF V K+R L++VKKVGHAGTLDP+ATGLL+VC GK TK ++ Y
Sbjct: 47 GAVLLIDKPLEWTSFDVVRKVRNLIRVKKVGHAGTLDPLATGLLVVCTGKFTKQINTYMA 106
Query: 369 MIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y+G F +G T T+D +S +P+EHI +I A F G I Q+PP SAIK
Sbjct: 107 REKEYTGTFTIGAVTPTYDLESSPENFKPYEHITLFEIEAATHQFTGTIQQIPPAHSAIK 166
>gi|254442056|ref|ZP_05055532.1| tRNA pseudouridine synthase B [Verrucomicrobiae bacterium DG1235]
gi|198256364|gb|EDY80672.1| tRNA pseudouridine synthase B [Verrucomicrobiae bacterium DG1235]
Length = 240
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 57/119 (47%), Positives = 83/119 (69%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP G TS V ++RR +++K++GHAGTLDPMATGLLI+ VGKATKL +
Sbjct: 10 VLLIDKPSGMTSHDVVDQVRRKLRMKRIGHAGTLDPMATGLLIILVGKATKLSQFLTSLD 69
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K YSG +LGE+T+T DAD + +P + E ++A +F G+ +Q PPMFSA+K+
Sbjct: 70 KTYSGTIKLGESTNTQDADGEITTTKPVPELTQEQAQEALNAFVGDQYQTPPMFSAVKI 128
>gi|227539721|ref|ZP_03969770.1| tRNA pseudouridine synthase [Sphingobacterium spiritivorum ATCC
33300]
gi|227240363|gb|EEI90378.1| tRNA pseudouridine synthase [Sphingobacterium spiritivorum ATCC
33300]
Length = 236
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 66/134 (49%), Positives = 84/134 (62%), Gaps = 2/134 (1%)
Query: 298 TELPPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVK--VKKVGHAGTLDPMATGLLIVC 355
TE T+ G M+L++KP WTSF V GK+R +K KVGHAGTLDP+ATGLLIVC
Sbjct: 6 TENSQTFHFAEGQMLLIDKPLTWTSFDVVGKIRNTIKPLKLKVGHAGTLDPLATGLLIVC 65
Query: 356 VGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRG 415
GK TK +D +Q K Y+G+ LG T ++D ++ + QR I +E I A SF G
Sbjct: 66 TGKMTKQIDSFQAEDKEYTGIITLGATTPSYDLETEIDQRFDISGITEEMIFDTARSFEG 125
Query: 416 EIWQVPPMFSAIKV 429
EI Q PP SAIK+
Sbjct: 126 EISQFPPAHSAIKI 139
>gi|255035039|ref|YP_003085660.1| tRNA pseudouridine synthase B [Dyadobacter fermentans DSM 18053]
gi|254947795|gb|ACT92495.1| tRNA pseudouridine synthase B [Dyadobacter fermentans DSM 18053]
Length = 244
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 60/121 (49%), Positives = 78/121 (64%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQG 368
G ++L++KP WTSF V KL+R K KK+GHAGTLDP+ATGLLI+C GK TK +D +Q
Sbjct: 22 GEVILIDKPLTWTSFDVANKLKRACKFKKIGHAGTLDPLATGLLILCTGKKTKQIDNFQA 81
Query: 369 MIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y+G LG+ T + D +S P +HI E + A G I QVPP+FSAIK
Sbjct: 82 QEKEYTGTLVLGKTTPSIDLESDFDAEYPTDHITPEVLENARQQLTGHIEQVPPLFSAIK 141
Query: 429 V 429
+
Sbjct: 142 I 142
>gi|116669985|ref|YP_830918.1| tRNA pseudouridine synthase B [Arthrobacter sp. FB24]
gi|189030155|sp|A0JUU8.1|TRUB_ARTS2 RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|116610094|gb|ABK02818.1| tRNA pseudouridine synthase B [Arthrobacter sp. FB24]
Length = 306
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 59/119 (49%), Positives = 79/119 (66%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP+GWTS V G++RRL +KVGHAGTLDPMATG+L++ + KAT+L+ G
Sbjct: 5 LVIVDKPQGWTSHDVVGRMRRLAGTRKVGHAGTLDPMATGVLVLGINKATRLLTYIVGTS 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ RLGE+T T DA+ V+ + + IR A A+ GEI QVP SAIKV
Sbjct: 65 KTYTATIRLGESTVTDDAEGEVVSSHSAAAVTEGAIRAAVAALTGEIQQVPSSVSAIKV 123
>gi|120437363|ref|YP_863049.1| tRNA pseudouridine synthase B [Gramella forsetii KT0803]
gi|117579513|emb|CAL67982.1| tRNA pseudouridine synthase B [Gramella forsetii KT0803]
Length = 254
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 83/126 (65%), Gaps = 6/126 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLV------KVKKVGHAGTLDPMATGLLIVCVGKATKL 362
G ++L +KP WTSF V K+R L+ K KVGHAGTLDP+ATGLLI+C GK TK
Sbjct: 30 GQVLLFDKPLNWTSFQVVNKVRWLIRKSCNIKKIKVGHAGTLDPLATGLLIICTGKFTKT 89
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+ + QG+IK Y+G F LG T ++D ++ + Q+ P HI +E + + F GEI Q PP
Sbjct: 90 IPQLQGLIKEYTGTFTLGATTPSFDLETEIDQKFPTNHITEELLNATSKKFIGEIEQTPP 149
Query: 423 MFSAIK 428
+FSA+K
Sbjct: 150 VFSALK 155
>gi|392965821|ref|ZP_10331240.1| tRNA pseudouridine synthase B [Fibrisoma limi BUZ 3]
gi|387844885|emb|CCH53286.1| tRNA pseudouridine synthase B [Fibrisoma limi BUZ 3]
Length = 230
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 60/121 (49%), Positives = 79/121 (65%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQG 368
G ++L++KP WTSF V KLRR K KK+GHAGTLDP+ATGLLI+C GK TK +D+YQ
Sbjct: 10 GQLILIDKPLEWTSFDVVNKLRRACKFKKIGHAGTLDPLATGLLILCTGKMTKQIDQYQA 69
Query: 369 MIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y+G LG+ T + D ++ I E I+ AA GEI Q+PP++SAI+
Sbjct: 70 QEKEYTGTLVLGKTTPSVDLETAFDGEFDVSGITPEQIQAAARQLTGEIQQIPPIYSAIR 129
Query: 429 V 429
V
Sbjct: 130 V 130
>gi|375145326|ref|YP_005007767.1| tRNA pseudouridine synthase B [Niastella koreensis GR20-10]
gi|361059372|gb|AEV98363.1| tRNA pseudouridine synthase B [Niastella koreensis GR20-10]
Length = 228
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/120 (50%), Positives = 79/120 (65%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQG 368
G ++L+NKP WTSF V K+R +K+KKVGHAGTLDP+ATG+LI+C GK TK ++ Y
Sbjct: 11 GQVLLINKPLEWTSFDVVRKIRNAIKIKKVGHAGTLDPLATGMLILCTGKFTKRINEYMA 70
Query: 369 MIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y+G LG T T+D +S + + I E ++ AA F GEI QVPPM SAIK
Sbjct: 71 QEKEYTGTITLGAITPTYDLESEPRDFKDYSSITPEQLQTIAAQFTGEIMQVPPMHSAIK 130
>gi|300773862|ref|ZP_07083731.1| tRNA pseudouridine synthase B [Sphingobacterium spiritivorum ATCC
33861]
gi|300760033|gb|EFK56860.1| tRNA pseudouridine synthase B [Sphingobacterium spiritivorum ATCC
33861]
Length = 236
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/134 (49%), Positives = 84/134 (62%), Gaps = 2/134 (1%)
Query: 298 TELPPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVK--VKKVGHAGTLDPMATGLLIVC 355
TE T+ G M+L++KP WTSF V GK+R +K KVGHAGTLDP+ATGLLIVC
Sbjct: 6 TENFQTFHFAEGQMLLIDKPLTWTSFDVVGKIRNTLKPLKLKVGHAGTLDPLATGLLIVC 65
Query: 356 VGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRG 415
GK TK +D +Q K Y+G+ LG T ++D ++ + QR I +E I A SF G
Sbjct: 66 TGKMTKQIDSFQAEDKEYTGIITLGATTPSYDLETEIDQRFDISGITEEMIFDTARSFEG 125
Query: 416 EIWQVPPMFSAIKV 429
EI Q PP SAIK+
Sbjct: 126 EINQFPPAHSAIKI 139
>gi|340627793|ref|YP_004746245.1| putative tRNA pseudouridine synthase B TRUB [Mycobacterium canettii
CIPT 140010059]
gi|433627908|ref|YP_007261537.1| tRNA pseudouridine synthase B [Mycobacterium canettii CIPT
140060008]
gi|433642977|ref|YP_007288736.1| tRNA pseudouridine synthase B [Mycobacterium canettii CIPT
140070008]
gi|340005983|emb|CCC45150.1| putative tRNA pseudouridine synthase B TRUB (tRNA pseudouridine 55
synthase) (PSI55 synthase) (pseudouridylate synthase)
(uracil hydrolyase) [Mycobacterium canettii CIPT
140010059]
gi|432155514|emb|CCK52764.1| tRNA pseudouridine synthase B [Mycobacterium canettii CIPT
140060008]
gi|432159525|emb|CCK56833.1| tRNA pseudouridine synthase B [Mycobacterium canettii CIPT
140070008]
Length = 296
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/119 (48%), Positives = 78/119 (65%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V G+ RR+ ++VGHAGTLDPMATG+L++ + +ATK++
Sbjct: 8 IVVVDKPAGMTSHDVVGRCRRIFSTRRVGHAGTLDPMATGVLVIGIERATKILGLLTAAS 67
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ RLG+ TST DA+ V+Q P EH+ E I A A RGEI QVP SA+KV
Sbjct: 68 KSYAATIRLGQTTSTEDAEGQVLQSVPAEHLTVEAIEAAMAGLRGEIRQVPSAVSAVKV 126
>gi|86134977|ref|ZP_01053559.1| tRNA pseudouridine synthase B [Polaribacter sp. MED152]
gi|85821840|gb|EAQ42987.1| tRNA pseudouridine synthase B [Polaribacter sp. MED152]
Length = 231
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/126 (47%), Positives = 83/126 (65%), Gaps = 6/126 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK------KVGHAGTLDPMATGLLIVCVGKATKL 362
G ++L++KP WTSF V KLR +K + KVGHAGTLDP+ATGLLI+C GK TK
Sbjct: 9 GQVLLIDKPLTWTSFQVVNKLRWHIKQRFNIKKIKVGHAGTLDPLATGLLIICTGKQTKE 68
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ YQG IK Y+G F +G T ++D ++ V + EHI + +++ F G+I Q PP
Sbjct: 69 INTYQGQIKEYTGTFTIGSTTPSYDLETEVDETFSTEHITSDLLKETTLQFIGDIQQKPP 128
Query: 423 MFSAIK 428
+FSAIK
Sbjct: 129 IFSAIK 134
>gi|433631889|ref|YP_007265517.1| tRNA pseudouridine synthase B [Mycobacterium canettii CIPT
140070010]
gi|432163482|emb|CCK60892.1| tRNA pseudouridine synthase B [Mycobacterium canettii CIPT
140070010]
Length = 299
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/119 (48%), Positives = 78/119 (65%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V G+ RR+ ++VGHAGTLDPMATG+L++ + +ATK++
Sbjct: 8 IVVVDKPAGMTSHDVVGRCRRIFSTRRVGHAGTLDPMATGVLVIGIERATKILGLLTAAS 67
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ RLG+ TST DA+ V+Q P EH+ E I A A RGEI QVP SA+KV
Sbjct: 68 KSYAATIRLGQTTSTEDAEGQVLQSVPAEHLTVEAIEAAMAGLRGEIRQVPSAVSAVKV 126
>gi|289705311|ref|ZP_06501709.1| tRNA pseudouridine synthase B [Micrococcus luteus SK58]
gi|289557974|gb|EFD51267.1| tRNA pseudouridine synthase B [Micrococcus luteus SK58]
Length = 321
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/119 (50%), Positives = 79/119 (66%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VLV+KP+GWTS V G++RRL +KVGHAGTLDPMATGLL+V V KAT+L+ G
Sbjct: 21 VVLVDKPQGWTSHDVVGRVRRLAGTRKVGHAGTLDPMATGLLVVGVNKATRLLTAITGTD 80
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ RLG++T T DA+ V+Q + E + + A+ GEI QVP SA+KV
Sbjct: 81 KTYTATIRLGQSTVTDDAEGEVVQTRLANAVTPERVAEQVAALTGEILQVPSAVSAVKV 139
>gi|390444057|ref|ZP_10231840.1| tRNA pseudouridine synthase B [Nitritalea halalkaliphila LW7]
gi|389665288|gb|EIM76759.1| tRNA pseudouridine synthase B [Nitritalea halalkaliphila LW7]
Length = 233
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/124 (49%), Positives = 75/124 (60%)
Query: 306 GPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDR 365
P+G + VNKP WTSF V K+R ++VKKVGHAGTLDP+ATGLLI+C GK TK ++
Sbjct: 9 APYGEVFFVNKPYTWTSFDVVKKIRHALQVKKVGHAGTLDPLATGLLIICAGKMTKQIES 68
Query: 366 YQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFS 425
Y K Y F LG T ++D + VI I + + A FRG I QVPP S
Sbjct: 69 YMAQEKAYEATFVLGATTESFDLEKEVIPVADPSGIDATQVEEVLARFRGAIEQVPPQHS 128
Query: 426 AIKV 429
AIKV
Sbjct: 129 AIKV 132
>gi|436837528|ref|YP_007322744.1| tRNA pseudouridine synthase B [Fibrella aestuarina BUZ 2]
gi|384068941|emb|CCH02151.1| tRNA pseudouridine synthase B [Fibrella aestuarina BUZ 2]
Length = 229
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/119 (48%), Positives = 78/119 (65%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP+ WTSF V KLRR K KK+GHAGTLDP+ATGLLI+C GK TK +D YQ
Sbjct: 10 LILIDKPREWTSFDVVNKLRRACKFKKIGHAGTLDPLATGLLILCTGKMTKQIDSYQAQE 69
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+G LG+ T + D ++ I E +R AAA G I Q+PP++SA++V
Sbjct: 70 KEYTGTLVLGKTTPSVDLETDFDAEFDVSGITPEMVRDAAAQLTGTIQQIPPIYSAVRV 128
>gi|295136263|ref|YP_003586939.1| tRNA pseudouridine synthase B [Zunongwangia profunda SM-A87]
gi|294984278|gb|ADF54743.1| tRNA pseudouridine synthase B [Zunongwangia profunda SM-A87]
Length = 239
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 85/126 (67%), Gaps = 6/126 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLV------KVKKVGHAGTLDPMATGLLIVCVGKATKL 362
G ++L +KP WTSF + K+R ++ K KVGHAGTLDP+ATGLLI+C GK TK
Sbjct: 14 GQILLFDKPLNWTSFQLVNKVRWMIRKSCDIKKIKVGHAGTLDPLATGLLIICTGKFTKR 73
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+ QG IK Y+G F LG T+++D ++ + + P +HI +E+I + SF G+I Q+PP
Sbjct: 74 IPELQGQIKEYTGTFCLGSTTASYDLETEIDETFPIDHITEENIAETTKSFIGDIEQLPP 133
Query: 423 MFSAIK 428
+FSA+K
Sbjct: 134 VFSALK 139
>gi|443289484|ref|ZP_21028578.1| tRNA pseudouridine synthase B (tRNA pseudouridine 55 synthase)
(Psi55 synthase) (Pseudouridylate synthase) (Uracil
hydrolyase) [Micromonospora lupini str. Lupac 08]
gi|385887637|emb|CCH16652.1| tRNA pseudouridine synthase B (tRNA pseudouridine 55 synthase)
(Psi55 synthase) (Pseudouridylate synthase) (Uracil
hydrolyase) [Micromonospora lupini str. Lupac 08]
Length = 294
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/119 (47%), Positives = 79/119 (66%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+KP G TS V ++RRL K ++VGH GTLDPMATG+L++ VG+AT+L+ G
Sbjct: 6 LIVVDKPGGMTSHDVVARIRRLAKTRRVGHGGTLDPMATGVLVIGVGRATRLLTYVIGAG 65
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+G RLG+AT T DA+ VI P + D+ IR A + GE+ QVP SAIK+
Sbjct: 66 KSYTGTIRLGQATVTDDAEGDVIASTPAGQVTDDAIRSALTALSGEVDQVPSAVSAIKI 124
>gi|336308023|gb|AEI51125.1| tRNA pseudouridine synthase B [Runella slithyformis DSM 19594]
Length = 231
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/121 (47%), Positives = 81/121 (66%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQG 368
G ++L+NKP WTSF K+++ + KK+GHAGTLDP+ATGLLI+C GK TK +D YQG
Sbjct: 12 GEVILLNKPLTWTSFDAVNKIKKACRFKKIGHAGTLDPLATGLLILCTGKKTKEIDTYQG 71
Query: 369 MIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y+G LG+ T + D ++P P +HI E ++ A A GE+ Q PP++SA+K
Sbjct: 72 AEKEYTGKMVLGKTTPSIDLETPFDGEYPIDHITPELMQAAVAKLTGELSQYPPIYSAVK 131
Query: 429 V 429
+
Sbjct: 132 M 132
>gi|344202340|ref|YP_004787483.1| tRNA pseudouridine synthase B [Muricauda ruestringensis DSM 13258]
gi|343954262|gb|AEM70061.1| tRNA pseudouridine synthase B [Muricauda ruestringensis DSM 13258]
Length = 234
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 60/126 (47%), Positives = 81/126 (64%), Gaps = 6/126 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK------KVGHAGTLDPMATGLLIVCVGKATKL 362
G ++L++KP WTSF L+ ++ K K+GHAGTLDP+ATGLLI+C GK TK
Sbjct: 10 GQILLIDKPLEWTSFQAVNALKWAIRKKFGLKKIKIGHAGTLDPLATGLLIICTGKFTKK 69
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+ QG +K Y+G F LG T ++D ++ V Q P HI D I++A F GEI QVPP
Sbjct: 70 IPELQGQVKEYTGTFTLGATTPSYDLETEVNQTFPTGHITDASIKEATKKFLGEIEQVPP 129
Query: 423 MFSAIK 428
+FSA+K
Sbjct: 130 IFSALK 135
>gi|72161185|ref|YP_288842.1| tRNA pseudouridine synthase B [Thermobifida fusca YX]
gi|91208108|sp|Q47RU8.1|TRUB_THEFY RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|71914917|gb|AAZ54819.1| tRNA pseudouridine synthase B [Thermobifida fusca YX]
Length = 293
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/120 (47%), Positives = 80/120 (66%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP GWTS V ++RRL ++VGHAGTLDPMATG+L+V VGKAT+L+
Sbjct: 5 VVIVDKPAGWTSHDVVARVRRLAGTRRVGHAGTLDPMATGVLVVGVGKATRLLGYLALTE 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVR 430
K Y RLG++T+T DA+ +++R P +HI + + + G I QVPP SA+KVR
Sbjct: 65 KVYEATIRLGQSTTTDDAEGELLERRPADHIDEAAVHAGTRALTGVIHQVPPQVSAVKVR 124
>gi|271963652|ref|YP_003337848.1| tRNA pseudouridine 55 synthase [Streptosporangium roseum DSM 43021]
gi|270506827|gb|ACZ85105.1| tRNA pseudouridine 55 synthase [Streptosporangium roseum DSM 43021]
Length = 299
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/135 (47%), Positives = 85/135 (62%), Gaps = 5/135 (3%)
Query: 295 SRSTELPPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIV 354
+R+ PP P G +V+V+KP WTS V GKLR + ++VGHAGTLDPMATG+L+V
Sbjct: 4 ARAKRTPP----PSG-LVIVDKPAEWTSHDVVGKLRGIAGTRRVGHAGTLDPMATGVLVV 58
Query: 355 CVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFR 414
V KAT+L+ KGY RLG++T+T DA+ +I + +E IRK A+
Sbjct: 59 GVEKATRLLGHLALTEKGYDATIRLGQSTNTDDAEGEIISASSAAGVAEEAIRKGVAALT 118
Query: 415 GEIWQVPPMFSAIKV 429
G+I QVPP SAIKV
Sbjct: 119 GQIMQVPPQVSAIKV 133
>gi|124003203|ref|ZP_01688053.1| tRNA pseudouridine synthase B [Microscilla marina ATCC 23134]
gi|123991301|gb|EAY30732.1| tRNA pseudouridine synthase B [Microscilla marina ATCC 23134]
Length = 244
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 83/125 (66%), Gaps = 4/125 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK----KVGHAGTLDPMATGLLIVCVGKATKLVD 364
G ++L++KP WTSF V K+R L++ K KVGHAGTLDP+ATGLLI+C GK TK ++
Sbjct: 14 GEVLLLDKPLEWTSFDVVAKVRNLIRKKEGKVKVGHAGTLDPLATGLLILCTGKKTKTIE 73
Query: 365 RYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMF 424
YQ K Y+G LG T ++DA++ V Q HI + I++ F G+I Q+PPMF
Sbjct: 74 AYQAQQKEYTGEITLGATTPSFDAETEVNQTFDIAHIDESMIQETVQRFVGDIDQIPPMF 133
Query: 425 SAIKV 429
SA+KV
Sbjct: 134 SAVKV 138
>gi|268316870|ref|YP_003290589.1| tRNA pseudouridine synthase B [Rhodothermus marinus DSM 4252]
gi|345303216|ref|YP_004825118.1| tRNA pseudouridine synthase B [Rhodothermus marinus SG0.5JP17-172]
gi|262334404|gb|ACY48201.1| tRNA pseudouridine synthase B [Rhodothermus marinus DSM 4252]
gi|345112449|gb|AEN73281.1| tRNA pseudouridine synthase B [Rhodothermus marinus SG0.5JP17-172]
Length = 249
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 64/131 (48%), Positives = 91/131 (69%), Gaps = 3/131 (2%)
Query: 300 LPPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKA 359
LP WD ++L++KPKG TSF V +LR+L++V+K+GHAGTLDPMATGLLI +G+A
Sbjct: 19 LPERWDA---AVLLIDKPKGITSFDVIRRLRKLLRVRKIGHAGTLDPMATGLLICLIGRA 75
Query: 360 TKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQ 419
T+ + + K Y GV RLGE T ++DA++ V++R WEH+ D D+ + F GEI Q
Sbjct: 76 TRWMTHFMAQEKEYEGVMRLGEITPSYDAETEVVERRSWEHLTDADLERVRHQFVGEIVQ 135
Query: 420 VPPMFSAIKVR 430
P +SA+KV+
Sbjct: 136 QVPAYSAVKVK 146
>gi|404424370|ref|ZP_11005956.1| tRNA pseudouridine synthase B [Mycobacterium fortuitum subsp.
fortuitum DSM 46621]
gi|403651465|gb|EJZ06590.1| tRNA pseudouridine synthase B [Mycobacterium fortuitum subsp.
fortuitum DSM 46621]
Length = 295
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 59/119 (49%), Positives = 77/119 (64%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V G+ RRL +KVGHAGTLDPMATG+L+V + +ATK++
Sbjct: 8 LVIVDKPAGMTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLVVGIERATKILGLLTATD 67
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K YS RLG+ T+T DA+ V+Q H+ D+ I A A RG+I QVP SAIKV
Sbjct: 68 KSYSATIRLGQTTTTEDAEGEVLQSVSAVHVTDDQIEAAVAGLRGDIEQVPSAVSAIKV 126
>gi|374386616|ref|ZP_09644115.1| tRNA pseudouridine synthase B [Odoribacter laneus YIT 12061]
gi|373223789|gb|EHP46134.1| tRNA pseudouridine synthase B [Odoribacter laneus YIT 12061]
Length = 233
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 81/125 (64%), Gaps = 4/125 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK----KVGHAGTLDPMATGLLIVCVGKATKLVD 364
G +VLV+KP WTSF V K+R ++ K KVGHAGTLDP+ATGL+I+C+GK TK ++
Sbjct: 13 GALVLVDKPLKWTSFDVVNKIRWCLRKKYGKLKVGHAGTLDPLATGLVIICIGKWTKEIE 72
Query: 365 RYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMF 424
RY G K Y LG T ++D ++ + PWEHI E K F GEI Q+PP++
Sbjct: 73 RYMGQQKEYLARICLGATTPSFDLETEINANYPWEHITRESFEKVLLQFVGEIQQIPPVY 132
Query: 425 SAIKV 429
SA+++
Sbjct: 133 SAVRI 137
>gi|383819288|ref|ZP_09974564.1| tRNA pseudouridine synthase B [Mycobacterium phlei RIVM601174]
gi|383337259|gb|EID15640.1| tRNA pseudouridine synthase B [Mycobacterium phlei RIVM601174]
Length = 293
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 58/119 (48%), Positives = 78/119 (65%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V G+ RR +KVGHAGTLDPMATG+L+V V +ATK++
Sbjct: 6 LVVVDKPAGMTSHDVVGRCRRFFGTRKVGHAGTLDPMATGVLVVGVERATKILGLLTATD 65
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ RLG+ TST DA+ ++Q P + + D+ I A A+ RGEI Q+P SAIKV
Sbjct: 66 KSYTATIRLGQTTSTEDAEGEILQTTPADGVTDDQIEAAVAALRGEIDQIPSAVSAIKV 124
>gi|284035721|ref|YP_003385651.1| tRNA pseudouridine synthase B [Spirosoma linguale DSM 74]
gi|283815014|gb|ADB36852.1| tRNA pseudouridine synthase B [Spirosoma linguale DSM 74]
Length = 241
Score = 121 bits (303), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 58/121 (47%), Positives = 79/121 (65%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQG 368
G ++L++KP WTSF V KL+ K KK+GHAGTLDP+ATGLLI+C GK TK +D+YQ
Sbjct: 12 GQVILIDKPLTWTSFDVANKLKYACKFKKIGHAGTLDPLATGLLILCTGKMTKQIDQYQA 71
Query: 369 MIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y+G LG+ T + D ++ I E I++AA GEI QVPP++SA++
Sbjct: 72 QEKEYTGTLVLGKTTPSVDLETAFDAEFDTTGITPEQIQEAARQLTGEILQVPPIYSAVR 131
Query: 429 V 429
V
Sbjct: 132 V 132
>gi|339450771|ref|ZP_08654141.1| pseudouridylate synthase [Leuconostoc lactis KCTC 3528]
Length = 223
Score = 121 bits (303), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 66/135 (48%), Positives = 83/135 (61%), Gaps = 4/135 (2%)
Query: 305 DGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVD 364
+ P +++VNKPKG TSF V K+RR V KKVGHAGTLDP G+L+V +GKATKL+D
Sbjct: 4 NNPVDGILVVNKPKGVTSFDVVAKVRRAVGQKKVGHAGTLDPNVDGVLVVALGKATKLID 63
Query: 365 RYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPM 423
Q K Y G LG AT T D D V+ +P D I +A A G I QVPPM
Sbjct: 64 ELQARPKRYIGEITLGFATETEDLDGDVVAEQPITTPYTDAAIDQAIAQLNGPIQQVPPM 123
Query: 424 FSAIKV---RVFHFS 435
FSA+KV R++ ++
Sbjct: 124 FSAVKVAGKRLYEYA 138
>gi|334336732|ref|YP_004541884.1| tRNA pseudouridine synthase B [Isoptericola variabilis 225]
gi|334107100|gb|AEG43990.1| tRNA pseudouridine synthase B [Isoptericola variabilis 225]
Length = 318
Score = 121 bits (303), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 67/136 (49%), Positives = 85/136 (62%), Gaps = 3/136 (2%)
Query: 296 RSTELPPT-WDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIV 354
RS E PP P G +V V+KP GWTS V G+ RRL +KVGHAGTLDPMATG+L+V
Sbjct: 2 RSDERPPRRATAPDGLLV-VDKPAGWTSHDVVGRCRRLAGTRKVGHAGTLDPMATGVLVV 60
Query: 355 CVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQRE-PWEHIKDEDIRKAAASF 413
VG+AT+L+ G K Y RLG +T+T DA+ V+ + + D D+ +A A+
Sbjct: 61 GVGRATRLLTYVVGADKAYDATIRLGVSTTTDDAEGEVVAASGTGDGVDDADLARAVAAL 120
Query: 414 RGEIWQVPPMFSAIKV 429
GEI QVP SAIKV
Sbjct: 121 TGEIRQVPTTVSAIKV 136
>gi|373496222|ref|ZP_09586770.1| tRNA pseudouridine synthase B [Fusobacterium sp. 12_1B]
gi|404368916|ref|ZP_10974263.1| tRNA pseudouridine synthase B [Fusobacterium ulcerans ATCC 49185]
gi|313688211|gb|EFS25046.1| tRNA pseudouridine synthase B [Fusobacterium ulcerans ATCC 49185]
gi|371966133|gb|EHO83625.1| tRNA pseudouridine synthase B [Fusobacterium sp. 12_1B]
Length = 286
Score = 121 bits (303), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 81/119 (68%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ VNKP G TSF V KLRR++ +K+GH GTLDP+A G+L+VC+GKATK+V +G
Sbjct: 4 IINVNKPSGITSFDVVRKLRRILHERKIGHTGTLDPLAQGVLVVCIGKATKMVQDIEGYE 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ F LG T T+D + VI++ I + +++ +F GEI Q+PPM+SA+KV
Sbjct: 64 KTYTAGFELGYRTDTYDTEGQVIEKREVNDITLDKLQEVLKNFIGEIEQIPPMYSALKV 122
>gi|393785925|ref|ZP_10374069.1| tRNA pseudouridine synthase B [Bacteroides nordii CL02T12C05]
gi|392661039|gb|EIY54636.1| tRNA pseudouridine synthase B [Bacteroides nordii CL02T12C05]
Length = 237
Score = 121 bits (303), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 63/127 (49%), Positives = 80/127 (62%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ NKP GWTSF V G +R R +KVKK VGHAGTLDP+ATG++IVC GKATK
Sbjct: 6 GEVLFFNKPLGWTSFKVVGHIRYHICRRMKVKKLKVGHAGTLDPLATGVMIVCTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y +LG T ++D + + P EHI E I +A F GEI Q+PP
Sbjct: 66 IEEFQYHTKEYIATIQLGATTPSYDLEHEIDATYPTEHITREKIEEALKQFLGEIQQIPP 125
Query: 423 MFSAIKV 429
FSA KV
Sbjct: 126 AFSACKV 132
>gi|310778247|ref|YP_003966580.1| tRNA pseudouridine synthase B [Ilyobacter polytropus DSM 2926]
gi|309747570|gb|ADO82232.1| tRNA pseudouridine synthase B [Ilyobacter polytropus DSM 2926]
Length = 286
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 82/119 (68%), Gaps = 1/119 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ ++K G TSF V +L+R++K+KK+GH GTLDPMATG+L++C G+AT+L +G
Sbjct: 4 IINIDKSSGMTSFDVVRRLKRILKMKKIGHTGTLDPMATGILVICTGRATRLAQDIEGQR 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y F LG T+T+D + + R + K E++ KA +FRGEI Q+PPM+SA+KV
Sbjct: 64 KTYIAGFELGYKTTTYDTEGEITHRTD-KGAKREELEKALENFRGEIDQIPPMYSALKV 121
>gi|302832331|ref|XP_002947730.1| hypothetical protein VOLCADRAFT_87889 [Volvox carteri f.
nagariensis]
gi|300267078|gb|EFJ51263.1| hypothetical protein VOLCADRAFT_87889 [Volvox carteri f.
nagariensis]
Length = 175
Score = 120 bits (302), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 63/126 (50%), Positives = 78/126 (61%), Gaps = 12/126 (9%)
Query: 288 SGEPYIVSRSTELPPTWDGPFGT---------MVLVNKPKGWTSFTVCGKLRRLVK---V 335
S P I +S + PT P ++LV+KP GWTSF VC K+R L+K V
Sbjct: 31 SNTPVITPKSKRVSPTSLKPGAIEDVNILQNGVILVDKPLGWTSFDVCAKIRNLLKFIGV 90
Query: 336 KKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQR 395
KKVGHAGTLDP ATGLLIVC G+ TK D + K YSG RLGE T+++DA+ V +R
Sbjct: 91 KKVGHAGTLDPHATGLLIVCTGRGTKFCDDFMAQDKEYSGTMRLGEGTASYDAECEVTER 150
Query: 396 EPWEHI 401
PWEH+
Sbjct: 151 LPWEHV 156
>gi|119964316|ref|YP_947332.1| tRNA pseudouridine synthase B [Arthrobacter aurescens TC1]
gi|189030154|sp|A1R520.1|TRUB_ARTAT RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|119951175|gb|ABM10086.1| tRNA pseudouridine synthase B [Arthrobacter aurescens TC1]
Length = 311
Score = 120 bits (302), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 58/119 (48%), Positives = 77/119 (64%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP+GWTS V G++RRL +KVGHAGTLDPMATG+L++ + KAT+L+ G
Sbjct: 5 LVIVDKPQGWTSHDVVGRMRRLAGTRKVGHAGTLDPMATGVLVLGINKATRLLTYIVGTS 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ RLGE T T DA+ V + HI D+ + A+ G I QVP SAIKV
Sbjct: 65 KTYTATIRLGETTITDDAEGEVTEARTAAHITDDAVAVGVAALTGPIQQVPSSVSAIKV 123
>gi|373251779|ref|ZP_09539897.1| tRNA pseudouridine synthase B [Nesterenkonia sp. F]
Length = 337
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 80/119 (67%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VLV+KP GWTS V G++R+L +KVGHAGTLDPMATG+L+V + +AT+L+ G+
Sbjct: 16 LVLVDKPAGWTSHDVVGRIRKLAGTRKVGHAGTLDPMATGVLVVGINRATRLLTHIVGVS 75
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ RLG +T+T DAD +++ + E +++ A+ GEI QVP SAIKV
Sbjct: 76 KTYTATIRLGRSTTTDDADGELVETRFANAVTSERLQEEIAALTGEIMQVPTTVSAIKV 134
>gi|363582349|ref|ZP_09315159.1| tRNA pseudouridine synthase B [Flavobacteriaceae bacterium HQM9]
Length = 229
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 83/126 (65%), Gaps = 6/126 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK------KVGHAGTLDPMATGLLIVCVGKATKL 362
G +L++KP W+SF V KLR L++ + KVGHAGTLDP+ATGLL++C GK+TK
Sbjct: 9 GQTLLIDKPLEWSSFQVVNKLRWLIRKQYDIKKIKVGHAGTLDPLATGLLLICTGKSTKT 68
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ QG IK Y+G LG T ++D ++ + + P +H+ +E I A F G+I Q PP
Sbjct: 69 INELQGQIKEYTGTIVLGATTPSYDLETEINAQFPTDHLTEEGIHAATKQFVGKIEQYPP 128
Query: 423 MFSAIK 428
+FSA+K
Sbjct: 129 VFSALK 134
>gi|86143827|ref|ZP_01062203.1| putative tRNA pseudouridine synthase [Leeuwenhoekiella blandensis
MED217]
gi|85829870|gb|EAQ48332.1| putative tRNA pseudouridine synthase [Leeuwenhoekiella blandensis
MED217]
Length = 237
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/126 (47%), Positives = 82/126 (65%), Gaps = 6/126 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLV----KVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++L +KP WTSF + K+R L+ K+KK VGHAGTLDP+ATGLLI+C GK TK
Sbjct: 11 GQVLLFDKPLNWTSFQLVNKVRWLIRKTYKIKKIKVGHAGTLDPLATGLLIICTGKFTKR 70
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ + G K Y+G LG T ++D ++ + Q P H+ DE I+K A F G I Q PP
Sbjct: 71 IEEFMGQEKEYTGTIVLGATTPSYDLETEIDQTFPTAHLNDELIKKTTAQFTGSIQQQPP 130
Query: 423 MFSAIK 428
+FSA+K
Sbjct: 131 VFSALK 136
>gi|312128869|ref|YP_003996209.1| tRNA pseudouridine synthase b [Leadbetterella byssophila DSM 17132]
gi|311905415|gb|ADQ15856.1| tRNA pseudouridine synthase B [Leadbetterella byssophila DSM 17132]
Length = 226
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 80/123 (65%), Gaps = 2/123 (1%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVKKV--GHAGTLDPMATGLLIVCVGKATKLVDRY 366
G ++L++KP WTSF KL+ K K+ GHAGTLDP+ATGLL++CVGK TK ++ Y
Sbjct: 8 GQVLLIDKPLNWTSFDAVNKLKYAFKPHKIKIGHAGTLDPLATGLLVICVGKKTKEIETY 67
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
QG K Y+G LG T ++D ++ + P HI E + +A SF G I Q+PP+FSA
Sbjct: 68 QGQKKVYTGKIMLGSTTPSFDLETEIDATYPTAHITKEGLEEARKSFLGTIAQIPPVFSA 127
Query: 427 IKV 429
IKV
Sbjct: 128 IKV 130
>gi|385809225|ref|YP_005845621.1| tRNA pseudouridine synthase B [Ignavibacterium album JCM 16511]
gi|383801273|gb|AFH48353.1| tRNA pseudouridine synthase B [Ignavibacterium album JCM 16511]
Length = 241
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/120 (45%), Positives = 81/120 (67%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQG 368
G ++L++KP W+SF V K+R+ + VKKVGHAGTLDP ATGL+I+C G TK + RYQ
Sbjct: 17 GEVILIDKPAFWSSFKVVHKVRKAIGVKKVGHAGTLDPFATGLIILCTGNKTKEITRYQD 76
Query: 369 MIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
+ K Y+GV LG+++ + D ++ + E + +E I + F GEI Q+PPM+SA+K
Sbjct: 77 LKKTYTGVITLGKSSDSMDTETEIKNYPIPEDLTEEKILNTSKIFVGEIEQIPPMYSAVK 136
>gi|452910831|ref|ZP_21959508.1| tRNA pseudouridine synthase B [Kocuria palustris PEL]
gi|452834003|gb|EME36807.1| tRNA pseudouridine synthase B [Kocuria palustris PEL]
Length = 329
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/141 (47%), Positives = 83/141 (58%), Gaps = 7/141 (4%)
Query: 295 SRSTELP---PTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGL 351
RS + P P+ P G +V+V+KPKGWTS V G++RRL +KVGHAGTLDPMATG+
Sbjct: 11 GRSAQTPRPDPSLTVPEG-LVVVDKPKGWTSHDVVGRMRRLCGTRKVGHAGTLDPMATGV 69
Query: 352 LIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQR---EPWEHIKDEDIRK 408
LIV VG+ TKL+ G K Y RLG T T DA+ + + DE IR
Sbjct: 70 LIVGVGRGTKLLTHLVGADKTYEATIRLGATTVTEDAEGELTGTADPSAVAAVTDEQIRA 129
Query: 409 AAASFRGEIWQVPPMFSAIKV 429
A A G++ QVP SAIKV
Sbjct: 130 AVAELTGDLEQVPSAVSAIKV 150
>gi|373459715|ref|ZP_09551482.1| tRNA pseudouridine synthase B [Caldithrix abyssi DSM 13497]
gi|371721379|gb|EHO43150.1| tRNA pseudouridine synthase B [Caldithrix abyssi DSM 13497]
Length = 244
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/122 (45%), Positives = 79/122 (64%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQG 368
G + L+NKP+ WTSF V K+R +K+KKVGHAGTLDP ATGLLIV G+ T+ + ++
Sbjct: 18 GFIALINKPQDWTSFDVVNKIRHALKIKKVGHAGTLDPFATGLLIVGAGRGTRALSQFMN 77
Query: 369 MIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
+ K Y V RLG T T+D V++ + + I +D+ +GE+ QVPPM+SA K
Sbjct: 78 LDKTYRAVIRLGVETDTYDVTGKVVKEQDTQMITRQDVEAVINEMQGEMLQVPPMYSAKK 137
Query: 429 VR 430
++
Sbjct: 138 IK 139
>gi|374595815|ref|ZP_09668819.1| tRNA pseudouridine synthase B [Gillisia limnaea DSM 15749]
gi|373870454|gb|EHQ02452.1| tRNA pseudouridine synthase B [Gillisia limnaea DSM 15749]
Length = 233
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 82/126 (65%), Gaps = 6/126 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLV------KVKKVGHAGTLDPMATGLLIVCVGKATKL 362
G ++L +KP GWTSF + K+R L+ K KVGHAGTLDP+A+GLLI+C GK TK
Sbjct: 14 GQILLFDKPLGWTSFQLVNKVRWLIRKSCNIKKIKVGHAGTLDPLASGLLILCTGKFTKK 73
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ YQ K Y+G LG T ++D ++ V + +HI +EDI A F GEI QVPP
Sbjct: 74 IEEYQAQEKEYTGTITLGATTPSYDMETEVNESFGIDHISEEDIIGATLEFLGEIDQVPP 133
Query: 423 MFSAIK 428
+FSA+K
Sbjct: 134 VFSALK 139
>gi|339443398|ref|YP_004709403.1| pseudouridine synthase [Clostridium sp. SY8519]
gi|338902799|dbj|BAK48301.1| pseudouridine synthase [Clostridium sp. SY8519]
Length = 312
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/120 (50%), Positives = 78/120 (65%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V K KG+TSF V K+R + KK+GH GTLDP ATG+L VC+GKATK+ + G
Sbjct: 5 IIIVKKEKGFTSFDVVAKMRGICGQKKIGHTGTLDPDATGVLPVCLGKATKICELLAGTD 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVR 430
K Y RLG T T D+ V R P EHI E++R+AA F G Q+PPM+SA+KVR
Sbjct: 65 KEYEASLRLGITTDTQDSSGTVTGRFPTEHITPEEVREAAEQFHGFTEQIPPMYSALKVR 124
>gi|392390817|ref|YP_006427420.1| tRNA pseudouridine synthase B [Ornithobacterium rhinotracheale DSM
15997]
gi|390521895|gb|AFL97626.1| tRNA pseudouridine synthase B [Ornithobacterium rhinotracheale DSM
15997]
Length = 231
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/127 (48%), Positives = 78/127 (61%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK------KVGHAGTLDPMATGLLIVCVGKATKL 362
G + L++KP WTSF V K+R ++ KVGHAGTLDP ATGLLIVCVGK TK
Sbjct: 11 GKVFLIDKPLDWTSFDVVKKIRYNIRKNYNLKKFKVGHAGTLDPKATGLLIVCVGKFTKK 70
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+D YQ K Y+G +LG T ++D + P EH+ DE I A F GEI Q+PP
Sbjct: 71 IDTYQAQEKTYTGTIKLGATTESYDTEKPENAFFETEHLTDEMIHNATQKFIGEIEQLPP 130
Query: 423 MFSAIKV 429
M SA+K+
Sbjct: 131 MHSAVKL 137
>gi|88801889|ref|ZP_01117417.1| putative tRNA pseudouridine synthase [Polaribacter irgensii 23-P]
gi|88782547|gb|EAR13724.1| putative tRNA pseudouridine synthase [Polaribacter irgensii 23-P]
Length = 236
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/126 (47%), Positives = 80/126 (63%), Gaps = 6/126 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR------RLVKVKKVGHAGTLDPMATGLLIVCVGKATKL 362
G ++L++KP W+SF V KLR +K KVGHAGTLDP+ATGLLI+C GK TK
Sbjct: 9 GQVLLIDKPLTWSSFQVVNKLRWEIRQHFNIKKIKVGHAGTLDPLATGLLIICTGKQTKQ 68
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ YQG +K Y+G F LG T ++D ++ + P HI ++ I F GEI Q PP
Sbjct: 69 IESYQGQVKEYTGTFTLGATTPSYDLETEIDNTFPTAHITEKLIWDTTQQFLGEIQQKPP 128
Query: 423 MFSAIK 428
+FSAIK
Sbjct: 129 IFSAIK 134
>gi|340756957|ref|ZP_08693561.1| pseudouridylate synthase [Fusobacterium varium ATCC 27725]
gi|251834223|gb|EES62786.1| pseudouridylate synthase [Fusobacterium varium ATCC 27725]
Length = 286
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 79/119 (66%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ VNKP G TSF V KLRR++ +K+GH GTLDP+A G+L+VC+GKATKLV +G
Sbjct: 4 IINVNKPSGITSFDVVRKLRRILHERKIGHTGTLDPLAEGVLVVCIGKATKLVQDIEGYE 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ F LG T T+D + +I++ ++ ++ F GEI Q+PPM+SA+KV
Sbjct: 64 KTYTAGFELGYRTDTYDTEGQIIEKREINNVTLGELENVLKKFIGEIEQIPPMYSALKV 122
>gi|220912202|ref|YP_002487511.1| tRNA pseudouridine synthase B [Arthrobacter chlorophenolicus A6]
gi|219859080|gb|ACL39422.1| tRNA pseudouridine synthase B [Arthrobacter chlorophenolicus A6]
Length = 322
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/134 (44%), Positives = 82/134 (61%), Gaps = 4/134 (2%)
Query: 300 LPPT----WDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVC 355
+PPT G +V+V+KP+GWTS V G++RR+ +KVGHAGTLDPMATG+L+V
Sbjct: 1 MPPTSADILVGVLSGLVIVDKPQGWTSHDVVGRMRRIAGTRKVGHAGTLDPMATGVLVVG 60
Query: 356 VGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRG 415
+ KAT+L+ G K Y+ RLG++T T DA+ VI + ++ I A+ G
Sbjct: 61 INKATRLLTYIVGTSKTYTATIRLGQSTVTDDAEGDVIASAGTSAVAEQAIHDGVAALTG 120
Query: 416 EIWQVPPMFSAIKV 429
I QVP SAIKV
Sbjct: 121 GIEQVPSSVSAIKV 134
>gi|371777461|ref|ZP_09483783.1| tRNA pseudouridine synthase B [Anaerophaga sp. HS1]
Length = 253
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/152 (42%), Positives = 93/152 (61%), Gaps = 9/152 (5%)
Query: 293 IVSRSTELPPTWDGPFGTMVLVNKPKGWTSFTVCGK----LRRLVKVKK--VGHAGTLDP 346
I++ TEL + G ++L++KP GWTSF V K LR+L+ +KK VGHAGTLDP
Sbjct: 6 IIADITELSHPDEVKGGIVLLIDKPLGWTSFDVVNKIRSRLRKLMNIKKIKVGHAGTLDP 65
Query: 347 MATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDI 406
+ATGL+IVC+G+ATK +D + K Y + G T ++D ++ + Q P EHI E +
Sbjct: 66 LATGLVIVCIGRATKAIDFFMASEKEYVARVKFGATTPSFDLETEIDQVFPVEHINREKL 125
Query: 407 RKAAASFRGEIWQVPPMFSAIKV---RVFHFS 435
+K F G Q+PP FSA+K+ R +H +
Sbjct: 126 KKTLEDFCGIQQQIPPAFSAVKINGTRAYHLA 157
>gi|308176809|ref|YP_003916215.1| tRNA pseudouridylate synthase B [Arthrobacter arilaitensis Re117]
gi|307744272|emb|CBT75244.1| tRNA pseudouridylate synthase B [Arthrobacter arilaitensis Re117]
Length = 307
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/119 (48%), Positives = 77/119 (64%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VLV+K +G TS V G++RRL +KVGHAGTLDPMATG+L++ V KAT+L+ G
Sbjct: 15 LVLVDKDQGMTSHDVVGRIRRLAGTRKVGHAGTLDPMATGVLVIGVNKATRLLTYIVGHD 74
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ RLG+ T T DA+ +I + DEDI + A RG+I Q+P SAIKV
Sbjct: 75 KTYTATIRLGQNTVTDDAEGEIISERIAAAVSDEDIEREVAKLRGDIEQIPSSVSAIKV 133
>gi|110637358|ref|YP_677565.1| pseudouridylate synthase [Cytophaga hutchinsonii ATCC 33406]
gi|110280039|gb|ABG58225.1| tRNA pseudouridine synthase B [Cytophaga hutchinsonii ATCC 33406]
Length = 225
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/129 (47%), Positives = 82/129 (63%), Gaps = 1/129 (0%)
Query: 302 PTWDGPFGTMVL-VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKAT 360
PT + P +VL ++KP WTSF V K+RR++K+KKVGHAGTLDP+ATGLLIVC GK T
Sbjct: 2 PTNESPQHDLVLCLDKPYHWTSFDVVKKVRRVLKMKKVGHAGTLDPLATGLLIVCTGKKT 61
Query: 361 KLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQV 420
K ++ K YSG LG T+++D + P+ + + IRK F G I Q+
Sbjct: 62 KTIESLMADEKEYSGAIGLGATTASYDLELPLENHTDISGLTETQIRKTVKQFLGTITQI 121
Query: 421 PPMFSAIKV 429
PP+ SA+KV
Sbjct: 122 PPIHSAVKV 130
>gi|313887412|ref|ZP_07821102.1| tRNA pseudouridine synthase B [Porphyromonas asaccharolytica
PR426713P-I]
gi|332300818|ref|YP_004442739.1| tRNA pseudouridine synthase B [Porphyromonas asaccharolytica DSM
20707]
gi|312923180|gb|EFR33999.1| tRNA pseudouridine synthase B [Porphyromonas asaccharolytica
PR426713P-I]
gi|332177881|gb|AEE13571.1| tRNA pseudouridine synthase B [Porphyromonas asaccharolytica DSM
20707]
Length = 254
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 59/127 (46%), Positives = 82/127 (64%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLV------KVKKVGHAGTLDPMATGLLIVCVGKATKL 362
G ++ ++KP GWTSF V K+R +V K KVGHAGTLDP ATG+L++C G+ATKL
Sbjct: 26 GAIIPLDKPLGWTSFDVVNKVRIMVRQVTGIKRIKVGHAGTLDPQATGVLVLCTGRATKL 85
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+++ K Y +LG T ++D++ + P+EHI +E +R A + F GEI Q PP
Sbjct: 86 IEQLMDHDKEYCATLQLGATTPSFDSEHEIDATYPYEHITEEMVRSALSQFTGEIDQRPP 145
Query: 423 MFSAIKV 429
FSAIKV
Sbjct: 146 SFSAIKV 152
>gi|424843124|ref|ZP_18267749.1| tRNA pseudouridine 55 synthase [Saprospira grandis DSM 2844]
gi|395321322|gb|EJF54243.1| tRNA pseudouridine 55 synthase [Saprospira grandis DSM 2844]
Length = 247
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 62/133 (46%), Positives = 85/133 (63%), Gaps = 6/133 (4%)
Query: 304 WDGPFGTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVG 357
+D G ++LV+KP WTSF V K+R R + VKK VGHAGTLDP+ATGLL++C G
Sbjct: 17 YDFQAGALLLVDKPLEWTSFDVVNKIRYALCRSLGVKKIKVGHAGTLDPLATGLLLICTG 76
Query: 358 KATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEI 417
K TK +D QGM K Y+G +LG T ++DA+S +++ I + +A F G I
Sbjct: 77 KYTKKIDGLQGMPKSYTGQLKLGATTPSYDAESEETEQQSIAGIDAAALEQARQQFLGPI 136
Query: 418 WQVPPMFSAIKVR 430
Q PPMFSA+K++
Sbjct: 137 AQYPPMFSAVKIK 149
>gi|118472061|ref|YP_886986.1| tRNA pseudouridine synthase B [Mycobacterium smegmatis str. MC2
155]
gi|399987000|ref|YP_006567349.1| tRNA pseudouridine synthase B [Mycobacterium smegmatis str. MC2
155]
gi|118173348|gb|ABK74244.1| tRNA pseudouridine synthase B [Mycobacterium smegmatis str. MC2
155]
gi|399231561|gb|AFP39054.1| tRNA pseudouridine synthase B [Mycobacterium smegmatis str. MC2
155]
Length = 303
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 57/119 (47%), Positives = 76/119 (63%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V G+ RRL +KVGHAGTLDPMATG+L++ + +ATK++
Sbjct: 13 LVIVDKPAGMTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLVIGIERATKILGLLTATD 72
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ RLG T+T DA+ V++ P + DE I A A RG+I QVP SAIKV
Sbjct: 73 KSYAATIRLGRTTTTEDAEGEVVEDVPARRVTDEQIHAAVADLRGDIEQVPSAVSAIKV 131
>gi|378550863|ref|ZP_09826079.1| hypothetical protein CCH26_12279 [Citricoccus sp. CH26A]
Length = 309
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 65/134 (48%), Positives = 81/134 (60%), Gaps = 1/134 (0%)
Query: 297 STELPPTWDGPFGT-MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVC 355
S ELP G + +VLV+KP GWTS V GK+RRL +KVGHAGTLDPMATGLL+V
Sbjct: 2 SRELPQGAPGTSASGLVLVDKPAGWTSHDVVGKVRRLAGTRKVGHAGTLDPMATGLLVVG 61
Query: 356 VGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRG 415
KAT+L+ G K Y RLG++T T DA+ V+Q + ++ +R A G
Sbjct: 62 FNKATRLLTAITGSDKTYLATVRLGQSTVTDDAEGEVVQTRLANAVTEDRVRAAMLPLTG 121
Query: 416 EIWQVPPMFSAIKV 429
I QVP SAIKV
Sbjct: 122 AIQQVPSTVSAIKV 135
>gi|260061585|ref|YP_003194665.1| tRNA pseudouridine synthase [Robiginitalea biformata HTCC2501]
gi|88785717|gb|EAR16886.1| putative tRNA pseudouridine synthase [Robiginitalea biformata
HTCC2501]
Length = 236
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 82/126 (65%), Gaps = 6/126 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGK----LRRLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++L++KP W+SF LRR +KK VGHAGTLDP+ATGLL++C GKATK
Sbjct: 11 GQVLLIDKPYEWSSFQALNAVKWTLRRAFSLKKIKVGHAGTLDPLATGLLLICTGKATKQ 70
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+ QG+ K Y+G RLG T+++D ++P P EHI E + +A +F GEI Q PP
Sbjct: 71 IAGLQGLPKEYTGTIRLGAVTASYDLETPPEGTYPTEHITPEALLEATRAFTGEIRQQPP 130
Query: 423 MFSAIK 428
+FSAIK
Sbjct: 131 VFSAIK 136
>gi|379728887|ref|YP_005321083.1| tRNA pseudouridine synthase B [Saprospira grandis str. Lewin]
gi|378574498|gb|AFC23499.1| tRNA pseudouridine synthase B [Saprospira grandis str. Lewin]
Length = 241
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 62/133 (46%), Positives = 85/133 (63%), Gaps = 6/133 (4%)
Query: 304 WDGPFGTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVG 357
+D G ++LV+KP WTSF V K+R R + VKK VGHAGTLDP+ATGLL++C G
Sbjct: 10 YDFQAGALLLVDKPLEWTSFDVVNKIRYALCRSLGVKKIKVGHAGTLDPLATGLLLICTG 69
Query: 358 KATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEI 417
K TK +D QGM K Y+G +LG T ++DA+S +++ I + +A F G I
Sbjct: 70 KYTKKIDGLQGMPKTYTGQLKLGATTPSYDAESEETEQQSIAGIDAAALEQARQQFLGPI 129
Query: 418 WQVPPMFSAIKVR 430
Q PPMFSA+K++
Sbjct: 130 AQYPPMFSAVKIK 142
>gi|313148107|ref|ZP_07810300.1| tRNA pseudouridine synthase B [Bacteroides fragilis 3_1_12]
gi|313136874|gb|EFR54234.1| tRNA pseudouridine synthase B [Bacteroides fragilis 3_1_12]
Length = 235
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 62/127 (48%), Positives = 79/127 (62%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ NKP GWTSF V G R R +KVKK VGHAGTLDP+ATG++IVC GKATK
Sbjct: 8 GEVLYFNKPLGWTSFKVVGHARYHICRRIKVKKLKVGHAGTLDPLATGVMIVCTGKATKR 67
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y RLG T ++D + + P EHI E + + +F GEI Q+PP
Sbjct: 68 IEEFQYHTKEYVATIRLGATTPSYDLEHEIDATYPTEHITRELVEETLKTFVGEIQQIPP 127
Query: 423 MFSAIKV 429
FSA KV
Sbjct: 128 AFSACKV 134
>gi|296171640|ref|ZP_06852854.1| tRNA pseudouridine synthase B [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295894001|gb|EFG73764.1| tRNA pseudouridine synthase B [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length = 299
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 57/119 (47%), Positives = 76/119 (63%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V G+ RR+ ++VGHAGTLDPMATG+L++ V +ATK++ G
Sbjct: 10 IVVVDKPAGMTSHDVVGRCRRIFSTRRVGHAGTLDPMATGVLVIGVDRATKILGLLTGAS 69
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ RLG+ TST DA+ V+ H+ E I A A RG+I QVP SAIKV
Sbjct: 70 KSYAATIRLGQTTSTEDAEGEVLHSVSAAHLTREAIGAAVAGLRGDIEQVPSAVSAIKV 128
>gi|339624985|ref|ZP_08660774.1| pseudouridine synthase [Fructobacillus fructosus KCTC 3544]
Length = 304
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 58/121 (47%), Positives = 80/121 (66%), Gaps = 1/121 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++VNKPK TSF V +LRR+ +K+GHAGTLDP G+L+V +GKATKL+D Q
Sbjct: 11 LLVVNKPKNMTSFGVVARLRRISGQRKIGHAGTLDPNVDGVLVVALGKATKLIDLLQSRP 70
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPW-EHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+G G AT + DAD V+ +EP E I E + A S G+I Q+PP++SA+KV
Sbjct: 71 KTYTGTVTFGFATESQDADGAVVAKEPLTEAIDGEKLAAAFQSLEGDIIQIPPIYSAVKV 130
Query: 430 R 430
+
Sbjct: 131 K 131
>gi|418421222|ref|ZP_12994398.1| tRNA pseudouridine synthase B [Mycobacterium abscessus subsp.
bolletii BD]
gi|363997689|gb|EHM18900.1| tRNA pseudouridine synthase B [Mycobacterium abscessus subsp.
bolletii BD]
Length = 298
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 76/119 (63%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V + RR+ +KVGHAGTLDPMATG+L++ + +ATK++
Sbjct: 10 LVIVDKPAGMTSHDVVSRCRRIFSTRKVGHAGTLDPMATGVLVIGIERATKIMGLLTLTT 69
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ R G++TST DA+ V+Q H+ D DI A A RG+I QVP SAIKV
Sbjct: 70 KSYAATIRFGQSTSTDDAEGEVLQAVSASHLTDADIEAAVAGLRGDIAQVPSSVSAIKV 128
>gi|408491387|ref|YP_006867756.1| tRNA pseudouridine synthase TruB [Psychroflexus torquis ATCC
700755]
gi|408468662|gb|AFU69006.1| tRNA pseudouridine synthase TruB [Psychroflexus torquis ATCC
700755]
Length = 232
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 60/126 (47%), Positives = 80/126 (63%), Gaps = 6/126 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK------KVGHAGTLDPMATGLLIVCVGKATKL 362
G ++L +KP WTSF V K+R L+K K KVGHAGTLDP+ATGL+I+C GKATK
Sbjct: 12 GQILLFDKPLHWTSFQVVNKVRWLIKQKFDLKKLKVGHAGTLDPLATGLVILCTGKATKT 71
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ G K Y+G F +G T ++D ++ V + HI E I+ FRGEI Q PP
Sbjct: 72 IESLMGQTKIYTGEFTVGATTPSYDMETEVDKTFETSHITTELIQNTLPQFRGEIMQRPP 131
Query: 423 MFSAIK 428
+FSA+K
Sbjct: 132 IFSALK 137
>gi|294055323|ref|YP_003548981.1| tRNA pseudouridine synthase B [Coraliomargarita akajimensis DSM
45221]
gi|293614656|gb|ADE54811.1| tRNA pseudouridine synthase B [Coraliomargarita akajimensis DSM
45221]
Length = 238
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 83/125 (66%), Gaps = 1/125 (0%)
Query: 305 DGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVD 364
D P G ++LV+KP+G TS V ++RR+ ++KKVGHAGTLDPMATGL+I+ VGKATK+
Sbjct: 3 DAPEG-ILLVDKPQGITSHDVVDRVRRIFRMKKVGHAGTLDPMATGLMIILVGKATKVSQ 61
Query: 365 RYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMF 424
M K Y+ +LGE T + DAD V+ + + +E +R +F G+ +Q PPMF
Sbjct: 62 YMMSMDKEYTATMKLGEETDSQDADGEVLVTKEVPDLTEEQVRAEMKTFLGDQYQTPPMF 121
Query: 425 SAIKV 429
SA KV
Sbjct: 122 SAKKV 126
>gi|402817506|ref|ZP_10867094.1| tRNA pseudouridine synthase B [Paenibacillus alvei DSM 29]
gi|402505028|gb|EJW15555.1| tRNA pseudouridine synthase B [Paenibacillus alvei DSM 29]
Length = 306
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 76/114 (66%)
Query: 316 KPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSG 375
KP+ WTS V K+RRL++ K++GH GTLDP G+L +C+GKAT++V+ Q M K Y
Sbjct: 12 KPEDWTSHDVVAKVRRLIREKRIGHTGTLDPKVVGVLPLCIGKATRIVEYLQEMPKQYEA 71
Query: 376 VFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
V R G +T T D V++R H+ E IR+A SF G+I Q+PPM+SA+KV
Sbjct: 72 VLRFGLSTDTEDLSGEVLERSDASHLTAEMIREAVHSFIGDIEQIPPMYSAVKV 125
>gi|251797394|ref|YP_003012125.1| tRNA pseudouridine synthase B [Paenibacillus sp. JDR-2]
gi|247545020|gb|ACT02039.1| tRNA pseudouridine synthase B [Paenibacillus sp. JDR-2]
Length = 300
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 80/119 (67%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ V KP GWTS V K+RR+V++K++GHAGTLDPM TG+L +C+G++T++V+ Q
Sbjct: 4 IIAVWKPAGWTSHDVVAKVRRIVRMKRIGHAGTLDPMVTGVLPLCLGRSTRVVEYLQERP 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y V +LG AT T D V++ + + E + + SF GEI QVPPMFSA+KV
Sbjct: 64 KAYEAVIQLGTATDTEDLTGTVLEEQTGIIVTREQVLQVLQSFVGEIDQVPPMFSAVKV 122
>gi|154494348|ref|ZP_02033668.1| hypothetical protein PARMER_03703 [Parabacteroides merdae ATCC
43184]
gi|423346921|ref|ZP_17324608.1| tRNA pseudouridine synthase B [Parabacteroides merdae CL03T12C32]
gi|423725465|ref|ZP_17699602.1| tRNA pseudouridine synthase B [Parabacteroides merdae CL09T00C40]
gi|154085792|gb|EDN84837.1| tRNA pseudouridine synthase B [Parabacteroides merdae ATCC 43184]
gi|409218582|gb|EKN11550.1| tRNA pseudouridine synthase B [Parabacteroides merdae CL03T12C32]
gi|409234589|gb|EKN27417.1| tRNA pseudouridine synthase B [Parabacteroides merdae CL09T00C40]
Length = 236
Score = 118 bits (295), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 62/127 (48%), Positives = 80/127 (62%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ NKP WTSF + K R R +KVKK VGHAGTLDP+ATG++IVC GKATK
Sbjct: 6 GEVLYFNKPLKWTSFDLVNKFRYKLSRKLKVKKIKVGHAGTLDPLATGVMIVCTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+D +Q K Y +LGE T ++D + + P EHI E++ K SF G I Q+PP
Sbjct: 66 IDEFQYQTKEYVATLKLGETTPSFDLEKEIDGVYPTEHITREEVEKVLQSFVGTIQQIPP 125
Query: 423 MFSAIKV 429
+FSA KV
Sbjct: 126 VFSACKV 132
>gi|239917231|ref|YP_002956789.1| tRNA pseudouridine synthase B [Micrococcus luteus NCTC 2665]
gi|281414294|ref|ZP_06246036.1| tRNA pseudouridine synthase B [Micrococcus luteus NCTC 2665]
gi|239838438|gb|ACS30235.1| tRNA pseudouridine synthase B [Micrococcus luteus NCTC 2665]
Length = 298
Score = 118 bits (295), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 57/116 (49%), Positives = 76/116 (65%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
++KP+GWTS V G++RRL +KVGHAGTLDPMATGLL+V V KAT+L+ G K Y
Sbjct: 1 MDKPQGWTSHDVVGRIRRLAGTRKVGHAGTLDPMATGLLVVGVNKATRLLTAITGTDKTY 60
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
+ RLG++T T DA+ V+Q + E + + A+ GEI QVP SA+KV
Sbjct: 61 TATIRLGQSTVTDDAEGEVVQTRLANAVTPERVAEQVAALTGEILQVPSAVSAVKV 116
>gi|218262343|ref|ZP_03476848.1| hypothetical protein PRABACTJOHN_02522 [Parabacteroides johnsonii
DSM 18315]
gi|218223438|gb|EEC96088.1| hypothetical protein PRABACTJOHN_02522 [Parabacteroides johnsonii
DSM 18315]
Length = 237
Score = 118 bits (295), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 62/127 (48%), Positives = 80/127 (62%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G +V NKP WTSF + K R R +KVKK VGHAGTLDP+ATG++IVC GKATK
Sbjct: 6 GEVVYFNKPLKWTSFDLVNKFRYKLSRKLKVKKIKVGHAGTLDPLATGVMIVCTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+D +Q K Y +LGE T ++D + + P EHI +++ K SF G I Q+PP
Sbjct: 66 IDEFQYQTKEYVATLKLGETTPSFDLEKEIDGVYPTEHITRKEVEKVLQSFVGTIQQIPP 125
Query: 423 MFSAIKV 429
+FSA KV
Sbjct: 126 VFSACKV 132
>gi|117928719|ref|YP_873270.1| tRNA pseudouridine synthase B [Acidothermus cellulolyticus 11B]
gi|117649182|gb|ABK53284.1| tRNA pseudouridine synthase B [Acidothermus cellulolyticus 11B]
Length = 303
Score = 118 bits (295), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 62/128 (48%), Positives = 82/128 (64%), Gaps = 4/128 (3%)
Query: 302 PTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATK 361
P DG +++V+KP G TS V ++RRL ++VGHAGTLDPMATG+LIV VGKAT+
Sbjct: 2 PATDG----LLVVDKPAGITSHDVVARVRRLTGQRRVGHAGTLDPMATGVLIVGVGKATR 57
Query: 362 LVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVP 421
L+ G K Y+ + RLG TST DAD ++R E + + +R+A F GE Q P
Sbjct: 58 LLGYLSGCDKEYAAIIRLGMTTSTDDADGEPVRRAGVERLSETAVREALTRFVGEFDQRP 117
Query: 422 PMFSAIKV 429
P FSA+KV
Sbjct: 118 PAFSAVKV 125
>gi|325962813|ref|YP_004240719.1| tRNA pseudouridine synthase B [Arthrobacter phenanthrenivorans
Sphe3]
gi|323468900|gb|ADX72585.1| tRNA pseudouridine synthase B [Arthrobacter phenanthrenivorans
Sphe3]
Length = 317
Score = 118 bits (295), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 76/119 (63%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP+GWTS V G++RRL +KVGHAGTLDPMATG+L+V + KAT+L+ G
Sbjct: 5 LVIVDKPQGWTSHDVVGRMRRLAGTRKVGHAGTLDPMATGVLVVGINKATRLLTYIVGTS 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ RLG++T T DA+ V + ++ I A+ G I QVP SAIKV
Sbjct: 65 KTYTATIRLGQSTVTDDAEGEVTATAGTSGVSEQAIHDGVAALTGNIQQVPSSVSAIKV 123
>gi|423343058|ref|ZP_17320772.1| tRNA pseudouridine synthase B [Parabacteroides johnsonii
CL02T12C29]
gi|409216734|gb|EKN09717.1| tRNA pseudouridine synthase B [Parabacteroides johnsonii
CL02T12C29]
Length = 236
Score = 117 bits (294), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 62/127 (48%), Positives = 80/127 (62%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G +V NKP WTSF + K R R +KVKK VGHAGTLDP+ATG++IVC GKATK
Sbjct: 6 GEVVYFNKPLKWTSFDLVNKFRYKLSRKLKVKKIKVGHAGTLDPLATGVMIVCTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+D +Q K Y +LGE T ++D + + P EHI +++ K SF G I Q+PP
Sbjct: 66 IDEFQYQTKEYVATLKLGETTPSFDLEKEIDGVYPTEHITRKEVEKVLQSFVGTIQQIPP 125
Query: 423 MFSAIKV 429
+FSA KV
Sbjct: 126 VFSACKV 132
>gi|311744149|ref|ZP_07717954.1| tRNA pseudouridine synthase B [Aeromicrobium marinum DSM 15272]
gi|311312504|gb|EFQ82416.1| tRNA pseudouridine synthase B [Aeromicrobium marinum DSM 15272]
Length = 293
Score = 117 bits (294), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 60/123 (48%), Positives = 77/123 (62%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P G +V+V+KP GWTS V G++RRL +KVGHAGTLDPMATG+L++ + +AT+L+
Sbjct: 5 PRGGVVVVDKPSGWTSHDVVGRVRRLAGTRKVGHAGTLDPMATGVLVLGIERATRLLGHL 64
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
Q K Y RLG AT+T DA+ V H+ E + A RGEI QVP SA
Sbjct: 65 QLADKEYLATVRLGAATTTDDAEGEVTSTTDASHLTAEQVEAALVPLRGEIDQVPSSVSA 124
Query: 427 IKV 429
IKV
Sbjct: 125 IKV 127
>gi|433635851|ref|YP_007269478.1| tRNA pseudouridine synthase B [Mycobacterium canettii CIPT
140070017]
gi|432167444|emb|CCK64959.1| tRNA pseudouridine synthase B [Mycobacterium canettii CIPT
140070017]
Length = 298
Score = 117 bits (294), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 57/119 (47%), Positives = 76/119 (63%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V G+ RR+ ++VGHAGTLDPMATG+L++ + +ATK++
Sbjct: 8 IVVVDKPAGMTSHDVVGRCRRIFSTRRVGHAGTLDPMATGVLVIGIERATKILGLLTAAP 67
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ RLG+ TST DA+ V+Q P H+ E I A RGEI QVP SAIKV
Sbjct: 68 KSYAATIRLGQTTSTEDAEGQVMQSVPAGHLTVEAIDAAMVRLRGEIRQVPSAVSAIKV 126
>gi|255533428|ref|YP_003093800.1| tRNA pseudouridine synthase B [Pedobacter heparinus DSM 2366]
gi|255346412|gb|ACU05738.1| tRNA pseudouridine synthase B [Pedobacter heparinus DSM 2366]
Length = 228
Score = 117 bits (294), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 61/123 (49%), Positives = 79/123 (64%), Gaps = 2/123 (1%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVK--VKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
G ++L+NKP WTSF V GK+R +K KVGHAGTLDP+ATGLLI+C GK TK +D +
Sbjct: 9 GELLLINKPYKWTSFDVVGKIRNSLKPLKLKVGHAGTLDPLATGLLILCTGKLTKQIDTF 68
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
Q K Y+G LG T ++D ++ V Q P + I + I A A F G+I Q PP SA
Sbjct: 69 QAEEKEYTGTMVLGATTPSYDLETVVDQEFPLDGITEGAIYAATAPFIGDIQQYPPAHSA 128
Query: 427 IKV 429
+KV
Sbjct: 129 VKV 131
>gi|393782555|ref|ZP_10370738.1| tRNA pseudouridine synthase B [Bacteroides salyersiae CL02T12C01]
gi|392672782|gb|EIY66248.1| tRNA pseudouridine synthase B [Bacteroides salyersiae CL02T12C01]
Length = 237
Score = 117 bits (294), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 62/127 (48%), Positives = 79/127 (62%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ NKP GWTSF V G R R +KVKK VGHAGTLDP+ATG++IVC GKATK
Sbjct: 6 GEVLFFNKPLGWTSFKVVGHARYHICRRMKVKKLKVGHAGTLDPLATGVMIVCTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y +LG T ++D + + P EHI E + + F GEI QVPP
Sbjct: 66 IEEFQYHTKEYIATIQLGATTPSYDLEHEIDATYPTEHITREMVEETLKQFLGEIHQVPP 125
Query: 423 MFSAIKV 429
+FSA KV
Sbjct: 126 VFSACKV 132
>gi|53711348|ref|YP_097340.1| tRNA pseudouridine synthase B [Bacteroides fragilis YCH46]
gi|60679665|ref|YP_209809.1| tRNA pseudouridine synthase [Bacteroides fragilis NCTC 9343]
gi|265764792|ref|ZP_06093067.1| tRNA pseudouridine synthase B [Bacteroides sp. 2_1_16]
gi|336407598|ref|ZP_08588095.1| tRNA pseudouridine synthase B [Bacteroides sp. 2_1_56FAA]
gi|375356450|ref|YP_005109221.1| putative tRNA pseudouridine synthase [Bacteroides fragilis 638R]
gi|383116413|ref|ZP_09937163.1| tRNA pseudouridine synthase B [Bacteroides sp. 3_2_5]
gi|423248076|ref|ZP_17229092.1| tRNA pseudouridine synthase B [Bacteroides fragilis CL03T00C08]
gi|423253024|ref|ZP_17233955.1| tRNA pseudouridine synthase B [Bacteroides fragilis CL03T12C07]
gi|423259590|ref|ZP_17240513.1| tRNA pseudouridine synthase B [Bacteroides fragilis CL07T00C01]
gi|423263437|ref|ZP_17242440.1| tRNA pseudouridine synthase B [Bacteroides fragilis CL07T12C05]
gi|423270044|ref|ZP_17249016.1| tRNA pseudouridine synthase B [Bacteroides fragilis CL05T00C42]
gi|423272503|ref|ZP_17251450.1| tRNA pseudouridine synthase B [Bacteroides fragilis CL05T12C13]
gi|423282617|ref|ZP_17261502.1| tRNA pseudouridine synthase B [Bacteroides fragilis HMW 615]
gi|62901266|sp|Q650L8.1|TRUB_BACFR RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|81317261|sp|Q5LJ29.1|TRUB_BACFN RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|52214213|dbj|BAD46806.1| tRNA pseudouridine synthase B [Bacteroides fragilis YCH46]
gi|60491099|emb|CAH05847.1| putative tRNA pseudouridine synthase [Bacteroides fragilis NCTC
9343]
gi|251948322|gb|EES88604.1| tRNA pseudouridine synthase B [Bacteroides sp. 3_2_5]
gi|263254176|gb|EEZ25610.1| tRNA pseudouridine synthase B [Bacteroides sp. 2_1_16]
gi|301161130|emb|CBW20668.1| putative tRNA pseudouridine synthase [Bacteroides fragilis 638R]
gi|335947502|gb|EGN09293.1| tRNA pseudouridine synthase B [Bacteroides sp. 2_1_56FAA]
gi|387776049|gb|EIK38150.1| tRNA pseudouridine synthase B [Bacteroides fragilis CL07T00C01]
gi|392657551|gb|EIY51184.1| tRNA pseudouridine synthase B [Bacteroides fragilis CL03T12C07]
gi|392660793|gb|EIY54394.1| tRNA pseudouridine synthase B [Bacteroides fragilis CL03T00C08]
gi|392699711|gb|EIY92882.1| tRNA pseudouridine synthase B [Bacteroides fragilis CL05T00C42]
gi|392707487|gb|EIZ00605.1| tRNA pseudouridine synthase B [Bacteroides fragilis CL07T12C05]
gi|392708769|gb|EIZ01873.1| tRNA pseudouridine synthase B [Bacteroides fragilis CL05T12C13]
gi|404582185|gb|EKA86880.1| tRNA pseudouridine synthase B [Bacteroides fragilis HMW 615]
Length = 233
Score = 117 bits (294), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 62/127 (48%), Positives = 79/127 (62%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ NKP GWTSF V G R R +KVKK VGHAGTLDP+ATG++IVC GKATK
Sbjct: 6 GEVLYFNKPLGWTSFKVVGHARYHMCRRMKVKKLKVGHAGTLDPLATGVMIVCTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y +LG T ++D + + P EHI E + K +F GEI Q+PP
Sbjct: 66 IEEFQYHTKEYVATIQLGATTPSYDLEHEIDATYPTEHITRELVEKTLKTFVGEIQQIPP 125
Query: 423 MFSAIKV 429
FSA KV
Sbjct: 126 AFSACKV 132
>gi|163787171|ref|ZP_02181618.1| putative tRNA pseudouridine synthase [Flavobacteriales bacterium
ALC-1]
gi|159877059|gb|EDP71116.1| putative tRNA pseudouridine synthase [Flavobacteriales bacterium
ALC-1]
Length = 235
Score = 117 bits (294), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 80/126 (63%), Gaps = 6/126 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK------KVGHAGTLDPMATGLLIVCVGKATKL 362
G ++L++KP WTSF KLR ++ KVGHAGTLDP+ATGLL++C GK TK
Sbjct: 13 GEVLLIDKPLTWTSFQAVNKLRWAIRQAFSIKKIKVGHAGTLDPLATGLLVICTGKMTKQ 72
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +QG K Y+G F LG T ++D ++ + Q P +HI + I + F G+I Q PP
Sbjct: 73 INTFQGQEKEYTGTFVLGSTTPSFDLETEIDQTFPTDHISETLIHETTKQFIGKIEQFPP 132
Query: 423 MFSAIK 428
+FSAIK
Sbjct: 133 VFSAIK 138
>gi|443243248|ref|YP_007376473.1| pseudouridine synthase [Nonlabens dokdonensis DSW-6]
gi|442800647|gb|AGC76452.1| pseudouridine synthase [Nonlabens dokdonensis DSW-6]
Length = 238
Score = 117 bits (294), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 60/126 (47%), Positives = 82/126 (65%), Gaps = 6/126 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLV----KVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++L++KP W+SF V KLR L+ K+KK VGHAGTLDP+A+GLLI+C GK TK
Sbjct: 13 GQVLLIDKPLEWSSFQVVNKLRWLIRKEYKIKKIKVGHAGTLDPLASGLLIICTGKETKN 72
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+ YQ K Y+G LG T ++D ++ V + P + + ++ IRK F GEI Q PP
Sbjct: 73 ITTYQAQEKEYTGTITLGATTPSYDLETEVDRTFPLDDLTEDLIRKTTTQFTGEIQQKPP 132
Query: 423 MFSAIK 428
+FSAIK
Sbjct: 133 IFSAIK 138
>gi|404446047|ref|ZP_11011171.1| tRNA pseudouridine synthase B [Mycobacterium vaccae ATCC 25954]
gi|403651075|gb|EJZ06241.1| tRNA pseudouridine synthase B [Mycobacterium vaccae ATCC 25954]
Length = 302
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/119 (48%), Positives = 76/119 (63%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS + G+ R L +KVGHAGTLDPMATG+LIV + +ATK++
Sbjct: 15 LVVVDKPGGMTSHDIVGRCRTLFGTRKVGHAGTLDPMATGVLIVGIERATKILGLLTATD 74
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ RLG+ TST DA+ ++Q P + DE I A A RG+I QVP SAIKV
Sbjct: 75 KSYTATIRLGQTTSTEDAEGELLQSVPAASVTDEQIEAAIAPLRGQISQVPSAVSAIKV 133
>gi|326692681|ref|ZP_08229686.1| tRNA pseudouridine synthase B [Leuconostoc argentinum KCTC 3773]
Length = 302
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/135 (48%), Positives = 82/135 (60%), Gaps = 4/135 (2%)
Query: 305 DGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVD 364
+ P +++VNKPKG TSF V K+RR V KKVGHAGTLDP G+L+V +GKATKL+D
Sbjct: 4 NNPVDGILVVNKPKGVTSFDVVAKVRRAVGQKKVGHAGTLDPNVDGVLVVALGKATKLID 63
Query: 365 RYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPM 423
Q K Y G LG AT T D D V+ +P D I +A G I QVPPM
Sbjct: 64 ELQARPKRYIGEITLGFATETEDLDGAVVAEQPITTPYTDTAIDQAIQQLNGPIQQVPPM 123
Query: 424 FSAIKV---RVFHFS 435
FSA+KV R++ ++
Sbjct: 124 FSAVKVAGKRLYEYA 138
>gi|444307781|ref|ZP_21143498.1| tRNA pseudouridine synthase B [Arthrobacter sp. SJCon]
gi|443479900|gb|ELT42878.1| tRNA pseudouridine synthase B [Arthrobacter sp. SJCon]
Length = 305
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 56/116 (48%), Positives = 75/116 (64%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
++KP+GWTS V G++RRL +KVGHAGTLDPMATG+L+V + KAT+L+ G K Y
Sbjct: 1 MDKPQGWTSHDVVGRMRRLAGTRKVGHAGTLDPMATGVLVVGINKATRLLTYIVGTSKTY 60
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
+ RLG++T T DA+ V E + D+ I A+ G+I QVP SAIKV
Sbjct: 61 TATIRLGQSTVTDDAEGEVTATAGTEGVSDQAIHDGVAALTGDILQVPSSVSAIKV 116
>gi|228470915|ref|ZP_04055760.1| tRNA pseudouridine synthase B [Porphyromonas uenonis 60-3]
gi|228307312|gb|EEK16326.1| tRNA pseudouridine synthase B [Porphyromonas uenonis 60-3]
Length = 254
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 80/127 (62%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLV------KVKKVGHAGTLDPMATGLLIVCVGKATKL 362
G ++ ++KP GWTSF V KLR +V K KVGHAGTLDP ATG+L++C G+ATKL
Sbjct: 26 GAIIPLDKPLGWTSFDVVNKLRIMVRQVTGIKRIKVGHAGTLDPQATGVLVLCTGRATKL 85
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+++ K Y +LG T ++D++ + P+EHI +E +R F GEI Q PP
Sbjct: 86 IEQLMDHDKEYCATLQLGATTPSFDSEHEIDATYPYEHITEEMVRSTLHQFTGEIDQRPP 145
Query: 423 MFSAIKV 429
FSA+KV
Sbjct: 146 SFSAVKV 152
>gi|409195823|ref|ZP_11224486.1| tRNA pseudouridine synthase B [Marinilabilia salmonicolor JCM
21150]
Length = 261
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/136 (47%), Positives = 84/136 (61%), Gaps = 9/136 (6%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR-RL-----VKVKKVGHAGTLDPMATGLLIVCVGKATKL 362
G ++LV+KP WTSF V K+R RL +K KVGHAGTLDP+A+GL+IVC GKATK
Sbjct: 22 GLILLVDKPLEWTSFDVVKKIRSRLQHGLKLKKLKVGHAGTLDPLASGLVIVCTGKATKQ 81
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+DR G K Y + G T ++D ++PV Q P HI + + A F GE QVPP
Sbjct: 82 IDRLMGHDKTYVAGIKFGATTPSFDLETPVDQEFPAGHITSDSVAAALLHFLGEQDQVPP 141
Query: 423 MFSAIKV---RVFHFS 435
FSA+KV R +H +
Sbjct: 142 QFSAVKVDGKRAYHMA 157
>gi|403526544|ref|YP_006661431.1| tRNA pseudouridine synthase B [Arthrobacter sp. Rue61a]
gi|403228971|gb|AFR28393.1| putative tRNA pseudouridine synthase B [Arthrobacter sp. Rue61a]
Length = 323
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/119 (47%), Positives = 76/119 (63%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP+GWTS V G++RRL +KVGHAGTLDPMATG+L++ + KAT+L+ G
Sbjct: 17 LVIVDKPQGWTSHDVVGRMRRLAGTRKVGHAGTLDPMATGVLVLGINKATRLLTYIVGTS 76
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ RLGE T T DA+ V + I D+ + A+ G I QVP SAIKV
Sbjct: 77 KTYTATIRLGETTITDDAEGAVTEARTAADITDDAVAVGVAALTGPIQQVPSSVSAIKV 135
>gi|390954163|ref|YP_006417921.1| tRNA pseudouridine synthase B [Aequorivita sublithincola DSM 14238]
gi|390420149|gb|AFL80906.1| tRNA pseudouridine synthase B [Aequorivita sublithincola DSM 14238]
Length = 234
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/126 (47%), Positives = 78/126 (61%), Gaps = 6/126 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLV------KVKKVGHAGTLDPMATGLLIVCVGKATKL 362
G ++L++KP WTSF KLR L+ K KVGHAGTLDP+ATGLLI+C GK TK
Sbjct: 14 GQVLLIDKPLEWTSFQAVNKLRWLIRKSFDIKKIKVGHAGTLDPLATGLLIICTGKFTKR 73
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+D +Q K Y+G F LG T ++D ++ + Q I E I +A F GEI Q PP
Sbjct: 74 IDTFQAQEKEYTGSFTLGATTPSYDLETQIDQTFDVSEITSEKIHEATKQFLGEIQQQPP 133
Query: 423 MFSAIK 428
+FSA+K
Sbjct: 134 VFSALK 139
>gi|333991189|ref|YP_004523803.1| tRNA pseudouridine synthase B TruB [Mycobacterium sp. JDM601]
gi|333487157|gb|AEF36549.1| tRNA pseudouridine synthase B TruB [Mycobacterium sp. JDM601]
Length = 292
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/119 (47%), Positives = 76/119 (63%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V + RR +KVGHAGTLDPMATG+L+V + +ATK++
Sbjct: 5 LVVVDKPAGITSHDVVARCRRFFGTRKVGHAGTLDPMATGVLVVGIERATKILGLLTTSS 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ RLG+ TST DA+ V+Q +H+ D I +A A RG+I QVP SAIKV
Sbjct: 65 KSYAATIRLGQTTSTEDAEGEVLQTVSADHLTDSQIAEAIAGLRGDIAQVPSAVSAIKV 123
>gi|433647229|ref|YP_007292231.1| tRNA pseudouridine synthase B [Mycobacterium smegmatis JS623]
gi|433297006|gb|AGB22826.1| tRNA pseudouridine synthase B [Mycobacterium smegmatis JS623]
Length = 293
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/119 (47%), Positives = 76/119 (63%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V G+ RR+ +KVGHAGTLDPMATG+L+V + +ATK++
Sbjct: 6 IVVVDKPAGMTSHDVVGRCRRIFGTRKVGHAGTLDPMATGVLVVGIERATKILGLLTTTD 65
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K YS RLG+ TST DA+ V+Q + D+ I A + RGEI QVP SA+KV
Sbjct: 66 KSYSATIRLGQTTSTDDAEGEVLQSVSASAVTDDQIGDAVGALRGEIAQVPSAVSAVKV 124
>gi|167968623|ref|ZP_02550900.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis H37Ra]
Length = 298
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 77/119 (64%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+++KP G TS V G+ RR+ ++VGHAGTLDPMATG+L++ + +ATK++
Sbjct: 8 IVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTAAP 67
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ RLG+ TST DA+ V+Q P +H+ E I A RGEI QVP SAIKV
Sbjct: 68 KSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAIKV 126
>gi|296393958|ref|YP_003658842.1| tRNA pseudouridine synthase B [Segniliparus rotundus DSM 44985]
gi|296181105|gb|ADG98011.1| tRNA pseudouridine synthase B [Segniliparus rotundus DSM 44985]
Length = 304
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/123 (48%), Positives = 80/123 (65%), Gaps = 1/123 (0%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P G +V+V+KP+G TS + K RR + +KVGHAGTLDPMATG+L++ +GKAT+L+ R
Sbjct: 9 PHG-LVIVDKPQGMTSHDMVAKARRFFRTRKVGHAGTLDPMATGVLVLGLGKATRLLGRL 67
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
K Y G RLGE T++ DAD V++R + + I A+ GEI QVPP SA
Sbjct: 68 TADEKRYHGTIRLGEQTASDDADGEVVRRASAAGVALDAIMAGIAALTGEISQVPPAVSA 127
Query: 427 IKV 429
IKV
Sbjct: 128 IKV 130
>gi|289444341|ref|ZP_06434085.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis T46]
gi|289417260|gb|EFD14500.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis T46]
Length = 178
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 77/119 (64%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+++KP G TS V G+ RR+ ++VGHAGTLDPMATG+L++ + +ATK++
Sbjct: 8 IVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTAAP 67
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ RLG+ TST DA+ V+Q P +H+ E I A RGEI QVP SAIKV
Sbjct: 68 KSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAIKV 126
>gi|108799062|ref|YP_639259.1| tRNA pseudouridine synthase B [Mycobacterium sp. MCS]
gi|119868177|ref|YP_938129.1| tRNA pseudouridine synthase B [Mycobacterium sp. KMS]
gi|126434665|ref|YP_001070356.1| tRNA pseudouridine synthase B [Mycobacterium sp. JLS]
gi|123070301|sp|Q1BA81.1|TRUB_MYCSS RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|254764887|sp|A3PY88.1|TRUB_MYCSJ RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|254764888|sp|A1UET1.1|TRUB_MYCSK RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|108769481|gb|ABG08203.1| tRNA pseudouridine synthase B [Mycobacterium sp. MCS]
gi|119694266|gb|ABL91339.1| tRNA pseudouridine synthase B [Mycobacterium sp. KMS]
gi|126234465|gb|ABN97865.1| tRNA pseudouridine synthase B [Mycobacterium sp. JLS]
Length = 297
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/115 (50%), Positives = 73/115 (63%)
Query: 315 NKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYS 374
+KP G TS V G+ RR+ +KVGHAGTLDPMATG+L+V + +ATKL+ K Y
Sbjct: 14 DKPAGMTSHDVVGRCRRIFGTRKVGHAGTLDPMATGVLVVGIDRATKLLGLLTATDKSYE 73
Query: 375 GVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
RLG+ T+T DA+ V++ P I DE I A A+ RGEI QVP SAIKV
Sbjct: 74 ATIRLGQTTTTEDAEGDVVETTPATGITDEQIGHAVAALRGEIDQVPSAVSAIKV 128
>gi|15609930|ref|NP_217309.1| Probable tRNA pseudouridine synthase B TruB (tRNA pseudouridine 55
synthase) (PSI55 synthase) (pseudouridylate synthase)
(uracil hydrolyase) [Mycobacterium tuberculosis H37Rv]
gi|15842331|ref|NP_337368.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis CDC1551]
gi|31793969|ref|NP_856462.1| tRNA pseudouridine synthase B [Mycobacterium bovis AF2122/97]
gi|121638673|ref|YP_978897.1| tRNA pseudouridine synthase B [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|148662635|ref|YP_001284158.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis H37Ra]
gi|148823981|ref|YP_001288735.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis F11]
gi|224991165|ref|YP_002645854.1| tRNA pseudouridine synthase B [Mycobacterium bovis BCG str. Tokyo
172]
gi|253798123|ref|YP_003031124.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis KZN 1435]
gi|254232889|ref|ZP_04926216.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis C]
gi|254365444|ref|ZP_04981489.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis str.
Haarlem]
gi|254551851|ref|ZP_05142298.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis '98-R604
INH-RIF-EM']
gi|289448451|ref|ZP_06438195.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
CPHL_A]
gi|289570972|ref|ZP_06451199.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis T17]
gi|289575491|ref|ZP_06455718.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis K85]
gi|289746596|ref|ZP_06505974.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis 02_1987]
gi|289754899|ref|ZP_06514277.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis EAS054]
gi|289762967|ref|ZP_06522345.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis GM
1503]
gi|294994114|ref|ZP_06799805.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis 210]
gi|297635404|ref|ZP_06953184.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis KZN 4207]
gi|297732402|ref|ZP_06961520.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis KZN R506]
gi|298526259|ref|ZP_07013668.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis
94_M4241A]
gi|306777074|ref|ZP_07415411.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
SUMu001]
gi|306780976|ref|ZP_07419313.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
SUMu002]
gi|306785604|ref|ZP_07423926.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
SUMu003]
gi|306790199|ref|ZP_07428521.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
SUMu004]
gi|306794283|ref|ZP_07432585.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
SUMu005]
gi|306798701|ref|ZP_07437003.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
SUMu006]
gi|306804556|ref|ZP_07441224.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
SUMu008]
gi|306807404|ref|ZP_07444072.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
SUMu007]
gi|306968855|ref|ZP_07481516.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
SUMu009]
gi|306973189|ref|ZP_07485850.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
SUMu010]
gi|307080898|ref|ZP_07490068.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
SUMu011]
gi|307085489|ref|ZP_07494602.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
SUMu012]
gi|313659734|ref|ZP_07816614.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis KZN
V2475]
gi|339632804|ref|YP_004724446.1| tRNA pseudouridine synthase B TRUB [Mycobacterium africanum
GM041182]
gi|375295391|ref|YP_005099658.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis KZN 4207]
gi|378772528|ref|YP_005172261.1| tRNA pseudouridine synthase B [Mycobacterium bovis BCG str. Mexico]
gi|385992066|ref|YP_005910364.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis CCDC5180]
gi|385995688|ref|YP_005913986.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis CCDC5079]
gi|392387425|ref|YP_005309054.1| truB [Mycobacterium tuberculosis UT205]
gi|392431599|ref|YP_006472643.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis KZN 605]
gi|397674704|ref|YP_006516239.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis H37Rv]
gi|422813839|ref|ZP_16862211.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
CDC1551A]
gi|424805132|ref|ZP_18230563.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
W-148]
gi|424948444|ref|ZP_18364140.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis NCGM2209]
gi|449064865|ref|YP_007431948.1| tRNA pseudouridine synthase B [Mycobacterium bovis BCG str. Korea
1168P]
gi|49065852|sp|P62189.1|TRUB_MYCBO RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|49065853|sp|P62190.1|TRUB_MYCTU RecName: Full=tRNA pseudouridine synthase B; AltName:
Full=MTB-TRUB; AltName: Full=tRNA pseudouridine(55)
synthase; Short=Psi55 synthase; AltName: Full=tRNA
pseudouridylate synthase; AltName: Full=tRNA-uridine
isomerase
gi|189036543|sp|A1KMD6.1|TRUB_MYCBP RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|189036544|sp|A5U6E6.1|TRUB_MYCTA RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|13882627|gb|AAK47182.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis CDC1551]
gi|31619563|emb|CAD95001.1| PROBABLE TRNA PSEUDOURIDINE SYNTHASE B TRUB (TRNA PSEUDOURIDINE 55
SYNTHASE) (PSI55 SYNTHASE) (PSEUDOURIDYLATE SYNTHASE)
(URACIL HYDROLYASE) [Mycobacterium bovis AF2122/97]
gi|121494321|emb|CAL72799.1| Probable trna pseudouridine synthase B truB [Mycobacterium bovis
BCG str. Pasteur 1173P2]
gi|124601948|gb|EAY60958.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis C]
gi|134150957|gb|EBA43002.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis str.
Haarlem]
gi|148506787|gb|ABQ74596.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis H37Ra]
gi|148722508|gb|ABR07133.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis F11]
gi|224774280|dbj|BAH27086.1| tRNA pseudouridine synthase B [Mycobacterium bovis BCG str. Tokyo
172]
gi|253319626|gb|ACT24229.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis KZN
1435]
gi|289421409|gb|EFD18610.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
CPHL_A]
gi|289539922|gb|EFD44500.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis K85]
gi|289544726|gb|EFD48374.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis T17]
gi|289687124|gb|EFD54612.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis 02_1987]
gi|289695486|gb|EFD62915.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis EAS054]
gi|289710473|gb|EFD74489.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis GM
1503]
gi|298496053|gb|EFI31347.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis
94_M4241A]
gi|308214583|gb|EFO73982.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
SUMu001]
gi|308326229|gb|EFP15080.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
SUMu002]
gi|308329787|gb|EFP18638.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
SUMu003]
gi|308333392|gb|EFP22243.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
SUMu004]
gi|308337416|gb|EFP26267.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
SUMu005]
gi|308341081|gb|EFP29932.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
SUMu006]
gi|308346135|gb|EFP34986.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
SUMu007]
gi|308348886|gb|EFP37737.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
SUMu008]
gi|308353606|gb|EFP42457.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
SUMu009]
gi|308357452|gb|EFP46303.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
SUMu010]
gi|308361401|gb|EFP50252.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
SUMu011]
gi|308365013|gb|EFP53864.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
SUMu012]
gi|323718639|gb|EGB27803.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
CDC1551A]
gi|326904408|gb|EGE51341.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis
W-148]
gi|328457896|gb|AEB03319.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis KZN
4207]
gi|339295642|gb|AEJ47753.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis CCDC5079]
gi|339299259|gb|AEJ51369.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis CCDC5180]
gi|339332160|emb|CCC27868.1| putative tRNA pseudouridine synthase B TRUB [Mycobacterium
africanum GM041182]
gi|341602711|emb|CCC65387.1| probable trna pseudouridine synthase B truB [Mycobacterium bovis
BCG str. Moreau RDJ]
gi|356594849|gb|AET20078.1| tRNA pseudouridine synthase B [Mycobacterium bovis BCG str. Mexico]
gi|358232959|dbj|GAA46451.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis NCGM2209]
gi|378545976|emb|CCE38254.1| truB [Mycobacterium tuberculosis UT205]
gi|379029106|dbj|BAL66839.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis str.
