BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013857
(435 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A0JUU8|TRUB_ARTS2 tRNA pseudouridine synthase B OS=Arthrobacter sp. (strain FB24)
GN=truB PE=3 SV=1
Length = 306
Score = 124 bits (312), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/119 (49%), Positives = 79/119 (66%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP+GWTS V G++RRL +KVGHAGTLDPMATG+L++ + KAT+L+ G
Sbjct: 5 LVIVDKPQGWTSHDVVGRMRRLAGTRKVGHAGTLDPMATGVLVLGINKATRLLTYIVGTS 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ RLGE+T T DA+ V+ + + IR A A+ GEI QVP SAIKV
Sbjct: 65 KTYTATIRLGESTVTDDAEGEVVSSHSAAAVTEGAIRAAVAALTGEIQQVPSSVSAIKV 123
>sp|Q47RU8|TRUB_THEFY tRNA pseudouridine synthase B OS=Thermobifida fusca (strain YX)
GN=truB PE=3 SV=1
Length = 293
Score = 122 bits (306), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 57/120 (47%), Positives = 80/120 (66%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP GWTS V ++RRL ++VGHAGTLDPMATG+L+V VGKAT+L+
Sbjct: 5 VVIVDKPAGWTSHDVVARVRRLAGTRRVGHAGTLDPMATGVLVVGVGKATRLLGYLALTE 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVR 430
K Y RLG++T+T DA+ +++R P +HI + + + G I QVPP SA+KVR
Sbjct: 65 KVYEATIRLGQSTTTDDAEGELLERRPADHIDEAAVHAGTRALTGVIHQVPPQVSAVKVR 124
>sp|A1R520|TRUB_ARTAT tRNA pseudouridine synthase B OS=Arthrobacter aurescens (strain
TC1) GN=truB PE=3 SV=1
Length = 311
Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/119 (48%), Positives = 77/119 (64%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP+GWTS V G++RRL +KVGHAGTLDPMATG+L++ + KAT+L+ G
Sbjct: 5 LVIVDKPQGWTSHDVVGRMRRLAGTRKVGHAGTLDPMATGVLVLGINKATRLLTYIVGTS 64
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ RLGE T T DA+ V + HI D+ + A+ G I QVP SAIKV
Sbjct: 65 KTYTATIRLGETTITDDAEGEVTEARTAAHITDDAVAVGVAALTGPIQQVPSSVSAIKV 123
>sp|Q650L8|TRUB_BACFR tRNA pseudouridine synthase B OS=Bacteroides fragilis (strain
YCH46) GN=truB PE=3 SV=1
Length = 233
Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/127 (48%), Positives = 79/127 (62%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ NKP GWTSF V G R R +KVKK VGHAGTLDP+ATG++IVC GKATK
Sbjct: 6 GEVLYFNKPLGWTSFKVVGHARYHMCRRMKVKKLKVGHAGTLDPLATGVMIVCTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y +LG T ++D + + P EHI E + K +F GEI Q+PP
Sbjct: 66 IEEFQYHTKEYVATIQLGATTPSYDLEHEIDATYPTEHITRELVEKTLKTFVGEIQQIPP 125
Query: 423 MFSAIKV 429
FSA KV
Sbjct: 126 AFSACKV 132
>sp|Q5LJ29|TRUB_BACFN tRNA pseudouridine synthase B OS=Bacteroides fragilis (strain ATCC
25285 / NCTC 9343) GN=truB PE=3 SV=1
Length = 233
Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/127 (48%), Positives = 79/127 (62%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ NKP GWTSF V G R R +KVKK VGHAGTLDP+ATG++IVC GKATK
Sbjct: 6 GEVLYFNKPLGWTSFKVVGHARYHMCRRMKVKKLKVGHAGTLDPLATGVMIVCTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y +LG T ++D + + P EHI E + K +F GEI Q+PP
Sbjct: 66 IEEFQYHTKEYVATIQLGATTPSYDLEHEIDATYPTEHITRELVEKTLKTFVGEIQQIPP 125
Query: 423 MFSAIKV 429
FSA KV
Sbjct: 126 AFSACKV 132
>sp|Q1BA81|TRUB_MYCSS tRNA pseudouridine synthase B OS=Mycobacterium sp. (strain MCS)
GN=truB PE=3 SV=1
Length = 297
Score = 117 bits (292), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/115 (50%), Positives = 73/115 (63%)
Query: 315 NKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYS 374
+KP G TS V G+ RR+ +KVGHAGTLDPMATG+L+V + +ATKL+ K Y
Sbjct: 14 DKPAGMTSHDVVGRCRRIFGTRKVGHAGTLDPMATGVLVVGIDRATKLLGLLTATDKSYE 73
Query: 375 GVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
RLG+ T+T DA+ V++ P I DE I A A+ RGEI QVP SAIKV
Sbjct: 74 ATIRLGQTTTTEDAEGDVVETTPATGITDEQIGHAVAALRGEIDQVPSAVSAIKV 128
>sp|A1UET1|TRUB_MYCSK tRNA pseudouridine synthase B OS=Mycobacterium sp. (strain KMS)
GN=truB PE=3 SV=1
Length = 297
Score = 117 bits (292), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/115 (50%), Positives = 73/115 (63%)
Query: 315 NKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYS 374
+KP G TS V G+ RR+ +KVGHAGTLDPMATG+L+V + +ATKL+ K Y
