Query 013858
Match_columns 435
No_of_seqs 334 out of 2811
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 08:06:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013858.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013858hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0331 ATP-dependent RNA heli 100.0 6.5E-59 1.4E-63 447.8 29.9 306 122-434 92-401 (519)
2 PTZ00110 helicase; Provisional 100.0 6.9E-55 1.5E-59 441.0 41.5 351 73-434 85-437 (545)
3 KOG0330 ATP-dependent RNA heli 100.0 9.5E-57 2.1E-61 407.2 24.7 300 119-433 59-359 (476)
4 KOG0333 U5 snRNP-like RNA heli 100.0 6.8E-56 1.5E-60 414.9 27.2 339 81-434 210-577 (673)
5 KOG0341 DEAD-box protein abstr 100.0 3.4E-56 7.4E-61 402.9 16.0 350 70-433 123-480 (610)
6 KOG0339 ATP-dependent RNA heli 100.0 4E-54 8.7E-59 401.2 29.1 345 76-433 182-527 (731)
7 COG0513 SrmB Superfamily II DN 100.0 3.9E-53 8.5E-58 424.3 37.5 302 121-434 29-333 (513)
8 PLN00206 DEAD-box ATP-dependen 100.0 5.5E-52 1.2E-56 418.7 41.3 343 79-434 82-428 (518)
9 KOG0336 ATP-dependent RNA heli 100.0 1.3E-52 2.7E-57 382.1 25.5 350 74-433 169-524 (629)
10 KOG0328 Predicted ATP-dependen 100.0 1.5E-52 3.3E-57 364.7 22.2 305 115-434 21-326 (400)
11 PRK11776 ATP-dependent RNA hel 100.0 9.3E-50 2E-54 399.4 38.3 299 121-434 4-302 (460)
12 KOG0338 ATP-dependent RNA heli 100.0 9.8E-52 2.1E-56 385.7 21.9 302 120-433 180-485 (691)
13 PRK04837 ATP-dependent RNA hel 100.0 1.4E-49 3.1E-54 393.9 38.6 304 121-434 8-315 (423)
14 PRK10590 ATP-dependent RNA hel 100.0 2.7E-49 5.8E-54 394.5 38.1 303 122-434 2-305 (456)
15 KOG0334 RNA helicase [RNA proc 100.0 6.7E-51 1.5E-55 411.2 26.5 342 80-434 327-673 (997)
16 PRK11634 ATP-dependent RNA hel 100.0 2.5E-49 5.4E-54 404.0 38.2 300 121-434 6-305 (629)
17 PRK04537 ATP-dependent RNA hel 100.0 7.1E-49 1.5E-53 398.5 38.0 304 121-434 9-317 (572)
18 KOG0335 ATP-dependent RNA heli 100.0 5.7E-50 1.2E-54 379.5 24.4 322 112-434 65-397 (482)
19 PRK11192 ATP-dependent RNA hel 100.0 1.7E-47 3.7E-52 380.7 38.8 302 122-434 2-305 (434)
20 KOG0326 ATP-dependent RNA heli 100.0 2.4E-50 5.1E-55 356.6 14.0 298 121-434 85-382 (459)
21 KOG0343 RNA Helicase [RNA proc 100.0 1E-48 2.2E-53 368.5 25.9 304 119-434 67-375 (758)
22 KOG0342 ATP-dependent RNA heli 100.0 6.4E-48 1.4E-52 359.7 26.6 306 120-434 81-390 (543)
23 KOG0340 ATP-dependent RNA heli 100.0 3.2E-48 7E-53 347.8 23.1 302 120-433 6-313 (442)
24 PRK01297 ATP-dependent RNA hel 100.0 2.8E-46 6.1E-51 375.2 38.2 306 119-434 85-395 (475)
25 KOG0346 RNA helicase [RNA proc 100.0 1.3E-47 2.7E-52 352.5 24.5 305 121-433 19-327 (569)
26 KOG0345 ATP-dependent RNA heli 100.0 9.4E-47 2E-51 349.7 30.5 304 122-434 5-317 (567)
27 PTZ00424 helicase 45; Provisio 100.0 7E-45 1.5E-49 359.2 37.8 300 120-434 27-327 (401)
28 KOG0348 ATP-dependent RNA heli 100.0 1.4E-45 3.1E-50 346.3 28.4 312 118-434 133-507 (708)
29 KOG0332 ATP-dependent RNA heli 100.0 1.4E-44 3E-49 326.3 24.3 304 114-435 83-391 (477)
30 KOG0347 RNA helicase [RNA proc 100.0 1.2E-44 2.7E-49 341.0 14.6 307 117-434 177-523 (731)
31 KOG0337 ATP-dependent RNA heli 100.0 2.5E-43 5.4E-48 322.8 19.1 301 120-433 20-320 (529)
32 KOG0327 Translation initiation 100.0 9.2E-43 2E-47 317.1 21.5 298 120-434 25-323 (397)
33 KOG4284 DEAD box protein [Tran 100.0 1.8E-42 3.8E-47 331.5 19.6 305 115-434 19-332 (980)
34 TIGR03817 DECH_helic helicase/ 100.0 1.5E-40 3.3E-45 345.8 34.3 288 127-434 20-339 (742)
35 PRK02362 ski2-like helicase; P 100.0 1.7E-38 3.6E-43 333.8 28.6 290 122-434 2-339 (737)
36 KOG0344 ATP-dependent RNA heli 100.0 7.9E-39 1.7E-43 305.7 20.5 312 113-434 124-448 (593)
37 PRK00254 ski2-like helicase; P 100.0 9.7E-38 2.1E-42 327.2 30.6 291 122-434 2-331 (720)
38 TIGR02621 cas3_GSU0051 CRISPR- 100.0 6.6E-37 1.4E-41 313.1 32.3 274 139-434 12-346 (844)
39 PRK13767 ATP-dependent helicas 100.0 7.8E-37 1.7E-41 324.2 33.1 297 128-434 18-350 (876)
40 TIGR00614 recQ_fam ATP-depende 100.0 1E-36 2.3E-41 304.9 30.9 269 137-434 5-286 (470)
41 PLN03137 ATP-dependent DNA hel 100.0 2E-36 4.3E-41 313.9 33.1 280 126-434 442-740 (1195)
42 KOG0350 DEAD-box ATP-dependent 100.0 6.1E-37 1.3E-41 286.3 22.1 291 131-435 147-494 (620)
43 PRK01172 ski2-like helicase; P 100.0 2.9E-36 6.3E-41 314.8 29.0 286 122-434 2-321 (674)
44 PRK11057 ATP-dependent DNA hel 100.0 1.9E-35 4.1E-40 303.4 33.2 275 129-434 10-296 (607)
45 COG1201 Lhr Lhr-like helicases 100.0 7E-36 1.5E-40 304.0 28.9 296 127-434 7-314 (814)
46 TIGR01389 recQ ATP-dependent D 100.0 6.6E-35 1.4E-39 300.2 30.2 266 138-434 8-284 (591)
47 TIGR00580 mfd transcription-re 100.0 7.4E-34 1.6E-38 298.6 34.2 274 128-434 436-722 (926)
48 PRK10689 transcription-repair 100.0 6.6E-34 1.4E-38 305.1 34.2 272 130-434 588-871 (1147)
49 PRK09401 reverse gyrase; Revie 100.0 4.2E-34 9.1E-39 307.2 31.7 265 135-431 72-383 (1176)
50 TIGR01970 DEAH_box_HrpB ATP-de 100.0 3.8E-33 8.3E-38 290.4 31.5 261 147-434 6-272 (819)
51 KOG0926 DEAH-box RNA helicase 100.0 1.2E-33 2.5E-38 276.6 22.6 235 142-396 254-503 (1172)
52 PRK11664 ATP-dependent RNA hel 100.0 7.4E-33 1.6E-37 288.9 29.9 261 147-434 9-275 (812)
53 PRK14701 reverse gyrase; Provi 100.0 2E-32 4.3E-37 300.2 33.4 273 131-432 67-386 (1638)
54 PRK10917 ATP-dependent DNA hel 100.0 6.4E-32 1.4E-36 280.2 33.0 272 131-434 249-541 (681)
55 TIGR01054 rgy reverse gyrase. 100.0 4.3E-32 9.3E-37 292.2 31.8 269 132-431 67-382 (1171)
56 TIGR00643 recG ATP-dependent D 100.0 2E-31 4.3E-36 274.9 32.7 273 131-434 224-518 (630)
57 PRK09751 putative ATP-dependen 100.0 6.2E-32 1.3E-36 291.5 28.9 262 163-434 1-337 (1490)
58 PHA02653 RNA helicase NPH-II; 100.0 1.4E-31 3E-36 272.5 29.2 266 146-434 167-456 (675)
59 cd00268 DEADc DEAD-box helicas 100.0 1.4E-31 2.9E-36 239.4 25.5 202 123-328 1-202 (203)
60 COG1204 Superfamily II helicas 100.0 7.1E-32 1.5E-36 278.2 23.9 288 127-435 15-351 (766)
61 COG1202 Superfamily II helicas 100.0 1.9E-31 4.2E-36 253.4 24.8 297 122-434 195-500 (830)
62 KOG0329 ATP-dependent RNA heli 100.0 5.1E-33 1.1E-37 239.5 12.7 253 122-388 43-297 (387)
63 COG1205 Distinct helicase fami 100.0 3.5E-30 7.7E-35 269.3 30.4 291 129-434 56-374 (851)
64 KOG0922 DEAH-box RNA helicase 100.0 8.1E-30 1.8E-34 247.9 25.2 262 145-433 53-325 (674)
65 COG0514 RecQ Superfamily II DN 100.0 4.2E-30 9E-35 253.1 23.0 269 137-434 11-290 (590)
66 TIGR01587 cas3_core CRISPR-ass 100.0 5.1E-30 1.1E-34 249.3 22.9 255 160-434 1-288 (358)
67 PHA02558 uvsW UvsW helicase; P 100.0 2.5E-29 5.5E-34 253.0 28.2 264 141-434 112-405 (501)
68 TIGR03158 cas3_cyano CRISPR-as 100.0 1.3E-28 2.9E-33 237.3 30.1 268 147-434 1-328 (357)
69 PRK11131 ATP-dependent RNA hel 100.0 4.6E-29 1E-33 265.0 29.2 257 147-434 78-347 (1294)
70 COG1643 HrpA HrpA-like helicas 100.0 1.9E-28 4.2E-33 251.6 25.9 263 145-433 52-322 (845)
71 COG1111 MPH1 ERCC4-like helica 100.0 5E-27 1.1E-31 221.8 31.0 167 140-316 12-178 (542)
72 TIGR01967 DEAH_box_HrpA ATP-de 100.0 5.2E-28 1.1E-32 257.9 25.6 256 150-434 74-340 (1283)
73 KOG0923 mRNA splicing factor A 100.0 8.7E-29 1.9E-33 238.5 17.3 268 140-433 262-541 (902)
74 KOG0349 Putative DEAD-box RNA 100.0 8.2E-29 1.8E-33 228.1 16.2 242 193-434 285-568 (725)
75 KOG0952 DNA/RNA helicase MER3/ 100.0 1.2E-27 2.6E-32 241.3 21.1 289 136-435 103-433 (1230)
76 PRK12898 secA preprotein trans 100.0 3.6E-26 7.8E-31 229.6 30.6 269 142-434 102-531 (656)
77 PRK13766 Hef nuclease; Provisi 100.0 5.7E-26 1.2E-30 241.7 33.0 280 140-434 12-433 (773)
78 KOG0354 DEAD-box like helicase 100.0 4.2E-27 9.1E-32 234.6 21.0 177 128-314 47-225 (746)
79 PF00270 DEAD: DEAD/DEAH box h 99.9 1.5E-26 3.2E-31 200.5 19.2 165 145-316 1-168 (169)
80 KOG0924 mRNA splicing factor A 99.9 4.4E-27 9.6E-32 227.3 17.2 263 144-433 357-632 (1042)
81 TIGR00963 secA preprotein tran 99.9 4.6E-25 9.9E-30 222.9 27.4 269 141-434 54-463 (745)
82 TIGR03714 secA2 accessory Sec 99.9 5.2E-25 1.1E-29 223.8 27.8 269 143-434 70-482 (762)
83 PRK09200 preprotein translocas 99.9 1.1E-24 2.4E-29 223.5 30.3 269 142-434 77-486 (790)
84 KOG0352 ATP-dependent DNA heli 99.9 2.5E-26 5.3E-31 211.6 15.1 271 145-434 22-315 (641)
85 KOG0925 mRNA splicing factor A 99.9 5.4E-26 1.2E-30 212.5 16.5 284 120-433 24-322 (699)
86 KOG0351 ATP-dependent DNA heli 99.9 1.5E-25 3.4E-30 233.1 21.1 273 133-433 254-544 (941)
87 COG1200 RecG RecG-like helicas 99.9 5.2E-24 1.1E-28 209.6 27.6 275 128-434 247-543 (677)
88 PRK05580 primosome assembly pr 99.9 1.5E-23 3.1E-28 217.2 31.5 262 142-434 143-490 (679)
89 PRK09694 helicase Cas3; Provis 99.9 7.6E-24 1.6E-28 221.1 28.7 280 141-434 284-631 (878)
90 PRK13104 secA preprotein trans 99.9 8E-24 1.7E-28 216.8 28.3 268 142-434 81-502 (896)
91 KOG0947 Cytoplasmic exosomal R 99.9 1.9E-23 4.1E-28 209.0 26.6 266 142-434 296-666 (1248)
92 KOG0353 ATP-dependent DNA heli 99.9 3.4E-24 7.3E-29 194.9 18.7 285 124-433 74-376 (695)
93 TIGR00603 rad25 DNA repair hel 99.9 9.1E-24 2E-28 214.8 23.9 258 142-434 254-552 (732)
94 KOG0951 RNA helicase BRR2, DEA 99.9 4.6E-24 9.9E-29 218.2 21.6 292 128-434 296-643 (1674)
95 PRK12904 preprotein translocas 99.9 7.9E-23 1.7E-27 209.3 28.4 269 141-434 79-488 (830)
96 KOG0920 ATP-dependent RNA heli 99.9 2.8E-23 6.1E-28 212.9 22.7 285 130-433 160-479 (924)
97 COG4581 Superfamily II RNA hel 99.9 3E-23 6.5E-28 214.9 22.9 278 137-434 114-480 (1041)
98 PRK12899 secA preprotein trans 99.9 1E-21 2.2E-26 201.1 28.5 148 124-282 65-228 (970)
99 COG1061 SSL2 DNA or RNA helica 99.9 2.3E-22 5.1E-27 198.7 22.9 263 142-434 35-342 (442)
100 COG1197 Mfd Transcription-repa 99.9 3.2E-21 6.9E-26 200.1 29.2 274 128-434 579-865 (1139)
101 TIGR00595 priA primosomal prot 99.9 1.8E-21 3.8E-26 194.9 25.7 244 162-434 1-322 (505)
102 KOG0948 Nuclear exosomal RNA h 99.9 6.4E-23 1.4E-27 200.6 14.3 270 142-434 128-482 (1041)
103 PRK13107 preprotein translocas 99.9 6.6E-21 1.4E-25 194.9 24.9 268 142-434 81-507 (908)
104 smart00487 DEXDc DEAD-like hel 99.9 6.9E-21 1.5E-25 168.8 21.6 188 138-332 3-192 (201)
105 COG4098 comFA Superfamily II D 99.9 1.1E-19 2.3E-24 164.0 26.8 256 143-434 97-365 (441)
106 PRK11448 hsdR type I restricti 99.9 5.6E-20 1.2E-24 197.6 26.4 271 142-434 412-766 (1123)
107 PRK04914 ATP-dependent helicas 99.9 2.3E-19 5E-24 188.9 26.3 158 142-310 151-315 (956)
108 KOG0950 DNA polymerase theta/e 99.8 1.2E-19 2.6E-24 183.1 19.0 285 128-434 208-558 (1008)
109 PLN03142 Probable chromatin-re 99.8 3.7E-18 8.1E-23 180.4 26.4 270 143-433 169-549 (1033)
110 COG1110 Reverse gyrase [DNA re 99.8 2.3E-18 4.9E-23 174.9 23.2 267 134-432 73-391 (1187)
111 PRK12906 secA preprotein trans 99.8 6.3E-18 1.4E-22 172.9 25.5 270 140-434 77-498 (796)
112 COG1203 CRISPR-associated heli 99.8 4.3E-18 9.3E-23 178.3 20.9 281 142-434 194-504 (733)
113 TIGR01407 dinG_rel DnaQ family 99.8 2.2E-16 4.8E-21 168.7 29.6 147 128-283 231-454 (850)
114 KOG0385 Chromatin remodeling c 99.8 3.1E-17 6.8E-22 161.8 21.0 258 143-424 167-537 (971)
115 TIGR00348 hsdR type I site-spe 99.8 1.4E-16 3.1E-21 165.2 25.5 272 143-435 238-602 (667)
116 COG4096 HsdR Type I site-speci 99.8 3.7E-17 8.1E-22 163.7 19.8 268 142-434 164-491 (875)
117 cd00046 DEXDc DEAD-like helica 99.8 3.7E-17 7.9E-22 136.4 16.6 144 159-310 1-144 (144)
118 KOG0384 Chromodomain-helicase 99.7 1.3E-16 2.9E-21 164.5 11.6 323 81-432 315-760 (1373)
119 PF04851 ResIII: Type III rest 99.7 2.6E-16 5.6E-21 137.9 12.0 150 143-311 3-183 (184)
120 KOG0387 Transcription-coupled 99.7 5.2E-14 1.1E-18 139.9 27.3 277 126-431 196-605 (923)
121 COG1198 PriA Primosomal protei 99.7 1.3E-14 2.8E-19 148.1 23.6 265 142-434 197-544 (730)
122 PRK12326 preprotein translocas 99.7 4.6E-14 9.9E-19 141.9 26.8 267 141-433 76-484 (764)
123 PRK07246 bifunctional ATP-depe 99.6 1.2E-13 2.7E-18 145.9 28.3 130 143-283 245-450 (820)
124 KOG0949 Predicted helicase, DE 99.6 7.1E-15 1.5E-19 148.5 16.9 159 143-311 511-672 (1330)
125 PRK13103 secA preprotein trans 99.6 1.6E-13 3.6E-18 141.2 23.9 127 142-281 81-214 (913)
126 CHL00122 secA preprotein trans 99.6 1E-12 2.3E-17 134.8 25.6 268 142-433 75-483 (870)
127 KOG1123 RNA polymerase II tran 99.6 2E-14 4.3E-19 136.0 11.4 248 142-423 301-587 (776)
128 PRK12902 secA preprotein trans 99.6 2.2E-12 4.9E-17 132.2 27.2 129 142-283 84-220 (939)
129 PRK12900 secA preprotein trans 99.6 7.1E-13 1.5E-17 137.2 23.2 128 143-283 138-273 (1025)
130 KOG0392 SNF2 family DNA-depend 99.5 3.4E-13 7.4E-18 139.3 18.1 158 143-310 975-1138(1549)
131 KOG0391 SNF2 family DNA-depend 99.5 2.8E-13 6E-18 138.8 16.5 153 144-310 616-775 (1958)
132 PRK12903 secA preprotein trans 99.5 1.3E-11 2.8E-16 126.3 26.3 266 142-433 77-483 (925)
133 PRK08074 bifunctional ATP-depe 99.5 3.2E-11 6.9E-16 130.0 27.7 132 142-282 256-468 (928)
134 COG0556 UvrB Helicase subunit 99.4 4E-11 8.8E-16 115.0 24.0 121 300-434 386-506 (663)
135 KOG0389 SNF2 family DNA-depend 99.4 1.8E-12 3.9E-17 129.0 14.5 155 143-310 399-562 (941)
136 KOG0951 RNA helicase BRR2, DEA 99.4 2.1E-12 4.5E-17 133.9 15.5 256 145-431 1145-1438(1674)
137 PF07652 Flavi_DEAD: Flaviviru 99.4 6.3E-13 1.4E-17 107.6 8.3 136 157-315 3-141 (148)
138 TIGR00631 uvrb excinuclease AB 99.4 1.2E-10 2.5E-15 120.2 25.9 79 349-434 424-502 (655)
139 KOG1000 Chromatin remodeling p 99.4 4.8E-11 1.1E-15 113.2 20.0 263 142-423 197-541 (689)
140 KOG0390 DNA repair protein, SN 99.4 1.5E-10 3.3E-15 118.1 24.0 160 143-310 238-414 (776)
141 KOG1002 Nucleotide excision re 99.4 2.6E-10 5.5E-15 108.3 22.9 128 142-283 183-330 (791)
142 TIGR03117 cas_csf4 CRISPR-asso 99.3 1.7E-11 3.6E-16 124.5 15.5 74 153-232 11-86 (636)
143 PF00176 SNF2_N: SNF2 family N 99.3 1.4E-11 3E-16 116.8 12.6 156 147-310 1-172 (299)
144 PF06862 DUF1253: Protein of u 99.3 6.6E-10 1.4E-14 107.6 23.5 184 245-432 131-358 (442)
145 KOG4150 Predicted ATP-dependen 99.3 9.8E-11 2.1E-15 112.8 13.8 285 134-434 277-593 (1034)
146 TIGR02562 cas3_yersinia CRISPR 99.2 9.3E-10 2E-14 115.0 20.5 177 134-318 399-642 (1110)
147 COG4889 Predicted helicase [Ge 99.2 1.8E-11 3.8E-16 123.1 7.2 148 123-283 142-318 (1518)
148 KOG0921 Dosage compensation co 99.2 7.6E-11 1.6E-15 118.9 10.7 269 150-433 385-709 (1282)
149 PRK05298 excinuclease ABC subu 99.2 3.3E-09 7.2E-14 110.2 23.3 78 350-434 429-506 (652)
150 KOG0386 Chromatin remodeling c 99.2 2.3E-10 5.1E-15 116.9 12.8 129 143-284 394-530 (1157)
151 PRK14873 primosome assembly pr 99.2 3.8E-09 8.2E-14 108.9 21.9 137 162-316 164-309 (665)
152 smart00489 DEXDc3 DEAD-like he 99.2 7.1E-10 1.5E-14 103.8 14.2 73 143-217 8-84 (289)
153 smart00488 DEXDc2 DEAD-like he 99.2 7.1E-10 1.5E-14 103.8 14.2 73 143-217 8-84 (289)
154 PF02399 Herpes_ori_bp: Origin 99.1 5.7E-09 1.2E-13 106.5 21.0 246 158-434 49-336 (824)
155 KOG0953 Mitochondrial RNA heli 99.1 8.3E-10 1.8E-14 106.5 12.0 222 158-434 191-419 (700)
156 KOG4439 RNA polymerase II tran 99.1 1.8E-09 4E-14 106.6 14.0 137 143-283 325-477 (901)
157 PF07517 SecA_DEAD: SecA DEAD- 99.1 3.4E-09 7.3E-14 96.7 14.1 131 140-283 74-212 (266)
158 PRK12901 secA preprotein trans 98.9 2.6E-08 5.5E-13 104.1 16.7 128 143-283 169-305 (1112)
159 KOG0388 SNF2 family DNA-depend 98.8 1.3E-08 2.8E-13 100.7 9.1 153 144-310 568-733 (1185)
160 COG0610 Type I site-specific r 98.8 1.2E-06 2.6E-11 94.6 22.4 137 159-310 274-413 (962)
161 PRK15483 type III restriction- 98.7 1.4E-07 2.9E-12 99.3 14.3 143 160-312 61-240 (986)
162 PRK11747 dinG ATP-dependent DN 98.7 2.1E-07 4.5E-12 97.6 15.8 63 142-211 24-95 (697)
163 cd00079 HELICc Helicase superf 98.7 3E-07 6.5E-12 75.4 12.0 77 351-434 12-88 (131)
164 KOG2340 Uncharacterized conser 98.7 2E-07 4.3E-12 89.8 12.1 285 142-432 215-610 (698)
165 TIGR00604 rad3 DNA repair heli 98.7 1.6E-07 3.5E-12 99.1 11.9 75 139-218 6-84 (705)
166 KOG0952 DNA/RNA helicase MER3/ 98.7 1.8E-08 4E-13 103.9 4.4 167 143-321 927-1103(1230)
167 COG1199 DinG Rad3-related DNA 98.6 2.4E-07 5.3E-12 97.4 11.8 76 135-217 7-86 (654)
168 COG0653 SecA Preprotein transl 98.6 3E-06 6.4E-11 87.6 18.6 126 142-280 79-211 (822)
169 PF13604 AAA_30: AAA domain; P 98.6 2.4E-07 5.2E-12 81.8 9.2 121 144-308 2-129 (196)
170 COG0553 HepA Superfamily II DN 98.6 2E-06 4.2E-11 93.8 17.1 134 142-283 337-486 (866)
171 PF13086 AAA_11: AAA domain; P 98.5 2.2E-07 4.8E-12 84.4 7.8 72 144-216 2-75 (236)
172 PF02562 PhoH: PhoH-like prote 98.5 8.2E-07 1.8E-11 77.9 9.7 141 142-308 3-154 (205)
173 KOG1803 DNA helicase [Replicat 98.4 8.7E-07 1.9E-11 87.2 9.0 65 142-214 184-249 (649)
174 PF13872 AAA_34: P-loop contai 98.4 1.6E-05 3.4E-10 73.2 14.8 172 126-317 26-227 (303)
175 PRK10536 hypothetical protein; 98.3 3.5E-05 7.5E-10 69.7 15.3 145 138-307 54-210 (262)
176 TIGR01447 recD exodeoxyribonuc 98.3 1.2E-05 2.5E-10 82.5 13.7 140 146-307 148-293 (586)
177 PRK10875 recD exonuclease V su 98.3 9.8E-06 2.1E-10 83.2 12.8 140 145-307 154-299 (615)
178 KOG1802 RNA helicase nonsense 98.2 8.6E-06 1.9E-10 80.8 11.2 77 135-218 402-478 (935)
179 PF09848 DUF2075: Uncharacteri 98.2 8E-06 1.7E-10 79.1 10.0 108 160-296 3-117 (352)
180 TIGR01448 recD_rel helicase, p 98.2 2.7E-05 5.9E-10 82.1 14.6 126 141-308 321-451 (720)
181 TIGR00376 DNA helicase, putati 98.2 1.9E-05 4E-10 82.1 13.0 67 142-216 156-223 (637)
182 PF12340 DUF3638: Protein of u 98.1 5.9E-05 1.3E-09 66.9 13.4 152 122-283 4-186 (229)
183 COG3587 Restriction endonuclea 98.1 1.7E-05 3.8E-10 81.0 10.9 146 160-315 76-247 (985)
184 KOG1015 Transcription regulato 98.1 3.6E-05 7.8E-10 79.3 12.2 145 158-310 696-859 (1567)
185 PF00271 Helicase_C: Helicase 98.0 1.4E-05 2.9E-10 59.2 5.6 43 392-434 1-43 (78)
186 PF13245 AAA_19: Part of AAA d 98.0 3.3E-05 7.2E-10 56.6 7.5 60 151-214 2-62 (76)
187 TIGR02768 TraA_Ti Ti-type conj 97.9 0.00016 3.5E-09 76.6 13.8 122 142-307 351-474 (744)
188 PRK13889 conjugal transfer rel 97.9 0.00015 3.3E-09 78.0 13.5 124 142-309 345-470 (988)
189 COG1875 NYN ribonuclease and A 97.9 9.3E-05 2E-09 69.1 9.9 143 139-307 224-385 (436)
190 PF00448 SRP54: SRP54-type pro 97.9 0.0001 2.2E-09 64.9 9.8 131 160-322 3-137 (196)
191 PRK04296 thymidine kinase; Pro 97.9 3.4E-05 7.4E-10 67.8 6.6 109 158-308 2-113 (190)
192 PRK12723 flagellar biosynthesi 97.9 0.00036 7.7E-09 67.8 14.0 130 159-321 175-309 (388)
193 KOG1805 DNA replication helica 97.8 8.7E-05 1.9E-09 77.0 9.8 134 127-282 657-809 (1100)
194 PRK14974 cell division protein 97.8 0.00035 7.6E-09 66.5 12.2 55 268-322 221-276 (336)
195 PRK11889 flhF flagellar biosyn 97.8 0.00061 1.3E-08 65.5 13.5 155 159-362 242-402 (436)
196 PRK14722 flhF flagellar biosyn 97.7 0.00046 1E-08 66.5 12.8 167 157-363 136-307 (374)
197 PF13401 AAA_22: AAA domain; P 97.7 4.2E-05 9.1E-10 62.7 4.4 19 157-175 3-21 (131)
198 smart00490 HELICc helicase sup 97.7 9E-05 1.9E-09 54.9 5.8 46 389-434 2-47 (82)
199 PRK13826 Dtr system oriT relax 97.7 0.00099 2.2E-08 72.4 15.6 124 142-309 380-505 (1102)
200 cd00009 AAA The AAA+ (ATPases 97.6 0.0011 2.3E-08 54.9 11.2 17 158-174 19-35 (151)
201 TIGR02760 TraI_TIGR conjugativ 97.5 0.0086 1.9E-07 69.9 21.4 237 143-423 429-685 (1960)
202 PF00580 UvrD-helicase: UvrD/R 97.5 0.00027 5.9E-09 67.2 8.0 123 144-279 1-125 (315)
203 COG1419 FlhF Flagellar GTP-bin 97.5 0.0029 6.3E-08 60.7 14.4 132 158-323 203-337 (407)
204 PRK05703 flhF flagellar biosyn 97.5 0.0019 4.1E-08 63.9 13.6 129 158-321 221-354 (424)
205 KOG1132 Helicase of the DEAD s 97.5 0.00068 1.5E-08 70.0 10.5 39 142-180 20-62 (945)
206 PF05970 PIF1: PIF1-like helic 97.5 0.00027 5.9E-09 68.7 7.3 59 144-210 2-66 (364)
207 PRK08181 transposase; Validate 97.5 0.0015 3.2E-08 60.4 11.7 22 154-175 102-123 (269)
208 PRK06526 transposase; Provisio 97.5 0.00079 1.7E-08 61.8 9.8 23 153-175 93-115 (254)
209 smart00382 AAA ATPases associa 97.4 0.00044 9.6E-09 56.8 7.2 41 158-206 2-42 (148)
210 COG2805 PilT Tfp pilus assembl 97.4 0.0027 5.9E-08 58.1 11.7 52 115-186 100-152 (353)
211 PF14617 CMS1: U3-containing 9 97.3 0.00068 1.5E-08 61.4 6.7 86 193-280 125-212 (252)
212 COG3421 Uncharacterized protei 97.3 0.00073 1.6E-08 66.9 7.0 143 163-313 2-168 (812)
213 PRK12726 flagellar biosynthesi 97.2 0.0052 1.1E-07 59.0 12.2 158 158-362 206-367 (407)
214 PRK05642 DNA replication initi 97.2 0.00084 1.8E-08 61.0 6.6 44 268-311 96-140 (234)
215 PRK06731 flhF flagellar biosyn 97.2 0.0098 2.1E-07 55.0 13.2 157 157-362 74-236 (270)
216 TIGR01425 SRP54_euk signal rec 97.1 0.0073 1.6E-07 59.3 12.7 132 160-322 102-236 (429)
217 PRK12727 flagellar biosynthesi 97.1 0.014 3E-07 58.5 14.5 157 157-362 349-509 (559)
218 PRK14723 flhF flagellar biosyn 97.1 0.0083 1.8E-07 62.9 13.4 130 158-322 185-318 (767)
219 KOG0298 DEAD box-containing he 97.1 0.0013 2.8E-08 70.4 7.3 152 157-314 373-554 (1394)
220 PHA02533 17 large terminase pr 97.0 0.0066 1.4E-07 61.8 11.9 150 142-310 58-210 (534)
221 PRK12724 flagellar biosynthesi 97.0 0.012 2.6E-07 57.4 12.9 126 159-321 224-356 (432)
222 PRK08116 hypothetical protein; 97.0 0.024 5.3E-07 52.5 14.6 49 267-315 176-226 (268)
223 PRK06893 DNA replication initi 97.0 0.0019 4.1E-08 58.6 6.6 47 267-313 89-137 (229)
224 PRK14712 conjugal transfer nic 97.0 0.0072 1.6E-07 68.1 12.2 62 143-210 835-900 (1623)
225 PRK08084 DNA replication initi 97.0 0.0021 4.5E-08 58.5 6.8 17 158-174 45-61 (235)
226 PRK07952 DNA replication prote 96.9 0.018 3.9E-07 52.4 12.7 48 267-314 160-209 (244)
227 PRK08727 hypothetical protein; 96.9 0.0049 1.1E-07 56.0 9.1 47 268-314 92-140 (233)
228 KOG1001 Helicase-like transcri 96.9 0.0051 1.1E-07 63.8 10.1 140 159-312 153-294 (674)
229 PRK00771 signal recognition pa 96.9 0.02 4.4E-07 56.7 13.7 53 270-322 176-229 (437)
230 PRK06835 DNA replication prote 96.9 0.0095 2.1E-07 56.8 11.1 48 267-314 244-293 (329)
231 PRK13709 conjugal transfer nic 96.9 0.01 2.3E-07 67.7 13.0 65 142-210 966-1032(1747)
232 KOG0383 Predicted helicase [Ge 96.9 7.2E-05 1.6E-09 76.5 -3.6 74 351-432 615-691 (696)
233 PRK06921 hypothetical protein; 96.9 0.016 3.4E-07 53.8 12.0 27 157-184 116-142 (266)
234 TIGR00064 ftsY signal recognit 96.9 0.02 4.4E-07 53.1 12.8 55 268-322 153-214 (272)
235 PRK05707 DNA polymerase III su 96.8 0.0077 1.7E-07 57.5 9.8 32 144-175 4-39 (328)
236 PF03354 Terminase_1: Phage Te 96.8 0.0069 1.5E-07 61.3 9.9 153 146-310 1-164 (477)
237 COG1444 Predicted P-loop ATPas 96.8 0.012 2.7E-07 61.0 11.6 157 127-310 198-356 (758)
238 PRK10867 signal recognition pa 96.8 0.024 5.1E-07 56.1 13.1 16 160-175 102-117 (433)
239 PRK07003 DNA polymerase III su 96.8 0.012 2.7E-07 61.2 11.4 39 268-307 118-156 (830)
240 PRK07994 DNA polymerase III su 96.8 0.0078 1.7E-07 62.2 9.9 38 268-306 118-155 (647)
241 PRK11054 helD DNA helicase IV; 96.8 0.012 2.6E-07 61.8 11.4 72 141-218 194-265 (684)
242 PHA03333 putative ATPase subun 96.8 0.051 1.1E-06 55.8 15.3 70 143-219 169-241 (752)
243 PF05127 Helicase_RecD: Helica 96.7 0.001 2.2E-08 57.1 2.8 123 162-310 1-123 (177)
244 PF05621 TniB: Bacterial TniB 96.7 0.0087 1.9E-07 55.5 9.0 116 159-303 62-181 (302)
245 PTZ00112 origin recognition co 96.7 0.028 6.1E-07 59.3 13.5 22 161-183 784-805 (1164)
246 cd01124 KaiC KaiC is a circadi 96.7 0.014 3.1E-07 50.8 10.1 49 161-218 2-50 (187)
247 KOG1016 Predicted DNA helicase 96.7 0.023 5E-07 58.2 12.3 183 125-316 244-479 (1387)
248 PRK08769 DNA polymerase III su 96.7 0.023 5E-07 53.9 11.8 141 142-309 3-152 (319)
249 PRK12377 putative replication 96.7 0.019 4.2E-07 52.4 11.0 27 158-185 101-127 (248)
250 PRK07764 DNA polymerase III su 96.7 0.019 4.1E-07 61.4 12.3 40 267-307 118-157 (824)
251 TIGR03420 DnaA_homol_Hda DnaA 96.7 0.01 2.2E-07 53.5 9.1 19 157-175 37-55 (226)
252 TIGR00959 ffh signal recogniti 96.7 0.034 7.4E-07 54.9 13.2 16 160-175 101-116 (428)
253 PRK08903 DnaA regulatory inact 96.7 0.0086 1.9E-07 54.2 8.5 43 269-312 90-133 (227)
254 TIGR02760 TraI_TIGR conjugativ 96.7 0.013 2.9E-07 68.4 11.8 63 142-210 1018-1084(1960)
255 cd01120 RecA-like_NTPases RecA 96.7 0.015 3.1E-07 49.2 9.4 35 161-203 2-36 (165)
256 PHA02544 44 clamp loader, smal 96.6 0.016 3.4E-07 55.3 10.6 40 269-308 100-139 (316)
257 PRK10416 signal recognition pa 96.6 0.054 1.2E-06 51.5 13.9 55 268-322 195-256 (318)
258 TIGR00596 rad1 DNA repair prot 96.6 0.015 3.3E-07 61.8 10.8 87 242-328 4-96 (814)
259 PRK11331 5-methylcytosine-spec 96.6 0.0074 1.6E-07 59.3 7.8 33 143-175 179-211 (459)
260 COG5008 PilU Tfp pilus assembl 96.5 0.057 1.2E-06 48.8 12.3 21 161-182 130-150 (375)
261 PF13173 AAA_14: AAA domain 96.5 0.031 6.7E-07 45.5 10.3 38 269-309 61-98 (128)
262 COG4962 CpaF Flp pilus assembl 96.5 0.011 2.4E-07 55.5 8.3 62 137-207 151-213 (355)
263 PRK14960 DNA polymerase III su 96.5 0.019 4E-07 59.1 10.4 39 268-307 117-155 (702)
264 TIGR01075 uvrD DNA helicase II 96.5 0.013 2.9E-07 62.4 9.8 72 142-219 3-74 (715)
265 PRK14949 DNA polymerase III su 96.5 0.028 6.1E-07 59.7 11.8 41 268-310 118-158 (944)
266 PTZ00293 thymidine kinase; Pro 96.5 0.017 3.7E-07 51.0 8.7 40 157-204 3-42 (211)
267 PF00308 Bac_DnaA: Bacterial d 96.5 0.0027 5.9E-08 57.0 3.8 49 267-315 95-145 (219)
268 PRK06995 flhF flagellar biosyn 96.5 0.036 7.9E-07 55.4 12.0 18 158-175 256-273 (484)
269 PRK14087 dnaA chromosomal repl 96.4 0.03 6.5E-07 56.0 11.3 48 267-314 204-253 (450)
270 PRK14956 DNA polymerase III su 96.4 0.0086 1.9E-07 59.5 7.3 40 268-309 120-159 (484)
271 PLN03025 replication factor C 96.4 0.052 1.1E-06 51.9 12.5 39 268-307 98-136 (319)
272 PRK12422 chromosomal replicati 96.4 0.022 4.8E-07 56.8 10.2 51 268-318 201-253 (445)
273 COG2804 PulE Type II secretory 96.4 0.022 4.8E-07 56.3 9.9 40 145-185 243-284 (500)
274 PF13177 DNA_pol3_delta2: DNA 96.4 0.058 1.3E-06 45.9 11.5 42 268-310 101-142 (162)
275 COG3973 Superfamily I DNA and 96.4 0.018 4E-07 57.6 9.3 89 130-220 192-286 (747)
276 PRK12323 DNA polymerase III su 96.4 0.02 4.2E-07 58.8 9.7 42 267-309 122-163 (700)
277 PRK06645 DNA polymerase III su 96.4 0.02 4.3E-07 57.8 9.7 17 160-176 45-61 (507)
278 PRK08533 flagellar accessory p 96.4 0.036 7.9E-07 50.2 10.5 54 156-218 22-75 (230)
279 COG1484 DnaC DNA replication p 96.4 0.025 5.4E-07 52.0 9.4 47 157-212 104-150 (254)
280 PRK11773 uvrD DNA-dependent he 96.4 0.02 4.2E-07 61.1 10.0 71 143-219 9-79 (721)
281 COG1435 Tdk Thymidine kinase [ 96.3 0.0076 1.7E-07 51.9 5.5 91 158-281 4-94 (201)
282 COG2256 MGS1 ATPase related to 96.3 0.018 4E-07 54.9 8.5 16 160-175 50-65 (436)
283 PRK14964 DNA polymerase III su 96.3 0.038 8.3E-07 55.4 11.2 40 267-307 114-153 (491)
284 PRK12402 replication factor C 96.3 0.024 5.2E-07 54.5 9.6 41 267-308 123-163 (337)
285 PHA00729 NTP-binding motif con 96.3 0.027 5.9E-07 50.3 8.9 74 247-320 60-138 (226)
286 PRK09183 transposase/IS protei 96.3 0.041 8.9E-07 50.8 10.4 21 155-175 99-119 (259)
287 PF05496 RuvB_N: Holliday junc 96.3 0.013 2.9E-07 51.9 6.8 16 160-175 52-67 (233)
288 PRK07471 DNA polymerase III su 96.2 0.044 9.6E-07 53.1 11.0 136 160-310 43-181 (365)
289 PRK10919 ATP-dependent DNA hel 96.2 0.013 2.8E-07 61.9 7.8 70 143-218 2-71 (672)
290 PRK14873 primosome assembly pr 96.2 0.028 6E-07 58.8 10.0 76 350-432 171-248 (665)
291 PRK14958 DNA polymerase III su 96.2 0.022 4.7E-07 57.8 9.1 39 268-307 118-156 (509)
292 PRK13833 conjugal transfer pro 96.2 0.023 4.9E-07 54.0 8.5 64 135-206 122-186 (323)
293 PRK00149 dnaA chromosomal repl 96.2 0.026 5.6E-07 56.7 9.5 47 269-315 211-259 (450)
294 PRK14721 flhF flagellar biosyn 96.2 0.11 2.4E-06 51.1 13.5 83 267-362 267-351 (420)
295 cd00561 CobA_CobO_BtuR ATP:cor 96.2 0.16 3.5E-06 42.8 12.7 54 266-319 92-147 (159)
296 PRK14952 DNA polymerase III su 96.2 0.036 7.9E-07 56.9 10.4 40 267-307 116-155 (584)
297 PRK05986 cob(I)alamin adenolsy 96.2 0.027 5.9E-07 48.8 8.0 146 157-320 21-168 (191)
298 TIGR00708 cobA cob(I)alamin ad 96.2 0.05 1.1E-06 46.5 9.5 53 267-319 95-149 (173)
299 PRK09112 DNA polymerase III su 96.1 0.048 1E-06 52.6 10.6 41 267-308 139-179 (351)
300 PRK14088 dnaA chromosomal repl 96.1 0.033 7.2E-07 55.6 9.8 51 269-319 194-246 (440)
301 PRK14965 DNA polymerase III su 96.1 0.065 1.4E-06 55.4 12.1 40 267-307 117-156 (576)
302 TIGR02881 spore_V_K stage V sp 96.1 0.025 5.5E-07 52.3 8.4 17 159-175 43-59 (261)
303 COG2909 MalT ATP-dependent tra 96.1 0.026 5.7E-07 58.8 9.0 132 158-311 37-171 (894)
304 PRK09111 DNA polymerase III su 96.1 0.04 8.7E-07 56.9 10.1 40 267-307 130-169 (598)
305 PRK08691 DNA polymerase III su 96.0 0.028 6E-07 58.3 8.8 40 267-307 117-156 (709)
306 PRK14957 DNA polymerase III su 96.0 0.047 1E-06 55.6 10.2 40 267-307 117-156 (546)
307 PRK14961 DNA polymerase III su 96.0 0.036 7.9E-07 53.9 9.1 40 267-307 117-156 (363)
308 PRK06964 DNA polymerase III su 96.0 0.068 1.5E-06 51.2 10.7 42 267-309 130-171 (342)
309 TIGR02785 addA_Gpos recombinat 96.0 0.036 7.7E-07 62.6 10.2 122 144-279 2-125 (1232)
310 PRK13342 recombination factor 96.0 0.078 1.7E-06 52.6 11.6 16 160-175 38-53 (413)
311 COG1198 PriA Primosomal protei 96.0 0.024 5.2E-07 59.3 8.1 79 347-432 225-304 (730)
312 KOG0989 Replication factor C, 96.0 0.013 2.9E-07 53.8 5.5 45 265-310 125-169 (346)
313 TIGR01547 phage_term_2 phage t 96.0 0.032 6.8E-07 55.1 8.7 145 160-322 3-152 (396)
314 CHL00181 cbbX CbbX; Provisiona 95.9 0.049 1.1E-06 51.1 9.4 18 158-175 59-76 (287)
315 PRK06871 DNA polymerase III su 95.9 0.099 2.2E-06 49.7 11.5 41 267-308 105-145 (325)
316 TIGR03015 pepcterm_ATPase puta 95.9 0.028 6E-07 52.2 7.8 32 144-175 24-60 (269)
317 TIGR01073 pcrA ATP-dependent D 95.9 0.041 8.9E-07 58.8 9.9 71 143-219 4-74 (726)
318 TIGR03499 FlhF flagellar biosy 95.9 0.036 7.7E-07 51.9 8.3 18 158-175 194-211 (282)
319 TIGR00595 priA primosomal prot 95.9 0.048 1E-06 55.4 9.8 59 374-432 25-84 (505)
320 TIGR01074 rep ATP-dependent DN 95.9 0.038 8.2E-07 58.5 9.3 69 144-218 2-70 (664)
321 PRK00411 cdc6 cell division co 95.9 0.06 1.3E-06 53.1 10.2 24 159-183 56-79 (394)
322 PRK06620 hypothetical protein; 95.9 0.023 5E-07 50.8 6.5 17 159-175 45-61 (214)
323 PRK14963 DNA polymerase III su 95.9 0.066 1.4E-06 54.3 10.5 15 161-175 39-53 (504)
324 TIGR00362 DnaA chromosomal rep 95.9 0.047 1E-06 54.1 9.4 48 269-316 199-248 (405)
325 PRK13894 conjugal transfer ATP 95.9 0.039 8.6E-07 52.4 8.4 66 133-206 124-190 (319)
326 cd03115 SRP The signal recogni 95.8 0.19 4.1E-06 43.2 12.1 55 268-322 81-136 (173)
327 PRK04195 replication factor C 95.8 0.07 1.5E-06 54.1 10.8 18 158-175 39-56 (482)
328 KOG0991 Replication factor C, 95.8 0.015 3.3E-07 51.3 5.0 42 268-310 112-153 (333)
329 PRK07940 DNA polymerase III su 95.8 0.14 3E-06 50.3 12.1 41 267-309 115-155 (394)
330 PRK14086 dnaA chromosomal repl 95.8 0.031 6.6E-07 57.3 7.6 49 267-315 375-425 (617)
331 COG3972 Superfamily I DNA and 95.7 0.034 7.4E-07 54.3 7.5 130 145-281 164-307 (660)
332 COG1110 Reverse gyrase [DNA re 95.7 0.022 4.7E-07 60.4 6.5 61 375-435 126-192 (1187)
333 PRK14969 DNA polymerase III su 95.7 0.051 1.1E-06 55.5 9.2 40 267-307 117-156 (527)
334 TIGR02880 cbbX_cfxQ probable R 95.7 0.043 9.4E-07 51.4 8.1 18 158-175 58-75 (284)
335 COG0470 HolB ATPase involved i 95.7 0.077 1.7E-06 50.6 10.1 41 267-308 107-147 (325)
336 PRK07993 DNA polymerase III su 95.7 0.088 1.9E-06 50.4 10.2 136 144-308 3-146 (334)
337 PRK05580 primosome assembly pr 95.7 0.065 1.4E-06 56.6 10.1 58 375-432 191-249 (679)
338 PRK08699 DNA polymerase III su 95.7 0.12 2.7E-06 49.3 11.1 41 267-308 111-151 (325)
339 PF00004 AAA: ATPase family as 95.7 0.11 2.4E-06 42.0 9.6 14 161-174 1-14 (132)
340 TIGR02525 plasmid_TraJ plasmid 95.7 0.092 2E-06 51.0 10.3 26 158-184 149-174 (372)
341 PRK11823 DNA repair protein Ra 95.7 0.059 1.3E-06 53.9 9.2 54 157-219 79-132 (446)
342 PRK06090 DNA polymerase III su 95.7 0.14 3E-06 48.6 11.1 135 144-309 4-147 (319)
343 PHA03368 DNA packaging termina 95.6 0.084 1.8E-06 54.1 10.1 133 157-309 253-389 (738)
344 PRK14955 DNA polymerase III su 95.6 0.057 1.2E-06 53.2 9.0 42 266-309 124-165 (397)
345 PRK14959 DNA polymerase III su 95.6 0.062 1.3E-06 55.3 9.3 17 160-176 40-56 (624)
346 PRK05563 DNA polymerase III su 95.6 0.06 1.3E-06 55.4 9.3 42 267-310 117-158 (559)
347 KOG0733 Nuclear AAA ATPase (VC 95.6 0.03 6.6E-07 56.2 6.7 54 119-175 506-562 (802)
348 PRK14951 DNA polymerase III su 95.6 0.035 7.7E-07 57.3 7.5 40 267-307 122-161 (618)
349 TIGR02782 TrbB_P P-type conjug 95.6 0.056 1.2E-06 51.0 8.2 65 134-206 109-174 (299)
350 TIGR02928 orc1/cdc6 family rep 95.6 0.1 2.2E-06 50.8 10.4 24 159-183 41-64 (365)
351 PRK13900 type IV secretion sys 95.6 0.19 4.2E-06 48.1 11.9 44 155-207 157-200 (332)
352 PRK13851 type IV secretion sys 95.5 0.023 4.9E-07 54.5 5.5 45 154-207 158-202 (344)
353 PF03969 AFG1_ATPase: AFG1-lik 95.5 0.22 4.8E-06 48.2 12.2 110 158-314 62-172 (362)
354 PF05729 NACHT: NACHT domain 95.5 0.15 3.3E-06 43.0 10.1 16 160-175 2-17 (166)
355 cd01121 Sms Sms (bacterial rad 95.5 0.075 1.6E-06 51.7 8.9 91 157-282 81-171 (372)
356 PRK10436 hypothetical protein; 95.5 0.067 1.5E-06 53.5 8.7 38 145-183 203-242 (462)
357 PRK10917 ATP-dependent DNA hel 95.5 0.067 1.5E-06 56.6 9.2 62 374-435 310-375 (681)
358 PRK13341 recombination factor 95.4 0.12 2.6E-06 54.7 10.8 16 160-175 54-69 (725)
359 COG0552 FtsY Signal recognitio 95.4 0.41 9E-06 45.0 13.0 131 160-322 141-281 (340)
360 PF01695 IstB_IS21: IstB-like 95.4 0.037 7.9E-07 47.9 5.8 46 155-209 44-89 (178)
361 PRK08939 primosomal protein Dn 95.3 0.16 3.4E-06 48.1 10.4 18 158-175 156-173 (306)
362 PF01637 Arch_ATPase: Archaeal 95.3 0.046 1E-06 49.2 6.7 56 251-310 104-165 (234)
363 COG1222 RPT1 ATP-dependent 26S 95.3 0.13 2.7E-06 48.7 9.3 18 158-175 185-202 (406)
364 PF05876 Terminase_GpA: Phage 95.3 0.056 1.2E-06 55.6 7.8 124 143-282 16-147 (557)
365 TIGR03881 KaiC_arch_4 KaiC dom 95.3 0.17 3.6E-06 45.7 10.2 53 157-218 19-71 (229)
366 PRK14962 DNA polymerase III su 95.2 0.11 2.3E-06 52.3 9.4 15 161-175 39-53 (472)
367 COG0593 DnaA ATPase involved i 95.2 0.063 1.4E-06 52.2 7.4 48 269-316 175-224 (408)
368 cd01122 GP4d_helicase GP4d_hel 95.2 0.14 2.9E-06 47.7 9.6 51 156-214 28-78 (271)
369 PRK05896 DNA polymerase III su 95.2 0.058 1.3E-06 55.3 7.4 39 268-307 118-156 (605)
370 TIGR02538 type_IV_pilB type IV 95.2 0.081 1.7E-06 54.6 8.5 44 136-183 295-340 (564)
371 PRK00440 rfc replication facto 95.0 0.56 1.2E-05 44.6 13.4 38 269-307 102-139 (319)
372 cd01129 PulE-GspE PulE/GspE Th 95.0 0.18 3.9E-06 46.7 9.5 38 145-183 65-104 (264)
373 PRK11747 dinG ATP-dependent DN 95.0 0.35 7.5E-06 51.4 12.8 73 351-434 518-595 (697)
374 TIGR02533 type_II_gspE general 94.9 0.11 2.3E-06 52.6 8.5 44 136-183 221-266 (486)
375 COG1474 CDC6 Cdc6-related prot 94.9 0.32 7E-06 47.2 11.4 25 159-184 43-67 (366)
376 TIGR02524 dot_icm_DotB Dot/Icm 94.9 0.044 9.6E-07 53.0 5.5 26 157-183 133-158 (358)
377 PF03796 DnaB_C: DnaB-like hel 94.9 0.11 2.3E-06 48.0 7.8 138 158-308 19-178 (259)
378 cd01130 VirB11-like_ATPase Typ 94.9 0.066 1.4E-06 46.7 6.1 31 144-174 10-41 (186)
379 PRK14948 DNA polymerase III su 94.9 0.12 2.5E-06 53.9 8.7 38 267-305 119-156 (620)
380 TIGR00604 rad3 DNA repair heli 94.9 0.57 1.2E-05 49.9 14.2 74 352-431 506-589 (705)
381 PRK07399 DNA polymerase III su 94.8 0.3 6.5E-06 46.4 10.7 55 252-309 108-162 (314)
382 COG1132 MdlB ABC-type multidru 94.8 0.15 3.3E-06 52.8 9.5 39 267-305 481-519 (567)
383 PRK06067 flagellar accessory p 94.7 0.27 5.9E-06 44.6 10.0 53 157-218 24-76 (234)
384 cd00984 DnaB_C DnaB helicase C 94.7 0.29 6.4E-06 44.5 10.2 38 157-201 12-49 (242)
385 PRK09087 hypothetical protein; 94.7 0.13 2.7E-06 46.5 7.5 42 271-314 89-131 (226)
386 PRK08451 DNA polymerase III su 94.7 0.2 4.4E-06 50.8 9.7 40 267-307 115-154 (535)
387 PRK14950 DNA polymerase III su 94.6 0.1 2.2E-06 54.2 7.6 41 267-309 118-158 (585)
388 TIGR02868 CydC thiol reductant 94.6 0.11 2.4E-06 53.4 7.9 25 157-183 360-384 (529)
389 COG1485 Predicted ATPase [Gene 94.6 0.77 1.7E-05 43.5 12.5 109 159-314 66-175 (367)
390 TIGR00678 holB DNA polymerase 94.6 0.55 1.2E-05 40.9 11.2 38 267-305 94-131 (188)
391 TIGR00643 recG ATP-dependent D 94.5 0.14 3.1E-06 53.7 8.5 62 374-435 284-349 (630)
392 PHA03372 DNA packaging termina 94.5 0.7 1.5E-05 47.0 12.7 129 157-309 201-336 (668)
393 PRK06904 replicative DNA helic 94.5 0.55 1.2E-05 47.3 12.3 113 158-282 221-347 (472)
394 PF13555 AAA_29: P-loop contai 94.5 0.053 1.1E-06 37.7 3.5 26 158-185 23-48 (62)
395 KOG1133 Helicase of the DEAD s 94.4 0.059 1.3E-06 54.8 5.1 42 142-183 14-59 (821)
396 KOG0742 AAA+-type ATPase [Post 94.4 0.039 8.6E-07 52.7 3.6 17 159-175 385-401 (630)
397 TIGR03877 thermo_KaiC_1 KaiC d 94.4 0.091 2E-06 47.8 6.0 53 157-218 20-72 (237)
398 COG2874 FlaH Predicted ATPases 94.4 0.98 2.1E-05 39.8 11.7 73 255-328 110-188 (235)
399 TIGR02655 circ_KaiC circadian 94.3 0.14 3.1E-06 51.8 7.7 60 150-218 250-314 (484)
400 PRK13764 ATPase; Provisional 94.3 0.12 2.6E-06 53.1 7.0 26 157-183 256-281 (602)
401 KOG0741 AAA+-type ATPase [Post 94.3 0.15 3.2E-06 50.6 7.2 44 268-311 597-650 (744)
402 PRK14701 reverse gyrase; Provi 94.2 0.15 3.2E-06 58.7 8.2 62 374-435 122-189 (1638)
403 PF00437 T2SE: Type II/IV secr 94.1 0.094 2E-06 48.8 5.6 43 156-206 125-167 (270)
404 TIGR03689 pup_AAA proteasome A 94.1 0.25 5.5E-06 49.9 8.9 18 158-175 216-233 (512)
405 PRK11034 clpA ATP-dependent Cl 94.1 0.46 1E-05 50.6 11.2 18 158-175 207-224 (758)
406 COG0541 Ffh Signal recognition 94.1 0.77 1.7E-05 44.8 11.6 132 160-322 102-236 (451)
407 PF01443 Viral_helicase1: Vira 94.1 0.073 1.6E-06 48.1 4.7 14 161-174 1-14 (234)
408 PF12846 AAA_10: AAA-like doma 94.1 0.072 1.6E-06 50.1 4.8 43 158-208 1-43 (304)
409 PF02572 CobA_CobO_BtuR: ATP:c 94.0 0.49 1.1E-05 40.5 9.2 53 266-318 93-147 (172)
410 PRK14954 DNA polymerase III su 94.0 0.19 4.1E-06 52.2 8.0 41 266-307 124-164 (620)
411 cd03239 ABC_SMC_head The struc 94.0 0.067 1.5E-06 46.3 4.0 43 267-309 114-157 (178)
412 KOG1513 Nuclear helicase MOP-3 94.0 0.093 2E-06 54.2 5.4 151 143-310 264-454 (1300)
413 PHA00350 putative assembly pro 94.0 1.6 3.6E-05 42.6 13.8 17 161-177 4-20 (399)
414 PRK05416 glmZ(sRNA)-inactivati 93.9 0.82 1.8E-05 42.8 11.4 26 383-409 259-284 (288)
415 TIGR01420 pilT_fam pilus retra 93.9 0.19 4.1E-06 48.5 7.4 18 157-174 121-138 (343)
416 TIGR00635 ruvB Holliday juncti 93.9 0.26 5.7E-06 46.6 8.3 17 159-175 31-47 (305)
417 PRK14953 DNA polymerase III su 93.8 0.58 1.3E-05 47.3 10.9 41 267-309 117-157 (486)
418 COG2109 BtuR ATP:corrinoid ade 93.8 0.53 1.1E-05 40.5 8.9 54 268-321 121-176 (198)
419 COG2255 RuvB Holliday junction 93.8 0.3 6.5E-06 44.8 7.9 16 160-175 54-69 (332)
420 PRK07414 cob(I)yrinic acid a,c 93.8 1.2 2.6E-05 38.2 11.1 52 267-318 113-166 (178)
421 TIGR02788 VirB11 P-type DNA tr 93.8 0.11 2.3E-06 49.4 5.4 20 155-174 141-160 (308)
422 PRK14971 DNA polymerase III su 93.8 0.41 8.9E-06 49.9 10.0 42 266-309 118-159 (614)
423 KOG2028 ATPase related to the 93.8 0.28 6E-06 46.5 7.7 16 160-175 164-179 (554)
424 TIGR02639 ClpA ATP-dependent C 93.8 0.62 1.3E-05 49.9 11.6 17 159-175 204-220 (731)
425 TIGR03346 chaperone_ClpB ATP-d 93.7 0.55 1.2E-05 51.1 11.3 17 159-175 195-211 (852)
426 TIGR03819 heli_sec_ATPase heli 93.7 0.2 4.4E-06 48.1 7.1 63 133-206 154-217 (340)
427 PRK07133 DNA polymerase III su 93.7 0.27 5.9E-06 51.6 8.4 40 267-307 116-155 (725)
428 PRK10865 protein disaggregatio 93.6 0.3 6.5E-06 53.1 9.0 17 159-175 200-216 (857)
429 PF02534 T4SS-DNA_transf: Type 93.6 0.059 1.3E-06 54.5 3.5 50 159-218 45-94 (469)
430 PRK06647 DNA polymerase III su 93.6 0.24 5.1E-06 51.0 7.8 41 267-309 117-157 (563)
431 PRK09354 recA recombinase A; P 93.6 0.29 6.2E-06 46.9 7.8 42 157-206 59-100 (349)
432 PRK05973 replicative DNA helic 93.6 0.28 6.1E-06 44.4 7.4 66 143-218 50-115 (237)
433 TIGR03600 phage_DnaB phage rep 93.5 0.79 1.7E-05 45.6 11.3 38 157-201 193-230 (421)
434 TIGR01243 CDC48 AAA family ATP 93.5 0.44 9.5E-06 51.1 10.0 18 157-174 211-228 (733)
435 PRK05748 replicative DNA helic 93.5 0.72 1.6E-05 46.3 11.0 49 158-214 203-251 (448)
436 PRK07004 replicative DNA helic 93.5 0.46 1E-05 47.8 9.5 25 158-183 213-237 (460)
437 PRK04841 transcriptional regul 93.5 0.64 1.4E-05 51.2 11.5 43 269-311 121-163 (903)
438 COG1219 ClpX ATP-dependent pro 93.4 0.086 1.9E-06 48.9 3.8 27 157-185 96-122 (408)
439 cd01126 TraG_VirD4 The TraG/Tr 93.4 0.043 9.3E-07 53.9 2.0 49 160-218 1-49 (384)
440 TIGR03878 thermo_KaiC_2 KaiC d 93.4 0.18 3.9E-06 46.6 6.0 53 157-217 35-90 (259)
441 TIGR00767 rho transcription te 93.4 0.69 1.5E-05 45.1 10.0 18 157-174 167-184 (415)
442 COG1199 DinG Rad3-related DNA 93.4 0.81 1.7E-05 48.4 11.6 74 352-434 463-538 (654)
443 cd01131 PilT Pilus retraction 93.4 0.13 2.7E-06 45.5 4.7 14 161-174 4-17 (198)
444 TIGR01243 CDC48 AAA family ATP 93.3 0.22 4.7E-06 53.4 7.3 17 159-175 488-504 (733)
445 TIGR00580 mfd transcription-re 93.3 0.3 6.6E-06 53.2 8.4 60 375-434 501-564 (926)
446 cd03221 ABCF_EF-3 ABCF_EF-3 E 93.3 0.45 9.8E-06 39.5 7.8 31 267-297 86-116 (144)
447 PF03237 Terminase_6: Terminas 93.3 0.89 1.9E-05 44.0 11.1 117 162-295 1-123 (384)
448 PRK00080 ruvB Holliday junctio 93.2 0.25 5.4E-06 47.4 6.9 17 159-175 52-68 (328)
449 COG0630 VirB11 Type IV secreto 93.2 0.14 2.9E-06 48.7 4.9 54 144-206 128-182 (312)
450 TIGR00763 lon ATP-dependent pr 93.1 0.57 1.2E-05 50.5 10.1 18 158-175 347-364 (775)
451 TIGR03345 VI_ClpV1 type VI sec 93.1 0.38 8.2E-06 52.2 8.7 32 144-175 188-225 (852)
452 KOG0732 AAA+-type ATPase conta 93.1 0.15 3.3E-06 54.9 5.5 144 120-310 261-414 (1080)
453 KOG0347 RNA helicase [RNA proc 93.0 0.22 4.8E-06 49.5 6.1 52 377-432 266-321 (731)
454 PRK08006 replicative DNA helic 93.0 1.3 2.9E-05 44.6 11.9 114 158-282 224-349 (471)
455 PRK08506 replicative DNA helic 92.9 0.71 1.5E-05 46.6 9.9 48 158-214 192-239 (472)
456 TIGR02012 tigrfam_recA protein 92.9 0.2 4.4E-06 47.5 5.6 39 157-203 54-92 (321)
457 cd00267 ABC_ATPase ABC (ATP-bi 92.9 0.18 4E-06 42.5 4.9 42 268-309 97-138 (157)
458 cd03228 ABCC_MRP_Like The MRP 92.9 0.4 8.7E-06 41.1 7.0 41 267-308 112-152 (171)
459 COG1200 RecG RecG-like helicas 92.8 0.68 1.5E-05 47.6 9.4 64 372-435 309-376 (677)
460 TIGR02397 dnaX_nterm DNA polym 92.8 1.2 2.6E-05 43.1 11.1 39 267-306 115-153 (355)
461 PRK08840 replicative DNA helic 92.7 1.3 2.8E-05 44.6 11.3 25 157-182 216-240 (464)
462 TIGR02858 spore_III_AA stage I 92.7 2.2 4.7E-05 39.6 12.0 32 150-183 100-134 (270)
463 PRK04328 hypothetical protein; 92.6 0.26 5.7E-06 45.2 5.9 53 157-218 22-74 (249)
464 PF06745 KaiC: KaiC; InterPro 92.6 0.27 5.9E-06 44.3 6.0 54 157-218 18-71 (226)
465 PRK13897 type IV secretion sys 92.6 0.084 1.8E-06 54.5 2.9 50 159-218 159-208 (606)
466 PRK09376 rho transcription ter 92.6 1.6 3.4E-05 42.5 11.2 92 81-175 71-186 (416)
467 KOG0058 Peptide exporter, ABC 92.5 0.77 1.7E-05 47.6 9.4 41 267-308 620-660 (716)
468 COG3598 RepA RecA-family ATPas 92.5 1.1 2.3E-05 42.0 9.4 56 146-201 76-134 (402)
469 KOG0730 AAA+-type ATPase [Post 92.5 0.47 1E-05 48.4 7.8 57 116-175 426-485 (693)
470 PRK06305 DNA polymerase III su 92.5 0.59 1.3E-05 46.9 8.6 40 267-307 119-158 (451)
471 TIGR00665 DnaB replicative DNA 92.4 0.99 2.1E-05 45.1 10.2 49 158-214 195-243 (434)
472 PF03668 ATP_bind_2: P-loop AT 92.4 9.1 0.0002 35.5 16.7 27 383-409 256-282 (284)
473 COG4178 ABC-type uncharacteriz 92.4 0.083 1.8E-06 53.8 2.4 37 265-301 529-565 (604)
474 PRK09435 membrane ATPase/prote 92.3 4.5 9.7E-05 38.7 13.9 15 160-174 58-72 (332)
475 PF06733 DEAD_2: DEAD_2; Inte 92.2 0.062 1.3E-06 46.3 1.1 44 240-283 114-159 (174)
476 TIGR02640 gas_vesic_GvpN gas v 92.2 0.32 7E-06 45.0 5.9 27 149-175 12-38 (262)
477 KOG0652 26S proteasome regulat 92.2 0.91 2E-05 41.1 8.3 18 158-175 205-222 (424)
478 COG4626 Phage terminase-like p 92.1 1.3 2.8E-05 44.6 10.2 75 142-221 60-145 (546)
479 CHL00095 clpC Clp protease ATP 92.1 1.5 3.3E-05 47.6 11.8 17 159-175 201-217 (821)
480 TIGR03117 cas_csf4 CRISPR-asso 92.1 2.8 6.1E-05 43.7 13.1 60 373-434 469-532 (636)
481 TIGR00416 sms DNA repair prote 92.1 0.66 1.4E-05 46.5 8.4 53 157-218 93-145 (454)
482 COG1126 GlnQ ABC-type polar am 92.0 0.14 3.1E-06 45.0 3.1 26 156-183 26-51 (240)
483 cd01393 recA_like RecA is a b 92.0 0.67 1.5E-05 41.6 7.8 45 157-203 18-62 (226)
484 PRK08760 replicative DNA helic 92.0 1.1 2.4E-05 45.3 9.8 112 158-282 229-352 (476)
485 PRK08058 DNA polymerase III su 92.0 0.95 2.1E-05 43.4 9.1 41 267-308 108-148 (329)
486 cd03247 ABCC_cytochrome_bd The 91.9 0.83 1.8E-05 39.4 7.9 41 267-308 114-154 (178)
487 TIGR00614 recQ_fam ATP-depende 91.9 0.62 1.3E-05 47.1 8.1 58 375-432 52-109 (470)
488 TIGR03345 VI_ClpV1 type VI sec 91.9 0.7 1.5E-05 50.2 8.8 15 161-175 599-613 (852)
489 TIGR01054 rgy reverse gyrase. 91.9 0.44 9.6E-06 53.4 7.5 60 374-433 121-187 (1171)
490 cd03215 ABC_Carb_Monos_II This 91.8 0.5 1.1E-05 41.0 6.4 45 266-310 119-163 (182)
491 cd03246 ABCC_Protease_Secretio 91.8 0.45 9.7E-06 40.9 6.0 43 266-308 111-153 (173)
492 cd01128 rho_factor Transcripti 91.7 0.79 1.7E-05 41.9 7.7 19 156-174 14-32 (249)
493 KOG0740 AAA+-type ATPase [Post 91.6 0.57 1.2E-05 45.9 7.0 70 254-324 231-313 (428)
494 PRK10689 transcription-repair 91.6 0.8 1.7E-05 51.2 9.0 60 374-433 649-712 (1147)
495 KOG0734 AAA+-type ATPase conta 91.5 0.9 1.9E-05 45.4 8.1 41 270-310 397-447 (752)
496 PRK13850 type IV secretion sys 91.3 0.16 3.5E-06 53.1 3.2 49 159-217 140-188 (670)
497 TIGR02203 MsbA_lipidA lipid A 91.3 0.21 4.5E-06 51.9 4.0 42 267-308 485-526 (571)
498 PF12775 AAA_7: P-loop contain 91.3 0.14 3E-06 47.6 2.4 19 156-174 31-49 (272)
499 COG1074 RecB ATP-dependent exo 91.3 0.38 8.3E-06 54.0 6.3 58 157-217 15-72 (1139)
500 KOG2543 Origin recognition com 91.2 2.2 4.9E-05 40.9 10.2 45 268-312 114-160 (438)
No 1
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.5e-59 Score=447.83 Aligned_cols=306 Identities=44% Similarity=0.743 Sum_probs=288.9
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHh-cCCCCCCCCCeEEEE
Q 013858 122 SFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVA-QTPVGRGDGPLALVL 200 (435)
Q Consensus 122 ~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~-~~~~~~~~~~~~lil 200 (435)
.|.+++|++.+...++..||..|+|+|.+.||.++.|+|++..+.||||||++|++|++.++.. .....++.+|++||+
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL 171 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVL 171 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEE
Confidence 7999999999999999999999999999999999999999999999999999999999999987 566677789999999
Q ss_pred ccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCc
Q 013858 201 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADR 280 (435)
Q Consensus 201 ~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~ 280 (435)
+||||||.|+.+.+.+++..+ .++..+++||.....|...+.++.+|+|+|||+|.+++..+...|+++.|+|+||||+
T Consensus 172 ~PTRELA~QV~~~~~~~~~~~-~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADr 250 (519)
T KOG0331|consen 172 APTRELAVQVQAEAREFGKSL-RLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADR 250 (519)
T ss_pred cCcHHHHHHHHHHHHHHcCCC-CccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHh
Confidence 999999999999999999887 5889999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHhC-CCCCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCC--CCCCceEEEEEEcChhhHHHHHH
Q 013858 281 MLDMGFEPQIREVMQNL-PDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVS--SPTANVIQILEKVSENEKVDRLL 357 (435)
Q Consensus 281 ~~~~~~~~~i~~i~~~~-~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~i~~~~~~~~~~~k~~~l~ 357 (435)
|+++||.+++++|+..+ ++..|++++|||||..++.++..|+.+|+.+.++... ....++.|....+....|...+.