Erdman = ATCC 35801]
gi|392053008|gb|AFM48566.1| tRNA pseudouridine synthase B truB [Mycobacterium tuberculosis KZN
605]
gi|395139609|gb|AFN50768.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis H37Rv]
gi|440582271|emb|CCG12674.1| putative TRNA PSEUDOURIDINE SYNTHASE B TRUB (TRNA PSEUDOURIDINE 55
SYNTHASE) (PSI55 SYNTHASE) (PSEUDOURIDYLATE SYNTHASE)
(URACIL HYDROLYASE) [Mycobacterium tuberculosis 7199-99]
gi|444896331|emb|CCP45592.1| Probable tRNA pseudouridine synthase B TruB (tRNA pseudouridine 55
synthase) (PSI55 synthase) (pseudouridylate synthase)
(uracil hydrolyase) [Mycobacterium tuberculosis H37Rv]
gi|449033373|gb|AGE68800.1| tRNA pseudouridine synthase B [Mycobacterium bovis BCG str. Korea
1168P]
Length = 298
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 77/119 (64%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+++KP G TS V G+ RR+ ++VGHAGTLDPMATG+L++ + +ATK++
Sbjct: 8 IVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTAAP 67
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ RLG+ TST DA+ V+Q P +H+ E I A RGEI QVP SAIKV
Sbjct: 68 KSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAIKV 126
>gi|408675367|ref|YP_006875115.1| tRNA pseudouridine synthase B [Emticicia oligotrophica DSM 17448]
gi|387856991|gb|AFK05088.1| tRNA pseudouridine synthase B [Emticicia oligotrophica DSM 17448]
Length = 232
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 74/119 (62%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP WTSF V K+R K KKVGHAGTLDP+ATGLLI+C GK TK +D +Q
Sbjct: 8 VILIDKPLKWTSFDVVNKVRWAGKYKKVGHAGTLDPLATGLLILCTGKMTKQIDTFQAQE 67
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+G LG+ T + D ++ P EHI + I + G I Q+PP SAIK+
Sbjct: 68 KEYTGTLVLGKTTPSIDLETEFDAEYPIEHINSKTINEVVKQLSGNIEQIPPAHSAIKI 126
>gi|383308548|ref|YP_005361359.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis RGTB327]
gi|380722501|gb|AFE17610.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis RGTB327]
Length = 301
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 77/119 (64%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+++KP G TS V G+ RR+ ++VGHAGTLDPMATG+L++ + +ATK++
Sbjct: 8 IVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTAAP 67
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ RLG+ TST DA+ V+Q P +H+ E I A RGEI QVP SAIKV
Sbjct: 68 KSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAIKV 126
>gi|46015795|pdb|1SGV|A Chain A, Structure Of Trna Psi55 Pseudouridine Synthase (Trub)
gi|46015796|pdb|1SGV|B Chain B, Structure Of Trna Psi55 Pseudouridine Synthase (Trub)
Length = 316
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 77/119 (64%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+++KP G TS V G+ RR+ ++VGHAGTLDPMATG+L++ + +ATK++
Sbjct: 8 IVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTAAP 67
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ RLG+ TST DA+ V+Q P +H+ E I A RGEI QVP SAIKV
Sbjct: 68 KSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAIKV 126
>gi|385999574|ref|YP_005917873.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis CTRI-2]
gi|344220621|gb|AEN01252.1| tRNA pseudouridine synthase B [Mycobacterium tuberculosis CTRI-2]
Length = 298
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 77/119 (64%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+++KP G TS V G+ RR+ ++VGHAGTLDPMATG+L++ + +ATK++
Sbjct: 8 IVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTAAP 67
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ RLG+ TST DA+ V+Q P +H+ E I A RGEI QVP SAIKV
Sbjct: 68 KSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAIKV 126
>gi|333384088|ref|ZP_08475732.1| tRNA pseudouridine synthase B [Dysgonomonas gadei ATCC BAA-286]
gi|332826969|gb|EGJ99766.1| tRNA pseudouridine synthase B [Dysgonomonas gadei ATCC BAA-286]
Length = 229
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/136 (46%), Positives = 85/136 (62%), Gaps = 9/136 (6%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR-----RL-VKVKKVGHAGTLDPMATGLLIVCVGKATKL 362
G ++ +NKP WTSF + KLR RL VK KVGHAGTLDP+ATG++I+C GK TKL
Sbjct: 6 GEVLYINKPLNWTSFDLVRKLRNKLCRRLGVKKLKVGHAGTLDPLATGVMIICTGKKTKL 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y RLGE T ++D ++ V P +HI +E + + F GEI QVPP
Sbjct: 66 IETFQYQTKEYIATIRLGETTPSFDLETEVDGIYPADHITEELVNQILTQFIGEIQQVPP 125
Query: 423 MFSAIKV---RVFHFS 435
+SA KV R + F+
Sbjct: 126 TYSACKVEGKRAYEFA 141
>gi|325285813|ref|YP_004261603.1| tRNA pseudouridine synthase B [Cellulophaga lytica DSM 7489]
gi|324321267|gb|ADY28732.1| tRNA pseudouridine synthase B [Cellulophaga lytica DSM 7489]
Length = 236
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 80/126 (63%), Gaps = 6/126 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK------KVGHAGTLDPMATGLLIVCVGKATKL 362
G ++L++KP W+SF L+ ++ K K+GHAGTLDP+ATGLLI+C GK TK
Sbjct: 10 GQILLIDKPLTWSSFQAVNALKWGIRRKFDLKKIKIGHAGTLDPLATGLLIICTGKFTKK 69
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+ QG IK Y+G +G T ++D ++ V + P EHI E I A +F G+I QVPP
Sbjct: 70 IPTLQGQIKEYTGTITVGATTPSYDMETAVEKTYPTEHITTEKIHAATTNFIGKIQQVPP 129
Query: 423 MFSAIK 428
+FSA+K
Sbjct: 130 VFSALK 135
>gi|317474695|ref|ZP_07933969.1| tRNA pseudouridine synthase B [Bacteroides eggerthii 1_2_48FAA]
gi|316909376|gb|EFV31056.1| tRNA pseudouridine synthase B [Bacteroides eggerthii 1_2_48FAA]
Length = 234
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/127 (48%), Positives = 77/127 (60%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ NKP GWTSF V G R R +KVKK VGHAGTLDP+ATG++IVC GKATK
Sbjct: 6 GEVLFFNKPLGWTSFKVVGHARYHICRRIKVKKLKVGHAGTLDPLATGVMIVCTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y RLG T ++D + + P EHI E + + F GEI QVPP
Sbjct: 66 IEEFQYHTKEYVATIRLGATTPSYDLEHEIDATYPTEHITRELVEETLKRFVGEIQQVPP 125
Query: 423 MFSAIKV 429
FSA V
Sbjct: 126 AFSACMV 132
>gi|407983204|ref|ZP_11163861.1| tRNA pseudouridine(55) synthase [Mycobacterium hassiacum DSM 44199]
gi|407375097|gb|EKF24056.1| tRNA pseudouridine(55) synthase [Mycobacterium hassiacum DSM 44199]
Length = 293
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/119 (47%), Positives = 76/119 (63%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V G+ RR+ +KVGHAGTLDPMATG+L+V + +ATK++
Sbjct: 6 LVVVDKPAGMTSHDVVGRCRRIFGTRKVGHAGTLDPMATGVLVVGIDRATKILGLLTATD 65
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ RLG+ TST DA+ ++Q + DE I A + RGEI QVP SAIKV
Sbjct: 66 KSYTATIRLGQTTSTDDAEGELLQEVSARSVTDEQIGAAVGALRGEIDQVPSAVSAIKV 124
>gi|421860634|ref|ZP_16292740.1| pseudouridine synthase [Paenibacillus popilliae ATCC 14706]
gi|410829820|dbj|GAC43177.1| pseudouridine synthase [Paenibacillus popilliae ATCC 14706]
Length = 305
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/116 (49%), Positives = 75/116 (64%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V KP GWTS V K+RRL++ K++GH GTLDP G+L +CVG+AT+LV+ Q M K Y
Sbjct: 11 VWKPAGWTSHDVVAKVRRLIREKRIGHTGTLDPQVVGVLPLCVGRATRLVEYLQEMPKEY 70
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
RLG +T T D V++R H+ + I +A SF G I QVPPM+SA+KV
Sbjct: 71 EATLRLGVSTDTEDMSGEVVERADASHVTEAMIAEALLSFIGPIEQVPPMYSAVKV 126
>gi|89889580|ref|ZP_01201091.1| pseudouridine synthase [Flavobacteria bacterium BBFL7]
gi|89517853|gb|EAS20509.1| pseudouridine synthase [Flavobacteria bacterium BBFL7]
Length = 236
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/127 (43%), Positives = 81/127 (63%), Gaps = 6/127 (4%)
Query: 308 FGTMVLVNKPKGWTSFTVCGKLRRLVKVK------KVGHAGTLDPMATGLLIVCVGKATK 361
G ++L++KP GW+SF V K+R L+K + KVGHAGTLDP+A+GLLI+C GK TK
Sbjct: 14 LGQVLLIDKPLGWSSFQVVNKIRWLIKQEYGIKKIKVGHAGTLDPLASGLLIICTGKETK 73
Query: 362 LVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVP 421
+ YQ K Y+G LG T ++D ++ + R P + +E++ + F G+I Q P
Sbjct: 74 NIHVYQAQEKEYTGTITLGATTPSYDLETEIDNRFPISELTEENLIQTTNQFTGDIMQKP 133
Query: 422 PMFSAIK 428
P++SAIK
Sbjct: 134 PIYSAIK 140
>gi|399055581|ref|ZP_10743276.1| tRNA pseudouridine 55 synthase [Brevibacillus sp. CF112]
gi|398046790|gb|EJL39374.1| tRNA pseudouridine 55 synthase [Brevibacillus sp. CF112]
Length = 308
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/121 (49%), Positives = 80/121 (66%), Gaps = 2/121 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++++KP G TS ++RRL KKVGH GTLDP TG+L +CVG AT+LV+ Q +
Sbjct: 7 VLVIDKPAGMTSHDCVARIRRLYGTKKVGHTGTLDPDVTGVLPICVGNATRLVEYLQDLP 66
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWE--HIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y+ V RLG AT+T DA V+++ P + I E I + SF GEI QVPPMFSA+K
Sbjct: 67 KRYNVVLRLGSATTTEDASGEVLEQAPVDAAAITVERIEQLLQSFLGEIEQVPPMFSAVK 126
Query: 429 V 429
V
Sbjct: 127 V 127
>gi|218131683|ref|ZP_03460487.1| hypothetical protein BACEGG_03304 [Bacteroides eggerthii DSM 20697]
gi|217985986|gb|EEC52325.1| tRNA pseudouridine synthase B [Bacteroides eggerthii DSM 20697]
Length = 235
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/127 (48%), Positives = 77/127 (60%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ NKP GWTSF V G R R +KVKK VGHAGTLDP+ATG++IVC GKATK
Sbjct: 7 GEVLFFNKPLGWTSFKVVGHARYHICRRIKVKKLKVGHAGTLDPLATGVMIVCTGKATKR 66
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y RLG T ++D + + P EHI E + + F GEI QVPP
Sbjct: 67 IEEFQYHTKEYVATIRLGATTPSYDLEHDIDATYPTEHITRELVEETLKRFVGEIQQVPP 126
Query: 423 MFSAIKV 429
FSA V
Sbjct: 127 AFSACMV 133
>gi|336172395|ref|YP_004579533.1| tRNA pseudouridine synthase B [Lacinutrix sp. 5H-3-7-4]
gi|334726967|gb|AEH01105.1| tRNA pseudouridine synthase B [Lacinutrix sp. 5H-3-7-4]
Length = 232
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/126 (46%), Positives = 81/126 (64%), Gaps = 6/126 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++L++KP WTSF V KLR + K+KK VGHAGTLDP+ATGLL++C GK TK
Sbjct: 9 GQVLLIDKPLNWTSFQVVNKLRWEIKQAFKIKKIKVGHAGTLDPLATGLLVICTGKMTKQ 68
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +QG IK Y+G LG T ++D ++ + + HI + I + F GEI Q PP
Sbjct: 69 INTFQGQIKEYTGTIVLGSTTPSFDLETEINKTFSTSHITNYLIHQTTKQFIGEIDQFPP 128
Query: 423 MFSAIK 428
+FSA+K
Sbjct: 129 VFSALK 134
>gi|433546003|ref|ZP_20502341.1| tRNA pseudouridine synthase B [Brevibacillus agri BAB-2500]
gi|432182619|gb|ELK40182.1| tRNA pseudouridine synthase B [Brevibacillus agri BAB-2500]
Length = 308
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/121 (49%), Positives = 80/121 (66%), Gaps = 2/121 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++++KP G TS ++RRL KKVGH GTLDP TG+L +CVG AT+LV+ Q +
Sbjct: 7 VLVIDKPAGMTSHDCVARIRRLYGTKKVGHTGTLDPDVTGVLPICVGNATRLVEYLQDLP 66
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWE--HIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y+ V RLG AT+T DA V+++ P + I E I + SF GEI QVPPMFSA+K
Sbjct: 67 KRYNVVLRLGSATTTEDASGEVLEQAPVDAAAITVERIEQLLQSFLGEIEQVPPMFSAVK 126
Query: 429 V 429
V
Sbjct: 127 V 127
>gi|118464111|ref|YP_882859.1| tRNA pseudouridine synthase B [Mycobacterium avium 104]
gi|189036542|sp|A0QIX1.1|TRUB_MYCA1 RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|118165398|gb|ABK66295.1| tRNA pseudouridine synthase B [Mycobacterium avium 104]
Length = 309
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 76/119 (63%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V G+ RR+ ++VGHAGTLDPMATG+L++ V +ATK++
Sbjct: 6 LVVVDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVLGVERATKILGLLTAAA 65
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K YS RLG+ATST DA+ V++ H+ + I A RG+I QVP SAIKV
Sbjct: 66 KSYSATIRLGQATSTDDAEGDVVRSVDARHLTSQAIEAAVGGLRGDIHQVPSTVSAIKV 124
>gi|383782126|ref|YP_005466693.1| putative tRNA pseudouridine synthase [Actinoplanes missouriensis
431]
gi|381375359|dbj|BAL92177.1| putative tRNA pseudouridine synthase [Actinoplanes missouriensis
431]
Length = 293
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/120 (45%), Positives = 80/120 (66%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+KP G TS V ++RRL K ++VGH GTLDPMATG+LI+ V +AT+L+ G
Sbjct: 6 LIVVDKPAGMTSHDVVARIRRLAKTRRVGHGGTLDPMATGVLIIGVNRATRLLTYVIGAS 65
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVR 430
K Y+G RLG++T T DA+ + + P HI D+ I ++ + GEI QVP SAIK++
Sbjct: 66 KSYAGTIRLGQSTITDDAEGEITAQTPAGHIDDDAINESLRTQLGEIDQVPSAVSAIKIK 125
>gi|409098162|ref|ZP_11218186.1| tRNA pseudouridine synthase B [Pedobacter agri PB92]
Length = 243
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 78/123 (63%), Gaps = 2/123 (1%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVK--VKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
G ++L+NKP WTSF V GK+R +K KVGHAGTLDP+ATGLLI+C GK TK +D +
Sbjct: 16 GELLLINKPYKWTSFDVVGKIRNSLKPLKLKVGHAGTLDPLATGLLIICTGKLTKQIDTF 75
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
Q K Y+G LG T ++D ++ V +I ++DI A F G+I Q PP SA
Sbjct: 76 QAEEKEYTGTMILGATTPSFDMETEVDATFDISNISNQDIYNACKPFIGDIEQYPPAHSA 135
Query: 427 IKV 429
+KV
Sbjct: 136 VKV 138
>gi|302874666|ref|YP_003843299.1| tRNA pseudouridine synthase B [Clostridium cellulovorans 743B]
gi|307690720|ref|ZP_07633166.1| tRNA pseudouridine synthase B [Clostridium cellulovorans 743B]
gi|302577523|gb|ADL51535.1| tRNA pseudouridine synthase B [Clostridium cellulovorans 743B]
Length = 288
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 81/120 (67%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ V KP+G TSF V ++++ KK+GH GTLDP+ATG+L +C+G+ATKLVD
Sbjct: 4 IINVYKPQGITSFDVVRSVKKITGQKKIGHTGTLDPLATGVLPICIGRATKLVDYIMNGR 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVR 430
K Y +LG T T+D + V++ EH+ + ++++A SF GEI QVPPM+SA+KV+
Sbjct: 64 KTYIATLKLGVETDTYDREGEVLKTLATEHLSEAEVKEAINSFIGEIKQVPPMYSALKVQ 123
>gi|189220157|ref|YP_001940797.1| pseudouridine synthase [Methylacidiphilum infernorum V4]
gi|189187015|gb|ACD84200.1| Pseudouridine synthase [Methylacidiphilum infernorum V4]
Length = 237
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/118 (48%), Positives = 82/118 (69%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++LV+KPKG+TS V +R+ K+KKVGH GTLDP+ATGLL++ +GKATK+ D
Sbjct: 6 VLLVDKPKGFTSHDVVDFVRKKFKIKKVGHCGTLDPLATGLLVLVLGKATKIQDLLMSED 65
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y GV RLG++T T D+D +++ +P + E+I+K + G+ +QVPPM SAIK
Sbjct: 66 KRYEGVLRLGQSTLTQDSDGQLVEEKPVPPLSLEEIKKVFDRYVGDFYQVPPMISAIK 123
>gi|340622469|ref|YP_004740921.1| tRNA pseudouridylate synthase [Capnocytophaga canimorsus Cc5]
gi|339902735|gb|AEK23814.1| tRNA pseudouridylate synthase [Capnocytophaga canimorsus Cc5]
Length = 250
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/127 (44%), Positives = 81/127 (63%), Gaps = 8/127 (6%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR-------RLVKVKKVGHAGTLDPMATGLLIVCVGKATK 361
G ++L++KP W+SF K++ +L K+K +GHAGTLDP+A+GLL++C GK TK
Sbjct: 14 GQILLIDKPLHWSSFQAVNKIKWSIIKNYKLKKIK-IGHAGTLDPLASGLLVICTGKFTK 72
Query: 362 LVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVP 421
+ +Q +K Y+G RLG TS++D ++ + Q P HI E I + F GEI Q P
Sbjct: 73 KITEFQDALKTYTGTIRLGATTSSFDLETEIEQTFPIAHITPELIEQVRQQFVGEIEQTP 132
Query: 422 PMFSAIK 428
P+FSAIK
Sbjct: 133 PVFSAIK 139
>gi|399028536|ref|ZP_10729761.1| tRNA pseudouridine 55 synthase [Flavobacterium sp. CF136]
gi|398073874|gb|EJL65034.1| tRNA pseudouridine 55 synthase [Flavobacterium sp. CF136]
Length = 233
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/134 (44%), Positives = 83/134 (61%), Gaps = 10/134 (7%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK-------KVGHAGTLDPMATGLLIVCVGKATK 361
G ++L++KP W+SF KL+ L+ K K+GHAGTLDP+ATGLL++C GK TK
Sbjct: 9 GQVLLIDKPLKWSSFQAVNKLKYLLINKVGLPKKFKIGHAGTLDPLATGLLLICTGKFTK 68
Query: 362 LVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVP 421
+ QG K Y+G F +G T ++D ++ + Q P EHI + I + F GEI Q P
Sbjct: 69 RISELQGQAKEYTGTFYIGATTPSYDLETEIDQTFPTEHIDETLIHETVKQFLGEIDQKP 128
Query: 422 PMFSAIK---VRVF 432
P+FSAIK VR++
Sbjct: 129 PIFSAIKKDGVRLY 142
>gi|357019234|ref|ZP_09081489.1| tRNA pseudouridine synthase B [Mycobacterium thermoresistibile ATCC
19527]
gi|356480992|gb|EHI14105.1| tRNA pseudouridine synthase B [Mycobacterium thermoresistibile ATCC
19527]
Length = 301
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 56/123 (45%), Positives = 79/123 (64%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P +V+V+KP G TS V G+ RRL +KVGHAGTLDPMATG+L++ + +ATK++
Sbjct: 5 PPAGLVVVDKPGGLTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLVIGIERATKILGLL 64
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
K YS RLG++TST DA+ ++Q H+ D +I A + RG+I QVP SA
Sbjct: 65 AAGDKSYSATIRLGQSTSTDDAEGELLQTVSAIHLTDAEIEAAVGALRGDIEQVPSAVSA 124
Query: 427 IKV 429
+K+
Sbjct: 125 VKI 127
>gi|383451898|ref|YP_005358619.1| tRNA pseudouridine synthase B [Flavobacterium indicum GPTSA100-9]
gi|380503520|emb|CCG54562.1| tRNA pseudouridine synthase B [Flavobacterium indicum GPTSA100-9]
Length = 230
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 79/127 (62%), Gaps = 7/127 (5%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK-------KVGHAGTLDPMATGLLIVCVGKATK 361
G ++L++KP W+SF KL+ ++K K K+GHAGTLDP+ATGLLIVC GK TK
Sbjct: 9 GKVLLIDKPLTWSSFQAVNKLKFVLKRKYNLPKKFKIGHAGTLDPLATGLLIVCTGKFTK 68
Query: 362 LVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVP 421
+ GM+K Y+G +G T ++D ++ + P HI D I++ F GEI Q P
Sbjct: 69 RIPELMGMVKEYTGTITVGATTPSYDLETEINATFPTSHITDTLIQETTQQFLGEIEQFP 128
Query: 422 PMFSAIK 428
P+FSAIK
Sbjct: 129 PVFSAIK 135
>gi|397679918|ref|YP_006521453.1| tRNA pseudouridine synthase B [Mycobacterium massiliense str. GO
06]
gi|395458183|gb|AFN63846.1| tRNA pseudouridine synthase B [Mycobacterium massiliense str. GO
06]
Length = 313
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 76/119 (63%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V + RR+ +KVGHAGTLDPMATG+L++ + +ATK++
Sbjct: 25 LVIVDKPAGMTSHDVVSRCRRIFSTRKVGHAGTLDPMATGVLVIGIERATKIMGLLTLTT 84
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ R G++TST DA+ V+Q H+ + DI A A RG+I QVP SAIKV
Sbjct: 85 KSYAATIRFGQSTSTDDAEGEVLQTISASHLTEVDIEAAVAGLRGDIAQVPSSVSAIKV 143
>gi|418247743|ref|ZP_12874129.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 47J26]
gi|353452236|gb|EHC00630.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 47J26]
Length = 298
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 76/119 (63%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V + RR+ +KVGHAGTLDPMATG+L++ + +ATK++
Sbjct: 10 LVIVDKPAGMTSHDVVSRCRRIFSTRKVGHAGTLDPMATGVLVIGIERATKIMGLLTLTT 69
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ R G++TST DA+ V+Q H+ + DI A A RG+I QVP SAIKV
Sbjct: 70 KSYAATIRFGQSTSTDDAEGEVLQTISASHLTEVDIEAAVAGLRGDIAQVPSSVSAIKV 128
>gi|354581529|ref|ZP_09000433.1| tRNA pseudouridine synthase B [Paenibacillus lactis 154]
gi|353201857|gb|EHB67310.1| tRNA pseudouridine synthase B [Paenibacillus lactis 154]
Length = 304
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 79/119 (66%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ V+KP GWTS V K+R +V++K++GH GTLDP TG+L +C+G+AT++V+ Q +
Sbjct: 7 ILAVHKPAGWTSHDVVAKVRGIVRMKRIGHTGTLDPEVTGVLPLCLGRATRVVEYMQELP 66
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y V RLG AT T D VI+ + E+ +A SF GEI QVPPM+SA+KV
Sbjct: 67 KEYEAVLRLGYATDTEDVTGTVIEEAESVLVTREEAEEALRSFVGEISQVPPMYSAVKV 125
>gi|146298333|ref|YP_001192924.1| tRNA pseudouridine synthase B [Flavobacterium johnsoniae UW101]
gi|13959602|sp|Q9RB36.1|TRUB_FLAJ1 RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|5739402|gb|AAD50463.1|AF169967_6 TruB [Flavobacterium johnsoniae UW101]
gi|146152751|gb|ABQ03605.1| tRNA pseudouridine synthase B [Flavobacterium johnsoniae UW101]
Length = 229
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 59/134 (44%), Positives = 83/134 (61%), Gaps = 10/134 (7%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK-------KVGHAGTLDPMATGLLIVCVGKATK 361
G ++L++KP W+SF KL+ L+ K K+GHAGTLDP+ATGLL++C GK TK
Sbjct: 9 GQVLLIDKPLKWSSFQAVNKLKYLLINKVGLPKKFKIGHAGTLDPLATGLLLICTGKFTK 68
Query: 362 LVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVP 421
+ QG K Y+G F +G T ++D ++ + Q P EHI + I + F GEI Q P
Sbjct: 69 KISELQGQAKEYTGTFYIGATTPSYDLETEIDQTFPTEHINEVLIHETVKQFLGEIDQKP 128
Query: 422 PMFSAIK---VRVF 432
P+FSAIK VR++
Sbjct: 129 PIFSAIKKDGVRLY 142
>gi|429767502|ref|ZP_19299699.1| tRNA pseudouridine synthase B [Clostridium celatum DSM 1785]
gi|429180912|gb|EKY22113.1| tRNA pseudouridine synthase B [Clostridium celatum DSM 1785]
Length = 292
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 56/123 (45%), Positives = 80/123 (65%), Gaps = 3/123 (2%)
Query: 316 KPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSG 375
KP G TSF V ++++ KVGH GTLDP A+G+L VCVG+ATK++D K Y
Sbjct: 9 KPTGMTSFDVVRIVKKVCNTGKVGHTGTLDPEASGVLPVCVGRATKIIDYIMDSKKVYEV 68
Query: 376 VFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK---VRVF 432
VF+LG T+T+D + V++ E +KDEDI K SF+G+ Q+PPM+SA+K VR++
Sbjct: 69 VFKLGIRTTTYDLEGEVLEERNTESLKDEDILKVVNSFKGQYSQIPPMYSALKQNGVRLY 128
Query: 433 HFS 435
+
Sbjct: 129 ELA 131
>gi|419716874|ref|ZP_14244269.1| tRNA pseudouridine synthase B [Mycobacterium abscessus M94]
gi|382940435|gb|EIC64759.1| tRNA pseudouridine synthase B [Mycobacterium abscessus M94]
Length = 298
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 76/119 (63%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V + RR+ +KVGHAGTLDPMATG+L++ + +ATK++
Sbjct: 10 LVIVDKPAGMTSHDVVSRCRRIFSTRKVGHAGTLDPMATGVLVIGIERATKIMGLLTLTT 69
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ R G++TST DA+ V+Q H+ + DI A A RG+I QVP SAIKV
Sbjct: 70 KSYAATIRFGQSTSTDDAEGEVLQTISASHLTEVDIEAAVAGLRGDIAQVPSSVSAIKV 128
>gi|345868996|ref|ZP_08820959.1| tRNA pseudouridine synthase B [Bizionia argentinensis JUB59]
gi|344046480|gb|EGV42141.1| tRNA pseudouridine synthase B [Bizionia argentinensis JUB59]
Length = 231
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 79/126 (62%), Gaps = 6/126 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR------RLVKVKKVGHAGTLDPMATGLLIVCVGKATKL 362
G ++L++KP WTSF KLR +K KVGHAGTLDP+ATGLLI+C GK TK
Sbjct: 10 GQVLLIDKPLNWTSFQAVNKLRWEIRNAFDIKKIKVGHAGTLDPLATGLLIICTGKMTKQ 69
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+D +QG K Y+G LG T ++D ++ + P EHI + I +A F G+I Q PP
Sbjct: 70 IDSFQGQDKEYTGTIVLGGTTPSYDLETEIDTTFPTEHITETMIHEATKQFIGDIDQFPP 129
Query: 423 MFSAIK 428
+FSA+K
Sbjct: 130 VFSALK 135
>gi|315444939|ref|YP_004077818.1| tRNA pseudouridine synthase B [Mycobacterium gilvum Spyr1]
gi|315263242|gb|ADT99983.1| tRNA pseudouridine synthase B [Mycobacterium gilvum Spyr1]
Length = 294
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 76/119 (63%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V G+ RRL +KVGHAGTLDPMATG+L+V + +ATK++
Sbjct: 7 LVVVDKPGGMTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLVVGIERATKILGLLTATD 66
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ RLG+ TST DA+ ++ + + DE I +A A RG I QVP SAIK+
Sbjct: 67 KSYTATLRLGQTTSTEDAEGELLHQVSAAQVTDEQIERAIAPLRGAIEQVPSAVSAIKI 125
>gi|410095978|ref|ZP_11290969.1| tRNA pseudouridine synthase B [Parabacteroides goldsteinii
CL02T12C30]
gi|409227384|gb|EKN20282.1| tRNA pseudouridine synthase B [Parabacteroides goldsteinii
CL02T12C30]
Length = 235
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 61/127 (48%), Positives = 79/127 (62%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ NKP WTSF + K R R +KVKK VGHAGTLDP+ATG++IVC G+ATK
Sbjct: 6 GEVLYFNKPLTWTSFDLVNKFRYKLSRKLKVKKIKVGHAGTLDPLATGVMIVCTGRATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+D +Q K Y +LGE T ++D + V P EHI E + + SF G I Q+PP
Sbjct: 66 IDEFQYQTKEYVATLKLGETTPSFDLEKEVDAVYPTEHITREKVEEVLNSFVGTIQQIPP 125
Query: 423 MFSAIKV 429
+FSA KV
Sbjct: 126 VFSACKV 132
>gi|329956419|ref|ZP_08297016.1| tRNA pseudouridine synthase B [Bacteroides clarus YIT 12056]
gi|328524316|gb|EGF51386.1| tRNA pseudouridine synthase B [Bacteroides clarus YIT 12056]
Length = 237
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 62/127 (48%), Positives = 77/127 (60%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ NKP GWTSF V G R R +KVKK VGHAGTLDP+ATG++IVC GKATK
Sbjct: 9 GEVLYFNKPLGWTSFKVVGHARYHICRRMKVKKLKVGHAGTLDPLATGVMIVCTGKATKR 68
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y RLG T ++D + + P EHI E + + F GEI QVPP
Sbjct: 69 IEEFQYHTKEYIATIRLGATTPSYDLEHEIDATYPTEHITRELVEETLKRFIGEIQQVPP 128
Query: 423 MFSAIKV 429
FSA V
Sbjct: 129 AFSACMV 135
>gi|374599764|ref|ZP_09672766.1| tRNA pseudouridine synthase B [Myroides odoratus DSM 2801]
gi|423324921|ref|ZP_17302762.1| tRNA pseudouridine synthase B [Myroides odoratimimus CIP 103059]
gi|373911234|gb|EHQ43083.1| tRNA pseudouridine synthase B [Myroides odoratus DSM 2801]
gi|404606930|gb|EKB06464.1| tRNA pseudouridine synthase B [Myroides odoratimimus CIP 103059]
Length = 235
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 56/126 (44%), Positives = 80/126 (63%), Gaps = 6/126 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK------KVGHAGTLDPMATGLLIVCVGKATKL 362
G ++L++KP W+SF K++ L+K + KVGHAGTLDP+ATGLL++C GKATK
Sbjct: 11 GQVLLIDKPLHWSSFQAVNKIKWLLKKEYGLKKIKVGHAGTLDPLATGLLLICTGKATKT 70
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+ QG K Y+G F +G T ++D ++ + Q P HI +E I + SF G Q PP
Sbjct: 71 ITDLQGQEKEYTGTFHIGATTPSYDLETEINQTFPTNHITEEMIEQTRVSFLGTTEQRPP 130
Query: 423 MFSAIK 428
+FSA+K
Sbjct: 131 IFSALK 136
>gi|169630198|ref|YP_001703847.1| tRNA pseudouridine synthase B [Mycobacterium abscessus ATCC 19977]
gi|254764886|sp|B1MD72.1|TRUB_MYCA9 RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|169242165|emb|CAM63193.1| tRNA pseudouridine synthase B (TruB) [Mycobacterium abscessus]
Length = 298
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 76/119 (63%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V + RR+ +KVGHAGTLDPMATG+L++ + +ATK++
Sbjct: 10 LVIVDKPAGMTSHDVVSRCRRIFSTRKVGHAGTLDPMATGVLVIGIERATKIMGLLTLTT 69
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ R G++TST DA+ V+Q H+ + DI A A RG+I QVP SAIKV
Sbjct: 70 KSYAATIRFGQSTSTDDAEGEVLQTISASHLTEVDIEAAVAGLRGDIAQVPSSVSAIKV 128
>gi|340617314|ref|YP_004735767.1| tRNA pseudouridine synthase B [Zobellia galactanivorans]
gi|339732111|emb|CAZ95379.1| tRNA pseudouridine synthase B [Zobellia galactanivorans]
Length = 237
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 56/126 (44%), Positives = 79/126 (62%), Gaps = 6/126 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK------KVGHAGTLDPMATGLLIVCVGKATKL 362
G ++L++KP GW+SF KL+ ++ K K+GHAGTLDP+ATGLLI+C GK TK
Sbjct: 12 GQILLIDKPLGWSSFQAVNKLKWAIRSKFKLKKFKIGHAGTLDPLATGLLIICCGKFTKK 71
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+ QG +K Y+G LG T ++D ++ V Q P EHI + + F G+I Q PP
Sbjct: 72 IPELQGQVKEYTGTITLGATTPSYDLETEVDQTYPTEHITKALLNETLLQFIGDIEQRPP 131
Query: 423 MFSAIK 428
+FSA+K
Sbjct: 132 VFSALK 137
>gi|424665731|ref|ZP_18102767.1| tRNA pseudouridine synthase B [Bacteroides fragilis HMW 616]
gi|404573984|gb|EKA78735.1| tRNA pseudouridine synthase B [Bacteroides fragilis HMW 616]
Length = 233
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 61/127 (48%), Positives = 79/127 (62%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ +KP GWTSF V G R R +KVKK VGHAGTLDP+ATG++IVC GKATK
Sbjct: 6 GEVLYFDKPLGWTSFKVVGHARYHICRRIKVKKLKVGHAGTLDPLATGVMIVCTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y +LG T ++D + + P EHI E + + +F GEI QVPP
Sbjct: 66 IEEFQYHTKEYIATIQLGATTPSYDLEHEIDATYPTEHITRELVEETLKTFVGEIQQVPP 125
Query: 423 MFSAIKV 429
FSA KV
Sbjct: 126 AFSACKV 132
>gi|256832253|ref|YP_003160980.1| tRNA pseudouridine synthase B [Jonesia denitrificans DSM 20603]
gi|256685784|gb|ACV08677.1| tRNA pseudouridine synthase B [Jonesia denitrificans DSM 20603]
Length = 333
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 59/129 (45%), Positives = 78/129 (60%), Gaps = 4/129 (3%)
Query: 301 PPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKAT 360
P DG +++V+KP G TS V +RRL +KVGHAGTLDPMATGLL+V VG+ T
Sbjct: 28 PTAADG----IIVVDKPTGMTSHDVVAIMRRLAGTRKVGHAGTLDPMATGLLVVGVGRGT 83
Query: 361 KLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQV 420
+L+ K Y+ RLG AT + DAD V +P +H+ E ++ AAA G I QV
Sbjct: 84 RLLHFLTAADKSYTATVRLGVATVSEDADGDVTDTQPCDHVTREQLQAAAARLTGVIDQV 143
Query: 421 PPMFSAIKV 429
P SA+K+
Sbjct: 144 PSAVSAVKI 152
>gi|359411438|ref|ZP_09203903.1| tRNA pseudouridine synthase B [Clostridium sp. DL-VIII]
gi|357170322|gb|EHI98496.1| tRNA pseudouridine synthase B [Clostridium sp. DL-VIII]
Length = 300
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 57/123 (46%), Positives = 78/123 (63%), Gaps = 3/123 (2%)
Query: 316 KPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSG 375
K KG +SF V K+++L KKVGH GTLDP ATG+L VC+GKATK +D KGY
Sbjct: 18 KNKGMSSFDVVRKIKKLADEKKVGHTGTLDPEATGVLPVCIGKATKTIDYIMNSNKGYEV 77
Query: 376 VFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK---VRVF 432
F G T+T+D + V++R H+ +E++ K SF GE QVPPM+SA+K VR++
Sbjct: 78 KFLFGVKTTTYDLEGEVVERNETSHLTEEEVSKVILSFIGEYDQVPPMYSALKKNGVRLY 137
Query: 433 HFS 435
+
Sbjct: 138 ELA 140
>gi|419709646|ref|ZP_14237114.1| tRNA pseudouridine synthase B [Mycobacterium abscessus M93]
gi|382943527|gb|EIC67841.1| tRNA pseudouridine synthase B [Mycobacterium abscessus M93]
Length = 298
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 76/119 (63%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V + RR+ +KVGHAGTLDPMATG+L++ + +ATK++
Sbjct: 10 LVIVDKPAGMTSHDVVSRCRRIFSTRKVGHAGTLDPMATGVLVIGIERATKIMGLLTLTT 69
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ R G++TST DA+ V+Q H+ + DI A A RG+I QVP SAIKV
Sbjct: 70 KSYAATIRFGQSTSTDDAEGEVLQTISASHLTEVDIEAAVAGLRGDIAQVPSSVSAIKV 128
>gi|256420717|ref|YP_003121370.1| tRNA pseudouridine synthase B [Chitinophaga pinensis DSM 2588]
gi|256035625|gb|ACU59169.1| tRNA pseudouridine synthase B [Chitinophaga pinensis DSM 2588]
Length = 232
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 58/120 (48%), Positives = 75/120 (62%), Gaps = 1/120 (0%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQG 368
G +VL+NKP WTSF + K+R K K GHAGTLDP+ATGLLI C GK TK ++ YQ
Sbjct: 13 GQVVLINKPLKWTSFDIVRKIRNTTKAK-TGHAGTLDPLATGLLICCTGKMTKKINEYQA 71
Query: 369 MIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y+G F +G T T+D +S +P + I +E I F GE+ Q+PP+ SAIK
Sbjct: 72 QEKEYTGTFTIGATTPTYDLESEPTDFKPLDGITEELIHDTTKQFIGELQQLPPIHSAIK 131
>gi|387792085|ref|YP_006257150.1| tRNA pseudouridine 55 synthase [Solitalea canadensis DSM 3403]
gi|379654918|gb|AFD07974.1| tRNA pseudouridine 55 synthase [Solitalea canadensis DSM 3403]
Length = 257
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 61/123 (49%), Positives = 74/123 (60%), Gaps = 2/123 (1%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVKK--VGHAGTLDPMATGLLIVCVGKATKLVDRY 366
G ++LVNKP WTSF V GK+R K K VGHAGTLDP+A GLLI+C GK TK +D Y
Sbjct: 37 GEVLLVNKPYKWTSFDVVGKIRNAFKPAKIKVGHAGTLDPLAKGLLIICTGKFTKKIDDY 96
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
Q K Y+G F LG T ++D ++ V R HI I F GEI QV P SA
Sbjct: 97 QAQEKEYTGTFVLGATTPSYDMETEVDVRYDIRHITPAHILDTIPHFLGEIEQVAPAHSA 156
Query: 427 IKV 429
+K+
Sbjct: 157 LKI 159
>gi|384916219|ref|ZP_10016393.1| tRNA pseudouridine synthase B [Methylacidiphilum fumariolicum SolV]
gi|384526377|emb|CCG92266.1| tRNA pseudouridine synthase B [Methylacidiphilum fumariolicum SolV]
Length = 237
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 82/118 (69%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++LV+KPKG+TS + +R+ +KKVGH GTLDPMATGLL++ +GKATK+ D
Sbjct: 6 VLLVDKPKGYTSHDMVDFVRKKFNIKKVGHCGTLDPMATGLLVLVLGKATKIQDLLMSED 65
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y GV RLG++T+T D+D +++ +P + E++++ F G+ +Q+PPM SAIK
Sbjct: 66 KRYEGVLRLGQSTTTQDSDGKIVEEKPVPPLSLEELKQVFDRFVGDFYQIPPMISAIK 123
>gi|167763959|ref|ZP_02436086.1| hypothetical protein BACSTE_02342 [Bacteroides stercoris ATCC
43183]
gi|167698075|gb|EDS14654.1| tRNA pseudouridine synthase B [Bacteroides stercoris ATCC 43183]
Length = 236
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 62/127 (48%), Positives = 77/127 (60%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ NKP GWTSF V G R R +KVKK VGHAGTLDP+ATG++IVC GKATK
Sbjct: 7 GEVLYFNKPLGWTSFKVVGHARYHICRRMKVKKLKVGHAGTLDPLATGVMIVCTGKATKR 66
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y RLG T ++D + + P EHI E + + F GEI QVPP
Sbjct: 67 IEEFQYHTKEYIATIRLGATTPSYDLEHEIDATYPTEHITRELVEETLKKFTGEIQQVPP 126
Query: 423 MFSAIKV 429
FSA V
Sbjct: 127 AFSACMV 133
>gi|305681528|ref|ZP_07404335.1| tRNA pseudouridine synthase B [Corynebacterium matruchotii ATCC
14266]
gi|305659733|gb|EFM49233.1| tRNA pseudouridine synthase B [Corynebacterium matruchotii ATCC
14266]
Length = 302
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 75/125 (60%), Gaps = 2/125 (1%)
Query: 307 PFGT--MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVD 364
P T +V+V+KP G TS V G+LRR+ ++VGHAGTLDP+ATG+LIV + + TK +
Sbjct: 8 PLATSGLVVVDKPAGMTSHDVIGRLRRIFHTRRVGHAGTLDPLATGVLIVGINRGTKFLT 67
Query: 365 RYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMF 424
K Y RLG AT+T DA+ I R H+ D+DI A + F G I Q P
Sbjct: 68 HLVAATKSYQATIRLGMATTTDDAEGAEISRADTTHLTDDDITAALSQFIGRIMQRPAAV 127
Query: 425 SAIKV 429
SAIK+
Sbjct: 128 SAIKI 132
>gi|373952867|ref|ZP_09612827.1| tRNA pseudouridine synthase B [Mucilaginibacter paludis DSM 18603]
gi|373889467|gb|EHQ25364.1| tRNA pseudouridine synthase B [Mucilaginibacter paludis DSM 18603]
Length = 241
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 58/123 (47%), Positives = 77/123 (62%), Gaps = 2/123 (1%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVK--VKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
G ++LVNKP WTSF V GK+R +K KVGHAGTLDP+ATGLLI+C GK TK +D +
Sbjct: 16 GELLLVNKPYNWTSFDVVGKIRNTLKPLKLKVGHAGTLDPLATGLLIICTGKLTKQIDTF 75
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
Q K Y+G LG T ++D ++ V + + + IR A F G+I Q PP SA
Sbjct: 76 QAEEKEYTGTMILGATTPSYDMETDVDETFDPGSLTEAQIRANCAQFTGDIQQYPPAHSA 135
Query: 427 IKV 429
+K+
Sbjct: 136 VKI 138
>gi|345516465|ref|ZP_08795956.1| tRNA pseudouridine synthase B [Bacteroides dorei 5_1_36/D4]
gi|345455509|gb|EEO48217.2| tRNA pseudouridine synthase B [Bacteroides dorei 5_1_36/D4]
Length = 241
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 77/127 (60%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ +KP GWTSF V G +R R + VKK VGHAGTLDP+ATG++IVC GKATK
Sbjct: 8 GEVLCFDKPLGWTSFKVVGHVRYHLCRHLGVKKLKVGHAGTLDPLATGVMIVCTGKATKR 67
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y RLG T ++D + V P EHI + + + F GEIWQ PP
Sbjct: 68 IEEFQYHTKEYVATLRLGATTPSYDLEHEVDATYPTEHITRQLVEETLQKFTGEIWQTPP 127
Query: 423 MFSAIKV 429
FSA V
Sbjct: 128 AFSACMV 134
>gi|296111958|ref|YP_003622340.1| pseudouridylate synthase [Leuconostoc kimchii IMSNU 11154]
gi|295833490|gb|ADG41371.1| pseudouridylate synthase [Leuconostoc kimchii IMSNU 11154]
Length = 305
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 59/129 (45%), Positives = 82/129 (63%), Gaps = 4/129 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++VNKP+G TSF V ++RR+V K+VGHAGTLDP G+L++ +GKATKL+D Q
Sbjct: 10 IIVVNKPRGLTSFDVVSRIRRVVGQKRVGHAGTLDPNVDGVLVIALGKATKLIDELQARP 69
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG AT T D D +I ++ E DE I A G+I Q+ PMFSA+KV
Sbjct: 70 KRYIGSITLGFATETEDLDGEIIAQQAIEKPYTDEAIDNAIVQLNGDIKQIAPMFSAVKV 129
Query: 430 ---RVFHFS 435
R++ ++
Sbjct: 130 NGKRLYEYA 138
>gi|339490767|ref|YP_004705272.1| pseudouridylate synthase [Leuconostoc sp. C2]
gi|338852439|gb|AEJ30649.1| pseudouridylate synthase [Leuconostoc sp. C2]
Length = 305
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 59/129 (45%), Positives = 82/129 (63%), Gaps = 4/129 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++VNKP+G TSF V ++RR+V K+VGHAGTLDP G+L++ +GKATKL+D Q
Sbjct: 10 IIVVNKPRGLTSFDVVSRIRRVVGQKRVGHAGTLDPNVDGVLVIALGKATKLIDELQARP 69
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG AT T D D +I ++ E DE I A G+I Q+ PMFSA+KV
Sbjct: 70 KRYIGSITLGFATETEDLDGEIIAQQAIEKPYTDEAIDNAIVQLNGDIKQIAPMFSAVKV 129
Query: 430 ---RVFHFS 435
R++ ++
Sbjct: 130 NGKRLYEYA 138
>gi|319900630|ref|YP_004160358.1| tRNA pseudouridine synthase B [Bacteroides helcogenes P 36-108]
gi|319415661|gb|ADV42772.1| tRNA pseudouridine synthase B [Bacteroides helcogenes P 36-108]
Length = 235
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 61/127 (48%), Positives = 77/127 (60%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGK-----LRRL-VKVKKVGHAGTLDPMATGLLIVCVGKATKL 362
G ++ NKP GWTSF V G RR+ VK KVGHAGTLDP+ATG++IVC G+ATK
Sbjct: 7 GEVLYFNKPLGWTSFKVVGHARYHICRRMGVKKLKVGHAGTLDPLATGVMIVCTGRATKR 66
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y RLG T ++D + V P EHI E + +A F GEI Q+PP
Sbjct: 67 IEEFQYHTKEYVATIRLGATTPSYDLEHEVDATYPTEHITREMVEEALKKFIGEIQQIPP 126
Query: 423 MFSAIKV 429
FSA V
Sbjct: 127 AFSACMV 133
>gi|189464706|ref|ZP_03013491.1| hypothetical protein BACINT_01050 [Bacteroides intestinalis DSM
17393]
gi|189436980|gb|EDV05965.1| tRNA pseudouridine synthase B [Bacteroides intestinalis DSM 17393]
Length = 233
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 61/127 (48%), Positives = 78/127 (61%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ NKP GWTSF V G R R +KVKK VGHAGTLDP+ATG++IVC GKATK
Sbjct: 6 GEVLYFNKPLGWTSFKVVGHARYHICRRMKVKKLKVGHAGTLDPLATGVMIVCTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y +LG T ++D + + P EHI E + + +F GEI QVPP
Sbjct: 66 IEEFQYHTKEYVATIQLGATTPSYDLEHEIDATYPTEHITRELVEETLKTFIGEIQQVPP 125
Query: 423 MFSAIKV 429
FSA V
Sbjct: 126 AFSACMV 132
>gi|224537234|ref|ZP_03677773.1| hypothetical protein BACCELL_02111 [Bacteroides cellulosilyticus
DSM 14838]
gi|423222999|ref|ZP_17209468.1| tRNA pseudouridine synthase B [Bacteroides cellulosilyticus
CL02T12C19]
gi|224521157|gb|EEF90262.1| hypothetical protein BACCELL_02111 [Bacteroides cellulosilyticus
DSM 14838]
gi|392640575|gb|EIY34374.1| tRNA pseudouridine synthase B [Bacteroides cellulosilyticus
CL02T12C19]
Length = 233
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 61/127 (48%), Positives = 78/127 (61%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ NKP GWTSF V G R R +KVKK VGHAGTLDP+ATG++IVC GKATK
Sbjct: 6 GEVLYFNKPLGWTSFKVVGHARYHICRRMKVKKLKVGHAGTLDPLATGVMIVCTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y +LG T ++D + + P EHI E + + +F GEI QVPP
Sbjct: 66 IEEFQYHTKEYVATIQLGATTPSYDLEHEIDATYPTEHITRELVEETLKTFIGEIQQVPP 125
Query: 423 MFSAIKV 429
FSA V
Sbjct: 126 AFSACMV 132
>gi|397690713|ref|YP_006527967.1| tRNA pseudouridine synthase B [Melioribacter roseus P3M]
gi|395812205|gb|AFN74954.1| tRNA pseudouridine synthase B [Melioribacter roseus P3M]
Length = 240
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 55/124 (44%), Positives = 81/124 (65%)
Query: 305 DGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVD 364
D P G VL++KP TSF + ++R+ V VKKVGHAGTLDP+ATGLLI+C G+ TK +
Sbjct: 15 DFPNGEAVLIDKPIRRTSFDMVHRVRKAVNVKKVGHAGTLDPLATGLLIICTGRFTKRIS 74
Query: 365 RYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMF 424
+ + K Y+G+ LG+ T ++D ++ I +E I K A+ F G+ +Q+PPM+
Sbjct: 75 EFSNLNKVYTGIISLGKTTPSYDLETEFDSSRDISGIDEEIIYKTASGFIGKSFQLPPMY 134
Query: 425 SAIK 428
SA+K
Sbjct: 135 SAVK 138
>gi|380693038|ref|ZP_09857897.1| tRNA pseudouridine synthase B [Bacteroides faecis MAJ27]
Length = 240
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 76/127 (59%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ NKP GWTSF V G +R R + VKK VGHAGTLDP+ATG++IVC GKATK
Sbjct: 6 GEVLFFNKPLGWTSFKVVGHVRYHICRRIGVKKLKVGHAGTLDPLATGVMIVCTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y RLG T ++D + + P EHI E + + F G I QVPP
Sbjct: 66 IEEFQYHTKEYVATLRLGATTPSYDLEHEIDATYPTEHITRELVEETLTHFLGAIEQVPP 125
Query: 423 MFSAIKV 429
FSA V
Sbjct: 126 AFSACMV 132
>gi|269956013|ref|YP_003325802.1| tRNA pseudouridine synthase B [Xylanimonas cellulosilytica DSM
15894]
gi|269304694|gb|ACZ30244.1| tRNA pseudouridine synthase B [Xylanimonas cellulosilytica DSM
15894]
Length = 325
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 59/119 (49%), Positives = 76/119 (63%), Gaps = 1/119 (0%)
Query: 312 VLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIK 371
V+V+KP GWTS V GK+R L +KVGHAGTLDPMATG+L+V +G+AT+L+ G K
Sbjct: 26 VIVDKPAGWTSHDVVGKVRWLAGTRKVGHAGTLDPMATGVLVVGIGRATRLLTYVVGADK 85
Query: 372 GYSGVFRLGEATSTWDADSPVIQREPWEHIKDED-IRKAAASFRGEIWQVPPMFSAIKV 429
Y RLG T+T DA+ V+ + D+D +R A A G+I QVP SAIKV
Sbjct: 86 AYDATIRLGVGTTTDDAEGEVVATPGFTGTADDDALRAAVADLTGDILQVPTTVSAIKV 144
>gi|300173104|ref|YP_003772270.1| tRNA pseudouridine synthase B [Leuconostoc gasicomitatum LMG 18811]
gi|299887483|emb|CBL91451.1| tRNA pseudouridine synthase B [Leuconostoc gasicomitatum LMG 18811]
Length = 302
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 63/129 (48%), Positives = 81/129 (62%), Gaps = 4/129 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++VNKP+G TSF V K+RR + KKVGHAGTLDP G+L+V +GKATKL+D Q
Sbjct: 10 LIVVNKPRGVTSFDVVAKVRRAIGQKKVGHAGTLDPNVDGVLVVALGKATKLIDELQTRP 69
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG AT T D D VI + + D I A A+ G I QVPPMFSA+KV
Sbjct: 70 KQYVGSITLGFATETEDLDGEVISKVDIDVPFTDAAIDTAIANLNGAIKQVPPMFSAVKV 129
Query: 430 ---RVFHFS 435
R++ ++
Sbjct: 130 GGKRLYEYA 138
>gi|225021174|ref|ZP_03710366.1| hypothetical protein CORMATOL_01186 [Corynebacterium matruchotii
ATCC 33806]
gi|224946081|gb|EEG27290.1| hypothetical protein CORMATOL_01186 [Corynebacterium matruchotii
ATCC 33806]
Length = 302
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 75/125 (60%), Gaps = 2/125 (1%)
Query: 307 PFGT--MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVD 364
P T +V+V+KP G TS V G+LRR+ ++VGHAGTLDP+ATG+LIV + + TK +
Sbjct: 8 PLATSGLVVVDKPAGMTSHDVIGRLRRIFHTRRVGHAGTLDPLATGVLIVGINRGTKFLT 67
Query: 365 RYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMF 424
K Y RLG AT+T DA+ I R H+ D+DI A + F G I Q P
Sbjct: 68 HLVAATKSYQATIRLGMATTTDDAEGAEISRADTTHLTDDDIAAALSQFIGRIMQRPAAV 127
Query: 425 SAIKV 429
SAIK+
Sbjct: 128 SAIKI 132
>gi|406673223|ref|ZP_11080447.1| tRNA pseudouridine synthase B [Bergeyella zoohelcum CCUG 30536]
gi|405586685|gb|EKB60435.1| tRNA pseudouridine synthase B [Bergeyella zoohelcum CCUG 30536]
Length = 232
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 81/127 (63%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGK----LRRLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++LV+KP WTSF K L+R K+KK VGHAGTLDP ATGLLIVC+GKATK
Sbjct: 9 GQILLVDKPIDWTSFQAVNKIKFKLKREYKLKKIKVGHAGTLDPKATGLLIVCIGKATKQ 68
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+ Q K Y +LG T+++D + P I +P + I ++ + + F G+I Q+PP
Sbjct: 69 ISEIQDAPKEYVAEIKLGAQTTSYDTEKPEILHQPIDEITEDKVTQTLEKFMGDIMQIPP 128
Query: 423 MFSAIKV 429
+FSA+K+
Sbjct: 129 VFSALKI 135
>gi|423281334|ref|ZP_17260245.1| tRNA pseudouridine synthase B [Bacteroides fragilis HMW 610]
gi|404583038|gb|EKA87721.1| tRNA pseudouridine synthase B [Bacteroides fragilis HMW 610]
Length = 233
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 61/127 (48%), Positives = 79/127 (62%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ +KP GWTSF V G R R +KVKK VGHAGTLDP+ATG++IVC GKATK
Sbjct: 6 GEVLYFDKPLGWTSFKVVGHARYHICRRMKVKKLKVGHAGTLDPLATGVMIVCTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y +LG T ++D + + P EHI E + + +F GEI QVPP
Sbjct: 66 IEEFQYHTKEYIATIQLGATTPSYDLEHEIDATYPTEHITRELVEETLKTFVGEIQQVPP 125
Query: 423 MFSAIKV 429
FSA KV
Sbjct: 126 AFSACKV 132
>gi|386818877|ref|ZP_10106093.1| tRNA pseudouridine 55 synthase [Joostella marina DSM 19592]
gi|386423983|gb|EIJ37813.1| tRNA pseudouridine 55 synthase [Joostella marina DSM 19592]
Length = 231
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 81/126 (64%), Gaps = 6/126 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVKK------VGHAGTLDPMATGLLIVCVGKATKL 362
G ++L++KP W+SF K++ +K K VGHAGTLDP+ATGLLI+C GK TK
Sbjct: 11 GQILLIDKPLTWSSFQAVNKIKWAIKKKFGLKKIKVGHAGTLDPLATGLLIICTGKFTKK 70
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+ QG IK Y+G LG ++D ++ V Q P EHI +E I++A +F GEI Q PP
Sbjct: 71 IPELQGQIKEYTGTITLGATRPSYDMETEVDQVFPIEHISEEKIKEATKNFIGEIDQFPP 130
Query: 423 MFSAIK 428
+FSA+K
Sbjct: 131 VFSALK 136
>gi|329963283|ref|ZP_08300996.1| tRNA pseudouridine synthase B [Bacteroides fluxus YIT 12057]
gi|328528822|gb|EGF55766.1| tRNA pseudouridine synthase B [Bacteroides fluxus YIT 12057]
Length = 233
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 62/127 (48%), Positives = 76/127 (59%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ NKP GWTSF V G R R + VKK VGHAGTLDP+ATG++IVC GKATK
Sbjct: 7 GEVLYFNKPLGWTSFKVVGHARYHICRRIGVKKLKVGHAGTLDPLATGVMIVCTGKATKR 66
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y RLG T ++D + + P EHI E + A F GEI QVPP
Sbjct: 67 IEEFQYHTKEYVATIRLGATTPSYDLEHEIDATYPTEHITRELVEGALKKFVGEIQQVPP 126
Query: 423 MFSAIKV 429
FSA V
Sbjct: 127 AFSACMV 133
>gi|41408996|ref|NP_961832.1| tRNA pseudouridine synthase B [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|54036503|sp|Q73VW3.1|TRUB_MYCPA RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|41397355|gb|AAS05215.1| TruB [Mycobacterium avium subsp. paratuberculosis K-10]
Length = 293
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 75/119 (63%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V G+ RR+ ++VGHAGTLDPMATG+L++ V +ATK++
Sbjct: 6 LVVVDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVLGVERATKILGLLTAAA 65
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K YS RLG+ATST DA+ V + H+ + I A RG+I QVP SAIKV
Sbjct: 66 KSYSATIRLGQATSTDDAEGDVARSVDARHLTSQAIEAAVGGLRGDIHQVPSTVSAIKV 124
>gi|255014842|ref|ZP_05286968.1| tRNA pseudouridine synthase B [Bacteroides sp. 2_1_7]
gi|256840988|ref|ZP_05546495.1| tRNA pseudouridine synthase B [Parabacteroides sp. D13]
gi|298375757|ref|ZP_06985713.1| tRNA pseudouridine synthase B [Bacteroides sp. 3_1_19]
gi|410102749|ref|ZP_11297674.1| tRNA pseudouridine synthase B [Parabacteroides sp. D25]
gi|256736831|gb|EEU50158.1| tRNA pseudouridine synthase B [Parabacteroides sp. D13]
gi|298266794|gb|EFI08451.1| tRNA pseudouridine synthase B [Bacteroides sp. 3_1_19]
gi|409237876|gb|EKN30671.1| tRNA pseudouridine synthase B [Parabacteroides sp. D25]
Length = 235
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 59/127 (46%), Positives = 79/127 (62%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ NKP WTSF + K R R +KVKK VGHAGTLDP+ATG++IVC G+ATK
Sbjct: 6 GEILYFNKPLTWTSFDLVNKFRYKLSRKLKVKKIKVGHAGTLDPLATGVMIVCTGRATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+D +Q K Y +LGE T ++D + + P EHI E + + +F G I Q+PP
Sbjct: 66 IDEFQYQTKEYIATLKLGETTPSFDLEKEIDAVYPTEHITRELVEEVLKTFVGTIQQIPP 125
Query: 423 MFSAIKV 429
+FSA KV
Sbjct: 126 VFSACKV 132
>gi|375142692|ref|YP_005003341.1| tRNA pseudouridine 55 synthase [Mycobacterium rhodesiae NBB3]
gi|359823313|gb|AEV76126.1| tRNA pseudouridine 55 synthase [Mycobacterium rhodesiae NBB3]
Length = 305
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 75/119 (63%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V G+ RR+ +KVGHAGTLDPMATG+L+V + +ATK++
Sbjct: 18 LVVVDKPAGMTSHDVVGRCRRIFGTRKVGHAGTLDPMATGVLVVGIERATKILGLLTATD 77
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ RLG+ TST DA+ V+ + I AAA+ RGEI Q+P SAIKV
Sbjct: 78 KSYAATIRLGQTTSTEDAEGEVLDTVSAAGVDQTQIESAAAALRGEIDQIPSTVSAIKV 136
>gi|417749489|ref|ZP_12397886.1| tRNA pseudouridine 55 synthase [Mycobacterium avium subsp.
paratuberculosis S397]
gi|336459008|gb|EGO37960.1| tRNA pseudouridine 55 synthase [Mycobacterium avium subsp.
paratuberculosis S397]
Length = 293
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 75/119 (63%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V G+ RR+ ++VGHAGTLDPMATG+L++ V +ATK++
Sbjct: 6 LVVVDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVLGVERATKILGLLTAAA 65
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K YS RLG+ATST DA+ V + H+ + I A RG+I QVP SAIKV
Sbjct: 66 KSYSATIRLGQATSTDDAEGDVARSVDARHLTSQAIEAAVGGLRGDIHQVPSTVSAIKV 124
>gi|317507391|ref|ZP_07965126.1| tRNA pseudouridine synthase B [Segniliparus rugosus ATCC BAA-974]
gi|316254339|gb|EFV13674.1| tRNA pseudouridine synthase B [Segniliparus rugosus ATCC BAA-974]
Length = 303
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 60/124 (48%), Positives = 78/124 (62%), Gaps = 1/124 (0%)
Query: 306 GPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDR 365
GP G +VLV+KP+G TS V + RR + +KVGHAGTLDPMATG+L++ +GKAT+L+ R
Sbjct: 7 GPHG-LVLVDKPQGMTSHDVVARARRCFRTRKVGHAGTLDPMATGVLVLGLGKATRLLGR 65
Query: 366 YQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFS 425
K Y G RLGE +S+ DAD ++ R + +R GEI QVPP S
Sbjct: 66 LTSDEKRYVGTIRLGERSSSDDADGEILGRASTAALALGQVRAGIERLTGEIAQVPPAVS 125
Query: 426 AIKV 429
AIKV
Sbjct: 126 AIKV 129
>gi|418052810|ref|ZP_12690888.1| tRNA pseudouridine synthase B [Mycobacterium rhodesiae JS60]
gi|353180110|gb|EHB45662.1| tRNA pseudouridine synthase B [Mycobacterium rhodesiae JS60]
Length = 295
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 74/119 (62%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V G+ RR+ +KVGHAGTLDPMATG+L+V + +ATK++
Sbjct: 8 IVVVDKPAGMTSHDVVGRCRRIFGTRKVGHAGTLDPMATGVLVVGIERATKILGLLTATS 67
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ RLG TST DA+ V+Q E + DE I+ A RG I Q P SA+KV
Sbjct: 68 KSYAATIRLGRTTSTEDAEGEVLQDISAERVTDEQIQAGVAPLRGTISQRPSAVSAVKV 126
>gi|150009010|ref|YP_001303753.1| tRNA pseudouridine synthase B [Parabacteroides distasonis ATCC
8503]
gi|189036548|sp|A6LEL7.1|TRUB_PARD8 RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|149937434|gb|ABR44131.1| tRNA pseudouridine synthase B [Parabacteroides distasonis ATCC
8503]
Length = 235
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/127 (46%), Positives = 79/127 (62%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ NKP WTSF + K R R +KVKK VGHAGTLDP+ATG++IVC G+ATK
Sbjct: 6 GEILYFNKPLTWTSFDLVNKFRYKLSRKLKVKKIKVGHAGTLDPLATGVMIVCTGRATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+D +Q K Y +LGE T ++D + + P EHI E + + +F G I Q+PP
Sbjct: 66 IDEFQYQTKEYIATLKLGETTPSFDLEKEIDAVYPTEHITRELVEEVLKTFVGTIQQIPP 125
Query: 423 MFSAIKV 429
+FSA KV
Sbjct: 126 VFSACKV 132
>gi|333377155|ref|ZP_08468891.1| tRNA pseudouridine synthase B [Dysgonomonas mossii DSM 22836]
gi|332886368|gb|EGK06612.1| tRNA pseudouridine synthase B [Dysgonomonas mossii DSM 22836]
Length = 231
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/136 (45%), Positives = 84/136 (61%), Gaps = 9/136 (6%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ +NKP WTSFT+ KLR R + +KK VGHAGTLDP+ATG++IVC GK TKL
Sbjct: 6 GEVLYINKPLNWTSFTLVRKLRNKLCRKLGIKKLKVGHAGTLDPLATGVMIVCTGKKTKL 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y ++GE T ++D ++ V P EHI E + F GEI QVPP
Sbjct: 66 IESFQYQTKEYIATIKIGETTPSFDLETAVDGVFPVEHITKELVEAKLKDFIGEIEQVPP 125
Query: 423 MFSAIKV---RVFHFS 435
+SA KV R + F+
Sbjct: 126 TYSACKVDGKRAYEFA 141
>gi|372209507|ref|ZP_09497309.1| tRNA pseudouridine synthase B [Flavobacteriaceae bacterium S85]
Length = 234
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 76/126 (60%), Gaps = 6/126 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK------KVGHAGTLDPMATGLLIVCVGKATKL 362
G ++L++KP WTSF V KLR +K KVGHAGTLDP+ATGLLI+C GK TK
Sbjct: 10 GQVLLIDKPLHWTSFQVVNKLRWAIKQHYGIKNIKVGHAGTLDPLATGLLILCTGKFTKK 69
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ YQ K Y+G LG T ++D ++ + Q HI + I F GEI Q PP
Sbjct: 70 IETYQAQHKEYTGTITLGATTPSYDLETDIDQTYSINHITEALIHATTKKFVGEIDQKPP 129
Query: 423 MFSAIK 428
+FSAIK
Sbjct: 130 IFSAIK 135
>gi|430750266|ref|YP_007213174.1| tRNA pseudouridine 55 synthase [Thermobacillus composti KWC4]
gi|430734231|gb|AGA58176.1| tRNA pseudouridine 55 synthase [Thermobacillus composti KWC4]
Length = 315
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 79/119 (66%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ V KP GWTS V K+RR +++++GHAGTLDP TG+L +C+G+AT++V+ Q +
Sbjct: 19 ILAVWKPAGWTSHDVVAKVRRWTRMRRIGHAGTLDPQVTGVLPLCLGRATRVVEYMQELP 78
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y V +LG AT T D V+ H+ + +R+A A F GEI QVPPM+SA+KV
Sbjct: 79 KAYETVMQLGVATDTEDLTGTVLDTSDASHVTEAMLREALARFIGEIEQVPPMYSAVKV 137
>gi|392415917|ref|YP_006452522.1| tRNA pseudouridine synthase B [Mycobacterium chubuense NBB4]
gi|390615693|gb|AFM16843.1| tRNA pseudouridine synthase B [Mycobacterium chubuense NBB4]
Length = 296
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 76/119 (63%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V G+ RRL +KVGHAGTLDPMATG+L+V + +ATK++
Sbjct: 8 LVIVDKPAGMTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLVVGIERATKILGLLTATD 67
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ RLG+ T+T DA+ ++Q + D+ I A A RG+I Q+P SAIKV
Sbjct: 68 KAYAATIRLGQTTTTEDAEGELVQSVSAAGVTDDRIEAAVAPLRGDIRQIPSAVSAIKV 126
>gi|182414632|ref|YP_001819698.1| tRNA pseudouridine synthase B [Opitutus terrae PB90-1]
gi|259550528|sp|B1ZX46.1|TRUB_OPITP RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|177841846|gb|ACB76098.1| tRNA pseudouridine synthase B [Opitutus terrae PB90-1]
Length = 241
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 76/119 (63%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++LV+KP TS V +LRR + +K++GHAGTLDPMATGL+I+ +GKAT + +
Sbjct: 11 VLLVDKPTAHTSHDVVARLRRKLNMKRIGHAGTLDPMATGLMILLIGKATTISQYLTSLD 70
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG+ T + DAD V+ P + +IR A A F G+ +Q PPM+SAIKV
Sbjct: 71 KEYEGTIELGKVTDSQDADGEVLSTLPVPPFTEAEIRAAMAGFMGDQYQTPPMYSAIKV 129
>gi|383823846|ref|ZP_09979034.1| tRNA pseudouridine synthase B [Mycobacterium xenopi RIVM700367]
gi|383338282|gb|EID16647.1| tRNA pseudouridine synthase B [Mycobacterium xenopi RIVM700367]
Length = 292
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 76/119 (63%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP TS V + RR+ +KVGHAGTLDPMATG+L++ + +ATK++ G
Sbjct: 5 IVVVDKPAAMTSHDVVARCRRIFATRKVGHAGTLDPMATGVLVIGIERATKILGLLSGAS 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ RLG+ATST D++ ++Q+ EH+ D I A GEI QVP SA+K+
Sbjct: 65 KSYAATIRLGQATSTDDSEGELLQQVSAEHLSDAAIAAAMGRLCGEISQVPSAVSAVKI 123
>gi|423330244|ref|ZP_17308028.1| tRNA pseudouridine synthase B [Parabacteroides distasonis
CL03T12C09]
gi|409231860|gb|EKN24708.1| tRNA pseudouridine synthase B [Parabacteroides distasonis
CL03T12C09]
Length = 235
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 79/127 (62%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ NKP WTSF + K R R +KVKK VGHAGTLDP+ATG++IVC G+ATK
Sbjct: 6 GEILYFNKPLTWTSFDLVNKFRYKLSRKLKVKKIKVGHAGTLDPLATGVMIVCTGRATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+D +Q K Y +LGE T ++D + + P EHI E + + +F G I Q+PP
Sbjct: 66 IDEFQYQTKEYIATLKLGETTPSFDLEKEIDAVYPTEHITRELVEEVLKTFVGTIQQIPP 125
Query: 423 MFSAIKV 429
+FSA K+
Sbjct: 126 VFSACKI 132
>gi|262383901|ref|ZP_06077037.1| tRNA pseudouridine synthase B [Bacteroides sp. 2_1_33B]
gi|301312061|ref|ZP_07217983.1| tRNA pseudouridine synthase B [Bacteroides sp. 20_3]
gi|423339384|ref|ZP_17317125.1| tRNA pseudouridine synthase B [Parabacteroides distasonis
CL09T03C24]
gi|262294799|gb|EEY82731.1| tRNA pseudouridine synthase B [Bacteroides sp. 2_1_33B]
gi|300830163|gb|EFK60811.1| tRNA pseudouridine synthase B [Bacteroides sp. 20_3]
gi|409230765|gb|EKN23626.1| tRNA pseudouridine synthase B [Parabacteroides distasonis
CL09T03C24]
Length = 235
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 79/127 (62%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ NKP WTSF + K R R +KVKK VGHAGTLDP+ATG++IVC G+ATK
Sbjct: 6 GEILYFNKPLTWTSFDLVNKFRYKLSRKLKVKKIKVGHAGTLDPLATGVMIVCTGRATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+D +Q K Y +LGE T ++D + + P EHI E + + +F G I Q+PP
Sbjct: 66 IDEFQYQTKEYIATLKLGETTPSFDLEKEIDAVYPTEHITRELVEEVLKTFVGTIQQIPP 125
Query: 423 MFSAIKV 429
+FSA K+
Sbjct: 126 VFSACKI 132
>gi|260889006|ref|ZP_05900269.1| tRNA pseudouridine synthase B [Leptotrichia hofstadii F0254]
gi|260861066|gb|EEX75566.1| tRNA pseudouridine synthase B [Leptotrichia hofstadii F0254]
Length = 358
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/128 (47%), Positives = 81/128 (63%), Gaps = 5/128 (3%)
Query: 303 TWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKL 362
T DG ++L+NK KG +SF L++++K KKVGHAGTLDPMA GL+IV + +ATK
Sbjct: 6 TKDG----LILLNKSKGVSSFGAINHLKKVIKAKKVGHAGTLDPMAEGLMIVMINEATKF 61
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWE-HIKDEDIRKAAASFRGEIWQVP 421
D K Y LG T T+D + VI + E +I D +I KA SF+G+I QVP
Sbjct: 62 SDNLMKKDKEYYVEMELGYKTGTYDLEGTVIAKYDSEINISDSEIIKAVNSFKGKIKQVP 121
Query: 422 PMFSAIKV 429
PM+SAIK+
Sbjct: 122 PMYSAIKI 129
>gi|290770195|gb|ADD61953.1| putative protein [uncultured organism]
Length = 304
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/116 (50%), Positives = 81/116 (69%), Gaps = 1/116 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
VNKP+GWTSF V KLR ++++K++GHAGTLDPMATG+L V VG+ATK D K Y
Sbjct: 16 VNKPEGWTSFDVIAKLRGVLRIKRLGHAGTLDPMATGVLPVFVGRATKACDIIPDRRKIY 75
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
+ F+LG +T T D+ V++ + + +++ KA + F G+I QVPPM+SAIKV
Sbjct: 76 TAGFQLGVSTDTLDSTGKVLETSD-KSVSFQELEKAKSGFVGDIMQVPPMYSAIKV 130
>gi|120403320|ref|YP_953149.1| tRNA pseudouridine synthase B [Mycobacterium vanbaalenii PYR-1]
gi|119956138|gb|ABM13143.1| tRNA pseudouridine synthase B [Mycobacterium vanbaalenii PYR-1]
Length = 302
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/123 (46%), Positives = 75/123 (60%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P +V+V+KP G TS V G+ RRL +KVGHAGTLDPMATG+L+V + +ATK++
Sbjct: 11 PAPGLVVVDKPGGMTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLVVGIERATKILGLL 70
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
K Y+ RLG+ TST DA+ V+Q + D I A A RG I Q+P SA
Sbjct: 71 TATDKSYAATIRLGQTTSTEDAEGEVLQSVSAAEVTDAQIEAAIAPLRGPIDQIPSAVSA 130
Query: 427 IKV 429
IK+
Sbjct: 131 IKI 133
>gi|423317400|ref|ZP_17295305.1| tRNA pseudouridine synthase B [Bergeyella zoohelcum ATCC 43767]
gi|405581286|gb|EKB55321.1| tRNA pseudouridine synthase B [Bergeyella zoohelcum ATCC 43767]
Length = 232
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 81/127 (63%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGK----LRRLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++LV+KP WTSF K L+R K+KK VGHAGTLDP ATGLLIVC+GKATK
Sbjct: 9 GQILLVDKPIDWTSFQAVNKIKFKLKREYKLKKIKVGHAGTLDPKATGLLIVCIGKATKQ 68
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+ Q K Y +LG T+++D + P I +P + I ++ + + F G+I Q+PP
Sbjct: 69 ISEIQDAPKEYVAEIKLGVQTTSYDTEKPEILHQPIDEITEDKVTQTLEKFMGDIMQIPP 128
Query: 423 MFSAIKV 429
+FSA+K+
Sbjct: 129 VFSALKI 135
>gi|261407933|ref|YP_003244174.1| tRNA pseudouridine synthase B [Paenibacillus sp. Y412MC10]
gi|261284396|gb|ACX66367.1| tRNA pseudouridine synthase B [Paenibacillus sp. Y412MC10]
Length = 303
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 80/119 (67%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ V+KP GWTS V K+R +V++K++GH GTLDP TG+L +C+G+AT++V+ Q +
Sbjct: 7 ILAVHKPAGWTSHDVVAKVRGMVRLKRIGHTGTLDPEVTGVLPLCLGRATRVVEYLQELP 66
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y V RLG +T T D V++ + ++ +A SFRG+I QVPPM+SA+K+
Sbjct: 67 KEYHAVLRLGYSTDTEDITGNVVETADEVRVTRDEALEALQSFRGQISQVPPMYSAVKI 125
>gi|332653580|ref|ZP_08419325.1| tRNA pseudouridine synthase B [Ruminococcaceae bacterium D16]
gi|332518726|gb|EGJ48329.1| tRNA pseudouridine synthase B [Ruminococcaceae bacterium D16]
Length = 290
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/119 (48%), Positives = 77/119 (64%), Gaps = 1/119 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++++KP+ WTS VC KLR L K++GHAGTLDPMATG+L V VG+AT+ V+
Sbjct: 5 IIVIDKPQDWTSMDVCAKLRGLFHEKRIGHAGTLDPMATGVLPVFVGRATRAVEFASEGD 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y RLG T T D V++ P + E++ A A FRGEI Q+PPM+SAIKV
Sbjct: 65 KEYLAGLRLGTVTDTQDTSGRVLEEHPVS-VTREELEAALAPFRGEIQQLPPMYSAIKV 122
>gi|332291904|ref|YP_004430513.1| tRNA pseudouridine synthase B [Krokinobacter sp. 4H-3-7-5]
gi|332169990|gb|AEE19245.1| tRNA pseudouridine synthase B [Krokinobacter sp. 4H-3-7-5]
Length = 235
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/136 (44%), Positives = 85/136 (62%), Gaps = 9/136 (6%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLV------KVKKVGHAGTLDPMATGLLIVCVGKATKL 362
G +++ +KP WTSF + K+R L+ K KVGHAGTLDP+ATGL+I+C GK TK
Sbjct: 10 GQVLIFDKPLEWTSFQLVNKVRWLIRKNLNIKKIKVGHAGTLDPLATGLMIICTGKFTKR 69
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+ + G K Y+G LG T ++D ++ V Q EHI DEDI A +++G I Q PP
Sbjct: 70 LHEFVGQEKEYTGTIVLGGTTPSYDLETEVDQTFSTEHITDEDIYAFAKAYQGNIMQRPP 129
Query: 423 MFSAIK---VRVFHFS 435
+FSA+K R++ F+
Sbjct: 130 VFSALKKEGKRLYEFA 145
>gi|284108779|ref|ZP_06386444.1| tRNA pseudouridine synthase B [Candidatus Poribacteria sp. WGA-A3]
gi|283829853|gb|EFC34144.1| tRNA pseudouridine synthase B [Candidatus Poribacteria sp. WGA-A3]
Length = 325
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/140 (45%), Positives = 85/140 (60%), Gaps = 4/140 (2%)
Query: 293 IVSRSTELPP---TWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMAT 349
+ R LPP T P G + V+KP GWTS V K+RRL++V KVGHAGTLDP AT
Sbjct: 1 MAERLDRLPPGHMTPAVPHGVLN-VSKPAGWTSHDVVAKVRRLLQVPKVGHAGTLDPAAT 59
Query: 350 GLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKA 409
G+L V +GK T+L K Y V RLG+ T+T DA +++ P ++ E + +A
Sbjct: 60 GVLPVLLGKGTRLSAFLLHWDKEYEAVLRLGQETTTQDATGAIVRDCPVPELRPETVHEA 119
Query: 410 AASFRGEIWQVPPMFSAIKV 429
A F GE QVPPM+SA+K+
Sbjct: 120 VAQFHGEQQQVPPMYSAVKI 139
>gi|330997202|ref|ZP_08321055.1| tRNA pseudouridine synthase B [Paraprevotella xylaniphila YIT
11841]
gi|329570997|gb|EGG52704.1| tRNA pseudouridine synthase B [Paraprevotella xylaniphila YIT
11841]
Length = 235
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 76/127 (59%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRL------VKVKKVGHAGTLDPMATGLLIVCVGKATKL 362
G ++ +KP WTSF + K+R L VK KVGHAGTLDP+ATG+L+VC GKATK
Sbjct: 6 GEILAFDKPYEWTSFGLVAKVRYLLCKRLGVKKLKVGHAGTLDPLATGVLLVCTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ Q K Y RLG T ++D + PV P EHI E + + F G I QVPP
Sbjct: 66 IEELQAHTKEYVATLRLGATTPSFDLEKPVDAEYPTEHITREMVEETLVRFVGTIEQVPP 125
Query: 423 MFSAIKV 429
+FSA KV
Sbjct: 126 VFSACKV 132
>gi|313203717|ref|YP_004042374.1| tRNA pseudouridine synthase b [Paludibacter propionicigenes WB4]
gi|312443033|gb|ADQ79389.1| tRNA pseudouridine synthase B [Paludibacter propionicigenes WB4]
Length = 234
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 81/127 (63%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ V KP WTSF + K+R + +K+KK VGHAGTLDP+ATG++I+C GK+TKL
Sbjct: 6 GEVLHVAKPLTWTSFNLVSKVRWKLQKTLKMKKLKVGHAGTLDPLATGVMIICTGKSTKL 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y LG T ++D + PV P EHI + + F GEIWQVPP
Sbjct: 66 IESFQYQTKEYIATLELGATTPSFDLELPVDATFPTEHITRALVDEVIPRFLGEIWQVPP 125
Query: 423 MFSAIKV 429
++SA+KV
Sbjct: 126 VYSAVKV 132
>gi|257453572|ref|ZP_05618862.1| tRNA pseudouridine synthase B [Enhydrobacter aerosaccus SK60]
gi|257449030|gb|EEV23983.1| tRNA pseudouridine synthase B [Enhydrobacter aerosaccus SK60]
Length = 316
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/133 (42%), Positives = 77/133 (57%), Gaps = 5/133 (3%)
Query: 301 PPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKV-----KKVGHAGTLDPMATGLLIVC 355
P T ++L++KP+G TS V K++ L+K KK GH GTLDPMATGLL +C
Sbjct: 5 PKTAKSIVSGVLLIDKPQGMTSQQVVSKVKYLLKSDVHDSKKAGHTGTLDPMATGLLPIC 64
Query: 356 VGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRG 415
+G+ATK IK Y + +LGE T T DA+ +I P H+ ++ F G
Sbjct: 65 LGEATKFSHYQLDAIKSYHAIIKLGEQTDTGDAEGEIIATSPVPHVTQAMLQSVTEQFLG 124
Query: 416 EIWQVPPMFSAIK 428
EI QVPPM+SA+K
Sbjct: 125 EIMQVPPMYSALK 137
>gi|325102998|ref|YP_004272652.1| tRNA pseudouridine synthase B [Pedobacter saltans DSM 12145]
gi|324971846|gb|ADY50830.1| tRNA pseudouridine synthase B [Pedobacter saltans DSM 12145]
Length = 243
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 80/129 (62%), Gaps = 2/129 (1%)
Query: 302 PTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVK--VKKVGHAGTLDPMATGLLIVCVGKA 359
PT++ G ++L+NKP WTSF + GKLR +K KVGHAGTLDP+ATGLLI+C GK
Sbjct: 12 PTFNFTQGEVLLINKPYKWTSFDIVGKLRNSLKPLKLKVGHAGTLDPLATGLLIICTGKL 71
Query: 360 TKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQ 419
TK +D +Q K Y+G LG T ++D ++ Q I + I++ F G+I Q
Sbjct: 72 TKQIDSFQAEEKEYTGTITLGSTTPSYDLETEPDQFFDISGISENQIKENTKHFIGDIEQ 131
Query: 420 VPPMFSAIK 428
PP+ SA+K
Sbjct: 132 FPPIHSALK 140
>gi|297530559|ref|YP_003671834.1| tRNA pseudouridine synthase B [Geobacillus sp. C56-T3]
gi|297253811|gb|ADI27257.1| tRNA pseudouridine synthase B [Geobacillus sp. C56-T3]
Length = 302
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/120 (47%), Positives = 75/120 (62%), Gaps = 1/120 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L+NKPKG TS K+RRL+ VKK GH GTLDP +G+L +C+GKAT++ + G
Sbjct: 4 VLLLNKPKGMTSHDCVAKVRRLLGVKKAGHTGTLDPNVSGVLPICLGKATRIAEFLTGTT 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG AT+T DAD +I P + I +I S GEI Q PPM+SA+KV
Sbjct: 64 KAYEGKVTLGAATTTEDADGDIIAARPVDRPIARAEIEAVFDSLTGEIEQTPPMYSAVKV 123
>gi|424864023|ref|ZP_18287931.1| tRNA pseudouridine synthase B [SAR86 cluster bacterium SAR86B]
gi|400759954|gb|EJP74131.1| tRNA pseudouridine synthase B [SAR86 cluster bacterium SAR86B]
Length = 242
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 84/129 (65%), Gaps = 5/129 (3%)
Query: 302 PTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATK 361
PT++G ++LV+KP G TS + +LRR +K+KK+GHAGTLDP+ATGL+I+ +GKATK
Sbjct: 6 PTFEG----ILLVDKPSGITSHDIVDRLRRKLKMKKIGHAGTLDPLATGLMIMLIGKATK 61
Query: 362 LVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPW-EHIKDEDIRKAAASFRGEIWQV 420
+ + K Y G F LG T + D+D +++R E + ++ IR F G+ +Q
Sbjct: 62 VSQFLISLDKAYEGTFELGVETDSQDSDGEIVERRDLPEDLSEDMIRNEMKQFLGDQYQT 121
Query: 421 PPMFSAIKV 429
PPMFSA K+
Sbjct: 122 PPMFSAKKI 130
>gi|145224608|ref|YP_001135286.1| tRNA pseudouridine synthase B [Mycobacterium gilvum PYR-GCK]
gi|145217094|gb|ABP46498.1| tRNA pseudouridine synthase B [Mycobacterium gilvum PYR-GCK]
Length = 294
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 75/119 (63%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V G+ RRL +KVGHAGTLDPMATG+L++ + +ATK++
Sbjct: 7 LVVVDKPGGMTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLVIGIERATKILGLLTATD 66
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ RLG+ TST D + ++ + + DE I +A A RG I QVP SAIK+
Sbjct: 67 KSYTATLRLGQTTSTEDTEGELLHQVSAAQVTDEQIERAIAPLRGAIEQVPSAVSAIKI 125
>gi|374608294|ref|ZP_09681093.1| tRNA pseudouridine synthase B [Mycobacterium tusciae JS617]
gi|373553826|gb|EHP80413.1| tRNA pseudouridine synthase B [Mycobacterium tusciae JS617]
Length = 305
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 77/119 (64%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V G+ R++ +KVGHAGTLDPMATG+L+V + +ATK++
Sbjct: 18 LVVVDKPSGMTSHDVVGRCRQIFGTRKVGHAGTLDPMATGVLVVGIERATKILGMLTATD 77
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ RLG+ TST DA+ V+Q + + I ++ A+ RGEI QVP SAIKV
Sbjct: 78 KSYAATIRLGQTTSTEDAEGEVLQTVSAAGVDEAQIEESVAALRGEIDQVPSAVSAIKV 136
>gi|227431852|ref|ZP_03913876.1| pseudouridylate synthase [Leuconostoc mesenteroides subsp. cremoris
ATCC 19254]
gi|227352394|gb|EEJ42596.1| pseudouridylate synthase [Leuconostoc mesenteroides subsp. cremoris
ATCC 19254]
Length = 302
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 83/129 (64%), Gaps = 4/129 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++++NKP+G TSF V ++RR++ KKVGHAGTLDP G+L+V +GKATKL+D Q +
Sbjct: 10 LLVINKPRGMTSFDVVSRVRRIIGQKKVGHAGTLDPNVDGVLVVALGKATKLIDELQTRL 69
Query: 371 KGYSGVFRLGEATSTWDADSPVI-QREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T T D D ++ Q + D+ I +A GEI Q PPM+SA+KV
Sbjct: 70 KSYIGEITLGFSTETEDLDGEIVDQLDIVTPFSDQKIDQAIQQLNGEITQRPPMYSAVKV 129
Query: 430 ---RVFHFS 435
R++ ++
Sbjct: 130 NGKRLYEYA 138
>gi|386852144|ref|YP_006270157.1| tRNA pseudouridine synthase B [Actinoplanes sp. SE50/110]
gi|359839648|gb|AEV88089.1| tRNA pseudouridine synthase B [Actinoplanes sp. SE50/110]
Length = 288
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/117 (48%), Positives = 73/117 (62%)
Query: 313 LVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKG 372
+V+KP G TS V ++RRL K ++VGH GTLDPMATG+LI+ V +AT+L+ G K
Sbjct: 1 MVDKPSGMTSHDVVARIRRLAKTRRVGHGGTLDPMATGVLIIGVNRATRLLTYVIGAEKS 60
Query: 373 YSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
Y+ RLGEAT T DA+ V P + D IR A+ GEI QVP SAIK+
Sbjct: 61 YAATIRLGEATVTDDAEGEVTATVPVAGVADAAIRAGLAAQVGEIDQVPSAVSAIKI 117
>gi|227488662|ref|ZP_03918978.1| tRNA pseudouridine synthase B [Corynebacterium glucuronolyticum
ATCC 51867]
gi|227091375|gb|EEI26687.1| tRNA pseudouridine synthase B [Corynebacterium glucuronolyticum
ATCC 51867]
Length = 295
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/122 (45%), Positives = 72/122 (59%)
Query: 308 FGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQ 367
G +VLV+KP+G TS +V G +RR KKVGHAGTLDPMATGLL+V V + TK +
Sbjct: 7 LGGLVLVDKPRGMTSHSVVGAIRRYFGTKKVGHAGTLDPMATGLLVVGVERGTKFLAHLV 66
Query: 368 GMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAI 427
K Y RLG+ T+T DAD + + H+ D DI + G+I Q P SAI
Sbjct: 67 AETKTYEATIRLGQETTTEDADGEITREVDASHVTDADIAREVEKLTGDIMQRPSSVSAI 126
Query: 428 KV 429
K+
Sbjct: 127 KI 128
>gi|414887528|tpg|DAA63542.1| TPA: hypothetical protein ZEAMMB73_318559 [Zea mays]
Length = 306
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/74 (71%), Positives = 62/74 (83%), Gaps = 2/74 (2%)
Query: 323 FTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEA 382
F C +L + + V +VGHAGTLDPMATGLLIVCVGKATK+ YQGM+KGYSGVFRLGEA
Sbjct: 189 FMKCERLSQQLDVSQVGHAGTLDPMATGLLIVCVGKATKIY--YQGMVKGYSGVFRLGEA 246
Query: 383 TSTWDADSPVIQRE 396
TSTWD DSPV++ +
Sbjct: 247 TSTWDVDSPVVEEQ 260
>gi|317058464|ref|ZP_07922949.1| tRNA pseudouridine synthase B [Fusobacterium sp. 3_1_5R]
gi|313684140|gb|EFS20975.1| tRNA pseudouridine synthase B [Fusobacterium sp. 3_1_5R]
Length = 285
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 80/120 (66%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++++NK KG +SF V LR+L++ +K+GH GTLDP+ATG+LI+C+GKAT+L +
Sbjct: 4 IIIINKEKGMSSFDVIRSLRKLLQERKIGHTGTLDPLATGVLILCLGKATRLAQEIEAQE 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVR 430
K Y G T T+D + ++ P + +K E+ + + ++G+I Q+PPM+SAIK++
Sbjct: 64 KVYEAEMEFGYQTDTYDLEGEIVATSPKKEVKREEFEEVLSHWKGKISQIPPMYSAIKIQ 123
>gi|332881519|ref|ZP_08449168.1| tRNA pseudouridine synthase B [Capnocytophaga sp. oral taxon 329
str. F0087]
gi|357045595|ref|ZP_09107230.1| tRNA pseudouridine synthase B [Paraprevotella clara YIT 11840]
gi|332680517|gb|EGJ53465.1| tRNA pseudouridine synthase B [Capnocytophaga sp. oral taxon 329
str. F0087]
gi|355531457|gb|EHH00855.1| tRNA pseudouridine synthase B [Paraprevotella clara YIT 11840]
Length = 235
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 76/127 (59%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRL------VKVKKVGHAGTLDPMATGLLIVCVGKATKL 362
G ++ +KP WTSF + K+R L VK KVGHAGTLDP+ATG+L+VC GKATK
Sbjct: 6 GEILAFDKPYEWTSFGLVAKVRYLLCKRLGVKKLKVGHAGTLDPLATGVLLVCTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ Q K Y RLG T ++D + PV P EHI E + + F G I QVPP
Sbjct: 66 IEELQAHTKEYVATLRLGATTPSFDLEKPVDAEYPTEHITREMVEETLNRFVGTIEQVPP 125
Query: 423 MFSAIKV 429
+FSA KV
Sbjct: 126 VFSACKV 132
>gi|395802203|ref|ZP_10481456.1| tRNA pseudouridine synthase B [Flavobacterium sp. F52]
gi|395435444|gb|EJG01385.1| tRNA pseudouridine synthase B [Flavobacterium sp. F52]
Length = 229
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 57/134 (42%), Positives = 83/134 (61%), Gaps = 10/134 (7%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK-------KVGHAGTLDPMATGLLIVCVGKATK 361
G ++L++KP W+SF KL+ L+ K K+GHAGTLDP+ATGLL++C GK TK
Sbjct: 9 GQVLLIDKPLKWSSFQAVNKLKYLLINKVGLPKKFKIGHAGTLDPLATGLLLICTGKFTK 68
Query: 362 LVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVP 421
+ Q K Y+G F +G T ++D ++ + Q P +HI ++ I + F GEI Q P
Sbjct: 69 KISELQDQAKEYTGTFYIGATTPSYDLETEIDQTFPTDHINEDLIHETVKQFLGEIDQKP 128
Query: 422 PMFSAIK---VRVF 432
P+FSAIK VR++
Sbjct: 129 PIFSAIKKDGVRLY 142
>gi|410866703|ref|YP_006981314.1| tRNA pseudouridine synthase B [Propionibacterium acidipropionici
ATCC 4875]
gi|410823344|gb|AFV89959.1| tRNA pseudouridine synthase B [Propionibacterium acidipropionici
ATCC 4875]
Length = 295
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 57/119 (47%), Positives = 77/119 (64%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+KP+GWTS V ++RRL +KVGHAGTLDPMATG+L+V VG+AT+L+
Sbjct: 8 LLIVDKPQGWTSHQVVARVRRLRGTRKVGHAGTLDPMATGVLVVGVGRATRLLGHLALHD 67
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ RLG T T DA+ V+ E + + I +A A RG+I QVP SAIKV
Sbjct: 68 KDYTATIRLGVTTVTDDAEGDVLAAEDASGLTEAGIGEAMAPLRGDILQVPTAVSAIKV 126
>gi|227543267|ref|ZP_03973316.1| tRNA pseudouridine synthase B [Corynebacterium glucuronolyticum
ATCC 51866]
gi|227180954|gb|EEI61926.1| tRNA pseudouridine synthase B [Corynebacterium glucuronolyticum
ATCC 51866]
Length = 295
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 56/122 (45%), Positives = 72/122 (59%)
Query: 308 FGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQ 367
G +VLV+KP+G TS +V G +RR KKVGHAGTLDPMATGLL+V V + TK +
Sbjct: 7 LGGLVLVDKPRGMTSHSVVGAIRRYFGTKKVGHAGTLDPMATGLLVVGVERGTKFLAHLV 66
Query: 368 GMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAI 427
K Y RLG+ T+T DAD + + H+ D DI + G+I Q P SAI
Sbjct: 67 AETKTYEATIRLGQETTTEDADGEITREVDASHVTDADIAREVEKLTGDIMQRPSSVSAI 126
Query: 428 KV 429
K+
Sbjct: 127 KI 128
>gi|423220641|ref|ZP_17207136.1| tRNA pseudouridine synthase B [Bacteroides caccae CL03T12C61]
gi|392623718|gb|EIY17821.1| tRNA pseudouridine synthase B [Bacteroides caccae CL03T12C61]
Length = 240
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 75/127 (59%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ NKP GWTSF V G +R R + VKK VGHAGTLDP+ATG++IVC GKATK
Sbjct: 6 GEVLFFNKPLGWTSFKVVGHVRYHICRQIGVKKLKVGHAGTLDPLATGVMIVCTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y RLG T ++D + + P HI E + K F G I QVPP
Sbjct: 66 IEEFQYHTKEYVATLRLGATTPSYDLEHEIDATYPTGHITRELVEKVLTHFIGTIEQVPP 125
Query: 423 MFSAIKV 429
FSA V
Sbjct: 126 AFSACMV 132
>gi|213964398|ref|ZP_03392598.1| tRNA pseudouridine synthase B [Corynebacterium amycolatum SK46]
gi|213952591|gb|EEB63973.1| tRNA pseudouridine synthase B [Corynebacterium amycolatum SK46]
Length = 328
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 74/119 (62%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP+GWTS V GKLRR+ + KKVGH+GTLDPMATG+L++ +G+ T+ +
Sbjct: 12 IVIVDKPQGWTSHDVVGKLRRIFRTKKVGHSGTLDPMATGVLVLGIGRGTRFLPHVHADT 71
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y RLG AT T DA+ ++ + DE IR+ F G I Q P SA+K+
Sbjct: 72 KSYRATIRLGAATLTDDAEGELLSESSAASVTDEMIREKITDFTGTIMQKPAAVSAVKI 130
>gi|313885279|ref|ZP_07819030.1| tRNA pseudouridine synthase B [Eremococcus coleocola
ACS-139-V-Col8]
gi|312619385|gb|EFR30823.1| tRNA pseudouridine synthase B [Eremococcus coleocola
ACS-139-V-Col8]
Length = 305
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 57/118 (48%), Positives = 77/118 (65%), Gaps = 1/118 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+NKPKG TS V K R+L+K+KK+GH GTLDP G+L++C+GKATKLV+ K Y
Sbjct: 9 INKPKGMTSHDVVFKARKLLKMKKIGHTGTLDPDVEGVLVLCLGKATKLVNYLMESPKAY 68
Query: 374 SGVFRLGEATSTWDADSPVIQREP-WEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVR 430
G LG+AT T DA VI +P + D + +A A+ GEI Q+PP +SA+KV+
Sbjct: 69 QGGIFLGQATETEDASGAVIASQPVLNPLTDAQVDQAMAAMTGEIQQIPPYYSAVKVK 126
>gi|346224777|ref|ZP_08845919.1| tRNA pseudouridine synthase B [Anaerophaga thermohalophila DSM
12881]
Length = 265
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 59/127 (46%), Positives = 80/127 (62%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR-RL-----VKVKKVGHAGTLDPMATGLLIVCVGKATKL 362
G + L++KP WTSF V K+R RL +K KVGHAGTLDP+ATGL+IVC GKATK
Sbjct: 34 GRIFLIDKPYRWTSFDVVKKIRSRLQHGLKIKKIKVGHAGTLDPLATGLVIVCTGKATKN 93
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+DR K Y + G T ++D ++ V + P+ HI+ ++I A F GE Q+PP
Sbjct: 94 IDRLMAEEKHYFAKVKFGATTPSFDLETEVDREYPYAHIRKDEIETALNRFLGEQQQIPP 153
Query: 423 MFSAIKV 429
FSAI++
Sbjct: 154 GFSAIRI 160
>gi|261419466|ref|YP_003253148.1| tRNA pseudouridine synthase B [Geobacillus sp. Y412MC61]
gi|319766281|ref|YP_004131782.1| tRNA pseudouridine synthase B [Geobacillus sp. Y412MC52]
gi|448237422|ref|YP_007401480.1| tRNA pseudouridine synthase B [Geobacillus sp. GHH01]
gi|261375923|gb|ACX78666.1| tRNA pseudouridine synthase B [Geobacillus sp. Y412MC61]
gi|317111147|gb|ADU93639.1| tRNA pseudouridine synthase B [Geobacillus sp. Y412MC52]
gi|445206264|gb|AGE21729.1| tRNA pseudouridine synthase B [Geobacillus sp. GHH01]
Length = 302
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 57/120 (47%), Positives = 75/120 (62%), Gaps = 1/120 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L+NKPKG TS K+RRL+ VKK GH GTLDP +G+L +C+GKAT++ + G
Sbjct: 4 VLLLNKPKGMTSHDCVAKVRRLLGVKKAGHTGTLDPNVSGVLPICLGKATRIAEFLTGTT 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG AT+T DAD +I P + I +I S GEI Q PPM+SA+KV
Sbjct: 64 KTYEGKVTLGAATTTEDADGDIIAARPVDRPIARAEIEAVFDSLTGEIEQTPPMYSAVKV 123
>gi|163839415|ref|YP_001623820.1| tRNA pseudouridine synthase B [Renibacterium salmoninarum ATCC
33209]
gi|162952891|gb|ABY22406.1| tRNA pseudouridine synthase B [Renibacterium salmoninarum ATCC
33209]
Length = 212
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 58/119 (48%), Positives = 75/119 (63%), Gaps = 14/119 (11%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP+GWTS V K+RRL +KVGHAGTLDPMATG+L++ + KATKL+ G
Sbjct: 14 LVIVDKPQGWTSHDVVAKMRRLAGTRKVGHAGTLDPMATGVLVIGINKATKLLTYIVGTS 73
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y RLG++T T DA+ +IR+A A+ GEI QVP SAIKV
Sbjct: 74 KTYDATIRLGQSTITDDAEG--------------EIRRAVAALTGEILQVPSSVSAIKV 118
>gi|408370651|ref|ZP_11168426.1| tRNA pseudouridine synthase B [Galbibacter sp. ck-I2-15]
gi|407743888|gb|EKF55460.1| tRNA pseudouridine synthase B [Galbibacter sp. ck-I2-15]
Length = 229
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 58/136 (42%), Positives = 86/136 (63%), Gaps = 9/136 (6%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR------RLVKVKKVGHAGTLDPMATGLLIVCVGKATKL 362
G +L++KP GW+SF K++ +K KVGHAGTLDP+ATGLL++C GK+TK
Sbjct: 9 GQTLLIDKPLGWSSFQAVNKIKWDIKKAYKLKKIKVGHAGTLDPLATGLLLICTGKSTKK 68
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+ QG +K Y+G LG T ++D ++ + Q +HI +E I+ A SF G+I Q PP
Sbjct: 69 IAELQGQVKEYTGCVTLGATTPSYDMETEIDQTFDIDHISEEMIQDATHSFIGKIQQYPP 128
Query: 423 MFSAIK---VRVFHFS 435
+FSA+K R++ F+
Sbjct: 129 VFSALKKDGKRLYEFA 144
>gi|124026479|ref|YP_001015594.1| tRNA pseudouridine 55 synthase [Prochlorococcus marinus str.
NATL1A]
gi|189036552|sp|A2C4C0.1|TRUB_PROM1 RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|123961547|gb|ABM76330.1| Putative tRNA pseudouridine 55 synthase [Prochlorococcus marinus
str. NATL1A]
Length = 314
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 79/124 (63%), Gaps = 2/124 (1%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
PFG V+++KP G TS +LR++ ++K+GH+GTLDP TG+L + +G AT+L+
Sbjct: 4 PFG-FVVIDKPSGLTSHDCVNRLRKVFGIRKIGHSGTLDPAVTGVLPIAIGDATRLISYL 62
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
QG K Y+G+ +LG T+T D +I+ + W I DI +FRGEI Q PP+FS+
Sbjct: 63 QGS-KAYTGIIQLGATTNTDDMQGEIIESKAWPLITQNDINYLLENFRGEILQKPPIFSS 121
Query: 427 IKVR 430
+ ++
Sbjct: 122 VHIK 125
>gi|375008238|ref|YP_004981871.1| tRNA pseudouridine synthase B [Geobacillus thermoleovorans
CCB_US3_UF5]
gi|359287087|gb|AEV18771.1| tRNA pseudouridine synthase B [Geobacillus thermoleovorans
CCB_US3_UF5]
Length = 302
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 57/120 (47%), Positives = 75/120 (62%), Gaps = 1/120 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L+NKPKG TS K+RRL+ VKK GH GTLDP +G+L +C+GKAT++ + G
Sbjct: 4 VLLLNKPKGMTSHDCVAKVRRLLGVKKAGHTGTLDPNVSGVLPICLGKATRIAEFLTGTT 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG AT+T DAD +I P + I +I S GEI Q PPM+SA+KV
Sbjct: 64 KTYEGKVTLGAATTTEDADGDIIAARPVDRPIARAEIEAVFDSLTGEIEQTPPMYSAVKV 123
>gi|333398739|ref|ZP_08480552.1| tRNA pseudouridine synthase B [Leuconostoc gelidum KCTC 3527]
gi|406599763|ref|YP_006745109.1| tRNA pseudouridine synthase B [Leuconostoc gelidum JB7]
gi|406371298|gb|AFS40223.1| tRNA pseudouridine synthase B [Leuconostoc gelidum JB7]
Length = 302
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 62/129 (48%), Positives = 81/129 (62%), Gaps = 4/129 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++VNKP+G TSF V K+RR + K+VGHAGTLDP G+L+V +GKATKL+D Q
Sbjct: 10 LIVVNKPRGVTSFDVVAKVRRAIGQKRVGHAGTLDPNVEGVLVVALGKATKLIDELQTRP 69
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG AT T D D VI + + D I A A+ G I QVPPMFSA+KV
Sbjct: 70 KRYVGSIILGFATETEDLDGEVISKIDIDVPFTDAAIDTAIANLNGTIKQVPPMFSAVKV 129
Query: 430 ---RVFHFS 435
R++ ++
Sbjct: 130 GGKRLYEYA 138
>gi|423290870|ref|ZP_17269719.1| tRNA pseudouridine synthase B [Bacteroides ovatus CL02T12C04]
gi|392664735|gb|EIY58272.1| tRNA pseudouridine synthase B [Bacteroides ovatus CL02T12C04]
Length = 240
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 75/127 (59%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ NKP GWTSF V G R R + VKK VGHAGTLDP+ATG++IVC GKATK
Sbjct: 6 GEVLFFNKPFGWTSFKVVGHARYHICRRIGVKKLKVGHAGTLDPLATGVMIVCTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y RLG T ++D + + P EHI E + + F G I QVPP
Sbjct: 66 IEEFQYHTKEYVATLRLGATTPSYDLEHEIDATYPTEHITRELVEEVLTHFIGAIEQVPP 125
Query: 423 MFSAIKV 429
FSA V
Sbjct: 126 AFSACMV 132
>gi|429752150|ref|ZP_19285029.1| tRNA pseudouridine synthase B [Capnocytophaga sp. oral taxon 326
str. F0382]
gi|429177841|gb|EKY19145.1| tRNA pseudouridine synthase B [Capnocytophaga sp. oral taxon 326
str. F0382]
Length = 544
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/137 (40%), Positives = 84/137 (61%), Gaps = 11/137 (8%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR-------RLVKVKKVGHAGTLDPMATGLLIVCVGKATK 361
G ++L++KP W+SF K++ +L K+K +GHAGTLDP+A+GLL++C GK TK
Sbjct: 12 GRILLIDKPLQWSSFQAVNKIKWAILKHYKLKKIK-IGHAGTLDPLASGLLVICTGKFTK 70
Query: 362 LVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVP 421
+ Q +K Y+G LG T ++D ++ + R P +HI E I + F GE+ Q P
Sbjct: 71 KITEIQDAVKTYTGTITLGATTPSYDMETEIDARYPTDHITPELIEQVRKQFMGELVQTP 130
Query: 422 PMFSAIK---VRVFHFS 435
P+FSAIK R++ F+
Sbjct: 131 PVFSAIKKDGKRLYEFA 147
>gi|326797983|ref|YP_004315802.1| tRNA pseudouridine synthase B [Sphingobacterium sp. 21]
gi|326548747|gb|ADZ77132.1| tRNA pseudouridine synthase B [Sphingobacterium sp. 21]
Length = 249
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 58/131 (44%), Positives = 83/131 (63%), Gaps = 2/131 (1%)
Query: 302 PTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVK--VKKVGHAGTLDPMATGLLIVCVGKA 359
P +D G ++L++KP WTSF V GK+R +K KVGHAGTLDP+ATGLLIVC GK
Sbjct: 11 PRFDFTAGEVLLIDKPYKWTSFDVVGKIRNALKPLKLKVGHAGTLDPLATGLLIVCTGKR 70
Query: 360 TKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQ 419
TK +D Q K Y G F LG T ++D ++ ++ ++D+ +A+ +F G I Q
Sbjct: 71 TKTIDELQAQEKEYIGTFTLGATTPSYDLETIPDSFFDITNLTEQDLLRASLTFVGAIEQ 130
Query: 420 VPPMFSAIKVR 430
PP+ SA+K++
Sbjct: 131 YPPVHSAVKMQ 141
>gi|213963603|ref|ZP_03391855.1| tRNA pseudouridine synthase B [Capnocytophaga sputigena Capno]
gi|213953731|gb|EEB65061.1| tRNA pseudouridine synthase B [Capnocytophaga sputigena Capno]
Length = 541
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 55/137 (40%), Positives = 84/137 (61%), Gaps = 11/137 (8%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR-------RLVKVKKVGHAGTLDPMATGLLIVCVGKATK 361
G ++L++KP W+SF K++ +L K+K +GHAGTLDP+A+GLL++C GK TK
Sbjct: 10 GRVLLIDKPLQWSSFQAVNKIKWAILKHYKLKKIK-IGHAGTLDPLASGLLVICTGKFTK 68
Query: 362 LVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVP 421
+ Q +K Y+G LG T ++D ++ + R P +HI E I + F GE+ Q P
Sbjct: 69 KITEIQDAVKTYTGTITLGATTPSYDMETEIDARYPTDHITPELIEQVRKQFMGELVQTP 128
Query: 422 PMFSAIK---VRVFHFS 435
P+FSAIK R++ F+
Sbjct: 129 PVFSAIKKDGKRLYEFA 145
>gi|309810446|ref|ZP_07704273.1| tRNA pseudouridine synthase B [Dermacoccus sp. Ellin185]
gi|308435598|gb|EFP59403.1| tRNA pseudouridine synthase B [Dermacoccus sp. Ellin185]
Length = 319
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 65/131 (49%), Positives = 81/131 (61%), Gaps = 6/131 (4%)
Query: 301 PPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKAT 360
P T DG +VLV+KP GWTS V G++RRL ++VGHAGTLDPMATG+L++ V KAT
Sbjct: 16 PQTPDG----LVLVDKPAGWTSHDVVGRMRRLANTRRVGHAGTLDPMATGVLVLGVNKAT 71
Query: 361 KLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPW--EHIKDEDIRKAAASFRGEIW 418
KL+ G K Y+ RLG+ T T DA+ V P + DE + A AS G+I
Sbjct: 72 KLLTFLVGCDKEYTATIRLGQTTITDDAEGGVTASTPLTRAELSDEALAAAVASLSGDIE 131
Query: 419 QVPPMFSAIKV 429
QVP SAIKV
Sbjct: 132 QVPSSVSAIKV 142
>gi|413918384|gb|AFW58316.1| hypothetical protein ZEAMMB73_199203 [Zea mays]
Length = 288
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 53/70 (75%), Positives = 60/70 (85%), Gaps = 2/70 (2%)
Query: 323 FTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEA 382
F C +L + + V +VGHAGTLDPMATGLLIVCVGKATK+ YQGM+KGYSGVFRLGEA
Sbjct: 158 FMKCERLSQQLDVSQVGHAGTLDPMATGLLIVCVGKATKIY--YQGMVKGYSGVFRLGEA 215
Query: 383 TSTWDADSPV 392
TSTWDADSP+
Sbjct: 216 TSTWDADSPL 225
>gi|237722116|ref|ZP_04552597.1| tRNA pseudouridine synthase B [Bacteroides sp. 2_2_4]
gi|262405677|ref|ZP_06082227.1| tRNA pseudouridine synthase B [Bacteroides sp. 2_1_22]
gi|293368621|ref|ZP_06615228.1| tRNA pseudouridine synthase B [Bacteroides ovatus SD CMC 3f]
gi|294644381|ref|ZP_06722144.1| tRNA pseudouridine synthase B [Bacteroides ovatus SD CC 2a]
gi|345510870|ref|ZP_08790430.1| tRNA pseudouridine synthase B [Bacteroides sp. D1]
gi|229442892|gb|EEO48683.1| tRNA pseudouridine synthase B [Bacteroides sp. D1]
gi|229448985|gb|EEO54776.1| tRNA pseudouridine synthase B [Bacteroides sp. 2_2_4]
gi|262356552|gb|EEZ05642.1| tRNA pseudouridine synthase B [Bacteroides sp. 2_1_22]
gi|292636263|gb|EFF54748.1| tRNA pseudouridine synthase B [Bacteroides ovatus SD CMC 3f]
gi|292640216|gb|EFF58471.1| tRNA pseudouridine synthase B [Bacteroides ovatus SD CC 2a]
Length = 240
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 75/127 (59%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ NKP GWTSF V G R R + VKK VGHAGTLDP+ATG++IVC GKATK
Sbjct: 6 GEVLFFNKPLGWTSFKVVGHARYHICRRIGVKKLKVGHAGTLDPLATGVMIVCTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y RLG T ++D + + P EHI E + + F G I QVPP
Sbjct: 66 IEEFQYHTKEYVATLRLGATTPSYDLEHEIDATYPTEHITRELVEEVLTHFIGAIDQVPP 125
Query: 423 MFSAIKV 429
FSA V
Sbjct: 126 AFSACMV 132
>gi|442804549|ref|YP_007372698.1| tRNA pseudouridine synthase B [Clostridium stercorarium subsp.
stercorarium DSM 8532]
gi|442740399|gb|AGC68088.1| tRNA pseudouridine synthase B [Clostridium stercorarium subsp.
stercorarium DSM 8532]
Length = 303
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 59/119 (49%), Positives = 80/119 (67%), Gaps = 1/119 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++LV KP G TSF V LR+++KVKK+GHAGTLDP A GLL VC+GKATK ++R+
Sbjct: 4 ILLVIKPPGMTSFDVVAYLRKILKVKKIGHAGTLDPSAGGLLPVCLGKATKAIERFLNFD 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y LG T T DA+ V++++ + D I +A SF+G+ Q+PPM+SAIKV
Sbjct: 64 KSYRAEMVLGVVTDTQDAEGRVLEKKDVT-LDDTAIIEAVNSFKGKYGQIPPMYSAIKV 121
>gi|150016089|ref|YP_001308343.1| tRNA pseudouridine synthase B [Clostridium beijerinckii NCIMB 8052]
gi|149902554|gb|ABR33387.1| tRNA pseudouridine synthase B [Clostridium beijerinckii NCIMB 8052]
Length = 299
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 57/123 (46%), Positives = 79/123 (64%), Gaps = 3/123 (2%)
Query: 316 KPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSG 375
K KG TSF V K++ L KKVGH GTLDP ATG+L VC+GKATK +D K Y
Sbjct: 17 KNKGMTSFDVVRKIKFLANEKKVGHTGTLDPEATGVLPVCLGKATKTIDYIMNSNKVYEV 76
Query: 376 VFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK---VRVF 432
F LG T+T+D + ++++ +HIK +++ + A SF GE QVPPM+SA+K VR++
Sbjct: 77 KFLLGVKTTTYDLEGEILEKNEIDHIKSDEVSEVALSFIGEYDQVPPMYSALKKNGVRLY 136
Query: 433 HFS 435
+
Sbjct: 137 ELA 139
>gi|15827813|ref|NP_302076.1| tRNA pseudouridine synthase B [Mycobacterium leprae TN]
gi|221230290|ref|YP_002503706.1| tRNA pseudouridine synthase B [Mycobacterium leprae Br4923]
gi|13959607|sp|Q9Z5I4.1|TRUB_MYCLE RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|4455683|emb|CAB36580.1| possible tRNA pseudouridine synthase B [Mycobacterium leprae]
gi|13093365|emb|CAC30497.1| tRNA pseudouridine 55 synthase [Mycobacterium leprae]
gi|219933397|emb|CAR71641.1| tRNA pseudouridine 55 synthase [Mycobacterium leprae Br4923]
Length = 320
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 75/119 (63%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+++KP G TS V + RR+ ++VGHAGTLDPMATG+L++ V +ATK++ G
Sbjct: 14 IVVIDKPSGMTSHDVVARCRRIFCTRRVGHAGTLDPMATGVLVLGVDRATKILGLLAGAS 73
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y RLG+ TST DA+ ++Q H+ DE I A RG+I QVP SAIKV
Sbjct: 74 KEYVATIRLGQTTSTEDAEGELLQCVSARHVTDEAIATAIGRLRGDIKQVPSAVSAIKV 132
>gi|315918414|ref|ZP_07914654.1| tRNA pseudouridine synthase B [Fusobacterium gonidiaformans ATCC
25563]
gi|313692289|gb|EFS29124.1| tRNA pseudouridine synthase B [Fusobacterium gonidiaformans ATCC
25563]
Length = 285
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 80/120 (66%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++++NK KG +SF V LR+L++ +K+GH GTLDP+ATG+LI+C+GKAT+L +
Sbjct: 4 IIIINKEKGMSSFDVIRSLRKLLQERKIGHTGTLDPLATGVLILCLGKATRLSQEIEAQE 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVR 430
K Y G T T+D + ++ P + +K E+ + + ++G+I Q+PPM+SAIK++
Sbjct: 64 KVYEAEMEFGYQTDTYDLEGEIVATSPKKEVKREEFEEVLSHWKGKISQIPPMYSAIKIQ 123
>gi|56419801|ref|YP_147119.1| tRNA pseudouridine synthase B [Geobacillus kaustophilus HTA426]
gi|62901181|sp|Q5L0I5.1|TRUB_GEOKA RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|56379643|dbj|BAD75551.1| tRNA pseudouridine 5S synthase [Geobacillus kaustophilus HTA426]
Length = 285
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 57/120 (47%), Positives = 75/120 (62%), Gaps = 1/120 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L+NKPKG TS K+RRL+ VKK GH GTLDP +G+L +C+GKAT++ + G
Sbjct: 4 VLLLNKPKGMTSHDCVAKVRRLLGVKKAGHTGTLDPNVSGVLPICLGKATRIAEFLTGTT 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG AT+T DAD +I P + I +I S GEI Q PPM+SA+KV
Sbjct: 64 KTYEGKVTLGAATTTEDADGDIIAARPVDRPIARAEIEAVFDSLTGEIEQTPPMYSAVKV 123
>gi|298483290|ref|ZP_07001469.1| tRNA pseudouridine synthase B [Bacteroides sp. D22]
gi|336413008|ref|ZP_08593361.1| tRNA pseudouridine synthase B [Bacteroides ovatus 3_8_47FAA]
gi|423214586|ref|ZP_17201114.1| tRNA pseudouridine synthase B [Bacteroides xylanisolvens
CL03T12C04]
gi|298270607|gb|EFI12189.1| tRNA pseudouridine synthase B [Bacteroides sp. D22]
gi|335943054|gb|EGN04896.1| tRNA pseudouridine synthase B [Bacteroides ovatus 3_8_47FAA]
gi|392692492|gb|EIY85729.1| tRNA pseudouridine synthase B [Bacteroides xylanisolvens
CL03T12C04]
Length = 240
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 75/127 (59%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ NKP GWTSF V G R R + VKK VGHAGTLDP+ATG++IVC GKATK
Sbjct: 6 GEVLFFNKPLGWTSFKVVGHARYHICRRIGVKKLKVGHAGTLDPLATGVMIVCTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y RLG T ++D + + P EHI E + + F G I QVPP
Sbjct: 66 IEEFQYHTKEYVATLRLGATTPSYDLEHEIDATYPTEHITRELVEEVLTRFIGAIDQVPP 125
Query: 423 MFSAIKV 429
FSA V
Sbjct: 126 AFSACMV 132
>gi|374625675|ref|ZP_09698091.1| tRNA pseudouridine synthase B [Coprobacillus sp. 8_2_54BFAA]
gi|373915335|gb|EHQ47106.1| tRNA pseudouridine synthase B [Coprobacillus sp. 8_2_54BFAA]
Length = 280
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 75/119 (63%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++LVNKP G TS V KLRR++K KKVGH GTLDP ATG+L+VCV KATK++
Sbjct: 4 IILVNKPSGMTSHDVVNKLRRILKTKKVGHCGTLDPDATGVLVVCVNKATKVLQFLTSES 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y LG +T T+DA +I+ + + + + +I +F G Q PP++SAIKV
Sbjct: 64 KEYVATLSLGTSTDTYDASGKIIETKEFHALDNNEIVACFNNFIGSQEQKPPIYSAIKV 122
>gi|296129361|ref|YP_003636611.1| tRNA pseudouridine synthase B [Cellulomonas flavigena DSM 20109]
gi|296021176|gb|ADG74412.1| tRNA pseudouridine synthase B [Cellulomonas flavigena DSM 20109]
Length = 336
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 78/129 (60%), Gaps = 4/129 (3%)
Query: 301 PPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKAT 360
P DG +++V+KP GWTS V ++RRL +KVGHAGTLDPMATG+L+V +G+AT
Sbjct: 35 PTAADG----LLVVDKPAGWTSHDVVARVRRLASTRKVGHAGTLDPMATGVLVVGIGRAT 90
Query: 361 KLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQV 420
+L+ G K Y+ RLG T+T DA+ + R I D+ A+ G++ QV
Sbjct: 91 RLLTYVTGADKDYTATVRLGVVTTTDDAEGETLARTDASGIARGDLDAQVAALTGDVQQV 150
Query: 421 PPMFSAIKV 429
P SAIKV
Sbjct: 151 PSSVSAIKV 159
>gi|240146070|ref|ZP_04744671.1| tRNA pseudouridine 55 synthase [Roseburia intestinalis L1-82]
gi|257201815|gb|EEV00100.1| tRNA pseudouridine 55 synthase [Roseburia intestinalis L1-82]
gi|291536073|emb|CBL09185.1| tRNA pseudouridine synthase B [Roseburia intestinalis M50/1]
Length = 321
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 58/119 (48%), Positives = 77/119 (64%), Gaps = 1/119 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ V K KG+TSF V KLR ++K KK+GH GTLDP A G+L VC+GKATK+ D
Sbjct: 15 IINVYKEKGYTSFDVVAKLRGILKTKKIGHTGTLDPDAEGVLPVCLGKATKVCDLLTDKN 74
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y V LG+ T T D V++ P E + +E +++A SF GE QVPPM+SA+KV
Sbjct: 75 KEYVAVMLLGKVTDTQDTTGTVLEEHPVE-VTEEQVKEAVLSFTGEYMQVPPMYSALKV 132
>gi|373855001|ref|ZP_09597798.1| tRNA pseudouridine synthase B [Opitutaceae bacterium TAV5]
gi|372471783|gb|EHP31796.1| tRNA pseudouridine synthase B [Opitutaceae bacterium TAV5]
Length = 242
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 78/119 (65%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP TS V +LR ++ +K+VGHAGTLDPMATGLL+V VGKAT L
Sbjct: 11 VLLIDKPTDHTSHDVIARLRGILHMKRVGHAGTLDPMATGLLVVLVGKATSLSQYLMSAD 70
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
KGY+G LG+ T+T DA+ +++ P + + + A S G+ +Q+PPMFSAIK+
Sbjct: 71 KGYTGTVTLGKTTNTQDAEGEMLETRPVPPLTEAQVAAALRSMLGDQYQMPPMFSAIKI 129
>gi|160884924|ref|ZP_02065927.1| hypothetical protein BACOVA_02914 [Bacteroides ovatus ATCC 8483]
gi|299145176|ref|ZP_07038244.1| tRNA pseudouridine synthase B [Bacteroides sp. 3_1_23]
gi|336403516|ref|ZP_08584231.1| tRNA pseudouridine synthase B [Bacteroides sp. 1_1_30]
gi|423293848|ref|ZP_17271975.1| tRNA pseudouridine synthase B [Bacteroides ovatus CL03T12C18]
gi|156109959|gb|EDO11704.1| tRNA pseudouridine synthase B [Bacteroides ovatus ATCC 8483]
gi|295085895|emb|CBK67418.1| tRNA pseudouridine synthase B [Bacteroides xylanisolvens XB1A]
gi|298515667|gb|EFI39548.1| tRNA pseudouridine synthase B [Bacteroides sp. 3_1_23]
gi|335945846|gb|EGN07653.1| tRNA pseudouridine synthase B [Bacteroides sp. 1_1_30]
gi|392677806|gb|EIY71222.1| tRNA pseudouridine synthase B [Bacteroides ovatus CL03T12C18]
Length = 240
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 75/127 (59%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ NKP GWTSF V G R R + VKK VGHAGTLDP+ATG++IVC GKATK
Sbjct: 6 GEVLFFNKPFGWTSFKVVGHARYHICRRIGVKKLKVGHAGTLDPLATGVMIVCTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y RLG T ++D + + P EHI E + + F G I QVPP
Sbjct: 66 IEEFQYHTKEYVATLRLGATTPSYDLEHEIDATYPTEHITRELVEEVLTHFIGAIDQVPP 125
Query: 423 MFSAIKV 429
FSA V
Sbjct: 126 AFSACMV 132
>gi|391231119|ref|ZP_10267325.1| tRNA pseudouridine 55 synthase [Opitutaceae bacterium TAV1]
gi|391220780|gb|EIP99200.1| tRNA pseudouridine 55 synthase [Opitutaceae bacterium TAV1]
Length = 242
Score = 112 bits (279), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 78/119 (65%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP TS V +LR ++ +K+VGHAGTLDPMATGLL+V VGKAT L
Sbjct: 11 VLLIDKPTDHTSHDVIARLRGILHMKRVGHAGTLDPMATGLLVVLVGKATSLSQYLMSAD 70
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
KGY+G LG+ T+T DA+ +++ P + + + A S G+ +Q+PPMFSAIK+
Sbjct: 71 KGYTGTVTLGKTTNTQDAEGEMLETRPVPPLTEAQVAAALRSMLGDQYQMPPMFSAIKI 129
>gi|365832580|ref|ZP_09374112.1| tRNA pseudouridine synthase B [Coprobacillus sp. 3_3_56FAA]
gi|365260244|gb|EHM90207.1| tRNA pseudouridine synthase B [Coprobacillus sp. 3_3_56FAA]
Length = 280
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 75/119 (63%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++LVNKP G TS V KLRR++K KKVGH GTLDP ATG+L+VCV KATK++
Sbjct: 4 IILVNKPSGMTSHDVVNKLRRILKTKKVGHCGTLDPDATGVLVVCVNKATKVLQFLTSES 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y LG +T T+DA +I+ + + + + +I +F G Q PP++SAIKV
Sbjct: 64 KEYVATLSLGTSTDTYDASGKIIETKEFHALDNNEIVACFNNFIGSQEQKPPIYSAIKV 122
>gi|167756862|ref|ZP_02428989.1| hypothetical protein CLORAM_02411 [Clostridium ramosum DSM 1402]
gi|167703037|gb|EDS17616.1| tRNA pseudouridine synthase B [Clostridium ramosum DSM 1402]
Length = 282
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 75/119 (63%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++LVNKP G TS V KLRR++K KKVGH GTLDP ATG+L+VCV KATK++
Sbjct: 6 IILVNKPSGMTSHDVVNKLRRILKTKKVGHCGTLDPDATGVLVVCVNKATKVLQFLTSES 65
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y LG +T T+DA +I+ + + + + +I +F G Q PP++SAIKV
Sbjct: 66 KEYVATLSLGTSTDTYDASGKIIETKEFHALDNNEIVACFNNFIGSQEQKPPIYSAIKV 124
>gi|410727058|ref|ZP_11365281.1| tRNA pseudouridine 55 synthase [Clostridium sp. Maddingley
MBC34-26]
gi|410599393|gb|EKQ53946.1| tRNA pseudouridine 55 synthase [Clostridium sp. Maddingley
MBC34-26]
Length = 327
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 54/134 (40%), Positives = 85/134 (63%), Gaps = 3/134 (2%)
Query: 305 DGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVD 364
+ P ++ + K KG +SF V K++ + KKVGH GTLDP ATG+L VC+GKATK++D
Sbjct: 34 NAPINGVLNIFKNKGMSSFDVVRKVKFIASEKKVGHTGTLDPQATGVLPVCIGKATKIID 93
Query: 365 RYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMF 424
K Y F LG T+T+D + +++++ EH+ ++++ + SF GE QVPPM+
Sbjct: 94 YIMNSNKVYDVKFLLGTKTTTYDLEGEIVEKKETEHLTEDEVSEIILSFIGEYDQVPPMY 153
Query: 425 SAIK---VRVFHFS 435
SA+K VR++ +
Sbjct: 154 SALKKNGVRLYDLA 167
>gi|414596851|ref|ZP_11446424.1| tRNA pseudouridine synthase B [Leuconostoc citreum LBAE E16]
gi|390482503|emb|CCF28485.1| tRNA pseudouridine synthase B [Leuconostoc citreum LBAE E16]
Length = 302
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 60/129 (46%), Positives = 83/129 (64%), Gaps = 4/129 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++++NKP+G TSF V K+RR + KKVGHAGTLDP +G+L+V +GKATKL+D Q
Sbjct: 10 VIVINKPRGVTSFDVVAKVRRAIGQKKVGHAGTLDPDVSGVLVVALGKATKLIDELQSRP 69
Query: 371 KGYSGVFRLGEATSTWDADSPVI-QREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG AT T D +I ++E D+ I +A S G I QVPPM+SA+KV
Sbjct: 70 KRYVGDITLGFATETEDLSGEIISEKEITVPYSDQQIDEAIQSLNGSIKQVPPMYSAVKV 129
Query: 430 ---RVFHFS 435
R++ ++
Sbjct: 130 AGKRLYEYA 138
>gi|170017447|ref|YP_001728366.1| tRNA pseudouridine synthase B [Leuconostoc citreum KM20]
gi|169804304|gb|ACA82922.1| tRNA pseudouridine synthase B [Leuconostoc citreum KM20]
Length = 315
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 60/129 (46%), Positives = 83/129 (64%), Gaps = 4/129 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++++NKP+G TSF V K+RR + KKVGHAGTLDP +G+L+V +GKATKL+D Q
Sbjct: 23 VIVINKPRGVTSFDVVAKVRRAIGQKKVGHAGTLDPDVSGVLVVALGKATKLIDELQSRP 82
Query: 371 KGYSGVFRLGEATSTWDADSPVI-QREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG AT T D +I ++E D+ I +A S G I QVPPM+SA+KV
Sbjct: 83 KRYVGDITLGFATETEDLSGEIISEKEITVPYSDQQIDEAIQSLNGSIKQVPPMYSAVKV 142
Query: 430 ---RVFHFS 435
R++ ++
Sbjct: 143 AGKRLYEYA 151
>gi|336117227|ref|YP_004571994.1| tRNA pseudouridine synthase B [Microlunatus phosphovorus NM-1]
gi|334685006|dbj|BAK34591.1| tRNA pseudouridine synthase B [Microlunatus phosphovorus NM-1]
Length = 296
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 58/123 (47%), Positives = 76/123 (61%), Gaps = 1/123 (0%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P G V ++KP GWTS V G+ RRL+ ++KVGHAGTLDPMATG+L+V VG+AT+L+ +
Sbjct: 5 PSGVAV-IDKPAGWTSHQVVGRCRRLLGMRKVGHAGTLDPMATGVLVVGVGRATRLLGQL 63
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
K Y RLG+AT T DA+ + + D +I + F G I QVP SA
Sbjct: 64 ALTDKAYDATIRLGQATITDDAEGEITGSAGATGLADTEIEAVLSRFCGAIEQVPSAVSA 123
Query: 427 IKV 429
IKV
Sbjct: 124 IKV 126
>gi|237734572|ref|ZP_04565053.1| tRNA pseudouridine synthase B [Mollicutes bacterium D7]
gi|229382392|gb|EEO32483.1| tRNA pseudouridine synthase B [Coprobacillus sp. D7]
Length = 283
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 75/119 (63%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++LVNKP G TS V KLRR++K KKVGH GTLDP ATG+L+VCV KATK++
Sbjct: 7 IILVNKPSGMTSHDVVNKLRRILKTKKVGHCGTLDPDATGVLVVCVNKATKVLQFLTSES 66
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y LG +T T+DA +I+ + + + + +I +F G Q PP++SAIKV
Sbjct: 67 KEYVATLSLGTSTDTYDASGKIIETKEFHALDNNEIVACFNNFIGSQEQKPPIYSAIKV 125
>gi|303278928|ref|XP_003058757.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226459917|gb|EEH57212.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 242
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 60/128 (46%), Positives = 86/128 (67%), Gaps = 9/128 (7%)
Query: 311 MVLVNKPKGWTSFTVCGKLR---RLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQ 367
++LV+KP+G+TSF V ++R R + VKKVGH GTLDPMATG+L++CVG+A + V +
Sbjct: 2 VLLVDKPRGYTSFDVVARVRGIARRMGVKKVGHCGTLDPMATGVLVLCVGQA-RSVSPWS 60
Query: 368 GMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIW-----QVPP 422
+ Y G +LGE T + DAD+ PWE I D+++R AAA G++ Q+PP
Sbjct: 61 PYDRAYVGTMKLGERTPSQDADTAPDATFPWEGIADDELRDAAAKLVGDLKQAHDPQLPP 120
Query: 423 MFSAIKVR 430
M+SAIKV+
Sbjct: 121 MYSAIKVK 128
>gi|329929279|ref|ZP_08283032.1| tRNA pseudouridine synthase B [Paenibacillus sp. HGF5]
gi|328936648|gb|EGG33091.1| tRNA pseudouridine synthase B [Paenibacillus sp. HGF5]
Length = 303
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 79/119 (66%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ V+KP GWTS V K+R +V++K++GH GTLDP TG+L +C+G+AT++V+ Q +
Sbjct: 7 ILAVHKPAGWTSHDVVAKVRGMVRLKRIGHTGTLDPEVTGVLPLCLGRATRVVEYLQELP 66
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y V RLG +T T D V++ + ++ +A SF G+I QVPPM+SA+K+
Sbjct: 67 KEYHAVLRLGYSTDTEDITGNVVETADEVRVTRDEALEALQSFTGQISQVPPMYSAVKI 125
>gi|29348622|ref|NP_812125.1| tRNA pseudouridine synthase B [Bacteroides thetaiotaomicron
VPI-5482]
gi|298386990|ref|ZP_06996544.1| tRNA pseudouridine synthase B [Bacteroides sp. 1_1_14]
gi|383124792|ref|ZP_09945453.1| tRNA pseudouridine synthase B [Bacteroides sp. 1_1_6]
gi|37088414|sp|Q8A2U2.1|TRUB_BACTN RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|29340527|gb|AAO78319.1| tRNA pseudouridine synthase B [Bacteroides thetaiotaomicron
VPI-5482]
gi|251841054|gb|EES69135.1| tRNA pseudouridine synthase B [Bacteroides sp. 1_1_6]
gi|298260140|gb|EFI03010.1| tRNA pseudouridine synthase B [Bacteroides sp. 1_1_14]
Length = 240
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 75/127 (59%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ NKP GWTSF V G +R R + VKK VGHAGTLDP+ATG++I+C GKATK
Sbjct: 6 GEVLFFNKPLGWTSFKVVGHVRYHICRRIGVKKLKVGHAGTLDPLATGVMILCTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y RLG T ++D + + P HI E + + F G I QVPP
Sbjct: 66 IEEFQYHTKEYVATLRLGATTPSYDLEHEIDATYPTGHITRELVEETLTHFLGAIEQVPP 125
Query: 423 MFSAIKV 429
FSA V
Sbjct: 126 AFSACMV 132
>gi|304404296|ref|ZP_07385958.1| tRNA pseudouridine synthase B [Paenibacillus curdlanolyticus YK9]
gi|304347274|gb|EFM13106.1| tRNA pseudouridine synthase B [Paenibacillus curdlanolyticus YK9]
Length = 302
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 77/119 (64%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ V KP GWTS V K+R + +VK++GHAGTLDP TG+L +C+G+AT++V+ Q
Sbjct: 4 ILAVWKPAGWTSHDVVAKVRGITRVKRIGHAGTLDPQVTGVLPLCIGRATRVVEYLQERP 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y V +LG AT T D ++ + E++ A A+F GEI QVPPM+SA+KV
Sbjct: 64 KAYEAVLQLGIATDTEDMTGTTVEEVDSVSVTREEVAAALAAFIGEIDQVPPMYSALKV 122
>gi|423349463|ref|ZP_17327119.1| tRNA pseudouridine synthase B [Scardovia wiggsiae F0424]
gi|393703011|gb|EJD65213.1| tRNA pseudouridine synthase B [Scardovia wiggsiae F0424]
Length = 356
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 57/123 (46%), Positives = 77/123 (62%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P + +V+KP+G TS V R+L+ +KKVGHAGTLDPMATG L++ GKAT+L++
Sbjct: 14 PSSGVFVVDKPQGVTSHDVVAAARKLLHMKKVGHAGTLDPMATGALVIGFGKATRLLNVI 73
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
G K Y V RLG++T+T DA+ + + + D I AA S G I QVP FSA
Sbjct: 74 TGADKTYETVIRLGQSTATDDAEGSITREYDTSAVSDGQIYAAARSLTGTIRQVPSAFSA 133
Query: 427 IKV 429
+KV
Sbjct: 134 VKV 136
>gi|298373559|ref|ZP_06983548.1| tRNA pseudouridine synthase B [Bacteroidetes oral taxon 274 str.
F0058]
gi|298274611|gb|EFI16163.1| tRNA pseudouridine synthase B [Bacteroidetes oral taxon 274 str.
F0058]
Length = 236
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 54/135 (40%), Positives = 82/135 (60%), Gaps = 8/135 (5%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK-----KVGHAGTLDPMATGLLIVCVGKATKLV 363
G ++ +KP WTSF + G++R ++ KVGHAGTLDP+ATG++I+ GKATK +
Sbjct: 6 GEILYFDKPLTWTSFDLVGRIRNIITRATGEKIKVGHAGTLDPLATGIMILATGKATKQI 65
Query: 364 DRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPM 423
+ Q +K Y +LG T ++D + P P +HI E I + F+GEI QVPP+
Sbjct: 66 ETLQSGVKEYIATLKLGATTPSFDMEHPEDAVYPTDHITKEMITNTLSHFKGEIMQVPPV 125
Query: 424 FSAIKV---RVFHFS 435
+SA+K+ R F ++
Sbjct: 126 YSAVKINGKRAFDYA 140
>gi|354604245|ref|ZP_09022236.1| tRNA pseudouridine synthase B [Alistipes indistinctus YIT 12060]
gi|353348012|gb|EHB92286.1| tRNA pseudouridine synthase B [Alistipes indistinctus YIT 12060]
Length = 245
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 59/130 (45%), Positives = 79/130 (60%), Gaps = 5/130 (3%)
Query: 302 PTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVK-----KVGHAGTLDPMATGLLIVCV 356
P + P G ++ V+KP GWTS V K+R L++ KVGHAGTLDP+ATG+LIVC+
Sbjct: 2 PDFPFPEGYVLPVDKPLGWTSSDVVRKMRVLLRRLGHRKIKVGHAGTLDPLATGVLIVCI 61
Query: 357 GKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGE 416
G+ATK VD Q K Y RLG T ++D + PV Q P+ H+ ++ I A GE
Sbjct: 62 GRATKRVDELQAEEKEYLTTVRLGATTPSYDLEHPVDQTYPYGHVTEKSILAALQEMEGE 121
Query: 417 IWQVPPMFSA 426
Q PP++SA
Sbjct: 122 QLQEPPVYSA 131
>gi|228472731|ref|ZP_04057489.1| tRNA pseudouridine synthase B [Capnocytophaga gingivalis ATCC
33624]
gi|228275782|gb|EEK14548.1| tRNA pseudouridine synthase B [Capnocytophaga gingivalis ATCC
33624]
Length = 229
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 55/126 (43%), Positives = 75/126 (59%), Gaps = 6/126 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK------KVGHAGTLDPMATGLLIVCVGKATKL 362
GT +L++KP W+SF KL+ + K K+GHAGTLDP+ATGLLI+C GK TKL
Sbjct: 7 GTTILIDKPLHWSSFQAVNKLKWAIIKKYHLKKFKIGHAGTLDPLATGLLILCTGKHTKL 66
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+ Q K Y+G LG T ++D ++ + R HI +E I + F G + Q PP
Sbjct: 67 ISSLQDAPKTYTGTIALGATTPSYDLETEIDARFATSHITEELIEQVRMQFTGVLLQAPP 126
Query: 423 MFSAIK 428
+FSAIK
Sbjct: 127 LFSAIK 132
>gi|381336818|ref|YP_005174593.1| pseudouridine synthase [Leuconostoc mesenteroides subsp.
mesenteroides J18]
gi|356644784|gb|AET30627.1| pseudouridine synthase [Leuconostoc mesenteroides subsp.
mesenteroides J18]
Length = 302
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 82/129 (63%), Gaps = 4/129 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++++NKP+G TSF V ++RR++ KKVGHAGTLDP G+L+V +GKATKL+D Q
Sbjct: 10 LLVINKPRGMTSFDVVSRVRRIIGQKKVGHAGTLDPNVDGVLVVALGKATKLIDELQTRP 69
Query: 371 KGYSGVFRLGEATSTWDADSPVI-QREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T T D D ++ Q + D+ I +A GEI Q PPM+SA+KV
Sbjct: 70 KSYIGEITLGFSTETEDLDGEIVDQLDIVTPFSDQKIDQAIQQLNGEITQRPPMYSAVKV 129
Query: 430 ---RVFHFS 435
R++ ++
Sbjct: 130 NGKRLYEYA 138
>gi|379748234|ref|YP_005339055.1| tRNA pseudouridine synthase B [Mycobacterium intracellulare ATCC
13950]
gi|379755522|ref|YP_005344194.1| tRNA pseudouridine synthase B [Mycobacterium intracellulare
MOTT-02]
gi|378800598|gb|AFC44734.1| tRNA pseudouridine synthase B [Mycobacterium intracellulare ATCC
13950]
gi|378805738|gb|AFC49873.1| tRNA pseudouridine synthase B [Mycobacterium intracellulare
MOTT-02]
Length = 301
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 74/119 (62%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP TS V G+ RR+ ++VGHAGTLDPMATG+L++ V +ATK++
Sbjct: 6 IVVVDKPPAMTSHDVVGRCRRIFSTRRVGHAGTLDPMATGVLVIGVERATKILGLLSASS 65
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ RLG++TST DA+ + P H+ E I A RG+I QVP SAIKV
Sbjct: 66 KSYAATIRLGQSTSTDDAEGEPVHSVPAGHLTAEAIETAVEGLRGDIAQVPSTVSAIKV 124
>gi|365960820|ref|YP_004942387.1| tRNA pseudouridine synthase B [Flavobacterium columnare ATCC 49512]
gi|365737501|gb|AEW86594.1| tRNA pseudouridine synthase B [Flavobacterium columnare ATCC 49512]
Length = 232
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/127 (43%), Positives = 77/127 (60%), Gaps = 7/127 (5%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK-------KVGHAGTLDPMATGLLIVCVGKATK 361
G ++L++KP W+SF KL+ ++K + K+GH+GTLDP+ATGLLIVC GK TK
Sbjct: 10 GQILLIDKPLNWSSFQAVNKLKYVLKNRLDLPKKFKIGHSGTLDPLATGLLIVCTGKYTK 69
Query: 362 LVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVP 421
+ G K Y+G +LG T ++D ++PV P HI I + F GEI Q P
Sbjct: 70 KIPELMGQTKEYTGTIQLGATTPSYDLETPVNATFPINHITPVLITETVKQFIGEIEQKP 129
Query: 422 PMFSAIK 428
P+FSA+K
Sbjct: 130 PVFSALK 136
>gi|288799661|ref|ZP_06405120.1| tRNA pseudouridine synthase B [Prevotella sp. oral taxon 299 str.