Sbjct: 14 DKPAGMTSHDVVGRCRRIFGTRKVGHAGTLDPMATGVLVVGIDRATKLLGLLTATDKSYE 73
Query: 375 GVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
RLG+ T+T DA+ V++ P I DE I A A+ RGEI QVP SAIKV
Sbjct: 74 ATIRLGQTTTTEDAEGDVVETTPATGITDEQIGHAVAALRGEIDQVPSAVSAIKV 128
>sp|A3PY88|TRUB_MYCSJ tRNA pseudouridine synthase B OS=Mycobacterium sp. (strain JLS)
GN=truB PE=3 SV=1
Length = 297
Score = 117 bits (292), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/115 (50%), Positives = 73/115 (63%)
Query: 315 NKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYS 374
+KP G TS V G+ RR+ +KVGHAGTLDPMATG+L+V + +ATKL+ K Y
Sbjct: 14 DKPAGMTSHDVVGRCRRIFGTRKVGHAGTLDPMATGVLVVGIDRATKLLGLLTATDKSYE 73
Query: 375 GVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
RLG+ T+T DA+ V++ P I DE I A A+ RGEI QVP SAIKV
Sbjct: 74 ATIRLGQTTTTEDAEGDVVETTPATGITDEQIGHAVAALRGEIDQVPSAVSAIKV 128
>sp|P62190|TRUB_MYCTU tRNA pseudouridine synthase B OS=Mycobacterium tuberculosis GN=truB
PE=1 SV=1
Length = 298
Score = 117 bits (292), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 77/119 (64%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+++KP G TS V G+ RR+ ++VGHAGTLDPMATG+L++ + +ATK++
Sbjct: 8 IVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTAAP 67
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ RLG+ TST DA+ V+Q P +H+ E I A RGEI QVP SAIKV
Sbjct: 68 KSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAIKV 126
>sp|A5U6E6|TRUB_MYCTA tRNA pseudouridine synthase B OS=Mycobacterium tuberculosis (strain
ATCC 25177 / H37Ra) GN=truB PE=3 SV=1
Length = 298
Score = 117 bits (292), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 77/119 (64%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+++KP G TS V G+ RR+ ++VGHAGTLDPMATG+L++ + +ATK++
Sbjct: 8 IVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTAAP 67
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ RLG+ TST DA+ V+Q P +H+ E I A RGEI QVP SAIKV
Sbjct: 68 KSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAIKV 126
>sp|A1KMD6|TRUB_MYCBP tRNA pseudouridine synthase B OS=Mycobacterium bovis (strain BCG /
Pasteur 1173P2) GN=truB PE=3 SV=1
Length = 298
Score = 117 bits (292), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 77/119 (64%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+++KP G TS V G+ RR+ ++VGHAGTLDPMATG+L++ + +ATK++
Sbjct: 8 IVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTAAP 67
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ RLG+ TST DA+ V+Q P +H+ E I A RGEI QVP SAIKV
Sbjct: 68 KSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAIKV 126
>sp|P62189|TRUB_MYCBO tRNA pseudouridine synthase B OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=truB PE=3 SV=1
Length = 298
Score = 117 bits (292), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 77/119 (64%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+++KP G TS V G+ RR+ ++VGHAGTLDPMATG+L++ + +ATK++
Sbjct: 8 IVVIDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVIGIERATKILGLLTAAP 67
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ RLG+ TST DA+ V+Q P +H+ E I A RGEI QVP SAIKV
Sbjct: 68 KSYAATIRLGQTTSTEDAEGQVLQSVPAKHLTIEAIDAAMERLRGEIRQVPSSVSAIKV 126
>sp|A0QIX1|TRUB_MYCA1 tRNA pseudouridine synthase B OS=Mycobacterium avium (strain 104)
GN=truB PE=3 SV=1
Length = 309
Score = 116 bits (291), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 76/119 (63%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V G+ RR+ ++VGHAGTLDPMATG+L++ V +ATK++
Sbjct: 6 LVVVDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVLGVERATKILGLLTAAA 65
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K YS RLG+ATST DA+ V++ H+ + I A RG+I QVP SAIKV
Sbjct: 66 KSYSATIRLGQATSTDDAEGDVVRSVDARHLTSQAIEAAVGGLRGDIHQVPSTVSAIKV 124
>sp|Q9RB36|TRUB_FLAJ1 tRNA pseudouridine synthase B OS=Flavobacterium johnsoniae (strain
ATCC 17061 / DSM 2064 / UW101) GN=truB PE=3 SV=1
Length = 229
Score = 115 bits (289), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 59/134 (44%), Positives = 83/134 (61%), Gaps = 10/134 (7%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLRRLVKVK-------KVGHAGTLDPMATGLLIVCVGKATK 361