T Consensus 251 MldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~ 330 (519)
T KOG0331|consen 251 MLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLG 330 (519)
T ss_pred hhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHH
Confidence 99999999999999999 5666899999999999999999999999999988654 56678999999999999999999
Q ss_pred HHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 358 ALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 358 ~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
..|.++. . .+++++||||++++.|++|+..|+..++++..|||+.+|.+|+.+++.|++|+..||||||+.
T Consensus 331 ~lL~~~~-~-----~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVA 401 (519)
T KOG0331|consen 331 KLLEDIS-S-----DSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVA 401 (519)
T ss_pred HHHHHHh-c-----cCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccc
Confidence 9888765 1 567889999999999999999999999999999999999999999999999999999999974
No 2
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=6.9e-55 Score=441.02 Aligned_cols=351 Identities=38% Similarity=0.603 Sum_probs=311.7
Q ss_pred CCCCCccCCCCCCCcccCCCHHHHHHHHHHcCceEEecCCCCCCCCCCCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHH
Q 013858 73 PVPQPVFNNWKPSDRVLRFNPEQIEEVRLRLNVDVTVASGSVPAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAM 152 (435)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i 152 (435)
.++....+.|.+++.+..++.++++.++...++.+.. +..+|.|+.+|+++++++.+++.|..+||..|+++|.++|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai 161 (545)
T PTZ00110 85 NLVPFEKNFYKEHPEVSALSSKEVDEIRKEKEITIIA---GENVPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGW 161 (545)
T ss_pred cccchhhhcccCChhhhcCCHHHHHHHHHhcCcEEec---CCCCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHH
Confidence 3444555677778888899999999999988887632 2378999999999999999999999999999999999999
Q ss_pred HHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECC
Q 013858 153 PVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGG 232 (435)
Q Consensus 153 ~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~ 232 (435)
|.++.|+|+|+++|||||||++|++|++.++..........+|.+|||+|||+||.|+.+.+++|+... .+++..++||
T Consensus 162 p~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~-~i~~~~~~gg 240 (545)
T PTZ00110 162 PIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFGASS-KIRNTVAYGG 240 (545)
T ss_pred HHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHhccc-CccEEEEeCC
Confidence 999999999999999999999999999998876544444557999999999999999999999998765 6899999999
Q ss_pred CCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEcccccH
Q 013858 233 TNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPV 312 (435)
Q Consensus 233 ~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SATl~~ 312 (435)
.....+...+..+++|+|+||++|++++.++...++++++|||||||++++++|..++..++..++++.|+++||||+|.
T Consensus 241 ~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~ 320 (545)
T PTZ00110 241 VPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPK 320 (545)
T ss_pred CCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCH
Confidence 99988888888999999999999999998888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcC-CCeEEEeCCCC-CCCCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHH
Q 013858 313 EIEALAQEYLT-DPVQVKVGKVS-SPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEV 390 (435)
Q Consensus 313 ~~~~~~~~~~~-~~~~i~~~~~~-~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l 390 (435)
.++.+++.++. +++.+.++... .....+.+.+..+....|...+..++.... ....++||||++++.|+.|
T Consensus 321 ~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~-------~~~~k~LIF~~t~~~a~~l 393 (545)
T PTZ00110 321 EVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLKMLLQRIM-------RDGDKILIFVETKKGADFL 393 (545)
T ss_pred HHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHHHHHHHHHhc-------ccCCeEEEEecChHHHHHH
Confidence 99999999886 58887776554 334668888888888888888887776543 1345799999999999999
Q ss_pred HHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 391 SEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 391 ~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
++.|+..++.+..+||++++++|..+++.|++|+.+||||||++
T Consensus 394 ~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~ 437 (545)
T PTZ00110 394 TKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVA 437 (545)
T ss_pred HHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchh
Confidence 99999999999999999999999999999999999999999986
No 3
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.5e-57 Score=407.15 Aligned_cols=300 Identities=39% Similarity=0.598 Sum_probs=285.7
Q ss_pred CCCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEE
Q 013858 119 PIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLAL 198 (435)
Q Consensus 119 ~~~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~l 198 (435)
...+|.++++.+.+.++++..+++.|+++|.++||.++.|+|||+.|+||||||.+|++|+++.++..+ ..+.++
T Consensus 59 ~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p-----~~~~~l 133 (476)
T KOG0330|consen 59 SFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEP-----KLFFAL 133 (476)
T ss_pred hhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCC-----CCceEE
Confidence 445699999999999999999999999999999999999999999999999999999999999999853 358999
Q ss_pred EEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHH-cCCCCCCCceEEEEec
Q 013858 199 VLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQ-QGNTSLSRVSFVILDE 277 (435)
Q Consensus 199 il~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~-~~~~~l~~~~~iIiDE 277 (435)
|++|||+||.|+.+.+..++... ++++..+.||.++..+...+.+.++|+|+|||+|++++. .+.+.+.+++++|+||
T Consensus 134 VLtPtRELA~QI~e~fe~Lg~~i-glr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDE 212 (476)
T KOG0330|consen 134 VLTPTRELAQQIAEQFEALGSGI-GLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDE 212 (476)
T ss_pred EecCcHHHHHHHHHHHHHhcccc-CeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhch
Confidence 99999999999999999999887 799999999999999999999999999999999999998 4578899999999999
Q ss_pred CCcccCCCCHHHHHHHHHhCCCCCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHH
Q 013858 278 ADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLL 357 (435)
Q Consensus 278 ah~~~~~~~~~~i~~i~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~ 357 (435)
|||+++++|...+..|+..+|..+|++++|||++..+..+.+.-+.+|+.+.........+.+.|.|..++...|..+|+
T Consensus 213 ADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~yLV 292 (476)
T KOG0330|consen 213 ADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDTYLV 292 (476)
T ss_pred HHhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccccchhHH
Confidence 99999999999999999999999999999999999999999999999999999998898999999999999999999999
Q ss_pred HHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCC
Q 013858 358 ALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYK 433 (435)
Q Consensus 358 ~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~ 433 (435)
.++.+ ..+..+||||++...+.+++-.|+..|+.+..+||.|+|..|...++.|++|.+.||||||+
T Consensus 293 ~ll~e---------~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDV 359 (476)
T KOG0330|consen 293 YLLNE---------LAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDV 359 (476)
T ss_pred HHHHh---------hcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecch
Confidence 99976 34467999999999999999999999999999999999999999999999999999999997
No 4
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=6.8e-56 Score=414.94 Aligned_cols=339 Identities=40% Similarity=0.674 Sum_probs=314.1
Q ss_pred CCCCCCcccCCCHHHHHHHHHHcCceEEecCCCCCCCCCCCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCC
Q 013858 81 NWKPSDRVLRFNPEQIEEVRLRLNVDVTVASGSVPAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRD 160 (435)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~ 160 (435)
.|.+- .+..+++.+|.-+++.+++..++. .+|.|+.+|++.+||.++++.+...||..|+|+|+++||..+.++|
T Consensus 210 hW~~k-~l~Em~~rdwri~redynis~kg~----~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD 284 (673)
T KOG0333|consen 210 HWSEK-VLAEMTERDWRIFREDYNISIKGG----RLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRD 284 (673)
T ss_pred chhhh-hHHhcCCccceeeecceeeeecCC----CCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCC
Confidence 44443 556778888999999999888865 8999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCCchhHHhHHHHHHHHHhcCCCC----CCCCCeEEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHH
Q 013858 161 LLGCAETGSGKTAAFTIPMIQHCVAQTPVG----RGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIA 236 (435)
Q Consensus 161 vii~~~TGsGKT~~~~~~~l~~~~~~~~~~----~~~~~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~ 236 (435)
+|..++||||||++|++|++.++..-++.. ...||.++|++|||+||+|+.++-.+|++.+ +++++.+.||....
T Consensus 285 ~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~l-g~r~vsvigg~s~E 363 (673)
T KOG0333|consen 285 PIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPL-GIRTVSVIGGLSFE 363 (673)
T ss_pred eeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccc-cceEEEEecccchh
Confidence 999999999999999999999987765433 3468999999999999999999999999887 69999999999999
Q ss_pred HHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCCCHHHHHHHHHhCCC-------------C---
Q 013858 237 EQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPD-------------K--- 300 (435)
Q Consensus 237 ~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~-------------~--- 300 (435)
++.-.+..+|+|+|+|||+|++-+.+..+.+.++.+||+|||++|+++||.+++.+++.++|. .
T Consensus 364 Eq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~ 443 (673)
T KOG0333|consen 364 EQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVR 443 (673)
T ss_pred hhhhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHH
Confidence 998889999999999999999999998899999999999999999999999999999998863 1
Q ss_pred ---------CeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccC
Q 013858 301 ---------HQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSC 371 (435)
Q Consensus 301 ---------~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~ 371 (435)
+|+++||||+|+.++.+++.|+.+|+.+.++....+.+.+.|.+..+...+|...|.+.+.+.
T Consensus 444 ~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~-------- 515 (673)
T KOG0333|consen 444 KNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILESN-------- 515 (673)
T ss_pred hhcccccceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCCCccchheEEEEecchHHHHHHHHHHHhC--------
Confidence 699999999999999999999999999999999999999999999999999999999998764
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 372 HPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 372 ~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
..+++|||+|+++.|+.|++.|.+.|++|..|||+-+|+||+.+++.|++|...||||||+-
T Consensus 516 -~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvA 577 (673)
T KOG0333|consen 516 -FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVA 577 (673)
T ss_pred -CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 23469999999999999999999999999999999999999999999999999999999973
No 5
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=3.4e-56 Score=402.86 Aligned_cols=350 Identities=39% Similarity=0.667 Sum_probs=329.5
Q ss_pred CCCCCCCCccCCCCCCCcccCCCHHHHHHHHHHcCceEEecCCCCCCCCCCCCcccCCCCHHHHHHHHHCCCCCCcHHHH
Q 013858 70 ASHPVPQPVFNNWKPSDRVLRFNPEQIEEVRLRLNVDVTVASGSVPAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQA 149 (435)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~ 149 (435)
..+.+.+|....|.++-.++.+++++.+..|.++.+.|.+. .+|.|+.+|.++.+|..+++.|++.|+..|+|+|.
T Consensus 123 kGi~Y~ePi~T~WkPP~hir~mS~e~~e~vRk~~~I~veGd----~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQv 198 (610)
T KOG0341|consen 123 KGITYEEPIKTAWKPPRHIRKMSEEQRELVRKQLHILVEGD----DIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQV 198 (610)
T ss_pred CCCcccCcchhccCCcHHHHHhhHHHHHHHHHhheEEeeCC----CCCCchhhhhhccCCHHHHHHHHhcCCCCCCceee
Confidence 44567789999999999999999999999999999998865 89999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcC---CCCCCCCCeEEEEccChhhHHHHHHHHHHHhhc-----C
Q 013858 150 QAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQT---PVGRGDGPLALVLAPTRELAQQIEKEVKALSRS-----L 221 (435)
Q Consensus 150 ~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~---~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~-----~ 221 (435)
|.+|.++.|+|.|..+-||||||++|.+|++.+.+.+. ++.++.||..|||||+|+||.|+++.+..+... .
T Consensus 199 QGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~ 278 (610)
T KOG0341|consen 199 QGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGY 278 (610)
T ss_pred cCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999998877653 677888999999999999999999999887754 3
Q ss_pred CCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCCCHHHHHHHHHhCCCCC
Q 013858 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKH 301 (435)
Q Consensus 222 ~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~ 301 (435)
+.++..++.||....++...++.+.+|+|+|||+|.+++.++...|.-++|+.+||||||+++||...++.|...+...+
T Consensus 279 P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QR 358 (610)
T KOG0341|consen 279 PELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQR 358 (610)
T ss_pred hhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhh
Confidence 67899999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred eEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEe
Q 013858 302 QTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFV 381 (435)
Q Consensus 302 q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~ 381 (435)
|+++||||+|..++.+++.-+-.|+.+++++.....-++.|.+.++..+.|+-++++-+.+. .+++||||
T Consensus 359 QTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQevEyVkqEaKiVylLeCLQKT----------~PpVLIFa 428 (610)
T KOG0341|consen 359 QTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEYVKQEAKIVYLLECLQKT----------SPPVLIFA 428 (610)
T ss_pred heeeeeccccHHHHHHHHhhcccceEEecccccccchhHHHHHHHHHhhhhhhhHHHHhccC----------CCceEEEe
Confidence 99999999999999999999999999999999999999999999999999999999988653 34699999
Q ss_pred CchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCC
Q 013858 382 ERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYK 433 (435)
Q Consensus 382 ~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~ 433 (435)
..+..++.+.++|--.|+.++.+|||..|++|...++.|+.|+.+||||||+
T Consensus 429 EkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDV 480 (610)
T KOG0341|consen 429 EKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDV 480 (610)
T ss_pred ccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecc
Confidence 9999999999999999999999999999999999999999999999999996
No 6
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4e-54 Score=401.21 Aligned_cols=345 Identities=40% Similarity=0.649 Sum_probs=323.2
Q ss_pred CCccCCCCCCCcccCCCHHHHHHHHHHcCceEEecCCCCCCCCCCCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHH
Q 013858 76 QPVFNNWKPSDRVLRFNPEQIEEVRLRLNVDVTVASGSVPAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVA 155 (435)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~ 155 (435)
....+.|.+++.+..++..+.-.++..++..|.+. ..|.|+.+|+++++++.|+..+.+..|..|+|+|.+++|..
T Consensus 182 p~~kdfy~e~esI~gl~~~d~~~~r~~Lnlrv~g~----s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalpta 257 (731)
T KOG0339|consen 182 PFNKDFYEEHESIEGLTKMDVIDLRLTLNLRVSGS----SPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTA 257 (731)
T ss_pred ccccccccChhhhhccccccchhhHhhhcceeccC----CCCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccc
Confidence 33456677888899999999999999999998865 78999999999999999999999999999999999999999
Q ss_pred hcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCH
Q 013858 156 LSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNI 235 (435)
Q Consensus 156 ~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~ 235 (435)
+.|++|+.+|-||||||.+|+.|++.++..+.....+++|..||++|||+||.|++.++++|++.. +++++++|||...
T Consensus 258 lsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~y-gl~~v~~ygGgsk 336 (731)
T KOG0339|consen 258 LSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAY-GLRVVAVYGGGSK 336 (731)
T ss_pred cccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhc-cceEEEeecCCcH
Confidence 999999999999999999999999999999888888899999999999999999999999999887 7999999999999
Q ss_pred HHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEcccccHHHH
Q 013858 236 AEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIE 315 (435)
Q Consensus 236 ~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SATl~~~~~ 315 (435)
.+|...+..++.|+|||||+|++++..+..++.+++|+|||||+||+++||..+++.|...+++++|+|+||||++..++
T Consensus 337 ~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe 416 (731)
T KOG0339|consen 337 WEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIE 416 (731)
T ss_pred HHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHH
Confidence 99999999999999999999999999889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCeEEEeCCCCCCCCceEEEEEEc-ChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHH
Q 013858 316 ALAQEYLTDPVQVKVGKVSSPTANVIQILEKV-SENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEAL 394 (435)
Q Consensus 316 ~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~-~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L 394 (435)
.+++.++.+|+.+..+........|.|.+..+ +...|...|++.|... ...+++|||++-+..++.++..|
T Consensus 417 ~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl~~~L~~f--------~S~gkvlifVTKk~~~e~i~a~L 488 (731)
T KOG0339|consen 417 KLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLLRHLVEF--------SSEGKVLIFVTKKADAEEIAANL 488 (731)
T ss_pred HHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHHHHHHHHhhhh--------ccCCcEEEEEeccCCHHHHHHHh
Confidence 99999999999999998888888899987666 5677888888877665 34467999999999999999999
Q ss_pred HhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCC
Q 013858 395 VAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYK 433 (435)
Q Consensus 395 ~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~ 433 (435)
+..+++|..+||++.|.+|.+++..|+.+...|||+||+
T Consensus 489 klk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDv 527 (731)
T KOG0339|consen 489 KLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDV 527 (731)
T ss_pred ccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeH
Confidence 999999999999999999999999999999999999986
No 7
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.9e-53 Score=424.27 Aligned_cols=302 Identities=42% Similarity=0.673 Sum_probs=277.6
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEE
Q 013858 121 ESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 200 (435)
Q Consensus 121 ~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil 200 (435)
..|.++++++.+++.+..+||..|+|+|.++||.++.|+|+++.++||||||++|.+|++..+.... ......+||+
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~---~~~~~~aLil 105 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSV---ERKYVSALIL 105 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhccc---ccCCCceEEE
Confidence 5699999999999999999999999999999999999999999999999999999999999966421 1111129999
Q ss_pred ccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCc
Q 013858 201 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADR 280 (435)
Q Consensus 201 ~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~ 280 (435)
+|||+||.|+++.+..++.+..++++..++||.....+...+..+++|+|+|||+|++++.++.+.+.++.++|+||||+
T Consensus 106 ~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADr 185 (513)
T COG0513 106 APTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADR 185 (513)
T ss_pred CCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhh
Confidence 99999999999999999988646899999999999999988988899999999999999999889999999999999999
Q ss_pred ccCCCCHHHHHHHHHhCCCCCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCC--CCCceEEEEEEcChhh-HHHHHH
Q 013858 281 MLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSS--PTANVIQILEKVSENE-KVDRLL 357 (435)
Q Consensus 281 ~~~~~~~~~i~~i~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~i~~~~~~~~~~~-k~~~l~ 357 (435)
|+++||...+..|+..++++.|+++||||+|..+..+++.++.+|..+.+..... ....+.|.+..+.... |...|.
T Consensus 186 mLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~ 265 (513)
T COG0513 186 MLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLL 265 (513)
T ss_pred hhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999888885554 7788999999998766 888888
Q ss_pred HHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 358 ALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 358 ~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
.++.. ....++||||+++..++.|+..|+..|+.+..+||+++|++|.++++.|++|+.+||||||+.
T Consensus 266 ~ll~~---------~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDva 333 (513)
T COG0513 266 KLLKD---------EDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVA 333 (513)
T ss_pred HHHhc---------CCCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechh
Confidence 87765 333469999999999999999999999999999999999999999999999999999999985
No 8
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=5.5e-52 Score=418.71 Aligned_cols=343 Identities=36% Similarity=0.588 Sum_probs=301.2
Q ss_pred cCCCCCCCcc-cCCCHHHHHHHHHHcCceEEecCCCCCCCCCCCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhc
Q 013858 79 FNNWKPSDRV-LRFNPEQIEEVRLRLNVDVTVASGSVPAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALS 157 (435)
Q Consensus 79 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~ 157 (435)
...|...... ..++..+++.++...++.+.+. ..|.|+.+|++++|++.+++.|...||..|+|+|.++|+.++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~r~~~~i~~~g~----~~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~ 157 (518)
T PLN00206 82 ECFYVRDPGSTSGLSSSQAELLRRKLEIHVKGE----AVPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALS 157 (518)
T ss_pred CcCCccCcchhccCCHHHHHHHHHHCCCEecCC----CCCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhc
Confidence 3344443333 3488899999999999887653 7889999999999999999999999999999999999999999
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhcCC--CCCCCCCeEEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCH
Q 013858 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTP--VGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNI 235 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~--~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~ 235 (435)
|+|+++++|||||||++|++|++.++..... .....++++||++|||+||.|+.+.++.++... +++...++||...
T Consensus 158 g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~-~~~~~~~~gG~~~ 236 (518)
T PLN00206 158 GRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGL-PFKTALVVGGDAM 236 (518)
T ss_pred CCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHHhCCC-CceEEEEECCcch
Confidence 9999999999999999999999988765321 122357899999999999999999999998776 5888999999988
Q ss_pred HHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEcccccHHHH
Q 013858 236 AEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIE 315 (435)
Q Consensus 236 ~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SATl~~~~~ 315 (435)
..+...+..+++|+|+|||+|.+++.+....+.++++|||||||++++++|...+..++..++ ..|+++||||++..++
T Consensus 237 ~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~ 315 (518)
T PLN00206 237 PQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVMQIFQALS-QPQVLLFSATVSPEVE 315 (518)
T ss_pred HHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHH
Confidence 888888888899999999999999988888899999999999999999999999999998885 5799999999999999
Q ss_pred HHHHHHcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHH
Q 013858 316 ALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALV 395 (435)
Q Consensus 316 ~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~ 395 (435)
.++..++.++..+.++........+.+....+....|...+.+.+.... ...+++||||+++..++.+++.|.
T Consensus 316 ~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~k~~~l~~~l~~~~-------~~~~~~iVFv~s~~~a~~l~~~L~ 388 (518)
T PLN00206 316 KFASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQKKQKLFDILKSKQ-------HFKPPAVVFVSSRLGADLLANAIT 388 (518)
T ss_pred HHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccchhHHHHHHHHHHhhc-------ccCCCEEEEcCCchhHHHHHHHHh
Confidence 9999999999999988877777788888888888888777777765432 223469999999999999999997
Q ss_pred h-CCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 396 A-EGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 396 ~-~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
. .|+.+..+||++++.+|..+++.|++|+.+|||||+++
T Consensus 389 ~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl 428 (518)
T PLN00206 389 VVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVL 428 (518)
T ss_pred hccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHh
Confidence 5 58999999999999999999999999999999999976
No 9
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-52 Score=382.12 Aligned_cols=350 Identities=39% Similarity=0.603 Sum_probs=305.6
Q ss_pred CCCCccCCCCCCCcccCCCHHHHHHHHHHcC-ceEEec--CCCCCCCCCCCCcccC-CCCHHHHHHHHHCCCCCCcHHHH
Q 013858 74 VPQPVFNNWKPSDRVLRFNPEQIEEVRLRLN-VDVTVA--SGSVPAPAPIESFTDM-CLHPSIMKDIEFHEYTRPTSIQA 149 (435)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~--~~~~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~p~~~Q~ 149 (435)
.|....+.|+++...+.++..++..+++... +.+... ....++|.|..+|++. ...+++++.+++.||..|+|+|.
T Consensus 169 lpPi~knfYke~~e~s~ls~~q~~~~r~en~~it~dd~K~gekrpIPnP~ctFddAFq~~pevmenIkK~GFqKPtPIqS 248 (629)
T KOG0336|consen 169 LPPIKKNFYKESNETSNLSKEQLQEWRKENFNITCDDLKEGEKRPIPNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQS 248 (629)
T ss_pred CCchhhhhhhcCchhccCCHHHHHHHHHcCCcEEecccccCCcccCCCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchh
Confidence 3444556788888899999999998887644 444322 2335789999999985 78999999999999999999999
Q ss_pred HHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCC-CCCCCCCeEEEEccChhhHHHHHHHHHHHhhcCCCceEEE
Q 013858 150 QAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTP-VGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAI 228 (435)
Q Consensus 150 ~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~-~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~ 228 (435)
|+||.++.|.|++.+++||+|||++|++|.+.++..+.. .....+|.+|+++|||+||.|+.-++.++.- ++++.++
T Consensus 249 QaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kysy--ng~ksvc 326 (629)
T KOG0336|consen 249 QAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSY--NGLKSVC 326 (629)
T ss_pred cccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhhh--cCcceEE
Confidence 999999999999999999999999999999888766542 2234579999999999999999999988753 4899999
Q ss_pred EECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEcc
Q 013858 229 VVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSA 308 (435)
Q Consensus 229 ~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SA 308 (435)
++||.+..++...+.++.+|+++|||+|.++.+.+-.++..+.|+|+||||+|+++||.+++++|+-.+++++|+++.||
T Consensus 327 ~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRqtvmTSA 406 (629)
T KOG0336|consen 327 VYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSA 406 (629)
T ss_pred EecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCCcceeeeecc
Confidence 99999999999999999999999999999999988889999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHcCCCeEEEeCCCCC-CCCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHH
Q 013858 309 TMPVEIEALAQEYLTDPVQVKVGKVSS-PTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRC 387 (435)
Q Consensus 309 Tl~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~ 387 (435)
|||+.++.++..|+.+|+.+.++.... ....+.|.+....+.+|...+ ..+.+.. .+..++||||..+..|
T Consensus 407 TWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~-~~f~~~m-------s~ndKvIiFv~~K~~A 478 (629)
T KOG0336|consen 407 TWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIV-QFFVANM-------SSNDKVIIFVSRKVMA 478 (629)
T ss_pred cCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHHHHH-HHHHHhc-------CCCceEEEEEechhhh
Confidence 999999999999999999999988764 345688888555556666444 4443333 4556799999999999
Q ss_pred HHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCC
Q 013858 388 DEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYK 433 (435)
Q Consensus 388 ~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~ 433 (435)
+.|...|.-.|+.+..+||+..|.+|+..++.|++|+++||||||+
T Consensus 479 D~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDl 524 (629)
T KOG0336|consen 479 DHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDL 524 (629)
T ss_pred hhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEech
Confidence 9999999999999999999999999999999999999999999996
No 10
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-52 Score=364.73 Aligned_cols=305 Identities=32% Similarity=0.540 Sum_probs=281.0
Q ss_pred CCCCCCCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCC
Q 013858 115 PAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDG 194 (435)
Q Consensus 115 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~ 194 (435)
....++.+|++++|.+++++.++..||+.|..+|+.|++.+++|+|||.++..|+|||.+|.+.+++.+.-. ...
T Consensus 21 ~~~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~-----~r~ 95 (400)
T KOG0328|consen 21 EKVKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDIS-----VRE 95 (400)
T ss_pred cCcccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccc-----cce
Confidence 345667889999999999999999999999999999999999999999999999999999988777654332 123
Q ss_pred CeEEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEE
Q 013858 195 PLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVI 274 (435)
Q Consensus 195 ~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iI 274 (435)
-+++|+.|||+||.|+.+.+..++.+. ++.+-.+.||.+..+....+..+.+++.+|||++++++.++.+.-+.+.++|
T Consensus 96 tQ~lilsPTRELa~Qi~~vi~alg~~m-nvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlV 174 (400)
T KOG0328|consen 96 TQALILSPTRELAVQIQKVILALGDYM-NVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLV 174 (400)
T ss_pred eeEEEecChHHHHHHHHHHHHHhcccc-cceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEE
Confidence 689999999999999999999999987 6999999999998888888889999999999999999999888899999999
Q ss_pred EecCCcccCCCCHHHHHHHHHhCCCCCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEEEcChhh-HH
Q 013858 275 LDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENE-KV 353 (435)
Q Consensus 275 iDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~-k~ 353 (435)
+||||.|++.||..++..+++++|+++|++++|||+|.++.++.+.|+.+|+.+.+.+.......++|++..+..++ |+
T Consensus 175 LDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~EewKf 254 (400)
T KOG0328|consen 175 LDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKF 254 (400)
T ss_pred eccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhhhH
Confidence 99999999999999999999999999999999999999999999999999999999998888888999999997655 99
Q ss_pred HHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCC
Q 013858 354 DRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYK 433 (435)
Q Consensus 354 ~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~ 433 (435)
+.|..+... ....+++||||++..+++|.+.|++.++.|..+||+|+|++|+.++..|++|+.+||++||+
T Consensus 255 dtLcdLYd~---------LtItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDV 325 (400)
T KOG0328|consen 255 DTLCDLYDT---------LTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDV 325 (400)
T ss_pred hHHHHHhhh---------hehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEech
Confidence 998887754 33446999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 013858 434 L 434 (435)
Q Consensus 434 L 434 (435)
.
T Consensus 326 w 326 (400)
T KOG0328|consen 326 W 326 (400)
T ss_pred h
Confidence 4
No 11
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=9.3e-50 Score=399.38 Aligned_cols=299 Identities=41% Similarity=0.639 Sum_probs=273.0
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEE
Q 013858 121 ESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 200 (435)
Q Consensus 121 ~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil 200 (435)
.+|.+++|++.+.+.|..+||..|+|+|+++|+.++.|+|++++||||+|||++|++|++..+... ..++++||+
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~-----~~~~~~lil 78 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVK-----RFRVQALVL 78 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhc-----cCCceEEEE
Confidence 469999999999999999999999999999999999999999999999999999999999987542 225689999
Q ss_pred ccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCc
Q 013858 201 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADR 280 (435)
Q Consensus 201 ~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~ 280 (435)
+||++||.|+.+.++.++....++++..++||.....+...+..+++|+|+||++|.+++.++.+.+.++++|||||||+
T Consensus 79 ~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~ 158 (460)
T PRK11776 79 CPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADR 158 (460)
T ss_pred eCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHH
Confidence 99999999999999999877667899999999999888888888999999999999999988888899999999999999
Q ss_pred ccCCCCHHHHHHHHHhCCCCCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHHH
Q 013858 281 MLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALL 360 (435)
Q Consensus 281 ~~~~~~~~~i~~i~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l 360 (435)
+++++|...+..++..+++..|+++||||+|+.+..++..++.+|..+.+.... ....+.+.+..+....|...+...+
T Consensus 159 ~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~~~~~k~~~l~~ll 237 (460)
T PRK11776 159 MLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH-DLPAIEQRFYEVSPDERLPALQRLL 237 (460)
T ss_pred HhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC-CCCCeeEEEEEeCcHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988876544 3455888888888888888777776
Q ss_pred HHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 361 VEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 361 ~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
.. ..+.++||||++++.++.+++.|+..++.+..+||++++.+|+.+++.|++|+.+|||||+++
T Consensus 238 ~~---------~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~ 302 (460)
T PRK11776 238 LH---------HQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVA 302 (460)
T ss_pred Hh---------cCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEeccc
Confidence 43 344579999999999999999999999999999999999999999999999999999999986
No 12
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.8e-52 Score=385.69 Aligned_cols=302 Identities=35% Similarity=0.553 Sum_probs=272.6
Q ss_pred CCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEE
Q 013858 120 IESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALV 199 (435)
Q Consensus 120 ~~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~li 199 (435)
..+|.+++|+..+++++..+||..|+|+|..+||..+-|+|++.||.||||||.+|++|+|.+++..+.- -..-++||
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~--~~~TRVLV 257 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKK--VAATRVLV 257 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCccc--CcceeEEE
Confidence 3479999999999999999999999999999999999999999999999999999999999998875421 22468999
Q ss_pred EccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcC-CCCCCCceEEEEecC
Q 013858 200 LAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQG-NTSLSRVSFVILDEA 278 (435)
Q Consensus 200 l~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~-~~~l~~~~~iIiDEa 278 (435)
++|||+||.|++.+.++++.+. ++.++++.||-+...|...++.+++|+|+|||+|.+++.+. .+.+.++.++|+|||
T Consensus 258 L~PTRELaiQv~sV~~qlaqFt-~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEA 336 (691)
T KOG0338|consen 258 LVPTRELAIQVHSVTKQLAQFT-DITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEA 336 (691)
T ss_pred EeccHHHHHHHHHHHHHHHhhc-cceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechH
Confidence 9999999999999999999887 69999999999999999999999999999999999999775 588999999999999
Q ss_pred CcccCCCCHHHHHHHHHhCCCCCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEEEcCh---hhHHHH
Q 013858 279 DRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSE---NEKVDR 355 (435)
Q Consensus 279 h~~~~~~~~~~i~~i~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~---~~k~~~ 355 (435)
|||++.||..++..|+..|++.+|+++||||+...+.+++.--+.+|+.+.++..........|.+..+.. ..+-..
T Consensus 337 DRMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~ 416 (691)
T KOG0338|consen 337 DRMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAM 416 (691)
T ss_pred HHHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHH
Confidence 99999999999999999999999999999999999999999999999999999988888888888877642 223333
Q ss_pred HHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCC
Q 013858 356 LLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYK 433 (435)
Q Consensus 356 l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~ 433 (435)
+..++.... + ..++||+.+++.|..+.-.|--.|+.+.-+||.|+|+||.+.++.|+++++.||||||+
T Consensus 417 l~~l~~rtf--~-------~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDv 485 (691)
T KOG0338|consen 417 LASLITRTF--Q-------DRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDV 485 (691)
T ss_pred HHHHHHHhc--c-------cceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEech
Confidence 333333322 1 23999999999999999999999999999999999999999999999999999999996
No 13
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.4e-49 Score=393.86 Aligned_cols=304 Identities=34% Similarity=0.533 Sum_probs=271.9
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCC--CCCCCCeEE
Q 013858 121 ESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPV--GRGDGPLAL 198 (435)
Q Consensus 121 ~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~--~~~~~~~~l 198 (435)
.+|++++|++.+++.|..+||..|+++|.++||.++.|+|++++||||||||++|++|++..+...... ....++++|
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~l 87 (423)
T PRK04837 8 QKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRAL 87 (423)
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 469999999999999999999999999999999999999999999999999999999999988764321 122468999
Q ss_pred EEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecC
Q 013858 199 VLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEA 278 (435)
Q Consensus 199 il~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEa 278 (435)
|++|||+||.|+++.+..++... ++++..++||.....+...+..+++|+|+||++|++++..+.+.+.++++||||||
T Consensus 88 il~PtreLa~Qi~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEa 166 (423)
T PRK04837 88 IMAPTRELAVQIHADAEPLAQAT-GLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEA 166 (423)
T ss_pred EECCcHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecH
Confidence 99999999999999999998776 69999999999888888788888999999999999999888888999999999999
Q ss_pred CcccCCCCHHHHHHHHHhCCC--CCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHH
Q 013858 279 DRMLDMGFEPQIREVMQNLPD--KHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRL 356 (435)
Q Consensus 279 h~~~~~~~~~~i~~i~~~~~~--~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l 356 (435)
|++++.+|...+..++..++. ..+.++||||++..+..++..++.+|..+.+.........+.+.+.+.....|...+
T Consensus 167 d~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~~~k~~~l 246 (423)
T PRK04837 167 DRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSNEEKMRLL 246 (423)
T ss_pred HHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCCHHHHHHHH
Confidence 999999999999999998874 567899999999999999999999998888776665566777777777777888777
Q ss_pred HHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 357 LALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 357 ~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
..++.. ....++||||+++..|+.+++.|+..|+.+..+||++++.+|..+++.|++|+.+||||||++
T Consensus 247 ~~ll~~---------~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~ 315 (423)
T PRK04837 247 QTLIEE---------EWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVA 315 (423)
T ss_pred HHHHHh---------cCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechh
Confidence 766643 234569999999999999999999999999999999999999999999999999999999986
No 14
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=2.7e-49 Score=394.50 Aligned_cols=303 Identities=40% Similarity=0.671 Sum_probs=270.5
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCC-CCCCCCeEEEE
Q 013858 122 SFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPV-GRGDGPLALVL 200 (435)
Q Consensus 122 ~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~-~~~~~~~~lil 200 (435)
+|++++|++.+++.|..+||..|+++|.++|+.++.|+|+++++|||+|||++|++|++..+...... .....+++||+
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil 81 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALIL 81 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEE
Confidence 58899999999999999999999999999999999999999999999999999999999987654321 11234689999
Q ss_pred ccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCc
Q 013858 201 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADR 280 (435)
Q Consensus 201 ~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~ 280 (435)
+||++||.|+.+.++.+.... +++...++||.....+...+..+++|+|+||++|++.+....+.++++++|||||||+
T Consensus 82 ~PtreLa~Qi~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ 160 (456)
T PRK10590 82 TPTRELAAQIGENVRDYSKYL-NIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADR 160 (456)
T ss_pred eCcHHHHHHHHHHHHHHhccC-CCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHH
Confidence 999999999999999998776 6889999999998888878888899999999999999888788899999999999999
Q ss_pred ccCCCCHHHHHHHHHhCCCCCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHHH
Q 013858 281 MLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALL 360 (435)
Q Consensus 281 ~~~~~~~~~i~~i~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l 360 (435)
+++++|...+..++..++...|+++||||++..+..++..++.++..+.+.........+.+.+..+....+...+...+
T Consensus 161 ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~l~ 240 (456)
T PRK10590 161 MLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMI 240 (456)
T ss_pred HhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988887766666677888888887777765554444
Q ss_pred HHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 361 VEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 361 ~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
.. ....++||||+++..++.+++.|+..++.+..+||++++.+|..+++.|++|+.+|||||+++
T Consensus 241 ~~---------~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~ 305 (456)
T PRK10590 241 GK---------GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIA 305 (456)
T ss_pred Hc---------CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHH
Confidence 32 334569999999999999999999999999999999999999999999999999999999976
No 15
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.7e-51 Score=411.17 Aligned_cols=342 Identities=44% Similarity=0.702 Sum_probs=318.7
Q ss_pred CCCCCCCcccCCCHHHHHHHHHHcC-ceEEecCCCCCCCCCCCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC
Q 013858 80 NNWKPSDRVLRFNPEQIEEVRLRLN-VDVTVASGSVPAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSG 158 (435)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~ 158 (435)
.+|.+...+..++..+++.++.... +.+.+. .+|.|+.+|.+.+++..++..++++||..|+++|.+|||+|+.|
T Consensus 327 nfy~e~~di~~ms~~eV~~yr~~l~~i~v~g~----~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsG 402 (997)
T KOG0334|consen 327 NFYIEVRDIKRMSAAEVDEYRCELDGIKVKGK----ECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSG 402 (997)
T ss_pred cccccchhHHHHHHHHHHHhhcCccceeeccC----CCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccC
Confidence 4556667888999999999987766 777665 89999999999999999999999999999999999999999999
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHH
Q 013858 159 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQ 238 (435)
Q Consensus 159 ~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 238 (435)
++||.+|.||||||++|++|+|.+...+++...+.||.+||++|||+|+.|+.+.++.|.+.. ++++++++||.....+
T Consensus 403 rdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l-~ir~v~vygg~~~~~q 481 (997)
T KOG0334|consen 403 RDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKLL-GIRVVCVYGGSGISQQ 481 (997)
T ss_pred cceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhc-CceEEEecCCccHHHH
Confidence 999999999999999999999999999888888899999999999999999999999999886 8999999999999999
Q ss_pred HHHHhCCCcEEEECcHHHHHHHHcCCC---CCCCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEcccccHHHH
Q 013858 239 RSELRGGVSIVVATPGRFLDHLQQGNT---SLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIE 315 (435)
Q Consensus 239 ~~~~~~~~~I~v~T~~~l~~~l~~~~~---~l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SATl~~~~~ 315 (435)
...+.+++.|+|+|||+.++.+..+.. ++.++.++|+||||||++++|.+++..|+..+++.+|++++|||+|..++
T Consensus 482 iaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~ 561 (997)
T KOG0334|consen 482 IAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSME 561 (997)
T ss_pred HHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHH
Confidence 999999999999999999999876554 45666799999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCeEEEeCCCCCCCCceEEEEEEcC-hhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHH
Q 013858 316 ALAQEYLTDPVQVKVGKVSSPTANVIQILEKVS-ENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEAL 394 (435)
Q Consensus 316 ~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~-~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L 394 (435)
.+++..+..|+.+.++........+.|.+..+. ..+|+..|.++|..... .+++||||..++.|+.|.+.|
T Consensus 562 ~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e--------~~~tiiFv~~qe~~d~l~~~L 633 (997)
T KOG0334|consen 562 ALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKFLKLLELLGERYE--------DGKTIIFVDKQEKADALLRDL 633 (997)
T ss_pred HHHHHhhcCCeeEEEccceeEeccceEEEEEecCchHHHHHHHHHHHHHhh--------cCCEEEEEcCchHHHHHHHHH
Confidence 999999999999999988888999999998888 89999999999987754 346999999999999999999
Q ss_pred HhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 395 VAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 395 ~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
.+.|+.|..+||+.++.+|..+++.|++|.+.+||||+.+
T Consensus 634 ~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvv 673 (997)
T KOG0334|consen 634 QKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVV 673 (997)
T ss_pred HhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhh
Confidence 9999999999999999999999999999999999999975
No 16
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=2.5e-49 Score=403.98 Aligned_cols=300 Identities=38% Similarity=0.616 Sum_probs=275.1
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEE
Q 013858 121 ESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 200 (435)
Q Consensus 121 ~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil 200 (435)
.+|.+++|++.+++.|..+||..|+|+|.++|+.++.|+|+|++||||+|||++|++|++..+... ..++++||+
T Consensus 6 ~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~-----~~~~~~LIL 80 (629)
T PRK11634 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE-----LKAPQILVL 80 (629)
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc-----cCCCeEEEE
Confidence 359999999999999999999999999999999999999999999999999999999999886542 235789999
Q ss_pred ccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCc
Q 013858 201 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADR 280 (435)
Q Consensus 201 ~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~ 280 (435)
+||++||.|+++.++.+.....++.+..++||.....+...+..+++|+|+||++|++++.+..+.++++++|||||||.
T Consensus 81 ~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ 160 (629)
T PRK11634 81 APTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADE 160 (629)
T ss_pred eCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHH
Confidence 99999999999999999887778999999999998888888888999999999999999988888899999999999999
Q ss_pred ccCCCCHHHHHHHHHhCCCCCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHHH
Q 013858 281 MLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALL 360 (435)
Q Consensus 281 ~~~~~~~~~i~~i~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l 360 (435)
+++++|...+..++..++...|+++||||+|..+..+.+.|+.+|..+.+.........+.+.+..+....|...+...+
T Consensus 161 ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~~k~~~L~~~L 240 (629)
T PRK11634 161 MLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL 240 (629)
T ss_pred HhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEechhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988887766666677888888888888888877776
Q ss_pred HHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 361 VEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 361 ~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
.. ....++||||+++..++.|++.|...|+.+..+||++++.+|..+++.|++|+.+||||||++
T Consensus 241 ~~---------~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~ 305 (629)
T PRK11634 241 EA---------EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305 (629)
T ss_pred Hh---------cCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchH
Confidence 43 234569999999999999999999999999999999999999999999999999999999986
No 17
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=7.1e-49 Score=398.49 Aligned_cols=304 Identities=38% Similarity=0.567 Sum_probs=270.2
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCC--CCCCCCeEE
Q 013858 121 ESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPV--GRGDGPLAL 198 (435)
Q Consensus 121 ~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~--~~~~~~~~l 198 (435)
.+|++++|++.+++.|..+||..|+++|.++||.++.|+|+++++|||||||++|++|++..+...... ....++++|
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raL 88 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRAL 88 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 369999999999999999999999999999999999999999999999999999999999988653211 112357999
Q ss_pred EEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcC-CCCCCCceEEEEec
Q 013858 199 VLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQG-NTSLSRVSFVILDE 277 (435)
Q Consensus 199 il~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~-~~~l~~~~~iIiDE 277 (435)
||+||++||.|+++.+.+++... ++++..++|+.....+...+..+++|+|+||++|++++.+. .+.+..+++|||||
T Consensus 89 Il~PTreLa~Qi~~~~~~l~~~~-~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDE 167 (572)
T PRK04537 89 ILAPTRELAIQIHKDAVKFGADL-GLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDE 167 (572)
T ss_pred EEeCcHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecC
Confidence 99999999999999999998876 69999999999988888888888999999999999998764 36688999999999
Q ss_pred CCcccCCCCHHHHHHHHHhCCC--CCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHH
Q 013858 278 ADRMLDMGFEPQIREVMQNLPD--KHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDR 355 (435)
Q Consensus 278 ah~~~~~~~~~~i~~i~~~~~~--~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~ 355 (435)
||++++.+|...+..++..++. ..|+++||||++..+..+...++.++..+.+.........+.+.+.......|...
T Consensus 168 Ah~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~ 247 (572)
T PRK04537 168 ADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPADEEKQTL 247 (572)
T ss_pred HHHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecCHHHHHHH
Confidence 9999999999999999999886 78999999999999999999999988877766655556678888888888888877
Q ss_pred HHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 356 LLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 356 l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
+..++.. ....++||||+++..|+.|++.|...++.+..+||+|++.+|..+++.|++|+.+||||||++
T Consensus 248 L~~ll~~---------~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~ 317 (572)
T PRK04537 248 LLGLLSR---------SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVA 317 (572)
T ss_pred HHHHHhc---------ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhh
Confidence 7766643 334579999999999999999999999999999999999999999999999999999999986
No 18
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.7e-50 Score=379.48 Aligned_cols=322 Identities=43% Similarity=0.664 Sum_probs=292.4
Q ss_pred CCCCCCCCCCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCC
Q 013858 112 GSVPAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGR 191 (435)
Q Consensus 112 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~ 191 (435)
.+.+.|.++..|.+..+.+.+..+++..++..|+|+|+.+||.+..|+++++||+||+|||.+|++|++.++....+...
T Consensus 65 ~G~~~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~ 144 (482)
T KOG0335|consen 65 SGRDVPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDR 144 (482)
T ss_pred cCCccCCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccC
Confidence 34578888889999999999999999999999999999999999999999999999999999999999999988754322
Q ss_pred -----CCCCeEEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCC
Q 013858 192 -----GDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTS 266 (435)
Q Consensus 192 -----~~~~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~ 266 (435)
+..|++||++|||+||.|++++++++.-.. .++....|||.+...+.....++|+|+|+|||+|.+.+..+.+.
T Consensus 145 ~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s-~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~ 223 (482)
T KOG0335|consen 145 GESGGGVYPRALILAPTRELVDQIYNEARKFSYLS-GMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKIS 223 (482)
T ss_pred cccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccc-cceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceee
Confidence 135999999999999999999999998554 79999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEecCCcccC-CCCHHHHHHHHHhCCC----CCeEEEEcccccHHHHHHHHHHcCC-CeEEEeCCCCCCCCce
Q 013858 267 LSRVSFVILDEADRMLD-MGFEPQIREVMQNLPD----KHQTLLFSATMPVEIEALAQEYLTD-PVQVKVGKVSSPTANV 340 (435)
Q Consensus 267 l~~~~~iIiDEah~~~~-~~~~~~i~~i~~~~~~----~~q~i~~SATl~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~i 340 (435)
|.+++++||||||+|++ ++|.+.+++|+..... .+|.++||||+|..+..++..|+.+ ++.+.++.......++
T Consensus 224 l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni 303 (482)
T KOG0335|consen 224 LDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENI 303 (482)
T ss_pred hhhCcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccc
Confidence 99999999999999999 9999999999988744 7899999999999999999999886 8999999999999999
Q ss_pred EEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHH
Q 013858 341 IQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDF 420 (435)
Q Consensus 341 ~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f 420 (435)
.|.+.++.+.+|...|++++.+......+......+++|||.+++.|.+|+..|...++++..+||..+|.+|.+.+..|
T Consensus 304 ~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~F 383 (482)
T KOG0335|consen 304 TQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDF 383 (482)
T ss_pred eeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHh
Confidence 99999999999999999999764422112112234799999999999999999999999999999999999999999999
Q ss_pred HcCCCcEEEEcCCC
Q 013858 421 RNGSTNILVFSYKL 434 (435)
Q Consensus 421 ~~g~~~VLVaT~~L 434 (435)
++|+..|||||++.