F0039]
gi|288332909|gb|EFC71388.1| tRNA pseudouridine synthase B [Prevotella sp. oral taxon 299 str.
F0039]
Length = 235
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 76/127 (59%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRL------VKVKKVGHAGTLDPMATGLLIVCVGKATKL 362
G ++ ++KP G TSF +R L VK KVGHAGTLDP+ATG+L +C GKATKL
Sbjct: 6 GEIIHIDKPYGITSFGALAHIRYLLSRKLGVKRLKVGHAGTLDPLATGVLTLCTGKATKL 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+++ QG K Y +LG T ++D + PV + EHI E I F G+I QVPP
Sbjct: 66 IEQLQGHTKEYVATMQLGATTPSYDMEHPVNETFETEHIHRESIDAVLPLFIGDIQQVPP 125
Query: 423 MFSAIKV 429
+SA KV
Sbjct: 126 SYSACKV 132
>gi|254821335|ref|ZP_05226336.1| tRNA pseudouridine synthase B [Mycobacterium intracellulare ATCC
13950]
Length = 301
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 74/119 (62%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP TS V G+ RR+ ++VGHAGTLDPMATG+L++ V +ATK++
Sbjct: 6 IVVVDKPPAMTSHDVVGRCRRIFSTRRVGHAGTLDPMATGVLVIGVERATKILGLLSASS 65
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ RLG++TST DA+ + P H+ E I A RG+I QVP SAIKV
Sbjct: 66 KSYAATIRLGQSTSTDDAEGEPVHSVPAGHLTAEAIETAVEGLRGDIAQVPSTVSAIKV 124
>gi|304384873|ref|ZP_07367219.1| tRNA pseudouridine synthase B [Pediococcus acidilactici DSM 20284]
gi|304329067|gb|EFL96287.1| tRNA pseudouridine synthase B [Pediococcus acidilactici DSM 20284]
Length = 300
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/120 (45%), Positives = 76/120 (63%), Gaps = 1/120 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ +NK +G TS V K+R +++ KKVGH+GTLDP G+L VCVG+ATK+VD
Sbjct: 4 IIPINKERGMTSHDVVAKVRGILRTKKVGHSGTLDPSVDGVLPVCVGRATKVVDYLMRFG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG AT+T D D V++R+P + D I A GE+ Q+PPM+SA+KV
Sbjct: 64 KTYQGSITLGLATTTEDLDGEVVERQPLSKPLTDAQIGAALKQMTGELTQIPPMYSAVKV 123
>gi|138894786|ref|YP_001125239.1| tRNA pseudouridine synthase B [Geobacillus thermodenitrificans
NG80-2]
gi|196247590|ref|ZP_03146292.1| tRNA pseudouridine synthase B [Geobacillus sp. G11MC16]
gi|189036483|sp|A4IME0.1|TRUB_GEOTN RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|134266299|gb|ABO66494.1| tRNA pseudouridine 55 synthase [Geobacillus thermodenitrificans
NG80-2]
gi|196212374|gb|EDY07131.1| tRNA pseudouridine synthase B [Geobacillus sp. G11MC16]
Length = 302
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/120 (46%), Positives = 76/120 (63%), Gaps = 1/120 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L+NKPKG TS K+RRL+ +KKVGH GTLDP +G+L +C+GKAT++ + G
Sbjct: 4 VLLLNKPKGMTSHDCVAKVRRLLGIKKVGHTGTLDPNVSGVLPICLGKATRIAEFLTGAT 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG ATST DAD +I + + I +I S G+I Q PPM+SA+KV
Sbjct: 64 KTYEGEVTLGAATSTEDADGDIIAVQTVDRTIARAEIEAVFRSLTGDIEQTPPMYSAVKV 123
>gi|427439048|ref|ZP_18923790.1| tRNA pseudouridine synthase B [Pediococcus lolii NGRI 0510Q]
gi|425788426|dbj|GAC44578.1| tRNA pseudouridine synthase B [Pediococcus lolii NGRI 0510Q]
Length = 301
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/120 (45%), Positives = 76/120 (63%), Gaps = 1/120 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ +NK +G TS V K+R +++ KKVGH+GTLDP G+L VCVG+ATK+VD
Sbjct: 4 IIPINKERGMTSHDVVAKVRGILRTKKVGHSGTLDPSVDGVLPVCVGRATKVVDYLMRFG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG AT+T D D V++R+P + D I A GE+ Q+PPM+SA+KV
Sbjct: 64 KTYQGSITLGLATTTEDLDGEVVERQPLSKPLTDAQIDAALKQMTGELTQIPPMYSAVKV 123
>gi|420144442|ref|ZP_14651930.1| tRNA pseudouridine synthase B [Lactococcus garvieae IPLA 31405]
gi|391855894|gb|EIT66443.1| tRNA pseudouridine synthase B [Lactococcus garvieae IPLA 31405]
Length = 301
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/118 (48%), Positives = 76/118 (64%), Gaps = 1/118 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V K GWTSF V KLR ++K KK+GH GTLDP TG+L V VGKAT+L++ + K Y
Sbjct: 7 VYKEAGWTSFDVVAKLRGILKTKKIGHGGTLDPQVTGVLPVAVGKATRLLEYMEEAGKVY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPW-EHIKDEDIRKAAASFRGEIWQVPPMFSAIKVR 430
G +G +T T DA+ V++ P + DE+I + F GEI QVPPM+SA+KV+
Sbjct: 67 EGEVTIGFSTETEDAEGEVLETTPVPSTLSDEEIDEVMTHFVGEIQQVPPMYSAVKVK 124
>gi|197303050|ref|ZP_03168098.1| hypothetical protein RUMLAC_01777 [Ruminococcus lactaris ATCC
29176]
gi|197297905|gb|EDY32457.1| tRNA pseudouridine synthase B [Ruminococcus lactaris ATCC 29176]
Length = 304
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 75/119 (63%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ V K KG+TS V LR++ KK+GH GTLDP ATG+L VC+G+ATKL D
Sbjct: 4 IINVYKEKGYTSHDVVAVLRKIAGQKKIGHTGTLDPDATGVLPVCLGRATKLCDLLTDRD 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y V LG+ T T D +++ +P +H+ + ++ K SF+G Q+PPM+SA+KV
Sbjct: 64 KTYEAVLLLGKTTDTQDISGAILKEQPTDHLNEAEVTKVIESFKGTYDQIPPMYSALKV 122
>gi|347521890|ref|YP_004779461.1| tRNA pseudouridine synthase B [Lactococcus garvieae ATCC 49156]
gi|385833274|ref|YP_005871049.1| tRNA pseudouridine synthase B [Lactococcus garvieae Lg2]
gi|343180458|dbj|BAK58797.1| tRNA pseudouridine synthase B [Lactococcus garvieae ATCC 49156]
gi|343182427|dbj|BAK60765.1| tRNA pseudouridine synthase B [Lactococcus garvieae Lg2]
Length = 301
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/118 (48%), Positives = 76/118 (64%), Gaps = 1/118 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V K GWTSF V KLR ++K KK+GH GTLDP TG+L V VGKAT+L++ + K Y
Sbjct: 7 VYKEAGWTSFDVVAKLRGILKTKKIGHGGTLDPQVTGVLPVAVGKATRLLEYMEEAGKVY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPW-EHIKDEDIRKAAASFRGEIWQVPPMFSAIKVR 430
G +G +T T DA+ V++ P + DE+I + F GEI QVPPM+SA+KV+
Sbjct: 67 EGEVTIGFSTETEDAEGEVLETTPVPSTLSDEEIDEVMTHFVGEIQQVPPMYSAVKVK 124
>gi|315604469|ref|ZP_07879535.1| tRNA pseudouridine synthase B [Actinomyces sp. oral taxon 180 str.
F0310]
gi|315314175|gb|EFU62226.1| tRNA pseudouridine synthase B [Actinomyces sp. oral taxon 180 str.
F0310]
Length = 356
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 77/126 (61%)
Query: 304 WDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLV 363
D P +++++KP G TS V ++RRL K +KVGH GTLDPMATG+L+V VGKATKL+
Sbjct: 5 CDNPRPGLLVIDKPAGITSHDVVSRVRRLAKTRKVGHGGTLDPMATGVLVVGVGKATKLL 64
Query: 364 DRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPM 423
G K Y R G AT+T DA+ + + ED+ +A A RG+I QVP
Sbjct: 65 TWVSGHSKEYVATIRFGIATNTDDAEGVPTRVRGCSSLSGEDLERALAPLRGDIMQVPTT 124
Query: 424 FSAIKV 429
SAIKV
Sbjct: 125 VSAIKV 130
>gi|184201248|ref|YP_001855455.1| tRNA pseudouridine synthase B [Kocuria rhizophila DC2201]
gi|183581478|dbj|BAG29949.1| tRNA pseudouridine synthase TruB [Kocuria rhizophila DC2201]
Length = 379
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/122 (49%), Positives = 75/122 (61%), Gaps = 3/122 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP GWTS V ++RRL +KVGHAGTLDP A+G+L++ V KATKL+ G
Sbjct: 20 LVVVDKPLGWTSHDVVARMRRLAGTRKVGHAGTLDPAASGVLVIGVEKATKLLTWVTGTD 79
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIK---DEDIRKAAASFRGEIWQVPPMFSAI 427
K Y RLG AT T DA+ V + P E + DE + A A GEI QVP SAI
Sbjct: 80 KTYRAGIRLGAATVTDDAEGDVTRTAPPERLAGTTDEQVLAAVAQLTGEIQQVPSAVSAI 139
Query: 428 KV 429
KV
Sbjct: 140 KV 141
>gi|399888401|ref|ZP_10774278.1| tRNA pseudouridine synthase B [Clostridium arbusti SL206]
Length = 289
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/116 (48%), Positives = 77/116 (66%), Gaps = 1/116 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+ K G TSF V +R+L ++KKVGH GTLDP+ATG+L VC+GKATKLVD K Y
Sbjct: 7 IYKTPGMTSFDVVRSIRKLSRIKKVGHTGTLDPLATGVLPVCLGKATKLVDYIMDDFKIY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
V +LG + T+D + +++ ++ +EDIR A SF G I Q+PPM+SA+KV
Sbjct: 67 DVVLKLGFTSDTYDKEGKIVKGSHI-NVSEEDIRDAINSFIGSIDQIPPMYSALKV 121
>gi|387876895|ref|YP_006307199.1| tRNA pseudouridine synthase B [Mycobacterium sp. MOTT36Y]
gi|386790353|gb|AFJ36472.1| tRNA pseudouridine synthase B [Mycobacterium sp. MOTT36Y]
Length = 296
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 75/119 (63%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP TS V G+ RR+ ++VGHAGTLDPMATG+L++ V +ATK++
Sbjct: 6 IVVVDKPPAMTSHDVVGRCRRIFSTRRVGHAGTLDPMATGVLVIGVERATKILGLLSASS 65
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ RLG++TST DA+ ++ P H+ E I A RG+I QVP SAIKV
Sbjct: 66 KSYAATIRLGQSTSTDDAEGEPVRSVPAGHLTSEAIGTAVEGLRGDIAQVPSTVSAIKV 124
>gi|421878725|ref|ZP_16310203.1| tRNA pseudouridine synthase B [Leuconostoc citreum LBAE C11]
gi|390447421|emb|CCF26323.1| tRNA pseudouridine synthase B [Leuconostoc citreum LBAE C11]
Length = 302
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/132 (45%), Positives = 83/132 (62%), Gaps = 10/132 (7%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++++NKP+G TSF V K+RR + KKVGHAGTLDP +G+L+V +GKATKL+D Q
Sbjct: 10 VIVINKPRGVTSFDVVAKVRRAIGQKKVGHAGTLDPDVSGVLVVALGKATKLIDELQSRP 69
Query: 371 KGYSGVFRLGEATSTWDADSPVIQRE----PWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
K Y G LG AT T D +I + P+ D+ I +A S G I QVPPM+SA
Sbjct: 70 KRYVGDITLGFATETEDLSGEIISEKAITVPYS---DQQIDEAIQSLNGSIQQVPPMYSA 126
Query: 427 IKV---RVFHFS 435
+KV R++ ++
Sbjct: 127 VKVAGKRLYEYA 138
>gi|270290309|ref|ZP_06196534.1| tRNA pseudouridine synthase B [Pediococcus acidilactici 7_4]
gi|418069085|ref|ZP_12706365.1| tRNA pseudouridine synthase B [Pediococcus acidilactici MA18/5M]
gi|270281090|gb|EFA26923.1| tRNA pseudouridine synthase B [Pediococcus acidilactici 7_4]
gi|357537818|gb|EHJ21841.1| tRNA pseudouridine synthase B [Pediococcus acidilactici MA18/5M]
Length = 300
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/120 (45%), Positives = 76/120 (63%), Gaps = 1/120 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ +NK +G TS V K+R +++ KKVGH+GTLDP G+L VCVG+ATK+VD
Sbjct: 4 IIPINKERGMTSHDVVAKVRGILRTKKVGHSGTLDPSVDGVLPVCVGRATKVVDYLMRFG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG AT+T D D V++R+P + D I A GE+ Q+PPM+SA+KV
Sbjct: 64 KTYQGSITLGLATTTEDLDGEVVERQPLSKPLTDAQIDAALKQMTGELTQIPPMYSAVKV 123
>gi|18310665|ref|NP_562599.1| tRNA pseudouridine synthase B [Clostridium perfringens str. 13]
gi|168214484|ref|ZP_02640109.1| tRNA pseudouridine synthase B [Clostridium perfringens CPE str.
F4969]
gi|37089211|sp|Q8XJS1.1|TRUB_CLOPE RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|18145346|dbj|BAB81389.1| tRNA-pseudouridine synthase B [Clostridium perfringens str. 13]
gi|170714037|gb|EDT26219.1| tRNA pseudouridine synthase B [Clostridium perfringens CPE str.
F4969]
Length = 294
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 77/125 (61%), Gaps = 3/125 (2%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+ K G TSF V +RR+ K+KKVGH GTLDP A+G+L VC+GKATK++D K Y
Sbjct: 7 IYKNTGMTSFDVVAMVRRVAKMKKVGHTGTLDPAASGVLPVCLGKATKIIDYIMENKKVY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK---VR 430
+LG T T+D + V++ E HI ++I SF G I QVPPM+SA+K VR
Sbjct: 67 RVNLKLGMVTDTYDLEGEVLREEDASHITKDEILNCINSFVGTIDQVPPMYSALKQNGVR 126
Query: 431 VFHFS 435
++ +
Sbjct: 127 LYELA 131
>gi|150026387|ref|YP_001297213.1| tRNA pseudouridine synthase B [Flavobacterium psychrophilum
JIP02/86]
gi|149772928|emb|CAL44412.1| tRNA pseudouridine synthase B [Flavobacterium psychrophilum
JIP02/86]
Length = 234
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/134 (44%), Positives = 80/134 (59%), Gaps = 10/134 (7%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRR-------LVKVKKVGHAGTLDPMATGLLIVCVGKATK 361
G ++L++KP W+SF KL+ L K K+GHAGTLDP+ATGLLIVC GK TK
Sbjct: 9 GQVLLIDKPLKWSSFQAVNKLKYSLINKLGLPKKFKIGHAGTLDPLATGLLIVCTGKLTK 68
Query: 362 LVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVP 421
+ QG K Y+G F +G T ++D ++ + P HI + I + F GEI Q P
Sbjct: 69 SISEIQGQAKEYTGTFYIGATTPSYDLETQIDATFPIAHITEALIHETVKQFLGEIDQKP 128
Query: 422 PMFSAIK---VRVF 432
P+FSAIK VR++
Sbjct: 129 PVFSAIKKDGVRLY 142
>gi|383115715|ref|ZP_09936470.1| tRNA pseudouridine synthase B [Bacteroides sp. D2]
gi|313694882|gb|EFS31717.1| tRNA pseudouridine synthase B [Bacteroides sp. D2]
Length = 240
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/127 (46%), Positives = 75/127 (59%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ NKP GWTSF V G R R + VKK VGHAGTLDP+ATG++I+C GKATK
Sbjct: 6 GEVLFFNKPFGWTSFKVVGHARYHICRRIGVKKLKVGHAGTLDPLATGVMILCTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y RLG T ++D + + P EHI E + + F G I QVPP
Sbjct: 66 IEEFQYHTKEYVATLRLGATTPSYDLEHEIDATYPTEHITRELVEEVLTHFIGAIDQVPP 125
Query: 423 MFSAIKV 429
FSA V
Sbjct: 126 AFSACMV 132
>gi|170760470|ref|YP_001787726.1| tRNA pseudouridine synthase B [Clostridium botulinum A3 str. Loch
Maree]
gi|169407459|gb|ACA55870.1| tRNA pseudouridine synthase B [Clostridium botulinum A3 str. Loch
Maree]
Length = 289
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/116 (47%), Positives = 77/116 (66%), Gaps = 1/116 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V KPKG TSF V +R++ K+KKVGH GTLDP+ATG+L VC+GKATK+VD K Y
Sbjct: 7 VLKPKGITSFDVVRDIRKIAKIKKVGHTGTLDPLATGVLPVCIGKATKIVDYIIEGTKTY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
+LG T T+D + V++ E + ++ KA ++G+I QVPPM+SA+K+
Sbjct: 67 RVEMKLGTTTDTYDREGTVLE-EKEVSVSSTEVEKAIEKYKGDIEQVPPMYSALKI 121
>gi|110799626|ref|YP_696370.1| tRNA pseudouridine synthase B [Clostridium perfringens ATCC 13124]
gi|168211429|ref|ZP_02637054.1| tRNA pseudouridine synthase B [Clostridium perfringens B str. ATCC
3626]
gi|122958821|sp|Q0TPS0.1|TRUB_CLOP1 RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|110674273|gb|ABG83260.1| tRNA pseudouridine synthase B [Clostridium perfringens ATCC 13124]
gi|170710557|gb|EDT22739.1| tRNA pseudouridine synthase B [Clostridium perfringens B str. ATCC
3626]
Length = 294
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 77/125 (61%), Gaps = 3/125 (2%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+ K G TSF V +RR+ K+KKVGH GTLDP A+G+L VC+GKATK++D K Y
Sbjct: 7 IYKNTGMTSFDVVAIVRRVAKMKKVGHTGTLDPAASGVLPVCLGKATKIIDYIMENKKVY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK---VR 430
+LG T T+D + V++ E HI ++I SF G I QVPPM+SA+K VR
Sbjct: 67 RVNLKLGMVTDTYDLEGEVLREEDASHITKDEILNCINSFLGTIDQVPPMYSALKQNGVR 126
Query: 431 VFHFS 435
++ +
Sbjct: 127 LYELA 131
>gi|429756092|ref|ZP_19288704.1| tRNA pseudouridine synthase B [Capnocytophaga sp. oral taxon 324
str. F0483]
gi|429172034|gb|EKY13617.1| tRNA pseudouridine synthase B [Capnocytophaga sp. oral taxon 324
str. F0483]
Length = 558
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/136 (39%), Positives = 83/136 (61%), Gaps = 9/136 (6%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKKV--GHAGTLDPMATGLLIVCVGKATKL 362
G ++L++KP W+SF K++ R K+KK+ GHAGTLDP+A+GLL++C GK TK
Sbjct: 10 GRILLIDKPLQWSSFQAVNKIKWAILRHYKLKKIKIGHAGTLDPLASGLLVICTGKFTKK 69
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+ Q +K Y+G +G T ++D ++ + P +HI E I + F GE+ Q PP
Sbjct: 70 ITEIQDAVKTYTGTITVGATTPSYDKETEINAHYPTDHITPELIEQVRMQFIGELTQTPP 129
Query: 423 MFSAIK---VRVFHFS 435
+FSAIK R++ F+
Sbjct: 130 VFSAIKKEGKRLYEFA 145
>gi|153807128|ref|ZP_01959796.1| hypothetical protein BACCAC_01405 [Bacteroides caccae ATCC 43185]
gi|149130248|gb|EDM21458.1| tRNA pseudouridine synthase B [Bacteroides caccae ATCC 43185]
Length = 240
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/127 (46%), Positives = 74/127 (58%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ NKP GWTSF V G R R + VKK VGHAGTLDP+ATG++IVC GKATK
Sbjct: 6 GEVLFFNKPLGWTSFKVVGHARYHICRRIGVKKLKVGHAGTLDPLATGVMIVCTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y RLG T ++D + + P HI E + + F G I QVPP
Sbjct: 66 IEEFQYHTKEYVATLRLGATTPSYDLEHEIDATYPTGHITRELVEEVLTHFIGTIEQVPP 125
Query: 423 MFSAIKV 429
FSA V
Sbjct: 126 AFSACMV 132
>gi|421876729|ref|ZP_16308283.1| tRNA pseudouridine synthase B [Leuconostoc citreum LBAE C10]
gi|372557407|emb|CCF24403.1| tRNA pseudouridine synthase B [Leuconostoc citreum LBAE C10]
Length = 302
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/132 (45%), Positives = 83/132 (62%), Gaps = 10/132 (7%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++++NKP+G TSF V K+RR + KKVGHAGTLDP +G+L+V +GKATKL+D Q
Sbjct: 10 VIVINKPRGVTSFDVVAKVRRAIGQKKVGHAGTLDPDVSGVLVVALGKATKLIDELQSRP 69
Query: 371 KGYSGVFRLGEATSTWDADSPVIQRE----PWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
K Y G LG AT T D +I + P+ D+ I +A S G I QVPPM+SA
Sbjct: 70 KRYVGDITLGFATETEDLSGEIISEKAITVPYS---DQQIDEAIQSLNGSIQQVPPMYSA 126
Query: 427 IKV---RVFHFS 435
+KV R++ ++
Sbjct: 127 VKVAGKRLYEYA 138
>gi|168180706|ref|ZP_02615370.1| tRNA pseudouridine synthase B [Clostridium botulinum NCTC 2916]
gi|182668377|gb|EDT80356.1| tRNA pseudouridine synthase B [Clostridium botulinum NCTC 2916]
Length = 289
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/116 (47%), Positives = 77/116 (66%), Gaps = 1/116 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V KPKG TSF V +R++ K+KKVGH GTLDP+A+G+L VC+GKATK+VD K Y
Sbjct: 7 VLKPKGITSFDVVRDIRKIAKIKKVGHTGTLDPLASGVLPVCIGKATKIVDYIMEGTKNY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
+LG T T+D + V+ E + E++ KA ++G+I QVPPM+SA+K+
Sbjct: 67 RVEMKLGTTTDTYDREGTVLG-EKEVSVSPEEVEKAIEKYKGDIEQVPPMYSALKI 121
>gi|420149011|ref|ZP_14656194.1| tRNA pseudouridine(55) synthase [Capnocytophaga sp. oral taxon 335
str. F0486]
gi|394754320|gb|EJF37735.1| tRNA pseudouridine(55) synthase [Capnocytophaga sp. oral taxon 335
str. F0486]
Length = 558
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/136 (39%), Positives = 83/136 (61%), Gaps = 9/136 (6%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKKV--GHAGTLDPMATGLLIVCVGKATKL 362
G ++L++KP W+SF K++ R K+KK+ GHAGTLDP+A+GLL++C GK TK
Sbjct: 10 GRILLIDKPLQWSSFQAVNKIKWAILRHYKLKKIKIGHAGTLDPLASGLLVICTGKFTKK 69
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+ Q +K Y+G +G T ++D ++ + P +HI E I + F GE+ Q PP
Sbjct: 70 ITEIQDAVKTYTGTITVGATTPSYDKETEIDAHYPTDHITPELIEQVRMQFVGELVQTPP 129
Query: 423 MFSAIK---VRVFHFS 435
+FSAIK R++ F+
Sbjct: 130 VFSAIKKEGKRLYEFA 145
>gi|317057649|ref|YP_004106116.1| tRNA pseudouridine synthase B [Ruminococcus albus 7]
gi|315449918|gb|ADU23482.1| tRNA pseudouridine synthase B [Ruminococcus albus 7]
Length = 299
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/119 (48%), Positives = 75/119 (63%), Gaps = 1/119 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ V KP GWTSF V KLR ++ +++GH GTLDPMA G+L V VGKATK D +
Sbjct: 9 VIAVYKPAGWTSFDVVAKLRGILHTRRIGHGGTLDPMAEGVLPVFVGKATKACDILPDVK 68
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
KGY FRLG T T D V+ +E + E+ + AA F G+I QVPPM+SA+KV
Sbjct: 69 KGYHAGFRLGITTDTQDITGTVL-KEDGMAVTAEEFKTAAEKFIGKIMQVPPMYSAVKV 126
>gi|182626360|ref|ZP_02954114.1| tRNA pseudouridine synthase B [Clostridium perfringens D str.
JGS1721]
gi|177908311|gb|EDT70859.1| tRNA pseudouridine synthase B [Clostridium perfringens D str.
JGS1721]
Length = 294
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 77/125 (61%), Gaps = 3/125 (2%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+ K G TSF V +RR+ K+KKVGH GTLDP A+G+L VC+GKATK++D K Y
Sbjct: 7 IYKNTGMTSFDVVAIVRRVAKMKKVGHTGTLDPAASGVLPVCLGKATKIIDYIMENKKVY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK---VR 430
+LG T T+D + V++ E HI ++I SF G I QVPPM+SA+K VR
Sbjct: 67 RVNLKLGMVTDTYDLEGEVLREEDASHITKDEILNCINSFLGTIDQVPPMYSALKQNGVR 126
Query: 431 VFHFS 435
++ +
Sbjct: 127 LYELA 131
>gi|422874604|ref|ZP_16921089.1| tRNA pseudouridine synthase B [Clostridium perfringens F262]
gi|380304245|gb|EIA16534.1| tRNA pseudouridine synthase B [Clostridium perfringens F262]
Length = 294
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 77/125 (61%), Gaps = 3/125 (2%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+ K G TSF V +RR+ K+KKVGH GTLDP A+G+L VC+GKATK++D K Y
Sbjct: 7 IYKNTGMTSFDVVAIVRRVAKMKKVGHTGTLDPAASGVLPVCLGKATKIIDYIMENKKVY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK---VR 430
+LG T T+D + V++ E HI ++I SF G I QVPPM+SA+K VR
Sbjct: 67 RVNLKLGMVTDTYDLEGEVLREEDASHITKDEILNCINSFLGTIDQVPPMYSALKQNGVR 126
Query: 431 VFHFS 435
++ +
Sbjct: 127 LYELA 131
>gi|315648091|ref|ZP_07901192.1| tRNA pseudouridine synthase B [Paenibacillus vortex V453]
gi|315276737|gb|EFU40080.1| tRNA pseudouridine synthase B [Paenibacillus vortex V453]
Length = 303
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 77/119 (64%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ V+KP GWTS V K+R ++++K++GH GTLDP TG+L +C+G+AT++V+ Q +
Sbjct: 7 ILAVHKPAGWTSHDVVAKVRGILRMKRIGHTGTLDPEVTGVLPLCLGRATRVVEYLQELP 66
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y V RLG +T T D V + H+ + +A SF G I QVPPM+SA+K+
Sbjct: 67 KEYHAVLRLGYSTDTEDITGSVTETADEVHVTKNEAIEALQSFMGPISQVPPMYSAVKI 125
>gi|379763067|ref|YP_005349464.1| tRNA pseudouridine synthase B [Mycobacterium intracellulare
MOTT-64]
gi|378811009|gb|AFC55143.1| tRNA pseudouridine synthase B [Mycobacterium intracellulare
MOTT-64]
Length = 301
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 75/119 (63%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP TS V G+ RR+ ++VGHAGTLDPMATG+L++ V +ATK++
Sbjct: 6 IVVVDKPPAMTSHDVVGRCRRIFSTRRVGHAGTLDPMATGVLVIGVERATKILGLLSASS 65
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ RLG++TST DA+ ++ P H+ E I A RG+I QVP SAIKV
Sbjct: 66 KSYAATIRLGQSTSTDDAEGEPVRSVPAGHLTAEAIGTAVEGLRGDIAQVPSTVSAIKV 124
>gi|170754990|ref|YP_001781958.1| tRNA pseudouridine synthase B [Clostridium botulinum B1 str. Okra]
gi|429247606|ref|ZP_19210846.1| tRNA pseudouridine synthase B [Clostridium botulinum CFSAN001628]
gi|169120202|gb|ACA44038.1| tRNA pseudouridine synthase B [Clostridium botulinum B1 str. Okra]
gi|428755351|gb|EKX77982.1| tRNA pseudouridine synthase B [Clostridium botulinum CFSAN001628]
Length = 289
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/116 (46%), Positives = 77/116 (66%), Gaps = 1/116 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V KPKG TSF V +R++ K+KKVGH GTLDP+A+G+L VC+GKATK+VD K Y
Sbjct: 7 VLKPKGITSFDVVRDIRKIAKIKKVGHTGTLDPLASGVLPVCIGKATKIVDYIMEGTKTY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
+LG T T+D + V++ E + ++ KA ++G+I QVPPM+SA+K+
Sbjct: 67 RVEMKLGTTTDTYDREGTVLE-EKEVSVSSTEVEKAIEKYKGDIEQVPPMYSALKI 121
>gi|406031758|ref|YP_006730650.1| Sfp-type phosphopantetheinyl transferase [Mycobacterium indicus
pranii MTCC 9506]
gi|405130305|gb|AFS15560.1| Sfp-type phosphopantetheinyl transferase [Mycobacterium indicus
pranii MTCC 9506]
Length = 301
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 75/119 (63%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP TS V G+ RR+ ++VGHAGTLDPMATG+L++ V +ATK++
Sbjct: 6 IVVVDKPPAMTSHDVVGRCRRIFSTRRVGHAGTLDPMATGVLVIGVERATKILGLLSASS 65
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ RLG++TST DA+ ++ P H+ E I A RG+I QVP SAIKV
Sbjct: 66 KSYAATIRLGQSTSTDDAEGEPVRSVPAGHLTAEAIGTAVEGLRGDIAQVPSTVSAIKV 124
>gi|284992344|ref|YP_003410898.1| tRNA pseudouridine synthase B [Geodermatophilus obscurus DSM 43160]
gi|284065589|gb|ADB76527.1| tRNA pseudouridine synthase B [Geodermatophilus obscurus DSM 43160]
Length = 304
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 75/119 (63%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++LV+KP G TS V + RR++ V++VGHAGTLDPMATGLL++ VG AT+L+ G
Sbjct: 13 LLLVDKPGGMTSHDVVARARRVLSVRRVGHAGTLDPMATGLLVLGVGTATRLLGHVGGHD 72
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y RLG+ T T D + V+ P H+ D+ + A A+ G + QVP SA+KV
Sbjct: 73 KTYEATIRLGQTTVTDDREGEVLVTTPAGHLDDDAVTAALAAQTGPLLQVPSSVSAVKV 131
>gi|427384973|ref|ZP_18881478.1| tRNA pseudouridine synthase B [Bacteroides oleiciplenus YIT 12058]
gi|425728234|gb|EKU91093.1| tRNA pseudouridine synthase B [Bacteroides oleiciplenus YIT 12058]
Length = 233
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/127 (46%), Positives = 76/127 (59%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ NKP WTSF V G R R + VKK VGHAGTLDP+ATG++IVC GKATK
Sbjct: 6 GEVLYFNKPLEWTSFKVVGHARYHICRRIGVKKLKVGHAGTLDPLATGVMIVCTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y +LG T ++D + + P EHI E + + +F GEI QVPP
Sbjct: 66 IEEFQYHTKEYVATIQLGATTPSYDLEHEIDATYPTEHITRELVEETLKTFIGEIQQVPP 125
Query: 423 MFSAIKV 429
FSA V
Sbjct: 126 AFSACMV 132
>gi|294790402|ref|ZP_06755560.1| tRNA pseudouridine synthase B [Scardovia inopinata F0304]
gi|294458299|gb|EFG26652.1| tRNA pseudouridine synthase B [Scardovia inopinata F0304]
Length = 358
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/120 (48%), Positives = 78/120 (65%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++LV+KP+G TS V R L+ + VGHAGTLDPMATGLLI+ GKAT+L+
Sbjct: 28 ILLVDKPQGVTSHDVVAAARSLLGTRHVGHAGTLDPMATGLLILGYGKATRLLSLITRAD 87
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVR 430
K Y V RLG+AT+T DA+ V+ + P + D I++A++ G I QVP +SAIKVR
Sbjct: 88 KTYQTVIRLGQATTTDDAEGSVVSQGPVSSLTDRIIQEASSRLTGTIDQVPSSYSAIKVR 147
>gi|389865980|ref|YP_006368221.1| tRNA pseudouridine synthase B [Modestobacter marinus]
gi|388488184|emb|CCH89755.1| tRNA pseudouridine synthase B [Modestobacter marinus]
Length = 306
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/120 (45%), Positives = 76/120 (63%)
Query: 310 TMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGM 369
+++LV+KP G TS V RR++ V+KVGHAGTLDPMATGLL++ VG AT+L+ G
Sbjct: 13 SLLLVDKPAGMTSHDVVAVARRVLSVRKVGHAGTLDPMATGLLVLGVGAATRLLGHLSGS 72
Query: 370 IKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y RLG++T T DA+ V + ++D+R A A+ G + QVP SA+KV
Sbjct: 73 DKTYDATVRLGQSTVTDDAEGEVTATTSAAGVGEDDVRAALAAQVGALQQVPSSVSAVKV 132
>gi|443306688|ref|ZP_21036476.1| tRNA pseudouridine synthase B [Mycobacterium sp. H4Y]
gi|442768252|gb|ELR86246.1| tRNA pseudouridine synthase B [Mycobacterium sp. H4Y]
Length = 296
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 75/119 (63%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP TS V G+ RR+ ++VGHAGTLDPMATG+L++ V +ATK++
Sbjct: 6 IVVVDKPPAMTSHDVVGRCRRIFSTRRVGHAGTLDPMATGVLVIGVERATKILGLLSASS 65
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ RLG++TST DA+ ++ P H+ E I A RG+I QVP SAIKV
Sbjct: 66 KSYAATIRLGQSTSTDDAEGEPVRSVPAGHLTAEAIGTAVEGLRGDIAQVPSTVSAIKV 124
>gi|225164874|ref|ZP_03727095.1| tRNA pseudouridine synthase B [Diplosphaera colitermitum TAV2]
gi|224800523|gb|EEG18898.1| tRNA pseudouridine synthase B [Diplosphaera colitermitum TAV2]
Length = 242
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 78/119 (65%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP TS V +LR ++++K++GHAGTLDPMATGLLIV VGKAT L
Sbjct: 11 VLLIDKPTDHTSHDVIARLRGILRMKRIGHAGTLDPMATGLLIVLVGKATSLSQYLMSAD 70
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K YSG LG+ T+T DA+ +++ P + + + A + G+ +Q+PPMFSAIK+
Sbjct: 71 KEYSGTITLGKTTNTQDAEGEMLETRPVPPLSEAQVAAAMRAMLGDQYQMPPMFSAIKI 129
>gi|425736866|ref|ZP_18855142.1| tRNA pseudouridine synthase B [Staphylococcus massiliensis S46]
gi|425483338|gb|EKU50490.1| tRNA pseudouridine synthase B [Staphylococcus massiliensis S46]
Length = 305
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 74/119 (62%), Gaps = 2/119 (1%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
VNKPKG TS V KLR+++K KKVGH GTLDP TG+L VC+G ATK+ + M K Y
Sbjct: 8 VNKPKGLTSHDVVFKLRKILKTKKVGHTGTLDPEVTGVLPVCIGSATKVSEYIMEMGKTY 67
Query: 374 SGVFRLGEATSTWDADSPVIQREPWE--HIKDEDIRKAAASFRGEIWQVPPMFSAIKVR 430
+G++T+T D V+ E E +E I ASF GE Q+PPM+S++KV+
Sbjct: 68 RATIAVGQSTTTEDQTGDVLDSEAIEVDAFSNETIDDVLASFLGETTQIPPMYSSVKVK 126
>gi|298207495|ref|YP_003715674.1| tRNA pseudouridine synthase [Croceibacter atlanticus HTCC2559]
gi|83850131|gb|EAP87999.1| putative tRNA pseudouridine synthase [Croceibacter atlanticus
HTCC2559]
Length = 238
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/133 (42%), Positives = 81/133 (60%), Gaps = 9/133 (6%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLV------KVKKVGHAGTLDPMATGLLIVCVGKATKL 362
G ++L++KP WTSF V K+R ++ K KVGHAGTLDP+ATGLL++C GK TK
Sbjct: 14 GQVLLLDKPLEWTSFQVVNKVRWMIRKSCDIKKIKVGHAGTLDPLATGLLLICTGKFTKT 73
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ G K Y+G LG T ++D ++ V + HI + I A F G+I Q PP
Sbjct: 74 INELMGQEKEYTGTITLGATTPSYDLETVVNENFDISHITADLIHNTTAQFTGDILQQPP 133
Query: 423 MFSAIK---VRVF 432
+FSA+K VR++
Sbjct: 134 IFSALKKDGVRLY 146
>gi|291514903|emb|CBK64113.1| tRNA pseudouridine synthase B [Alistipes shahii WAL 8301]
Length = 238
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 78/126 (61%), Gaps = 5/126 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGK----LRRLVKVK-KVGHAGTLDPMATGLLIVCVGKATKLV 363
G + +V+KP WTS V K LRRL K KVGHAGTLDP+ATG+L+VC+G+ATKLV
Sbjct: 15 GYIAVVDKPLRWTSTDVVRKIKFALRRLGYRKIKVGHAGTLDPLATGILLVCIGRATKLV 74
Query: 364 DRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPM 423
D Q K Y LG T + D + + + PWEHI E + +A AS GE Q PP+
Sbjct: 75 DALQAEEKEYVADVMLGATTPSHDLEHEIDRTYPWEHITREAVAEALASLTGERLQTPPV 134
Query: 424 FSAIKV 429
+SA K+
Sbjct: 135 YSAKKI 140
>gi|160888112|ref|ZP_02069115.1| hypothetical protein BACUNI_00520 [Bacteroides uniformis ATCC 8492]
gi|270295139|ref|ZP_06201340.1| tRNA pseudouridine synthase B [Bacteroides sp. D20]
gi|317478137|ref|ZP_07937312.1| tRNA pseudouridine synthase B [Bacteroides sp. 4_1_36]
gi|156862423|gb|EDO55854.1| tRNA pseudouridine synthase B [Bacteroides uniformis ATCC 8492]
gi|270274386|gb|EFA20247.1| tRNA pseudouridine synthase B [Bacteroides sp. D20]
gi|316905735|gb|EFV27514.1| tRNA pseudouridine synthase B [Bacteroides sp. 4_1_36]
Length = 235
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 75/127 (59%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ NKP GWTSF V G R R +K KK VGHAGTLDP+ATG++IVC GKATK
Sbjct: 6 GEVLYFNKPLGWTSFKVVGHARYHICRRIKEKKLKVGHAGTLDPLATGVMIVCTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y RLG T ++D + + P EHI + + F GEI QVPP
Sbjct: 66 IEEFQYHTKEYVATIRLGATTPSYDLEHEIDATYPTEHITRGLVEETLKKFIGEIQQVPP 125
Query: 423 MFSAIKV 429
FSA V
Sbjct: 126 AFSACMV 132
>gi|377573807|ref|ZP_09802860.1| tRNA pseudouridine synthase B [Mobilicoccus pelagius NBRC 104925]
gi|377537539|dbj|GAB48025.1| tRNA pseudouridine synthase B [Mobilicoccus pelagius NBRC 104925]
Length = 359
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/132 (45%), Positives = 76/132 (57%), Gaps = 7/132 (5%)
Query: 301 PPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKAT 360
P DG +++V+KP GWTS V G RRL +KVGHAGTLDPMATG+L+V V KAT
Sbjct: 7 PTVGDG----LLVVDKPAGWTSHQVVGACRRLAGTRKVGHAGTLDPMATGVLVVGVNKAT 62
Query: 361 KLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPW---EHIKDEDIRKAAASFRGEI 417
+L+ G K YS RLG AT T DA+ P + + DE + A G++
Sbjct: 63 RLLTYLVGADKTYSATIRLGVATMTDDAEGVATAVAPAGAVDALTDEALDAAVGDLTGDL 122
Query: 418 WQVPPMFSAIKV 429
QVP SAIK+
Sbjct: 123 TQVPSTVSAIKI 134
>gi|219854672|ref|YP_002471794.1| hypothetical protein CKR_1329 [Clostridium kluyveri NBRC 12016]
gi|219568396|dbj|BAH06380.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 290
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/116 (49%), Positives = 77/116 (66%), Gaps = 1/116 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+NKP+G TSF V K+R ++K +KVGH GTLDPMA+G+L +CVG+ATK D K Y
Sbjct: 8 INKPEGMTSFDVVRKVRFMLKNEKVGHTGTLDPMASGVLPICVGRATKFADYMVESKKIY 67
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
RLG T T+D + V+ ++K +DI + SF+GEI QVPPM+SA+KV
Sbjct: 68 LAELRLGITTETYDREGSVVNTRGV-YLKKKDIIEEILSFQGEIEQVPPMYSALKV 122
>gi|340750144|ref|ZP_08686991.1| tRNA pseudouridine synthase B [Fusobacterium mortiferum ATCC 9817]
gi|229419791|gb|EEO34838.1| tRNA pseudouridine synthase B [Fusobacterium mortiferum ATCC 9817]
Length = 285
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 77/119 (64%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ +NKP G TSF V LRR++K K++GH GTLDP+A G+L+VC+G+AT+LV +G
Sbjct: 4 IININKPSGITSFDVIRVLRRVLKEKRIGHTGTLDPLAEGVLVVCLGRATRLVQDIEGYS 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ F LG T T+D + I+ + +++ F G+I Q+PPM+SA+KV
Sbjct: 64 KIYTAGFELGYRTDTYDIEGKTIEESEKKSATRDELDIVLKKFIGDIKQIPPMYSALKV 122
>gi|153954059|ref|YP_001394824.1| tRNA pseudouridine synthase B [Clostridium kluyveri DSM 555]
gi|189036464|sp|A5N845.1|TRUB_CLOK5 RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|146346940|gb|EDK33476.1| TruB [Clostridium kluyveri DSM 555]
Length = 289
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/116 (49%), Positives = 77/116 (66%), Gaps = 1/116 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+NKP+G TSF V K+R ++K +KVGH GTLDPMA+G+L +CVG+ATK D K Y
Sbjct: 7 INKPEGMTSFDVVRKVRFMLKNEKVGHTGTLDPMASGVLPICVGRATKFADYMVESKKIY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
RLG T T+D + V+ ++K +DI + SF+GEI QVPPM+SA+KV
Sbjct: 67 LAELRLGITTETYDREGSVVNTRGV-YLKKKDIIEEILSFQGEIEQVPPMYSALKV 121
>gi|119717412|ref|YP_924377.1| tRNA pseudouridine synthase B [Nocardioides sp. JS614]
gi|119538073|gb|ABL82690.1| tRNA pseudouridine synthase B [Nocardioides sp. JS614]
Length = 289
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 74/119 (62%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V ++RRL +KVGHAGTLDPMATG+L++ + +AT+L+
Sbjct: 8 LVVVDKPGGLTSHDVVSRVRRLTGTRKVGHAGTLDPMATGVLVLGINRATRLLGHLMLTE 67
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y RLG ATST DA+ V + + +R AAA F G++ QVP SAIKV
Sbjct: 68 KAYDATIRLGVATSTDDAEGEVTATASAAGLDEATVRAAAAEFVGDLLQVPTAVSAIKV 126
>gi|110803856|ref|YP_698970.1| tRNA pseudouridine synthase B [Clostridium perfringens SM101]
gi|123047320|sp|Q0SSD7.1|TRUB_CLOPS RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|110684357|gb|ABG87727.1| tRNA pseudouridine synthase B [Clostridium perfringens SM101]
Length = 294
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 77/125 (61%), Gaps = 3/125 (2%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+ K G TSF V +RR+ K+KKVGH GTLDP A+G+L VC+GKATK++D K Y
Sbjct: 7 IYKNTGMTSFDVVAMVRRVAKMKKVGHTGTLDPEASGVLPVCLGKATKIIDYIMENKKVY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK---VR 430
+LG T T+D + V++ E HI ++I SF G I QVPPM+SA+K VR
Sbjct: 67 RVNLKLGMVTDTYDLEGEVLREEDASHITKDEILNCINSFVGTIDQVPPMYSALKQNGVR 126
Query: 431 VFHFS 435
++ +
Sbjct: 127 LYELA 131
>gi|256820799|ref|YP_003142078.1| tRNA pseudouridine synthase B [Capnocytophaga ochracea DSM 7271]
gi|256582382|gb|ACU93517.1| tRNA pseudouridine synthase B [Capnocytophaga ochracea DSM 7271]
Length = 558
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 83/137 (60%), Gaps = 11/137 (8%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR-------RLVKVKKVGHAGTLDPMATGLLIVCVGKATK 361
G ++L++KP W+SF K++ +L K+K +GHAGTLDP+A+GLL++C GK TK
Sbjct: 10 GRILLIDKPLQWSSFQAVNKIKWAILKHYKLKKIK-IGHAGTLDPLASGLLVICTGKFTK 68
Query: 362 LVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVP 421
+ Q +K Y+G +G T ++D ++ + P +HI E I + F GE+ Q P
Sbjct: 69 KITEIQDAVKTYTGTITVGATTPSYDKETEINAHYPTDHITPELIEQVRMQFIGELTQTP 128
Query: 422 PMFSAIK---VRVFHFS 435
P+FSAIK R++ F+
Sbjct: 129 PVFSAIKKEGKRLYEFA 145
>gi|310823417|ref|YP_003955775.1| tRNA pseudouridine synthase b [Stigmatella aurantiaca DW4/3-1]
gi|309396489|gb|ADO73948.1| tRNA pseudouridine synthase B [Stigmatella aurantiaca DW4/3-1]
Length = 289
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/119 (47%), Positives = 74/119 (62%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+KP G TSF V ++R L+KVKKVGH GTLDPMATG+L +C+G+ATK+
Sbjct: 4 VLVVDKPSGPTSFDVVRQVRTLLKVKKVGHTGTLDPMATGVLPICLGEATKVAGFVTEGD 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y LG T T DA+ V+ P + + A A FRG QVPPMFSA+KV
Sbjct: 64 KAYEATVHLGVETDTQDAEGKVLAEAPVPPLTGALVESALAPFRGTFEQVPPMFSAVKV 122
>gi|326333606|ref|ZP_08199845.1| tRNA pseudouridine synthase B [Nocardioidaceae bacterium Broad-1]
gi|325948622|gb|EGD40723.1| tRNA pseudouridine synthase B [Nocardioidaceae bacterium Broad-1]
Length = 289
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 78/119 (65%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V ++RRL +KVGHAGTLDPMATG+L++ V +AT+L+
Sbjct: 6 LVIVDKPAGVTSHDVVARVRRLAGTRKVGHAGTLDPMATGVLVLGVERATRLLGHLMLTE 65
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K YS RLG +T+T DA+ V++ + +E +R A A+ G+I QVP + SAIKV
Sbjct: 66 KAYSATVRLGVSTTTDDAEGEVVETRSAADLDEERVRSAFAAQVGDILQVPTVVSAIKV 124
>gi|337750000|ref|YP_004644162.1| tRNA pseudouridine synthase B [Paenibacillus mucilaginosus KNP414]
gi|379722851|ref|YP_005314982.1| tRNA pseudouridine synthase B [Paenibacillus mucilaginosus 3016]
gi|336301189|gb|AEI44292.1| tRNA pseudouridine synthase B [Paenibacillus mucilaginosus KNP414]
gi|378571523|gb|AFC31833.1| tRNA pseudouridine synthase B [Paenibacillus mucilaginosus 3016]
Length = 305
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/118 (47%), Positives = 78/118 (66%), Gaps = 2/118 (1%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V KP G+TS V K+RR++K+K++GH GTLDP TG+L +C+G+AT+LV+ Q + K Y
Sbjct: 9 VWKPAGFTSHDVVAKVRRILKIKRIGHTGTLDPQVTGVLPLCIGRATRLVEYIQELPKEY 68
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIK--DEDIRKAAASFRGEIWQVPPMFSAIKV 429
RLG AT T D V++ E +K E++ +A F GEI QVPPM+SA+KV
Sbjct: 69 EATLRLGIATDTEDLSGSVLRTEDGLSLKLTPEEVTEAIHRFTGEIEQVPPMYSAVKV 126
>gi|402832338|ref|ZP_10880988.1| tRNA pseudouridine(55) synthase [Capnocytophaga sp. CM59]
gi|402277613|gb|EJU26686.1| tRNA pseudouridine(55) synthase [Capnocytophaga sp. CM59]
Length = 237
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/126 (43%), Positives = 77/126 (61%), Gaps = 6/126 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK------KVGHAGTLDPMATGLLIVCVGKATKL 362
GT++L++KP W+SF KL+ + K K+GHAGTLDP+ATGLLI+C GK TK
Sbjct: 7 GTIILIDKPLHWSSFQAVNKLKWAIMKKYRLKKFKIGHAGTLDPLATGLLILCTGKHTKQ 66
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+ + Q K Y+G LG T ++D ++ + P EHI E I + F G++ Q PP
Sbjct: 67 IPQIQDAPKIYTGTIALGATTPSYDLETEIDATFPTEHITPELIEQVREQFVGDLIQAPP 126
Query: 423 MFSAIK 428
+FSAIK
Sbjct: 127 LFSAIK 132
>gi|410460719|ref|ZP_11314393.1| tRNA pseudouridine synthase B [Bacillus azotoformans LMG 9581]
gi|409926773|gb|EKN63927.1| tRNA pseudouridine synthase B [Bacillus azotoformans LMG 9581]
Length = 301
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/124 (45%), Positives = 79/124 (63%), Gaps = 4/124 (3%)
Query: 316 KPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSG 375
KP+G TS K+R+L+K KKVGH GTLDP G+L +CVG+ATK+ + K Y G
Sbjct: 9 KPRGMTSHDCVFKIRKLLKTKKVGHTGTLDPDVDGVLPICVGRATKVAEYLTESQKAYGG 68
Query: 376 VFRLGEATSTWDADSPVIQREP-WEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV---RV 431
+G AT+T DA V++++P I E++++ F GEI QVPPMFSA+KV R+
Sbjct: 69 EVTIGTATTTEDASGEVVEKKPIIGQITIEELKEVLHGFHGEITQVPPMFSAVKVNGKRL 128
Query: 432 FHFS 435
+ F+
Sbjct: 129 YEFA 132
>gi|238063389|ref|ZP_04608098.1| tRNA pseudouridine synthase B [Micromonospora sp. ATCC 39149]
gi|237885200|gb|EEP74028.1| tRNA pseudouridine synthase B [Micromonospora sp. ATCC 39149]
Length = 300
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/119 (48%), Positives = 80/119 (67%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+KP G TS V ++RRL + ++VGH GTLDPMATG+L++ VG+AT+L+ G
Sbjct: 12 LIVVDKPGGMTSHDVVARIRRLARTRRVGHGGTLDPMATGVLVIGVGRATRLLTYVIGAG 71
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ R G+AT T DA+ VI P + + DE IR A A+F GEI QVP SAIK+
Sbjct: 72 KSYTATVRFGQATVTDDAEGDVISATPADAVADEAIRSAFAAFAGEIDQVPSAVSAIKI 130
>gi|405980465|ref|ZP_11038804.1| tRNA pseudouridine synthase B [Actinomyces turicensis
ACS-279-V-Col4]
gi|404390458|gb|EJZ85527.1| tRNA pseudouridine synthase B [Actinomyces turicensis
ACS-279-V-Col4]
Length = 342
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 71/119 (59%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+++KP G TS V K+RR+ +KVGH GTLDPMATG+L++ +G+AT+L+
Sbjct: 12 IVIIDKPAGMTSHDVVSKMRRVAHTRKVGHGGTLDPMATGVLVIGIGQATRLLTYITAGS 71
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y R G A +T DA I E + E + A AS RGEI QVP SAIKV
Sbjct: 72 KAYDATIRFGVAMTTDDAQGQPISIAGCEQLDREALESAMASLRGEIMQVPATVSAIKV 130
>gi|423304442|ref|ZP_17282441.1| tRNA pseudouridine synthase B [Bacteroides uniformis CL03T00C23]
gi|423310444|ref|ZP_17288428.1| tRNA pseudouridine synthase B [Bacteroides uniformis CL03T12C37]
gi|392681615|gb|EIY74972.1| tRNA pseudouridine synthase B [Bacteroides uniformis CL03T12C37]
gi|392684771|gb|EIY78094.1| tRNA pseudouridine synthase B [Bacteroides uniformis CL03T00C23]
Length = 252
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 75/127 (59%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ NKP GWTSF V G R R +K KK VGHAGTLDP+ATG++IVC GKATK
Sbjct: 23 GEVLYFNKPLGWTSFKVVGHARYHICRRIKEKKLKVGHAGTLDPLATGVMIVCTGKATKR 82
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y RLG T ++D + + P EHI + + F GEI QVPP
Sbjct: 83 IEEFQYHTKEYVATIRLGATTPSYDLEHEIDATYPTEHITRGLVEETLKKFIGEIQQVPP 142
Query: 423 MFSAIKV 429
FSA V
Sbjct: 143 AFSACMV 149
>gi|158313038|ref|YP_001505546.1| tRNA pseudouridine synthase B [Frankia sp. EAN1pec]
gi|158108443|gb|ABW10640.1| tRNA pseudouridine synthase B [Frankia sp. EAN1pec]
Length = 313
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/153 (40%), Positives = 86/153 (56%), Gaps = 7/153 (4%)
Query: 279 VPNKENEVGSGEPYIVSRST--ELPPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVK 336
+P+ E +G P R T E P DG +V+V+KP GWTS V + RRL+ +
Sbjct: 1 MPSSERPTAAGRPTAAGRPTAAERPAAVDG----LVVVDKPAGWTSHDVVARSRRLLGTR 56
Query: 337 KVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQRE 396
++GHAGTLDPMATG+L++ VG+ T+L+ R K Y RLG T+T DA+ +
Sbjct: 57 RIGHAGTLDPMATGVLVLGVGRGTRLLGRLALTAKVYEATIRLGRTTTTDDAEGDPVADR 116
Query: 397 PWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
P + + + A A GEI QVP SA+KV
Sbjct: 117 PVD-VGAGPLAAAMAELTGEIDQVPSSVSAVKV 148
>gi|386725628|ref|YP_006191954.1| tRNA pseudouridine synthase B [Paenibacillus mucilaginosus K02]
gi|384092753|gb|AFH64189.1| tRNA pseudouridine synthase B [Paenibacillus mucilaginosus K02]
Length = 305
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/118 (47%), Positives = 78/118 (66%), Gaps = 2/118 (1%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V KP G+TS V K+RR++K+K++GH GTLDP TG+L +C+G+AT+LV+ Q + K Y
Sbjct: 9 VWKPAGFTSHDVVAKVRRILKIKRIGHTGTLDPQVTGVLPLCIGRATRLVEYIQELPKEY 68
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIK--DEDIRKAAASFRGEIWQVPPMFSAIKV 429
RLG AT T D V++ E +K E++ +A F GEI QVPPM+SA+KV
Sbjct: 69 EATLRLGIATDTEDLSGSVLRTEDGLSLKLTPEEVTEAIHRFTGEIEQVPPMYSAVKV 126
>gi|156522754|ref|YP_001429528.1| hypothetical protein pK214_p15 [Lactococcus lactis subsp. lactis
K214]
gi|2467224|emb|CAA63512.1| hypothetical protein [Lactococcus lactis subsp. lactis K214]
Length = 177
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/118 (49%), Positives = 76/118 (64%), Gaps = 1/118 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V K GWTSF V KLR ++K KK+GH GTLDP TG+L V VGKAT+L++ + K Y
Sbjct: 7 VYKEAGWTSFDVVAKLRGILKTKKIGHGGTLDPQVTGVLPVAVGKATRLLEYMEEAGKVY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPW-EHIKDEDIRKAAASFRGEIWQVPPMFSAIKVR 430
G +G +T T DA+ VI+ P + DE+I + F GEI QVPPM+SA+KV+
Sbjct: 67 EGEVTIGFSTETEDAEGEVIETTPVPSTLSDEEIDEVMTRFVGEIQQVPPMYSAVKVK 124
>gi|223936322|ref|ZP_03628234.1| tRNA pseudouridine synthase B [bacterium Ellin514]
gi|223894840|gb|EEF61289.1| tRNA pseudouridine synthase B [bacterium Ellin514]
Length = 236
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 76/121 (62%)
Query: 308 FGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQ 367
F +L++KP G+TS V +RR ++KKVGH GTLDP ATGLLI+ +G+ TKL +R
Sbjct: 7 FDGALLIDKPVGYTSHDVVDAIRRRFQIKKVGHCGTLDPNATGLLIIVLGRGTKLSERLM 66
Query: 368 GMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAI 427
K Y G + GE T ++DAD ++ P + ++ + AA+F G+ QVPPM SAI
Sbjct: 67 SSDKVYEGTIKFGETTDSYDADGELVTSLPVPPMTLGELNETAAAFVGDQMQVPPMVSAI 126
Query: 428 K 428
K
Sbjct: 127 K 127
>gi|159903942|ref|YP_001551286.1| tRNA pseudouridine 55 synthase [Prochlorococcus marinus str. MIT
9211]
gi|159889118|gb|ABX09332.1| Putative tRNA pseudouridine 55 synthase [Prochlorococcus marinus
str. MIT 9211]
Length = 309
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 80/125 (64%), Gaps = 2/125 (1%)
Query: 305 DGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVD 364
D FG +V ++KP G TS +LR+++++K+VGH GTLDP+ TG+L + +GKAT+L+
Sbjct: 2 DAKFGFLV-IDKPAGVTSHDCVSRLRKILRIKRVGHGGTLDPLVTGVLPIAIGKATRLLP 60
Query: 365 RYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMF 424
Y K Y G +LGE T+T D + I+ PW + + D+ K FRG I+Q PP+F
Sbjct: 61 -YLHTSKKYQGTIQLGERTNTDDLEGETIKSSPWPQLSEADLDKFLDLFRGRIFQEPPLF 119
Query: 425 SAIKV 429
S++ +
Sbjct: 120 SSVHI 124
>gi|336321176|ref|YP_004601144.1| tRNA pseudouridine synthase B [[Cellvibrio] gilvus ATCC 13127]
gi|336104757|gb|AEI12576.1| tRNA pseudouridine synthase B [[Cellvibrio] gilvus ATCC 13127]
Length = 321
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 79/135 (58%), Gaps = 7/135 (5%)
Query: 301 PPTWD------GPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIV 354
PP D P G V+V+K +G TS V ++RRL +KVGHAGTLDPMATG+L+V
Sbjct: 4 PPAADRPRRPTAPDG-FVVVDKLQGLTSHDVVARMRRLAGTRKVGHAGTLDPMATGVLVV 62
Query: 355 CVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFR 414
+G+ATKL+ G K Y RLG T+T DA+ V+ H+ +D+ AA +
Sbjct: 63 GIGRATKLLTYVVGADKEYRATIRLGVTTTTEDAEGDVVAVVDAGHVTLQDVAAAARTLT 122
Query: 415 GEIWQVPPMFSAIKV 429
G + QVP SAIKV
Sbjct: 123 GAVLQVPSAVSAIKV 137
>gi|357061057|ref|ZP_09121818.1| tRNA pseudouridine synthase B [Alloprevotella rava F0323]
gi|355375282|gb|EHG22570.1| tRNA pseudouridine synthase B [Alloprevotella rava F0323]
Length = 261
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 79/127 (62%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK------KVGHAGTLDPMATGLLIVCVGKATKL 362
G ++ +KP TSF+ G LR L+ + +VGHAGTLDP+ATG LI+C G+AT++
Sbjct: 6 GKILAFDKPYRATSFSEVGHLRWLLTKRMTGCKIRVGHAGTLDPLATGTLIICTGRATRI 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ Q K Y RLGE T+++D + PV Q P EHI + +R+ S G+I Q+PP
Sbjct: 66 IESLQTHTKEYIAEVRLGETTASYDLEHPVDQTYPTEHITEAMVREVLHSLEGDIMQIPP 125
Query: 423 MFSAIKV 429
+SA K+
Sbjct: 126 AYSACKI 132
>gi|298492414|ref|YP_003722591.1| tRNA pseudouridine synthase B ['Nostoc azollae' 0708]
gi|298234332|gb|ADI65468.1| tRNA pseudouridine synthase B ['Nostoc azollae' 0708]
Length = 291
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 53/116 (45%), Positives = 77/116 (66%), Gaps = 1/116 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+NKP GWTS ++R+L+++K+VGHAGTLDP ATG+L++ +GKAT+L+ G K Y
Sbjct: 7 LNKPYGWTSHDCVARVRKLLRLKRVGHAGTLDPAATGILLIALGKATRLLQYLPGE-KAY 65
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
RLG T+T D + VI +P + DI+ A + F G+I Q+PP +SAI+V
Sbjct: 66 QATVRLGVRTTTDDLEGEVITSQPCAGLSLADIKTALSQFIGKIEQIPPSYSAIQV 121
>gi|315223942|ref|ZP_07865787.1| tRNA pseudouridine synthase B [Capnocytophaga ochracea F0287]
gi|420158760|ref|ZP_14665574.1| tRNA pseudouridine(55) synthase [Capnocytophaga ochracea str. Holt
25]
gi|314946114|gb|EFS98118.1| tRNA pseudouridine synthase B [Capnocytophaga ochracea F0287]
gi|394763247|gb|EJF45367.1| tRNA pseudouridine(55) synthase [Capnocytophaga ochracea str. Holt
25]
Length = 559
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 83/137 (60%), Gaps = 11/137 (8%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR-------RLVKVKKVGHAGTLDPMATGLLIVCVGKATK 361
G ++L++KP W+SF K++ +L K+K +GHAGTLDP+A+GLL++C GK TK
Sbjct: 10 GRILLIDKPLQWSSFQAVNKIKWAILKHYKLKKIK-IGHAGTLDPLASGLLVICTGKFTK 68
Query: 362 LVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVP 421
+ Q +K Y+G +G T ++D ++ + P +HI E I + F GE+ Q P
Sbjct: 69 KITEIQDTVKTYTGTITVGATTPSYDKETEIDAHYPTDHITPELIEQVRMQFIGELVQTP 128
Query: 422 PMFSAIK---VRVFHFS 435
P+FSAIK R++ F+
Sbjct: 129 PVFSAIKKEGKRLYEFA 145
>gi|422346353|ref|ZP_16427267.1| tRNA pseudouridine synthase B [Clostridium perfringens WAL-14572]
gi|373225898|gb|EHP48225.1| tRNA pseudouridine synthase B [Clostridium perfringens WAL-14572]
Length = 294
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 76/125 (60%), Gaps = 3/125 (2%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+ K G TSF V +RR+ K+KKVGH GTLDP A+G+L VC+GKATK++D K Y
Sbjct: 7 IYKNTGMTSFDVVAMVRRVAKMKKVGHTGTLDPAASGVLPVCLGKATKIIDYIMENKKVY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK---VR 430
+LG T T+D + V++ E HI + I SF G I QVPPM+SA+K VR
Sbjct: 67 RVNLKLGMVTDTYDLEGEVLREEDASHITKDKILNCINSFVGTIDQVPPMYSALKQNGVR 126
Query: 431 VFHFS 435
++ +
Sbjct: 127 LYELA 131
>gi|255693343|ref|ZP_05417018.1| tRNA pseudouridine synthase B [Bacteroides finegoldii DSM 17565]
gi|260620919|gb|EEX43790.1| tRNA pseudouridine synthase B [Bacteroides finegoldii DSM 17565]
Length = 240
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 59/127 (46%), Positives = 74/127 (58%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ NKP GWTSF V G R R + VKK VGHAGTLDP+ATG++IVC GKATK
Sbjct: 6 GEVLFFNKPLGWTSFKVVGHARYHICRRIGVKKLKVGHAGTLDPLATGVMIVCTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y RLG T ++D + + EHI E + + F G I QVPP
Sbjct: 66 IEEFQYHTKEYIATLRLGATTPSYDLEHEIDATYSTEHITREMVEEVLTHFIGTIEQVPP 125
Query: 423 MFSAIKV 429
FSA V
Sbjct: 126 AFSACMV 132
>gi|451812261|ref|YP_007448715.1| tRNA pseudouridine synthase B [Candidatus Kinetoplastibacterium
galatii TCC219]
gi|451778163|gb|AGF49111.1| tRNA pseudouridine synthase B [Candidatus Kinetoplastibacterium
galatii TCC219]
Length = 237
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/126 (47%), Positives = 74/126 (58%), Gaps = 5/126 (3%)
Query: 304 WDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLV 363
DG F L++KP G TS K+RR + +KK GH GTLDP ATGLL+ C GKATK
Sbjct: 6 LDGFF----LLDKPAGITSNLALQKVRRFLNIKKAGHTGTLDPFATGLLVCCFGKATKKS 61
Query: 364 DRYQGMIKGYSGVFRLGEATSTWDADSPVIQREP-WEHIKDEDIRKAAASFRGEIWQVPP 422
+ + K Y +LGE T T D VI++ ++ I I KA SF GEI QVPP
Sbjct: 62 NIFLNASKSYIATIKLGEETDTGDLTGKVIKKSSDFKFIDASSIEKALISFIGEIDQVPP 121
Query: 423 MFSAIK 428
M+SAIK
Sbjct: 122 MYSAIK 127
>gi|187778992|ref|ZP_02995465.1| hypothetical protein CLOSPO_02587 [Clostridium sporogenes ATCC
15579]
gi|187772617|gb|EDU36419.1| tRNA pseudouridine synthase B [Clostridium sporogenes ATCC 15579]
Length = 289
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 55/116 (47%), Positives = 77/116 (66%), Gaps = 1/116 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V KPKG TSF V +R++ K+KKVGH GTLDP+A+G+L VC+GKATK+VD K Y
Sbjct: 7 VLKPKGITSFDVVRDIRKIAKIKKVGHTGTLDPLASGVLPVCIGKATKIVDYIMEGTKTY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
+LG T T+D + V++ E + ++ KA ++G+I QVPPM+SA+KV
Sbjct: 67 RVEMKLGTTTDTYDREGTVLE-EKEVSVSPTEVEKAIEKYKGDIKQVPPMYSALKV 121
>gi|393779618|ref|ZP_10367856.1| tRNA pseudouridine(55) synthase [Capnocytophaga sp. oral taxon 412
str. F0487]
gi|392609938|gb|EIW92733.1| tRNA pseudouridine(55) synthase [Capnocytophaga sp. oral taxon 412
str. F0487]
Length = 558
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 83/137 (60%), Gaps = 11/137 (8%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR-------RLVKVKKVGHAGTLDPMATGLLIVCVGKATK 361
G ++L++KP W+SF K++ +L K+K +GHAGTLDP+A+GLL++C GK TK
Sbjct: 10 GRILLIDKPLQWSSFQAVNKIKWAILKHYKLKKIK-IGHAGTLDPLASGLLVICTGKFTK 68
Query: 362 LVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVP 421
+ Q +K Y+G +G T ++D ++ + P +HI E I + F GE+ Q P
Sbjct: 69 KITEIQDTVKTYTGTITVGATTPSYDKETKIDAHYPTDHITPELIEEVRMQFIGELTQTP 128
Query: 422 PMFSAIK---VRVFHFS 435
P+FSAIK R++ F+
Sbjct: 129 PVFSAIKKEGKRLYEFA 145
>gi|363420316|ref|ZP_09308409.1| tRNA pseudouridine synthase B [Rhodococcus pyridinivorans AK37]
gi|359735900|gb|EHK84855.1| tRNA pseudouridine synthase B [Rhodococcus pyridinivorans AK37]
Length = 307
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 75/119 (63%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+KP G TS V + RRL+ +KVGHAGTLDPMATG+L++ V +ATKL+
Sbjct: 18 LLVVDKPAGMTSHDVVARCRRLLGTRKVGHAGTLDPMATGVLVLGVERATKLLGLLALTT 77
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ RLG++T T DA+ + H+ DE I + A+ G+I QVP SAIK+
Sbjct: 78 KSYTATIRLGQSTVTDDAEGETVATTDATHVTDEQIGEGVAALTGDIEQVPASVSAIKI 136
>gi|398814368|ref|ZP_10573049.1| tRNA pseudouridine 55 synthase [Brevibacillus sp. BC25]
gi|398036637|gb|EJL29846.1| tRNA pseudouridine 55 synthase [Brevibacillus sp. BC25]
Length = 308
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 57/121 (47%), Positives = 77/121 (63%), Gaps = 2/121 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++++KP G TS ++RRL KKVGH GTLDP TG+L +CVG AT+LV+ Q +
Sbjct: 7 VLVIDKPAGMTSHDCVARIRRLYGTKKVGHTGTLDPDVTGVLPICVGHATRLVEYLQELP 66
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWE--HIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y V RLG T+T DA V+++ + I E I+ SF GE+ QVPPMFSA+K
Sbjct: 67 KRYDVVMRLGSTTTTEDASGEVVEQAGVDAASITTERIQALFESFLGEMEQVPPMFSAVK 126
Query: 429 V 429
V
Sbjct: 127 V 127
>gi|451936501|ref|YP_007460355.1| tRNA pseudouridine synthase B [Candidatus Kinetoplastibacterium
oncopeltii TCC290E]
gi|451777424|gb|AGF48399.1| tRNA pseudouridine synthase B [Candidatus Kinetoplastibacterium
oncopeltii TCC290E]
Length = 237
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 59/130 (45%), Positives = 73/130 (56%), Gaps = 5/130 (3%)
Query: 301 PPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKAT 360
P DG F L++KP G TS K+RR + +KK GH GTLDP ATGLL+ C GKAT
Sbjct: 3 PHQIDGFF----LLDKPAGITSNLALQKVRRFLNIKKAGHTGTLDPFATGLLVCCFGKAT 58
Query: 361 KLVDRYQGMIKGYSGVFRLGEATSTWDADSPVI-QREPWEHIKDEDIRKAAASFRGEIWQ 419
K + + K Y +LGE T T D V+ Q ++ I I K F GEI Q
Sbjct: 59 KKSNIFLNASKSYIATIKLGEETDTGDLTGKVVSQSSDYKFIDISSIEKTLVHFMGEIEQ 118
Query: 420 VPPMFSAIKV 429
+PPM+SAIKV
Sbjct: 119 IPPMYSAIKV 128
>gi|258648185|ref|ZP_05735654.1| tRNA pseudouridine synthase B [Prevotella tannerae ATCC 51259]
gi|260852069|gb|EEX71938.1| tRNA pseudouridine synthase B [Prevotella tannerae ATCC 51259]
Length = 249
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 78/127 (61%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK------KVGHAGTLDPMATGLLIVCVGKATKL 362
G ++ +KP TSF V G++RRL+ K +VGHAGTLDP+ATG+LI+C G+ATK
Sbjct: 6 GRILAFDKPYKMTSFGVVGRVRRLLTQKMDGRKIRVGHAGTLDPLATGVLILCTGQATKQ 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ Q K Y +LGE T ++D + PV + HI E +A F G+I QVPP
Sbjct: 66 IESLQKNTKEYIAELKLGETTPSFDLEHPVDKTFSTAHITAESFEEAVRKFEGDILQVPP 125
Query: 423 MFSAIKV 429
+FSA KV
Sbjct: 126 VFSACKV 132
>gi|423300998|ref|ZP_17279022.1| tRNA pseudouridine synthase B [Bacteroides finegoldii CL09T03C10]
gi|408472333|gb|EKJ90861.1| tRNA pseudouridine synthase B [Bacteroides finegoldii CL09T03C10]
Length = 240
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 59/127 (46%), Positives = 74/127 (58%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ NKP GWTSF V G R R + VKK VGHAGTLDP+ATG++IVC GKATK
Sbjct: 6 GEVLFFNKPLGWTSFKVVGHARYHICRRIGVKKLKVGHAGTLDPLATGVMIVCTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y RLG T ++D + + P HI E + + F G I QVPP
Sbjct: 66 IEEFQYHTKEYIATLRLGATTPSYDLEHEIDATYPTGHITREMVEEVLTHFIGMIEQVPP 125
Query: 423 MFSAIKV 429
FSA V
Sbjct: 126 AFSACMV 132
>gi|282877727|ref|ZP_06286542.1| tRNA pseudouridine synthase B [Prevotella buccalis ATCC 35310]
gi|281300299|gb|EFA92653.1| tRNA pseudouridine synthase B [Prevotella buccalis ATCC 35310]
Length = 236
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 55/127 (43%), Positives = 77/127 (60%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK------KVGHAGTLDPMATGLLIVCVGKATKL 362
G + ++KP G TSF +R ++ K K+GHAGTLDP+ATG+L++C GKATK
Sbjct: 6 GEIFAIDKPYGMTSFGALAHVRYVISRKLGIKRIKIGHAGTLDPLATGVLVLCTGKATKQ 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+++ Q K Y+ +LG T+++D + V Q P EHI E I +A F G+I Q PP
Sbjct: 66 IEQLQAHDKEYTCTLQLGATTASYDKEHEVNQTFPTEHITRERIDEALKQFVGDIQQTPP 125
Query: 423 MFSAIKV 429
FSA KV
Sbjct: 126 TFSACKV 132
>gi|282880084|ref|ZP_06288804.1| tRNA pseudouridine synthase B [Prevotella timonensis CRIS 5C-B1]
gi|281305957|gb|EFA97997.1| tRNA pseudouridine synthase B [Prevotella timonensis CRIS 5C-B1]
Length = 235
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 75/127 (59%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK------KVGHAGTLDPMATGLLIVCVGKATKL 362
G + ++KP G TSF +R ++ K K+GHAGTLDP+ATG+L++C GKATK
Sbjct: 6 GEIFAIDKPYGMTSFGALAHVRYVISRKLGIKRIKIGHAGTLDPLATGVLVLCTGKATKQ 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+++ Q K Y +LG T+++D + PV P EHI E I + F GEI Q PP
Sbjct: 66 IEQLQAHTKEYVCTIQLGATTASYDCEHPVNATYPTEHITLERIEQVLKLFVGEIQQTPP 125
Query: 423 MFSAIKV 429
+SA KV
Sbjct: 126 TYSACKV 132
>gi|154497688|ref|ZP_02036066.1| hypothetical protein BACCAP_01664 [Bacteroides capillosus ATCC
29799]
gi|150273186|gb|EDN00331.1| tRNA pseudouridine synthase B [Pseudoflavonifractor capillosus ATCC
29799]
Length = 289
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 77/118 (65%), Gaps = 1/118 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++++KP GWTS VC K+R ++ ++VGHAGTLDPMATG+L V VG+AT+ V+
Sbjct: 5 IIVIDKPAGWTSMDVCAKIRGVLHERRVGHAGTLDPMATGVLPVFVGRATRAVEFAAEGG 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y RLG T+T D V++ +P + + A A FRG+I Q+PPM+SAIK
Sbjct: 65 KEYVAGLRLGVVTNTQDTSGTVLEEKPVS-VDRAALEAALAPFRGDILQIPPMYSAIK 121
>gi|372221882|ref|ZP_09500303.1| tRNA pseudouridine synthase B [Mesoflavibacter zeaxanthinifaciens
S86]
Length = 234
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 53/127 (41%), Positives = 77/127 (60%), Gaps = 7/127 (5%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK-------KVGHAGTLDPMATGLLIVCVGKATK 361
G +L++KP W+SF L+ ++ K K+GHAGTLDP+ATGLL++C GK TK
Sbjct: 12 GQTLLIDKPLNWSSFQAVNALKWAIRKKFDLNKKFKIGHAGTLDPLATGLLLICTGKHTK 71
Query: 362 LVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVP 421
+ QG K Y+G+ LG T ++D ++ + Q +HI + I+ A F GEI Q P
Sbjct: 72 TIPSLQGQEKEYTGIITLGATTPSYDLETEIDQTFSTDHITETLIKATTAKFLGEIDQRP 131
Query: 422 PMFSAIK 428
P+FSA+K
Sbjct: 132 PIFSALK 138
>gi|357007998|ref|ZP_09072997.1| tRNA pseudouridine synthase B [Paenibacillus elgii B69]
Length = 313
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 55/118 (46%), Positives = 76/118 (64%), Gaps = 2/118 (1%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V KPKG+TS V K+RR+V++K++GH GTLDP TG+L +C+G+AT+LV+ Q + K Y
Sbjct: 11 VWKPKGFTSHDVVAKVRRIVRIKRIGHTGTLDPQVTGVLPLCIGRATRLVEYIQELPKAY 70
Query: 374 SGVFRLGEATSTWDADSPVIQR--EPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
LG AT T D V++R E + E + A F G+I QVPPM+SA+KV
Sbjct: 71 EATLLLGLATDTEDLSGEVLERVERLGERLTPEQVTAAVLRFIGDIEQVPPMYSAVKV 128
>gi|226323224|ref|ZP_03798742.1| hypothetical protein COPCOM_00996 [Coprococcus comes ATCC 27758]
gi|225208414|gb|EEG90768.1| tRNA pseudouridine synthase B [Coprococcus comes ATCC 27758]
Length = 302
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/116 (48%), Positives = 70/116 (60%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V K KG+TS V KLR +VK KK+GH GTLDP A G+L VC GKATKL D K Y
Sbjct: 8 VYKEKGYTSHDVVAKLRGIVKQKKIGHTGTLDPDAEGVLPVCFGKATKLCDLLTDKDKTY 67
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
V LG+ T T D V+++ E + +E + SF GE Q+PPM+SA+KV
Sbjct: 68 QAVLLLGQVTDTQDTSGQVLEKHSTEDLTNEKVENVIRSFEGEYDQIPPMYSALKV 123
>gi|340347529|ref|ZP_08670637.1| tRNA pseudouridine synthase B [Prevotella dentalis DSM 3688]
gi|433653556|ref|YP_007297410.1| tRNA pseudouridine 55 synthase [Prevotella dentalis DSM 3688]
gi|339609225|gb|EGQ14100.1| tRNA pseudouridine synthase B [Prevotella dentalis DSM 3688]
gi|433304089|gb|AGB29904.1| tRNA pseudouridine 55 synthase [Prevotella dentalis DSM 3688]
Length = 235
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 55/134 (41%), Positives = 77/134 (57%), Gaps = 8/134 (5%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK-----KVGHAGTLDPMATGLLIVCVGKATKLV 363
G ++ ++KP +SF +R L+ K KVGHAGTLDP+ATG+LI+C GK TK +
Sbjct: 6 GEIIAIDKPFRMSSFRALAHVRYLLSRKLGRKVKVGHAGTLDPLATGVLILCTGKCTKQI 65
Query: 364 DRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPM 423
+R Q K Y+ +LG T ++D + V PW HI E + A F G++ QVPP
Sbjct: 66 ERLQAHTKEYTATLQLGATTDSYDREHSVNHTYPWRHITREMVLDTLARFEGDVEQVPPT 125
Query: 424 FSAIKV---RVFHF 434
+SA KV R +H
Sbjct: 126 YSACKVDGRRAYHL 139
>gi|333029503|ref|ZP_08457564.1| tRNA pseudouridine synthase B [Bacteroides coprosuis DSM 18011]
gi|332740100|gb|EGJ70582.1| tRNA pseudouridine synthase B [Bacteroides coprosuis DSM 18011]
Length = 232
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 56/127 (44%), Positives = 77/127 (60%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVC----GKLRRLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ NKP WTSF + G LR+ + VKK VGHAGTLDP+ATG++I+C GKATK
Sbjct: 6 GEVLYFNKPLEWTSFNLVAKVRGALRKKLNVKKIKVGHAGTLDPLATGVMIICTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y +LG T ++D + + P H+ E + K SF GEI Q+PP
Sbjct: 66 IEEFQYQTKEYIANIKLGATTPSYDLEHEIDATYPTSHLTKELVEKTLKSFIGEIQQIPP 125
Query: 423 MFSAIKV 429
FSA K+
Sbjct: 126 SFSACKI 132
>gi|227833348|ref|YP_002835055.1| tRNA pseudouridine synthase B [Corynebacterium aurimucosum ATCC
700975]
gi|262184334|ref|ZP_06043755.1| tRNA pseudouridine synthase B [Corynebacterium aurimucosum ATCC
700975]
gi|254764883|sp|C3PH13.1|TRUB_CORA7 RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|227454364|gb|ACP33117.1| tRNA pseudouridine synthase B [Corynebacterium aurimucosum ATCC
700975]
Length = 297
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 71/119 (59%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V GKLRR + +KVGHAGTLDPMATG+L+V + + TK +
Sbjct: 10 LVVVDKPAGMTSHDVVGKLRRFFRTRKVGHAGTLDPMATGVLVVGIERGTKFLAHMVAST 69
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y RLG AT T DA+ EP ++D I + A+ G+I Q P SAIKV
Sbjct: 70 KAYDATIRLGTATHTDDAEGEATWGEPATAVEDSAIAREIAALTGDIMQRPAAVSAIKV 128
>gi|424827585|ref|ZP_18252372.1| tRNA pseudouridine synthase B [Clostridium sporogenes PA 3679]
gi|365980025|gb|EHN16066.1| tRNA pseudouridine synthase B [Clostridium sporogenes PA 3679]
Length = 289
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 54/116 (46%), Positives = 76/116 (65%), Gaps = 1/116 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V KPKG TSF V +R++ K+KKVGH GTLDP+A+G+L VC+GKATK+VD K Y
Sbjct: 7 VLKPKGITSFDVVRDIRKIAKIKKVGHTGTLDPLASGVLPVCIGKATKIVDYIMEGTKTY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
+LG T T+D + V++ E + ++ KA ++G I QVPPM+SA+K+
Sbjct: 67 RVEMKLGTTTDTYDREGTVLE-EKEVSVSSIEVEKAIEKYKGNIEQVPPMYSALKI 121
>gi|453076250|ref|ZP_21979027.1| tRNA pseudouridine synthase B [Rhodococcus triatomae BKS 15-14]
gi|452761369|gb|EME19676.1| tRNA pseudouridine synthase B [Rhodococcus triatomae BKS 15-14]
Length = 306
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 57/134 (42%), Positives = 81/134 (60%), Gaps = 2/134 (1%)
Query: 297 STELPPTWDGPFGT-MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVC 355
S PP+ G G +++V+K G TS V + R+++ +KVGHAGTLDPMATG+L++
Sbjct: 2 SAHRPPS-SGLLGAGLLIVDKDGGMTSHDVVARCRKILHTRKVGHAGTLDPMATGVLVLG 60
Query: 356 VGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRG 415
V +ATKL+ K YS RLG+AT+T DA+ V+ + D+D+ A+ G
Sbjct: 61 VERATKLLGLLSLTTKAYSATIRLGQATTTDDAEGEVLSTANASAVTDDDVAAVVATLTG 120
Query: 416 EIWQVPPMFSAIKV 429
+I QVP SAIKV
Sbjct: 121 DILQVPTRVSAIKV 134
>gi|406983071|gb|EKE04320.1| tRNA pseudouridine synthase B [uncultured bacterium]
Length = 300
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 55/120 (45%), Positives = 80/120 (66%), Gaps = 3/120 (2%)
Query: 308 FGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQ 367
FG ++ VNKP +TS V GKLR+++ +K++GH GTLDP+A G+L VC+GKATK++ +Y
Sbjct: 7 FG-IINVNKPIRFTSHDVVGKLRKILNMKQIGHTGTLDPLAVGVLPVCIGKATKII-QYL 64
Query: 368 GMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAI 427
K Y +LG T T+DAD VI+ P ++ DI + F+GEI Q PP++SA+
Sbjct: 65 EESKAYRAYIKLGIKTDTYDADGEVIEDNPV-NLDISDIESRLSRFKGEIIQKPPIYSAV 123
>gi|169342735|ref|ZP_02863776.1| tRNA pseudouridine synthase B [Clostridium perfringens C str.
JGS1495]
gi|169299241|gb|EDS81311.1| tRNA pseudouridine synthase B [Clostridium perfringens C str.
JGS1495]
Length = 294
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 77/125 (61%), Gaps = 3/125 (2%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+ K G TSF V +RR+ K+KKVGH GTLDP A+G+L VC+GKATK++D K Y
Sbjct: 7 IYKNTGMTSFDVVAMVRRVAKMKKVGHTGTLDPAASGVLPVCLGKATKIIDYIMENKKVY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK---VR 430
+LG T T+D + V++ + HI ++I SF G I QVPPM+SA+K VR
Sbjct: 67 RVNLKLGMVTDTYDLEGEVLREKDASHITKDEILNCINSFLGTIDQVPPMYSALKQNGVR 126
Query: 431 VFHFS 435
++ +
Sbjct: 127 LYELA 131
>gi|381187092|ref|ZP_09894657.1| tRNA pseudouridine synthase B [Flavobacterium frigoris PS1]
gi|379650702|gb|EIA09272.1| tRNA pseudouridine synthase B [Flavobacterium frigoris PS1]
Length = 232
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 59/134 (44%), Positives = 80/134 (59%), Gaps = 10/134 (7%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRR-------LVKVKKVGHAGTLDPMATGLLIVCVGKATK 361
G ++L++KP W+SF KL+ L K K+GHAGTLDP+ATGLL+VC GK TK
Sbjct: 9 GQILLIDKPLKWSSFQAVNKLKYALINNLGLPKKFKIGHAGTLDPLATGLLLVCTGKFTK 68
Query: 362 LVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVP 421
+ QG K Y+G F +G T ++D ++ V Q HI D I + F GEI Q P
Sbjct: 69 RITELQGQAKEYTGTFFIGATTPSYDLETEVDQTFVTAHIDDALIHETVKQFLGEIDQKP 128
Query: 422 PMFSAIK---VRVF 432
P++SAIK VR++
Sbjct: 129 PIYSAIKKEGVRLY 142
>gi|427420175|ref|ZP_18910358.1| tRNA pseudouridine synthase B [Leptolyngbya sp. PCC 7375]
gi|425762888|gb|EKV03741.1| tRNA pseudouridine synthase B [Leptolyngbya sp. PCC 7375]
Length = 299
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 54/116 (46%), Positives = 75/116 (64%), Gaps = 1/116 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
++KP GWTS KLRRL++ KK+GHAGTLDP ATG+L V VG+AT+L+ G K Y
Sbjct: 8 LHKPTGWTSHDCVAKLRRLLQTKKIGHAGTLDPAATGVLPVAVGRATRLLQYLPGD-KAY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
V +LG T T D + V+ + H+ + + A+F+GEI Q+PPM+SA+ V
Sbjct: 67 RAVVQLGTTTDTDDLEGAVLTQTSAAHVSLSAVTEQLANFQGEIPQIPPMYSAVHV 122
>gi|270308251|ref|YP_003330309.1| tRNA pseudouridine synthase B [Dehalococcoides sp. VS]
gi|270154143|gb|ACZ61981.1| tRNA pseudouridine synthase B [Dehalococcoides sp. VS]
Length = 300
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 77/117 (65%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+NKP G TSF V K+RR+ K+VGH GTLDP ATG++ V +G++T+L++ + K Y
Sbjct: 7 INKPFGITSFDVVSKIRRIYSQKRVGHGGTLDPYATGVIPVFLGRSTRLIEYLSSVSKTY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVR 430
LG T ++D++ V R+P++ I E I+ A F+G+I Q+PPM+SA+K R
Sbjct: 67 LAEIELGTETDSYDSEGEVTSRKPFDRITREMIQTALLDFQGKITQIPPMYSAVKHR 123
>gi|168207527|ref|ZP_02633532.1| tRNA pseudouridine synthase B [Clostridium perfringens E str.
JGS1987]
gi|170661137|gb|EDT13820.1| tRNA pseudouridine synthase B [Clostridium perfringens E str.