G ++L++KP W+SF KL+ L+ K K+GHAGTLDP+ATGLL++C GK TK
Sbjct: 9 GQVLLIDKPLKWSSFQAVNKLKYLLINKVGLPKKFKIGHAGTLDPLATGLLLICTGKFTK 68
Query: 362 LVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVP 421
+ QG K Y+G F +G T ++D ++ + Q P EHI + I + F GEI Q P
Sbjct: 69 KISELQGQAKEYTGTFYIGATTPSYDLETEIDQTFPTEHINEVLIHETVKQFLGEIDQKP 128
Query: 422 PMFSAIK---VRVF 432
P+FSAIK VR++
Sbjct: 129 PIFSAIKKDGVRLY 142
>sp|B1MD72|TRUB_MYCA9 tRNA pseudouridine synthase B OS=Mycobacterium abscessus (strain
ATCC 19977 / DSM 44196) GN=truB PE=3 SV=1
Length = 298
Score = 115 bits (289), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 76/119 (63%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V + RR+ +KVGHAGTLDPMATG+L++ + +ATK++
Sbjct: 10 LVIVDKPAGMTSHDVVSRCRRIFSTRKVGHAGTLDPMATGVLVIGIERATKIMGLLTLTT 69
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y+ R G++TST DA+ V+Q H+ + DI A A RG+I QVP SAIKV
Sbjct: 70 KSYAATIRFGQSTSTDDAEGEVLQTISASHLTEVDIEAAVAGLRGDIAQVPSSVSAIKV 128
>sp|Q73VW3|TRUB_MYCPA tRNA pseudouridine synthase B OS=Mycobacterium paratuberculosis
(strain ATCC BAA-968 / K-10) GN=truB PE=3 SV=1
Length = 293
Score = 114 bits (286), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 75/119 (63%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V G+ RR+ ++VGHAGTLDPMATG+L++ V +ATK++
Sbjct: 6 LVVVDKPAGMTSHDVVGRCRRIFATRRVGHAGTLDPMATGVLVLGVERATKILGLLTAAA 65
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K YS RLG+ATST DA+ V + H+ + I A RG+I QVP SAIKV
Sbjct: 66 KSYSATIRLGQATSTDDAEGDVARSVDARHLTSQAIEAAVGGLRGDIHQVPSTVSAIKV 124
>sp|A6LEL7|TRUB_PARD8 tRNA pseudouridine synthase B OS=Parabacteroides distasonis (strain
ATCC 8503 / DSM 20701 / NCTC 11152) GN=truB PE=3 SV=1
Length = 235
Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/127 (46%), Positives = 79/127 (62%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ NKP WTSF + K R R +KVKK VGHAGTLDP+ATG++IVC G+ATK
Sbjct: 6 GEILYFNKPLTWTSFDLVNKFRYKLSRKLKVKKIKVGHAGTLDPLATGVMIVCTGRATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
+D +Q K Y +LGE T ++D + + P EHI E + + +F G I Q+PP
Sbjct: 66 IDEFQYQTKEYIATLKLGETTPSFDLEKEIDAVYPTEHITRELVEEVLKTFVGTIQQIPP 125
Query: 423 MFSAIKV 429
+FSA KV
Sbjct: 126 VFSACKV 132
>sp|B1ZX46|TRUB_OPITP tRNA pseudouridine synthase B OS=Opitutus terrae (strain DSM 11246
/ PB90-1) GN=truB PE=3 SV=1
Length = 241
Score = 114 bits (285), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 76/119 (63%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++LV+KP TS V +LRR + +K++GHAGTLDPMATGL+I+ +GKAT + +
Sbjct: 11 VLLVDKPTAHTSHDVVARLRRKLNMKRIGHAGTLDPMATGLMILLIGKATTISQYLTSLD 70
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG+ T + DAD V+ P + +IR A A F G+ +Q PPM+SAIKV
Sbjct: 71 KEYEGTIELGKVTDSQDADGEVLSTLPVPPFTEAEIRAAMAGFMGDQYQTPPMYSAIKV 129
>sp|A2C4C0|TRUB_PROM1 tRNA pseudouridine synthase B OS=Prochlorococcus marinus (strain
NATL1A) GN=truB PE=3 SV=1
Length = 314
Score = 112 bits (281), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 79/124 (63%), Gaps = 2/124 (1%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
PFG V+++KP G TS +LR++ ++K+GH+GTLDP TG+L + +G AT+L+
Sbjct: 4 PFG-FVVIDKPSGLTSHDCVNRLRKVFGIRKIGHSGTLDPAVTGVLPIAIGDATRLISYL 62
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
QG K Y+G+ +LG T+T D +I+ + W I DI +FRGEI Q PP+FS+
Sbjct: 63 QGS-KAYTGIIQLGATTNTDDMQGEIIESKAWPLITQNDINYLLENFRGEILQKPPIFSS 121
Query: 427 IKVR 430
+ ++
Sbjct: 122 VHIK 125
>sp|Q9Z5I4|TRUB_MYCLE tRNA pseudouridine synthase B OS=Mycobacterium leprae (strain TN)
GN=truB PE=3 SV=1
Length = 320
Score = 112 bits (279), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 75/119 (63%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+++KP G TS V + RR+ ++VGHAGTLDPMATG+L++ V +ATK++ G
Sbjct: 14 IVVIDKPSGMTSHDVVARCRRIFCTRRVGHAGTLDPMATGVLVLGVDRATKILGLLAGAS 73
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y RLG+ TST DA+ ++Q H+ DE I A RG+I QVP SAIKV
Sbjct: 74 KEYVATIRLGQTTSTEDAEGELLQCVSARHVTDEAIATAIGRLRGDIKQVPSAVSAIKV 132