T Consensus 384 r~g~~pvlVaT~Va 397 (482)
T KOG0335|consen 384 RNGKAPVLVATNVA 397 (482)
T ss_pred hcCCcceEEEehhh
Confidence 99999999999975
No 19
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=1.7e-47 Score=380.71 Aligned_cols=302 Identities=35% Similarity=0.557 Sum_probs=267.3
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEc
Q 013858 122 SFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 201 (435)
Q Consensus 122 ~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~ 201 (435)
+|+++++++.+++.|..+||..|+++|.++|+.++.|+|+++++|||+|||++|++|++.++..... ....++++||++
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~-~~~~~~~~lil~ 80 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPR-RKSGPPRILILT 80 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccc-cCCCCceEEEEC
Confidence 5899999999999999999999999999999999999999999999999999999999998875421 122357899999
Q ss_pred cChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcc
Q 013858 202 PTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRM 281 (435)
Q Consensus 202 P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~ 281 (435)
||++||.|+++.+..++... ++.+..++||.....+...+..+++|+|+||++|++++....+.+.++++|||||||++
T Consensus 81 Pt~eLa~Q~~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~ 159 (434)
T PRK11192 81 PTRELAMQVADQARELAKHT-HLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRM 159 (434)
T ss_pred CcHHHHHHHHHHHHHHHccC-CcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHH
Confidence 99999999999999999876 69999999999988888778888999999999999999888888999999999999999
Q ss_pred cCCCCHHHHHHHHHhCCCCCeEEEEcccccH-HHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEEEcCh-hhHHHHHHHH
Q 013858 282 LDMGFEPQIREVMQNLPDKHQTLLFSATMPV-EIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSE-NEKVDRLLAL 359 (435)
Q Consensus 282 ~~~~~~~~i~~i~~~~~~~~q~i~~SATl~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~~ 359 (435)
++++|...+..+...++...|+++||||++. .+..+...++.+++.+...........+.+.+..... ..|...+...
T Consensus 160 l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l 239 (434)
T PRK11192 160 LDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLCHL 239 (434)
T ss_pred hCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHHHHHHHHHH
Confidence 9999999999999999989999999999975 5888888999999988877766666677777776654 4455544444
Q ss_pred HHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 360 LVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 360 l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
+.. ....++||||+++++|+.+++.|+..++.+..+||++++.+|..+++.|++|+.+||||||++
T Consensus 240 ~~~---------~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~ 305 (434)
T PRK11192 240 LKQ---------PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVA 305 (434)
T ss_pred Hhc---------CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEcccc
Confidence 422 344679999999999999999999999999999999999999999999999999999999986
No 20
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.4e-50 Score=356.59 Aligned_cols=298 Identities=32% Similarity=0.550 Sum_probs=277.4
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEE
Q 013858 121 ESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 200 (435)
Q Consensus 121 ~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil 200 (435)
..|+++.|..+++..+...||.+|.|+|+++||.++.|+|++..+..|+|||.+|.+|++..+... ....+++|+
T Consensus 85 ~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~-----~~~IQ~~il 159 (459)
T KOG0326|consen 85 NEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPK-----KNVIQAIIL 159 (459)
T ss_pred ccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCcc-----ccceeEEEE
Confidence 359999999999999999999999999999999999999999999999999999999999987553 235789999
Q ss_pred ccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCc
Q 013858 201 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADR 280 (435)
Q Consensus 201 ~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~ 280 (435)
+|||+||.|+...++++++++ ++++...+||++..+..-.+....+++|+|||++++++.++-..++++.++|+||||.
T Consensus 160 VPtrelALQtSqvc~~lskh~-~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADK 238 (459)
T KOG0326|consen 160 VPTRELALQTSQVCKELSKHL-GIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADK 238 (459)
T ss_pred eecchhhHHHHHHHHHHhccc-CeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhh
Confidence 999999999999999999998 6999999999999988888888899999999999999998878899999999999999
Q ss_pred ccCCCCHHHHHHHHHhCCCCCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHHH
Q 013858 281 MLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALL 360 (435)
Q Consensus 281 ~~~~~~~~~i~~i~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l 360 (435)
++..+|...+..++..+|+..|++++|||+|-.+..+..+++.+|..|.+-.. .....+.|+|.++.+..|+..|-.++
T Consensus 239 lLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~e-Ltl~GvtQyYafV~e~qKvhCLntLf 317 (459)
T KOG0326|consen 239 LLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEE-LTLKGVTQYYAFVEERQKVHCLNTLF 317 (459)
T ss_pred hhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhh-hhhcchhhheeeechhhhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999987543 34567899999999999999888888
Q ss_pred HHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 361 VEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 361 ~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
.+.. ..+.|||||+.+.++.||+.+.+.|+.|..+|+.|-|++|.+++..|++|.++.|||||.+
T Consensus 318 skLq---------INQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~ 382 (459)
T KOG0326|consen 318 SKLQ---------INQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLF 382 (459)
T ss_pred HHhc---------ccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhh
Confidence 7643 3358999999999999999999999999999999999999999999999999999999976
No 21
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=1e-48 Score=368.55 Aligned_cols=304 Identities=34% Similarity=0.545 Sum_probs=277.0
Q ss_pred CCCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEE
Q 013858 119 PIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLAL 198 (435)
Q Consensus 119 ~~~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~l 198 (435)
.+..|.+++|+...+++|+..+|..|+.+|+++||..+.|+||+..+.||||||++|++|++..++... +....|-.+|
T Consensus 67 ~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~k-Ws~~DGlGal 145 (758)
T KOG0343|consen 67 TIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLK-WSPTDGLGAL 145 (758)
T ss_pred hhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcC-CCCCCCceeE
Confidence 345699999999999999999999999999999999999999999999999999999999999987643 3455688899
Q ss_pred EEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcC-CCCCCCceEEEEec
Q 013858 199 VLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQG-NTSLSRVSFVILDE 277 (435)
Q Consensus 199 il~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~-~~~l~~~~~iIiDE 277 (435)
||.|||+||.|+++.+.+.++++ ++.++++.||.........+. +..|+|||||+|++++... .+...++.++|+||
T Consensus 146 IISPTRELA~QtFevL~kvgk~h-~fSaGLiiGG~~~k~E~eRi~-~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDE 223 (758)
T KOG0343|consen 146 IISPTRELALQTFEVLNKVGKHH-DFSAGLIIGGKDVKFELERIS-QMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDE 223 (758)
T ss_pred EecchHHHHHHHHHHHHHHhhcc-ccccceeecCchhHHHHHhhh-cCCeEEechHHHHHHhhhcCCCCCCcceEEEecc
Confidence 99999999999999999999886 799999999998776665554 5899999999999999875 46678899999999
Q ss_pred CCcccCCCCHHHHHHHHHhCCCCCeEEEEcccccHHHHHHHHHHcCCCeEEEeCC--CCCCCCceEEEEEEcChhhHHHH
Q 013858 278 ADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGK--VSSPTANVIQILEKVSENEKVDR 355 (435)
Q Consensus 278 ah~~~~~~~~~~i~~i~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~i~~~~~~~~~~~k~~~ 355 (435)
|||++++||...+..|+..+|+.+|+++||||....+.++++--+.+|..|.+.. ....+....|+|..++..+|++.
T Consensus 224 ADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~ 303 (758)
T KOG0343|consen 224 ADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDM 303 (758)
T ss_pred HHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHH
Confidence 9999999999999999999999999999999999999999999999998887763 34566789999999999999999
Q ss_pred HHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhC--CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCC
Q 013858 356 LLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE--GLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYK 433 (435)
Q Consensus 356 l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~--~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~ 433 (435)
|..++.. +...++|||+.+.+++..+++.+++. |+.+..+||+|.|..|..++..|-..+.-||+|||+
T Consensus 304 L~sFI~s---------hlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv 374 (758)
T KOG0343|consen 304 LWSFIKS---------HLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDV 374 (758)
T ss_pred HHHHHHh---------ccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehh
Confidence 9999977 44557999999999999999999876 899999999999999999999999999999999997
Q ss_pred C
Q 013858 434 L 434 (435)
Q Consensus 434 L 434 (435)
.
T Consensus 375 ~ 375 (758)
T KOG0343|consen 375 A 375 (758)
T ss_pred h
Confidence 5
No 22
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=6.4e-48 Score=359.73 Aligned_cols=306 Identities=33% Similarity=0.487 Sum_probs=276.3
Q ss_pred CCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEE
Q 013858 120 IESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALV 199 (435)
Q Consensus 120 ~~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~li 199 (435)
...|+...|++..+++++.+||..++++|...|+.++.|+|+++.|.||+|||++|++|+++.+.+.....+ ++-.++|
T Consensus 81 ~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r-~~~~vlI 159 (543)
T KOG0342|consen 81 TFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPR-NGTGVLI 159 (543)
T ss_pred hhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCC-CCeeEEE
Confidence 345888999999999999999999999999999999999999999999999999999999999887654433 5778999
Q ss_pred EccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcC-CCCCCCceEEEEecC
Q 013858 200 LAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQG-NTSLSRVSFVILDEA 278 (435)
Q Consensus 200 l~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~-~~~l~~~~~iIiDEa 278 (435)
++|||+||.|++.+++++..+++.+.++++.||++.......+.+++.|+|+|||+|++++++. .+..+.++++|+|||
T Consensus 160 i~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEA 239 (543)
T KOG0342|consen 160 ICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEA 239 (543)
T ss_pred ecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecc
Confidence 9999999999999999999998789999999999998888888889999999999999999875 455677889999999
Q ss_pred CcccCCCCHHHHHHHHHhCCCCCeEEEEcccccHHHHHHHHHHcCC-CeEEEeCCCC--CCCCceEEEEEEcChhhHHHH
Q 013858 279 DRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTD-PVQVKVGKVS--SPTANVIQILEKVSENEKVDR 355 (435)
Q Consensus 279 h~~~~~~~~~~i~~i~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~-~~~i~~~~~~--~~~~~i~~~~~~~~~~~k~~~ 355 (435)
||++++||...+..|+..+|..+|.++||||.++.++++++--+.. ++.+...... .....+.|-+..++...++..
T Consensus 240 DrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~l 319 (543)
T KOG0342|consen 240 DRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFSL 319 (543)
T ss_pred hhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHHH
Confidence 9999999999999999999999999999999999999999887764 7777665443 344668898888888888888
Q ss_pred HHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 356 LLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 356 l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
++.++++.... .++||||+|......+++.|+...++|..+||+++|..|..++..|++.+.-||||||+-
T Consensus 320 l~~~LKk~~~~--------~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVa 390 (543)
T KOG0342|consen 320 LYTFLKKNIKR--------YKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVA 390 (543)
T ss_pred HHHHHHHhcCC--------ceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchh
Confidence 88888775422 469999999999999999999999999999999999999999999999999999999974
No 23
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.2e-48 Score=347.80 Aligned_cols=302 Identities=35% Similarity=0.496 Sum_probs=266.1
Q ss_pred CCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEE
Q 013858 120 IESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALV 199 (435)
Q Consensus 120 ~~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~li 199 (435)
...|..+|+++|+.+.|+.+|++.|+|+|..|||.|+.|+|+|.||.||||||++|.+|+|+++.. .+.|-.++|
T Consensus 6 ~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLse-----dP~giFalv 80 (442)
T KOG0340|consen 6 AKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSE-----DPYGIFALV 80 (442)
T ss_pred cCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhcc-----CCCcceEEE
Confidence 456999999999999999999999999999999999999999999999999999999999999776 345788999
Q ss_pred EccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcC----CCCCCCceEEEE
Q 013858 200 LAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQG----NTSLSRVSFVIL 275 (435)
Q Consensus 200 l~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~----~~~l~~~~~iIi 275 (435)
++|||+||.|+.++|..+++.. ++++.+++||+..-.+...+..++|++|+|||++..++..+ .+.++++.++|+
T Consensus 81 lTPTrELA~QiaEQF~alGk~l-~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVl 159 (442)
T KOG0340|consen 81 LTPTRELALQIAEQFIALGKLL-NLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVL 159 (442)
T ss_pred ecchHHHHHHHHHHHHHhcccc-cceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEe
Confidence 9999999999999999999887 79999999999999999999999999999999999888764 234789999999
Q ss_pred ecCCcccCCCCHHHHHHHHHhCCCCCeEEEEcccccHHHHHHHHHHcCCC--eEEEeCCCCCCCCceEEEEEEcChhhHH
Q 013858 276 DEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDP--VQVKVGKVSSPTANVIQILEKVSENEKV 353 (435)
Q Consensus 276 DEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~i~~~~~~~~~~~k~ 353 (435)
||||++++.+|...+..+...+|+.+|.++||||+.+.+..+...-...+ ................|.+..++...|-
T Consensus 160 DEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkd 239 (442)
T KOG0340|consen 160 DEADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKD 239 (442)
T ss_pred cchhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhH
Confidence 99999999999999999999999999999999999877766543333332 2222222233445678889999999999
Q ss_pred HHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCC
Q 013858 354 DRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYK 433 (435)
Q Consensus 354 ~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~ 433 (435)
-|++..+.....+ +.+.++||+++..+|+.|+-.|+..++.+..+||.|+|.+|...+.+|+++..+||||||+
T Consensus 240 aYLv~~Lr~~~~~------~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDV 313 (442)
T KOG0340|consen 240 AYLVHLLRDFENK------ENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDV 313 (442)
T ss_pred HHHHHHHhhhhhc------cCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEech
Confidence 9999999876543 2345999999999999999999999999999999999999999999999999999999996
No 24
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.8e-46 Score=375.22 Aligned_cols=306 Identities=38% Similarity=0.575 Sum_probs=267.9
Q ss_pred CCCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCC--CCCCCe
Q 013858 119 PIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVG--RGDGPL 196 (435)
Q Consensus 119 ~~~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~--~~~~~~ 196 (435)
....|.+++|++.+++.|..+||..|+++|.++|+.++.|+|+|+++|||||||++|++|++..+....... ....++
T Consensus 85 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~ 164 (475)
T PRK01297 85 GKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPR 164 (475)
T ss_pred CCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCce
Confidence 345688999999999999999999999999999999999999999999999999999999999887643111 112578
Q ss_pred EEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHh-CCCcEEEECcHHHHHHHHcCCCCCCCceEEEE
Q 013858 197 ALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELR-GGVSIVVATPGRFLDHLQQGNTSLSRVSFVIL 275 (435)
Q Consensus 197 ~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIi 275 (435)
+|||+||++||.|+.+.++.+.... ++++..++||.....+...+. ..++|+|+||++|+.++..+...++++++|||
T Consensus 165 aLil~PtreLa~Q~~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lVi 243 (475)
T PRK01297 165 ALIIAPTRELVVQIAKDAAALTKYT-GLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVL 243 (475)
T ss_pred EEEEeCcHHHHHHHHHHHHHhhccC-CCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEe
Confidence 9999999999999999999998776 688999999988776666554 56899999999999998887888999999999
Q ss_pred ecCCcccCCCCHHHHHHHHHhCCC--CCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEEEcChhhHH
Q 013858 276 DEADRMLDMGFEPQIREVMQNLPD--KHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKV 353 (435)
Q Consensus 276 DEah~~~~~~~~~~i~~i~~~~~~--~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~ 353 (435)
||||++++.+|...+..++..++. ..|++++|||++..+..+++.|+.++..+.+.........+.+.+..+...++.
T Consensus 244 DEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~k~ 323 (475)
T PRK01297 244 DEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGSDKY 323 (475)
T ss_pred chHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecchhHH
Confidence 999999999999999999988864 579999999999999999999999998887776666566677887777777777
Q ss_pred HHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCC
Q 013858 354 DRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYK 433 (435)
Q Consensus 354 ~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~ 433 (435)
..+..++.. ....++||||+++++++.+++.|...|+.+..+||++++++|.++++.|++|+.+||||||+
T Consensus 324 ~~l~~ll~~---------~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~ 394 (475)
T PRK01297 324 KLLYNLVTQ---------NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDV 394 (475)
T ss_pred HHHHHHHHh---------cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccc
Confidence 766666543 33457999999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q 013858 434 L 434 (435)
Q Consensus 434 L 434 (435)
|
T Consensus 395 l 395 (475)
T PRK01297 395 A 395 (475)
T ss_pred c
Confidence 6
No 25
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-47 Score=352.53 Aligned_cols=305 Identities=31% Similarity=0.487 Sum_probs=278.3
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCC-CCCCCCeEEE
Q 013858 121 ESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPV-GRGDGPLALV 199 (435)
Q Consensus 121 ~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~-~~~~~~~~li 199 (435)
.+|++++|++.+++++.+.|+..|+-+|..+||.++.|+|++..|.||||||.+|++|+++.++.+... ....++.++|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 479999999999999999999999999999999999999999999999999999999999999887655 4556899999
Q ss_pred EccChhhHHHHHHHHHHHhhcCC-CceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCC-CCCCCceEEEEec
Q 013858 200 LAPTRELAQQIEKEVKALSRSLD-SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGN-TSLSRVSFVILDE 277 (435)
Q Consensus 200 l~P~r~la~q~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~-~~l~~~~~iIiDE 277 (435)
++||++||.|++..+.++...+. .+++.-+....+.......+...++|+|+||+++++++..+- ..+..++++|+||
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDE 178 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDE 178 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEech
Confidence 99999999999999999887765 677777777777777777888889999999999999998875 5678899999999
Q ss_pred CCcccCCCCHHHHHHHHHhCCCCCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCCC-CCceEEEEEEcChhhHHHHH
Q 013858 278 ADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSP-TANVIQILEKVSENEKVDRL 356 (435)
Q Consensus 278 ah~~~~~~~~~~i~~i~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~i~~~~~~~~~~~k~~~l 356 (435)
||-++..||...+.++..++|+.+|.++||||+..++..+.+-++.+|+.+.+.....+ ...+.|++..+.+.+|+..+
T Consensus 179 ADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKflll 258 (569)
T KOG0346|consen 179 ADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLL 258 (569)
T ss_pred hhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHHHH
Confidence 99999999999999999999999999999999999999999999999999988776654 35688899999999999888
Q ss_pred HHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCC
Q 013858 357 LALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYK 433 (435)
Q Consensus 357 ~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~ 433 (435)
+.+++-.. ..|++|||+|+.+.|..|.-+|.+.|+..+++.|.||..-|.-+++.|..|-++|+||||.
T Consensus 259 yallKL~L--------I~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~ 327 (569)
T KOG0346|consen 259 YALLKLRL--------IRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDD 327 (569)
T ss_pred HHHHHHHH--------hcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccC
Confidence 88776543 3456999999999999999999999999999999999999999999999999999999983
No 26
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.4e-47 Score=349.68 Aligned_cols=304 Identities=31% Similarity=0.478 Sum_probs=269.8
Q ss_pred CcccC--CCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEE
Q 013858 122 SFTDM--CLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALV 199 (435)
Q Consensus 122 ~~~~~--~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~li 199 (435)
.|+++ +|++++++.+...||...||+|..+||.++.++||++.++||||||++|++|++..+.....-..+..-.+||
T Consensus 5 ~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalI 84 (567)
T KOG0345|consen 5 SFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALI 84 (567)
T ss_pred chhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEE
Confidence 36666 4669999999999999999999999999999999999999999999999999999986543222221247999
Q ss_pred EccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHH-hCCCcEEEECcHHHHHHHHcC--CCCCCCceEEEEe
Q 013858 200 LAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL-RGGVSIVVATPGRFLDHLQQG--NTSLSRVSFVILD 276 (435)
Q Consensus 200 l~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~I~v~T~~~l~~~l~~~--~~~l~~~~~iIiD 276 (435)
|+|||+||.|+.+++..|..+++.+++.+++||....+....+ ..++.|+|+|||+|.+++.+. .+.++.++++|+|
T Consensus 85 IsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLD 164 (567)
T KOG0345|consen 85 ISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLD 164 (567)
T ss_pred ecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEec
Confidence 9999999999999999999998899999999998877665554 567899999999999999874 3556699999999
Q ss_pred cCCcccCCCCHHHHHHHHHhCCCCCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCC--CCCceEEEEEEcChhhHHH
Q 013858 277 EADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSS--PTANVIQILEKVSENEKVD 354 (435)
Q Consensus 277 Eah~~~~~~~~~~i~~i~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~i~~~~~~~~~~~k~~ 354 (435)
||||++++||...++.|+..+|+.+++=+||||...++.++.+..+.||+.+.++.... .+..+...|..+....|..
T Consensus 165 EADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~~ 244 (567)
T KOG0345|consen 165 EADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKLS 244 (567)
T ss_pred chHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988775 5566788888899999999
Q ss_pred HHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhC--CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcC
Q 013858 355 RLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE--GLHAVALHGGRNQSDRESALRDFRNGSTNILVFSY 432 (435)
Q Consensus 355 ~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~--~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~ 432 (435)
.+++++.+ ....++|||.+|-..++.....|... ...+..+||.|.+.+|..+++.|++....||+|||
T Consensus 245 ~lv~~L~~---------~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TD 315 (567)
T KOG0345|consen 245 QLVHLLNN---------NKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTD 315 (567)
T ss_pred HHHHHHhc---------cccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeeh
Confidence 99999977 33456999999999999998888765 67899999999999999999999999999999999
Q ss_pred CC
Q 013858 433 KL 434 (435)
Q Consensus 433 ~L 434 (435)
+.
T Consensus 316 Va 317 (567)
T KOG0345|consen 316 VA 317 (567)
T ss_pred hh
Confidence 85
No 27
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=7e-45 Score=359.19 Aligned_cols=300 Identities=34% Similarity=0.544 Sum_probs=261.3
Q ss_pred CCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEE
Q 013858 120 IESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALV 199 (435)
Q Consensus 120 ~~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~li 199 (435)
..+|+++++++.+.+.|..+||..|+++|.++|+.++.|+|+++++|||+|||++|++|++..+... ..++++||
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~-----~~~~~~li 101 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYD-----LNACQALI 101 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCC-----CCCceEEE
Confidence 4669999999999999999999999999999999999999999999999999999999999876431 23578999
Q ss_pred EccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCC
Q 013858 200 LAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEAD 279 (435)
Q Consensus 200 l~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah 279 (435)
++|+++|+.|+.+.+..++... .+.+..++|+....+....+..+++|+|+||++|.+.+..+...++++++|||||||
T Consensus 102 l~Pt~~L~~Q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah 180 (401)
T PTZ00424 102 LAPTRELAQQIQKVVLALGDYL-KVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEAD 180 (401)
T ss_pred ECCCHHHHHHHHHHHHHHhhhc-CceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHH
Confidence 9999999999999999998765 578888899988877777778889999999999999988877789999999999999
Q ss_pred cccCCCCHHHHHHHHHhCCCCCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEEEcChh-hHHHHHHH
Q 013858 280 RMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSEN-EKVDRLLA 358 (435)
Q Consensus 280 ~~~~~~~~~~i~~i~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~-~k~~~l~~ 358 (435)
++.+.++...+..++..+++..|++++|||+|..+..+...++.++..+.+.........+.+++..+... .+...+..
T Consensus 181 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 260 (401)
T PTZ00424 181 EMLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDTLCD 260 (401)
T ss_pred HHHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888876665555556677777666543 34444443
Q ss_pred HHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 359 LLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 359 ~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
.+.. ....++||||+++++++.+++.|+..++.+..+||++++.+|..+++.|++|+.+|||||+++
T Consensus 261 ~~~~---------~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l 327 (401)
T PTZ00424 261 LYET---------LTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLL 327 (401)
T ss_pred HHHh---------cCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccc
Confidence 3322 334569999999999999999999999999999999999999999999999999999999986
No 28
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-45 Score=346.31 Aligned_cols=312 Identities=33% Similarity=0.556 Sum_probs=272.8
Q ss_pred CCCCCcccCCCCHHHHHHHH-HCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcC-CCCCCCCC
Q 013858 118 APIESFTDMCLHPSIMKDIE-FHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQT-PVGRGDGP 195 (435)
Q Consensus 118 ~~~~~~~~~~l~~~l~~~l~-~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~-~~~~~~~~ 195 (435)
-....|..++|++.+...|. .+++..||.+|+++||.++.|+|++|.++||||||++|++|+++.+.... ...+..|+
T Consensus 133 fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~ 212 (708)
T KOG0348|consen 133 FTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGP 212 (708)
T ss_pred cccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCc
Confidence 33456999999999999985 57999999999999999999999999999999999999999999987754 56778899
Q ss_pred eEEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcC-CCCCCCceEEE
Q 013858 196 LALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQG-NTSLSRVSFVI 274 (435)
Q Consensus 196 ~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~-~~~l~~~~~iI 274 (435)
.+|||+|||+||.|+++.++++.+.+..+--+.+.||.........+++|+.|+|+|||+|++++.+. .+.+++++|||
T Consensus 213 ~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlV 292 (708)
T KOG0348|consen 213 YALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLV 292 (708)
T ss_pred eEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEE
Confidence 99999999999999999999999888777778899999999999999999999999999999999874 57789999999
Q ss_pred EecCCcccCCCCHHHHHHHHHhC-------------CCCCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCC--------
Q 013858 275 LDEADRMLDMGFEPQIREVMQNL-------------PDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKV-------- 333 (435)
Q Consensus 275 iDEah~~~~~~~~~~i~~i~~~~-------------~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~-------- 333 (435)
+|||||+++.||...+..|+..+ |...|.+++|||+...+..++.--+.+|+.|..+..
T Consensus 293 lDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~ 372 (708)
T KOG0348|consen 293 LDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKD 372 (708)
T ss_pred ecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcch
Confidence 99999999999999988888775 224788999999999999999999999999873211
Q ss_pred -----------------CCCCCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHh
Q 013858 334 -----------------SSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVA 396 (435)
Q Consensus 334 -----------------~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~ 396 (435)
...+....|.+..++..-++-.|..++.+.+....+ .++|||+.+.+.++.-+..|..
T Consensus 373 ~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~-----qk~iVF~S~~d~VeFHy~lf~~ 447 (708)
T KOG0348|consen 373 KAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEK-----QKMIVFFSCSDSVEFHYSLFSE 447 (708)
T ss_pred hhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhh-----ceeEEEEechhHHHHHHHHHHh
Confidence 122344677888889999999999999888776544 3699999999999998888865
Q ss_pred C----------------------CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 397 E----------------------GLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 397 ~----------------------~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
. +..+.-+||+|+|++|..+++.|......||+|||+-
T Consensus 448 ~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVA 507 (708)
T KOG0348|consen 448 ALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVA 507 (708)
T ss_pred hhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhh
Confidence 2 2468899999999999999999999999999999973
No 29
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-44 Score=326.33 Aligned_cols=304 Identities=27% Similarity=0.450 Sum_probs=266.1
Q ss_pred CCCCCCCCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC--CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCC
Q 013858 114 VPAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSG--RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGR 191 (435)
Q Consensus 114 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~--~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~ 191 (435)
........+|++++|.++++++++.|+|.+|+.+|+.++|.++.. +++|.++..|+|||.+|.+.+|.++....
T Consensus 83 nsPlyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~---- 158 (477)
T KOG0332|consen 83 NSPLYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDV---- 158 (477)
T ss_pred CCCccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccc----
Confidence 344566788999999999999999999999999999999999976 68999999999999999999998875532
Q ss_pred CCCCeEEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHc-CCCCCCCc
Q 013858 192 GDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQ-GNTSLSRV 270 (435)
Q Consensus 192 ~~~~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~-~~~~l~~~ 270 (435)
..|++++|+|+|+||.|+.+.+.++++.. ++.......+....+. ..+ ..+|+|+|||.+++++.. ..+.+.++
T Consensus 159 -~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~-~ita~yair~sk~~rG-~~i--~eqIviGTPGtv~Dlm~klk~id~~ki 233 (477)
T KOG0332|consen 159 -VVPQCICLAPTRELAPQTGEVVEEMGKFT-ELTASYAIRGSKAKRG-NKL--TEQIVIGTPGTVLDLMLKLKCIDLEKI 233 (477)
T ss_pred -cCCCceeeCchHHHHHHHHHHHHHhcCce-eeeEEEEecCcccccC-Ccc--hhheeeCCCccHHHHHHHHHhhChhhc
Confidence 35899999999999999999999999887 6777776666521110 111 148999999999999887 67788999
Q ss_pred eEEEEecCCcccC-CCCHHHHHHHHHhCCCCCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEEEcC-
Q 013858 271 SFVILDEADRMLD-MGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVS- 348 (435)
Q Consensus 271 ~~iIiDEah~~~~-~~~~~~i~~i~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~- 348 (435)
+.+|+|||+.|++ .||..+-..|...+|..+|++++|||+...+..++..+..++..+.+........++.|++..+.
T Consensus 234 kvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~ 313 (477)
T KOG0332|consen 234 KVFVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCAC 313 (477)
T ss_pred eEEEecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccc
Confidence 9999999998877 57999999999999999999999999999999999999999999999999999999999988875
Q ss_pred hhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEE
Q 013858 349 ENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNIL 428 (435)
Q Consensus 349 ~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VL 428 (435)
+.+|+..+.++..- ...++.||||.+++.|.+|+..|+..|+.|..+||+|..++|..++++|+.|+.+||
T Consensus 314 ~~~K~~~l~~lyg~---------~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVL 384 (477)
T KOG0332|consen 314 RDDKYQALVNLYGL---------LTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVL 384 (477)
T ss_pred hhhHHHHHHHHHhh---------hhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEE
Confidence 66788887775433 344569999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCC
Q 013858 429 VFSYKLL 435 (435)
Q Consensus 429 VaT~~L~ 435 (435)
|+||++.
T Consensus 385 itTnV~A 391 (477)
T KOG0332|consen 385 ITTNVCA 391 (477)
T ss_pred EEechhh
Confidence 9999863
No 30
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-44 Score=340.99 Aligned_cols=307 Identities=29% Similarity=0.477 Sum_probs=245.9
Q ss_pred CCCCCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC-CCEEEEccCCCchhHHhHHHHHHHHHhcCCC------
Q 013858 117 PAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSG-RDLLGCAETGSGKTAAFTIPMIQHCVAQTPV------ 189 (435)
Q Consensus 117 ~~~~~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~-~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~------ 189 (435)
+..+..|.++.++..+++.|.++||.+|+++|...||++.+| .|++..|+||||||++|.+|++..+......
T Consensus 177 ~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~ 256 (731)
T KOG0347|consen 177 KVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSN 256 (731)
T ss_pred ccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhh
Confidence 445667999999999999999999999999999999999999 6899999999999999999999955443211
Q ss_pred --CCCCCCeEEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCC--
Q 013858 190 --GRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNT-- 265 (435)
Q Consensus 190 --~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~-- 265 (435)
.....+.+||++|||+||.|+...+..++... ++++..++||-....|.+.++..++|+|+|||+|+.++..++.
T Consensus 257 ~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t-~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l 335 (731)
T KOG0347|consen 257 TSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKT-QIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHL 335 (731)
T ss_pred HHhccCcceeEEecChHHHHHHHHHHHHHhcccc-CeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhh
Confidence 11123459999999999999999999999865 8999999999999999999999999999999999999987654
Q ss_pred -CCCCceEEEEecCCcccCCCCHHHHHHHHHhCC-----CCCeEEEEcccccHHHHH---------------------HH
Q 013858 266 -SLSRVSFVILDEADRMLDMGFEPQIREVMQNLP-----DKHQTLLFSATMPVEIEA---------------------LA 318 (435)
Q Consensus 266 -~l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~-----~~~q~i~~SATl~~~~~~---------------------~~ 318 (435)
++++++++|+||||||++.|....+..++..+. ..+|+++||||+.-.... +.
T Consensus 336 ~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lm 415 (731)
T KOG0347|consen 336 GNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLM 415 (731)
T ss_pred hhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHH
Confidence 577899999999999999998888888887775 368999999998433211 11
Q ss_pred H--HHcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHh
Q 013858 319 Q--EYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVA 396 (435)
Q Consensus 319 ~--~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~ 396 (435)
+ .|.++|..|...+.......+......++..+|-.+++-++. .-||++|||||++..+..|+-.|+.
T Consensus 416 k~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~----------ryPGrTlVF~NsId~vKRLt~~L~~ 485 (731)
T KOG0347|consen 416 KKIGFRGKPKIIDLTPQSATASTLTESLIECPPLEKDLYLYYFLT----------RYPGRTLVFCNSIDCVKRLTVLLNN 485 (731)
T ss_pred HHhCccCCCeeEecCcchhHHHHHHHHhhcCCccccceeEEEEEe----------ecCCceEEEechHHHHHHHHHHHhh
Confidence 1 123455555554433322222222222333333333333222 3467899999999999999999999
Q ss_pred CCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 397 EGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 397 ~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
.+++...+|+.|.|.+|...+++|++....||||||+-
T Consensus 486 L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVA 523 (731)
T KOG0347|consen 486 LDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVA 523 (731)
T ss_pred cCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhh
Confidence 99999999999999999999999999999999999974
No 31
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.5e-43 Score=322.76 Aligned_cols=301 Identities=38% Similarity=0.537 Sum_probs=281.8
Q ss_pred CCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEE
Q 013858 120 IESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALV 199 (435)
Q Consensus 120 ~~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~li 199 (435)
...|..++|+..+++++.+-||+.|+|+|+..||.++.+++++..+-||||||.+|++|+++.+.... ..|-++++
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s----~~g~Rali 95 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS----QTGLRALI 95 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc----ccccceee
Confidence 34599999999999999999999999999999999999999999999999999999999999987642 34789999
Q ss_pred EccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCC
Q 013858 200 LAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEAD 279 (435)
Q Consensus 200 l~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah 279 (435)
+.|||+||.|..+.++.+++.. +++..+++||....++...+..+++|+++|||+++.....-.+.|+.+.|||+|||+
T Consensus 96 lsptreLa~qtlkvvkdlgrgt-~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEad 174 (529)
T KOG0337|consen 96 LSPTRELALQTLKVVKDLGRGT-KLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEAD 174 (529)
T ss_pred ccCcHHHHHHHHHHHHHhcccc-chhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhh
Confidence 9999999999999999999887 799999999999999999999999999999999988766656889999999999999
Q ss_pred cccCCCCHHHHHHHHHhCCCCCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHH
Q 013858 280 RMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLAL 359 (435)
Q Consensus 280 ~~~~~~~~~~i~~i~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~ 359 (435)
+++.+||.+++.+++..++...|+++||||+|..+-++++.-+.+|+.+.++............+..+...+|..+|+..
T Consensus 175 rlfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~K~aaLl~i 254 (529)
T KOG0337|consen 175 RLFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAEKEAALLSI 254 (529)
T ss_pred HHHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998888888888889999999999999998
Q ss_pred HHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCC
Q 013858 360 LVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYK 433 (435)
Q Consensus 360 l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~ 433 (435)
+..... ..+++|||.+...++-+...|+..|+.+..++|.+.+..|...+..|+.++..+||.||+
T Consensus 255 l~~~~~--------~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdv 320 (529)
T KOG0337|consen 255 LGGRIK--------DKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDV 320 (529)
T ss_pred Hhcccc--------ccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehh
Confidence 877643 335999999999999999999999999999999999999999999999999999999986
No 32
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.2e-43 Score=317.07 Aligned_cols=298 Identities=35% Similarity=0.607 Sum_probs=271.5
Q ss_pred CCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEE
Q 013858 120 IESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALV 199 (435)
Q Consensus 120 ~~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~li 199 (435)
+.+|++++|++++++.++..||..|+.+|+.||..+..|.|+++.+++|+|||.+|.+++++.+... ....++++
T Consensus 25 vdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~-----~ke~qali 99 (397)
T KOG0327|consen 25 VDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMS-----VKETQALI 99 (397)
T ss_pred hhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcc-----hHHHHHHH
Confidence 3479999999999999999999999999999999999999999999999999999999999886432 22467999
Q ss_pred EccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHH-hCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecC
Q 013858 200 LAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL-RGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEA 278 (435)
Q Consensus 200 l~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEa 278 (435)
++|+|+||.|+.+++..++... ++++..+.||.+.......+ ...++|+++|||++.+.+....+....+.++|+|||
T Consensus 100 laPtreLa~qi~~v~~~lg~~~-~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEa 178 (397)
T KOG0327|consen 100 LAPTRELAQQIQKVVRALGDHM-DVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEA 178 (397)
T ss_pred hcchHHHHHHHHHHHHhhhccc-ceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecch
Confidence 9999999999999999999876 68999899988877444444 455899999999999999888777788999999999
Q ss_pred CcccCCCCHHHHHHHHHhCCCCCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHH
Q 013858 279 DRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLA 358 (435)
Q Consensus 279 h~~~~~~~~~~i~~i~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 358 (435)
+.++..||..++..+...++++.|++++|||.|.++....+.|+.+|+.+.+.........++|++..+..++|+..+..
T Consensus 179 DEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~k~~~l~d 258 (397)
T KOG0327|consen 179 DEMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEEKLDTLCD 258 (397)
T ss_pred HhhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccccccHHHH
Confidence 99999999999999999999999999999999999999999999999999999988888889999999998889888888
Q ss_pred HHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 359 LLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 359 ~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
+.... .+.+||||++..+..+...|...++.+..+||.|.+.+|..++..|+.|..+|||.|+.+
T Consensus 259 l~~~~-----------~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~ 323 (397)
T KOG0327|consen 259 LYRRV-----------TQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLL 323 (397)
T ss_pred HHHhh-----------hcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeecccc
Confidence 77621 248999999999999999999999999999999999999999999999999999999986
No 33
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=1.8e-42 Score=331.53 Aligned_cols=305 Identities=26% Similarity=0.445 Sum_probs=272.9
Q ss_pred CCCCCCCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCC
Q 013858 115 PAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDG 194 (435)
Q Consensus 115 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~ 194 (435)
..+.....|+.+.|...++..|+..+|..|+++|..|||.++.+-|+|+++..|+|||++|.+.++..+.. +...
T Consensus 19 V~~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~-----~~~~ 93 (980)
T KOG4284|consen 19 VQSNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDS-----RSSH 93 (980)
T ss_pred cccCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCc-----ccCc
Confidence 34556677999999999999999999999999999999999999999999999999999998877776544 3346
Q ss_pred CeEEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEE
Q 013858 195 PLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVI 274 (435)
Q Consensus 195 ~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iI 274 (435)
++++|++|||++|.|+.+.+.+++..+.++++..+.||+........+. .++|+|+|||++..++..+.++..+++++|
T Consensus 94 ~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk-~~rIvIGtPGRi~qL~el~~~n~s~vrlfV 172 (980)
T KOG4284|consen 94 IQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLK-QTRIVIGTPGRIAQLVELGAMNMSHVRLFV 172 (980)
T ss_pred ceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhh-hceEEecCchHHHHHHHhcCCCccceeEEE
Confidence 8899999999999999999999999889999999999998776655454 589999999999999999999999999999
Q ss_pred EecCCcccCC-CCHHHHHHHHHhCCCCCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEEEcChh---
Q 013858 275 LDEADRMLDM-GFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSEN--- 350 (435)
Q Consensus 275 iDEah~~~~~-~~~~~i~~i~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~--- 350 (435)
+||||.+++. .|...+..|+..+|..+|++++|||.|..+..++..|+.+|..+.++........++|++..++..
T Consensus 173 LDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nns 252 (980)
T KOG4284|consen 173 LDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNS 252 (980)
T ss_pred eccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcch
Confidence 9999999885 599999999999999999999999999999999999999999999999998899999998887543
Q ss_pred -----hHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCC
Q 013858 351 -----EKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGST 425 (435)
Q Consensus 351 -----~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~ 425 (435)
.|...|-+.+.. .|..+.||||+....|+.++.+|...|+.|.++.|.|+|.+|..+++.++.-.+
T Consensus 253 veemrlklq~L~~vf~~---------ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~ 323 (980)
T KOG4284|consen 253 VEEMRLKLQKLTHVFKS---------IPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRV 323 (980)
T ss_pred HHHHHHHHHHHHHHHhh---------CchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceE
Confidence 233333333333 556679999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCC
Q 013858 426 NILVFSYKL 434 (435)
Q Consensus 426 ~VLVaT~~L 434 (435)
+|||+||+.
T Consensus 324 rILVsTDLt 332 (980)
T KOG4284|consen 324 RILVSTDLT 332 (980)
T ss_pred EEEEecchh
Confidence 999999974
No 34
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=1.5e-40 Score=345.79 Aligned_cols=288 Identities=23% Similarity=0.282 Sum_probs=220.3
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhh
Q 013858 127 CLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL 206 (435)
Q Consensus 127 ~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~l 206 (435)
.+++.+.+.|+.+|+..|+++|.++|+.++.|+|+++++|||||||++|++|++..+... .++++|||+|||+|
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~------~~~~aL~l~PtraL 93 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD------PRATALYLAPTKAL 93 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC------CCcEEEEEcChHHH
Confidence 488999999999999999999999999999999999999999999999999999988653 25789999999999
Q ss_pred HHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcC----CCCCCCceEEEEecCCccc
Q 013858 207 AQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQG----NTSLSRVSFVILDEADRML 282 (435)
Q Consensus 207 a~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~----~~~l~~~~~iIiDEah~~~ 282 (435)
|.|+.+.+++++ ..++++..+.|++... +...+..+++|+|+||++|...+... ...++++++|||||||++.
T Consensus 94 a~q~~~~l~~l~--~~~i~v~~~~Gdt~~~-~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~ 170 (742)
T TIGR03817 94 AADQLRAVRELT--LRGVRPATYDGDTPTE-ERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYR 170 (742)
T ss_pred HHHHHHHHHHhc--cCCeEEEEEeCCCCHH-HHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhcc
Confidence 999999999997 2368888887877654 44556677999999999997543321 1237889999999999886
Q ss_pred CCCCHHHHHHHHH-------hCCCCCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEEEcCh------
Q 013858 283 DMGFEPQIREVMQ-------NLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSE------ 349 (435)
Q Consensus 283 ~~~~~~~i~~i~~-------~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~------ 349 (435)
+. |+..+..++. ..+.+.|+|++|||+++..+ .+..+++.++.+ +.....+..... .....+.
T Consensus 171 g~-fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~-i~~~~~~~~~~~-~~~~~p~~~~~~~ 246 (742)
T TIGR03817 171 GV-FGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVA-VTEDGSPRGART-VALWEPPLTELTG 246 (742)
T ss_pred Cc-cHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEE-ECCCCCCcCceE-EEEecCCcccccc
Confidence 63 6665444433 34567899999999987765 677788877655 333222222222 2221111
Q ss_pred -------hhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhC--------CCcEEEecCCCCHHHHH
Q 013858 350 -------NEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE--------GLHAVALHGGRNQSDRE 414 (435)
Q Consensus 350 -------~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~--------~~~v~~lh~~~~~~~R~ 414 (435)
..........+..... ...++||||++++.++.++..|+.. +..+..|||++++++|.
T Consensus 247 ~~~~~~r~~~~~~~~~~l~~l~~-------~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~ 319 (742)
T TIGR03817 247 ENGAPVRRSASAEAADLLADLVA-------EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRR 319 (742)
T ss_pred ccccccccchHHHHHHHHHHHHH-------CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHH
Confidence 0001112222222221 1246999999999999999998764 56889999999999999
Q ss_pred HHHHHHHcCCCcEEEEcCCC
Q 013858 415 SALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 415 ~~~~~f~~g~~~VLVaT~~L 434 (435)
+++++|++|+.+||||||+|
T Consensus 320 ~ie~~f~~G~i~vLVaTd~l 339 (742)
T TIGR03817 320 ELERALRDGELLGVATTNAL 339 (742)
T ss_pred HHHHHHHcCCceEEEECchH
Confidence 99999999999999999986
No 35
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=1.7e-38 Score=333.81 Aligned_cols=290 Identities=22% Similarity=0.300 Sum_probs=216.9
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEE
Q 013858 122 SFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPV-ALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 200 (435)
Q Consensus 122 ~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~-~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil 200 (435)
.|++++|++.+++.+...|+..|+|+|.++++. +..|+|+++++|||+|||++|.+|++..+.. ++++||+
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~--------~~kal~i 73 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR--------GGKALYI 73 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc--------CCcEEEE
Confidence 478899999999999999999999999999998 6789999999999999999999999988753 5789999
Q ss_pred ccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCc
Q 013858 201 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADR 280 (435)
Q Consensus 201 ~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~ 280 (435)
+|+++||.|+++.++++.. + ++++..++|+...... ....++|+|+||+++..++.+....+.++++|||||+|.
T Consensus 74 ~P~raLa~q~~~~~~~~~~-~-g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~ 148 (737)
T PRK02362 74 VPLRALASEKFEEFERFEE-L-GVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHL 148 (737)
T ss_pred eChHHHHHHHHHHHHHhhc-C-CCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccc
Confidence 9999999999999998764 2 6889999988754332 234579999999999888876555678999999999999
Q ss_pred ccCCCCHHHHHHHHHhC---CCCCeEEEEcccccHHHHHHHHHHcCCC--------eEEEeCCCCCCCCceEEEEEEcCh
Q 013858 281 MLDMGFEPQIREVMQNL---PDKHQTLLFSATMPVEIEALAQEYLTDP--------VQVKVGKVSSPTANVIQILEKVSE 349 (435)
Q Consensus 281 ~~~~~~~~~i~~i~~~~---~~~~q~i~~SATl~~~~~~~~~~~~~~~--------~~i~~~~~~~~~~~i~~~~~~~~~ 349 (435)
+.+.+++..+..++..+ .+..|+|+||||++. ..++.. |+... +.+..+...............+..
T Consensus 149 l~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n-~~~la~-wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~ 226 (737)
T PRK02362 149 IDSANRGPTLEVTLAKLRRLNPDLQVVALSATIGN-ADELAD-WLDAELVDSEWRPIDLREGVFYGGAIHFDDSQREVEV 226 (737)
T ss_pred cCCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCC-HHHHHH-HhCCCcccCCCCCCCCeeeEecCCeeccccccccCCC
Confidence 98888887777665544 567899999999975 333433 33311 111100000000000000000111
Q ss_pred hhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhC--------------------------------
Q 013858 350 NEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE-------------------------------- 397 (435)
Q Consensus 350 ~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~-------------------------------- 397 (435)
..+ ......+.+.. ..++++||||++++.|+.+++.|...
T Consensus 227 ~~~-~~~~~~~~~~~-------~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L 298 (737)
T PRK02362 227 PSK-DDTLNLVLDTL-------EEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDL 298 (737)
T ss_pred ccc-hHHHHHHHHHH-------HcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHH
Confidence 111 12222232222 23457999999999999999888643
Q ss_pred ----CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 398 ----GLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 398 ----~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
..+|+++||+|++.+|..+++.|++|.++|||||++|
T Consensus 299 ~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tl 339 (737)
T PRK02362 299 ADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTL 339 (737)
T ss_pred HHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhh
Confidence 1378999999999999999999999999999999987
No 36
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.9e-39 Score=305.65 Aligned_cols=312 Identities=32% Similarity=0.466 Sum_probs=263.6
Q ss_pred CCCCCCCCCCcccC----CCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCC
Q 013858 113 SVPAPAPIESFTDM----CLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTP 188 (435)
Q Consensus 113 ~~~~~~~~~~~~~~----~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~ 188 (435)
+..+|.++.+|.++ ..++.+++.+...+|..|+|+|++++|.++++++++.|+|||+|||++|.+|++.++.....
T Consensus 124 G~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~ 203 (593)
T KOG0344|consen 124 GFHLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQ 203 (593)
T ss_pred CCCCCCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhc
Confidence 34789999999984 68999999999999999999999999999999999999999999999999999999877543
Q ss_pred CCCCCCCeEEEEccChhhHHHHHHHHHHHh--hcCCCceEEEEECCC-CHHHHHHHHhCCCcEEEECcHHHHHHHHcCC-
Q 013858 189 VGRGDGPLALVLAPTRELAQQIEKEVKALS--RSLDSFKTAIVVGGT-NIAEQRSELRGGVSIVVATPGRFLDHLQQGN- 264 (435)
Q Consensus 189 ~~~~~~~~~lil~P~r~la~q~~~~~~~~~--~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~- 264 (435)
..+..|-+++|+.|+|+||.|+++++.++. ... .++...+.... ............++|++.||-++...+..+.
T Consensus 204 ~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t-~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~ 282 (593)
T KOG0344|consen 204 EKHKVGLRALILSPTRELAAQIYREMRKYSIDEGT-SLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKL 282 (593)
T ss_pred ccCccceEEEEecchHHHHHHHHHHHHhcCCCCCC-chhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCc
Confidence 333457899999999999999999999987 333 23333322221 1111112223347899999999999987764
Q ss_pred -CCCCCceEEEEecCCcccCC-CCHHHHHHHHHhCCC-CCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCCCCCceE
Q 013858 265 -TSLSRVSFVILDEADRMLDM-GFEPQIREVMQNLPD-KHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVI 341 (435)
Q Consensus 265 -~~l~~~~~iIiDEah~~~~~-~~~~~i~~i~~~~~~-~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~ 341 (435)
..+..+.++|+||||++++. .|..++..|+..+.. +..+=+||||++..+++.++....+++.+.++..+.....+.
T Consensus 283 ~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~ 362 (593)
T KOG0344|consen 283 NIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVD 362 (593)
T ss_pred cchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhh
Confidence 67899999999999999998 899999999988754 566778999999999999999999999999999888888888
Q ss_pred EEEEEc-ChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHH-HhCCCcEEEecCCCCHHHHHHHHHH
Q 013858 342 QILEKV-SENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEAL-VAEGLHAVALHGGRNQSDRESALRD 419 (435)
Q Consensus 342 ~~~~~~-~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L-~~~~~~v~~lh~~~~~~~R~~~~~~ 419 (435)
|....+ +...|+-.+.+.+.. +-.+++|||+.+.+.|.+|...| .-.++++.++||+.++.+|++++++
T Consensus 363 QelvF~gse~~K~lA~rq~v~~---------g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~ 433 (593)
T KOG0344|consen 363 QELVFCGSEKGKLLALRQLVAS---------GFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMER 433 (593)
T ss_pred hhheeeecchhHHHHHHHHHhc---------cCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHH
Confidence 887776 567787777777765 45567999999999999999999 6678999999999999999999999
Q ss_pred HHcCCCcEEEEcCCC
Q 013858 420 FRNGSTNILVFSYKL 434 (435)
Q Consensus 420 f~~g~~~VLVaT~~L 434 (435)
|+.|+++|||||++|
T Consensus 434 FR~g~IwvLicTdll 448 (593)
T KOG0344|consen 434 FRIGKIWVLICTDLL 448 (593)
T ss_pred HhccCeeEEEehhhh
Confidence 999999999999987
No 37
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=9.7e-38 Score=327.25 Aligned_cols=291 Identities=21% Similarity=0.278 Sum_probs=222.2
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEE
Q 013858 122 SFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPV-ALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 200 (435)
Q Consensus 122 ~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~-~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil 200 (435)
.|+++++++.+.+.++.+|+..|+|+|.++++. ++.|+|+++++|||||||++|.+|++..+... ++++||+
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~-------~~~~l~l 74 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE-------GGKAVYL 74 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc-------CCeEEEE
Confidence 477889999999999999999999999999986 78999999999999999999999999887642 5789999
Q ss_pred ccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCc
Q 013858 201 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADR 280 (435)
Q Consensus 201 ~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~ 280 (435)
+|+++|+.|+++.++.+.. . ++++..++|+...... ....++|+|+||+++..++.+....++++++|||||+|.
T Consensus 75 ~P~~aLa~q~~~~~~~~~~-~-g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~ 149 (720)
T PRK00254 75 VPLKALAEEKYREFKDWEK-L-GLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHL 149 (720)
T ss_pred eChHHHHHHHHHHHHHHhh-c-CCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCc
Confidence 9999999999999988753 3 6889999998764432 235689999999999888876656788999999999999
Q ss_pred ccCCCCHHHHHHHHHhCCCCCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCCCCC-ce-EEEEEEcChh--hH-HHH
Q 013858 281 MLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTA-NV-IQILEKVSEN--EK-VDR 355 (435)
Q Consensus 281 ~~~~~~~~~i~~i~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~i-~~~~~~~~~~--~k-~~~ 355 (435)
+.+.+++..+..++..+....|+|++|||++. ..+++. |+....... .....+.. .+ .+.+...... .+ ...
T Consensus 150 l~~~~rg~~le~il~~l~~~~qiI~lSATl~n-~~~la~-wl~~~~~~~-~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~ 226 (720)
T PRK00254 150 IGSYDRGATLEMILTHMLGRAQILGLSATVGN-AEELAE-WLNAELVVS-DWRPVKLRKGVFYQGFLFWEDGKIERFPNS 226 (720)
T ss_pred cCCccchHHHHHHHHhcCcCCcEEEEEccCCC-HHHHHH-HhCCccccC-CCCCCcceeeEecCCeeeccCcchhcchHH
Confidence 98888999999999999889999999999975 344554 554332111 11111110 00 0111111111 11 112
Q ss_pred HHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhC---------------------------------CCcEE
Q 013858 356 LLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE---------------------------------GLHAV 402 (435)
Q Consensus 356 l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~---------------------------------~~~v~ 402 (435)
+...+.+... .++++||||++++.|+.++..|... ..+|.
T Consensus 227 ~~~~~~~~i~-------~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~ 299 (720)
T PRK00254 227 WESLVYDAVK-------KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVA 299 (720)
T ss_pred HHHHHHHHHH-------hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEE
Confidence 2222222221 2346999999999999888766321 23699
Q ss_pred EecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 403 ALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 403 ~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
++||+|++++|..+++.|++|..+|||||++|
T Consensus 300 ~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tL 331 (720)
T PRK00254 300 FHHAGLGRTERVLIEDAFREGLIKVITATPTL 331 (720)
T ss_pred EeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHH
Confidence 99999999999999999999999999999986
No 38
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=6.6e-37 Score=313.09 Aligned_cols=274 Identities=18% Similarity=0.193 Sum_probs=214.4
Q ss_pred CCCCCCcHHHHHHHHHHhcCC-CEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEE-EccChhhHHHHHHHHHH
Q 013858 139 HEYTRPTSIQAQAMPVALSGR-DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALV-LAPTRELAQQIEKEVKA 216 (435)
Q Consensus 139 ~~~~~p~~~Q~~~i~~~~~~~-~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~li-l~P~r~la~q~~~~~~~ 216 (435)
.||. |+|||.++++.++.|+ ++++++|||||||.++.++.+.. .. ....++.|| ++|||+||.|+++.+.+
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~-----~~~~~~rLv~~vPtReLa~Qi~~~~~~ 84 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EI-----GAKVPRRLVYVVNRRTVVDQVTEEAEK 84 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-cc-----cccccceEEEeCchHHHHHHHHHHHHH
Confidence 4777 9999999999999998 58888999999998765444422 11 122455555 66999999999999999
Q ss_pred HhhcCC----------------------CceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCC---------
Q 013858 217 LSRSLD----------------------SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNT--------- 265 (435)
Q Consensus 217 ~~~~~~----------------------~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~--------- 265 (435)
+++.++ .+++..++||.....+...+..+++|+|+|++.+ .++.+
T Consensus 85 ~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i----~sr~L~~gYg~~~~ 160 (844)
T TIGR02621 85 IGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMI----GSRLLFSGYGCGFK 160 (844)
T ss_pred HHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHH----cCCccccccccccc
Confidence 997652 4889999999999999999999999999996544 33332
Q ss_pred -------CCCCceEEEEecCCcccCCCCHHHHHHHHHhC--CC---CCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCC
Q 013858 266 -------SLSRVSFVILDEADRMLDMGFEPQIREVMQNL--PD---KHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKV 333 (435)
Q Consensus 266 -------~l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~--~~---~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~ 333 (435)
.+.++++||||||| ++++|...+..|+..+ ++ ++|+++||||++.++..+...++.++..+.+...
T Consensus 161 ~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~ 238 (844)
T TIGR02621 161 SRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKK 238 (844)
T ss_pred cccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecccc
Confidence 26889999999999 6789999999999964 33 2799999999999888888888877776666544
Q ss_pred CCCCCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHH
Q 013858 334 SSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDR 413 (435)
Q Consensus 334 ~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R 413 (435)
......+.++ ..+....|...++..+..... ..++++|||||+++.|+.+++.|++.++ ..+||+|++.+|
T Consensus 239 ~l~a~ki~q~-v~v~~e~Kl~~lv~~L~~ll~------e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR 309 (844)
T TIGR02621 239 RLAAKKIVKL-VPPSDEKFLSTMVKELNLLMK------DSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAER 309 (844)
T ss_pred cccccceEEE-EecChHHHHHHHHHHHHHHHh------hCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHH
Confidence 4333445553 444555566555555443321 2345799999999999999999998876 899999999999
Q ss_pred H-----HHHHHHHc----CC-------CcEEEEcCCC
Q 013858 414 E-----SALRDFRN----GS-------TNILVFSYKL 434 (435)
Q Consensus 414 ~-----~~~~~f~~----g~-------~~VLVaT~~L 434 (435)
. .+++.|++ |+ .+|||||+++
T Consensus 310 ~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVa 346 (844)
T TIGR02621 310 DDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAG 346 (844)
T ss_pred hhHHHHHHHHHHhccccccccccccccceEEeccchh
Confidence 9 88999987 54 6899999975
No 39
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=7.8e-37 Score=324.17 Aligned_cols=297 Identities=21% Similarity=0.247 Sum_probs=213.9
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCC-CCCCCeEEEEccChhh
Q 013858 128 LHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVG-RGDGPLALVLAPTREL 206 (435)
Q Consensus 128 l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~-~~~~~~~lil~P~r~l 206 (435)
+++.+.+.+.. +|..|+|+|.++|+.++.|+|+++++|||||||++|.+|++..+....... ...++++||++|+++|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 56666666555 789999999999999999999999999999999999999999877543211 1346789999999999
Q ss_pred HHHHHHHHHH-------Hh----hcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCC--CCCCceEE
Q 013858 207 AQQIEKEVKA-------LS----RSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNT--SLSRVSFV 273 (435)
Q Consensus 207 a~q~~~~~~~-------~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~--~l~~~~~i 273 (435)
+.|+++.+.+ ++ ...+++++..++|++........+.+.++|+|+||++|..++....+ .+.++++|
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~V 176 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWV 176 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEE
Confidence 9999886643 22 23336788999999988887777778899999999999877654332 47899999
Q ss_pred EEecCCcccCCCCHHHHH----HHHHhCCCCCeEEEEcccccHHHHHHHHHHcC-------CCeEEEeCCCCCCCCceEE
Q 013858 274 ILDEADRMLDMGFEPQIR----EVMQNLPDKHQTLLFSATMPVEIEALAQEYLT-------DPVQVKVGKVSSPTANVIQ 342 (435)
Q Consensus 274 IiDEah~~~~~~~~~~i~----~i~~~~~~~~q~i~~SATl~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~i~~ 342 (435)
||||||.+.+..++..+. .+....+...|+|++|||+++ ....++.... .+..+.... ......+..