JGS1987]
Length = 294
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 77/125 (61%), Gaps = 3/125 (2%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+ K G TSF V +RR+ K+KKVGH GTLDP A+G+L VC+GKATK++D K Y
Sbjct: 7 IYKNTGMTSFDVVAMVRRVAKMKKVGHTGTLDPAASGVLPVCLGKATKIIDYIMENKKVY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK---VR 430
+LG T T+D + V++ + HI ++I SF G I QVPPM+SA+K VR
Sbjct: 67 RVNLKLGMVTDTYDLEGEVLREKDASHITKDEILNCINSFVGTIDQVPPMYSALKQNGVR 126
Query: 431 VFHFS 435
++ +
Sbjct: 127 LYELA 131
>gi|399927100|ref|ZP_10784458.1| tRNA pseudouridine synthase B [Myroides injenensis M09-0166]
Length = 238
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 55/126 (43%), Positives = 79/126 (62%), Gaps = 6/126 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVKK------VGHAGTLDPMATGLLIVCVGKATKL 362
G ++L++KP W+SF K++ L+K + VGHAGTLDP+A+GLLIVC GKATK
Sbjct: 12 GQILLIDKPLHWSSFQAVNKIKWLLKKELGLKKIKVGHAGTLDPLASGLLIVCTGKATKQ 71
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+ QG +K Y+G +G T ++D ++ + Q P +HI D + SF GE Q PP
Sbjct: 72 ISDLQGQVKEYTGTITVGATTPSYDLETEIDQTFPIDHINDILLDNTRKSFLGETQQKPP 131
Query: 423 MFSAIK 428
+FSA+K
Sbjct: 132 IFSALK 137
>gi|399526450|ref|ZP_10766229.1| tRNA pseudouridine(55) synthase [Actinomyces sp. ICM39]
gi|398363068|gb|EJN46718.1| tRNA pseudouridine(55) synthase [Actinomyces sp. ICM39]
Length = 355
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 76/125 (60%)
Query: 305 DGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVD 364
D P +++++KP+G TS V ++RRL +KVGH GTLDPMATG+L++ +GKATKL+
Sbjct: 11 DNPRPGLLVIDKPQGLTSHDVVSRVRRLAHTRKVGHGGTLDPMATGVLVIGIGKATKLLT 70
Query: 365 RYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMF 424
G K Y R G AT+T DA+ + + +E + A A RG+I QVP
Sbjct: 71 WVSGHSKEYRATIRFGVATNTDDAEGVATEAVGCASLSEEQLEAALAPLRGDIMQVPSTV 130
Query: 425 SAIKV 429
SAIKV
Sbjct: 131 SAIKV 135
>gi|72382757|ref|YP_292112.1| tRNA pseudouridine synthase B [Prochlorococcus marinus str. NATL2A]
gi|91208091|sp|Q46JB9.1|TRUB_PROMT RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|72002607|gb|AAZ58409.1| tRNA pseudouridine synthase B [Prochlorococcus marinus str. NATL2A]
Length = 314
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 77/124 (62%), Gaps = 2/124 (1%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
PFG V+++KP G TS +LR++ +KK+GH+GTLDP TG+L + +G AT+L+
Sbjct: 4 PFG-FVVIDKPSGLTSHDCVNRLRKVFGIKKIGHSGTLDPAVTGVLPIAIGDATRLISYL 62
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
QG K Y G+ +LG T+T D +I+ + W I I +FRGEI Q PP+FS+
Sbjct: 63 QGS-KAYRGIIQLGATTNTDDMQGEIIESKAWPLITQNYINYLLENFRGEILQKPPIFSS 121
Query: 427 IKVR 430
+ ++
Sbjct: 122 VHIK 125
>gi|116491306|ref|YP_810850.1| pseudouridine synthase [Oenococcus oeni PSU-1]
gi|290890857|ref|ZP_06553923.1| hypothetical protein AWRIB429_1313 [Oenococcus oeni AWRIB429]
gi|419758091|ref|ZP_14284412.1| pseudouridine synthase [Oenococcus oeni AWRIB304]
gi|419857483|ref|ZP_14380190.1| pseudouridine synthase [Oenococcus oeni AWRIB202]
gi|419858888|ref|ZP_14381546.1| pseudouridine synthase [Oenococcus oeni DSM 20252 = AWRIB129]
gi|421185122|ref|ZP_15642535.1| pseudouridine synthase [Oenococcus oeni AWRIB318]
gi|421185953|ref|ZP_15643349.1| pseudouridine synthase [Oenococcus oeni AWRIB418]
gi|421188082|ref|ZP_15645422.1| pseudouridine synthase [Oenococcus oeni AWRIB419]
gi|421189966|ref|ZP_15647273.1| pseudouridine synthase [Oenococcus oeni AWRIB422]
gi|421191602|ref|ZP_15648874.1| pseudouridine synthase [Oenococcus oeni AWRIB548]
gi|421193389|ref|ZP_15650636.1| pseudouridine synthase [Oenococcus oeni AWRIB553]
gi|421194520|ref|ZP_15651739.1| pseudouridine synthase [Oenococcus oeni AWRIB568]
gi|421196463|ref|ZP_15653648.1| pseudouridine synthase [Oenococcus oeni AWRIB576]
gi|122276512|sp|Q04ED7.1|TRUB_OENOB RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|116092031|gb|ABJ57185.1| tRNA pseudouridine synthase B [Oenococcus oeni PSU-1]
gi|290479508|gb|EFD88166.1| hypothetical protein AWRIB429_1313 [Oenococcus oeni AWRIB429]
gi|399905259|gb|EJN92706.1| pseudouridine synthase [Oenococcus oeni AWRIB304]
gi|399965312|gb|EJN99937.1| pseudouridine synthase [Oenococcus oeni AWRIB318]
gi|399966123|gb|EJO00673.1| pseudouridine synthase [Oenococcus oeni AWRIB419]
gi|399968149|gb|EJO02603.1| pseudouridine synthase [Oenococcus oeni AWRIB418]
gi|399971306|gb|EJO05556.1| pseudouridine synthase [Oenococcus oeni AWRIB548]
gi|399971400|gb|EJO05649.1| pseudouridine synthase [Oenococcus oeni AWRIB422]
gi|399972032|gb|EJO06251.1| pseudouridine synthase [Oenococcus oeni AWRIB553]
gi|399977052|gb|EJO11050.1| pseudouridine synthase [Oenococcus oeni AWRIB576]
gi|399977640|gb|EJO11616.1| pseudouridine synthase [Oenococcus oeni AWRIB568]
gi|410497511|gb|EKP88983.1| pseudouridine synthase [Oenococcus oeni DSM 20252 = AWRIB129]
gi|410498049|gb|EKP89515.1| pseudouridine synthase [Oenococcus oeni AWRIB202]
Length = 298
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 60/128 (46%), Positives = 77/128 (60%), Gaps = 1/128 (0%)
Query: 308 FGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQ 367
+ +VLV+KP G TSF V KLR++ + K+VGH GTLDP TGLL++ +GKATKL+D Q
Sbjct: 2 YNGIVLVDKPAGLTSFDVVAKLRKIFQQKQVGHTGTLDPSVTGLLVIVLGKATKLIDYLQ 61
Query: 368 GMIKGYSGVFRLGEATSTWDADSPVIQREPW-EHIKDEDIRKAAASFRGEIWQVPPMFSA 426
K Y G LG T T D D V + + E I D + A SF G Q+PPM+SA
Sbjct: 62 ENQKQYRGTLILGLKTDTQDMDGQVTEMQFLKEAIADFKKKAAFDSFLGSSDQLPPMYSA 121
Query: 427 IKVRVFHF 434
+KV H
Sbjct: 122 VKVGGKHL 129
>gi|359420895|ref|ZP_09212826.1| tRNA pseudouridine synthase B [Gordonia araii NBRC 100433]
gi|358243168|dbj|GAB10895.1| tRNA pseudouridine synthase B [Gordonia araii NBRC 100433]
Length = 300
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 75/119 (63%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V K R+ ++VGHAGTLDPMATG+L+V + +ATKL+
Sbjct: 12 LVVVDKPAGITSHDVVSKCRKAFNTRRVGHAGTLDPMATGVLVVGIERATKLLGLLSLTT 71
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ RLG AT+T DA+ +I++ P + D++I A G+I QVP SAIKV
Sbjct: 72 KSYTATIRLGAATTTDDAEGEIIRQVPAGGVGDDEIAAAIGKLTGDIEQVPATVSAIKV 130
>gi|429750459|ref|ZP_19283503.1| tRNA pseudouridine synthase B [Capnocytophaga sp. oral taxon 332
str. F0381]
gi|429165042|gb|EKY07120.1| tRNA pseudouridine synthase B [Capnocytophaga sp. oral taxon 332
str. F0381]
Length = 499
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 55/137 (40%), Positives = 81/137 (59%), Gaps = 11/137 (8%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR-------RLVKVKKVGHAGTLDPMATGLLIVCVGKATK 361
G ++L++KP W+SF K++ +L K+K +GHAGTLDP+A+GLL++C GK TK
Sbjct: 10 GRIILIDKPLHWSSFQAVNKIKWAIIKHYKLKKIK-IGHAGTLDPLASGLLVLCTGKYTK 68
Query: 362 LVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVP 421
+ Q K Y+G LG T ++D ++ V P HI E I + F GE+ Q P
Sbjct: 69 KITEIQDATKTYTGTITLGATTPSYDMETEVDTHYPTAHITPEMIEEVRQQFTGELLQTP 128
Query: 422 PMFSAIK---VRVFHFS 435
P+FSAIK R++ F+
Sbjct: 129 PVFSAIKKEGKRLYEFA 145
>gi|443323976|ref|ZP_21052939.1| tRNA pseudouridine 55 synthase [Xenococcus sp. PCC 7305]
gi|442796240|gb|ELS05547.1| tRNA pseudouridine 55 synthase [Xenococcus sp. PCC 7305]
Length = 336
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 55/113 (48%), Positives = 76/113 (67%), Gaps = 1/113 (0%)
Query: 316 KPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSG 375
KP G+TS K+RRL+ +KKVGH GTLDP+ATG+L + VGKAT+L+ ++ K Y
Sbjct: 42 KPTGFTSHDCVSKIRRLIDMKKVGHGGTLDPLATGVLPIAVGKATRLL-QFLPETKVYRA 100
Query: 376 VFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
V RLG +TST D + +I + HI+ E I +F+G+I Q+PPM+SAIK
Sbjct: 101 VIRLGMSTSTDDLEGEIINTKSALHIRQEKIVPYLDNFQGQIEQIPPMYSAIK 153
>gi|399516241|ref|ZP_10757852.1| tRNA pseudouridine synthase B [Leuconostoc pseudomesenteroides
4882]
gi|398648969|emb|CCJ65879.1| tRNA pseudouridine synthase B [Leuconostoc pseudomesenteroides
4882]
Length = 302
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 59/120 (49%), Positives = 75/120 (62%), Gaps = 1/120 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+KP+G TSF V ++RRL KKVGHAGTLDP G+L+V +GKATKL+D Q
Sbjct: 10 VLVVDKPRGVTSFDVVRQVRRLFGQKKVGHAGTLDPSVAGVLVVALGKATKLIDELQTRP 69
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG AT T D D VI R+ + I I A G I Q+PPM+SA+KV
Sbjct: 70 KRYIGEITLGFATETEDLDGAVIARKTIDTPIATTTIDAAIKVLNGAIKQIPPMYSAVKV 129
>gi|334134194|ref|ZP_08507706.1| tRNA pseudouridine synthase B [Paenibacillus sp. HGF7]
gi|333608276|gb|EGL19578.1| tRNA pseudouridine synthase B [Paenibacillus sp. HGF7]
Length = 311
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 51/116 (43%), Positives = 72/116 (62%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+ KPKG TS V K RR + +K++GH GTLDP TG+L +C+G+AT++V+ Q + K Y
Sbjct: 9 ILKPKGMTSHDVVAKARRFLGIKRIGHTGTLDPEVTGVLPLCIGRATRMVEYIQELPKQY 68
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
G AT T D V++ P + ++ +R SF GEI QVPPM+SA+KV
Sbjct: 69 EAAVVFGLATDTEDLSGNVLEEIPLVQLAEDKVRSVIQSFVGEISQVPPMYSAVKV 124
>gi|226313016|ref|YP_002772910.1| tRNA pseudouridine synthase B [Brevibacillus brevis NBRC 100599]
gi|226095964|dbj|BAH44406.1| tRNA pseudouridine synthase B [Brevibacillus brevis NBRC 100599]
Length = 308
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 57/121 (47%), Positives = 77/121 (63%), Gaps = 2/121 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++++KP G TS ++RRL KKVGH GTLDP TG+L +CVG AT+LV+ Q +
Sbjct: 7 VLVIDKPAGMTSHDCVARIRRLYGTKKVGHTGTLDPDVTGVLPICVGHATRLVEYLQELP 66
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH--IKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y V RLG T+T DA V+++ + I E I+ SF GE+ QVPPMFSA+K
Sbjct: 67 KRYDVVMRLGSTTTTEDASGEVVEQAGVDAAWITTERIQALFESFLGEMEQVPPMFSAVK 126
Query: 429 V 429
V
Sbjct: 127 V 127
>gi|375255468|ref|YP_005014635.1| tRNA pseudouridine synthase B [Tannerella forsythia ATCC 43037]
gi|363407130|gb|AEW20816.1| tRNA pseudouridine synthase B [Tannerella forsythia ATCC 43037]
Length = 239
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 76/127 (59%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G +V +KP WTSF + K R R +KVKK VGHAGTLDP ATG+LIVC GKATK
Sbjct: 6 GEIVCFDKPLDWTSFDLVNKFRYLLSRRLKVKKIKVGHAGTLDPKATGVLIVCTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+D +Q K Y +LG T ++D + + P HI E + + +F G I QVPP
Sbjct: 66 IDEFQYQTKEYVATLQLGATTPSFDLEKEIDCTYPTGHITRELVEQTLTTFVGTIRQVPP 125
Query: 423 MFSAIKV 429
+FSA KV
Sbjct: 126 VFSACKV 132
>gi|219850410|ref|YP_002464843.1| tRNA pseudouridine synthase B [Chloroflexus aggregans DSM 9485]
gi|219544669|gb|ACL26407.1| tRNA pseudouridine synthase B [Chloroflexus aggregans DSM 9485]
Length = 293
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 58/119 (48%), Positives = 75/119 (63%), Gaps = 1/119 (0%)
Query: 312 VLVNKPKGWTSFTVCGKLRRLV-KVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
V+++KP G TS V +RRLV +V KVGHAGTLDPMATG+L V +G AT+L+D+
Sbjct: 9 VIIDKPAGLTSHDVVAHVRRLVGRVVKVGHAGTLDPMATGVLPVALGSATRLLDQLVDTR 68
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
KGY GV RLG T+T DAD + + + E I FRG+I Q PP FSA+ +
Sbjct: 69 KGYLGVVRLGIQTTTDDADGEPLVTQAVPELTPETIETVLTRFRGDILQQPPAFSALHI 127
>gi|451818168|ref|YP_007454369.1| tRNA pseudouridine synthase B [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
gi|451784147|gb|AGF55115.1| tRNA pseudouridine synthase B [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
Length = 291
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 55/123 (44%), Positives = 77/123 (62%), Gaps = 3/123 (2%)
Query: 316 KPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSG 375
K +G TSF V K++ L KKVGH GTLDP ATG+L VC+G+ATK +D K Y
Sbjct: 9 KNRGMTSFDVVRKIKSLANEKKVGHTGTLDPEATGVLPVCLGRATKTIDYIMNSNKVYEV 68
Query: 376 VFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK---VRVF 432
F LG T+T+D + VI + +H+ ++++ K SF GE QVPPM+SA+K VR++
Sbjct: 69 KFLLGIKTTTYDLEGEVIDKNDTKHLNEDEVSKVIMSFVGEYDQVPPMYSALKKDGVRLY 128
Query: 433 HFS 435
+
Sbjct: 129 ELA 131
>gi|169350218|ref|ZP_02867156.1| hypothetical protein CLOSPI_00962 [Clostridium spiroforme DSM 1552]
gi|169293001|gb|EDS75134.1| tRNA pseudouridine synthase B [Clostridium spiroforme DSM 1552]
Length = 286
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 76/119 (63%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L+NKP G TS V KLR+++K KKVGH GTLDP ATG+L+VCV KATK++
Sbjct: 10 IILINKPSGMTSHDVVNKLRKILKTKKVGHCGTLDPDATGVLVVCVNKATKVLQFLTSDS 69
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y LG +T T+DA V++++ + + + I +F G+ Q PP++SAIKV
Sbjct: 70 KEYIATLSLGTSTDTYDASGKVLEKKEYSGLDKQVIIDCFNNFVGKQIQKPPIYSAIKV 128
>gi|224540974|ref|ZP_03681513.1| hypothetical protein CATMIT_00125 [Catenibacterium mitsuokai DSM
15897]
gi|224526125|gb|EEF95230.1| tRNA pseudouridine synthase B [Catenibacterium mitsuokai DSM 15897]
Length = 277
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 78/119 (65%), Gaps = 2/119 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L+NKP+G TS V ++RR++ KKVGH GTLDPMATG+L+V + KATK +
Sbjct: 4 IILINKPQGMTSHDVVNRVRRIMHTKKVGHCGTLDPMATGVLVVGINKATKAMQFLMSEE 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y +LG AT T+D++ V++ +P+ D + +SF+G+ Q PPM+SAIK+
Sbjct: 64 KEYRATLKLGSATDTYDSEGKVLETKPFTGYDHLD--EVLSSFKGDSMQKPPMYSAIKI 120
>gi|291538570|emb|CBL11681.1| tRNA pseudouridine synthase B [Roseburia intestinalis XB6B4]
Length = 321
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 57/119 (47%), Positives = 76/119 (63%), Gaps = 1/119 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ V K KG+TSF V KLR ++K KK+GH GTLDP A G+L VC+GKATK+ D
Sbjct: 15 IINVYKEKGYTSFDVVAKLRGILKTKKIGHTGTLDPDAEGVLPVCLGKATKVCDLLTDKN 74
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y V LG+ T T D V++ E + +E +++A SF GE QVPPM+SA+KV
Sbjct: 75 KEYVAVMLLGKVTDTQDTTGTVLEEHLVE-VTEEQVKEAVLSFTGEYMQVPPMYSALKV 132
>gi|224023491|ref|ZP_03641857.1| hypothetical protein BACCOPRO_00193 [Bacteroides coprophilus DSM
18228]
gi|224016713|gb|EEF74725.1| hypothetical protein BACCOPRO_00193 [Bacteroides coprophilus DSM
18228]
Length = 234
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 56/127 (44%), Positives = 77/127 (60%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ +KP WTSF V K+R R + VKK VGHAGTLDP+ATG++I+C GKATK
Sbjct: 6 GEVLYFDKPLRWTSFAVVNKIRYHISRKLGVKKIKVGHAGTLDPLATGVMIICTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y +LG T ++D + + P EHI E + + F+G I Q+PP
Sbjct: 66 IEEFQYHTKEYIATLQLGATTPSYDLEKEIDATYPTEHITREMVEEVLQQFKGTIEQIPP 125
Query: 423 MFSAIKV 429
FSA KV
Sbjct: 126 AFSACKV 132
>gi|182417578|ref|ZP_02948903.1| tRNA pseudouridine synthase B [Clostridium butyricum 5521]
gi|237667423|ref|ZP_04527407.1| tRNA pseudouridine synthase B [Clostridium butyricum E4 str. BoNT E
BL5262]
gi|182378591|gb|EDT76119.1| tRNA pseudouridine synthase B [Clostridium butyricum 5521]
gi|237655771|gb|EEP53327.1| tRNA pseudouridine synthase B [Clostridium butyricum E4 str. BoNT E
BL5262]
Length = 291
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 78/125 (62%), Gaps = 3/125 (2%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V K +G +SF V K++ L KKVGH GTLDP ATG+L V +GKATK++D K Y
Sbjct: 7 VYKNRGMSSFDVVRKIKFLAHEKKVGHTGTLDPEATGVLPVALGKATKIIDYIMNSSKAY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK---VR 430
LG+ T+T+D + V+ + HIK+E+ R SF GEI Q+PPM+SA+K VR
Sbjct: 67 EVKLILGKKTTTYDLEGEVVSEKDVSHIKEEEARDVVLSFIGEIDQIPPMYSALKKNGVR 126
Query: 431 VFHFS 435
++ +
Sbjct: 127 LYDLA 131
>gi|239618461|ref|YP_002941783.1| tRNA pseudouridine synthase B [Kosmotoga olearia TBF 19.5.1]
gi|239507292|gb|ACR80779.1| tRNA pseudouridine synthase B [Kosmotoga olearia TBF 19.5.1]
Length = 309
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 54/115 (46%), Positives = 74/115 (64%)
Query: 312 VLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIK 371
+ ++KP G TS V ++R+ +KKVGH+GTLDP A+GLLIV VGKAT+L++ +GM K
Sbjct: 7 LFIDKPSGITSHDVVDEIRKKFGIKKVGHSGTLDPFASGLLIVGVGKATRLLEYIKGMDK 66
Query: 372 GYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
Y +LG T T+D +++ HI +E IR A SF GE QVPP +SA
Sbjct: 67 TYEVEMKLGVMTDTFDFTGNLVEERESSHITEEMIRDAIESFTGEYMQVPPAYSA 121
>gi|150003741|ref|YP_001298485.1| tRNA pseudouridine synthase B [Bacteroides vulgatus ATCC 8482]
gi|212692506|ref|ZP_03300634.1| hypothetical protein BACDOR_02002 [Bacteroides dorei DSM 17855]
gi|237709174|ref|ZP_04539655.1| tRNA pseudouridine synthase B [Bacteroides sp. 9_1_42FAA]
gi|294777442|ref|ZP_06742893.1| tRNA pseudouridine synthase B [Bacteroides vulgatus PC510]
gi|345514236|ref|ZP_08793749.1| tRNA pseudouridine synthase B [Bacteroides dorei 5_1_36/D4]
gi|423230594|ref|ZP_17216998.1| tRNA pseudouridine synthase B [Bacteroides dorei CL02T00C15]
gi|423244303|ref|ZP_17225378.1| tRNA pseudouridine synthase B [Bacteroides dorei CL02T12C06]
gi|423313119|ref|ZP_17291055.1| tRNA pseudouridine synthase B [Bacteroides vulgatus CL09T03C04]
gi|189030160|sp|A6KZJ9.1|TRUB_BACV8 RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|149932165|gb|ABR38863.1| tRNA pseudouridine synthase B [Bacteroides vulgatus ATCC 8482]
gi|212664981|gb|EEB25553.1| tRNA pseudouridine synthase B [Bacteroides dorei DSM 17855]
gi|229437217|gb|EEO47294.1| tRNA pseudouridine synthase B [Bacteroides dorei 5_1_36/D4]
gi|229456870|gb|EEO62591.1| tRNA pseudouridine synthase B [Bacteroides sp. 9_1_42FAA]
gi|294448510|gb|EFG17059.1| tRNA pseudouridine synthase B [Bacteroides vulgatus PC510]
gi|392630738|gb|EIY24724.1| tRNA pseudouridine synthase B [Bacteroides dorei CL02T00C15]
gi|392642484|gb|EIY36250.1| tRNA pseudouridine synthase B [Bacteroides dorei CL02T12C06]
gi|392686333|gb|EIY79639.1| tRNA pseudouridine synthase B [Bacteroides vulgatus CL09T03C04]
Length = 235
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 78/127 (61%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ +KP WTSF V K+R R + VKK VGHAGTLDP+ATG++I+C GKATK
Sbjct: 6 GEVLYFDKPLKWTSFAVVNKIRYHICRKLGVKKIKVGHAGTLDPLATGVMIICTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y +LG T ++D + + P EHI E + +A F G I Q+PP
Sbjct: 66 IEEFQYHTKEYIATLQLGATTPSFDLEKEIDATYPTEHITRELVEEALQRFIGRIEQIPP 125
Query: 423 MFSAIKV 429
+FSA KV
Sbjct: 126 VFSACKV 132
>gi|423240779|ref|ZP_17221893.1| tRNA pseudouridine synthase B [Bacteroides dorei CL03T12C01]
gi|392643741|gb|EIY37490.1| tRNA pseudouridine synthase B [Bacteroides dorei CL03T12C01]
Length = 235
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 78/127 (61%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ +KP WTSF V K+R R + VKK VGHAGTLDP+ATG++I+C GKATK
Sbjct: 6 GEVLYFDKPLKWTSFAVVNKIRYHICRKLGVKKIKVGHAGTLDPLATGVMIICTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y +LG T ++D + + P EHI E + +A F G I Q+PP
Sbjct: 66 IEEFQYHTKEYIATLQLGATTPSFDLEKEIDATYPTEHITRELVEEALQRFIGRIEQIPP 125
Query: 423 MFSAIKV 429
+FSA KV
Sbjct: 126 VFSACKV 132
>gi|319937191|ref|ZP_08011598.1| tRNA pseudouridine synthase B [Coprobacillus sp. 29_1]
gi|319807557|gb|EFW04150.1| tRNA pseudouridine synthase B [Coprobacillus sp. 29_1]
Length = 278
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 77/120 (64%), Gaps = 2/120 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP G TS V ++RR++ KKVGH GTLDP ATG+L++C+GKATK +
Sbjct: 4 ILLIHKPSGMTSHDVVNRIRRILHTKKVGHCGTLDPDATGVLVLCIGKATKALQFLMSEE 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVR 430
K Y LG AT T+DA VI+ ++ + E++ + SF G Q+PP++SAIKV+
Sbjct: 64 KEYITTLSLGTATDTYDASGTVIESREYDGV--ENVVEVLQSFVGNQKQIPPIYSAIKVK 121
>gi|319640037|ref|ZP_07994764.1| tRNA pseudouridine synthase B [Bacteroides sp. 3_1_40A]
gi|345517051|ref|ZP_08796529.1| tRNA pseudouridine synthase B [Bacteroides sp. 4_3_47FAA]
gi|254833823|gb|EET14132.1| tRNA pseudouridine synthase B [Bacteroides sp. 4_3_47FAA]
gi|317388315|gb|EFV69167.1| tRNA pseudouridine synthase B [Bacteroides sp. 3_1_40A]
Length = 235
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 78/127 (61%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ +KP WTSF V K+R R + VKK VGHAGTLDP+ATG++I+C GKATK
Sbjct: 6 GEVLYFDKPLKWTSFAVVNKIRYHICRKLGVKKIKVGHAGTLDPLATGVMIICTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y +LG T ++D + + P EHI E + +A F G I Q+PP
Sbjct: 66 IEEFQYHTKEYIATLQLGATTPSFDLEKEIDATYPTEHITRELVEEALQRFIGRIEQIPP 125
Query: 423 MFSAIKV 429
+FSA KV
Sbjct: 126 VFSACKV 132
>gi|194333213|ref|YP_002015073.1| tRNA pseudouridine synthase B [Prosthecochloris aestuarii DSM 271]
gi|194311031|gb|ACF45426.1| tRNA pseudouridine synthase B [Prosthecochloris aestuarii DSM 271]
Length = 247
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 60/144 (41%), Positives = 80/144 (55%), Gaps = 13/144 (9%)
Query: 288 SGEPYIVSRSTELPPTWDGPFGTMVLVNKPKGWTSFTVCGKLR----RLVKVKKVGHAGT 343
GEP ++ S E G +LV+KP GWTSF V K+R R +KVGH GT
Sbjct: 8 GGEPGLMVASQE---------GDFLLVDKPLGWTSFDVVAKIRNAYTRAGLRRKVGHCGT 58
Query: 344 LDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKD 403
LDPMATGLLI+ G+ TK + + + KGY GV +LG T + D+++P +H+
Sbjct: 59 LDPMATGLLILATGRKTKQIAGLEALDKGYEGVVKLGVTTESHDSETPEYDERSIQHVTK 118
Query: 404 EDIRKAAASFRGEIWQVPPMFSAI 427
E I +A A G Q PPM SA+
Sbjct: 119 ESIERAVAQLCGTSMQQPPMHSAV 142
>gi|339481430|ref|ZP_08657089.1| pseudouridine synthase [Leuconostoc pseudomesenteroides KCTC 3652]
Length = 300
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 81/129 (62%), Gaps = 4/129 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++++NK +G TSF V ++RR++ KKVGHAGTLDP G+L+V +GKATKL+D Q
Sbjct: 8 LLVINKSRGMTSFDVVSRVRRIIGQKKVGHAGTLDPNVDGVLVVALGKATKLIDELQTRP 67
Query: 371 KGYSGVFRLGEATSTWDADSPVI-QREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T T D D ++ Q + D+ I +A GEI Q PPM+SA+KV
Sbjct: 68 KSYIGEITLGFSTETEDLDGEIVDQLDIVTPFSDQKIDQAIQQLNGEITQRPPMYSAVKV 127
Query: 430 ---RVFHFS 435
R++ ++
Sbjct: 128 NGKRLYEYA 136
>gi|265752701|ref|ZP_06088270.1| tRNA pseudouridine synthase B [Bacteroides sp. 3_1_33FAA]
gi|263235887|gb|EEZ21382.1| tRNA pseudouridine synthase B [Bacteroides sp. 3_1_33FAA]
Length = 235
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 78/127 (61%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ +KP WTSF V K+R R + VKK VGHAGTLDP+ATG++I+C GKATK
Sbjct: 6 GEVLYFDKPLKWTSFAVVNKIRYHICRKLGVKKIKVGHAGTLDPLATGVMIICTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y +LG T ++D + + P EHI E + +A F G I Q+PP
Sbjct: 66 IEEFQYHTKEYIATLQLGATTPSFDLEKEIDATYPTEHITRELVEEALQRFIGRIEQIPP 125
Query: 423 MFSAIKV 429
+FSA KV
Sbjct: 126 VFSACKV 132
>gi|386714379|ref|YP_006180702.1| tRNA pseudouridine 55 synthase [Halobacillus halophilus DSM 2266]
gi|384073935|emb|CCG45428.1| tRNA pseudouridine 55 synthase [Halobacillus halophilus DSM 2266]
Length = 298
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 55/115 (47%), Positives = 76/115 (66%), Gaps = 1/115 (0%)
Query: 316 KPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSG 375
KPKG+TS K R ++K KK+GH GTLDP G+L +CVGKATK+V IK Y
Sbjct: 9 KPKGFTSHDCVSKARGMLKTKKIGHTGTLDPEVEGVLPLCVGKATKIVPFLTDTIKVYEA 68
Query: 376 VFRLGEATSTWDADSPVIQREPWE-HIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
R+G +T+T DA+ +I+R+P + E I++ SF+G+I QVPPM+SA+KV
Sbjct: 69 SVRMGYSTATEDAEGEIIERKPVSPSLSLEKIKEELPSFQGDIIQVPPMYSAVKV 123
>gi|116618446|ref|YP_818817.1| pseudouridine synthase [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
gi|116097293|gb|ABJ62444.1| tRNA pseudouridine synthase B [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
Length = 302
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 81/129 (62%), Gaps = 4/129 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++++NK +G TSF V ++RR++ KKVGHAGTLDP G+L+V +GKATKL+D Q
Sbjct: 10 LLVINKSRGMTSFDVVSRVRRIIGQKKVGHAGTLDPNVDGVLVVALGKATKLIDELQTRP 69
Query: 371 KGYSGVFRLGEATSTWDADSPVI-QREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T T D D ++ Q + D+ I +A GEI Q PPM+SA+KV
Sbjct: 70 KSYIGEITLGFSTETEDLDGEIVDQLDIVTPFSDQKIDQAIQQLNGEITQRPPMYSAVKV 129
Query: 430 ---RVFHFS 435
R++ ++
Sbjct: 130 NGKRLYEYA 138
>gi|374290404|ref|YP_005037457.1| tRNA-pseudouridine synthase I [Blattabacterium sp. (Cryptocercus
punctulatus) str. Cpu]
gi|358377196|gb|AEU09384.1| tRNA-pseudouridine synthase I [Blattabacterium sp. (Cryptocercus
punctulatus) str. Cpu]
Length = 222
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 80/125 (64%), Gaps = 4/125 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLV----KVKKVGHAGTLDPMATGLLIVCVGKATKLVD 364
G ++L++KP GWTSF V ++++ + K K+GHAGTLDP+ATGLLI+ GK TK VD
Sbjct: 11 GKLLLIDKPWGWTSFEVVKRIKQKIICFSKRIKIGHAGTLDPLATGLLIILTGKYTKKVD 70
Query: 365 RYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMF 424
Q K Y+G+ ++G T ++D+++ HI E I+K + F GEI Q PP F
Sbjct: 71 SIQNYKKTYTGIIKMGCVTPSFDSETKEYNFSSTSHITPELIQKISKKFIGEINQYPPCF 130
Query: 425 SAIKV 429
SA+K+
Sbjct: 131 SALKI 135
>gi|262373594|ref|ZP_06066872.1| tRNA pseudouridine synthase B [Acinetobacter junii SH205]
gi|262311347|gb|EEY92433.1| tRNA pseudouridine synthase B [Acinetobacter junii SH205]
Length = 297
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 72/118 (61%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+ L+NKP G +S + K+RRL +K GH G LDP+ATGLL +C+G+ATK
Sbjct: 12 VFLLNKPLGLSSNSALQKVRRLFNAQKAGHTGALDPLATGLLPICLGEATKFSHYLLDST 71
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y +LGE T+T D + V+Q+ + +E I + FRG+I QVPPM+SA+K
Sbjct: 72 KRYQTTVKLGETTATGDVEGEVLQQRAVPQLTEETIEQVLTKFRGDIQQVPPMYSALK 129
>gi|444919479|ref|ZP_21239499.1| tRNA pseudouridine synthase B [Cystobacter fuscus DSM 2262]
gi|444708421|gb|ELW49487.1| tRNA pseudouridine synthase B [Cystobacter fuscus DSM 2262]
Length = 289
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 75/119 (63%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++++KPKG TSF V ++R L++VKKVGH GTLDPMATG+L +C+G+ATK+
Sbjct: 4 VLVIDKPKGPTSFDVVRQVRGLLRVKKVGHTGTLDPMATGVLPLCLGEATKVAGFITEGD 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y V RLG T T DA+ V+ P + + FRG QVPPM+SA+KV
Sbjct: 64 KAYDAVVRLGAETDTQDAEGKVVAEAPVPPLTASLLEDVLGRFRGTFEQVPPMYSAVKV 122
>gi|153004011|ref|YP_001378336.1| tRNA pseudouridine synthase B [Anaeromyxobacter sp. Fw109-5]
gi|152027584|gb|ABS25352.1| tRNA pseudouridine synthase B [Anaeromyxobacter sp. Fw109-5]
Length = 315
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 74/119 (62%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+KP G TSF V ++RR+++ + GHAGTLDP ATG+L +CVG A KL
Sbjct: 6 VLVVDKPAGPTSFDVVQRVRRILRAPRAGHAGTLDPAATGVLAICVGDAVKLQQYLSDAD 65
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G AT T DA+ V++R + E++R FRG+I QVPPM+SA++V
Sbjct: 66 KAYEATVAFGAATDTEDAEGRVVERGDPSRLTAEELRAVLPRFRGDISQVPPMYSAVRV 124
>gi|313207475|ref|YP_004046652.1| tRNA pseudouridine synthase b [Riemerella anatipestifer ATCC 11845
= DSM 15868]
gi|416110452|ref|ZP_11592067.1| tRNA pseudouridine synthase B [Riemerella anatipestifer RA-YM]
gi|442315332|ref|YP_007356635.1| Pseudouridine synthase [Riemerella anatipestifer RA-CH-2]
gi|312446791|gb|ADQ83146.1| tRNA pseudouridine synthase B [Riemerella anatipestifer ATCC 11845
= DSM 15868]
gi|315023375|gb|EFT36385.1| tRNA pseudouridine synthase B [Riemerella anatipestifer RA-YM]
gi|441484255|gb|AGC40941.1| Pseudouridine synthase [Riemerella anatipestifer RA-CH-2]
Length = 239
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 76/127 (59%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGK----LRRLVKVKKV--GHAGTLDPMATGLLIVCVGKATKL 362
G + LV+KP WTSF K L+R K+KK+ GHAGTLDP ATGLL+VC GKATK
Sbjct: 16 GQVFLVDKPLDWTSFQAVNKMKFKLKREFKLKKIKIGHAGTLDPRATGLLVVCTGKATKT 75
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+ Q K Y ++G T+++D + P I + I E I + SF GEI Q PP
Sbjct: 76 IPEIQNAPKEYHAEIKIGVQTASYDTEEPEILPQDISTITKEQILETLDSFVGEIDQTPP 135
Query: 423 MFSAIKV 429
+FSAIKV
Sbjct: 136 IFSAIKV 142
>gi|153855232|ref|ZP_01996398.1| hypothetical protein DORLON_02412 [Dorea longicatena DSM 13814]
gi|149752231|gb|EDM62162.1| tRNA pseudouridine synthase B [Dorea longicatena DSM 13814]
Length = 299
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 75/119 (63%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ V K KG+TS V KLR +V KK+GH GTLDP ATG+L VC+GKATKL D
Sbjct: 5 IINVYKEKGFTSHDVVAKLRGIVGQKKIGHTGTLDPDATGVLPVCLGKATKLCDLLTDKN 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y V LG+ T T D V++ + E + +E +R+A F G+ Q+PPM+SA+KV
Sbjct: 65 KTYEAVLLLGKTTDTQDITGEVLEEKSTEALTEEKVREAIEGFIGDYEQIPPMYSALKV 123
>gi|282882038|ref|ZP_06290679.1| tRNA pseudouridine synthase B [Peptoniphilus lacrimalis 315-B]
gi|281298068|gb|EFA90523.1| tRNA pseudouridine synthase B [Peptoniphilus lacrimalis 315-B]
Length = 293
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 77/119 (64%), Gaps = 1/119 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L+NK KG TS V +R+ + +KKVGH GTLDPMATGLLI+ +GKATKL D
Sbjct: 4 ILLINKKKGITSHDVISIVRKKLNIKKVGHCGTLDPMATGLLIILIGKATKLSDYIMKNR 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y +LG T ++D +++ + + KD+ I + SF GE+ Q+PPM+SAIKV
Sbjct: 64 KTYLAKVKLGLLTDSYDITGNILENQDFTVDKDKLI-EVLKSFVGEVKQIPPMYSAIKV 121
>gi|403234756|ref|ZP_10913342.1| tRNA pseudouridine synthase B [Bacillus sp. 10403023]
Length = 308
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 55/120 (45%), Positives = 77/120 (64%), Gaps = 1/120 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L+NKPKG TS K+R+LVK+KKVGH GTLDP +G+L VC+G+ATK+V+
Sbjct: 4 ILLLNKPKGMTSHDCVFKVRKLVKMKKVGHTGTLDPDVSGVLPVCLGRATKIVEYVTAAN 63
Query: 371 KGYSGVFRLGEATSTWDADSPVI-QREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA ++ ++ I E++ S GEI Q PPM+SA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEIVGEKRVDREIMKEEVVNVLHSLTGEIIQTPPMYSAVKV 123
>gi|400294426|ref|ZP_10796212.1| tRNA pseudouridine(55) synthase [Actinomyces naeslundii str. Howell
279]
gi|399900467|gb|EJN83436.1| tRNA pseudouridine(55) synthase [Actinomyces naeslundii str. Howell
279]
Length = 383
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 59/130 (45%), Positives = 78/130 (60%), Gaps = 6/130 (4%)
Query: 302 PTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATK 361
P DG ++LV+KP+G TS V G RRL +KVGHAGTLDPMATGLL++ VG+AT+
Sbjct: 35 PASDG----ILLVDKPQGLTSHDVVGATRRLAATRKVGHAGTLDPMATGLLLLGVGRATR 90
Query: 362 LVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPW--EHIKDEDIRKAAASFRGEIWQ 419
+ G K Y+ RLG T+T DA+ V + + + ++KA A G+I Q
Sbjct: 91 FLTYLVGADKTYAATIRLGLETTTEDAEGEVTAAHGCRIDDLSGDRLQKALAGLTGQIQQ 150
Query: 420 VPPMFSAIKV 429
VP SAIKV
Sbjct: 151 VPSAVSAIKV 160
>gi|284030875|ref|YP_003380806.1| tRNA pseudouridine synthase B [Kribbella flavida DSM 17836]
gi|283810168|gb|ADB32007.1| tRNA pseudouridine synthase B [Kribbella flavida DSM 17836]
Length = 299
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 61/136 (44%), Positives = 78/136 (57%), Gaps = 7/136 (5%)
Query: 297 STELPPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCV 356
+T P DG +V+V+KP G TS TV ++RRL +KVGHAGTLDPMATG+L+V +
Sbjct: 2 TTSEPNVADG----IVVVDKPAGLTSHTVVARIRRLAGTRKVGHAGTLDPMATGILVVGL 57
Query: 357 GKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPV---IQREPWEHIKDEDIRKAAASF 413
+AT+L+ Q K Y LG T+T DA+ + + E I KA A F
Sbjct: 58 NRATRLLGHLQLADKSYDATVLLGATTTTDDAEGEIQTTASPAALGEVTAEAIEKAVAGF 117
Query: 414 RGEIWQVPPMFSAIKV 429
RG I QVP SAIKV
Sbjct: 118 RGRISQVPSKVSAIKV 133
>gi|50365098|ref|YP_053523.1| tRNA pseudouridine 5S synthase [Mesoplasma florum L1]
gi|54036465|sp|Q6F1I4.1|TRUB_MESFL RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|50363654|gb|AAT75639.1| tRNA pseudouridine 5S synthase [Mesoplasma florum L1]
Length = 286
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 81/121 (66%), Gaps = 3/121 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++++NKPKG T+ + KL+R + VKK+GHAGTLDP+ATG++I + TKL D +
Sbjct: 6 IIILNKPKGLTTNHLIQKLKRKLNVKKIGHAGTLDPLATGVVICLINNGTKLSDYFLNEN 65
Query: 371 KGYSGVFRLGEATSTWDADSPVI-QREPWEHIKDEDIRKAAASFRGEIW-QVPPMFSAIK 428
K Y +L +AT T+D+D +I ++EP++ I+ E + K A F G + Q PPM+SAIK
Sbjct: 66 KAYEVTMKLFQATDTYDSDGSIIEEQEPFK-IEQEQVEKVIAKFNGLAYEQEPPMYSAIK 124
Query: 429 V 429
+
Sbjct: 125 I 125
>gi|116492658|ref|YP_804393.1| tRNA pseudouridine synthase B [Pediococcus pentosaceus ATCC 25745]
gi|122265878|sp|Q03FS1.1|TRUB_PEDPA RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|116102808|gb|ABJ67951.1| tRNA pseudouridine synthase B [Pediococcus pentosaceus ATCC 25745]
Length = 299
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 52/121 (42%), Positives = 78/121 (64%), Gaps = 1/121 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ +NK +G TS V K+R +++ KKVGH+GTLDP G+L +CVG+ATK+VD G
Sbjct: 4 IIPINKERGMTSHDVVAKVRGILRTKKVGHSGTLDPSVDGVLPICVGRATKVVDYLMGFG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPW-EHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T D D V++ + E + DE I + + G + Q+PPM+SA+KV
Sbjct: 64 KVYQGSITLGFSTTTEDLDGEVVETKKLDEPLTDEQINQTLTAMTGTLIQIPPMYSAVKV 123
Query: 430 R 430
+
Sbjct: 124 K 124
>gi|255535080|ref|YP_003095451.1| tRNA pseudouridine synthase B [Flavobacteriaceae bacterium 3519-10]
gi|255341276|gb|ACU07389.1| tRNA pseudouridine synthase B [Flavobacteriaceae bacterium 3519-10]
Length = 233
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 57/128 (44%), Positives = 75/128 (58%), Gaps = 7/128 (5%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR-------RLVKVKKVGHAGTLDPMATGLLIVCVGKATK 361
G ++L++KP WTSF KL+ L K K+GHAGTLDP ATGLLIVC GK TK
Sbjct: 9 GQIILLDKPLDWTSFQAVNKLKYKLKREFNLPKKFKIGHAGTLDPRATGLLIVCTGKFTK 68
Query: 362 LVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVP 421
++ Q K Y ++G T ++D + P I + + HI I + SF GEI Q P
Sbjct: 69 IIPGIQDAPKEYQTEIKIGVQTESYDTEKPEILPQDFSHITSAQINEVLESFVGEIDQTP 128
Query: 422 PMFSAIKV 429
P+FSAIK+
Sbjct: 129 PVFSAIKI 136
>gi|225570600|ref|ZP_03779625.1| hypothetical protein CLOHYLEM_06702 [Clostridium hylemonae DSM
15053]
gi|225160613|gb|EEG73232.1| hypothetical protein CLOHYLEM_06702 [Clostridium hylemonae DSM
15053]
Length = 305
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 72/119 (60%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ V K KG+TS V KLR + + KK+GH GTLDP A G+L VC+GKAT+L D
Sbjct: 5 VINVYKEKGFTSHDVVAKLRGITRQKKIGHTGTLDPDAEGVLPVCMGKATRLCDMLTDKD 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y V LG T T D ++ + H+ +E +R+A SF GE Q PPM+SA+KV
Sbjct: 65 KTYEAVLLLGTETDTQDTSGVILAGKDTSHLTEETVRRAVLSFTGEYEQTPPMYSAVKV 123
>gi|148657854|ref|YP_001278059.1| tRNA pseudouridine synthase B [Roseiflexus sp. RS-1]
gi|148569964|gb|ABQ92109.1| tRNA pseudouridine synthase B [Roseiflexus sp. RS-1]
Length = 300
Score = 107 bits (268), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 52/116 (44%), Positives = 73/116 (62%), Gaps = 1/116 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQG-MIKG 372
++KP G TS V ++RRL ++VGHAGTLDP ATG+L+V +G AT+L++ Q +K
Sbjct: 7 IDKPAGMTSHDVVARIRRLSGQRRVGHAGTLDPAATGVLVVALGGATRLIEYVQHQTLKQ 66
Query: 373 YSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
Y LG T+T DAD +I R P + E + +A A RG IWQ PPM++A+
Sbjct: 67 YRATVCLGVTTTTDDADGEIIARHPLPPLDRETVERALAPLRGTIWQTPPMYAALH 122
>gi|406036519|ref|ZP_11043883.1| tRNA pseudouridine synthase B [Acinetobacter parvus DSM 16617 = CIP
108168]
Length = 297
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 73/118 (61%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+ L+NKP G +S + K+RRL +K GH G LDP+ATGLL +C+G+ATK
Sbjct: 12 VFLLNKPLGLSSNSALQKVRRLFNAQKAGHTGALDPLATGLLPICLGEATKFSHYLLDST 71
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y +LG+ T+T DA+ ++Q+ + E I + A FRG+I QVPPM+SA+K
Sbjct: 72 KRYQTTVKLGQTTTTGDAEGEILQQRETPALTAERIEQVLAQFRGDIQQVPPMYSALK 129
>gi|126662976|ref|ZP_01733974.1| putative tRNA pseudouridine synthase [Flavobacteria bacterium
BAL38]
gi|126624634|gb|EAZ95324.1| putative tRNA pseudouridine synthase [Flavobacteria bacterium
BAL38]
Length = 232
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/127 (44%), Positives = 75/127 (59%), Gaps = 7/127 (5%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR-------RLVKVKKVGHAGTLDPMATGLLIVCVGKATK 361
G ++L++KP W+SF KL+ +L K K+GHAGTLDP+ATGLLI+C GK TK
Sbjct: 9 GKVILIDKPLKWSSFQAVNKLKYALINELKLPKKFKIGHAGTLDPLATGLLIICTGKFTK 68
Query: 362 LVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVP 421
+ Q K Y+G LG T ++D ++ V P HI + I + F GEI Q P
Sbjct: 69 RITEIQAQTKEYTGTIVLGATTPSYDLETEVDATFPITHISEALILETTKQFIGEIDQKP 128
Query: 422 PMFSAIK 428
P+FSAIK
Sbjct: 129 PVFSAIK 135
>gi|406888274|gb|EKD34805.1| hypothetical protein ACD_75C02179G0004 [uncultured bacterium]
Length = 257
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/131 (42%), Positives = 80/131 (61%), Gaps = 2/131 (1%)
Query: 300 LPPTWDGPFGTMV-LVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGK 358
+P + + F V L++KP TSF V ++RR++++KKVGHAGTLDP ATGLLIVC G+
Sbjct: 8 VPGSSETTFAAGVFLIDKPPDITSFGVVSRIRRILRMKKVGHAGTLDPFATGLLIVCAGR 67
Query: 359 -ATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEI 417
AT+++ R+ K Y RLG T+T+D + V R + I + FRG +
Sbjct: 68 PATRIISRFMEGEKEYLATLRLGVETATYDTEGAVTARRSVGPLSAAMIEECLGRFRGRL 127
Query: 418 WQVPPMFSAIK 428
QVPP +SA+K
Sbjct: 128 LQVPPAYSALK 138
>gi|383484838|ref|YP_005393750.1| tRNA pseudouridine synthase b [Riemerella anatipestifer ATCC 11845
= DSM 15868]
gi|386320522|ref|YP_006016684.1| Pseudouridine synthase [Riemerella anatipestifer RA-GD]
gi|325335065|gb|ADZ11339.1| Pseudouridine synthase [Riemerella anatipestifer RA-GD]
gi|380459523|gb|AFD55207.1| tRNA pseudouridine synthase b [Riemerella anatipestifer ATCC 11845
= DSM 15868]
Length = 232
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 76/127 (59%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGK----LRRLVKVKKV--GHAGTLDPMATGLLIVCVGKATKL 362
G + LV+KP WTSF K L+R K+KK+ GHAGTLDP ATGLL+VC GKATK
Sbjct: 9 GQVFLVDKPLDWTSFQAVNKMKFKLKREFKLKKIKIGHAGTLDPRATGLLVVCTGKATKT 68
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+ Q K Y ++G T+++D + P I + I E I + SF GEI Q PP
Sbjct: 69 IPEIQNAPKEYHAEIKIGVQTASYDTEEPEILPQDISTITKEQILETLDSFVGEIDQTPP 128
Query: 423 MFSAIKV 429
+FSAIKV
Sbjct: 129 IFSAIKV 135
>gi|441521204|ref|ZP_21002865.1| tRNA pseudouridine synthase B [Gordonia sihwensis NBRC 108236]
gi|441459036|dbj|GAC60826.1| tRNA pseudouridine synthase B [Gordonia sihwensis NBRC 108236]
Length = 299
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 75/119 (63%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+K G TS V K R+ ++VGHAGTLDPMATG+L++ + +ATKL+
Sbjct: 11 LLVVDKAAGITSHDVVAKCRKAFNTRRVGHAGTLDPMATGVLVIGIERATKLLGLLSLTT 70
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ RLG++TST DA+ VI+ ++DE+I AS G+I QVP SAIKV
Sbjct: 71 KSYAATIRLGQSTSTDDAEGEVIESRDASGVRDEEIAAVVASLTGDIEQVPAKVSAIKV 129
>gi|253573570|ref|ZP_04850913.1| tRNA pseudouridine synthase B [Paenibacillus sp. oral taxon 786
str. D14]
gi|251847098|gb|EES75103.1| tRNA pseudouridine synthase B [Paenibacillus sp. oral taxon 786
str. D14]
Length = 305
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/115 (41%), Positives = 75/115 (65%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
++KP G+TS V K R ++K+K++GH GTLDP TG+L +C+G+AT++V+ Q + K Y
Sbjct: 10 IHKPAGFTSHDVVAKCRGILKMKRIGHTGTLDPAVTGVLPLCLGRATRMVEYLQDLPKEY 69
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
LG AT T D +I++ + +ED+R+ + F G I Q+PPM+SA+K
Sbjct: 70 EATLVLGVATDTEDMTGEIIEQVNEVQVTEEDVRRVLSRFVGTISQIPPMYSALK 124
>gi|407452880|ref|YP_006724605.1| pseudouridine synthase [Riemerella anatipestifer RA-CH-1]
gi|403313864|gb|AFR36705.1| Pseudouridine synthase [Riemerella anatipestifer RA-CH-1]
Length = 232
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 76/127 (59%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGK----LRRLVKVKKV--GHAGTLDPMATGLLIVCVGKATKL 362
G + LV+KP WTSF K L+R K+KK+ GHAGTLDP ATGLL+VC GKATK
Sbjct: 9 GQVFLVDKPLDWTSFQAVNKMKFKLKREFKLKKIKIGHAGTLDPRATGLLVVCTGKATKT 68
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+ Q K Y ++G T+++D + P I + I E I + SF GEI Q PP
Sbjct: 69 IPEIQNAPKEYHAEIKIGVQTASYDTEEPEILPQDISTITKEQILETLDSFVGEIDQTPP 128
Query: 423 MFSAIKV 429
+FSAIKV
Sbjct: 129 IFSAIKV 135
>gi|326335916|ref|ZP_08202093.1| tRNA pseudouridine synthase B [Capnocytophaga sp. oral taxon 338
str. F0234]
gi|325691880|gb|EGD33842.1| tRNA pseudouridine synthase B [Capnocytophaga sp. oral taxon 338
str. F0234]
Length = 236
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/126 (44%), Positives = 74/126 (58%), Gaps = 6/126 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKL------RRLVKVKKVGHAGTLDPMATGLLIVCVGKATKL 362
GT +L++KP W+SF KL R +K K+GHAGTLDP+ATGLLI+C GK TK
Sbjct: 7 GTTILIDKPLHWSSFQAVNKLKWAIMKRYHLKKFKIGHAGTLDPLATGLLILCTGKHTKQ 66
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+ Q K Y+G LG T ++D ++ + P HI E I + F GE+ Q PP
Sbjct: 67 IPFIQDAPKTYTGTITLGATTPSYDLETKINATFPTTHITPELIEEIRLQFIGELTQAPP 126
Query: 423 MFSAIK 428
+FSAIK
Sbjct: 127 LFSAIK 132
>gi|218290091|ref|ZP_03494253.1| tRNA pseudouridine synthase B [Alicyclobacillus acidocaldarius
LAA1]
gi|218239800|gb|EED06989.1| tRNA pseudouridine synthase B [Alicyclobacillus acidocaldarius
LAA1]
Length = 302
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 77/119 (64%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP+G TS V ++RR + V++VGHAGTLDPMATGLL++CVG+ T+L++
Sbjct: 7 VLLIDKPQGMTSHDVVNRVRRKLGVRRVGHAGTLDPMATGLLMICVGRVTRLLEYLGQGD 66
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K YSG G T T DA+ V+ + P + +R+AA GEI Q PP +SA+ +
Sbjct: 67 KEYSGTVVFGVGTDTDDAEGTVVAQAPATGLDLAAVRQAALRLTGEIRQRPPQYSAVHI 125
>gi|395203879|ref|ZP_10394922.1| tRNA pseudouridine synthase B [Propionibacterium humerusii P08]
gi|422439577|ref|ZP_16516398.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL037PA3]
gi|422471817|ref|ZP_16548308.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL037PA2]
gi|422571829|ref|ZP_16647406.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL044PA1]
gi|313836836|gb|EFS74550.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL037PA2]
gi|314929752|gb|EFS93583.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL044PA1]
gi|314972185|gb|EFT16282.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL037PA3]
gi|328907610|gb|EGG27374.1| tRNA pseudouridine synthase B [Propionibacterium humerusii P08]
Length = 298
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/123 (49%), Positives = 75/123 (60%), Gaps = 1/123 (0%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P G +V VNKP G TS V G++RRL+ +KVGHAGTLDPMA+G+L+V V +AT+L+
Sbjct: 8 PSGILV-VNKPAGPTSHQVVGRVRRLLGTRKVGHAGTLDPMASGVLVVGVNRATRLLGHL 66
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
K Y RLG +T T DA+ V I DE IR A + GEI QVP SA
Sbjct: 67 ALHDKDYIATMRLGVSTVTDDAEGDVTATTDASAIDDEAIRAAMSRQVGEIQQVPTAVSA 126
Query: 427 IKV 429
IKV
Sbjct: 127 IKV 129
>gi|262341125|ref|YP_003283980.1| tRNA-pseudouridine synthase I [Blattabacterium sp. (Blattella
germanica) str. Bge]
gi|262272462|gb|ACY40370.1| tRNA-pseudouridine synthase I [Blattabacterium sp. (Blattella
germanica) str. Bge]
Length = 237
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 78/129 (60%), Gaps = 7/129 (5%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK-------KVGHAGTLDPMATGLLIVCVGKATK 361
G ++L++KP GWTSF + K++ + K+GHAGTLDP+ATGLLI+ GK TK
Sbjct: 11 GKILLIDKPWGWTSFEIVKKIKSFILTTIPKKGNLKIGHAGTLDPLATGLLIILTGKYTK 70
Query: 362 LVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVP 421
VD Q K Y+G+ +LG T ++D+++ HI + IRK + F GEI Q P
Sbjct: 71 KVDDIQNYKKTYTGIIKLGCETLSFDSETEEYNFSSISHITPQLIRKTSQKFVGEIDQYP 130
Query: 422 PMFSAIKVR 430
P FSA+K +
Sbjct: 131 PSFSALKTK 139
>gi|256851254|ref|ZP_05556643.1| tRNA pseudouridine synthase B [Lactobacillus jensenii 27-2-CHN]
gi|260660678|ref|ZP_05861593.1| tRNA pseudouridine synthase B [Lactobacillus jensenii 115-3-CHN]
gi|256616316|gb|EEU21504.1| tRNA pseudouridine synthase B [Lactobacillus jensenii 27-2-CHN]
gi|260548400|gb|EEX24375.1| tRNA pseudouridine synthase B [Lactobacillus jensenii 115-3-CHN]
Length = 295
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 87/129 (67%), Gaps = 4/129 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++++NK KG TS V KLR+++K +K+GHAGTLDP G+L + +G+ATKL++
Sbjct: 5 ILVINKSKGMTSGDVVYKLRKILKTRKIGHAGTLDPEVEGVLPIAIGQATKLIELMHERP 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPW-EHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+G LG +T ++D + V+QR+ E I E+I+K SF G+I QVPP++SA+KV
Sbjct: 65 KSYTGRGLLGFSTDSYDTEGKVLQRKAVSEKIPLEEIQKGMNSFLGKIDQVPPIYSAVKV 124
Query: 430 ---RVFHFS 435
R++ ++
Sbjct: 125 NGKRLYEYA 133
>gi|172036820|ref|YP_001803321.1| tRNA pseudouridine synthase B [Cyanothece sp. ATCC 51142]
gi|354554630|ref|ZP_08973934.1| tRNA pseudouridine synthase B [Cyanothece sp. ATCC 51472]
gi|171698274|gb|ACB51255.1| tRNA pseudouridine synthase B [Cyanothece sp. ATCC 51142]
gi|353553439|gb|EHC22831.1| tRNA pseudouridine synthase B [Cyanothece sp. ATCC 51472]
Length = 297
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/121 (46%), Positives = 79/121 (65%), Gaps = 2/121 (1%)
Query: 308 FGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQ 367
FG ++ +NKP G+TS K+RR +K+KKVGH GTLDP ATG+L + VGKAT+L+ +
Sbjct: 2 FG-LIALNKPSGFTSHDCVAKVRRCLKMKKVGHGGTLDPAATGVLPIAVGKATRLLP-FL 59
Query: 368 GMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAI 427
K Y + R G T+T D + VI+R+P ++ E I + F GEI Q+PPM+SAI
Sbjct: 60 PENKAYKAIIRFGVQTTTDDLEGEVIKRQPVPNLSIEQITPLFSQFLGEIAQIPPMYSAI 119
Query: 428 K 428
+
Sbjct: 120 Q 120
>gi|293192218|ref|ZP_06609387.1| tRNA pseudouridine synthase B [Actinomyces odontolyticus F0309]
gi|292820334|gb|EFF79327.1| tRNA pseudouridine synthase B [Actinomyces odontolyticus F0309]
Length = 339
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 73/119 (61%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
M++++KP+G TS V ++RRL +KVGH GTLDPMATG+L++ +GKATKL+ G
Sbjct: 1 MLVIDKPQGLTSHDVVSRVRRLAHTRKVGHGGTLDPMATGVLVIGIGKATKLLTWVSGHS 60
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y R G AT+T DA+ + +E + A A RG+I QVP SAIKV
Sbjct: 61 KEYRATIRFGVATNTDDAEGVATAAVGCASLSEEQLEAAFAPLRGDIMQVPSTVSAIKV 119
>gi|350562798|ref|ZP_08931621.1| tRNA pseudouridine synthase B [Thioalkalimicrobium aerophilum AL3]
gi|349779664|gb|EGZ34005.1| tRNA pseudouridine synthase B [Thioalkalimicrobium aerophilum AL3]
Length = 318
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/118 (48%), Positives = 73/118 (61%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VLV+KP G TS V ++ + + KK GH+GTLDP ATGLL VC+G+ATK+
Sbjct: 14 IVLVDKPVGMTSTEVVKQVVKAYRAKKAGHSGTLDPFATGLLPVCLGEATKVSSMLLASD 73
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y LG+ T T D D VI+ P + E I + ASFRGEI QVPPM+S+IK
Sbjct: 74 KRYIATLDLGQKTDTGDHDGEVIESLPVPDLTAEMIEQVLASFRGEIAQVPPMYSSIK 131
>gi|421766857|ref|ZP_16203625.1| tRNA pseudouridine synthase B [Lactococcus garvieae DCC43]
gi|407624653|gb|EKF51388.1| tRNA pseudouridine synthase B [Lactococcus garvieae DCC43]
Length = 301
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/118 (47%), Positives = 75/118 (63%), Gaps = 1/118 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V K GWTSF V KLR ++K KK+GH GTLDP TG+L V VGKAT+L++ + K Y
Sbjct: 7 VYKEAGWTSFDVVAKLRGILKTKKIGHGGTLDPQVTGVLPVAVGKATRLLEYMEEAGKVY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWE-HIKDEDIRKAAASFRGEIWQVPPMFSAIKVR 430
G +G +T T DA+ VI+R + + +I +F GEI QVPPM+SA+KV+
Sbjct: 67 EGEVTIGFSTETEDAEGAVIERTQVPLTLSESEIDACMRNFLGEIQQVPPMYSAVKVK 124
>gi|377830766|ref|ZP_09813758.1| tRNA pseudouridine synthase B [Lactobacillus mucosae LM1]
gi|377555384|gb|EHT17071.1| tRNA pseudouridine synthase B [Lactobacillus mucosae LM1]
Length = 303
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/115 (46%), Positives = 75/115 (65%), Gaps = 1/115 (0%)
Query: 316 KPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSG 375
K +G TSF +LRR++ KK+GH+GTLDP G+L +CVG+ATK+V+ K Y G
Sbjct: 15 KERGMTSFDCVSRLRRILHTKKIGHSGTLDPNVDGVLPICVGQATKVVEFLMASGKQYVG 74
Query: 376 VFRLGEATSTWDADSPVIQREPWEHIKDED-IRKAAASFRGEIWQVPPMFSAIKV 429
+G+AT+T D D V+ ++P DED I++A G+I Q+PPM+SAIKV
Sbjct: 75 ELLVGQATTTQDLDGEVVAQKPVTAPIDEDTIKQAMQELTGDIVQIPPMYSAIKV 129
>gi|307565600|ref|ZP_07628080.1| tRNA pseudouridine synthase B [Prevotella amnii CRIS 21A-A]
gi|307345759|gb|EFN91116.1| tRNA pseudouridine synthase B [Prevotella amnii CRIS 21A-A]
Length = 233
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/126 (44%), Positives = 76/126 (60%), Gaps = 5/126 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLV-KVK----KVGHAGTLDPMATGLLIVCVGKATKLV 363
G ++ ++KP G TSF +R L KV K+GHAGTLDP+ATG+LI+ G+ TKL+
Sbjct: 6 GVIIPIDKPYGITSFKALAHIRYLCSKVNDGKVKIGHAGTLDPLATGVLILATGRKTKLI 65
Query: 364 DRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPM 423
+ Q K Y +LG T ++D + + P HI +E IR A SF GEI QVPP
Sbjct: 66 ESLQAHTKEYVATLQLGATTDSYDMEHEENESFPTAHITEELIRDALQSFVGEIQQVPPT 125
Query: 424 FSAIKV 429
+SA+KV
Sbjct: 126 YSAVKV 131
>gi|168216970|ref|ZP_02642595.1| tRNA pseudouridine synthase B [Clostridium perfringens NCTC 8239]
gi|182380913|gb|EDT78392.1| tRNA pseudouridine synthase B [Clostridium perfringens NCTC 8239]
Length = 294
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 76/125 (60%), Gaps = 3/125 (2%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+ K G TSF V +RR+ K+KKVGH GTLDP A+G+L VC+GKATK++D K Y
Sbjct: 7 IYKNTGMTSFDVVAIVRRVAKMKKVGHTGTLDPAASGVLPVCLGKATKIIDYIMENKKVY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK---VR 430
+LG T T+D + V++ + HI + I SF G I QVPPM+SA+K VR
Sbjct: 67 RVNLKLGMVTDTYDLEGEVLREKDASHITKDKILNCINSFVGTIDQVPPMYSALKQNGVR 126
Query: 431 VFHFS 435
++ +
Sbjct: 127 LYELA 131
>gi|402837027|ref|ZP_10885558.1| tRNA pseudouridine(55) synthase [Mogibacterium sp. CM50]
gi|402270043|gb|EJU19312.1| tRNA pseudouridine(55) synthase [Mogibacterium sp. CM50]
Length = 314
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 75/119 (63%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ +NKP+G+TS V +LRR + +K+VGH GTLDPMATG+L VC GK+T++++ Y
Sbjct: 6 VININKPEGYTSHDVVARLRRRLGIKRVGHTGTLDPMATGVLPVCYGKSTRIIEYYDHDW 65
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y LG+ + T D+ V++ + ED+ +RG I Q+PP +SA+K+
Sbjct: 66 KTYEAELELGKVSDTLDSTGEVVEERSAAGVTREDVLALEPMYRGTITQIPPRYSALKI 124
>gi|261367196|ref|ZP_05980079.1| tRNA pseudouridine synthase B [Subdoligranulum variabile DSM 15176]
gi|282570794|gb|EFB76329.1| tRNA pseudouridine synthase B [Subdoligranulum variabile DSM 15176]
Length = 297
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/116 (46%), Positives = 71/116 (61%), Gaps = 1/116 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V+KP GWTSF V KLR + +K+GH+GTLDPMATG+L V +GKAT DR K Y
Sbjct: 10 VDKPAGWTSFDVLAKLRGALGTRKLGHSGTLDPMATGVLAVFIGKATAAADRQLNHDKTY 69
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
R G+ T T D V++ P I +E++R F GE Q+PPM+SA+K+
Sbjct: 70 EATLRFGQRTDTGDITGTVLETAPVT-IGEEELRAVLPRFMGEQMQLPPMYSAVKI 124
>gi|225010158|ref|ZP_03700630.1| tRNA pseudouridine synthase B [Flavobacteria bacterium MS024-3C]
gi|225005637|gb|EEG43587.1| tRNA pseudouridine synthase B [Flavobacteria bacterium MS024-3C]
Length = 238
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 77/126 (61%), Gaps = 6/126 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK------KVGHAGTLDPMATGLLIVCVGKATKL 362
G ++L++KP W+S+ ++ +K K KVGHAGTLDP+ATGLLI+C GK TK
Sbjct: 14 GQILLIDKPLHWSSYQAVNAVKWGIKTKFNIKKIKVGHAGTLDPLATGLLIICTGKFTKK 73
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+ QG IK Y+G LG+ T ++D ++ EHI ++ + A F G+I Q PP
Sbjct: 74 IAELQGQIKTYTGTISLGKTTPSYDLETEFNADFNTEHITEQQLLSTAELFTGDIQQRPP 133
Query: 423 MFSAIK 428
+FSA+K
Sbjct: 134 VFSALK 139
>gi|154254061|ref|YP_001414885.1| tRNA pseudouridine synthase B [Parvibaculum lavamentivorans DS-1]
gi|154158011|gb|ABS65228.1| tRNA pseudouridine synthase B [Parvibaculum lavamentivorans DS-1]
Length = 307
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/118 (49%), Positives = 74/118 (62%), Gaps = 1/118 (0%)
Query: 312 VLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIK 371
V+V+KP G TS V ++RR +K GHAGTLDP+A+G+L V +G+ATK V K
Sbjct: 14 VVVDKPVGPTSSDVVNRIRRAFNAQKAGHAGTLDPLASGILPVALGEATKTVPFMIDAAK 73
Query: 372 GYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
GY R GEAT+T DA+ V + P D +I A+FRGEI QVPP FSAIK+
Sbjct: 74 GYRFTIRFGEATTTHDAEGEVTETSP-RRPSDAEIEAGFAAFRGEIQQVPPAFSAIKI 130
>gi|414074291|ref|YP_006999508.1| tRNA pseudouridine synthase B [Lactococcus lactis subsp. cremoris
UC509.9]
gi|413974211|gb|AFW91675.1| tRNA pseudouridine synthase B [Lactococcus lactis subsp. cremoris
UC509.9]
Length = 330
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 77/117 (65%), Gaps = 1/117 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V K GWTSF V KLR ++K KK+GH GTLDP TG+L + VGK+T+L++ + K Y
Sbjct: 11 VYKEAGWTSFDVVAKLRCILKTKKIGHGGTLDPSVTGVLPIAVGKSTRLLEYMEAAGKIY 70
Query: 374 SGVFRLGEATSTWDADSPVIQREPWE-HIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
G +G +T T DAD ++ + P + ++ + +I A + F G+I Q+PPM+SA+K+
Sbjct: 71 EGQLTIGFSTETEDADGAIVNQTPVKNNLTESEIDSAMSRFVGKIKQIPPMYSAVKI 127
>gi|406884308|gb|EKD31740.1| tRNA pseudouridine synthase B [uncultured bacterium]
Length = 250
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/126 (46%), Positives = 77/126 (61%), Gaps = 6/126 (4%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLR-RL-----VKVKKVGHAGTLDPMATGLLIVCVGKAT 360
P G ++ V+KP WTS V K++ RL +K KVGHAGTLDP+ATG+L++CVGKAT
Sbjct: 27 PSGFVISVDKPYRWTSADVVRKIKFRLQRSFGLKNIKVGHAGTLDPLATGILLICVGKAT 86
Query: 361 KLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQV 420
K+ ++ Q K Y R G T ++D + + PWEHI E I F GEI Q+
Sbjct: 87 KVAEQLQAQPKEYIAGIRFGATTPSFDLEKEIDNHFPWEHITQELIESKLPQFIGEIDQI 146
Query: 421 PPMFSA 426
PP+FSA
Sbjct: 147 PPVFSA 152
>gi|125624242|ref|YP_001032725.1| tRNA pseudouridine synthase B [Lactococcus lactis subsp. cremoris
MG1363]
gi|389854599|ref|YP_006356843.1| tRNA pseudouridine synthase B [Lactococcus lactis subsp. cremoris
NZ9000]
gi|189036533|sp|A2RL47.1|TRUB_LACLM RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|124493050|emb|CAL98013.1| tRNA pseudouridine synthase B [Lactococcus lactis subsp. cremoris
MG1363]
gi|300071021|gb|ADJ60421.1| tRNA pseudouridine synthase B [Lactococcus lactis subsp. cremoris
NZ9000]
Length = 330
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 77/117 (65%), Gaps = 1/117 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V K GWTSF V KLR ++K KK+GH GTLDP TG+L + VGK+T+L++ + K Y
Sbjct: 11 VYKEAGWTSFDVVAKLRGILKTKKIGHGGTLDPSVTGVLPIAVGKSTRLLEYMEAAGKIY 70
Query: 374 SGVFRLGEATSTWDADSPVIQREPWE-HIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
G +G +T T DAD ++ + P + ++ + +I A + F G+I Q+PPM+SA+K+
Sbjct: 71 EGQVTIGFSTETEDADGAIVNQTPVKNNLTESEIDSAMSHFVGKIKQIPPMYSAVKI 127
>gi|189485241|ref|YP_001956182.1| tRNA pseudouridine synthase B [uncultured Termite group 1 bacterium
phylotype Rs-D17]
gi|226708678|sp|B1GZN9.1|TRUB_UNCTG RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|170287200|dbj|BAG13721.1| tRNA pseudouridine synthase B [uncultured Termite group 1 bacterium
phylotype Rs-D17]
Length = 230
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 75/118 (63%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP G TSF K+++++ V+K GH GTLDP +TGLL+V +GKATKL ++
Sbjct: 11 LLLLDKPFGITSFDAVYKIKKVLNVEKTGHCGTLDPASTGLLLVLMGKATKLQAKFMKKD 70
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y F LG T + D D VI +I E I+K F GEI+Q+PPM+SA+K
Sbjct: 71 KVYLSSFLLGMVTDSGDLDGKVISENSVLNINIEKIKKMVEMFEGEIFQIPPMYSALK 128
>gi|297206121|ref|ZP_06923516.1| tRNA pseudouridine synthase B [Lactobacillus jensenii JV-V16]
gi|297149247|gb|EFH29545.1| tRNA pseudouridine synthase B [Lactobacillus jensenii JV-V16]
Length = 245
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 87/129 (67%), Gaps = 4/129 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++++NK KG TS V KLR+++K +K+GHAGTLDP G+L + +G+ATKL++
Sbjct: 5 ILVINKSKGMTSGDVVYKLRKILKTRKIGHAGTLDPEVEGVLPIAIGQATKLIELMHERP 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPW-EHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+G LG +T ++D + V+QR+ E I E+I+K SF G+I QVPP++SA+KV
Sbjct: 65 KSYTGRGLLGFSTDSYDTEGKVLQRKAVSEKIPLEEIQKGMNSFLGKIDQVPPIYSAVKV 124
Query: 430 ---RVFHFS 435
R++ ++
Sbjct: 125 NGKRLYEYA 133
>gi|339498326|ref|ZP_08659302.1| tRNA pseudouridine synthase B [Leuconostoc pseudomesenteroides KCTC
3652]
Length = 302
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/120 (49%), Positives = 74/120 (61%), Gaps = 1/120 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++VNKP+G TSF V ++RR+ KKVGHAGTLDP G+L+V +GKATKL+D Q
Sbjct: 10 VLIVNKPRGVTSFDVVRQVRRMFGQKKVGHAGTLDPSVAGVLVVALGKATKLIDELQTRP 69
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG AT T D D VI + I I A S G I Q+PPM+SA+KV
Sbjct: 70 KRYVGEITLGFATETEDLDGAVIATRAIDIPITAAKIDIAIKSLNGSIKQMPPMYSAVKV 129
>gi|440780950|ref|ZP_20959421.1| tRNA pseudouridine synthase B [Clostridium pasteurianum DSM 525]
gi|440221538|gb|ELP60743.1| tRNA pseudouridine synthase B [Clostridium pasteurianum DSM 525]
Length = 289
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/116 (46%), Positives = 74/116 (63%), Gaps = 1/116 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V K TSF V +R+L K+KKVGH GTLDP+ATG+L +C+GKATKLVD K Y
Sbjct: 7 VYKKADMTSFDVVRIVRKLSKIKKVGHTGTLDPLATGVLPICIGKATKLVDYIMDDFKVY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
+LG + T+D + +I+ +I ++DI SF+G I Q+PPM+SA+KV
Sbjct: 67 DAALKLGVTSDTYDKEGSIIENN-CVNIAEKDIINTVKSFQGTIEQIPPMYSALKV 121
>gi|372325016|ref|ZP_09519605.1| tRNA pseudouridine synthase B [Oenococcus kitaharae DSM 17330]
gi|366983824|gb|EHN59223.1| tRNA pseudouridine synthase B [Oenococcus kitaharae DSM 17330]
Length = 298
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 77/123 (62%), Gaps = 1/123 (0%)
Query: 308 FGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQ 367
+ +VL++KP G TSF V K+R++ K+VGH GTLDP TGLL++ +GKATKL+D Q
Sbjct: 2 YNGIVLIDKPAGMTSFDVVSKMRQVFHQKQVGHTGTLDPSVTGLLVIVLGKATKLIDFLQ 61
Query: 368 GMIKGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSA 426
K Y LG T T D D +I+ P + I + +++ +F G+ QVPPM+SA
Sbjct: 62 QSEKQYCADMILGIKTDTQDLDGQIIETLPLKKPISELKLQQTLTTFLGQNLQVPPMYSA 121
Query: 427 IKV 429
IK+
Sbjct: 122 IKI 124
>gi|407275670|ref|ZP_11104140.1| tRNA pseudouridine synthase B [Rhodococcus sp. P14]
Length = 305
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 74/119 (62%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+K G TS V + RRL+ +KVGHAGTLDPMATG+L++ V +ATK++
Sbjct: 14 LLVVDKDAGMTSHDVVARCRRLLGTRKVGHAGTLDPMATGVLVLGVERATKILGLLALTT 73
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ RLG++T T DAD V+ + DE I A A+ G+I QVP SAIKV
Sbjct: 74 KAYAATIRLGQSTVTDDADGEVLATTDAAAVTDEAIATAVAALTGDISQVPASVSAIKV 132
>gi|33865080|ref|NP_896639.1| tRNA pseudouridine synthase B [Synechococcus sp. WH 8102]
gi|37088064|sp|P59884.1|TRUB_SYNPX RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|33638764|emb|CAE07059.1| putative tRNA pseudouridine 55 synthase [Synechococcus sp. WH 8102]
Length = 291
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 79/125 (63%), Gaps = 2/125 (1%)
Query: 305 DGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVD 364
DGPFG V+++KP G TS + +LRR +K+VGH GTLDP TG+L + +G AT+L+
Sbjct: 2 DGPFG-FVVIDKPAGHTSHSCVSRLRRCYGLKRVGHGGTLDPAVTGVLPIALGPATRLLP 60
Query: 365 RYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMF 424
G K Y GV +LG TS+ D + ++++ PW ++ E++ A A FRG I Q PP
Sbjct: 61 YLPG-DKTYRGVIQLGSITSSDDLEGELLRQAPWPDLQPEELEVALAPFRGPIQQRPPQV 119
Query: 425 SAIKV 429
SA+ V
Sbjct: 120 SAVHV 124
>gi|210612471|ref|ZP_03289329.1| hypothetical protein CLONEX_01530 [Clostridium nexile DSM 1787]
gi|210151579|gb|EEA82586.1| hypothetical protein CLONEX_01530 [Clostridium nexile DSM 1787]
Length = 303
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/116 (46%), Positives = 71/116 (61%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+ K KG+TS V KLR ++ KK+GH GTLDP ATG+L VC+GKATKL D K Y
Sbjct: 8 IRKEKGFTSHDVVAKLRGILGQKKIGHTGTLDPDATGVLPVCLGKATKLCDMLTDKDKTY 67
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
V LG+AT T D V+ + + I ++ + + F GE QVPPM+SA+KV
Sbjct: 68 ETVLLLGKATDTQDISGTVLSEKAMDGIDNDAVERCIGEFVGEYLQVPPMYSALKV 123
>gi|220931631|ref|YP_002508539.1| tRNA pseudouridine 55 synthase [Halothermothrix orenii H 168]
gi|219992941|gb|ACL69544.1| tRNA pseudouridine 55 synthase [Halothermothrix orenii H 168]
Length = 303
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 74/119 (62%), Gaps = 1/119 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + KP G TSF V +R++ VKK GH GTLDP A+G+L VC+GK TK++ +
Sbjct: 7 IISIIKPPGMTSFDVVAWIRKMYSVKKAGHTGTLDPAASGVLPVCLGKGTKIIPYLPDEV 66
Query: 371 KGYSGVFRLGEATSTWDADSPVI-QREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
KGY LG T T D++ +I + + WE I D + K + F+G I QVPPM+SA+K
Sbjct: 67 KGYVAEITLGVKTDTLDSEGQIIEENQKWESITDSHLNKVISDFQGVIEQVPPMYSAVK 125
>gi|325954125|ref|YP_004237785.1| tRNA pseudouridine synthase B [Weeksella virosa DSM 16922]
gi|323436743|gb|ADX67207.1| tRNA pseudouridine synthase B [Weeksella virosa DSM 16922]
Length = 230
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/127 (46%), Positives = 77/127 (60%), Gaps = 8/127 (6%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR-------RLVKVKKVGHAGTLDPMATGLLIVCVGKATK 361
G + L++KP WTSF V K+R +L K+K VGHAGTLDP ATGLLIVC GK TK
Sbjct: 9 GQVFLIDKPLDWTSFDVVNKIRWNLRKTYQLKKIK-VGHAGTLDPKATGLLIVCCGKMTK 67
Query: 362 LVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVP 421
+D+ Q K Y+G +L T T+D +S + H+ +E I + F G+I QVP
Sbjct: 68 QIDQIQAQHKTYTGTIKLDATTPTYDLESEEDCQFSTAHLTEEKIHETTKQFIGKIDQVP 127
Query: 422 PMFSAIK 428
P+ SAIK
Sbjct: 128 PLHSAIK 134
>gi|331090936|ref|ZP_08339778.1| hypothetical protein HMPREF9477_00421 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330405158|gb|EGG84694.1| hypothetical protein HMPREF9477_00421 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 303
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/116 (46%), Positives = 71/116 (61%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V K KG+TS V KLR +V KK+GH GTLDP ATG+L VC+GKATKL D K Y
Sbjct: 8 VYKEKGYTSHDVVAKLRGIVGQKKIGHTGTLDPDATGVLPVCLGKATKLCDMLTDKDKTY 67
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
V LG+ T T D V++ + + + +E +R+ F G Q+PPM+SA+KV
Sbjct: 68 ETVLLLGQVTDTQDTGGEVLETKNTDALTEEQVREVICGFVGRYEQIPPMYSALKV 123
>gi|338533272|ref|YP_004666606.1| tRNA pseudouridine synthase B [Myxococcus fulvus HW-1]
gi|337259368|gb|AEI65528.1| tRNA pseudouridine synthase B [Myxococcus fulvus HW-1]
Length = 289
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 75/119 (63%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++++KP G TSF V ++R L+++KKVGH GTLDP+ATG+L +C+G+ATK+
Sbjct: 4 VLVIDKPTGPTSFDVVRQVRSLLRIKKVGHTGTLDPLATGVLPLCLGEATKVAGFITEGD 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y RLG T T DA+ V + P + I A A FRG QVPPM+SA+KV
Sbjct: 64 KAYDATVRLGAETDTLDAEGQVTAQAPVPALTPALIEAALARFRGTFDQVPPMYSAVKV 122
>gi|334143958|ref|YP_004537114.1| tRNA pseudouridine synthase B [Thioalkalimicrobium cyclicum ALM1]
gi|333964869|gb|AEG31635.1| tRNA pseudouridine synthase B [Thioalkalimicrobium cyclicum ALM1]
Length = 318
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 73/118 (61%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VLV+KP G TS V ++ + + KK GH+GTLDP ATGLL VC+G+ATK+
Sbjct: 14 IVLVDKPAGMTSTEVVKRVIKAYRAKKAGHSGTLDPFATGLLPVCLGEATKVSSMLLASD 73
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y + LG+ T T D D VI+ P + + I + SFRGEI Q+PPM+S+IK
Sbjct: 74 KRYIAILDLGQKTDTGDRDGEVIETLPVPELTAQSIEQVLQSFRGEIAQIPPMYSSIK 131
>gi|281491622|ref|YP_003353602.1| tRNA pseudouridine synthase B [Lactococcus lactis subsp. lactis
KF147]
gi|281375340|gb|ADA64853.1| tRNA pseudouridine synthase B [Lactococcus lactis subsp. lactis
KF147]
Length = 329
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 75/117 (64%), Gaps = 1/117 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V K GWTSF V KLR ++K KK+GH GTLDP TG+L V VGK+T+L++ + K Y
Sbjct: 11 VYKEAGWTSFDVVAKLRGILKTKKIGHGGTLDPSVTGVLPVAVGKSTRLLEYMEAAGKIY 70
Query: 374 SGVFRLGEATSTWDADSPVIQREPWE-HIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
G +G +T T DAD V+ + P E + + +I +F G+I Q+PPM+SA+K+
Sbjct: 71 EGEVTIGFSTETEDADGEVVSKTPVERELTESEIDSVMKNFIGKIKQIPPMYSAVKI 127
>gi|149196217|ref|ZP_01873272.1| tRNA pseudouridine synthase B [Lentisphaera araneosa HTCC2155]
gi|149140478|gb|EDM28876.1| tRNA pseudouridine synthase B [Lentisphaera araneosa HTCC2155]
Length = 245
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/127 (40%), Positives = 76/127 (59%), Gaps = 4/127 (3%)
Query: 302 PTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATK 361
P +DG ++LV+KPK WTS V +R + KVGH GTLDP+ATGL++V +GKATK
Sbjct: 11 PDFDG----ILLVDKPKEWTSHDVVNLVRNRYRFNKVGHCGTLDPLATGLIVVVIGKATK 66
Query: 362 LVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVP 421
L + K Y LG T++ D + + ++H+ +E I++ A F G+ Q+P
Sbjct: 67 LASKLTSDDKTYITEMTLGRETASHDEEGETTREASFDHVTEEQIQQCAKDFTGDQMQIP 126
Query: 422 PMFSAIK 428
PM SA+K
Sbjct: 127 PMVSALK 133
>gi|443490338|ref|YP_007368485.1| tRNA pseudouridine synthase B TruB [Mycobacterium liflandii 128FXT]
gi|442582835|gb|AGC61978.1| tRNA pseudouridine synthase B TruB [Mycobacterium liflandii 128FXT]
Length = 301
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/126 (44%), Positives = 76/126 (60%), Gaps = 2/126 (1%)
Query: 306 GP-FG-TMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLV 363
GP FG +V+V+KP TS V G+ RR+ ++VGHAGTLDPMATG+L++ + +ATK++
Sbjct: 7 GPGFGPGIVVVDKPGAMTSHDVVGRCRRIFGTRRVGHAGTLDPMATGVLVIGIERATKIL 66
Query: 364 DRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPM 423
K Y+ RLG+ TST DA+ + EH+ E I A G+I QVP
Sbjct: 67 GLLTATSKSYAATIRLGQTTSTEDAEGEPLASVSAEHVAPEAIAAAILDLTGDIRQVPSA 126
Query: 424 FSAIKV 429
SAIKV
Sbjct: 127 VSAIKV 132
>gi|386577970|ref|YP_006074376.1| tRNA pseudouridine synthase B [Streptococcus suis GZ1]
gi|292558433|gb|ADE31434.1| tRNA pseudouridine synthase B [Streptococcus suis GZ1]
Length = 298
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 79/120 (65%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ V K G TS V KLR++++ KK+GH GTLDP TG+L + VGKAT++++ Q
Sbjct: 11 IINVKKEAGMTSHDVVFKLRKILQEKKIGHGGTLDPYVTGVLPIAVGKATRMIEYMQEEG 70
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVR 430
K Y G +G +T+T DA +++R P +I ++ + +A SF G I Q+PPM+SA+KV+
Sbjct: 71 KIYEGEITIGYSTTTEDASGDLVERTPVLYIAEQAVDEAMTSFVGTITQIPPMYSAVKVK 130
>gi|253751863|ref|YP_003025004.1| tRNA pseudouridine synthase B [Streptococcus suis SC84]
gi|253753686|ref|YP_003026827.1| tRNA pseudouridine synthase B [Streptococcus suis P1/7]
gi|386580026|ref|YP_006076431.1| tRNA pseudouridine synthase B [Streptococcus suis JS14]
gi|386582051|ref|YP_006078455.1| tRNA pseudouridine synthase B [Streptococcus suis SS12]
gi|386588239|ref|YP_006084640.1| tRNA pseudouridine synthase B [Streptococcus suis A7]
gi|251816152|emb|CAZ51776.1| tRNA pseudouridine synthase B [Streptococcus suis SC84]
gi|251819932|emb|CAR46022.1| tRNA pseudouridine synthase B [Streptococcus suis P1/7]
gi|319758218|gb|ADV70160.1| tRNA pseudouridine synthase B [Streptococcus suis JS14]
gi|353734197|gb|AER15207.1| tRNA pseudouridine synthase B [Streptococcus suis SS12]
gi|354985400|gb|AER44298.1| tRNA pseudouridine synthase B [Streptococcus suis A7]
Length = 292
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 79/120 (65%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ V K G TS V KLR++++ KK+GH GTLDP TG+L + VGKAT++++ Q
Sbjct: 5 IINVKKEAGMTSHDVVFKLRKILQEKKIGHGGTLDPYVTGVLPIAVGKATRMIEYMQEEG 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVR 430
K Y G +G +T+T DA +++R P +I ++ + +A SF G I Q+PPM+SA+KV+
Sbjct: 65 KIYEGEITIGYSTTTEDASGDLVERTPVLYIAEQAVDEAMTSFVGTITQIPPMYSAVKVK 124
>gi|330466370|ref|YP_004404113.1| tRNA pseudouridine synthase B [Verrucosispora maris AB-18-032]
gi|328809341|gb|AEB43513.1| tRNA pseudouridine synthase B [Verrucosispora maris AB-18-032]
Length = 294
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/119 (48%), Positives = 79/119 (66%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+KP G TS V +LRRL + ++VGH GTLDPMATG+L++ VG+AT+L+ G
Sbjct: 6 LIVVDKPGGMTSHDVVARLRRLARTRRVGHGGTLDPMATGVLVIGVGRATRLLTYVIGAD 65
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ RLG++T T DA+ VI P + DE IR A A+ GEI QVP SAIK+
Sbjct: 66 KTYAATIRLGQSTVTDDAEGDVISTAPAGGVTDEAIRAALAALTGEIDQVPSAVSAIKI 124
>gi|296139441|ref|YP_003646684.1| tRNA pseudouridine synthase B [Tsukamurella paurometabola DSM
20162]
gi|296027575|gb|ADG78345.1| tRNA pseudouridine synthase B [Tsukamurella paurometabola DSM
20162]
Length = 297
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 72/119 (60%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+KP G TS V + RR + +KVGHAGTLDPMATG+L++ + +ATKL+
Sbjct: 11 LIIVDKPAGLTSHDVVARCRRAMGTRKVGHAGTLDPMATGVLVIGIERATKLLGHLALTT 70
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K YS RLG +TST DA+ + + D D+ A A G+I QVP SAIKV
Sbjct: 71 KAYSATVRLGASTSTDDAEGEITGGAAAAGLSDADVIAAMAPLTGDIEQVPSTVSAIKV 129
>gi|402495404|ref|ZP_10842131.1| tRNA pseudouridine synthase B [Aquimarina agarilytica ZC1]
Length = 229
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 81/126 (64%), Gaps = 6/126 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK------KVGHAGTLDPMATGLLIVCVGKATKL 362
G +L++KP W+SF V KLR L++ + KVGHAGTLDP+ATGLL++C GK TK
Sbjct: 9 GQTLLIDKPLEWSSFQVVNKLRWLIRKQFDIKKIKVGHAGTLDPLATGLLLICTGKFTKT 68
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ QG IK Y+G LG T ++D ++ + P H+ +E I +A F G+I Q PP
Sbjct: 69 INELQGQIKEYTGTITLGTTTPSYDLETEFDAKYPTHHLTEEVIHEATKQFLGKIEQYPP 128
Query: 423 MFSAIK 428
+FSA+K
Sbjct: 129 VFSALK 134
>gi|441207386|ref|ZP_20973515.1| tRNA pseudouridine(55) synthase [Mycobacterium smegmatis MKD8]
gi|440627934|gb|ELQ89737.1| tRNA pseudouridine(55) synthase [Mycobacterium smegmatis MKD8]
Length = 282
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/110 (47%), Positives = 67/110 (60%)
Query: 320 WTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRL 379
TS V G+ RRL +KVGHAGTLDPMATG+L++ + +ATK++ K Y+ RL
Sbjct: 1 MTSHDVVGRCRRLFGTRKVGHAGTLDPMATGVLVIGIERATKILGLLTATDKSYAATIRL 60
Query: 380 GEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
G T+T DA+ V+ H+ DE I A A RG+I QVP SAIKV
Sbjct: 61 GRTTTTEDAEGEVVADVSARHVTDEQIHAAVADLRGDIEQVPSAVSAIKV 110
>gi|319950922|ref|ZP_08024799.1| tRNA pseudouridine synthase B [Dietzia cinnamea P4]
gi|319435415|gb|EFV90658.1| tRNA pseudouridine synthase B [Dietzia cinnamea P4]
Length = 303
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 72/119 (60%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G +S V G+LRR +KVGHAGTLDPMATG+L+V + +ATK++
Sbjct: 16 LVVVDKPGGMSSHDVVGRLRRYFGTRKVGHAGTLDPMATGVLVVGIERATKMLGLLALET 75
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y RLG+ T+T DA+ + DE I A A+ GEI QVP SAIKV
Sbjct: 76 KSYEATIRLGQTTTTDDAEGETTSTTDASAVTDEAIDAAVAALTGEIDQVPSAVSAIKV 134
>gi|404405081|ref|ZP_10996665.1| tRNA pseudouridine synthase B [Alistipes sp. JC136]
Length = 241
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/126 (46%), Positives = 79/126 (62%), Gaps = 5/126 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGK----LRRLVKVK-KVGHAGTLDPMATGLLIVCVGKATKLV 363
G + +++KP WTS V K LR+L K KVGHAGTLDP+A+G+L+VC+G+ATKLV
Sbjct: 18 GYIAVLDKPLRWTSTDVVRKVKFALRKLGYRKIKVGHAGTLDPLASGILLVCIGRATKLV 77
Query: 364 DRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPM 423
D Q K Y LG T ++D + + Q P+EHI E + +A AS GE Q PP+
Sbjct: 78 DALQAEEKEYIADVMLGATTPSYDLEHEIDQTYPYEHITREAVEEALASLTGERLQTPPV 137
Query: 424 FSAIKV 429
+SA K+
Sbjct: 138 YSAKKI 143
>gi|374673136|dbj|BAL51027.1| tRNA pseudouridine synthase B [Lactococcus lactis subsp. lactis
IO-1]
Length = 329
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 75/117 (64%), Gaps = 1/117 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V K GWTSF V KLR ++K KK+GH GTLDP TG+L V VGK+T+L++ + K Y
Sbjct: 11 VYKEAGWTSFDVVAKLRGILKTKKIGHGGTLDPSVTGVLPVAVGKSTRLLEYMEAAGKIY 70
Query: 374 SGVFRLGEATSTWDADSPVIQREPWE-HIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
G +G +T T DAD V+ + P E + + +I +F G+I Q+PPM+SA+K+
Sbjct: 71 EGEVTIGFSTETEDADGEVVSKTPVERELTESEIDSVMKNFIGKIKQIPPMYSAVKI 127
>gi|319637962|ref|ZP_07992728.1| tRNA pseudouridine synthase B [Neisseria mucosa C102]
gi|317401117|gb|EFV81772.1| tRNA pseudouridine synthase B [Neisseria mucosa C102]
Length = 304
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 74/122 (60%), Gaps = 1/122 (0%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P ++L++KP+G +S T K RRL + KK GH G LDP+ATGLL VC G+ATK
Sbjct: 9 PVNGVLLLDKPEGLSSNTALQKARRLFRAKKAGHTGVLDPLATGLLPVCFGEATKFAQYL 68
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
K Y+ +LGEA+ST DA+ +I + I + + A + G+I QVPPMFSA
Sbjct: 69 IDADKAYTATLKLGEASSTGDAEGEIIATARAD-ISLSEFQTACQALTGDIRQVPPMFSA 127
Query: 427 IK 428
+K
Sbjct: 128 LK 129
>gi|237742183|ref|ZP_04572664.1| tRNA pseudouridine synthase B [Fusobacterium sp. 4_1_13]
gi|256845456|ref|ZP_05550914.1| tRNA pseudouridine synthase B [Fusobacterium sp. 3_1_36A2]
gi|229429831|gb|EEO40043.1| tRNA pseudouridine synthase B [Fusobacterium sp. 4_1_13]
gi|256719015|gb|EEU32570.1| tRNA pseudouridine synthase B [Fusobacterium sp. 3_1_36A2]
Length = 287
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/128 (45%), Positives = 86/128 (67%), Gaps = 4/128 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++VNKPKG TSF V KL++++K KK+GH GTLDP+ATG+++VCVGKATKL +
Sbjct: 4 IIVVNKPKGITSFDVIRKLKKILKTKKIGHTGTLDPLATGVMLVCVGKATKLASDLEAKN 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV- 429
K Y+ F +G AT T+D + I E + E++ ++ F G I QVPPM+SAIK+
Sbjct: 64 KIYTADFDIGYATDTYDVEGKKIAENIIE-VSKENLEQSIKKFIGNIKQVPPMYSAIKID 122
Query: 430 --RVFHFS 435
+++H +
Sbjct: 123 GNKLYHLA 130
>gi|57234295|ref|YP_181704.1| tRNA pseudouridine synthase B [Dehalococcoides ethenogenes 195]
gi|91208077|sp|Q3Z7U5.1|TRUB_DEHE1 RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|57224743|gb|AAW39800.1| tRNA pseudouridine synthase B [Dehalococcoides ethenogenes 195]
Length = 300
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 77/125 (61%), Gaps = 3/125 (2%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+NKP G TSF V K+R + KKVGH G LDP ATG++ V +G AT+L++ + K Y
Sbjct: 7 INKPPGLTSFGVVSKVRHIYSQKKVGHGGMLDPSATGVIPVFLGSATRLIEYLSSVRKTY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK---VR 430
LG T ++D++ + R+ EHI + +R A F GEI Q+PPM+SA+K VR
Sbjct: 67 LAEIELGTETDSYDSEGEITSRKSCEHITADMVRNALPDFLGEITQIPPMYSAVKHRGVR 126
Query: 431 VFHFS 435
+++ +
Sbjct: 127 LYNLA 131
>gi|183981930|ref|YP_001850221.1| tRNA pseudouridine synthase B [Mycobacterium marinum M]
gi|183175256|gb|ACC40366.1| tRNA pseudouridine synthase B TruB [Mycobacterium marinum M]
Length = 301
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/126 (44%), Positives = 76/126 (60%), Gaps = 2/126 (1%)
Query: 306 GP-FG-TMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLV 363
GP FG +V+V+KP TS V G+ RR+ ++VGHAGTLDPMATG+L++ + +ATK++
Sbjct: 7 GPGFGPGIVVVDKPGAMTSHDVVGRCRRIFGTRRVGHAGTLDPMATGVLVIGIERATKIL 66
Query: 364 DRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPM 423
K Y+ RLG+ TST DA+ + EH+ E I A G+I QVP
Sbjct: 67 GLLTATSKSYAATIRLGQTTSTEDAEGEPLASVSAEHVAPEAIAAAILDLTGDIRQVPSA 126
Query: 424 FSAIKV 429
SAIKV
Sbjct: 127 VSAIKV 132
>gi|302865977|ref|YP_003834614.1| tRNA pseudouridine synthase B [Micromonospora aurantiaca ATCC
27029]
gi|315502537|ref|YP_004081424.1| tRNA pseudouridine synthase b [Micromonospora sp. L5]
gi|302568836|gb|ADL45038.1| tRNA pseudouridine synthase B [Micromonospora aurantiaca ATCC
27029]
gi|315409156|gb|ADU07273.1| tRNA pseudouridine synthase B [Micromonospora sp. L5]
Length = 294
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 79/119 (66%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+KP G TS V ++RRL + ++VGH GTLDPMATG+L++ VG+AT+L+ G
Sbjct: 6 LIVVDKPGGMTSHDVVARIRRLARTRRVGHGGTLDPMATGVLVIGVGRATRLLTYVIGAG 65
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ RLG+AT T DA+ V+ P + D+ +R A A+ GEI QVP SAIK+
Sbjct: 66 KSYAATIRLGQATVTDDAEGEVVATTPAGAVTDDGVRAALAALTGEIDQVPSAVSAIKI 124
>gi|300087635|ref|YP_003758157.1| tRNA pseudouridine synthase B [Dehalogenimonas lykanthroporepellens
BL-DC-9]
gi|299527368|gb|ADJ25836.1| tRNA pseudouridine synthase B [Dehalogenimonas lykanthroporepellens
BL-DC-9]
Length = 304
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 75/115 (65%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
++KP G TSF V +LRR++ ++GHAGTLDP+ATG+L V VG AT+ ++ + K Y
Sbjct: 13 IDKPAGMTSFQVVARLRRVIGRCRIGHAGTLDPLATGVLPVAVGAATRTIEFHHRHPKTY 72
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
G AT T+DA+ ++ + +K +I +A A FRGEI QVPP++SA+K
Sbjct: 73 RAEILFGIATDTYDAEGKIVSQADASSLKPAEIIQALADFRGEIQQVPPIYSALK 127
>gi|392396813|ref|YP_006433414.1| tRNA pseudouridine 55 synthase [Flexibacter litoralis DSM 6794]
gi|390527891|gb|AFM03621.1| tRNA pseudouridine 55 synthase [Flexibacter litoralis DSM 6794]
Length = 240
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/127 (43%), Positives = 79/127 (62%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVKK------VGHAGTLDPMATGLLIVCVGKATKL 362
G ++L++KP WTSF V K+R +K + VGHAGTLDP+ATGLLI+C GK TK
Sbjct: 11 GKVILIDKPLTWTSFDVVNKIRYTIKKYEQKKKVKVGHAGTLDPLATGLLILCSGKMTKQ 70
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +QG K Y G T+++D +S + ++ + E I A F+GEI QVPP
Sbjct: 71 IEDFQGQEKEYIAKITFGFTTASYDLESDLENQKDVSALTLEKIETALKDFQGEIDQVPP 130
Query: 423 MFSAIKV 429
+FSA++V
Sbjct: 131 IFSAVQV 137
>gi|258404624|ref|YP_003197366.1| tRNA pseudouridine synthase B [Desulfohalobium retbaense DSM 5692]
gi|257796851|gb|ACV67788.1| tRNA pseudouridine synthase B [Desulfohalobium retbaense DSM 5692]
Length = 323
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 77/118 (65%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++++NKP+G TS+ +++R + +K+GHAGTLDPMA+G+L+V +G+ATKL G
Sbjct: 14 LLILNKPQGPTSYGCLDQIKRHLGQRKIGHAGTLDPMASGVLVVLLGQATKLASYISGGD 73
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y G R+G AT T+D + V + PWEHI ED+ K A +R + Q P +SA K
Sbjct: 74 KIYRGHLRIGLATDTYDIEGAVEHQFPWEHITPEDVGKTVAEWRDLLEQEVPAYSAAK 131
>gi|389807675|ref|ZP_10204212.1| tRNA pseudouridine synthase B [Rhodanobacter thiooxydans LCS2]
gi|388443800|gb|EIL99935.1| tRNA pseudouridine synthase B [Rhodanobacter thiooxydans LCS2]
Length = 308
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 71/118 (60%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KP G +S +RRL++ K GH G LDP+ATGLL +C G+ATKL G
Sbjct: 15 IVLLDKPPGLSSNQALQTVRRLLRASKGGHTGALDPLATGLLPLCFGEATKLAGSLLGAR 74
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y RLG T T D++ V+Q+ P + D + A A RG I QVPPM+SA+K
Sbjct: 75 KAYLAECRLGVTTDTADSEGEVVQQRPVPELDDARVEAALARLRGRILQVPPMYSALK 132
>gi|297626624|ref|YP_003688387.1| tRNA pseudouridine synthase B [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
gi|296922389|emb|CBL56961.1| tRNA pseudouridine synthase B (tRNA pseudouridine 55 synthase)
[Propionibacterium freudenreichii subsp. shermanii
CIRM-BIA1]
Length = 298
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 74/119 (62%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+KP G TS V G+ R L+ +KVGHAGTLDPMATG+LIV V +AT+L+
Sbjct: 11 LLIVDKPAGLTSQQVVGRCRHLLGTRKVGHAGTLDPMATGVLIVGVNRATRLLGHLAMHD 70
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y RLG +T+T DA+ V+ + ++DE + A G+I QVP SAIKV
Sbjct: 71 KRYLATIRLGASTTTDDAEGEVVAQTDASGVEDEQVNAGIAGLTGQIDQVPSSVSAIKV 129
>gi|116511973|ref|YP_809189.1| tRNA pseudouridine synthase B [Lactococcus lactis subsp. cremoris
SK11]
gi|123025413|sp|Q02Z55.1|TRUB_LACLS RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|116107627|gb|ABJ72767.1| tRNA pseudouridine synthase B [Lactococcus lactis subsp. cremoris
SK11]
Length = 330
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 77/117 (65%), Gaps = 1/117 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V K GWTSF V KLR ++K KK+GH GTLDP TG+L + VGK+T+L++ + K Y
Sbjct: 11 VYKEAGWTSFDVVAKLRCILKTKKIGHGGTLDPSVTGVLPIAVGKSTRLLEYMEAAGKIY 70
Query: 374 SGVFRLGEATSTWDADSPVIQREPWE-HIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
G +G +T T DAD ++ + P + ++ + +I A + F G+I Q+PPM+SA+K+
Sbjct: 71 EGQVTIGFSTETEDADGAIVNQTPVKNNLTESEIDSAMSRFVGKIKQIPPMYSAVKI 127
>gi|297569832|ref|YP_003691176.1| tRNA pseudouridine synthase B [Desulfurivibrio alkaliphilus AHT2]
gi|296925747|gb|ADH86557.1| tRNA pseudouridine synthase B [Desulfurivibrio alkaliphilus AHT2]
Length = 241
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/116 (46%), Positives = 73/116 (62%), Gaps = 1/116 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGK-ATKLVDRYQGMIKG 372
V+KP G +SF + +RR +KKVGHAGTLDP A+GLL+VC+G+ AT+LVDR K
Sbjct: 9 VDKPAGPSSFRMVQLVRRATGIKKVGHAGTLDPFASGLLLVCIGRPATRLVDRLMVGDKE 68
Query: 373 YSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
Y +LG T+T D + ++ R P + + A +FRGE+WQ PP FSA K
Sbjct: 69 YEATVQLGVTTATHDPEGEILDRRPVTAAHFDALEAALDNFRGELWQSPPAFSAAK 124
>gi|342216368|ref|ZP_08709015.1| tRNA pseudouridine synthase B [Peptoniphilus sp. oral taxon 375
str. F0436]
gi|341587258|gb|EGS30658.1| tRNA pseudouridine synthase B [Peptoniphilus sp. oral taxon 375
str. F0436]
Length = 290
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/120 (44%), Positives = 75/120 (62%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L+NK KG+TS V R+ + +KK+GH GTLDPMA G+L + VGKATK+ D G
Sbjct: 7 ILLINKDKGFTSHDVVALCRKHLGLKKIGHTGTLDPMARGVLPILVGKATKISDYLMGQD 66
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVR 430
K Y G + G T T DAD +++ + +DI + F G+I QVPPM+SAIK++
Sbjct: 67 KVYEGTMQFGYRTDTLDADGEILETCTNKLFDKKDILDSMKVFTGKIDQVPPMYSAIKIK 126
>gi|15673108|ref|NP_267282.1| tRNA pseudouridine synthase B [Lactococcus lactis subsp. lactis
Il1403]
gi|13959590|sp|Q9CGH0.1|TRUB_LACLA RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|12724087|gb|AAK05224.1|AE006345_4 tRNA pseudouridine synthase B [Lactococcus lactis subsp. lactis
Il1403]
Length = 329
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/117 (44%), Positives = 75/117 (64%), Gaps = 1/117 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V K GWTSF V KLR ++K KK+GH GTLDP TG+L V VGK+T+L++ + K Y
Sbjct: 11 VYKEAGWTSFDVVAKLRGILKTKKIGHGGTLDPSVTGVLPVAVGKSTRLLEYMEAAGKIY 70
Query: 374 SGVFRLGEATSTWDADSPVIQREPWE-HIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
G +G +T T DAD ++ + P E + + +I +F G+I Q+PPM+SA+K+
Sbjct: 71 EGEVTIGFSTETEDADGEIVSKTPVERELTESEIDSVMKNFIGKIKQIPPMYSAVKI 127
>gi|385830667|ref|YP_005868480.1| tRNA pseudouridine synthase B [Lactococcus lactis subsp. lactis
CV56]
gi|418038881|ref|ZP_12677196.1| tRNA pseudouridine(38-40) synthase [Lactococcus lactis subsp.
cremoris CNCM I-1631]
gi|326406675|gb|ADZ63746.1| tRNA pseudouridine synthase B [Lactococcus lactis subsp. lactis
CV56]
gi|354692737|gb|EHE92545.1| tRNA pseudouridine(38-40) synthase [Lactococcus lactis subsp.
cremoris CNCM I-1631]
Length = 329
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/117 (44%), Positives = 75/117 (64%), Gaps = 1/117 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V K GWTSF V KLR ++K KK+GH GTLDP TG+L V VGK+T+L++ + K Y
Sbjct: 11 VYKEAGWTSFDVVAKLRGILKTKKIGHGGTLDPSVTGVLPVAVGKSTRLLEYMEAAGKIY 70
Query: 374 SGVFRLGEATSTWDADSPVIQREPWE-HIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
G +G +T T DAD ++ + P E + + +I +F G+I Q+PPM+SA+K+
Sbjct: 71 EGEVTIGFSTETEDADGEIVSKTPVERELTESEIDSVMKNFIGKIKQIPPMYSAVKI 127
>gi|406888110|gb|EKD34694.1| hypothetical protein ACD_75C02232G0001, partial [uncultured
bacterium]
Length = 200
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 75/119 (63%), Gaps = 1/119 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGK-ATKLVDRYQGM 369
+ L++KP TSF V +LRR++ +KKVGHAGTLDP ATGLLIVC G+ AT+++ R+
Sbjct: 16 IFLIDKPPDVTSFGVIRRLRRILGMKKVGHAGTLDPFATGLLIVCAGRQATRIIPRFMEG 75
Query: 370 IKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y +LG T+T D + V R P + +E + + FRG Q+PP +SA+K
Sbjct: 76 EKEYVATLQLGVETATHDTEGEVTARTPVGTLGNERLEECLGRFRGSQLQIPPAYSALK 134
>gi|56478757|ref|YP_160346.1| tRNA pseudouridine synthase B [Aromatoleum aromaticum EbN1]
gi|62901199|sp|Q5NZR9.1|TRUB_AROAE RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|56314800|emb|CAI09445.1| tRNA pseudouridine 55 synthase [Aromatoleum aromaticum EbN1]
Length = 308
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/118 (46%), Positives = 71/118 (60%), Gaps = 1/118 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP+G TS RRL+ K GH GTLDPMATGLL + +G+ATK
Sbjct: 17 VLLLDKPRGLTSNAALQTARRLLNAAKAGHTGTLDPMATGLLPLTLGEATKFSQMLLDAD 76
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y RLG T T DA+ I P H+ D+ IR+A A+ GEI QVPPM+SA+K
Sbjct: 77 KAYEATVRLGIETDTGDAEGAAIATAPV-HVTDDSIRQALAALTGEIEQVPPMYSALK 133
>gi|325672785|ref|ZP_08152481.1| tRNA pseudouridine synthase B [Rhodococcus equi ATCC 33707]
gi|325556662|gb|EGD26328.1| tRNA pseudouridine synthase B [Rhodococcus equi ATCC 33707]
Length = 308
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 73/119 (61%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+K G TS V + R+L+ +KVGHAGTLDPMATG+LI+ V +ATKL+
Sbjct: 16 LLIVDKEAGMTSHDVVSRCRKLLNTRKVGHAGTLDPMATGVLILGVERATKLLGLLALTT 75
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K YS RLG+AT+T DA+ V+ + DE I A G+I QVP SAIKV
Sbjct: 76 KSYSATIRLGQATTTDDAEGEVLTTADASAVTDEQIAAEIAKLTGDIQQVPASVSAIKV 134
>gi|419842121|ref|ZP_14365477.1| tRNA pseudouridine synthase B [Fusobacterium necrophorum subsp.
funduliforme ATCC 51357]
gi|386902748|gb|EIJ67570.1| tRNA pseudouridine synthase B [Fusobacterium necrophorum subsp.
funduliforme ATCC 51357]
Length = 285
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 76/120 (63%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V K KG +SF V LR++++ +K+GH GTLDP+ATG+LI+CVGKAT+L +
Sbjct: 4 IIVVKKEKGMSSFDVIRSLRKILQERKIGHTGTLDPLATGVLILCVGKATRLAQEIEAEE 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVR 430
K Y G T T+D + V+ + + E+ K ++G+I QVPPM+SAIK++
Sbjct: 64 KIYEAEMEFGYQTDTYDLEGKVVTESLKKKVSREEFEKVLEKWKGDILQVPPMYSAIKLQ 123
>gi|378823632|ref|ZP_09846242.1| tRNA pseudouridine synthase B [Sutterella parvirubra YIT 11816]
gi|378597552|gb|EHY30830.1| tRNA pseudouridine synthase B [Sutterella parvirubra YIT 11816]
Length = 327
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 77/127 (60%), Gaps = 2/127 (1%)
Query: 302 PTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATK 361
P D G M+L +KP G +S ++RR+V K GH GTLDP A+GLL +C G ATK
Sbjct: 5 PKGDAVDGVMLL-DKPVGMSSNHALQRVRRMVNAAKAGHTGTLDPAASGLLPLCFGNATK 63
Query: 362 LVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVP 421
+KGY+ +LGEAT T DA+ VI+ + +E + +AA SF G+I QVP
Sbjct: 64 FSADLLHAVKGYTARVKLGEATDTGDAEGDVIETSAAP-VTEEALLEAARSFLGDILQVP 122
Query: 422 PMFSAIK 428
PM+SA+K
Sbjct: 123 PMYSALK 129
>gi|254382101|ref|ZP_04997463.1| tRNA pseudouridine synthase B [Streptomyces sp. Mg1]
gi|194341008|gb|EDX21974.1| tRNA pseudouridine synthase B [Streptomyces sp. Mg1]
Length = 311
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/132 (43%), Positives = 77/132 (58%), Gaps = 2/132 (1%)
Query: 301 PPTWDGP--FGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGK 358
P GP G +V+V+KP G+TS V K+R + K ++VGHAGTLDPMATG+L++ V +
Sbjct: 9 PGGTSGPEAAGGLVIVDKPSGFTSHDVVAKMRGIAKTRRVGHAGTLDPMATGVLVLGVER 68
Query: 359 ATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIW 418
ATKL+ K Y G RLG+ T T DA+ + + E + K A GEI
Sbjct: 69 ATKLLGHLALTEKEYLGTIRLGQDTLTDDAEGEITSSTDASGVTREAVDKGIAKLSGEIM 128
Query: 419 QVPPMFSAIKVR 430
QVP SAIK++
Sbjct: 129 QVPSKVSAIKIK 140
>gi|108758349|ref|YP_630300.1| tRNA pseudouridine synthase B [Myxococcus xanthus DK 1622]
gi|108462229|gb|ABF87414.1| tRNA pseudouridine synthase B [Myxococcus xanthus DK 1622]
Length = 289
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 75/119 (63%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++++KP G TSF V ++R L+++KKVGH GTLDP+ATG+L +C+G+ATK+
Sbjct: 4 VLVIDKPTGPTSFDVVRQVRSLLRLKKVGHTGTLDPLATGVLPLCLGEATKVAGFITEGD 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y RLG T T DA+ V + P + I A A FRG QVPPM+SA+KV
Sbjct: 64 KAYDATVRLGSETDTLDAEGQVTAQAPVPALTPALIESALARFRGTFDQVPPMYSAVKV 122
>gi|425745947|ref|ZP_18863981.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii WC-323]
gi|425487093|gb|EKU53452.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii WC-323]
Length = 297
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 72/118 (61%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+ L+NKP G +S + K+RRL +K GH G LDP+ATGLL +C+G+ATK
Sbjct: 12 VFLLNKPLGLSSNSALQKVRRLFNAQKAGHTGALDPLATGLLPICLGEATKFSHYLLDST 71
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y +LG+ T+T D + ++Q+ + E I + A FRG+I QVPPM+SA+K
Sbjct: 72 KRYQTTVKLGQTTATGDVEGEILQQREVPALTAEGIEQVLAQFRGDIQQVPPMYSALK 129
>gi|415721839|ref|ZP_11468772.1| tRNA pseudouridine synthase B [Gardnerella vaginalis 00703Bmash]
gi|388060544|gb|EIK83236.1| tRNA pseudouridine synthase B [Gardnerella vaginalis 00703Bmash]
Length = 404
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/133 (46%), Positives = 76/133 (57%), Gaps = 10/133 (7%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P ++LV+KPKG TS V R L+ K+VGHAGTLDPMATGLLI+ G AT+L++
Sbjct: 8 PSSGILLVDKPKGVTSHDVVSFARGLLHTKRVGHAGTLDPMATGLLILGFGNATRLLNYL 67
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEH----------IKDEDIRKAAASFRGE 416
G K Y V RLGE+T+T DAD V+ E+ I E A +F G
Sbjct: 68 LGHNKTYEAVIRLGESTNTDDADGDVVSSADDENGIINFANIDEILKELRAVIAKNFTGS 127
Query: 417 IWQVPPMFSAIKV 429
I Q P FSAIKV
Sbjct: 128 IMQTPTSFSAIKV 140
>gi|385838213|ref|YP_005875843.1| tRNA pseudouridine synthase B [Lactococcus lactis subsp. cremoris
A76]
gi|358749441|gb|AEU40420.1| tRNA pseudouridine synthase B [Lactococcus lactis subsp. cremoris
A76]
Length = 326
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 77/117 (65%), Gaps = 1/117 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V K GWTSF V KLR ++K KK+GH GTLDP TG+L + VGK+T+L++ + K Y
Sbjct: 7 VYKEAGWTSFDVVAKLRCILKTKKIGHGGTLDPSVTGVLPIAVGKSTRLLEYMEAAGKIY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWE-HIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
G +G +T T DAD ++ + P + ++ + +I A + F G+I Q+PPM+SA+K+
Sbjct: 67 EGQVTIGFSTETEDADGAIVNQTPVKNNLTESEIDSAMSRFVGKIKQIPPMYSAVKI 123
>gi|424781091|ref|ZP_18207957.1| tRNA pseudouridine synthase B [Catellicoccus marimammalium
M35/04/3]
gi|422842511|gb|EKU26963.1| tRNA pseudouridine synthase B [Catellicoccus marimammalium
M35/04/3]
Length = 304
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/116 (48%), Positives = 76/116 (65%), Gaps = 1/116 (0%)
Query: 316 KPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSG 375
K KG TS K+R++++ KKVGH GTLDP G+L +CVG+ATKLV++ + K Y G
Sbjct: 9 KEKGMTSHDCVFKMRKILQTKKVGHGGTLDPSVEGVLPICVGRATKLVEKLHELPKTYMG 68
Query: 376 VFRLGEATSTWDADSPVI-QREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVR 430
LG AT T DAD VI ++E + E+I A ASF G + Q+PPM+SA+KV+
Sbjct: 69 EITLGIATETEDADGEVIAKKEVTTPLSTEEIDAAMASFVGTMIQIPPMYSAVKVK 124
>gi|167746752|ref|ZP_02418879.1| hypothetical protein ANACAC_01464 [Anaerostipes caccae DSM 14662]
gi|167653712|gb|EDR97841.1| tRNA pseudouridine synthase B [Anaerostipes caccae DSM 14662]
Length = 296
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/116 (48%), Positives = 73/116 (62%), Gaps = 1/116 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+ K G+TS V KLR ++K KK+GH GTLDP ATG+L VC+GKATKL D K Y
Sbjct: 8 IYKEAGFTSHDVVAKLRGIIKQKKIGHTGTLDPQATGVLPVCLGKATKLCDMLTDTKKEY 67
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
VFRLG T T D + RE + ++++RK SF+G Q+PPM+SA+KV
Sbjct: 68 RAVFRLGLTTDTEDIWGETL-RESDISVSEDEVRKTICSFKGSYDQIPPMYSALKV 122
>gi|410664021|ref|YP_006916392.1| tRNA pseudouridine synthase B [Simiduia agarivorans SA1 = DSM
21679]
gi|409026378|gb|AFU98662.1| tRNA pseudouridine synthase B [Simiduia agarivorans SA1 = DSM
21679]
Length = 317
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 74/122 (60%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P ++++NKP G +S K +RL V K GH G+LDP+ATG+L +C G++TK
Sbjct: 9 PVSGVLVLNKPTGISSNLALQKAKRLFYVAKAGHTGSLDPLATGVLPLCFGESTKFSQFL 68
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
KGY RLGE T + D+D ++++ HI + + KA +FRG+I QVP MFSA
Sbjct: 69 LDADKGYDATIRLGERTDSSDSDGELVEKTDASHITEAQVAKALEAFRGQIQQVPSMFSA 128
Query: 427 IK 428
+K
Sbjct: 129 LK 130
>gi|429746374|ref|ZP_19279727.1| tRNA pseudouridine synthase B [Capnocytophaga sp. oral taxon 380
str. F0488]
gi|429166323|gb|EKY08313.1| tRNA pseudouridine synthase B [Capnocytophaga sp. oral taxon 380
str. F0488]
Length = 558
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 83/137 (60%), Gaps = 11/137 (8%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR-------RLVKVKKVGHAGTLDPMATGLLIVCVGKATK 361
G ++L++KP W+SF K++ +L K+K +GHAGTLDP+A+GLL++C GK TK
Sbjct: 10 GRILLIDKPLQWSSFQAVNKIKWAILKHYKLKKIK-IGHAGTLDPLASGLLVICTGKFTK 68
Query: 362 LVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVP 421
+ Q +K Y+G +G T ++D ++ + P +HI E + + F G++ Q P
Sbjct: 69 KITEIQDAVKTYTGTITVGATTPSYDKETEIDAHYPTDHITPELMEQVRMQFIGKLTQTP 128
Query: 422 PMFSAIK---VRVFHFS 435
P+FSAIK R++ F+
Sbjct: 129 PVFSAIKKEGKRLYEFA 145
>gi|442319345|ref|YP_007359366.1| tRNA pseudouridine synthase B [Myxococcus stipitatus DSM 14675]
gi|441486987|gb|AGC43682.1| tRNA pseudouridine synthase B [Myxococcus stipitatus DSM 14675]
Length = 290
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 74/119 (62%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++++KP G TSF V ++R L+K+KKVGH GTLDPMATG+L +C+G+ATK+
Sbjct: 4 VLVIDKPTGPTSFDVVRQVRSLLKLKKVGHTGTLDPMATGVLPLCLGEATKVAGFITEGD 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y RLG T T DA+ V P + + A A FRG QVPPM+SA+KV
Sbjct: 64 KAYDATVRLGSETDTQDAEGQVTATAPVPALTPALLEAALARFRGSFDQVPPMYSAVKV 122
>gi|294500894|ref|YP_003564594.1| tRNA pseudouridine synthase B [Bacillus megaterium QM B1551]
gi|294350831|gb|ADE71160.1| tRNA pseudouridine synthase B [Bacillus megaterium QM B1551]
Length = 305
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 78/123 (63%), Gaps = 2/123 (1%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQG 368
G +VL +KP G TS K+R+L++ KKVGH GTLDP TG+L +C+G+ATK+V+ G
Sbjct: 3 GVLVL-HKPAGLTSHDCVFKVRKLLRTKKVGHTGTLDPDVTGVLPICIGRATKIVEYLTG 61
Query: 369 MIKGYSGVFRLGEATSTWDADSPVIQREPWE-HIKDEDIRKAAASFRGEIWQVPPMFSAI 427
K Y G LG +T+T D+ V++ + E I + +S GE+ QVPPM+SA+
Sbjct: 62 ATKTYEGEVTLGFSTTTEDSSGEVVEEKKVEDSFSRAQIEEVLSSMTGELQQVPPMYSAV 121
Query: 428 KVR 430
KV+
Sbjct: 122 KVK 124
>gi|407647264|ref|YP_006811023.1| tRNA pseudouridine synthase B [Nocardia brasiliensis ATCC 700358]
gi|407310148|gb|AFU04049.1| tRNA pseudouridine synthase B [Nocardia brasiliensis ATCC 700358]
Length = 301
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/122 (47%), Positives = 76/122 (62%)
Query: 308 FGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQ 367
G +++V+K GWTS V K R+L+ KKVGHAGTLDPMATG+L++ V +ATKL+
Sbjct: 4 LGGLLIVDKDGGWTSHDVVAKCRKLLHTKKVGHAGTLDPMATGVLVLGVDRATKLLGLLT 63
Query: 368 GMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAI 427
K Y+ RLG+ATST DA+ V+ H+ D +I A G+I QVP SAI
Sbjct: 64 LTTKAYTATIRLGQATSTDDAEGEVLTTTSALHLADAEIDAHTAKLTGDIDQVPATVSAI 123
Query: 428 KV 429
KV
Sbjct: 124 KV 125
>gi|334365475|ref|ZP_08514428.1| tRNA pseudouridine synthase B [Alistipes sp. HGB5]
gi|313158239|gb|EFR57641.1| tRNA pseudouridine synthase B [Alistipes sp. HGB5]
Length = 238
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 79/126 (62%), Gaps = 5/126 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGK----LRRLVKVK-KVGHAGTLDPMATGLLIVCVGKATKLV 363
G + +++KP WTS V K LRRL K KVGHAGTLDP+ATG+L+VC+G+ATK+V
Sbjct: 15 GYIAVLDKPLRWTSTDVVRKIKFTLRRLGYRKIKVGHAGTLDPLATGILLVCIGRATKMV 74
Query: 364 DRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPM 423
D Q K Y LG T ++D + PV + P EHI E + +A +S GE Q PP+
Sbjct: 75 DALQAEEKEYVADVMLGATTPSYDLEHPVDRTFPTEHITREKVLEALSSLTGERLQEPPV 134
Query: 424 FSAIKV 429
+SA K+
Sbjct: 135 YSAKKI 140
>gi|154509092|ref|ZP_02044734.1| hypothetical protein ACTODO_01609 [Actinomyces odontolyticus ATCC
17982]
gi|153798726|gb|EDN81146.1| tRNA pseudouridine synthase B [Actinomyces odontolyticus ATCC
17982]
Length = 355
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 76/125 (60%)
Query: 305 DGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVD 364
D P +++++KP+G TS V ++RRL + +KVGH GTLDPMATG+L++ +GKATKL+
Sbjct: 11 DNPRPGLLVIDKPQGLTSHDVVSRVRRLARTRKVGHGGTLDPMATGVLVIGIGKATKLLT 70
Query: 365 RYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMF 424
G K Y R G AT+T DA+ + +E + A A RG+I QVP
Sbjct: 71 WVSGHSKEYRATIRFGVATNTDDAEGVATAAVGCASLSEEQLEAALAPQRGDIMQVPSTV 130
Query: 425 SAIKV 429
SAIKV
Sbjct: 131 SAIKV 135
>gi|260909534|ref|ZP_05916237.1| tRNA pseudouridine synthase B [Prevotella sp. oral taxon 472 str.
F0295]
gi|260636382|gb|EEX54369.1| tRNA pseudouridine synthase B [Prevotella sp. oral taxon 472 str.
F0295]
Length = 240
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 73/127 (57%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRL------VKVKKVGHAGTLDPMATGLLIVCVGKATKL 362
G ++ ++KP TSF ++R L VK K+GHAGTLDP+ATG+L++C GKATK
Sbjct: 6 GEIICIDKPYEITSFGALARVRHLLSRRLGVKRVKIGHAGTLDPLATGVLVLCTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+ Q K Y +LG T ++D + PV + HI E I F GEI QVPP
Sbjct: 66 IAELQAHTKEYVATLQLGATTPSYDMEHPVNETFETAHITREAIDNVLQQFVGEIQQVPP 125
Query: 423 MFSAIKV 429
+SA+KV
Sbjct: 126 TYSAVKV 132
>gi|312111632|ref|YP_003989948.1| tRNA pseudouridine synthase B [Geobacillus sp. Y4.1MC1]
gi|336236007|ref|YP_004588623.1| tRNA pseudouridine synthase B [Geobacillus thermoglucosidasius
C56-YS93]
gi|423720551|ref|ZP_17694733.1| tRNA pseudouridine synthase B [Geobacillus thermoglucosidans
TNO-09.020]
gi|311216733|gb|ADP75337.1| tRNA pseudouridine synthase B [Geobacillus sp. Y4.1MC1]
gi|335362862|gb|AEH48542.1| tRNA pseudouridine synthase B [Geobacillus thermoglucosidasius
C56-YS93]
gi|383365904|gb|EID43195.1| tRNA pseudouridine synthase B [Geobacillus thermoglucosidans
TNO-09.020]
Length = 302
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 76/120 (63%), Gaps = 1/120 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP G TS ++RR+++ KKVGH GTLDP +G+L +C+GKAT++ + G
Sbjct: 4 VLLLHKPPGMTSHDCVARIRRMLRTKKVGHTGTLDPNVSGVLPICIGKATRIAEFLTGST 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG AT+T D+D ++ ++ + I DI + GEI Q PPM+SA+KV
Sbjct: 64 KTYEGEVTLGIATTTEDSDGEIVAKQKVDRIIHRSDIEEVFRQLTGEIAQTPPMYSAVKV 123
>gi|281422486|ref|ZP_06253485.1| tRNA pseudouridine synthase B [Prevotella copri DSM 18205]
gi|281403469|gb|EFB34149.1| tRNA pseudouridine synthase B [Prevotella copri DSM 18205]
Length = 238
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 76/126 (60%), Gaps = 5/126 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK-----KVGHAGTLDPMATGLLIVCVGKATKLV 363
G ++ ++KP +SF +R L+ K K+GHAGTLDP+ATG+L++C GK TK +
Sbjct: 6 GEIIAIDKPYRMSSFGALAHVRYLLSKKLGFKVKIGHAGTLDPLATGVLVLCTGKCTKQI 65
Query: 364 DRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPM 423
++ Q K Y+ +LG T+++D + V P EHI + + + F GEI QVPP
Sbjct: 66 EQLQTHTKEYTATLQLGATTASYDKEHSVNHTYPTEHITRQLVEETLKQFVGEIQQVPPT 125
Query: 424 FSAIKV 429
+SA+KV
Sbjct: 126 YSAVKV 131
>gi|399022547|ref|ZP_10724621.1| tRNA pseudouridine 55 synthase [Chryseobacterium sp. CF314]
gi|398084607|gb|EJL75285.1| tRNA pseudouridine 55 synthase [Chryseobacterium sp. CF314]
Length = 232
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/128 (45%), Positives = 74/128 (57%), Gaps = 7/128 (5%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR-------RLVKVKKVGHAGTLDPMATGLLIVCVGKATK 361
G + L++KP WTSF K++ L K K+GHAGTLDP ATGLLIVC GK TK
Sbjct: 9 GHIFLLDKPLDWTSFQAVNKMKYKLKREFNLPKKFKIGHAGTLDPRATGLLIVCCGKFTK 68
Query: 362 LVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVP 421
+ Q K Y ++G T ++D + P I + HI +E IR+A F GEI Q P
Sbjct: 69 KIPEIQDAPKEYWTEIKIGVQTESYDTEKPEILNQDISHISEEQIREALGKFVGEIEQKP 128
Query: 422 PMFSAIKV 429
P FSAIK+
Sbjct: 129 PAFSAIKI 136
>gi|402846097|ref|ZP_10894415.1| tRNA pseudouridine(55) synthase [Porphyromonas sp. oral taxon 279
str. F0450]
gi|402268428|gb|EJU17799.1| tRNA pseudouridine(55) synthase [Porphyromonas sp. oral taxon 279
str. F0450]
Length = 243
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 77/127 (60%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G + ++KP W+SF++ K R R + +KK VGHAGTLDP+ATG++I+C GK TK
Sbjct: 9 GATIALDKPLTWSSFSLVNKFRCEACRYLGIKKLKVGHAGTLDPLATGVMILCTGKHTKR 68
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+D Q K Y RLG+ T T+D ++ P EHI E + +A F G I QVPP
Sbjct: 69 IDELQAGRKEYIADIRLGQTTPTFDMETEPDAFFPTEHITREAVEEALKGFIGTIEQVPP 128
Query: 423 MFSAIKV 429
FSA+KV
Sbjct: 129 AFSAVKV 135
>gi|332670049|ref|YP_004453057.1| tRNA pseudouridine synthase B [Cellulomonas fimi ATCC 484]
gi|332339087|gb|AEE45670.1| tRNA pseudouridine synthase B [Cellulomonas fimi ATCC 484]
Length = 315
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 79/129 (61%), Gaps = 4/129 (3%)
Query: 301 PPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKAT 360
P DG +++V+KP+GWTS V + RRL +KVGHAGTLDPMATG+L++ +G+AT
Sbjct: 12 PTAADG----LLVVDKPQGWTSHDVVARTRRLAATRKVGHAGTLDPMATGVLVLGIGRAT 67
Query: 361 KLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQV 420
+L+ G K Y+ RLG AT+T DA+ V+ + D + A A+ G I QV
Sbjct: 68 RLLTYVVGADKEYTATVRLGVATTTDDAEGEVVAVRDASGVSDAGLAAAVAALTGPILQV 127
Query: 421 PPMFSAIKV 429
P SAIKV
Sbjct: 128 PSSVSAIKV 136
>gi|403386821|ref|ZP_10928878.1| tRNA pseudouridine synthase B [Clostridium sp. JC122]
Length = 295
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/116 (45%), Positives = 74/116 (63%), Gaps = 1/116 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+ KPK TSF V LR+++ KKVGH GTLDP A G+L VC G++TK++D K Y
Sbjct: 13 IYKPKNMTSFDVVRDLRKILGEKKVGHCGTLDPQACGVLPVCFGRSTKIIDYIMEGTKEY 72
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
+LGE T T+D + VI+ + +DE ++ SF+G+I QVPPM+SA+KV
Sbjct: 73 VATLKLGEVTDTYDVEGKVIKTFEVKVTEDE-VKAVINSFKGDIKQVPPMYSALKV 127
>gi|148273328|ref|YP_001222889.1| tRNA pseudouridine synthase B [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|147831258|emb|CAN02214.1| tRNA pseudouridine synthase B [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
Length = 319
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/132 (43%), Positives = 78/132 (59%), Gaps = 7/132 (5%)
Query: 301 PPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKAT 360
P T G ++L++K WTS + + RRL +KVGHAGTLDPMATGL+I+ V +T
Sbjct: 10 PSTASG----LLLIDKRGEWTSHDLVARTRRLAGTRKVGHAGTLDPMATGLMILGVNSST 65
Query: 361 KLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKD---EDIRKAAASFRGEI 417
+L+ G+ K Y RLG AT+T D + V+ R I+D D+ +A A+ RG I
Sbjct: 66 RLLTYLVGLDKEYLATIRLGRATTTDDREGEVVSRAEPGRIRDLAVADVERAVAALRGTI 125
Query: 418 WQVPPMFSAIKV 429
QVP SAIKV
Sbjct: 126 SQVPSAVSAIKV 137
>gi|338998851|ref|ZP_08637512.1| tRNA pseudouridine synthase B [Halomonas sp. TD01]
gi|338764233|gb|EGP19204.1| tRNA pseudouridine synthase B [Halomonas sp. TD01]
Length = 306
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/122 (45%), Positives = 73/122 (59%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P ++L++KPKG +S ++RRL + +K GH GTLDPMATGLL +C+G+ATK
Sbjct: 9 PVNGVLLLDKPKGISSNHALQRVRRLFEAQKAGHTGTLDPMATGLLPICLGEATKFSAHL 68
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
K Y LG T T DA+ VI+R + ED+ A F GEI QVPPM+SA
Sbjct: 69 LEADKMYRTRVELGVITDTGDAEGTVIERREIPSLTAEDVESVLARFHGEIDQVPPMYSA 128
Query: 427 IK 428
+K
Sbjct: 129 LK 130
>gi|227529111|ref|ZP_03959160.1| pseudouridylate synthase [Lactobacillus vaginalis ATCC 49540]
gi|227350955|gb|EEJ41246.1| pseudouridylate synthase [Lactobacillus vaginalis ATCC 49540]
Length = 299
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 83/129 (64%), Gaps = 4/129 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K +G TSF +LRR++K KK+GH+GTLDP G+L +C+G ATK+V+
Sbjct: 4 IIPLYKERGMTSFDCVSRLRRILKTKKIGHSGTLDPSVDGVLPICIGNATKVVEYLMQSG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G +G+AT+T D D +++ +P E I E I++A GEI Q+PPM+SA+KV
Sbjct: 64 KEYQGELVIGKATTTEDFDGEIVETKPVETPISSELIKEAMQKMTGEIIQIPPMYSAVKV 123
Query: 430 ---RVFHFS 435
R++ ++
Sbjct: 124 NGKRLYEYA 132
>gi|418017802|ref|ZP_12657358.1| tRNA pseudouridine synthase B [Streptococcus salivarius M18]
gi|345526651|gb|EGX29962.1| tRNA pseudouridine synthase B [Streptococcus salivarius M18]
Length = 293
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 76/119 (63%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR++++ KK+GH GTLDP TG+L + VGKAT++++
Sbjct: 5 IINLKKEAGMTSHDAVFKLRKILQEKKIGHGGTLDPDVTGVLPIAVGKATRVIEYMTEAG 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G +G +T+T DA ++Q P + +E + KA ASF GEI Q+PPM+SA+KV
Sbjct: 65 KVYEGEITIGFSTTTEDAGGEIVQTTPVTELDEETVDKAMASFEGEITQIPPMYSAVKV 123
>gi|253755434|ref|YP_003028574.1| tRNA pseudouridine synthase B [Streptococcus suis BM407]
gi|389856493|ref|YP_006358736.1| tRNA pseudouridine synthase B [Streptococcus suis ST1]
gi|403061611|ref|YP_006649827.1| tRNA pseudouridine synthase B [Streptococcus suis S735]
gi|251817898|emb|CAZ55663.1| tRNA pseudouridine synthase B [Streptococcus suis BM407]
gi|353740211|gb|AER21218.1| tRNA pseudouridine synthase B [Streptococcus suis ST1]
gi|402808937|gb|AFR00429.1| tRNA pseudouridine synthase B [Streptococcus suis S735]
Length = 292
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 79/120 (65%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ V K G TS V KLR++++ KK+GH GTLDP TG+L + VGKAT++++ Q
Sbjct: 5 IINVKKEAGMTSHDVVFKLRKILQEKKIGHGGTLDPDVTGVLPIAVGKATRMIEYMQEEG 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVR 430
K Y G +G +T+T DA +++R P +I ++ + +A SF G I Q+PPM+SA+KV+
Sbjct: 65 KIYEGEITIGYSTTTEDASGDLVERTPVLYIAEQAVDEAMTSFVGTITQIPPMYSAVKVK 124
>gi|340755865|ref|ZP_08692517.1| tRNA pseudouridine synthase B [Fusobacterium sp. D12]
gi|421500587|ref|ZP_15947580.1| tRNA pseudouridine(55) synthase [Fusobacterium necrophorum subsp.
funduliforme Fnf 1007]
gi|313686543|gb|EFS23378.1| tRNA pseudouridine synthase B [Fusobacterium sp. D12]
gi|402267753|gb|EJU17147.1| tRNA pseudouridine(55) synthase [Fusobacterium necrophorum subsp.
funduliforme Fnf 1007]
Length = 285
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 76/120 (63%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V K KG +SF V LR++++ +K+GH GTLDP+ATG+LI+CVGKAT+L +
Sbjct: 4 IIVVKKEKGISSFDVIRSLRKILQERKIGHTGTLDPLATGVLILCVGKATRLAQEIEAQE 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVR 430
K Y G T T+D + V+ + + E+ K ++G+I QVPPM+SAIK++
Sbjct: 64 KIYEAEMEFGYQTDTYDLEGRVVAESLKKKVSREEFEKILEKWKGDILQVPPMYSAIKLQ 123
>gi|433608716|ref|YP_007041085.1| tRNA pseudouridine synthase B [Saccharothrix espanaensis DSM 44229]
gi|407886569|emb|CCH34212.1| tRNA pseudouridine synthase B [Saccharothrix espanaensis DSM 44229]
Length = 298
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 73/119 (61%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V K+RR++ +KVGHAGTLDPMATG+L++ V +ATKL+
Sbjct: 12 LVVVDKPDGMTSHDVVAKVRRILGTRKVGHAGTLDPMATGVLVLGVERATKLLGHLALDS 71
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y RLG AT+T DA+ V+ + ++ IR A G I QVP SA+K+
Sbjct: 72 KAYLSTIRLGSATTTDDAEGEVLSTSDASAVAEDAIRAGVAKLTGPIQQVPSAVSAVKI 130
>gi|336398317|ref|ZP_08579117.1| tRNA pseudouridine synthase B [Prevotella multisaccharivorax DSM
17128]
gi|336068053|gb|EGN56687.1| tRNA pseudouridine synthase B [Prevotella multisaccharivorax DSM
17128]
Length = 229
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 77/126 (61%), Gaps = 5/126 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK-----KVGHAGTLDPMATGLLIVCVGKATKLV 363
G ++ ++KP +SF R L+ KVGHAGTLDP+ATG+L++C G TK +
Sbjct: 6 GEIIAIDKPYRMSSFGALAHCRYLLSQAVGQKVKVGHAGTLDPLATGVLVLCTGHCTKQI 65
Query: 364 DRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPM 423
++ Q +K Y+ + +LG T+++D + + Q PW+HI E I + F G+I Q+PP
Sbjct: 66 EQLQSHMKEYTAILQLGATTASYDLEHEINQTYPWKHITREMILEILKKFTGDIEQIPPT 125
Query: 424 FSAIKV 429
+SA+K+
Sbjct: 126 YSAVKI 131
>gi|288929543|ref|ZP_06423387.1| tRNA pseudouridine synthase B [Prevotella sp. oral taxon 317 str.
F0108]
gi|288329048|gb|EFC67635.1| tRNA pseudouridine synthase B [Prevotella sp. oral taxon 317 str.