>sp|Q5L0I5|TRUB_GEOKA tRNA pseudouridine synthase B OS=Geobacillus kaustophilus (strain
HTA426) GN=truB PE=3 SV=1
Length = 285
Score = 112 bits (279), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 57/120 (47%), Positives = 75/120 (62%), Gaps = 1/120 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L+NKPKG TS K+RRL+ VKK GH GTLDP +G+L +C+GKAT++ + G
Sbjct: 4 VLLLNKPKGMTSHDCVAKVRRLLGVKKAGHTGTLDPNVSGVLPICLGKATRIAEFLTGTT 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG AT+T DAD +I P + I +I S GEI Q PPM+SA+KV
Sbjct: 64 KTYEGKVTLGAATTTEDADGDIIAARPVDRPIARAEIEAVFDSLTGEIEQTPPMYSAVKV 123
>sp|Q8A2U2|TRUB_BACTN tRNA pseudouridine synthase B OS=Bacteroides thetaiotaomicron
(strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 /
VPI-5482) GN=truB PE=3 SV=1
Length = 240
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 75/127 (59%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ NKP GWTSF V G +R R + VKK VGHAGTLDP+ATG++I+C GKATK
Sbjct: 6 GEVLFFNKPLGWTSFKVVGHVRYHICRRIGVKKLKVGHAGTLDPLATGVMILCTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y RLG T ++D + + P HI E + + F G I QVPP
Sbjct: 66 IEEFQYHTKEYVATLRLGATTPSYDLEHEIDATYPTGHITRELVEETLTHFLGAIEQVPP 125
Query: 423 MFSAIKV 429
FSA V
Sbjct: 126 AFSACMV 132
>sp|A4IME0|TRUB_GEOTN tRNA pseudouridine synthase B OS=Geobacillus thermodenitrificans
(strain NG80-2) GN=truB PE=3 SV=1
Length = 302
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/120 (46%), Positives = 76/120 (63%), Gaps = 1/120 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L+NKPKG TS K+RRL+ +KKVGH GTLDP +G+L +C+GKAT++ + G
Sbjct: 4 VLLLNKPKGMTSHDCVAKVRRLLGIKKVGHTGTLDPNVSGVLPICLGKATRIAEFLTGAT 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEH-IKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG ATST DAD +I + + I +I S G+I Q PPM+SA+KV
Sbjct: 64 KTYEGEVTLGAATSTEDADGDIIAVQTVDRTIARAEIEAVFRSLTGDIEQTPPMYSAVKV 123
>sp|Q8XJS1|TRUB_CLOPE tRNA pseudouridine synthase B OS=Clostridium perfringens (strain 13
/ Type A) GN=truB PE=3 SV=1
Length = 294
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 77/125 (61%), Gaps = 3/125 (2%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+ K G TSF V +RR+ K+KKVGH GTLDP A+G+L VC+GKATK++D K Y
Sbjct: 7 IYKNTGMTSFDVVAMVRRVAKMKKVGHTGTLDPAASGVLPVCLGKATKIIDYIMENKKVY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK---VR 430
+LG T T+D + V++ E HI ++I SF G I QVPPM+SA+K VR
Sbjct: 67 RVNLKLGMVTDTYDLEGEVLREEDASHITKDEILNCINSFVGTIDQVPPMYSALKQNGVR 126
Query: 431 VFHFS 435
++ +
Sbjct: 127 LYELA 131
>sp|Q0TPS0|TRUB_CLOP1 tRNA pseudouridine synthase B OS=Clostridium perfringens (strain
ATCC 13124 / NCTC 8237 / Type A) GN=truB PE=3 SV=1
Length = 294
Score = 110 bits (275), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 77/125 (61%), Gaps = 3/125 (2%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+ K G TSF V +RR+ K+KKVGH GTLDP A+G+L VC+GKATK++D K Y
Sbjct: 7 IYKNTGMTSFDVVAIVRRVAKMKKVGHTGTLDPAASGVLPVCLGKATKIIDYIMENKKVY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK---VR 430
+LG T T+D + V++ E HI ++I SF G I QVPPM+SA+K VR
Sbjct: 67 RVNLKLGMVTDTYDLEGEVLREEDASHITKDEILNCINSFLGTIDQVPPMYSALKQNGVR 126
Query: 431 VFHFS 435
++ +
Sbjct: 127 LYELA 131
>sp|A5N845|TRUB_CLOK5 tRNA pseudouridine synthase B OS=Clostridium kluyveri (strain ATCC
8527 / DSM 555 / NCIMB 10680) GN=truB PE=3 SV=1
Length = 289
Score = 110 bits (274), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 57/116 (49%), Positives = 77/116 (66%), Gaps = 1/116 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+NKP+G TSF V K+R ++K +KVGH GTLDPMA+G+L +CVG+ATK D K Y
Sbjct: 7 INKPEGMTSFDVVRKVRFMLKNEKVGHTGTLDPMASGVLPICVGRATKFADYMVESKKIY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
RLG T T+D + V+ ++K +DI + SF+GEI QVPPM+SA+KV
Sbjct: 67 LAELRLGITTETYDREGSVVNTRGV-YLKKKDIIEEILSFQGEIEQVPPMYSALKV 121
>sp|Q0SSD7|TRUB_CLOPS tRNA pseudouridine synthase B OS=Clostridium perfringens (strain
SM101 / Type A) GN=truB PE=3 SV=1
Length = 294