T Consensus 177 VIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~-~~~va~~L~~~~~~~~~r~~~iv~~~-~~k~~~i~v 254 (876)
T PRK13767 177 IVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEP-LEEVAKFLVGYEDDGEPRDCEIVDAR-FVKPFDIKV 254 (876)
T ss_pred EEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCC-HHHHHHHhcCccccCCCCceEEEccC-CCccceEEE
Confidence 999999998766555443 333334467899999999975 2333333221 122222111 111111111
Q ss_pred EE-----EEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhC------CCcEEEecCCCCHH
Q 013858 343 IL-----EKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE------GLHAVALHGGRNQS 411 (435)
Q Consensus 343 ~~-----~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~------~~~v~~lh~~~~~~ 411 (435)
.. ...........+...+.+.... .+++|||||++..|+.++..|+.. +..+..+||+++++
T Consensus 255 ~~p~~~l~~~~~~~~~~~l~~~L~~~i~~-------~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~ 327 (876)
T PRK13767 255 ISPVDDLIHTPAEEISEALYETLHELIKE-------HRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSRE 327 (876)
T ss_pred eccCccccccccchhHHHHHHHHHHHHhc-------CCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHH
Confidence 00 0011122223344444443322 246999999999999999999873 46899999999999
Q ss_pred HHHHHHHHHHcCCCcEEEEcCCC
Q 013858 412 DRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 412 ~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
+|..+++.|++|+.+|||||++|
T Consensus 328 ~R~~ve~~fk~G~i~vLVaTs~L 350 (876)
T PRK13767 328 VRLEVEEKLKRGELKVVVSSTSL 350 (876)
T ss_pred HHHHHHHHHHcCCCeEEEECChH
Confidence 99999999999999999999986
No 40
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1e-36 Score=304.92 Aligned_cols=269 Identities=17% Similarity=0.298 Sum_probs=202.1
Q ss_pred HHCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHH
Q 013858 137 EFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 216 (435)
Q Consensus 137 ~~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~ 216 (435)
..+||..|+|+|.++|+.++.|+|+++++|||+|||++|++|++.. ++.+||++|+++|+.|+.+.++.
T Consensus 5 ~~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~-----------~~~~lVi~P~~~L~~dq~~~l~~ 73 (470)
T TIGR00614 5 TVFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS-----------DGITLVISPLISLMEDQVLQLKA 73 (470)
T ss_pred hhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc-----------CCcEEEEecHHHHHHHHHHHHHH
Confidence 4579999999999999999999999999999999999999998753 45799999999999999888776
Q ss_pred HhhcCCCceEEEEECCCCHHHHHHH----HhCCCcEEEECcHHHHHHH-HcCCC-CCCCceEEEEecCCcccCCC--CHH
Q 013858 217 LSRSLDSFKTAIVVGGTNIAEQRSE----LRGGVSIVVATPGRFLDHL-QQGNT-SLSRVSFVILDEADRMLDMG--FEP 288 (435)
Q Consensus 217 ~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~I~v~T~~~l~~~l-~~~~~-~l~~~~~iIiDEah~~~~~~--~~~ 288 (435)
+ ++.+..+.++....+.... .....+|+|+||+++.... ....+ ...++++|||||||++.+|| |..
T Consensus 74 ~-----gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~ 148 (470)
T TIGR00614 74 S-----GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRP 148 (470)
T ss_pred c-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHH
Confidence 4 4677777777765543221 2345799999999975321 11112 46789999999999999887 666
Q ss_pred HHHHH---HHhCCCCCeEEEEcccccHHHHHHHHHHcC--CCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHHHHHH
Q 013858 289 QIREV---MQNLPDKHQTLLFSATMPVEIEALAQEYLT--DPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEE 363 (435)
Q Consensus 289 ~i~~i---~~~~~~~~q~i~~SATl~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~ 363 (435)
.+..+ ...+ ++.+++++|||+++.+...+...+. ++..+... .. .+++....... .......+...+.+.
T Consensus 149 ~~~~l~~l~~~~-~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s-~~--r~nl~~~v~~~-~~~~~~~l~~~l~~~ 223 (470)
T TIGR00614 149 DYKALGSLKQKF-PNVPIMALTATASPSVREDILRQLNLKNPQIFCTS-FD--RPNLYYEVRRK-TPKILEDLLRFIRKE 223 (470)
T ss_pred HHHHHHHHHHHc-CCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCC-CC--CCCcEEEEEeC-CccHHHHHHHHHHHh
Confidence 55543 3344 5678999999999988766655543 44443222 11 22232222221 113344444444331
Q ss_pred HHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 364 AFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 364 ~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
.++..+||||+++++++.++..|+..|+.+..+||+|++.+|..+++.|++|+.+|||||+++
T Consensus 224 --------~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~ 286 (470)
T TIGR00614 224 --------FKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAF 286 (470)
T ss_pred --------cCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechh
Confidence 334457999999999999999999999999999999999999999999999999999999976
No 41
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=2e-36 Score=313.92 Aligned_cols=280 Identities=18% Similarity=0.255 Sum_probs=208.3
Q ss_pred CCCCHHHHHHHH-HCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccCh
Q 013858 126 MCLHPSIMKDIE-FHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTR 204 (435)
Q Consensus 126 ~~l~~~l~~~l~-~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r 204 (435)
++....+...++ .+|+..++|+|.++|+.++.|+|+++++|||+|||++|++|++.. ++.+|||+|++
T Consensus 442 fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~-----------~GiTLVISPLi 510 (1195)
T PLN03137 442 FPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC-----------PGITLVISPLV 510 (1195)
T ss_pred CCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc-----------CCcEEEEeCHH
Confidence 455566666654 479999999999999999999999999999999999999999864 46799999999
Q ss_pred hhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHh------CCCcEEEECcHHHHH--HHHcC---CCCCCCceEE
Q 013858 205 ELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELR------GGVSIVVATPGRFLD--HLQQG---NTSLSRVSFV 273 (435)
Q Consensus 205 ~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------~~~~I~v~T~~~l~~--~l~~~---~~~l~~~~~i 273 (435)
+|+.++...+... ++....+.++....++...+. ...+|+|+||++|.. .+... ......+.+|
T Consensus 511 SLmqDQV~~L~~~-----GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslI 585 (1195)
T PLN03137 511 SLIQDQIMNLLQA-----NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARF 585 (1195)
T ss_pred HHHHHHHHHHHhC-----CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhcccccee
Confidence 9988654444332 688889999988776554332 468999999999852 11111 1123458999
Q ss_pred EEecCCcccCCC--CHHHHHHH--HHhCCCCCeEEEEcccccHHHHHHHHHHcC--CCeEEEeCCCCCCCCceEEEEEEc
Q 013858 274 ILDEADRMLDMG--FEPQIREV--MQNLPDKHQTLLFSATMPVEIEALAQEYLT--DPVQVKVGKVSSPTANVIQILEKV 347 (435)
Q Consensus 274 IiDEah~~~~~~--~~~~i~~i--~~~~~~~~q~i~~SATl~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~i~~~~~~~ 347 (435)
||||||++++|| |++.+..+ +....+..+++++|||++..+...+...+. ++..+ .... ..+++...+ +
T Consensus 586 VIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vf-r~Sf--~RpNL~y~V--v 660 (1195)
T PLN03137 586 VIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVF-RQSF--NRPNLWYSV--V 660 (1195)
T ss_pred ccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEe-eccc--CccceEEEE--e
Confidence 999999999987 77776653 334445678999999999988876666554 23222 2211 223332222 2
Q ss_pred Chhh-HHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCc
Q 013858 348 SENE-KVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTN 426 (435)
Q Consensus 348 ~~~~-k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~ 426 (435)
.... ....+...+... ......||||+++++|+.+++.|+..|+.+..|||+|++++|..+++.|+.|+.+
T Consensus 661 ~k~kk~le~L~~~I~~~--------~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~ 732 (1195)
T PLN03137 661 PKTKKCLEDIDKFIKEN--------HFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEIN 732 (1195)
T ss_pred ccchhHHHHHHHHHHhc--------ccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCc
Confidence 2222 223333333221 2334589999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCC
Q 013858 427 ILVFSYKL 434 (435)
Q Consensus 427 VLVaT~~L 434 (435)
|||||+++
T Consensus 733 VLVATdAF 740 (1195)
T PLN03137 733 IICATVAF 740 (1195)
T ss_pred EEEEechh
Confidence 99999986
No 42
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.1e-37 Score=286.32 Aligned_cols=291 Identities=28% Similarity=0.390 Sum_probs=227.9
Q ss_pred HHHHHHHHCCCCCCcHHHHHHHHHHh---------cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEc
Q 013858 131 SIMKDIEFHEYTRPTSIQAQAMPVAL---------SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 201 (435)
Q Consensus 131 ~l~~~l~~~~~~~p~~~Q~~~i~~~~---------~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~ 201 (435)
.+.+.+.++++.+..|+|.+.+|+++ .++|+++.||||||||++|.+|+++.+..+. -+.-+++||+
T Consensus 147 ~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~----v~~LRavViv 222 (620)
T KOG0350|consen 147 TIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRP----VKRLRAVVIV 222 (620)
T ss_pred HHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCC----ccceEEEEEe
Confidence 34455999999999999999999996 2579999999999999999999999876642 1236899999
Q ss_pred cChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCC-----CcEEEECcHHHHHHHHc-CCCCCCCceEEEE
Q 013858 202 PTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGG-----VSIVVATPGRFLDHLQQ-GNTSLSRVSFVIL 275 (435)
Q Consensus 202 P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~~I~v~T~~~l~~~l~~-~~~~l~~~~~iIi 275 (435)
|+++|+.|+++.|.+++... ++.++.+.|.....+....+.+. .+|+|+|||+|.+++.. ..+.|++++|+||
T Consensus 223 Ptr~L~~QV~~~f~~~~~~t-gL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVI 301 (620)
T KOG0350|consen 223 PTRELALQVYDTFKRLNSGT-GLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVI 301 (620)
T ss_pred eHHHHHHHHHHHHHHhccCC-ceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEe
Confidence 99999999999999999886 79999999988888777777533 38999999999999984 5789999999999
Q ss_pred ecCCcccCCCCHHHHHHHHHhC----------------------------------CCCCeEEEEcccccHHHHHHHHHH
Q 013858 276 DEADRMLDMGFEPQIREVMQNL----------------------------------PDKHQTLLFSATMPVEIEALAQEY 321 (435)
Q Consensus 276 DEah~~~~~~~~~~i~~i~~~~----------------------------------~~~~q~i~~SATl~~~~~~~~~~~ 321 (435)
|||||+++..|...+-.++..+ .+..+.+.+|||+...-..+..--
T Consensus 302 DEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~ 381 (620)
T KOG0350|consen 302 DEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLT 381 (620)
T ss_pred chHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhh
Confidence 9999998865544333332221 223456888999876666666666
Q ss_pred cCCCeEEEeCC----CCCCCCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHH--
Q 013858 322 LTDPVQVKVGK----VSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALV-- 395 (435)
Q Consensus 322 ~~~~~~i~~~~----~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~-- 395 (435)
+..|-.+.+.. .......+.+.+......-|..++...+... ...++|+|+++...+..++..|+
T Consensus 382 l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~---------k~~r~lcf~~S~~sa~Rl~~~L~v~ 452 (620)
T KOG0350|consen 382 LHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSN---------KLNRTLCFVNSVSSANRLAHVLKVE 452 (620)
T ss_pred cCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHh---------hcceEEEEecchHHHHHHHHHHHHH
Confidence 66775554432 2223334444555555556677777776553 23459999999999999999997
Q ss_pred --hCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCCC
Q 013858 396 --AEGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYKLL 435 (435)
Q Consensus 396 --~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L~ 435 (435)
.....+..+.|++.+..|...+++|..|+.+||||+|+|.
T Consensus 453 ~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~la 494 (620)
T KOG0350|consen 453 FCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALA 494 (620)
T ss_pred hccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhh
Confidence 2356777799999999999999999999999999999873
No 43
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=2.9e-36 Score=314.79 Aligned_cols=286 Identities=18% Similarity=0.234 Sum_probs=215.3
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEc
Q 013858 122 SFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 201 (435)
Q Consensus 122 ~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~ 201 (435)
.|.+++|++.+.+.+...++. ++++|.++++.+..|+++++++|||||||+++.++++..+.. +++++|++
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~--------~~k~v~i~ 72 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA--------GLKSIYIV 72 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh--------CCcEEEEe
Confidence 467889999999999999987 999999999999999999999999999999999998887654 46799999
Q ss_pred cChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcc
Q 013858 202 PTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRM 281 (435)
Q Consensus 202 P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~ 281 (435)
|+++||.|+++.++++.. . ++++...+|+...... ....++|+|+||+++..++.+....+.++++|||||||++
T Consensus 73 P~raLa~q~~~~~~~l~~-~-g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l 147 (674)
T PRK01172 73 PLRSLAMEKYEELSRLRS-L-GMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHII 147 (674)
T ss_pred chHHHHHHHHHHHHHHhh-c-CCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhc
Confidence 999999999999988753 2 6788888887654322 2345799999999998888776666889999999999999
Q ss_pred cCCCCHHHHHHHHH---hCCCCCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEE-----EcChhhH-
Q 013858 282 LDMGFEPQIREVMQ---NLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILE-----KVSENEK- 352 (435)
Q Consensus 282 ~~~~~~~~i~~i~~---~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~-----~~~~~~k- 352 (435)
.+.+++..+..++. .++++.|+|+||||++. ..++.+ |+..... ..... ...+..... ......+
T Consensus 148 ~d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n-~~~la~-wl~~~~~-~~~~r---~vpl~~~i~~~~~~~~~~~~~~ 221 (674)
T PRK01172 148 GDEDRGPTLETVLSSARYVNPDARILALSATVSN-ANELAQ-WLNASLI-KSNFR---PVPLKLGILYRKRLILDGYERS 221 (674)
T ss_pred cCCCccHHHHHHHHHHHhcCcCCcEEEEeCccCC-HHHHHH-HhCCCcc-CCCCC---CCCeEEEEEecCeeeecccccc
Confidence 88777766666544 45678899999999975 344544 4432221 11111 111111111 0111111
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhC-------------------------CCcEEEecCC
Q 013858 353 VDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE-------------------------GLHAVALHGG 407 (435)
Q Consensus 353 ~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~-------------------------~~~v~~lh~~ 407 (435)
...+...+.+.. ..++++||||++++.|+.++..|.+. ..++.++||+
T Consensus 222 ~~~~~~~i~~~~-------~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hag 294 (674)
T PRK01172 222 QVDINSLIKETV-------NDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAG 294 (674)
T ss_pred cccHHHHHHHHH-------hCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCC
Confidence 111223333322 23457999999999999999998653 1358899999
Q ss_pred CCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 408 RNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 408 ~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
|++++|..+++.|++|..+|||||++|
T Consensus 295 l~~~eR~~ve~~f~~g~i~VLvaT~~l 321 (674)
T PRK01172 295 LSNEQRRFIEEMFRNRYIKVIVATPTL 321 (674)
T ss_pred CCHHHHHHHHHHHHcCCCeEEEecchh
Confidence 999999999999999999999999986
No 44
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=1.9e-35 Score=303.40 Aligned_cols=275 Identities=19% Similarity=0.283 Sum_probs=204.6
Q ss_pred CHHHHHHHHH-CCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhH
Q 013858 129 HPSIMKDIEF-HEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELA 207 (435)
Q Consensus 129 ~~~l~~~l~~-~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la 207 (435)
+....+.|+. +||..|+|+|.++|+.++.|+|+++++|||+|||++|++|++.. ++.+||++|+++|+
T Consensus 10 ~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~-----------~g~tlVisPl~sL~ 78 (607)
T PRK11057 10 ESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL-----------DGLTLVVSPLISLM 78 (607)
T ss_pred hhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc-----------CCCEEEEecHHHHH
Confidence 3334444533 69999999999999999999999999999999999999998854 35699999999999
Q ss_pred HHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHH---H-hCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccC
Q 013858 208 QQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSE---L-RGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLD 283 (435)
Q Consensus 208 ~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~ 283 (435)
.|+.+.++.+ ++....+.++......... . ....+++|+||++|........+...++++|||||||++.+
T Consensus 79 ~dqv~~l~~~-----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~ 153 (607)
T PRK11057 79 KDQVDQLLAN-----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQ 153 (607)
T ss_pred HHHHHHHHHc-----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCcccccc
Confidence 9998888765 4667777777665543322 2 24578999999999743222234456799999999999998
Q ss_pred CC--CHHHHHHH---HHhCCCCCeEEEEcccccHHHHHHHHHHc--CCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHH
Q 013858 284 MG--FEPQIREV---MQNLPDKHQTLLFSATMPVEIEALAQEYL--TDPVQVKVGKVSSPTANVIQILEKVSENEKVDRL 356 (435)
Q Consensus 284 ~~--~~~~i~~i---~~~~~~~~q~i~~SATl~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l 356 (435)
+| |.+.+..+ ...+ +..+++++|||+++.....+...+ .+|... ...... +++.. ..+....+...+
T Consensus 154 ~G~~fr~~y~~L~~l~~~~-p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~-~~~~~r--~nl~~--~v~~~~~~~~~l 227 (607)
T PRK11057 154 WGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQ-ISSFDR--PNIRY--TLVEKFKPLDQL 227 (607)
T ss_pred ccCcccHHHHHHHHHHHhC-CCCcEEEEecCCChhHHHHHHHHhCCCCeEEE-ECCCCC--Cccee--eeeeccchHHHH
Confidence 77 66554433 3344 467899999999988766544443 344333 222222 22222 222223334444
Q ss_pred HHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 357 LALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 357 ~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
...+.. ..+.++||||+++++|+.+++.|+..|+.+..+||+|++++|..+++.|+.|+.+|||||+++
T Consensus 228 ~~~l~~---------~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~ 296 (607)
T PRK11057 228 MRYVQE---------QRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAF 296 (607)
T ss_pred HHHHHh---------cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechh
Confidence 444432 344579999999999999999999999999999999999999999999999999999999986
No 45
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=7e-36 Score=303.98 Aligned_cols=296 Identities=22% Similarity=0.258 Sum_probs=229.5
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhh
Q 013858 127 CLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL 206 (435)
Q Consensus 127 ~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~l 206 (435)
-|++.+.+.++.. |..||+.|.++||.+..|+|++++||||||||+++.+|+|..+...+......+-.+|||+|.|+|
T Consensus 7 ~l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkAL 85 (814)
T COG1201 7 ILDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKAL 85 (814)
T ss_pred hcCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHH
Confidence 3788888888888 999999999999999999999999999999999999999999988742223346789999999999
Q ss_pred HHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCC--CCCCCceEEEEecCCcccCC
Q 013858 207 AQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGN--TSLSRVSFVILDEADRMLDM 284 (435)
Q Consensus 207 a~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~--~~l~~~~~iIiDEah~~~~~ 284 (435)
.+.+.+.+...+..+ ++.+...+|++...+......+.+||+++||+.|.-++.... -.|.++++|||||+|.+.+.
T Consensus 86 n~Di~~rL~~~~~~~-G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~s 164 (814)
T COG1201 86 NNDIRRRLEEPLREL-GIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAES 164 (814)
T ss_pred HHHHHHHHHHHHHHc-CCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhcc
Confidence 999999999999887 799999999999998888889999999999999976665432 35889999999999987765
Q ss_pred CCHHHH----HHHHHhCCCCCeEEEEcccccHHHHHHHHHHcCC--CeEEEeCCCCCCCCceEEEEEEcC---hhhHHHH
Q 013858 285 GFEPQI----REVMQNLPDKHQTLLFSATMPVEIEALAQEYLTD--PVQVKVGKVSSPTANVIQILEKVS---ENEKVDR 355 (435)
Q Consensus 285 ~~~~~i----~~i~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~i~~~~~~~~---~~~k~~~ 355 (435)
..+.++ .++....+ +.|.|++|||..+ ....++..... +..+....... ...+.-...... ...-...
T Consensus 165 KRG~~Lsl~LeRL~~l~~-~~qRIGLSATV~~-~~~varfL~g~~~~~~Iv~~~~~k-~~~i~v~~p~~~~~~~~~~~~~ 241 (814)
T COG1201 165 KRGVQLALSLERLRELAG-DFQRIGLSATVGP-PEEVAKFLVGFGDPCEIVDVSAAK-KLEIKVISPVEDLIYDEELWAA 241 (814)
T ss_pred ccchhhhhhHHHHHhhCc-ccEEEeehhccCC-HHHHHHHhcCCCCceEEEEcccCC-cceEEEEecCCccccccchhHH
Confidence 544433 33333333 8999999999963 33344444443 44443322221 112111111111 0122344
Q ss_pred HHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCC-CcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 356 LLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEG-LHAVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 356 l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~-~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
+++.+.+....++ .+|||+||+..++.++..|++.+ ..+..+||.++.++|..+.++|++|+++++|||+.|
T Consensus 242 ~~~~i~~~v~~~~-------ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSL 314 (814)
T COG1201 242 LYERIAELVKKHR-------TTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSL 314 (814)
T ss_pred HHHHHHHHHhhcC-------cEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccch
Confidence 5555555554443 39999999999999999999986 899999999999999999999999999999999976
No 46
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=6.6e-35 Score=300.18 Aligned_cols=266 Identities=22% Similarity=0.352 Sum_probs=205.4
Q ss_pred HCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHH
Q 013858 138 FHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (435)
Q Consensus 138 ~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~ 217 (435)
.+||..++++|.++|+.+++|+|+++++|||+|||++|++|++.. ++.++|++|+++|+.|+.+.++.+
T Consensus 8 ~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~-----------~g~~lVisPl~sL~~dq~~~l~~~ 76 (591)
T TIGR01389 8 TFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL-----------KGLTVVISPLISLMKDQVDQLRAA 76 (591)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc-----------CCcEEEEcCCHHHHHHHHHHHHHc
Confidence 489999999999999999999999999999999999999998753 356899999999999998888775
Q ss_pred hhcCCCceEEEEECCCCHHHHHHH----HhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCC--CHHHHH
Q 013858 218 SRSLDSFKTAIVVGGTNIAEQRSE----LRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG--FEPQIR 291 (435)
Q Consensus 218 ~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~--~~~~i~ 291 (435)
++.+..+.++....+.... ..+..+|+++||++|........+...++++|||||||++.++| |.+.+.
T Consensus 77 -----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~ 151 (591)
T TIGR01389 77 -----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQ 151 (591)
T ss_pred -----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHH
Confidence 4667777777765543322 23568999999999965443334556789999999999999876 666555
Q ss_pred HH---HHhCCCCCeEEEEcccccHHHHHHHHHHcC--CCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHHHHHHHHh
Q 013858 292 EV---MQNLPDKHQTLLFSATMPVEIEALAQEYLT--DPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFL 366 (435)
Q Consensus 292 ~i---~~~~~~~~q~i~~SATl~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~ 366 (435)
.+ ...++. .+++++|||+++.+...+..++. ++..+ .... ...++. +.......+...+.+.+..
T Consensus 152 ~l~~l~~~~~~-~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~-~~~~--~r~nl~--~~v~~~~~~~~~l~~~l~~---- 221 (591)
T TIGR01389 152 RLGSLAERFPQ-VPRIALTATADAETRQDIRELLRLADANEF-ITSF--DRPNLR--FSVVKKNNKQKFLLDYLKK---- 221 (591)
T ss_pred HHHHHHHhCCC-CCEEEEEeCCCHHHHHHHHHHcCCCCCCeE-ecCC--CCCCcE--EEEEeCCCHHHHHHHHHHh----
Confidence 44 344443 45999999999988877776664 33322 2211 122222 2222334455556555543
Q ss_pred hhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 367 AEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 367 ~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
..+.++||||++++.++.+++.|+..|+.+..+||+|++++|..+++.|.+|+.+|||||+++
T Consensus 222 -----~~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~ 284 (591)
T TIGR01389 222 -----HRGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAF 284 (591)
T ss_pred -----cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechh
Confidence 224569999999999999999999999999999999999999999999999999999999986
No 47
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=7.4e-34 Score=298.64 Aligned_cols=274 Identities=18% Similarity=0.208 Sum_probs=208.0
Q ss_pred CCHHHHHHH-HHCCCCCCcHHHHHHHHHHhcC------CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEE
Q 013858 128 LHPSIMKDI-EFHEYTRPTSIQAQAMPVALSG------RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 200 (435)
Q Consensus 128 l~~~l~~~l-~~~~~~~p~~~Q~~~i~~~~~~------~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil 200 (435)
.+..+.+.+ ..++| .|+++|.++|+.++.+ .|++++|+||+|||.+|++|++..+.. +++++|+
T Consensus 436 ~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~--------g~qvlvL 506 (926)
T TIGR00580 436 PDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD--------GKQVAVL 506 (926)
T ss_pred CCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh--------CCeEEEE
Confidence 344555555 44677 5999999999999874 689999999999999999999887654 5789999
Q ss_pred ccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHH---HHh-CCCcEEEECcHHHHHHHHcCCCCCCCceEEEEe
Q 013858 201 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRS---ELR-GGVSIVVATPGRFLDHLQQGNTSLSRVSFVILD 276 (435)
Q Consensus 201 ~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~-~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiD 276 (435)
+||++||.|+++.+++++..+ ++++..+.|+....+... .+. +.++|+|+||..+ ...+.+.++++||||
T Consensus 507 vPT~~LA~Q~~~~f~~~~~~~-~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll-----~~~v~f~~L~llVID 580 (926)
T TIGR00580 507 VPTTLLAQQHFETFKERFANF-PVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL-----QKDVKFKDLGLLIID 580 (926)
T ss_pred eCcHHHHHHHHHHHHHHhccC-CcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh-----hCCCCcccCCEEEee
Confidence 999999999999999987766 588888888876544332 233 3589999999432 346678999999999
Q ss_pred cCCcccCCCCHHHHHHHHHhCCCCCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHH
Q 013858 277 EADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRL 356 (435)
Q Consensus 277 Eah~~~~~~~~~~i~~i~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l 356 (435)
|+|++ +......+..+++..|+++||||+.+....+......++..+...... ...+..++..... ..+
T Consensus 581 Eahrf-----gv~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~--R~~V~t~v~~~~~----~~i 649 (926)
T TIGR00580 581 EEQRF-----GVKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPED--RLPVRTFVMEYDP----ELV 649 (926)
T ss_pred ccccc-----chhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCC--ccceEEEEEecCH----HHH
Confidence 99984 334455666677788999999998776655555555566665543322 2234444433322 112
Q ss_pred HHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhC--CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 357 LALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE--GLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 357 ~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~--~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
...+.+.. ..+++++|||+++++++.+++.|++. ++.+..+||+|++.+|..++++|++|+.+|||||+++
T Consensus 650 ~~~i~~el-------~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~ii 722 (926)
T TIGR00580 650 REAIRREL-------LRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTII 722 (926)
T ss_pred HHHHHHHH-------HcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChh
Confidence 22222222 22457999999999999999999985 7899999999999999999999999999999999985
No 48
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=6.6e-34 Score=305.13 Aligned_cols=272 Identities=19% Similarity=0.195 Sum_probs=211.1
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHHHhcC------CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccC
Q 013858 130 PSIMKDIEFHEYTRPTSIQAQAMPVALSG------RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPT 203 (435)
Q Consensus 130 ~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~------~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~ 203 (435)
....+....++| .|++.|.++|+.++.+ .|+++||+||+|||.+|+.+++..+.. +++++|++||
T Consensus 588 ~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~--------g~qvlvLvPT 658 (1147)
T PRK10689 588 EQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN--------HKQVAVLVPT 658 (1147)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc--------CCeEEEEeCc
Confidence 344455677777 7999999999999986 799999999999999998888766532 6889999999
Q ss_pred hhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHh----CCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCC
Q 013858 204 RELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELR----GGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEAD 279 (435)
Q Consensus 204 r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah 279 (435)
++||.|+++.+++++..+ ++++..+.|+....++...+. ++++|+|+||+.+ +..+.+.++++|||||+|
T Consensus 659 ~eLA~Q~~~~f~~~~~~~-~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL-----~~~v~~~~L~lLVIDEah 732 (1147)
T PRK10689 659 TLLAQQHYDNFRDRFANW-PVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL-----QSDVKWKDLGLLIVDEEH 732 (1147)
T ss_pred HHHHHHHHHHHHHhhccC-CceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH-----hCCCCHhhCCEEEEechh
Confidence 999999999998876555 578888888887766654332 4689999999644 235667899999999999
Q ss_pred cccCCCCHHHHHHHHHhCCCCCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHH
Q 013858 280 RMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLAL 359 (435)
Q Consensus 280 ~~~~~~~~~~i~~i~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~ 359 (435)
++ |+. ....+..++.++|+++||||+++....++..++.++..+...... ...+.++............+..
T Consensus 733 rf---G~~--~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~--r~~v~~~~~~~~~~~~k~~il~- 804 (1147)
T PRK10689 733 RF---GVR--HKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR--RLAVKTFVREYDSLVVREAILR- 804 (1147)
T ss_pred hc---chh--HHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCC--CCCceEEEEecCcHHHHHHHHH-
Confidence 86 332 345566778889999999998888777777788888777643322 2334444433322111112211
Q ss_pred HHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhC--CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 360 LVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE--GLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 360 l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~--~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
+. ..+++++||||+++.++.+++.|++. +..+..+||+|++.+|.+++.+|++|+.+|||||+++
T Consensus 805 --el--------~r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIi 871 (1147)
T PRK10689 805 --EI--------LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTII 871 (1147)
T ss_pred --HH--------hcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchh
Confidence 11 22356999999999999999999987 7899999999999999999999999999999999986
No 49
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=4.2e-34 Score=307.24 Aligned_cols=265 Identities=22% Similarity=0.286 Sum_probs=205.0
Q ss_pred HHHHC-CCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHH
Q 013858 135 DIEFH-EYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKE 213 (435)
Q Consensus 135 ~l~~~-~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~ 213 (435)
.++.. |+ .|+++|+.+++.++.|+|++++||||+|||+ |.+++..++.. .+++++|++|||+||.|+++.
T Consensus 72 ~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~-------~g~~alIL~PTreLa~Qi~~~ 142 (1176)
T PRK09401 72 FFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK-------KGKKSYIIFPTRLLVEQVVEK 142 (1176)
T ss_pred HHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh-------cCCeEEEEeccHHHHHHHHHH
Confidence 34343 55 8999999999999999999999999999996 55666555433 268899999999999999999
Q ss_pred HHHHhhcCCCceEEEEECCCC-----HHHHHHHHh-CCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccC----
Q 013858 214 VKALSRSLDSFKTAIVVGGTN-----IAEQRSELR-GGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLD---- 283 (435)
Q Consensus 214 ~~~~~~~~~~~~~~~~~g~~~-----~~~~~~~~~-~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~---- 283 (435)
++.++... ++.+..++|+.. ..+....+. ++++|+|+||++|.+.+. .+...++++|||||||++++
T Consensus 143 l~~l~~~~-~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k~ 219 (1176)
T PRK09401 143 LEKFGEKV-GCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSKN 219 (1176)
T ss_pred HHHHhhhc-CceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhcccc
Confidence 99999775 577777777654 222333344 458999999999998875 45566799999999999886
Q ss_pred -------CCCH-HHHHHHHHhCCC------------------------CCeEEEEcccccHH-HHHHHHHHcCCCeEEEe
Q 013858 284 -------MGFE-PQIREVMQNLPD------------------------KHQTLLFSATMPVE-IEALAQEYLTDPVQVKV 330 (435)
Q Consensus 284 -------~~~~-~~i~~i~~~~~~------------------------~~q~i~~SATl~~~-~~~~~~~~~~~~~~i~~ 330 (435)
.||. ..+..++..++. ..|++++|||+++. +.. .++.++..+.+
T Consensus 220 id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v 296 (1176)
T PRK09401 220 IDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFEV 296 (1176)
T ss_pred hhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceEEe
Confidence 6774 567777766654 68999999999763 432 23445556666
Q ss_pred CCCCCCCCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHH---HHHHHHHHHhCCCcEEEecCC
Q 013858 331 GKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTR---CDEVSEALVAEGLHAVALHGG 407 (435)
Q Consensus 331 ~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~---~~~l~~~L~~~~~~v~~lh~~ 407 (435)
+.......++.+.+.... ++...+.+++... +.++||||++++. ++.+++.|+..|+.+..+||+
T Consensus 297 ~~~~~~~rnI~~~yi~~~--~k~~~L~~ll~~l----------~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~ 364 (1176)
T PRK09401 297 GSPVFYLRNIVDSYIVDE--DSVEKLVELVKRL----------GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISG 364 (1176)
T ss_pred cCcccccCCceEEEEEcc--cHHHHHHHHHHhc----------CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCc
Confidence 666555677888877665 5556666655331 1359999999777 999999999999999999999
Q ss_pred CCHHHHHHHHHHHHcCCCcEEEEc
Q 013858 408 RNQSDRESALRDFRNGSTNILVFS 431 (435)
Q Consensus 408 ~~~~~R~~~~~~f~~g~~~VLVaT 431 (435)
+ .+.+++|++|+.+|||||
T Consensus 365 l-----~~~l~~F~~G~~~VLVat 383 (1176)
T PRK09401 365 F-----ERKFEKFEEGEVDVLVGV 383 (1176)
T ss_pred H-----HHHHHHHHCCCCCEEEEe
Confidence 9 234599999999999994
No 50
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=3.8e-33 Score=290.43 Aligned_cols=261 Identities=17% Similarity=0.198 Sum_probs=196.1
Q ss_pred HHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcCCCceE
Q 013858 147 IQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKT 226 (435)
Q Consensus 147 ~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~ 226 (435)
+-.+.+..+..++++|++|+||||||++|.++++.... .+++++|++|||++|.|+++++.+......+..+
T Consensus 6 ~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~--------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~V 77 (819)
T TIGR01970 6 VLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG--------IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTV 77 (819)
T ss_pred HHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc--------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEE
Confidence 34455666667889999999999999999888887642 1468999999999999999998544322224555
Q ss_pred EEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCC-cccCCCCHHHH-HHHHHhCCCCCeEE
Q 013858 227 AIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEAD-RMLDMGFEPQI-REVMQNLPDKHQTL 304 (435)
Q Consensus 227 ~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah-~~~~~~~~~~i-~~i~~~~~~~~q~i 304 (435)
+..+++.. ....+++|+|+|+|+|++++.. +..+.++++|||||+| |+++.++...+ ..+...++++.|+|
T Consensus 78 Gy~vr~~~------~~s~~t~I~v~T~G~Llr~l~~-d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlI 150 (819)
T TIGR01970 78 GYRVRGEN------KVSRRTRLEVVTEGILTRMIQD-DPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKIL 150 (819)
T ss_pred EEEEcccc------ccCCCCcEEEECCcHHHHHHhh-CcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEE
Confidence 55555432 2345689999999999999876 5679999999999999 78888776544 45666688899999
Q ss_pred EEcccccHHHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHH-HHHHHHHHHHhhhccCCCCCcEEEEeCc
Q 013858 305 LFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDR-LLALLVEEAFLAEKSCHPFPLTIVFVER 383 (435)
Q Consensus 305 ~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~-l~~~l~~~~~~~~~~~~~~~~~lVF~~~ 383 (435)
+||||++... ...|+.++..+..... ...+.+++.......+... +...+..... ...+.+||||++
T Consensus 151 lmSATl~~~~---l~~~l~~~~vI~~~gr---~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~------~~~g~iLVFlpg 218 (819)
T TIGR01970 151 AMSATLDGER---LSSLLPDAPVVESEGR---SFPVEIRYLPLRGDQRLEDAVSRAVEHALA------SETGSILVFLPG 218 (819)
T ss_pred EEeCCCCHHH---HHHHcCCCcEEEecCc---ceeeeeEEeecchhhhHHHHHHHHHHHHHH------hcCCcEEEEECC
Confidence 9999998653 3567766555544322 2346666665554444322 2223332221 224579999999
Q ss_pred hHHHHHHHHHHHh---CCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 384 KTRCDEVSEALVA---EGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 384 ~~~~~~l~~~L~~---~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
+.+++.+++.|++ .++.+..+||+|++++|.++++.|++|+.+||||||+.
T Consensus 219 ~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIA 272 (819)
T TIGR01970 219 QAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIA 272 (819)
T ss_pred HHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchH
Confidence 9999999999987 47899999999999999999999999999999999974
No 51
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-33 Score=276.64 Aligned_cols=235 Identities=20% Similarity=0.235 Sum_probs=179.3
Q ss_pred CCCcHHHHHHHHH-HhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHH-HHHhh
Q 013858 142 TRPTSIQAQAMPV-ALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEV-KALSR 219 (435)
Q Consensus 142 ~~p~~~Q~~~i~~-~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~-~~~~~ 219 (435)
.-|--..++-|.. |.++..|||||+||||||+ ++|+|.+..++.......++++-|+.|+|..|..+++++ .+++.
T Consensus 254 ~LPI~aeEq~IMEaIn~n~vvIIcGeTGsGKTT--QvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~ 331 (1172)
T KOG0926|consen 254 DLPIVAEEQRIMEAINENPVVIICGETGSGKTT--QVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGV 331 (1172)
T ss_pred cCchhHHHHHHHHHhhcCCeEEEecCCCCCccc--cchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhcc
Confidence 3344444455544 4455569999999999999 899999999887665566778999999999998888777 66766
Q ss_pred cCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCC-cccCCC----CHHHHHHHH
Q 013858 220 SLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEAD-RMLDMG----FEPQIREVM 294 (435)
Q Consensus 220 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah-~~~~~~----~~~~i~~i~ 294 (435)
....+.+++.|.|+ ....+.|.|||+|.|++.+++ ++.|++|+.||||||| |.++.+ +++++..++
T Consensus 332 ~~~eVsYqIRfd~t--------i~e~T~IkFMTDGVLLrEi~~-DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR 402 (1172)
T KOG0926|consen 332 LGSEVSYQIRFDGT--------IGEDTSIKFMTDGVLLREIEN-DFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLR 402 (1172)
T ss_pred CccceeEEEEeccc--------cCCCceeEEecchHHHHHHHH-hHhhhhceeEEechhhhccchHHHHHHHHHHHHHHH
Confidence 44578999999988 445589999999999999987 8899999999999999 888754 677777777
Q ss_pred HhCCC------CCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEEE--cChhhHHHHHHHHHHHHHHh
Q 013858 295 QNLPD------KHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEK--VSENEKVDRLLALLVEEAFL 366 (435)
Q Consensus 295 ~~~~~------~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~--~~~~~k~~~l~~~l~~~~~~ 366 (435)
....+ ++++|+||||+ ....|..+...+.+.. +......+|+.+. .+.....+|+.+++++.+.+
T Consensus 403 ~k~~ke~~~~kpLKLIIMSATL------RVsDFtenk~LFpi~p-PlikVdARQfPVsIHF~krT~~DYi~eAfrKtc~I 475 (1172)
T KOG0926|consen 403 QKYYKEQCQIKPLKLIIMSATL------RVSDFTENKRLFPIPP-PLIKVDARQFPVSIHFNKRTPDDYIAEAFRKTCKI 475 (1172)
T ss_pred HHHhhhhcccCceeEEEEeeeE------EecccccCceecCCCC-ceeeeecccCceEEEeccCCCchHHHHHHHHHHHH
Confidence 77655 78999999998 3444443322221111 1112222333222 24455569999999999999
Q ss_pred hhccCCCCCcEEEEeCchHHHHHHHHHHHh
Q 013858 367 AEKSCHPFPLTIVFVERKTRCDEVSEALVA 396 (435)
Q Consensus 367 ~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~ 396 (435)
|++ .|+|.+|||++++.++++|++.|++
T Consensus 476 H~k--LP~G~ILVFvTGQqEV~qL~~kLRK 503 (1172)
T KOG0926|consen 476 HKK--LPPGGILVFVTGQQEVDQLCEKLRK 503 (1172)
T ss_pred hhc--CCCCcEEEEEeChHHHHHHHHHHHh
Confidence 999 9999999999999999999999987
No 52
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=7.4e-33 Score=288.92 Aligned_cols=261 Identities=18% Similarity=0.226 Sum_probs=195.9
Q ss_pred HHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcCCCceE
Q 013858 147 IQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKT 226 (435)
Q Consensus 147 ~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~ 226 (435)
+-.+.+.++.+++++|++|+||||||++|.++++..... +++++|++|||++|.|+++++.+......+..+
T Consensus 9 ~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~--------~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~V 80 (812)
T PRK11664 9 VLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI--------NGKIIMLEPRRLAARNVAQRLAEQLGEKPGETV 80 (812)
T ss_pred HHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc--------CCeEEEECChHHHHHHHHHHHHHHhCcccCceE
Confidence 344556666688899999999999999988877764211 358999999999999999998554333235667
Q ss_pred EEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCC-cccCCCCH-HHHHHHHHhCCCCCeEE
Q 013858 227 AIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEAD-RMLDMGFE-PQIREVMQNLPDKHQTL 304 (435)
Q Consensus 227 ~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah-~~~~~~~~-~~i~~i~~~~~~~~q~i 304 (435)
+..+++... ....++|+|+|||+|++++.. +..+.++++|||||+| |.++.++. ..+..++..+++++|+|
T Consensus 81 Gy~vr~~~~------~~~~t~I~v~T~G~Llr~l~~-d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqli 153 (812)
T PRK11664 81 GYRMRAESK------VGPNTRLEVVTEGILTRMIQR-DPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLL 153 (812)
T ss_pred EEEecCccc------cCCCCcEEEEChhHHHHHHhh-CCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEE
Confidence 777666532 234578999999999998876 5679999999999999 67776653 33456667788899999
Q ss_pred EEcccccHHHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHH-HHHHHHHHHhhhccCCCCCcEEEEeCc
Q 013858 305 LFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRL-LALLVEEAFLAEKSCHPFPLTIVFVER 383 (435)
Q Consensus 305 ~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l-~~~l~~~~~~~~~~~~~~~~~lVF~~~ 383 (435)
+||||++... ...|+.++..+..... ...+.+++.......+.... ...+..... ...+.+||||++
T Consensus 154 lmSATl~~~~---l~~~~~~~~~I~~~gr---~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~------~~~g~iLVFlpg 221 (812)
T PRK11664 154 IMSATLDNDR---LQQLLPDAPVIVSEGR---SFPVERRYQPLPAHQRFDEAVARATAELLR------QESGSLLLFLPG 221 (812)
T ss_pred EEecCCCHHH---HHHhcCCCCEEEecCc---cccceEEeccCchhhhHHHHHHHHHHHHHH------hCCCCEEEEcCC
Confidence 9999998642 3566765555544322 23466666666555554322 222332221 224679999999
Q ss_pred hHHHHHHHHHHHh---CCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 384 KTRCDEVSEALVA---EGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 384 ~~~~~~l~~~L~~---~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
+.+++.+++.|+. .++.+..+||++++.+|..+++.|++|+.+||||||+.
T Consensus 222 ~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIA 275 (812)
T PRK11664 222 VGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIA 275 (812)
T ss_pred HHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchH
Confidence 9999999999987 57889999999999999999999999999999999974
No 53
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=2e-32 Score=300.19 Aligned_cols=273 Identities=17% Similarity=0.228 Sum_probs=208.2
Q ss_pred HHHHHHHH-CCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHH
Q 013858 131 SIMKDIEF-HEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQ 209 (435)
Q Consensus 131 ~l~~~l~~-~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q 209 (435)
++.+.++. .|+ .|+++|+++++.++.|++++++||||+|||++++++++... . .++++||++||++|+.|
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~-~-------~g~~aLVl~PTreLa~Q 137 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLA-L-------KGKKCYIILPTTLLVKQ 137 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHH-h-------cCCeEEEEECHHHHHHH
Confidence 34455655 788 69999999999999999999999999999996655554432 1 25789999999999999
Q ss_pred HHHHHHHHhhcCC-CceEEEEECCCCHHHHHH---HHhC-CCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccC-
Q 013858 210 IEKEVKALSRSLD-SFKTAIVVGGTNIAEQRS---ELRG-GVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLD- 283 (435)
Q Consensus 210 ~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~---~~~~-~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~- 283 (435)
+.+.++.++.... ++++..++|+....++.. .+.. .++|+|+||++|.+.+.. . ...++++|||||||++++
T Consensus 138 i~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~-l-~~~~i~~iVVDEAD~ml~~ 215 (1638)
T PRK14701 138 TVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPE-M-KHLKFDFIFVDDVDAFLKA 215 (1638)
T ss_pred HHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHH-H-hhCCCCEEEEECceecccc
Confidence 9999999987642 467778888887765532 3333 589999999999876643 1 226799999999999986
Q ss_pred ----------CCCHHHHHH----HHH----------------------hCCCCCe-EEEEcccccHHHHHHHHHHcCCCe
Q 013858 284 ----------MGFEPQIRE----VMQ----------------------NLPDKHQ-TLLFSATMPVEIEALAQEYLTDPV 326 (435)
Q Consensus 284 ----------~~~~~~i~~----i~~----------------------~~~~~~q-~i~~SATl~~~~~~~~~~~~~~~~ 326 (435)
.||.+.+.. ++. .+++..| ++++|||+++.- ....++.++.
T Consensus 216 ~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~--~~~~l~~~~l 293 (1638)
T PRK14701 216 SKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKG--DRVKLYRELL 293 (1638)
T ss_pred ccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchh--HHHHHhhcCe
Confidence 478777754 322 2344455 577999998631 1223456777
Q ss_pred EEEeCCCCCCCCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHH---HHHHHHHHHhCCCcEEE
Q 013858 327 QVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTR---CDEVSEALVAEGLHAVA 403 (435)
Q Consensus 327 ~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~---~~~l~~~L~~~~~~v~~ 403 (435)
.+.++.......++.+.+..+....+ ..+.+++... +.++||||++++. |+.+++.|+..|+++..
T Consensus 294 ~f~v~~~~~~lr~i~~~yi~~~~~~k-~~L~~ll~~~----------g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~ 362 (1638)
T PRK14701 294 GFEVGSGRSALRNIVDVYLNPEKIIK-EHVRELLKKL----------GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIEL 362 (1638)
T ss_pred EEEecCCCCCCCCcEEEEEECCHHHH-HHHHHHHHhC----------CCCeEEEEeccccchHHHHHHHHHHHCCCeEEE
Confidence 77777766666778888877665544 4555555331 2358999999875 58999999999999999
Q ss_pred ecCCCCHHHHHHHHHHHHcCCCcEEEEcC
Q 013858 404 LHGGRNQSDRESALRDFRNGSTNILVFSY 432 (435)
Q Consensus 404 lh~~~~~~~R~~~~~~f~~g~~~VLVaT~ 432 (435)
+||+ |..++++|++|+.+|||||+
T Consensus 363 ~h~~-----R~~~l~~F~~G~~~VLVaT~ 386 (1638)
T PRK14701 363 VSAK-----NKKGFDLFEEGEIDYLIGVA 386 (1638)
T ss_pred ecch-----HHHHHHHHHcCCCCEEEEec
Confidence 9995 88999999999999999996
No 54
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=6.4e-32 Score=280.25 Aligned_cols=272 Identities=21% Similarity=0.290 Sum_probs=197.7
Q ss_pred HHHHH-HHHCCCCCCcHHHHHHHHHHhcC------CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccC
Q 013858 131 SIMKD-IEFHEYTRPTSIQAQAMPVALSG------RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPT 203 (435)
Q Consensus 131 ~l~~~-l~~~~~~~p~~~Q~~~i~~~~~~------~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~ 203 (435)
.+.+. +..++| .|+++|+++++.+..+ .+++++|+||||||++|++|++..+.. |.+++|++||
T Consensus 249 ~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~--------g~q~lilaPT 319 (681)
T PRK10917 249 ELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA--------GYQAALMAPT 319 (681)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc--------CCeEEEEecc
Confidence 34444 455666 6999999999999876 379999999999999999999887643 6889999999
Q ss_pred hhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHH---HHHh-CCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCC
Q 013858 204 RELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQR---SELR-GGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEAD 279 (435)
Q Consensus 204 r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~-~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah 279 (435)
++||.|+++.+++++... ++++..++|+....+.. ..+. +.++|+|+||+.+. ....+.++++|||||+|
T Consensus 320 ~~LA~Q~~~~l~~l~~~~-~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~-----~~v~~~~l~lvVIDE~H 393 (681)
T PRK10917 320 EILAEQHYENLKKLLEPL-GIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQ-----DDVEFHNLGLVIIDEQH 393 (681)
T ss_pred HHHHHHHHHHHHHHHhhc-CcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhc-----ccchhcccceEEEechh
Confidence 999999999999998776 68999999998864433 3333 35899999998773 34567899999999999
Q ss_pred cccCCCCHHHHHHHHHhCCCCCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHH
Q 013858 280 RMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLAL 359 (435)
Q Consensus 280 ~~~~~~~~~~i~~i~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~ 359 (435)
++ +......+.......++++||||+.+....+.. ..+.....+.........+...+.... +...+++.
T Consensus 394 rf-----g~~qr~~l~~~~~~~~iL~~SATp~prtl~~~~--~g~~~~s~i~~~p~~r~~i~~~~~~~~---~~~~~~~~ 463 (681)
T PRK10917 394 RF-----GVEQRLALREKGENPHVLVMTATPIPRTLAMTA--YGDLDVSVIDELPPGRKPITTVVIPDS---RRDEVYER 463 (681)
T ss_pred hh-----hHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHH--cCCCceEEEecCCCCCCCcEEEEeCcc---cHHHHHHH
Confidence 85 222333344445567899999998665543332 232211122222221223444433322 23444555
Q ss_pred HHHHHHhhhccCCCCCcEEEEeCchH--------HHHHHHHHHHhC--CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEE
Q 013858 360 LVEEAFLAEKSCHPFPLTIVFVERKT--------RCDEVSEALVAE--GLHAVALHGGRNQSDRESALRDFRNGSTNILV 429 (435)
Q Consensus 360 l~~~~~~~~~~~~~~~~~lVF~~~~~--------~~~~l~~~L~~~--~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLV 429 (435)
+.+... .+.+++|||+..+ .++.+++.|+.. ++.|..+||+|++.+|+.++++|++|+.+|||
T Consensus 464 i~~~~~-------~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILV 536 (681)
T PRK10917 464 IREEIA-------KGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILV 536 (681)
T ss_pred HHHHHH-------cCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEE
Confidence 554442 2346999999643 456778888765 57899999999999999999999999999999
Q ss_pred EcCCC
Q 013858 430 FSYKL 434 (435)
Q Consensus 430 aT~~L 434 (435)
||+++
T Consensus 537 aT~vi 541 (681)
T PRK10917 537 ATTVI 541 (681)
T ss_pred ECcce
Confidence 99976
No 55
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=4.3e-32 Score=292.20 Aligned_cols=269 Identities=22% Similarity=0.342 Sum_probs=201.8
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHH
Q 013858 132 IMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIE 211 (435)
Q Consensus 132 l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~ 211 (435)
+.+.+.......|+++|+.+++.++.|++++++||||+|||+ |.+|+..++... +++++|++|||+||.|++
T Consensus 67 f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~~-------g~~vLIL~PTreLa~Qi~ 138 (1171)
T TIGR01054 67 FEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAKK-------GKRCYIILPTTLLVIQVA 138 (1171)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHhc-------CCeEEEEeCHHHHHHHHH
Confidence 334455555568999999999999999999999999999997 667777665442 688999999999999999
Q ss_pred HHHHHHhhcCCCceE---EEEECCCCHHHHH---HHHh-CCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccC-
Q 013858 212 KEVKALSRSLDSFKT---AIVVGGTNIAEQR---SELR-GGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLD- 283 (435)
Q Consensus 212 ~~~~~~~~~~~~~~~---~~~~g~~~~~~~~---~~~~-~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~- 283 (435)
+.++.++... ++.. ..++|+....++. ..+. ++++|+|+||++|.+.+.. +.. +++++||||||++++
T Consensus 139 ~~l~~l~~~~-~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~--l~~-~~~~iVvDEaD~~L~~ 214 (1171)
T TIGR01054 139 EKISSLAEKA-GVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDE--LGP-KFDFIFVDDVDALLKA 214 (1171)
T ss_pred HHHHHHHHhc-CCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHH--hcC-CCCEEEEeChHhhhhc
Confidence 9999998764 3433 3467887765543 2333 4589999999999887654 222 899999999999987
Q ss_pred ----------CCCHHH-HHHHH----------------------HhCCCCCe--EEEEccc-ccHHHHHHHHHHcCCCeE
Q 013858 284 ----------MGFEPQ-IREVM----------------------QNLPDKHQ--TLLFSAT-MPVEIEALAQEYLTDPVQ 327 (435)
Q Consensus 284 ----------~~~~~~-i~~i~----------------------~~~~~~~q--~i~~SAT-l~~~~~~~~~~~~~~~~~ 327 (435)
.||... +..++ ..+++..| ++++||| +|..+.. .++.+...
T Consensus 215 ~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r~ll~ 291 (1171)
T TIGR01054 215 SKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFRELLG 291 (1171)
T ss_pred cccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHcccccc
Confidence 677653 44432 23445555 6678999 5655432 34555666
Q ss_pred EEeCCCCCCCCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCch---HHHHHHHHHHHhCCCcEEEe
Q 013858 328 VKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERK---TRCDEVSEALVAEGLHAVAL 404 (435)
Q Consensus 328 i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~---~~~~~l~~~L~~~~~~v~~l 404 (435)
+.++.......++.+.+..... +...+.+++... +.++||||+++ +.|+.|++.|+..|+++..+
T Consensus 292 ~~v~~~~~~~r~I~~~~~~~~~--~~~~L~~ll~~l----------~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~l 359 (1171)
T TIGR01054 292 FEVGGGSDTLRNVVDVYVEDED--LKETLLEIVKKL----------GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAY 359 (1171)
T ss_pred eEecCccccccceEEEEEeccc--HHHHHHHHHHHc----------CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEE
Confidence 6676666556677777765443 234444444321 23589999999 99999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHcCCCcEEEEc
Q 013858 405 HGGRNQSDRESALRDFRNGSTNILVFS 431 (435)
Q Consensus 405 h~~~~~~~R~~~~~~f~~g~~~VLVaT 431 (435)
||++++ .+++.|++|+.+|||||
T Consensus 360 hg~~~~----~~l~~Fr~G~~~vLVat 382 (1171)
T TIGR01054 360 HATKPK----EDYEKFAEGEIDVLIGV 382 (1171)
T ss_pred eCCCCH----HHHHHHHcCCCCEEEEe
Confidence 999973 68999999999999995
No 56
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=2e-31 Score=274.89 Aligned_cols=273 Identities=22% Similarity=0.267 Sum_probs=195.1
Q ss_pred HHHHHHHHCCCCCCcHHHHHHHHHHhcC------CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccCh
Q 013858 131 SIMKDIEFHEYTRPTSIQAQAMPVALSG------RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTR 204 (435)
Q Consensus 131 ~l~~~l~~~~~~~p~~~Q~~~i~~~~~~------~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r 204 (435)
.+.+.+...+| .|+++|+.+++.++.+ .+.+++|+||||||++|++|++..+.. +.+++|++||+
T Consensus 224 ~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~--------g~qvlilaPT~ 294 (630)
T TIGR00643 224 LLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA--------GYQVALMAPTE 294 (630)
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc--------CCcEEEECCHH
Confidence 34456677888 7999999999999865 258999999999999999999887643 67899999999
Q ss_pred hhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHH---HHH-hCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCc
Q 013858 205 ELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQR---SEL-RGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADR 280 (435)
Q Consensus 205 ~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~-~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~ 280 (435)
+||.|+++.+++++... ++++.+++|+....+.. ..+ .+.++|+|+|++.+. ....+.++++|||||+|+
T Consensus 295 ~LA~Q~~~~~~~l~~~~-gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~-----~~~~~~~l~lvVIDEaH~ 368 (630)
T TIGR00643 295 ILAEQHYNSLRNLLAPL-GIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQ-----EKVEFKRLALVIIDEQHR 368 (630)
T ss_pred HHHHHHHHHHHHHhccc-CcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHh-----ccccccccceEEEechhh
Confidence 99999999999998765 68999999998765532 223 345799999998764 245678999999999998
Q ss_pred ccCCCCHHHHHHHHHhCC--CCCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHH
Q 013858 281 MLDMGFEPQIREVMQNLP--DKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLA 358 (435)
Q Consensus 281 ~~~~~~~~~i~~i~~~~~--~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 358 (435)
+.. .+...++.... ...++++||||+.+....+. ...+.....+.........+...+... . ....++.