F0108]
Length = 236
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 55/127 (43%), Positives = 74/127 (58%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRL------VKVKKVGHAGTLDPMATGLLIVCVGKATKL 362
G ++ ++KP TSF ++R L VK K+GHAGTLDP+ATG+L++C GKATK
Sbjct: 6 GEIICIDKPYEITSFGALARVRYLLSRRLGVKRVKIGHAGTLDPLATGVLVLCTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+ Q K Y +LG T ++D + PV + HI E I A F GEI QVPP
Sbjct: 66 IAELQAHTKEYVATLQLGATTPSYDMEHPVNETFETGHITREAIDNALQQFVGEIQQVPP 125
Query: 423 MFSAIKV 429
+SA+KV
Sbjct: 126 TYSAVKV 132
>gi|417556481|ref|ZP_12207540.1| tRNA pseudouridine synthase B [Gardnerella vaginalis 315-A]
gi|333602976|gb|EGL14401.1| tRNA pseudouridine synthase B [Gardnerella vaginalis 315-A]
Length = 400
Score = 105 bits (263), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/129 (46%), Positives = 78/129 (60%), Gaps = 10/129 (7%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++LV+KPKG TS V R L+ K+VGHAGTLDPMATGLLI+ G AT+L++ G
Sbjct: 11 ILLVDKPKGVTSHDVVSCARGLLHTKRVGHAGTLDPMATGLLILGFGNATRLLNYLLGHD 70
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHI------KDEDIRK----AAASFRGEIWQV 420
K Y V RLGE+T+T DAD V+ E+ DE +++ A +F G I Q
Sbjct: 71 KTYEAVIRLGESTNTDDADGDVVSSVDDENSILNSANTDEILKELRCVIAKNFTGHIMQT 130
Query: 421 PPMFSAIKV 429
P FSAIK+
Sbjct: 131 PTAFSAIKI 139
>gi|255524225|ref|ZP_05391184.1| tRNA pseudouridine synthase B [Clostridium carboxidivorans P7]
gi|296185346|ref|ZP_06853756.1| tRNA pseudouridine synthase B [Clostridium carboxidivorans P7]
gi|255512050|gb|EET88331.1| tRNA pseudouridine synthase B [Clostridium carboxidivorans P7]
gi|296050180|gb|EFG89604.1| tRNA pseudouridine synthase B [Clostridium carboxidivorans P7]
Length = 291
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/116 (45%), Positives = 74/116 (63%), Gaps = 1/116 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+NKP G +SF V K++ + K KKVGH GTLDP A+G+L +C+G ATKLVD K Y
Sbjct: 7 INKPLGMSSFDVVRKVKSIAKTKKVGHTGTLDPEASGVLPICIGNATKLVDYIMSDYKIY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
LG T T+D + VI+ P + ++ E+++K F G I Q+PPM+SA+KV
Sbjct: 67 KVELMLGITTDTYDREGKVIKNSPVD-LEVEEVKKVIKEFEGNIDQIPPMYSALKV 121
>gi|390946908|ref|YP_006410668.1| tRNA pseudouridine 55 synthase [Alistipes finegoldii DSM 17242]
gi|390423477|gb|AFL77983.1| tRNA pseudouridine 55 synthase [Alistipes finegoldii DSM 17242]
Length = 238
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 78/126 (61%), Gaps = 5/126 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGK----LRRLVKVK-KVGHAGTLDPMATGLLIVCVGKATKLV 363
G + +++KP WTS V K LRRL K KVGHAGTLDP+ATG+L+VC+G+ATK+V
Sbjct: 15 GYIAVLDKPLRWTSTDVVRKIKFTLRRLGYRKIKVGHAGTLDPLATGILLVCIGRATKMV 74
Query: 364 DRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPM 423
D Q K Y LG T ++D + PV + P EHI E + A +S GE Q PP+
Sbjct: 75 DALQAEEKEYVADVMLGATTPSYDLEHPVDRTFPTEHITREKVLAALSSLTGERLQEPPV 134
Query: 424 FSAIKV 429
+SA K+
Sbjct: 135 YSAKKI 140
>gi|92115187|ref|YP_575115.1| tRNA pseudouridine synthase B [Chromohalobacter salexigens DSM
3043]
gi|122419136|sp|Q1QSZ2.1|TRUB_CHRSD RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|91798277|gb|ABE60416.1| tRNA pseudouridine synthase B [Chromohalobacter salexigens DSM
3043]
Length = 307
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/122 (45%), Positives = 72/122 (59%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P ++L++K G +S ++RRL +K GH GTLDPMATGLL VC G+ATK
Sbjct: 9 PIDGVLLLDKAPGVSSNRALQQVRRLYDAQKAGHTGTLDPMATGLLPVCFGEATKFSAYL 68
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
K Y RLGE T T DA+ VI+ + + DI A A FRGE+ QVPPM+SA
Sbjct: 69 LDADKTYRTWVRLGEVTDTGDAEGTVIEHHSVPALDERDIEAALAGFRGEVEQVPPMYSA 128
Query: 427 IK 428
+K
Sbjct: 129 LK 130
>gi|225016944|ref|ZP_03706136.1| hypothetical protein CLOSTMETH_00859 [Clostridium methylpentosum
DSM 5476]
gi|224950338|gb|EEG31547.1| hypothetical protein CLOSTMETH_00859 [Clostridium methylpentosum
DSM 5476]
Length = 295
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 77/119 (64%), Gaps = 1/119 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ +NKP+G+TSF V KLR + + K++GHAGTLDPMATG+L V +G+ATK +
Sbjct: 4 ILCMNKPEGFTSFDVVAKLRGITRTKRIGHAGTLDPMATGVLPVFLGRATKAISLLPDHT 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ F+LG + T D+ ++ R + +++ A +RG I Q+PPM+SA+KV
Sbjct: 64 KRYTAGFQLGLTSDTLDSTGTILSRS-HSTLTQQELLAALEQYRGTISQIPPMYSALKV 121
>gi|296327538|ref|ZP_06870084.1| pseudouridylate synthase [Fusobacterium nucleatum subsp. nucleatum
ATCC 23726]
gi|296155364|gb|EFG96135.1| pseudouridylate synthase [Fusobacterium nucleatum subsp. nucleatum
ATCC 23726]
Length = 290
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/128 (45%), Positives = 85/128 (66%), Gaps = 4/128 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++VNKPKG TSF V KL++++K KK+GH GTLDP+ATG+++VCVGKATKL +
Sbjct: 7 IIVVNKPKGITSFDVIRKLKKILKTKKIGHTGTLDPLATGVMLVCVGKATKLASDLEAKD 66
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV- 429
K Y F +G AT T+D + I E I E++ ++ F G I Q+PPM+SAIK+
Sbjct: 67 KVYIADFDIGYATDTYDIEGKKIAENTIE-ISKENLEQSIKKFIGNIKQIPPMYSAIKID 125
Query: 430 --RVFHFS 435
+++H +
Sbjct: 126 GNKLYHLA 133
>gi|423133216|ref|ZP_17120863.1| tRNA pseudouridine synthase B [Myroides odoratimimus CIP 101113]
gi|371649272|gb|EHO14753.1| tRNA pseudouridine synthase B [Myroides odoratimimus CIP 101113]
Length = 238
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 81/126 (64%), Gaps = 6/126 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK------KVGHAGTLDPMATGLLIVCVGKATKL 362
G ++L++KP W+SF K++ L+K KVGHAGTLDP+A+GLLI+C GKATK
Sbjct: 12 GQILLIDKPLHWSSFQAVNKIKWLLKKHFDLKKIKVGHAGTLDPLASGLLIICTGKATKQ 71
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+ QG IK Y+G LG T ++D ++ + Q P EHI ++ + +A SF G Q PP
Sbjct: 72 ISELQGQIKEYTGTITLGGTTPSYDLETEIDQTFPTEHITEDLLEEARLSFMGTTEQRPP 131
Query: 423 MFSAIK 428
+FSA+K
Sbjct: 132 IFSALK 137
>gi|384045255|ref|YP_005493272.1| TRNA pseudouridine synthase B [Bacillus megaterium WSH-002]
gi|345442946|gb|AEN87963.1| TRNA pseudouridine synthase B [Bacillus megaterium WSH-002]
Length = 305
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 79/123 (64%), Gaps = 2/123 (1%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQG 368
G +VL +KP G TS K+R+L++ KKVGH GTLDP TG+L +C+G+ATK+V+ G
Sbjct: 3 GVLVL-HKPAGLTSHDCVFKVRKLLRTKKVGHTGTLDPDVTGVLPICIGRATKIVEYLTG 61
Query: 369 MIKGYSGVFRLGEATSTWDADSPVI-QREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAI 427
K Y G LG +T+T D+ V+ +++ + I + +S GE+ QVPPM+SA+
Sbjct: 62 ATKTYEGEVTLGFSTTTEDSSGEVVEEKKVADSFSRAQIEEVLSSMTGELQQVPPMYSAV 121
Query: 428 KVR 430
KV+
Sbjct: 122 KVK 124
>gi|387761281|ref|YP_006068258.1| tRNA pseudouridine synthase B [Streptococcus salivarius 57.I]
gi|339292048|gb|AEJ53395.1| tRNA pseudouridine synthase B [Streptococcus salivarius 57.I]
Length = 293
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 76/119 (63%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR++++ KK+GH GTLDP TG+L + VGKAT++++
Sbjct: 5 IINLKKEAGMTSHDAVFKLRKILQEKKIGHGGTLDPDVTGVLPIAVGKATRVIEYMTEAG 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G +G +T+T DA ++Q P + +E + KA ASF GEI Q+PPM+SA+KV
Sbjct: 65 KVYEGEITIGFSTTTEDASGEIVQITPVTELDEEAVDKAMASFEGEITQIPPMYSAVKV 123
>gi|333368626|ref|ZP_08460799.1| tRNA pseudouridine synthase B [Psychrobacter sp. 1501(2011)]
gi|332976697|gb|EGK13535.1| tRNA pseudouridine synthase B [Psychrobacter sp. 1501(2011)]
Length = 344
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 76/123 (61%), Gaps = 5/123 (4%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKV-----KKVGHAGTLDPMATGLLIVCVGKATKLVDR 365
++L++KPKG TS V K++ L+K KK GH GTLDPMATGLL VC+G+ATK
Sbjct: 27 VILIDKPKGLTSQQVVSKVKYLLKSPVHDSKKAGHTGTLDPMATGLLPVCLGEATKFSHY 86
Query: 366 YQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFS 425
K Y + +LG T T DA+ ++ +P ++ ++ + A F G+I QVPPM+S
Sbjct: 87 QLDADKSYQAMIKLGIQTDTGDAEGKIVAEKPVPNLSLSELEQVTAKFLGDILQVPPMYS 146
Query: 426 AIK 428
A+K
Sbjct: 147 ALK 149
>gi|312139336|ref|YP_004006672.1| pseudouridylate synthase [Rhodococcus equi 103S]
gi|311888675|emb|CBH47987.1| putative pseudouridylate synthase [Rhodococcus equi 103S]
Length = 308
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 73/119 (61%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+K G TS V + R+L+ +KVGHAGTLDPMATG+LI+ V +ATKL+
Sbjct: 16 LLIVDKEAGMTSHDVVSRCRKLLNTRKVGHAGTLDPMATGVLILGVERATKLLGLLALTT 75
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K YS RLG+AT+T DA+ V+ + DE I A G+I QVP SAIKV
Sbjct: 76 KSYSATIRLGQATTTDDAEGEVLTTVDASAVTDEQIAAEIAKLTGDIQQVPASVSAIKV 134
>gi|389794726|ref|ZP_10197872.1| tRNA pseudouridine synthase B [Rhodanobacter fulvus Jip2]
gi|388431940|gb|EIL88980.1| tRNA pseudouridine synthase B [Rhodanobacter fulvus Jip2]
Length = 317
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 55/118 (46%), Positives = 69/118 (58%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KP G +S RRL + K GHAG LDP+ATGLL +C G+ATKL G
Sbjct: 4 IVLLDKPMGVSSNQALQSARRLFRAAKGGHAGALDPLATGLLPLCFGEATKLAGTLLGSR 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y RLG T T D + V+Q+ P + D I A A RG I QVPPM+SA+K
Sbjct: 64 KAYIAECRLGVTTDTADREGEVLQQHPVPPLDDAMIEAALAKLRGRILQVPPMYSALK 121
>gi|34762649|ref|ZP_00143641.1| tRNA pseudouridine synthase B [Fusobacterium nucleatum subsp.
vincentii ATCC 49256]
gi|421144776|ref|ZP_15604682.1| tRNA pseudouridine synthase B [Fusobacterium nucleatum subsp.
fusiforme ATCC 51190]
gi|27887670|gb|EAA24747.1| tRNA pseudouridine synthase B [Fusobacterium nucleatum subsp.
vincentii ATCC 49256]
gi|395488824|gb|EJG09673.1| tRNA pseudouridine synthase B [Fusobacterium nucleatum subsp.
fusiforme ATCC 51190]
Length = 287
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/128 (45%), Positives = 85/128 (66%), Gaps = 4/128 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++VNKPKG TSF V KL++++K KK+GH GTLDP+ATG+++VCVGKATKL +
Sbjct: 4 IIVVNKPKGITSFDVIRKLKKILKTKKIGHTGTLDPLATGVMLVCVGKATKLASDLEAKN 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV- 429
K Y F +G AT T+D + I E + E++ ++ F G I QVPPM+SAIK+
Sbjct: 64 KIYIADFDIGYATDTYDVEGKKIAENIIE-VSKENLEQSIKKFIGNIKQVPPMYSAIKID 122
Query: 430 --RVFHFS 435
+++H +
Sbjct: 123 GNKLYHLA 130
>gi|283780580|ref|YP_003371335.1| tRNA pseudouridine synthase B [Pirellula staleyi DSM 6068]
gi|283439033|gb|ADB17475.1| tRNA pseudouridine synthase B [Pirellula staleyi DSM 6068]
Length = 301
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 76/119 (63%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++VNKP G TS V +++R VK KVGHAGTLDP+ATG+L++ +G T+LV+ Q M
Sbjct: 4 ILIVNKPAGPTSRDVVNRVQRCVKPAKVGHAGTLDPLATGVLVIGIGAGTRLVEYVQQMP 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G FRLG ++ T D I + + +D+R+ F G+I Q PP +SA+KV
Sbjct: 64 KTYVGQFRLGISSDTEDITGCCITHDESPVVSRDDLRRVLPRFLGKISQKPPAYSALKV 122
>gi|187935059|ref|YP_001885474.1| tRNA pseudouridine synthase B [Clostridium botulinum B str. Eklund
17B]
gi|187723212|gb|ACD24433.1| tRNA pseudouridine synthase B [Clostridium botulinum B str. Eklund
17B]
Length = 291
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 77/125 (61%), Gaps = 3/125 (2%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V K KG +SF V K++ K KKVGH GTLDP A G+L VC+GKATK++D K Y
Sbjct: 7 VFKNKGMSSFDVVRKIKFTAKEKKVGHTGTLDPEAEGVLPVCLGKATKIIDYIMNSRKVY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK---VR 430
LG+ T+T+D + V++ HIK+ D+++ SF GE QVPPM+ A+K VR
Sbjct: 67 KVKLLLGKNTTTYDLEGEVVKERDASHIKENDVKEMILSFLGEYDQVPPMYCALKQNGVR 126
Query: 431 VFHFS 435
++ +
Sbjct: 127 LYQLA 131
>gi|415725155|ref|ZP_11470158.1| tRNA pseudouridine synthase B [Gardnerella vaginalis 00703C2mash]
gi|388061960|gb|EIK84596.1| tRNA pseudouridine synthase B [Gardnerella vaginalis 00703C2mash]
Length = 418
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 61/136 (44%), Positives = 78/136 (57%), Gaps = 13/136 (9%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P ++LV+KPKG TS V R L+ K+VGHAGTLDPMATGLLI+ G AT+L++
Sbjct: 13 PSSGILLVDKPKGVTSHDVVSFARGLLHTKRVGHAGTLDPMATGLLILGFGNATRLLNYL 72
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHI---------KDEDIRKAAA----SF 413
G K Y V RLGE+T+T DAD +I E+ DE +++ +F
Sbjct: 73 LGHNKTYEAVIRLGESTNTDDADGNIIASAKSENTILSSSNNANIDEILKELRVVIEKNF 132
Query: 414 RGEIWQVPPMFSAIKV 429
G I Q P FSAIKV
Sbjct: 133 TGSIMQTPTSFSAIKV 148
>gi|423458007|ref|ZP_17434804.1| tRNA pseudouridine synthase B [Bacillus cereus BAG5X2-1]
gi|401148391|gb|EJQ55884.1| tRNA pseudouridine synthase B [Bacillus cereus BAG5X2-1]
Length = 307
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/120 (44%), Positives = 78/120 (65%), Gaps = 1/120 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++R+ + I +++ A A+ G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVERKNVDRVITRKEVEGALAALTGTIEQMPPMFSAVKV 123
>gi|237744680|ref|ZP_04575161.1| tRNA pseudouridine synthase B [Fusobacterium sp. 7_1]
gi|229431909|gb|EEO42121.1| tRNA pseudouridine synthase B [Fusobacterium sp. 7_1]
Length = 287
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/128 (45%), Positives = 85/128 (66%), Gaps = 4/128 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++VNKPKG TSF V KL++++K KK+GH GTLDP+ATG+++VCVGKATKL +
Sbjct: 4 IIVVNKPKGITSFDVIRKLKKILKTKKIGHTGTLDPLATGVMLVCVGKATKLASDLEAKD 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV- 429
K Y F +G AT T+D + I E I E++ ++ F G I Q+PPM+SAIK+
Sbjct: 64 KIYIADFDIGYATDTYDIEGKKIAENTIE-ISKENLEQSIKKFIGNIKQIPPMYSAIKID 122
Query: 430 --RVFHFS 435
+++H +
Sbjct: 123 GNKLYHLA 130
>gi|311114229|ref|YP_003985450.1| tRNA pseudouridine synthase B [Gardnerella vaginalis ATCC 14019]
gi|310945723|gb|ADP38427.1| tRNA pseudouridine synthase B [Gardnerella vaginalis ATCC 14019]
Length = 400
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/129 (46%), Positives = 78/129 (60%), Gaps = 10/129 (7%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++LV+KPKG TS V R L+ K+VGHAGTLDPMATGLLI+ G AT+L++ G
Sbjct: 11 ILLVDKPKGVTSHDVVSCARGLLHTKRVGHAGTLDPMATGLLILGFGNATRLLNYLLGHD 70
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHI------KDEDIRK----AAASFRGEIWQV 420
K Y V RLGE+T+T DAD V+ E+ DE +++ A +F G I Q
Sbjct: 71 KTYEAVIRLGESTNTDDADGDVVSSVDDENSILNSANTDEILKELRCVIAKNFTGHIMQT 130
Query: 421 PPMFSAIKV 429
P FSAIK+
Sbjct: 131 PTAFSAIKI 139
>gi|373108777|ref|ZP_09523058.1| tRNA pseudouridine synthase B [Myroides odoratimimus CCUG 10230]
gi|423129553|ref|ZP_17117228.1| tRNA pseudouridine synthase B [Myroides odoratimimus CCUG 12901]
gi|371646022|gb|EHO11539.1| tRNA pseudouridine synthase B [Myroides odoratimimus CCUG 10230]
gi|371648603|gb|EHO14091.1| tRNA pseudouridine synthase B [Myroides odoratimimus CCUG 12901]
Length = 238
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 81/126 (64%), Gaps = 6/126 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK------KVGHAGTLDPMATGLLIVCVGKATKL 362
G ++L++KP W+SF K++ L+K KVGHAGTLDP+A+GLLI+C GKATK
Sbjct: 12 GQILLIDKPLHWSSFQAVNKIKWLLKKHFDLKKIKVGHAGTLDPLASGLLIICTGKATKQ 71
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+ QG IK Y+G LG T ++D ++ + Q P EHI ++ + +A SF G Q PP
Sbjct: 72 ISELQGQIKEYTGTITLGGTTPSYDLETEIDQTFPTEHITEDLLEEARLSFMGTTEQRPP 131
Query: 423 MFSAIK 428
+FSA+K
Sbjct: 132 IFSALK 137
>gi|336400791|ref|ZP_08581564.1| tRNA pseudouridine synthase B [Fusobacterium sp. 21_1A]
gi|336161816|gb|EGN64807.1| tRNA pseudouridine synthase B [Fusobacterium sp. 21_1A]
Length = 287
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 84/128 (65%), Gaps = 4/128 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++VNKPKG TSF V KL++ +K KK+GH GTLDP+ATG+++VCVG+ATKL +
Sbjct: 4 IIVVNKPKGITSFDVIRKLKKNLKTKKIGHTGTLDPLATGIMLVCVGRATKLASDLEAKD 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV- 429
K Y F +G AT T+D + I E + E++ ++ F G I Q+PPM+SAIK+
Sbjct: 64 KIYIADFDIGYATDTYDIEGKKIAENIIE-VSKENLEQSIKKFIGNIKQIPPMYSAIKID 122
Query: 430 --RVFHFS 435
+++H +
Sbjct: 123 GNKLYHLA 130
>gi|336418118|ref|ZP_08598397.1| tRNA pseudouridine synthase B [Fusobacterium sp. 11_3_2]
gi|336160577|gb|EGN63622.1| tRNA pseudouridine synthase B [Fusobacterium sp. 11_3_2]
Length = 287
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 57/128 (44%), Positives = 86/128 (67%), Gaps = 4/128 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++VNKPKG TSF V KL++++K KK+GH GTLDP+ATG+++VCVGKATKL +
Sbjct: 4 IIVVNKPKGITSFDVIRKLKKILKTKKIGHTGTLDPLATGIMLVCVGKATKLASDLEAKD 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV- 429
K Y F +G AT T+D + I E + E+++++ F G I Q+PPM+SAIK+
Sbjct: 64 KIYIADFDIGYATDTYDIEGKKIAENIIE-VSKENLKQSIKKFIGNIKQIPPMYSAIKID 122
Query: 430 --RVFHFS 435
+++H +
Sbjct: 123 GNKLYHLA 130
>gi|385802119|ref|YP_005838522.1| tRNA pseudouridine synthase B [Gardnerella vaginalis HMP9231]
gi|333393211|gb|AEF31129.1| tRNA pseudouridine synthase B [Gardnerella vaginalis HMP9231]
Length = 400
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/129 (46%), Positives = 78/129 (60%), Gaps = 10/129 (7%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++LV+KPKG TS V R L+ K+VGHAGTLDPMATGLLI+ G AT+L++ G
Sbjct: 11 ILLVDKPKGVTSHDVVSCARGLLHTKRVGHAGTLDPMATGLLILGFGNATRLLNYLLGHD 70
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHI------KDEDIRK----AAASFRGEIWQV 420
K Y V RLGE+T+T DAD V+ E+ DE +++ A +F G I Q
Sbjct: 71 KTYEAVIRLGESTNTDDADGDVVSSVDDENSILNSANTDEILKELRCVIAKNFTGHIMQT 130
Query: 421 PPMFSAIKV 429
P FSAIK+
Sbjct: 131 PTAFSAIKI 139
>gi|325957044|ref|YP_004292456.1| tRNA pseudouridine synthase B [Lactobacillus acidophilus 30SC]
gi|385817829|ref|YP_005854219.1| tRNA pseudouridine synthase B [Lactobacillus amylovorus GRL1118]
gi|325333609|gb|ADZ07517.1| tRNA pseudouridine synthase B [Lactobacillus acidophilus 30SC]
gi|327183767|gb|AEA32214.1| tRNA pseudouridine synthase B [Lactobacillus amylovorus GRL1118]
Length = 297
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 79/125 (63%), Gaps = 1/125 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++++K K TS V LRR + ++K+GHAGTLDP TG+L + +G+ATKL++
Sbjct: 5 ILVIDKDKDMTSADVVYHLRRALHIRKIGHAGTLDPEVTGVLPIAIGQATKLIELMHTRP 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG AT ++DA V++ E +H E+I+ SF+GEI QVPP++SA+KV
Sbjct: 65 KKYEGQGLLGYATDSYDATGTVLKEEKLDHPFTTEEIQAGMDSFKGEIEQVPPIYSAVKV 124
Query: 430 RVFHF 434
H
Sbjct: 125 NGKHL 129
>gi|359768072|ref|ZP_09271852.1| tRNA pseudouridine synthase B [Gordonia polyisoprenivorans NBRC
16320]
gi|359314649|dbj|GAB24685.1| tRNA pseudouridine synthase B [Gordonia polyisoprenivorans NBRC
16320]
Length = 305
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 73/119 (61%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+K G TS V + R++ ++VGHAGTLDPMATG+L++ V +ATKL+
Sbjct: 11 LVIVDKAAGITSHDVVSRCRKIFNTRRVGHAGTLDPMATGVLVIGVERATKLLGLLSLTT 70
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ RLG AT T D + +I R I D++I +A A G+I QVP SAIKV
Sbjct: 71 KSYTATIRLGAATDTDDREGRIISRGAVSAICDDEITRAVADLTGDISQVPAKVSAIKV 129
>gi|384135118|ref|YP_005517832.1| tRNA pseudouridine synthase B [Alicyclobacillus acidocaldarius
subsp. acidocaldarius Tc-4-1]
gi|339289203|gb|AEJ43313.1| tRNA pseudouridine synthase B [Alicyclobacillus acidocaldarius
subsp. acidocaldarius Tc-4-1]
Length = 302
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 76/119 (63%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KPKG TS V ++RR + V++VGHAGTLDPMATGLL++CVG+ T+L++
Sbjct: 7 VLLIDKPKGMTSHDVVHRVRRKLGVRRVGHAGTLDPMATGLLMICVGRVTRLLEYLGQGD 66
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G G T T DA+ V+ + + +R+AAA GEI Q PP +SAI +
Sbjct: 67 KEYCGTVVFGVGTDTDDAEGTVVAQAQATGLDLAAVREAAARLTGEIRQRPPAYSAIHI 125
>gi|257055499|ref|YP_003133331.1| tRNA pseudouridine synthase B [Saccharomonospora viridis DSM 43017]
gi|256585371|gb|ACU96504.1| tRNA pseudouridine synthase B [Saccharomonospora viridis DSM 43017]
Length = 295
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 73/119 (61%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+KP G TS V K+RR ++ +KVGHAGTLDPMATG+L++ VG+ATKL+
Sbjct: 10 LLIVDKPGGMTSHDVVAKVRRFLRTRKVGHAGTLDPMATGVLVLGVGRATKLLGHLALDR 69
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y LG AT+T DA+ V ++D DI A+ G+I Q P SA+KV
Sbjct: 70 KAYLATIVLGAATTTDDAEGEVTSSADASGVRDSDIAAEIAALTGDILQKPSAVSAVKV 128
>gi|67920325|ref|ZP_00513845.1| tRNA pseudouridine synthase B [Crocosphaera watsonii WH 8501]
gi|67857809|gb|EAM53048.1| tRNA pseudouridine synthase B [Crocosphaera watsonii WH 8501]
Length = 297
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 54/115 (46%), Positives = 73/115 (63%), Gaps = 1/115 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+NKP G+TS K+RRL+ +KKVGH GTLDP ATG+L + VGKAT+L+ + K Y
Sbjct: 7 LNKPSGFTSHDCVAKVRRLLNIKKVGHGGTLDPAATGVLPIAVGKATRLLP-FLPENKAY 65
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
R G T+T D VIQR+ H+ E+I+ F GEI Q+PP++SAI+
Sbjct: 66 RATIRFGMQTTTDDLQGEVIQRQSASHLTIEEIKPLFNDFLGEIEQIPPIYSAIQ 120
>gi|163753393|ref|ZP_02160517.1| putative tRNA pseudouridine synthase [Kordia algicida OT-1]
gi|161327125|gb|EDP98450.1| putative tRNA pseudouridine synthase [Kordia algicida OT-1]
Length = 230
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 60/126 (47%), Positives = 80/126 (63%), Gaps = 6/126 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGK----LRRLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G +L++KP W+SF K L+ KVKK VGHAGTLDP+ATGLLI+CVGK TK
Sbjct: 10 GQTLLIDKPLTWSSFQAVNKVKWALKSTFKVKKLKVGHAGTLDPLATGLLIICVGKHTKK 69
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+ +QG K Y+G +G T ++D +S + + P +HI E I + F GEI QVPP
Sbjct: 70 ISEFQGQAKEYTGTITVGGTTPSYDLESEINETFPTDHITGELIHETTKQFLGEIDQVPP 129
Query: 423 MFSAIK 428
+FSA+K
Sbjct: 130 VFSALK 135
>gi|350572307|ref|ZP_08940611.1| tRNA pseudouridine synthase B [Neisseria wadsworthii 9715]
gi|349790430|gb|EGZ44341.1| tRNA pseudouridine synthase B [Neisseria wadsworthii 9715]
Length = 338
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 71/118 (60%), Gaps = 1/118 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP G +S + K RR+ +K GH G LDP+ATGLL VC G+ATK
Sbjct: 45 VLLLDKPTGLSSNSALQKARRIFNAEKAGHTGVLDPLATGLLPVCFGEATKFAQYLLDAD 104
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
KGY+ +LGEAT+T DA+ +I P + E + A + G I QVPPMFSA+K
Sbjct: 105 KGYTATLKLGEATTTGDAEGEIIATAPIPESR-EGFQAACTALTGAIRQVPPMFSALK 161
>gi|319952595|ref|YP_004163862.1| tRNA pseudouridine synthase b [Cellulophaga algicola DSM 14237]
gi|319421255|gb|ADV48364.1| tRNA pseudouridine synthase B [Cellulophaga algicola DSM 14237]
Length = 236
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 81/126 (64%), Gaps = 6/126 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKL----RRLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G +L++KP W+SF + RR ++KK VGHAGTLDP+ATGLL++C GK+TK
Sbjct: 10 GQTLLIDKPLEWSSFQAVNSIKWSIRRKFELKKIKVGHAGTLDPLATGLLLICTGKSTKT 69
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ QG K Y+G LG T ++D +S + + P EHI + I++A F GEI Q PP
Sbjct: 70 INELQGQAKEYTGTITLGGTTPSYDLESEINETFPTEHITEALIKEATQQFLGEIEQAPP 129
Query: 423 MFSAIK 428
+FSA+K
Sbjct: 130 IFSALK 135
>gi|302537266|ref|ZP_07289608.1| tRNA pseudouridine synthase B [Streptomyces sp. C]
gi|302446161|gb|EFL17977.1| tRNA pseudouridine synthase B [Streptomyces sp. C]
Length = 302
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 58/134 (43%), Positives = 78/134 (58%), Gaps = 4/134 (2%)
Query: 297 STELPPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCV 356
ST T DG +V+V+KP G+TS V K+R + K ++VGHAGTLDPMATG+L++ V
Sbjct: 2 STNAGKTPDG----LVIVDKPSGFTSHDVVAKMRGIAKTRRVGHAGTLDPMATGVLVLGV 57
Query: 357 GKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGE 416
KATKL+ K Y G RLG++T T DA+ + + E + A GE
Sbjct: 58 EKATKLLGHLALTEKEYLGTIRLGQSTLTDDAEGEITSSADASGVTREAVDAGIAKLTGE 117
Query: 417 IWQVPPMFSAIKVR 430
I QVP SAIK++
Sbjct: 118 IMQVPSKVSAIKIK 131
>gi|416376169|ref|ZP_11683434.1| tRNA pseudouridine synthase B [Crocosphaera watsonii WH 0003]
gi|357266413|gb|EHJ15043.1| tRNA pseudouridine synthase B [Crocosphaera watsonii WH 0003]
Length = 297
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 54/115 (46%), Positives = 73/115 (63%), Gaps = 1/115 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+NKP G+TS K+RRL+ +KKVGH GTLDP ATG+L + VGKAT+L+ + K Y
Sbjct: 7 LNKPSGFTSHDCVAKVRRLLNIKKVGHGGTLDPAATGVLPIAVGKATRLLP-FLPENKAY 65
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
R G T+T D VIQR+ H+ E+I+ F GEI Q+PP++SAI+
Sbjct: 66 RATIRFGMQTTTDDLQGEVIQRQSASHLTIEEIKPLFNDFLGEIEQIPPIYSAIQ 120
>gi|399907831|ref|ZP_10776383.1| tRNA pseudouridine synthase B [Halomonas sp. KM-1]
Length = 305
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 74/122 (60%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P ++L++KPKG +S ++RRL++ +K GH GTLDPMATGLL VC+G+ATK
Sbjct: 9 PVNGVLLLDKPKGASSNHALQRVRRLLQAQKAGHTGTLDPMATGLLPVCLGEATKFSAHL 68
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
K Y +LG T T DA+ VI+R + D+ + FRGEI Q PPM+SA
Sbjct: 69 LEADKVYRTRVQLGAVTDTGDAEGEVIERCAVPPLTAADVERVLERFRGEIEQTPPMYSA 128
Query: 427 IK 428
+K
Sbjct: 129 LK 130
>gi|228477398|ref|ZP_04062034.1| tRNA pseudouridine synthase B [Streptococcus salivarius SK126]
gi|228250833|gb|EEK10021.1| tRNA pseudouridine synthase B [Streptococcus salivarius SK126]
Length = 293
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 76/119 (63%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR++++ KK+GH GTLDP TG+L + VGKAT++++
Sbjct: 5 IINLKKEAGMTSHDAVFKLRKILQEKKIGHGGTLDPDVTGVLPIAVGKATRVIEYMTEAG 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G +G +T+T DA ++Q P + +E + KA ASF GEI Q+PPM+SA+KV
Sbjct: 65 KVYEGEITIGFSTTTEDASGEIVQITPVTELDEEAVDKAMASFEGEITQIPPMYSAVKV 123
>gi|346992025|ref|ZP_08860097.1| tRNA pseudouridine synthase B [Ruegeria sp. TW15]
Length = 301
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 58/118 (49%), Positives = 77/118 (65%), Gaps = 1/118 (0%)
Query: 312 VLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIK 371
++V+KP G TS V K+R + KK GHAGTLDP ATG+L V +G+ATK V +K
Sbjct: 14 LVVDKPAGMTSTAVVNKVRWAMDAKKAGHAGTLDPEATGVLAVALGEATKTVPYITDALK 73
Query: 372 GYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
Y+ RLG+AT+T DA+ VI E DEDI++A + F G+I QVPP FSA+K+
Sbjct: 74 AYTFTVRLGQATNTDDAEGEVIS-ESSARPTDEDIKQALSPFLGDIMQVPPKFSAVKI 130
>gi|227872008|ref|ZP_03990393.1| tRNA pseudouridine 55 synthase [Oribacterium sinus F0268]
gi|227842151|gb|EEJ52396.1| tRNA pseudouridine 55 synthase [Oribacterium sinus F0268]
Length = 531
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 57/119 (47%), Positives = 72/119 (60%), Gaps = 1/119 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ VNK KG TSF V LRR+++ KK+GH GTLDPMA G+L+VCVGKATK VD
Sbjct: 4 IINVNKEKGMTSFDVLRALRRILREKKMGHTGTLDPMAEGVLLVCVGKATKYVDALMAKE 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y LG T T D+ ++ E I EDI K F G+ Q+PPM+SA K+
Sbjct: 64 KIYQAELTLGIETDTEDSTGKILSEEEVS-ISKEDIEKILPRFLGKQEQIPPMYSAKKL 121
>gi|392949051|ref|ZP_10314648.1| tRNA pseudouridine synthase B [Lactobacillus pentosus KCA1]
gi|392435769|gb|EIW13696.1| tRNA pseudouridine synthase B [Lactobacillus pentosus KCA1]
Length = 307
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 55/115 (47%), Positives = 69/115 (60%), Gaps = 1/115 (0%)
Query: 316 KPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSG 375
KP+G TSF K+RRL + +KVGH+GTLDP G+L +C+G ATK+V K Y G
Sbjct: 10 KPRGMTSFDCVAKIRRLYQTRKVGHSGTLDPNVDGVLPICIGNATKVVQFLVASGKEYQG 69
Query: 376 VFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
LG AT+T D D I R+ + D I A A GEI Q+PPMFSA+KV
Sbjct: 70 SITLGFATTTEDLDGDEIARQAVDAPFSDAAIDAALAQMTGEITQIPPMFSAVKV 124
>gi|415886617|ref|ZP_11548397.1| tRNA pseudouridine synthase B [Bacillus methanolicus MGA3]
gi|387587304|gb|EIJ79627.1| tRNA pseudouridine synthase B [Bacillus methanolicus MGA3]
Length = 304
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 52/115 (45%), Positives = 74/115 (64%), Gaps = 1/115 (0%)
Query: 316 KPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSG 375
KPKG TS KLR+++K+KK+GH GTLDP G+L +C+GKATK+ + K Y G
Sbjct: 9 KPKGMTSHDCVFKLRKMLKIKKIGHTGTLDPDVNGVLPICIGKATKVAEYITEAGKTYEG 68
Query: 376 VFRLGEATSTWDADSPVIQREP-WEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
+G +T+T DA ++++ P + E+I + SFRGEI Q PPM+SA+KV
Sbjct: 69 EVTIGYSTTTEDASGDIVEQMPGIKTFTREEILQVLHSFRGEIVQTPPMYSAVKV 123
>gi|415711927|ref|ZP_11464463.1| tRNA pseudouridine synthase B [Gardnerella vaginalis 55152]
gi|388057660|gb|EIK80485.1| tRNA pseudouridine synthase B [Gardnerella vaginalis 55152]
Length = 400
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 60/129 (46%), Positives = 78/129 (60%), Gaps = 10/129 (7%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++LV+KPKG TS V R L+ K+VGHAGTLDPMATGLLI+ G AT+L++ G
Sbjct: 11 ILLVDKPKGVTSHDVVSCARGLLHTKRVGHAGTLDPMATGLLILGFGNATRLLNYLLGHD 70
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH------IKDEDIRK----AAASFRGEIWQV 420
K Y V RLGE+T+T DAD V+ E+ DE +++ A +F G I Q
Sbjct: 71 KTYEAVIRLGESTNTDDADGDVVSSVNDENGILNSANTDEILKELRCVVAKNFTGHIMQT 130
Query: 421 PPMFSAIKV 429
P FSAIK+
Sbjct: 131 PTAFSAIKI 139
>gi|170077110|ref|YP_001733748.1| tRNA pseudouridine synthase B [Synechococcus sp. PCC 7002]
gi|169884779|gb|ACA98492.1| tRNA pseudouridine synthase B [Synechococcus sp. PCC 7002]
Length = 313
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 54/115 (46%), Positives = 74/115 (64%), Gaps = 1/115 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+ KP GWTS GKLRRL+ +KK+GH GTLDPMATG+L + VGKAT+L+ +Y K Y
Sbjct: 18 LQKPAGWTSHDCVGKLRRLLGLKKIGHGGTLDPMATGVLPIAVGKATRLL-QYLPKQKSY 76
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
G+ R G T+T D + VI ++ + +I++ F G I Q+PP FSAI+
Sbjct: 77 QGIVRFGVKTTTDDLEGEVITQKACSTLTLAEIQRVLPDFFGTITQIPPAFSAIQ 131
>gi|407718149|ref|YP_006795554.1| tRNA pseudouridine synthase B [Leuconostoc carnosum JB16]
gi|407241905|gb|AFT81555.1| tRNA pseudouridine synthase B [Leuconostoc carnosum JB16]
Length = 302
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 80/129 (62%), Gaps = 4/129 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++++KP+G TSF V K+RR + ++VGHAGTLDP G+L+V +GKATKL+D Q
Sbjct: 10 IIVIDKPRGVTSFDVVAKVRRAIGQRRVGHAGTLDPNVDGVLVVALGKATKLIDELQTRP 69
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG AT + D D V++ + I +A A +G I Q PPMFSA+KV
Sbjct: 70 KRYIGEITLGFATESEDLDGEVVEETTITTPFSNRVIDEAIAELQGHIKQTPPMFSAVKV 129
Query: 430 ---RVFHFS 435
R++ ++
Sbjct: 130 NGKRLYEYA 138
>gi|332711624|ref|ZP_08431555.1| tRNA pseudouridine synthase B [Moorea producens 3L]
gi|332349602|gb|EGJ29211.1| tRNA pseudouridine synthase B [Moorea producens 3L]
Length = 302
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 52/117 (44%), Positives = 75/117 (64%), Gaps = 1/117 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+NKP GWTS K+RRL+++K+VGH GTLDP ATG+L + +GKAT+L+ +Y K Y
Sbjct: 13 LNKPAGWTSHDCVAKVRRLLRLKRVGHGGTLDPAATGVLPIALGKATRLL-QYMQQDKAY 71
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVR 430
RLG T+T D + VI + + E ++ F G+I QVPPM+SAI+++
Sbjct: 72 KATVRLGVRTTTDDLEGEVIATQSAAQLTLELVKGLLKQFEGKIQQVPPMYSAIQIK 128
>gi|421894437|ref|ZP_16324926.1| tRNA pseudouridine synthase B [Pediococcus pentosaceus IE-3]
gi|385272741|emb|CCG90298.1| tRNA pseudouridine synthase B [Pediococcus pentosaceus IE-3]
Length = 299
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 78/121 (64%), Gaps = 1/121 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ +NK +G TS V K+R +++ KKVGH+GTLDP G+L +CVG+ATK+VD G
Sbjct: 4 IIPINKERGMTSHDVVAKVRGILRTKKVGHSGTLDPSVDGVLPICVGRATKVVDYLMGFG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T D D V++ + + + +E I + + G + Q+PPM+SA+KV
Sbjct: 64 KVYQGSITLGFSTTTEDLDGEVVETKKLDKPLTNEQINQTLTAMTGTLVQIPPMYSAVKV 123
Query: 430 R 430
+
Sbjct: 124 K 124
>gi|378717573|ref|YP_005282462.1| tRNA pseudouridine synthase B [Gordonia polyisoprenivorans VH2]
gi|375752276|gb|AFA73096.1| tRNA pseudouridine synthase B [Gordonia polyisoprenivorans VH2]
Length = 305
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 73/119 (61%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+K G TS V + R++ ++VGHAGTLDPMATG+L++ V +ATKL+
Sbjct: 11 LVIVDKAAGITSHDVVSRCRKIFNTRRVGHAGTLDPMATGVLVIGVERATKLLGLLSLTT 70
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ RLG AT T D + +I R I D++I +A A G+I QVP SAIKV
Sbjct: 71 KSYTATIRLGAATDTDDREGRIISRGAVSAICDDEITRAVADLTGDISQVPAKVSAIKV 129
>gi|295706240|ref|YP_003599315.1| tRNA pseudouridine synthase B [Bacillus megaterium DSM 319]
gi|294803899|gb|ADF40965.1| tRNA pseudouridine synthase B [Bacillus megaterium DSM 319]
Length = 305
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 79/121 (65%), Gaps = 1/121 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++++KP G TS K+R+L++ KKVGH GTLDP TG+L +C+G+ATK+V+ G
Sbjct: 4 VLILHKPAGLTSHDCVFKVRKLLRTKKVGHTGTLDPDVTGVLPICIGRATKIVEYLTGAT 63
Query: 371 KGYSGVFRLGEATSTWDADSPVI-QREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T D+ V+ +++ + I + +S GE+ QVPPM+SA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDSSGEVVEEKKVVDSFSRAQIEEVLSSMTGELQQVPPMYSAVKV 123
Query: 430 R 430
+
Sbjct: 124 K 124
>gi|291523280|emb|CBK81573.1| tRNA pseudouridine synthase B [Coprococcus catus GD/7]
Length = 306
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 58/126 (46%), Positives = 76/126 (60%), Gaps = 5/126 (3%)
Query: 304 WDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLV 363
+DG M+ V K KG+TS V KLR ++ KK+GH GTLDP ATG+L VC+GK TKL
Sbjct: 2 YDG----MINVCKEKGFTSHDVVAKLRGILHQKKIGHTGTLDPDATGVLPVCLGKGTKLC 57
Query: 364 DRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPM 423
D K Y V LG T T D ++ E ++ + ++R AA SF G+ Q+PPM
Sbjct: 58 DMITDRDKTYRAVMMLGRTTDTQDISGQILT-EKAVNVDEREVRDAAVSFVGDYMQIPPM 116
Query: 424 FSAIKV 429
+SAIKV
Sbjct: 117 YSAIKV 122
>gi|188994434|ref|YP_001928686.1| tRNA pseudouridine synthase B [Porphyromonas gingivalis ATCC 33277]
gi|188594114|dbj|BAG33089.1| putative tRNA pseudouridine synthase B [Porphyromonas gingivalis
ATCC 33277]
Length = 258
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 77/127 (60%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ +KP WTSF + K R R + +KK VGHAGTLDP+A+G++I+C G+ATK
Sbjct: 13 GEVLYFDKPLTWTSFDLVNKFRYRACRRMGIKKLRVGHAGTLDPLASGVMILCTGRATKQ 72
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+D Q K Y RLG TS++D ++ P+EHI + + F G I QVPP
Sbjct: 73 IDVLQAGTKEYIATIRLGATTSSFDKETEPDAFFPYEHITRQSVLDILPRFTGTIEQVPP 132
Query: 423 MFSAIKV 429
+FSA++V
Sbjct: 133 IFSAVRV 139
>gi|347537529|ref|YP_004844954.1| tRNA pseudouridine synthase B [Flavobacterium branchiophilum FL-15]
gi|345530687|emb|CCB70717.1| tRNA pseudouridine synthase B [Flavobacterium branchiophilum FL-15]
Length = 225
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 56/127 (44%), Positives = 74/127 (58%), Gaps = 7/127 (5%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR-------RLVKVKKVGHAGTLDPMATGLLIVCVGKATK 361
G ++L++KP W+SF KL+ RL K K+GHAGTLDP+ATGLLIVC GK TK
Sbjct: 9 GQIILIDKPLQWSSFQAVNKLKYHLMNTYRLPKKYKIGHAGTLDPLATGLLIVCTGKFTK 68
Query: 362 LVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVP 421
+ Q K Y+G LG T ++D ++ + HI ++ I F GEI Q P
Sbjct: 69 KISEIQAQPKEYTGTITLGATTPSYDLETEIDAVFDTNHITEKLIFDTVTFFLGEIDQKP 128
Query: 422 PMFSAIK 428
P+FSAIK
Sbjct: 129 PVFSAIK 135
>gi|443673407|ref|ZP_21138473.1| tRNA pseudouridine synthase B [Rhodococcus sp. AW25M09]
gi|443414038|emb|CCQ16811.1| tRNA pseudouridine synthase B [Rhodococcus sp. AW25M09]
Length = 310
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 74/119 (62%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+K G TS V R+L++ +KVGHAGTLDPMATG+L++ V +ATK++
Sbjct: 16 LLVVDKGPGVTSHDVVASCRKLLRTRKVGHAGTLDPMATGVLVLGVERATKMLGLLSLTT 75
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ RLG +T+T DA+ V+ H+ D DI A + G+I QVP SAIKV
Sbjct: 76 KSYTATVRLGRSTTTDDAEGDVLADTSAAHVSDSDIAIAVSGLTGDIEQVPARVSAIKV 134
>gi|153812989|ref|ZP_01965657.1| hypothetical protein RUMOBE_03396 [Ruminococcus obeum ATCC 29174]
gi|149830936|gb|EDM86026.1| tRNA pseudouridine synthase B [Ruminococcus obeum ATCC 29174]
Length = 294
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 55/116 (47%), Positives = 74/116 (63%), Gaps = 1/116 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+ K KG+TSF V KLR ++ +KK+GH GTLDP A G+L V +GKATKLVD K Y
Sbjct: 7 IRKEKGYTSFDVVAKLRGILHMKKIGHTGTLDPEAEGVLPVVLGKATKLVDLLTEKQKTY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
+ LG T T D V++ +P E + +E++R SF GE Q+PPM+SA+KV
Sbjct: 67 EALLHLGLETDTQDMTGTVLEEKPVE-VTEEEVRTVIRSFLGEQQQIPPMYSALKV 121
>gi|373116098|ref|ZP_09530256.1| tRNA pseudouridine synthase B [Lachnospiraceae bacterium 7_1_58FAA]
gi|371669725|gb|EHO34822.1| tRNA pseudouridine synthase B [Lachnospiraceae bacterium 7_1_58FAA]
Length = 288
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 78/118 (66%), Gaps = 1/118 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++++KP+ WTS VC K+R ++ ++VGHAGTLDPMATG+L V VG+AT+ V+
Sbjct: 5 IIVIDKPQEWTSMDVCAKIRGVLHERRVGHAGTLDPMATGVLPVFVGRATRAVEFASESE 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y +LG T+T D V++ P E + + A A+FRGEI Q+PPM+SA+K
Sbjct: 65 KEYIAGLKLGVVTNTQDTTGQVVEERPVEADR-AALEGALAAFRGEITQIPPMYSALK 121
>gi|377809701|ref|YP_005004922.1| tRNA pseudouridine synthase B [Pediococcus claussenii ATCC BAA-344]
gi|361056442|gb|AEV95246.1| tRNA pseudouridine synthase B [Pediococcus claussenii ATCC BAA-344]
Length = 299
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 55/120 (45%), Positives = 74/120 (61%), Gaps = 1/120 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ +NK + TS V K+RR++ K+VGH+GTLDP G+LIVCVGKATK+ D
Sbjct: 4 IIPINKERKMTSHDVVAKIRRILHTKRVGHSGTLDPNVDGVLIVCVGKATKVSDYLMNSG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T T D D VI + + DE++ K S GEI Q+PPM+SA+KV
Sbjct: 64 KIYRGKITLGFSTITEDLDGEVIASKVLKIPFTDEELAKTFNSLTGEIIQIPPMYSAVKV 123
>gi|365121627|ref|ZP_09338543.1| tRNA pseudouridine synthase B [Tannerella sp. 6_1_58FAA_CT1]
gi|363645117|gb|EHL84391.1| tRNA pseudouridine synthase B [Tannerella sp. 6_1_58FAA_CT1]
Length = 239
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 55/136 (40%), Positives = 82/136 (60%), Gaps = 9/136 (6%)
Query: 309 GTMVLVNKPKGWTSF----TVCGKLRRLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ +KP WTSF V ++ R +K+KK VGHAGTLDP+A+G++I+C GKATKL
Sbjct: 6 GEVLYFDKPLYWTSFKLVKIVRTRISRKLKIKKIKVGHAGTLDPLASGVMIICTGKATKL 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y +LG T ++D ++ + P EHI E + F G I QVPP
Sbjct: 66 IESFQYQTKEYVATLQLGATTPSFDRETEIDGVYPTEHITREGVETVLGQFVGSIQQVPP 125
Query: 423 MFSAIKV---RVFHFS 435
++SA K+ R + F+
Sbjct: 126 VYSACKIDGRRAYDFA 141
>gi|359428707|ref|ZP_09219737.1| tRNA pseudouridine synthase B [Acinetobacter sp. NBRC 100985]
gi|358235893|dbj|GAB01276.1| tRNA pseudouridine synthase B [Acinetobacter sp. NBRC 100985]
Length = 297
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 69/118 (58%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+ L+NKP G +S + K+RRL +K GH G LDP+ATGLL +C+G+ATK
Sbjct: 12 VFLLNKPLGLSSNSALQKVRRLFNAQKAGHTGALDPLATGLLPICLGEATKFSHYLLDST 71
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y +LG+ TST D + V+Q + E I FRG+I QVPPM+SA+K
Sbjct: 72 KRYQTTVKLGQTTSTGDVEGVVLQERVVSALNQEKIEAVLEQFRGDIQQVPPMYSALK 129
>gi|289450671|ref|YP_003474590.1| tRNA pseudouridine synthase B [Clostridiales genomosp. BVAB3 str.
UPII9-5]
gi|289185218|gb|ADC91643.1| tRNA pseudouridine synthase B [Clostridiales genomosp. BVAB3 str.
UPII9-5]
Length = 380
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 55/127 (43%), Positives = 75/127 (59%), Gaps = 8/127 (6%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + KP G TSF V +LRRL +K++GH GTLDP A G L +C+G+AT V G
Sbjct: 6 IINIYKPVGMTSFDVVNRLRRLTSIKRIGHCGTLDPFAEGCLPICLGRATAAVRFMDGYD 65
Query: 371 KGYSGVFRLGEATSTW-------DADSPVIQR-EPWEHIKDEDIRKAAASFRGEIWQVPP 422
K YS LG +T + DADS + ++ W+ E IR+A A+ GE QVPP
Sbjct: 66 KSYSATLVLGASTDSGDCTGRLTDADSRIAEKWSTWQAADGETIRRAVANLTGEQMQVPP 125
Query: 423 MFSAIKV 429
M+SA+KV
Sbjct: 126 MYSAVKV 132
>gi|350552892|ref|ZP_08922083.1| tRNA pseudouridine synthase B [Thiorhodospira sibirica ATCC 700588]
gi|349792710|gb|EGZ46561.1| tRNA pseudouridine synthase B [Thiorhodospira sibirica ATCC 700588]
Length = 307
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 76/118 (64%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KP G++S +++RL + +K GH G+LDP+ATG+L +C+G+ATK+
Sbjct: 16 IVLLDKPAGYSSNQALQRVKRLFRARKAGHTGSLDPLATGVLPICLGEATKVSGYLLDAD 75
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y V RLGEAT+T DA+ VI R P ++ + + A G + Q+PPM+SA+K
Sbjct: 76 KYYQAVCRLGEATTTGDAEGEVIARYPLPALEPAHVAQVFAGLHGPLEQIPPMYSALK 133
>gi|365845293|ref|ZP_09386076.1| tRNA pseudouridine synthase B [Flavonifractor plautii ATCC 29863]
gi|364561186|gb|EHM39098.1| tRNA pseudouridine synthase B [Flavonifractor plautii ATCC 29863]
Length = 288
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 78/118 (66%), Gaps = 1/118 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++++KP+ WTS VC K+R ++ ++VGHAGTLDPMATG+L V VG+AT+ V+
Sbjct: 5 IIVIDKPQEWTSMDVCAKIRGVLHERRVGHAGTLDPMATGVLPVFVGRATRAVEFASESE 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y +LG T+T D V++ P E + + A A+FRGEI Q+PPM+SA+K
Sbjct: 65 KEYIAGLKLGVVTNTQDTTGQVVEERPVEADR-AALEGALAAFRGEITQIPPMYSALK 121
>gi|260494541|ref|ZP_05814671.1| tRNA pseudouridine synthase B [Fusobacterium sp. 3_1_33]
gi|260197703|gb|EEW95220.1| tRNA pseudouridine synthase B [Fusobacterium sp. 3_1_33]
Length = 287
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 58/128 (45%), Positives = 85/128 (66%), Gaps = 4/128 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++VNKPKG TSF V KL++++K KK+GH GTLDP+ATG+++VCVG+ATKL +
Sbjct: 4 IIVVNKPKGITSFDVIRKLKKILKTKKIGHTGTLDPLATGVMLVCVGRATKLASDLEAKD 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV- 429
K Y F +G AT T+D + I E I E++ ++ F G I QVPPM+SAIK+
Sbjct: 64 KIYIADFDIGYATDTYDIEGKKIAENTIE-ISKENLEQSIKKFIGNIKQVPPMYSAIKID 122
Query: 430 --RVFHFS 435
+++H +
Sbjct: 123 GNKLYHLA 130
>gi|258511418|ref|YP_003184852.1| tRNA pseudouridine synthase B [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
gi|257478144|gb|ACV58463.1| tRNA pseudouridine synthase B [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
Length = 302
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 76/119 (63%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP+G TS V ++RR + V++VGHAGTLDPMATGLL++CVG+ T+L++
Sbjct: 7 VLLIDKPQGMTSHDVVNRVRRKLGVRRVGHAGTLDPMATGLLMICVGRVTRLLEYLGQGD 66
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K YSG G T T DA+ V+ + + +R+AA GEI Q PP +SA+ +
Sbjct: 67 KDYSGTVVFGVGTDTDDAEGTVVAQASAAGLDLAAVRQAALRLTGEIRQRPPQYSAVHI 125
>gi|423136560|ref|ZP_17124203.1| tRNA pseudouridine synthase B [Fusobacterium nucleatum subsp.
animalis F0419]
gi|371961714|gb|EHO79338.1| tRNA pseudouridine synthase B [Fusobacterium nucleatum subsp.
animalis F0419]
Length = 287
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 57/128 (44%), Positives = 85/128 (66%), Gaps = 4/128 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++VNKPKG TSF V KL++++K KK+GH GTLDP+ATG+++VCVG+ATKL +
Sbjct: 4 IIVVNKPKGITSFDVIRKLKKILKTKKIGHTGTLDPLATGIMLVCVGRATKLASDLEAKD 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV- 429
K Y F +G AT T+D + I E I E++ ++ F G I Q+PPM+SAIK+
Sbjct: 64 KIYIADFDIGYATDTYDIEGKKIAENTIE-ISKENLEQSIKKFIGNIKQIPPMYSAIKID 122
Query: 430 --RVFHFS 435
+++H +
Sbjct: 123 GNKLYHLA 130
>gi|110678024|ref|YP_681031.1| tRNA pseudouridine synthase B [Roseobacter denitrificans OCh 114]
gi|123362278|sp|Q16CE8.1|TRUB_ROSDO RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|109454140|gb|ABG30345.1| tRNA pseudouridine synthase B [Roseobacter denitrificans OCh 114]
Length = 303
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 58/118 (49%), Positives = 78/118 (66%), Gaps = 1/118 (0%)
Query: 312 VLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIK 371
++V+KP G TS V K+R + KK GHAGTLDP ATG+L V +G+ATK V G +K
Sbjct: 14 LIVDKPAGLTSTAVVNKVRWALDAKKAGHAGTLDPDATGVLAVALGEATKTVPYVTGALK 73
Query: 372 GYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
Y RLG+AT+T DA+ VI + +DE I++A ++F G+I QVPP FSA+KV
Sbjct: 74 AYEFEIRLGQATNTDDAEGEVIAQSDLRPTEDE-IKEALSAFIGDIEQVPPQFSAVKV 130
>gi|118617697|ref|YP_906029.1| tRNA pseudouridine synthase B [Mycobacterium ulcerans Agy99]
gi|189036545|sp|A0PQD9.1|TRUB_MYCUA RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|118569807|gb|ABL04558.1| tRNA pseudouridine synthase B TruB [Mycobacterium ulcerans Agy99]
Length = 301
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 55/126 (43%), Positives = 76/126 (60%), Gaps = 2/126 (1%)
Query: 306 GP-FG-TMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLV 363
GP FG +V+V+KP TS V G+ RR+ +++GHAGTLDPMATG+L++ + +ATK++
Sbjct: 7 GPGFGPGIVVVDKPGAMTSHDVVGRCRRIFGTRRLGHAGTLDPMATGVLVIGIERATKIL 66
Query: 364 DRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPM 423
K Y+ RLG+ TST DA+ + EH+ E I A G+I QVP
Sbjct: 67 GLLIATSKSYAATIRLGQTTSTEDAEGEPLASVSAEHVAPEAIAAAILDLTGDIRQVPSA 126
Query: 424 FSAIKV 429
SAIKV
Sbjct: 127 VSAIKV 132
>gi|406573826|ref|ZP_11049568.1| tRNA pseudouridine synthase B [Janibacter hoylei PVAS-1]
gi|404556776|gb|EKA62236.1| tRNA pseudouridine synthase B [Janibacter hoylei PVAS-1]
Length = 306
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 55/120 (45%), Positives = 73/120 (60%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP GW+S V + RRL + +KVGHAGTLDPMATG+L++ VG+ TKL+ G
Sbjct: 5 LVVVDKPAGWSSHDVVARCRRLYRTRKVGHAGTLDPMATGVLVLGVGRGTKLLTFLVGAD 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVR 430
K Y+ RLG+AT T DA+ V + A A G+I QVP SAIKV+
Sbjct: 65 KEYTATIRLGQATITDDAEGEVTAVGDVAGTDRPALDAAVARLTGDIEQVPSSVSAIKVK 124
>gi|254304272|ref|ZP_04971630.1| pseudouridylate synthase [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
gi|148324464|gb|EDK89714.1| pseudouridylate synthase [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
Length = 290
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 57/128 (44%), Positives = 85/128 (66%), Gaps = 4/128 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++VNKPKG TSF V KL++++K KK+GH GTLDP+ATG++++C+GKATKL +
Sbjct: 7 IIIVNKPKGITSFDVIRKLKKILKTKKIGHTGTLDPLATGVMLICIGKATKLASDLEAKD 66
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV- 429
K Y F +G AT T+D + I E + ED+ ++ F G I QVPPM+SAIK+
Sbjct: 67 KVYIADFDIGYATDTYDIEGKKIA-ENIIDVSKEDLEQSIKKFIGNIKQVPPMYSAIKID 125
Query: 430 --RVFHFS 435
+++H +
Sbjct: 126 GNKLYHLA 133
>gi|374313825|ref|YP_005060254.1| tRNA pseudouridine 55 synthetase [Serratia symbiotica str. 'Cinara
cedri']
gi|363988051|gb|AEW44242.1| tRNA pseudouridine 55 synthetase [Serratia symbiotica str. 'Cinara
cedri']
Length = 320
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 79/118 (66%), Gaps = 1/118 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L+NKP+G +S K++RL K+ GH GTLDP+A+G+L +C+G+ATKL
Sbjct: 22 ILLLNKPRGLSSNDAVQKVKRLYNAKRAGHTGTLDPLASGMLPICLGEATKLSQFILNSD 81
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y + +LG++T+T DAD + Q+ P + E + A ++FRG+I Q+PPM+SA+K
Sbjct: 82 KHYRVIAKLGQSTNTLDADGTITQQRPIIFAR-EQLDTALSNFRGKIQQIPPMYSALK 138
>gi|198274128|ref|ZP_03206660.1| hypothetical protein BACPLE_00265 [Bacteroides plebeius DSM 17135]
gi|198273206|gb|EDY97475.1| tRNA pseudouridine synthase B [Bacteroides plebeius DSM 17135]
Length = 234
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 56/127 (44%), Positives = 76/127 (59%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ +KP WTSF V K+R R + VKK VGHAGTLDP+ATG++I+C GKATK
Sbjct: 6 GEVLYFDKPLRWTSFAVVNKIRYHISRKLGVKKIKVGHAGTLDPLATGVMIICTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y +LG T ++D + + P +HI E + + F G I QVPP
Sbjct: 66 IEEFQYHTKEYIATLQLGATTPSFDLEKEIDATYPTDHITKEMVEETLKKFVGTIEQVPP 125
Query: 423 MFSAIKV 429
FSA KV
Sbjct: 126 AFSACKV 132
>gi|409358303|ref|ZP_11236666.1| tRNA pseudouridine synthase B [Dietzia alimentaria 72]
Length = 303
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 71/119 (59%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G +S V +LRR +KVGHAGTLDPMATG+L+V + +ATK++
Sbjct: 16 LVVVDKPGGMSSHDVVARLRRFFGTRKVGHAGTLDPMATGVLVVGIERATKMLGLLALET 75
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y RLG+ T+T DA+ + + DE I A+ GEI QVP SAIKV
Sbjct: 76 KSYEATIRLGQTTATDDAEGEITATADASEVSDEAIDAGVAALTGEIDQVPSAVSAIKV 134
>gi|229031440|ref|ZP_04187440.1| tRNA pseudouridine synthase B [Bacillus cereus AH1271]
gi|228729729|gb|EEL80709.1| tRNA pseudouridine synthase B [Bacillus cereus AH1271]
Length = 307
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 53/120 (44%), Positives = 78/120 (65%), Gaps = 1/120 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+V
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIVQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + + I +++ A A+ G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETKHVDRVITRKEVEGALAALTGTIEQMPPMFSAVKV 123
>gi|15895081|ref|NP_348430.1| tRNA pseudouridine synthase B [Clostridium acetobutylicum ATCC 824]
gi|337737022|ref|YP_004636469.1| tRNA pseudouridine synthase B [Clostridium acetobutylicum DSM 1731]
gi|384458530|ref|YP_005670950.1| tRNA pseudouridine synthase B [Clostridium acetobutylicum EA 2018]
gi|37089633|sp|Q97I48.1|TRUB_CLOAB RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|15024778|gb|AAK79770.1|AE007689_8 Pseudouridine synthase [Clostridium acetobutylicum ATCC 824]
gi|325509219|gb|ADZ20855.1| tRNA pseudouridine synthase B [Clostridium acetobutylicum EA 2018]
gi|336292274|gb|AEI33408.1| tRNA pseudouridine synthase B [Clostridium acetobutylicum DSM 1731]
Length = 289
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 76/114 (66%), Gaps = 1/114 (0%)
Query: 316 KPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSG 375
KP G TSF V +++++ K KKVGH GTLDP+A+G+L +C+GKATK+VD K Y
Sbjct: 9 KPIGLTSFDVVRQVKKISKEKKVGHTGTLDPLASGVLPICIGKATKIVDFVMEGKKIYDA 68
Query: 376 VFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
+LGE + T+D + +++ + +I +A SF+GEI QVPPM+SA+KV
Sbjct: 69 EMKLGEISDTYDREGKILKVNQVTS-SENNIVEAIMSFQGEILQVPPMYSALKV 121
>gi|423328813|ref|ZP_17306620.1| tRNA pseudouridine synthase B [Myroides odoratimimus CCUG 3837]
gi|404604375|gb|EKB04009.1| tRNA pseudouridine synthase B [Myroides odoratimimus CCUG 3837]
Length = 238
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 80/126 (63%), Gaps = 6/126 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK------KVGHAGTLDPMATGLLIVCVGKATKL 362
G ++L++KP W+SF K++ L+K KVGHAGTLDP+A+GLLI+C GKATK
Sbjct: 12 GQILLIDKPLHWSSFQAVNKIKWLLKKHFDLKKIKVGHAGTLDPLASGLLIICTGKATKQ 71
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+ QG IK Y+G LG T ++D ++ + Q P EHI + + +A SF G Q PP
Sbjct: 72 ISELQGQIKEYTGTITLGGTTPSYDLETEIDQTFPTEHITEALLEEARLSFMGTTEQRPP 131
Query: 423 MFSAIK 428
+FSA+K
Sbjct: 132 IFSALK 137
>gi|317471565|ref|ZP_07930912.1| tRNA pseudouridine synthase B [Anaerostipes sp. 3_2_56FAA]
gi|316900968|gb|EFV22935.1| tRNA pseudouridine synthase B [Anaerostipes sp. 3_2_56FAA]
Length = 253
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 56/116 (48%), Positives = 73/116 (62%), Gaps = 1/116 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+ K G+TS V KLR ++K KK+GH GTLDP ATG+L VC+GKATKL D K Y
Sbjct: 10 IYKEAGFTSHDVVAKLRGIIKQKKIGHTGTLDPQATGVLPVCLGKATKLCDMLTDTKKEY 69
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
VFRLG T+T D + RE + ++ +RK SF+G Q+PPM+SA+KV
Sbjct: 70 RAVFRLGLTTNTEDIWGETL-RESDISVSEDKVRKTICSFKGGYDQIPPMYSALKV 124
>gi|308234655|ref|ZP_07665392.1| tRNA pseudouridine synthase B [Gardnerella vaginalis ATCC 14018 =
JCM 11026]
Length = 336
Score = 104 bits (260), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 60/129 (46%), Positives = 78/129 (60%), Gaps = 10/129 (7%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++LV+KPKG TS V R L+ K+VGHAGTLDPMATGLLI+ G AT+L++ G
Sbjct: 11 ILLVDKPKGVTSHDVVSCARGLLHTKRVGHAGTLDPMATGLLILGFGNATRLLNYLLGHD 70
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHI------KDEDIRK----AAASFRGEIWQV 420
K Y V RLGE+T+T DAD V+ E+ DE +++ A +F G I Q
Sbjct: 71 KTYEAVIRLGESTNTDDADGDVVSSVDDENSILNSANTDEILKELRCVIAKNFTGHIMQT 130
Query: 421 PPMFSAIKV 429
P FSAIK+
Sbjct: 131 PTAFSAIKI 139
>gi|359406442|ref|ZP_09199134.1| tRNA pseudouridine synthase B [Prevotella stercorea DSM 18206]
gi|357556149|gb|EHJ37770.1| tRNA pseudouridine synthase B [Prevotella stercorea DSM 18206]
Length = 237
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 53/127 (41%), Positives = 75/127 (59%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK------KVGHAGTLDPMATGLLIVCVGKATKL 362
G ++ +NKP G TSF +R+ + V+ K+GHAGTLDP+ATG+L++C GK TK
Sbjct: 6 GEVIAINKPLGMTSFCALAIVRKRICVRLGVKKLKIGHAGTLDPLATGVLVLCTGKFTKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y+ +LG T ++D + PV P + I E I F G+I QVPP
Sbjct: 66 IEEFQMHGKEYTATIQLGATTPSYDMEHPVNATYPTDGITRERIEDVLKQFVGDIEQVPP 125
Query: 423 MFSAIKV 429
FSA KV
Sbjct: 126 TFSACKV 132
>gi|325299410|ref|YP_004259327.1| tRNA pseudouridine synthase B [Bacteroides salanitronis DSM 18170]
gi|324318963|gb|ADY36854.1| tRNA pseudouridine synthase B [Bacteroides salanitronis DSM 18170]
Length = 231
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 55/127 (43%), Positives = 76/127 (59%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ +KP WTSF + K+R R + VKK VGHAGTLDP+ATG++I+C GKATK
Sbjct: 6 GEVLYFDKPYRWTSFALVNKIRYHISRKLGVKKIKVGHAGTLDPLATGVMIICTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y +LG T ++D + + P EHI E + + F G I Q+PP
Sbjct: 66 IEEFQYHTKEYVATLQLGATTPSYDLEKEIDATYPTEHITRELVEETLQRFVGAIEQIPP 125
Query: 423 MFSAIKV 429
FSA KV
Sbjct: 126 AFSACKV 132
>gi|427390287|ref|ZP_18884693.1| tRNA pseudouridine synthase B [Actinobaculum massiliae
ACS-171-V-Col2]
gi|425733302|gb|EKU96108.1| tRNA pseudouridine synthase B [Actinobaculum massiliae
ACS-171-V-Col2]
Length = 338
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 73/119 (61%), Gaps = 1/119 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V G +RRL +KVGHAGTLDPMATG+L++ VG ATKL+ G
Sbjct: 41 IVIVDKPAGVTSHDVVGAMRRLAGTRKVGHAGTLDPMATGILVIGVGAATKLLTYLSGAD 100
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K YS FR G T T D+ V+ P + ++ +A A+ G QVP ++SA KV
Sbjct: 101 KDYSATFRFGVGTDTEDSTGKVMS-APGFSGGEAEVDRAFATLTGSTSQVPSIYSAKKV 158
>gi|348169407|ref|ZP_08876301.1| hypothetical protein SspiN1_02578 [Saccharopolyspora spinosa NRRL
18395]
Length = 302
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 56/134 (41%), Positives = 80/134 (59%), Gaps = 3/134 (2%)
Query: 296 RSTELPPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVC 355
RS + PT P G +V ++KP G TS V ++RR++ ++VGHAGTLDPMATG+L++
Sbjct: 4 RSRKTRPTV--PPGLLV-IDKPAGMTSHDVVSRVRRIMGTRRVGHAGTLDPMATGVLVLG 60
Query: 356 VGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRG 415
+ +ATKL+ K Y RLG AT+T DA+ V+ + +E IR A G
Sbjct: 61 LERATKLLGHLALDTKAYLATIRLGAATTTDDAEGDVVSEVDASAVDEEAIRAGIAELTG 120
Query: 416 EIWQVPPMFSAIKV 429
+I QVP SA+K+
Sbjct: 121 DIQQVPSAVSAVKI 134
>gi|254776117|ref|ZP_05217633.1| tRNA pseudouridine synthase B [Mycobacterium avium subsp. avium
ATCC 25291]
Length = 284
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 51/110 (46%), Positives = 68/110 (61%)
Query: 320 WTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRL 379
TS V G+ RR+ ++VGHAGTLDPMATG+L++ V +ATK++ K YS RL
Sbjct: 1 MTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVLGVERATKILGLLTAAAKSYSATIRL 60
Query: 380 GEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
G+ATST DA+ V++ H+ + I A RG+I QVP SAIKV
Sbjct: 61 GQATSTDDAEGDVVRSVDARHLTSQAIEAAVGGLRGDIHQVPSTVSAIKV 110
>gi|429725907|ref|ZP_19260720.1| tRNA pseudouridine synthase B [Prevotella sp. oral taxon 473 str.
F0040]
gi|429148455|gb|EKX91461.1| tRNA pseudouridine synthase B [Prevotella sp. oral taxon 473 str.
F0040]
Length = 239
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 76/128 (59%), Gaps = 8/128 (6%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRL-------VKVKKVGHAGTLDPMATGLLIVCVGKATK 361
G ++ +KP G TSF + K+R L VK+K VGHAGTLDP+A+G+++VC G+ATK
Sbjct: 6 GQILTFDKPLGLTSFQLVAKVRWLLTRAMGGVKIK-VGHAGTLDPLASGVMVVCTGRATK 64
Query: 362 LVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVP 421
+D Q +K Y RLG T ++D + P+ HI + + F G+IWQ P
Sbjct: 65 QIDTLQAGVKEYIATLRLGATTPSFDLEHPIDYTYATCHIDHQLVETQLKKFIGDIWQTP 124
Query: 422 PMFSAIKV 429
P FSA+KV
Sbjct: 125 PAFSAVKV 132
>gi|312869014|ref|ZP_07729191.1| tRNA pseudouridine synthase B [Lactobacillus oris PB013-T2-3]
gi|311095440|gb|EFQ53707.1| tRNA pseudouridine synthase B [Lactobacillus oris PB013-T2-3]
Length = 299
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 55/124 (44%), Positives = 76/124 (61%), Gaps = 4/124 (3%)
Query: 316 KPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSG 375
K +G TSF +LRR++K +K+GH+GTLDP G+L +CVG ATK V+ K Y G
Sbjct: 9 KERGMTSFDCVSRLRRILKTRKIGHSGTLDPSVDGVLPICVGTATKAVEYLMQSGKVYQG 68
Query: 376 VFRLGEATSTWDADSPVIQREPWE-HIKDEDIRKAAASFRGEIWQVPPMFSAIKV---RV 431
+G AT T D D VI++ P + I DE + A GEI QVPPM+SA+KV R+
Sbjct: 69 ELVIGRATETEDFDGQVIEQAPVKAAISDEAVTAAMTKLTGEITQVPPMYSAVKVNGKRL 128
Query: 432 FHFS 435
+ ++
Sbjct: 129 YEYA 132
>gi|50954471|ref|YP_061759.1| tRNA pseudouridine synthase B [Leifsonia xyli subsp. xyli str.
CTCB07]
gi|54036455|sp|Q6AG41.1|TRUB_LEIXX RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|50950953|gb|AAT88654.1| tRNA pseudouridine synthase B [Leifsonia xyli subsp. xyli str.
CTCB07]
Length = 302
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 76/122 (62%), Gaps = 3/122 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP GWTS V ++RRL +KVGHAGTLDPMATGLL++ + +T+L+ G
Sbjct: 8 LLLIDKPGGWTSHDVVARVRRLAGTRKVGHAGTLDPMATGLLVLGLNSSTRLLTYIVGAE 67
Query: 371 KGYSGVFRLGEATSTWDADSPVIQR---EPWEHIKDEDIRKAAASFRGEIWQVPPMFSAI 427
K Y G RLG AT+T D + +++R + + I + A+ GEI QVP SA+
Sbjct: 68 KEYVGTIRLGAATTTDDIEGEILERAEPAALAAVAESSIAEGIAALTGEIEQVPSAVSAV 127
Query: 428 KV 429
KV
Sbjct: 128 KV 129
>gi|365826418|ref|ZP_09368337.1| hypothetical protein HMPREF0975_00120 [Actinomyces sp. oral taxon
849 str. F0330]
gi|365266098|gb|EHM95816.1| hypothetical protein HMPREF0975_00120 [Actinomyces sp. oral taxon
849 str. F0330]
Length = 375
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 56/121 (46%), Positives = 75/121 (61%), Gaps = 2/121 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++LV+KP+G TS V G RRL +KVGHAGTLDPMATGLL++ +G+AT+ + G
Sbjct: 33 VLLVDKPRGLTSHDVVGVTRRLAATRKVGHAGTLDPMATGLLVLGIGRATRFLTYLVGAD 92
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPW--EHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y RLG T+T DA+ VI + + + +++A AS G I QVP SAIK
Sbjct: 93 KTYESTIRLGMETTTEDAEGQVIAARGCRIDDLIEGRLQEALASLTGRIQQVPSAISAIK 152
Query: 429 V 429
V
Sbjct: 153 V 153
>gi|410456929|ref|ZP_11310776.1| tRNA pseudouridine synthase B [Bacillus bataviensis LMG 21833]
gi|409926903|gb|EKN64054.1| tRNA pseudouridine synthase B [Bacillus bataviensis LMG 21833]
Length = 305
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 56/115 (48%), Positives = 71/115 (61%), Gaps = 1/115 (0%)
Query: 316 KPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSG 375
KP G TS KLR+++K KKVGH GTLDP TG+L +CVGKATK+ + K Y G
Sbjct: 9 KPAGLTSHDCVFKLRKILKTKKVGHTGTLDPDVTGVLPICVGKATKVAEYITDAGKAYEG 68
Query: 376 VFRLGEATSTWDADSPVIQREPWEHIKDED-IRKAAASFRGEIWQVPPMFSAIKV 429
LG +T+T DA V++R+ + I D I + S GEI Q PPMFSA+KV
Sbjct: 69 EVTLGFSTTTEDASGEVVERKSVDRIISRDEIMEILKSLTGEIEQTPPMFSAVKV 123
>gi|422575348|ref|ZP_16650889.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL001PA1]
gi|314923884|gb|EFS87715.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL001PA1]
Length = 295
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 73/119 (61%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+KP G TS V G++RRL+ +KVGHAGTLDPMA+G+L+V V +AT+L+
Sbjct: 8 VLVVDKPAGVTSHQVVGRVRRLMGTRKVGHAGTLDPMASGVLVVGVNRATRLLGHLSLHD 67
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ RLG T T DA+ V I+D I A A GEI QVP SAIKV
Sbjct: 68 KDYTATMRLGVGTVTDDAEGDVTVTTDASAIEDRAIHAAMARQTGEIQQVPAAVSAIKV 126
>gi|282854624|ref|ZP_06263959.1| tRNA pseudouridine synthase B [Propionibacterium acnes J139]
gi|386069724|ref|YP_005984620.1| tRNA pseudouridine synthase B [Propionibacterium acnes ATCC 11828]
gi|422390108|ref|ZP_16470204.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL103PA1]
gi|422458724|ref|ZP_16535375.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL050PA2]
gi|422462994|ref|ZP_16539613.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL060PA1]
gi|422467272|ref|ZP_16543826.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL110PA4]
gi|422469350|ref|ZP_16545875.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL110PA3]
gi|422565398|ref|ZP_16641047.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL082PA2]
gi|282582206|gb|EFB87588.1| tRNA pseudouridine synthase B [Propionibacterium acnes J139]
gi|314966059|gb|EFT10158.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL082PA2]
gi|314981892|gb|EFT25985.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL110PA3]
gi|315090756|gb|EFT62732.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL110PA4]
gi|315095005|gb|EFT66981.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL060PA1]
gi|315104230|gb|EFT76206.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL050PA2]
gi|327328062|gb|EGE69831.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL103PA1]
gi|353454091|gb|AER04610.1| tRNA pseudouridine synthase B [Propionibacterium acnes ATCC 11828]
Length = 295
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 73/119 (61%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+KP G TS V G++RRL+ +KVGHAGTLDPMA+G+L+V V +AT+L+
Sbjct: 8 VLVVDKPAGVTSHQVVGRVRRLMGTRKVGHAGTLDPMASGVLVVGVNRATRLLGHLSLHD 67
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ RLG T T DA+ V I+D I A A GEI QVP SAIKV
Sbjct: 68 KDYTATMRLGVGTVTDDAEGDVTVTTDASAIEDRAIHAAMARQTGEIQQVPAAVSAIKV 126
>gi|295696161|ref|YP_003589399.1| tRNA pseudouridine synthase B [Kyrpidia tusciae DSM 2912]
gi|295411763|gb|ADG06255.1| tRNA pseudouridine synthase B [Kyrpidia tusciae DSM 2912]
Length = 300
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 59/121 (48%), Positives = 81/121 (66%), Gaps = 1/121 (0%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQG 368
G +VL +KP G TS V G++RR + ++++GH GTLDP ATG+L++CVGKAT++ + G
Sbjct: 3 GVLVL-DKPAGLTSHDVVGRVRRWLGIRRIGHTGTLDPDATGVLVLCVGKATRIAEYLSG 61
Query: 369 MIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y GV LG AT T D+ VI+R P E +R+AAA+ GEI Q PP FSA++
Sbjct: 62 EDKEYIGVLALGAATDTDDSSGEVIERMPSPSADPEALRRAAAALTGEILQRPPAFSAVR 121
Query: 429 V 429
V
Sbjct: 122 V 122
>gi|390454023|ref|ZP_10239551.1| tRNA pseudouridine synthase B [Paenibacillus peoriae KCTC 3763]
Length = 311
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 80/129 (62%), Gaps = 7/129 (5%)
Query: 303 TWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKL 362
+W+G ++ V KP G+TS V K RRL+ +K++GH GTLDP TG+L +C+G+AT++
Sbjct: 10 SWEG----ILPVLKPAGFTSHDVVAKARRLLGMKRIGHTGTLDPQVTGVLPLCLGRATRV 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQRE--PWEHIKDEDIRKAAASFRGEIWQV 420
V+ Q K Y RLG AT T D V + P E + +E+++ A F G I QV
Sbjct: 66 VEYMQERPKEYQATLRLGIATDTEDLTGTVTEESERPVE-VTEEEVKAALERFVGTILQV 124
Query: 421 PPMFSAIKV 429
PPM+SA+KV
Sbjct: 125 PPMYSALKV 133
>gi|359787083|ref|ZP_09290152.1| tRNA pseudouridine synthase B [Halomonas sp. GFAJ-1]
gi|359295620|gb|EHK59884.1| tRNA pseudouridine synthase B [Halomonas sp. GFAJ-1]
Length = 307
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 55/123 (44%), Positives = 75/123 (60%), Gaps = 1/123 (0%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P ++L++KPKG +S ++RRL + +K GH GTLDPMATGLL +C+G+ATK
Sbjct: 9 PVNGVLLLDKPKGISSNHALQRVRRLFEAQKAGHTGTLDPMATGLLPICLGEATKFSAHL 68
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQ-REPWEHIKDEDIRKAAASFRGEIWQVPPMFS 425
K Y LG T T DA+ VI+ RE + ++D+ FRGEI QVPPM+S
Sbjct: 69 LEADKMYRTRVELGVITDTGDAEGTVIERREVPSRLTEQDVEAVLTRFRGEIEQVPPMYS 128
Query: 426 AIK 428
A+K
Sbjct: 129 ALK 131
>gi|332879936|ref|ZP_08447621.1| tRNA pseudouridine synthase B [Capnocytophaga sp. oral taxon 329
str. F0087]
gi|332682147|gb|EGJ55059.1| tRNA pseudouridine synthase B [Capnocytophaga sp. oral taxon 329
str. F0087]
Length = 528
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 55/137 (40%), Positives = 82/137 (59%), Gaps = 11/137 (8%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR-------RLVKVKKVGHAGTLDPMATGLLIVCVGKATK 361
G ++L++KP W+SF K++ +L K+K +GHAGTLDP+A+GLL++C GK TK
Sbjct: 10 GKILLIDKPLQWSSFQAVNKIKWAILKHYKLKKIK-IGHAGTLDPLASGLLVICTGKYTK 68
Query: 362 LVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVP 421
+ Q K Y+G LG +T ++D ++ V P +HI I + F GE QVP
Sbjct: 69 KITEIQDAPKTYTGTITLGASTPSFDMETEVDALYPTDHITPALIEQVRQQFLGEQVQVP 128
Query: 422 PMFSAIK---VRVFHFS 435
P+FSAIK R++ F+
Sbjct: 129 PVFSAIKKDGKRLYEFA 145
>gi|385855427|ref|YP_005901940.1| tRNA pseudouridine synthase B [Neisseria meningitidis M01-240355]
gi|325204368|gb|ADY99821.1| tRNA pseudouridine synthase B [Neisseria meningitidis M01-240355]
Length = 306
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 74/122 (60%), Gaps = 1/122 (0%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P ++L++KP+G +S T K RRL + +K GH G LDP+ATGLL VC G+ATK
Sbjct: 9 PVNGVLLLDKPEGLSSNTALQKARRLFRAEKAGHTGVLDPLATGLLPVCFGEATKFAQYL 68
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
K Y+ +LGEA+ST DA+ ++ + I + + A + G+I QVPPMFSA
Sbjct: 69 LDADKAYTATLKLGEASSTGDAEGEIVATARAD-ISLAEFQTACQALTGDIRQVPPMFSA 127
Query: 427 IK 428
+K
Sbjct: 128 LK 129
>gi|399524101|ref|ZP_10764680.1| putative tRNA pseudouridine(55) synthase, partial [Atopobium sp.
ICM58]
gi|398374793|gb|EJN52333.1| putative tRNA pseudouridine(55) synthase, partial [Atopobium sp.
ICM58]
Length = 185
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 74/125 (59%)
Query: 305 DGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVD 364
D P +V+++KP G TS V ++RRL +KVGH GTLDPMATG+L++ +GKATKL+
Sbjct: 6 DNPRPGLVVIDKPAGMTSHDVVSRVRRLAHTRKVGHGGTLDPMATGVLVLGIGKATKLLT 65
Query: 365 RYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMF 424
G K Y R G +T+T DA+ + + + D+ A RG+I QVP
Sbjct: 66 WVSGHSKEYRATIRFGISTNTDDAEGVATAAKGCACLSEADLEAVLAPLRGDIMQVPTTV 125
Query: 425 SAIKV 429
SAIKV
Sbjct: 126 SAIKV 130
>gi|392411100|ref|YP_006447707.1| tRNA pseudouridine synthase B [Desulfomonile tiedjei DSM 6799]
gi|390624236|gb|AFM25443.1| tRNA pseudouridine synthase B [Desulfomonile tiedjei DSM 6799]
Length = 325
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 55/118 (46%), Positives = 74/118 (62%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++LV+KP+G TS V ++R VK KVGH+GTLDP ATGLL++ +G AT+ +D
Sbjct: 24 ILLVDKPEGITSNDVVRVIKRKVKPAKVGHSGTLDPAATGLLVILIGVATRTLDHLNETR 83
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y V +LGE T + D D VI+ H+ DI +A +RG I Q+PP FSAIK
Sbjct: 84 KCYHMVVKLGEETDSADKDGRVIRTSDPSHLTLNDIERALIPYRGVIDQIPPHFSAIK 141
>gi|294651726|ref|ZP_06729027.1| tRNA pseudouridine synthase B [Acinetobacter haemolyticus ATCC
19194]
gi|292822392|gb|EFF81294.1| tRNA pseudouridine synthase B [Acinetobacter haemolyticus ATCC
19194]
Length = 304
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 71/118 (60%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+ L+NKP G +S K+RRL +K GH G LDP+ATGLL +C+G+ATK
Sbjct: 19 VFLLNKPIGMSSNGALQKVRRLFNAQKAGHTGALDPLATGLLPICLGEATKFSHYLLDST 78
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y +LG+ T+T D + V+Q+ + E I + A FRG+I QVPPM+SA+K
Sbjct: 79 KRYQTTVKLGQTTTTGDIEGDVLQKRNVPLLTRESIEQVLAQFRGDIQQVPPMYSALK 136
>gi|241760078|ref|ZP_04758176.1| tRNA pseudouridine synthase B [Neisseria flavescens SK114]
gi|241319532|gb|EER55962.1| tRNA pseudouridine synthase B [Neisseria flavescens SK114]
Length = 304
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 74/122 (60%), Gaps = 1/122 (0%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P ++L++KP+G +S T K RRL + +K GH G LDP+ATGLL VC G+ATK
Sbjct: 9 PVNGVLLLDKPEGLSSNTALQKARRLFRAEKAGHTGVLDPLATGLLPVCFGEATKFAQYL 68
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
K Y+ +LGEA+ST DA+ ++ + I + + A + G+I QVPPMFSA
Sbjct: 69 IDADKAYTATLKLGEASSTGDAEGEIVATARAD-ISLSEFQTACQALTGDIRQVPPMFSA 127
Query: 427 IK 428
+K
Sbjct: 128 LK 129
>gi|453362030|dbj|GAC81983.1| tRNA pseudouridine synthase B [Gordonia malaquae NBRC 108250]
Length = 299
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 74/119 (62%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+K G TS V K R+ + +KVGHAGTLDPMATG+L++ V +ATKL+
Sbjct: 11 LLIVDKAAGMTSHDVVAKTRKAFQTRKVGHAGTLDPMATGVLVIGVERATKLLGLLSLTT 70
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ RLG++T+T DA+ V++ + DE I A+ G+I Q+P SAIKV
Sbjct: 71 KSYAATIRLGQSTNTDDAEGDVLESSDASGVTDEQIVAGVAALTGDILQIPAKVSAIKV 129
>gi|417885368|ref|ZP_12529522.1| tRNA pseudouridine synthase B [Lactobacillus oris F0423]
gi|341595290|gb|EGS37939.1| tRNA pseudouridine synthase B [Lactobacillus oris F0423]
Length = 299
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/124 (44%), Positives = 76/124 (61%), Gaps = 4/124 (3%)
Query: 316 KPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSG 375
K +G TSF +LRR++K +K+GH+GTLDP G+L +CVG ATK V+ K Y G
Sbjct: 9 KERGMTSFDCVSRLRRILKTRKIGHSGTLDPSVDGVLPICVGTATKAVEYLMQSGKVYQG 68
Query: 376 VFRLGEATSTWDADSPVIQREPWE-HIKDEDIRKAAASFRGEIWQVPPMFSAIKV---RV 431
+G AT T D D VI++ P + I DE + A GEI QVPPM+SA+KV R+
Sbjct: 69 ELVIGRATETEDFDGQVIEQAPVKAAISDEAVTAAMTKLTGEITQVPPMYSAVKVNGKRL 128
Query: 432 FHFS 435
+ ++
Sbjct: 129 YEYA 132
>gi|345874256|ref|ZP_08826070.1| hypothetical protein l11_01490 [Neisseria weaveri LMG 5135]
gi|417957820|ref|ZP_12600739.1| hypothetical protein l13_11480 [Neisseria weaveri ATCC 51223]
gi|343967884|gb|EGV36124.1| hypothetical protein l13_11480 [Neisseria weaveri ATCC 51223]
gi|343970529|gb|EGV38702.1| hypothetical protein l11_01490 [Neisseria weaveri LMG 5135]
Length = 301
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 72/118 (61%), Gaps = 1/118 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KPK +S T K RRL +K GH G LDP+ATGLL VC G+ATK
Sbjct: 10 VLLLDKPKNLSSNTALQKARRLYAAEKAGHTGVLDPLATGLLPVCFGEATKFAQYLLDAD 69
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y+ +LGEAT+T DA+ V++ + I E+ + A + G I QVPPMFSA+K
Sbjct: 70 KAYTATLKLGEATTTGDAEGEVVETARAD-ITAEEFQTACQALTGNIRQVPPMFSALK 126
>gi|153940367|ref|YP_001391713.1| tRNA pseudouridine synthase B [Clostridium botulinum F str.
Langeland]
gi|384462723|ref|YP_005675318.1| tRNA pseudouridine synthase B [Clostridium botulinum F str. 230613]
gi|189036463|sp|A7GG03.1|TRUB_CLOBL RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|152936263|gb|ABS41761.1| tRNA pseudouridine synthase B [Clostridium botulinum F str.
Langeland]
gi|295319740|gb|ADG00118.1| tRNA pseudouridine synthase B [Clostridium botulinum F str. 230613]
Length = 289
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/116 (44%), Positives = 76/116 (65%), Gaps = 1/116 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V KPKG TSF V +R++ K+KKVGH GTLDP+A+G+L +C+GKATK+VD K Y
Sbjct: 7 VLKPKGITSFDVVRDIRKIAKIKKVGHTGTLDPLASGVLPICIGKATKIVDYIMEGTKTY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
+LG T T+D + V++ E ++ ++ K + G+I QVPPM+SA+K+
Sbjct: 67 RVEMKLGTTTDTYDREGTVLE-EKEINLTPIEVEKTIKKYIGDIDQVPPMYSALKI 121
>gi|119512040|ref|ZP_01631135.1| tRNA pseudouridine synthase B [Nodularia spumigena CCY9414]
gi|119463330|gb|EAW44272.1| tRNA pseudouridine synthase B [Nodularia spumigena CCY9414]
Length = 290
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 76/116 (65%), Gaps = 1/116 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+NKP WTS ++R+L+++K+VGHAGTLDP ATG+L + +G+AT+L+ +Y K Y
Sbjct: 7 LNKPFDWTSHDCVARVRKLLRLKRVGHAGTLDPAATGVLPIALGRATRLL-QYLPETKAY 65
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
RLG T+T D +I +P + D++ A A F G+I Q+PP++SAI+V
Sbjct: 66 KATIRLGVQTTTDDLQGEIISSQPCPGLNFADVQTAIAQFNGKIEQIPPIYSAIQV 121
>gi|294782298|ref|ZP_06747624.1| tRNA pseudouridine synthase B [Fusobacterium sp. 1_1_41FAA]
gi|294480939|gb|EFG28714.1| tRNA pseudouridine synthase B [Fusobacterium sp. 1_1_41FAA]
Length = 287
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/128 (44%), Positives = 85/128 (66%), Gaps = 4/128 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++LVNKPKG +SF V KL++++K KK+GH GTLDP+ATGL+++CVGKATKL +
Sbjct: 4 IILVNKPKGISSFDVIRKLKKILKTKKIGHTGTLDPLATGLMLICVGKATKLASDLEAKN 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV- 429
K Y F +G AT T+D + I E I +++ + F G+I Q+PPM+SAIK+
Sbjct: 64 KVYLANFEIGYATDTYDIEGKRIA-ENLIDISKDNLELSLKKFIGDIKQIPPMYSAIKID 122
Query: 430 --RVFHFS 435
+++H +
Sbjct: 123 GNKLYHLA 130
>gi|259503130|ref|ZP_05746032.1| tRNA pseudouridine synthase B [Lactobacillus antri DSM 16041]
gi|259168996|gb|EEW53491.1| tRNA pseudouridine synthase B [Lactobacillus antri DSM 16041]
Length = 317
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 79/129 (61%), Gaps = 4/129 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K +G TSF +LRR++K +K+GH+GTLDP G+L +CVG ATK V+
Sbjct: 22 IIPLYKERGMTSFDCVSRLRRILKTRKIGHSGTLDPAVDGVLPICVGNATKAVEYLMQSG 81
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G +G AT T D D V+ + P + DE +R A A G+I QVPPM+SA+KV
Sbjct: 82 KIYQGELVIGRATETEDFDGRVVAQTPVPAPLSDEQVRAAMAKLTGKITQVPPMYSAVKV 141
Query: 430 ---RVFHFS 435
R++ ++
Sbjct: 142 NGKRLYEYA 150
>gi|170782211|ref|YP_001710544.1| tRNA pseudouridine synthase B [Clavibacter michiganensis subsp.
sepedonicus]
gi|169156780|emb|CAQ01943.1| tRNA pseudouridine synthase [Clavibacter michiganensis subsp.
sepedonicus]
Length = 319
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/132 (43%), Positives = 77/132 (58%), Gaps = 7/132 (5%)
Query: 301 PPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKAT 360
P T G ++L++K WTS + + RRL +KVGHAGTLDPMATGL+I+ V +T
Sbjct: 10 PSTASG----LLLIDKRGEWTSHDLVARTRRLAGTRKVGHAGTLDPMATGLMILGVNSST 65
Query: 361 KLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKD---EDIRKAAASFRGEI 417
+L+ G+ K Y RLG AT+T D + V+ R I+D D+ +A A RG I
Sbjct: 66 RLLTYLVGLDKEYLATIRLGRATTTDDREGEVVSRAEPGRIRDLAVADVERAIADLRGTI 125
Query: 418 WQVPPMFSAIKV 429
QVP SAIKV
Sbjct: 126 SQVPSAVSAIKV 137
>gi|297242935|ref|ZP_06926873.1| tRNA pseudouridine synthase B [Gardnerella vaginalis AMD]
gi|415709540|ref|ZP_11463165.1| tRNA pseudouridine synthase B [Gardnerella vaginalis 6420B]
gi|296889146|gb|EFH27880.1| tRNA pseudouridine synthase B [Gardnerella vaginalis AMD]
gi|388056212|gb|EIK79088.1| tRNA pseudouridine synthase B [Gardnerella vaginalis 6420B]
Length = 367
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 81/140 (57%), Gaps = 17/140 (12%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P ++LV+KP+G TS + R L+ K+VGHAGTLDPMATGLLI+ G AT+L++
Sbjct: 4 PDSGLLLVDKPQGVTSHDIVACARHLLHTKRVGHAGTLDPMATGLLIIGFGNATRLLNYM 63
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQRE-----PWEHIKDEDI------------RKA 409
G K Y V RLGEAT+T DA+ ++ + P H+ ++D+ +
Sbjct: 64 LGHNKTYEAVIRLGEATTTDDAEGEILPNDALNIGPGVHVANKDMSFEKSLSFERIKQVV 123
Query: 410 AASFRGEIWQVPPMFSAIKV 429
+ + G+I Q P FSAIK+
Sbjct: 124 SENLVGKIMQAPTAFSAIKI 143
>gi|254510700|ref|ZP_05122767.1| tRNA pseudouridine synthase B [Rhodobacteraceae bacterium KLH11]
gi|221534411|gb|EEE37399.1| tRNA pseudouridine synthase B [Rhodobacteraceae bacterium KLH11]
Length = 301
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/118 (47%), Positives = 77/118 (65%), Gaps = 1/118 (0%)
Query: 312 VLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIK 371
++V+KP G TS + K+R + +K GHAGTLDP ATG+L V +G+ATK V +K
Sbjct: 14 LVVDKPAGMTSTALVNKVRWAMDARKAGHAGTLDPEATGVLAVALGEATKTVPYITDALK 73
Query: 372 GYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
Y+ RLG+AT+T DA+ VI + DEDI++A A F G+I QVPP FSA+K+
Sbjct: 74 AYTFTVRLGQATNTDDAEGEVIAQSA-ARPSDEDIKQALAPFLGDIMQVPPKFSAVKI 130
>gi|422339509|ref|ZP_16420467.1| tRNA pseudouridine synthase B [Fusobacterium nucleatum subsp.
polymorphum F0401]
gi|355370939|gb|EHG18314.1| tRNA pseudouridine synthase B [Fusobacterium nucleatum subsp.
polymorphum F0401]
Length = 287
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/128 (45%), Positives = 85/128 (66%), Gaps = 4/128 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++VNKPKG TSF V KL++++K KK+GH GTLDP+ATG++++CVGKATKL +
Sbjct: 4 IIVVNKPKGITSFDVIRKLKKILKTKKIGHTGTLDPLATGVMLMCVGKATKLASDLEAKD 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV- 429
K Y F +G AT T+D + I E I E++ ++ F G I QVPPM+SAIK+
Sbjct: 64 KVYIADFDIGYATDTYDIEGKKIAENIIE-ISKENLEQSIKKFIGNIKQVPPMYSAIKID 122
Query: 430 --RVFHFS 435
+++H +
Sbjct: 123 GNKLYHLA 130
>gi|218904937|ref|YP_002452771.1| tRNA pseudouridine synthase B [Bacillus cereus AH820]
gi|228916447|ref|ZP_04080013.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228928858|ref|ZP_04091890.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228935124|ref|ZP_04097951.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228947529|ref|ZP_04109819.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|229123323|ref|ZP_04252527.1| tRNA pseudouridine synthase B [Bacillus cereus 95/8201]
gi|423550441|ref|ZP_17526768.1| tRNA pseudouridine synthase B [Bacillus cereus ISP3191]
gi|218534932|gb|ACK87330.1| tRNA pseudouridine synthase B [Bacillus cereus AH820]
gi|228660099|gb|EEL15735.1| tRNA pseudouridine synthase B [Bacillus cereus 95/8201]
gi|228812049|gb|EEM58380.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228824489|gb|EEM70294.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228830665|gb|EEM76270.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228843026|gb|EEM88108.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|401190057|gb|EJQ97107.1| tRNA pseudouridine synthase B [Bacillus cereus ISP3191]
Length = 307
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 78/120 (65%), Gaps = 1/120 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + + I +++ +A A+ G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETKHVDRVITRKEVEEALATLTGTIEQMPPMFSAVKV 123
>gi|405356585|ref|ZP_11025554.1| tRNA pseudouridine synthase B [Chondromyces apiculatus DSM 436]
gi|397090629|gb|EJJ21484.1| tRNA pseudouridine synthase B [Myxococcus sp. (contaminant ex DSM
436)]
Length = 289
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 74/119 (62%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++++KP G TSF V ++R L+++KKVGH GTLDP+ATG+L +C+G+ATK+
Sbjct: 4 VLVIDKPSGPTSFDVVRQVRSLLRIKKVGHTGTLDPLATGVLPLCLGEATKVAGFITEGD 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y RLG T T DA+ V P + I A A +RG Q+PPM+SA+KV
Sbjct: 64 KAYDATVRLGSETDTLDAEGQVTAHAPVPALTPALIEAALARYRGTYDQIPPMYSAVKV 122
>gi|260905187|ref|ZP_05913509.1| tRNA pseudouridine synthase B [Brevibacterium linens BL2]
Length = 305
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/122 (45%), Positives = 76/122 (62%), Gaps = 3/122 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++ +KP+G TS V ++RR +KVGHAGTLDPMATG+L++ +G+ TKL+ G+
Sbjct: 9 VIVCDKPQGLTSHGVVSRIRRWYGTRKVGHAGTLDPMATGVLVLGLGRGTKLLGYITGVS 68
Query: 371 KGYSGVFRLGEATSTWDADS-PVIQREP--WEHIKDEDIRKAAASFRGEIWQVPPMFSAI 427
K Y RLG AT T DADS P + EP + D+ I ++ RG I QVP SAI
Sbjct: 69 KTYLATIRLGSATPTDDADSEPDLFAEPAALSAVTDDGIAHGVSALRGSIDQVPSAVSAI 128
Query: 428 KV 429
KV
Sbjct: 129 KV 130
>gi|340752850|ref|ZP_08689644.1| tRNA pseudouridine synthase B [Fusobacterium sp. 2_1_31]
gi|229422643|gb|EEO37690.1| tRNA pseudouridine synthase B [Fusobacterium sp. 2_1_31]
Length = 287
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/128 (45%), Positives = 85/128 (66%), Gaps = 4/128 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++LVNKPKG +SF V KL++++K KK+GH GTLDP+ATGL+++CVGKATKL +
Sbjct: 4 IILVNKPKGISSFDVIRKLKKILKTKKIGHTGTLDPLATGLMLICVGKATKLASDLEAKN 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV- 429
K Y F +G AT T+D + I E I +++ + F G+I QVPPM+SAIK+
Sbjct: 64 KVYLADFEIGYATDTYDIEGKRIA-ENLIDISKDNLELSLKKFIGDIKQVPPMYSAIKID 122
Query: 430 --RVFHFS 435
+++H +
Sbjct: 123 GNKLYHLA 130
>gi|226953789|ref|ZP_03824253.1| tRNA pseudouridine 55 synthase [Acinetobacter sp. ATCC 27244]
gi|226835460|gb|EEH67843.1| tRNA pseudouridine 55 synthase [Acinetobacter sp. ATCC 27244]
Length = 297
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 71/118 (60%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+ L+NKP G +S K+RRL +K GH G LDP+ATGLL +C+G+ATK
Sbjct: 12 VFLLNKPIGMSSNGALQKVRRLFNAQKAGHTGALDPLATGLLPICLGEATKFSHYLLDST 71
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y +LG+ T+T D + ++Q+ + E I + A FRG+I QVPPM+SA+K
Sbjct: 72 KRYQTTVKLGQTTTTGDIEGDILQKRNVPLLTRESIEQVLAQFRGDIQQVPPMYSALK 129
>gi|167752309|ref|ZP_02424436.1| hypothetical protein ALIPUT_00553 [Alistipes putredinis DSM 17216]
gi|167660550|gb|EDS04680.1| tRNA pseudouridine synthase B [Alistipes putredinis DSM 17216]
Length = 240
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 76/126 (60%), Gaps = 5/126 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK-----KVGHAGTLDPMATGLLIVCVGKATKLV 363
G + +++KP WTS V K++ ++ KVGHAGTLDP+ATG+L+VC+GKATK+
Sbjct: 17 GYIAVIDKPLEWTSSDVVRKIKFALRRAGYPKIKVGHAGTLDPLATGILLVCIGKATKMA 76
Query: 364 DRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPM 423
D Q K Y LG T ++D + P+ + P+EHI E + + S GE Q PP+
Sbjct: 77 DALQAEEKEYVADLMLGATTPSFDLEHPIDRTYPFEHITREAVEEVLRSLTGERLQTPPL 136
Query: 424 FSAIKV 429
+SA KV
Sbjct: 137 YSAKKV 142
>gi|94268660|ref|ZP_01291249.1| tRNA pseudouridine synthase B [delta proteobacterium MLMS-1]
gi|93451515|gb|EAT02338.1| tRNA pseudouridine synthase B [delta proteobacterium MLMS-1]
Length = 259
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 76/119 (63%), Gaps = 1/119 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGK-ATKLVDRYQGM 369
++ ++KP G +SF + +RR + +KKVGHAGTLDP A+GLL+VCVG+ AT+LV+R
Sbjct: 13 VIPLDKPVGPSSFRLVQLVRRALGIKKVGHAGTLDPFASGLLLVCVGRGATRLVERLMAG 72
Query: 370 IKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y +LG AT T D + V E H + +++ FRGEI QVPP FSA+K
Sbjct: 73 DKEYLATLQLGVATDTHDREGQVTATEEVTHEQLLRLQEVLFRFRGEILQVPPAFSAVK 131
>gi|147669514|ref|YP_001214332.1| tRNA pseudouridine synthase B [Dehalococcoides sp. BAV1]
gi|189036470|sp|A5FQR4.1|TRUB_DEHSB RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|146270462|gb|ABQ17454.1| tRNA pseudouridine synthase B [Dehalococcoides sp. BAV1]
Length = 300
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 75/117 (64%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+NKP G TSF V K+RR+ K+VGH GTLDP ATG++ V +GK+T+L++ + K Y
Sbjct: 7 INKPFGITSFDVVAKVRRIYSQKRVGHGGTLDPYATGVIPVFLGKSTRLIEYLSSVSKTY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVR 430
LG T ++D++ + R+ +++ E I K F+GEI Q+PPM+SA+K R
Sbjct: 67 LAEIELGVETDSYDSEGEITFRKTCDYVTREMIYKTLMDFQGEIIQIPPMYSAVKHR 123
>gi|262067682|ref|ZP_06027294.1| tRNA pseudouridine synthase B [Fusobacterium periodonticum ATCC
33693]
gi|291378407|gb|EFE85925.1| tRNA pseudouridine synthase B [Fusobacterium periodonticum ATCC
33693]
Length = 287
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/128 (45%), Positives = 85/128 (66%), Gaps = 4/128 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++LVNKPKG +SF V KL++++K KK+GH GTLDP+ATGL+++CVGKATKL +
Sbjct: 4 IILVNKPKGISSFDVIRKLKKILKTKKIGHTGTLDPLATGLMLICVGKATKLASDLEAKN 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV- 429
K Y F +G AT T+D + I + KD ++ + F G+I QVPPM+SAIK+
Sbjct: 64 KVYLANFEIGYATDTYDIEGKRIAENLIDVSKD-NLELSLKKFIGDIKQVPPMYSAIKID 122
Query: 430 --RVFHFS 435
+++H +
Sbjct: 123 GNKLYHLA 130
>gi|19703970|ref|NP_603532.1| tRNA pseudouridine synthase B [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gi|37089050|sp|Q8R5X8.1|TRUB_FUSNN RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|19714151|gb|AAL94831.1| tRNA pseudouridine synthase B [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
Length = 287
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 83/128 (64%), Gaps = 4/128 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++++NKPKG TSF V KL++ +K KK+GH GTLDP+A G+++VCVGKATKL +
Sbjct: 4 IIVINKPKGITSFDVIRKLKKFLKTKKIGHTGTLDPLAIGVMLVCVGKATKLASDLEAKD 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV- 429
K Y F +G AT T+D + I E + E++ ++ F G I QVPPM+SAIK+
Sbjct: 64 KVYIADFDIGYATDTYDIEGKKIAENIIE-VSKENLEQSLKKFIGNIKQVPPMYSAIKID 122
Query: 430 --RVFHFS 435
+++H +
Sbjct: 123 GNKLYHLA 130
>gi|85818604|gb|EAQ39764.1| tRNA pseudouridine synthase B [Dokdonia donghaensis MED134]
Length = 241
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/126 (44%), Positives = 82/126 (65%), Gaps = 6/126 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR------RLVKVKKVGHAGTLDPMATGLLIVCVGKATKL 362
G +++ +KP WTSF + K+R R +K KVGHAGTLDP+ATGL+I+C GK TK
Sbjct: 15 GQVLIFDKPLEWTSFQLVNKVRWLIRKNRNIKKIKVGHAGTLDPLATGLMIICTGKFTKR 74
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+ + G K Y+G LG T ++D ++ + + P EHI +EDI A +++G+I Q PP
Sbjct: 75 LHEFMGQEKEYTGTITLGGTTPSYDLETAIDKEYPTEHITEEDIYAFAKAYQGKIMQRPP 134
Query: 423 MFSAIK 428
+FSA+K
Sbjct: 135 VFSALK 140
>gi|294671350|ref|ZP_06736201.1| hypothetical protein NEIELOOT_03059 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291306982|gb|EFE48225.1| hypothetical protein NEIELOOT_03059 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 304
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 73/122 (59%), Gaps = 1/122 (0%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P ++L++KP+G +S T K RRL +K GH G LDP+ATGLL VC G+ATK
Sbjct: 9 PVNGVLLLDKPEGLSSNTALQKARRLYNAEKAGHTGVLDPLATGLLPVCFGEATKFAQYL 68
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
K Y+ +LGEA+ST DA+ +I + I + + A + G+I QVPPMFSA
Sbjct: 69 LDADKAYTATLKLGEASSTGDAEGEIIATARAD-ISLAEFQTACQALTGDIRQVPPMFSA 127
Query: 427 IK 428
+K
Sbjct: 128 LK 129
>gi|379057944|ref|ZP_09848470.1| tRNA pseudouridine synthase B [Serinicoccus profundi MCCC 1A05965]
Length = 309
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/134 (42%), Positives = 77/134 (57%), Gaps = 5/134 (3%)
Query: 297 STELPP-TWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVC 355
+T PP DG +++V+KP GWTS V + R L +KVGHAGTLDPMATG+L++
Sbjct: 5 TTHRPPFVGDG----LLVVDKPAGWTSHDVVARARWLCGTRKVGHAGTLDPMATGVLVLG 60
Query: 356 VGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRG 415
VG+ TKL+ G K Y+ RLG++T T DA+ V + +R A G
Sbjct: 61 VGRGTKLLTFLVGRDKAYTATIRLGQSTLTDDAEGEVTASSDASGVSGAQLRAAVHELTG 120
Query: 416 EIWQVPPMFSAIKV 429
++ QVP SAIKV
Sbjct: 121 DLQQVPSAVSAIKV 134
>gi|320533277|ref|ZP_08033979.1| tRNA pseudouridine synthase B [Actinomyces sp. oral taxon 171 str.
F0337]
gi|320134503|gb|EFW26749.1| tRNA pseudouridine synthase B [Actinomyces sp. oral taxon 171 str.
F0337]
Length = 338
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 74/121 (61%), Gaps = 2/121 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+KP+G TS V G RRL +KVGHAGTLDPMATGLL++ +G+AT+ + G
Sbjct: 8 ILVVDKPQGLTSHDVVGATRRLAATRKVGHAGTLDPMATGLLLLGIGRATRFLTYLVGAG 67
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPW--EHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y RLG T+T DAD + E + ++ + +A S G I QVP + SAIK
Sbjct: 68 KTYEATVRLGVETTTEDADGEITAARGCRIEDLPEDRLEEALTSLTGRIQQVPSVVSAIK 127
Query: 429 V 429
V
Sbjct: 128 V 128
>gi|227504834|ref|ZP_03934883.1| tRNA pseudouridine synthase B [Corynebacterium striatum ATCC 6940]
gi|227198525|gb|EEI78573.1| tRNA pseudouridine synthase B [Corynebacterium striatum ATCC 6940]
Length = 310
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 72/119 (60%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP+G TS V G+LRR+ +KVGHAGTLDPMATG+L+V + + TK +
Sbjct: 23 LVVVDKPQGMTSHDVVGRLRRIFHTRKVGHAGTLDPMATGVLVVGLERGTKFLAHMVAST 82
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ RLG AT T DA+ EP + E + K A+ G+I Q P SAIK+
Sbjct: 83 KSYAATIRLGMATHTDDAEGERTWGEPASELDMEQVNKEVAALTGDIMQRPAAVSAIKI 141
>gi|374323515|ref|YP_005076644.1| tRNA pseudouridine synthase b [Paenibacillus terrae HPL-003]
gi|357202524|gb|AET60421.1| tRNA pseudouridine synthase b [Paenibacillus terrae HPL-003]
Length = 311
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 80/129 (62%), Gaps = 7/129 (5%)
Query: 303 TWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKL 362
TW+G ++ V KP G+TS V K RRL+ +K++GH GTLDP TG+L +C+G+AT++
Sbjct: 10 TWEG----VLPVYKPAGFTSHDVVAKARRLLGMKRIGHTGTLDPQVTGVLPLCLGRATRV 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQR--EPWEHIKDEDIRKAAASFRGEIWQV 420
V+ Q + K Y RLG AT T D + ++ P E + +E+ + F G I QV
Sbjct: 66 VEYMQELPKEYHATLRLGLATDTEDLTGTITEKCDHPVE-VTEEEAKAVLERFVGTISQV 124
Query: 421 PPMFSAIKV 429
PPM+SA+KV
Sbjct: 125 PPMYSALKV 133
>gi|291302565|ref|YP_003513843.1| tRNA pseudouridine synthase B [Stackebrandtia nassauensis DSM
44728]
gi|290571785|gb|ADD44750.1| tRNA pseudouridine synthase B [Stackebrandtia nassauensis DSM
44728]
Length = 310
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/118 (47%), Positives = 71/118 (60%)
Query: 312 VLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIK 371
V+V+KP TS V ++RRL K +KVGH GTLDPMATG+L++ VG+ T+L+ G K
Sbjct: 23 VVVDKPPAMTSHDVVARMRRLAKTRKVGHGGTLDPMATGVLVLAVGRITRLLTYVTGCDK 82
Query: 372 GYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
Y RLG+AT T DA+ V + + DI A RGEI QVP SAIKV
Sbjct: 83 AYQATIRLGQATVTDDAEGEVTATADTAAVTEADIYAALEPMRGEIEQVPSAVSAIKV 140
>gi|376316349|emb|CCF99743.1| tRNA pseudouridine synthase B [uncultured Dokdonia sp.]
Length = 241
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/126 (44%), Positives = 82/126 (65%), Gaps = 6/126 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR------RLVKVKKVGHAGTLDPMATGLLIVCVGKATKL 362
G +++ +KP WTSF + K+R R +K KVGHAGTLDP+ATGL+I+C GK TK
Sbjct: 15 GQVLIFDKPLEWTSFQLVNKVRWLIRKNRNIKKIKVGHAGTLDPLATGLMIICTGKFTKR 74
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+ + G K Y+G LG T ++D ++ + + P EHI +EDI A +++G+I Q PP
Sbjct: 75 LHEFMGQEKEYTGTITLGGTTPSYDLETAIDKEYPTEHITEEDIYAFAKAYQGKIMQRPP 134
Query: 423 MFSAIK 428
+FSA+K
Sbjct: 135 VFSALK 140
>gi|419971105|ref|ZP_14486572.1| tRNA pseudouridine(55) synthase [Porphyromonas gingivalis W50]
gi|392609445|gb|EIW92254.1| tRNA pseudouridine(55) synthase [Porphyromonas gingivalis W50]
Length = 258
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 76/127 (59%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ +KP WTSF + K R R + +KK VGHAGTLDP+A+G++I+C G+ATK
Sbjct: 13 GEVLYFDKPLTWTSFDLVNKFRYRACRRMGIKKLRVGHAGTLDPLASGVMILCTGRATKQ 72
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+D Q K Y RLG T ++D ++ P+EHI + I F G I QVPP
Sbjct: 73 IDVLQAGTKEYIAAIRLGATTPSFDKETEPDAFFPYEHITRQSILDILPRFTGTIEQVPP 132
Query: 423 MFSAIKV 429
+FSA++V
Sbjct: 133 IFSAVRV 139
>gi|329944620|ref|ZP_08292760.1| tRNA pseudouridine synthase B [Actinomyces sp. oral taxon 170 str.
F0386]
gi|328530173|gb|EGF57056.1| tRNA pseudouridine synthase B [Actinomyces sp. oral taxon 170 str.