Score = 110 bits (274), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 77/125 (61%), Gaps = 3/125 (2%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+ K G TSF V +RR+ K+KKVGH GTLDP A+G+L VC+GKATK++D K Y
Sbjct: 7 IYKNTGMTSFDVVAMVRRVAKMKKVGHTGTLDPEASGVLPVCLGKATKIIDYIMENKKVY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK---VR 430
+LG T T+D + V++ E HI ++I SF G I QVPPM+SA+K VR
Sbjct: 67 RVNLKLGMVTDTYDLEGEVLREEDASHITKDEILNCINSFVGTIDQVPPMYSALKQNGVR 126
Query: 431 VFHFS 435
++ +
Sbjct: 127 LYELA 131
>sp|C3PH13|TRUB_CORA7 tRNA pseudouridine synthase B OS=Corynebacterium aurimucosum
(strain ATCC 700975 / DSM 44827 / CN-1) GN=truB PE=3
SV=1
Length = 297
Score = 108 bits (271), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 71/119 (59%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
+V+V+KP G TS V GKLRR + +KVGHAGTLDPMATG+L+V + + TK +
Sbjct: 10 LVVVDKPAGMTSHDVVGKLRRFFRTRKVGHAGTLDPMATGVLVVGIERGTKFLAHMVAST 69
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y RLG AT T DA+ EP ++D I + A+ G+I Q P SAIKV
Sbjct: 70 KAYDATIRLGTATHTDDAEGEATWGEPATAVEDSAIAREIAALTGDIMQRPAAVSAIKV 128
>sp|Q46JB9|TRUB_PROMT tRNA pseudouridine synthase B OS=Prochlorococcus marinus (strain
NATL2A) GN=truB PE=3 SV=1
Length = 314
Score = 108 bits (270), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 77/124 (62%), Gaps = 2/124 (1%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
PFG V+++KP G TS +LR++ +KK+GH+GTLDP TG+L + +G AT+L+
Sbjct: 4 PFG-FVVIDKPSGLTSHDCVNRLRKVFGIKKIGHSGTLDPAVTGVLPIAIGDATRLISYL 62
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
QG K Y G+ +LG T+T D +I+ + W I I +FRGEI Q PP+FS+
Sbjct: 63 QGS-KAYRGIIQLGATTNTDDMQGEIIESKAWPLITQNYINYLLENFRGEILQKPPIFSS 121
Query: 427 IKVR 430
+ ++
Sbjct: 122 VHIK 125
>sp|Q04ED7|TRUB_OENOB tRNA pseudouridine synthase B OS=Oenococcus oeni (strain ATCC
BAA-331 / PSU-1) GN=truB PE=3 SV=1
Length = 298
Score = 108 bits (270), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 60/128 (46%), Positives = 77/128 (60%), Gaps = 1/128 (0%)
Query: 308 FGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQ 367
+ +VLV+KP G TSF V KLR++ + K+VGH GTLDP TGLL++ +GKATKL+D Q
Sbjct: 2 YNGIVLVDKPAGLTSFDVVAKLRKIFQQKQVGHTGTLDPSVTGLLVIVLGKATKLIDYLQ 61
Query: 368 GMIKGYSGVFRLGEATSTWDADSPVIQREPW-EHIKDEDIRKAAASFRGEIWQVPPMFSA 426
K Y G LG T T D D V + + E I D + A SF G Q+PPM+SA
Sbjct: 62 ENQKQYRGTLILGLKTDTQDMDGQVTEMQFLKEAIADFKKKAAFDSFLGSSDQLPPMYSA 121
Query: 427 IKVRVFHF 434
+KV H
Sbjct: 122 VKVGGKHL 129
>sp|A6KZJ9|TRUB_BACV8 tRNA pseudouridine synthase B OS=Bacteroides vulgatus (strain ATCC
8482 / DSM 1447 / NCTC 11154) GN=truB PE=3 SV=1
Length = 235
Score = 108 bits (269), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 78/127 (61%), Gaps = 6/127 (4%)
Query: 309 GTMVLVNKPKGWTSFTVCGKLR----RLVKVKK--VGHAGTLDPMATGLLIVCVGKATKL 362
G ++ +KP WTSF V K+R R + VKK VGHAGTLDP+ATG++I+C GKATK
Sbjct: 6 GEVLYFDKPLKWTSFAVVNKIRYHICRKLGVKKIKVGHAGTLDPLATGVMIICTGKATKR 65
Query: 363 VDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPP 422
++ +Q K Y +LG T ++D + + P EHI E + +A F G I Q+PP
Sbjct: 66 IEEFQYHTKEYIATLQLGATTPSFDLEKEIDATYPTEHITRELVEEALQRFIGRIEQIPP 125
Query: 423 MFSAIKV 429
+FSA KV
Sbjct: 126 VFSACKV 132
>sp|Q6F1I4|TRUB_MESFL tRNA pseudouridine synthase B OS=Mesoplasma florum (strain ATCC
33453 / NBRC 100688 / NCTC 11704 / L1) GN=truB PE=3 SV=1
Length = 286
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 81/121 (66%), Gaps = 3/121 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++++NKPKG T+ + KL+R + VKK+GHAGTLDP+ATG++I + TKL D +
Sbjct: 6 IIILNKPKGLTTNHLIQKLKRKLNVKKIGHAGTLDPLATGVVICLINNGTKLSDYFLNEN 65
Query: 371 KGYSGVFRLGEATSTWDADSPVI-QREPWEHIKDEDIRKAAASFRGEIW-QVPPMFSAIK 428
K Y +L +AT T+D+D +I ++EP++ I+ E + K A F G + Q PPM+SAIK
Sbjct: 66 KAYEVTMKLFQATDTYDSDGSIIEEQEPFK-IEQEQVEKVIAKFNGLAYEQEPPMYSAIK 124
Query: 429 V 429
+
Sbjct: 125 I 125
>sp|Q03FS1|TRUB_PEDPA tRNA pseudouridine synthase B OS=Pediococcus pentosaceus (strain
ATCC 25745 / 183-1w) GN=truB PE=3 SV=1
Length = 299
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/121 (42%), Positives = 78/121 (64%), Gaps = 1/121 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++ +NK +G TS V K+R +++ KKVGH+GTLDP G+L +CVG+ATK+VD G