T Consensus 369 fg~----~qr~~l~~~~~~~~~~~~l~~SATp~prtl~l~--~~~~l~~~~i~~~p~~r~~i~~~~~~~--~-~~~~~~~ 439 (630)
T TIGR00643 369 FGV----EQRKKLREKGQGGFTPHVLVMSATPIPRTLALT--VYGDLDTSIIDELPPGRKPITTVLIKH--D-EKDIVYE 439 (630)
T ss_pred ccH----HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHH--hcCCcceeeeccCCCCCCceEEEEeCc--c-hHHHHHH
Confidence 531 12222333332 25789999999865443322 222111111111111122333333222 2 2244555
Q ss_pred HHHHHHHhhhccCCCCCcEEEEeCch--------HHHHHHHHHHHhC--CCcEEEecCCCCHHHHHHHHHHHHcCCCcEE
Q 013858 359 LLVEEAFLAEKSCHPFPLTIVFVERK--------TRCDEVSEALVAE--GLHAVALHGGRNQSDRESALRDFRNGSTNIL 428 (435)
Q Consensus 359 ~l~~~~~~~~~~~~~~~~~lVF~~~~--------~~~~~l~~~L~~~--~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VL 428 (435)
.+.+... .+.+++|||+.. ..++.+++.|+.. ++.|..+||+|++.+|..+++.|++|+.+||
T Consensus 440 ~i~~~l~-------~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~IL 512 (630)
T TIGR00643 440 FIEEEIA-------KGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDIL 512 (630)
T ss_pred HHHHHHH-------hCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEE
Confidence 5544432 234699999876 4566778888764 7889999999999999999999999999999
Q ss_pred EEcCCC
Q 013858 429 VFSYKL 434 (435)
Q Consensus 429 VaT~~L 434 (435)
|||+++
T Consensus 513 VaT~vi 518 (630)
T TIGR00643 513 VATTVI 518 (630)
T ss_pred EECcee
Confidence 999975
No 57
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=6.2e-32 Score=291.51 Aligned_cols=262 Identities=19% Similarity=0.202 Sum_probs=187.8
Q ss_pred EEccCCCchhHHhHHHHHHHHHhcCCC-----CCCCCCeEEEEccChhhHHHHHHHHHHHh-----------hcCCCceE
Q 013858 163 GCAETGSGKTAAFTIPMIQHCVAQTPV-----GRGDGPLALVLAPTRELAQQIEKEVKALS-----------RSLDSFKT 226 (435)
Q Consensus 163 i~~~TGsGKT~~~~~~~l~~~~~~~~~-----~~~~~~~~lil~P~r~la~q~~~~~~~~~-----------~~~~~~~~ 226 (435)
|++|||||||++|.+|++..+...... ....+.++|||+|+++|+.|+.+.++... ....++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 579999999999999999998764311 12346899999999999999999886522 11236889
Q ss_pred EEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcC-CCCCCCceEEEEecCCcccCCCCH----HHHHHHHHhCCCCC
Q 013858 227 AIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQG-NTSLSRVSFVILDEADRMLDMGFE----PQIREVMQNLPDKH 301 (435)
Q Consensus 227 ~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~-~~~l~~~~~iIiDEah~~~~~~~~----~~i~~i~~~~~~~~ 301 (435)
..++|++...++...+.+.++|+|+||++|..++.++ ...++++++|||||+|.+.+..++ ..+..+...++.+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 9999999998887777778999999999998876543 346899999999999988875433 34555556667789
Q ss_pred eEEEEcccccHHHHHHHHHHcC-CCeEEEeCCCCCCCCceEEEEEEcChhhH----------------HH----HHHHHH
Q 013858 302 QTLLFSATMPVEIEALAQEYLT-DPVQVKVGKVSSPTANVIQILEKVSENEK----------------VD----RLLALL 360 (435)
Q Consensus 302 q~i~~SATl~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~i~~~~~~~~~~~k----------------~~----~l~~~l 360 (435)
|+|++|||+++ .+++++.+.. +++.+.. ........+.. +.......+ .. .+...+
T Consensus 161 QrIgLSATI~n-~eevA~~L~g~~pv~Iv~-~~~~r~~~l~v-~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~i 237 (1490)
T PRK09751 161 QRIGLSATVRS-ASDVAAFLGGDRPVTVVN-PPAMRHPQIRI-VVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGI 237 (1490)
T ss_pred eEEEEEeeCCC-HHHHHHHhcCCCCEEEEC-CCCCcccceEE-EEecCchhhccccccccccccchhhhhhhhHHHHHHH
Confidence 99999999976 4555543333 3555532 22222223332 222211110 00 111111
Q ss_pred HHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCC---------------------------------CcEEEecCC
Q 013858 361 VEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEG---------------------------------LHAVALHGG 407 (435)
Q Consensus 361 ~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~---------------------------------~~v~~lh~~ 407 (435)
.... ....++|||||++..|+.++..|++.. ..+..+||+
T Consensus 238 l~~i-------~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGs 310 (1490)
T PRK09751 238 LDEV-------LRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGS 310 (1490)
T ss_pred HHHH-------hcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeecccc
Confidence 1111 123469999999999999999997641 126789999
Q ss_pred CCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 408 RNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 408 ~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
+++++|..+++.|++|++++||||++|
T Consensus 311 LSkeeR~~IE~~fK~G~LrvLVATssL 337 (1490)
T PRK09751 311 VSKEQRAITEQALKSGELRCVVATSSL 337 (1490)
T ss_pred CCHHHHHHHHHHHHhCCceEEEeCcHH
Confidence 999999999999999999999999986
No 58
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=1.4e-31 Score=272.54 Aligned_cols=266 Identities=17% Similarity=0.176 Sum_probs=186.6
Q ss_pred HHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHH-------hc-CCCC-CCCCCeEEEEccChhhHHHHHHHHHH
Q 013858 146 SIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCV-------AQ-TPVG-RGDGPLALVLAPTRELAQQIEKEVKA 216 (435)
Q Consensus 146 ~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~-------~~-~~~~-~~~~~~~lil~P~r~la~q~~~~~~~ 216 (435)
.+|.++++.+++|+++|++|+||||||++ +|++.... .. .... ...+++++|++|||+||.|+..++.+
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtq--vPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~ 244 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQ--VPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLK 244 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhH--HHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHH
Confidence 47999999999999999999999999984 44333210 00 0001 22356899999999999999999877
Q ss_pred Hhhc--CCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCCCHHHHHHHH
Q 013858 217 LSRS--LDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVM 294 (435)
Q Consensus 217 ~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~~~~~i~~i~ 294 (435)
.... +.+..+...+||... .......+..+|+|+|++.. ...+.++++|||||||.+...+ ..+..++
T Consensus 245 ~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~-------l~~L~~v~~VVIDEaHEr~~~~--DllL~ll 314 (675)
T PHA02653 245 SLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLT-------LNKLFDYGTVIIDEVHEHDQIG--DIIIAVA 314 (675)
T ss_pred HhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCccc-------ccccccCCEEEccccccCccch--hHHHHHH
Confidence 5533 345678889999873 22222233679999997531 2357899999999999665443 3344444
Q ss_pred HhCC-CCCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEEEcCh---------hhHHHHHHHHHHHHH
Q 013858 295 QNLP-DKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSE---------NEKVDRLLALLVEEA 364 (435)
Q Consensus 295 ~~~~-~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~---------~~k~~~l~~~l~~~~ 364 (435)
.... ...|+++||||++.+++.+ ..|+.++..+.+.. .....+.+++..... ......+...+....
T Consensus 315 k~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~g--rt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~ 391 (675)
T PHA02653 315 RKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPG--GTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYT 391 (675)
T ss_pred HHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCC--CcCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhh
Confidence 4433 3459999999999888776 67888888887653 234566776654321 111112222222111
Q ss_pred HhhhccCCCCCcEEEEeCchHHHHHHHHHHHhC--CCcEEEecCCCCHHHHHHHHHHH-HcCCCcEEEEcCCC
Q 013858 365 FLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE--GLHAVALHGGRNQSDRESALRDF-RNGSTNILVFSYKL 434 (435)
Q Consensus 365 ~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~--~~~v~~lh~~~~~~~R~~~~~~f-~~g~~~VLVaT~~L 434 (435)
. ..++.+||||+++.+|+.+++.|++. ++.+..+||++++. ++++++| ++|+.+||||||++
T Consensus 392 ----~--~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIA 456 (675)
T PHA02653 392 ----P--PKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYL 456 (675)
T ss_pred ----c--ccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChh
Confidence 0 23457999999999999999999987 79999999999974 5677777 78999999999985
No 59
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=100.00 E-value=1.4e-31 Score=239.39 Aligned_cols=202 Identities=51% Similarity=0.851 Sum_probs=182.9
Q ss_pred cccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcc
Q 013858 123 FTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAP 202 (435)
Q Consensus 123 ~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P 202 (435)
|.++++++.+.+.+..+|+..|+++|.++++.+.+|+++++++|||+|||++|++|++..+.... ...+++++|++|
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~---~~~~~~viii~p 77 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP---KKDGPQALILAP 77 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc---ccCCceEEEEcC
Confidence 67889999999999999999999999999999999999999999999999999999999877642 124689999999
Q ss_pred ChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCccc
Q 013858 203 TRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRML 282 (435)
Q Consensus 203 ~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~ 282 (435)
+++|+.|+...++.+.... ++.+..++|+....+....+..+++|+|+||+.|.+.+.+....+.+++++|+||+|.+.
T Consensus 78 ~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~ 156 (203)
T cd00268 78 TRELALQIAEVARKLGKHT-NLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRML 156 (203)
T ss_pred CHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhh
Confidence 9999999999999988664 688899999998877766676789999999999999988877788999999999999988
Q ss_pred CCCCHHHHHHHHHhCCCCCeEEEEcccccHHHHHHHHHHcCCCeEE
Q 013858 283 DMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQV 328 (435)
Q Consensus 283 ~~~~~~~i~~i~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i 328 (435)
+.++...+..++..++..+|++++|||+++....++..++.+|+.+
T Consensus 157 ~~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 157 DMGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred ccChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 8889999999999999899999999999999999999999988775
No 60
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=7.1e-32 Score=278.23 Aligned_cols=288 Identities=19% Similarity=0.240 Sum_probs=216.0
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHHh-cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChh
Q 013858 127 CLHPSIMKDIEFHEYTRPTSIQAQAMPVAL-SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRE 205 (435)
Q Consensus 127 ~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~-~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~ 205 (435)
.+++.+.+.+...++..+.+.|+.++...+ .++|+++|+|||||||+++.+.++..+... +.+++||+|+++
T Consensus 15 ~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~-------~~k~vYivPlkA 87 (766)
T COG1204 15 KLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG-------GGKVVYIVPLKA 87 (766)
T ss_pred cccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc-------CCcEEEEeChHH
Confidence 467788888888888888888888888766 558999999999999999999998887763 478999999999
Q ss_pred hHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCC
Q 013858 206 LAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG 285 (435)
Q Consensus 206 la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~ 285 (435)
||.+.+++|+++... ++++...+|+...... ...+++|+|+||+++...+.+....+..+++|||||+|.+.+..
T Consensus 88 La~Ek~~~~~~~~~~--GirV~~~TgD~~~~~~---~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~ 162 (766)
T COG1204 88 LAEEKYEEFSRLEEL--GIRVGISTGDYDLDDE---RLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRT 162 (766)
T ss_pred HHHHHHHHhhhHHhc--CCEEEEecCCcccchh---hhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcc
Confidence 999999999965543 7999999999875542 23568999999999988888777778899999999999887765
Q ss_pred CHHHHHHHHHhC---CCCCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCC--CCCCceEEEEEEcCh------hhHHH
Q 013858 286 FEPQIREVMQNL---PDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVS--SPTANVIQILEKVSE------NEKVD 354 (435)
Q Consensus 286 ~~~~i~~i~~~~---~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~i~~~~~~~~~------~~k~~ 354 (435)
.+..+..+.... ...+|++++|||+|+ ..+++...-.+++...+.... ..... .+.+..... ....+
T Consensus 163 RG~~lE~iv~r~~~~~~~~rivgLSATlpN-~~evA~wL~a~~~~~~~rp~~l~~~v~~-~~~~~~~~~~~k~~~~~~~~ 240 (766)
T COG1204 163 RGPVLESIVARMRRLNELIRIVGLSATLPN-AEEVADWLNAKLVESDWRPVPLRRGVPY-VGAFLGADGKKKTWPLLIDN 240 (766)
T ss_pred cCceehhHHHHHHhhCcceEEEEEeeecCC-HHHHHHHhCCcccccCCCCcccccCCcc-ceEEEEecCccccccccchH
Confidence 555555555444 345899999999974 444666554454421111111 11111 122222211 12334
Q ss_pred HHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhC-------------------------------------
Q 013858 355 RLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE------------------------------------- 397 (435)
Q Consensus 355 ~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~------------------------------------- 397 (435)
..++.+.... ..++++||||++++.+...++.|+..
T Consensus 241 ~~~~~v~~~~-------~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v 313 (766)
T COG1204 241 LALELVLESL-------AEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELV 313 (766)
T ss_pred HHHHHHHHHH-------hcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHH
Confidence 4444444433 45567999999999999999999830
Q ss_pred CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCCC
Q 013858 398 GLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYKLL 435 (435)
Q Consensus 398 ~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L~ 435 (435)
..+++++|+|++.++|..+.+.|+.|+++|||||++|+
T Consensus 314 ~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA 351 (766)
T COG1204 314 LRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLA 351 (766)
T ss_pred HhCccccccCCCHHHHHHHHHHHhcCCceEEEechHHh
Confidence 13478999999999999999999999999999999874
No 61
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=1.9e-31 Score=253.38 Aligned_cols=297 Identities=25% Similarity=0.264 Sum_probs=235.2
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEE
Q 013858 122 SFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPV-ALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 200 (435)
Q Consensus 122 ~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~-~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil 200 (435)
..+++.+++.+.+.|+..|++.+.|+|.-++.+ ++.|.|.+++++|+||||++.-++-+..++.. |.+.|++
T Consensus 195 ~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~-------g~KmlfL 267 (830)
T COG1202 195 PVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSG-------GKKMLFL 267 (830)
T ss_pred cccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhC-------CCeEEEE
Confidence 367789999999999999999999999999998 66999999999999999999988888887763 6889999
Q ss_pred ccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHH----HHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEe
Q 013858 201 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRS----ELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILD 276 (435)
Q Consensus 201 ~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiD 276 (435)
+|..+||+|-++.|++-...+ ++++.+.+|......... .....++|+|+|++-+..++..+ ..+.++..||||
T Consensus 268 vPLVALANQKy~dF~~rYs~L-glkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtVVID 345 (830)
T COG1202 268 VPLVALANQKYEDFKERYSKL-GLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTVVID 345 (830)
T ss_pred ehhHHhhcchHHHHHHHhhcc-cceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceEEee
Confidence 999999999999997665555 688888888765443321 12345799999999998877765 578999999999
Q ss_pred cCCcccCCC---CHHHHHHHHHhCCCCCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEEEcC-hhhH
Q 013858 277 EADRMLDMG---FEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVS-ENEK 352 (435)
Q Consensus 277 Eah~~~~~~---~~~~i~~i~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~-~~~k 352 (435)
|+|.+-+.. .+..+..-++++.+..|+|.+|||..+ -+++++.+-.+.+.. +.. +..++.++.... ..+|
T Consensus 346 EiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgN-p~elA~~l~a~lV~y--~~R---PVplErHlvf~~~e~eK 419 (830)
T COG1202 346 EIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGN-PEELAKKLGAKLVLY--DER---PVPLERHLVFARNESEK 419 (830)
T ss_pred eeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCC-hHHHHHHhCCeeEee--cCC---CCChhHeeeeecCchHH
Confidence 999776644 344555566667778999999999943 344666665444443 222 334445555554 6666
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcC
Q 013858 353 VDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSY 432 (435)
Q Consensus 353 ~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~ 432 (435)
.+.+.++.+.... ...+..-.|++|||.+++..|..|+..|...|+.+.+||+||+..+|..+...|.++++.++|+|-
T Consensus 420 ~~ii~~L~k~E~~-~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTA 498 (830)
T COG1202 420 WDIIARLVKREFS-TESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTA 498 (830)
T ss_pred HHHHHHHHHHHHh-hhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehh
Confidence 6666555543322 222225568899999999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q 013858 433 KL 434 (435)
Q Consensus 433 ~L 434 (435)
+|
T Consensus 499 AL 500 (830)
T COG1202 499 AL 500 (830)
T ss_pred hh
Confidence 76
No 62
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.1e-33 Score=239.50 Aligned_cols=253 Identities=31% Similarity=0.510 Sum_probs=222.2
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEc
Q 013858 122 SFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 201 (435)
Q Consensus 122 ~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~ 201 (435)
.|.++-|.+++++++...||..|..+|.+|||..+.|-|++++|..|.|||.+|.+.-++.+-.- +..-.++++|
T Consensus 43 gfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv-----~g~vsvlvmc 117 (387)
T KOG0329|consen 43 GFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPV-----DGQVSVLVMC 117 (387)
T ss_pred chhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCC-----CCeEEEEEEe
Confidence 38888899999999999999999999999999999999999999999999999988877765321 1135689999
Q ss_pred cChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcc
Q 013858 202 PTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRM 281 (435)
Q Consensus 202 P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~ 281 (435)
.||+||-|+.++..+|.++++++++...+||.........+.+-++|+|+|||+++.+..++.++++++..+|+||++.|
T Consensus 118 htrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkm 197 (387)
T KOG0329|consen 118 HTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKM 197 (387)
T ss_pred ccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHH
Confidence 99999999999999999999999999999999988877788888899999999999999999999999999999999977
Q ss_pred cC-CCCHHHHHHHHHhCCCCCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCCC-CCceEEEEEEcChhhHHHHHHHH
Q 013858 282 LD-MGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSP-TANVIQILEKVSENEKVDRLLAL 359 (435)
Q Consensus 282 ~~-~~~~~~i~~i~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~i~~~~~~~~~~~k~~~l~~~ 359 (435)
+. .++...+..|.+..|...|+.+||||++++++...+.|+++|..+.++..... .....|+|......+|...+.++
T Consensus 198 le~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~dL 277 (387)
T KOG0329|consen 198 LEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNRKLNDL 277 (387)
T ss_pred HHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhhhhhhh
Confidence 65 46888899999999999999999999999999999999999999988776543 45677888888888887777777
Q ss_pred HHHHHHhhhccCCCCCcEEEEeCchHHHH
Q 013858 360 LVEEAFLAEKSCHPFPLTIVFVERKTRCD 388 (435)
Q Consensus 360 l~~~~~~~~~~~~~~~~~lVF~~~~~~~~ 388 (435)
+.- ....+++||+.+.....
T Consensus 278 Ld~---------LeFNQVvIFvKsv~Rl~ 297 (387)
T KOG0329|consen 278 LDV---------LEFNQVVIFVKSVQRLS 297 (387)
T ss_pred hhh---------hhhcceeEeeehhhhhh
Confidence 654 23446999999887754
No 63
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.98 E-value=3.5e-30 Score=269.27 Aligned_cols=291 Identities=21% Similarity=0.270 Sum_probs=221.9
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHH
Q 013858 129 HPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQ 208 (435)
Q Consensus 129 ~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~ 208 (435)
...+...+.+.|+..|+.+|.+|+..+.+|+|+||+.+||||||.+|++|++..++... ..++|+|.||++||+
T Consensus 56 ~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~------~a~AL~lYPtnALa~ 129 (851)
T COG1205 56 DESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDP------SARALLLYPTNALAN 129 (851)
T ss_pred hhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCc------CccEEEEechhhhHh
Confidence 44457888999999999999999999999999999999999999999999999988853 347899999999999
Q ss_pred HHHHHHHHHhhcCC-CceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCC----CCCCCceEEEEecCCcccC
Q 013858 209 QIEKEVKALSRSLD-SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGN----TSLSRVSFVILDEADRMLD 283 (435)
Q Consensus 209 q~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~----~~l~~~~~iIiDEah~~~~ 283 (435)
.+.++++++...++ +++...+.|++...+......+.++|++|||.||...+.... +.++++++||+||+|..-.
T Consensus 130 DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrG 209 (851)
T COG1205 130 DQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRG 209 (851)
T ss_pred hHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccc
Confidence 99999999998876 688888888888887777788999999999999988665542 3467899999999994321
Q ss_pred CCCHHHHH----HH---HHhCCCCCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEEEcC--------
Q 013858 284 MGFEPQIR----EV---MQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVS-------- 348 (435)
Q Consensus 284 ~~~~~~i~----~i---~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~-------- 348 (435)
-|+..+. ++ +...+...|+|.+|||+. ....+++.+++......+.....+..........-.
T Consensus 210 -v~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~-np~e~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~~~ 287 (851)
T COG1205 210 -VQGSEVALLLRRLLRRLRRYGSPLQIICTSATLA-NPGEFAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELAESI 287 (851)
T ss_pred -cchhHHHHHHHHHHHHHhccCCCceEEEEecccc-ChHHHHHHhcCCcceeeccCCCCCCCceEEEEeCCcchhhhhhc
Confidence 2343333 33 333456889999999995 344567777776666544443333333333222220
Q ss_pred hhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHH----HHHHhCC----CcEEEecCCCCHHHHHHHHHHH
Q 013858 349 ENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVS----EALVAEG----LHAVALHGGRNQSDRESALRDF 420 (435)
Q Consensus 349 ~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~----~~L~~~~----~~v~~lh~~~~~~~R~~~~~~f 420 (435)
...+...+..+....... +-++|+|+.++..++.+. ..+...+ ..+..++|++..++|.++...|
T Consensus 288 r~s~~~~~~~~~~~~~~~-------~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~ 360 (851)
T COG1205 288 RRSALAELATLAALLVRN-------GIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEF 360 (851)
T ss_pred ccchHHHHHHHHHHHHHc-------CceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHH
Confidence 123333333333333322 235999999999999997 4555555 6799999999999999999999
Q ss_pred HcCCCcEEEEcCCC
Q 013858 421 RNGSTNILVFSYKL 434 (435)
Q Consensus 421 ~~g~~~VLVaT~~L 434 (435)
+.|+..++++|++|
T Consensus 361 ~~g~~~~~~st~Al 374 (851)
T COG1205 361 KEGELLGVIATNAL 374 (851)
T ss_pred hcCCccEEecchhh
Confidence 99999999999986
No 64
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.97 E-value=8.1e-30 Score=247.89 Aligned_cols=262 Identities=19% Similarity=0.222 Sum_probs=204.7
Q ss_pred cHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhc-C-C
Q 013858 145 TSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRS-L-D 222 (435)
Q Consensus 145 ~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~-~-~ 222 (435)
+.+-.+.+..+.+++.+|+.|+||||||+ ++|++....+.. ..+++.+++|+|..|..+++++..-... . .
T Consensus 53 ~~~r~~il~~ve~nqvlIviGeTGsGKST--QipQyL~eaG~~-----~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~ 125 (674)
T KOG0922|consen 53 YKYRDQILYAVEDNQVLIVIGETGSGKST--QIPQYLAEAGFA-----SSGKIACTQPRRVAAVSLAKRVAEEMGCQLGE 125 (674)
T ss_pred HHHHHHHHHHHHHCCEEEEEcCCCCCccc--cHhHHHHhcccc-----cCCcEEeecCchHHHHHHHHHHHHHhCCCcCc
Confidence 45566777778888999999999999999 899887765542 1345999999999999998888554322 1 2
Q ss_pred CceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCC-cccCCCCHHHHHHHHHhCCCCC
Q 013858 223 SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEAD-RMLDMGFEPQIREVMQNLPDKH 301 (435)
Q Consensus 223 ~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah-~~~~~~~~~~i~~i~~~~~~~~ 301 (435)
.+.+.+.+.+... ..+.|+|+|+|+|++++.. +-.|++|++||||||| |.+..+..-.+.+-+...++++
T Consensus 126 ~VGY~IRFed~ts--------~~TrikymTDG~LLRE~l~-Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~~L 196 (674)
T KOG0922|consen 126 EVGYTIRFEDSTS--------KDTRIKYMTDGMLLREILK-DPLLSKYSVIILDEAHERSLHTDILLGLLKKILKKRPDL 196 (674)
T ss_pred eeeeEEEecccCC--------CceeEEEecchHHHHHHhc-CCccccccEEEEechhhhhhHHHHHHHHHHHHHhcCCCc
Confidence 4666677766532 3479999999999999987 5579999999999999 9988887766666666667889
Q ss_pred eEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEe
Q 013858 302 QTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFV 381 (435)
Q Consensus 302 q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~ 381 (435)
++|+||||+. .+.+.+.|...|+....++ ...++..+..-+..+..+..+..+.+++.. .+++-+|||+
T Consensus 197 klIimSATld--a~kfS~yF~~a~i~~i~GR----~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~-----E~~GDILvFL 265 (674)
T KOG0922|consen 197 KLIIMSATLD--AEKFSEYFNNAPILTIPGR----TFPVEILYLKEPTADYVDAALITVIQIHLT-----EPPGDILVFL 265 (674)
T ss_pred eEEEEeeeec--HHHHHHHhcCCceEeecCC----CCceeEEeccCCchhhHHHHHHHHHHHHcc-----CCCCCEEEEe
Confidence 9999999994 4545566655566655443 556777777766777777666666655543 5667799999
Q ss_pred CchHHHHHHHHHHHhC----C----CcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCC
Q 013858 382 ERKTRCDEVSEALVAE----G----LHAVALHGGRNQSDRESALRDFRNGSTNILVFSYK 433 (435)
Q Consensus 382 ~~~~~~~~l~~~L~~~----~----~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~ 433 (435)
+++++++.+++.|.+. + .-+.++||.|+.+++.++++.-..|..||++|||+
T Consensus 266 tGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNI 325 (674)
T KOG0922|consen 266 TGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNI 325 (674)
T ss_pred CCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcce
Confidence 9999999999999875 1 13578999999999999999999999999999997
No 65
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.97 E-value=4.2e-30 Score=253.08 Aligned_cols=269 Identities=22% Similarity=0.341 Sum_probs=203.2
Q ss_pred HHCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHH
Q 013858 137 EFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 216 (435)
Q Consensus 137 ~~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~ 216 (435)
..+|+..+++-|.++|..++.|+|+++..|||.||+++|++|++.. .+..|||.|..+|...+.+.++.
T Consensus 11 ~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~-----------~G~TLVVSPLiSLM~DQV~~l~~ 79 (590)
T COG0514 11 QVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL-----------EGLTLVVSPLISLMKDQVDQLEA 79 (590)
T ss_pred HHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc-----------CCCEEEECchHHHHHHHHHHHHH
Confidence 3468999999999999999999999999999999999999999876 24699999999998877777666
Q ss_pred HhhcCCCceEEEEECCCCHHHHHHH---H-hCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCC--CHHHH
Q 013858 217 LSRSLDSFKTAIVVGGTNIAEQRSE---L-RGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG--FEPQI 290 (435)
Q Consensus 217 ~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~--~~~~i 290 (435)
. ++.+..+.+.-+..+.... + ....++++-+|++|..-.....+.--++.+++|||||++.+|| |++.+
T Consensus 80 ~-----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y 154 (590)
T COG0514 80 A-----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDY 154 (590)
T ss_pred c-----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhH
Confidence 4 5777777777665544322 2 3447999999999965443333345678999999999999998 88876
Q ss_pred HHH---HHhCCCCCeEEEEcccccHHHHHHHHHHcC-CCeEEEeCCCCCCCCceEEEEEEcC-hhhHHHHHHHHHHHHHH
Q 013858 291 REV---MQNLPDKHQTLLFSATMPVEIEALAQEYLT-DPVQVKVGKVSSPTANVIQILEKVS-ENEKVDRLLALLVEEAF 365 (435)
Q Consensus 291 ~~i---~~~~~~~~q~i~~SATl~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~i~~~~~~~~-~~~k~~~l~~~l~~~~~ 365 (435)
..+ ...++ +.+++++|||.++.+...+...+. +...+....... +++........ ...+.. .+.+ .
T Consensus 155 ~~lg~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdR--pNi~~~v~~~~~~~~q~~----fi~~--~ 225 (590)
T COG0514 155 RRLGRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDR--PNLALKVVEKGEPSDQLA----FLAT--V 225 (590)
T ss_pred HHHHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCC--chhhhhhhhcccHHHHHH----HHHh--h
Confidence 655 44455 677999999999988887766654 221222222222 22222222221 222222 2222 0
Q ss_pred hhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 366 LAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 366 ~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
.+ ...+..||||.|++.++.+++.|+..|+.+..|||||+.++|+.+.++|..++.+|+|||.++
T Consensus 226 ~~----~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AF 290 (590)
T COG0514 226 LP----QLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAF 290 (590)
T ss_pred cc----ccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccc
Confidence 11 445568999999999999999999999999999999999999999999999999999999875
No 66
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.97 E-value=5.1e-30 Score=249.25 Aligned_cols=255 Identities=18% Similarity=0.148 Sum_probs=168.4
Q ss_pred CEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHH---
Q 013858 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIA--- 236 (435)
Q Consensus 160 ~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~--- 236 (435)
++++++|||||||++|++|++..+... .+.+++|++|+++|+.|++++++.+... ..+.++++....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~------~~~~ii~v~P~~~L~~q~~~~l~~~f~~----~~~~~~~~~~~~~~~ 70 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQ------KADRVIIALPTRATINAMYRRAKELFGS----NLGLLHSSSSFKRIK 70 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhC------CCCeEEEEeehHHHHHHHHHHHHHHhCc----ccEEeeccHHHHHHh
Confidence 589999999999999999998775432 2578999999999999999999887532 233344432210
Q ss_pred ---------HHHHHHh------CCCcEEEECcHHHHHHHHcCC----CC--CCCceEEEEecCCcccCCCCHHHHHHHHH
Q 013858 237 ---------EQRSELR------GGVSIVVATPGRFLDHLQQGN----TS--LSRVSFVILDEADRMLDMGFEPQIREVMQ 295 (435)
Q Consensus 237 ---------~~~~~~~------~~~~I~v~T~~~l~~~l~~~~----~~--l~~~~~iIiDEah~~~~~~~~~~i~~i~~ 295 (435)
....... -...|+|+||+.++..+.... .. .-..++|||||||++.+.++.. +..++.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~ 149 (358)
T TIGR01587 71 EMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLE 149 (358)
T ss_pred ccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHH
Confidence 0000010 135799999999988776521 01 1124799999999987754433 444444
Q ss_pred hCC-CCCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEEEc--ChhhHHHHHHHHHHHHHHhhhccCC
Q 013858 296 NLP-DKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKV--SENEKVDRLLALLVEEAFLAEKSCH 372 (435)
Q Consensus 296 ~~~-~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~--~~~~k~~~l~~~l~~~~~~~~~~~~ 372 (435)
.+. .+.|+++||||+|..+..+...+...+.......... .....+.+... ....+...+...+.. . .
T Consensus 150 ~l~~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~-------~ 220 (358)
T TIGR01587 150 VLKDNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKEE-RRFERHRFIKIESDKVGEISSLERLLEF-I-------K 220 (358)
T ss_pred HHHHcCCCEEEEecCchHHHHHHHhcCCCcccccCCCCccc-cccccccceeeccccccCHHHHHHHHHH-h-------h
Confidence 443 4689999999999777666655533221111110000 00011222111 112233333333322 1 2
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCC--cEEEecCCCCHHHHHHH----HHHHHcCCCcEEEEcCCC
Q 013858 373 PFPLTIVFVERKTRCDEVSEALVAEGL--HAVALHGGRNQSDRESA----LRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 373 ~~~~~lVF~~~~~~~~~l~~~L~~~~~--~v~~lh~~~~~~~R~~~----~~~f~~g~~~VLVaT~~L 434 (435)
.++++||||+++++|+.+++.|++.+. .+..+||++++.+|.++ ++.|++|+.+|||||+++
T Consensus 221 ~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~ 288 (358)
T TIGR01587 221 KGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVI 288 (358)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcch
Confidence 345799999999999999999988765 59999999999999764 899999999999999975
No 67
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.97 E-value=2.5e-29 Score=253.01 Aligned_cols=264 Identities=15% Similarity=0.115 Sum_probs=181.9
Q ss_pred CCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhc
Q 013858 141 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRS 220 (435)
Q Consensus 141 ~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~ 220 (435)
...|+++|.++++.++.++++++++|||+|||+++.. +........ ..++||++||++|+.||.+.+++++..
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~-l~~~~~~~~------~~~vLilvpt~eL~~Q~~~~l~~~~~~ 184 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYL-LSRYYLENY------EGKVLIIVPTTSLVTQMIDDFVDYRLF 184 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHH-HHHHHHhcC------CCeEEEEECcHHHHHHHHHHHHHhccc
Confidence 3589999999999999999999999999999986533 222222221 348999999999999999999998743
Q ss_pred CCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCCCHHHHHHHHHhCCCC
Q 013858 221 LDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDK 300 (435)
Q Consensus 221 ~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~ 300 (435)
. ...+..+.+|.... .+.+|+|+|++.+.+... ..+.++++||+||||++.. ..+..++..+++.
T Consensus 185 ~-~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~~----~~~~~il~~~~~~ 249 (501)
T PHA02558 185 P-REAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFTG----KSLTSIITKLDNC 249 (501)
T ss_pred c-ccceeEEecCcccC-------CCCCEEEeeHHHHhhchh---hhccccCEEEEEchhcccc----hhHHHHHHhhhcc
Confidence 2 34555666665322 347899999999976542 2467899999999998864 3566777777777
Q ss_pred CeEEEEcccccHHHHHH--HHHHcCCCeEEEeCCCC------CCCCceEEEEEE---------------------cChhh
Q 013858 301 HQTLLFSATMPVEIEAL--AQEYLTDPVQVKVGKVS------SPTANVIQILEK---------------------VSENE 351 (435)
Q Consensus 301 ~q~i~~SATl~~~~~~~--~~~~~~~~~~i~~~~~~------~~~~~i~~~~~~---------------------~~~~~ 351 (435)
.++++||||+....... ...+++ ++...+.... .....+...... .....
T Consensus 250 ~~~lGLTATp~~~~~~~~~~~~~fG-~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 328 (501)
T PHA02558 250 KFKFGLTGSLRDGKANILQYVGLFG-DIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTK 328 (501)
T ss_pred ceEEEEeccCCCccccHHHHHHhhC-CceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHH
Confidence 88999999996543211 111222 2221111000 000000000000 01111
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEc
Q 013858 352 KVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVFS 431 (435)
Q Consensus 352 k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT 431 (435)
+...+...+.... ..+.++||||++.++++.|++.|+..|.++..+||++++++|..+++.|++|+..|||||
T Consensus 329 Rn~~I~~~~~~~~-------~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT 401 (501)
T PHA02558 329 RNKWIANLALKLA-------KKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVAS 401 (501)
T ss_pred HHHHHHHHHHHHH-------hcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEE
Confidence 2222222222222 234569999999999999999999999999999999999999999999999999999998
Q ss_pred -CCC
Q 013858 432 -YKL 434 (435)
Q Consensus 432 -~~L 434 (435)
++|
T Consensus 402 ~~~l 405 (501)
T PHA02558 402 YGVF 405 (501)
T ss_pred ccee
Confidence 553
No 68
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.97 E-value=1.3e-28 Score=237.33 Aligned_cols=268 Identities=18% Similarity=0.143 Sum_probs=181.0
Q ss_pred HHHHHHHHHhcCCC--EEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcC---
Q 013858 147 IQAQAMPVALSGRD--LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL--- 221 (435)
Q Consensus 147 ~Q~~~i~~~~~~~~--vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~--- 221 (435)
+|.++++++.++++ +++++|||+|||++|++|++.. +.++++++|+++|+.|++++++.+...+
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~-----------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~ 69 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG-----------ENDTIALYPTNALIEDQTEAIKEFVDVFKPE 69 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc-----------CCCEEEEeChHHHHHHHHHHHHHHHHhcCCC
Confidence 49999999998874 8899999999999999988742 3458999999999999999998887543
Q ss_pred CCceEEEEECCCCHH--HHH------------------HHHhCCCcEEEECcHHHHHHHHcC---C-----CCCCCceEE
Q 013858 222 DSFKTAIVVGGTNIA--EQR------------------SELRGGVSIVVATPGRFLDHLQQG---N-----TSLSRVSFV 273 (435)
Q Consensus 222 ~~~~~~~~~g~~~~~--~~~------------------~~~~~~~~I~v~T~~~l~~~l~~~---~-----~~l~~~~~i 273 (435)
.++.+..+.|.+... ... ......+.|+++||++|..++... . ..+..+++|
T Consensus 70 ~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~i 149 (357)
T TIGR03158 70 RDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTV 149 (357)
T ss_pred CCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEE
Confidence 245566666643221 000 011235789999999997655321 1 125789999
Q ss_pred EEecCCcccCCC-----CHHHHHHHHHhCCCCCeEEEEcccccHHHHHHHHHH--cCCCeEEEeCCC-----------CC
Q 013858 274 ILDEADRMLDMG-----FEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEY--LTDPVQVKVGKV-----------SS 335 (435)
Q Consensus 274 IiDEah~~~~~~-----~~~~i~~i~~~~~~~~q~i~~SATl~~~~~~~~~~~--~~~~~~i~~~~~-----------~~ 335 (435)
||||+|.+...+ +......++.......++++||||+++.+...++.. ++.++.+..+.. ..
T Consensus 150 V~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~ 229 (357)
T TIGR03158 150 IFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADN 229 (357)
T ss_pred EEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccc
Confidence 999999765322 111233333333335689999999999888877765 555554433330 00
Q ss_pred -------CCCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCC--CcEEEecC
Q 013858 336 -------PTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEG--LHAVALHG 406 (435)
Q Consensus 336 -------~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~--~~v~~lh~ 406 (435)
..+.+.+.+.. ....+...+...+.......++ .+++++||||++++.++.+++.|++.+ +.+..+||
T Consensus 230 ~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~--~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g 306 (357)
T TIGR03158 230 KTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQ--LPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITG 306 (357)
T ss_pred cccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhc--cCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeec
Confidence 01244444444 3333443333333222211111 345679999999999999999999864 57889999
Q ss_pred CCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 407 GRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 407 ~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
.+++.+|.++ ++.+||||||++
T Consensus 307 ~~~~~~R~~~------~~~~iLVaTdv~ 328 (357)
T TIGR03158 307 FAPKKDRERA------MQFDILLGTSTV 328 (357)
T ss_pred CCCHHHHHHh------ccCCEEEEecHH
Confidence 9999988754 478999999975
No 69
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.97 E-value=4.6e-29 Score=265.00 Aligned_cols=257 Identities=18% Similarity=0.265 Sum_probs=176.4
Q ss_pred HHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhc-CC-Cc
Q 013858 147 IQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRS-LD-SF 224 (435)
Q Consensus 147 ~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~-~~-~~ 224 (435)
+..+.+..+..++.+|++|+||||||+ ++|.+...... +..+.++++.|+|..|..++.++.+.... .. .+
T Consensus 78 ~r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g~-----g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~V 150 (1294)
T PRK11131 78 KKQDILEAIRDHQVVIVAGETGSGKTT--QLPKICLELGR-----GVKGLIGHTQPRRLAARTVANRIAEELETELGGCV 150 (1294)
T ss_pred HHHHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcCC-----CCCCceeeCCCcHHHHHHHHHHHHHHHhhhhccee
Confidence 344455555567779999999999999 78977665432 12346777889886666666665443321 10 11
Q ss_pred eEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCC-cccCCCCHHH-HHHHHHhCCCCCe
Q 013858 225 KTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEAD-RMLDMGFEPQ-IREVMQNLPDKHQ 302 (435)
Q Consensus 225 ~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah-~~~~~~~~~~-i~~i~~~~~~~~q 302 (435)
.+.+.+.. ....+++|+|||||+|++++... ..+.++++||||||| |+++.+|... +..++. .+++.|
T Consensus 151 GY~vrf~~--------~~s~~t~I~v~TpG~LL~~l~~d-~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~-~rpdlK 220 (1294)
T PRK11131 151 GYKVRFND--------QVSDNTMVKLMTDGILLAEIQQD-RLLMQYDTIIIDEAHERSLNIDFILGYLKELLP-RRPDLK 220 (1294)
T ss_pred ceeecCcc--------ccCCCCCEEEEChHHHHHHHhcC-CccccCcEEEecCccccccccchHHHHHHHhhh-cCCCce
Confidence 12221111 12456899999999999999764 459999999999999 8999998764 333332 345789
Q ss_pred EEEEcccccHHHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEEEcCh------hhHHHHHHHHHHHHHHhhhccCCCCCc
Q 013858 303 TLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSE------NEKVDRLLALLVEEAFLAEKSCHPFPL 376 (435)
Q Consensus 303 ~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~------~~k~~~l~~~l~~~~~~~~~~~~~~~~ 376 (435)
+|+||||++. +.+.+.|...|+ +.+... ...+.+.+..... .++...++..+.... . .+++.
T Consensus 221 vILmSATid~--e~fs~~F~~apv-I~V~Gr---~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~----~--~~~Gd 288 (1294)
T PRK11131 221 VIITSATIDP--ERFSRHFNNAPI-IEVSGR---TYPVEVRYRPIVEEADDTERDQLQAIFDAVDELG----R--EGPGD 288 (1294)
T ss_pred EEEeeCCCCH--HHHHHHcCCCCE-EEEcCc---cccceEEEeecccccchhhHHHHHHHHHHHHHHh----c--CCCCC
Confidence 9999999974 456666655564 444322 2345555555432 123333333332222 1 35577
Q ss_pred EEEEeCchHHHHHHHHHHHhCCCc---EEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 377 TIVFVERKTRCDEVSEALVAEGLH---AVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 377 ~lVF~~~~~~~~~l~~~L~~~~~~---v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
+||||+++.+++.+++.|+..++. +..+||++++++|..+++. .|..+||||||+.
T Consensus 289 ILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIA 347 (1294)
T PRK11131 289 ILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVA 347 (1294)
T ss_pred EEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHH
Confidence 999999999999999999987654 7899999999999999986 5889999999974
No 70
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.96 E-value=1.9e-28 Score=251.63 Aligned_cols=263 Identities=20% Similarity=0.227 Sum_probs=195.9
Q ss_pred cHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcCCC-
Q 013858 145 TSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDS- 223 (435)
Q Consensus 145 ~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~~~- 223 (435)
+....+.+.++.+++.+||+|+||||||+ ++|.+...... ..+++++++.|+|..|..+++++.+......+
T Consensus 52 ~~~~~~i~~ai~~~~vvii~getGsGKTT--qlP~~lle~g~-----~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~ 124 (845)
T COG1643 52 TAVRDEILKAIEQNQVVIIVGETGSGKTT--QLPQFLLEEGL-----GIAGKIGCTQPRRLAARSVAERVAEELGEKLGE 124 (845)
T ss_pred HHHHHHHHHHHHhCCEEEEeCCCCCChHH--HHHHHHHhhhc-----ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCc
Confidence 44455555666678889999999999999 78887765543 23568999999999999998888555433222
Q ss_pred -ceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCC-cccCCCCHHHHHH-HHHhCCCC
Q 013858 224 -FKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEAD-RMLDMGFEPQIRE-VMQNLPDK 300 (435)
Q Consensus 224 -~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah-~~~~~~~~~~i~~-i~~~~~~~ 300 (435)
+.+.+.+.+. ...+++|.|||.|+|+++++. +..|+.|++||||||| |.++.++.-.+.+ ++...+++
T Consensus 125 ~VGY~iRfe~~--------~s~~Trik~mTdGiLlrei~~-D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~D 195 (845)
T COG1643 125 TVGYSIRFESK--------VSPRTRIKVMTDGILLREIQN-DPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDD 195 (845)
T ss_pred eeeEEEEeecc--------CCCCceeEEeccHHHHHHHhh-CcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCC
Confidence 4445555443 345689999999999999987 5569999999999999 9999987765554 46777778
Q ss_pred CeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEE
Q 013858 301 HQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVF 380 (435)
Q Consensus 301 ~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF 380 (435)
+++|+||||+. .+.+.+.|...|+....++ ...+...|......+.. +...+......+.. ...|-+|||
T Consensus 196 LKiIimSATld--~~rfs~~f~~apvi~i~GR----~fPVei~Y~~~~~~d~~--l~~ai~~~v~~~~~--~~~GdILvF 265 (845)
T COG1643 196 LKLIIMSATLD--AERFSAYFGNAPVIEIEGR----TYPVEIRYLPEAEADYI--LLDAIVAAVDIHLR--EGSGSILVF 265 (845)
T ss_pred ceEEEEecccC--HHHHHHHcCCCCEEEecCC----ccceEEEecCCCCcchh--HHHHHHHHHHHhcc--CCCCCEEEE
Confidence 99999999994 4445555555565554443 34455555333332221 44444444433333 456779999
Q ss_pred eCchHHHHHHHHHHHh----CCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCC
Q 013858 381 VERKTRCDEVSEALVA----EGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYK 433 (435)
Q Consensus 381 ~~~~~~~~~l~~~L~~----~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~ 433 (435)
++++.+++.+++.|.+ ....+.++||.|+.+++.++++.-..|+.+|++|||+
T Consensus 266 LpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNI 322 (845)
T COG1643 266 LPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNI 322 (845)
T ss_pred CCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccc
Confidence 9999999999999997 3478999999999999999999999999999999997
No 71
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.96 E-value=5e-27 Score=221.77 Aligned_cols=167 Identities=24% Similarity=0.222 Sum_probs=130.8
Q ss_pred CCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhh
Q 013858 140 EYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSR 219 (435)
Q Consensus 140 ~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~ 219 (435)
+...++.||.......+.+ |++++.|||.|||+++++-+..++..+ ++++|+++||+.|+.|.++.+.++..
T Consensus 12 ~~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~-------~~kvlfLAPTKPLV~Qh~~~~~~v~~ 83 (542)
T COG1111 12 NTIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWF-------GGKVLFLAPTKPLVLQHAEFCRKVTG 83 (542)
T ss_pred ccccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhc-------CCeEEEecCCchHHHHHHHHHHHHhC
Confidence 3457788999988888766 999999999999999888777777664 34899999999999999999998874
Q ss_pred cCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCCCHHHHHHHHHhCCC
Q 013858 220 SLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPD 299 (435)
Q Consensus 220 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~ 299 (435)
- +.-.++.++|.....+. ...+...+|+|+||+.+.+.+..+.+++.++.++|||||||-....-...+.+.+....+
T Consensus 84 i-p~~~i~~ltGev~p~~R-~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k 161 (542)
T COG1111 84 I-PEDEIAALTGEVRPEER-EELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAK 161 (542)
T ss_pred C-ChhheeeecCCCChHHH-HHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhcc
Confidence 3 34566677776665544 445666899999999999999999999999999999999986654433344444444455
Q ss_pred CCeEEEEcccccHHHHH
Q 013858 300 KHQTLLFSATMPVEIEA 316 (435)
Q Consensus 300 ~~q~i~~SATl~~~~~~ 316 (435)
++.++++|||+..+.+.
T Consensus 162 ~~~ilgLTASPGs~~ek 178 (542)
T COG1111 162 NPLILGLTASPGSDLEK 178 (542)
T ss_pred CceEEEEecCCCCCHHH
Confidence 66799999999555443
No 72
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.96 E-value=5.2e-28 Score=257.91 Aligned_cols=256 Identities=18% Similarity=0.221 Sum_probs=180.0
Q ss_pred HHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcCCCceEEEE
Q 013858 150 QAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIV 229 (435)
Q Consensus 150 ~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~ 229 (435)
+.+..+..++.+|++|+||||||+ ++|.+...... +..++++++.|+|..|..++.++.+... ..++..
T Consensus 74 ~Il~~l~~~~vvii~g~TGSGKTT--qlPq~lle~~~-----~~~~~I~~tQPRRlAA~svA~RvA~elg----~~lG~~ 142 (1283)
T TIGR01967 74 DIAEAIAENQVVIIAGETGSGKTT--QLPKICLELGR-----GSHGLIGHTQPRRLAARTVAQRIAEELG----TPLGEK 142 (1283)
T ss_pred HHHHHHHhCceEEEeCCCCCCcHH--HHHHHHHHcCC-----CCCceEecCCccHHHHHHHHHHHHHHhC----CCcceE
Confidence 444455566789999999999999 78988765432 1234788889999999999888755442 333334
Q ss_pred ECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCC-cccCCCCHHH-HHHHHHhCCCCCeEEEEc
Q 013858 230 VGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEAD-RMLDMGFEPQ-IREVMQNLPDKHQTLLFS 307 (435)
Q Consensus 230 ~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah-~~~~~~~~~~-i~~i~~~~~~~~q~i~~S 307 (435)
+|+....+. ....+++|+|+|+|+|++++... ..+.++++||||||| |+++.+|... +..++ ..++++|+|+||
T Consensus 143 VGY~vR~~~--~~s~~T~I~~~TdGiLLr~l~~d-~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il-~~rpdLKlIlmS 218 (1283)
T TIGR01967 143 VGYKVRFHD--QVSSNTLVKLMTDGILLAETQQD-RFLSRYDTIIIDEAHERSLNIDFLLGYLKQLL-PRRPDLKIIITS 218 (1283)
T ss_pred EeeEEcCCc--ccCCCceeeeccccHHHHHhhhC-cccccCcEEEEcCcchhhccchhHHHHHHHHH-hhCCCCeEEEEe
Confidence 443211111 12456899999999999998764 468999999999999 8999998776 44454 345689999999
Q ss_pred ccccHHHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEEEcCh------hhHHHHHHHHHHHHHHhhhccCCCCCcEEEEe
Q 013858 308 ATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSE------NEKVDRLLALLVEEAFLAEKSCHPFPLTIVFV 381 (435)
Q Consensus 308 ATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~------~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~ 381 (435)
||++. +.+.+.|...|+. .+... ...+...+..... .++...+...+..... ..++.+||||
T Consensus 219 ATld~--~~fa~~F~~apvI-~V~Gr---~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~------~~~GdILVFL 286 (1283)
T TIGR01967 219 ATIDP--ERFSRHFNNAPII-EVSGR---TYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFA------EGPGDILIFL 286 (1283)
T ss_pred CCcCH--HHHHHHhcCCCEE-EECCC---cccceeEEecccccccchhhhHHHHHHHHHHHHHh------hCCCCEEEeC
Confidence 99964 4566666555653 33322 2234444443321 1344445555544332 2346799999
Q ss_pred CchHHHHHHHHHHHhCC---CcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 382 ERKTRCDEVSEALVAEG---LHAVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 382 ~~~~~~~~l~~~L~~~~---~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
+++.+++.+++.|++.+ +.+..+||++++++|.++++.+ +..+||||||+.
T Consensus 287 pg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIA 340 (1283)
T TIGR01967 287 PGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVA 340 (1283)
T ss_pred CCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHH
Confidence 99999999999998764 4689999999999999997654 347999999974
No 73
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=8.7e-29 Score=238.55 Aligned_cols=268 Identities=18% Similarity=0.209 Sum_probs=211.5
Q ss_pred CCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHH-Hh
Q 013858 140 EYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA-LS 218 (435)
Q Consensus 140 ~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~-~~ 218 (435)
.....+++-.+.+.++..++.+||.|+||||||+ ++|++.+..++.. .|.++.+++|+|..|..++.++.+ ++
T Consensus 262 ksLPVy~ykdell~av~e~QVLiI~GeTGSGKTT--QiPQyL~EaGytk----~gk~IgcTQPRRVAAmSVAaRVA~EMg 335 (902)
T KOG0923|consen 262 KSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTT--QIPQYLYEAGYTK----GGKKIGCTQPRRVAAMSVAARVAEEMG 335 (902)
T ss_pred hcCCchhhHHHHHHHHHhCcEEEEEcCCCCCccc--cccHHHHhccccc----CCceEeecCcchHHHHHHHHHHHHHhC
Confidence 3445577888888999999999999999999999 8999988776532 245599999999999999877754 43
Q ss_pred hcC-CCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCC-cccCCCCHHHHHHHHHh
Q 013858 219 RSL-DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEAD-RMLDMGFEPQIREVMQN 296 (435)
Q Consensus 219 ~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah-~~~~~~~~~~i~~i~~~ 296 (435)
..+ ..+.+.+.+.+. ....+-|.+||+|+|++.+.. ...|..|++||||||| |.+..+.+-.+.+-+..
T Consensus 336 vkLG~eVGYsIRFEdc--------TSekTvlKYMTDGmLlREfL~-epdLasYSViiiDEAHERTL~TDILfgLvKDIar 406 (902)
T KOG0923|consen 336 VKLGHEVGYSIRFEDC--------TSEKTVLKYMTDGMLLREFLS-EPDLASYSVIIVDEAHERTLHTDILFGLVKDIAR 406 (902)
T ss_pred cccccccceEEEeccc--------cCcceeeeeecchhHHHHHhc-cccccceeEEEeehhhhhhhhhhHHHHHHHHHHh
Confidence 222 123444444433 224478999999999999865 6789999999999999 99998888778887888
Q ss_pred CCCCCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCc
Q 013858 297 LPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPL 376 (435)
Q Consensus 297 ~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~ 376 (435)
+++++++|++|||+ +.+.+...|-..|+....++ ...+..+|...++.+.+++.+..+.+++.. .|.+-
T Consensus 407 ~RpdLKllIsSAT~--DAekFS~fFDdapIF~iPGR----RyPVdi~Yt~~PEAdYldAai~tVlqIH~t-----qp~GD 475 (902)
T KOG0923|consen 407 FRPDLKLLISSATM--DAEKFSAFFDDAPIFRIPGR----RYPVDIFYTKAPEADYLDAAIVTVLQIHLT-----QPLGD 475 (902)
T ss_pred hCCcceEEeecccc--CHHHHHHhccCCcEEeccCc----ccceeeecccCCchhHHHHHHhhheeeEec-----cCCcc
Confidence 89999999999999 34445444544566554443 456777888888888888887777665543 56677
Q ss_pred EEEEeCchHHHHHHHHHHHhC---------CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCC
Q 013858 377 TIVFVERKTRCDEVSEALVAE---------GLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYK 433 (435)
Q Consensus 377 ~lVF~~~~~~~~~l~~~L~~~---------~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~ 433 (435)
+|||..++++++.+.+.|... .+-+.++|+.++.+.+..|++.--.|..+|++|||+
T Consensus 476 ILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNI 541 (902)
T KOG0923|consen 476 ILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNI 541 (902)
T ss_pred EEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecc
Confidence 999999999999998888653 356899999999999999999999999999999997
No 74
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.96 E-value=8.2e-29 Score=228.14 Aligned_cols=242 Identities=25% Similarity=0.462 Sum_probs=185.2
Q ss_pred CCCeEEEEccChhhHHHHHHHHHHHhhcC--CCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCc
Q 013858 193 DGPLALVLAPTRELAQQIEKEVKALSRSL--DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRV 270 (435)
Q Consensus 193 ~~~~~lil~P~r~la~q~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~ 270 (435)
+.|.++|+-|.|+|+.|.++.+++|-.+. +.++..++.||...+.+...+..+++|+|+||+++++.+..+.+.+.++
T Consensus 285 Nap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~c 364 (725)
T KOG0349|consen 285 NAPEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHC 364 (725)
T ss_pred CCcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeee
Confidence 46889999999999999999888876554 3566668899999999999999999999999999999999989999999
Q ss_pred eEEEEecCCcccCCCCHHHHHHHHHhCCC------CCeEEEEcccccH-HHHHHHHHHcCCCeEEEeCCCCCCCCceEEE
Q 013858 271 SFVILDEADRMLDMGFEPQIREVMQNLPD------KHQTLLFSATMPV-EIEALAQEYLTDPVQVKVGKVSSPTANVIQI 343 (435)
Q Consensus 271 ~~iIiDEah~~~~~~~~~~i~~i~~~~~~------~~q~i~~SATl~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~ 343 (435)
+++|+|||+-++..++...+..+-..+|. .+|.+++|||+.. ++..+.++.+.-|.-+.+.........+.+.
T Consensus 365 rFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhv 444 (725)
T KOG0349|consen 365 RFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHV 444 (725)
T ss_pred EEEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhccc
Confidence 99999999999888888888777766653 6789999999832 4455666777777777766655555555444
Q ss_pred EEEcCh------------------------------hhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHH
Q 013858 344 LEKVSE------------------------------NEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEA 393 (435)
Q Consensus 344 ~~~~~~------------------------------~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~ 393 (435)
...+.. .+......++++....-+....+.-.+.||||.++..|+.|.++
T Consensus 445 v~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~ 524 (725)
T KOG0349|consen 445 VKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERM 524 (725)
T ss_pred eeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHH
Confidence 443311 01111111222110000000003345699999999999999999
Q ss_pred HHhCC---CcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 394 LVAEG---LHAVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 394 L~~~~---~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
+++.| +.|..+||+..+.+|.+.++.|+.+.++.|||||+-
T Consensus 525 ~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdva 568 (725)
T KOG0349|consen 525 MNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVA 568 (725)
T ss_pred HHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhh
Confidence 99874 689999999999999999999999999999999973
No 75
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=1.2e-27 Score=241.31 Aligned_cols=289 Identities=19% Similarity=0.259 Sum_probs=199.3
Q ss_pred HHHCCCCCCcHHHHHHHHHHhcC-CCEEEEccCCCchhHHhHHHHHHHHHhcC-CC-CCCCCCeEEEEccChhhHHHHHH
Q 013858 136 IEFHEYTRPTSIQAQAMPVALSG-RDLLGCAETGSGKTAAFTIPMIQHCVAQT-PV-GRGDGPLALVLAPTRELAQQIEK 212 (435)
Q Consensus 136 l~~~~~~~p~~~Q~~~i~~~~~~-~~vii~~~TGsGKT~~~~~~~l~~~~~~~-~~-~~~~~~~~lil~P~r~la~q~~~ 212 (435)
...++|..+..+|..++|.+.+. -|+|||||||+|||-.|++.++..+.... .. ...++-+++||+|.++||..+.+
T Consensus 103 k~~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~ 182 (1230)
T KOG0952|consen 103 KGFFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVD 182 (1230)
T ss_pred hhcccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHH
Confidence 35567888999999999999865 58999999999999999998888776421 11 11235789999999999999988
Q ss_pred HHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcC---CCCCCCceEEEEecCCcccCCCCHHH
Q 013858 213 EVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQG---NTSLSRVSFVILDEADRMLDMGFEPQ 289 (435)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~---~~~l~~~~~iIiDEah~~~~~~~~~~ 289 (435)
.|.+-...+ ++.+..++|++...... -..|+|+|+||+.+--.-.+. ...+..+.+|||||+|.+ ....++.
T Consensus 183 ~~~kkl~~~-gi~v~ELTGD~ql~~te---i~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlL-hd~RGpv 257 (1230)
T KOG0952|consen 183 KFSKKLAPL-GISVRELTGDTQLTKTE---IADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLL-HDDRGPV 257 (1230)
T ss_pred HHhhhcccc-cceEEEecCcchhhHHH---HHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhh-cCcccch
Confidence 885544444 79999999998765543 234899999999983222211 123567999999999955 4446666
Q ss_pred HHHHHHhC-------CCCCeEEEEcccccHHHHHHHHHHcCCCe--EEEeCCCCCCCCceEEEEEEcChh---hHHHHHH
Q 013858 290 IREVMQNL-------PDKHQTLLFSATMPVEIEALAQEYLTDPV--QVKVGKVSSPTANVIQILEKVSEN---EKVDRLL 357 (435)
Q Consensus 290 i~~i~~~~-------~~~~q~i~~SATl~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~i~~~~~~~~~~---~k~~~l~ 357 (435)
++.|+.+. ....++|++|||+|. .+++++..--+|. .+.++.... +..+.+.+.-.+.. .+...+.