F0386]
Length = 373
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 78/130 (60%), Gaps = 6/130 (4%)
Query: 302 PTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATK 361
P DG ++LV+K +G TS V G RRL +KVGHAGTLDPMATGLL++ +G+AT+
Sbjct: 25 PASDG----ILLVDKSQGLTSHDVVGATRRLAATRKVGHAGTLDPMATGLLLLGIGRATR 80
Query: 362 LVDRYQGMIKGYSGVFRLGEATSTWDADSPV--IQREPWEHIKDEDIRKAAASFRGEIWQ 419
+ G K Y+ RLG T+T DA+ V + + + + ++KA A G+I Q
Sbjct: 81 FLTYLVGADKTYAATIRLGLETTTEDAEGEVTAVHGCRIDDLSGDRLQKALAGLTGQIQQ 140
Query: 420 VPPMFSAIKV 429
VP SAIKV
Sbjct: 141 VPSAVSAIKV 150
>gi|433445985|ref|ZP_20410116.1| tRNA pseudouridine synthase B [Anoxybacillus flavithermus
TNO-09.006]
gi|432000730|gb|ELK21622.1| tRNA pseudouridine synthase B [Anoxybacillus flavithermus
TNO-09.006]
Length = 298
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 73/120 (60%), Gaps = 1/120 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP G TS ++R+L + KKVGH GTLDP G+L +C+GKATK+V+
Sbjct: 4 VLLLHKPAGMTSHDCVMRIRKLFQTKKVGHTGTLDPDVRGVLPICIGKATKIVELLTAEK 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG AT+T DA V+ +P E I +I A GEI Q PPM+SA+KV
Sbjct: 64 KTYEGEVTLGIATTTEDASGDVVSIKPIERSIARHEIEHVLAKLTGEIEQTPPMYSAVKV 123
>gi|409124293|ref|ZP_11223688.1| tRNA pseudouridine synthase B [Gillisia sp. CBA3202]
Length = 233
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 81/126 (64%), Gaps = 6/126 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLV------KVKKVGHAGTLDPMATGLLIVCVGKATKL 362
G ++L +KP GWTSF V K+R L+ K KVGHAGTLDP+A+GLLI+C GK TK
Sbjct: 14 GQILLFDKPLGWTSFQVVNKVRWLIRKSCGIKKIKVGHAGTLDPLASGLLIICTGKFTKR 73
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ QG K Y+G F LG T ++D ++ + + HI + I +A +F GEI Q PP
Sbjct: 74 IEELQGQEKEYTGTFTLGGTTPSYDLETEIDETFETSHISEAAIHEATKNFLGEISQFPP 133
Query: 423 MFSAIK 428
+FSA+K
Sbjct: 134 VFSALK 139
>gi|269795637|ref|YP_003315092.1| tRNA pseudouridine synthase B [Sanguibacter keddieii DSM 10542]
gi|269097822|gb|ACZ22258.1| tRNA pseudouridine synthase B [Sanguibacter keddieii DSM 10542]
Length = 343
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 74/119 (62%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VLV+KP GWTS V + R L +KVGHAGTLDPMATG+L++ VG+AT+L+ G
Sbjct: 29 LVLVDKPAGWTSHDVVARTRGLAGTRKVGHAGTLDPMATGVLVLGVGRATRLLTYVVGTD 88
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ RLG+AT+T DA+ ++ + + + A GEI QVP SAIKV
Sbjct: 89 KEYTATIRLGQATTTDDAEGEMLTTPGAAGVAADAVAAGIARLTGEIQQVPSSVSAIKV 147
>gi|196229764|ref|ZP_03128628.1| tRNA pseudouridine synthase B [Chthoniobacter flavus Ellin428]
gi|196226090|gb|EDY20596.1| tRNA pseudouridine synthase B [Chthoniobacter flavus Ellin428]
Length = 239
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 70/118 (59%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++LV+K G TS V +RR + KKVGH GTLDP+ATGLLI+ +G+ TK+ D
Sbjct: 9 VLLVDKAPGMTSHDVVAIVRRRLNTKKVGHCGTLDPLATGLLIIVLGRGTKIQDLLMAED 68
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y G LG T + DAD V++ +P E I A F+G+ +Q PPM SAIK
Sbjct: 69 KEYVGTMTLGVTTDSQDADGQVVETKPVPDFPREQIDAAFGKFQGDFYQTPPMVSAIK 126
>gi|297621091|ref|YP_003709228.1| tRNA pseudouridine synthase B [Waddlia chondrophila WSU 86-1044]
gi|297376392|gb|ADI38222.1| tRNA pseudouridine synthase B [Waddlia chondrophila WSU 86-1044]
Length = 253
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/117 (46%), Positives = 74/117 (63%), Gaps = 2/117 (1%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKA-TKLVDRYQGMIKG 372
+NKP G T+FT+ KLRRL+ VKK+GHAGTLDP ATG++++ +G+ TK D G K
Sbjct: 24 INKPVGITAFTLVRKLRRLLGVKKIGHAGTLDPFATGVMVMLIGRNYTKFSDHLMGQEKE 83
Query: 373 YSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
Y G LG T T+D+D +Q E+I A + F+G I Q+PPM+SA K+
Sbjct: 84 YVGRVHLGIVTDTYDSDGVKLQTHSLIP-SIEEISSALSHFQGVIEQIPPMYSAKKI 139
>gi|218235132|ref|YP_002368611.1| tRNA pseudouridine synthase B [Bacillus cereus B4264]
gi|229152009|ref|ZP_04280204.1| tRNA pseudouridine synthase B [Bacillus cereus m1550]
gi|218163089|gb|ACK63081.1| tRNA pseudouridine synthase B [Bacillus cereus B4264]
gi|228631358|gb|EEK87992.1| tRNA pseudouridine synthase B [Bacillus cereus m1550]
Length = 307
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/120 (44%), Positives = 76/120 (63%), Gaps = 1/120 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + + I ++ KA A G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETKNVDRTITRMEVEKALAELTGTIEQMPPMFSAVKV 123
>gi|335050642|ref|ZP_08543599.1| tRNA pseudouridine synthase B [Propionibacterium sp. 409-HC1]
gi|342211674|ref|ZP_08704399.1| tRNA pseudouridine synthase B [Propionibacterium sp. CC003-HC2]
gi|419421634|ref|ZP_13961862.1| tRNA pseudouridine synthase B [Propionibacterium acnes PRP-38]
gi|422395398|ref|ZP_16475438.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL097PA1]
gi|422495190|ref|ZP_16571479.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL025PA1]
gi|313813340|gb|EFS51054.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL025PA1]
gi|327334269|gb|EGE75983.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL097PA1]
gi|333769278|gb|EGL46413.1| tRNA pseudouridine synthase B [Propionibacterium sp. 409-HC1]
gi|340767218|gb|EGR89743.1| tRNA pseudouridine synthase B [Propionibacterium sp. CC003-HC2]
gi|379978125|gb|EIA11450.1| tRNA pseudouridine synthase B [Propionibacterium acnes PRP-38]
Length = 295
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 72/119 (60%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+KP G TS V G++RRL+ +KVGHAGTLDPMA+G+L+V V +AT+L+
Sbjct: 8 VLVVDKPAGVTSHQVVGRVRRLMGTRKVGHAGTLDPMASGVLVVGVNRATRLLGHLSLHD 67
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ RLG T T DA+ V I D I A A GEI QVP SAIKV
Sbjct: 68 KDYTATVRLGVGTVTDDAEGDVTVTTDASAIDDRAIHAAMARQTGEIQQVPAAVSAIKV 126
>gi|434400161|ref|YP_007134165.1| tRNA pseudouridine synthase B [Stanieria cyanosphaera PCC 7437]
gi|428271258|gb|AFZ37199.1| tRNA pseudouridine synthase B [Stanieria cyanosphaera PCC 7437]
Length = 309
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/115 (46%), Positives = 73/115 (63%), Gaps = 1/115 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+NKP G+TS K+RRL+K KK+GH GTLDP ATG+L + VGKAT+L+ ++ K Y
Sbjct: 9 LNKPAGFTSHDCVAKMRRLLKTKKIGHGGTLDPSATGVLPIAVGKATRLL-QFLPEPKAY 67
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
RLG T+T D + +I + + +K E+I+ G I QVPPM+SAIK
Sbjct: 68 RARIRLGVTTTTDDLEGEIISSQTVQDLKLENIKTYLNKLTGTIEQVPPMYSAIK 122
>gi|226366099|ref|YP_002783882.1| tRNA pseudouridine synthase B [Rhodococcus opacus B4]
gi|226244589|dbj|BAH54937.1| tRNA pseudouridine synthase TruB [Rhodococcus opacus B4]
Length = 305
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 75/119 (63%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+K G TS V + R+L+ +KVGHAGTLDPMATG+L++ V +ATKL+
Sbjct: 16 LLIVDKDAGVTSHDVVARCRKLLGTRKVGHAGTLDPMATGVLVLGVERATKLLGLLALTT 75
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ RLG+AT+T DA+ ++ ++DE+I + G+I Q+P SAIKV
Sbjct: 76 KAYTATIRLGQATTTDDAEGEIVASADASGVRDEEIAAQVRTLTGDIQQIPSSVSAIKV 134
>gi|421527016|ref|ZP_15973621.1| tRNA pseudouridine synthase B [Fusobacterium nucleatum ChDC F128]
gi|402256745|gb|EJU07222.1| tRNA pseudouridine synthase B [Fusobacterium nucleatum ChDC F128]
Length = 287
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/128 (44%), Positives = 85/128 (66%), Gaps = 4/128 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++++NKPKG TSF V KL++++K KK+GH GTLDP+ATG++++CVGKATKL +
Sbjct: 4 IIVINKPKGITSFDVIRKLKKILKTKKIGHTGTLDPLATGVMLMCVGKATKLASDLEAKD 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV- 429
K Y F +G AT T+D + I E I E++ ++ F G I QVPPM+SAIK+
Sbjct: 64 KVYIADFDIGYATDTYDIEGKKIAENIIE-ISKENLEQSIKKFIGNIKQVPPMYSAIKID 122
Query: 430 --RVFHFS 435
+++H +
Sbjct: 123 GNKLYHLA 130
>gi|349573588|ref|ZP_08885566.1| tRNA pseudouridine synthase B [Neisseria shayeganii 871]
gi|348014894|gb|EGY53760.1| tRNA pseudouridine synthase B [Neisseria shayeganii 871]
Length = 299
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 72/122 (59%), Gaps = 1/122 (0%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P ++L++KP+G +S T + RRL + K GH G LDP+ATGLL VC G+ATK
Sbjct: 7 PLNGVLLLDKPQGVSSNTALQQARRLYRAAKAGHTGVLDPLATGLLPVCFGEATKFAQYL 66
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
K Y+ +LGEAT+T DA+ ++ + + + A A F G I QVPPMFSA
Sbjct: 67 LDADKAYTATLKLGEATTTGDAEGDIVAHT-ERAVSLPEFQAACAHFTGPIRQVPPMFSA 125
Query: 427 IK 428
+K
Sbjct: 126 LK 127
>gi|422349685|ref|ZP_16430574.1| tRNA pseudouridine synthase B [Sutterella wadsworthensis
2_1_59BFAA]
gi|404657894|gb|EKB30774.1| tRNA pseudouridine synthase B [Sutterella wadsworthensis
2_1_59BFAA]
Length = 297
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/123 (45%), Positives = 78/123 (63%), Gaps = 1/123 (0%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P ++L++KP G +S +RRLV +K GH GTLDPMATGLL +C G ATK
Sbjct: 7 PIDGVMLLDKPLGMSSNAALQTVRRLVNAQKAGHTGTLDPMATGLLPLCFGNATKFSADL 66
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
KGY +LGE +ST DA+ +++R P + + E + +A A+F GEI Q+PPM+SA
Sbjct: 67 LHAEKGYVARVKLGEVSSTGDAEGEIVERHPVD-VTAEALEEAVAAFLGEIVQIPPMYSA 125
Query: 427 IKV 429
+KV
Sbjct: 126 LKV 128
>gi|414582323|ref|ZP_11439463.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 5S-1215]
gi|420877967|ref|ZP_15341334.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 5S-0304]
gi|420884312|ref|ZP_15347672.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 5S-0421]
gi|420889633|ref|ZP_15352981.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 5S-0422]
gi|420897444|ref|ZP_15360783.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 5S-0708]
gi|420899440|ref|ZP_15362772.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 5S-0817]
gi|420906443|ref|ZP_15369761.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 5S-1212]
gi|420972847|ref|ZP_15436040.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 5S-0921]
gi|392080075|gb|EIU05901.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 5S-0421]
gi|392082876|gb|EIU08701.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 5S-0304]
gi|392087381|gb|EIU13203.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 5S-0422]
gi|392096756|gb|EIU22551.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 5S-0708]
gi|392100787|gb|EIU26578.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 5S-0817]
gi|392104347|gb|EIU30133.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 5S-1212]
gi|392117475|gb|EIU43243.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 5S-1215]
gi|392165739|gb|EIU91425.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 5S-0921]
Length = 280
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/110 (45%), Positives = 68/110 (61%)
Query: 320 WTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRL 379
TS V + RR+ +KVGHAGTLDPMATG+L++ + +ATK++ K Y+ R
Sbjct: 1 MTSHDVVSRCRRIFSTRKVGHAGTLDPMATGVLVIGIERATKIMGLLTLTTKSYAATIRF 60
Query: 380 GEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
G++TST DA+ V+Q H+ + DI A A RG+I QVP SAIKV
Sbjct: 61 GQSTSTDDAEGEVLQTISASHLTEADIEAAVAGLRGDIAQVPSSVSAIKV 110
>gi|149371948|ref|ZP_01891267.1| pseudouridylate synthase (pseudouridine synthase) [unidentified
eubacterium SCB49]
gi|149355088|gb|EDM43649.1| pseudouridylate synthase (pseudouridine synthase) [unidentified
eubacterium SCB49]
Length = 235
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/126 (43%), Positives = 76/126 (60%), Gaps = 6/126 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVKK------VGHAGTLDPMATGLLIVCVGKATKL 362
G ++L++KP WTSF V K+R L+K + VGHAGTLDP+ATGLLI+C GK TK
Sbjct: 13 GQVILIDKPLNWTSFQVVNKVRWLIKQQFKIKKIKVGHAGTLDPLATGLLILCTGKFTKQ 72
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ YQ K Y+G LG T ++D ++ + I + I + F GEI Q PP
Sbjct: 73 IETYQAQHKEYTGTITLGATTPSYDLETEIDNTFDILEINEAQILENTKQFVGEIDQRPP 132
Query: 423 MFSAIK 428
+FSA+K
Sbjct: 133 VFSALK 138
>gi|408790575|ref|ZP_11202193.1| tRNA pseudouridine synthase B [Lactobacillus florum 2F]
gi|408520122|gb|EKK20216.1| tRNA pseudouridine synthase B [Lactobacillus florum 2F]
Length = 303
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/121 (42%), Positives = 73/121 (60%), Gaps = 1/121 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ +NKP G TSF ++R L K+VGH+GTLDP G+L +C+G ATKLVD
Sbjct: 5 IIPLNKPVGMTSFDCVSRIRHLYNQKRVGHSGTLDPNVNGVLPICLGYATKLVDNLMATG 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQRE-PWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG AT+T D D +I + ++ + D+ I F G+ Q+PPM+SA+KV
Sbjct: 65 KIYQGAITLGFATTTEDLDGTIIATDFDFKPLTDQQINNGFQHFLGDTIQIPPMYSAVKV 124
Query: 430 R 430
+
Sbjct: 125 K 125
>gi|334880366|emb|CCB81092.1| tRNA pseudouridine synthase B [Lactobacillus pentosus MP-10]
gi|339639030|emb|CCC18241.1| tRNA pseudouridine synthase B [Lactobacillus pentosus IG1]
Length = 307
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/115 (46%), Positives = 69/115 (60%), Gaps = 1/115 (0%)
Query: 316 KPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSG 375
KP+G TSF K+RRL + +KVGH+GTLDP G+L +C+G ATK+V K Y G
Sbjct: 10 KPRGMTSFDCVAKIRRLYQTRKVGHSGTLDPNVDGVLPICIGNATKVVQFLVASGKEYQG 69
Query: 376 VFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
LG AT+T D D I R+ + D I A A G+I Q+PPMFSA+KV
Sbjct: 70 SITLGFATTTEDLDGDEIARQAVDAPFSDAAIDDALAQMTGDITQIPPMFSAVKV 124
>gi|384101588|ref|ZP_10002627.1| tRNA pseudouridine synthase B [Rhodococcus imtechensis RKJ300]
gi|383841142|gb|EID80437.1| tRNA pseudouridine synthase B [Rhodococcus imtechensis RKJ300]
Length = 305
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 74/119 (62%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+K G TS V + R+L+ +KVGHAGTLDPMATG+L++ V +ATKL+
Sbjct: 16 LLIVDKDAGVTSHDVVARCRKLLGTRKVGHAGTLDPMATGVLVLGVERATKLLGLLALTT 75
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ RLG+AT+T DA+ V+ + DE+I + G+I Q+P SAIKV
Sbjct: 76 KAYTATIRLGQATTTDDAEGEVVASADASGVTDEEIAAQVHTLTGDIQQIPSSVSAIKV 134
>gi|269127533|ref|YP_003300903.1| tRNA pseudouridine synthase B [Thermomonospora curvata DSM 43183]
gi|268312491|gb|ACY98865.1| tRNA pseudouridine synthase B [Thermomonospora curvata DSM 43183]
Length = 289
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/119 (47%), Positives = 75/119 (63%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP GWTS V +LRRL ++VGHAGTLDPMATG+L+V VGKAT+L+
Sbjct: 5 LVIVDKPAGWTSHDVVARLRRLTGTRRVGHAGTLDPMATGVLVVGVGKATRLLGHLALTD 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y RLG++T T DA+ + P + D ++ A G+I QVPP SAIKV
Sbjct: 65 KVYEATIRLGQSTDTDDAEGEITATTPAGGVTDAALQAAVKGLTGQIMQVPPRVSAIKV 123
>gi|81428853|ref|YP_395853.1| tRNA-specific pseudouridylate synthase (tRNA pseudouridine synthase
B) [Lactobacillus sakei subsp. sakei 23K]
gi|91208082|sp|Q38W87.1|TRUB_LACSS RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|78610495|emb|CAI55546.1| tRNA-specific pseudouridylate synthase (tRNA pseudouridine synthase
B) [Lactobacillus sakei subsp. sakei 23K]
Length = 305
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/115 (46%), Positives = 76/115 (66%), Gaps = 1/115 (0%)
Query: 316 KPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSG 375
K +G TS K+RR++ +KKVGH+GTLDP G+L +C+G+ATK+VD+ K Y+G
Sbjct: 9 KERGMTSNDCVFKVRRILHMKKVGHSGTLDPNVDGVLPICIGQATKVVDQLVHSGKVYTG 68
Query: 376 VFRLGEATSTWDADSPVIQREPW-EHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
LG +T+T D D V++ + E I E I++ ASF GE Q+PPMFSA+KV
Sbjct: 69 EITLGLSTTTEDLDGEVVEEQQLTEPISTEKIKETLASFLGESIQIPPMFSAVKV 123
>gi|270285157|ref|ZP_06194551.1| tRNA pseudouridine synthase B [Chlamydia muridarum Nigg]
gi|301336552|ref|ZP_07224754.1| tRNA pseudouridine synthase B [Chlamydia muridarum MopnTet14]
gi|13959599|sp|Q9PKU2.1|TRUB_CHLMU RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
Length = 241
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 80/125 (64%), Gaps = 2/125 (1%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVG-KATKLVDR 365
P ++LV+KP+G TSF++ L RL+ VKK+GHAGTLDP ATG++++ +G K T+L D
Sbjct: 7 PIEGVLLVDKPQGRTSFSLIRSLVRLIGVKKIGHAGTLDPFATGVMVMLIGRKFTRLSDI 66
Query: 366 YQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFS 425
K YS V LG T T+D D ++ R E++ + + F+GEI QVPPMFS
Sbjct: 67 MLFEDKEYSAVAHLGTTTDTYDCDGKIVGRSKKVPTM-EEVLECTSYFQGEIQQVPPMFS 125
Query: 426 AIKVR 430
A KV+
Sbjct: 126 AKKVQ 130
>gi|397737035|ref|ZP_10503710.1| tRNA pseudouridine synthase B [Rhodococcus sp. JVH1]
gi|396927111|gb|EJI94345.1| tRNA pseudouridine synthase B [Rhodococcus sp. JVH1]
Length = 305
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 74/119 (62%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+K G TS V + R+L+ +KVGHAGTLDPMATG+L++ V +ATKL+
Sbjct: 16 LLIVDKDAGVTSHDVVARCRKLLGTRKVGHAGTLDPMATGVLVLGVERATKLLGLLALTT 75
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ RLG+AT+T DA+ V+ + DE+I + G+I Q+P SAIKV
Sbjct: 76 KAYTATIRLGQATTTDDAEGEVVASADASGVTDEEIAAQVHTLTGDIQQIPSSVSAIKV 134
>gi|386585969|ref|YP_006082371.1| tRNA pseudouridine synthase B [Streptococcus suis D12]
gi|353738115|gb|AER19123.1| tRNA pseudouridine synthase B [Streptococcus suis D12]
Length = 292
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 77/119 (64%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ V K G TS V KLR++++ KK+GH GTLDP TG+L + VGKAT++++ Q
Sbjct: 5 IINVKKEAGMTSHDVVFKLRKILQEKKIGHGGTLDPDVTGVLPIAVGKATRMIEYMQEEG 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G +G +T+T DA +++R P +I ++ + + SF G I Q+PPM+SA+KV
Sbjct: 65 KIYEGEITIGYSTTTEDASGDLVERTPVLYIAEQAVDEVMTSFVGTITQIPPMYSAVKV 123
>gi|229496096|ref|ZP_04389818.1| tRNA pseudouridine synthase B [Porphyromonas endodontalis ATCC
35406]
gi|229316992|gb|EEN82903.1| tRNA pseudouridine synthase B [Porphyromonas endodontalis ATCC
35406]
Length = 261
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 73/128 (57%), Gaps = 6/128 (4%)
Query: 308 FGTMVLVNKPKGWTSFTVCGKLRRLVKVK------KVGHAGTLDPMATGLLIVCVGKATK 361
G+++ V+KP WTSF V + R +VK KVGH GTLDP ATGLL++C G+ATK
Sbjct: 23 MGSIIAVDKPLDWTSFDVVNRFRIMVKQTVGLKKIKVGHTGTLDPKATGLLLLCTGRATK 82
Query: 362 LVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVP 421
+++ K Y + G T ++D + P P+EHI + +A F G QVP
Sbjct: 83 QIEQLMLNRKEYVATLKFGATTPSFDLEHPEDAHYPYEHITQGMLEEALQEFLGTTLQVP 142
Query: 422 PMFSAIKV 429
P+FSA+ V
Sbjct: 143 PIFSAVSV 150
>gi|189460199|ref|ZP_03008984.1| hypothetical protein BACCOP_00836 [Bacteroides coprocola DSM 17136]
gi|189433060|gb|EDV02045.1| tRNA pseudouridine synthase B [Bacteroides coprocola DSM 17136]
Length = 234
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 76/127 (59%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ +KP WTSF + K+R R + VKK VGHAGTLDP+ATG++I+C GKATK
Sbjct: 6 GEVLYFDKPLRWTSFALVNKVRYHISRKLGVKKIKVGHAGTLDPLATGVMIICTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y +LG T ++D + + P EHI + + +F G I Q+PP
Sbjct: 66 IEEFQYHTKEYIATLQLGATTPSYDLEKEIDATYPTEHITRQLVEDTLKNFMGTIEQIPP 125
Query: 423 MFSAIKV 429
FSA KV
Sbjct: 126 AFSACKV 132
>gi|218898962|ref|YP_002447373.1| tRNA pseudouridine synthase B [Bacillus cereus G9842]
gi|423561784|ref|ZP_17538060.1| tRNA pseudouridine synthase B [Bacillus cereus MSX-A1]
gi|218545088|gb|ACK97482.1| tRNA pseudouridine synthase B [Bacillus cereus G9842]
gi|401202041|gb|EJR08906.1| tRNA pseudouridine synthase B [Bacillus cereus MSX-A1]
Length = 307
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/120 (44%), Positives = 76/120 (63%), Gaps = 1/120 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKVLREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + + I ++I K A G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETKNIDRAITRKEIEKVLAELTGTIEQMPPMFSAVKV 123
>gi|49186660|ref|YP_029912.1| tRNA pseudouridine synthase B [Bacillus anthracis str. Sterne]
gi|65321137|ref|ZP_00394096.1| COG0130: Pseudouridine synthase [Bacillus anthracis str. A2012]
gi|165872605|ref|ZP_02217236.1| tRNA pseudouridine synthase B [Bacillus anthracis str. A0488]
gi|167635824|ref|ZP_02394133.1| tRNA pseudouridine synthase B [Bacillus anthracis str. A0442]
gi|167639765|ref|ZP_02398034.1| tRNA pseudouridine synthase B [Bacillus anthracis str. A0193]
gi|177652143|ref|ZP_02934689.1| tRNA pseudouridine synthase B [Bacillus anthracis str. A0174]
gi|190568450|ref|ZP_03021357.1| tRNA pseudouridine synthase B [Bacillus anthracis str.
Tsiankovskii-I]
gi|227813282|ref|YP_002813291.1| tRNA pseudouridine synthase B [Bacillus anthracis str. CDC 684]
gi|229604348|ref|YP_002868048.1| tRNA pseudouridine synthase B [Bacillus anthracis str. A0248]
gi|254722004|ref|ZP_05183793.1| tRNA pseudouridine synthase B [Bacillus anthracis str. A1055]
gi|254735848|ref|ZP_05193554.1| tRNA pseudouridine synthase B [Bacillus anthracis str. Western
North America USA6153]
gi|254739626|ref|ZP_05197320.1| tRNA pseudouridine synthase B [Bacillus anthracis str. Kruger B]
gi|254756001|ref|ZP_05208032.1| tRNA pseudouridine synthase B [Bacillus anthracis str. Vollum]
gi|254759338|ref|ZP_05211363.1| tRNA pseudouridine synthase B [Bacillus anthracis str. Australia
94]
gi|270000605|ref|YP_003329044.1| tRNA pseudouridine synthase B [Bacillus anthracis str. Ames]
gi|291612220|ref|YP_003541034.1| tRNA pseudouridine synthase B [Bacillus anthracis str. 'Ames
Ancestor']
gi|386737632|ref|YP_006210813.1| tRNA pseudouridine synthase B [Bacillus anthracis str. H9401]
gi|421507350|ref|ZP_15954270.1| tRNA pseudouridine synthase B [Bacillus anthracis str. UR-1]
gi|421639564|ref|ZP_16080155.1| tRNA pseudouridine synthase B [Bacillus anthracis str. BF1]
gi|37088013|sp|P59873.1|TRUB_BACAN RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|49180587|gb|AAT55963.1| tRNA pseudouridine synthase B [Bacillus anthracis str. Sterne]
gi|164711637|gb|EDR17183.1| tRNA pseudouridine synthase B [Bacillus anthracis str. A0488]
gi|167512166|gb|EDR87543.1| tRNA pseudouridine synthase B [Bacillus anthracis str. A0193]
gi|167528781|gb|EDR91539.1| tRNA pseudouridine synthase B [Bacillus anthracis str. A0442]
gi|172082512|gb|EDT67577.1| tRNA pseudouridine synthase B [Bacillus anthracis str. A0174]
gi|190560454|gb|EDV14432.1| tRNA pseudouridine synthase B [Bacillus anthracis str.
Tsiankovskii-I]
gi|224552839|gb|ACN55052.1| tRNA pseudouridine synthase B [Bacillus anthracis str. 'Ames
Ancestor']
gi|227005085|gb|ACP14828.1| tRNA pseudouridine synthase B [Bacillus anthracis str. CDC 684]
gi|229268756|gb|ACQ50393.1| tRNA pseudouridine synthase B [Bacillus anthracis str. A0248]
gi|269850275|gb|ACZ49993.1| tRNA pseudouridine synthase B [Bacillus anthracis str. Ames]
gi|384387484|gb|AFH85145.1| tRNA pseudouridine synthase B [Bacillus anthracis str. H9401]
gi|401822484|gb|EJT21634.1| tRNA pseudouridine synthase B [Bacillus anthracis str. UR-1]
gi|403393229|gb|EJY90474.1| tRNA pseudouridine synthase B [Bacillus anthracis str. BF1]
Length = 307
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 78/120 (65%), Gaps = 1/120 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + + I +++ +A A+ G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETKYVDRVITRKEVEEALATLTGTIEQMPPMFSAVKV 123
>gi|403716945|ref|ZP_10942353.1| tRNA pseudouridine synthase B [Kineosphaera limosa NBRC 100340]
gi|403209450|dbj|GAB97036.1| tRNA pseudouridine synthase B [Kineosphaera limosa NBRC 100340]
Length = 353
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/132 (43%), Positives = 77/132 (58%), Gaps = 7/132 (5%)
Query: 301 PPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKAT 360
P DG +++V+KP GWTS V G RRL +KVGHAGTLDPMATG+L+V + K T
Sbjct: 7 PTVGDG----LLVVDKPAGWTSHQVVGACRRLAGTRKVGHAGTLDPMATGVLVVGINKGT 62
Query: 361 KLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREP---WEHIKDEDIRKAAASFRGEI 417
+L+ G K Y+ RLG AT T DA+ V P + + ++ A AS G+I
Sbjct: 63 RLLTYLVGADKDYTATIRLGVATLTDDAEGQVTGLAPSAAVAAVTEAELAAAIASLTGDI 122
Query: 418 WQVPPMFSAIKV 429
QVP SA+K+
Sbjct: 123 QQVPSAVSALKI 134
>gi|156334683|ref|XP_001619506.1| hypothetical protein NEMVEDRAFT_v1g5335 [Nematostella vectensis]
gi|156202835|gb|EDO27406.1| predicted protein [Nematostella vectensis]
Length = 174
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/92 (51%), Positives = 60/92 (65%)
Query: 337 KVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQRE 396
KVGHAGTLDP+A+GLLI+C GK TK + YQG +K Y+G F +G T ++D ++ V Q
Sbjct: 2 KVGHAGTLDPLASGLLIICTGKQTKNISEYQGQVKEYTGTFTIGSTTPSYDLETEVNQTF 61
Query: 397 PWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
HI E I K F G I Q PP+FSA+K
Sbjct: 62 STTHITKELIHKTTEQFIGSIQQQPPIFSALK 93
>gi|432342010|ref|ZP_19591320.1| tRNA pseudouridine synthase B [Rhodococcus wratislaviensis IFP
2016]
gi|430772953|gb|ELB88671.1| tRNA pseudouridine synthase B [Rhodococcus wratislaviensis IFP
2016]
Length = 305
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 74/119 (62%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+K G TS V + R+L+ +KVGHAGTLDPMATG+L++ V +ATKL+
Sbjct: 16 LLIVDKDAGVTSHDVVARCRKLLGTRKVGHAGTLDPMATGVLVLGVERATKLLGLLALTT 75
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ RLG+AT+T DA+ V+ + DE+I + G+I Q+P SAIKV
Sbjct: 76 KAYTATIRLGQATTTDDAEGEVVASADASGVTDEEIAAQVHTLTGDIQQIPSSVSAIKV 134
>gi|421788988|ref|ZP_16225256.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii Naval-82]
gi|410399874|gb|EKP52055.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii Naval-82]
Length = 301
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 71/118 (60%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+ L+NKP G +S K+R L + +K GH G LDP+ATGLL +C+G+ATK
Sbjct: 16 VFLLNKPLGLSSNAALQKVRWLYRAQKAGHTGALDPLATGLLPICLGEATKFSHYLLDST 75
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y RLG+ T+T D + ++Q P + +E I + FRG+I QVPPM+SA+K
Sbjct: 76 KRYQTTVRLGQTTTTGDVEGDILQERPIPVLSEELIEQTLEKFRGDIQQVPPMYSALK 133
>gi|168184621|ref|ZP_02619285.1| tRNA pseudouridine synthase B [Clostridium botulinum Bf]
gi|237795851|ref|YP_002863403.1| tRNA pseudouridine synthase B [Clostridium botulinum Ba4 str. 657]
gi|182672271|gb|EDT84232.1| tRNA pseudouridine synthase B [Clostridium botulinum Bf]
gi|229262556|gb|ACQ53589.1| tRNA pseudouridine synthase B [Clostridium botulinum Ba4 str. 657]
Length = 289
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/116 (44%), Positives = 76/116 (65%), Gaps = 1/116 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V KPKG TSF V +R++ K+KKVGH GTLDP+A+G+L VC+GKATK+VD K Y
Sbjct: 7 VLKPKGITSFDVVRDIRKIAKIKKVGHTGTLDPLASGVLPVCIGKATKIVDYIMEGTKTY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
+LG T T+D + V++ E ++ ++ + + G+I QVPPM+SA+K+
Sbjct: 67 RVEMKLGTTTDTYDREGTVLE-EKEINLTPIEVEETIKKYIGDIDQVPPMYSALKI 121
>gi|84498579|ref|ZP_00997342.1| tRNA pseudouridine synthase B [Janibacter sp. HTCC2649]
gi|84381112|gb|EAP96997.1| tRNA pseudouridine synthase B [Janibacter sp. HTCC2649]
Length = 312
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/136 (45%), Positives = 82/136 (60%), Gaps = 7/136 (5%)
Query: 301 PPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKAT 360
PP DG +++V+KP WTS V + RRL +KVGHAGTLDPMATG+L++ VG+AT
Sbjct: 5 PPHTDG----LLVVDKPSEWTSHDVVARARRLCNTRKVGHAGTLDPMATGVLVLGVGRAT 60
Query: 361 KLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQV 420
KL+ G+ K Y+ RLG+AT T DA+ V + D+ I A A+ G I QV
Sbjct: 61 KLLTFLVGVDKDYTATIRLGQATLTDDAEGEVTSAPGAAEVDDDAIAAAVATLTGAIEQV 120
Query: 421 PPMFSAIKV---RVFH 433
P SAIK+ R +H
Sbjct: 121 PSSVSAIKIKGQRSYH 136
>gi|421554974|ref|ZP_16000913.1| tRNA pseudouridine synthase B [Neisseria meningitidis 98008]
gi|402332127|gb|EJU67458.1| tRNA pseudouridine synthase B [Neisseria meningitidis 98008]
Length = 306
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 72/122 (59%), Gaps = 1/122 (0%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P ++L++KP+G +S T K RRL +K GH G LDP+ATGLL VC G+ATK
Sbjct: 9 PVNGVLLLDKPEGLSSNTALQKARRLFHAEKAGHTGVLDPLATGLLPVCFGEATKFAQYL 68
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
K Y+ +LGEA+ST DA+ ++ + I + + A + G I QVPPMFSA
Sbjct: 69 INADKAYTATLKLGEASSTGDAEGEIVATARAD-ISLAEFQTACQALTGNIRQVPPMFSA 127
Query: 427 IK 428
+K
Sbjct: 128 LK 129
>gi|452990671|emb|CCQ98080.1| tRNA pseudouridine synthase B [Clostridium ultunense Esp]
Length = 313
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/120 (44%), Positives = 77/120 (64%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V KP+G TS V K+RR + +K++GHAGTLDP ATG+L +C+G+ATK+V+ Q
Sbjct: 5 ILVVAKPRGLTSHDVIQKVRRFLGIKRIGHAGTLDPEATGVLPLCIGRATKIVEYIQDRS 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVR 430
K Y + G AT T D V++R H+ E++ A SF G Q PPM+SA+KV+
Sbjct: 65 KTYVAEWTGGIATDTEDQSGNVVERINGLHLTWEEVTSAFTSFIGPYAQTPPMYSAVKVK 124
>gi|349610015|ref|ZP_08889377.1| tRNA pseudouridine synthase B [Neisseria sp. GT4A_CT1]
gi|348610785|gb|EGY60467.1| tRNA pseudouridine synthase B [Neisseria sp. GT4A_CT1]
Length = 304
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 72/122 (59%), Gaps = 1/122 (0%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P ++L++KP+G +S T K RRL +K GH G LDP+ATGLL VC G+ATK
Sbjct: 9 PVNGVLLLDKPEGLSSNTALQKTRRLYNAEKAGHTGVLDPLATGLLPVCFGEATKFAQYL 68
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
K Y+ +LGEA+ST DA+ +I + I + + A + G I QVPPMFSA
Sbjct: 69 LDADKAYTATLKLGEASSTGDAEGEIIATARAD-ISLAEFQTACQALTGNIRQVPPMFSA 127
Query: 427 IK 428
+K
Sbjct: 128 LK 129
>gi|327402925|ref|YP_004343763.1| tRNA pseudouridine synthase B [Fluviicola taffensis DSM 16823]
gi|327318433|gb|AEA42925.1| tRNA pseudouridine synthase B [Fluviicola taffensis DSM 16823]
Length = 231
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 77/127 (60%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK------KVGHAGTLDPMATGLLIVCVGKATKL 362
G+ +LV+KP WTSF KLR ++ K KVGHAGTLDP+ATGLL++C+GK TKL
Sbjct: 8 GSTILVDKPLKWTSFDAVNKLRWHLRQKLGVKKLKVGHAGTLDPLATGLLVICIGKHTKL 67
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ K Y+G F LG+ T ++D ++ + I E + + SF G QVPP
Sbjct: 68 IEGLTSDTKTYTGTFLLGKTTPSYDLETKYNSEKEPTGITSEQLEEVRLSFLGVQQQVPP 127
Query: 423 MFSAIKV 429
+FSA ++
Sbjct: 128 LFSAKQI 134
>gi|294785247|ref|ZP_06750535.1| tRNA pseudouridine synthase B [Fusobacterium sp. 3_1_27]
gi|294486961|gb|EFG34323.1| tRNA pseudouridine synthase B [Fusobacterium sp. 3_1_27]
Length = 287
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/128 (42%), Positives = 84/128 (65%), Gaps = 4/128 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++++NKPKG TSF V +L++++K KK+GH GTLDP+A G+++VCVGKATKL +
Sbjct: 4 IIVINKPKGITSFDVIRRLKKILKTKKIGHTGTLDPLAIGVMLVCVGKATKLASDLEAKD 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV- 429
K Y F +G AT T+D + I E + E++ ++ F G I QVPPM+SAIK+
Sbjct: 64 KVYIADFDIGYATDTYDIEGKKIAENIIE-VSKENLEQSLKKFIGNIKQVPPMYSAIKID 122
Query: 430 --RVFHFS 435
+++H +
Sbjct: 123 GNKLYHLA 130
>gi|297180952|gb|ADI17155.1| pseudouridine synthase [uncultured gamma proteobacterium
HF0070_08D07]
Length = 302
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 74/119 (62%)
Query: 312 VLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIK 371
+ ++KPKG TS L++ + K+GHAGTLDPMATGLL++C+G+ATK K
Sbjct: 12 IALDKPKGPTSHATIQDLKKRFGLPKIGHAGTLDPMATGLLLLCIGEATKFSRFLIEADK 71
Query: 372 GYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVR 430
Y LGE+T T+DAD + +++ + I ++ + +A RG I Q PPMFSA K++
Sbjct: 72 AYVAEIVLGESTDTYDADGQITEKKLIKGITNDSVERALCDLRGAILQKPPMFSAKKIK 130
>gi|256379825|ref|YP_003103485.1| tRNA pseudouridine synthase B [Actinosynnema mirum DSM 43827]
gi|255924128|gb|ACU39639.1| tRNA pseudouridine synthase B [Actinosynnema mirum DSM 43827]
Length = 299
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 73/119 (61%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V K+RR++ +KVGHAGTLDPMATG+L++ V +ATKL+
Sbjct: 13 LVVVDKPDGMTSHDVVAKVRRILGTRKVGHAGTLDPMATGVLVLGVERATKLLGHLALDS 72
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y RLG +T+T DA+ V+ + ++ IR A G I QVP SA+KV
Sbjct: 73 KAYLSTIRLGASTTTDDAEGEVLSSADSTAVPEDAIRAGVAKLTGAIQQVPSAVSAVKV 131
>gi|228966755|ref|ZP_04127799.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar sotto
str. T04001]
gi|402558864|ref|YP_006601588.1| tRNA pseudouridine synthase B [Bacillus thuringiensis HD-771]
gi|423359154|ref|ZP_17336657.1| tRNA pseudouridine synthase B [Bacillus cereus VD022]
gi|228792854|gb|EEM40412.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar sotto
str. T04001]
gi|401085026|gb|EJP93272.1| tRNA pseudouridine synthase B [Bacillus cereus VD022]
gi|401787516|gb|AFQ13555.1| tRNA pseudouridine synthase B [Bacillus thuringiensis HD-771]
Length = 307
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/120 (44%), Positives = 76/120 (63%), Gaps = 1/120 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKVLREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + + I ++I K A G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETKNVDRAITRKEIEKVLAELTGTIEQMPPMFSAVKV 123
>gi|326382951|ref|ZP_08204641.1| tRNA pseudouridine synthase B [Gordonia neofelifaecis NRRL B-59395]
gi|326198541|gb|EGD55725.1| tRNA pseudouridine synthase B [Gordonia neofelifaecis NRRL B-59395]
Length = 299
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 73/119 (61%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+K TS V K R+ ++VGHAGTLDPMATG+L++ + +ATKL+
Sbjct: 11 LLVVDKAADMTSHDVVAKCRKAFNTRRVGHAGTLDPMATGVLVIGIERATKLLGLLSLTT 70
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ RLG++TST DA+ VI+ + DE+I AS G+I QVP SAIKV
Sbjct: 71 KSYAATIRLGQSTSTDDAEGEVIESRDASGVGDEEIAAVVASLTGDIEQVPAKVSAIKV 129
>gi|170706782|ref|ZP_02897240.1| tRNA pseudouridine synthase B [Bacillus anthracis str. A0389]
gi|170128200|gb|EDS97069.1| tRNA pseudouridine synthase B [Bacillus anthracis str. A0389]
Length = 307
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 78/120 (65%), Gaps = 1/120 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + + I +++ +A A+ G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETKYVDRVITRKEVEEALATLTGTIEQMPPMFSAVKV 123
>gi|430745767|ref|YP_007204896.1| tRNA pseudouridine 55 synthase [Singulisphaera acidiphila DSM
18658]
gi|430017487|gb|AGA29201.1| tRNA pseudouridine 55 synthase [Singulisphaera acidiphila DSM
18658]
Length = 303
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 77/126 (61%)
Query: 304 WDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLV 363
W+G ++ +NKP G TS V + R + KVGHAGTLDP+A+G+L+VC+GKAT+L+
Sbjct: 6 WNGTESGLLNLNKPGGMTSRDVVNIISRQRRGMKVGHAGTLDPLASGVLVVCLGKATRLI 65
Query: 364 DRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPM 423
+ Q M K Y RLG ++T DAD V++ E + +IR+A G + Q PP
Sbjct: 66 EYVQRMPKTYRTTVRLGAVSNTLDADGEVVEVEAPRQPTEPEIREALLPLIGTVLQKPPE 125
Query: 424 FSAIKV 429
SA+KV
Sbjct: 126 VSALKV 131
>gi|225374832|ref|ZP_03752053.1| hypothetical protein ROSEINA2194_00453 [Roseburia inulinivorans DSM
16841]
gi|225213293|gb|EEG95647.1| hypothetical protein ROSEINA2194_00453 [Roseburia inulinivorans DSM
16841]
Length = 311
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 75/119 (63%), Gaps = 1/119 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ V K KG+TSF V KLR + K KK+GH GTLDP A G+L VC+GKATK+ D
Sbjct: 5 IINVYKEKGYTSFDVVAKLRGIFKQKKIGHTGTLDPDAEGVLPVCLGKATKVCDLLTDKS 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y V LG+ T T D V++ + + + +E +R+ SF G+ Q+PPM+SA+KV
Sbjct: 65 KEYEAVLLLGKVTDTQDITGTVLEEKDVK-VTEEAVRETVLSFVGDYMQIPPMYSALKV 122
>gi|154707141|ref|YP_001423975.1| tRNA pseudouridine synthase B [Coxiella burnetii Dugway 5J108-111]
gi|189036468|sp|A9KBM3.1|TRUB_COXBN RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|154356427|gb|ABS77889.1| tRNA pseudouridine synthase B [Coxiella burnetii Dugway 5J108-111]
Length = 309
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 78/132 (59%)
Query: 297 STELPPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCV 356
+T P + P ++L++KP G TS +++RL KK GH G+LDP+ATGLL +C+
Sbjct: 3 ATNHPKLFKRPVDGVLLLDKPGGMTSNEALQRVKRLFHAKKAGHTGSLDPLATGLLPICL 62
Query: 357 GKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGE 416
G+ATK G K YS RLG T++ D++SP++ P + + K ++FRG
Sbjct: 63 GEATKFSQFLLGADKSYSVKGRLGVRTASGDSESPILTERPIPKLTKRALEKTLSAFRGV 122
Query: 417 IWQVPPMFSAIK 428
I Q P M+SA+K
Sbjct: 123 IDQTPSMYSALK 134
>gi|374708729|ref|ZP_09713163.1| tRNA pseudouridine synthase B [Sporolactobacillus inulinus CASD]
Length = 307
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 79/129 (61%), Gaps = 5/129 (3%)
Query: 302 PTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATK 361
P ++G ++ + KP+G TS +LR+L+K +K+GH GTLDP G+L++C+GKATK
Sbjct: 2 PEYNG----LLPLYKPRGMTSHDCVFRLRKLLKFRKIGHTGTLDPAVDGVLVLCLGKATK 57
Query: 362 LVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWE-HIKDEDIRKAAASFRGEIWQV 420
+ K Y GV RLG +T+T DA VI+ P E H+ + K + F G+I Q
Sbjct: 58 IAQYLLDYSKIYQGVIRLGSSTTTEDATGDVIETIPVEKHLDRAYVEKILSRFVGDIEQT 117
Query: 421 PPMFSAIKV 429
PM+SA+KV
Sbjct: 118 APMYSAVKV 126
>gi|359394196|ref|ZP_09187249.1| tRNA pseudouridine synthase B [Halomonas boliviensis LC1]
gi|357971443|gb|EHJ93888.1| tRNA pseudouridine synthase B [Halomonas boliviensis LC1]
Length = 306
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 73/122 (59%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P ++L++KPKG +S ++RRL + +K GH GTLDPMATGLL +C+G+ATK
Sbjct: 9 PVNGVLLLDKPKGVSSNHALQRVRRLFQAQKAGHTGTLDPMATGLLPICLGEATKFSSHL 68
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
K Y LG T T DA+ +I++ + +D+ FRGEI QVPPM+SA
Sbjct: 69 LEADKVYRTRIELGVITDTGDAEGTIIEQHEVPSLSVDDVEAVLTRFRGEIDQVPPMYSA 128
Query: 427 IK 428
+K
Sbjct: 129 LK 130
>gi|256847053|ref|ZP_05552499.1| tRNA pseudouridine synthase B [Lactobacillus coleohominis
101-4-CHN]
gi|256715717|gb|EEU30692.1| tRNA pseudouridine synthase B [Lactobacillus coleohominis
101-4-CHN]
Length = 299
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 79/124 (63%), Gaps = 4/124 (3%)
Query: 316 KPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSG 375
K +G TSF +LR+L+ KK+GH+GTLDP +G+L +C+G ATKLV K Y+G
Sbjct: 9 KERGMTSFDCIRRLRQLLHTKKIGHSGTLDPNVSGVLPICIGTATKLVPYLMASGKVYAG 68
Query: 376 VFRLGEATSTWDADSPVIQREP-WEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV---RV 431
+G+AT T D D V+ R+ + I D+ I++A G+I Q+PPM+SA+KV R+
Sbjct: 69 EVLIGQATITEDLDGEVVDRQAVLKPIDDQQIKEAMQHLTGKITQIPPMYSAVKVNGKRL 128
Query: 432 FHFS 435
+ ++
Sbjct: 129 YEYA 132
>gi|254805170|ref|YP_003083391.1| tRNA pseudouridine synthase B [Neisseria meningitidis alpha14]
gi|254668712|emb|CBA06495.1| tRNA pseudouridine synthase B [Neisseria meningitidis alpha14]
Length = 306
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 72/122 (59%), Gaps = 1/122 (0%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P ++L++KP+G +S T K RRL +K GH G LDP+ATGLL VC G+ATK
Sbjct: 9 PVNGVLLLDKPEGLSSNTALQKARRLFHAEKAGHTGVLDPLATGLLPVCFGEATKFAQYL 68
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
K Y+ +LGEA+ST DA+ +I + I + + A + G I QVPPMFSA
Sbjct: 69 LDADKAYTATLKLGEASSTGDAEGEIIATARAD-ISLAEFQTACQALTGNIRQVPPMFSA 127
Query: 427 IK 428
+K
Sbjct: 128 LK 129
>gi|239826660|ref|YP_002949284.1| tRNA pseudouridine synthase B [Geobacillus sp. WCH70]
gi|239806953|gb|ACS24018.1| tRNA pseudouridine synthase B [Geobacillus sp. WCH70]
Length = 302
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 76/121 (62%), Gaps = 1/121 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP G TS ++RR++++KKVGH GTLDP +G+L +C+GKAT++ + G
Sbjct: 4 VLLLHKPPGMTSHDCVARIRRMLQIKKVGHTGTLDPNVSGVLPICIGKATRIAEFLTGAT 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDED-IRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG AT+T D+ +I ++ + + D I GE+ Q PPM+SA+KV
Sbjct: 64 KTYEGEVTLGIATTTEDSTGEIIAKQKVDRVIPRDEIEAVFRQLTGEVAQTPPMYSAVKV 123
Query: 430 R 430
+
Sbjct: 124 K 124
>gi|406669349|ref|ZP_11076627.1| tRNA pseudouridine synthase B [Facklamia ignava CCUG 37419]
gi|405583764|gb|EKB57698.1| tRNA pseudouridine synthase B [Facklamia ignava CCUG 37419]
Length = 302
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/115 (48%), Positives = 74/115 (64%), Gaps = 1/115 (0%)
Query: 316 KPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSG 375
K KG TS V KLR+++++K++GH GTLDP G+L+VC+GK TKLV+ K Y G
Sbjct: 10 KEKGLTSHDVVFKLRKILRMKRIGHTGTLDPDVEGVLVVCLGKGTKLVETLMDSDKVYRG 69
Query: 376 VFRLGEATSTWDADSPVIQR-EPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
LG +T T DA +I+R E + E I +A AS GEI QVPPM+SA+KV
Sbjct: 70 EVTLGYSTDTEDASGQIIERTRVTESLSTEAIDQAMASMVGEIDQVPPMYSAVKV 124
>gi|352081368|ref|ZP_08952246.1| tRNA pseudouridine synthase B [Rhodanobacter sp. 2APBS1]
gi|351683409|gb|EHA66493.1| tRNA pseudouridine synthase B [Rhodanobacter sp. 2APBS1]
Length = 308
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 70/118 (59%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KP+G +S +RRL++ K GH G LDP+ATGLL +C G+ATKL G
Sbjct: 15 IVLLDKPRGLSSNQALQAVRRLLRASKGGHTGALDPLATGLLPLCFGEATKLAGSLLGAR 74
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y RLG T T D++ V+++ P + I A RG I QVPPM+SA+K
Sbjct: 75 KAYLAECRLGVTTETADSEGEVVRQRPVPQLGAAAIEAALVKLRGRILQVPPMYSALK 132
>gi|255066482|ref|ZP_05318337.1| tRNA pseudouridine synthase B [Neisseria sicca ATCC 29256]
gi|255049362|gb|EET44826.1| tRNA pseudouridine synthase B [Neisseria sicca ATCC 29256]
Length = 304
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 72/122 (59%), Gaps = 1/122 (0%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P ++L++KP+G +S T K RRL +K GH G LDP+ATGLL VC G+ATK
Sbjct: 9 PVNGVLLLDKPEGLSSNTALQKARRLYNAEKAGHTGVLDPLATGLLPVCFGEATKFAQYL 68
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
K Y+ +LGEA+ST DA+ +I + I + + A + G I QVPPMFSA
Sbjct: 69 LDADKAYTATLKLGEASSTGDAEGEIIATARAD-ISLAEFQTACQALTGNIRQVPPMFSA 127
Query: 427 IK 428
+K
Sbjct: 128 LK 129
>gi|226949768|ref|YP_002804859.1| tRNA pseudouridine synthase B [Clostridium botulinum A2 str. Kyoto]
gi|226841174|gb|ACO83840.1| tRNA pseudouridine synthase B [Clostridium botulinum A2 str. Kyoto]
Length = 289
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/116 (44%), Positives = 75/116 (64%), Gaps = 1/116 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V KPKG TSF V +R++ K+KKVGH GTLDP+A+G+L VC+GKATK+VD K Y
Sbjct: 7 VLKPKGITSFDVVRHIRKIAKIKKVGHTGTLDPLASGVLPVCIGKATKIVDYIMEGTKTY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
+LG T T+D + V++ + + E + + + G+I QVPPM+SA+K+
Sbjct: 67 RVEMKLGTTTDTYDREGTVLEEKEIDLTPIE-VEETIKKYIGDIDQVPPMYSALKI 121
>gi|389798951|ref|ZP_10201959.1| tRNA pseudouridine synthase B [Rhodanobacter sp. 116-2]
gi|388444306|gb|EIM00426.1| tRNA pseudouridine synthase B [Rhodanobacter sp. 116-2]
Length = 308
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 70/118 (59%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KP+G +S +RRL++ K GH G LDP+ATGLL +C G+ATKL G
Sbjct: 15 IVLLDKPRGLSSNQALQAVRRLLRASKGGHTGALDPLATGLLPLCFGEATKLAGSLLGAR 74
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y RLG T T D++ V+++ P + I A RG I QVPPM+SA+K
Sbjct: 75 KAYLAECRLGVTTETADSEGEVVRQRPVPQLGAAAIEAALVKLRGRILQVPPMYSALK 132
>gi|298368697|ref|ZP_06980015.1| tRNA pseudouridine synthase B [Neisseria sp. oral taxon 014 str.
F0314]
gi|298282700|gb|EFI24187.1| tRNA pseudouridine synthase B [Neisseria sp. oral taxon 014 str.
F0314]
Length = 308
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 72/122 (59%), Gaps = 1/122 (0%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P ++L++KP+G +S T K RRL +K GH G LDP+ATGLL VC G+ATK
Sbjct: 9 PVNGVLLLDKPEGLSSNTALQKARRLYNAEKAGHTGVLDPLATGLLPVCFGEATKFAQYL 68
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
K Y+ +LGEA+ST DA+ +I + I + + A + G I QVPPMFSA
Sbjct: 69 LDADKAYTATLKLGEASSTGDAEGEIIATARAD-ISLAEFQTACQALTGNIRQVPPMFSA 127
Query: 427 IK 428
+K
Sbjct: 128 LK 129
>gi|419796040|ref|ZP_14321611.1| tRNA pseudouridine(55) synthase [Neisseria sicca VK64]
gi|385699891|gb|EIG30157.1| tRNA pseudouridine(55) synthase [Neisseria sicca VK64]
Length = 304
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 72/122 (59%), Gaps = 1/122 (0%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P ++L++KP+G +S T K RRL +K GH G LDP+ATGLL VC G+ATK
Sbjct: 9 PVNGVLLLDKPEGLSSNTALQKARRLYNAEKAGHTGVLDPLATGLLPVCFGEATKFAQYL 68
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
K Y+ +LGEA+ST DA+ +I + I + + A + G I QVPPMFSA
Sbjct: 69 LDADKAYTATLKLGEASSTGDAEGEIIATARAD-ISLAEFQTACQALTGNIRQVPPMFSA 127
Query: 427 IK 428
+K
Sbjct: 128 LK 129
>gi|95929623|ref|ZP_01312365.1| tRNA pseudouridine synthase B [Desulfuromonas acetoxidans DSM 684]
gi|95134320|gb|EAT15977.1| tRNA pseudouridine synthase B [Desulfuromonas acetoxidans DSM 684]
Length = 299
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 73/118 (61%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++++KP+G +S V ++RR KV++VGHAGTLDP+ATG+L+V VG+ T+L++
Sbjct: 4 LLVIDKPQGMSSHAVVQRVRRACKVRRVGHAGTLDPLATGVLLVGVGQCTRLIEYLMAQD 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y +LG T + D V Q+ + + I F G+I Q+PPMFSA+K
Sbjct: 64 KTYRATMKLGLVTDSQDITGQVQQQHDASAVTRQQIEDVCHQFVGQIEQIPPMFSALK 121
>gi|51246462|ref|YP_066346.1| tRNA pseudouridine synthase B [Desulfotalea psychrophila LSv54]
gi|54036456|sp|Q6AJY7.1|TRUB_DESPS RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|50877499|emb|CAG37339.1| probable tRNA pseudouridine synthase B [Desulfotalea psychrophila
LSv54]
Length = 246
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 72/119 (60%), Gaps = 1/119 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGK-ATKLVDRYQGM 369
+ L++KP G TSF V ++RR++ +KKVGHAGTLDP ATGLL+VC G+ ATK++ +
Sbjct: 10 IFLIDKPVGITSFGVVSRVRRILGMKKVGHAGTLDPFATGLLVVCAGRPATKMISSFMDG 69
Query: 370 IKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y LG T T D + I R+ + E I A F+G QVPP +SA+K
Sbjct: 70 EKEYIATLCLGVETETQDPEGAEIARKQVGFLHAETIETCLAGFKGTQMQVPPAYSALK 128
>gi|365876737|ref|ZP_09416256.1| tRNA pseudouridine synthase b [Elizabethkingia anophelis Ag1]
gi|442587035|ref|ZP_21005856.1| Pseudouridine synthase [Elizabethkingia anophelis R26]
gi|365755735|gb|EHM97655.1| tRNA pseudouridine synthase b [Elizabethkingia anophelis Ag1]
gi|442563268|gb|ELR80482.1| Pseudouridine synthase [Elizabethkingia anophelis R26]
Length = 235
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 77/127 (60%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGK----LRRLVKVKKV--GHAGTLDPMATGLLIVCVGKATKL 362
G ++LV+KP WTSF K L+R K+KKV GHAGTLDP ATGLL++C GKATK
Sbjct: 11 GQILLVDKPLDWTSFNAVNKIKWKLKREFKLKKVKVGHAGTLDPRATGLLVICTGKATKQ 70
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+ + Q K Y ++G T ++D + P I + I + +I A F GEI Q PP
Sbjct: 71 IPQIQDASKEYWAEIKIGVQTESYDTEKPEILPQDISGITEANIHNALKKFLGEIDQKPP 130
Query: 423 MFSAIKV 429
+FSA+KV
Sbjct: 131 IFSALKV 137
>gi|375136240|ref|YP_004996890.1| tRNA pseudouridine 55 synthase [Acinetobacter calcoaceticus PHEA-2]
gi|325123685|gb|ADY83208.1| tRNA pseudouridine 55 synthase [Acinetobacter calcoaceticus PHEA-2]
Length = 301
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 70/118 (59%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+ L+NKP G +S K+R L + +K GH G LDP+ATGLL +C+G+ATK
Sbjct: 16 VFLLNKPLGLSSNAALQKVRWLYRAQKAGHTGALDPLATGLLPICLGEATKFSHYLLDST 75
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y RLG+ T+T D + ++Q P + E I + FRG+I QVPPM+SA+K
Sbjct: 76 KRYQTTVRLGQTTTTGDVEGEILQERPIPVLSQELIEQTLEKFRGDIQQVPPMYSALK 133
>gi|223933475|ref|ZP_03625459.1| tRNA pseudouridine synthase B [Streptococcus suis 89/1591]
gi|330832928|ref|YP_004401753.1| tRNA pseudouridine synthase B [Streptococcus suis ST3]
gi|386584317|ref|YP_006080720.1| tRNA pseudouridine synthase B [Streptococcus suis D9]
gi|223897848|gb|EEF64225.1| tRNA pseudouridine synthase B [Streptococcus suis 89/1591]
gi|329307151|gb|AEB81567.1| tRNA pseudouridine synthase B [Streptococcus suis ST3]
gi|353736463|gb|AER17472.1| tRNA pseudouridine synthase B [Streptococcus suis D9]
Length = 292
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 77/119 (64%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ V K G TS V KLR++++ KK+GH GTLDP TG+L + VGKAT++++ Q
Sbjct: 5 IINVKKEAGMTSHDVVFKLRKILQEKKIGHGGTLDPDVTGVLPIAVGKATRMIEYMQEEG 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T D+ +++R P I ++ + +A SF G I Q+PPM+SA+KV
Sbjct: 65 KIYEGEITLGFSTTTEDSSGDLVERTPVLDIAEQAVDEAMTSFVGTITQIPPMYSAVKV 123
>gi|389774738|ref|ZP_10192857.1| tRNA pseudouridine synthase B [Rhodanobacter spathiphylli B39]
gi|388438337|gb|EIL95092.1| tRNA pseudouridine synthase B [Rhodanobacter spathiphylli B39]
Length = 308
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 71/118 (60%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KP G +S +RRL++ K GH G LDP+ATGLL +C G+ATKL G
Sbjct: 15 IVLLDKPLGLSSNQALQAVRRLLRASKGGHTGALDPLATGLLPLCFGEATKLAGSLLGAR 74
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y RLG +T T D++ +++R P + I A A RG I QVPPM+SA+K
Sbjct: 75 KAYLAECRLGISTDTADSEGEIVRRLPVPPLDAAAIETALARLRGHILQVPPMYSALK 132
>gi|293610744|ref|ZP_06693044.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|427424070|ref|ZP_18914207.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii WC-136]
gi|292827088|gb|EFF85453.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|425699178|gb|EKU68797.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii WC-136]
Length = 301
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 70/118 (59%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+ L+NKP G +S K+R L + +K GH G LDP+ATGLL +C+G+ATK
Sbjct: 16 VFLLNKPLGLSSNAALQKVRWLYRAQKAGHTGALDPLATGLLPICLGEATKFSHYLLDST 75
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y RLG+ T+T D + ++Q P + E I + FRG+I QVPPM+SA+K
Sbjct: 76 KRYQTTVRLGQTTTTGDVEGEILQERPIPVLSQELIEQTLEKFRGDIQQVPPMYSALK 133
>gi|313124026|ref|YP_004034285.1| tRNA pseudouridine synthase b [Lactobacillus delbrueckii subsp.
bulgaricus ND02]
gi|312280589|gb|ADQ61308.1| tRNA pseudouridine synthase B [Lactobacillus delbrueckii subsp.
bulgaricus ND02]
Length = 298
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 84/132 (63%), Gaps = 4/132 (3%)
Query: 308 FGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQ 367
F +++++K G TS V KLRRL+K KK+GHAGTLDP TG+L + +G+ATKL++
Sbjct: 2 FNGIIVIDKAAGMTSGDVVYKLRRLLKQKKIGHAGTLDPEVTGVLPIALGQATKLIELMH 61
Query: 368 GMIKGYSGVFRLGEATSTWDADSPVI-QREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
K Y G LG AT ++D + ++ +R + + D+ I+ A F GEI Q PP++SA
Sbjct: 62 ERPKAYVGEGMLGLATDSYDLEGKILAERALSQPVSDQAIKAAMEKFTGEIVQQPPIYSA 121
Query: 427 IKV---RVFHFS 435
++V R++ ++
Sbjct: 122 VRVNGKRLYEYA 133
>gi|295426203|ref|ZP_06818865.1| tRNA pseudouridine synthase B [Lactobacillus amylolyticus DSM
11664]
gi|295064112|gb|EFG55058.1| tRNA pseudouridine synthase B [Lactobacillus amylolyticus DSM
11664]
Length = 297
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 76/125 (60%), Gaps = 1/125 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++++K +G TS V LR+ + +KK+GHAGTLDP TG+L + +G+ATKL++
Sbjct: 5 ILVIDKDQGMTSADVVYHLRKALHIKKIGHAGTLDPEVTGVLPIAIGQATKLIELMHTRP 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G G T ++D D ++Q + E E I+ A SF GEI QVPP++SA+KV
Sbjct: 65 KTYQGTGLFGYCTDSYDTDGKILQEKKLERPFSKEQIQAAMNSFLGEIEQVPPIYSAVKV 124
Query: 430 RVFHF 434
H
Sbjct: 125 NGKHL 129
>gi|283782788|ref|YP_003373542.1| tRNA pseudouridine synthase B [Gardnerella vaginalis 409-05]
gi|283441047|gb|ADB13513.1| tRNA pseudouridine synthase B [Gardnerella vaginalis 409-05]
Length = 367
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 81/140 (57%), Gaps = 17/140 (12%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P ++LV+KP+G TS + R L+ K+VGHAGTLDPMATGLLI+ G AT+L++
Sbjct: 4 PDSGLLLVDKPQGVTSHDIVACARHLLHTKRVGHAGTLDPMATGLLIIGFGNATRLLNYM 63
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQRE-----PWEHIKDEDI------------RKA 409
G K Y V RLGEAT+T DA+ ++ + P H+ ++D+ +
Sbjct: 64 LGHNKTYEAVIRLGEATTTDDAEGEILPDDALNIGPGVHVANKDMSFEKSLSFERIKQVV 123
Query: 410 AASFRGEIWQVPPMFSAIKV 429
+ + G+I Q P FSAIK+
Sbjct: 124 SENLVGKIMQAPTAFSAIKI 143
>gi|282899908|ref|ZP_06307869.1| tRNA pseudouridine synthase B [Cylindrospermopsis raciborskii
CS-505]
gi|281195178|gb|EFA70114.1| tRNA pseudouridine synthase B [Cylindrospermopsis raciborskii
CS-505]
Length = 291
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 71/116 (61%), Gaps = 1/116 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+NKP WTS ++R+L+++K+VGHAGTLDP ATG+L + +G+AT+L+ G K Y
Sbjct: 7 LNKPDNWTSHDCVARVRKLLRLKRVGHAGTLDPAATGVLPIALGRATRLLQFLPGN-KAY 65
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
R G T+T D V+ EP H+ DI + F G I Q+PP +SAI+V
Sbjct: 66 QATVRFGITTTTDDLQGEVLTCEPCPHLNLTDIEREIGQFTGLIQQIPPSYSAIQV 121
>gi|289432774|ref|YP_003462647.1| tRNA pseudouridine synthase B [Dehalococcoides sp. GT]
gi|288946494|gb|ADC74191.1| tRNA pseudouridine synthase B [Dehalococcoides sp. GT]
Length = 300
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 75/117 (64%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+NKP G TSF V K+RR+ K+VGH GTLDP ATG++ V +G++T+L++ + K Y
Sbjct: 7 INKPFGITSFDVVAKVRRIYSQKRVGHGGTLDPYATGVIPVFLGRSTRLIEYLSSVSKTY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVR 430
LG T ++D++ + R+ +++ E I K F+GEI Q+PPM+SA+K R
Sbjct: 67 LAEIELGVETDSYDSEGEITFRKTCDYVTREMIYKTLMDFQGEIIQIPPMYSAVKHR 123
>gi|166154315|ref|YP_001654433.1| tRNA pseudouridine synthase B [Chlamydia trachomatis 434/Bu]
gi|166155190|ref|YP_001653445.1| tRNA pseudouridine synthase B [Chlamydia trachomatis
L2b/UCH-1/proctitis]
gi|301335566|ref|ZP_07223810.1| tRNA pseudouridine synthase B [Chlamydia trachomatis L2tet1]
gi|339625746|ref|YP_004717225.1| tRNA pseudouridine synthase B [Chlamydia trachomatis L2c]
gi|226708663|sp|B0B9K2.1|TRUB_CHLT2 RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|226708665|sp|B0BB81.1|TRUB_CHLTB RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|165930303|emb|CAP03789.1| tRNA pseudouridine synthase B [Chlamydia trachomatis 434/Bu]
gi|165931178|emb|CAP06743.1| tRNA pseudouridine synthase B [Chlamydia trachomatis
L2b/UCH-1/proctitis]
gi|339460735|gb|AEJ77238.1| tRNA pseudouridine synthase B [Chlamydia trachomatis L2c]
gi|440525899|emb|CCP51383.1| tRNA pseudouridine synthase B [Chlamydia trachomatis L2b/8200/07]
gi|440535723|emb|CCP61236.1| tRNA pseudouridine synthase B [Chlamydia trachomatis L2b/795]
gi|440536613|emb|CCP62127.1| tRNA pseudouridine synthase B [Chlamydia trachomatis L1/440/LN]
gi|440537505|emb|CCP63019.1| tRNA pseudouridine synthase B [Chlamydia trachomatis L1/1322/p2]
gi|440538395|emb|CCP63909.1| tRNA pseudouridine synthase B [Chlamydia trachomatis L1/115]
gi|440539284|emb|CCP64798.1| tRNA pseudouridine synthase B [Chlamydia trachomatis L1/224]
gi|440540174|emb|CCP65688.1| tRNA pseudouridine synthase B [Chlamydia trachomatis L2/25667R]
gi|440541064|emb|CCP66578.1| tRNA pseudouridine synthase B [Chlamydia trachomatis L3/404/LN]
gi|440541952|emb|CCP67466.1| tRNA pseudouridine synthase B [Chlamydia trachomatis L2b/UCH-2]
gi|440542842|emb|CCP68356.1| tRNA pseudouridine synthase B [Chlamydia trachomatis L2b/Canada2]
gi|440543734|emb|CCP69248.1| tRNA pseudouridine synthase B [Chlamydia trachomatis L2b/LST]
gi|440544624|emb|CCP70138.1| tRNA pseudouridine synthase B [Chlamydia trachomatis L2b/Ams1]
gi|440545514|emb|CCP71028.1| tRNA pseudouridine synthase B [Chlamydia trachomatis L2b/CV204]
gi|440913776|emb|CCP90193.1| tRNA pseudouridine synthase B [Chlamydia trachomatis L2b/Ams2]
gi|440914666|emb|CCP91083.1| tRNA pseudouridine synthase B [Chlamydia trachomatis L2b/Ams3]
gi|440915558|emb|CCP91975.1| tRNA pseudouridine synthase B [Chlamydia trachomatis L2b/Canada1]
gi|440916451|emb|CCP92868.1| tRNA pseudouridine synthase B [Chlamydia trachomatis L2b/Ams4]
gi|440917341|emb|CCP93758.1| tRNA pseudouridine synthase B [Chlamydia trachomatis L2b/Ams5]
Length = 241
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/121 (46%), Positives = 78/121 (64%), Gaps = 2/121 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVG-KATKLVDRYQGM 369
++LV+KP+G TSF++ L RL+ VKK+GHAGTLDP ATG++++ +G K T+L D
Sbjct: 11 VLLVDKPQGRTSFSLIRSLVRLIGVKKIGHAGTLDPFATGVMVMLIGRKFTRLSDIMLFE 70
Query: 370 IKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ V LG T T+D D ++ R DE + + F+GEI QVPPMFSA KV
Sbjct: 71 DKEYAAVAHLGTTTDTYDCDGKIVGRSKKVPTMDE-VLTCTSYFQGEIQQVPPMFSAKKV 129
Query: 430 R 430
+
Sbjct: 130 Q 130
>gi|148380370|ref|YP_001254911.1| tRNA pseudouridine synthase B [Clostridium botulinum A str. ATCC
3502]
gi|153931964|ref|YP_001384590.1| tRNA pseudouridine synthase B [Clostridium botulinum A str. ATCC
19397]
gi|153937079|ref|YP_001388106.1| tRNA pseudouridine synthase B [Clostridium botulinum A str. Hall]
gi|148289854|emb|CAL83962.1| putative tRNA pseudouridine synthase B [Clostridium botulinum A
str. ATCC 3502]
gi|152928008|gb|ABS33508.1| tRNA pseudouridine synthase B [Clostridium botulinum A str. ATCC
19397]
gi|152932993|gb|ABS38492.1| tRNA pseudouridine synthase B [Clostridium botulinum A str. Hall]
Length = 289
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/116 (44%), Positives = 75/116 (64%), Gaps = 1/116 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V KPKG TSF V +R++ K+KKVGH GTLDP+A+G+L VC+GKATK+VD K Y
Sbjct: 7 VLKPKGITSFDVVRDIRKIAKIKKVGHTGTLDPLASGVLPVCIGKATKIVDYIMEGTKTY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
+LG T T+D + V++ + + E + + + G+I QVPPM+SA+K+
Sbjct: 67 RVEMKLGTTTDTYDREGTVLEEKEIDLTPIE-VEETIKKYIGDIDQVPPMYSALKI 121
>gi|402756196|ref|ZP_10858452.1| tRNA pseudouridine synthase B [Acinetobacter sp. NCTC 7422]
Length = 297
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 71/118 (60%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+ L+NKP G +S + K+RRL +K GH G LDP+ATGLL +C+G+ATK
Sbjct: 12 VFLLNKPLGLSSNSALQKVRRLFNAQKAGHTGALDPLATGLLPICLGEATKFSHYLLDSS 71
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y +LG+ T+T D + ++Q+ + E I + FRG+I QVPPM+SA+K
Sbjct: 72 KRYQTTVKLGQTTATGDVEGEILQQREVPALTQERIEQILEQFRGDIQQVPPMYSALK 129
>gi|420932223|ref|ZP_15395498.1| tRNA pseudouridine synthase B [Mycobacterium massiliense
1S-151-0930]
gi|420937930|ref|ZP_15401199.1| tRNA pseudouridine synthase B [Mycobacterium massiliense
1S-152-0914]
gi|420942480|ref|ZP_15405737.1| tRNA pseudouridine synthase B [Mycobacterium massiliense
1S-153-0915]
gi|420948011|ref|ZP_15411261.1| tRNA pseudouridine synthase B [Mycobacterium massiliense
1S-154-0310]
gi|420952739|ref|ZP_15415983.1| tRNA pseudouridine synthase B [Mycobacterium massiliense 2B-0626]
gi|420956909|ref|ZP_15420146.1| tRNA pseudouridine synthase B [Mycobacterium massiliense 2B-0107]
gi|420962308|ref|ZP_15425533.1| tRNA pseudouridine synthase B [Mycobacterium massiliense 2B-1231]
gi|420992865|ref|ZP_15456012.1| tRNA pseudouridine synthase B [Mycobacterium massiliense 2B-0307]
gi|420998719|ref|ZP_15461856.1| tRNA pseudouridine synthase B [Mycobacterium massiliense 2B-0912-R]
gi|421003156|ref|ZP_15466280.1| tRNA pseudouridine synthase B [Mycobacterium massiliense 2B-0912-S]
gi|392136982|gb|EIU62719.1| tRNA pseudouridine synthase B [Mycobacterium massiliense
1S-151-0930]
gi|392143445|gb|EIU69170.1| tRNA pseudouridine synthase B [Mycobacterium massiliense
1S-152-0914]
gi|392149907|gb|EIU75621.1| tRNA pseudouridine synthase B [Mycobacterium massiliense
1S-153-0915]
gi|392155041|gb|EIU80747.1| tRNA pseudouridine synthase B [Mycobacterium massiliense
1S-154-0310]
gi|392158051|gb|EIU83748.1| tRNA pseudouridine synthase B [Mycobacterium massiliense 2B-0626]
gi|392185649|gb|EIV11298.1| tRNA pseudouridine synthase B [Mycobacterium massiliense 2B-0307]
gi|392186531|gb|EIV12178.1| tRNA pseudouridine synthase B [Mycobacterium massiliense 2B-0912-R]
gi|392194614|gb|EIV20234.1| tRNA pseudouridine synthase B [Mycobacterium massiliense 2B-0912-S]
gi|392249773|gb|EIV75248.1| tRNA pseudouridine synthase B [Mycobacterium massiliense 2B-1231]
gi|392253808|gb|EIV79276.1| tRNA pseudouridine synthase B [Mycobacterium massiliense 2B-0107]
Length = 280
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/110 (45%), Positives = 68/110 (61%)
Query: 320 WTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRL 379
TS V + RR+ +KVGHAGTLDPMATG+L++ + +ATK++ K Y+ R
Sbjct: 1 MTSHDVVSRCRRIFSTRKVGHAGTLDPMATGVLVIGIERATKIMGLLTLTTKSYAATIRF 60
Query: 380 GEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
G++TST DA+ V+Q H+ + DI A A RG+I QVP SAIKV
Sbjct: 61 GQSTSTDDAEGEVLQTISASHLTEVDIEAAVAGLRGDIAQVPSSVSAIKV 110
>gi|421050117|ref|ZP_15513111.1| tRNA pseudouridine synthase B [Mycobacterium massiliense CCUG 48898
= JCM 15300]
gi|392238720|gb|EIV64213.1| tRNA pseudouridine synthase B [Mycobacterium massiliense CCUG
48898]
Length = 280
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/110 (45%), Positives = 68/110 (61%)
Query: 320 WTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRL 379
TS V + RR+ +KVGHAGTLDPMATG+L++ + +ATK++ K Y+ R
Sbjct: 1 MTSHDVVSRCRRIFSTRKVGHAGTLDPMATGVLVIGIERATKIMGLLTLTTKSYAATIRF 60
Query: 380 GEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
G++TST DA+ V+Q H+ + DI A A RG+I QVP SAIKV
Sbjct: 61 GQSTSTDDAEGEVLQTISASHLTEVDIEAAVAGLRGDIAQVPSSVSAIKV 110
>gi|196044668|ref|ZP_03111903.1| tRNA pseudouridine synthase B [Bacillus cereus 03BB108]
gi|229186047|ref|ZP_04313217.1| tRNA pseudouridine synthase B [Bacillus cereus BGSC 6E1]
gi|196024703|gb|EDX63375.1| tRNA pseudouridine synthase B [Bacillus cereus 03BB108]
gi|228597466|gb|EEK55116.1| tRNA pseudouridine synthase B [Bacillus cereus BGSC 6E1]
Length = 307
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 77/120 (64%), Gaps = 1/120 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + + I +++ A A+ G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETKHVDRVITRKEVEGALAALTGTIEQMPPMFSAVKV 123
>gi|126698912|ref|YP_001087809.1| transfer RNA pseudouridine synthase B [Clostridium difficile 630]
gi|255306272|ref|ZP_05350443.1| tRNA pseudouridine synthase B [Clostridium difficile ATCC 43255]
gi|423082297|ref|ZP_17070889.1| tRNA pseudouridine synthase B [Clostridium difficile 002-P50-2011]
gi|423087689|ref|ZP_17076075.1| tRNA pseudouridine synthase B [Clostridium difficile 050-P50-2011]
gi|423090902|ref|ZP_17079188.1| tRNA pseudouridine synthase B [Clostridium difficile 70-100-2010]
gi|123067081|sp|Q18BH7.1|TRUB_CLOD6 RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|115250349|emb|CAJ68171.1| transfer RNA pseudouridine synthase B [Clostridium difficile 630]
gi|357544003|gb|EHJ26009.1| tRNA pseudouridine synthase B [Clostridium difficile 050-P50-2011]
gi|357548623|gb|EHJ30483.1| tRNA pseudouridine synthase B [Clostridium difficile 002-P50-2011]
gi|357556017|gb|EHJ37639.1| tRNA pseudouridine synthase B [Clostridium difficile 70-100-2010]
Length = 301
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 77/119 (64%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + KP G TS V ++R+++ +KKVGH GTLDP A+G+L +C+GKATK+ +
Sbjct: 4 IISILKPTGMTSHDVVSRVRKILNIKKVGHTGTLDPDASGVLPICIGKATKVCEVILNKD 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y LG +T T+DA ++++ +EDI +A + RGEI Q+PP++SA+KV
Sbjct: 64 KSYICELTLGISTDTYDASGEILKKVDDFKFSNEDIERAFDTQRGEINQLPPIYSALKV 122
>gi|228954086|ref|ZP_04116115.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|229071308|ref|ZP_04204531.1| tRNA pseudouridine synthase B [Bacillus cereus F65185]
gi|229081065|ref|ZP_04213575.1| tRNA pseudouridine synthase B [Bacillus cereus Rock4-2]
gi|229180086|ref|ZP_04307430.1| tRNA pseudouridine synthase B [Bacillus cereus 172560W]
gi|229191979|ref|ZP_04318949.1| tRNA pseudouridine synthase B [Bacillus cereus ATCC 10876]
gi|365159413|ref|ZP_09355594.1| tRNA pseudouridine synthase B [Bacillus sp. 7_6_55CFAA_CT2]
gi|423412385|ref|ZP_17389505.1| tRNA pseudouridine synthase B [Bacillus cereus BAG3O-2]
gi|423425946|ref|ZP_17402977.1| tRNA pseudouridine synthase B [Bacillus cereus BAG3X2-2]
gi|423431830|ref|ZP_17408834.1| tRNA pseudouridine synthase B [Bacillus cereus BAG4O-1]
gi|423437265|ref|ZP_17414246.1| tRNA pseudouridine synthase B [Bacillus cereus BAG4X12-1]
gi|423503513|ref|ZP_17480105.1| tRNA pseudouridine synthase B [Bacillus cereus HD73]
gi|449090751|ref|YP_007423192.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar
kurstaki str. HD73]
gi|228591530|gb|EEK49379.1| tRNA pseudouridine synthase B [Bacillus cereus ATCC 10876]
gi|228603295|gb|EEK60772.1| tRNA pseudouridine synthase B [Bacillus cereus 172560W]
gi|228702109|gb|EEL54585.1| tRNA pseudouridine synthase B [Bacillus cereus Rock4-2]
gi|228711762|gb|EEL63714.1| tRNA pseudouridine synthase B [Bacillus cereus F65185]
gi|228805652|gb|EEM52242.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|363625411|gb|EHL76452.1| tRNA pseudouridine synthase B [Bacillus sp. 7_6_55CFAA_CT2]
gi|401104453|gb|EJQ12430.1| tRNA pseudouridine synthase B [Bacillus cereus BAG3O-2]
gi|401110693|gb|EJQ18592.1| tRNA pseudouridine synthase B [Bacillus cereus BAG3X2-2]
gi|401116586|gb|EJQ24424.1| tRNA pseudouridine synthase B [Bacillus cereus BAG4O-1]
gi|401120420|gb|EJQ28216.1| tRNA pseudouridine synthase B [Bacillus cereus BAG4X12-1]
gi|402458867|gb|EJV90607.1| tRNA pseudouridine synthase B [Bacillus cereus HD73]
gi|449024508|gb|AGE79671.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar
kurstaki str. HD73]
Length = 307
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 76/120 (63%), Gaps = 1/120 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + + I +++ K A G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETKNVDRTITRKEVEKVLAELTGTIEQMPPMFSAVKV 123
>gi|196042147|ref|ZP_03109430.1| tRNA pseudouridine synthase B [Bacillus cereus NVH0597-99]
gi|196026999|gb|EDX65623.1| tRNA pseudouridine synthase B [Bacillus cereus NVH0597-99]
Length = 307
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 77/120 (64%), Gaps = 1/120 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + + I +++ A A+ G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETKHVDRVITRKEVEGALATLTGTIEQMPPMFSAVKV 123
>gi|73748748|ref|YP_307987.1| tRNA pseudouridine synthase B [Dehalococcoides sp. CBDB1]
gi|452203734|ref|YP_007483867.1| tRNA pseudouridine synthase B [Dehalococcoides mccartyi DCMB5]
gi|91208078|sp|Q3ZXU5.1|TRUB_DEHSC RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|73660464|emb|CAI83071.1| tRNA pseudouridine synthase B [Dehalococcoides sp. CBDB1]
gi|452110793|gb|AGG06525.1| tRNA pseudouridine synthase B [Dehalococcoides mccartyi DCMB5]
Length = 300
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 75/117 (64%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+NKP G TSF V K+RR+ K+VGH GTLDP ATG++ V +G++T+L++ + K Y
Sbjct: 7 INKPFGITSFDVVAKVRRIYSQKRVGHGGTLDPYATGVIPVFLGRSTRLIEYLSSVSKTY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVR 430
LG T ++D++ + R+ +++ E I K F+GEI Q+PPM+SA+K R
Sbjct: 67 LAEIELGVETDSYDSEGEITFRKTCDYVTREMIYKTLMDFQGEIIQIPPMYSAVKHR 123
>gi|334146562|ref|YP_004509489.1| putative tRNA pseudouridine synthase B [Porphyromonas gingivalis
TDC60]
gi|333803716|dbj|BAK24923.1| putative tRNA pseudouridine synthase B [Porphyromonas gingivalis
TDC60]
Length = 258
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/127 (41%), Positives = 76/127 (59%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ +KP WTSF + K R R + +KK VGHAGTLDP+A+G++I+C G+ATK
Sbjct: 13 GEVLYFDKPLTWTSFDLVNKFRYRACRRMGIKKLRVGHAGTLDPLASGVMILCTGRATKQ 72
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+D Q K Y RLG T ++D ++ P+EHI + + F G I QVPP
Sbjct: 73 IDVLQAGTKEYIATIRLGATTPSFDKETEPDAFFPYEHITRQSVLDILPRFTGTIEQVPP 132
Query: 423 MFSAIKV 429
+FSA++V
Sbjct: 133 IFSAVRV 139
>gi|254974859|ref|ZP_05271331.1| tRNA pseudouridine synthase B [Clostridium difficile QCD-66c26]
gi|255092246|ref|ZP_05321724.1| tRNA pseudouridine synthase B [Clostridium difficile CIP 107932]
gi|255313986|ref|ZP_05355569.1| tRNA pseudouridine synthase B [Clostridium difficile QCD-76w55]
gi|255516666|ref|ZP_05384342.1| tRNA pseudouridine synthase B [Clostridium difficile QCD-97b34]
gi|255649765|ref|ZP_05396667.1| tRNA pseudouridine synthase B [Clostridium difficile QCD-37x79]
gi|260682921|ref|YP_003214206.1| tRNA pseudouridine synthase B [Clostridium difficile CD196]
gi|260686519|ref|YP_003217652.1| tRNA pseudouridine synthase B [Clostridium difficile R20291]
gi|306519870|ref|ZP_07406217.1| tRNA pseudouridine synthase B [Clostridium difficile QCD-32g58]
gi|384360509|ref|YP_006198361.1| tRNA pseudouridine synthase B [Clostridium difficile BI1]
gi|260209084|emb|CBA62234.1| tRNA pseudouridine synthase B [Clostridium difficile CD196]
gi|260212535|emb|CBE03491.1| tRNA pseudouridine synthase B [Clostridium difficile R20291]
Length = 301
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 77/119 (64%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + KP G TS V ++R+++ +KKVGH GTLDP A+G+L +C+GKATK+ +
Sbjct: 4 IISILKPTGMTSHDVVSRVRKILNIKKVGHTGTLDPDASGVLPICIGKATKVCEVILNKD 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y LG +T T+DA ++++ +EDI +A + RGEI Q+PP++SA+KV
Sbjct: 64 KSYICELTLGISTDTYDASGEILKKVDDFKFSNEDIERAFDTQRGEINQLPPIYSALKV 122
>gi|452205228|ref|YP_007485357.1| tRNA pseudouridine synthase B [Dehalococcoides mccartyi BTF08]
gi|452112284|gb|AGG08015.1| tRNA pseudouridine synthase B [Dehalococcoides mccartyi BTF08]
Length = 300
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 75/117 (64%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+NKP G TSF V K+RR+ K+VGH GTLDP ATG++ V +G++T+L++ + K Y
Sbjct: 7 INKPFGVTSFDVVAKVRRIYSQKRVGHGGTLDPYATGVIPVFLGRSTRLIEYLSSVSKTY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVR 430
LG T ++D++ + R+ +++ E I K F+GEI Q+PPM+SA+K R
Sbjct: 67 LAEIELGVETDSYDSEGEITFRKTCDYVTREMIYKTLMDFQGEIIQIPPMYSAVKHR 123
>gi|421452440|ref|ZP_15901801.1| tRNA pseudouridine synthase B [Streptococcus salivarius K12]
gi|400182871|gb|EJO17133.1| tRNA pseudouridine synthase B [Streptococcus salivarius K12]
Length = 293
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 74/119 (62%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR+++ KK+GH GTLDP TG+L + +GKAT++++
Sbjct: 5 IINLKKEAGMTSHDAVFKLRKILHEKKIGHGGTLDPDVTGVLPIAIGKATRVIEYMTEAG 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G +G +T+T DA V+Q P + +E + A ASF GEI Q+PPM+SA+KV
Sbjct: 65 KVYEGEITIGFSTTTEDASGDVVQTTPVTELDEETVDMAMASFEGEITQIPPMYSAVKV 123
>gi|350567623|ref|ZP_08936031.1| tRNA pseudouridine synthase B [Propionibacterium avidum ATCC 25577]
gi|348662386|gb|EGY79049.1| tRNA pseudouridine synthase B [Propionibacterium avidum ATCC 25577]
Length = 298
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 75/125 (60%), Gaps = 1/125 (0%)
Query: 305 DGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVD 364
D P G +V V+KP G TS V G++RRL+ +KVGHAGTLDPMATG+L+V V +AT+L+
Sbjct: 6 DVPSGVLV-VDKPAGVTSHQVVGRVRRLMGTRKVGHAGTLDPMATGVLVVGVNRATRLLG 64
Query: 365 RYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMF 424
K Y+ +LG +T T DA+ I DE I A A GEI QVP
Sbjct: 65 HLSLQDKDYTATMKLGVSTVTDDAEGDSTGAIDASGIDDEAIIAAMARQTGEIQQVPTAV 124
Query: 425 SAIKV 429
SAIK+
Sbjct: 125 SAIKI 129
>gi|302023885|ref|ZP_07249096.1| tRNA pseudouridine synthase B [Streptococcus suis 05HAS68]
Length = 292
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 77/119 (64%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ V K G TS V KLR++++ KK+GH GTLDP TG+L + VGKAT++++ Q
Sbjct: 5 IINVKKEAGMTSHDVVFKLRKILQEKKIGHGGTLDPDVTGVLPIAVGKATRMIEYMQEEG 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T D+ +++R P I ++ + +A SF G I Q+PPM+SA+KV
Sbjct: 65 KIYEGEITLGFSTTTEDSSGDLVERTPVLDIAEQAVDEAMTSFVGTITQIPPMYSAVKV 123
>gi|261364590|ref|ZP_05977473.1| tRNA pseudouridine synthase B [Neisseria mucosa ATCC 25996]
gi|288567174|gb|EFC88734.1| tRNA pseudouridine synthase B [Neisseria mucosa ATCC 25996]
Length = 304
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 73/122 (59%), Gaps = 1/122 (0%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P ++L++KP+G +S T K RRL +K GH G LDP+ATGLL VC G+ATK
Sbjct: 9 PVNGVLLLDKPEGLSSNTSLQKARRLYNAEKAGHTGVLDPLATGLLPVCFGEATKFAQYL 68
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
K Y+ +LGEA+ST DA+ +I + I + + A + G+I QVPPMFSA
Sbjct: 69 LDADKAYTATLKLGEASSTGDAEGEIIATARAD-ISLAEFQTACQALTGDIRQVPPMFSA 127
Query: 427 IK 428
+K
Sbjct: 128 LK 129
>gi|228922564|ref|ZP_04085864.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|423635419|ref|ZP_17611072.1| tRNA pseudouridine synthase B [Bacillus cereus VD156]
gi|228836993|gb|EEM82334.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|401278170|gb|EJR84106.1| tRNA pseudouridine synthase B [Bacillus cereus VD156]
Length = 307
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 76/120 (63%), Gaps = 1/120 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + + I +++ K A G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETKNVDRTITRKEVEKVLAELTGTIEQMPPMFSAVKV 123
>gi|134102366|ref|YP_001108027.1| hypothetical protein SACE_5919 [Saccharopolyspora erythraea NRRL
2338]
gi|133914989|emb|CAM05102.1| hypothetical protein SACE_5919 [Saccharopolyspora erythraea NRRL
2338]
Length = 536
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 72/117 (61%)
Query: 313 LVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKG 372
+V+KP G TS V ++RR++ +KVGHAGTLDPMATG+L++ + +ATKL+ K
Sbjct: 1 MVDKPAGMTSHDVVARVRRIMGTRKVGHAGTLDPMATGVLVLGLERATKLLGHLAMDTKA 60
Query: 373 YSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
Y RLG AT+T DA+ V+ + ++ +R A GE+ QVP SA+KV
Sbjct: 61 YLATIRLGAATTTDDAEGEVLSEADASEVAEDAVRAGVAELTGELQQVPSSVSAVKV 117
>gi|49478389|ref|YP_037871.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|118479030|ref|YP_896181.1| tRNA pseudouridine synthase B [Bacillus thuringiensis str. Al
Hakam]
gi|225865789|ref|YP_002751167.1| tRNA pseudouridine synthase B [Bacillus cereus 03BB102]
gi|301055300|ref|YP_003793511.1| tRNA pseudouridine synthase B [Bacillus cereus biovar anthracis
str. CI]
gi|376267704|ref|YP_005120416.1| tRNA pseudouridine synthase B [Bacillus cereus F837/76]
gi|54036479|sp|Q6HF05.1|TRUB_BACHK RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|189030157|sp|A0RHI1.1|TRUB_BACAH RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|49329945|gb|AAT60591.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|118418255|gb|ABK86674.1| tRNA pseudouridine synthase B [Bacillus thuringiensis str. Al
Hakam]
gi|225786358|gb|ACO26575.1| tRNA pseudouridine synthase B [Bacillus cereus 03BB102]
gi|300377469|gb|ADK06373.1| tRNA pseudouridine synthase B [Bacillus cereus biovar anthracis
str. CI]
gi|364513504|gb|AEW56903.1| tRNA pseudouridine synthase B [Bacillus cereus F837/76]
Length = 307
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 77/120 (64%), Gaps = 1/120 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + + I +++ A A+ G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETKHVDRVITRKEVEGALAALTGTIEQMPPMFSAVKV 123
>gi|296122474|ref|YP_003630252.1| tRNA pseudouridine synthase B [Planctomyces limnophilus DSM 3776]
gi|296014814|gb|ADG68053.1| tRNA pseudouridine synthase B [Planctomyces limnophilus DSM 3776]
Length = 313
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 72/116 (62%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
++KP TS V K+ R V+ KVGHAGTLDP+A G+L++ +G AT+L + Q + KGY
Sbjct: 8 IHKPLRMTSRDVVSKIERAVRPLKVGHAGTLDPLAEGVLVIGIGPATRLTEHVQALPKGY 67
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
S F LG+ T T DA+ + + +H+ E I + F G+I Q+PP FSA+ V
Sbjct: 68 SATFHLGQTTETDDAEGQLSTQVDTQHLTRELIEQELTHFCGQIQQIPPRFSAVHV 123
>gi|420864515|ref|ZP_15327905.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 4S-0303]
gi|420869306|ref|ZP_15332688.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 4S-0726-RA]
gi|420873750|ref|ZP_15337127.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 4S-0726-RB]
gi|420910729|ref|ZP_15374041.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 6G-0125-R]
gi|420917180|ref|ZP_15380484.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 6G-0125-S]
gi|420922345|ref|ZP_15385642.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 6G-0728-S]
gi|420928008|ref|ZP_15391290.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 6G-1108]
gi|420967617|ref|ZP_15430821.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 3A-0810-R]
gi|420978348|ref|ZP_15441526.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 6G-0212]
gi|420983733|ref|ZP_15446900.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 6G-0728-R]
gi|420989346|ref|ZP_15452502.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 4S-0206]
gi|421007585|ref|ZP_15470696.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 3A-0119-R]
gi|421013701|ref|ZP_15476782.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 3A-0122-R]
gi|421018649|ref|ZP_15481707.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 3A-0122-S]
gi|421024922|ref|ZP_15487966.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 3A-0731]
gi|421029769|ref|ZP_15492801.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 3A-0930-R]
gi|421035077|ref|ZP_15498097.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 3A-0930-S]
gi|421039873|ref|ZP_15502882.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 4S-0116-R]
gi|421044105|ref|ZP_15507106.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 4S-0116-S]
gi|392068776|gb|EIT94623.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 4S-0726-RA]
gi|392071490|gb|EIT97336.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 4S-0303]
gi|392072778|gb|EIT98619.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 4S-0726-RB]
gi|392112723|gb|EIU38492.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 6G-0125-R]
gi|392121320|gb|EIU47086.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 6G-0125-S]
gi|392132181|gb|EIU57927.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 6G-0728-S]
gi|392135241|gb|EIU60982.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 6G-1108]
gi|392166622|gb|EIU92307.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 6G-0212]
gi|392168729|gb|EIU94407.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 6G-0728-R]
gi|392183625|gb|EIV09276.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 4S-0206]
gi|392199038|gb|EIV24648.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 3A-0119-R]
gi|392202049|gb|EIV27647.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 3A-0122-R]
gi|392208524|gb|EIV34098.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 3A-0122-S]
gi|392211719|gb|EIV37285.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 3A-0731]
gi|392224521|gb|EIV50041.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 3A-0930-R]
gi|392224965|gb|EIV50484.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 4S-0116-R]
gi|392225809|gb|EIV51324.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 3A-0930-S]
gi|392237957|gb|EIV63451.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 4S-0116-S]
gi|392250124|gb|EIV75598.1| tRNA pseudouridine synthase B [Mycobacterium abscessus 3A-0810-R]
Length = 280
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/110 (45%), Positives = 68/110 (61%)
Query: 320 WTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRL 379
TS V + RR+ +KVGHAGTLDPMATG+L++ + +ATK++ K Y+ R
Sbjct: 1 MTSHDVVSRCRRIFSTRKVGHAGTLDPMATGVLVIGIERATKIMGLLTLTTKSYAATIRF 60
Query: 380 GEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
G++TST DA+ V+Q H+ + DI A A RG+I QVP SAIKV
Sbjct: 61 GQSTSTDDAEGEVLQTISASHLTEVDIEAAVAGLRGDIAQVPSSVSAIKV 110
>gi|320094038|ref|ZP_08025861.1| tRNA pseudouridine synthase B, partial [Actinomyces sp. oral taxon
178 str. F0338]
gi|319979027|gb|EFW10547.1| tRNA pseudouridine synthase B [Actinomyces sp. oral taxon 178 str.
F0338]
Length = 133
Score = 103 bits (256), Expect = 2e-19, Method: Composition-based stats.
Identities = 53/125 (42%), Positives = 71/125 (56%)
Query: 305 DGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVD 364
D P +V+++KP+G TS ++RR + +K GHAGTLDPMATG+L+V +GKATKL+
Sbjct: 6 DNPRPGLVVIDKPQGITSHDAVSRVRRTARTRKAGHAGTLDPMATGVLVVGIGKATKLLT 65
Query: 365 RYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMF 424
G K Y R G +T T DA+ H+ + A RG+I QVP
Sbjct: 66 WVSGDTKSYEATIRFGASTRTDDAEGETTSAPGCSHLDATALGAAFERLRGDIMQVPSAV 125
Query: 425 SAIKV 429
SAIKV
Sbjct: 126 SAIKV 130
>gi|229012993|ref|ZP_04170158.1| tRNA pseudouridine synthase B [Bacillus mycoides DSM 2048]
gi|229061413|ref|ZP_04198758.1| tRNA pseudouridine synthase B [Bacillus cereus AH603]
gi|229168549|ref|ZP_04296272.1| tRNA pseudouridine synthase B [Bacillus cereus AH621]
gi|423488985|ref|ZP_17465667.1| tRNA pseudouridine synthase B [Bacillus cereus BtB2-4]
gi|423494710|ref|ZP_17471354.1| tRNA pseudouridine synthase B [Bacillus cereus CER057]
gi|423498498|ref|ZP_17475115.1| tRNA pseudouridine synthase B [Bacillus cereus CER074]
gi|423592194|ref|ZP_17568225.1| tRNA pseudouridine synthase B [Bacillus cereus VD048]
gi|423598879|ref|ZP_17574879.1| tRNA pseudouridine synthase B [Bacillus cereus VD078]
gi|423661351|ref|ZP_17636520.1| tRNA pseudouridine synthase B [Bacillus cereus VDM022]
gi|228614955|gb|EEK72057.1| tRNA pseudouridine synthase B [Bacillus cereus AH621]
gi|228717836|gb|EEL69484.1| tRNA pseudouridine synthase B [Bacillus cereus AH603]
gi|228748247|gb|EEL98107.1| tRNA pseudouridine synthase B [Bacillus mycoides DSM 2048]
gi|401150803|gb|EJQ58255.1| tRNA pseudouridine synthase B [Bacillus cereus CER057]
gi|401160547|gb|EJQ67925.1| tRNA pseudouridine synthase B [Bacillus cereus CER074]
gi|401232327|gb|EJR38829.1| tRNA pseudouridine synthase B [Bacillus cereus VD048]
gi|401237149|gb|EJR43606.1| tRNA pseudouridine synthase B [Bacillus cereus VD078]
gi|401301392|gb|EJS06981.1| tRNA pseudouridine synthase B [Bacillus cereus VDM022]
gi|402432233|gb|EJV64292.1| tRNA pseudouridine synthase B [Bacillus cereus BtB2-4]
Length = 307
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 76/120 (63%), Gaps = 1/120 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++++ I +++ + A G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVEKQDVNRVITRKEVEEVLAELTGTIEQMPPMFSAVKV 123
>gi|94969230|ref|YP_591278.1| tRNA pseudouridine synthase B [Candidatus Koribacter versatilis
Ellin345]
gi|94551280|gb|ABF41204.1| tRNA pseudouridine synthase B [Candidatus Koribacter versatilis
Ellin345]
Length = 302
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 74/123 (60%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P +++++KP GWTS V +LRR++ + GH GTLDPMATG+L V +G+ T+L Y
Sbjct: 2 PLDAVLVIDKPAGWTSHDVVARLRRVLSERSAGHLGTLDPMATGVLPVVLGRYTRLSQFY 61
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
K Y G R G AT+T+DA+ + + E +R+A+ F G + Q+PP FSA
Sbjct: 62 NHSEKSYEGEIRFGFATNTYDAEGETVGEAQTVQVALEGVREASREFVGPLSQLPPPFSA 121
Query: 427 IKV 429
K+
Sbjct: 122 KKI 124
>gi|229117296|ref|ZP_04246674.1| tRNA pseudouridine synthase B [Bacillus cereus Rock1-3]
gi|423378351|ref|ZP_17355635.1| tRNA pseudouridine synthase B [Bacillus cereus BAG1O-2]
gi|423547094|ref|ZP_17523452.1| tRNA pseudouridine synthase B [Bacillus cereus HuB5-5]
gi|423623114|ref|ZP_17598892.1| tRNA pseudouridine synthase B [Bacillus cereus VD148]
gi|228666196|gb|EEL21660.1| tRNA pseudouridine synthase B [Bacillus cereus Rock1-3]
gi|401178815|gb|EJQ85988.1| tRNA pseudouridine synthase B [Bacillus cereus HuB5-5]
gi|401259887|gb|EJR66061.1| tRNA pseudouridine synthase B [Bacillus cereus VD148]
gi|401636617|gb|EJS54371.1| tRNA pseudouridine synthase B [Bacillus cereus BAG1O-2]
Length = 307
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 75/120 (62%), Gaps = 1/120 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+ I
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSEI 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + I +++ A+ G I Q PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETTNVDRSITRKEVEGVLAALTGTIEQTPPMFSAVKV 123
>gi|269469000|gb|EEZ80568.1| pseudouridine synthase [uncultured SUP05 cluster bacterium]
Length = 199
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 77/118 (65%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++K G +S K++RL KK GH G LDP+A+G+L +C+G+ATK+
Sbjct: 14 IVLLDKDTGLSSNAALQKVKRLFFAKKAGHTGALDPLASGILPICLGQATKVAGFLLDDD 73
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y +LGE + T D + +IQ +P+EH+ + ++ +A SF+G+I QVPPM+SA+K
Sbjct: 74 KRYFVRGKLGETSDTLDCEGEIIQTQPFEHLSEAEVIEATMSFKGDILQVPPMYSALK 131
>gi|255100335|ref|ZP_05329312.1| tRNA pseudouridine synthase B [Clostridium difficile QCD-63q42]
Length = 301
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 77/119 (64%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + KP G TS V ++R+++ +KKVGH GTLDP A+G+L +C+GKATK+ +
Sbjct: 4 IISILKPTGMTSHDVVSRVRKILNIKKVGHTGTLDPDASGVLPICIGKATKVCEVILNKD 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y LG +T T+DA ++++ +EDI +A + RGEI Q+PP++SA+KV
Sbjct: 64 KSYICELTLGISTDTYDASGEILKKVDDFKFSNEDIERAFDTQRGEINQLPPIYSALKV 122
>gi|15604813|ref|NP_219597.1| tRNA pseudouridine synthase B [Chlamydia trachomatis D/UW-3/CX]
gi|237802526|ref|YP_002887720.1| tRNA pseudouridine synthase B [Chlamydia trachomatis B/Jali20/OT]
gi|237804443|ref|YP_002888597.1| tRNA pseudouridine synthase B [Chlamydia trachomatis B/TZ1A828/OT]
gi|255348456|ref|ZP_05380463.1| tRNA pseudouridine synthase B [Chlamydia trachomatis 70]
gi|255502998|ref|ZP_05381388.1| tRNA pseudouridine synthase B [Chlamydia trachomatis 70s]
gi|255506669|ref|ZP_05382308.1| tRNA pseudouridine synthase B [Chlamydia trachomatis D(s)2923]
gi|376282103|ref|YP_005155929.1| tRNA pseudouridine synthase B [Chlamydia trachomatis A2497]
gi|385239606|ref|YP_005807448.1| tRNA pseudouridine synthase B [Chlamydia trachomatis G/9768]
gi|385240526|ref|YP_005808367.1| tRNA pseudouridine synthase B [Chlamydia trachomatis G/11222]
gi|385241456|ref|YP_005809296.1| tRNA pseudouridine synthase B [Chlamydia trachomatis E/11023]
gi|385242382|ref|YP_005810221.1| tRNA pseudouridine synthase B [Chlamydia trachomatis G/9301]
gi|385243300|ref|YP_005811146.1| tRNA pseudouridine synthase B [Chlamydia trachomatis D-EC]
gi|385244180|ref|YP_005812024.1| tRNA pseudouridine synthase B [Chlamydia trachomatis D-LC]
gi|385245066|ref|YP_005813889.1| tRNA pseudouridine synthase B [Chlamydia trachomatis E/150]
gi|385245992|ref|YP_005814814.1| tRNA pseudouridine synthase B [Chlamydia trachomatis G/11074]
gi|385269745|ref|YP_005812905.1| tRNA pseudouridine synthase B [Chlamydia trachomatis A2497]
gi|386262450|ref|YP_005815729.1| tRNA pseudouridine synthase B [Chlamydia trachomatis Sweden2]
gi|389857791|ref|YP_006360033.1| tRNA pseudouridine synthase B [Chlamydia trachomatis F/SW4]
gi|389858664|ref|YP_006360905.1| tRNA pseudouridine synthase B [Chlamydia trachomatis E/SW3]
gi|389859541|ref|YP_006361781.1| tRNA pseudouridine synthase B [Chlamydia trachomatis F/SW5]
gi|13959588|sp|O84096.1|TRUB_CHLTR RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|3328490|gb|AAC67685.1| tRNA Pseudouridine Synthase [Chlamydia trachomatis D/UW-3/CX]
gi|231272743|emb|CAX09647.1| tRNA pseudouridine synthase B [Chlamydia trachomatis B/TZ1A828/OT]
gi|231273760|emb|CAX10541.1| tRNA pseudouridine synthase B [Chlamydia trachomatis B/Jali20/OT]
gi|289525138|emb|CBJ14610.1| tRNA pseudouridine synthase B [Chlamydia trachomatis Sweden2]
gi|296434682|gb|ADH16860.1| tRNA pseudouridine synthase B [Chlamydia trachomatis E/150]
gi|296435611|gb|ADH17785.1| tRNA pseudouridine synthase B [Chlamydia trachomatis G/9768]
gi|296436534|gb|ADH18704.1| tRNA pseudouridine synthase B [Chlamydia trachomatis G/11222]
gi|296437471|gb|ADH19632.1| tRNA pseudouridine synthase B [Chlamydia trachomatis G/11074]
gi|296438399|gb|ADH20552.1| tRNA pseudouridine synthase B [Chlamydia trachomatis E/11023]
gi|297139970|gb|ADH96728.1| tRNA pseudouridine synthase B [Chlamydia trachomatis G/9301]
gi|297748223|gb|ADI50769.1| tRNA pseudouridine synthase B [Chlamydia trachomatis D-EC]
gi|297749103|gb|ADI51781.1| tRNA pseudouridine synthase B [Chlamydia trachomatis D-LC]
gi|347974885|gb|AEP34906.1| tRNA pseudouridine synthase B [Chlamydia trachomatis A2497]
gi|371908133|emb|CAX08753.1| tRNA pseudouridine synthase B [Chlamydia trachomatis A2497]
gi|380248861|emb|CCE14148.1| tRNA pseudouridine synthase B [Chlamydia trachomatis F/SW5]
gi|380249738|emb|CCE13259.1| tRNA pseudouridine synthase B [Chlamydia trachomatis F/SW4]
gi|380250613|emb|CCE12370.1| tRNA pseudouridine synthase B [Chlamydia trachomatis E/SW3]
gi|438690011|emb|CCP49268.1| tRNA pseudouridine synthase B [Chlamydia trachomatis A/7249]
gi|438691095|emb|CCP48369.1| tRNA pseudouridine synthase B [Chlamydia trachomatis A/5291]
gi|438692468|emb|CCP47470.1| tRNA pseudouridine synthase B [Chlamydia trachomatis A/363]
gi|440525008|emb|CCP50259.1| tRNA pseudouridine synthase B [Chlamydia trachomatis K/SotonK1]
gi|440526790|emb|CCP52274.1| tRNA pseudouridine synthase B [Chlamydia trachomatis D/SotonD1]
gi|440527684|emb|CCP53168.1| tRNA pseudouridine synthase B [Chlamydia trachomatis D/SotonD5]
gi|440528575|emb|CCP54059.1| tRNA pseudouridine synthase B [Chlamydia trachomatis D/SotonD6]
gi|440529466|emb|CCP54950.1| tRNA pseudouridine synthase B [Chlamydia trachomatis E/SotonE4]
gi|440530359|emb|CCP55843.1| tRNA pseudouridine synthase B [Chlamydia trachomatis E/SotonE8]
gi|440531256|emb|CCP56766.1| tRNA pseudouridine synthase B [Chlamydia trachomatis F/SotonF3]
gi|440532147|emb|CCP57657.1| tRNA pseudouridine synthase B [Chlamydia trachomatis G/SotonG1]
gi|440534828|emb|CCP60338.1| tRNA pseudouridine synthase B [Chlamydia trachomatis E/Bour]
Length = 241
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/121 (46%), Positives = 78/121 (64%), Gaps = 2/121 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVG-KATKLVDRYQGM 369
++LV+KP+G TSF++ L RL+ VKK+GHAGTLDP ATG++++ +G K T+L D
Sbjct: 11 VLLVDKPQGRTSFSLIRSLVRLIGVKKIGHAGTLDPFATGVMVMLIGRKFTRLSDIMLFE 70
Query: 370 IKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ V LG T T+D D ++ R DE + + F+GEI QVPPMFSA KV
Sbjct: 71 DKEYAAVAHLGTTTDTYDCDGKIVGRSKKVPTMDE-VLTCTSYFQGEIQQVPPMFSAKKV 129
Query: 430 R 430
+
Sbjct: 130 Q 130
>gi|419966268|ref|ZP_14482199.1| tRNA pseudouridine synthase B [Rhodococcus opacus M213]
gi|414568358|gb|EKT79120.1| tRNA pseudouridine synthase B [Rhodococcus opacus M213]
Length = 305
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 74/119 (62%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+K G TS V + R+L+ +KVGHAGTLDPMATG+L++ V +ATKL+
Sbjct: 16 LLIVDKDAGVTSHDVVARCRKLLGTRKVGHAGTLDPMATGVLVLGVERATKLLGLLALTT 75
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ RLG+AT+T DA+ V+ + DE+I + G+I Q+P SAIKV
Sbjct: 76 KAYTATIRLGQATTTDDAEGEVVASADASGMTDEEIAAQVHTLTGDIQQIPSSVSAIKV 134
>gi|229174476|ref|ZP_04302008.1| tRNA pseudouridine synthase B [Bacillus cereus MM3]
gi|423401348|ref|ZP_17378521.1| tRNA pseudouridine synthase B [Bacillus cereus BAG2X1-2]
gi|423477948|ref|ZP_17454663.1| tRNA pseudouridine synthase B [Bacillus cereus BAG6X1-1]
gi|228609036|gb|EEK66326.1| tRNA pseudouridine synthase B [Bacillus cereus MM3]
gi|401654338|gb|EJS71881.1| tRNA pseudouridine synthase B [Bacillus cereus BAG2X1-2]
gi|402428110|gb|EJV60207.1| tRNA pseudouridine synthase B [Bacillus cereus BAG6X1-1]
Length = 307
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 77/120 (64%), Gaps = 1/120 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + + I +++ A A+ G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETKNVDRVITRKEVEGALAALTGTIEQMPPMFSAVKV 123
>gi|226185243|dbj|BAH33347.1| tRNA pseudouridine synthase TruB [Rhodococcus erythropolis PR4]
Length = 306
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 72/119 (60%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+K G TS V + R+L+ +KVGHAGTLDPMATG+L++ V +ATKL+
Sbjct: 16 ILIVDKEAGITSHDVVARCRKLLNTRKVGHAGTLDPMATGVLVLGVERATKLLGLLALTT 75
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K YS RLG AT T DA+ V+ + D +I A+ G+I Q+P SAIKV
Sbjct: 76 KAYSATIRLGAATDTDDAEGEVLTSADASQVTDAEIAAIVATLTGDIKQIPASVSAIKV 134
>gi|282897957|ref|ZP_06305952.1| tRNA pseudouridine synthase B [Raphidiopsis brookii D9]
gi|281197101|gb|EFA72002.1| tRNA pseudouridine synthase B [Raphidiopsis brookii D9]
Length = 308
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 73/116 (62%), Gaps = 1/116 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+NKP WTS ++R+L+++K+VGHAGTLDP ATG+L + +G+AT+L+ ++ K Y
Sbjct: 24 LNKPDNWTSHDCVARVRKLLRLKRVGHAGTLDPAATGVLPIALGRATRLL-QFLPSNKAY 82
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
R G T+T D V+ EP H+K DI + F G I Q+PP +SAI+V
Sbjct: 83 QATVRFGITTTTDDLQGEVLTCEPCPHLKLTDIEREIGQFIGLIQQIPPRYSAIQV 138
>gi|126727801|ref|ZP_01743631.1| tRNA pseudouridine synthase B [Rhodobacterales bacterium HTCC2150]
gi|126702928|gb|EBA02031.1| tRNA pseudouridine synthase B [Rhodobacterales bacterium HTCC2150]
Length = 302
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/118 (48%), Positives = 71/118 (60%), Gaps = 1/118 (0%)
Query: 312 VLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIK 371
V+V+KP G TS TV K+R L K GHAGTLDP ATGLL + +G+ATK + +K
Sbjct: 14 VIVDKPAGLTSSTVVNKVRWLFDAAKAGHAGTLDPDATGLLAIALGEATKTIPYITDALK 73
Query: 372 GYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
Y RLG+AT+T D + +I D I A A FRGEI Q+PP FSA+KV
Sbjct: 74 AYEFTIRLGQATNTDDEEGEIIDTSDLRPDTDA-IEAALADFRGEIMQIPPQFSAVKV 130
>gi|453072354|ref|ZP_21975480.1| tRNA pseudouridine synthase B [Rhodococcus qingshengii BKS 20-40]
gi|452757817|gb|EME16218.1| tRNA pseudouridine synthase B [Rhodococcus qingshengii BKS 20-40]
Length = 306
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 72/119 (60%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+K G TS V + R+L+ +KVGHAGTLDPMATG+L++ V +ATKL+
Sbjct: 16 ILIVDKEAGITSHDVVARCRKLLNTRKVGHAGTLDPMATGVLVLGVERATKLLGLLALTT 75
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K YS RLG AT T DA+ V+ + D +I A+ G+I Q+P SAIKV
Sbjct: 76 KAYSATIRLGAATDTDDAEGEVLTSADASQVTDAEIAAIVATLTGDIKQIPASVSAIKV 134
>gi|423558627|ref|ZP_17534929.1| tRNA pseudouridine synthase B [Bacillus cereus MC67]
gi|401191895|gb|EJQ98917.1| tRNA pseudouridine synthase B [Bacillus cereus MC67]
Length = 307
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 76/120 (63%), Gaps = 1/120 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++++ I +++ + A G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVEKQDVNRVITRKEVEEVLAELTGTIEQMPPMFSAVKV 123
>gi|383810700|ref|ZP_09966189.1| tRNA pseudouridine(55) synthase [Prevotella sp. oral taxon 306 str.
F0472]
gi|383356671|gb|EID34166.1| tRNA pseudouridine(55) synthase [Prevotella sp. oral taxon 306 str.
F0472]
Length = 232
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 73/126 (57%), Gaps = 5/126 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK-----KVGHAGTLDPMATGLLIVCVGKATKLV 363
G ++ ++KP G TSF +R L K+GHAGTLDP+ATG+LI+ GK TK +
Sbjct: 6 GVIIPIDKPYGITSFKALAHVRYLCTQANDGKVKIGHAGTLDPLATGVLILATGKMTKQI 65
Query: 364 DRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPM 423
+ Q K Y +LG T ++D + V +R P EHI E I K F G+I Q+PP
Sbjct: 66 ETLQAHTKEYVATLQLGATTPSYDMEHEVNERFPVEHITRELIDKTLPQFVGDIEQIPPT 125
Query: 424 FSAIKV 429
+SA+KV
Sbjct: 126 YSAVKV 131
>gi|188588310|ref|YP_001920621.1| tRNA pseudouridine synthase B [Clostridium botulinum E3 str. Alaska
E43]
gi|188498591|gb|ACD51727.1| tRNA pseudouridine synthase B [Clostridium botulinum E3 str. Alaska
E43]
Length = 291
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 76/125 (60%), Gaps = 3/125 (2%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V K KG +SF V K++ K KKVGH GTLDP A G+L VC+GKATK++D K Y
Sbjct: 7 VFKNKGMSSFDVVRKIKFTAKEKKVGHTGTLDPEAEGVLPVCLGKATKIIDYIMNSRKVY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK---VR 430
LG+ T+T+D + V++ HIK+ D+++ SF G QVPPM+ A+K VR
Sbjct: 67 KVKLLLGKNTTTYDLEGEVVKERDASHIKENDVKETILSFVGGYDQVPPMYCALKQNGVR 126
Query: 431 VFHFS 435
++ +
Sbjct: 127 LYQLA 131
>gi|163941547|ref|YP_001646431.1| tRNA pseudouridine synthase B [Bacillus weihenstephanensis KBAB4]
gi|229134617|ref|ZP_04263427.1| tRNA pseudouridine synthase B [Bacillus cereus BDRD-ST196]
gi|423452889|ref|ZP_17429742.1| tRNA pseudouridine synthase B [Bacillus cereus BAG5X1-1]
gi|423470024|ref|ZP_17446768.1| tRNA pseudouridine synthase B [Bacillus cereus BAG6O-2]
gi|423518500|ref|ZP_17494981.1| tRNA pseudouridine synthase B [Bacillus cereus HuA2-4]
gi|423612027|ref|ZP_17587888.1| tRNA pseudouridine synthase B [Bacillus cereus VD107]
gi|423669384|ref|ZP_17644413.1| tRNA pseudouridine synthase B [Bacillus cereus VDM034]
gi|423674437|ref|ZP_17649376.1| tRNA pseudouridine synthase B [Bacillus cereus VDM062]
gi|163863744|gb|ABY44803.1| tRNA pseudouridine synthase B [Bacillus weihenstephanensis KBAB4]
gi|228648878|gb|EEL04903.1| tRNA pseudouridine synthase B [Bacillus cereus BDRD-ST196]
gi|401139448|gb|EJQ47010.1| tRNA pseudouridine synthase B [Bacillus cereus BAG5X1-1]
gi|401160708|gb|EJQ68083.1| tRNA pseudouridine synthase B [Bacillus cereus HuA2-4]
gi|401247034|gb|EJR53378.1| tRNA pseudouridine synthase B [Bacillus cereus VD107]
gi|401298511|gb|EJS04111.1| tRNA pseudouridine synthase B [Bacillus cereus VDM034]
gi|401309988|gb|EJS15321.1| tRNA pseudouridine synthase B [Bacillus cereus VDM062]
gi|402437276|gb|EJV69300.1| tRNA pseudouridine synthase B [Bacillus cereus BAG6O-2]
Length = 307
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 76/120 (63%), Gaps = 1/120 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++++ I +++ + A G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVEKQDVNRVITRKEVEEVLAELTGTIEQMPPMFSAVKV 123
>gi|375091592|ref|ZP_09737881.1| tRNA pseudouridine synthase B [Helcococcus kunzii ATCC 51366]
gi|374563114|gb|EHR34436.1| tRNA pseudouridine synthase B [Helcococcus kunzii ATCC 51366]
Length = 297
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 73/119 (61%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++VNK + TS V LRR + +K++GH GTLDPMATG+L +C+G +T++
Sbjct: 5 ILVVNKSESLTSHDVVSILRRKLNIKRIGHTGTLDPMATGVLPICIGNSTRISSYIMEQG 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y + G +T+T+D+ V+ + ++ I A ASF+GEI Q PP +SAIKV
Sbjct: 65 KSYIAELKFGTSTTTYDSTGDVVDKSDNTLFSEKQINDALASFKGEIEQYPPKYSAIKV 123
>gi|111023610|ref|YP_706582.1| tRNA pseudouridine synthase B [Rhodococcus jostii RHA1]
gi|123339645|sp|Q0S212.1|TRUB_RHOSR RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|110823140|gb|ABG98424.1| pseudouridylate synthase [Rhodococcus jostii RHA1]
Length = 305
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 74/119 (62%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+K G TS V + R+L+ +KVGHAGTLDPMATG+L++ V +ATKL+
Sbjct: 16 LLIVDKDAGVTSHDVVARCRKLLGTRKVGHAGTLDPMATGVLVLGVERATKLLGFLALTT 75
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ RLG+AT+T DA+ V+ + DE+I + G+I Q+P SAIKV
Sbjct: 76 KAYTATIRLGQATTTDDAEGEVVASADASGVTDEEIAAQVHTLTGDIQQIPSSVSAIKV 134
>gi|423511844|ref|ZP_17488375.1| tRNA pseudouridine synthase B [Bacillus cereus HuA2-1]
gi|402450105|gb|EJV81939.1| tRNA pseudouridine synthase B [Bacillus cereus HuA2-1]
Length = 307
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 76/120 (63%), Gaps = 1/120 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++++ I +++ + A G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVEKQGVNRVITRKEVEEVLAELTGTIEQMPPMFSAVKV 123
>gi|359772930|ref|ZP_09276343.1| tRNA pseudouridine synthase B [Gordonia effusa NBRC 100432]
gi|359309920|dbj|GAB19121.1| tRNA pseudouridine synthase B [Gordonia effusa NBRC 100432]
Length = 307
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 70/119 (58%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V K R+ ++VGHAGTLDPMATG+L+V + +ATKL+
Sbjct: 13 LVVVDKPAGMTSHDVVAKCRKGFNTRRVGHAGTLDPMATGVLVVGIERATKLLGLLSLTT 72
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y RLG+AT + DA+ V+ + D +I A G+I QVP SAIKV
Sbjct: 73 KSYEATIRLGQATDSDDAEGAVVSTADASELTDGEIASGVAELTGDIMQVPAKVSAIKV 131
>gi|229490936|ref|ZP_04384771.1| tRNA pseudouridine synthase B [Rhodococcus erythropolis SK121]
gi|229322326|gb|EEN88112.1| tRNA pseudouridine synthase B [Rhodococcus erythropolis SK121]
Length = 306
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 72/119 (60%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+K G TS V + R+L+ +KVGHAGTLDPMATG+L++ V +ATKL+
Sbjct: 16 ILIVDKEAGITSHDVVARCRKLLNTRKVGHAGTLDPMATGVLVLGVERATKLLGLLALTT 75
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K YS RLG AT T DA+ V+ + D +I A+ G+I Q+P SAIKV
Sbjct: 76 KAYSATIRLGAATDTDDAEGEVLTSADASQVTDAEIAAIVATLTGDIKQIPASVSAIKV 134
>gi|25028428|ref|NP_738482.1| tRNA pseudouridine synthase B [Corynebacterium efficiens YS-314]
gi|23493713|dbj|BAC18682.1| putative tRNA pseudouridine synthase B [Corynebacterium efficiens
YS-314]
Length = 327
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 68/119 (57%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V KLRR +KVGHAGTLDPMATG+L+V + + T+ +
Sbjct: 40 LVVVDKPAGMTSHDVVSKLRRAFSTRKVGHAGTLDPMATGVLVVGIERGTRFLAHLVATT 99
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y RLG +T+T D + V+ + DE I A S GEI Q P SAIK+
Sbjct: 100 KAYDATIRLGASTTTDDREGDVVFSADASTLDDEQITTAVTSLTGEIMQKPASVSAIKI 158
>gi|398782102|ref|ZP_10545933.1| tRNA pseudouridine synthase B [Streptomyces auratus AGR0001]
gi|396996997|gb|EJJ07975.1| tRNA pseudouridine synthase B [Streptomyces auratus AGR0001]
Length = 326
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 72/119 (60%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G+TS V K+R + + ++VGHAGTLDPMATG+L++ + +ATKL+
Sbjct: 28 LVIVDKPAGFTSHDVVAKMRGMARTRRVGHAGTLDPMATGVLVLGIERATKLLGHLALTE 87
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G RLG+ T T DA+ + + + EDI A G I QVP SAIK+
Sbjct: 88 KEYVGTIRLGQTTITDDAEGEITASKAAHGLAREDIDAGIARLSGAIMQVPSKVSAIKI 146
>gi|387818637|ref|YP_005678984.1| tRNA pseudouridine synthase B [Clostridium botulinum H04402 065]
gi|322806681|emb|CBZ04250.1| tRNA pseudouridine synthase B [Clostridium botulinum H04402 065]
Length = 289
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/116 (44%), Positives = 75/116 (64%), Gaps = 1/116 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V KPKG TSF V +R++ K+KKVGH GTLDP+A+G+L VC+GKATK+VD K Y
Sbjct: 7 VLKPKGITSFDVVRDIRKIAKIKKVGHTGTLDPLASGVLPVCIGKATKIVDYIMEGTKTY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
+LG T T+D + V++ + + E + + + G+I QVPPM+SA+K+
Sbjct: 67 RVEMKLGTTTDTYDREGTVLEEKEIDLTPIE-VEEIIKKYIGDIDQVPPMYSALKI 121
>gi|304387300|ref|ZP_07369493.1| tRNA pseudouridine synthase B [Neisseria meningitidis ATCC 13091]
gi|304338683|gb|EFM04800.1| tRNA pseudouridine synthase B [Neisseria meningitidis ATCC 13091]
Length = 314
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 72/118 (61%), Gaps = 1/118 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP+G +S T K RRL + +K GH G LDP+ATGLL VC G+ATK
Sbjct: 21 VLLLDKPEGLSSNTALQKARRLFRAEKAGHTGVLDPLATGLLPVCFGEATKFAQYLLDAD 80
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y+ +LGEA+ST DA+ +I + I + + A + G I QVPPMFSA+K
Sbjct: 81 KAYTATLKLGEASSTGDAEGEIIAAARAD-ISLAEFQTACQALTGNIRQVPPMFSALK 137
>gi|423522360|ref|ZP_17498833.1| tRNA pseudouridine synthase B [Bacillus cereus HuA4-10]
gi|401175054|gb|EJQ82257.1| tRNA pseudouridine synthase B [Bacillus cereus HuA4-10]
Length = 307
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 76/120 (63%), Gaps = 1/120 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++++ I +++ + A G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVEKQDVNRVITRKEVEEVLAELTGTIEQMPPMFSAVKV 123
>gi|317503919|ref|ZP_07961927.1| tRNA pseudouridine synthase B [Prevotella salivae DSM 15606]
gi|315664945|gb|EFV04604.1| tRNA pseudouridine synthase B [Prevotella salivae DSM 15606]
Length = 226
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/126 (40%), Positives = 75/126 (59%), Gaps = 5/126 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK-----KVGHAGTLDPMATGLLIVCVGKATKLV 363
G + ++KP +SF +R ++ K+GHAGTLDP+ATG+LI+C GKATK +
Sbjct: 6 GEIFAIDKPYRISSFGALAHVRYVLSRTLGYKVKIGHAGTLDPLATGVLILCTGKATKRI 65
Query: 364 DRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPM 423
+ +QG K Y+ +LG T+++D + V P EHI E I F G+I Q+PP
Sbjct: 66 EEFQGQTKEYTATLQLGATTASYDMEHEVNALFPTEHITRELINDTLPQFIGDIEQIPPT 125
Query: 424 FSAIKV 429
+SA+KV
Sbjct: 126 YSAVKV 131
>gi|170687863|ref|ZP_02879077.1| tRNA pseudouridine synthase B [Bacillus anthracis str. A0465]
gi|254683483|ref|ZP_05147343.1| tRNA pseudouridine synthase B [Bacillus anthracis str. CNEVA-9066]
gi|170668179|gb|EDT18928.1| tRNA pseudouridine synthase B [Bacillus anthracis str. A0465]
Length = 307
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 78/120 (65%), Gaps = 1/120 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGVTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + + I +++ +A A+ G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETKYVDRVITRKEVEEALATLTGTIEQMPPMFSAVKV 123
>gi|440778346|ref|ZP_20957110.1| tRNA pseudouridine synthase B [Mycobacterium avium subsp.
paratuberculosis S5]
gi|436721322|gb|ELP45465.1| tRNA pseudouridine synthase B [Mycobacterium avium subsp.
paratuberculosis S5]
Length = 279
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/110 (46%), Positives = 67/110 (60%)
Query: 320 WTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRL 379
TS V G+ RR+ ++VGHAGTLDPMATG+L++ V +ATK++ K YS RL
Sbjct: 1 MTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVLGVERATKILGLLTAAAKSYSATIRL 60
Query: 380 GEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
G+ATST DA+ V + H+ + I A RG+I QVP SAIKV
Sbjct: 61 GQATSTDDAEGDVARSVDARHLTSQAIEAAVGGLRGDIHQVPSTVSAIKV 110
>gi|425735422|ref|ZP_18853736.1| tRNA pseudouridine synthase B [Brevibacterium casei S18]
gi|425479828|gb|EKU47000.1| tRNA pseudouridine synthase B [Brevibacterium casei S18]
Length = 308
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 76/126 (60%), Gaps = 4/126 (3%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P G +V +KP+G +S V ++RR +KVGHAGTLDPMATG+L++ +G+ TKL+
Sbjct: 6 PQGILV-CDKPQGLSSHAVVSRIRRWYGTRKVGHAGTLDPMATGVLVLGLGRGTKLLGHI 64
Query: 367 QGMIKGYSGVFRLGEATSTWDADS-PVIQREP--WEHIKDEDIRKAAASFRGEIWQVPPM 423
G+ K Y+ RLG T T DADS P + +P + D DI + RG I QVP
Sbjct: 65 TGVSKTYAATIRLGAGTPTDDADSEPDVFADPARLAAVTDADIASGVTALRGPIDQVPSA 124
Query: 424 FSAIKV 429
SAIKV
Sbjct: 125 VSAIKV 130
>gi|254672177|emb|CBA05026.1| tRNA pseudouridine 55 synthase [Neisseria meningitidis alpha275]
Length = 316
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 72/118 (61%), Gaps = 1/118 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP+G +S T K RRL + +K GH G LDP+ATGLL VC G+ATK
Sbjct: 23 VLLLDKPEGLSSNTALQKARRLFRAEKAGHTGVLDPLATGLLPVCFGEATKFAQYLLDAD 82
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y+ +LGEA+ST DA+ +I + I + + A + G I QVPPMFSA+K
Sbjct: 83 KAYTATLKLGEASSTGDAEGEIIAAARAD-ISLAEFQTACQALTGNIRQVPPMFSALK 139
>gi|229820973|ref|YP_002882499.1| tRNA pseudouridine synthase B [Beutenbergia cavernae DSM 12333]
gi|229566886|gb|ACQ80737.1| tRNA pseudouridine synthase B [Beutenbergia cavernae DSM 12333]
Length = 307
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/124 (45%), Positives = 74/124 (59%), Gaps = 1/124 (0%)
Query: 306 GPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDR 365
GP G + +V+K WTS V + RRL+ +KVGHAGTLDP ATG+L++ VG+AT+L+
Sbjct: 6 GPDG-LAVVDKQAEWTSHDVVARARRLLGTRKVGHAGTLDPAATGVLLLGVGRATRLLTY 64
Query: 366 YQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFS 425
G K Y RLG++T T DA+ V + IR A+F G+I QVP S
Sbjct: 65 LVGADKTYIATIRLGQSTVTDDAEGEVTSAAGAAEVSGTAIRDGVATFLGDISQVPSAVS 124
Query: 426 AIKV 429
AIKV
Sbjct: 125 AIKV 128
>gi|83589901|ref|YP_429910.1| tRNA pseudouridine synthase B [Moorella thermoacetica ATCC 39073]
gi|91208083|sp|Q2RJM2.1|TRUB_MOOTA RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|83572815|gb|ABC19367.1| tRNA pseudouridine synthase B [Moorella thermoacetica ATCC 39073]
Length = 305
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 70/114 (61%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V KP G TS V LRRL+KVK++GH GTLDP+A G+L V VG AT+L++ QG K Y
Sbjct: 8 VLKPPGLTSHDVVQNLRRLLKVKRIGHGGTLDPLAAGVLPVAVGTATRLLEYLQGGDKAY 67
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAI 427
F LG T T D V+ R+P ++D++ A F G I QVPPM SA+
Sbjct: 68 RAEFILGLKTDTQDLGGRVLARKPCPPFTEKDLQAATRPFTGTIRQVPPMVSAV 121
>gi|251778981|ref|ZP_04821901.1| tRNA pseudouridine synthase B [Clostridium botulinum E1 str. 'BoNT
E Beluga']
gi|243083296|gb|EES49186.1| tRNA pseudouridine synthase B [Clostridium botulinum E1 str. 'BoNT
E Beluga']
Length = 291
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 76/125 (60%), Gaps = 3/125 (2%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V K KG +SF V K++ K KKVGH GTLDP A G+L VC+GKATK++D K Y
Sbjct: 7 VFKNKGMSSFDVVRKIKFTAKEKKVGHTGTLDPEAEGVLPVCLGKATKIIDYIMNSRKVY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK---VR 430
LG+ T+T+D + V++ HIK+ D+++ SF G QVPPM+ A+K VR
Sbjct: 67 KVKLLLGKNTTTYDLEGEVVKERDASHIKENDVKETILSFVGGYDQVPPMYCALKQNGVR 126
Query: 431 VFHFS 435
++ +
Sbjct: 127 LYQLA 131
>gi|261381126|ref|ZP_05985699.1| tRNA pseudouridine synthase B [Neisseria subflava NJ9703]
gi|284795928|gb|EFC51275.1| tRNA pseudouridine synthase B [Neisseria subflava NJ9703]
Length = 304
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 73/122 (59%), Gaps = 1/122 (0%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P ++L++KP+ +S T K RRL + +K GH G LDP+ATGLL VC G+ATK
Sbjct: 9 PVNGVLLLDKPESLSSNTALQKARRLFRAEKAGHTGVLDPLATGLLPVCFGEATKFAQYL 68
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
K Y+ +LGEA+ST DA+ +I + I + + A + G+I QVPPMFSA
Sbjct: 69 IDADKAYTATLKLGEASSTGDAEGEIIATARAD-ISLSEFQTACQALTGDIRQVPPMFSA 127
Query: 427 IK 428
+K
Sbjct: 128 LK 129
>gi|259507486|ref|ZP_05750386.1| tRNA pseudouridine synthase B [Corynebacterium efficiens YS-314]
gi|37088867|sp|Q8FPB3.2|TRUB_COREF RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|259164974|gb|EEW49528.1| tRNA pseudouridine synthase B [Corynebacterium efficiens YS-314]
Length = 297
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 68/119 (57%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V KLRR +KVGHAGTLDPMATG+L+V + + T+ +
Sbjct: 10 LVVVDKPAGMTSHDVVSKLRRAFSTRKVGHAGTLDPMATGVLVVGIERGTRFLAHLVATT 69
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y RLG +T+T D + V+ + DE I A S GEI Q P SAIK+
Sbjct: 70 KAYDATIRLGASTTTDDREGDVVFSADASTLDDEQITTAVTSLTGEIMQKPASVSAIKI 128
>gi|416161271|ref|ZP_11606330.1| tRNA pseudouridine synthase B [Neisseria meningitidis N1568]
gi|421542674|ref|ZP_15988781.1| tRNA pseudouridine synthase B [Neisseria meningitidis NM255]
gi|421544666|ref|ZP_15990742.1| tRNA pseudouridine synthase B [Neisseria meningitidis NM140]
gi|421546781|ref|ZP_15992826.1| tRNA pseudouridine synthase B [Neisseria meningitidis NM183]
gi|421549033|ref|ZP_15995057.1| tRNA pseudouridine synthase B [Neisseria meningitidis NM2781]
gi|421552984|ref|ZP_15998956.1| tRNA pseudouridine synthase B [Neisseria meningitidis NM576]
gi|421559372|ref|ZP_16005246.1| tRNA pseudouridine synthase B [Neisseria meningitidis 92045]
gi|433473767|ref|ZP_20431128.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis 97021]
gi|433482329|ref|ZP_20439588.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis 2006087]
gi|433484312|ref|ZP_20441537.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis 2002038]
gi|433486581|ref|ZP_20443776.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis 97014]
gi|325128436|gb|EGC51317.1| tRNA pseudouridine synthase B [Neisseria meningitidis N1568]
gi|402317504|gb|EJU53042.1| tRNA pseudouridine synthase B [Neisseria meningitidis NM255]
gi|402323026|gb|EJU58476.1| tRNA pseudouridine synthase B [Neisseria meningitidis NM183]
gi|402323857|gb|EJU59299.1| tRNA pseudouridine synthase B [Neisseria meningitidis NM140]
gi|402325712|gb|EJU61121.1| tRNA pseudouridine synthase B [Neisseria meningitidis NM2781]
gi|402330163|gb|EJU65512.1| tRNA pseudouridine synthase B [Neisseria meningitidis NM576]
gi|402335871|gb|EJU71134.1| tRNA pseudouridine synthase B [Neisseria meningitidis 92045]
gi|432210065|gb|ELK66031.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis 97021]
gi|432215579|gb|ELK71466.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis 2006087]
gi|432220410|gb|ELK76231.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis 2002038]
gi|432221866|gb|ELK77670.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis 97014]
Length = 307
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 72/118 (61%), Gaps = 1/118 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP+G +S T K RRL + +K GH G LDP+ATGLL VC G+ATK
Sbjct: 14 VLLLDKPEGLSSNTALQKARRLFRAEKAGHTGVLDPLATGLLPVCFGEATKFAQYLLDAD 73
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y+ +LGEA+ST DA+ +I + I + + A + G I QVPPMFSA+K
Sbjct: 74 KAYTATLKLGEASSTGDAEGEIIAAARAD-ISLAEFQTACQALTGNIRQVPPMFSALK 130
>gi|297562522|ref|YP_003681496.1| tRNA pseudouridine synthase B [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
gi|296846970|gb|ADH68990.1| tRNA pseudouridine synthase B [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
Length = 295
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 71/119 (59%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP WTS V + R L + ++VGHAGTLDPMATG+L++ + K TKL+
Sbjct: 6 VVVVDKPADWTSHDVVARTRGLARTRRVGHAGTLDPMATGVLVLGIEKGTKLLGHLTLTE 65
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y RLG T+T DA+ + R + +E +R A G+I Q+PP SAIKV
Sbjct: 66 KVYEATIRLGLTTNTDDAEGEPLVRADASGVGEEAVRAAVGRLTGQIQQIPPQVSAIKV 124
>gi|76788808|ref|YP_327894.1| tRNA pseudouridine synthase B [Chlamydia trachomatis A/HAR-13]
gi|76167338|gb|AAX50346.1| tRNA pseudouridine synthase B [Chlamydia trachomatis A/HAR-13]
Length = 138
Score = 102 bits (255), Expect = 3e-19, Method: Composition-based stats.