Sbjct: 4 IIPINKERGMTSHDVVAKVRGILRTKKVGHSGTLDPSVDGVLPICVGRATKVVDYLMGFG 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPW-EHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
K Y G LG +T+T D D V++ + E + DE I + + G + Q+PPM+SA+KV
Sbjct: 64 KVYQGSITLGFSTTTEDLDGEVVETKKLDEPLTDEQINQTLTAMTGTLIQIPPMYSAVKV 123
Query: 430 R 430
+
Sbjct: 124 K 124
>sp|A2RL47|TRUB_LACLM tRNA pseudouridine synthase B OS=Lactococcus lactis subsp. cremoris
(strain MG1363) GN=truB PE=3 SV=1
Length = 330
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 77/117 (65%), Gaps = 1/117 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V K GWTSF V KLR ++K KK+GH GTLDP TG+L + VGK+T+L++ + K Y
Sbjct: 11 VYKEAGWTSFDVVAKLRGILKTKKIGHGGTLDPSVTGVLPIAVGKSTRLLEYMEAAGKIY 70
Query: 374 SGVFRLGEATSTWDADSPVIQREPWE-HIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
G +G +T T DAD ++ + P + ++ + +I A + F G+I Q+PPM+SA+K+
Sbjct: 71 EGQVTIGFSTETEDADGAIVNQTPVKNNLTESEIDSAMSHFVGKIKQIPPMYSAVKI 127
>sp|B1GZN9|TRUB_UNCTG tRNA pseudouridine synthase B OS=Uncultured termite group 1
bacterium phylotype Rs-D17 GN=truB PE=3 SV=1
Length = 230
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 75/118 (63%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP G TSF K+++++ V+K GH GTLDP +TGLL+V +GKATKL ++
Sbjct: 11 LLLLDKPFGITSFDAVYKIKKVLNVEKTGHCGTLDPASTGLLLVLMGKATKLQAKFMKKD 70
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y F LG T + D D VI +I E I+K F GEI+Q+PPM+SA+K
Sbjct: 71 KVYLSSFLLGMVTDSGDLDGKVISENSVLNINIEKIKKMVEMFEGEIFQIPPMYSALK 128
>sp|P59884|TRUB_SYNPX tRNA pseudouridine synthase B OS=Synechococcus sp. (strain WH8102)
GN=truB PE=3 SV=1
Length = 291
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 79/125 (63%), Gaps = 2/125 (1%)
Query: 305 DGPFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVD 364
DGPFG V+++KP G TS + +LRR +K+VGH GTLDP TG+L + +G AT+L+
Sbjct: 2 DGPFG-FVVIDKPAGHTSHSCVSRLRRCYGLKRVGHGGTLDPAVTGVLPIALGPATRLLP 60
Query: 365 RYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMF 424
G K Y GV +LG TS+ D + ++++ PW ++ E++ A A FRG I Q PP
Sbjct: 61 YLPG-DKTYRGVIQLGSITSSDDLEGELLRQAPWPDLQPEELEVALAPFRGPIQQRPPQV 119
Query: 425 SAIKV 429
SA+ V
Sbjct: 120 SAVHV 124
>sp|Q3Z7U5|TRUB_DEHE1 tRNA pseudouridine synthase B OS=Dehalococcoides ethenogenes
(strain 195) GN=truB PE=3 SV=1
Length = 300
Score = 106 bits (265), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 77/125 (61%), Gaps = 3/125 (2%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+NKP G TSF V K+R + KKVGH G LDP ATG++ V +G AT+L++ + K Y
Sbjct: 7 INKPPGLTSFGVVSKVRHIYSQKKVGHGGMLDPSATGVIPVFLGSATRLIEYLSSVRKTY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK---VR 430
LG T ++D++ + R+ EHI + +R A F GEI Q+PPM+SA+K VR
Sbjct: 67 LAEIELGTETDSYDSEGEITSRKSCEHITADMVRNALPDFLGEITQIPPMYSAVKHRGVR 126
Query: 431 VFHFS 435
+++ +
Sbjct: 127 LYNLA 131
>sp|Q02Z55|TRUB_LACLS tRNA pseudouridine synthase B OS=Lactococcus lactis subsp. cremoris
(strain SK11) GN=truB PE=3 SV=1
Length = 330
Score = 106 bits (265), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 77/117 (65%), Gaps = 1/117 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V K GWTSF V KLR ++K KK+GH GTLDP TG+L + VGK+T+L++ + K Y
Sbjct: 11 VYKEAGWTSFDVVAKLRCILKTKKIGHGGTLDPSVTGVLPIAVGKSTRLLEYMEAAGKIY 70
Query: 374 SGVFRLGEATSTWDADSPVIQREPWE-HIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
G +G +T T DAD ++ + P + ++ + +I A + F G+I Q+PPM+SA+K+
Sbjct: 71 EGQVTIGFSTETEDADGAIVNQTPVKNNLTESEIDSAMSRFVGKIKQIPPMYSAVKI 127
>sp|Q9CGH0|TRUB_LACLA tRNA pseudouridine synthase B OS=Lactococcus lactis subsp. lactis
(strain IL1403) GN=truB PE=3 SV=1
Length = 329
Score = 106 bits (264), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 52/117 (44%), Positives = 75/117 (64%), Gaps = 1/117 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V K GWTSF V KLR ++K KK+GH GTLDP TG+L V VGK+T+L++ + K Y
Sbjct: 11 VYKEAGWTSFDVVAKLRGILKTKKIGHGGTLDPSVTGVLPVAVGKSTRLLEYMEAAGKIY 70