T Consensus 258 lEtiVaRtlr~vessqs~IRivgLSATlPN-~eDvA~fL~vn~~~glfsFd~~yR-PvpL~~~~iG~k~~~~~~~~~~~d 335 (1230)
T KOG0952|consen 258 LETIVARTLRLVESSQSMIRIVGLSATLPN-YEDVARFLRVNPYAGLFSFDQRYR-PVPLTQGFIGIKGKKNRQQKKNID 335 (1230)
T ss_pred HHHHHHHHHHHHHhhhhheEEEEeeccCCC-HHHHHHHhcCCCccceeeeccccc-ccceeeeEEeeecccchhhhhhHH
Confidence 66665543 346789999999974 4445554433321 122222222 22334443332221 2222222
Q ss_pred HHHH-HHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCC-----------------------CcEEEecCCCCHHHH
Q 013858 358 ALLV-EEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEG-----------------------LHAVALHGGRNQSDR 413 (435)
Q Consensus 358 ~~l~-~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~-----------------------~~v~~lh~~~~~~~R 413 (435)
+... +..... ..+.+++|||.++++....|+.|.+.+ .....+|+||...+|
T Consensus 336 ~~~~~kv~e~~----~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR 411 (1230)
T KOG0952|consen 336 EVCYDKVVEFL----QEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDR 411 (1230)
T ss_pred HHHHHHHHHHH----HcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhH
Confidence 1111 111111 345579999999999999999997531 347889999999999
Q ss_pred HHHHHHHHcCCCcEEEEcCCCC
Q 013858 414 ESALRDFRNGSTNILVFSYKLL 435 (435)
Q Consensus 414 ~~~~~~f~~g~~~VLVaT~~L~ 435 (435)
..+.+.|+.|..+||+||..|.
T Consensus 412 ~l~E~~F~~G~i~vL~cTaTLA 433 (1230)
T KOG0952|consen 412 QLVEKEFKEGHIKVLCCTATLA 433 (1230)
T ss_pred HHHHHHHhcCCceEEEecceee
Confidence 9999999999999999999873
No 76
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=3.6e-26 Score=229.65 Aligned_cols=269 Identities=22% Similarity=0.187 Sum_probs=201.5
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcC
Q 013858 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (435)
Q Consensus 142 ~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~ 221 (435)
.+|+++|..+++.++.|+ |..+.||+|||++|.+|++..... |+.++|++||++||.|.++.+..+...+
T Consensus 102 ~~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~--------G~~v~VvTptreLA~qdae~~~~l~~~l 171 (656)
T PRK12898 102 QRHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALA--------GLPVHVITVNDYLAERDAELMRPLYEAL 171 (656)
T ss_pred CCCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhc--------CCeEEEEcCcHHHHHHHHHHHHHHHhhc
Confidence 579999999999999999 999999999999999999987554 6889999999999999999999999877
Q ss_pred CCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHH-HHHHHcC-------------------------CCCCCCceEEEE
Q 013858 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQG-------------------------NTSLSRVSFVIL 275 (435)
Q Consensus 222 ~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l-~~~l~~~-------------------------~~~l~~~~~iIi 275 (435)
++++.+++|+..... .....+++|+|+|..-| .+++... ....+.+.+.||
T Consensus 172 -Glsv~~i~gg~~~~~--r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIv 248 (656)
T PRK12898 172 -GLTVGCVVEDQSPDE--RRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIV 248 (656)
T ss_pred -CCEEEEEeCCCCHHH--HHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEe
Confidence 799999999986543 33456799999999877 3333221 122456889999
Q ss_pred ecCCc-ccCCC-----------CH---H---HHHHHHHhC----------------------------------------
Q 013858 276 DEADR-MLDMG-----------FE---P---QIREVMQNL---------------------------------------- 297 (435)
Q Consensus 276 DEah~-~~~~~-----------~~---~---~i~~i~~~~---------------------------------------- 297 (435)
||||. ++|.. .. . ....+...+
T Consensus 249 DEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~ 328 (656)
T PRK12898 249 DEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAV 328 (656)
T ss_pred ecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccch
Confidence 99994 33300 00 0 000000000
Q ss_pred ----------------C---------------------------------------------C----------------C
Q 013858 298 ----------------P---------------------------------------------D----------------K 300 (435)
Q Consensus 298 ----------------~---------------------------------------------~----------------~ 300 (435)
. + =
T Consensus 329 ~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y 408 (656)
T PRK12898 329 RREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRY 408 (656)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhh
Confidence 0 0 0
Q ss_pred CeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEE
Q 013858 301 HQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVF 380 (435)
Q Consensus 301 ~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF 380 (435)
.++.+||||.+...+++.+.|..+++.|....+. .....+.+.++...+|...+.+.+..... .+.++|||
T Consensus 409 ~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~--~r~~~~~~v~~t~~~K~~aL~~~i~~~~~-------~~~pvLIf 479 (656)
T PRK12898 409 LRLAGMTGTAREVAGELWSVYGLPVVRIPTNRPS--QRRHLPDEVFLTAAAKWAAVAARVRELHA-------QGRPVLVG 479 (656)
T ss_pred HHHhcccCcChHHHHHHHHHHCCCeEEeCCCCCc--cceecCCEEEeCHHHHHHHHHHHHHHHHh-------cCCCEEEE
Confidence 1458899999888888888888777666554433 22244456667788899988888866432 23459999
Q ss_pred eCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 381 VERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 381 ~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
|++++.++.+++.|++.|+++..+||++. +|+..+..|+.++.+|+||||+.
T Consensus 480 t~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~VlVATdmA 531 (656)
T PRK12898 480 TRSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGRITVATNMA 531 (656)
T ss_pred eCcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCcEEEEccch
Confidence 99999999999999999999999999855 56666667777777899999974
No 77
>PRK13766 Hef nuclease; Provisional
Probab=99.95 E-value=5.7e-26 Score=241.70 Aligned_cols=280 Identities=24% Similarity=0.284 Sum_probs=193.4
Q ss_pred CCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhh
Q 013858 140 EYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSR 219 (435)
Q Consensus 140 ~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~ 219 (435)
+...|++||.+.+..++.+ ++++++|||+|||.++++++...+.. .++++||++||++|+.|+.+.++++..
T Consensus 12 ~~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~-------~~~~vLvl~Pt~~L~~Q~~~~~~~~~~ 83 (773)
T PRK13766 12 NTIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHK-------KGGKVLILAPTKPLVEQHAEFFRKFLN 83 (773)
T ss_pred CcCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHh-------CCCeEEEEeCcHHHHHHHHHHHHHHhC
Confidence 3357899999999988887 99999999999999988877766532 257899999999999999999988764
Q ss_pred cCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCCCHHHHHHHHHhCCC
Q 013858 220 SLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPD 299 (435)
Q Consensus 220 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~ 299 (435)
. +...+..+.|+..... ......+.+|+|+||+.+...+..+.+.+.++++|||||||++.+......+...+.....
T Consensus 84 ~-~~~~v~~~~g~~~~~~-r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~ 161 (773)
T PRK13766 84 I-PEEKIVVFTGEVSPEK-RAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAK 161 (773)
T ss_pred C-CCceEEEEeCCCCHHH-HHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCC
Confidence 3 2357777777776554 3445566899999999998888777788899999999999988654333334444333344
Q ss_pred CCeEEEEcccccHH---HHHHHHHHcCCCeEEEeCCCCC-----CCCceEEEEEE-------------------------
Q 013858 300 KHQTLLFSATMPVE---IEALAQEYLTDPVQVKVGKVSS-----PTANVIQILEK------------------------- 346 (435)
Q Consensus 300 ~~q~i~~SATl~~~---~~~~~~~~~~~~~~i~~~~~~~-----~~~~i~~~~~~------------------------- 346 (435)
..++++||||+... +......+....+.+....... ....+......
T Consensus 162 ~~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~ 241 (773)
T PRK13766 162 NPLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKE 241 (773)
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56799999997322 2222222211111110000000 00000000000
Q ss_pred --------------------------------------------------------------------------------
Q 013858 347 -------------------------------------------------------------------------------- 346 (435)
Q Consensus 347 -------------------------------------------------------------------------------- 346 (435)
T Consensus 242 ~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~ 321 (773)
T PRK13766 242 LGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSK 321 (773)
T ss_pred CCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcH
Confidence
Q ss_pred ---------------------cChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEec
Q 013858 347 ---------------------VSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALH 405 (435)
Q Consensus 347 ---------------------~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh 405 (435)
.....|...|.+.+.+.... .++.++||||+++..|+.|++.|...|+.+..+|
T Consensus 322 ~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~-----~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~ 396 (773)
T PRK13766 322 ASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGK-----NPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFV 396 (773)
T ss_pred HHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhc-----CCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEE
Confidence 00011222233333222211 3567899999999999999999999999999999
Q ss_pred CC--------CCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 406 GG--------RNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 406 ~~--------~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
|. +++.+|..++++|++|+.+|||||+++
T Consensus 397 g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~ 433 (773)
T PRK13766 397 GQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVA 433 (773)
T ss_pred ccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChh
Confidence 86 999999999999999999999999964
No 78
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.95 E-value=4.2e-27 Score=234.59 Aligned_cols=177 Identities=23% Similarity=0.228 Sum_probs=135.3
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhH
Q 013858 128 LHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELA 207 (435)
Q Consensus 128 l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la 207 (435)
+++........-....++.||.+....++ |+|+||++|||+|||.++...++.++-... +.++++++|++-|+
T Consensus 47 ~~~s~~~~~~~p~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p------~~KiVF~aP~~pLv 119 (746)
T KOG0354|consen 47 LDESAAQRWIYPTNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRP------KGKVVFLAPTRPLV 119 (746)
T ss_pred CChhhhccccccCcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCC------cceEEEeeCCchHH
Confidence 44444444555556678999999999999 999999999999999999888888876643 47899999999999
Q ss_pred HHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCC-CCCCceEEEEecCCcccCCCC
Q 013858 208 QQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNT-SLSRVSFVILDEADRMLDMGF 286 (435)
Q Consensus 208 ~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~-~l~~~~~iIiDEah~~~~~~~ 286 (435)
.|....+..++.. .......||.........+....+|+|+||+.|.+.+..+.. .|+.+.+||||||||.....-
T Consensus 120 ~QQ~a~~~~~~~~---~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~ 196 (746)
T KOG0354|consen 120 NQQIACFSIYLIP---YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHP 196 (746)
T ss_pred HHHHHHHhhccCc---ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEccccccccccc
Confidence 9998777777643 566666777555555556777789999999999988877543 368899999999997765543
Q ss_pred HHHHH-HHHHhCCCCCeEEEEcccccHHH
Q 013858 287 EPQIR-EVMQNLPDKHQTLLFSATMPVEI 314 (435)
Q Consensus 287 ~~~i~-~i~~~~~~~~q~i~~SATl~~~~ 314 (435)
...+. ..+.......|+|++|||+....
T Consensus 197 Y~~Vmr~~l~~k~~~~qILgLTASpG~~~ 225 (746)
T KOG0354|consen 197 YNNIMREYLDLKNQGNQILGLTASPGSKL 225 (746)
T ss_pred HHHHHHHHHHhhhccccEEEEecCCCccH
Confidence 44444 55544444559999999985443
No 79
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.95 E-value=1.5e-26 Score=200.50 Aligned_cols=165 Identities=31% Similarity=0.569 Sum_probs=140.6
Q ss_pred cHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcCCCc
Q 013858 145 TSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSF 224 (435)
Q Consensus 145 ~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~~~~ 224 (435)
||+|.++++.+..|+++++.||||+|||++|++|++..+... ...++++++|+++|+.|+.+.+..++.. .++
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~------~~~~~lii~P~~~l~~q~~~~~~~~~~~-~~~ 73 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG------KDARVLIIVPTRALAEQQFERLRKFFSN-TNV 73 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT------SSSEEEEEESSHHHHHHHHHHHHHHTTT-TTS
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC------CCceEEEEeecccccccccccccccccc-ccc
Confidence 689999999999999999999999999999999999887662 1358999999999999999999999876 468
Q ss_pred eEEEEECCCCHH-HHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCCCHHHHHHHHHhCC--CCC
Q 013858 225 KTAIVVGGTNIA-EQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLP--DKH 301 (435)
Q Consensus 225 ~~~~~~g~~~~~-~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~--~~~ 301 (435)
++..++|+.... +....+..+++|+|+||++|.+.+......+.++++|||||+|.+...++...+..++..+. .+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~ 153 (169)
T PF00270_consen 74 RVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNI 153 (169)
T ss_dssp SEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTS
T ss_pred ccccccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCC
Confidence 999999988855 44445567799999999999999987655777799999999998888778888888888773 368
Q ss_pred eEEEEcccccHHHHH
Q 013858 302 QTLLFSATMPVEIEA 316 (435)
Q Consensus 302 q~i~~SATl~~~~~~ 316 (435)
|+++||||++..++.
T Consensus 154 ~~i~~SAT~~~~~~~ 168 (169)
T PF00270_consen 154 QIILLSATLPSNVEK 168 (169)
T ss_dssp EEEEEESSSTHHHHH
T ss_pred cEEEEeeCCChhHhh
Confidence 999999999866654
No 80
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.95 E-value=4.4e-27 Score=227.27 Aligned_cols=263 Identities=17% Similarity=0.179 Sum_probs=197.9
Q ss_pred CcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHh-hcC-
Q 013858 144 PTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS-RSL- 221 (435)
Q Consensus 144 p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~-~~~- 221 (435)
....+.+.+..+..++.|||+|+||||||+ ++|++.+..++. ..+++.+++|+|+.|..+++++.+-+ ..+
T Consensus 357 vf~~R~~ll~~ir~n~vvvivgETGSGKTT--Ql~QyL~edGY~-----~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG 429 (1042)
T KOG0924|consen 357 VFACRDQLLSVIRENQVVVIVGETGSGKTT--QLAQYLYEDGYA-----DNGMIGCTQPRRVAAISVAKRVAEEMGVTLG 429 (1042)
T ss_pred hHHHHHHHHHHHhhCcEEEEEecCCCCchh--hhHHHHHhcccc-----cCCeeeecCchHHHHHHHHHHHHHHhCCccc
Confidence 344555666666678889999999999999 889888877654 24689999999999999999885544 211
Q ss_pred CCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCC-cccCCCCHHHHHHHHHhCCCC
Q 013858 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEAD-RMLDMGFEPQIREVMQNLPDK 300 (435)
Q Consensus 222 ~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah-~~~~~~~~~~i~~i~~~~~~~ 300 (435)
..+.+.+.+.+... ..+.|.++|.|.|+++... +-.|.+|++||+|||| |.+|.+..-.+.+....-+.+
T Consensus 430 ~~VGYsIRFEdvT~--------~~T~IkymTDGiLLrEsL~-d~~L~kYSviImDEAHERslNtDilfGllk~~larRrd 500 (1042)
T KOG0924|consen 430 DTVGYSIRFEDVTS--------EDTKIKYMTDGILLRESLK-DRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRD 500 (1042)
T ss_pred cccceEEEeeecCC--------CceeEEEeccchHHHHHhh-hhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhcc
Confidence 13455555554422 3478999999999999766 4478999999999999 999988777777777777789
Q ss_pred CeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEE
Q 013858 301 HQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVF 380 (435)
Q Consensus 301 ~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF 380 (435)
+++|++|||+ +.+.+...|...|.....++ ...+...+...+.++.+...+..... .+.. .++|-+|||
T Consensus 501 lKliVtSATm--~a~kf~nfFgn~p~f~IpGR----TyPV~~~~~k~p~eDYVeaavkq~v~---Ihl~--~~~GdilIf 569 (1042)
T KOG0924|consen 501 LKLIVTSATM--DAQKFSNFFGNCPQFTIPGR----TYPVEIMYTKTPVEDYVEAAVKQAVQ---IHLS--GPPGDILIF 569 (1042)
T ss_pred ceEEEeeccc--cHHHHHHHhCCCceeeecCC----ccceEEEeccCchHHHHHHHHhhheE---eecc--CCCCCEEEe
Confidence 9999999999 44555555544565544333 34555666666666666555554433 3333 466779999
Q ss_pred eCchHHHHHHHHHHHhC----------CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCC
Q 013858 381 VERKTRCDEVSEALVAE----------GLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYK 433 (435)
Q Consensus 381 ~~~~~~~~~l~~~L~~~----------~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~ 433 (435)
.++++.++..+..++.. ++.|.++++.|++.-+.++++....|..+++||||+
T Consensus 570 mtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNI 632 (1042)
T KOG0924|consen 570 MTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNI 632 (1042)
T ss_pred cCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccc
Confidence 99998877776666431 578999999999999999999999999999999997
No 81
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.94 E-value=4.6e-25 Score=222.87 Aligned_cols=269 Identities=20% Similarity=0.226 Sum_probs=195.7
Q ss_pred CCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhc
Q 013858 141 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRS 220 (435)
Q Consensus 141 ~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~ 220 (435)
..+|+++|..+.+.++.|+ |..++||+|||++|.+|++...+. |..+.|++||+.||.|.++.+..+...
T Consensus 54 g~~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~--------G~~V~VvTpt~~LA~qdae~~~~l~~~ 123 (745)
T TIGR00963 54 GMRPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT--------GKGVHVVTVNDYLAQRDAEWMGQVYRF 123 (745)
T ss_pred CCCccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh--------CCCEEEEcCCHHHHHHHHHHHHHHhcc
Confidence 3578999999999988877 999999999999999999655444 456999999999999999999999988
Q ss_pred CCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHH-HHHHHcC------CCCCCCceEEEEecCCcccC---------C
Q 013858 221 LDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQG------NTSLSRVSFVILDEADRMLD---------M 284 (435)
Q Consensus 221 ~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l-~~~l~~~------~~~l~~~~~iIiDEah~~~~---------~ 284 (435)
+ ++++.+++|+.........+ .++|+|+||++| .+++..+ ...++.+.++||||||+++- .
T Consensus 124 L-GLsv~~i~g~~~~~~r~~~y--~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiis 200 (745)
T TIGR00963 124 L-GLSVGLILSGMSPEERREAY--ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIIS 200 (745)
T ss_pred C-CCeEEEEeCCCCHHHHHHhc--CCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhc
Confidence 7 79999999998876554444 489999999999 7777654 34678899999999996542 0
Q ss_pred C----C---HHHHHHHHHhCCC--------C-------------------------------------------------
Q 013858 285 G----F---EPQIREVMQNLPD--------K------------------------------------------------- 300 (435)
Q Consensus 285 ~----~---~~~i~~i~~~~~~--------~------------------------------------------------- 300 (435)
| . ......+...+.. +
T Consensus 201 g~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~ 280 (745)
T TIGR00963 201 GPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDV 280 (745)
T ss_pred CCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCC
Confidence 0 0 0000001000000 0
Q ss_pred ------------------------------------------------------------CeEEEEcccccHHHHHHHHH
Q 013858 301 ------------------------------------------------------------HQTLLFSATMPVEIEALAQE 320 (435)
Q Consensus 301 ------------------------------------------------------------~q~i~~SATl~~~~~~~~~~ 320 (435)
.++.+||.|...+..++.+-
T Consensus 281 dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~i 360 (745)
T TIGR00963 281 DYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKI 360 (745)
T ss_pred cEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHH
Confidence 13356666665444444444
Q ss_pred HcCCCeEEEeCCCCCCCCce-EEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCC
Q 013858 321 YLTDPVQVKVGKVSSPTANV-IQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGL 399 (435)
Q Consensus 321 ~~~~~~~i~~~~~~~~~~~i-~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~ 399 (435)
|--+ +.+. +...+.... .....+....+|...+.+.+.+.+. .+.++||||++.+.++.+++.|.+.|+
T Consensus 361 Y~l~-vv~I--Ptnkp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~-------~grpvLV~t~si~~se~ls~~L~~~gi 430 (745)
T TIGR00963 361 YNLE-VVVV--PTNRPVIRKDLSDLVYKTEEEKWKAVVDEIKERHA-------KGQPVLVGTTSVEKSELLSNLLKERGI 430 (745)
T ss_pred hCCC-EEEe--CCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHh-------cCCCEEEEeCcHHHHHHHHHHHHHcCC
Confidence 4322 2221 111111111 1123445667788888887766553 345699999999999999999999999
Q ss_pred cEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 400 HAVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 400 ~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
++..+|++ +.+|+..+..|+.+...|+||||+.
T Consensus 431 ~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmA 463 (745)
T TIGR00963 431 PHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMA 463 (745)
T ss_pred CeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccc
Confidence 99999999 8899999999999999999999974
No 82
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.94 E-value=5.2e-25 Score=223.83 Aligned_cols=269 Identities=18% Similarity=0.178 Sum_probs=181.4
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcCC
Q 013858 143 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 222 (435)
Q Consensus 143 ~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~~ 222 (435)
+|+++|..+...+..| .|+.++||+|||++|++|++...+. ++.++|++|+++||.|+++.+..+...+
T Consensus 70 rpydVQlig~l~l~~G--~Iaem~TGeGKTLta~Lpa~l~aL~--------g~~V~VVTpn~yLA~Rdae~m~~l~~~L- 138 (762)
T TIGR03714 70 FPYDVQVLGAIVLHQG--NIAEMKTGEGKTLTATMPLYLNALT--------GKGAMLVTTNDYLAKRDAEEMGPVYEWL- 138 (762)
T ss_pred CccHHHHHHHHHhcCC--ceeEecCCcchHHHHHHHHHHHhhc--------CCceEEeCCCHHHHHHHHHHHHHHHhhc-
Confidence 4555555555544444 7999999999999999998776554 5679999999999999999999999887
Q ss_pred CceEEEEECCCC---HHHHHHHHhCCCcEEEECcHHH-HHHHHc------CCCCCCCceEEEEecCCccc-CCC------
Q 013858 223 SFKTAIVVGGTN---IAEQRSELRGGVSIVVATPGRF-LDHLQQ------GNTSLSRVSFVILDEADRML-DMG------ 285 (435)
Q Consensus 223 ~~~~~~~~g~~~---~~~~~~~~~~~~~I~v~T~~~l-~~~l~~------~~~~l~~~~~iIiDEah~~~-~~~------ 285 (435)
++.+.+++++.. ..........+++|+|+||+.| .+++.. ....++.+.++||||||.++ +..
T Consensus 139 GLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartplii 218 (762)
T TIGR03714 139 GLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVI 218 (762)
T ss_pred CCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeee
Confidence 799988887632 2222233345799999999999 444422 13457889999999999763 200
Q ss_pred ---------CHHHHHHHHHhCCC--------C------------------------------------------------
Q 013858 286 ---------FEPQIREVMQNLPD--------K------------------------------------------------ 300 (435)
Q Consensus 286 ---------~~~~i~~i~~~~~~--------~------------------------------------------------ 300 (435)
+...+..+...+.+ +
T Consensus 219 sg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d 298 (762)
T TIGR03714 219 SGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRN 298 (762)
T ss_pred eCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcC
Confidence 11111122222211 0
Q ss_pred -------------------------------------------------------------CeEEEEcccccHHHHHHHH
Q 013858 301 -------------------------------------------------------------HQTLLFSATMPVEIEALAQ 319 (435)
Q Consensus 301 -------------------------------------------------------------~q~i~~SATl~~~~~~~~~ 319 (435)
.++.+||.|...+..++.+
T Consensus 299 ~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~ 378 (762)
T TIGR03714 299 KDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIE 378 (762)
T ss_pred CceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHH
Confidence 1234445554333333333
Q ss_pred HHcCCCeEEEeCCCCCCCCce-EEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCC
Q 013858 320 EYLTDPVQVKVGKVSSPTANV-IQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEG 398 (435)
Q Consensus 320 ~~~~~~~~i~~~~~~~~~~~i-~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~ 398 (435)
-|-- .+. .-+...+.... .....+....+|...+++.+.+.+ ..+.++||||++++.++.++..|.+.|
T Consensus 379 iY~l-~v~--~IPt~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~-------~~~~pvLIft~s~~~se~ls~~L~~~g 448 (762)
T TIGR03714 379 TYSL-SVV--KIPTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYH-------ETGQPVLLITGSVEMSEIYSELLLREG 448 (762)
T ss_pred HhCC-CEE--EcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHh-------hCCCCEEEEECcHHHHHHHHHHHHHCC
Confidence 3311 111 11111111111 112455677889999998887654 234569999999999999999999999
Q ss_pred CcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 399 LHAVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 399 ~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
+++..+||++.+.+|..+..+++.| +|+||||+.
T Consensus 449 i~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmA 482 (762)
T TIGR03714 449 IPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMA 482 (762)
T ss_pred CCEEEecCCChHHHHHHHHHcCCCC--eEEEEcccc
Confidence 9999999999998888887777666 799999974
No 83
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=1.1e-24 Score=223.48 Aligned_cols=269 Identities=16% Similarity=0.193 Sum_probs=189.4
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcC
Q 013858 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (435)
Q Consensus 142 ~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~ 221 (435)
..|+++|..+++.++.|+ |+.+.||+|||++|.+|++...+. |+.++|++||+.||.|.++.+..+...+
T Consensus 77 ~~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~--------G~~v~VvTpt~~LA~qd~e~~~~l~~~l 146 (790)
T PRK09200 77 MRPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALE--------GKGVHLITVNDYLAKRDAEEMGQVYEFL 146 (790)
T ss_pred CCCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHc--------CCCeEEEeCCHHHHHHHHHHHHHHHhhc
Confidence 489999999999998887 999999999999999999876554 6789999999999999999999999887
Q ss_pred CCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHH-HHHHHcC------CCCCCCceEEEEecCCccc-CCC--------
Q 013858 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQG------NTSLSRVSFVILDEADRML-DMG-------- 285 (435)
Q Consensus 222 ~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l-~~~l~~~------~~~l~~~~~iIiDEah~~~-~~~-------- 285 (435)
+++++++.|+.....+... ..+++|+|+||+.| .+++... ...++.+.++||||||+++ +..
T Consensus 147 -Gl~v~~i~g~~~~~~~r~~-~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliisg 224 (790)
T PRK09200 147 -GLTVGLNFSDIDDASEKKA-IYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISG 224 (790)
T ss_pred -CCeEEEEeCCCCcHHHHHH-hcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeeeC
Confidence 7999999999883333332 34589999999998 3433321 2356889999999999653 310
Q ss_pred -------CHHHHHHHHHhCCC--------CC-------------------------------------------------
Q 013858 286 -------FEPQIREVMQNLPD--------KH------------------------------------------------- 301 (435)
Q Consensus 286 -------~~~~i~~i~~~~~~--------~~------------------------------------------------- 301 (435)
....+..+...+.+ +.
T Consensus 225 ~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~d 304 (790)
T PRK09200 225 KPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVD 304 (790)
T ss_pred CCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCCc
Confidence 11111122222211 01
Q ss_pred ------------------------------------------------------------eEEEEcccccHHHHHHHHHH
Q 013858 302 ------------------------------------------------------------QTLLFSATMPVEIEALAQEY 321 (435)
Q Consensus 302 ------------------------------------------------------------q~i~~SATl~~~~~~~~~~~ 321 (435)
++.+||.|...+.+++.+-|
T Consensus 305 YiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~Y 384 (790)
T PRK09200 305 YIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEVY 384 (790)
T ss_pred EEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHHHh
Confidence 22344444433223332222
Q ss_pred cCCCeEEEeCCCCCCCCceE-EEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCc
Q 013858 322 LTDPVQVKVGKVSSPTANVI-QILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLH 400 (435)
Q Consensus 322 ~~~~~~i~~~~~~~~~~~i~-~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~ 400 (435)
-- .+. .-+...+..... ....+.....|...++..+.... ..+.++||||++.+.++.++..|.+.|++
T Consensus 385 ~l-~v~--~IPt~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~-------~~~~pvLIf~~t~~~se~l~~~L~~~gi~ 454 (790)
T PRK09200 385 NM-EVV--QIPTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERH-------ETGRPVLIGTGSIEQSETFSKLLDEAGIP 454 (790)
T ss_pred CC-cEE--ECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHH-------hcCCCEEEEeCcHHHHHHHHHHHHHCCCC
Confidence 11 111 111222211111 12344567788888888886643 23456999999999999999999999999
Q ss_pred EEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 401 AVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 401 v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
+..+||++.+.++..+...++.| +|+||||+.
T Consensus 455 ~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmA 486 (790)
T PRK09200 455 HNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMA 486 (790)
T ss_pred EEEecCCccHHHHHHHHHcCCCC--eEEEEccch
Confidence 99999999988888887777766 799999974
No 84
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.94 E-value=2.5e-26 Score=211.60 Aligned_cols=271 Identities=17% Similarity=0.239 Sum_probs=187.4
Q ss_pred cHHHHHHHHHHhcC-CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcCCC
Q 013858 145 TSIQAQAMPVALSG-RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDS 223 (435)
Q Consensus 145 ~~~Q~~~i~~~~~~-~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~~~ 223 (435)
++.|++++..+.++ +||.+++|||+||+++|++|.|.. +...||+.|..+|...+.+.+..+-
T Consensus 22 s~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~-----------~gITIV~SPLiALIkDQiDHL~~LK----- 85 (641)
T KOG0352|consen 22 SRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH-----------GGITIVISPLIALIKDQIDHLKRLK----- 85 (641)
T ss_pred ChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh-----------CCeEEEehHHHHHHHHHHHHHHhcC-----
Confidence 78999999999876 589999999999999999999876 4578999999999888877777763
Q ss_pred ceEEEEECCCCHHHHHHH------HhCCCcEEEECcHHHHHHH----HcCCCCCCCceEEEEecCCcccCCC--CHHHHH
Q 013858 224 FKTAIVVGGTNIAEQRSE------LRGGVSIVVATPGRFLDHL----QQGNTSLSRVSFVILDEADRMLDMG--FEPQIR 291 (435)
Q Consensus 224 ~~~~~~~g~~~~~~~~~~------~~~~~~I~v~T~~~l~~~l----~~~~~~l~~~~~iIiDEah~~~~~~--~~~~i~ 291 (435)
+.+..+....+..+..+. .+....+++.||++....- .+...+-..++|+|+||||+..+|| |++.+.
T Consensus 86 Vp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL 165 (641)
T KOG0352|consen 86 VPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDYL 165 (641)
T ss_pred CchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcchh
Confidence 333333333332222211 2345689999998753221 1222334568999999999999987 777766
Q ss_pred HH---HHhCCCCCeEEEEcccccHHHHHHHHH--HcCCCeEEEeCCCCCCCCceEEEEEEc-ChhhHHHHHHHHHHHHHH
Q 013858 292 EV---MQNLPDKHQTLLFSATMPVEIEALAQE--YLTDPVQVKVGKVSSPTANVIQILEKV-SENEKVDRLLALLVEEAF 365 (435)
Q Consensus 292 ~i---~~~~~~~~q~i~~SATl~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~i~~~~~~~-~~~~k~~~l~~~l~~~~~ 365 (435)
.+ ...+ ++...|++|||..+.+++.+.. -+.+|+.+.-.+... .++....++. .-.+-+..|.++..+...
T Consensus 166 ~LG~LRS~~-~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR--~NLFYD~~~K~~I~D~~~~LaDF~~~~LG 242 (641)
T KOG0352|consen 166 TLGSLRSVC-PGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFR--DNLFYDNHMKSFITDCLTVLADFSSSNLG 242 (641)
T ss_pred hhhhHHhhC-CCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchh--hhhhHHHHHHHHhhhHhHhHHHHHHHhcC
Confidence 54 3333 4566899999999888775433 355777664332211 1111000000 112233344444333322
Q ss_pred hhhcc----CCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 366 LAEKS----CHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 366 ~~~~~----~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
++++. ..-.|=.||||.|+++|++++-.|...|++...||+|+...+|.++.+.|.+|+..|++||..+
T Consensus 243 ~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SF 315 (641)
T KOG0352|consen 243 KHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSF 315 (641)
T ss_pred ChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEecc
Confidence 22110 0112237999999999999999999999999999999999999999999999999999999864
No 85
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.94 E-value=5.4e-26 Score=212.50 Aligned_cols=284 Identities=17% Similarity=0.165 Sum_probs=213.1
Q ss_pred CCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEE
Q 013858 120 IESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALV 199 (435)
Q Consensus 120 ~~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~li 199 (435)
++.|...+.++.+.+.++++.-...+..+...+..+.+++.++++|+||||||+ ++|++....... ....+.+
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKtt--QiPq~~~~~~~~-----~~~~v~C 96 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTT--QIPQFVLEYELS-----HLTGVAC 96 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccc--cCcHHHHHHHHh-----hccceee
Confidence 677999999999999999998777777777777777788999999999999999 788776543321 1256899
Q ss_pred EccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCC
Q 013858 200 LAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEAD 279 (435)
Q Consensus 200 l~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah 279 (435)
++|+|..|++++.++..-+ ++..+.-+|.....+... ..++-+.+||+|+|+++.+... .+.+|++||+||||
T Consensus 97 TQprrvaamsva~RVadEM----Dv~lG~EVGysIrfEdC~--~~~T~Lky~tDgmLlrEams~p-~l~~y~viiLDeah 169 (699)
T KOG0925|consen 97 TQPRRVAAMSVAQRVADEM----DVTLGEEVGYSIRFEDCT--SPNTLLKYCTDGMLLREAMSDP-LLGRYGVIILDEAH 169 (699)
T ss_pred cCchHHHHHHHHHHHHHHh----ccccchhccccccccccC--ChhHHHHHhcchHHHHHHhhCc-ccccccEEEechhh
Confidence 9999999999988876654 466666666554433221 1224567999999999998844 68999999999999
Q ss_pred -cccCCCCHHHHHHHHHhCCCCCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHH
Q 013858 280 -RMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLA 358 (435)
Q Consensus 280 -~~~~~~~~~~i~~i~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 358 (435)
|.+..+.+..+.+-+..-++++++|+||||+. .. ..+.|+.++..+.+.. ...++.++..-.+.+.+...+.
T Consensus 170 ERtlATDiLmGllk~v~~~rpdLk~vvmSatl~--a~-Kfq~yf~n~Pll~vpg----~~PvEi~Yt~e~erDylEaair 242 (699)
T KOG0925|consen 170 ERTLATDILMGLLKEVVRNRPDLKLVVMSATLD--AE-KFQRYFGNAPLLAVPG----THPVEIFYTPEPERDYLEAAIR 242 (699)
T ss_pred hhhHHHHHHHHHHHHHHhhCCCceEEEeecccc--hH-HHHHHhCCCCeeecCC----CCceEEEecCCCChhHHHHHHH
Confidence 88887766666666555667999999999983 23 3455666655555433 3455666766777888888888
Q ss_pred HHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhC---------CCcEEEecCCCCHHHHHHHHHHHHc---C--C
Q 013858 359 LLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE---------GLHAVALHGGRNQSDRESALRDFRN---G--S 424 (435)
Q Consensus 359 ~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~v~~lh~~~~~~~R~~~~~~f~~---g--~ 424 (435)
.+.+++... .+|-+|||+++.++++..|+.+..+ .+.|.++| +.++.++++.... | .
T Consensus 243 tV~qih~~e-----e~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~ 313 (699)
T KOG0925|consen 243 TVLQIHMCE-----EPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYG 313 (699)
T ss_pred HHHHHHhcc-----CCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCcc
Confidence 777776554 4556999999999999999999754 25788999 5566666665532 2 5
Q ss_pred CcEEEEcCC
Q 013858 425 TNILVFSYK 433 (435)
Q Consensus 425 ~~VLVaT~~ 433 (435)
.+|+|+|++
T Consensus 314 RkvVvstni 322 (699)
T KOG0925|consen 314 RKVVVSTNI 322 (699)
T ss_pred ceEEEEecc
Confidence 689999986
No 86
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.94 E-value=1.5e-25 Score=233.07 Aligned_cols=273 Identities=21% Similarity=0.298 Sum_probs=204.2
Q ss_pred HHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHH
Q 013858 133 MKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEK 212 (435)
Q Consensus 133 ~~~l~~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~ 212 (435)
......+|....++-|.++|..++.|+++++.+|||.||+++|++|++.. ++..|||.|..+|+..+
T Consensus 254 ~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~-----------~gitvVISPL~SLm~DQ-- 320 (941)
T KOG0351|consen 254 LLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL-----------GGVTVVISPLISLMQDQ-- 320 (941)
T ss_pred HHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc-----------CCceEEeccHHHHHHHH--
Confidence 33446679999999999999999999999999999999999999999876 56899999999996655
Q ss_pred HHHHHhhcCCCceEEEEECCCCHHHHHHH---HhC---CCcEEEECcHHHHHHHH--cCCCCCCC---ceEEEEecCCcc
Q 013858 213 EVKALSRSLDSFKTAIVVGGTNIAEQRSE---LRG---GVSIVVATPGRFLDHLQ--QGNTSLSR---VSFVILDEADRM 281 (435)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~---~~~I~v~T~~~l~~~l~--~~~~~l~~---~~~iIiDEah~~ 281 (435)
+..+... ++....+.++....++... +.. ..+|++.||+++...-. .....+.. +.++||||||+.
T Consensus 321 -v~~L~~~--~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCV 397 (941)
T KOG0351|consen 321 -VTHLSKK--GIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCV 397 (941)
T ss_pred -HHhhhhc--CcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHh
Confidence 5555332 6888888888877644332 332 47999999999854321 11233444 899999999999
Q ss_pred cCCC--CHHHHHHH---HHhCCCCCeEEEEcccccHHHHHHHHHHcC--CCeEEEeCCCCCCCCceEEEEEEcChhhHHH
Q 013858 282 LDMG--FEPQIREV---MQNLPDKHQTLLFSATMPVEIEALAQEYLT--DPVQVKVGKVSSPTANVIQILEKVSENEKVD 354 (435)
Q Consensus 282 ~~~~--~~~~i~~i---~~~~~~~~q~i~~SATl~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~ 354 (435)
.+|| |++.+.++ +...+ ...+|++|||....++..+-.-++ ++..+. ......+....+..-.......
T Consensus 398 SqWgHdFRp~Yk~l~~l~~~~~-~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~---~sfnR~NL~yeV~~k~~~~~~~ 473 (941)
T KOG0351|consen 398 SQWGHDFRPSYKRLGLLRIRFP-GVPFIALTATATERVREDVIRSLGLRNPELFK---SSFNRPNLKYEVSPKTDKDALL 473 (941)
T ss_pred hhhcccccHHHHHHHHHHhhCC-CCCeEEeehhccHHHHHHHHHHhCCCCcceec---ccCCCCCceEEEEeccCccchH
Confidence 9987 87766654 33333 367999999998888777666554 444222 1222333333333333233333
Q ss_pred HHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCC
Q 013858 355 RLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYK 433 (435)
Q Consensus 355 ~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~ 433 (435)
.+...+... .+...+||||.++.+|++++..|+..|+.+..||+||+..+|..|.+.|..++.+|+|||=+
T Consensus 474 ~~~~~~~~~--------~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVA 544 (941)
T KOG0351|consen 474 DILEESKLR--------HPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVA 544 (941)
T ss_pred HHHHHhhhc--------CCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEee
Confidence 333333322 56677999999999999999999999999999999999999999999999999999999954
No 87
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.93 E-value=5.2e-24 Score=209.65 Aligned_cols=275 Identities=21% Similarity=0.294 Sum_probs=201.3
Q ss_pred CCHHHHHH-HHHCCCCCCcHHHHHHHHHHhcC------CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEE
Q 013858 128 LHPSIMKD-IEFHEYTRPTSIQAQAMPVALSG------RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 200 (435)
Q Consensus 128 l~~~l~~~-l~~~~~~~p~~~Q~~~i~~~~~~------~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil 200 (435)
....+++. +....| .+|..|++++..|... -+=+++|.-|||||.++++.++..+.. |.++...
T Consensus 247 ~~~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~--------G~Q~ALM 317 (677)
T COG1200 247 ANGELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA--------GYQAALM 317 (677)
T ss_pred ccHHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc--------CCeeEEe
Confidence 34444444 455555 6899999999999853 257999999999999998888877655 7899999
Q ss_pred ccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHH---HHHh-CCCcEEEECcHHHHHHHHcCCCCCCCceEEEEe
Q 013858 201 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQR---SELR-GGVSIVVATPGRFLDHLQQGNTSLSRVSFVILD 276 (435)
Q Consensus 201 ~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~-~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiD 276 (435)
+||-.||.|.++.+.++...+ ++++..++|........ ..+. +..+|+|+| +.+.+....+.++.++|+|
T Consensus 318 APTEILA~QH~~~~~~~l~~~-~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGT-----HALiQd~V~F~~LgLVIiD 391 (677)
T COG1200 318 APTEILAEQHYESLRKWLEPL-GIRVALLTGSLKGKARKEILEQLASGEIDIVVGT-----HALIQDKVEFHNLGLVIID 391 (677)
T ss_pred ccHHHHHHHHHHHHHHHhhhc-CCeEEEeecccchhHHHHHHHHHhCCCCCEEEEc-----chhhhcceeecceeEEEEe
Confidence 999999999999999999887 69999999987655433 3333 448999999 4566778889999999999
Q ss_pred cCCcccCCCCHHHHHHHHHhCCC-CCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHH
Q 013858 277 EADRMLDMGFEPQIREVMQNLPD-KHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDR 355 (435)
Q Consensus 277 Eah~~~~~~~~~~i~~i~~~~~~-~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~ 355 (435)
|-|| |+-.-+..+..... ..-+++||||+-+..-. -..+++--.-.+...+....+|..... ..++...
T Consensus 392 EQHR-----FGV~QR~~L~~KG~~~Ph~LvMTATPIPRTLA--lt~fgDldvS~IdElP~GRkpI~T~~i---~~~~~~~ 461 (677)
T COG1200 392 EQHR-----FGVHQRLALREKGEQNPHVLVMTATPIPRTLA--LTAFGDLDVSIIDELPPGRKPITTVVI---PHERRPE 461 (677)
T ss_pred cccc-----ccHHHHHHHHHhCCCCCcEEEEeCCCchHHHH--HHHhccccchhhccCCCCCCceEEEEe---ccccHHH
Confidence 9999 45555555555544 45589999998554433 233333222122222222233333333 3355667
Q ss_pred HHHHHHHHHHhhhccCCCCCcEEEEeCchHH--------HHHHHHHHHhC--CCcEEEecCCCCHHHHHHHHHHHHcCCC
Q 013858 356 LLALLVEEAFLAEKSCHPFPLTIVFVERKTR--------CDEVSEALVAE--GLHAVALHGGRNQSDRESALRDFRNGST 425 (435)
Q Consensus 356 l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~--------~~~l~~~L~~~--~~~v~~lh~~~~~~~R~~~~~~f~~g~~ 425 (435)
+++.+.+.+.++ .++-|.|+-.++ ++.+++.|+.. ++++..+||.|...++++++++|++|+.
T Consensus 462 v~e~i~~ei~~G-------rQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~ 534 (677)
T COG1200 462 VYERIREEIAKG-------RQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEI 534 (677)
T ss_pred HHHHHHHHHHcC-------CEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCC
Confidence 777777766544 459999987654 55667777744 5779999999999999999999999999
Q ss_pred cEEEEcCCC
Q 013858 426 NILVFSYKL 434 (435)
Q Consensus 426 ~VLVaT~~L 434 (435)
+|||||.++
T Consensus 535 ~ILVaTTVI 543 (677)
T COG1200 535 DILVATTVI 543 (677)
T ss_pred cEEEEeeEE
Confidence 999999763
No 88
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.93 E-value=1.5e-23 Score=217.19 Aligned_cols=262 Identities=21% Similarity=0.233 Sum_probs=180.6
Q ss_pred CCCcHHHHHHHHHHhcC---CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHh
Q 013858 142 TRPTSIQAQAMPVALSG---RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (435)
Q Consensus 142 ~~p~~~Q~~~i~~~~~~---~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~ 218 (435)
..+++.|+++++.+..+ +++++.|+||||||.+|+.++...+.. |.++||++|+++|+.|+.+++++..
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~--------g~~vLvLvPt~~L~~Q~~~~l~~~f 214 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ--------GKQALVLVPEIALTPQMLARFRARF 214 (679)
T ss_pred CCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc--------CCeEEEEeCcHHHHHHHHHHHHHHh
Confidence 35899999999999874 689999999999999997766555433 5789999999999999999997754
Q ss_pred hcCCCceEEEEECCCCHHHHHHH----HhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCC-----CH-H
Q 013858 219 RSLDSFKTAIVVGGTNIAEQRSE----LRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG-----FE-P 288 (435)
Q Consensus 219 ~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~-----~~-~ 288 (435)
+..+..++|+....+.... ..+..+|+|+|++.+. ..+.++++|||||+|...... +. .
T Consensus 215 ----g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r 283 (679)
T PRK05580 215 ----GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHAR 283 (679)
T ss_pred ----CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcHH
Confidence 4678888988776544322 2355799999998763 357889999999999654321 11 1
Q ss_pred HHHHHHHhCCCCCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCC--CCCCceEEEEEEcChhh-------HHHHHHHH
Q 013858 289 QIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVS--SPTANVIQILEKVSENE-------KVDRLLAL 359 (435)
Q Consensus 289 ~i~~i~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~i~~~~~~~~~~~-------k~~~l~~~ 359 (435)
.+. ++.....+.++|++|||++.+....+.. +....+...... ...+.+ .+....... -...+++.
T Consensus 284 ~va-~~ra~~~~~~~il~SATps~~s~~~~~~--g~~~~~~l~~r~~~~~~p~v--~~id~~~~~~~~~~~~ls~~l~~~ 358 (679)
T PRK05580 284 DLA-VVRAKLENIPVVLGSATPSLESLANAQQ--GRYRLLRLTKRAGGARLPEV--EIIDMRELLRGENGSFLSPPLLEA 358 (679)
T ss_pred HHH-HHHhhccCCCEEEEcCCCCHHHHHHHhc--cceeEEEeccccccCCCCeE--EEEechhhhhhcccCCCCHHHHHH
Confidence 222 2333346789999999987555443322 223333333221 111222 112221110 11345555
Q ss_pred HHHHHHhhhccCCCCCcEEEEeCch-------------------------------------------------------
Q 013858 360 LVEEAFLAEKSCHPFPLTIVFVERK------------------------------------------------------- 384 (435)
Q Consensus 360 l~~~~~~~~~~~~~~~~~lVF~~~~------------------------------------------------------- 384 (435)
+.+.... +.++|||+|++
T Consensus 359 i~~~l~~-------g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~ 431 (679)
T PRK05580 359 IKQRLER-------GEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTD 431 (679)
T ss_pred HHHHHHc-------CCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCe
Confidence 6555433 33588888752
Q ss_pred -----HHHHHHHHHHHhC--CCcEEEecCCCC--HHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 385 -----TRCDEVSEALVAE--GLHAVALHGGRN--QSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 385 -----~~~~~l~~~L~~~--~~~v~~lh~~~~--~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
..++++++.|++. +.++..+|+++. +.+++.+++.|++|+.+|||+|+++
T Consensus 432 l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i 490 (679)
T PRK05580 432 LVPVGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQML 490 (679)
T ss_pred eEEeeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhh
Confidence 2567888888876 789999999997 4679999999999999999999976
No 89
>PRK09694 helicase Cas3; Provisional
Probab=99.93 E-value=7.6e-24 Score=221.12 Aligned_cols=280 Identities=20% Similarity=0.194 Sum_probs=173.8
Q ss_pred CCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhc
Q 013858 141 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRS 220 (435)
Q Consensus 141 ~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~ 220 (435)
...|+|+|..+......+..+|+.+|||+|||.+++..+. .+... +...+++|..||++++++++++++++...
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~-~l~~~-----~~~~gi~~aLPT~Atan~m~~Rl~~~~~~ 357 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAW-RLIDQ-----GLADSIIFALPTQATANAMLSRLEALASK 357 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHH-HHHHh-----CCCCeEEEECcHHHHHHHHHHHHHHHHHH
Confidence 4589999998865444456799999999999999755544 33332 12467999999999999999999875432
Q ss_pred -CCCceEEEEECCCCHHHHH---------------------HHHh---C---CCcEEEECcHHHHHHHHcC-CCCCCCc-
Q 013858 221 -LDSFKTAIVVGGTNIAEQR---------------------SELR---G---GVSIVVATPGRFLDHLQQG-NTSLSRV- 270 (435)
Q Consensus 221 -~~~~~~~~~~g~~~~~~~~---------------------~~~~---~---~~~I~v~T~~~l~~~l~~~-~~~l~~~- 270 (435)
+....+.+.+|........ ..+. + -..|+|+|...++...... ...++.+
T Consensus 358 ~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~ 437 (878)
T PRK09694 358 LFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFG 437 (878)
T ss_pred hcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHh
Confidence 2234566776654321100 0011 1 1589999999887554432 2223333
Q ss_pred ---eEEEEecCCcccCCCCHHHHHHHHHhCC-CCCeEEEEcccccHHHHHHHH-HHcCC---------CeEEEeCCC---
Q 013858 271 ---SFVILDEADRMLDMGFEPQIREVMQNLP-DKHQTLLFSATMPVEIEALAQ-EYLTD---------PVQVKVGKV--- 333 (435)
Q Consensus 271 ---~~iIiDEah~~~~~~~~~~i~~i~~~~~-~~~q~i~~SATl~~~~~~~~~-~~~~~---------~~~i~~~~~--- 333 (435)
++|||||+|.. +..+...+..++..+. ....+|+||||+|...+..+. .|-.. |........
T Consensus 438 La~svvIiDEVHAy-D~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~ 516 (878)
T PRK09694 438 LGRSVLIVDEVHAY-DAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQ 516 (878)
T ss_pred hccCeEEEechhhC-CHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccce
Confidence 58999999954 4334444455554432 356799999999988765443 33211 100000000
Q ss_pred -----CCC---CCceEEEEEEc--ChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCC---Cc
Q 013858 334 -----SSP---TANVIQILEKV--SENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEG---LH 400 (435)
Q Consensus 334 -----~~~---~~~i~~~~~~~--~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~---~~ 400 (435)
... .......+... ........+++.+.+.. ..++++|||||+++.|+.+++.|++.+ .+
T Consensus 517 ~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~-------~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~ 589 (878)
T PRK09694 517 RFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAA-------NAGAQVCLICNLVDDAQKLYQRLKELNNTQVD 589 (878)
T ss_pred eeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHH-------hcCCEEEEEECCHHHHHHHHHHHHhhCCCCce
Confidence 000 00011111111 11111123444443332 233469999999999999999999764 68
Q ss_pred EEEecCCCCHHHH----HHHHHHH-HcCC---CcEEEEcCCC
Q 013858 401 AVALHGGRNQSDR----ESALRDF-RNGS---TNILVFSYKL 434 (435)
Q Consensus 401 v~~lh~~~~~~~R----~~~~~~f-~~g~---~~VLVaT~~L 434 (435)
+..+||.+++.+| +++++.| ++|+ .+|||||+++
T Consensus 590 v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQVi 631 (878)
T PRK09694 590 IDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVV 631 (878)
T ss_pred EEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcch
Confidence 9999999999999 4567788 6676 4799999875
No 90
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=8e-24 Score=216.76 Aligned_cols=268 Identities=19% Similarity=0.215 Sum_probs=190.6
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcC
Q 013858 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (435)
Q Consensus 142 ~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~ 221 (435)
.+|+++|..+--.+..|+ |..++||+|||++|.+|++...+. |..++|++||+.||.|.++.+..+...+
T Consensus 81 ~~~ydvQliGg~~Lh~G~--Iaem~TGeGKTL~a~Lpa~~~al~--------G~~V~VvTpn~yLA~qd~e~m~~l~~~l 150 (896)
T PRK13104 81 LRHFDVQLIGGMVLHEGN--IAEMRTGEGKTLVATLPAYLNAIS--------GRGVHIVTVNDYLAKRDSQWMKPIYEFL 150 (896)
T ss_pred CCcchHHHhhhhhhccCc--cccccCCCCchHHHHHHHHHHHhc--------CCCEEEEcCCHHHHHHHHHHHHHHhccc
Confidence 577888888877776666 899999999999999999987654 4569999999999999999999999887
Q ss_pred CCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHH-HHHHHcC-CCCC-----CCceEEEEecCCccc-CC--------C
Q 013858 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQG-NTSL-----SRVSFVILDEADRML-DM--------G 285 (435)
Q Consensus 222 ~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l-~~~l~~~-~~~l-----~~~~~iIiDEah~~~-~~--------~ 285 (435)
++.+.+++||.........+ .++|+|+||++| .+++..+ .+.+ +.+.++||||||+++ |. |
T Consensus 151 -GLtv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIISg 227 (896)
T PRK13104 151 -GLTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIISG 227 (896)
T ss_pred -CceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceeeeC
Confidence 79999999998877665544 589999999999 8888764 2333 589999999999653 30 0
Q ss_pred -------CHHHHHHHHHhCCC--------------CCeEEEEccc-----------------------------------
Q 013858 286 -------FEPQIREVMQNLPD--------------KHQTLLFSAT----------------------------------- 309 (435)
Q Consensus 286 -------~~~~i~~i~~~~~~--------------~~q~i~~SAT----------------------------------- 309 (435)
....+..+...+.. +.+.+.+|-.
T Consensus 228 ~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~~ 307 (896)
T PRK13104 228 AAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVNA 307 (896)
T ss_pred CCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHHH
Confidence 11111222222211 1222333322
Q ss_pred --------------------------------------------------------------------------------
Q 013858 310 -------------------------------------------------------------------------------- 309 (435)
Q Consensus 310 -------------------------------------------------------------------------------- 309 (435)
T Consensus 308 aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTG 387 (896)
T PRK13104 308 ALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTG 387 (896)
T ss_pred HHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCCC
Confidence
Q ss_pred -ccHHHHHHHHHHcCCCeEEEeCCCCCCCCce-EEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHH
Q 013858 310 -MPVEIEALAQEYLTDPVQVKVGKVSSPTANV-IQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRC 387 (435)
Q Consensus 310 -l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i-~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~ 387 (435)
...+..++.+-|-. .+..-+...+.... .....+.....|..++++.+.+.+ ..+.|+||||++++.+
T Consensus 388 Ta~te~~Ef~~iY~l---~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~-------~~g~PVLVgt~Sie~s 457 (896)
T PRK13104 388 TADTEAYEFQQIYNL---EVVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECG-------VRKQPVLVGTVSIEAS 457 (896)
T ss_pred CChhHHHHHHHHhCC---CEEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHH-------hCCCCEEEEeCcHHHH
Confidence 11111111111100 01111111111111 122455567889999888887765 3455799999999999
Q ss_pred HHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 388 DEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 388 ~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
+.+++.|.+.|+++..+|+++.+.+|+.+.+.|+.| .|+||||+.
T Consensus 458 E~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G--~VtIATNmA 502 (896)
T PRK13104 458 EFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPG--AVTIATNMA 502 (896)
T ss_pred HHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCC--cEEEeccCc
Confidence 999999999999999999999999999999999999 499999973
No 91
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.92 E-value=1.9e-23 Score=208.99 Aligned_cols=266 Identities=21% Similarity=0.221 Sum_probs=197.8
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcC
Q 013858 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (435)
Q Consensus 142 ~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~ 221 (435)
.+|..+|++||-++..|..|++.|+|.+|||+++-.++...-.+ +-+.+|+.|-++|.+|-++.|+.-..
T Consensus 296 FelD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~h--------~TR~iYTSPIKALSNQKfRDFk~tF~-- 365 (1248)
T KOG0947|consen 296 FELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQKH--------MTRTIYTSPIKALSNQKFRDFKETFG-- 365 (1248)
T ss_pred CCccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHhh--------ccceEecchhhhhccchHHHHHHhcc--
Confidence 46899999999999999999999999999999876665444333 57899999999999999888866543
Q ss_pred CCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCCCHHHHHHHHHhCCCCC
Q 013858 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKH 301 (435)
Q Consensus 222 ~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~ 301 (435)
++. +++|+. .++..+.++|||.+.|..++.++.-..+++.+||+||+|.+-+...+..|..++-++|...
T Consensus 366 -Dvg--LlTGDv-------qinPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV 435 (1248)
T KOG0947|consen 366 -DVG--LLTGDV-------QINPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHV 435 (1248)
T ss_pred -ccc--eeecce-------eeCCCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeeccccc
Confidence 333 788877 3556689999999999999999877789999999999999999889999999999999999
Q ss_pred eEEEEcccccHHHHHHHHHHcC-CCeEEEeCCCCCCCCceEEEEEEcChh------------------------------
Q 013858 302 QTLLFSATMPVEIEALAQEYLT-DPVQVKVGKVSSPTANVIQILEKVSEN------------------------------ 350 (435)
Q Consensus 302 q~i~~SATl~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~i~~~~~~~~~~------------------------------ 350 (435)
++|++|||.|...+ ++.+..+ +...|.+......+...++++.+....
T Consensus 436 ~~IlLSATVPN~~E-FA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~ 514 (1248)
T KOG0947|consen 436 NFILLSATVPNTLE-FADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVD 514 (1248)
T ss_pred eEEEEeccCCChHH-HHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhcccccccc
Confidence 99999999987765 4444321 111222222212222222222211000
Q ss_pred ---------------------------------hHH--HHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHH
Q 013858 351 ---------------------------------EKV--DRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALV 395 (435)
Q Consensus 351 ---------------------------------~k~--~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~ 395 (435)
.+. ......+..... ..--|++|||-+++.|+..++.|.
T Consensus 515 ~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k------~~lLP~VvFvFSkkrCde~a~~L~ 588 (1248)
T KOG0947|consen 515 VEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRK------KNLLPVVVFVFSKKRCDEYADYLT 588 (1248)
T ss_pred cccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhh------cccCceEEEEEccccHHHHHHHHh
Confidence 000 011222211111 112359999999999999999996
Q ss_pred hCC---------------------------------------CcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 396 AEG---------------------------------------LHAVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 396 ~~~---------------------------------------~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
... .+++++|||+-+--++-+...|..|-++||+||.++
T Consensus 589 ~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETF 666 (1248)
T KOG0947|consen 589 NLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETF 666 (1248)
T ss_pred ccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhh
Confidence 521 348899999999999999999999999999999876
No 92
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.92 E-value=3.4e-24 Score=194.90 Aligned_cols=285 Identities=16% Similarity=0.272 Sum_probs=210.0
Q ss_pred ccCCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcc
Q 013858 124 TDMCLHPSIMKDIEF-HEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAP 202 (435)
Q Consensus 124 ~~~~l~~~l~~~l~~-~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P 202 (435)
++++++....+.|+. +.....+|.|..+|++.+.|.++++..|||.||+++|++|++.. .+.+|+++|
T Consensus 74 d~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a-----------dg~alvi~p 142 (695)
T KOG0353|consen 74 DDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA-----------DGFALVICP 142 (695)
T ss_pred CCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc-----------CCceEeech
Confidence 556778887777754 46778899999999999999999999999999999999999876 567999999
Q ss_pred ChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHH---H---hCCCcEEEECcHHHHHH--HHc---CCCCCCCce
Q 013858 203 TRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSE---L---RGGVSIVVATPGRFLDH--LQQ---GNTSLSRVS 271 (435)
Q Consensus 203 ~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~---~~~~~I~v~T~~~l~~~--l~~---~~~~l~~~~ 271 (435)
...|+....-+++.++ +....+...++..+.... . .....+++.||+.+..- ++. ..+....+.