Identities = 56/121 (46%), Positives = 78/121 (64%), Gaps = 2/121 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVG-KATKLVDRYQGM 369
++LV+KP+G TSF++ L RL+ VKK+GHAGTLDP ATG++++ +G K T+L D
Sbjct: 11 VLLVDKPQGRTSFSLIRSLVRLIGVKKIGHAGTLDPFATGVMVMLIGRKFTRLSDIMLFE 70
Query: 370 IKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ V LG T T+D D ++ R DE + + F+GEI QVPPMFSA KV
Sbjct: 71 DKEYAAVAHLGTTTDTYDCDGKIVGRSKKVPTMDE-VLTCTSYFQGEIQQVPPMFSAKKV 129
Query: 430 R 430
+
Sbjct: 130 Q 130
>gi|417544951|ref|ZP_12196037.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii OIFC032]
gi|417872083|ref|ZP_12516994.1| tRNA pseudouridine synthase B [Acinetobacter baumannii ABNIH1]
gi|417882855|ref|ZP_12527130.1| tRNA pseudouridine synthase B [Acinetobacter baumannii ABNIH4]
gi|421668218|ref|ZP_16108258.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii OIFC087]
gi|421669087|ref|ZP_16109115.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii OIFC099]
gi|421685814|ref|ZP_16125580.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii IS-143]
gi|421790999|ref|ZP_16227187.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii Naval-2]
gi|424061949|ref|ZP_17799436.1| tRNA pseudouridine synthase B [Acinetobacter baumannii Ab44444]
gi|445478698|ref|ZP_21454821.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii Naval-78]
gi|342223934|gb|EGT89012.1| tRNA pseudouridine synthase B [Acinetobacter baumannii ABNIH1]
gi|342236926|gb|EGU01424.1| tRNA pseudouridine synthase B [Acinetobacter baumannii ABNIH4]
gi|400382839|gb|EJP41517.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii OIFC032]
gi|404570841|gb|EKA75913.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii IS-143]
gi|404674361|gb|EKB42109.1| tRNA pseudouridine synthase B [Acinetobacter baumannii Ab44444]
gi|410380656|gb|EKP33236.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii OIFC087]
gi|410389214|gb|EKP41629.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii OIFC099]
gi|410403877|gb|EKP55951.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii Naval-2]
gi|444774771|gb|ELW98847.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii Naval-78]
Length = 301
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 70/118 (59%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+ L+NKP G +S K+R L + +K GH G LDP+ATGLL +C+G+ATK
Sbjct: 16 VFLLNKPLGLSSNAALQKVRWLYRAQKAGHTGALDPLATGLLPICLGEATKFSHYLLDST 75
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y RLG+ T+T D + ++Q P + E I + FRG+I QVPPM+SA+K
Sbjct: 76 KRYQTTVRLGQTTTTGDVEGDILQERPIPVLSQELIEQTLEKFRGDIQQVPPMYSALK 133
>gi|423367853|ref|ZP_17345285.1| tRNA pseudouridine synthase B [Bacillus cereus VD142]
gi|401082714|gb|EJP90979.1| tRNA pseudouridine synthase B [Bacillus cereus VD142]
Length = 307
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 76/120 (63%), Gaps = 1/120 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++++ I +++ + A G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVEKQDVNRVITRKEVEEVLAELTGTIEQMPPMFSAVKV 123
>gi|228909634|ref|ZP_04073457.1| tRNA pseudouridine synthase B [Bacillus thuringiensis IBL 200]
gi|228849923|gb|EEM94754.1| tRNA pseudouridine synthase B [Bacillus thuringiensis IBL 200]
Length = 307
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 76/120 (63%), Gaps = 1/120 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKVLREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + + I +++ K A G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETKNVDRAITRKEVEKVLAELTGTIEQMPPMFSAVKV 123
>gi|228986953|ref|ZP_04147079.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228772731|gb|EEM21171.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
Length = 307
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 77/120 (64%), Gaps = 1/120 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + + I +++ + A+ G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETKHVDRVITRKEVEEVLAALTGTIEQMPPMFSAVKV 123
>gi|47569087|ref|ZP_00239776.1| tRNA pseudouridine synthase B [Bacillus cereus G9241]
gi|47554249|gb|EAL12611.1| tRNA pseudouridine synthase B [Bacillus cereus G9241]
Length = 307
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 77/120 (64%), Gaps = 1/120 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + + I +++ + A+ G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETKHVDRVITRKEVEEVLAALTGTIEQMPPMFSAVKV 123
>gi|448747668|ref|ZP_21729324.1| tRNA pseudouridine synthase II, TruB [Halomonas titanicae BH1]
gi|445564780|gb|ELY20896.1| tRNA pseudouridine synthase II, TruB [Halomonas titanicae BH1]
Length = 306
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 73/122 (59%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P ++L++KPKG +S ++RRL + +K GH GTLDPMATGLL +C+G+ATK
Sbjct: 9 PVNGVLLLDKPKGVSSNHALQRVRRLFQAQKAGHTGTLDPMATGLLPICLGEATKFSSHL 68
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
K Y LG T T DA+ +I++ + +D+ FRGEI QVPPM+SA
Sbjct: 69 LEADKVYRTRVELGVITDTGDAEGTIIEQHEVPSLSVDDVEAVLTRFRGEIDQVPPMYSA 128
Query: 427 IK 428
+K
Sbjct: 129 LK 130
>gi|352104779|ref|ZP_08960532.1| tRNA pseudouridine synthase B [Halomonas sp. HAL1]
gi|350598701|gb|EHA14811.1| tRNA pseudouridine synthase B [Halomonas sp. HAL1]
Length = 306
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 74/122 (60%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P ++L++KPKG +S ++RRL + +K GH GTLDPMATGLL +C+G+ATK
Sbjct: 9 PVNGVLLLDKPKGVSSNHALQRVRRLFQAQKAGHTGTLDPMATGLLPICLGEATKFSSHL 68
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
K Y LG T T DA+ V+++ + +D++ FRGEI QVPPM+SA
Sbjct: 69 LEADKVYRTRVELGVITDTGDAEGSVMEQHEVPSLSVDDVKAVLTRFRGEIDQVPPMYSA 128
Query: 427 IK 428
+K
Sbjct: 129 LK 130
>gi|148259458|ref|YP_001233585.1| tRNA pseudouridine synthase B [Acidiphilium cryptum JF-5]
gi|326402684|ref|YP_004282765.1| tRNA pseudouridine synthase B [Acidiphilium multivorum AIU301]
gi|338980929|ref|ZP_08632171.1| TruB [Acidiphilium sp. PM]
gi|146401139|gb|ABQ29666.1| tRNA pseudouridine synthase B [Acidiphilium cryptum JF-5]
gi|325049545|dbj|BAJ79883.1| tRNA pseudouridine synthase B [Acidiphilium multivorum AIU301]
gi|338208103|gb|EGO95993.1| TruB [Acidiphilium sp. PM]
Length = 311
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 72/118 (61%), Gaps = 1/118 (0%)
Query: 312 VLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIK 371
++++KP G TS +++RL++ KVGH GTLDP+ATG+L + +G+ATK+V K
Sbjct: 18 IVLDKPPGITSAHAVARIKRLLQAAKVGHGGTLDPLATGVLPIALGRATKMVPYVMDGTK 77
Query: 372 GYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
Y R GEA T DAD V+ + + DI A +FRG I QVPP FSAIKV
Sbjct: 78 RYRFTLRFGEARDTDDADGAVVMTSDFRP-ETSDIDAALVAFRGTIMQVPPAFSAIKV 134
>gi|323344441|ref|ZP_08084666.1| tRNA pseudouridine synthase B [Prevotella oralis ATCC 33269]
gi|323094568|gb|EFZ37144.1| tRNA pseudouridine synthase B [Prevotella oralis ATCC 33269]
Length = 237
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/127 (40%), Positives = 74/127 (58%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK------KVGHAGTLDPMATGLLIVCVGKATKL 362
G ++ ++KP G TSF +R L+ + KVGHAGTLDP+ATG+LI+C G+ATK
Sbjct: 6 GEIIAIDKPLGITSFGALAHIRYLLTRRMGGTKVKVGHAGTLDPLATGVLILCTGRATKQ 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ Q K Y +LG T+++D + P HI E + KA F G+I QVPP
Sbjct: 66 IESLQAHTKEYVATLQLGATTASYDCEHEENAAFPTAHITREAVLKAIDGFVGDIEQVPP 125
Query: 423 MFSAIKV 429
+SA K+
Sbjct: 126 SYSACKI 132
>gi|54026023|ref|YP_120265.1| tRNA pseudouridine synthase B [Nocardia farcinica IFM 10152]
gi|62901242|sp|Q5YSE0.1|TRUB_NOCFA RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|54017531|dbj|BAD58901.1| putative tRNA pseudouridine synthase [Nocardia farcinica IFM 10152]
Length = 306
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/123 (42%), Positives = 77/123 (62%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P G +++V+K G TS V + R+++ +K+GHAGTLDPMATG+L++ V +ATKL+
Sbjct: 13 PLGGLLVVDKDGGMTSHDVVARCRKILGTRKIGHAGTLDPMATGVLVLGVERATKLLGLL 72
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
K Y+ RLG AT+T DA+ V+ P H+ D ++ A+ G+I QVP SA
Sbjct: 73 TLTTKAYTATIRLGSATTTDDAEGEVLTTVPAGHLGDAEVAAGVAALTGDIQQVPATVSA 132
Query: 427 IKV 429
IK+
Sbjct: 133 IKI 135
>gi|186681659|ref|YP_001864855.1| tRNA pseudouridine synthase B [Nostoc punctiforme PCC 73102]
gi|186464111|gb|ACC79912.1| tRNA pseudouridine synthase B [Nostoc punctiforme PCC 73102]
Length = 294
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 76/116 (65%), Gaps = 1/116 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+NKP WTS ++R+L+++K+VGHAGTLDP ATG+L + +GKAT+L+ +Y K Y
Sbjct: 9 LNKPFDWTSHDCVARVRKLLRLKRVGHAGTLDPAATGVLPIALGKATRLL-QYLPENKAY 67
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
RLG T+T D +I +P + +++ A A F G+I Q+PP++SAI+V
Sbjct: 68 KATIRLGVRTTTDDLQGEIITSQPCTGLSLAEVKTALAQFEGKIEQIPPIYSAIQV 123
>gi|197121576|ref|YP_002133527.1| tRNA pseudouridine synthase B [Anaeromyxobacter sp. K]
gi|196171425|gb|ACG72398.1| tRNA pseudouridine synthase B [Anaeromyxobacter sp. K]
Length = 313
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 70/119 (58%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+KP G TSF V ++RR + + GHAGTLDP ATG+L VCV KL
Sbjct: 5 VLVVDKPAGPTSFEVVRRIRRALGAARAGHAGTLDPAATGVLAVCVEDGVKLQQFLSDGD 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G ATST DAD VI R + ++ +R A A G+I QVPPM+SA++V
Sbjct: 65 KAYDAAVAFGAATSTEDADGEVIARGDASALTEDALRAALAGLTGDIEQVPPMYSAVRV 123
>gi|228960026|ref|ZP_04121690.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|423628903|ref|ZP_17604652.1| tRNA pseudouridine synthase B [Bacillus cereus VD154]
gi|228799542|gb|EEM46495.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|401268448|gb|EJR74496.1| tRNA pseudouridine synthase B [Bacillus cereus VD154]
Length = 307
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 75/120 (62%), Gaps = 1/120 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + I +++ K A G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETKNVNRTITRKEVEKVLAELTGTIEQMPPMFSAVKV 123
>gi|294631737|ref|ZP_06710297.1| LOW QUALITY PROTEIN: tRNA pseudouridine synthase B [Streptomyces
sp. e14]
gi|292835070|gb|EFF93419.1| LOW QUALITY PROTEIN: tRNA pseudouridine synthase B [Streptomyces
sp. e14]
Length = 302
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 72/119 (60%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G+TS V K+R + K ++VGHAGTLDPMATG+L++ V +ATKL+
Sbjct: 11 LVIVDKPSGFTSHDVVAKMRGIAKTRRVGHAGTLDPMATGVLVLGVERATKLLGHLALTE 70
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G RLG+ T T DA+ + + E I A A G+I QVP SAIK+
Sbjct: 71 KEYVGTVRLGQNTLTDDAEGEITSSTDASEVTREAIDTAVAKLTGDIMQVPSKVSAIKI 129
>gi|255310896|ref|ZP_05353466.1| tRNA pseudouridine synthase B [Chlamydia trachomatis 6276]
gi|255317196|ref|ZP_05358442.1| tRNA pseudouridine synthase B [Chlamydia trachomatis 6276s]
gi|440533040|emb|CCP58550.1| tRNA pseudouridine synthase B [Chlamydia trachomatis Ia/SotonIa1]
gi|440533934|emb|CCP59444.1| tRNA pseudouridine synthase B [Chlamydia trachomatis Ia/SotonIa3]
Length = 241
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/121 (46%), Positives = 78/121 (64%), Gaps = 2/121 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVG-KATKLVDRYQGM 369
++LV+KP+G TSF++ L RL+ VKK+GHAGTLDP ATG++++ +G K T+L D
Sbjct: 11 VLLVDKPQGRTSFSLIRSLVRLIGVKKIGHAGTLDPFATGVMVMLIGRKFTRLSDIMLFE 70
Query: 370 IKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ V LG T T+D D ++ R DE + + F+GEI QVPPMFSA KV
Sbjct: 71 DKEYAAVAHLGTTTDTYDCDGKIVGRSKKVPTMDE-VLTCTSYFQGEIRQVPPMFSAKKV 129
Query: 430 R 430
+
Sbjct: 130 Q 130
>gi|257125462|ref|YP_003163576.1| tRNA pseudouridine synthase B [Leptotrichia buccalis C-1013-b]
gi|257049401|gb|ACV38585.1| tRNA pseudouridine synthase B [Leptotrichia buccalis C-1013-b]
Length = 355
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/128 (44%), Positives = 75/128 (58%), Gaps = 5/128 (3%)
Query: 303 TWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKL 362
T DG ++L+NK KG +SF +L+R +K KK GHAGTLDPMA GL++V + ATK
Sbjct: 6 TKDG----IILLNKSKGISSFKAIDELKRKIKAKKAGHAGTLDPMAEGLMVVMINDATKF 61
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWE-HIKDEDIRKAAASFRGEIWQVP 421
K Y LG T T+D++ VI+ E + D I + SF+G I QVP
Sbjct: 62 SGDLMKKDKEYYVEMELGYKTDTYDSEGKVIEEYKSEIELSDSQIIRTIHSFKGRIKQVP 121
Query: 422 PMFSAIKV 429
PM+SAIKV
Sbjct: 122 PMYSAIKV 129
>gi|384175408|ref|YP_005556793.1| tRNA pseudouridine synthase B [Bacillus subtilis subsp. subtilis
str. RO-NN-1]
gi|349594632|gb|AEP90819.1| tRNA pseudouridine synthase B [Bacillus subtilis subsp. subtilis
str. RO-NN-1]
Length = 309
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 75/120 (62%), Gaps = 1/120 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP G TS K+R+L+K KKVGH GTLDP +G+L +CVG+ATK+V+
Sbjct: 5 VLLLHKPVGMTSHDCVMKIRKLLKTKKVGHTGTLDPEVSGVLPICVGRATKIVEYLTEKS 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y LG +T+T D ++ +P H I D+ K S +G+ Q+PPM+SA+KV
Sbjct: 65 KTYDAEITLGFSTTTEDQTGETVEAKPVNHDINKADVEKVLNSLKGKQEQIPPMYSAVKV 124
>gi|320528345|ref|ZP_08029507.1| tRNA pseudouridine synthase B [Solobacterium moorei F0204]
gi|320131259|gb|EFW23827.1| tRNA pseudouridine synthase B [Solobacterium moorei F0204]
Length = 280
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 73/119 (61%), Gaps = 2/119 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L+NKP G TSF K R++ +K+GH GTLDP A+GL+I+ +GK TKL+
Sbjct: 4 VILLNKPAGMTSFDAVAKCRKIFHERKIGHTGTLDPEASGLMIILLGKYTKLLPYCVKNH 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQ-REPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y + GE T T D V+Q + P H +E+I KA S G+I QVPPM+SA+K
Sbjct: 64 KAYQATLKFGEMTDTEDVWGTVVQTKTPTIH-TEEEIAKAVQSLTGDILQVPPMYSALK 121
>gi|422110324|ref|ZP_16380386.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|309378867|emb|CBX22572.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 306
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 72/122 (59%), Gaps = 1/122 (0%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P ++L++KP+G +S T K RRL + +K GH G LDP+ATGLL VC G+ATK
Sbjct: 9 PVNGVLLLDKPEGLSSNTALQKARRLFRAEKAGHTGVLDPLATGLLPVCFGEATKFAQYL 68
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
K Y+ +LGEA+ST DA+ ++ + I + A + G I QVPPMFSA
Sbjct: 69 LDADKAYTATLKLGEASSTGDAEGEIVATARAD-ISLAKFQTACQALTGNIRQVPPMFSA 127
Query: 427 IK 428
+K
Sbjct: 128 LK 129
>gi|262280306|ref|ZP_06058090.1| tRNA pseudouridine 55 synthase [Acinetobacter calcoaceticus
RUH2202]
gi|262258084|gb|EEY76818.1| tRNA pseudouridine 55 synthase [Acinetobacter calcoaceticus
RUH2202]
Length = 301
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 70/118 (59%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+ L+NKP G +S K+R L + +K GH G LDP+ATGLL +C+G+ATK
Sbjct: 16 VFLLNKPLGLSSNAALQKVRWLYRAQKAGHTGALDPLATGLLPICLGEATKFSHYLLDST 75
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y RLG+ T+T D + ++Q P + E I + FRG+I Q+PPM+SA+K
Sbjct: 76 KRYQTTVRLGQTTTTGDVEGEILQERPIPVLNRELIEQTLEKFRGDIQQIPPMYSALK 133
>gi|52141677|ref|YP_085151.1| tRNA pseudouridine synthase B [Bacillus cereus E33L]
gi|62901259|sp|Q636L6.1|TRUB_BACCZ RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|51975146|gb|AAU16696.1| tRNA pseudouridine synthase B (tRNA-pseudouridine synthase I)
[Bacillus cereus E33L]
Length = 307
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 77/120 (64%), Gaps = 1/120 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + + I +++ +A + G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETKHVDRVITRKEVEEALVTLTGTIEQMPPMFSAVKV 123
>gi|384181620|ref|YP_005567382.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar
finitimus YBT-020]
gi|324327704|gb|ADY22964.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 307
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 77/120 (64%), Gaps = 1/120 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + + I +++ + A+ G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETKHVDRVITRKEVEEVLAALTGTIEQMPPMFSAVKV 123
>gi|282858551|ref|ZP_06267722.1| tRNA pseudouridine synthase B [Prevotella bivia JCVIHMP010]
gi|424899429|ref|ZP_18322971.1| tRNA pseudouridine 55 synthase [Prevotella bivia DSM 20514]
gi|282588676|gb|EFB93810.1| tRNA pseudouridine synthase B [Prevotella bivia JCVIHMP010]
gi|388591629|gb|EIM31868.1| tRNA pseudouridine 55 synthase [Prevotella bivia DSM 20514]
Length = 235
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 52/126 (41%), Positives = 73/126 (57%), Gaps = 5/126 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK-----KVGHAGTLDPMATGLLIVCVGKATKLV 363
G ++ ++KP G TSF +R L K+GHAGTLDP+ATG+LI+ GK TKL+
Sbjct: 6 GVIIPIDKPYGITSFKALAHVRYLCTQANGGKVKIGHAGTLDPLATGVLILATGKKTKLI 65
Query: 364 DRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPM 423
+ Q K Y +LG T ++D + + P EHI + I+ +F GEI QVPP
Sbjct: 66 ETLQAHTKEYVATLQLGATTPSYDMEHEENETFPIEHITGDLIKNTLQTFVGEIQQVPPT 125
Query: 424 FSAIKV 429
+SA+KV
Sbjct: 126 YSAVKV 131
>gi|325003063|ref|ZP_08124175.1| tRNA pseudouridine synthase B [Pseudonocardia sp. P1]
Length = 297
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/121 (47%), Positives = 80/121 (66%), Gaps = 4/121 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+K +G TS V GKLRR++ +KVGHAGTLDPMATG+L+V + +ATKL+
Sbjct: 11 LVVVDKDRGPTSHDVVGKLRRIMGTRKVGHAGTLDPMATGVLVVGIERATKLLGHLSLDT 70
Query: 371 KGYSGVFRLGEATSTWDAD-SPVIQREPWEHIKDE-DIRKAAASFRGEIWQVPPMFSAIK 428
K Y+ RLG+AT T DA+ +PV +P + E ++R A A G+I QVP SA+K
Sbjct: 71 KAYTATVRLGQATDTDDAEGTPV--GDPVAVVAGEAEVRAAMAVLTGDIEQVPSAVSAVK 128
Query: 429 V 429
+
Sbjct: 129 I 129
>gi|417564992|ref|ZP_12215866.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii OIFC143]
gi|395556748|gb|EJG22749.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii OIFC143]
Length = 301
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 70/118 (59%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+ L+NKP G +S K+R L + +K GH G LDP+ATGLL +C+G+ATK
Sbjct: 16 VFLLNKPLGLSSNAALQKVRWLYRAQKAGHTGALDPLATGLLPICLGEATKFSHYLLDST 75
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y RLG+ T+T D + ++Q P + E I + FRG+I QVPPM+SA+K
Sbjct: 76 KRYQTTVRLGQTTTTGDVEGDILQERPIPVLSKELIEQTLEKFRGDIQQVPPMYSALK 133
>gi|421624388|ref|ZP_16065261.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii OIFC098]
gi|445489766|ref|ZP_21458774.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii AA-014]
gi|408701956|gb|EKL47378.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii OIFC098]
gi|444766208|gb|ELW90483.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii AA-014]
Length = 301
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 70/118 (59%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+ L+NKP G +S K+R L + +K GH G LDP+ATGLL +C+G+ATK
Sbjct: 16 VFLLNKPLGLSSNAALQKVRWLYRAQKAGHTGALDPLATGLLPICLGEATKFSHYLLDST 75
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y RLG+ T+T D + ++Q P + E I + FRG+I QVPPM+SA+K
Sbjct: 76 KRYQTTVRLGQTTTTGDVEGDILQERPIPVLSKELIEQTLEKFRGDIQQVPPMYSALK 133
>gi|424057834|ref|ZP_17795351.1| tRNA pseudouridine synthase B [Acinetobacter nosocomialis Ab22222]
gi|425742914|ref|ZP_18861010.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii WC-487]
gi|445434962|ref|ZP_21440217.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii OIFC021]
gi|407439864|gb|EKF46385.1| tRNA pseudouridine synthase B [Acinetobacter nosocomialis Ab22222]
gi|425485424|gb|EKU51816.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii WC-487]
gi|444755934|gb|ELW80498.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii OIFC021]
Length = 301
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 70/118 (59%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+ L+NKP G +S K+R L + +K GH G LDP+ATGLL +C+G+ATK
Sbjct: 16 VFLLNKPLGLSSNAALQKVRWLYRAQKAGHTGALDPLATGLLPICLGEATKFSHYLLDST 75
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y RLG+ T+T D + ++Q P + E I + FRG+I QVPPM+SA+K
Sbjct: 76 KRYQTTVRLGQTTTTGDVEGDILQERPIPVLSKELIEQTLEKFRGDIQQVPPMYSALK 133
>gi|387784168|ref|YP_006070251.1| tRNA pseudouridine synthase B [Streptococcus salivarius JIM8777]
gi|338745050|emb|CCB95416.1| tRNA pseudouridine synthase B (tRNA pseudouridine 55 synthase)
(Psi55 synthase) (tRNA-uridine isomerase) (tRNA
pseudouridylate synthase) [Streptococcus salivarius
JIM8777]
Length = 280
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 71/110 (64%)
Query: 320 WTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRL 379
TS KLR++++ KK+GH GTLDP TG+L + VGKAT++++ K Y G +
Sbjct: 1 MTSHDAVFKLRKILQEKKIGHGGTLDPDVTGVLPIAVGKATRVIEYMTEAGKVYEGEITI 60
Query: 380 GEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
G +T+T DA ++Q P + +E + KA ASF GEI Q+PPM+SA+KV
Sbjct: 61 GFSTTTEDAGGEIVQTTPVTELDEETVDKAMASFEGEITQIPPMYSAVKV 110
>gi|417550554|ref|ZP_12201633.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii Naval-18]
gi|400386379|gb|EJP49453.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii Naval-18]
Length = 301
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 70/118 (59%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+ L+NKP G +S K+R L + +K GH G LDP+ATGLL +C+G+ATK
Sbjct: 16 VFLLNKPLGLSSNAALQKVRWLYRAQKAGHTGALDPLATGLLPICLGEATKFSHYLLDST 75
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y RLG+ T+T D + ++Q P + E I + FRG+I QVPPM+SA+K
Sbjct: 76 KRYQTTVRLGQTTTTGDVEGDILQERPIPVLSKELIEQTLEKFRGDIQQVPPMYSALK 133
>gi|229197920|ref|ZP_04324636.1| tRNA pseudouridine synthase B [Bacillus cereus m1293]
gi|423574584|ref|ZP_17550703.1| tRNA pseudouridine synthase B [Bacillus cereus MSX-D12]
gi|423604563|ref|ZP_17580456.1| tRNA pseudouridine synthase B [Bacillus cereus VD102]
gi|228585638|gb|EEK43740.1| tRNA pseudouridine synthase B [Bacillus cereus m1293]
gi|401212109|gb|EJR18855.1| tRNA pseudouridine synthase B [Bacillus cereus MSX-D12]
gi|401245183|gb|EJR51541.1| tRNA pseudouridine synthase B [Bacillus cereus VD102]
Length = 307
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 77/120 (64%), Gaps = 1/120 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + + I +++ + A+ G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETKHVDRVITRKEVEEVLAALTGTIEQMPPMFSAVKV 123
>gi|340398817|ref|YP_004727842.1| tRNA pseudouridine synthase B [Streptococcus salivarius CCHSS3]
gi|338742810|emb|CCB93318.1| tRNA pseudouridine synthase B (tRNA pseudouridine 55 synthase)
(Psi55 synthase) (tRNA-uridine isomerase) (tRNA
pseudouridylate synthase) [Streptococcus salivarius
CCHSS3]
Length = 280
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 71/110 (64%)
Query: 320 WTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRL 379
TS KLR++++ KK+GH GTLDP TG+L + VGKAT++++ K Y G +
Sbjct: 1 MTSHDAVFKLRKILQEKKIGHGGTLDPDVTGVLPIAVGKATRVIEYMTEAGKVYEGEITI 60
Query: 380 GEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
G +T+T DA ++Q P + +E + KA ASF GEI Q+PPM+SA+KV
Sbjct: 61 GFSTTTEDASGEIVQTTPVTELDEEAVDKAMASFEGEITQIPPMYSAVKV 110
>gi|260556951|ref|ZP_05829168.1| tRNA pseudouridine synthase B [Acinetobacter baumannii ATCC 19606 =
CIP 70.34]
gi|260409557|gb|EEX02858.1| tRNA pseudouridine synthase B [Acinetobacter baumannii ATCC 19606 =
CIP 70.34]
gi|452949447|gb|EME54915.1| tRNA pseudouridine synthase B [Acinetobacter baumannii MSP4-16]
Length = 301
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 70/118 (59%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+ L+NKP G +S K+R L + +K GH G LDP+ATGLL +C+G+ATK
Sbjct: 16 VFLLNKPLGLSSNAALQKVRWLYRAQKAGHTGALDPLATGLLPICLGEATKFSHYLLDST 75
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y RLG+ T+T D + ++Q P + E I + FRG+I QVPPM+SA+K
Sbjct: 76 KRYQTTVRLGQTTTTGDVEGDILQERPIPVLSKELIEQTLEKFRGDIQQVPPMYSALK 133
>gi|229047496|ref|ZP_04193086.1| tRNA pseudouridine synthase B [Bacillus cereus AH676]
gi|229111281|ref|ZP_04240834.1| tRNA pseudouridine synthase B [Bacillus cereus Rock1-15]
gi|229129086|ref|ZP_04258059.1| tRNA pseudouridine synthase B [Bacillus cereus BDRD-Cer4]
gi|229146381|ref|ZP_04274752.1| tRNA pseudouridine synthase B [Bacillus cereus BDRD-ST24]
gi|296504305|ref|YP_003666005.1| tRNA pseudouridine synthase B [Bacillus thuringiensis BMB171]
gi|423585781|ref|ZP_17561868.1| tRNA pseudouridine synthase B [Bacillus cereus VD045]
gi|423641109|ref|ZP_17616727.1| tRNA pseudouridine synthase B [Bacillus cereus VD166]
gi|423649673|ref|ZP_17625243.1| tRNA pseudouridine synthase B [Bacillus cereus VD169]
gi|37088205|sp|Q812X9.2|TRUB_BACCR RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|228637014|gb|EEK93473.1| tRNA pseudouridine synthase B [Bacillus cereus BDRD-ST24]
gi|228654323|gb|EEL10188.1| tRNA pseudouridine synthase B [Bacillus cereus BDRD-Cer4]
gi|228672057|gb|EEL27348.1| tRNA pseudouridine synthase B [Bacillus cereus Rock1-15]
gi|228723743|gb|EEL75098.1| tRNA pseudouridine synthase B [Bacillus cereus AH676]
gi|296325357|gb|ADH08285.1| tRNA pseudouridine synthase B [Bacillus thuringiensis BMB171]
gi|401233127|gb|EJR39623.1| tRNA pseudouridine synthase B [Bacillus cereus VD045]
gi|401280170|gb|EJR86092.1| tRNA pseudouridine synthase B [Bacillus cereus VD166]
gi|401282953|gb|EJR88850.1| tRNA pseudouridine synthase B [Bacillus cereus VD169]
Length = 307
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 75/120 (62%), Gaps = 1/120 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + + I ++ K A G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETKNVDRTITRMEVEKVLAELTGTIEQMPPMFSAVKV 123
>gi|42782898|ref|NP_980145.1| tRNA pseudouridine synthase B [Bacillus cereus ATCC 10987]
gi|54036501|sp|Q732R2.1|TRUB_BACC1 RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|42738825|gb|AAS42753.1| tRNA pseudouridine synthase B [Bacillus cereus ATCC 10987]
Length = 307
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 77/120 (64%), Gaps = 1/120 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCIFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + + I +++ + A+ G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETKHVDRVITRKEVEEVLAALTGTIEQMPPMFSAVKV 123
>gi|322372971|ref|ZP_08047507.1| tRNA pseudouridine synthase B [Streptococcus sp. C150]
gi|419706855|ref|ZP_14234363.1| tRNA pseudouridine synthase B [Streptococcus salivarius PS4]
gi|321278013|gb|EFX55082.1| tRNA pseudouridine synthase B [Streptococcus sp. C150]
gi|383283424|gb|EIC81380.1| tRNA pseudouridine synthase B [Streptococcus salivarius PS4]
Length = 293
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 74/119 (62%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR+++ KK+GH GTLDP TG+L + VGKAT++++
Sbjct: 5 IINLKKEAGMTSHDAVFKLRKILHEKKIGHGGTLDPDVTGVLPIAVGKATRVIEYMTEAG 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G +G +T+T DA V+Q P + +E + KA +SF G+I Q PPM+SA+KV
Sbjct: 65 KVYEGEITIGFSTTTEDASGDVVQTTPLTELDEESVDKAMSSFEGQITQTPPMYSAVKV 123
>gi|429743815|ref|ZP_19277351.1| tRNA pseudouridine synthase B [Neisseria sp. oral taxon 020 str.
F0370]
gi|429164496|gb|EKY06627.1| tRNA pseudouridine synthase B [Neisseria sp. oral taxon 020 str.
F0370]
Length = 305
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 72/122 (59%), Gaps = 1/122 (0%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P ++L++KP G +S T K RRL + +K GH G LDP+ATGLL VC G+A K
Sbjct: 9 PVNGVLLLDKPAGLSSNTALQKARRLYRAEKAGHTGVLDPLATGLLPVCFGEAAKFAQYL 68
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
K Y+ +LG+A+ST DA+ ++ I + + A A+ G+I QVPPMFSA
Sbjct: 69 LDADKAYTATLKLGQASSTGDAEGEIVA-TGRPDISQAEFQTACAALTGDIRQVPPMFSA 127
Query: 427 IK 428
+K
Sbjct: 128 LK 129
>gi|423395891|ref|ZP_17373092.1| tRNA pseudouridine synthase B [Bacillus cereus BAG2X1-1]
gi|423406767|ref|ZP_17383916.1| tRNA pseudouridine synthase B [Bacillus cereus BAG2X1-3]
gi|401653633|gb|EJS71177.1| tRNA pseudouridine synthase B [Bacillus cereus BAG2X1-1]
gi|401660057|gb|EJS77540.1| tRNA pseudouridine synthase B [Bacillus cereus BAG2X1-3]
Length = 307
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 76/120 (63%), Gaps = 1/120 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + + I +++ A A G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETKNVDRVITRKEVEGALAELTGTIEQMPPMFSAVKV 123
>gi|169794517|ref|YP_001712310.1| tRNA pseudouridine synthase B [Acinetobacter baumannii AYE]
gi|213158911|ref|YP_002320909.1| tRNA pseudouridine synthase B [Acinetobacter baumannii AB0057]
gi|215482105|ref|YP_002324287.1| tRNA pseudouridine synthase B [Acinetobacter baumannii AB307-0294]
gi|301344862|ref|ZP_07225603.1| tRNA pseudouridine synthase B [Acinetobacter baumannii AB056]
gi|301511141|ref|ZP_07236378.1| tRNA pseudouridine synthase B [Acinetobacter baumannii AB058]
gi|301596528|ref|ZP_07241536.1| tRNA pseudouridine synthase B [Acinetobacter baumannii AB059]
gi|332851319|ref|ZP_08433371.1| tRNA pseudouridine synthase B [Acinetobacter baumannii 6013150]
gi|332868730|ref|ZP_08438353.1| tRNA pseudouridine synthase B [Acinetobacter baumannii 6013113]
gi|417572690|ref|ZP_12223544.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii Canada
BC-5]
gi|421620899|ref|ZP_16061827.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii OIFC074]
gi|421642018|ref|ZP_16082549.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii IS-235]
gi|421647930|ref|ZP_16088341.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii IS-251]
gi|421659794|ref|ZP_16100010.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii Naval-83]
gi|421673858|ref|ZP_16113795.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii OIFC065]
gi|421690335|ref|ZP_16130006.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii IS-116]
gi|421698252|ref|ZP_16137794.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii IS-58]
gi|421796443|ref|ZP_16232506.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii Naval-21]
gi|421800240|ref|ZP_16236219.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii Canada
BC1]
gi|421807222|ref|ZP_16243083.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii OIFC035]
gi|424058478|ref|ZP_17795975.1| tRNA pseudouridine synthase B [Acinetobacter baumannii Ab33333]
gi|425748376|ref|ZP_18866363.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii WC-348]
gi|445410704|ref|ZP_21433020.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii Naval-57]
gi|445460884|ref|ZP_21448483.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii OIFC047]
gi|169147444|emb|CAM85305.1| tRNA pseudouridine 55 synthase [Acinetobacter baumannii AYE]
gi|193078536|gb|ABO13555.2| tRNA pseudouridine 55 synthase [Acinetobacter baumannii ATCC 17978]
gi|213058071|gb|ACJ42973.1| tRNA pseudouridine synthase B [Acinetobacter baumannii AB0057]
gi|213987576|gb|ACJ57875.1| tRNA pseudouridine synthase B [Acinetobacter baumannii AB307-0294]
gi|332730035|gb|EGJ61363.1| tRNA pseudouridine synthase B [Acinetobacter baumannii 6013150]
gi|332733159|gb|EGJ64356.1| tRNA pseudouridine synthase B [Acinetobacter baumannii 6013113]
gi|400208258|gb|EJO39228.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii Canada
BC-5]
gi|404564607|gb|EKA69786.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii IS-116]
gi|404572552|gb|EKA77594.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii IS-58]
gi|404665720|gb|EKB33682.1| tRNA pseudouridine synthase B [Acinetobacter baumannii Ab33333]
gi|408514770|gb|EKK16376.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii IS-235]
gi|408516124|gb|EKK17703.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii IS-251]
gi|408699759|gb|EKL45234.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii OIFC074]
gi|408707127|gb|EKL52421.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii Naval-83]
gi|410386076|gb|EKP38560.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii OIFC065]
gi|410399097|gb|EKP51295.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii Naval-21]
gi|410408448|gb|EKP60416.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii Canada
BC1]
gi|410416864|gb|EKP68635.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii OIFC035]
gi|425491257|gb|EKU57542.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii WC-348]
gi|444772348|gb|ELW96466.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii OIFC047]
gi|444779877|gb|ELX03850.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii Naval-57]
Length = 301
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 70/118 (59%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+ L+NKP G +S K+R L + +K GH G LDP+ATGLL +C+G+ATK
Sbjct: 16 VFLLNKPLGLSSNAALQKVRWLYRAQKAGHTGALDPLATGLLPICLGEATKFSHYLLDST 75
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y RLG+ T+T D + ++Q P + E I + FRG+I QVPPM+SA+K
Sbjct: 76 KRYQTTVRLGQTTTTGDVEGDILQERPIPVLSKELIEQTLEKFRGDIQQVPPMYSALK 133
>gi|126740774|ref|ZP_01756459.1| tRNA pseudouridine synthase B [Roseobacter sp. SK209-2-6]
gi|126718070|gb|EBA14787.1| tRNA pseudouridine synthase B [Roseobacter sp. SK209-2-6]
Length = 305
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/118 (49%), Positives = 76/118 (64%), Gaps = 1/118 (0%)
Query: 312 VLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIK 371
++V+KP G TS V K+R ++ KK GHAGTLDP ATG+L V +G+ATK V +K
Sbjct: 14 LVVDKPAGLTSTAVVNKVRWALEAKKAGHAGTLDPEATGVLAVALGEATKTVPYITDALK 73
Query: 372 GYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
Y+ RLG+AT+T DA+ VI E DE I++A F GEI QVPP FSA+K+
Sbjct: 74 AYTFTVRLGQATNTDDAEGEVIA-ESDARPTDEQIKEALLPFLGEIQQVPPKFSAVKI 130
>gi|396583561|ref|ZP_10484090.1| tRNA pseudouridine(55) synthase [Actinomyces sp. ICM47]
gi|395548942|gb|EJG16109.1| tRNA pseudouridine(55) synthase [Actinomyces sp. ICM47]
Length = 343
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 73/125 (58%)
Query: 305 DGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVD 364
D P +++++KP G TS V ++RRL +KVGH GTLDPMATG+L++ VGKATKL+
Sbjct: 6 DNPRPGLLVIDKPAGITSHDVVARVRRLGHTRKVGHGGTLDPMATGVLVIGVGKATKLLT 65
Query: 365 RYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMF 424
G K Y R G T+T DA+ + + D+ A A RG+I QVP
Sbjct: 66 WVSGHSKEYLATIRFGIGTNTDDAEGLPTSAVGCTSLSESDLEAALAPLRGDIMQVPTTV 125
Query: 425 SAIKV 429
SAIKV
Sbjct: 126 SAIKV 130
>gi|377559158|ref|ZP_09788718.1| tRNA pseudouridine synthase B [Gordonia otitidis NBRC 100426]
gi|377523616|dbj|GAB33883.1| tRNA pseudouridine synthase B [Gordonia otitidis NBRC 100426]
Length = 299
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 71/119 (59%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+K +G TS V + R+L ++VGHAGTLDPMATG+L+V V +ATKL+
Sbjct: 11 LVIVDKNEGITSHDVVSRCRKLFDTRRVGHAGTLDPMATGVLVVGVERATKLLGLLSLNT 70
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ RLG AT T D VI + I DE I A+ G+I QVP SAIKV
Sbjct: 71 KSYTATIRLGAATDTDDRMGEVISQSDASSITDEQIADTIATLTGDIEQVPAKVSAIKV 129
>gi|334116528|ref|ZP_08490620.1| tRNA pseudouridine synthase B [Microcoleus vaginatus FGP-2]
gi|333461348|gb|EGK89953.1| tRNA pseudouridine synthase B [Microcoleus vaginatus FGP-2]
Length = 313
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 51/116 (43%), Positives = 72/116 (62%), Gaps = 1/116 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+NKP G TS G++RRL+K+K+VGH GTLDP TG+L + +GKAT+L+ +Y K Y
Sbjct: 9 LNKPAGMTSHDCVGRVRRLLKLKRVGHGGTLDPAVTGVLPIALGKATRLL-QYLQHNKAY 67
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
G R G T+T D + +I P + E ++ A F G+I Q PP FSA++V
Sbjct: 68 RGTIRFGLTTATDDLEGEIIHSRPVPELSLEKVQAALPKFLGKIEQFPPSFSAVQV 123
>gi|402556069|ref|YP_006597340.1| tRNA pseudouridine synthase B [Bacillus cereus FRI-35]
gi|401797279|gb|AFQ11138.1| tRNA pseudouridine synthase B [Bacillus cereus FRI-35]
Length = 307
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 77/120 (64%), Gaps = 1/120 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + + I +++ + A+ G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETKHVDRVITRKEVEEVLAALTGTIEQMPPMFSAVKV 123
>gi|260549918|ref|ZP_05824134.1| tRNA pseudouridine synthase B [Acinetobacter sp. RUH2624]
gi|260407168|gb|EEX00645.1| tRNA pseudouridine synthase B [Acinetobacter sp. RUH2624]
Length = 301
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 70/118 (59%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+ L+NKP G +S K+R L + +K GH G LDP+ATGLL +C+G+ATK
Sbjct: 16 VFLLNKPLGLSSNAALQKVRWLYRAQKAGHTGALDPLATGLLPICLGEATKFSHYLLDST 75
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y RLG+ T+T D + ++Q P + E I + FRG+I QVPPM+SA+K
Sbjct: 76 KRYQTTVRLGQTTTTGDVEGDILQERPIPVLSKELIEQTLEKFRGDIQQVPPMYSALK 133
>gi|239501930|ref|ZP_04661240.1| tRNA pseudouridine synthase B [Acinetobacter baumannii AB900]
gi|421680372|ref|ZP_16120227.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii OIFC111]
gi|410389741|gb|EKP42152.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii OIFC111]
Length = 301
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 70/118 (59%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+ L+NKP G +S K+R L + +K GH G LDP+ATGLL +C+G+ATK
Sbjct: 16 VFLLNKPLGLSSNAALQKVRWLYRAQKAGHTGALDPLATGLLPICLGEATKFSHYLLDST 75
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y RLG+ T+T D + ++Q P + E I + FRG+I QVPPM+SA+K
Sbjct: 76 KRYQTTVRLGQTTTTGDVEGDILQERPIPVLSKELIEQTLEKFRGDIQQVPPMYSALK 133
>gi|163848561|ref|YP_001636605.1| tRNA pseudouridine synthase B [Chloroflexus aurantiacus J-10-fl]
gi|222526496|ref|YP_002570967.1| tRNA pseudouridine synthase B [Chloroflexus sp. Y-400-fl]
gi|163669850|gb|ABY36216.1| tRNA pseudouridine synthase B [Chloroflexus aurantiacus J-10-fl]
gi|222450375|gb|ACM54641.1| tRNA pseudouridine synthase B [Chloroflexus sp. Y-400-fl]
Length = 290
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 73/119 (61%), Gaps = 1/119 (0%)
Query: 312 VLVNKPKGWTSFTVCGKLRRLV-KVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++V+KP G TS V ++RRL + KVGHAGTLDP ATG+L V +G AT+L+D+
Sbjct: 8 LVVDKPAGLTSHDVVARVRRLAGRAVKVGHAGTLDPAATGVLPVALGSATRLIDQLVDAR 67
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
KGY GV RLG T+T DA+ + P +I A FRG+I Q PP FSA+ V
Sbjct: 68 KGYRGVVRLGVQTTTDDAEGEPVATLPVPVFTITEIAAVLAQFRGDILQQPPAFSALHV 126
>gi|229157386|ref|ZP_04285464.1| tRNA pseudouridine synthase B [Bacillus cereus ATCC 4342]
gi|228626113|gb|EEK82862.1| tRNA pseudouridine synthase B [Bacillus cereus ATCC 4342]
Length = 307
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 77/120 (64%), Gaps = 1/120 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VILLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + + I +++ + A+ G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETKHVDRVITRKEVEEVLAALTGTIEQMPPMFSAVKV 123
>gi|451945660|ref|YP_007466255.1| tRNA pseudouridine synthase B [Desulfocapsa sulfexigens DSM 10523]
gi|451905008|gb|AGF76602.1| tRNA pseudouridine synthase B [Desulfocapsa sulfexigens DSM 10523]
Length = 246
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 53/117 (45%), Positives = 73/117 (62%), Gaps = 1/117 (0%)
Query: 313 LVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGK-ATKLVDRYQGMIK 371
LV+KP+G +SF + K+R+ + +KKVGHAGTLDP ATGLL+VC G+ ATK++ + K
Sbjct: 11 LVDKPQGASSFYIVRKVRKALGMKKVGHAGTLDPFATGLLVVCAGRSATKMIGQIMEGDK 70
Query: 372 GYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
Y RLG TST D + V + + I K FRGE Q+PP++SA+K
Sbjct: 71 EYITTLRLGVETSTLDPEGEVTATHSVGSLSENVIEKCLEQFRGEQLQIPPIYSALK 127
>gi|357392202|ref|YP_004907043.1| putative tRNA pseudouridine synthase B [Kitasatospora setae
KM-6054]
gi|311898679|dbj|BAJ31087.1| putative tRNA pseudouridine synthase B [Kitasatospora setae
KM-6054]
Length = 301
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/124 (45%), Positives = 73/124 (58%), Gaps = 1/124 (0%)
Query: 306 GPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDR 365
GP G +V+V+KP+G TS V KLR L +KVGHAGTLDPMATG+L++ V +AT+L+
Sbjct: 7 GPDG-LVIVDKPEGITSHGVVAKLRWLAGTRKVGHAGTLDPMATGVLVIGVERATRLLGH 65
Query: 366 YQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFS 425
K Y RLG+ T T D + V P + + E + A GEI QVP S
Sbjct: 66 LMLTAKTYEATIRLGQTTVTDDREGEVTASVPADGVTPEAVDAQVAELTGEIMQVPSKVS 125
Query: 426 AIKV 429
AIK+
Sbjct: 126 AIKI 129
>gi|169632277|ref|YP_001706013.1| tRNA pseudouridine synthase B [Acinetobacter baumannii SDF]
gi|169151069|emb|CAO99727.1| tRNA pseudouridine 55 synthase [Acinetobacter baumannii]
Length = 301
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 70/118 (59%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+ L+NKP G +S K+R L + +K GH G LDP+ATGLL +C+G+ATK
Sbjct: 16 VFLLNKPLGLSSNAALQKVRWLYRAQKAGHTGALDPLATGLLPICLGEATKFSHYLLDST 75
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y RLG+ T+T D + ++Q P + E I + FRG+I QVPPM+SA+K
Sbjct: 76 KRYQTTVRLGQTTTTGDVEGDILQERPIPVLSKELIEQTLEKFRGDIQQVPPMYSALK 133
>gi|408829994|ref|ZP_11214884.1| tRNA pseudouridine synthase B [Streptomyces somaliensis DSM 40738]
Length = 308
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 72/119 (60%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G+TS V K+R + + ++VGHAGTLDPMATG+L++ V KATKL+
Sbjct: 20 LVIVDKPSGFTSHDVVAKMRGIARTRRVGHAGTLDPMATGVLVLGVEKATKLLGHLALTE 79
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G RLG+ T T DA+ V + E + A A G+I QVP SAIK+
Sbjct: 80 KEYLGTVRLGQNTVTDDAEGEVTSSSDASRVTREAVDAAVAELTGDIMQVPSKVSAIKI 138
>gi|421654561|ref|ZP_16094888.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii Naval-72]
gi|408510332|gb|EKK11994.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii Naval-72]
Length = 301
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 70/118 (59%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+ L+NKP G +S K+R L + +K GH G LDP+ATGLL +C+G+ATK
Sbjct: 16 VFLLNKPLGLSSNAALQKVRWLYRAQKAGHTGALDPLATGLLPICLGEATKFSHYLLDST 75
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y RLG+ T+T D + ++Q P + E I + FRG+I QVPPM+SA+K
Sbjct: 76 KRYQTTVRLGQTTTTGDVEGDILQERPIPVLSKELIEQTLEKFRGDIQQVPPMYSALK 133
>gi|253580817|ref|ZP_04858080.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251847887|gb|EES75854.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 295
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 74/119 (62%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++++ K KG+TS V KLR ++ +KK+GH GTLDP A G+L V +GKAT+LVD
Sbjct: 5 VIVIRKEKGFTSHDVVAKLRGILHMKKIGHTGTLDPDAEGVLPVALGKATRLVDMITDKE 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y V RLG T T D V+ + + +E++ +SF G+ QVPPM+SA+KV
Sbjct: 65 KTYEAVMRLGVVTDTQDMSGTVLSQTTELSVTEEELCTVVSSFVGDYMQVPPMYSALKV 123
>gi|416146976|ref|ZP_11601523.1| pseudouridine synthase [Acinetobacter baumannii AB210]
gi|333365932|gb|EGK47946.1| pseudouridine synthase [Acinetobacter baumannii AB210]
Length = 301
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 69/116 (59%)
Query: 313 LVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKG 372
L+NKP G +S K+R L + +K GH G LDP+ATGLL +C+G+ATK K
Sbjct: 18 LLNKPLGLSSNAALQKVRWLYRAQKAGHTGALDPLATGLLPICLGEATKFSHYLLDSTKR 77
Query: 373 YSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
Y RLG+ T+T D + ++Q P + E I + FRG+I QVPPM+SA+K
Sbjct: 78 YQTTVRLGQTTTTGDVEGDILQERPIPVLSKELIEQTLEKFRGDIQQVPPMYSALK 133
>gi|184159675|ref|YP_001848014.1| tRNA pseudouridine synthase B [Acinetobacter baumannii ACICU]
gi|332873810|ref|ZP_08441752.1| tRNA pseudouridine synthase B [Acinetobacter baumannii 6014059]
gi|384133366|ref|YP_005515978.1| tRNA pseudouridine 55 synthase [Acinetobacter baumannii 1656-2]
gi|384144788|ref|YP_005527498.1| pseudouridine synthase [Acinetobacter baumannii MDR-ZJ06]
gi|385239105|ref|YP_005800444.1| tRNA pseudouridine synthase B [Acinetobacter baumannii TCDC-AB0715]
gi|387122408|ref|YP_006288290.1| tRNA pseudouridine 55 synthase [Acinetobacter baumannii MDR-TJ]
gi|407934259|ref|YP_006849902.1| tRNA pseudouridine 55 synthase [Acinetobacter baumannii TYTH-1]
gi|417570473|ref|ZP_12221330.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii OIFC189]
gi|417576951|ref|ZP_12227796.1| tRNA pseudouridine synthase B [Acinetobacter baumannii Naval-17]
gi|417875190|ref|ZP_12520011.1| tRNA pseudouridine synthase B [Acinetobacter baumannii ABNIH2]
gi|417880185|ref|ZP_12524721.1| tRNA pseudouridine synthase B [Acinetobacter baumannii ABNIH3]
gi|421628682|ref|ZP_16069448.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii OIFC180]
gi|421704937|ref|ZP_16144378.1| tRNA pseudouridine synthase B [Acinetobacter baumannii ZWS1122]
gi|421708716|ref|ZP_16148089.1| tRNA pseudouridine synthase B [Acinetobacter baumannii ZWS1219]
gi|424050783|ref|ZP_17788319.1| tRNA pseudouridine synthase B [Acinetobacter baumannii Ab11111]
gi|425753866|ref|ZP_18871733.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii Naval-113]
gi|445470597|ref|ZP_21451529.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii OIFC338]
gi|183211269|gb|ACC58667.1| Pseudouridine synthase [Acinetobacter baumannii ACICU]
gi|322509586|gb|ADX05040.1| tRNA pseudouridine 55 synthase [Acinetobacter baumannii 1656-2]
gi|323519606|gb|ADX93987.1| tRNA pseudouridine synthase B [Acinetobacter baumannii TCDC-AB0715]
gi|332738033|gb|EGJ68918.1| tRNA pseudouridine synthase B [Acinetobacter baumannii 6014059]
gi|342225820|gb|EGT90800.1| tRNA pseudouridine synthase B [Acinetobacter baumannii ABNIH3]
gi|342226719|gb|EGT91681.1| tRNA pseudouridine synthase B [Acinetobacter baumannii ABNIH2]
gi|347595281|gb|AEP08002.1| pseudouridine synthase [Acinetobacter baumannii MDR-ZJ06]
gi|385876900|gb|AFI93995.1| tRNA pseudouridine 55 synthase [Acinetobacter baumannii MDR-TJ]
gi|395550921|gb|EJG16930.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii OIFC189]
gi|395570172|gb|EJG30834.1| tRNA pseudouridine synthase B [Acinetobacter baumannii Naval-17]
gi|404669536|gb|EKB37429.1| tRNA pseudouridine synthase B [Acinetobacter baumannii Ab11111]
gi|407189030|gb|EKE60258.1| tRNA pseudouridine synthase B [Acinetobacter baumannii ZWS1122]
gi|407189444|gb|EKE60670.1| tRNA pseudouridine synthase B [Acinetobacter baumannii ZWS1219]
gi|407902840|gb|AFU39671.1| tRNA pseudouridine 55 synthase [Acinetobacter baumannii TYTH-1]
gi|408705673|gb|EKL51007.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii OIFC180]
gi|425497259|gb|EKU63365.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii Naval-113]
gi|444772551|gb|ELW96666.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii OIFC338]
Length = 301
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 69/116 (59%)
Query: 313 LVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKG 372
L+NKP G +S K+R L + +K GH G LDP+ATGLL +C+G+ATK K
Sbjct: 18 LLNKPLGLSSNAALQKVRWLYRAQKAGHTGALDPLATGLLPICLGEATKFSHYLLDSTKR 77
Query: 373 YSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
Y RLG+ T+T D + ++Q P + E I + FRG+I QVPPM+SA+K
Sbjct: 78 YQTTVRLGQTTTTGDVEGDILQERPIPVLSKELIEQTLEKFRGDIQQVPPMYSALK 133
>gi|445442397|ref|ZP_21442344.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii WC-A-92]
gi|444763917|gb|ELW88251.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii WC-A-92]
Length = 301
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 70/118 (59%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+ L+NKP G +S K+R L + +K GH G LDP+ATGLL +C+G+ATK
Sbjct: 16 VFLLNKPLGLSSNAALQKVRWLYRAQKAGHTGALDPLATGLLPICLGEATKFSHYLLDST 75
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y RLG+ T+T D + ++Q P + E I + FRG+I QVPPM+SA+K
Sbjct: 76 KRYQTTVRLGQTTTTGDVEGDILQERPIPVLSKELIEQTLEKFRGDIQQVPPMYSALK 133
>gi|400536900|ref|ZP_10800434.1| tRNA pseudouridine synthase B [Mycobacterium colombiense CECT 3035]
gi|400329913|gb|EJO87412.1| tRNA pseudouridine synthase B [Mycobacterium colombiense CECT 3035]
Length = 279
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/110 (43%), Positives = 68/110 (61%)
Query: 320 WTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRL 379
TS V G+ RR+ ++VGHAGTLDPMATG+L++ V +ATK++ K Y+ RL
Sbjct: 1 MTSHDVVGRCRRIFSTRRVGHAGTLDPMATGVLVIGVERATKILGLLTATAKSYTATIRL 60
Query: 380 GEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
G++TST DA+ +++ H+ E + A RG+I QVP SAIKV
Sbjct: 61 GQSTSTDDAEGELVRSVSARHLTGEAVESAMGGLRGDIEQVPSTVSAIKV 110
>gi|346306477|ref|ZP_08848633.1| hypothetical protein HMPREF9457_00342 [Dorea formicigenerans
4_6_53AFAA]
gi|345897851|gb|EGX67748.1| hypothetical protein HMPREF9457_00342 [Dorea formicigenerans
4_6_53AFAA]
Length = 304
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 52/116 (44%), Positives = 69/116 (59%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V K +G+TS V KLR +V KK+GH GTLDP A G+L VC+G+ATKL D K Y
Sbjct: 8 VYKEQGFTSHDVVAKLRGIVGQKKIGHTGTLDPDAVGVLPVCLGRATKLCDMLTDKDKVY 67
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
V LG T T D +++ + I +E +R A F G+ QVPPM+SA+K+
Sbjct: 68 EAVMLLGVETDTQDTTGQILKSSETDEITEEQVRAAVLDFVGDYDQVPPMYSALKI 123
>gi|389605495|emb|CCA44412.1| tRNA pseudouridine synthase B [Neisseria meningitidis alpha522]
Length = 316
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 71/118 (60%), Gaps = 1/118 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP+G +S T K RRL +K GH G LDP+ATGLL VC G+ATK
Sbjct: 23 VLLLDKPEGLSSNTALQKARRLFHAEKAGHTGVLDPLATGLLPVCFGEATKFAQYLLDAD 82
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y+ +LGEA+ST DA+ +I + I + + A + G I QVPPMFSA+K
Sbjct: 83 KAYTATLKLGEASSTGDAEGEIIATARAD-ISLAEFQTACQALTGNIRQVPPMFSALK 139
>gi|418288560|ref|ZP_12901035.1| tRNA pseudouridine synthase B [Neisseria meningitidis NM233]
gi|418290797|ref|ZP_12902910.1| tRNA pseudouridine synthase B [Neisseria meningitidis NM220]
gi|372201006|gb|EHP14989.1| tRNA pseudouridine synthase B [Neisseria meningitidis NM220]
gi|372201692|gb|EHP15585.1| tRNA pseudouridine synthase B [Neisseria meningitidis NM233]
Length = 307
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 73/118 (61%), Gaps = 1/118 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP+G +S T K RRL + +K GH G LDP+ATGLL VC G+ATK
Sbjct: 14 VLLLDKPEGLSSNTALQKARRLFRAEKAGHTGVLDPLATGLLPVCFGEATKFAQYLLDAD 73
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y+ +LGEA+ST DA+ ++ + I + + A + G+I QVPPMFSA+K
Sbjct: 74 KAYTATLKLGEASSTGDAEGEIVATARAD-ISLAEFQTACKALTGDIRQVPPMFSALK 130
>gi|339635064|ref|YP_004726705.1| tRNA pseudouridine synthase B [Weissella koreensis KACC 15510]
gi|420161059|ref|ZP_14667830.1| pseudouridylate synthase [Weissella koreensis KCTC 3621]
gi|338854860|gb|AEJ24026.1| tRNA pseudouridine synthase B [Weissella koreensis KACC 15510]
gi|394745809|gb|EJF34627.1| pseudouridylate synthase [Weissella koreensis KCTC 3621]
Length = 301
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 81/129 (62%), Gaps = 4/129 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ VNKP G TS V +LR+++++KK+GHAGTLDP G+L V +G+ATK ++ Q
Sbjct: 4 IIAVNKPSGMTSHDVVFRLRKILQMKKIGHAGTLDPSVDGVLPVALGRATKTIEFLQNSG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKD-EDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+G G +T T D D V++++P + D I A GEI Q+PPM+SA+KV
Sbjct: 64 KVYTGEIIFGFSTETEDLDGEVVEKKPLSNPFDTATITTAMEQMTGEITQIPPMYSAVKV 123
Query: 430 ---RVFHFS 435
R++ ++
Sbjct: 124 NGRRLYQYA 132
>gi|427828063|ref|ZP_18995082.1| tRNA pseudouridine synthase B [Neisseria meningitidis H44/76]
gi|316984189|gb|EFV63167.1| tRNA pseudouridine synthase B [Neisseria meningitidis H44/76]
Length = 314
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 71/118 (60%), Gaps = 1/118 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP+G +S T K RRL +K GH G LDP+ATGLL VC G+ATK
Sbjct: 21 VLLLDKPEGLSSNTALQKARRLFHAEKAGHTGVLDPLATGLLPVCFGEATKFAQYLLDAD 80
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y+ +LGEA+ST DA+ +I + I + + A + G I QVPPMFSA+K
Sbjct: 81 KAYTATLKLGEASSTGDAEGEIIATARAD-ISLAEFQTACQALTGNIRQVPPMFSALK 137
>gi|229162746|ref|ZP_04290703.1| tRNA pseudouridine synthase B [Bacillus cereus R309803]
gi|228620628|gb|EEK77497.1| tRNA pseudouridine synthase B [Bacillus cereus R309803]
Length = 307
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 77/120 (64%), Gaps = 1/120 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + + I +++ + A+ G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETKNVDRVITRKEVEEVLAALTGTIEQMPPMFSAVKV 123
>gi|113953640|ref|YP_731431.1| tRNA pseudouridine synthase B [Synechococcus sp. CC9311]
gi|122945568|sp|Q0I7Z1.1|TRUB_SYNS3 RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|113880991|gb|ABI45949.1| tRNA pseudouridine synthase B [Synechococcus sp. CC9311]
Length = 297
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 76/125 (60%), Gaps = 2/125 (1%)
Query: 305 DGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVD 364
D P G V+++KP G TS ++RR+++ K+VGH GTLDP TG+L + VG+AT+L+
Sbjct: 2 DAPLG-FVVIDKPSGLTSHACVSRMRRVLQTKRVGHGGTLDPAVTGVLPIAVGQATRLLP 60
Query: 365 RYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMF 424
G K Y GV +LG +TST D ++ + W + E++ +A FRG I Q PP
Sbjct: 61 YLPGE-KTYRGVIQLGTSTSTDDLQGEIVAVQNWPDLSVEEMDQALNPFRGTIEQCPPQV 119
Query: 425 SAIKV 429
SA+ V
Sbjct: 120 SAVHV 124
>gi|434404631|ref|YP_007147516.1| tRNA pseudouridine synthase B [Cylindrospermum stagnale PCC 7417]
gi|428258886|gb|AFZ24836.1| tRNA pseudouridine synthase B [Cylindrospermum stagnale PCC 7417]
Length = 292
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 52/116 (44%), Positives = 73/116 (62%), Gaps = 1/116 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+NKP WTS ++R+L+++K+VGHAGTLDP ATG+L + +GKAT+L+ G K Y
Sbjct: 7 LNKPFDWTSHDCVARVRKLLRLKRVGHAGTLDPKATGVLPIALGKATRLLQYLPGE-KAY 65
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
RLG T+T D + VI P + DI A F+G+I Q+PP +SAI+V
Sbjct: 66 KATIRLGVRTTTDDLEGEVITSVPCSGLNLADINTALGQFQGKIAQIPPSYSAIQV 121
>gi|403674471|ref|ZP_10936726.1| tRNA pseudouridine synthase B [Acinetobacter sp. NCTC 10304]
gi|421649859|ref|ZP_16090241.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii OIFC0162]
gi|408512258|gb|EKK13903.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii OIFC0162]
Length = 301
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 69/116 (59%)
Query: 313 LVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKG 372
L+NKP G +S K+R L + +K GH G LDP+ATGLL +C+G+ATK K
Sbjct: 18 LLNKPLGLSSNAALQKVRWLYRAQKAGHTGALDPLATGLLPICLGEATKFSHYLLDSTKR 77
Query: 373 YSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
Y RLG+ T+T D + ++Q P + E I + FRG+I QVPPM+SA+K
Sbjct: 78 YQTTVRLGQTTTTGDVEGDILQERPIPVLSKELIEQTLEKFRGDIQQVPPMYSALK 133
>gi|423656669|ref|ZP_17631968.1| tRNA pseudouridine synthase B [Bacillus cereus VD200]
gi|401290410|gb|EJR96104.1| tRNA pseudouridine synthase B [Bacillus cereus VD200]
Length = 307
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 75/120 (62%), Gaps = 1/120 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + + I ++ K A G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETKNVDRTITRMEVEKVLAELTGTIEQMPPMFSAVKV 123
>gi|329936651|ref|ZP_08286358.1| tRNA pseudouridine synthase [Streptomyces griseoaurantiacus M045]
gi|329303881|gb|EGG47764.1| tRNA pseudouridine synthase [Streptomyces griseoaurantiacus M045]
Length = 301
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 73/119 (61%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G+TS V K+R + + ++VGHAGTLDPMATG+L++ V +ATKL+
Sbjct: 11 LVIVDKPSGFTSHDVVAKMRGIARTRRVGHAGTLDPMATGVLVLGVERATKLLGHLALTE 70
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G RLG++T T DA+ + I E + A+ G+I QVP SAIK+
Sbjct: 71 KEYLGTVRLGQSTLTDDAEGEITASADASAITREAVEAGVAALTGDIMQVPSKVSAIKI 129
>gi|416215263|ref|ZP_11623298.1| tRNA pseudouridine synthase B [Neisseria meningitidis M01-240013]
gi|325143449|gb|EGC65775.1| tRNA pseudouridine synthase B [Neisseria meningitidis M01-240013]
Length = 314
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 71/118 (60%), Gaps = 1/118 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP+G +S T K RRL +K GH G LDP+ATGLL VC G+ATK
Sbjct: 21 VLLLDKPEGLSSNTALQKARRLFHAEKAGHTGVLDPLATGLLPVCFGEATKFAQYLLDAD 80
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y+ +LGEA+ST DA+ +I + I + + A + G I QVPPMFSA+K
Sbjct: 81 KAYTATLKLGEASSTGDAEGEIIATARAD-ISLAEFQTACQALTGNIRQVPPMFSALK 137
>gi|296451310|ref|ZP_06893050.1| tRNA pseudouridine synthase B [Clostridium difficile NAP08]
gi|296880338|ref|ZP_06904301.1| tRNA pseudouridine synthase B [Clostridium difficile NAP07]
gi|296259916|gb|EFH06771.1| tRNA pseudouridine synthase B [Clostridium difficile NAP08]
gi|296428579|gb|EFH14463.1| tRNA pseudouridine synthase B [Clostridium difficile NAP07]
Length = 301
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 78/119 (65%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + KP G TS V ++R+++ +KKVGH GTLDP A+G+L +C+GKATK+ +
Sbjct: 4 IISILKPTGMTSHDVVSRVRKILNIKKVGHTGTLDPDASGVLPICIGKATKVCEVILNKD 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y LG +T T+DA ++++ +E+I++A + RGEI Q+PP++SA+KV
Sbjct: 64 KSYICELTLGISTDTYDASGEILKKVDDFKFSNEEIKRAFDTQRGEINQLPPIYSALKV 122
>gi|451944448|ref|YP_007465084.1| tRNA pseudouridine synthase B [Corynebacterium halotolerans YIM
70093 = DSM 44683]
gi|451903835|gb|AGF72722.1| tRNA pseudouridine synthase B [Corynebacterium halotolerans YIM
70093 = DSM 44683]
Length = 297
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 69/119 (57%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V +LRR + K+VGHAGTLDPMATG+L+V + + T+ +
Sbjct: 10 LVVVDKPAGMTSHDVVSRLRRFFRTKRVGHAGTLDPMATGVLVVGIERGTRFLAHLVATT 69
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y RLG AT+T DA+ E + +E +R A GEI Q P SAIK+
Sbjct: 70 KAYDATIRLGAATTTDDAEGDHTWGESAAALDEEAVRAAVGKLTGEIMQRPASVSAIKI 128
>gi|374296758|ref|YP_005046949.1| tRNA pseudouridine synthase B [Clostridium clariflavum DSM 19732]
gi|359826252|gb|AEV69025.1| tRNA pseudouridine synthase B [Clostridium clariflavum DSM 19732]
Length = 295
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 56/116 (48%), Positives = 74/116 (63%), Gaps = 1/116 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+ KP G TSF V LRRL+K KK+GH GTLDP A G+L VC+GKATK ++ K Y
Sbjct: 7 ILKPPGMTSFDVVAYLRRLLKEKKIGHTGTLDPGAVGVLPVCIGKATKTIEYLTDKDKEY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
LG +T T D+ V+++ +I+ E+I KA SF GE Q+PPM+SA+KV
Sbjct: 67 RAELTLGISTDTQDSYGNVLKKCDV-NIEKEEIYKAIMSFVGEYNQIPPMYSAVKV 121
>gi|433515871|ref|ZP_20472639.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis 2004090]
gi|433528442|ref|ZP_20485051.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis NM3652]
gi|433530643|ref|ZP_20487232.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis NM3642]
gi|433532912|ref|ZP_20489475.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis 2007056]
gi|433534718|ref|ZP_20491258.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis 2001212]
gi|432252797|gb|ELL08147.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis 2004090]
gi|432265243|gb|ELL20439.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis NM3652]
gi|432266735|gb|ELL21917.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis 2007056]
gi|432267150|gb|ELL22331.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis NM3642]
gi|432271460|gb|ELL26585.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis 2001212]
Length = 306
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 73/122 (59%), Gaps = 1/122 (0%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P ++L++KP+G +S T K R L + +K GH G LDP+ATGLL VC G+ATK
Sbjct: 9 PVNGVLLLDKPEGLSSNTALQKTRHLFRAEKAGHTGVLDPLATGLLPVCFGEATKFAQYL 68
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
K Y+ +LGEA+ST DA+ ++ + I + + A + G+I QVPPMFSA
Sbjct: 69 INADKAYTATLKLGEASSTGDAEGEIVATARAD-ISLAEFQTACKALTGDIRQVPPMFSA 127
Query: 427 IK 428
+K
Sbjct: 128 LK 129
>gi|340363139|ref|ZP_08685488.1| tRNA pseudouridine synthase B [Neisseria macacae ATCC 33926]
gi|339886590|gb|EGQ76234.1| tRNA pseudouridine synthase B [Neisseria macacae ATCC 33926]
Length = 353
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 72/122 (59%), Gaps = 1/122 (0%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P ++L++KP+G +S T K RRL +K GH G LDP+ATGLL VC G+ATK
Sbjct: 58 PVNGVLLLDKPEGLSSNTALQKARRLYNAEKAGHTGVLDPLATGLLPVCFGEATKFAQYL 117
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
K Y+ +LGEA+ST DA+ +I + I + + A + G I QVPPMFSA
Sbjct: 118 LDADKAYTATLKLGEASSTGDAEGEIIATARAD-ISLAEFQTACQALTGNIRQVPPMFSA 176
Query: 427 IK 428
+K
Sbjct: 177 LK 178
>gi|325269368|ref|ZP_08135985.1| tRNA pseudouridine synthase B [Prevotella multiformis DSM 16608]
gi|324988289|gb|EGC20255.1| tRNA pseudouridine synthase B [Prevotella multiformis DSM 16608]
Length = 233
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 52/126 (41%), Positives = 73/126 (57%), Gaps = 5/126 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK-----KVGHAGTLDPMATGLLIVCVGKATKLV 363
G ++ ++KP G TSF +R L K+GHAGTLDP+ATG+LI+ G+ TK +
Sbjct: 6 GVIIPIDKPYGITSFKALAHIRYLCTQANDGKVKIGHAGTLDPLATGVLILATGRMTKQI 65
Query: 364 DRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPM 423
+ Q K Y+ F+LG T ++D + V P EHI E I A F G+I Q+PP
Sbjct: 66 ETLQAHTKEYTATFQLGATTPSYDMEHEVNGTFPTEHITRELIDATLARFVGDIEQIPPT 125
Query: 424 FSAIKV 429
+SA+KV
Sbjct: 126 YSAVKV 131
>gi|448821513|ref|YP_007414675.1| tRNA pseudouridine synthase B [Lactobacillus plantarum ZJ316]
gi|448275010|gb|AGE39529.1| tRNA pseudouridine synthase B [Lactobacillus plantarum ZJ316]
Length = 307
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 53/115 (46%), Positives = 68/115 (59%), Gaps = 1/115 (0%)
Query: 316 KPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSG 375
KP+G TSF K+RRL + +KVGH+GTLDP G+L +C+G ATK+V K Y G
Sbjct: 10 KPRGMTSFDCVAKIRRLYQTRKVGHSGTLDPNVDGVLPICIGNATKVVQFLVASGKEYQG 69
Query: 376 VFRLGEATSTWDADSPVIQREP-WEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
LG AT+T D D I R+ E + + A A G I Q+PPMFSA+KV
Sbjct: 70 SITLGFATTTEDLDGEEIARQAVTEPFTSDQVDAALAQMTGAITQIPPMFSAVKV 124
>gi|430758910|ref|YP_007209631.1| tRNA pseudouridine synthase B [Bacillus subtilis subsp. subtilis
str. BSP1]
gi|449094357|ref|YP_007426848.1| tRNA pseudouridine 55 synthase [Bacillus subtilis XF-1]
gi|430023430|gb|AGA24036.1| tRNA pseudouridine synthase B [Bacillus subtilis subsp. subtilis
str. BSP1]
gi|449028272|gb|AGE63511.1| tRNA pseudouridine 55 synthase [Bacillus subtilis XF-1]
Length = 309
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 75/120 (62%), Gaps = 1/120 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP G TS K+R+L+K KKVGH GTLDP +G+L +CVG+ATK+V+
Sbjct: 5 VLLLHKPVGMTSHDCVMKIRKLLKTKKVGHTGTLDPEVSGVLPICVGRATKIVEYLTEKS 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y LG +T+T D ++ +P H I D+ K S +G+ Q+PPM+SA+KV
Sbjct: 65 KTYDAEITLGFSTTTEDQTGETVETKPVNHDIDKADVEKVLNSLKGKQEQIPPMYSAVKV 124
>gi|421663067|ref|ZP_16103221.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii OIFC110]
gi|421697184|ref|ZP_16136754.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii WC-692]
gi|404559171|gb|EKA64437.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii WC-692]
gi|408714095|gb|EKL59250.1| tRNA pseudouridine(55) synthase [Acinetobacter baumannii OIFC110]
Length = 301
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 70/118 (59%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+ L+NKP G +S K+R L + +K GH G LDP+ATGLL +C+G+ATK
Sbjct: 16 VFLLNKPLGLSSNAALQKVRWLYRAQKAGHTGALDPLATGLLPICLGEATKFSHYLLDST 75
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y RLG+ T+T D + ++Q P + E I + FRG+I QVPPM+SA+K
Sbjct: 76 KRYQTTVRLGQTTTTGDVEGDILQERPIPVLSKELIEQTLEKFRGDIQQVPPMYSALK 133
>gi|385341711|ref|YP_005895582.1| tRNA pseudouridine synthase B [Neisseria meningitidis M01-240149]
gi|385857443|ref|YP_005903955.1| tRNA pseudouridine synthase B [Neisseria meningitidis NZ-05/33]
gi|416187455|ref|ZP_11614216.1| tRNA pseudouridine synthase B [Neisseria meningitidis M0579]
gi|325136468|gb|EGC59074.1| tRNA pseudouridine synthase B [Neisseria meningitidis M0579]
gi|325201917|gb|ADY97371.1| tRNA pseudouridine synthase B [Neisseria meningitidis M01-240149]
gi|325208332|gb|ADZ03784.1| tRNA pseudouridine synthase B [Neisseria meningitidis NZ-05/33]
Length = 307
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 71/118 (60%), Gaps = 1/118 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP+G +S T K RRL +K GH G LDP+ATGLL VC G+ATK
Sbjct: 14 VLLLDKPEGLSSNTALQKARRLFHAEKAGHTGVLDPLATGLLPVCFGEATKFAQYLLDAD 73
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y+ +LGEA+ST DA+ +I + I + + A + G I QVPPMFSA+K
Sbjct: 74 KAYTATLKLGEASSTGDAEGEIIATARAD-ISLAEFQTACQALTGNIRQVPPMFSALK 130
>gi|254477782|ref|ZP_05091168.1| tRNA pseudouridine synthase B [Ruegeria sp. R11]
gi|214032025|gb|EEB72860.1| tRNA pseudouridine synthase B [Ruegeria sp. R11]
Length = 301
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 59/118 (50%), Positives = 74/118 (62%), Gaps = 1/118 (0%)
Query: 312 VLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIK 371
++V+KP G TS V K+R KK GHAGTLDP ATG+L V +G+ATK V +K
Sbjct: 14 LVVDKPAGLTSTAVVNKVRWAFDAKKAGHAGTLDPEATGVLAVALGEATKTVPYITDALK 73
Query: 372 GYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
Y+ RLG+AT+T DA+ VI E + DE I+ A F GEI QVPP FSA+KV
Sbjct: 74 AYTFTVRLGQATNTDDAEGEVIA-ESSDRPSDEAIKDALLPFLGEIQQVPPKFSAVKV 130
>gi|152976176|ref|YP_001375693.1| tRNA pseudouridine synthase B [Bacillus cytotoxicus NVH 391-98]
gi|189030158|sp|A7GRE0.1|TRUB_BACCN RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|152024928|gb|ABS22698.1| tRNA pseudouridine synthase B [Bacillus cytotoxicus NVH 391-98]
Length = 307
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 75/120 (62%), Gaps = 1/120 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++++ I ++I A G + QVPPM+SA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVEKQDVNRTITRKEIEAVLAELTGTLEQVPPMYSAVKV 123
>gi|228940898|ref|ZP_04103457.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228973827|ref|ZP_04134403.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228980416|ref|ZP_04140726.1| tRNA pseudouridine synthase B [Bacillus thuringiensis Bt407]
gi|384187867|ref|YP_005573763.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar
chinensis CT-43]
gi|410676183|ref|YP_006928554.1| tRNA pseudouridine synthase B [Bacillus thuringiensis Bt407]
gi|423385313|ref|ZP_17362569.1| tRNA pseudouridine synthase B [Bacillus cereus BAG1X1-2]
gi|423528329|ref|ZP_17504774.1| tRNA pseudouridine synthase B [Bacillus cereus HuB1-1]
gi|452200247|ref|YP_007480328.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
gi|228779236|gb|EEM27493.1| tRNA pseudouridine synthase B [Bacillus thuringiensis Bt407]
gi|228785852|gb|EEM33855.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228818734|gb|EEM64800.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|326941576|gb|AEA17472.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar
chinensis CT-43]
gi|401635369|gb|EJS53124.1| tRNA pseudouridine synthase B [Bacillus cereus BAG1X1-2]
gi|402451992|gb|EJV83811.1| tRNA pseudouridine synthase B [Bacillus cereus HuB1-1]
gi|409175312|gb|AFV19617.1| tRNA pseudouridine synthase B [Bacillus thuringiensis Bt407]
gi|452105640|gb|AGG02580.1| tRNA pseudouridine synthase B [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
Length = 307
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 76/120 (63%), Gaps = 1/120 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPLCVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++++ I +++ + A G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVEKQDVNRVITRKEVEEVLAELTGTIEQMPPMFSAVKV 123
>gi|321315433|ref|YP_004207720.1| tRNA pseudouridine synthase B [Bacillus subtilis BSn5]
gi|320021707|gb|ADV96693.1| tRNA pseudouridine synthase B [Bacillus subtilis BSn5]
Length = 309
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 75/120 (62%), Gaps = 1/120 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP G TS K+R+L+K KKVGH GTLDP +G+L +CVG+ATK+V+
Sbjct: 5 VLLLHKPVGMTSHDCVMKIRKLLKTKKVGHTGTLDPEVSGVLPICVGRATKIVEYLTEKS 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y LG +T+T D ++ +P H I D+ K S +G+ Q+PPM+SA+KV
Sbjct: 65 KTYDAEITLGFSTTTEDQTGETVEAKPVNHDIDKADVEKVLNSLKGKQEQIPPMYSAVKV 124
>gi|28210964|ref|NP_781908.1| tRNA pseudouridine synthase B [Clostridium tetani E88]
gi|37088403|sp|Q895J5.1|TRUB_CLOTE RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|28203403|gb|AAO35845.1| tRNA pseudouridine synthase B [Clostridium tetani E88]
Length = 289
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 52/117 (44%), Positives = 77/117 (65%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V KP+ TSF V ++++ ++KKVGH GTLDPMATG+L +C+G +TK+VD K Y
Sbjct: 7 VYKPQNITSFDVVRIIKKISRIKKVGHTGTLDPMATGVLPICLGGSTKIVDFIMNEHKEY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVR 430
+LG T T+D + V++ E I +E++ SF+GEI Q+PPM+SAIK++
Sbjct: 67 RAKLKLGLITDTYDREGKVLKEEDASKILEEEVVNCINSFKGEIIQIPPMYSAIKIK 123
>gi|282889770|ref|ZP_06298309.1| hypothetical protein pah_c004o143 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|338175949|ref|YP_004652759.1| tRNA pseudouridine synthase B [Parachlamydia acanthamoebae UV-7]
gi|281500344|gb|EFB42624.1| hypothetical protein pah_c004o143 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|336480307|emb|CCB86905.1| tRNA pseudouridine synthase B [Parachlamydia acanthamoebae UV-7]
Length = 238
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 81/122 (66%), Gaps = 8/122 (6%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKA-TKLVDRYQGM 369
++L++KP+G T+F + +LR+++ VKK+GHAGTLDP ATG++++ +G+ T+L D++
Sbjct: 14 VLLLDKPRGCTAFNLVARLRKVLGVKKIGHAGTLDPFATGVMVMLIGRNFTRLSDQFLCQ 73
Query: 370 IKGYSGVFRLGEATSTWDADSPVIQ---REPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
K Y LG AT T+D + ++ R P E+I+ A SF+GEI QVPPMFSA
Sbjct: 74 DKEYEAEAYLGAATDTYDCEGQILSQCGRVPTL----EEIQVALQSFQGEILQVPPMFSA 129
Query: 427 IK 428
K
Sbjct: 130 KK 131
>gi|427728297|ref|YP_007074534.1| tRNA pseudouridine 55 synthase [Nostoc sp. PCC 7524]
gi|427364216|gb|AFY46937.1| tRNA pseudouridine 55 synthase [Nostoc sp. PCC 7524]
Length = 292
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 75/116 (64%), Gaps = 1/116 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+NKP GWTS K+R+L+++K++GHAGTLDP A G+L + VGKAT+L+ G K Y
Sbjct: 7 LNKPFGWTSHDCVAKVRKLLRLKRIGHAGTLDPAAIGVLPIAVGKATRLLQYLPGE-KAY 65
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
+ RLG T+T D +I +P + +++ A + F G+I Q+PP +SAI+V
Sbjct: 66 NATIRLGVRTTTDDLQGEIITSQPSPELDLIEVKTALSQFVGKIEQIPPSYSAIQV 121
>gi|15677239|ref|NP_274392.1| tRNA pseudouridine synthase B [Neisseria meningitidis MC58]
gi|385851036|ref|YP_005897551.1| tRNA pseudouridine synthase B [Neisseria meningitidis M04-240196]
gi|385853001|ref|YP_005899515.1| tRNA pseudouridine synthase B [Neisseria meningitidis H44/76]
gi|416182740|ref|ZP_11612176.1| tRNA pseudouridine synthase B [Neisseria meningitidis M13399]
gi|416196312|ref|ZP_11618082.1| tRNA pseudouridine synthase B [Neisseria meningitidis CU385]
gi|433465316|ref|ZP_20422798.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis NM422]
gi|433488654|ref|ZP_20445816.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis M13255]
gi|433490696|ref|ZP_20447822.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis NM418]
gi|433505187|ref|ZP_20462126.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis 9506]
gi|433507379|ref|ZP_20464287.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis 9757]
gi|433509340|ref|ZP_20466209.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis 12888]
gi|433511585|ref|ZP_20468412.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis 4119]
gi|13959595|sp|Q9JYY1.1|TRUB_NEIMB RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|7226620|gb|AAF41748.1| tRNA pseudouridine synthase B [Neisseria meningitidis MC58]
gi|325134390|gb|EGC57035.1| tRNA pseudouridine synthase B [Neisseria meningitidis M13399]
gi|325140406|gb|EGC62927.1| tRNA pseudouridine synthase B [Neisseria meningitidis CU385]
gi|325200005|gb|ADY95460.1| tRNA pseudouridine synthase B [Neisseria meningitidis H44/76]
gi|325205859|gb|ADZ01312.1| tRNA pseudouridine synthase B [Neisseria meningitidis M04-240196]
gi|432203260|gb|ELK59314.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis NM422]
gi|432223487|gb|ELK79268.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis M13255]
gi|432227687|gb|ELK83396.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis NM418]
gi|432241312|gb|ELK96842.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis 9506]
gi|432241744|gb|ELK97273.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis 9757]
gi|432246728|gb|ELL02174.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis 12888]
gi|432247633|gb|ELL03070.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis 4119]
Length = 307
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 71/118 (60%), Gaps = 1/118 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP+G +S T K RRL +K GH G LDP+ATGLL VC G+ATK
Sbjct: 14 VLLLDKPEGLSSNTALQKARRLFHAEKAGHTGVLDPLATGLLPVCFGEATKFAQYLLDAD 73
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y+ +LGEA+ST DA+ +I + I + + A + G I QVPPMFSA+K
Sbjct: 74 KAYTATLKLGEASSTGDAEGEIIATARAD-ISLAEFQTACQALTGNIRQVPPMFSALK 130
>gi|254556863|ref|YP_003063280.1| tRNA pseudouridine synthase B [Lactobacillus plantarum JDM1]
gi|300768176|ref|ZP_07078081.1| pseudouridylate synthase [Lactobacillus plantarum subsp. plantarum
ATCC 14917]
gi|308180804|ref|YP_003924932.1| pseudouridylate synthase [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|380032801|ref|YP_004889792.1| tRNA pseudouridine synthase B [Lactobacillus plantarum WCFS1]
gi|418275545|ref|ZP_12890868.1| tRNA pseudouridine synthase B [Lactobacillus plantarum subsp.
plantarum NC8]
gi|37088392|sp|Q88VL5.1|TRUB_LACPL RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|254045790|gb|ACT62583.1| pseudouridylate synthase [Lactobacillus plantarum JDM1]
gi|300494240|gb|EFK29403.1| pseudouridylate synthase [Lactobacillus plantarum subsp. plantarum
ATCC 14917]
gi|308046295|gb|ADN98838.1| pseudouridylate synthase [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|342242044|emb|CCC79278.1| tRNA pseudouridine synthase B [Lactobacillus plantarum WCFS1]
gi|376009096|gb|EHS82425.1| tRNA pseudouridine synthase B [Lactobacillus plantarum subsp.
plantarum NC8]
Length = 307
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 53/115 (46%), Positives = 68/115 (59%), Gaps = 1/115 (0%)
Query: 316 KPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSG 375
KP+G TSF K+RRL + +KVGH+GTLDP G+L +C+G ATK+V K Y G
Sbjct: 10 KPRGMTSFDCVAKIRRLYQTRKVGHSGTLDPNVDGVLPICIGNATKVVQFLVASGKEYQG 69
Query: 376 VFRLGEATSTWDADSPVIQREP-WEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
LG AT+T D D I R+ E + + A A G I Q+PPMFSA+KV
Sbjct: 70 SITLGFATTTEDLDGEEIARQAVTEPFTSDQVDAALAQMTGAITQIPPMFSAVKV 124
>gi|194098833|ref|YP_002001896.1| tRNA pseudouridine synthase B [Neisseria gonorrhoeae NCCP11945]
gi|268684490|ref|ZP_06151352.1| tRNA pseudouridine synthase B [Neisseria gonorrhoeae SK-92-679]
gi|226708671|sp|B4RMB1.1|TRUB_NEIG2 RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|193934123|gb|ACF29947.1| putative tRNA pseudouridine synthase B [Neisseria gonorrhoeae
NCCP11945]
gi|268624774|gb|EEZ57174.1| tRNA pseudouridine synthase B [Neisseria gonorrhoeae SK-92-679]
Length = 306
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 71/122 (58%), Gaps = 1/122 (0%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P ++L++KP+G +S T K RRL +K GH G LDP+ATGLL VC G+A K
Sbjct: 9 PVNGVLLLDKPEGLSSNTALQKARRLFHAEKAGHTGVLDPLATGLLPVCFGEAAKFAQYL 68
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
K Y+ +LGEA+ST DA+ +I + I + + A + G I QVPPMFSA
Sbjct: 69 LDADKAYTATLKLGEASSTGDAEGEIIAAARAD-ISLAEFQTACQALTGNIRQVPPMFSA 127
Query: 427 IK 428
+K
Sbjct: 128 LK 129
>gi|254466206|ref|ZP_05079617.1| tRNA pseudouridine synthase B [Rhodobacterales bacterium Y4I]
gi|206687114|gb|EDZ47596.1| tRNA pseudouridine synthase B [Rhodobacterales bacterium Y4I]
Length = 300
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 57/118 (48%), Positives = 75/118 (63%), Gaps = 1/118 (0%)
Query: 312 VLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIK 371
++V+KP G TS V K+R + KK GHAGTLDP ATG+L V +G+ATK V +K
Sbjct: 14 LVVDKPAGLTSTAVVNKVRWALDAKKAGHAGTLDPEATGVLAVALGEATKTVPYITDALK 73
Query: 372 GYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
Y+ RLG+AT+T DA+ VI + DE I++A F GEI QVPP FSA+K+
Sbjct: 74 AYTFTVRLGQATNTDDAEGEVIAQSD-ARPTDEQIKEALLPFLGEIMQVPPKFSAVKI 130
>gi|421907104|ref|ZP_16336992.1| tRNA pseudouridine 55 synthase [Neisseria meningitidis alpha704]
gi|393292068|emb|CCI72965.1| tRNA pseudouridine 55 synthase [Neisseria meningitidis alpha704]
Length = 316
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 71/118 (60%), Gaps = 1/118 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP+G +S T K RRL +K GH G LDP+ATGLL VC G+ATK
Sbjct: 23 VLLLDKPEGLSSNTALQKARRLFHAEKAGHTGVLDPLATGLLPVCFGEATKFAQYLLDAD 82
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y+ +LGEA+ST DA+ +I + I + + A + G I QVPPMFSA+K
Sbjct: 83 KAYTATLKLGEASSTGDAEGEIIATARAD-ISLAEFQTACQALTGNIRQVPPMFSALK 139
>gi|433536991|ref|ZP_20493496.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis 77221]
gi|432273927|gb|ELL29024.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis 77221]
Length = 306
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 72/122 (59%), Gaps = 1/122 (0%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P ++L++KP+G +S T K RRL + +K GH G LDP+ATGLL VC G+A K
Sbjct: 9 PVNGVLLLDKPEGLSSNTALQKARRLFRAEKAGHTGVLDPLATGLLPVCFGEAAKFAQYL 68
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
K Y+ +LGEA+ST DA+ ++ + I + + A + G I QVPPMFSA
Sbjct: 69 LDADKAYTATLKLGEASSTGDAEGKIVATARAD-ISLAEFQTACQALTGNIRQVPPMFSA 127
Query: 427 IK 428
+K
Sbjct: 128 LK 129
>gi|218768392|ref|YP_002342904.1| tRNA pseudouridine synthase B [Neisseria meningitidis Z2491]
gi|385338224|ref|YP_005892097.1| tRNA pseudouridine synthase B (tRNA pseudouridine 55 synthase;
Psi55 synthase; tRNA-uridine isomerase; tRNA
pseudouridylate synthase) [Neisseria meningitidis WUE
2594]
gi|421550868|ref|ZP_15996869.1| tRNA pseudouridine synthase B [Neisseria meningitidis 69166]
gi|433467516|ref|ZP_20424970.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis 87255]
gi|433471552|ref|ZP_20428938.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis 68094]
gi|433475095|ref|ZP_20432436.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis 88050]
gi|433477819|ref|ZP_20435139.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis 70012]
gi|433479752|ref|ZP_20437042.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis 63041]
gi|433513693|ref|ZP_20470483.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis 63049]
gi|433517766|ref|ZP_20474512.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis 96023]
gi|433520148|ref|ZP_20476868.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis 65014]
gi|433524123|ref|ZP_20480784.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis 97020]
gi|433526067|ref|ZP_20482697.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis 69096]
gi|433539153|ref|ZP_20495629.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis 70030]
gi|433541226|ref|ZP_20497678.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis 63006]
gi|13959594|sp|Q9JTX5.1|TRUB_NEIMA RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|121052400|emb|CAM08732.1| tRNA pseudouridine synthase B [Neisseria meningitidis Z2491]
gi|319410638|emb|CBY91007.1| tRNA pseudouridine synthase B (tRNA pseudouridine 55 synthase;
Psi55 synthase; tRNA-uridine isomerase; tRNA
pseudouridylate synthase) [Neisseria meningitidis WUE
2594]
gi|402329405|gb|EJU64766.1| tRNA pseudouridine synthase B [Neisseria meningitidis 69166]
gi|432202350|gb|ELK58414.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis 87255]
gi|432208404|gb|ELK64382.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis 68094]
gi|432210913|gb|ELK66868.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis 88050]
gi|432215484|gb|ELK71373.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis 70012]
gi|432216091|gb|ELK71973.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis 63041]
gi|432247225|gb|ELL02664.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis 63049]
gi|432253502|gb|ELL08846.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis 96023]
gi|432254870|gb|ELL10204.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis 65014]
gi|432259367|gb|ELL14638.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis 97020]
gi|432260831|gb|ELL16088.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis 69096]
gi|432273515|gb|ELL28613.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis 70030]
gi|432277239|gb|ELL32288.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis 63006]
Length = 306
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 72/122 (59%), Gaps = 1/122 (0%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P ++L++KP+G +S T K R L + +K GH G LDP+ATGLL VC G+ATK
Sbjct: 9 PVNGVLLLDKPEGLSSNTALQKTRHLFRAEKAGHTGVLDPLATGLLPVCFGEATKFAQYL 68
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
K Y+ +LGEA+ST DA+ ++ + I + + A + G I QVPPMFSA
Sbjct: 69 INADKAYTATLKLGEASSTGDAEGEIVATARAD-ISLAEFQTACQALTGNIRQVPPMFSA 127
Query: 427 IK 428
+K
Sbjct: 128 LK 129
>gi|326771728|ref|ZP_08231013.1| tRNA pseudouridine synthase B [Actinomyces viscosus C505]
gi|326637861|gb|EGE38762.1| tRNA pseudouridine synthase B [Actinomyces viscosus C505]
Length = 357
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 73/121 (60%), Gaps = 2/121 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+KP+G TS V G RRL +KVGHAGTLDPMATGLL++ +G+AT+ + G
Sbjct: 27 LLVVDKPQGLTSHDVVGATRRLAATRKVGHAGTLDPMATGLLLLGIGRATRFLTYLVGAD 86
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPW--EHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y RLG T+T DAD +I E + + +++ + G I QVP SAIK
Sbjct: 87 KTYEATVRLGVETTTEDADGQIIAARGCRIEDLPEGRLQEVLTALTGPIQQVPSAVSAIK 146
Query: 429 V 429
V
Sbjct: 147 V 147
>gi|421563574|ref|ZP_16009393.1| tRNA pseudouridine synthase B [Neisseria meningitidis NM2795]
gi|402341270|gb|EJU76457.1| tRNA pseudouridine synthase B [Neisseria meningitidis NM2795]
Length = 307
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 71/118 (60%), Gaps = 1/118 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP+G +S T K RRL +K GH G LDP+ATGLL VC G+ATK
Sbjct: 14 VLLLDKPEGLSSNTALQKARRLFHAEKAGHTGVLDPLATGLLPVCFGEATKFAQYLLDAD 73
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y+ +LGEA+ST DA+ +I + I + + A + G I QVPPMFSA+K
Sbjct: 74 KAYTATLKLGEASSTGDAEGEIIATARAD-ISLAEFQTACQALTGNIRQVPPMFSALK 130
>gi|365824521|ref|ZP_09366595.1| hypothetical protein HMPREF0045_00231 [Actinomyces graevenitzii
C83]
gi|365259581|gb|EHM89566.1| hypothetical protein HMPREF0045_00231 [Actinomyces graevenitzii
C83]
Length = 389
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 65/139 (46%), Positives = 80/139 (57%), Gaps = 6/139 (4%)
Query: 291 PYIVSRSTELPPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATG 350
P V+R P DG ++LV+K G TS V ++RRL +KVGHAGTLDPMATG
Sbjct: 57 PVDVARGAVTAP--DG----LLLVDKDLGITSHDVVSRVRRLAATRKVGHAGTLDPMATG 110
Query: 351 LLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAA 410
LL V VGKAT+L++ G K Y RLG T T DA V Q + + ++ AA
Sbjct: 111 LLTVGVGKATRLLNYLVGADKTYEATIRLGVGTDTEDAHGQVTQVVAPDQVDLARLQAAA 170
Query: 411 ASFRGEIWQVPPMFSAIKV 429
A G+I QVP FSAIKV
Sbjct: 171 AQLTGQISQVPSSFSAIKV 189
>gi|417931279|ref|ZP_12574647.1| tRNA pseudouridine synthase B [Propionibacterium acnes SK182B-JCVI]
gi|340776018|gb|EGR98068.1| tRNA pseudouridine synthase B [Propionibacterium acnes SK182B-JCVI]
Length = 295
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 71/119 (59%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+KP G TS V G++RRL+ +KVGHAGTLDPMA G+LIV + +AT+L+
Sbjct: 8 ILVVDKPAGVTSHQVVGRVRRLMGTRKVGHAGTLDPMANGVLIVGINRATRLLGHLSLHD 67
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ RLG T T DA+ V I DE I A G+I QVP SAIKV
Sbjct: 68 KDYTATMRLGVGTVTDDAEGEVTATTDASAIDDEAIGAAMLRQTGQIQQVPTAVSAIKV 126
>gi|218442003|ref|YP_002380332.1| tRNA pseudouridine synthase B [Cyanothece sp. PCC 7424]
gi|226708667|sp|B7KGX7.1|TRUB_CYAP7 RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|218174731|gb|ACK73464.1| tRNA pseudouridine synthase B [Cyanothece sp. PCC 7424]
Length = 308
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 69/114 (60%), Gaps = 1/114 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+NKP GWTS K+RRL+K+K+VGH GTLDP ATG+L + VGKAT+L+ + K Y
Sbjct: 14 LNKPGGWTSHDCVAKIRRLLKIKRVGHGGTLDPAATGVLPIAVGKATRLLP-FLPEKKAY 72
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAI 427
RLG T+T D ++Q H+ E I F GEI Q+PP FSAI
Sbjct: 73 QARIRLGVTTNTDDLQGEILQIGSANHLTLEQIDPLLRQFIGEIEQIPPAFSAI 126
>gi|444335627|ref|YP_007391996.1| tRNA pseudouridine synthase B [Blattabacterium sp. (Blatta
orientalis) str. Tarazona]
gi|444300006|gb|AGD98243.1| tRNA pseudouridine synthase B [Blattabacterium sp. (Blatta
orientalis) str. Tarazona]
Length = 226
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 80/125 (64%), Gaps = 6/125 (4%)
Query: 311 MVLVNKPKGWTSFTVCGKLRR-----LVKVKKVGHAGTLDPMATGLLIVCVGKA-TKLVD 364
++L++KP GWTSF V +R+ L K K+GHAGTLDP+ATGLLI+ +G+ TK D
Sbjct: 14 LLLIDKPWGWTSFKVVKIIRKKIRNFLGKNLKIGHAGTLDPLATGLLIILIGREYTKKTD 73
Query: 365 RYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMF 424
Q K Y+G+ +LG T ++D+++ HI E +++ + F+GEI Q+PP F
Sbjct: 74 SIQNYKKTYTGIIKLGCTTQSFDSETEEYNFSSTSHITPELVQEISKKFKGEIDQIPPSF 133
Query: 425 SAIKV 429
SA+++
Sbjct: 134 SALRM 138
>gi|296117682|ref|ZP_06836266.1| tRNA pseudouridine synthase B [Corynebacterium ammoniagenes DSM
20306]
gi|295969413|gb|EFG82654.1| tRNA pseudouridine synthase B [Corynebacterium ammoniagenes DSM
20306]
Length = 288
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 69/119 (57%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V ++RR +KVGHAGTLDPMATG+LI+ + + TK +
Sbjct: 6 LVVVDKPAGMTSHDVVSRVRREFGTRKVGHAGTLDPMATGVLILGIERGTKFLAHMVAAT 65
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y RLG +T+T D +S ++ HI D + + A GEI Q P SAIK+
Sbjct: 66 KAYEATIRLGASTTTDDFESDILSETSAAHITDSQVHEEIAKLSGEIMQKPAKVSAIKI 124
>gi|228902313|ref|ZP_04066470.1| tRNA pseudouridine synthase B [Bacillus thuringiensis IBL 4222]
gi|434376913|ref|YP_006611557.1| tRNA pseudouridine synthase B [Bacillus thuringiensis HD-789]
gi|228857282|gb|EEN01785.1| tRNA pseudouridine synthase B [Bacillus thuringiensis IBL 4222]
gi|401875470|gb|AFQ27637.1| tRNA pseudouridine synthase B [Bacillus thuringiensis HD-789]
Length = 307
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 53/120 (44%), Positives = 75/120 (62%), Gaps = 1/120 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKVLREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + + I ++I K A G I Q PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETKNIDRAITRKEIEKVLAELTGTIEQKPPMFSAVKV 123
>gi|438000058|ref|YP_007183791.1| tRNA pseudouridine55 synthase [Candidatus Kinetoplastibacterium
blastocrithidii (ex Strigomonas culicis)]
gi|451812987|ref|YP_007449440.1| tRNA pseudouridine synthase B [Candidatus Kinetoplastibacterium
blastocrithidii TCC012E]
gi|429339292|gb|AFZ83714.1| tRNA pseudouridine55 synthase [Candidatus Kinetoplastibacterium
blastocrithidii (ex Strigomonas culicis)]
gi|451778956|gb|AGF49836.1| tRNA pseudouridine synthase B [Candidatus Kinetoplastibacterium
blastocrithidii TCC012E]
Length = 237
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 74/126 (58%), Gaps = 5/126 (3%)
Query: 304 WDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLV 363
+DG F L++K G TS + K+RR + +KK GH GTLDP ATGLL+ C GKATK+
Sbjct: 6 FDGFF----LLDKSAGITSSSALQKVRRFLNIKKAGHTGTLDPFATGLLVCCFGKATKIS 61
Query: 364 DRYQGMIKGYSGVFRLGEATSTWDADSPVIQR-EPWEHIKDEDIRKAAASFRGEIWQVPP 422
+ + K Y +LGE T T D ++ + ++ I+ I K F GEI Q+PP
Sbjct: 62 NIFLNSSKSYIATIKLGEETDTGDLTGQIVSKSSSYKFIEMPFIEKTLNYFIGEIEQIPP 121
Query: 423 MFSAIK 428
M+SA+K
Sbjct: 122 MYSALK 127
>gi|385328640|ref|YP_005882943.1| tRNA pseudouridine synthase B [Neisseria meningitidis alpha710]
gi|308389492|gb|ADO31812.1| tRNA pseudouridine synthase B [Neisseria meningitidis alpha710]
Length = 316
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 72/118 (61%), Gaps = 1/118 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP+G +S T K RRL +K GH G LDP+ATGLL VC G+ATK
Sbjct: 23 VLLLDKPEGLSSNTALQKARRLFHAEKAGHTGVLDPLATGLLPVCFGEATKFAQYLLDAD 82
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y+ +LGEA+ST DA+ ++ + I + + A + G+I QVPPMFSA+K
Sbjct: 83 KAYTATLKLGEASSTGDAEGEIVATARAD-ISLAEFQTACKALTGDIRQVPPMFSALK 139
>gi|227544946|ref|ZP_03974995.1| pseudouridylate synthase [Lactobacillus reuteri CF48-3A]
gi|338204306|ref|YP_004650451.1| tRNA pseudouridine synthase B [Lactobacillus reuteri SD2112]
gi|227185057|gb|EEI65128.1| pseudouridylate synthase [Lactobacillus reuteri CF48-3A]
gi|336449546|gb|AEI58161.1| tRNA pseudouridine synthase B [Lactobacillus reuteri SD2112]
Length = 301
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 52/115 (45%), Positives = 70/115 (60%), Gaps = 1/115 (0%)
Query: 316 KPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSG 375
K +G TSF +LR+++K KK+GH+GTLDP G+L +CVG ATK+VD K Y G
Sbjct: 9 KERGMTSFACVSRLRQILKTKKIGHSGTLDPGVAGVLPICVGNATKVVDYLMQSGKQYQG 68
Query: 376 VFRLGEATSTWDADSPVIQ-REPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
+G AT+T D D I+ +E I +I A S G I Q+PPM+SA+KV
Sbjct: 69 ELLIGFATTTQDLDGEKIEDKEVTNEIPTSEILSAMNSLTGTIIQIPPMYSAVKV 123
>gi|121635080|ref|YP_975325.1| tRNA pseudouridine synthase B [Neisseria meningitidis FAM18]
gi|120866786|emb|CAM10539.1| tRNA pseudouridine synthase B [Neisseria meningitidis FAM18]
Length = 319
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 71/118 (60%), Gaps = 1/118 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP+G +S T K RRL +K GH G LDP+ATGLL VC G+ATK
Sbjct: 23 VLLLDKPEGLSSNTALQKARRLFHAEKAGHTGVLDPLATGLLPVCFGEATKFAQYLLDAD 82
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y+ +LGEA+ST DA+ +I + I + + A + G I QVPPMFSA+K
Sbjct: 83 KAYTATLKLGEASSTGDAEGEIIATARAD-ISLAEFQTACQALTGNIRQVPPMFSALK 139
>gi|421202102|ref|ZP_15659254.1| tRNA pseudouridine synthase B [Acinetobacter baumannii AC12]
gi|421535099|ref|ZP_15981363.1| tRNA pseudouridine synthase B [Acinetobacter baumannii AC30]
gi|398328408|gb|EJN44534.1| tRNA pseudouridine synthase B [Acinetobacter baumannii AC12]
gi|409986979|gb|EKO43168.1| tRNA pseudouridine synthase B [Acinetobacter baumannii AC30]
Length = 301
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 69/116 (59%)
Query: 313 LVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKG 372
L+NKP G +S K+R L + +K GH G LDP+ATGLL +C+G+ATK K
Sbjct: 18 LLNKPLGQSSNAALQKVRWLYRAQKAGHTGALDPLATGLLPICLGEATKFSHYLLDSTKR 77
Query: 373 YSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
Y RLG+ T+T D + ++Q P + E I + FRG+I QVPPM+SA+K
Sbjct: 78 YQTTVRLGQTTTTGDVEGDILQERPIPVLSKELIEQTLEKFRGDIQQVPPMYSALK 133
>gi|325854959|ref|ZP_08171675.1| tRNA pseudouridine synthase B [Prevotella denticola CRIS 18C-A]
gi|325483937|gb|EGC86877.1| tRNA pseudouridine synthase B [Prevotella denticola CRIS 18C-A]
Length = 233
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 54/134 (40%), Positives = 77/134 (57%), Gaps = 8/134 (5%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK-----KVGHAGTLDPMATGLLIVCVGKATKLV 363
G ++ ++KP G TSF +R L K+GHAGTLDP+ATG+LI+ GK TK +
Sbjct: 6 GVVIPIDKPYGITSFKALAHIRYLCTQANDGKVKIGHAGTLDPLATGVLILATGKMTKQI 65
Query: 364 DRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPM 423
+ Q K Y+ F+LG T ++D + V P EHI E I + F G+I Q+PP
Sbjct: 66 ETLQAHTKEYTATFQLGATTPSYDMEHEVNGTFPTEHITRELIDETLPRFVGDIEQIPPT 125
Query: 424 FSAIKV---RVFHF 434
+SA+KV R F++
Sbjct: 126 YSAVKVDGKRAFNY 139
>gi|304382489|ref|ZP_07364984.1| tRNA pseudouridine synthase B [Prevotella marshii DSM 16973]
gi|304336320|gb|EFM02561.1| tRNA pseudouridine synthase B [Prevotella marshii DSM 16973]
Length = 233
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 53/127 (41%), Positives = 77/127 (60%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLV----KVKKV--GHAGTLDPMATGLLIVCVGKATKL 362
G ++ ++KP G TSF ++R L+ +VK+V GHAGTLDP+ATG+LI+C GKATK
Sbjct: 6 GEIICIDKPYGMTSFGALARVRYLISKRLRVKRVKTGHAGTLDPLATGVLILCTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ Q K Y+ +LG T ++D + V P HI + I + F+G+I Q PP
Sbjct: 66 IEALQLHTKEYTATLQLGATTPSYDMEHAVDATFPTAHITRQLIEETLKQFQGDITQKPP 125
Query: 423 MFSAIKV 429
+SA KV
Sbjct: 126 TYSACKV 132
>gi|427739100|ref|YP_007058644.1| tRNA pseudouridine synthase B [Rivularia sp. PCC 7116]
gi|427374141|gb|AFY58097.1| tRNA pseudouridine synthase B [Rivularia sp. PCC 7116]
Length = 292
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 51/116 (43%), Positives = 74/116 (63%), Gaps = 1/116 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
++KP WTS K RRL+ +KK+GHAGTLDP ATG+L + +GK+T+L+ +Y K Y
Sbjct: 7 LDKPFDWTSHDCVAKTRRLLGIKKIGHAGTLDPAATGVLPIAIGKSTRLL-QYLPSNKAY 65
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
RLG T+T D VIQ++ + E + +A F+G+I Q+PP +SAI+V
Sbjct: 66 KATIRLGMQTTTDDLQGDVIQQDAISELNLETVARALKQFQGKIEQIPPSYSAIQV 121
>gi|212639518|ref|YP_002316038.1| tRNA pseudouridine synthase [Anoxybacillus flavithermus WK1]
gi|212560998|gb|ACJ34053.1| tRNA pseudouridine synthase [Anoxybacillus flavithermus WK1]
Length = 314
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 75/120 (62%), Gaps = 1/120 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP G TS ++R+L + KKVGH GTLDP +G+L +C+GKATK+V+
Sbjct: 20 VLLLHKPAGMTSHDCVMRIRKLFQTKKVGHTGTLDPDVSGVLPICIGKATKIVELLTAEK 79
Query: 371 KGYSGVFRLGEATSTWDADSPVIQ-REPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG AT+T DA ++ ++ I +I + A GEI Q+PPM+SA+KV
Sbjct: 80 KTYEGEVTLGIATTTEDASGDIVSIKQIGRPITRHEIERVFAELTGEIEQIPPMYSAVKV 139
>gi|365902661|ref|ZP_09440484.1| tRNA pseudouridine synthase B [Lactobacillus malefermentans KCTC
3548]
Length = 303
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 74/120 (61%), Gaps = 1/120 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K +G TS +LRR++ KK+GH+GTLDP G+L +CVG ATK+VD
Sbjct: 4 IIPLYKERGMTSHDCVNQLRRILHTKKIGHSGTLDPNVDGVLPICVGSATKVVDYLMTFG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVI-QREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T D D V+ +R+ E D+ + A A GEI Q+PPM+SA+KV
Sbjct: 64 KTYRGTITLGFSTTTEDLDGDVVEERKLPEPFNDDQLASAMAMLTGEIIQIPPMYSAVKV 123
>gi|343522879|ref|ZP_08759845.1| tRNA pseudouridine synthase B [Actinomyces sp. oral taxon 175 str.