Query: 374 SGVFRLGEATSTWDADSPVIQREPWE-HIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
G +G +T T DAD ++ + P E + + +I +F G+I Q+PPM+SA+K+
Sbjct: 71 EGEVTIGFSTETEDADGEIVSKTPVERELTESEIDSVMKNFIGKIKQIPPMYSAVKI 127
>sp|Q5NZR9|TRUB_AROAE tRNA pseudouridine synthase B OS=Aromatoleum aromaticum (strain
EbN1) GN=truB PE=3 SV=1
Length = 308
Score = 106 bits (264), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 55/118 (46%), Positives = 71/118 (60%), Gaps = 1/118 (0%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP+G TS RRL+ K GH GTLDPMATGLL + +G+ATK
Sbjct: 17 VLLLDKPRGLTSNAALQTARRLLNAAKAGHTGTLDPMATGLLPLTLGEATKFSQMLLDAD 76
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIK 428
K Y RLG T T DA+ I P H+ D+ IR+A A+ GEI QVPPM+SA+K
Sbjct: 77 KAYEATVRLGIETDTGDAEGAAIATAPV-HVTDDSIRQALAALTGEIEQVPPMYSALK 133
>sp|Q1QSZ2|TRUB_CHRSD tRNA pseudouridine synthase B OS=Chromohalobacter salexigens
(strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=truB
PE=3 SV=1
Length = 307
Score = 105 bits (262), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 56/122 (45%), Positives = 72/122 (59%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRY 366
P ++L++K G +S ++RRL +K GH GTLDPMATGLL VC G+ATK
Sbjct: 9 PIDGVLLLDKAPGVSSNRALQQVRRLYDAQKAGHTGTLDPMATGLLPVCFGEATKFSAYL 68
Query: 367 QGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSA 426
K Y RLGE T T DA+ VI+ + + DI A A FRGE+ QVPPM+SA
Sbjct: 69 LDADKTYRTWVRLGEVTDTGDAEGTVIEHHSVPALDERDIEAALAGFRGEVEQVPPMYSA 128
Query: 427 IK 428
+K
Sbjct: 129 LK 130
>sp|Q16CE8|TRUB_ROSDO tRNA pseudouridine synthase B OS=Roseobacter denitrificans (strain
ATCC 33942 / OCh 114) GN=truB PE=3 SV=1
Length = 303
Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/118 (49%), Positives = 78/118 (66%), Gaps = 1/118 (0%)
Query: 312 VLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIK 371
++V+KP G TS V K+R + KK GHAGTLDP ATG+L V +G+ATK V G +K
Sbjct: 14 LIVDKPAGLTSTAVVNKVRWALDAKKAGHAGTLDPDATGVLAVALGEATKTVPYVTGALK 73
Query: 372 GYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
Y RLG+AT+T DA+ VI + +DE I++A ++F G+I QVPP FSA+KV
Sbjct: 74 AYEFEIRLGQATNTDDAEGEVIAQSDLRPTEDE-IKEALSAFIGDIEQVPPQFSAVKV 130
>sp|A0PQD9|TRUB_MYCUA tRNA pseudouridine synthase B OS=Mycobacterium ulcerans (strain
Agy99) GN=truB PE=3 SV=1
Length = 301
Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/126 (43%), Positives = 76/126 (60%), Gaps = 2/126 (1%)
Query: 306 GP-FG-TMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLV 363
GP FG +V+V+KP TS V G+ RR+ +++GHAGTLDPMATG+L++ + +ATK++
Sbjct: 7 GPGFGPGIVVVDKPGAMTSHDVVGRCRRIFGTRRLGHAGTLDPMATGVLVIGIERATKIL 66
Query: 364 DRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPM 423
K Y+ RLG+ TST DA+ + EH+ E I A G+I QVP
Sbjct: 67 GLLIATSKSYAATIRLGQTTSTEDAEGEPLASVSAEHVAPEAIAAAILDLTGDIRQVPSA 126
Query: 424 FSAIKV 429
SAIKV
Sbjct: 127 VSAIKV 132
>sp|Q97I48|TRUB_CLOAB tRNA pseudouridine synthase B OS=Clostridium acetobutylicum (strain
ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787)
GN=truB PE=3 SV=1
Length = 289
Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 76/114 (66%), Gaps = 1/114 (0%)
Query: 316 KPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSG 375
KP G TSF V +++++ K KKVGH GTLDP+A+G+L +C+GKATK+VD K Y
Sbjct: 9 KPIGLTSFDVVRQVKKISKEKKVGHTGTLDPLASGVLPICIGKATKIVDFVMEGKKIYDA 68
Query: 376 VFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
+LGE + T+D + +++ + +I +A SF+GEI QVPPM+SA+KV
Sbjct: 69 EMKLGEISDTYDREGKILKVNQVTS-SENNIVEAIMSFQGEILQVPPMYSALKV 121
>sp|Q6AG41|TRUB_LEIXX tRNA pseudouridine synthase B OS=Leifsonia xyli subsp. xyli (strain
CTCB07) GN=truB PE=3 SV=1
Length = 302
Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 76/122 (62%), Gaps = 3/122 (2%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++L++KP GWTS V ++RRL +KVGHAGTLDPMATGLL++ + +T+L+ G
Sbjct: 8 LLLIDKPGGWTSHDVVARVRRLAGTRKVGHAGTLDPMATGLLVLGLNSSTRLLTYIVGAE 67
Query: 371 KGYSGVFRLGEATSTWDADSPVIQR---EPWEHIKDEDIRKAAASFRGEIWQVPPMFSAI 427
K Y G RLG AT+T D + +++R + + I + A+ GEI QVP SA+