T Consensus 143 lislmedqil~lkqlg-----i~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~ 217 (695)
T KOG0353|consen 143 LISLMEDQILQLKQLG-----IDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFK 217 (695)
T ss_pred hHHHHHHHHHHHHHhC-----cchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeE
Confidence 9999988888888875 455555566655543221 1 23457999999988432 221 134567899
Q ss_pred EEEEecCCcccCCC--CHHHHH--HHHHhCCCCCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEEE-
Q 013858 272 FVILDEADRMLDMG--FEPQIR--EVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEK- 346 (435)
Q Consensus 272 ~iIiDEah~~~~~~--~~~~i~--~i~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~- 346 (435)
+|-|||+|+-.+|| |++.+. .++.+.-+...+|+++||....+.+.++..+.-...+.+.. ....++....+..
T Consensus 218 ~iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a-~fnr~nl~yev~qk 296 (695)
T KOG0353|consen 218 LIAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRA-GFNRPNLKYEVRQK 296 (695)
T ss_pred EEeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeec-ccCCCCceeEeeeC
Confidence 99999999988887 666543 45666666778999999998888777777654222111111 1112233322222
Q ss_pred -cChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCC
Q 013858 347 -VSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGST 425 (435)
Q Consensus 347 -~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~ 425 (435)
.+.++-...+.+.+... -.+...||||-+++.|++++..|+..|+....||+.|.+++|.-+-+.|-.|++
T Consensus 297 p~n~dd~~edi~k~i~~~--------f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~ei 368 (695)
T KOG0353|consen 297 PGNEDDCIEDIAKLIKGD--------FAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEI 368 (695)
T ss_pred CCChHHHHHHHHHHhccc--------cCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccce
Confidence 23344444444443221 234457999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCC
Q 013858 426 NILVFSYK 433 (435)
Q Consensus 426 ~VLVaT~~ 433 (435)
+|+|||-+
T Consensus 369 qvivatva 376 (695)
T KOG0353|consen 369 QVIVATVA 376 (695)
T ss_pred EEEEEEee
Confidence 99999954
No 93
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.92 E-value=9.1e-24 Score=214.77 Aligned_cols=258 Identities=17% Similarity=0.136 Sum_probs=167.1
Q ss_pred CCCcHHHHHHHHHHhc-C--CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHh
Q 013858 142 TRPTSIQAQAMPVALS-G--RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (435)
Q Consensus 142 ~~p~~~Q~~~i~~~~~-~--~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~ 218 (435)
..+++||++++.++.. | +..++++|||+|||++.+ .++..+ +..+|||||+.+|+.||.+++.++.
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai-~aa~~l----------~k~tLILvps~~Lv~QW~~ef~~~~ 322 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGV-TAACTV----------KKSCLVLCTSAVSVEQWKQQFKMWS 322 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHH-HHHHHh----------CCCEEEEeCcHHHHHHHHHHHHHhc
Confidence 4689999999999873 4 368999999999999864 333332 2459999999999999999999886
Q ss_pred hcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcC--------CCCCCCceEEEEecCCcccCCCCHHHH
Q 013858 219 RSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQG--------NTSLSRVSFVILDEADRMLDMGFEPQI 290 (435)
Q Consensus 219 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~--------~~~l~~~~~iIiDEah~~~~~~~~~~i 290 (435)
.. +...+..+.|+... .......|+|+|++++.....+. .+.-..+++||+||||++. ...+
T Consensus 323 ~l-~~~~I~~~tg~~k~-----~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lp----A~~f 392 (732)
T TIGR00603 323 TI-DDSQICRFTSDAKE-----RFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVP----AAMF 392 (732)
T ss_pred CC-CCceEEEEecCccc-----ccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEcccccc----HHHH
Confidence 32 23455555554321 11233689999999885332111 2223578999999999884 3456
Q ss_pred HHHHHhCCCCCeEEEEcccccHHHH--HHHHHHcCCCeEEEeCCC----CCCCCceEEEEEEc--Ch-------------
Q 013858 291 REVMQNLPDKHQTLLFSATMPVEIE--ALAQEYLTDPVQVKVGKV----SSPTANVIQILEKV--SE------------- 349 (435)
Q Consensus 291 ~~i~~~~~~~~q~i~~SATl~~~~~--~~~~~~~~~~~~i~~~~~----~~~~~~i~~~~~~~--~~------------- 349 (435)
..++..+...+ .+++|||+..... ..+..+++ |........ ..-..++.-..+++ ..
T Consensus 393 r~il~~l~a~~-RLGLTATP~ReD~~~~~L~~LiG-P~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~ 470 (732)
T TIGR00603 393 RRVLTIVQAHC-KLGLTATLVREDDKITDLNFLIG-PKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRK 470 (732)
T ss_pred HHHHHhcCcCc-EEEEeecCcccCCchhhhhhhcC-CeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchh
Confidence 66666665544 6999999953221 12222333 332222111 01111111111121 11
Q ss_pred --------hhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHH
Q 013858 350 --------NEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFR 421 (435)
Q Consensus 350 --------~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~ 421 (435)
..|+..+..++..+. ..+.++||||++...++.+++.|. +..+||++++.+|.++++.|+
T Consensus 471 k~~l~~~np~K~~~~~~Li~~he-------~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~il~~Fr 538 (732)
T TIGR00603 471 RMLLYVMNPNKFRACQFLIRFHE-------QRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQILQNFQ 538 (732)
T ss_pred hhHHhhhChHHHHHHHHHHHHHh-------hcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHHHHHHHH
Confidence 122222222222211 255679999999999999988772 567999999999999999999
Q ss_pred cC-CCcEEEEcCCC
Q 013858 422 NG-STNILVFSYKL 434 (435)
Q Consensus 422 ~g-~~~VLVaT~~L 434 (435)
.| ..++||+|+++
T Consensus 539 ~~~~i~vLv~SkVg 552 (732)
T TIGR00603 539 HNPKVNTIFLSKVG 552 (732)
T ss_pred hCCCccEEEEeccc
Confidence 75 78999999864
No 94
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.92 E-value=4.6e-24 Score=218.24 Aligned_cols=292 Identities=20% Similarity=0.269 Sum_probs=203.7
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCC-CEEEEccCCCchhHHhHHHHHHHHHhcCCCCCC---CCCeEEEEccC
Q 013858 128 LHPSIMKDIEFHEYTRPTSIQAQAMPVALSGR-DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG---DGPLALVLAPT 203 (435)
Q Consensus 128 l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~-~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~---~~~~~lil~P~ 203 (435)
+|.+-..+ ..|...+.++|.....+++.+. ++++|||||+|||-++++-+++.+......... ...+++|++|.
T Consensus 296 lP~Wnq~a--F~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPm 373 (1674)
T KOG0951|consen 296 LPKWNQPA--FFGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPM 373 (1674)
T ss_pred Ccchhhhh--cccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeH
Confidence 44444443 4556668999999999999876 799999999999999999999887654332211 23589999999
Q ss_pred hhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCC---CCCceEEEEecCCc
Q 013858 204 RELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTS---LSRVSFVILDEADR 280 (435)
Q Consensus 204 r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~---l~~~~~iIiDEah~ 280 (435)
.+|+..|...|.+....+ ++++..++|+.....+. -.++.|+|+||+.. +.+.++..+ .+-++++||||.|.
T Consensus 374 KaLvqE~VgsfSkRla~~-GI~V~ElTgD~~l~~~q---ieeTqVIV~TPEK~-DiITRk~gdraY~qlvrLlIIDEIHL 448 (1674)
T KOG0951|consen 374 KALVQEMVGSFSKRLAPL-GITVLELTGDSQLGKEQ---IEETQVIVTTPEKW-DIITRKSGDRAYEQLVRLLIIDEIHL 448 (1674)
T ss_pred HHHHHHHHHHHHhhcccc-CcEEEEecccccchhhh---hhcceeEEeccchh-hhhhcccCchhHHHHHHHHhhhhhhh
Confidence 999999999886666565 79999999987644321 13589999999988 334333222 33589999999995
Q ss_pred ccCCCCHHHHHHHHHhC-------CCCCeEEEEcccccHHHHHHHHHHcC-CCe-EEEeCCCCCCCCceEEEEEEcChh-
Q 013858 281 MLDMGFEPQIREVMQNL-------PDKHQTLLFSATMPVEIEALAQEYLT-DPV-QVKVGKVSSPTANVIQILEKVSEN- 350 (435)
Q Consensus 281 ~~~~~~~~~i~~i~~~~-------~~~~q~i~~SATl~~~~~~~~~~~~~-~~~-~i~~~~~~~~~~~i~~~~~~~~~~- 350 (435)
+-+ +.++.+..|..+. ...++++++|||+|+-.. . ..|+. ++. .+.++.... +..+.|.+.-+...
T Consensus 449 LhD-dRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~D-V-~~Fl~v~~~glf~fd~syR-pvPL~qq~Igi~ek~ 524 (1674)
T KOG0951|consen 449 LHD-DRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYED-V-ASFLRVDPEGLFYFDSSYR-PVPLKQQYIGITEKK 524 (1674)
T ss_pred ccc-ccchHHHHHHHHHHHHhhhcccCceeeeecccCCchhh-h-HHHhccCcccccccCcccC-cCCccceEeccccCC
Confidence 533 3566666555443 236889999999986442 2 33433 222 223333333 33455555444332
Q ss_pred --hHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHh--------------------------------
Q 013858 351 --EKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVA-------------------------------- 396 (435)
Q Consensus 351 --~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~-------------------------------- 396 (435)
.++...-+++.+....+ ...+++|||+.++++..+.|+.++.
T Consensus 525 ~~~~~qamNe~~yeKVm~~----agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~ 600 (1674)
T KOG0951|consen 525 PLKRFQAMNEACYEKVLEH----AGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNP 600 (1674)
T ss_pred chHHHHHHHHHHHHHHHHh----CCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccCh
Confidence 23333333332222221 2337899999999999999998873
Q ss_pred -----CCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 397 -----EGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 397 -----~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
..++++.+|+||+..+|..+.+.|.+|.++|||+|-.|
T Consensus 601 dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatl 643 (1674)
T KOG0951|consen 601 DLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATL 643 (1674)
T ss_pred hHHHHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhh
Confidence 13679999999999999999999999999999999776
No 95
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.92 E-value=7.9e-23 Score=209.32 Aligned_cols=269 Identities=20% Similarity=0.225 Sum_probs=195.1
Q ss_pred CCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhc
Q 013858 141 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRS 220 (435)
Q Consensus 141 ~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~ 220 (435)
-.+|++.|..+.-.+..|+ |..+.||+|||+++.+|++...+. |..+-|++||..||.|.++.+..+...
T Consensus 79 g~~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~--------G~~V~IvTpn~yLA~rd~e~~~~l~~~ 148 (830)
T PRK12904 79 GMRHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALT--------GKGVHVVTVNDYLAKRDAEWMGPLYEF 148 (830)
T ss_pred CCCCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHc--------CCCEEEEecCHHHHHHHHHHHHHHHhh
Confidence 3578999999988887776 999999999999999999754443 345789999999999999999999988
Q ss_pred CCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHH-HHHHHcCC------CCCCCceEEEEecCCccc-CCC-------
Q 013858 221 LDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQGN------TSLSRVSFVILDEADRML-DMG------- 285 (435)
Q Consensus 221 ~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l-~~~l~~~~------~~l~~~~~iIiDEah~~~-~~~------- 285 (435)
+ +++++++.|+....++...+. ++|+|+|++.| .+++.... ..++.+.++||||||+++ +..
T Consensus 149 L-Glsv~~i~~~~~~~er~~~y~--~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiS 225 (830)
T PRK12904 149 L-GLSVGVILSGMSPEERREAYA--ADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIIS 225 (830)
T ss_pred c-CCeEEEEcCCCCHHHHHHhcC--CCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceeeE
Confidence 7 799999999988887766653 89999999999 77876532 246789999999999643 300
Q ss_pred --------CHHHHHHHHHhCCC--------CC------------------------------------------------
Q 013858 286 --------FEPQIREVMQNLPD--------KH------------------------------------------------ 301 (435)
Q Consensus 286 --------~~~~i~~i~~~~~~--------~~------------------------------------------------ 301 (435)
....+..+...+.. +.
T Consensus 226 g~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~ 305 (830)
T PRK12904 226 GPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDV 305 (830)
T ss_pred CCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCC
Confidence 11112222222211 01
Q ss_pred -------------------------------------------------------------eEEEEcccccHHHHHHHHH
Q 013858 302 -------------------------------------------------------------QTLLFSATMPVEIEALAQE 320 (435)
Q Consensus 302 -------------------------------------------------------------q~i~~SATl~~~~~~~~~~ 320 (435)
++.+||.|...+..++.+-
T Consensus 306 dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~i 385 (830)
T PRK12904 306 DYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREI 385 (830)
T ss_pred cEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHH
Confidence 2344555554333333333
Q ss_pred HcCCCeEEEeCCCCCCCCceE-EEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCC
Q 013858 321 YLTDPVQVKVGKVSSPTANVI-QILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGL 399 (435)
Q Consensus 321 ~~~~~~~i~~~~~~~~~~~i~-~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~ 399 (435)
|--+-+. -+...+..... ....+....+|..++.+.+.+.+. .+.++||||++++.++.+++.|.+.|+
T Consensus 386 Y~l~vv~---IPtnkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~-------~grpVLIft~Si~~se~Ls~~L~~~gi 455 (830)
T PRK12904 386 YNLDVVV---IPTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHK-------KGQPVLVGTVSIEKSELLSKLLKKAGI 455 (830)
T ss_pred hCCCEEE---cCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHh-------cCCCEEEEeCcHHHHHHHHHHHHHCCC
Confidence 3221111 11122111111 224455778899999888876553 345699999999999999999999999
Q ss_pred cEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 400 HAVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 400 ~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
++..+||. +.+|+..+..|+.+...|+||||+.
T Consensus 456 ~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmA 488 (830)
T PRK12904 456 PHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMA 488 (830)
T ss_pred ceEeccCc--hHHHHHHHHHhcCCCceEEEecccc
Confidence 99999996 8899999999999999999999974
No 96
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.91 E-value=2.8e-23 Score=212.91 Aligned_cols=285 Identities=17% Similarity=0.164 Sum_probs=195.7
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHH
Q 013858 130 PSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQ 209 (435)
Q Consensus 130 ~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q 209 (435)
+...+.+..+.-...+..+++.+.++.+++.++|.|+||+|||+ ++|++..-.... ++....+++.+|+|..|..
T Consensus 160 ~~~~~~~~~R~~LPa~~~r~~Il~~i~~~qVvvIsGeTGcGKTT--QvpQfiLd~~~~---~~~~~~IicTQPRRIsAIs 234 (924)
T KOG0920|consen 160 ESYKEMLRFRESLPAYKMRDTILDAIEENQVVVISGETGCGKTT--QVPQFILDEAIE---SGAACNIICTQPRRISAIS 234 (924)
T ss_pred hHHHHHHHHHHhCccHHHHHHHHHHHHhCceEEEeCCCCCCchh--hhhHHHHHHHHh---cCCCCeEEecCCchHHHHH
Confidence 34444444444444567777888888889999999999999999 677654432211 1135679999999999999
Q ss_pred HHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCC-cccCCCCHH
Q 013858 210 IEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEAD-RMLDMGFEP 288 (435)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah-~~~~~~~~~ 288 (435)
+++++..-.....+-.++.-.+.... ....+.++|||.|.|++.+.. +..+..+..||+||+| |-.+.+|.-
T Consensus 235 vAeRVa~ER~~~~g~~VGYqvrl~~~------~s~~t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHER~i~~DflL 307 (924)
T KOG0920|consen 235 VAERVAKERGESLGEEVGYQVRLESK------RSRETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSINTDFLL 307 (924)
T ss_pred HHHHHHHHhccccCCeeeEEEeeecc------cCCceeEEEecHHHHHHHhcc-CcccccCceeeeeeEEEccCCcccHH
Confidence 99988554423223333332222211 223478999999999999977 6678999999999999 999999988
Q ss_pred HHHHHHHhCCCCCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCCCC---------------CceEEE----------
Q 013858 289 QIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPT---------------ANVIQI---------- 343 (435)
Q Consensus 289 ~i~~i~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~---------------~~i~~~---------- 343 (435)
.+.+.+-..++++|+|+||||+. .+.+-..|.+.|+....+...... ....+.
T Consensus 308 i~lk~lL~~~p~LkvILMSAT~d--ae~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~ 385 (924)
T KOG0920|consen 308 ILLKDLLPRNPDLKVILMSATLD--AELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRL 385 (924)
T ss_pred HHHHHHhhhCCCceEEEeeeecc--hHHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCcccc
Confidence 88888877889999999999995 343444444444443333221100 000000
Q ss_pred --EEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhC-------CCcEEEecCCCCHHHHH
Q 013858 344 --LEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE-------GLHAVALHGGRNQSDRE 414 (435)
Q Consensus 344 --~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~-------~~~v~~lh~~~~~~~R~ 414 (435)
......+-..+.+...+..+... ...|.+|||.++..++..+.+.|... .+-+.++|+.++.++++
T Consensus 386 ~~~~~~~~~id~~Li~~li~~I~~~-----~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~ 460 (924)
T KOG0920|consen 386 ARLKLWEPEIDYDLIEDLIEYIDER-----EFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQ 460 (924)
T ss_pred ccchhccccccHHHHHHHHHhcccC-----CCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHH
Confidence 00001112233333333333322 45678999999999999999999652 25688999999999999
Q ss_pred HHHHHHHcCCCcEEEEcCC
Q 013858 415 SALRDFRNGSTNILVFSYK 433 (435)
Q Consensus 415 ~~~~~f~~g~~~VLVaT~~ 433 (435)
.++...-.|..+|++|||+
T Consensus 461 ~VF~~pp~g~RKIIlaTNI 479 (924)
T KOG0920|consen 461 AVFKRPPKGTRKIILATNI 479 (924)
T ss_pred HhcCCCCCCcchhhhhhhh
Confidence 9999999999999999997
No 97
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.91 E-value=3e-23 Score=214.91 Aligned_cols=278 Identities=20% Similarity=0.238 Sum_probs=199.2
Q ss_pred HHCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHH
Q 013858 137 EFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 216 (435)
Q Consensus 137 ~~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~ 216 (435)
...+| .|.++|++++-.+..|.+|++|+|||+|||+++..++...+.. +.+++|++|.++|.+|.++.+..
T Consensus 114 ~~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~--------~qrviYTsPIKALsNQKyrdl~~ 184 (1041)
T COG4581 114 REYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD--------GQRVIYTSPIKALSNQKYRDLLA 184 (1041)
T ss_pred HhCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc--------CCceEeccchhhhhhhHHHHHHH
Confidence 34454 6799999999999999999999999999999886666555444 56799999999999999999855
Q ss_pred HhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCCCHHHHHHHHHh
Q 013858 217 LSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQN 296 (435)
Q Consensus 217 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~~~~~i~~i~~~ 296 (435)
..... .-.+++++|+.. ++.++.++|||.+.|.+++.++...+..+.+||+||+|.+.+...+..|+.++..
T Consensus 185 ~fgdv-~~~vGL~TGDv~-------IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~ 256 (1041)
T COG4581 185 KFGDV-ADMVGLMTGDVS-------INPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIIL 256 (1041)
T ss_pred Hhhhh-hhhccceeccee-------eCCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHh
Confidence 43221 224577777763 5567899999999999999998888999999999999999999999999999999
Q ss_pred CCCCCeEEEEcccccHHHHHHHHHHc---CCCeEEEeCCCCCCCCceEEEEEEc-------ChhhH-----HHHHHHHHH
Q 013858 297 LPDKHQTLLFSATMPVEIEALAQEYL---TDPVQVKVGKVSSPTANVIQILEKV-------SENEK-----VDRLLALLV 361 (435)
Q Consensus 297 ~~~~~q~i~~SATl~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~i~~~~~~~-------~~~~k-----~~~l~~~l~ 361 (435)
+|...++|++|||+|...+ +..++- ..|..+.... .. .....+++..- ....+ .......+.
T Consensus 257 lP~~v~~v~LSATv~N~~E-F~~Wi~~~~~~~~~vv~t~-~R-pvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~ 333 (1041)
T COG4581 257 LPDHVRFVFLSATVPNAEE-FAEWIQRVHSQPIHVVSTE-HR-PVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLS 333 (1041)
T ss_pred cCCCCcEEEEeCCCCCHHH-HHHHHHhccCCCeEEEeec-CC-CCCeEEEEecCCceeeeecccccchhhcchhhhhhhh
Confidence 9999999999999976543 554443 2333332221 11 12222222111 11111 000111111
Q ss_pred HH---HHh------------------------------hhccCCCCCcEEEEeCchHHHHHHHHHHHh------------
Q 013858 362 EE---AFL------------------------------AEKSCHPFPLTIVFVERKTRCDEVSEALVA------------ 396 (435)
Q Consensus 362 ~~---~~~------------------------------~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~------------ 396 (435)
.. ... ........-++|+|+-++..|+..+..+..
T Consensus 334 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~ 413 (1041)
T COG4581 334 CFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERA 413 (1041)
T ss_pred ccchhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHH
Confidence 00 000 000002234699999999999998887752
Q ss_pred ----------------CCC-------------cEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 397 ----------------EGL-------------HAVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 397 ----------------~~~-------------~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
.++ .++++|+||-+..|..+...|..|-++|++||.++
T Consensus 414 i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~ 480 (1041)
T COG4581 414 IREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETF 480 (1041)
T ss_pred HHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhh
Confidence 011 35689999999999999999999999999999875
No 98
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.90 E-value=1e-21 Score=201.13 Aligned_cols=148 Identities=20% Similarity=0.329 Sum_probs=128.2
Q ss_pred ccCCCCHHHHHHHH-----HCCCCCC---cHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCC
Q 013858 124 TDMCLHPSIMKDIE-----FHEYTRP---TSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGP 195 (435)
Q Consensus 124 ~~~~l~~~l~~~l~-----~~~~~~p---~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~ 195 (435)
+.+.+..++.+.+. .+|+..| +|+|.++++.+..++++|+.++||+|||++|++|++..++. +.
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~--------g~ 136 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT--------GK 136 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh--------cC
Confidence 44577888887776 6899998 99999999999999999999999999999999999987764 23
Q ss_pred eEEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHH-HHHHHcCCCCCC------
Q 013858 196 LALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQGNTSLS------ 268 (435)
Q Consensus 196 ~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l-~~~l~~~~~~l~------ 268 (435)
.++|++||++||.|.++.+..+.+.+ ++++.+++||.....+...+ +++|+|+||++| .+++..+.+.++
T Consensus 137 ~v~IVTpTrELA~Qdae~m~~L~k~l-GLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~vq 213 (970)
T PRK12899 137 PVHLVTVNDYLAQRDCEWVGSVLRWL-GLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNSIATRKEEQVG 213 (970)
T ss_pred CeEEEeCCHHHHHHHHHHHHHHHhhc-CCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCCCCcCHHHhhc
Confidence 48899999999999999999999887 69999999999988877555 489999999999 999887645554
Q ss_pred -CceEEEEecCCccc
Q 013858 269 -RVSFVILDEADRML 282 (435)
Q Consensus 269 -~~~~iIiDEah~~~ 282 (435)
.+.++||||||.|+
T Consensus 214 r~~~~~IIDEADsmL 228 (970)
T PRK12899 214 RGFYFAIIDEVDSIL 228 (970)
T ss_pred ccccEEEEechhhhh
Confidence 46899999999764
No 99
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.90 E-value=2.3e-22 Score=198.73 Aligned_cols=263 Identities=22% Similarity=0.231 Sum_probs=168.2
Q ss_pred CCCcHHHHHHHHHHhc----CCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHH
Q 013858 142 TRPTSIQAQAMPVALS----GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (435)
Q Consensus 142 ~~p~~~Q~~~i~~~~~----~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~ 217 (435)
..|+++|++++.++.+ ++..+++.|||+|||.+++. ++..+ +..+|||+|+++|+.||.+.+.++
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~-~~~~~----------~~~~Lvlv~~~~L~~Qw~~~~~~~ 103 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAE-AIAEL----------KRSTLVLVPTKELLDQWAEALKKF 103 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHH-HHHHh----------cCCEEEEECcHHHHHHHHHHHHHh
Confidence 4689999999999998 78899999999999987633 33332 234999999999999998777666
Q ss_pred hhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCCCHHHHHHHHHhC
Q 013858 218 SRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL 297 (435)
Q Consensus 218 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~ 297 (435)
... . .....+|+..... .. ..|.|+|.+.+.+......+...++++||+||||++.... ...+...+
T Consensus 104 ~~~--~-~~~g~~~~~~~~~-----~~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~----~~~~~~~~ 170 (442)
T COG1061 104 LLL--N-DEIGIYGGGEKEL-----EP-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPS----YRRILELL 170 (442)
T ss_pred cCC--c-cccceecCceecc-----CC-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHH----HHHHHHhh
Confidence 532 1 1233344432211 11 3699999999977521223444579999999999986543 33333344
Q ss_pred CCCCeEEEEcccccHHHHHH---HHHHcCCCeEEEeCCCC----CCCCceEEEEEEc--ChhhHHH--------------
Q 013858 298 PDKHQTLLFSATMPVEIEAL---AQEYLTDPVQVKVGKVS----SPTANVIQILEKV--SENEKVD-------------- 354 (435)
Q Consensus 298 ~~~~q~i~~SATl~~~~~~~---~~~~~~~~~~i~~~~~~----~~~~~i~~~~~~~--~~~~k~~-------------- 354 (435)
.....++++|||++...... ...+++ ++........ ....+.......+ .......
T Consensus 171 ~~~~~~LGLTATp~R~D~~~~~~l~~~~g-~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~ 249 (442)
T COG1061 171 SAAYPRLGLTATPEREDGGRIGDLFDLIG-PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRA 249 (442)
T ss_pred hcccceeeeccCceeecCCchhHHHHhcC-CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhh
Confidence 33333899999986443111 222222 3333322111 1111222211111 1000000
Q ss_pred ------------------HHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHH
Q 013858 355 ------------------RLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESA 416 (435)
Q Consensus 355 ------------------~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~ 416 (435)
.....+......+ ....+++|||.+..++..++..+...|. +..+.|..++.+|..+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~i 324 (442)
T COG1061 250 RGTLRAENEARRIAIASERKIAAVRGLLLKH----ARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAI 324 (442)
T ss_pred hhhhhHHHHHHHHhhccHHHHHHHHHHHHHh----cCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHH
Confidence 0001111111111 0245799999999999999999998888 9999999999999999
Q ss_pred HHHHHcCCCcEEEEcCCC
Q 013858 417 LRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 417 ~~~f~~g~~~VLVaT~~L 434 (435)
++.|+.|+.++||++.+|
T Consensus 325 l~~fr~g~~~~lv~~~vl 342 (442)
T COG1061 325 LERFRTGGIKVLVTVKVL 342 (442)
T ss_pred HHHHHcCCCCEEEEeeec
Confidence 999999999999998775
No 100
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.90 E-value=3.2e-21 Score=200.13 Aligned_cols=274 Identities=21% Similarity=0.246 Sum_probs=207.1
Q ss_pred CCHHHHHHHHH-CCCCCCcHHHHHHHHHHhc----CC--CEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEE
Q 013858 128 LHPSIMKDIEF-HEYTRPTSIQAQAMPVALS----GR--DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 200 (435)
Q Consensus 128 l~~~l~~~l~~-~~~~~p~~~Q~~~i~~~~~----~~--~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil 200 (435)
.+......+.. ++| ..|+=|..||..+.. ++ |=+|||.-|-|||.+++-++|..+.. |+++.++
T Consensus 579 ~d~~~q~~F~~~FPy-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~--------GKQVAvL 649 (1139)
T COG1197 579 PDTEWQEEFEASFPY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMD--------GKQVAVL 649 (1139)
T ss_pred CChHHHHHHHhcCCC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcC--------CCeEEEE
Confidence 34444444443 444 559999999999873 44 78999999999999998888888665 7999999
Q ss_pred ccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHH----hCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEe
Q 013858 201 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILD 276 (435)
Q Consensus 201 ~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiD 276 (435)
+||..||.|.++.|++-+.++ .+++..+..-....++...+ .+..+|+|+|- .+-+++..++++.++|||
T Consensus 650 VPTTlLA~QHy~tFkeRF~~f-PV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTH-----rLL~kdv~FkdLGLlIID 723 (1139)
T COG1197 650 VPTTLLAQQHYETFKERFAGF-PVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTH-----RLLSKDVKFKDLGLLIID 723 (1139)
T ss_pred cccHHhHHHHHHHHHHHhcCC-CeeEEEecccCCHHHHHHHHHHHhcCCccEEEech-----HhhCCCcEEecCCeEEEe
Confidence 999999999999998877777 48888888877777665444 35679999994 333568889999999999
Q ss_pred cCCcccCCCCHHHHHHHHHhCCCCCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHH
Q 013858 277 EADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRL 356 (435)
Q Consensus 277 Eah~~~~~~~~~~i~~i~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l 356 (435)
|-||. +-.-..-++.++.+.-++-||||+-+....+.-.-+++.-.|... +.....++.++...+..--..++
T Consensus 724 EEqRF-----GVk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TP--P~~R~pV~T~V~~~d~~~ireAI 796 (1139)
T COG1197 724 EEQRF-----GVKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATP--PEDRLPVKTFVSEYDDLLIREAI 796 (1139)
T ss_pred chhhc-----CccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCC--CCCCcceEEEEecCChHHHHHHH
Confidence 99984 555555666667777899999998665555555444443333222 22233444444444433333333
Q ss_pred HHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhC--CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 357 LALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE--GLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 357 ~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~--~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
...+ ..+|++-..+|.++.++.+++.|++. ...+++.||.|+..+-+.++..|.+|+.+|||||.++
T Consensus 797 ~REl-----------~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTII 865 (1139)
T COG1197 797 LREL-----------LRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTII 865 (1139)
T ss_pred HHHH-----------hcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeee
Confidence 3332 45677888889999999999999987 5689999999999999999999999999999999874
No 101
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.89 E-value=1.8e-21 Score=194.86 Aligned_cols=244 Identities=20% Similarity=0.236 Sum_probs=159.3
Q ss_pred EEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHH
Q 013858 162 LGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSE 241 (435)
Q Consensus 162 ii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 241 (435)
++.|+||||||.+|+. ++...... |.++||++|+++|+.|+.+++++.. +..+..++++....+....
T Consensus 1 LL~g~TGsGKT~v~l~-~i~~~l~~-------g~~vLvlvP~i~L~~Q~~~~l~~~f----~~~v~vlhs~~~~~er~~~ 68 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQ-AIEKVLAL-------GKSVLVLVPEIALTPQMIQRFKYRF----GSQVAVLHSGLSDSEKLQA 68 (505)
T ss_pred CccCCCCCCHHHHHHH-HHHHHHHc-------CCeEEEEeCcHHHHHHHHHHHHHHh----CCcEEEEECCCCHHHHHHH
Confidence 4789999999999854 44444442 5789999999999999999997754 3567778887765543222
Q ss_pred ---H-hCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCC-----CH-HHHHHHHHhCCCCCeEEEEccccc
Q 013858 242 ---L-RGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG-----FE-PQIREVMQNLPDKHQTLLFSATMP 311 (435)
Q Consensus 242 ---~-~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~-----~~-~~i~~i~~~~~~~~q~i~~SATl~ 311 (435)
+ .+..+|+|+|+..+. ..+.++++|||||+|.....+ +. ..+...+.. ..+.++|++|||++
T Consensus 69 ~~~~~~g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~-~~~~~vil~SATPs 140 (505)
T TIGR00595 69 WRKVKNGEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAK-KFNCPVVLGSATPS 140 (505)
T ss_pred HHHHHcCCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHH-hcCCCEEEEeCCCC
Confidence 2 345799999997663 347789999999999654321 11 123333333 35678999999986
Q ss_pred HHHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEEEcChhh----HHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHH-
Q 013858 312 VEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENE----KVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTR- 386 (435)
Q Consensus 312 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~----k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~- 386 (435)
.+....+. .+....+...............+....... -...+++.+.+... .++++|||+|++.-
T Consensus 141 les~~~~~--~g~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~-------~g~qvLvflnrrGya 211 (505)
T TIGR00595 141 LESYHNAK--QKAYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLA-------AGEQSILFLNRRGYS 211 (505)
T ss_pred HHHHHHHh--cCCeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHH-------cCCcEEEEEeCCcCC
Confidence 54433332 122222222211111111111222222211 12345566655553 33459999886532
Q ss_pred -----------------------------------------------------------HHHHHHHHHhC--CCcEEEec
Q 013858 387 -----------------------------------------------------------CDEVSEALVAE--GLHAVALH 405 (435)
Q Consensus 387 -----------------------------------------------------------~~~l~~~L~~~--~~~v~~lh 405 (435)
.+++.+.|++. +.++..+|
T Consensus 212 ~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d 291 (505)
T TIGR00595 212 KNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARID 291 (505)
T ss_pred CeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEe
Confidence 57888888876 78999999
Q ss_pred CCCCHHHH--HHHHHHHHcCCCcEEEEcCCC
Q 013858 406 GGRNQSDR--ESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 406 ~~~~~~~R--~~~~~~f~~g~~~VLVaT~~L 434 (435)
+++++.++ +.+++.|++|+.+|||+|+++
T Consensus 292 ~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i 322 (505)
T TIGR00595 292 SDTTSRKGAHEALLNQFANGKADILIGTQMI 322 (505)
T ss_pred cccccCccHHHHHHHHHhcCCCCEEEeCccc
Confidence 99987766 899999999999999999986
No 102
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.89 E-value=6.4e-23 Score=200.61 Aligned_cols=270 Identities=19% Similarity=0.220 Sum_probs=201.3
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcC
Q 013858 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (435)
Q Consensus 142 ~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~ 221 (435)
..+.|+|.++|-.+-++.+|++.|.|.+|||.++..++-..+.. +.++||+.|-++|.+|-++++..-.+
T Consensus 128 F~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~--------kQRVIYTSPIKALSNQKYREl~~EF~-- 197 (1041)
T KOG0948|consen 128 FTLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE--------KQRVIYTSPIKALSNQKYRELLEEFK-- 197 (1041)
T ss_pred cccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh--------cCeEEeeChhhhhcchhHHHHHHHhc--
Confidence 35789999999999999999999999999999887776666554 57899999999999999998855432
Q ss_pred CCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCCCHHHHHHHHHhCCCCC
Q 013858 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKH 301 (435)
Q Consensus 222 ~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~ 301 (435)
.+++.+|+.. ++..+..+|||.+.|..++.++..-++.+.|||+||+|.|-+...+-.|..-+-.+|++.
T Consensus 198 ---DVGLMTGDVT-------InP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~v 267 (1041)
T KOG0948|consen 198 ---DVGLMTGDVT-------INPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNV 267 (1041)
T ss_pred ---ccceeeccee-------eCCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEeccccc
Confidence 2456667653 445678999999999999999888899999999999999999888888888888899999
Q ss_pred eEEEEcccccHHHHHHHHHHc---CCCeEEEeCCCCCCCCceEEEEEE---------cC-----hhhHHHHHHHHHHHHH
Q 013858 302 QTLLFSATMPVEIEALAQEYL---TDPVQVKVGKVSSPTANVIQILEK---------VS-----ENEKVDRLLALLVEEA 364 (435)
Q Consensus 302 q~i~~SATl~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~i~~~~~~---------~~-----~~~k~~~l~~~l~~~~ 364 (435)
+.+.+|||+|...+ ++++.. ..|..+..... . +....++... +. .++.+......+.+..
T Consensus 268 r~VFLSATiPNA~q-FAeWI~~ihkQPcHVVYTdy-R-PTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~ 344 (1041)
T KOG0948|consen 268 RFVFLSATIPNARQ-FAEWICHIHKQPCHVVYTDY-R-PTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAG 344 (1041)
T ss_pred eEEEEeccCCCHHH-HHHHHHHHhcCCceEEeecC-C-CCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccC
Confidence 99999999986654 666543 34554433211 1 1111111111 11 2233344444443322
Q ss_pred Hhh---------hcc--------------------CCCCCcEEEEeCchHHHHHHHHHHHhCC-----------------
Q 013858 365 FLA---------EKS--------------------CHPFPLTIVFVERKTRCDEVSEALVAEG----------------- 398 (435)
Q Consensus 365 ~~~---------~~~--------------------~~~~~~~lVF~~~~~~~~~l~~~L~~~~----------------- 398 (435)
... +++ .....++|||+-++++|+.+|-.+.+..
T Consensus 345 ~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nA 424 (1041)
T KOG0948|consen 345 ESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNA 424 (1041)
T ss_pred CCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHH
Confidence 111 000 0123569999999999999998886521
Q ss_pred ----------------------CcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 399 ----------------------LHAVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 399 ----------------------~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
.+++++|||+-+--++-+.=.|++|-++||+||.++
T Consensus 425 i~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETF 482 (1041)
T KOG0948|consen 425 IDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETF 482 (1041)
T ss_pred HHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhh
Confidence 348899999999999999999999999999999765
No 103
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.88 E-value=6.6e-21 Score=194.90 Aligned_cols=268 Identities=20% Similarity=0.227 Sum_probs=186.8
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcC
Q 013858 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (435)
Q Consensus 142 ~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~ 221 (435)
-+|+++|..+--.+..|+ |..++||.|||++|.+|++...+. |..+.|++|++.||.+..+.+..+...+
T Consensus 81 m~~ydVQliGgl~L~~G~--IaEm~TGEGKTL~a~lp~~l~al~--------g~~VhIvT~ndyLA~RD~e~m~~l~~~l 150 (908)
T PRK13107 81 MRHFDVQLLGGMVLDSNR--IAEMRTGEGKTLTATLPAYLNALT--------GKGVHVITVNDYLARRDAENNRPLFEFL 150 (908)
T ss_pred CCcCchHHhcchHhcCCc--cccccCCCCchHHHHHHHHHHHhc--------CCCEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence 467888887777776665 899999999999999999887665 5569999999999999999999999887
Q ss_pred CCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHH-HHHHHcC-CCC-----CCCceEEEEecCCccc-CC--------C
Q 013858 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQG-NTS-----LSRVSFVILDEADRML-DM--------G 285 (435)
Q Consensus 222 ~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l-~~~l~~~-~~~-----l~~~~~iIiDEah~~~-~~--------~ 285 (435)
++.+.++.++.+..+....+ +++|+|+|++.| .+++..+ ... .+.+.+.||||||.++ +. |
T Consensus 151 -Glsv~~i~~~~~~~~r~~~Y--~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLIISg 227 (908)
T PRK13107 151 -GLTVGINVAGLGQQEKKAAY--NADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISG 227 (908)
T ss_pred -CCeEEEecCCCCHHHHHhcC--CCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCceeecC
Confidence 79999999998875443322 589999999999 7777654 222 3678999999999554 31 0
Q ss_pred -------CHHHHHHHHHhCC-------------------CCCeEE-----------------------------------
Q 013858 286 -------FEPQIREVMQNLP-------------------DKHQTL----------------------------------- 304 (435)
Q Consensus 286 -------~~~~i~~i~~~~~-------------------~~~q~i----------------------------------- 304 (435)
....+..+...+. ...+.+
T Consensus 228 ~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~~~ 307 (908)
T PRK13107 228 AAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISLL 307 (908)
T ss_pred CCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhHHH
Confidence 1111111111110 011122
Q ss_pred --------------------------------------------------------------------------------
Q 013858 305 -------------------------------------------------------------------------------- 304 (435)
Q Consensus 305 -------------------------------------------------------------------------------- 304 (435)
T Consensus 308 ~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL 387 (908)
T PRK13107 308 HHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEKL 387 (908)
T ss_pred HHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhHh
Confidence
Q ss_pred -EEcccccHHHHHHHHHHcCCCeEEEeCCCCCCCCceE-EEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeC
Q 013858 305 -LFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVI-QILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVE 382 (435)
Q Consensus 305 -~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~-~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~ 382 (435)
+||.|...+..++.+-|-.+-+. -+...+..... ....+....+|..++++.+.+.+.. +.++||||+
T Consensus 388 ~GMTGTa~te~~Ef~~iY~l~Vv~---IPTnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~-------GrpVLV~t~ 457 (908)
T PRK13107 388 AGMTGTADTEAFEFQHIYGLDTVV---VPTNRPMVRKDMADLVYLTADEKYQAIIKDIKDCRER-------GQPVLVGTV 457 (908)
T ss_pred hcccCCChHHHHHHHHHhCCCEEE---CCCCCCccceeCCCcEEeCHHHHHHHHHHHHHHHHHc-------CCCEEEEeC
Confidence 22222222222222222111111 11111111111 1234456788999999888776643 446999999
Q ss_pred chHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 383 RKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 383 ~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
+.+.++.+++.|...|+.+..+|+++.+.+|..+.+.|+.|. |+||||+.
T Consensus 458 sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmA 507 (908)
T PRK13107 458 SIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMA 507 (908)
T ss_pred cHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCc
Confidence 999999999999999999999999999999999999999998 99999973
No 104
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.88 E-value=6.9e-21 Score=168.83 Aligned_cols=188 Identities=44% Similarity=0.608 Sum_probs=152.2
Q ss_pred HCCCCCCcHHHHHHHHHHhcC-CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHH
Q 013858 138 FHEYTRPTSIQAQAMPVALSG-RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 216 (435)
Q Consensus 138 ~~~~~~p~~~Q~~~i~~~~~~-~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~ 216 (435)
..++..|+++|.+++..+..+ ++++++++||+|||+++..+++..+.... ...++|++|++.++.|+...+..
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~------~~~~l~~~p~~~~~~~~~~~~~~ 76 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK------GKRVLVLVPTRELAEQWAEELKK 76 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC------CCcEEEEeCCHHHHHHHHHHHHH
Confidence 346778999999999999998 99999999999999988777777655421 35799999999999999999988
Q ss_pred HhhcCCCceEEEEECCCCHHHHHHHHhCCC-cEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCCCHHHHHHHHH
Q 013858 217 LSRSLDSFKTAIVVGGTNIAEQRSELRGGV-SIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQ 295 (435)
Q Consensus 217 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~~~~~i~~i~~ 295 (435)
++... ........++............+. +|+++|++.+.+.+........+++++||||||.+....+...+..++.
T Consensus 77 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~ 155 (201)
T smart00487 77 LGPSL-GLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLK 155 (201)
T ss_pred HhccC-CeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHH
Confidence 87543 224455555555444444455555 9999999999999887666778899999999998876567888888988
Q ss_pred hCCCCCeEEEEcccccHHHHHHHHHHcCCCeEEEeCC
Q 013858 296 NLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGK 332 (435)
Q Consensus 296 ~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~ 332 (435)
.+++..+++++|||++.........++.+...+....
T Consensus 156 ~~~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~~ 192 (201)
T smart00487 156 LLPKNVQLLLLSATPPEEIENLLELFLNDPVFIDVGP 192 (201)
T ss_pred hCCccceEEEEecCCchhHHHHHHHhcCCCEEEeCCc
Confidence 8877889999999999999999999888777766554
No 105
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.87 E-value=1.1e-19 Score=163.97 Aligned_cols=256 Identities=18% Similarity=0.192 Sum_probs=177.8
Q ss_pred CCcHHHHHHHHHHh----cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHh
Q 013858 143 RPTSIQAQAMPVAL----SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (435)
Q Consensus 143 ~p~~~Q~~~i~~~~----~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~ 218 (435)
.+++.|+.+-..++ +..+.+++|-||+|||.. +.+.+...+.. |.++.+..|+...+..++.++++-.
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al~~-------G~~vciASPRvDVclEl~~Rlk~aF 168 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQALNQ-------GGRVCIASPRVDVCLELYPRLKQAF 168 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh-hHHHHHHHHhc-------CCeEEEecCcccchHHHHHHHHHhh
Confidence 57889988776655 567899999999999976 47778877764 6889999999999999999987755
Q ss_pred hcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCCCHHHHHHHHHhCC
Q 013858 219 RSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLP 298 (435)
Q Consensus 219 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~ 298 (435)
. +....+++|++...- ...++|+|.-.|+++.. .++++||||+|..--..-......+.....
T Consensus 169 ~---~~~I~~Lyg~S~~~f-------r~plvVaTtHQLlrFk~-------aFD~liIDEVDAFP~~~d~~L~~Av~~ark 231 (441)
T COG4098 169 S---NCDIDLLYGDSDSYF-------RAPLVVATTHQLLRFKQ-------AFDLLIIDEVDAFPFSDDQSLQYAVKKARK 231 (441)
T ss_pred c---cCCeeeEecCCchhc-------cccEEEEehHHHHHHHh-------hccEEEEeccccccccCCHHHHHHHHHhhc
Confidence 3 467888998875432 26899999988887754 368999999995432211112222222233
Q ss_pred CCCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHH-------HHHHHHHHHHHhhhccC
Q 013858 299 DKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVD-------RLLALLVEEAFLAEKSC 371 (435)
Q Consensus 299 ~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~-------~l~~~l~~~~~~~~~~~ 371 (435)
+.--+|.+|||+++.++..+.. ++...+.+.......+-....+.+.....|.- .+..-+.+..
T Consensus 232 ~~g~~IylTATp~k~l~r~~~~--g~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~------- 302 (441)
T COG4098 232 KEGATIYLTATPTKKLERKILK--GNLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQR------- 302 (441)
T ss_pred ccCceEEEecCChHHHHHHhhh--CCeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHH-------
Confidence 3445899999999877654432 23333333333333333334444544333222 3333333332
Q ss_pred CCCCcEEEEeCchHHHHHHHHHHHhC-C-CcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 372 HPFPLTIVFVERKTRCDEVSEALVAE-G-LHAVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 372 ~~~~~~lVF~~~~~~~~~l~~~L~~~-~-~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
..+.+++||+++....++++..|++. + ..++..|+... .|.+.+++|++|+.++||+|.+|
T Consensus 303 ~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d~--~R~EkV~~fR~G~~~lLiTTTIL 365 (441)
T COG4098 303 KTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSEDQ--HRKEKVEAFRDGKITLLITTTIL 365 (441)
T ss_pred hcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccCc--cHHHHHHHHHcCceEEEEEeehh
Confidence 34457999999999999999999554 3 35678888765 89999999999999999999987
No 106
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.86 E-value=5.6e-20 Score=197.59 Aligned_cols=271 Identities=18% Similarity=0.218 Sum_probs=166.2
Q ss_pred CCCcHHHHHHHHHHh----cC-CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHH
Q 013858 142 TRPTSIQAQAMPVAL----SG-RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 216 (435)
Q Consensus 142 ~~p~~~Q~~~i~~~~----~~-~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~ 216 (435)
..++++|.+|+..+. +| +.++++++||||||.++ +.++..+.... ..+++|+++|+++|+.|+.+.|+.
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~ta-i~li~~L~~~~-----~~~rVLfLvDR~~L~~Qa~~~F~~ 485 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTA-IALMYRLLKAK-----RFRRILFLVDRSALGEQAEDAFKD 485 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHH-HHHHHHHHhcC-----ccCeEEEEecHHHHHHHHHHHHHh
Confidence 458999999998876 33 57999999999999874 45555554432 246899999999999999999888
Q ss_pred HhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcC-----CCCCCCceEEEEecCCcccCC-------
Q 013858 217 LSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQG-----NTSLSRVSFVILDEADRMLDM------- 284 (435)
Q Consensus 217 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~-----~~~l~~~~~iIiDEah~~~~~------- 284 (435)
+.... ......+++.....+. ......+|+|+|.+.+.+.+... .+.+.++++||||||||....
T Consensus 486 ~~~~~-~~~~~~i~~i~~L~~~--~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~ 562 (1123)
T PRK11448 486 TKIEG-DQTFASIYDIKGLEDK--FPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEG 562 (1123)
T ss_pred ccccc-ccchhhhhchhhhhhh--cccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccc
Confidence 74221 1111112221111111 12335789999999997765432 245678999999999986421
Q ss_pred --------CCHHHHHHHHHhCCCCCeEEEEcccccHHHHHHHHHHcCCCeE---------------------EEeC--CC
Q 013858 285 --------GFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQ---------------------VKVG--KV 333 (435)
Q Consensus 285 --------~~~~~i~~i~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~---------------------i~~~--~~ 333 (435)
++...+..++.++. ...|+||||+-.. ...+++.|+. +... ..
T Consensus 563 ~~~~~~~~~~~~~yr~iL~yFd--A~~IGLTATP~r~----t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~ 636 (1123)
T PRK11448 563 ELQFRDQLDYVSKYRRVLDYFD--AVKIGLTATPALH----TTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQE 636 (1123)
T ss_pred hhccchhhhHHHHHHHHHhhcC--ccEEEEecCCccc----hhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEeccc
Confidence 12467788888764 3479999999532 2233333322 1100 00
Q ss_pred CCCCCc---eE-------EE-EEEcCh---------------hhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHH
Q 013858 334 SSPTAN---VI-------QI-LEKVSE---------------NEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRC 387 (435)
Q Consensus 334 ~~~~~~---i~-------~~-~~~~~~---------------~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~ 387 (435)
...... +. .. ....+. ......+.+.+.++. .. ..++++||||.++++|
T Consensus 637 gi~~~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l----~~-~~~~KtiIF~~s~~HA 711 (1123)
T PRK11448 637 GIHFEKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYL----DP-TGEGKTLIFAATDAHA 711 (1123)
T ss_pred cccccccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHH----hc-cCCCcEEEEEcCHHHH
Confidence 000000 00 00 000000 000111222222211 11 2247899999999999
Q ss_pred HHHHHHHHhC------C---CcEEEecCCCCHHHHHHHHHHHHcCCC-cEEEEcCCC
Q 013858 388 DEVSEALVAE------G---LHAVALHGGRNQSDRESALRDFRNGST-NILVFSYKL 434 (435)
Q Consensus 388 ~~l~~~L~~~------~---~~v~~lh~~~~~~~R~~~~~~f~~g~~-~VLVaT~~L 434 (435)
+.+++.|++. + ..|..+||+.+ ++..+++.|+++.. +|+|++++|
T Consensus 712 ~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL 766 (1123)
T PRK11448 712 DMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLL 766 (1123)
T ss_pred HHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEeccc
Confidence 9999988763 2 24667999986 57789999999987 699999987
No 107
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.85 E-value=2.3e-19 Score=188.90 Aligned_cols=158 Identities=16% Similarity=0.124 Sum_probs=95.8
Q ss_pred CCCcHHHHHHHHHHhcC--CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhh
Q 013858 142 TRPTSIQAQAMPVALSG--RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSR 219 (435)
Q Consensus 142 ~~p~~~Q~~~i~~~~~~--~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~ 219 (435)
..|.|+|......++.. ..++++.++|.|||..+.+. +..+... +...++||+||. .|..||..++.+..
T Consensus 151 ~~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAgli-l~~l~~~-----g~~~rvLIVvP~-sL~~QW~~El~~kF- 222 (956)
T PRK04914 151 ASLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMI-IHQQLLT-----GRAERVLILVPE-TLQHQWLVEMLRRF- 222 (956)
T ss_pred CCCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHH-HHHHHHc-----CCCCcEEEEcCH-HHHHHHHHHHHHHh-
Confidence 45899999998887644 36999999999999876443 3333332 223579999998 89999999885543
Q ss_pred cCCCceEEEEECCCCHHHHH--HHHhCCCcEEEECcHHHHHHH-HcCCCCCCCceEEEEecCCcccCCC-CHHHHHHHHH
Q 013858 220 SLDSFKTAIVVGGTNIAEQR--SELRGGVSIVVATPGRFLDHL-QQGNTSLSRVSFVILDEADRMLDMG-FEPQIREVMQ 295 (435)
Q Consensus 220 ~~~~~~~~~~~g~~~~~~~~--~~~~~~~~I~v~T~~~l~~~l-~~~~~~l~~~~~iIiDEah~~~~~~-~~~~i~~i~~ 295 (435)
++...++.++....... .......+++|++.+.+.+.- ....+.-..+++|||||||++.+.. -.......+.
T Consensus 223 ---~l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~ 299 (956)
T PRK04914 223 ---NLRFSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVE 299 (956)
T ss_pred ---CCCeEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHH
Confidence 24444333322111000 011123579999998886421 1112223478999999999886321 1111122222
Q ss_pred hCC-CCCeEEEEcccc
Q 013858 296 NLP-DKHQTLLFSATM 310 (435)
Q Consensus 296 ~~~-~~~q~i~~SATl 310 (435)
.+. ....++++|||+
T Consensus 300 ~La~~~~~~LLLTATP 315 (956)
T PRK04914 300 QLAEVIPGVLLLTATP 315 (956)
T ss_pred HHhhccCCEEEEEcCc
Confidence 222 223479999997
No 108
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.84 E-value=1.2e-19 Score=183.11 Aligned_cols=285 Identities=21% Similarity=0.239 Sum_probs=195.3
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHH--HHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChh
Q 013858 128 LHPSIMKDIEFHEYTRPTSIQAQAM--PVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRE 205 (435)
Q Consensus 128 l~~~l~~~l~~~~~~~p~~~Q~~~i--~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~ 205 (435)
++....-..+..|+...+.||.+|+ +.++.+++.|...||+.|||+++.+-++..++.. +..++.+.|...
T Consensus 208 ~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~-------rr~~llilp~vs 280 (1008)
T KOG0950|consen 208 PTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR-------RRNVLLILPYVS 280 (1008)
T ss_pred chHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHH-------hhceeEecceee
Confidence 3344444567778999999999998 6678889999999999999999999888877765 356899999988
Q ss_pred hHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHc--CCCCCCCceEEEEecCCcccC
Q 013858 206 LAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQ--GNTSLSRVSFVILDEADRMLD 283 (435)
Q Consensus 206 la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~--~~~~l~~~~~iIiDEah~~~~ 283 (435)
.+..-...+..+.... ++.+-..+|...... ..+...|.|+|.++-...+.. ....+..+++||+||.|.+.+
T Consensus 281 iv~Ek~~~l~~~~~~~-G~~ve~y~g~~~p~~----~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d 355 (1008)
T KOG0950|consen 281 IVQEKISALSPFSIDL-GFPVEEYAGRFPPEK----RRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGD 355 (1008)
T ss_pred hhHHHHhhhhhhcccc-CCcchhhcccCCCCC----cccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeec
Confidence 8777777778887766 677777776554332 234468999999987655443 133567899999999999999
Q ss_pred CCCHHHHHHHHHhC-----CCCCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCCCCCc---eEEEEEEcChhhHH--
Q 013858 284 MGFEPQIREVMQNL-----PDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTAN---VIQILEKVSENEKV-- 353 (435)
Q Consensus 284 ~~~~~~i~~i~~~~-----~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---i~~~~~~~~~~~k~-- 353 (435)
.+.+..++.++.++ ....|+|+||||+|..- +++.|+..-+...- ..+.+..+ +-..+...+...-.
T Consensus 356 ~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~~--lL~~~L~A~~y~t~-fRPv~L~E~ik~G~~i~~~~r~~~lr~ 432 (1008)
T KOG0950|consen 356 KGRGAILELLLAKILYENLETSVQIIGMSATIPNNS--LLQDWLDAFVYTTR-FRPVPLKEYIKPGSLIYESSRNKVLRE 432 (1008)
T ss_pred cccchHHHHHHHHHHHhccccceeEeeeecccCChH--HHHHHhhhhheecc-cCcccchhccCCCcccccchhhHHHHH
Confidence 88777777666553 23468999999997532 34444443222211 11111100 00011111100000
Q ss_pred --------------HHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHh-----------------------
Q 013858 354 --------------DRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVA----------------------- 396 (435)
Q Consensus 354 --------------~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~----------------------- 396 (435)
+.++..+.+.. ..+..+||||++++.|+.++..+..
T Consensus 433 ia~l~~~~~g~~dpD~~v~L~tet~-------~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~ 505 (1008)
T KOG0950|consen 433 IANLYSSNLGDEDPDHLVGLCTETA-------PEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNL 505 (1008)
T ss_pred hhhhhhhhcccCCCcceeeehhhhh-------hcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhH
Confidence 12222222222 1234599999999999998866632
Q ss_pred ---------------CCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 397 ---------------EGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 397 ---------------~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
..++|+++|+|++.++|+.+...|++|...|++||++|
T Consensus 506 lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTl 558 (1008)
T KOG0950|consen 506 LRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTL 558 (1008)
T ss_pred hhcCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchh
Confidence 02468999999999999999999999999999999986
No 109
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.82 E-value=3.7e-18 Score=180.42 Aligned_cols=270 Identities=16% Similarity=0.200 Sum_probs=171.1
Q ss_pred CCcHHHHHHHHHHh----cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHh
Q 013858 143 RPTSIQAQAMPVAL----SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (435)
Q Consensus 143 ~p~~~Q~~~i~~~~----~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~ 218 (435)
.+++||.+++.+++ +|.+.|++.++|.|||+.. +.++.++.... +....+|||||. .+..+|.+++.+++
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQa-IalL~~L~~~~----~~~gp~LIVvP~-SlL~nW~~Ei~kw~ 242 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQT-ISLLGYLHEYR----GITGPHMVVAPK-STLGNWMNEIRRFC 242 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHH-HHHHHHHHHhc----CCCCCEEEEeCh-HHHHHHHHHHHHHC
Confidence 57999999999986 5778999999999999875 55555544321 123458999998 66788999999987
Q ss_pred hcCCCceEEEEECCCCHHHHHHH---HhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCCCHHHHHHHHH
Q 013858 219 RSLDSFKTAIVVGGTNIAEQRSE---LRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQ 295 (435)
Q Consensus 219 ~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~~~~~i~~i~~ 295 (435)
+.+++..++|.......... .....+|+|+|++.+.+... .+.--.+++|||||||++.+.. ..+...+.