F0384]
gi|343402288|gb|EGV14794.1| tRNA pseudouridine synthase B [Actinomyces sp. oral taxon 175 str.
F0384]
Length = 365
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 72/121 (59%), Gaps = 2/121 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+KP+G TS V G RRL +KVGHAGTLDPMATGLL++ +G+AT+ + G
Sbjct: 33 ILVVDKPQGLTSHDVVGATRRLAATRKVGHAGTLDPMATGLLLLGIGRATRFLTYLVGAD 92
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPW--EHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y RLG T+T DAD ++ + + +R+A G I QVP SAIK
Sbjct: 93 KTYEATVRLGVETTTEDADGQIVAARGCRPSDLPEGRLREALTGLTGPIQQVPSAVSAIK 152
Query: 429 V 429
V
Sbjct: 153 V 153
>gi|404486942|ref|ZP_11022129.1| tRNA pseudouridine synthase B [Barnesiella intestinihominis YIT
11860]
gi|404335438|gb|EJZ61907.1| tRNA pseudouridine synthase B [Barnesiella intestinihominis YIT
11860]
Length = 239
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 52/127 (40%), Positives = 76/127 (59%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLV------KVKKVGHAGTLDPMATGLLIVCVGKATKL 362
G ++ ++KP WTSF V ++R + K KVGHAGTLDP+ATG++I+C G+ATK
Sbjct: 6 GEIIYIDKPLHWTSFDVVKRIRLRILRRIKQKKLKVGHAGTLDPLATGVMIICTGRATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y RLG T ++D ++ + P EHI E + + F G I Q+PP
Sbjct: 66 IEEFQYQTKEYIATLRLGATTPSFDLETEIDGVYPHEHITRESVERTLPRFVGSIMQIPP 125
Query: 423 MFSAIKV 429
+SA KV
Sbjct: 126 SYSACKV 132
>gi|297191718|ref|ZP_06909116.1| tRNA pseudouridine synthase B [Streptomyces pristinaespiralis ATCC
25486]
gi|197721426|gb|EDY65334.1| tRNA pseudouridine synthase B [Streptomyces pristinaespiralis ATCC
25486]
Length = 299
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 71/119 (59%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G+TS V K+R + + ++VGHAGTLDPMATG+L++ V KATKL+
Sbjct: 11 LVIVDKPSGFTSHDVVAKMRGIARTRRVGHAGTLDPMATGVLVLGVEKATKLLGHLALTE 70
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G RLG+ T T DA+ V + E I A G+I QVP SAIK+
Sbjct: 71 KEYLGTIRLGQDTVTDDAEGEVTSSTDASAVTREAIDAGVAGLTGDIMQVPSKVSAIKI 129
>gi|456738613|gb|EMF63180.1| tRNA pseudouridine synthase B [Propionibacterium acnes FZ1/2/0]
Length = 295
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 71/119 (59%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+KP G TS V G++RRL+ +KVGHAGTLDPMA+G+L+V V +AT+L+
Sbjct: 8 VLVVDKPAGVTSHQVVGRVRRLMGTRKVGHAGTLDPMASGVLVVGVNRATRLLGHLSLHD 67
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ RLG T T DA+ V I D I A GEI QVP SAIKV
Sbjct: 68 KDYTATVRLGVGTVTDDAEGDVTVTTDASAIDDTAIHAAMVRQTGEIQQVPAAVSAIKV 126
>gi|16078729|ref|NP_389548.1| tRNA pseudouridine synthase B [Bacillus subtilis subsp. subtilis
str. 168]
gi|221309544|ref|ZP_03591391.1| tRNA pseudouridine 55 synthase [Bacillus subtilis subsp. subtilis
str. 168]
gi|221313868|ref|ZP_03595673.1| tRNA pseudouridine 55 synthase [Bacillus subtilis subsp. subtilis
str. NCIB 3610]
gi|221318791|ref|ZP_03600085.1| tRNA pseudouridine 55 synthase [Bacillus subtilis subsp. subtilis
str. JH642]
gi|221323063|ref|ZP_03604357.1| tRNA pseudouridine 55 synthase [Bacillus subtilis subsp. subtilis
str. SMY]
gi|402775912|ref|YP_006629856.1| tRNA pseudouridine 55 synthase [Bacillus subtilis QB928]
gi|452913838|ref|ZP_21962465.1| tRNA pseudouridine(55) synthase [Bacillus subtilis MB73/2]
gi|3183559|sp|P32732.2|TRUB_BACSU RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|2634038|emb|CAB13539.1| tRNA pseudouridine 55 synthase [Bacillus subtilis subsp. subtilis
str. 168]
gi|402483461|gb|AFQ59970.1| TRNA pseudouridine 55 synthase [Bacillus subtilis QB928]
gi|407959073|dbj|BAM52313.1| tRNA pseudouridine synthase B [Synechocystis sp. PCC 6803]
gi|407964650|dbj|BAM57889.1| tRNA pseudouridine synthase B [Bacillus subtilis BEST7003]
gi|452116258|gb|EME06653.1| tRNA pseudouridine(55) synthase [Bacillus subtilis MB73/2]
Length = 309
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 75/120 (62%), Gaps = 1/120 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP G TS K+R+L+K KKVGH GTLDP +G+L +CVG+ATK+V+
Sbjct: 5 VLLLHKPVGMTSHDCVMKIRKLLKTKKVGHTGTLDPEVSGVLPICVGRATKIVEYLTEKS 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y LG +T+T D ++ +P H I D+ K S +G+ Q+PPM+SA+KV
Sbjct: 65 KTYDAEITLGFSTTTEDQTGETVETKPVNHDIDKADVEKVLNSLKGKQEQIPPMYSAVKV 124
>gi|325677949|ref|ZP_08157591.1| tRNA pseudouridine synthase B [Ruminococcus albus 8]
gi|324110503|gb|EGC04677.1| tRNA pseudouridine synthase B [Ruminococcus albus 8]
Length = 303
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 57/116 (49%), Positives = 70/116 (60%), Gaps = 1/116 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V KP WTSF V KLR ++ V+K+GH GTLDPMA G+L V VG+ATK D K Y
Sbjct: 13 VYKPMDWTSFDVVAKLRGVLHVRKIGHGGTLDPMAEGVLPVLVGQATKACDVMPDTEKEY 72
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
FR G AT T D VI+R + + ++ A F GEI QVPPM+SA+KV
Sbjct: 73 IAEFRTGIATDTQDITGEVIKRSS-KRVSIRELADALPEFVGEIMQVPPMYSAVKV 127
>gi|386382795|ref|ZP_10068377.1| tRNA pseudouridine synthase B [Streptomyces tsukubaensis NRRL18488]
gi|385669741|gb|EIF92902.1| tRNA pseudouridine synthase B [Streptomyces tsukubaensis NRRL18488]
Length = 299
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 54/132 (40%), Positives = 77/132 (58%), Gaps = 4/132 (3%)
Query: 298 TELPPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVG 357
T+ P DG +V+V+KP G+TS V K+R + + ++VGHAGTLDPMATG+L++ +
Sbjct: 2 TQRTPAPDG----LVIVDKPSGFTSHDVVAKMRGIARTRRVGHAGTLDPMATGVLVLGIE 57
Query: 358 KATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEI 417
+ATKL+ K Y G RLG++T T DA+ + + E I A+ G I
Sbjct: 58 RATKLLGHLALTEKEYLGTIRLGQSTVTDDAEGEITASADASGVTREAIGTGVAALSGAI 117
Query: 418 WQVPPMFSAIKV 429
QVP SAIK+
Sbjct: 118 MQVPSKVSAIKI 129
>gi|289428642|ref|ZP_06430325.1| tRNA pseudouridine synthase B [Propionibacterium acnes J165]
gi|354607754|ref|ZP_09025722.1| tRNA pseudouridine synthase B [Propionibacterium sp. 5_U_42AFAA]
gi|386024449|ref|YP_005942754.1| tRNA pseudouridine synthase B [Propionibacterium acnes 266]
gi|407935900|ref|YP_006851542.1| tRNA pseudouridine synthase B [Propionibacterium acnes C1]
gi|422385570|ref|ZP_16465702.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL096PA3]
gi|422430612|ref|ZP_16507492.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL072PA2]
gi|422449643|ref|ZP_16526367.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL036PA3]
gi|422479986|ref|ZP_16556390.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL063PA1]
gi|422481351|ref|ZP_16557751.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL036PA1]
gi|422487422|ref|ZP_16563754.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL013PA2]
gi|422491389|ref|ZP_16567703.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL020PA1]
gi|422497073|ref|ZP_16573350.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL002PA3]
gi|422503273|ref|ZP_16579514.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL027PA2]
gi|422505452|ref|ZP_16581682.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL036PA2]
gi|422506956|ref|ZP_16583174.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL046PA2]
gi|422512869|ref|ZP_16588996.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL087PA2]
gi|422533718|ref|ZP_16609649.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL072PA1]
gi|422551157|ref|ZP_16626952.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL005PA3]
gi|422555517|ref|ZP_16631285.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL005PA2]
gi|422566796|ref|ZP_16642424.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL002PA2]
gi|289158040|gb|EFD06260.1| tRNA pseudouridine synthase B [Propionibacterium acnes J165]
gi|313807930|gb|EFS46411.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL087PA2]
gi|313819716|gb|EFS57430.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL046PA2]
gi|313822178|gb|EFS59892.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL036PA1]
gi|313823588|gb|EFS61302.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL036PA2]
gi|313825912|gb|EFS63626.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL063PA1]
gi|314924667|gb|EFS88498.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL036PA3]
gi|314962064|gb|EFT06165.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL002PA2]
gi|314978841|gb|EFT22935.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL072PA2]
gi|314986501|gb|EFT30593.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL005PA2]
gi|314990859|gb|EFT34950.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL005PA3]
gi|315083474|gb|EFT55450.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL027PA2]
gi|315087160|gb|EFT59136.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL002PA3]
gi|315089331|gb|EFT61307.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL072PA1]
gi|327329751|gb|EGE71507.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL096PA3]
gi|327446437|gb|EGE93091.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL013PA2]
gi|328752192|gb|EGF65808.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL020PA1]
gi|332675907|gb|AEE72723.1| tRNA pseudouridine synthase B [Propionibacterium acnes 266]
gi|353556300|gb|EHC25671.1| tRNA pseudouridine synthase B [Propionibacterium sp. 5_U_42AFAA]
gi|407904481|gb|AFU41311.1| tRNA pseudouridine synthase B [Propionibacterium acnes C1]
Length = 295
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 71/119 (59%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+KP G TS V G++RRL+ +KVGHAGTLDPMA+G+L+V V +AT+L+
Sbjct: 8 VLVVDKPAGVTSHQVVGRVRRLMGTRKVGHAGTLDPMASGVLVVGVNRATRLLGHLSLHD 67
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ RLG T T DA+ V I D I A GEI QVP SAIKV
Sbjct: 68 KDYTATVRLGVGTVTDDAEGDVTVTTDASAIDDRAIHAAMVRQTGEIQQVPAAVSAIKV 126
>gi|421557472|ref|ZP_16003377.1| tRNA pseudouridine synthase B [Neisseria meningitidis 80179]
gi|421567722|ref|ZP_16013456.1| tRNA pseudouridine synthase B [Neisseria meningitidis NM3001]
gi|402335110|gb|EJU70385.1| tRNA pseudouridine synthase B [Neisseria meningitidis 80179]
gi|402343755|gb|EJU78901.1| tRNA pseudouridine synthase B [Neisseria meningitidis NM3001]
Length = 307
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 72/118 (61%), Gaps = 1/118 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP+G +S T K RRL +K GH G LDP+ATGLL VC G+ATK
Sbjct: 14 VLLLDKPEGLSSNTALQKARRLFHAEKAGHTGVLDPLATGLLPVCFGEATKFAQYLLDAD 73
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y+ +LGEA+ST DA+ ++ + I + + A + G+I QVPPMFSA+K
Sbjct: 74 KAYTATLKLGEASSTGDAEGEIVATARAD-ISLAEFQTACKALTGDIRQVPPMFSALK 130
>gi|390629757|ref|ZP_10257749.1| tRNA pseudouridine synthase B [Weissella confusa LBAE C39-2]
gi|390484929|emb|CCF30097.1| tRNA pseudouridine synthase B [Weissella confusa LBAE C39-2]
Length = 303
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 55/117 (47%), Positives = 73/117 (62%), Gaps = 1/117 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V K G TS V KLR+++ +KK+GHAGTLDP G+L V +GKATK ++ Q K Y
Sbjct: 7 VYKETGMTSHDVVFKLRKILHMKKIGHAGTLDPSVDGVLPVALGKATKTIEFLQESGKIY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
+G G AT+T D D V++ +P DE+I A A G+I Q+PPMFSA+KV
Sbjct: 67 TGEVTFGFATTTEDLDGEVVESQPLTRPFTDEEIADAMAKLTGDIIQIPPMFSAVKV 123
>gi|50842956|ref|YP_056183.1| tRNA pseudouridine synthase B [Propionibacterium acnes KPA171202]
gi|289426461|ref|ZP_06428204.1| tRNA pseudouridine synthase B [Propionibacterium acnes SK187]
gi|295131027|ref|YP_003581690.1| tRNA pseudouridine synthase B [Propionibacterium acnes SK137]
gi|335054425|ref|ZP_08547240.1| tRNA pseudouridine synthase B [Propionibacterium sp. 434-HC2]
gi|365963177|ref|YP_004944743.1| tRNA pseudouridine synthase B [Propionibacterium acnes TypeIA2
P.acn31]
gi|365965418|ref|YP_004946983.1| tRNA pseudouridine synthase B [Propionibacterium acnes TypeIA2
P.acn17]
gi|365974354|ref|YP_004955913.1| tRNA pseudouridine synthase B [Propionibacterium acnes TypeIA2
P.acn33]
gi|387503857|ref|YP_005945086.1| tRNA pseudouridine synthase B [Propionibacterium acnes 6609]
gi|417930286|ref|ZP_12573665.1| tRNA pseudouridine synthase B [Propionibacterium acnes SK182]
gi|422387782|ref|ZP_16467893.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL096PA2]
gi|422393704|ref|ZP_16473754.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL099PA1]
gi|422425559|ref|ZP_16502493.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL043PA1]
gi|422427432|ref|ZP_16504348.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL087PA1]
gi|422432602|ref|ZP_16509471.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL059PA2]
gi|422434231|ref|ZP_16511091.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL083PA2]
gi|422438681|ref|ZP_16515519.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL092PA1]
gi|422444276|ref|ZP_16521071.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL002PA1]
gi|422447024|ref|ZP_16523762.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL027PA1]
gi|422451356|ref|ZP_16528059.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL030PA2]
gi|422453510|ref|ZP_16530206.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL087PA3]
gi|422456189|ref|ZP_16532857.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL030PA1]
gi|422462650|ref|ZP_16539272.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL038PA1]
gi|422473596|ref|ZP_16550070.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL056PA1]
gi|422477299|ref|ZP_16553732.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL007PA1]
gi|422486027|ref|ZP_16562384.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL043PA2]
gi|422491949|ref|ZP_16568259.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL086PA1]
gi|422499417|ref|ZP_16575681.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL063PA2]
gi|422509971|ref|ZP_16586122.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL059PA1]
gi|422516820|ref|ZP_16592928.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL110PA2]
gi|422517318|ref|ZP_16593418.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL074PA1]
gi|422521209|ref|ZP_16597241.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL045PA1]
gi|422522684|ref|ZP_16598705.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL053PA2]
gi|422525715|ref|ZP_16601716.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL083PA1]
gi|422528930|ref|ZP_16604905.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL053PA1]
gi|422530544|ref|ZP_16606503.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL110PA1]
gi|422536724|ref|ZP_16612627.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL078PA1]
gi|422540284|ref|ZP_16616153.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL013PA1]
gi|422542280|ref|ZP_16618132.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL037PA1]
gi|422544477|ref|ZP_16620315.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL082PA1]
gi|422547175|ref|ZP_16622997.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL050PA3]
gi|422548561|ref|ZP_16624373.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL050PA1]
gi|422557180|ref|ZP_16632925.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL025PA2]
gi|422560334|ref|ZP_16636024.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL005PA1]
gi|422563884|ref|ZP_16639556.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL046PA1]
gi|422571224|ref|ZP_16646817.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL067PA1]
gi|422579469|ref|ZP_16654991.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL005PA4]
gi|54036453|sp|Q6A7P0.1|TRUB_PROAC RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|50840558|gb|AAT83225.1| tRNA pseudouridine synthase B [Propionibacterium acnes KPA171202]
gi|289153189|gb|EFD01907.1| tRNA pseudouridine synthase B [Propionibacterium acnes SK187]
gi|291376936|gb|ADE00791.1| tRNA pseudouridine synthase B [Propionibacterium acnes SK137]
gi|313763609|gb|EFS34973.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL013PA1]
gi|313773546|gb|EFS39512.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL074PA1]
gi|313794004|gb|EFS42028.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL110PA1]
gi|313801390|gb|EFS42641.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL110PA2]
gi|313811599|gb|EFS49313.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL083PA1]
gi|313816789|gb|EFS54503.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL059PA1]
gi|313829592|gb|EFS67306.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL063PA2]
gi|313831341|gb|EFS69055.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL007PA1]
gi|313834951|gb|EFS72665.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL056PA1]
gi|313839888|gb|EFS77602.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL086PA1]
gi|314914764|gb|EFS78595.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL005PA4]
gi|314919274|gb|EFS83105.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL050PA1]
gi|314920815|gb|EFS84646.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL050PA3]
gi|314930494|gb|EFS94325.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL067PA1]
gi|314954348|gb|EFS98754.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL027PA1]
gi|314957467|gb|EFT01570.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL002PA1]
gi|314963643|gb|EFT07743.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL082PA1]
gi|314968526|gb|EFT12624.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL037PA1]
gi|314974216|gb|EFT18312.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL053PA1]
gi|314976674|gb|EFT20769.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL045PA1]
gi|314984313|gb|EFT28405.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL005PA1]
gi|315079496|gb|EFT51489.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL053PA2]
gi|315081276|gb|EFT53252.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL078PA1]
gi|315095355|gb|EFT67331.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL038PA1]
gi|315099237|gb|EFT71213.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL059PA2]
gi|315100456|gb|EFT72432.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL046PA1]
gi|315106796|gb|EFT78772.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL030PA1]
gi|315109036|gb|EFT81012.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL030PA2]
gi|327328382|gb|EGE70144.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL096PA2]
gi|327444167|gb|EGE90821.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL043PA2]
gi|327444952|gb|EGE91606.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL043PA1]
gi|327451975|gb|EGE98629.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL092PA1]
gi|327454988|gb|EGF01643.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL087PA3]
gi|327457723|gb|EGF04378.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL083PA2]
gi|328755179|gb|EGF68795.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL087PA1]
gi|328758342|gb|EGF71958.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL025PA2]
gi|328760040|gb|EGF73620.1| tRNA pseudouridine synthase B [Propionibacterium acnes HL099PA1]
gi|333764932|gb|EGL42307.1| tRNA pseudouridine synthase B [Propionibacterium sp. 434-HC2]
gi|335277902|gb|AEH29807.1| tRNA pseudouridine synthase B [Propionibacterium acnes 6609]
gi|340772413|gb|EGR94917.1| tRNA pseudouridine synthase B [Propionibacterium acnes SK182]
gi|365739858|gb|AEW84060.1| tRNA pseudouridine synthase B [Propionibacterium acnes TypeIA2
P.acn31]
gi|365742099|gb|AEW81793.1| tRNA pseudouridine synthase B [Propionibacterium acnes TypeIA2
P.acn17]
gi|365744353|gb|AEW79550.1| tRNA pseudouridine synthase B [Propionibacterium acnes TypeIA2
P.acn33]
Length = 295
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 71/119 (59%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+KP G TS V G++RRL+ +KVGHAGTLDPMA+G+L+V V +AT+L+
Sbjct: 8 VLVVDKPAGVTSHQVVGRVRRLMGTRKVGHAGTLDPMASGVLVVGVNRATRLLGHLSLHD 67
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ RLG T T DA+ V I D I A GEI QVP SAIKV
Sbjct: 68 KDYTATVRLGVGTVTDDAEGDVTVTTDASAIDDRAIHAAMVRQTGEIQQVPAAVSAIKV 126
>gi|59801069|ref|YP_207781.1| tRNA pseudouridine synthase B [Neisseria gonorrhoeae FA 1090]
gi|268601530|ref|ZP_06135697.1| tRNA pseudouridine synthase B [Neisseria gonorrhoeae PID18]
gi|291043623|ref|ZP_06569339.1| tRNA pseudouridine synthase B [Neisseria gonorrhoeae DGI2]
gi|62901144|sp|Q5F8W8.1|TRUB_NEIG1 RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|59717964|gb|AAW89369.1| putative tRNA pseudouridine synthase B [Neisseria gonorrhoeae FA
1090]
gi|268585661|gb|EEZ50337.1| tRNA pseudouridine synthase B [Neisseria gonorrhoeae PID18]
gi|291012086|gb|EFE04075.1| tRNA pseudouridine synthase B [Neisseria gonorrhoeae DGI2]
Length = 306
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 71/122 (58%), Gaps = 1/122 (0%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P ++L++KP+G +S T K RRL +K GH G LDP+ATGLL VC G+A K
Sbjct: 9 PVNGVLLLDKPEGLSSNTALQKARRLFHAEKAGHTGVLDPLATGLLPVCFGEAAKFAQYL 68
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
K Y+ +LGEA+ST DA+ +I + I + + A + G I QVPPMFSA
Sbjct: 69 LDADKAYTATLKLGEASSTGDAEGEIIAAARAD-ISLAEFQTACQALTGNIRQVPPMFSA 127
Query: 427 IK 428
+K
Sbjct: 128 LK 129
>gi|421565521|ref|ZP_16011294.1| tRNA pseudouridine synthase B [Neisseria meningitidis NM3081]
gi|402343956|gb|EJU79098.1| tRNA pseudouridine synthase B [Neisseria meningitidis NM3081]
Length = 307
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 72/118 (61%), Gaps = 1/118 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP+G +S T K RRL +K GH G LDP+ATGLL VC G+ATK
Sbjct: 14 VLLLDKPEGLSSNTALQKARRLFHAEKAGHTGVLDPLATGLLPVCFGEATKFAQYLLDAD 73
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y+ +LGEA+ST DA+ ++ + I + + A + G+I QVPPMFSA+K
Sbjct: 74 KAYTATLKLGEASSTGDAEGEIVATARAD-ISLAEFQTACKALTGDIRQVPPMFSALK 130
>gi|327313348|ref|YP_004328785.1| tRNA pseudouridine synthase B [Prevotella denticola F0289]
gi|326944728|gb|AEA20613.1| tRNA pseudouridine synthase B [Prevotella denticola F0289]
Length = 233
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 54/134 (40%), Positives = 77/134 (57%), Gaps = 8/134 (5%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK-----KVGHAGTLDPMATGLLIVCVGKATKLV 363
G ++ ++KP G TSF +R L K+GHAGTLDP+ATG+LI+ GK TK +
Sbjct: 6 GVVIPIDKPYGITSFKALAHIRYLCTQANDGKVKIGHAGTLDPLATGVLILATGKMTKQI 65
Query: 364 DRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPM 423
+ Q K Y+ F+LG T ++D + V P EHI E I + F G+I Q+PP
Sbjct: 66 ETLQAHTKEYTATFQLGATTPSYDMEHEVNGTFPTEHITRELIDETLPRFVGDIEQIPPT 125
Query: 424 FSAIKV---RVFHF 434
+SA+KV R F++
Sbjct: 126 YSAVKVDGKRAFNY 139
>gi|421538321|ref|ZP_15984498.1| tRNA pseudouridine synthase B [Neisseria meningitidis 93003]
gi|402317140|gb|EJU52679.1| tRNA pseudouridine synthase B [Neisseria meningitidis 93003]
Length = 307
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 73/118 (61%), Gaps = 1/118 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP+G +S T K RRL + +K GH G LDP+ATGLL VC G+ATK
Sbjct: 14 VLLLDKPEGLSSNTALQKARRLFRAEKAGHTGVLDPLATGLLPVCFGEATKFSQYLLDAD 73
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y+ +LGEA+ST DA+ ++ + I + + A + G+I QVPPMFSA+K
Sbjct: 74 KAYTATLKLGEASSTGDAEGEIVATARAD-ISLAEFQTACKALTGDIRQVPPMFSALK 130
>gi|416177863|ref|ZP_11610232.1| tRNA pseudouridine synthase B [Neisseria meningitidis M6190]
gi|416191844|ref|ZP_11616272.1| tRNA pseudouridine synthase B [Neisseria meningitidis ES14902]
gi|433492767|ref|ZP_20449860.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis NM586]
gi|433494901|ref|ZP_20451969.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis NM762]
gi|433497067|ref|ZP_20454105.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis M7089]
gi|433499129|ref|ZP_20456138.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis M7124]
gi|433501105|ref|ZP_20458091.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis NM174]
gi|433503121|ref|ZP_20460082.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis NM126]
gi|325132433|gb|EGC55126.1| tRNA pseudouridine synthase B [Neisseria meningitidis M6190]
gi|325138421|gb|EGC60989.1| tRNA pseudouridine synthase B [Neisseria meningitidis ES14902]
gi|432228553|gb|ELK84253.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis NM586]
gi|432230104|gb|ELK85783.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis NM762]
gi|432233560|gb|ELK89187.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis M7089]
gi|432234963|gb|ELK90583.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis M7124]
gi|432236396|gb|ELK92005.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis NM174]
gi|432239886|gb|ELK95430.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis NM126]
Length = 310
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 71/118 (60%), Gaps = 1/118 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP+G +S T K RRL +K GH G LDP+ATGLL VC G+ATK
Sbjct: 14 VLLLDKPEGLSSNTALQKARRLFHAEKAGHTGVLDPLATGLLPVCFGEATKFAQYLLDAD 73
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y+ +LGEA+ST DA+ +I + I + + A + G I QVPPMFSA+K
Sbjct: 74 KAYTATLKLGEASSTGDAEGEIIATARAD-ISLAEFQTACQALTGNIRQVPPMFSALK 130
>gi|268686801|ref|ZP_06153663.1| tRNA pseudouridine synthase B [Neisseria gonorrhoeae SK-93-1035]
gi|268627085|gb|EEZ59485.1| tRNA pseudouridine synthase B [Neisseria gonorrhoeae SK-93-1035]
Length = 306
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 71/122 (58%), Gaps = 1/122 (0%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P ++L++KP+G +S T K RRL +K GH G LDP+ATGLL VC G+A K
Sbjct: 9 PVNGVLLLDKPEGLSSNTALQKARRLFHAEKAGHTGVLDPLATGLLPVCFGEAAKFAQYL 68
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
K Y+ +LGEA+ST DA+ +I + I + + A + G I QVPPMFSA
Sbjct: 69 IDADKAYTATLKLGEASSTGDAEGEIIAAARAD-ISLAEFQTACQALTGNIRQVPPMFSA 127
Query: 427 IK 428
+K
Sbjct: 128 LK 129
>gi|240013972|ref|ZP_04720885.1| putative tRNA pseudouridine synthase B [Neisseria gonorrhoeae
DGI18]
gi|240016414|ref|ZP_04722954.1| putative tRNA pseudouridine synthase B [Neisseria gonorrhoeae
FA6140]
gi|240121539|ref|ZP_04734501.1| putative tRNA pseudouridine synthase B [Neisseria gonorrhoeae
PID24-1]
Length = 306
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 71/122 (58%), Gaps = 1/122 (0%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P ++L++KP+G +S T K RRL +K GH G LDP+ATGLL VC G+A K
Sbjct: 9 PVNGVLLLDKPEGLSSNTALQKARRLFHAEKAGHTGVLDPLATGLLPVCFGEAAKFAQYL 68
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
K Y+ +LGEA+ST DA+ +I + I + + A + G I QVPPMFSA
Sbjct: 69 IDADKAYTATLKLGEASSTGDAEGEIIAAARAD-ISLAEFQTACQALTGNIRQVPPMFSA 127
Query: 427 IK 428
+K
Sbjct: 128 LK 129
>gi|222097254|ref|YP_002531311.1| tRNA pseudouridine synthase b [Bacillus cereus Q1]
gi|221241312|gb|ACM14022.1| tRNA pseudouridine synthase B [Bacillus cereus Q1]
Length = 307
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 77/120 (64%), Gaps = 1/120 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + + I +++ + A+ G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETKYVDRVITRKEVEEVLAALTGTIEQMPPMFSAVKV 123
>gi|335040859|ref|ZP_08533980.1| tRNA pseudouridine synthase B [Caldalkalibacillus thermarum TA2.A1]
gi|334179294|gb|EGL81938.1| tRNA pseudouridine synthase B [Caldalkalibacillus thermarum TA2.A1]
Length = 300
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 55/126 (43%), Positives = 77/126 (61%), Gaps = 1/126 (0%)
Query: 306 GPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDR 365
G ++++NKPKG TS +R+L K KKVGH GTLDP TG+L +C+G+ATK+
Sbjct: 2 GNLTGILVLNKPKGMTSHDCVLAVRKLAKTKKVGHTGTLDPEVTGVLPICLGRATKIAQF 61
Query: 366 YQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDED-IRKAAASFRGEIWQVPPMF 424
K Y +LG AT+T D VI+ +P +H E + +A + F GEI Q PPM+
Sbjct: 62 LTEKEKEYIAEVKLGYATTTEDHTGDVIEEKPVDHPPTEQAVLEALSQFMGEIKQTPPMY 121
Query: 425 SAIKVR 430
SA+KV+
Sbjct: 122 SAVKVK 127
>gi|78184120|ref|YP_376555.1| tRNA pseudouridine synthase B [Synechococcus sp. CC9902]
gi|78168414|gb|ABB25511.1| tRNA pseudouridine synthase B [Synechococcus sp. CC9902]
Length = 302
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 76/128 (59%), Gaps = 2/128 (1%)
Query: 302 PTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATK 361
P DGPFG V+++KP G TS ++RR +++VGH GTLDP TG+L + +G AT+
Sbjct: 2 PPLDGPFG-FVVIDKPAGLTSHACVSRMRRSYGLRRVGHGGTLDPAVTGVLPIALGPATR 60
Query: 362 LVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVP 421
L+ G K Y G +LG +S+ D +++ +PW + ++ +A A FRG I Q P
Sbjct: 61 LLPYLPGE-KTYQGSIQLGTRSSSDDLQGEILETQPWPELSNQGCLEALAPFRGTIQQRP 119
Query: 422 PMFSAIKV 429
P SA+ V
Sbjct: 120 PQVSAVHV 127
>gi|354615318|ref|ZP_09033103.1| tRNA pseudouridine synthase B, partial [Saccharomonospora
paurometabolica YIM 90007]
gi|353220336|gb|EHB84789.1| tRNA pseudouridine synthase B, partial [Saccharomonospora
paurometabolica YIM 90007]
Length = 248
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 75/122 (61%), Gaps = 3/122 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+KP G TS V K RRL+ +KVGHAGTLDPMATG+L++ + +ATKL+
Sbjct: 14 LLIVDKPSGMTSHDVVAKARRLLGTRKVGHAGTLDPMATGVLVLGIERATKLLGHLSLDR 73
Query: 371 KGYSGVFRLGEATSTWDADSPVIQR---EPWEHIKDEDIRKAAASFRGEIWQVPPMFSAI 427
K Y LG AT+T DA+ V+ + + + D+ +R A + GEI QVP SA+
Sbjct: 74 KTYLATVVLGSATTTDDAEGEVLSEADPQAVDAVSDDAVRAAVTALTGEIDQVPSAVSAV 133
Query: 428 KV 429
KV
Sbjct: 134 KV 135
>gi|241895999|ref|ZP_04783295.1| pseudouridylate synthase [Weissella paramesenteroides ATCC 33313]
gi|241870730|gb|EER74481.1| pseudouridylate synthase [Weissella paramesenteroides ATCC 33313]
Length = 336
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 55/120 (45%), Positives = 77/120 (64%), Gaps = 1/120 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K KG TS V KLRR++K+KK+GHAGTLDP G+L V +GKATK ++ Q
Sbjct: 37 IIPIYKDKGMTSHDVVFKLRRILKMKKIGHAGTLDPNVDGVLPVALGKATKTIEFLQETG 96
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPW-EHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+G LG AT+T D D VIQ + + +++I K + G I Q+PPM+SA+KV
Sbjct: 97 KIYTGSITLGIATTTEDMDGDVIQTQHLVKPFSNDEINKGMRTLTGHITQIPPMYSAVKV 156
>gi|428316636|ref|YP_007114518.1| tRNA pseudouridine synthase B [Oscillatoria nigro-viridis PCC 7112]
gi|428240316|gb|AFZ06102.1| tRNA pseudouridine synthase B [Oscillatoria nigro-viridis PCC 7112]
Length = 313
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 73/116 (62%), Gaps = 1/116 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+NKP G TS G++RRL+K+K+VGH GTLDP TG+L + +GKAT+L+ +Y K Y
Sbjct: 9 LNKPAGMTSHDCVGRVRRLLKLKRVGHGGTLDPAVTGVLPIALGKATRLL-QYLQHNKAY 67
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
G R G T+T D + ++ P + E ++ A +F G+I Q PP FSA++V
Sbjct: 68 RGTIRFGLTTATDDLEGEILHSRPVPELSLEQVQAALPNFIGKIEQFPPSFSAVQV 123
>gi|229086362|ref|ZP_04218539.1| tRNA pseudouridine synthase B [Bacillus cereus Rock3-44]
gi|228696974|gb|EEL49782.1| tRNA pseudouridine synthase B [Bacillus cereus Rock3-44]
Length = 307
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 74/120 (61%), Gaps = 1/120 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +C+G+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICIGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++++ I ++ A G I QVPPM+SA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVEKQDVNRIITRSEVEAVLAELTGTIEQVPPMYSAVKV 123
>gi|89898351|ref|YP_515461.1| tRNA pseudouridine synthase B [Chlamydophila felis Fe/C-56]
gi|123483297|sp|Q254H2.1|TRUB_CHLFF RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|89331723|dbj|BAE81316.1| tRNA pseudouridine synthase B [Chlamydophila felis Fe/C-56]
Length = 235
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 53/120 (44%), Positives = 80/120 (66%), Gaps = 2/120 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVG-KATKLVDRYQGM 369
++LV+KP+G TSF++ L +L+ VKK+GHAGTLDP ATG++++ +G K T+L D
Sbjct: 11 ILLVDKPQGRTSFSLIRTLTKLIGVKKIGHAGTLDPFATGVMVMLIGRKFTRLSDVLLFE 70
Query: 370 IKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ + LG T ++D D ++ R + E+I +AA F+GEI Q+PPMFSA K+
Sbjct: 71 DKEYAAIAHLGTTTDSYDCDGKIVGRSK-KVPTYEEILEAALYFQGEIQQIPPMFSAKKI 129
>gi|325281820|ref|YP_004254362.1| tRNA pseudouridine synthase B [Odoribacter splanchnicus DSM 20712]
gi|324313629|gb|ADY34182.1| tRNA pseudouridine synthase B [Odoribacter splanchnicus DSM 20712]
Length = 235
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 73/125 (58%), Gaps = 4/125 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK----KVGHAGTLDPMATGLLIVCVGKATKLVD 364
G ++LV+KP WTSF V K+R +K KVGHAGTLDP+ATGL+IVC GK TK ++
Sbjct: 15 GALILVDKPLKWTSFDVVNKIRWCLKSACGKIKVGHAGTLDPLATGLVIVCTGKWTKRIE 74
Query: 365 RYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMF 424
Y K Y G T ++D ++ P+ HI + + FRG I QVPP +
Sbjct: 75 DYMAQEKEYVATLCYGAVTPSFDLETLPEGDFPYRHIDRPYLDRVLERFRGVITQVPPAY 134
Query: 425 SAIKV 429
SAI+V
Sbjct: 135 SAIRV 139
>gi|300780971|ref|ZP_07090825.1| tRNA pseudouridine synthase B [Corynebacterium genitalium ATCC
33030]
gi|300532678|gb|EFK53739.1| tRNA pseudouridine synthase B [Corynebacterium genitalium ATCC
33030]
Length = 306
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 71/119 (59%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V +LRR +KVGHAGTLDPMATG+L+ + + TKL+
Sbjct: 19 IVVVDKPAGMTSHDVVAQLRRFFGTRKVGHAGTLDPMATGVLVAGIERGTKLLAHLVADD 78
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ RLG +T+T DA+ V+ + DE I + + GEI QVP SAIK+
Sbjct: 79 KVYATTIRLGASTTTDDAEGDVLAETDASTLTDEQIMEQVTALTGEIMQVPSKVSAIKI 137
>gi|254493897|ref|ZP_05107068.1| tRNA pseudouridine synthase B [Neisseria gonorrhoeae 1291]
gi|268594956|ref|ZP_06129123.1| tRNA pseudouridine synthase B [Neisseria gonorrhoeae 35/02]
gi|268596665|ref|ZP_06130832.1| tRNA pseudouridine synthase B [Neisseria gonorrhoeae FA19]
gi|268599184|ref|ZP_06133351.1| tRNA pseudouridine synthase B [Neisseria gonorrhoeae MS11]
gi|268603869|ref|ZP_06138036.1| tRNA pseudouridine synthase B [Neisseria gonorrhoeae PID1]
gi|268682333|ref|ZP_06149195.1| tRNA pseudouridine synthase B [Neisseria gonorrhoeae PID332]
gi|293398931|ref|ZP_06643096.1| tRNA pseudouridine synthase B [Neisseria gonorrhoeae F62]
gi|385335869|ref|YP_005889816.1| tRNA pseudouridine synthase B [Neisseria gonorrhoeae TCDC-NG08107]
gi|226512937|gb|EEH62282.1| tRNA pseudouridine synthase B [Neisseria gonorrhoeae 1291]
gi|268548345|gb|EEZ43763.1| tRNA pseudouridine synthase B [Neisseria gonorrhoeae 35/02]
gi|268550453|gb|EEZ45472.1| tRNA pseudouridine synthase B [Neisseria gonorrhoeae FA19]
gi|268583315|gb|EEZ47991.1| tRNA pseudouridine synthase B [Neisseria gonorrhoeae MS11]
gi|268588000|gb|EEZ52676.1| tRNA pseudouridine synthase B [Neisseria gonorrhoeae PID1]
gi|268622617|gb|EEZ55017.1| tRNA pseudouridine synthase B [Neisseria gonorrhoeae PID332]
gi|291610345|gb|EFF39455.1| tRNA pseudouridine synthase B [Neisseria gonorrhoeae F62]
gi|317164412|gb|ADV07953.1| tRNA pseudouridine synthase B [Neisseria gonorrhoeae TCDC-NG08107]
Length = 306
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 71/122 (58%), Gaps = 1/122 (0%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P ++L++KP+G +S T K RRL +K GH G LDP+ATGLL VC G+A K
Sbjct: 9 PVNGVLLLDKPEGLSSNTALQKARRLFHAEKAGHTGVLDPLATGLLPVCFGEAAKFAQYL 68
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
K Y+ +LGEA+ST DA+ +I + I + + A + G I QVPPMFSA
Sbjct: 69 LDADKAYTATLKLGEASSTGDAEGEIIAAARAD-ISLAEFQTACQALTGNIRQVPPMFSA 127
Query: 427 IK 428
+K
Sbjct: 128 LK 129
>gi|424852106|ref|ZP_18276503.1| tRNA pseudouridine synthase B [Rhodococcus opacus PD630]
gi|356666771|gb|EHI46842.1| tRNA pseudouridine synthase B [Rhodococcus opacus PD630]
Length = 305
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 74/119 (62%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++V+K G TS V + R+L+ +KVGHAGTLDPMATG+L++ V +ATKL+
Sbjct: 16 LLIVDKDAGVTSHDVVARCRKLLGTRKVGHAGTLDPMATGVLVLGVERATKLLGLLALTT 75
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ RLG+AT+T DA+ V+ + D++I + G+I Q+P SAIKV
Sbjct: 76 KAYTATIRLGQATTTDDAEGEVVASADASGVTDKEIAAQVRTLTGDIQQIPSSVSAIKV 134
>gi|354565080|ref|ZP_08984256.1| tRNA pseudouridine synthase B [Fischerella sp. JSC-11]
gi|353550206|gb|EHC19645.1| tRNA pseudouridine synthase B [Fischerella sp. JSC-11]
Length = 289
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 77/122 (63%), Gaps = 2/122 (1%)
Query: 308 FGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQ 367
FG + L NKP GWTS K R+L+++K+VGHAGTLDP ATG+L + +GKAT+L+
Sbjct: 2 FGFLNL-NKPFGWTSHDCVAKTRKLLRLKRVGHAGTLDPAATGVLPIALGKATRLLQYLP 60
Query: 368 GMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAI 427
G K Y RLG T+T D +I + ++ E ++ A F+G+I Q+PP +SAI
Sbjct: 61 GE-KAYQATIRLGVRTTTDDLQGEIIAEKSVTNVTLETVKTALQKFQGKIEQIPPSYSAI 119
Query: 428 KV 429
+V
Sbjct: 120 QV 121
>gi|238854737|ref|ZP_04645067.1| tRNA pseudouridine synthase B [Lactobacillus jensenii 269-3]
gi|260663969|ref|ZP_05864822.1| tRNA pseudouridine synthase B [Lactobacillus jensenii SJ-7A-US]
gi|313472261|ref|ZP_07812753.1| tRNA pseudouridine synthase B [Lactobacillus jensenii 1153]
gi|238832527|gb|EEQ24834.1| tRNA pseudouridine synthase B [Lactobacillus jensenii 269-3]
gi|239529656|gb|EEQ68657.1| tRNA pseudouridine synthase B [Lactobacillus jensenii 1153]
gi|260561855|gb|EEX27824.1| tRNA pseudouridine synthase B [Lactobacillus jensenii SJ-7A-US]
Length = 295
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 85/129 (65%), Gaps = 4/129 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++++NK KG TS V KLR+++K +KVGHAGTLDP G+L + +G+ATKL++
Sbjct: 5 ILVINKSKGMTSGDVVYKLRKILKTRKVGHAGTLDPEVEGVLPIAIGQATKLIELMHERP 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQR-EPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+G G +T ++D D V++R + E I + I++ SF G+I QVPP++SA+KV
Sbjct: 65 KSYTGRGLFGFSTDSYDTDGKVLKRKDVTEKISFDKIQEGMDSFLGKIDQVPPIYSAVKV 124
Query: 430 ---RVFHFS 435
R++ ++
Sbjct: 125 NGKRLYEYA 133
>gi|406039181|ref|ZP_11046536.1| tRNA pseudouridine synthase B [Acinetobacter ursingii DSM 16037 =
CIP 107286]
Length = 301
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 71/118 (60%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+ L+NKP G +S K+R L + +K GH G LDP+ATGLL +C+G+ATK
Sbjct: 16 VFLLNKPLGLSSNAALQKVRWLFRAQKAGHTGALDPLATGLLPICLGEATKFSHYLLDST 75
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y V +LGE TST D + +++R + + I + FRG+I Q+PPM+SA+K
Sbjct: 76 KRYQTVVKLGETTSTGDVEGEILKRRNVPALTRQSIEQVLDQFRGDIQQIPPMYSALK 133
>gi|224476399|ref|YP_002634005.1| tRNA pseudouridine synthase B [Staphylococcus carnosus subsp.
carnosus TM300]
gi|222421006|emb|CAL27820.1| putative tRNA pseudouridine synthase B [Staphylococcus carnosus
subsp. carnosus TM300]
Length = 304
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 72/118 (61%), Gaps = 2/118 (1%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V K +G TS V KLR+++ KKVGH GTLDP G+L VC+G ATK+ D M K Y
Sbjct: 7 VFKERGLTSHDVVFKLRKILHTKKVGHTGTLDPEVDGVLPVCIGNATKVSDYIMDMGKAY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWE--HIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
+G +T+T D V++R E + ++I A SF+GEI Q+PPM+S++KV
Sbjct: 67 EAEVTIGYSTTTEDQTGEVLERRNVEPDQLSTQEIDAAIQSFKGEIEQIPPMYSSVKV 124
>gi|229019004|ref|ZP_04175846.1| tRNA pseudouridine synthase B [Bacillus cereus AH1273]
gi|229025249|ref|ZP_04181671.1| tRNA pseudouridine synthase B [Bacillus cereus AH1272]
gi|423389883|ref|ZP_17367109.1| tRNA pseudouridine synthase B [Bacillus cereus BAG1X1-3]
gi|423418283|ref|ZP_17395372.1| tRNA pseudouridine synthase B [Bacillus cereus BAG3X2-1]
gi|228736077|gb|EEL86650.1| tRNA pseudouridine synthase B [Bacillus cereus AH1272]
gi|228742332|gb|EEL92490.1| tRNA pseudouridine synthase B [Bacillus cereus AH1273]
gi|401106556|gb|EJQ14517.1| tRNA pseudouridine synthase B [Bacillus cereus BAG3X2-1]
gi|401641974|gb|EJS59691.1| tRNA pseudouridine synthase B [Bacillus cereus BAG1X1-3]
Length = 307
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 75/120 (62%), Gaps = 1/120 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVGKATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGKATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + + I +++ A G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETKNVDRVITRKEVEDVLAKLTGTIEQMPPMFSAVKV 123
>gi|302558066|ref|ZP_07310408.1| tRNA pseudouridine synthase B [Streptomyces griseoflavus Tu4000]
gi|302475684|gb|EFL38777.1| tRNA pseudouridine synthase B [Streptomyces griseoflavus Tu4000]
Length = 301
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 72/119 (60%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G+TS V K+R + + ++VGHAGTLDPMATG+L++ V +ATKL+
Sbjct: 11 LVIVDKPSGFTSHDVVAKMRGIARTRRVGHAGTLDPMATGVLVLGVERATKLLGHLALTE 70
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G RLG+ T T DA+ +I I E + A G+I QVP SAIK+
Sbjct: 71 KEYLGTVRLGQNTLTDDAEGEIISSADASGITREAVDAGVAKLTGDIMQVPSKVSAIKI 129
>gi|422854032|ref|ZP_16900696.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK160]
gi|325696837|gb|EGD38725.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK160]
Length = 292
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 53/120 (44%), Positives = 75/120 (62%), Gaps = 1/120 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR+++K KK+GH GTLDP G+L + VGKAT+LV+ Q
Sbjct: 4 IINLKKEAGMTSHDAVFKLRKILKTKKIGHGGTLDPDVVGVLPIAVGKATRLVEFMQEEG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDED-IRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA +++R P + +E I +A S GEI Q+PPM+SA+KV
Sbjct: 64 KVYEGEITLGCSTTTEDASGDILERTPVTELLEEALIDEAMESMTGEIHQIPPMYSAVKV 123
>gi|423582020|ref|ZP_17558131.1| tRNA pseudouridine synthase B [Bacillus cereus VD014]
gi|401212899|gb|EJR19640.1| tRNA pseudouridine synthase B [Bacillus cereus VD014]
Length = 307
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 75/120 (62%), Gaps = 1/120 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V + + + I +++ K A G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVAETKNVDRTITRKEVEKVLAELTGTIEQMPPMFSAVKV 123
>gi|385323965|ref|YP_005878404.1| tRNA pseudouridine synthase B (tRNA pseudouridine 55 synthase;
Psi55 synthase; tRNA-uridine isomerase; tRNA
pseudouridylate synthase) [Neisseria meningitidis 8013]
gi|385340274|ref|YP_005894146.1| tRNA pseudouridine synthase B [Neisseria meningitidis G2136]
gi|416203628|ref|ZP_11620107.1| tRNA pseudouridine synthase B [Neisseria meningitidis 961-5945]
gi|421561454|ref|ZP_16007301.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis NM2657]
gi|433469567|ref|ZP_20426988.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis 98080]
gi|261392352|emb|CAX49890.1| tRNA pseudouridine synthase B (tRNA pseudouridine 55 synthase;
Psi55 synthase; tRNA-uridine isomerase; tRNA
pseudouridylate synthase) [Neisseria meningitidis 8013]
gi|325142572|gb|EGC64968.1| tRNA pseudouridine synthase B [Neisseria meningitidis 961-5945]
gi|325198518|gb|ADY93974.1| tRNA pseudouridine synthase B [Neisseria meningitidis G2136]
gi|402338385|gb|EJU73620.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis NM2657]
gi|432203837|gb|ELK59887.1| tRNA pseudouridine(55) synthase [Neisseria meningitidis 98080]
Length = 307
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 73/118 (61%), Gaps = 1/118 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP+G +S T K RRL + +K GH G LDP+ATGLL VC G+ATK
Sbjct: 14 VLLLDKPEGLSSNTALQKARRLFRAEKAGHTGVLDPLATGLLPVCFGEATKFSQYLLDAD 73
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y+ +LGEA+ST DA+ ++ + I + + A + G+I QVPPMFSA+K
Sbjct: 74 KAYTATLKLGEASSTGDAEGEIVATARAD-ISLAEFQTACKALTGDIRQVPPMFSALK 130
>gi|403745565|ref|ZP_10954360.1| tRNA pseudouridine synthase B [Alicyclobacillus hesperidum
URH17-3-68]
gi|403121283|gb|EJY55597.1| tRNA pseudouridine synthase B [Alicyclobacillus hesperidum
URH17-3-68]
Length = 304
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 73/119 (61%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++LV+KP G TS V K+R + +KVGHAGTLDP A+GLL++CVG AT+L++ +
Sbjct: 8 VLLVDKPVGPTSHDVVAKVRHKLGTRKVGHAGTLDPGASGLLMICVGNATRLLEYFTSAD 67
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+G G T T DA V ++ H+ D+RKAA +F G Q P +SA+ +
Sbjct: 68 KSYTGTVVFGIGTDTDDAAGSVTRQASAAHLTFADLRKAAEAFLGVTMQTVPAYSAVHI 126
>gi|325294578|ref|YP_004281092.1| tRNA pseudouridine synthase B [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065026|gb|ADY73033.1| tRNA pseudouridine synthase B [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 276
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 76/118 (64%), Gaps = 1/118 (0%)
Query: 313 LVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKG 372
+++KP G TS V ++R + +KK+GH GTLDP+ATGLLI+ VGKAT+ + K
Sbjct: 1 MIDKPSGITSTEVVRVIKRFLGIKKIGHTGTLDPLATGLLILAVGKATRFSEYLLKQDKC 60
Query: 373 YSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVR 430
Y R G ++ T+D D ++ P + IK ED+ K +F+GEI QVPP +SAI+++
Sbjct: 61 YVVKGRFGLSSDTYDIDGN-LKEVPCQEIKKEDLLKVLNNFKGEIEQVPPPYSAIRIK 117
>gi|229092850|ref|ZP_04223984.1| tRNA pseudouridine synthase B [Bacillus cereus Rock3-42]
gi|228690472|gb|EEL44255.1| tRNA pseudouridine synthase B [Bacillus cereus Rock3-42]
Length = 307
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 76/120 (63%), Gaps = 1/120 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + + I +++ A + G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETKHVDRVITRKEVEGALVTLTGTIEQMPPMFSAVKV 123
>gi|189499380|ref|YP_001958850.1| tRNA pseudouridine synthase B [Chlorobium phaeobacteroides BS1]
gi|189494821|gb|ACE03369.1| tRNA pseudouridine synthase B [Chlorobium phaeobacteroides BS1]
Length = 240
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 72/125 (57%), Gaps = 4/125 (3%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKV----KKVGHAGTLDPMATGLLIVCVGKATKL 362
P G +LV+KP WTSF V K+R +KVGH GTLDP A+GLLI+ G+ TK
Sbjct: 12 PTGDFLLVDKPVEWTSFDVVAKIRNTYTGAGLRRKVGHCGTLDPKASGLLILATGRKTKQ 71
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+ + + K Y GV +LG T ++DA+ P + H+ D +I AAA G Q PP
Sbjct: 72 IASLEVLDKTYEGVIKLGVMTESFDAELPEYGQCSVSHLTDREIHDAAAGLEGRCMQKPP 131
Query: 423 MFSAI 427
M+SA+
Sbjct: 132 MYSAV 136
>gi|254670018|emb|CBA04779.1| tRNA pseudouridine 55 synthase [Neisseria meningitidis alpha153]
Length = 316
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 73/118 (61%), Gaps = 1/118 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP+G +S T K RRL + +K GH G LDP+ATGLL VC G+ATK
Sbjct: 23 VLLLDKPEGLSSNTALQKARRLFRAEKAGHTGVLDPLATGLLPVCFGEATKFSQYLLDAD 82
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y+ +LGEA+ST DA+ ++ + I + + A + G+I QVPPMFSA+K
Sbjct: 83 KAYTATLKLGEASSTGDAEGEIVATARAD-ISLAEFQTACKALTGDIRQVPPMFSALK 139
>gi|455651679|gb|EMF30393.1| tRNA pseudouridine synthase B [Streptomyces gancidicus BKS 13-15]
Length = 302
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 72/119 (60%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G+TS V K+R + + ++VGHAGTLDPMATG+L++ V +ATKL+
Sbjct: 11 LVIVDKPSGFTSHDVVAKMRGIARTRRVGHAGTLDPMATGVLVLGVERATKLLGHLALTE 70
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G RLG+ T T DA+ + + E + A+ G+I QVP SAIK+
Sbjct: 71 KEYLGTIRLGQTTVTDDAEGEITASTDASQVTREAVDAGIAALTGDIMQVPSKVSAIKI 129
>gi|260583747|ref|ZP_05851495.1| tRNA pseudouridine synthase B [Granulicatella elegans ATCC 700633]
gi|260158373|gb|EEW93441.1| tRNA pseudouridine synthase B [Granulicatella elegans ATCC 700633]
Length = 300
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 56/124 (45%), Positives = 77/124 (62%), Gaps = 4/124 (3%)
Query: 316 KPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSG 375
K KG TSF K+RRL++ KKVGH+GTLDP G+L +CVGKATK+V+ K Y G
Sbjct: 9 KEKGMTSFDCVFKVRRLLQTKKVGHSGTLDPEVDGVLPICVGKATKVVEYLLESNKVYQG 68
Query: 376 VFRLGEATSTWDADSPVIQREP-WEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV---RV 431
LG AT T DA ++++E E+I +F GEI Q+PPM+SA+KV R+
Sbjct: 69 EICLGIATETEDAHGEIVKQEAIMTPFTTEEIDSMMETFIGEITQIPPMYSAVKVNGKRL 128
Query: 432 FHFS 435
+ ++
Sbjct: 129 YEYA 132
>gi|428279264|ref|YP_005560999.1| tRNA pseudouridine 55 synthase [Bacillus subtilis subsp. natto
BEST195]
gi|291484221|dbj|BAI85296.1| tRNA pseudouridine 55 synthase [Bacillus subtilis subsp. natto
BEST195]
Length = 309
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 75/120 (62%), Gaps = 1/120 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP G TS K+R+L+K KKVGH GTLDP +G+L +CVG+ATK+V+
Sbjct: 5 VLLLHKPVGMTSHDCVMKIRKLLKTKKVGHTGTLDPEVSGVLPICVGRATKIVEYLTEKS 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y LG +T+T D ++ +P H I D+ K S +G+ Q+PPM+SA+KV
Sbjct: 65 KTYDAEITLGFSTTTEDQTGETVEIKPVNHDIDKADVEKVLNSLKGKQEQIPPMYSAVKV 124
>gi|440699093|ref|ZP_20881399.1| tRNA pseudouridine synthase B [Streptomyces turgidiscabies Car8]
gi|440278428|gb|ELP66464.1| tRNA pseudouridine synthase B [Streptomyces turgidiscabies Car8]
Length = 302
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 71/119 (59%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G+TS V K+R + + ++VGHAGTLDPMATG+L++ V +ATKL+
Sbjct: 12 LVIVDKPSGFTSHDVVAKMRGIARTRRVGHAGTLDPMATGVLVLGVERATKLLGHLALTE 71
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G RLG+ T T DA+ +I + E + A G I QVP SAIK+
Sbjct: 72 KEYVGTVRLGQNTLTDDAEGEIISSTDASAVTREAVDAGVAKLTGRIMQVPSKVSAIKI 130
>gi|377564060|ref|ZP_09793387.1| tRNA pseudouridine synthase B [Gordonia sputi NBRC 100414]
gi|377528693|dbj|GAB38552.1| tRNA pseudouridine synthase B [Gordonia sputi NBRC 100414]
Length = 299
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 70/119 (58%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+K +G TS V + R+L ++VGHAGTLDPMATG+L+V V +ATKL+
Sbjct: 11 LVIVDKNEGITSHDVVSRCRKLFNTRRVGHAGTLDPMATGVLVVGVERATKLLGLLALTT 70
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ RLG AT + D VI I DE I A+ G+I QVP SAIKV
Sbjct: 71 KSYTATIRLGAATDSDDRMGEVISSADASSITDEQIAATVATLTGDIEQVPAKVSAIKV 129
>gi|217961230|ref|YP_002339798.1| tRNA pseudouridine synthase B [Bacillus cereus AH187]
gi|229140451|ref|ZP_04269006.1| tRNA pseudouridine synthase B [Bacillus cereus BDRD-ST26]
gi|423353512|ref|ZP_17331139.1| tRNA pseudouridine synthase B [Bacillus cereus IS075]
gi|423374393|ref|ZP_17351731.1| tRNA pseudouridine synthase B [Bacillus cereus AND1407]
gi|423567295|ref|ZP_17543542.1| tRNA pseudouridine synthase B [Bacillus cereus MSX-A12]
gi|217067797|gb|ACJ82047.1| tRNA pseudouridine synthase B [Bacillus cereus AH187]
gi|228643012|gb|EEK99288.1| tRNA pseudouridine synthase B [Bacillus cereus BDRD-ST26]
gi|401089325|gb|EJP97496.1| tRNA pseudouridine synthase B [Bacillus cereus IS075]
gi|401094305|gb|EJQ02387.1| tRNA pseudouridine synthase B [Bacillus cereus AND1407]
gi|401214383|gb|EJR21113.1| tRNA pseudouridine synthase B [Bacillus cereus MSX-A12]
Length = 307
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 76/120 (63%), Gaps = 1/120 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + + I +++ + A G I Q+PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETKHVDRVITRKEVEEVLAVLTGTIEQMPPMFSAVKV 123
>gi|328953962|ref|YP_004371296.1| tRNA pseudouridine synthase B [Desulfobacca acetoxidans DSM 11109]
gi|328454286|gb|AEB10115.1| tRNA pseudouridine synthase B [Desulfobacca acetoxidans DSM 11109]
Length = 304
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 52/117 (44%), Positives = 74/117 (63%), Gaps = 1/117 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++++KP G +SF V +RRL+KVKK+GH GTLDP A G+L +C+ +ATKLV
Sbjct: 8 IIVIDKPAGPSSFGVVKAVRRLLKVKKIGHLGTLDPFAVGVLPLCLNEATKLVPFLIDAP 67
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAI 427
K Y LG T+T D+ VI P + E++ + AA+F GE WQ PP+FSA+
Sbjct: 68 KTYRATIVLGTETNTQDSTGEVIAHCP-QLPAPEEVYRVAATFIGEQWQTPPLFSAL 123
>gi|420236633|ref|ZP_14741115.1| tRNA pseudouridine synthase B [Parascardovia denticolens IPLA
20019]
gi|391880256|gb|EIT88751.1| tRNA pseudouridine synthase B [Parascardovia denticolens IPLA
20019]
Length = 326
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 58/121 (47%), Positives = 75/121 (61%), Gaps = 1/121 (0%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQG 368
G MV V+KP+G TS V RRL+ +KVGHAGTLDPMATG+L++ GKAT+L++
Sbjct: 10 GVMV-VDKPQGVTSHDVVAAARRLLHTRKVGHAGTLDPMATGVLVLGFGKATRLLNVITD 68
Query: 369 MIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y V RLG+AT+T DA+ + I + I +AA G I QVP +SAIK
Sbjct: 69 ADKTYETVIRLGQATTTDDAEGELTGFFDLSAISRQMICEAAKKLTGRIQQVPSAYSAIK 128
Query: 429 V 429
V
Sbjct: 129 V 129
>gi|29829090|ref|NP_823724.1| tRNA pseudouridine synthase B [Streptomyces avermitilis MA-4680]
gi|37088246|sp|Q82K56.1|TRUB_STRAW RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|29606196|dbj|BAC70259.1| putative tRNA pseudouridine synthase [Streptomyces avermitilis
MA-4680]
Length = 301
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 71/119 (59%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G+TS V K+R + + ++VGHAGTLDPMATG+L++ V KATKL+
Sbjct: 11 LVIVDKPSGFTSHDVVAKMRGIARTRRVGHAGTLDPMATGVLVLGVEKATKLLGHLALTE 70
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G RLG+ T T DA+ +I + + I A G I QVP SAIK+
Sbjct: 71 KEYLGTIRLGQNTLTDDAEGEIISSTDASRVTRDAIDAGVAKLSGAIMQVPSKVSAIKI 129
>gi|422882068|ref|ZP_16928524.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK355]
gi|332361832|gb|EGJ39635.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK355]
Length = 292
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 53/120 (44%), Positives = 75/120 (62%), Gaps = 1/120 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR+++K KK+GH GTLDP G+L + VGKAT+LV+ Q
Sbjct: 4 IINLRKEAGMTSHDAVFKLRKILKTKKIGHGGTLDPDVVGVLPIAVGKATRLVEFMQEEG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDED-IRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA +++R P + +E I +A S GEI Q+PPM+SA+KV
Sbjct: 64 KVYEGEITLGYSTTTEDASGDILERTPVTELLEEALIDEAMESMTGEIRQIPPMYSAVKV 123
>gi|417090490|ref|ZP_11955987.1| tRNA pseudouridine synthase B [Streptococcus suis R61]
gi|353533625|gb|EHC03275.1| tRNA pseudouridine synthase B [Streptococcus suis R61]
Length = 284
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 50/110 (45%), Positives = 73/110 (66%)
Query: 320 WTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRL 379
TS V KLR++++ KK+GH GTLDP TG+L + VGKAT++++ Q K Y G L
Sbjct: 1 MTSHDVVFKLRKILQEKKIGHGGTLDPDVTGVLPIAVGKATRMIEYMQEEGKIYEGEITL 60
Query: 380 GEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
G +T+T DA ++++ P I ++ + KA ASF G I Q+PPM+SA+KV
Sbjct: 61 GYSTTTEDASGDLVEQTPVLEIAEQAVDKAMASFIGTITQIPPMYSAVKV 110
>gi|335429525|ref|ZP_08556423.1| tRNA pseudouridine synthase B [Haloplasma contractile SSD-17B]
gi|334889535|gb|EGM27820.1| tRNA pseudouridine synthase B [Haloplasma contractile SSD-17B]
Length = 301
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 74/120 (61%), Gaps = 1/120 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L+NKPK TS K+RR++ +KK+GH GTLDP TG+L +C+G+ATK++ Q
Sbjct: 6 ILLLNKPKKMTSHDCVSKMRRILGIKKIGHTGTLDPNVTGVLPLCIGEATKILQFLQADR 65
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWE-HIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y LG+ T+T D D I+ + + +I + F GEI QVPPM+SA+KV
Sbjct: 66 KEYIAEIYLGKKTTTEDLDGDTIEEDHSDKSFTRTEILDVLSQFSGEIKQVPPMYSAVKV 125
>gi|268608280|ref|ZP_06142007.1| tRNA pseudouridine synthase B [Ruminococcus flavefaciens FD-1]
Length = 297
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 76/119 (63%), Gaps = 1/119 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ VNKP+ +TSF V KLR ++K+K++GH GTLDPMATG+L V VG ATK VD +
Sbjct: 4 ILCVNKPQDFTSFDVVAKLRGILKMKRLGHGGTLDPMATGVLPVFVGNATKAVDIMPVTL 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ FRLG + T D ++ + + ++I FRG I Q+PPM+SA++V
Sbjct: 64 KSYTADFRLGFTSDTQDVWGNA-EKVSDKAVSPDEIEAVLPQFRGNIMQIPPMYSAVQV 121
>gi|300812544|ref|ZP_07092961.1| tRNA pseudouridine synthase B [Lactobacillus delbrueckii subsp.
bulgaricus PB2003/044-T3-4]
gi|300496417|gb|EFK31522.1| tRNA pseudouridine synthase B [Lactobacillus delbrueckii subsp.
bulgaricus PB2003/044-T3-4]
Length = 298
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 83/132 (62%), Gaps = 4/132 (3%)
Query: 308 FGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQ 367
F +++++K G TS V KLRRL+K KK+GHAGTLDP TG+L + +G+ATKL++
Sbjct: 2 FNGIIVIDKAAGMTSGDVVYKLRRLLKQKKIGHAGTLDPEVTGVLPIALGQATKLIELMH 61
Query: 368 GMIKGYSGVFRLGEATSTWDADSPVI-QREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
K Y G LG AT ++D + ++ +R + + D+ I+ A GEI Q PP++SA
Sbjct: 62 ERPKAYVGEGMLGLATDSYDLEGKILAERALSQPVSDQAIKAAMEKLTGEIVQQPPIYSA 121
Query: 427 IKV---RVFHFS 435
++V R++ ++
Sbjct: 122 VRVNGKRLYEYA 133
>gi|161870245|ref|YP_001599415.1| tRNA pseudouridine synthase B [Neisseria meningitidis 053442]
gi|161595798|gb|ABX73458.1| tRNA pseudouridine synthase B [Neisseria meningitidis 053442]
Length = 316
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 72/118 (61%), Gaps = 1/118 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP+G +S T K RRL + +K GH G LDP+ATGLL VC G+ATK
Sbjct: 23 VLLLDKPEGLSSNTALQKARRLFRAEKAGHTGVLDPLATGLLPVCFGEATKFSQYLLDAD 82
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y+ +LGEA+ST DA+ ++ + I + + A + G I QVPPMFSA+K
Sbjct: 83 KAYTATLKLGEASSTGDAEGEIVATARAD-ISLAEFQTACQALTGNIRQVPPMFSALK 139
>gi|411004802|ref|ZP_11381131.1| tRNA pseudouridine synthase B [Streptomyces globisporus C-1027]
Length = 299
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 56/132 (42%), Positives = 76/132 (57%), Gaps = 4/132 (3%)
Query: 298 TELPPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVG 357
TE T DG +V+V+KP G+TS V K+R + + ++VGHAGTLDPMATG+L++ V
Sbjct: 2 TEQTTTPDG----LVIVDKPSGFTSHDVVAKMRGIARTRRVGHAGTLDPMATGVLVLGVQ 57
Query: 358 KATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEI 417
+ATKL+ K Y G RLG+ T T DA+ + + E I A+ G I
Sbjct: 58 RATKLLGHLALTEKEYLGTIRLGQDTVTDDAEGEITSSTDASGVTREGIDAGVAALTGAI 117
Query: 418 WQVPPMFSAIKV 429
QVP SAIK+
Sbjct: 118 MQVPSKVSAIKI 129
>gi|322389230|ref|ZP_08062791.1| tRNA pseudouridine synthase B [Streptococcus parasanguinis ATCC
903]
gi|321144135|gb|EFX39552.1| tRNA pseudouridine synthase B [Streptococcus parasanguinis ATCC
903]
Length = 309
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 58/138 (42%), Positives = 81/138 (58%), Gaps = 5/138 (3%)
Query: 293 IVSRSTELPPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLL 352
+V++ E DG ++ V K G TS V KLR+++ KK+GH GTLDP G+L
Sbjct: 1 MVTQELERANQMDG----IINVKKEAGMTSHDVVFKLRKILGTKKIGHGGTLDPDVVGVL 56
Query: 353 IVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKD-EDIRKAAA 411
+ VGKAT++V+ Q K Y G LG +T+T DA V++R P E D ++ + A
Sbjct: 57 PIAVGKATRMVEFMQDEGKVYEGEITLGFSTTTEDASGEVVERTPVEAPLDAAEVDRMIA 116
Query: 412 SFRGEIWQVPPMFSAIKV 429
GEI QVPPM+SA+KV
Sbjct: 117 QMVGEIEQVPPMYSAVKV 134
>gi|266622970|ref|ZP_06115905.1| tRNA pseudouridine 55 synthase [Clostridium hathewayi DSM 13479]
gi|288865263|gb|EFC97561.1| tRNA pseudouridine 55 synthase [Clostridium hathewayi DSM 13479]
Length = 301
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 71/119 (59%), Gaps = 1/119 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ V K KG+TS V K+R ++K KK+GH GTLDP A G+L VC+G TKL D
Sbjct: 5 IINVYKEKGYTSHDVVAKMRGILKQKKIGHTGTLDPNAEGVLPVCLGNGTKLCDMLADRT 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y V LG T T D + P + +E++R A SF+G+ QVPPM+SA+KV
Sbjct: 65 KTYRAVLLLGLETDTQDTTGVTLAEYPVS-VTEEEVRAAVLSFQGDYEQVPPMYSALKV 122
>gi|404378483|ref|ZP_10983574.1| tRNA pseudouridine synthase B [Simonsiella muelleri ATCC 29453]
gi|294483610|gb|EFG31294.1| tRNA pseudouridine synthase B [Simonsiella muelleri ATCC 29453]
Length = 310
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 73/118 (61%), Gaps = 1/118 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP G +S K RRL +K GH G LDP+A+GLL VC+G+ATK
Sbjct: 13 VLLLDKPVGISSNLALQKARRLFNAEKAGHTGVLDPLASGLLPVCLGEATKFAQYLLDAD 72
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y+ +LGEAT+T DA+ +I + I+ D + A A+ GEI QVPPMFSA+K
Sbjct: 73 KAYTATLKLGEATTTGDAEGELIDVAD-KIIELIDFQAACAALTGEIRQVPPMFSALK 129
>gi|260592690|ref|ZP_05858148.1| tRNA pseudouridine synthase B [Prevotella veroralis F0319]
gi|260535460|gb|EEX18077.1| tRNA pseudouridine synthase B [Prevotella veroralis F0319]
Length = 232
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 52/126 (41%), Positives = 73/126 (57%), Gaps = 5/126 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK-----KVGHAGTLDPMATGLLIVCVGKATKLV 363
G ++ ++KP G TSF +R L K+GHAGTLDP+ATG+LI+ GK TK +
Sbjct: 6 GVIIPIDKPYGITSFKALAHVRYLCTQANDGKVKIGHAGTLDPLATGVLILATGKMTKQI 65
Query: 364 DRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPM 423
+ Q K Y +LG T ++D + V ++ P EHI E I K F G+I Q+PP
Sbjct: 66 ETLQAHTKEYVATLQLGATTPSYDMEHEVNEKFPVEHITRELIDKTLPQFVGDIEQIPPT 125
Query: 424 FSAIKV 429
+SA+KV
Sbjct: 126 YSAVKV 131
>gi|332283704|ref|YP_004415615.1| tRNA pseudouridine synthase B [Pusillimonas sp. T7-7]
gi|330427657|gb|AEC18991.1| tRNA pseudouridine synthase B [Pusillimonas sp. T7-7]
Length = 251
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 73/120 (60%), Gaps = 2/120 (1%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP+G +S + +R + +K GH GTLDP ATGLL+ C+G+ATK+ +
Sbjct: 12 VLLLDKPEGLSSNHALQRAKRALDARKAGHTGTLDPFATGLLVCCLGRATKISGKMLEAD 71
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREP--WEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
KGY RLGE T + D ++ + P ++ + + K FRGEI Q+PPM+SA+K
Sbjct: 72 KGYVATLRLGEETDSGDLTGNIVAQAPPEFKGVTQAEFEKVLPQFRGEIEQIPPMYSALK 131
>gi|126736192|ref|ZP_01751935.1| tRNA pseudouridine synthase B [Roseobacter sp. CCS2]
gi|126714358|gb|EBA11226.1| tRNA pseudouridine synthase B [Roseobacter sp. CCS2]
Length = 301
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 57/118 (48%), Positives = 74/118 (62%), Gaps = 1/118 (0%)
Query: 312 VLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIK 371
++V+KP G TS V K+R + KK GHAGTLDP ATG+L V +G+ATK V +K
Sbjct: 14 LVVDKPAGITSTAVVNKVRWAMDAKKAGHAGTLDPEATGVLAVALGEATKTVPYITDALK 73
Query: 372 GYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
YS + RLG+AT+T DA+ VI D I+ A +F G+I QVPP FSA+KV
Sbjct: 74 AYSFIVRLGQATNTDDAEGEVIATSDLRP-DDAAIKAALGAFVGDIMQVPPQFSAVKV 130
>gi|384511146|ref|YP_005690724.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
PAT10]
gi|341825085|gb|AEK92606.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
PAT10]
Length = 303
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 69/122 (56%), Gaps = 3/122 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V G+LRR+ K+VGHAGTLDPMATG+L+V + + TK +
Sbjct: 10 LVVVDKPAGMTSHDVVGRLRRIFGTKRVGHAGTLDPMATGVLVVGIERGTKFLAHMVAST 69
Query: 371 KGYSGVFRLGEATSTWDADSPVI---QREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAI 427
K Y RLG AT+T D + V+ I D DI +F G I Q P SAI
Sbjct: 70 KSYRATIRLGLATTTDDKEGEVVFSADASTLSAITDADIAAEITNFTGNIMQRPASVSAI 129
Query: 428 KV 429
K+
Sbjct: 130 KI 131
>gi|403378759|ref|ZP_10920816.1| tRNA pseudouridine synthase B [Paenibacillus sp. JC66]
Length = 302
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 51/116 (43%), Positives = 71/116 (61%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V KP +TS V K+RRL +K++GH GTLDP TG+L +C+G+AT++V+ Q M K Y
Sbjct: 9 VLKPVDYTSHDVVAKVRRLSGLKRIGHTGTLDPKVTGVLPLCLGRATRVVEYIQDMPKTY 68
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
+G AT T D +I R + E I + SF+G I Q+PPM+SA+KV
Sbjct: 69 EAQLTIGLATDTEDLTGEIIDRCEKVQVTREQIIETLQSFKGTIEQIPPMYSAVKV 124
>gi|406942192|gb|EKD74485.1| hypothetical protein ACD_44C00427G0009 [uncultured bacterium]
Length = 296
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 77/120 (64%), Gaps = 1/120 (0%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQG 368
G ++L++KP G +S K++R+ VKK GHAG LDP+ATG+L +C G+ATK +
Sbjct: 6 GNVLLLDKPIGLSSNNALQKVKRIYGVKKAGHAGNLDPLATGMLPICFGEATKFLQFLLN 65
Query: 369 MIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y F+LGE T+T DA+ +I+R +++ + + +F G+I Q+PPM+SA+K
Sbjct: 66 ADKSYRVEFKLGEKTNTGDAEGEIIERHAV-NVEYQQLSSVVNTFLGQIKQIPPMYSALK 124
>gi|260432188|ref|ZP_05786159.1| tRNA pseudouridine synthase B [Silicibacter lacuscaerulensis
ITI-1157]
gi|260416016|gb|EEX09275.1| tRNA pseudouridine synthase B [Silicibacter lacuscaerulensis
ITI-1157]
Length = 301
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/118 (48%), Positives = 74/118 (62%), Gaps = 1/118 (0%)
Query: 312 VLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIK 371
++V+KP G TS V K+R + KK GHAGTLDP ATG+L V +G+ATK V +K
Sbjct: 14 LVVDKPAGMTSTAVVNKVRWALDAKKAGHAGTLDPEATGVLAVALGEATKTVPYITDALK 73
Query: 372 GYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
Y+ RLG+AT+T DA+ VI DE I++A F GEI QVPP FSA+K+
Sbjct: 74 AYTFTVRLGQATNTDDAEGEVIAESDLRPTDDE-IKQALLPFVGEIMQVPPKFSAVKI 130
>gi|154506282|ref|ZP_02043020.1| hypothetical protein RUMGNA_03824 [Ruminococcus gnavus ATCC 29149]
gi|336431859|ref|ZP_08611700.1| hypothetical protein HMPREF0991_00819 [Lachnospiraceae bacterium
2_1_58FAA]
gi|153793421|gb|EDN75841.1| tRNA pseudouridine synthase B [Ruminococcus gnavus ATCC 29149]
gi|336019610|gb|EGN49333.1| hypothetical protein HMPREF0991_00819 [Lachnospiraceae bacterium
2_1_58FAA]
Length = 306
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/116 (45%), Positives = 69/116 (59%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V K KG+TS V KLR +V KK+GH GTLDP A G+L VC+G+ATK+ D K Y
Sbjct: 8 VYKEKGYTSHDVVAKLRGIVGQKKIGHTGTLDPDAEGVLPVCLGRATKVCDMLTEKDKTY 67
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
V LG+ T T D V++ E + E ++ SF GE Q+PPM+SA+KV
Sbjct: 68 EAVLLLGKETDTQDISGTVLRVGETEGLTQEQVKDCVMSFVGEYDQIPPMYSALKV 123
>gi|331006263|ref|ZP_08329583.1| tRNA pseudouridine synthase B [gamma proteobacterium IMCC1989]
gi|330419952|gb|EGG94298.1| tRNA pseudouridine synthase B [gamma proteobacterium IMCC1989]
Length = 314
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/127 (41%), Positives = 68/127 (53%)
Query: 302 PTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATK 361
P W P ++L+NK G TS K +RL K GH G+LDP+ATG+L +C G+ATK
Sbjct: 5 PKWGRPIDGVLLLNKDTGMTSNDALQKAKRLFFANKAGHTGSLDPLATGVLPLCFGEATK 64
Query: 362 LVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVP 421
K YS FRLG T T D D V++ HI I + FRG I Q+P
Sbjct: 65 FSQYLLDADKSYSSTFRLGIKTETGDCDGEVVETNDASHISQAMIEEVLPQFRGLIKQIP 124
Query: 422 PMFSAIK 428
M+SA+K
Sbjct: 125 SMYSALK 131
>gi|383457985|ref|YP_005371974.1| tRNA pseudouridine synthase B [Corallococcus coralloides DSM 2259]
gi|380734551|gb|AFE10553.1| tRNA pseudouridine synthase B [Corallococcus coralloides DSM 2259]
Length = 287
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 71/119 (59%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++++KP G TSF V ++R L+KVKK GH GTLDPMATG+L VC+G+ATK+
Sbjct: 4 VLVIDKPLGPTSFDVVRQVRGLLKVKKAGHTGTLDPMATGVLPVCLGEATKVAGIITEGD 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y V RLG T T DA P + + A FRG QVPPM+SA+KV
Sbjct: 64 KAYDAVVRLGIETDTQDAQGKPTSEAPVPPLTAPLLEAVLARFRGTFDQVPPMYSAVKV 122
>gi|229098279|ref|ZP_04229226.1| tRNA pseudouridine synthase B [Bacillus cereus Rock3-29]
gi|423441459|ref|ZP_17418365.1| tRNA pseudouridine synthase B [Bacillus cereus BAG4X2-1]
gi|423448315|ref|ZP_17425194.1| tRNA pseudouridine synthase B [Bacillus cereus BAG5O-1]
gi|423464533|ref|ZP_17441301.1| tRNA pseudouridine synthase B [Bacillus cereus BAG6O-1]
gi|423533875|ref|ZP_17510293.1| tRNA pseudouridine synthase B [Bacillus cereus HuB2-9]
gi|423540856|ref|ZP_17517247.1| tRNA pseudouridine synthase B [Bacillus cereus HuB4-10]
gi|228685177|gb|EEL39108.1| tRNA pseudouridine synthase B [Bacillus cereus Rock3-29]
gi|401128909|gb|EJQ36592.1| tRNA pseudouridine synthase B [Bacillus cereus BAG5O-1]
gi|401172044|gb|EJQ79265.1| tRNA pseudouridine synthase B [Bacillus cereus HuB4-10]
gi|402418120|gb|EJV50420.1| tRNA pseudouridine synthase B [Bacillus cereus BAG4X2-1]
gi|402420800|gb|EJV53071.1| tRNA pseudouridine synthase B [Bacillus cereus BAG6O-1]
gi|402464094|gb|EJV95794.1| tRNA pseudouridine synthase B [Bacillus cereus HuB2-9]
Length = 307
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 74/120 (61%), Gaps = 1/120 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + I +++ A+ G I Q PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETTNVDRSISRKEVEGVLAALTGTIEQTPPMFSAVKV 123
>gi|166030870|ref|ZP_02233699.1| hypothetical protein DORFOR_00550 [Dorea formicigenerans ATCC
27755]
gi|166029137|gb|EDR47894.1| tRNA pseudouridine synthase B [Dorea formicigenerans ATCC 27755]
Length = 304
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/116 (43%), Positives = 69/116 (59%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V K +G+TS V KLR +V KK+GH GTLDP A G+L VC+G+ATKL D K Y
Sbjct: 8 VYKEQGFTSHDVVAKLRGIVGQKKIGHTGTLDPDAVGVLPVCLGRATKLCDMLTDKDKVY 67
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
V LG T T D +++ + + +E +R A F G+ QVPPM+SA+K+
Sbjct: 68 EAVMLLGVETDTQDTTGQILKSSETDELTEEQVRAAVLDFVGDYNQVPPMYSALKI 123
>gi|386740606|ref|YP_006213786.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
31]
gi|384477300|gb|AFH91096.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
31]
Length = 303
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 69/122 (56%), Gaps = 3/122 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V G+LRR+ K+VGHAGTLDPMATG+L+V + + TK +
Sbjct: 10 LVVVDKPAGMTSHDVVGRLRRIFGTKRVGHAGTLDPMATGVLVVGIERGTKFLAHMVAST 69
Query: 371 KGYSGVFRLGEATSTWDADSPVI---QREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAI 427
K Y RLG AT+T D + V+ I D DI +F G I Q P SAI
Sbjct: 70 KSYRATIRLGLATTTDDKEGEVVFSADASTLSAITDADIAAEITNFTGNIMQRPASVSAI 129
Query: 428 KV 429
K+
Sbjct: 130 KI 131
>gi|313668521|ref|YP_004048805.1| tRNA pseudouridine synthase B [Neisseria lactamica 020-06]
gi|313005983|emb|CBN87440.1| tRNA pseudouridine synthase B [Neisseria lactamica 020-06]
Length = 306
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 73/122 (59%), Gaps = 1/122 (0%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P ++L++K +G +S T K+RRL + +K GH G LDP+ATGLL VC G+ATK
Sbjct: 9 PVNGVLLLDKSEGLSSNTALQKVRRLFRAEKAGHTGVLDPLATGLLPVCFGEATKFAQYL 68
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
K Y+ +LGEA+ST DA+ ++ + I + + A + G I QVPPMFSA
Sbjct: 69 IDADKAYTATLKLGEASSTGDAEGEIVATARAD-ISLAEFQTACQALTGNIRQVPPMFSA 127
Query: 427 IK 428
+K
Sbjct: 128 LK 129
>gi|418324134|ref|ZP_12935385.1| tRNA pseudouridine synthase B [Staphylococcus pettenkoferi VCU012]
gi|365227631|gb|EHM68823.1| tRNA pseudouridine synthase B [Staphylococcus pettenkoferi VCU012]
Length = 305
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/120 (44%), Positives = 75/120 (62%), Gaps = 4/120 (3%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
VNKP+G TS V KLR+++K+KK+GH GTLDP G+L +C+G ATK+ D M K Y
Sbjct: 8 VNKPRGLTSHDVVFKLRKILKMKKIGHTGTLDPEVDGVLPICLGSATKVSDYIMEMGKTY 67
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEH---IKDEDIRKAAASFRGEIWQVPPMFSAIKVR 430
LG +T+T D V++R E+ I DE + F+G I Q+PPM+S++KV+
Sbjct: 68 VATVTLGYSTTTEDQTGDVLERVKIENGGLIVDE-VDATLQQFKGIITQIPPMYSSVKVK 126
>gi|333901765|ref|YP_004475638.1| tRNA pseudouridine synthase B [Pseudomonas fulva 12-X]
gi|333117030|gb|AEF23544.1| tRNA pseudouridine synthase B [Pseudomonas fulva 12-X]
Length = 305
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 75/118 (63%), Gaps = 1/118 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KPKG++S K+R L+ +K GH G+LDP+ATG+L +C G+ATK
Sbjct: 14 IILLDKPKGFSSNAALQKVRWLLNAEKAGHTGSLDPLATGVLPLCFGEATKFSQYLLDAD 73
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
KGY V +LG T+T DA+ VI+R + + DI FRG+I QVPPM+SA+K
Sbjct: 74 KGYETVMQLGVTTTTADAEGEVIERREVD-VDASDIEALLPQFRGDISQVPPMYSALK 130
>gi|445377390|ref|ZP_21426671.1| tRNA pseudouridine synthase B [Streptococcus thermophilus MTCC
5460]
gi|445391529|ref|ZP_21428391.1| tRNA pseudouridine synthase B [Streptococcus thermophilus MTCC
5461]
gi|444749878|gb|ELW74746.1| tRNA pseudouridine synthase B [Streptococcus thermophilus MTCC
5461]
gi|444749972|gb|ELW74831.1| tRNA pseudouridine synthase B [Streptococcus thermophilus MTCC
5460]
Length = 293
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 73/119 (61%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR+++ KK+GH GTLDP TG+L + VGKAT++++
Sbjct: 5 IINLKKEAGMTSHDAVFKLRKILHEKKIGHGGTLDPDVTGVLPIAVGKATRVIEYMTEAG 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G +G +T+T DA V+Q P + + +A ASF GEI Q+PPM+SA+K+
Sbjct: 65 KVYEGEITIGFSTTTEDASGEVVQTTPITELDGATVDQAMASFEGEITQIPPMYSAVKI 123
>gi|387140860|ref|YP_005696838.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
1/06-A]
gi|355392651|gb|AER69316.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
1/06-A]
Length = 303
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 69/122 (56%), Gaps = 3/122 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V G+LRR+ K+VGHAGTLDPMATG+L+V + + TK +
Sbjct: 10 LVVVDKPAGMTSHDVVGRLRRIFGTKRVGHAGTLDPMATGVLVVGIERGTKFLAHMVAST 69
Query: 371 KGYSGVFRLGEATSTWDADSPVI---QREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAI 427
K Y RLG AT+T D + V+ I D DI +F G I Q P SAI
Sbjct: 70 KSYRATIRLGLATTTDDKEGEVVFSADASTLSAITDADIAAEITNFTGNIMQRPASVSAI 129
Query: 428 KV 429
K+
Sbjct: 130 KI 131
>gi|386086634|ref|YP_006002508.1| tRNA pseudouridine synthase B [Streptococcus thermophilus ND03]
gi|387909712|ref|YP_006340018.1| trNA pseudouridine synthase B [Streptococcus thermophilus
MN-ZLW-002]
gi|312278347|gb|ADQ63004.1| tRNA pseudouridine synthase B [Streptococcus thermophilus ND03]
gi|387574647|gb|AFJ83353.1| tRNA pseudouridine synthase B [Streptococcus thermophilus
MN-ZLW-002]
Length = 293
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 73/119 (61%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR+++ KK+GH GTLDP TG+L + VGKAT++++
Sbjct: 5 IINLKKEAGMTSHDAVFKLRKILHEKKIGHGGTLDPDVTGVLPIAVGKATRVIEYMTEAG 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G +G +T+T DA V+Q P + + +A ASF GEI Q+PPM+SA+K+
Sbjct: 65 KVYEGEITIGFSTTTEDASGEVVQTTPITELDGATVDQAMASFEGEITQIPPMYSAVKI 123
>gi|365862852|ref|ZP_09402583.1| tRNA pseudouridine synthase B [Streptomyces sp. W007]
gi|364007703|gb|EHM28712.1| tRNA pseudouridine synthase B [Streptomyces sp. W007]
Length = 299
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/132 (42%), Positives = 76/132 (57%), Gaps = 4/132 (3%)
Query: 298 TELPPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVG 357
TE T DG +V+V+KP G+TS V K+R + + ++VGHAGTLDPMATG+L++ V
Sbjct: 2 TEQTTTPDG----LVIVDKPSGFTSHDVVAKMRGIARTRRVGHAGTLDPMATGVLVLGVQ 57
Query: 358 KATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEI 417
+ATKL+ K Y G RLG+ T T DA+ + + E I A+ G I
Sbjct: 58 RATKLLGHLALTEKEYLGTIRLGQDTVTDDAEGEITSSTDASGVTREGIDAGVAALTGRI 117
Query: 418 WQVPPMFSAIKV 429
QVP SAIK+
Sbjct: 118 MQVPSKVSAIKI 129
>gi|379715571|ref|YP_005303908.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
316]
gi|377654277|gb|AFB72626.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
316]
Length = 302
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 69/122 (56%), Gaps = 3/122 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V G+LRR+ K+VGHAGTLDPMATG+L+V + + TK +
Sbjct: 10 LVVVDKPAGMTSHDVVGRLRRIFGTKRVGHAGTLDPMATGVLVVGIERGTKFLAHMVAST 69
Query: 371 KGYSGVFRLGEATSTWDADSPVI---QREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAI 427
K Y RLG AT+T D + V+ I D DI +F G I Q P SAI
Sbjct: 70 KSYRATIRLGLATTTDDKEGEVVFSADASTLSAITDADIAAEITNFTGNIMQRPASVSAI 129
Query: 428 KV 429
K+
Sbjct: 130 KI 131
>gi|408528922|emb|CCK27096.1| tRNA pseudouridine synthase B [Streptomyces davawensis JCM 4913]
Length = 301
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 71/119 (59%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G+TS V K+R + + ++VGHAGTLDPMATG+L++ V KATKL+
Sbjct: 11 LVIVDKPSGFTSHDVVAKMRGIARTRRVGHAGTLDPMATGVLVLGVEKATKLLGHLALTE 70
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G RLG+ T T DA+ + + E + A G+I QVP SAIK+
Sbjct: 71 KEYLGTIRLGQTTLTDDAEGEITGSSDASKVTREAVDAGIAKLSGDIMQVPSKVSAIKI 129
>gi|422843943|ref|ZP_16890653.1| tRNA pseudouridine synthase B [Lactobacillus delbrueckii subsp.
lactis DSM 20072]
gi|325685941|gb|EGD28004.1| tRNA pseudouridine synthase B [Lactobacillus delbrueckii subsp.
lactis DSM 20072]
Length = 298
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 83/132 (62%), Gaps = 4/132 (3%)
Query: 308 FGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQ 367
F +++++K G TS V KLRRL+K KK+GHAGTLDP TG+L + +G+ATKL++
Sbjct: 2 FNGIIVIDKAAGMTSGDVVYKLRRLLKQKKIGHAGTLDPEVTGVLPIALGQATKLIELMH 61
Query: 368 GMIKGYSGVFRLGEATSTWDADSPVI-QREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
K Y G LG AT ++D + ++ +R + + D+ I+ A GEI Q PP++SA
Sbjct: 62 ERPKAYVGEGMLGLATDSYDLEGKILAERALSQPVSDQAIKAAMEKLTGEIVQQPPIYSA 121
Query: 427 IKV---RVFHFS 435
++V R++ ++
Sbjct: 122 VRVNGKRLYEYA 133
>gi|239991156|ref|ZP_04711820.1| tRNA pseudouridine synthase B [Streptomyces roseosporus NRRL 11379]
gi|291448153|ref|ZP_06587543.1| tRNA pseudouridine synthase B [Streptomyces roseosporus NRRL 15998]
gi|291351100|gb|EFE78004.1| tRNA pseudouridine synthase B [Streptomyces roseosporus NRRL 15998]
Length = 299
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/132 (42%), Positives = 76/132 (57%), Gaps = 4/132 (3%)
Query: 298 TELPPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVG 357
TE T DG +V+V+KP G+TS V K+R + + ++VGHAGTLDPMATG+L++ V
Sbjct: 2 TEQTTTPDG----LVIVDKPSGFTSHDVVAKMRGIARTRRVGHAGTLDPMATGVLVLGVQ 57
Query: 358 KATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEI 417
+ATKL+ K Y G RLG+ T T DA+ + + E I A+ G I
Sbjct: 58 RATKLLGHLALTEKEYLGTIRLGQDTITDDAEGEITSSTDASKVTREGIDAGVAALTGAI 117
Query: 418 WQVPPMFSAIKV 429
QVP SAIK+
Sbjct: 118 MQVPSKVSAIKI 129
>gi|225075531|ref|ZP_03718730.1| hypothetical protein NEIFLAOT_00544 [Neisseria flavescens
NRL30031/H210]
gi|224953166|gb|EEG34375.1| hypothetical protein NEIFLAOT_00544 [Neisseria flavescens
NRL30031/H210]
Length = 304
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 72/122 (59%), Gaps = 1/122 (0%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P ++L++KP+G +S T K RRL + +K GH G LDP+ATGLL VC G+ATK
Sbjct: 9 PVNGVLLLDKPEGLSSNTALQKARRLFRAEKAGHTGVLDPLATGLLPVCFGEATKFAQYL 68
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
K Y+ +LGEA+ST DA+ ++ + I + + A + I QVPPMFSA
Sbjct: 69 IDADKAYTATLKLGEASSTGDAEGEIVATARAD-ISLSEFQTACQALTDNIRQVPPMFSA 127
Query: 427 IK 428
+K
Sbjct: 128 LK 129
>gi|404400417|ref|ZP_10992001.1| tRNA pseudouridine synthase B [Pseudomonas fuscovaginae UPB0736]
Length = 305
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 74/118 (62%), Gaps = 1/118 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP G+TS K+R L+ +K GH G+LDP+ATG+L +C G+ATK
Sbjct: 14 IILLDKPLGFTSNAALQKVRWLLNAEKAGHTGSLDPLATGVLPLCFGEATKFSQYLLDSD 73
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
KGY + +LG+ T+T DA+ V+Q P + DI FRGEI Q+PPM+SA+K
Sbjct: 74 KGYETLMQLGKTTTTADAEGEVLQTRPVT-VGRADIEAVLPDFRGEISQIPPMYSALK 130
>gi|350272432|ref|YP_004883740.1| tRNA pseudouridine synthase [Oscillibacter valericigenes Sjm18-20]
gi|348597274|dbj|BAL01235.1| tRNA pseudouridine synthase [Oscillibacter valericigenes Sjm18-20]
Length = 288
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 74/119 (62%), Gaps = 1/119 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+++++KP WTS VC KLR +++ K+VGH+GTLDPMATG+L V VG+AT+ V+ +
Sbjct: 5 IIIIDKPADWTSMDVCAKLRGILREKRVGHSGTLDPMATGVLPVFVGQATRAVEFAESGK 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y RLG T T D I+ E + E + F G+I Q+PPM+SAIK+
Sbjct: 65 KEYVAGLRLGLVTDTQDVTGTTIETREAE-VSREMLAAVLPQFTGDIQQLPPMYSAIKI 122
>gi|422858696|ref|ZP_16905346.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK1057]
gi|327459839|gb|EGF06179.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK1057]
Length = 292
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/120 (44%), Positives = 75/120 (62%), Gaps = 1/120 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR+++K KK+GH GTLDP G+L + VGKAT+LV+ Q
Sbjct: 4 IINLRKEAGMTSHDAVFKLRKILKTKKIGHGGTLDPDVVGVLPIAVGKATRLVEFMQEEG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDED-IRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA +++R P + +E I +A S GEI Q+PPM+SA+KV
Sbjct: 64 KVYEGEITLGCSTTTEDASGDILERTPVTELLEEALIDEAMESMTGEIRQIPPMYSAVKV 123
>gi|387138870|ref|YP_005694849.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
CIP 52.97]
gi|389850622|ref|YP_006352857.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
258]
gi|349735348|gb|AEQ06826.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
CIP 52.97]
gi|388247928|gb|AFK16919.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
258]
Length = 303
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 69/122 (56%), Gaps = 3/122 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V G+LRR+ K+VGHAGTLDPMATG+L+V + + TK +
Sbjct: 10 LVVVDKPAGMTSHDVVGRLRRIFGTKRVGHAGTLDPMATGVLVVGIERGTKFLAHMVAST 69
Query: 371 KGYSGVFRLGEATSTWDADSPVI---QREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAI 427
K Y RLG AT+T D + V+ I D DI +F G I Q P SAI
Sbjct: 70 KSYRATIRLGLATTTDDKEGEVVFSADASTLSAITDADIAAEITNFTGNIMQRPASVSAI 129
Query: 428 KV 429
K+
Sbjct: 130 KI 131
>gi|403736777|ref|ZP_10949738.1| tRNA pseudouridine synthase B [Austwickia chelonae NBRC 105200]
gi|403192872|dbj|GAB76508.1| tRNA pseudouridine synthase B [Austwickia chelonae NBRC 105200]
Length = 323
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 78/130 (60%), Gaps = 5/130 (3%)
Query: 301 PPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKAT 360
P DG ++LV+KP G TS V G+ RR+ ++VGHAGTLDPMATGLL++ V KAT
Sbjct: 7 PLVGDG----LLLVDKPSGMTSHDVVGRCRRICGTRRVGHAGTLDPMATGLLLIGVNKAT 62
Query: 361 KLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQR-EPWEHIKDEDIRKAAASFRGEIWQ 419
+L+ G K Y RLG++T T DA+ + + +++++I A A G I Q
Sbjct: 63 RLLTFLVGCDKTYLATIRLGQSTVTDDAEGELTGAVDVLPALEEKEIDAAIARLTGSIEQ 122
Query: 420 VPPMFSAIKV 429
VP SAIKV
Sbjct: 123 VPSAVSAIKV 132
>gi|55822947|ref|YP_141388.1| tRNA pseudouridine synthase B [Streptococcus thermophilus CNRZ1066]
gi|62901186|sp|Q5LZV2.1|TRUB_STRT1 RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|55738932|gb|AAV62573.1| tRNA pseudouridine synthase B [Streptococcus thermophilus CNRZ1066]
Length = 293
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 73/119 (61%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR+++ KK+GH GTLDP TG+L + VGKAT++++
Sbjct: 5 IINLKKEAGMTSHDAVFKLRKILHEKKIGHGGTLDPDVTGVLPIAVGKATRVIEYMTEAG 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G +G +T+T DA V+Q P + + +A ASF GEI Q+PPM+SA+K+
Sbjct: 65 KVYEGEITIGFSTTTEDASGEVVQTTPITELDGATVDQAMASFEGEITQIPPMYSAVKI 123
>gi|55821028|ref|YP_139470.1| tRNA pseudouridine synthase B [Streptococcus thermophilus LMG
18311]
gi|418027139|ref|ZP_12665828.1| tRNA pseudouridine(38-40) synthase [Streptococcus thermophilus CNCM
I-1630]
gi|62901190|sp|Q5M4G2.1|TRUB_STRT2 RecName: Full=tRNA pseudouridine synthase B; AltName: Full=tRNA
pseudouridine(55) synthase; Short=Psi55 synthase;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|55737013|gb|AAV60655.1| tRNA pseudouridine synthase B [Streptococcus thermophilus LMG
18311]
gi|354692709|gb|EHE92518.1| tRNA pseudouridine(38-40) synthase [Streptococcus thermophilus CNCM
I-1630]
Length = 293
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 73/119 (61%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR+++ KK+GH GTLDP TG+L + VGKAT++++
Sbjct: 5 IINLKKEAGMTSHDAVFKLRKILHEKKIGHGGTLDPDVTGVLPIAVGKATRVIEYMTEAG 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G +G +T+T DA V+Q P + + +A ASF GEI Q+PPM+SA+K+
Sbjct: 65 KVYEGEITIGFSTTTEDASGEVVQTTPITELDGATVDQAMASFEGEITQIPPMYSAVKI 123
>gi|300858692|ref|YP_003783675.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
FRC41]
gi|375288875|ref|YP_005123416.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
3/99-5]
gi|383314454|ref|YP_005375309.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
P54B96]
gi|384504872|ref|YP_005681542.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
1002]
gi|384506968|ref|YP_005683637.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
C231]
gi|384509055|ref|YP_005685723.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
I19]
gi|385807754|ref|YP_005844151.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
267]
gi|387136796|ref|YP_005692776.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
42/02-A]
gi|300686146|gb|ADK29068.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
FRC41]
gi|302206402|gb|ADL10744.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
C231]
gi|302330958|gb|ADL21152.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
1002]
gi|308276645|gb|ADO26544.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
I19]
gi|348607241|gb|AEP70514.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
42/02-A]
gi|371576164|gb|AEX39767.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
3/99-5]
gi|380869955|gb|AFF22429.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
P54B96]
gi|383805147|gb|AFH52226.1| tRNA pseudouridine synthase B [Corynebacterium pseudotuberculosis
267]
Length = 303
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 69/122 (56%), Gaps = 3/122 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V G+LRR+ K+VGHAGTLDPMATG+L+V + + TK +
Sbjct: 10 LVVVDKPAGMTSHDVVGRLRRIFGTKRVGHAGTLDPMATGVLVVGIERGTKFLAHMVAST 69
Query: 371 KGYSGVFRLGEATSTWDADSPVI---QREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAI 427
K Y RLG AT+T D + V+ I D DI +F G I Q P SAI
Sbjct: 70 KSYRATIRLGLATTTDDKEGEVVFSADASTLSAITDADIAAEITNFTGNIMQRPASVSAI 129
Query: 428 KV 429
K+
Sbjct: 130 KI 131
>gi|294675835|ref|YP_003576450.1| tRNA pseudouridine synthase B [Rhodobacter capsulatus SB 1003]
gi|294474655|gb|ADE84043.1| tRNA pseudouridine synthase B [Rhodobacter capsulatus SB 1003]
Length = 303
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/118 (48%), Positives = 73/118 (61%), Gaps = 1/118 (0%)
Query: 312 VLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIK 371
V+V+KP G TS V GK+R KK GHAGTLDP ATG+L V +G+ATK V +K
Sbjct: 13 VVVDKPAGVTSTAVVGKVRWAFDAKKAGHAGTLDPAATGVLAVALGEATKTVPFITDALK 72
Query: 372 GYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
Y R G AT+T DA+ ++ R D +I A A+FRG+I QVPP +SA+KV
Sbjct: 73 CYRFQVRFGAATATDDAEGAIVARSD-SRPSDAEILAALAAFRGDIMQVPPQYSAVKV 129
>gi|289768758|ref|ZP_06528136.1| tRNA pseudouridine synthase B [Streptomyces lividans TK24]
gi|289698957|gb|EFD66386.1| tRNA pseudouridine synthase B [Streptomyces lividans TK24]
Length = 301
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/133 (42%), Positives = 77/133 (57%), Gaps = 4/133 (3%)
Query: 298 TELPPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVG 357
TE T DG +V+V+KP G+TS V K+R + + ++VGHAGTLDPMATG+L++ V
Sbjct: 2 TEKHTTPDG----LVIVDKPSGFTSHDVVAKMRGIARTRRVGHAGTLDPMATGVLVLGVE 57
Query: 358 KATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEI 417
+ATKL+ K Y G RLG+ T T DA+ + + E I A G+I
Sbjct: 58 RATKLLGHLALTEKEYLGTIRLGQTTLTDDAEGEITGSRDASKVTREAIDAGVAELSGDI 117
Query: 418 WQVPPMFSAIKVR 430
QVP SAIK++
Sbjct: 118 MQVPSKVSAIKIK 130
>gi|229104372|ref|ZP_04235041.1| tRNA pseudouridine synthase B [Bacillus cereus Rock3-28]
gi|407706270|ref|YP_006829855.1| 2-dehydropantoate 2-reductase [Bacillus thuringiensis MC28]
gi|423615929|ref|ZP_17591763.1| tRNA pseudouridine synthase B [Bacillus cereus VD115]
gi|228679070|gb|EEL33278.1| tRNA pseudouridine synthase B [Bacillus cereus Rock3-28]
gi|401260466|gb|EJR66639.1| tRNA pseudouridine synthase B [Bacillus cereus VD115]
gi|407383955|gb|AFU14456.1| tRNA pseudouridine synthase B [Bacillus thuringiensis MC28]
Length = 307
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 74/120 (61%), Gaps = 1/120 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+VL++KPKG TS KLR++++ K++GH GTLDP TG+L +CVG+ATK+
Sbjct: 4 VVLLHKPKGMTSHDCVFKLRKILREKRIGHTGTLDPDVTGVLPICVGRATKIAQFLTSET 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA V++ + I +++ A+ G I Q PPMFSA+KV
Sbjct: 64 KTYEGEVTLGFSTTTEDASGEVVETTNVDRSITRKEVEGVLAALTGTIEQTPPMFSAVKV 123
>gi|256396840|ref|YP_003118404.1| tRNA pseudouridine synthase B [Catenulispora acidiphila DSM 44928]
gi|256363066|gb|ACU76563.1| tRNA pseudouridine synthase B [Catenulispora acidiphila DSM 44928]
Length = 305
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 79/125 (63%), Gaps = 1/125 (0%)
Query: 305 DGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVD 364
DGP G +V+V+KP GWTS V G++RRL + ++VGHAGTLDPMATG+L+V V K T+L+
Sbjct: 9 DGP-GGLVIVDKPAGWTSHDVVGRVRRLARTRRVGHAGTLDPMATGVLVVGVEKTTRLLG 67
Query: 365 RYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMF 424
K Y RLG++T T DA+ R ++ D+ +R A SF G I Q P
Sbjct: 68 HLALTRKTYETTIRLGQSTITDDAEGETTDRADASNVSDDMVRGAIPSFVGAITQRPSAV 127
Query: 425 SAIKV 429
SAIKV
Sbjct: 128 SAIKV 132
>gi|167758071|ref|ZP_02430198.1| hypothetical protein CLOSCI_00409 [Clostridium scindens ATCC 35704]
gi|336421569|ref|ZP_08601726.1| hypothetical protein HMPREF0993_01103 [Lachnospiraceae bacterium
5_1_57FAA]
gi|167663968|gb|EDS08098.1| tRNA pseudouridine synthase B [Clostridium scindens ATCC 35704]
gi|336000453|gb|EGN30603.1| hypothetical protein HMPREF0993_01103 [Lachnospiraceae bacterium
5_1_57FAA]
Length = 303
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/116 (48%), Positives = 71/116 (61%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V K KG+TS V KLR + KK+GH GTLDP ATG+L VC+GKATKL D K Y
Sbjct: 8 VYKGKGYTSHDVVAKLRGITGQKKIGHTGTLDPDATGVLPVCLGKATKLCDMLTDKDKTY 67
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
V LG +T T DA V+ + ++++R+A SF G QVPPM+SA+KV
Sbjct: 68 EAVLLLGVSTDTQDAGGEVLGTSDTAGLGEKEVREAIQSFVGGYDQVPPMYSALKV 123
>gi|261879605|ref|ZP_06006032.1| tRNA pseudouridine synthase B [Prevotella bergensis DSM 17361]
gi|270333754|gb|EFA44540.1| tRNA pseudouridine synthase B [Prevotella bergensis DSM 17361]
Length = 232
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 74/126 (58%), Gaps = 5/126 (3%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK-----KVGHAGTLDPMATGLLIVCVGKATKLV 363
G + ++KP +SF +R L+ K K+GHAGTLDP+ATG+L++C GK TK +
Sbjct: 6 GEIFAIDKPYRMSSFGALAHVRYLLSRKLGRKVKIGHAGTLDPLATGVLVLCTGKCTKQI 65
Query: 364 DRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPM 423
+ Q K Y+ +LG T ++D + V P HI ++ +R+ F G+I QVPP
Sbjct: 66 ETLQAHTKEYTATLQLGATTDSYDREHTVNHTYPCRHITEDMVREVLKQFEGDIDQVPPT 125
Query: 424 FSAIKV 429
+SA+KV
Sbjct: 126 YSAVKV 131
>gi|386344683|ref|YP_006040847.1| tRNA pseudouridine synthase B [Streptococcus thermophilus JIM 8232]
gi|339278144|emb|CCC19892.1| tRNA pseudouridine synthase B (tRNA pseudouridine 55 synthase)
(Psi55 synthase) (tRNA-uridine isomerase) (tRNA
pseudouridylate synthase) [Streptococcus thermophilus
JIM 8232]
Length = 293
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 73/119 (61%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR+++ KK+GH GTLDP TG+L + VGKAT++++
Sbjct: 5 IINLKKEAGMTSHDAVFKLRKILHEKKIGHGGTLDPDVTGVLPITVGKATRVIEYMTEAG 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G +G +T+T DA V+Q P + + +A ASF GEI Q+PPM+SA+K+
Sbjct: 65 KVYEGEITIGFSTTTEDASGEVVQTTPITELDGATVDQAMASFEGEITQIPPMYSAVKI 123
>gi|408681081|ref|YP_006880908.1| tRNA pseudouridine synthase B [Streptomyces venezuelae ATCC 10712]
gi|328885410|emb|CCA58649.1| tRNA pseudouridine synthase B [Streptomyces venezuelae ATCC 10712]
Length = 299
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 70/119 (58%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G+TS V K+R + K ++VGHAGTLDPMATG+L++ V +ATKL+
Sbjct: 11 LVIVDKPSGFTSHDVVAKMRGIAKTRRVGHAGTLDPMATGVLVLGVERATKLLGHLALTE 70
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G RLG+ T T DA+ + + E I A G I QVP SAIK+
Sbjct: 71 KEYLGTIRLGQTTITDDAEGEITASVDASKVTREGIDAGVAELTGAIMQVPSKVSAIKI 129
>gi|303326250|ref|ZP_07356693.1| tRNA pseudouridine synthase B [Desulfovibrio sp. 3_1_syn3]
gi|345891923|ref|ZP_08842751.1| hypothetical protein HMPREF1022_01411 [Desulfovibrio sp.
6_1_46AFAA]
gi|302864166|gb|EFL87097.1| tRNA pseudouridine synthase B [Desulfovibrio sp. 3_1_syn3]
gi|345047783|gb|EGW51642.1| hypothetical protein HMPREF1022_01411 [Desulfovibrio sp.
6_1_46AFAA]
Length = 317
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 80/135 (59%), Gaps = 15/135 (11%)
Query: 301 PPTWDGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKAT 360
PP G +VL NKP G TS L+RL + KK+GHAGTLDP+A+G+L+V +G+AT
Sbjct: 14 PPQLPQLHGVLVL-NKPSGPTSARCLTALKRLGQ-KKIGHAGTLDPLASGVLLVLLGQAT 71
Query: 361 KLVDRYQ-GMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQ 419
KL G K YSGV RLG T TWD+ V+ PWEH+ + D+R+ + +WQ
Sbjct: 72 KLSSHLMAGGGKVYSGVLRLGRTTDTWDSQGQVLTEAPWEHVSEGDVRREIS-----LWQ 126
Query: 420 ------VPPMFSAIK 428
VPP +SA K
Sbjct: 127 EAREQPVPP-YSAAK 140
>gi|386774364|ref|ZP_10096742.1| tRNA pseudouridine synthase B [Brachybacterium paraconglomeratum
LC44]
Length = 315
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 78/124 (62%), Gaps = 2/124 (1%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P G ++LV+K + TS V ++R L+ KKVGHAGTLDPMATGLL++ VG+ T+L+
Sbjct: 5 PHG-ILLVDKAEDRTSHDVVARVRWLLGTKKVGHAGTLDPMATGLLVLGVGQGTRLLTHL 63
Query: 367 QGMIKGYSGVFRLGEATSTWDADS-PVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFS 425
G+ K Y RLG AT+T D + PV +R I+D + +A RG+I QVP S
Sbjct: 64 VGLDKTYLATIRLGSATTTDDREGEPVGERVDATGIEDARLEEALDGLRGDIQQVPSTVS 123
Query: 426 AIKV 429
AIKV
Sbjct: 124 AIKV 127
>gi|259417845|ref|ZP_05741764.1| tRNA pseudouridine synthase B [Silicibacter sp. TrichCH4B]
gi|259346751|gb|EEW58565.1| tRNA pseudouridine synthase B [Silicibacter sp. TrichCH4B]
Length = 302
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/118 (49%), Positives = 73/118 (61%), Gaps = 1/118 (0%)
Query: 312 VLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIK 371
++V+KP G TS V K+R KK GHAGTLDP ATG+L V +G+ATK V +K
Sbjct: 14 LVVDKPAGLTSTAVVNKVRWAFDAKKAGHAGTLDPEATGVLAVALGEATKTVPFITDAMK 73
Query: 372 GYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
Y+ LG AT+T DA+ VI E DE+I++A F GEI QVPP FSA+KV
Sbjct: 74 AYTFTVTLGAATNTDDAEGEVIATSA-ERPSDEEIKEALLGFIGEIQQVPPKFSAVKV 130
>gi|114769584|ref|ZP_01447194.1| tRNA pseudouridine synthase B [Rhodobacterales bacterium HTCC2255]
gi|114549289|gb|EAU52171.1| tRNA pseudouridine synthase B [alpha proteobacterium HTCC2255]
gi|297183950|gb|ADI20071.1| hypothetical protein [uncultured alpha proteobacterium
EB080_L11F12]
Length = 302
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 75/118 (63%), Gaps = 1/118 (0%)
Query: 312 VLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIK 371
+L++KP G TS V K++ + KK GHAGTLDP ATGLL + +G+ATK V IK
Sbjct: 14 LLIDKPAGITSSAVVNKVKWALNAKKAGHAGTLDPEATGLLAIALGEATKTVPYVTSGIK 73
Query: 372 GYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
Y+ + +LGEAT+T D++ VI + D +I+ + SF G I Q+PP FSA+KV
Sbjct: 74 AYTFIIKLGEATNTDDSEGKVIAKSA-NRPTDREIQASLKSFIGNIKQIPPQFSAVKV 130
>gi|428306981|ref|YP_007143806.1| tRNA pseudouridine synthase B [Crinalium epipsammum PCC 9333]
gi|428248516|gb|AFZ14296.1| tRNA pseudouridine synthase B [Crinalium epipsammum PCC 9333]
Length = 318
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 74/117 (63%), Gaps = 1/117 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+NKP G+TS ++R+L+++K+VGH GTLDP TG+L + +GKAT+L+ +Y K Y
Sbjct: 7 LNKPAGFTSHDCVARVRKLLRLKRVGHGGTLDPAVTGVLPIALGKATRLL-QYLRQDKAY 65
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVR 430
G +LG T+T D +I ++P + E + A F G I Q+PP +SAI+V+
Sbjct: 66 QGTIKLGVTTTTDDLAGEIISQQPVNDLSLEAVTAALQQFEGTIQQIPPNYSAIQVQ 122
>gi|422848896|ref|ZP_16895572.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK115]
gi|325689917|gb|EGD31921.1| tRNA pseudouridine synthase B [Streptococcus sanguinis SK115]
Length = 292
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/120 (44%), Positives = 75/120 (62%), Gaps = 1/120 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ + K G TS KLR+++K KK+GH GTLDP G+L + VGKAT+LV+ Q
Sbjct: 4 IINLRKEAGMTSHDAVFKLRKILKTKKIGHGGTLDPDVVGVLPIAVGKATRLVEFMQEEG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDED-IRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T DA +++R P + +E I +A S GEI Q+PPM+SA+KV
Sbjct: 64 KVYEGEITLGCSTTTEDASGDILERTPVTELLEEALIDEAMESMTGEIRQIPPMYSAVKV 123
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.315 0.133 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,295,585,471
Number of Sequences: 23463169
Number of extensions: 330234749
Number of successful extensions: 876011
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 4775
Number of HSP's successfully gapped in prelim test: 1079
Number of HSP's that attempted gapping in prelim test: 856285
Number of HSP's gapped (non-prelim): 12889
length of query: 435
length of database: 8,064,228,071
effective HSP length: 145
effective length of query: 290
effective length of database: 8,957,035,862
effective search space: 2597540399980
effective search space used: 2597540399980
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 78 (34.7 bits)