Sbjct: 68 KEYVGTIRLGAATTTDDIEGEILERAEPAALAAVAESSIAEGIAALTGEIEQVPSAVSAV 127
Query: 428 KV 429
KV
Sbjct: 128 KV 129
>sp|A7GG03|TRUB_CLOBL tRNA pseudouridine synthase B OS=Clostridium botulinum (strain
Langeland / NCTC 10281 / Type F) GN=truB PE=3 SV=1
Length = 289
Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/116 (44%), Positives = 76/116 (65%), Gaps = 1/116 (0%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
V KPKG TSF V +R++ K+KKVGH GTLDP+A+G+L +C+GKATK+VD K Y
Sbjct: 7 VLKPKGITSFDVVRDIRKIAKIKKVGHTGTLDPLASGVLPICIGKATKIVDYIMEGTKTY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
+LG T T+D + V++ E ++ ++ K + G+I QVPPM+SA+K+
Sbjct: 67 RVEMKLGTTTDTYDREGTVLE-EKEINLTPIEVEKTIKKYIGDIDQVPPMYSALKI 121
>sp|A5FQR4|TRUB_DEHSB tRNA pseudouridine synthase B OS=Dehalococcoides sp. (strain BAV1)
GN=truB PE=3 SV=1
Length = 300
Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 75/117 (64%)
Query: 314 VNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGY 373
+NKP G TSF V K+RR+ K+VGH GTLDP ATG++ V +GK+T+L++ + K Y
Sbjct: 7 INKPFGITSFDVVAKVRRIYSQKRVGHGGTLDPYATGVIPVFLGKSTRLIEYLSSVSKTY 66
Query: 374 SGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKVR 430
LG T ++D++ + R+ +++ E I K F+GEI Q+PPM+SA+K R
Sbjct: 67 LAEIELGVETDSYDSEGEITFRKTCDYVTREMIYKTLMDFQGEIIQIPPMYSAVKHR 123
>sp|Q8R5X8|TRUB_FUSNN tRNA pseudouridine synthase B OS=Fusobacterium nucleatum subsp.
nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 /
LMG 13131) GN=truB PE=3 SV=1
Length = 287
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 83/128 (64%), Gaps = 4/128 (3%)
Query: 311 MVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMI 370
++++NKPKG TSF V KL++ +K KK+GH GTLDP+A G+++VCVGKATKL +
Sbjct: 4 IIVINKPKGITSFDVIRKLKKFLKTKKIGHTGTLDPLAIGVMLVCVGKATKLASDLEAKD 63
Query: 371 KGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFSAIKV- 429
K Y F +G AT T+D + I E + E++ ++ F G I QVPPM+SAIK+
Sbjct: 64 KVYIADFDIGYATDTYDIEGKKIAENIIE-VSKENLEQSLKKFIGNIKQVPPMYSAIKID 122
Query: 430 --RVFHFS 435
+++H +
Sbjct: 123 GNKLYHLA 130
>sp|Q38W87|TRUB_LACSS tRNA pseudouridine synthase B OS=Lactobacillus sakei subsp. sakei
(strain 23K) GN=truB PE=3 SV=1
Length = 305
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/115 (46%), Positives = 76/115 (66%), Gaps = 1/115 (0%)
Query: 316 KPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSG 375
K +G TS K+RR++ +KKVGH+GTLDP G+L +C+G+ATK+VD+ K Y+G
Sbjct: 9 KERGMTSNDCVFKVRRILHMKKVGHSGTLDPNVDGVLPICIGQATKVVDQLVHSGKVYTG 68
Query: 376 VFRLGEATSTWDADSPVIQREPW-EHIKDEDIRKAAASFRGEIWQVPPMFSAIKV 429
LG +T+T D D V++ + E I E I++ ASF GE Q+PPMFSA+KV
Sbjct: 69 EITLGLSTTTEDLDGEVVEEQQLTEPISTEKIKETLASFLGESIQIPPMFSAVKV 123
>sp|Q9PKU2|TRUB_CHLMU tRNA pseudouridine synthase B OS=Chlamydia muridarum (strain MoPn /
Nigg) GN=truB PE=3 SV=1
Length = 241
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 80/125 (64%), Gaps = 2/125 (1%)
Query: 307 PFGTMVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVG-KATKLVDR 365
P ++LV+KP+G TSF++ L RL+ VKK+GHAGTLDP ATG++++ +G K T+L D
Sbjct: 7 PIEGVLLVDKPQGRTSFSLIRSLVRLIGVKKIGHAGTLDPFATGVMVMLIGRKFTRLSDI 66
Query: 366 YQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIRKAAASFRGEIWQVPPMFS 425
K YS V LG T T+D D ++ R E++ + + F+GEI QVPPMFS
Sbjct: 67 MLFEDKEYSAVAHLGTTTDTYDCDGKIVGRSKKVPTM-EEVLECTSYFQGEIQQVPPMFS 125
Query: 426 AIKVR 430
A KV+
Sbjct: 126 AKKVQ 130
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.133 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 173,886,028
Number of Sequences: 539616
Number of extensions: 8016917
Number of successful extensions: 23986
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 233
Number of HSP's that attempted gapping in prelim test: 22003
Number of HSP's gapped (non-prelim): 1423
length of query: 435
length of database: 191,569,459
effective HSP length: 120
effective length of query: 315
effective length of database: 126,815,539
effective search space: 39946894785
effective search space used: 39946894785
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 63 (28.9 bits)