T Consensus 243 ---p~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~--~L~k~~W~~VIvDEAHrIKN~~--Sklskalr 315 (1033)
T PLN03142 243 ---PVLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKT--ALKRFSWRYIIIDEAHRIKNEN--SLLSKTMR 315 (1033)
T ss_pred ---CCCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHH--HhccCCCCEEEEcCccccCCHH--HHHHHHHH
Confidence 35677777765443322111 13457899999999876543 2333468899999999987742 34445555
Q ss_pred hCCCCCeEEEEcccccH-HHHHHH------------------HHHcC-----------------CCeEEEeCCC--CCCC
Q 013858 296 NLPDKHQTLLFSATMPV-EIEALA------------------QEYLT-----------------DPVQVKVGKV--SSPT 337 (435)
Q Consensus 296 ~~~~~~q~i~~SATl~~-~~~~~~------------------~~~~~-----------------~~~~i~~~~~--~~~~ 337 (435)
.+.... .+++|+|+-. .+.++. ..|.. .|+.+.-... ....
T Consensus 316 ~L~a~~-RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~L 394 (1033)
T PLN03142 316 LFSTNY-RLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGL 394 (1033)
T ss_pred HhhcCc-EEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhC
Confidence 555444 5889999721 111111 00000 0000000000 0000
Q ss_pred CceEEEEEEc---------------------------------------------------------------ChhhHHH
Q 013858 338 ANVIQILEKV---------------------------------------------------------------SENEKVD 354 (435)
Q Consensus 338 ~~i~~~~~~~---------------------------------------------------------------~~~~k~~ 354 (435)
+........+ ....|+.
T Consensus 395 PpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~ 474 (1033)
T PLN03142 395 PPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMV 474 (1033)
T ss_pred CCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHH
Confidence 1111111111 0112333
Q ss_pred HHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCC---CcEEEEc
Q 013858 355 RLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGS---TNILVFS 431 (435)
Q Consensus 355 ~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~---~~VLVaT 431 (435)
.+..++.+.. ..+.++|||+......+.|.++|...|+.+..+||+++..+|..+++.|++.. .-+|++|
T Consensus 475 lLdkLL~~Lk-------~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLST 547 (1033)
T PLN03142 475 LLDKLLPKLK-------ERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLST 547 (1033)
T ss_pred HHHHHHHHHH-------hcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEec
Confidence 3333333222 34568999999999999999999999999999999999999999999997632 3467888
Q ss_pred CC
Q 013858 432 YK 433 (435)
Q Consensus 432 ~~ 433 (435)
.+
T Consensus 548 rA 549 (1033)
T PLN03142 548 RA 549 (1033)
T ss_pred cc
Confidence 65
No 110
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.82 E-value=2.3e-18 Score=174.86 Aligned_cols=267 Identities=24% Similarity=0.335 Sum_probs=180.7
Q ss_pred HHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHH
Q 013858 134 KDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKE 213 (435)
Q Consensus 134 ~~l~~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~ 213 (435)
+..++....+|+..|+-....+..|++.-+.||||.|||+ |.+.+-.++... |.++++|+||+.|+.|+++.
T Consensus 73 ~fF~k~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTT-fg~~~sl~~a~k-------gkr~yii~PT~~Lv~Q~~~k 144 (1187)
T COG1110 73 EFFKKATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTT-FGLLMSLYLAKK-------GKRVYIIVPTTTLVRQVYER 144 (1187)
T ss_pred HHHHHhhCCCchHHHHHHHHHHHcCCceEEEcCCCCchhH-HHHHHHHHHHhc-------CCeEEEEecCHHHHHHHHHH
Confidence 3344444559999999999999999999999999999995 344444444442 68899999999999999999
Q ss_pred HHHHhhcCCCceEEEEECCC-CHHH---HHHHH-hCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccC-----
Q 013858 214 VKALSRSLDSFKTAIVVGGT-NIAE---QRSEL-RGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLD----- 283 (435)
Q Consensus 214 ~~~~~~~~~~~~~~~~~g~~-~~~~---~~~~~-~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~----- 283 (435)
++.|+.....+.+...+.+. ...+ ....+ .++.+|+|+|.+-|...... +.-.++++|++|++|.++.
T Consensus 145 l~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~--L~~~kFdfifVDDVDA~LkaskNv 222 (1187)
T COG1110 145 LKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEE--LSKLKFDFIFVDDVDAILKASKNV 222 (1187)
T ss_pred HHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHH--hcccCCCEEEEccHHHHHhccccH
Confidence 99999765434444434443 2222 22223 35789999999877655542 2224799999999996553
Q ss_pred ------CCCHHH-------HHHHHHhC------------------------CCCCeEEEEcccccHH-H-HHHHHHHcCC
Q 013858 284 ------MGFEPQ-------IREVMQNL------------------------PDKHQTLLFSATMPVE-I-EALAQEYLTD 324 (435)
Q Consensus 284 ------~~~~~~-------i~~i~~~~------------------------~~~~q~i~~SATl~~~-~-~~~~~~~~~~ 324 (435)
.||... +..+...+ .+.-++|+.|||..+. . ..+.+..++
T Consensus 223 DriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlg- 301 (1187)
T COG1110 223 DRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLG- 301 (1187)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhC-
Confidence 222221 11111111 1245789999998432 2 223444443
Q ss_pred CeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCc---hHHHHHHHHHHHhCCCcE
Q 013858 325 PVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVER---KTRCDEVSEALVAEGLHA 401 (435)
Q Consensus 325 ~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~---~~~~~~l~~~L~~~~~~v 401 (435)
+.++.......++...+......++...+++.+ . ...|||++. ++.++.++++|+..|+++
T Consensus 302 ---FevG~~~~~LRNIvD~y~~~~~~e~~~elvk~l---G----------~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a 365 (1187)
T COG1110 302 ---FEVGSGGEGLRNIVDIYVESESLEKVVELVKKL---G----------DGGLIFVPIDYGREKAEELAEYLRSHGINA 365 (1187)
T ss_pred ---CccCccchhhhheeeeeccCccHHHHHHHHHHh---C----------CCeEEEEEcHHhHHHHHHHHHHHHhcCceE
Confidence 223433334455555555554444444443333 1 138999998 999999999999999999
Q ss_pred EEecCCCCHHHHHHHHHHHHcCCCcEEEEcC
Q 013858 402 VALHGGRNQSDRESALRDFRNGSTNILVFSY 432 (435)
Q Consensus 402 ~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~ 432 (435)
..+|++- ...++.|..|+++|||+..
T Consensus 366 ~~~~a~~-----~~~le~F~~GeidvLVGvA 391 (1187)
T COG1110 366 ELIHAEK-----EEALEDFEEGEVDVLVGVA 391 (1187)
T ss_pred EEeeccc-----hhhhhhhccCceeEEEEec
Confidence 9999943 6789999999999999864
No 111
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.81 E-value=6.3e-18 Score=172.86 Aligned_cols=270 Identities=18% Similarity=0.191 Sum_probs=183.5
Q ss_pred CCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhh
Q 013858 140 EYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSR 219 (435)
Q Consensus 140 ~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~ 219 (435)
--.+|++.|..+--.+..|+ |..+.||+|||+++.+|++...+. |..+-+++|+..||.+-++.+..+..
T Consensus 77 ~g~~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~--------G~~v~vvT~neyLA~Rd~e~~~~~~~ 146 (796)
T PRK12906 77 LGLRPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALT--------GKGVHVVTVNEYLSSRDATEMGELYR 146 (796)
T ss_pred hCCCCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHc--------CCCeEEEeccHHHHHhhHHHHHHHHH
Confidence 33578999999988887777 999999999999999998887666 67899999999999999999999998
Q ss_pred cCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHH-HHHHc------CCCCCCCceEEEEecCCc-ccCCC------
Q 013858 220 SLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFL-DHLQQ------GNTSLSRVSFVILDEADR-MLDMG------ 285 (435)
Q Consensus 220 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~-~~l~~------~~~~l~~~~~iIiDEah~-~~~~~------ 285 (435)
.+ ++.++++.++....+....+ .++|+++|..-|- +++.. .....+.+.+.||||+|. +++..
T Consensus 147 ~L-Gl~vg~i~~~~~~~~r~~~y--~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLii 223 (796)
T PRK12906 147 WL-GLTVGLNLNSMSPDEKRAAY--NCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLII 223 (796)
T ss_pred hc-CCeEEEeCCCCCHHHHHHHh--cCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceec
Confidence 87 79999999887776655444 4799999997762 22221 112345688999999994 33310
Q ss_pred ---------CHHHHHHHHHhCCC-------------------CC------------------------------------
Q 013858 286 ---------FEPQIREVMQNLPD-------------------KH------------------------------------ 301 (435)
Q Consensus 286 ---------~~~~i~~i~~~~~~-------------------~~------------------------------------ 301 (435)
....+..+...+.. ..
T Consensus 224 sg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~ 303 (796)
T PRK12906 224 SGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQ 303 (796)
T ss_pred CCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHH
Confidence 11111111111110 01
Q ss_pred -------------------------------------------------------------------------eEEEEcc
Q 013858 302 -------------------------------------------------------------------------QTLLFSA 308 (435)
Q Consensus 302 -------------------------------------------------------------------------q~i~~SA 308 (435)
++-+||.
T Consensus 304 Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTG 383 (796)
T PRK12906 304 ALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTG 383 (796)
T ss_pred HHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCC
Confidence 1123333
Q ss_pred cccHHHHHHHHHHcCCCeEEEeCCCCCCCCceE-EEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHH
Q 013858 309 TMPVEIEALAQEYLTDPVQVKVGKVSSPTANVI-QILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRC 387 (435)
Q Consensus 309 Tl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~-~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~ 387 (435)
|...+..++.+-|-- ++.. -+...+..... ....+.....|...+.+.+...+ ..+.++||||+++..+
T Consensus 384 Ta~~e~~Ef~~iY~l-~vv~--IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~-------~~g~pvLI~t~si~~s 453 (796)
T PRK12906 384 TAKTEEEEFREIYNM-EVIT--IPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERH-------AKGQPVLVGTVAIESS 453 (796)
T ss_pred CCHHHHHHHHHHhCC-CEEE--cCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHH-------hCCCCEEEEeCcHHHH
Confidence 332222222222211 1111 11111111111 12344566788888888887655 3445799999999999
Q ss_pred HHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 388 DEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 388 ~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
+.+++.|.+.|+++..+|+++.+.++..+.+.++.|. |+||||+.
T Consensus 454 e~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmA 498 (796)
T PRK12906 454 ERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMA 498 (796)
T ss_pred HHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccc
Confidence 9999999999999999999999777777777777776 99999973
No 112
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.79 E-value=4.3e-18 Score=178.25 Aligned_cols=281 Identities=21% Similarity=0.189 Sum_probs=174.1
Q ss_pred CCCcHHHHHHHHHHhcC---C-CEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHH
Q 013858 142 TRPTSIQAQAMPVALSG---R-DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (435)
Q Consensus 142 ~~p~~~Q~~~i~~~~~~---~-~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~ 217 (435)
..+.+.|..++..+... . .+++.+|||+|||++.+.+++...... ....++++++.|++.++.+++++++..
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~----~~~~~r~i~vlP~~t~ie~~~~r~~~~ 269 (733)
T COG1203 194 HEGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK----IKLKSRVIYVLPFRTIIEDMYRRAKEI 269 (733)
T ss_pred chhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc----ccccceEEEEccHHHHHHHHHHHHHhh
Confidence 34589999999988843 4 799999999999999988877765542 113688999999999999999999887
Q ss_pred hhcCCCceEEEEECCCCHHHHHHH-----H---------hCCCcEEEECcHHHHHHHHc-CCCC-C--CCceEEEEecCC
Q 013858 218 SRSLDSFKTAIVVGGTNIAEQRSE-----L---------RGGVSIVVATPGRFLDHLQQ-GNTS-L--SRVSFVILDEAD 279 (435)
Q Consensus 218 ~~~~~~~~~~~~~g~~~~~~~~~~-----~---------~~~~~I~v~T~~~l~~~l~~-~~~~-l--~~~~~iIiDEah 279 (435)
.... .+......+.....-.... . .....+.++||-........ ..+. + --.+.+|+||+|
T Consensus 270 ~~~~-~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h 348 (733)
T COG1203 270 FGLF-SVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVH 348 (733)
T ss_pred hccc-ccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHH
Confidence 6443 1221112222221111000 0 01123444444333332111 1111 1 124789999999
Q ss_pred cccCCCCHHHHHHHHHhC-CCCCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCCCCC-ceEEEE-EEcChhhHH-HH
Q 013858 280 RMLDMGFEPQIREVMQNL-PDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTA-NVIQIL-EKVSENEKV-DR 355 (435)
Q Consensus 280 ~~~~~~~~~~i~~i~~~~-~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~i~~~~-~~~~~~~k~-~~ 355 (435)
.+-+..+...+..++..+ ..+..+|+||||+|+..+.....++.....+.......+.. ...... ......... ..
T Consensus 349 ~~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 428 (733)
T COG1203 349 LYADETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEE 428 (733)
T ss_pred hhcccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHh
Confidence 665543344444433333 23567999999999999998888876554444332211000 000000 000000000 01
Q ss_pred HHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHH----cCCCcEEEEc
Q 013858 356 LLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFR----NGSTNILVFS 431 (435)
Q Consensus 356 l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~----~g~~~VLVaT 431 (435)
......... ..+.+++|.|||+..|..+++.|+..+..+..+||.+...+|.+.++.++ .+...|+|||
T Consensus 429 ~~~~~~~~~-------~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaT 501 (733)
T COG1203 429 LIELISEEV-------KEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVAT 501 (733)
T ss_pred hhhcchhhh-------ccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEe
Confidence 112221111 44567999999999999999999998878999999999999999888654 5789999999
Q ss_pred CCC
Q 013858 432 YKL 434 (435)
Q Consensus 432 ~~L 434 (435)
.++
T Consensus 502 QVI 504 (733)
T COG1203 502 QVI 504 (733)
T ss_pred eEE
Confidence 864
No 113
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.77 E-value=2.2e-16 Score=168.72 Aligned_cols=147 Identities=18% Similarity=0.256 Sum_probs=105.3
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHH----HHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccC
Q 013858 128 LHPSIMKDIEFHEYTRPTSIQAQAMP----VALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPT 203 (435)
Q Consensus 128 l~~~l~~~l~~~~~~~p~~~Q~~~i~----~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~ 203 (435)
+++.+.+.+...||. +++.|.+.+. .+.+++++++.||||+|||++|++|++.+... +.+++|.+||
T Consensus 231 ~~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~~--------~~~vvi~t~t 301 (850)
T TIGR01407 231 LSSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAIT--------EKPVVISTNT 301 (850)
T ss_pred ccHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhcC--------CCeEEEEeCc
Confidence 344667777778876 7899998776 44478899999999999999999999887541 4579999999
Q ss_pred hhhHHHHHH-HHHHHhhcCC-CceEEEEECCCCHH---H-----------------------------------------
Q 013858 204 RELAQQIEK-EVKALSRSLD-SFKTAIVVGGTNIA---E----------------------------------------- 237 (435)
Q Consensus 204 r~la~q~~~-~~~~~~~~~~-~~~~~~~~g~~~~~---~----------------------------------------- 237 (435)
++|..|+.. .+..+.+.++ .+++..+.|+.+.- .
T Consensus 302 ~~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~ 381 (850)
T TIGR01407 302 KVLQSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGG 381 (850)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCc
Confidence 999999855 4555554432 36677666654210 0
Q ss_pred ---------------------------HHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccC
Q 013858 238 ---------------------------QRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLD 283 (435)
Q Consensus 238 ---------------------------~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~ 283 (435)
........++|+|++...|+..+......+....++||||||++.+
T Consensus 382 ~~~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~d 454 (850)
T TIGR01407 382 NKMFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLPD 454 (850)
T ss_pred chhhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHHH
Confidence 0000112457999999888877655444467789999999998753
No 114
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.77 E-value=3.1e-17 Score=161.76 Aligned_cols=258 Identities=18% Similarity=0.257 Sum_probs=175.3
Q ss_pred CCcHHHHHHHHHHh----cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHh
Q 013858 143 RPTSIQAQAMPVAL----SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (435)
Q Consensus 143 ~p~~~Q~~~i~~~~----~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~ 218 (435)
.+++||.+.+.|+. +|-++|+..++|.|||+. .+.++.++...... .|| .||++|...|.+ |.+++++|+
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQ-tIs~l~yl~~~~~~---~GP-fLVi~P~StL~N-W~~Ef~rf~ 240 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQ-TISLLGYLKGRKGI---PGP-FLVIAPKSTLDN-WMNEFKRFT 240 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHH-HHHHHHHHHHhcCC---CCC-eEEEeeHhhHHH-HHHHHHHhC
Confidence 58999999999987 567899999999999986 47778887775422 234 899999977755 888888886
Q ss_pred hcCCCceEEEEECCCCHHHHHH-H--HhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCCCHHHHHHHHH
Q 013858 219 RSLDSFKTAIVVGGTNIAEQRS-E--LRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQ 295 (435)
Q Consensus 219 ~~~~~~~~~~~~g~~~~~~~~~-~--~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~~~~~i~~i~~ 295 (435)
|++++.+++|+...+.... . .....+|+|+|+++.++.-. .+.--.++|+|||||||+.|. ...+.++++
T Consensus 241 ---P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~--~lk~~~W~ylvIDEaHRiKN~--~s~L~~~lr 313 (971)
T KOG0385|consen 241 ---PSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKS--FLKKFNWRYLVIDEAHRIKNE--KSKLSKILR 313 (971)
T ss_pred ---CCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHH--HHhcCCceEEEechhhhhcch--hhHHHHHHH
Confidence 5789999999874433221 1 13468999999999987622 233346899999999999886 455667777
Q ss_pred hCCCCCeEEEEcccc-cHHHHHHH--------------------------------------------------------
Q 013858 296 NLPDKHQTLLFSATM-PVEIEALA-------------------------------------------------------- 318 (435)
Q Consensus 296 ~~~~~~q~i~~SATl-~~~~~~~~-------------------------------------------------------- 318 (435)
.+....+ +++|.|+ ...+.+++
T Consensus 314 ~f~~~nr-LLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sL 392 (971)
T KOG0385|consen 314 EFKTDNR-LLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSL 392 (971)
T ss_pred Hhcccce-eEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcC
Confidence 7766554 6667774 22221111
Q ss_pred -------------------------------------------------HHHcCCCeEEEeCCCCCCCCceEEEEEEcCh
Q 013858 319 -------------------------------------------------QEYLTDPVQVKVGKVSSPTANVIQILEKVSE 349 (435)
Q Consensus 319 -------------------------------------------------~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~ 349 (435)
+....+|..+.. ..+.+ .....-+.+..
T Consensus 393 ppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g-~ePg~--pyttdehLv~n 469 (971)
T KOG0385|consen 393 PPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDG-AEPGP--PYTTDEHLVTN 469 (971)
T ss_pred CCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCC-CCCCC--CCCcchHHHhc
Confidence 011111111111 00000 00111111223
Q ss_pred hhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCC
Q 013858 350 NEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGS 424 (435)
Q Consensus 350 ~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~ 424 (435)
..|+..|.++|.+.. ..++++|||..-....+-|-.+.--+++...-+.|.++-++|...++.|....
T Consensus 470 SGKm~vLDkLL~~Lk-------~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~ 537 (971)
T KOG0385|consen 470 SGKMLVLDKLLPKLK-------EQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPP 537 (971)
T ss_pred CcceehHHHHHHHHH-------hCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCC
Confidence 345555555555544 34567999999999999998888888999999999999999999999997654
No 115
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.76 E-value=1.4e-16 Score=165.20 Aligned_cols=272 Identities=18% Similarity=0.173 Sum_probs=155.2
Q ss_pred CCcHHHHHHHHHHh----c------CCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHH
Q 013858 143 RPTSIQAQAMPVAL----S------GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEK 212 (435)
Q Consensus 143 ~p~~~Q~~~i~~~~----~------~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~ 212 (435)
-|+++|..++..+. . .+..+++.+||||||++++. +...+... ...+++|+|+|+.+|..|+.+
T Consensus 238 ~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~-la~~l~~~-----~~~~~vl~lvdR~~L~~Q~~~ 311 (667)
T TIGR00348 238 YQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLF-AARKALEL-----LKNPKVFFVVDRRELDYQLMK 311 (667)
T ss_pred ehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHH-HHHHHHhh-----cCCCeEEEEECcHHHHHHHHH
Confidence 37899999998764 2 24699999999999987533 33333321 235889999999999999999
Q ss_pred HHHHHhhcCCCceEEEEECCCCHHHHHHHHh-CCCcEEEECcHHHHHHHHcC--CCCCCC-ceEEEEecCCcccCCCCHH
Q 013858 213 EVKALSRSLDSFKTAIVVGGTNIAEQRSELR-GGVSIVVATPGRFLDHLQQG--NTSLSR-VSFVILDEADRMLDMGFEP 288 (435)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~I~v~T~~~l~~~l~~~--~~~l~~-~~~iIiDEah~~~~~~~~~ 288 (435)
.|..++... + .+..+.......+. ....|+|+|.+.+.+.+... .+...+ --+||+|||||....
T Consensus 312 ~f~~~~~~~--~-----~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~---- 380 (667)
T TIGR00348 312 EFQSLQKDC--A-----ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYG---- 380 (667)
T ss_pred HHHhhCCCC--C-----cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccch----
Confidence 998886321 1 11122222223332 23689999999997644321 111111 238999999987432
Q ss_pred HHHHHH-HhCCCCCeEEEEcccccHHHHHHHHHHc----CCCeEEEeCCCC----CCCCceEEEEEE----cCh------
Q 013858 289 QIREVM-QNLPDKHQTLLFSATMPVEIEALAQEYL----TDPVQVKVGKVS----SPTANVIQILEK----VSE------ 349 (435)
Q Consensus 289 ~i~~i~-~~~~~~~q~i~~SATl~~~~~~~~~~~~----~~~~~i~~~~~~----~~~~~i~~~~~~----~~~------ 349 (435)
.+...+ ..++ +...++||||+-..........+ +.++.. ..-.. ....++...... +..
T Consensus 381 ~~~~~l~~~~p-~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~-Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~ 458 (667)
T TIGR00348 381 ELAKNLKKALK-NASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHR-YFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAF 458 (667)
T ss_pred HHHHHHHhhCC-CCcEEEEeCCCcccccccccccccCCCCCeEEE-eeHHHHhhcCCeeeEEEEecchhhccChHHHHHH
Confidence 333333 3454 45689999998432111111111 122111 11000 000011100000 000
Q ss_pred ---------------------------------hhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHh
Q 013858 350 ---------------------------------NEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVA 396 (435)
Q Consensus 350 ---------------------------------~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~ 396 (435)
......+.+.+.++...... ..+++++|||.++..|..+.+.|.+
T Consensus 459 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~--~~~~kamvv~~sr~~a~~~~~~l~~ 536 (667)
T TIGR00348 459 FDEIFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKE--LFKFKAMVVAISRYACVEEKNALDE 536 (667)
T ss_pred HHHHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhh--cccCceeEEEecHHHHHHHHHHHHh
Confidence 00111222222222222222 2357899999999999999999866
Q ss_pred C-----CCcEEEecCCCCHH---------------------HHHHHHHHHHc-CCCcEEEEcCCCC
Q 013858 397 E-----GLHAVALHGGRNQS---------------------DRESALRDFRN-GSTNILVFSYKLL 435 (435)
Q Consensus 397 ~-----~~~v~~lh~~~~~~---------------------~R~~~~~~f~~-g~~~VLVaT~~L~ 435 (435)
. +.....+++..... ....++++|++ +..+|||.+|.|+
T Consensus 537 ~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmll 602 (667)
T TIGR00348 537 ELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLL 602 (667)
T ss_pred hcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccc
Confidence 4 23455666654322 23478899976 6889999999885
No 116
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.76 E-value=3.7e-17 Score=163.68 Aligned_cols=268 Identities=18% Similarity=0.167 Sum_probs=174.9
Q ss_pred CCCcHHHHHHHHHHh----cCCC-EEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHH
Q 013858 142 TRPTSIQAQAMPVAL----SGRD-LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 216 (435)
Q Consensus 142 ~~p~~~Q~~~i~~~~----~~~~-vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~ 216 (435)
..|+.+|..||..+. .|++ +++++.||+|||.++ +.++..+++.+ ...++|+++.+++|+.|.+..+..
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTA-iaii~rL~r~~-----~~KRVLFLaDR~~Lv~QA~~af~~ 237 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTA-IAIIDRLIKSG-----WVKRVLFLADRNALVDQAYGAFED 237 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeH-HHHHHHHHhcc-----hhheeeEEechHHHHHHHHHHHHH
Confidence 568999999997765 5554 999999999999986 77777777743 357899999999999999988888
Q ss_pred HhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcC-----CCCCCCceEEEEecCCcccCCCCHHHHH
Q 013858 217 LSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQG-----NTSLSRVSFVILDEADRMLDMGFEPQIR 291 (435)
Q Consensus 217 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~-----~~~l~~~~~iIiDEah~~~~~~~~~~i~ 291 (435)
+.... -.+..+.+... ...++|.++|++.+...+... .+....+++||||||||- ....+.
T Consensus 238 ~~P~~--~~~n~i~~~~~--------~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRg----i~~~~~ 303 (875)
T COG4096 238 FLPFG--TKMNKIEDKKG--------DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRG----IYSEWS 303 (875)
T ss_pred hCCCc--cceeeeecccC--------CcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhh----HHhhhH
Confidence 76543 23333333221 124799999999998777654 344566999999999986 456777
Q ss_pred HHHHhCCCCCeEEEEcccccHHHHHHHHHHc-CCCeEEEe----------------------CCCCCCCCce--------
Q 013858 292 EVMQNLPDKHQTLLFSATMPVEIEALAQEYL-TDPVQVKV----------------------GKVSSPTANV-------- 340 (435)
Q Consensus 292 ~i~~~~~~~~q~i~~SATl~~~~~~~~~~~~-~~~~~i~~----------------------~~~~~~~~~i-------- 340 (435)
.|+.++..-. +++|||+..........|+ +.|+.... ...+......
T Consensus 304 ~I~dYFdA~~--~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g 381 (875)
T COG4096 304 SILDYFDAAT--QGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQG 381 (875)
T ss_pred HHHHHHHHHH--HhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhc
Confidence 8888876543 4559999776665555555 44432211 0001000000
Q ss_pred ------EEEEEEc------ChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhC-----CCcEEE
Q 013858 341 ------IQILEKV------SENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE-----GLHAVA 403 (435)
Q Consensus 341 ------~~~~~~~------~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~-----~~~v~~ 403 (435)
.+.+... .-......+...+...+... .+....+|+||||.+..+|+.+...|+.. |--+..
T Consensus 382 ~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~-~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~ 460 (875)
T COG4096 382 EAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRG-ATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMK 460 (875)
T ss_pred cccCcccccccccccchhccccchHHHHHHHHHHHhccc-cCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEE
Confidence 0001111 11223445556666655443 12133788999999999999999999875 344677
Q ss_pred ecCCCCHHHHHHHHHHHHc-C-CCcEEEEcCCC
Q 013858 404 LHGGRNQSDRESALRDFRN-G-STNILVFSYKL 434 (435)
Q Consensus 404 lh~~~~~~~R~~~~~~f~~-g-~~~VLVaT~~L 434 (435)
+.|+-.+.++ .++.|.. . --+|.|+.++|
T Consensus 461 IT~d~~~~q~--~Id~f~~ke~~P~IaitvdlL 491 (875)
T COG4096 461 ITGDAEQAQA--LIDNFIDKEKYPRIAITVDLL 491 (875)
T ss_pred EeccchhhHH--HHHHHHhcCCCCceEEehhhh
Confidence 7777665433 3555544 3 34566665554
No 117
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.76 E-value=3.7e-17 Score=136.44 Aligned_cols=144 Identities=44% Similarity=0.630 Sum_probs=108.6
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHH
Q 013858 159 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQ 238 (435)
Q Consensus 159 ~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 238 (435)
+++++.++||+|||+++...+...... ...++++|++|++.++.|+.+.+...... ...+..+.++......
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~------~~~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 72 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS------LKGGQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQQ 72 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc------ccCCCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhHH
Confidence 468999999999999876655554332 12578999999999999999988887653 4677777777666655
Q ss_pred HHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEcccc
Q 013858 239 RSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATM 310 (435)
Q Consensus 239 ~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SATl 310 (435)
......+.+|+++|++.+.+...........+++|||||+|.+....+...............+++++|||+
T Consensus 73 ~~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 73 EKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred HHHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 555567799999999999888876555567899999999998766544433222333445677899999996
No 118
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.68 E-value=1.3e-16 Score=164.46 Aligned_cols=323 Identities=20% Similarity=0.251 Sum_probs=195.2
Q ss_pred CCCCCCcccCCCHHHHHHHHHHcCceEEecCCCCCCCCCCCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHh----
Q 013858 81 NWKPSDRVLRFNPEQIEEVRLRLNVDVTVASGSVPAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVAL---- 156 (435)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~---- 156 (435)
.|...+.+....+.+++.+..+.+....+..+. ..-..-..|..+...+..+.. ..++.||...+++++
T Consensus 315 TWE~~~~I~~~~~~~~~~~~~Re~sk~~p~~~~-~~~~~rp~~~Kle~qp~~~~g------~~LRdyQLeGlNWl~~~W~ 387 (1373)
T KOG0384|consen 315 TWEDAEDIAKKAQEEIEEFQSRENSKTLPNKGC-KYRPQRPRFRKLEKQPEYKGG------NELRDYQLEGLNWLLYSWY 387 (1373)
T ss_pred cccchhhhhhhHHHHHHHHhhhhccccCCCCcc-ccCccchhHHHhhcCcccccc------chhhhhhcccchhHHHHHH
Confidence 344444454445555666655544332222111 111222335554444444333 678999999999987
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHH
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIA 236 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~ 236 (435)
+++++|+..++|.|||.. .+..|.++...... .|| .||++|...+ ..|.+.|..++ ++++++++|....+
T Consensus 388 ~~~n~ILADEmgLgktvq-ti~fl~~l~~~~~~---~gp-flvvvplst~-~~W~~ef~~w~----~mn~i~y~g~~~sr 457 (1373)
T KOG0384|consen 388 KRNNCILADEMGLGKTVQ-TITFLSYLFHSLQI---HGP-FLVVVPLSTI-TAWEREFETWT----DMNVIVYHGNLESR 457 (1373)
T ss_pred hcccceehhhcCCCcchH-HHHHHHHHHHhhhc---cCC-eEEEeehhhh-HHHHHHHHHHh----hhceeeeecchhHH
Confidence 568899999999999975 36666666654322 244 7888998655 44889998887 57889999988777
Q ss_pred HHHHHHh----C-----CCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEc
Q 013858 237 EQRSELR----G-----GVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (435)
Q Consensus 237 ~~~~~~~----~-----~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~S 307 (435)
..++.+. . ..+++++|++.++..-.. +.--.+.+++||||||+.|. ...+...+..+.-..+ |+.|
T Consensus 458 ~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~--L~~i~w~~~~vDeahrLkN~--~~~l~~~l~~f~~~~r-llit 532 (1373)
T KOG0384|consen 458 QLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAE--LSKIPWRYLLVDEAHRLKND--ESKLYESLNQFKMNHR-LLIT 532 (1373)
T ss_pred HHHHHHHheecCCccccccceeehhhHHHhccHhh--hccCCcceeeecHHhhcCch--HHHHHHHHHHhcccce-eeec
Confidence 7665542 2 368999999998754321 22235789999999999875 3444445656555554 4555
Q ss_pred ccc-cHHHHHHHH--HHcC-----------------------------CCeEE---EeCCCCCCCCceEEEEEE------
Q 013858 308 ATM-PVEIEALAQ--EYLT-----------------------------DPVQV---KVGKVSSPTANVIQILEK------ 346 (435)
Q Consensus 308 ATl-~~~~~~~~~--~~~~-----------------------------~~~~i---~~~~~~~~~~~i~~~~~~------ 346 (435)
.|+ ...++++.. .|+. .|... .-+......+..++++..
T Consensus 533 gTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdvekslp~k~E~IlrVels~lQ 612 (1373)
T KOG0384|consen 533 GTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEKSLPPKEETILRVELSDLQ 612 (1373)
T ss_pred CCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhccCCCCCcceEEEeehhHHH
Confidence 664 333333320 0000 00000 000000001111111110
Q ss_pred -------------------------------------------cChhhH-------------HH----------HHHHHH
Q 013858 347 -------------------------------------------VSENEK-------------VD----------RLLALL 360 (435)
Q Consensus 347 -------------------------------------------~~~~~k-------------~~----------~l~~~l 360 (435)
-..+++ +. .|.++|
T Consensus 613 k~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~lI~sSGKlVLLDKLL 692 (1373)
T KOG0384|consen 613 KQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQALIQSSGKLVLLDKLL 692 (1373)
T ss_pred HHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHHHHHHHhcCcEEeHHHHH
Confidence 011111 11 111111
Q ss_pred HHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcC---CCcEEEEcC
Q 013858 361 VEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNG---STNILVFSY 432 (435)
Q Consensus 361 ~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g---~~~VLVaT~ 432 (435)
.+.. ..++++|||..-+...+-|+++|..++++..-|.|.+..+.|+..++.|..- ....|+||=
T Consensus 693 ~rLk-------~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTR 760 (1373)
T KOG0384|consen 693 PRLK-------EGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTR 760 (1373)
T ss_pred HHHh-------cCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecc
Confidence 1111 4567899999999999999999999999999999999999999999999753 445677763
No 119
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.68 E-value=2.6e-16 Score=137.95 Aligned_cols=150 Identities=20% Similarity=0.234 Sum_probs=100.4
Q ss_pred CCcHHHHHHHHHHhc-------CCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHH
Q 013858 143 RPTSIQAQAMPVALS-------GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVK 215 (435)
Q Consensus 143 ~p~~~Q~~~i~~~~~-------~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~ 215 (435)
.|+++|.+++..+.. ++.+++.+|||+|||.+++..+... .. ++++++|+..|+.|+...+.
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l-~~----------~~l~~~p~~~l~~Q~~~~~~ 71 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILEL-AR----------KVLIVAPNISLLEQWYDEFD 71 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHH-HC----------EEEEEESSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcc-cc----------ceeEecCHHHHHHHHHHHHH
Confidence 478999999999883 5789999999999999875333333 22 69999999999999999997
Q ss_pred HHhhcCCCceEEE------------EECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCC-----------CCCCCceE
Q 013858 216 ALSRSLDSFKTAI------------VVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGN-----------TSLSRVSF 272 (435)
Q Consensus 216 ~~~~~~~~~~~~~------------~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~-----------~~l~~~~~ 272 (435)
.+.... ..... ..................+++++|.+.|........ .....+++
T Consensus 72 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (184)
T PF04851_consen 72 DFGSEK--YNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDL 149 (184)
T ss_dssp HHSTTS--EEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESE
T ss_pred Hhhhhh--hhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCE
Confidence 766432 11110 111111112222334567899999999987764321 22346789
Q ss_pred EEEecCCcccCCCCHHH-HHHHHHhCCCCCeEEEEccccc
Q 013858 273 VILDEADRMLDMGFEPQ-IREVMQNLPDKHQTLLFSATMP 311 (435)
Q Consensus 273 iIiDEah~~~~~~~~~~-i~~i~~~~~~~~q~i~~SATl~ 311 (435)
||+||||+... .. +..++. .+...+|+||||+.
T Consensus 150 vI~DEaH~~~~----~~~~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 150 VIIDEAHHYPS----DSSYREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp EEEETGGCTHH----HHHHHHHHH--SSCCEEEEEESS-S
T ss_pred EEEehhhhcCC----HHHHHHHHc--CCCCeEEEEEeCcc
Confidence 99999998743 33 566665 44566899999985
No 120
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.67 E-value=5.2e-14 Score=139.88 Aligned_cols=277 Identities=17% Similarity=0.192 Sum_probs=174.3
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHHHHHHHh----cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEc
Q 013858 126 MCLHPSIMKDIEFHEYTRPTSIQAQAMPVAL----SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 201 (435)
Q Consensus 126 ~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~----~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~ 201 (435)
+.+|..+...| .+||+.++.++. ++...|+..++|.|||... +..|..+...+.. ...+||||
T Consensus 196 ~~vPg~I~~~L--------f~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQi-isFLaaL~~S~k~----~~paLIVC 262 (923)
T KOG0387|consen 196 FKVPGFIWSKL--------FPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQI-ISFLAALHHSGKL----TKPALIVC 262 (923)
T ss_pred ccccHHHHHHh--------hHHHHHHHHHHHHHHhccCCCeecccccCccchhH-HHHHHHHhhcccc----cCceEEEc
Confidence 45666666554 889999999987 3556999999999999742 4444444443222 24599999
Q ss_pred cChhhHHHHHHHHHHHhhcCCCceEEEEECCCCH--------HHHH-----HHHhCCCcEEEECcHHHHHHHHcCCCCCC
Q 013858 202 PTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNI--------AEQR-----SELRGGVSIVVATPGRFLDHLQQGNTSLS 268 (435)
Q Consensus 202 P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~--------~~~~-----~~~~~~~~I~v~T~~~l~~~l~~~~~~l~ 268 (435)
|. .+..||.++|+.++ +.+++.++++.... .... +....+.+|+++|+..+. +....+.-.
T Consensus 263 P~-Tii~qW~~E~~~w~---p~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r--~~~d~l~~~ 336 (923)
T KOG0387|consen 263 PA-TIIHQWMKEFQTWW---PPFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFR--IQGDDLLGI 336 (923)
T ss_pred cH-HHHHHHHHHHHHhC---cceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhc--ccCcccccc
Confidence 98 66788999999887 35788888876552 1111 112234579999997762 222344455
Q ss_pred CceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEcccc-cHHHHHHH-----------------------------
Q 013858 269 RVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATM-PVEIEALA----------------------------- 318 (435)
Q Consensus 269 ~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SATl-~~~~~~~~----------------------------- 318 (435)
.++|+|+||.|++-|.. ..+...+..++.. +.|++|.|+ ...+.++.
T Consensus 337 ~W~y~ILDEGH~IrNpn--s~islackki~T~-~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~Gg 413 (923)
T KOG0387|consen 337 LWDYVILDEGHRIRNPN--SKISLACKKIRTV-HRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGG 413 (923)
T ss_pred cccEEEecCcccccCCc--cHHHHHHHhcccc-ceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccc
Confidence 78999999999988764 2333333344332 357777774 22222211
Q ss_pred ------------------------------------------------------------HHHcC----------CC-eE
Q 013858 319 ------------------------------------------------------------QEYLT----------DP-VQ 327 (435)
Q Consensus 319 ------------------------------------------------------------~~~~~----------~~-~~ 327 (435)
+.|+. ++ ..
T Consensus 414 yaNAs~~qv~~aykca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l 493 (923)
T KOG0387|consen 414 YANASPRQVQTAYKCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCL 493 (923)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccce
Confidence 01110 00 00
Q ss_pred EEe-------CCCC---CCCCceEEEE---EEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHH
Q 013858 328 VKV-------GKVS---SPTANVIQIL---EKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEAL 394 (435)
Q Consensus 328 i~~-------~~~~---~~~~~i~~~~---~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L 394 (435)
..+ +.+. .......+.. .......|+..+..++...... +.++|+|..++...+.|-.+|
T Consensus 494 ~Gi~iLrkICnHPdll~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kq-------g~rvllFsqs~~mLdilE~fL 566 (923)
T KOG0387|consen 494 SGIDILRKICNHPDLLDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQ-------GDRVLLFSQSRQMLDILESFL 566 (923)
T ss_pred echHHHHhhcCCcccccCcccccccCCCcCCChhhcchHHHHHHHHHHHhhC-------CCEEEEehhHHHHHHHHHHHH
Confidence 000 0000 0000000000 1123345777777777776643 446999999999999999999
Q ss_pred H-hCCCcEEEecCCCCHHHHHHHHHHHHcCC-CcEEEEc
Q 013858 395 V-AEGLHAVALHGGRNQSDRESALRDFRNGS-TNILVFS 431 (435)
Q Consensus 395 ~-~~~~~v~~lh~~~~~~~R~~~~~~f~~g~-~~VLVaT 431 (435)
. ..|+.++-+.|..+...|..++++|.++. ..|.+-|
T Consensus 567 ~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLT 605 (923)
T KOG0387|consen 567 RRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLT 605 (923)
T ss_pred HhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEE
Confidence 9 57999999999999999999999999764 4554443
No 121
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.67 E-value=1.3e-14 Score=148.05 Aligned_cols=265 Identities=22% Similarity=0.255 Sum_probs=174.8
Q ss_pred CCCcHHHHHHHHHHhcC----CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHH
Q 013858 142 TRPTSIQAQAMPVALSG----RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (435)
Q Consensus 142 ~~p~~~Q~~~i~~~~~~----~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~ 217 (435)
..+.+-|..++..+... +..++.|-||||||.+| +.++...+.. |..+|+++|-.+|..|+..+|+..
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvY-l~~i~~~L~~-------GkqvLvLVPEI~Ltpq~~~rf~~r 268 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVY-LEAIAKVLAQ-------GKQVLVLVPEIALTPQLLARFKAR 268 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHH-HHHHHHHHHc-------CCEEEEEeccccchHHHHHHHHHH
Confidence 35688899999998755 56999999999999998 6667666664 688999999999999999999776
Q ss_pred hhcCCCceEEEEECCCCHHHH----HHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcc-c-CC-C--CHH
Q 013858 218 SRSLDSFKTAIVVGGTNIAEQ----RSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRM-L-DM-G--FEP 288 (435)
Q Consensus 218 ~~~~~~~~~~~~~g~~~~~~~----~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~-~-~~-~--~~~ 288 (435)
+ +.++..++.+-+..+. .....+..+|+|+|--.+ -..++++.+|||||=|-. . +. + +..
T Consensus 269 F----g~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl-------F~Pf~~LGLIIvDEEHD~sYKq~~~prYhA 337 (730)
T COG1198 269 F----GAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL-------FLPFKNLGLIIVDEEHDSSYKQEDGPRYHA 337 (730)
T ss_pred h----CCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh-------cCchhhccEEEEeccccccccCCcCCCcCH
Confidence 5 3566667766654433 233346789999995333 235789999999999932 2 21 1 223
Q ss_pred HHHHHHHhCCCCCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEEEcCh-hh-----HHHHHHHHHHH
Q 013858 289 QIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSE-NE-----KVDRLLALLVE 362 (435)
Q Consensus 289 ~i~~i~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~-~~-----k~~~l~~~l~~ 362 (435)
+-..++.....++++|+-|||+.-+.. ...--+....+.+.............+..+.. .. --..+++.+++
T Consensus 338 RdvA~~Ra~~~~~pvvLgSATPSLES~--~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~ 415 (730)
T COG1198 338 RDVAVLRAKKENAPVVLGSATPSLESY--ANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRK 415 (730)
T ss_pred HHHHHHHHHHhCCCEEEecCCCCHHHH--HhhhcCceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHH
Confidence 333333333457889999999854433 33322233444443333211111222222221 11 12567777776
Q ss_pred HHHhhhccCCCCCcEEEEeCch----------------------------------------------------------
Q 013858 363 EAFLAEKSCHPFPLTIVFVERK---------------------------------------------------------- 384 (435)
Q Consensus 363 ~~~~~~~~~~~~~~~lVF~~~~---------------------------------------------------------- 384 (435)
.... +.++|+|+|++
T Consensus 416 ~l~~-------geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~ 488 (730)
T COG1198 416 TLER-------GEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRA 488 (730)
T ss_pred HHhc-------CCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEE
Confidence 6643 34588888854
Q ss_pred --HHHHHHHHHHHhC--CCcEEEecCCCCHH--HHHHHHHHHHcCCCcEEEEcCCC
Q 013858 385 --TRCDEVSEALVAE--GLHAVALHGGRNQS--DRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 385 --~~~~~l~~~L~~~--~~~v~~lh~~~~~~--~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
--.+++.+.|+.. +.++..+.++.+.. .-+..+..|.+|+.+|||.|.+|
T Consensus 489 ~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmi 544 (730)
T COG1198 489 VGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMI 544 (730)
T ss_pred ecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhh
Confidence 2345556666554 57788888887653 35678999999999999999876
No 122
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.66 E-value=4.6e-14 Score=141.95 Aligned_cols=267 Identities=21% Similarity=0.203 Sum_probs=179.5
Q ss_pred CCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhc
Q 013858 141 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRS 220 (435)
Q Consensus 141 ~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~ 220 (435)
-.+|++.|..+...++.|+ |..+.||.|||+++.+|++...+. |..+.|++|+..||.+-++.+..+...
T Consensus 76 g~r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~--------G~~VhvvT~NdyLA~RDae~m~~ly~~ 145 (764)
T PRK12326 76 GLRPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQ--------GRRVHVITVNDYLARRDAEWMGPLYEA 145 (764)
T ss_pred CCCcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHc--------CCCeEEEcCCHHHHHHHHHHHHHHHHh
Confidence 3579999999999998886 779999999999999998877665 678999999999999999999999988
Q ss_pred CCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHH-HHHHHc------CCCCCCCceEEEEecCCc-ccCCC-------
Q 013858 221 LDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQ------GNTSLSRVSFVILDEADR-MLDMG------- 285 (435)
Q Consensus 221 ~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l-~~~l~~------~~~~l~~~~~iIiDEah~-~~~~~------- 285 (435)
+ ++++.++.++....+....+ .|+|+++|..-| .+++.. .....+.+.+.||||+|. ++|..
T Consensus 146 L-GLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiIS 222 (764)
T PRK12326 146 L-GLTVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLVLA 222 (764)
T ss_pred c-CCEEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCceeee
Confidence 7 79999999988766655555 389999999765 122211 122346689999999994 33310
Q ss_pred -------CHHHHHHHHHhCCC--------C--------------------------------------------------
Q 013858 286 -------FEPQIREVMQNLPD--------K-------------------------------------------------- 300 (435)
Q Consensus 286 -------~~~~i~~i~~~~~~--------~-------------------------------------------------- 300 (435)
....+..+...+.+ +
T Consensus 223 g~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d~ 302 (764)
T PRK12326 223 GSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRDV 302 (764)
T ss_pred CCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcCC
Confidence 11111122222211 0
Q ss_pred ------------------------------------------------------------CeEEEEcccccHHHHHHHHH
Q 013858 301 ------------------------------------------------------------HQTLLFSATMPVEIEALAQE 320 (435)
Q Consensus 301 ------------------------------------------------------------~q~i~~SATl~~~~~~~~~~ 320 (435)
.++-+||.|.....+++.+-
T Consensus 303 dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~i 382 (764)
T PRK12326 303 HYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQF 382 (764)
T ss_pred cEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHHHH
Confidence 12344444444333333333
Q ss_pred HcCCCeEEEeCCCCCCCCce-EEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCC
Q 013858 321 YLTDPVQVKVGKVSSPTANV-IQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGL 399 (435)
Q Consensus 321 ~~~~~~~i~~~~~~~~~~~i-~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~ 399 (435)
|--+ +. .-+...+.... .....+....+|..++++.+.+.+. .+.|+||.+.+.+..+.+++.|.+.|+
T Consensus 383 Y~l~-Vv--~IPtnkp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~-------~GrPVLVgt~sI~~SE~ls~~L~~~gI 452 (764)
T PRK12326 383 YDLG-VS--VIPPNKPNIREDEADRVYATAAEKNDAIVEHIAEVHE-------TGQPVLVGTHDVAESEELAERLRAAGV 452 (764)
T ss_pred hCCc-EE--ECCCCCCceeecCCCceEeCHHHHHHHHHHHHHHHHH-------cCCCEEEEeCCHHHHHHHHHHHHhCCC
Confidence 3222 11 11111111111 1224455678889999888877663 345699999999999999999999999
Q ss_pred cEEEecCCCCHHHHHHHHHHHHcC-CCcEEEEcCC
Q 013858 400 HAVALHGGRNQSDRESALRDFRNG-STNILVFSYK 433 (435)
Q Consensus 400 ~v~~lh~~~~~~~R~~~~~~f~~g-~~~VLVaT~~ 433 (435)
++..|++.-...+-+ ++. +.| ...|-||||+
T Consensus 453 ~h~vLNAk~~~~EA~-IIa--~AG~~gaVTIATNM 484 (764)
T PRK12326 453 PAVVLNAKNDAEEAR-IIA--EAGKYGAVTVSTQM 484 (764)
T ss_pred cceeeccCchHhHHH-HHH--hcCCCCcEEEEecC
Confidence 999999875533322 222 334 4579999986
No 123
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.64 E-value=1.2e-13 Score=145.93 Aligned_cols=130 Identities=22% Similarity=0.344 Sum_probs=94.6
Q ss_pred CCcHHHHHHHHHHh----cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHH-HHHHHHH
Q 013858 143 RPTSIQAQAMPVAL----SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQI-EKEVKAL 217 (435)
Q Consensus 143 ~p~~~Q~~~i~~~~----~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~-~~~~~~~ 217 (435)
.+++-|.+....+. +++.+++.|+||+|||++|++|++... .+.+++|.+||++|+.|+ .+.+..+
T Consensus 245 e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~---------~~~~vvI~t~T~~Lq~Ql~~~~i~~l 315 (820)
T PRK07246 245 EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS---------DQRQIIVSVPTKILQDQIMAEEVKAI 315 (820)
T ss_pred ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc---------CCCcEEEEeCcHHHHHHHHHHHHHHH
Confidence 57999998555543 567899999999999999999988753 146799999999999999 4667777
Q ss_pred hhcCCCceEEEEECCCCHH---H--H------------------------------------------HHH---------
Q 013858 218 SRSLDSFKTAIVVGGTNIA---E--Q------------------------------------------RSE--------- 241 (435)
Q Consensus 218 ~~~~~~~~~~~~~g~~~~~---~--~------------------------------------------~~~--------- 241 (435)
++.+ ++++..+.|+.+.- . + +..
T Consensus 316 ~~~~-~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~~~ 394 (820)
T PRK07246 316 QEVF-HIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNLSQ 394 (820)
T ss_pred HHhc-CCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCCCC
Confidence 7665 56777766664310 0 0 000
Q ss_pred ---------------HhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccC
Q 013858 242 ---------------LRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLD 283 (435)
Q Consensus 242 ---------------~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~ 283 (435)
-...++|+|+.-..|+..+.... .+..++++||||||++.+
T Consensus 395 ~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~-~~p~~~~lIiDEAH~l~~ 450 (820)
T PRK07246 395 SSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK-DFARNKVLVFDEAQKLML 450 (820)
T ss_pred CCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc-CCCCCCEEEEECcchhHH
Confidence 01235799999888877664433 367899999999998753
No 124
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.63 E-value=7.1e-15 Score=148.50 Aligned_cols=159 Identities=18% Similarity=0.213 Sum_probs=119.1
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcCC
Q 013858 143 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 222 (435)
Q Consensus 143 ~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~~ 222 (435)
.|..||.+.+..+-.+..++|++||.+|||.+- .-++..++.. .+...+|+++|+.+|+.|+...+........
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfis-fY~iEKVLRe-----sD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t 584 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFIS-FYAIEKVLRE-----SDSDVVIYVAPTKALVNQVSANVYARFDTKT 584 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceecc-HHHHHHHHhh-----cCCCEEEEecchHHHhhhhhHHHHHhhccCc
Confidence 588999999999999999999999999999863 4455665553 2357799999999999999888866553322
Q ss_pred CceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHc---CCCCCCCceEEEEecCCcccCCCCHHHHHHHHHhCCC
Q 013858 223 SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQ---GNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPD 299 (435)
Q Consensus 223 ~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~---~~~~l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~ 299 (435)
-.+.+.+.|......... .-+|+|+|+-|+.+-..+.. ......++++||+||+|.+.+.....-|+.++...+
T Consensus 585 ~~rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li~- 661 (1330)
T KOG0949|consen 585 FLRGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLIP- 661 (1330)
T ss_pred cccchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhcC-
Confidence 233444444443333222 12599999999999888766 345678999999999999988776666777766554
Q ss_pred CCeEEEEccccc
Q 013858 300 KHQTLLFSATMP 311 (435)
Q Consensus 300 ~~q~i~~SATl~ 311 (435)
|.+|++|||+.
T Consensus 662 -CP~L~LSATig 672 (1330)
T KOG0949|consen 662 -CPFLVLSATIG 672 (1330)
T ss_pred -CCeeEEecccC
Confidence 67999999983
No 125
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.60 E-value=1.6e-13 Score=141.24 Aligned_cols=127 Identities=22% Similarity=0.279 Sum_probs=102.5
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcC
Q 013858 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (435)
Q Consensus 142 ~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~ 221 (435)
.+|+++|..+--.++.|+ |..+.||.|||+++.+|++...+. |..+.+++|+..||.+-++.+..+...+
T Consensus 81 m~~ydVQliGg~~Lh~G~--iaEM~TGEGKTLvA~l~a~l~al~--------G~~VhvvT~ndyLA~RD~e~m~~l~~~l 150 (913)
T PRK13103 81 MRHFDVQLIGGMTLHEGK--IAEMRTGEGKTLVGTLAVYLNALS--------GKGVHVVTVNDYLARRDANWMRPLYEFL 150 (913)
T ss_pred CCcchhHHHhhhHhccCc--cccccCCCCChHHHHHHHHHHHHc--------CCCEEEEeCCHHHHHHHHHHHHHHhccc
Confidence 578888988877776665 889999999999999999877665 6789999999999999999999999887
Q ss_pred CCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHH-HHHHHcC------CCCCCCceEEEEecCCcc
Q 013858 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQG------NTSLSRVSFVILDEADRM 281 (435)
Q Consensus 222 ~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l-~~~l~~~------~~~l~~~~~iIiDEah~~ 281 (435)
++.+.++.++....+....+. ++|+|+|..-+ .+++... ....+.+.++||||+|.+
T Consensus 151 -Gl~v~~i~~~~~~~err~~Y~--~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsi 214 (913)
T PRK13103 151 -GLSVGIVTPFQPPEEKRAAYA--ADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSI 214 (913)
T ss_pred -CCEEEEECCCCCHHHHHHHhc--CCEEEEcccccccchhhccceechhhhcccccceeEechhhhe
Confidence 799999988887776655555 89999999876 2223221 122478999999999954
No 126
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.57 E-value=1e-12 Score=134.81 Aligned_cols=268 Identities=16% Similarity=0.134 Sum_probs=174.8
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcC
Q 013858 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (435)
Q Consensus 142 ~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~ 221 (435)
.+|++.|..+.-.+.. .-|..+.||.|||+++.+|++...+. |..+-|++++..||..-++.+..+...+
T Consensus 75 ~r~ydvQlig~l~L~~--G~IaEm~TGEGKTL~a~l~ayl~aL~--------G~~VhVvT~NdyLA~RD~e~m~pvy~~L 144 (870)
T CHL00122 75 LRHFDVQLIGGLVLND--GKIAEMKTGEGKTLVATLPAYLNALT--------GKGVHIVTVNDYLAKRDQEWMGQIYRFL 144 (870)
T ss_pred CCCCchHhhhhHhhcC--CccccccCCCCchHHHHHHHHHHHhc--------CCceEEEeCCHHHHHHHHHHHHHHHHHc
Confidence 4688888887766654 46999999999999999998765444 5679999999999999999999999887
Q ss_pred CCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHH-HHHHc------CCCCCCCceEEEEecCCc-ccCCC--------
Q 013858 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFL-DHLQQ------GNTSLSRVSFVILDEADR-MLDMG-------- 285 (435)
Q Consensus 222 ~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~-~~l~~------~~~~l~~~~~iIiDEah~-~~~~~-------- 285 (435)
++.++++.++....+....+. ++|+++|..-|- +++.. .....+.+.+.||||||. ++|..
T Consensus 145 -GLsvg~i~~~~~~~err~aY~--~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeArTPLiISg 221 (870)
T CHL00122 145 -GLTVGLIQEGMSSEERKKNYL--KDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEARTPLIISG 221 (870)
T ss_pred -CCceeeeCCCCChHHHHHhcC--CCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccCCCceeccC
Confidence 799999988887776555554 799999996541 22211 122356789999999994 44410
Q ss_pred -------CHHHHHHHHHhCCCC----------------------------------------------------------
Q 013858 286 -------FEPQIREVMQNLPDK---------------------------------------------------------- 300 (435)
Q Consensus 286 -------~~~~i~~i~~~~~~~---------------------------------------------------------- 300 (435)
....+..+...+..+
T Consensus 222 ~~~~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~lf~~d~dY 301 (870)
T CHL00122 222 QSKTNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELFFKNVHY 301 (870)
T ss_pred CCccchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHhcCCcE
Confidence 000111111111100
Q ss_pred ----------------------------------------------------------CeEEEEcccccHHHHHHHHHHc
Q 013858 301 ----------------------------------------------------------HQTLLFSATMPVEIEALAQEYL 322 (435)
Q Consensus 301 ----------------------------------------------------------~q~i~~SATl~~~~~~~~~~~~ 322 (435)
.++.+||.|...+..++.+-|-
T Consensus 302 iV~dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~iY~ 381 (870)
T CHL00122 302 IVRNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELEFEKIYN 381 (870)
T ss_pred EEECCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHHHHHHHHHhC
Confidence 1235555555443333333332
Q ss_pred CCCeEEEeCCCCCCCCceE-EEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcE
Q 013858 323 TDPVQVKVGKVSSPTANVI-QILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHA 401 (435)
Q Consensus 323 ~~~~~i~~~~~~~~~~~i~-~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v 401 (435)
-+ +.+ -+...+..... ....+....+|..++++.+.+.+ ..+.|+||-+.+.+..+.|++.|.+.|+++
T Consensus 382 l~-vv~--IPtnkp~~R~d~~d~v~~t~~~K~~AI~~ei~~~~-------~~grPVLIgT~SIe~SE~ls~~L~~~gi~h 451 (870)
T CHL00122 382 LE-VVC--IPTHRPMLRKDLPDLIYKDELSKWRAIADECLQMH-------QTGRPILIGTTTIEKSELLSQLLKEYRLPH 451 (870)
T ss_pred CC-EEE--CCCCCCccceeCCCeEEeCHHHHHHHHHHHHHHHH-------hcCCCEEEeeCCHHHHHHHHHHHHHcCCcc
Confidence 21 111 12222221111 12445567778888888776655 344579999999999999999999999999
Q ss_pred EEecCCCCHHHHHH-HHHHHHcCCCcEEEEcCC
Q 013858 402 VALHGGRNQSDRES-ALRDFRNGSTNILVFSYK 433 (435)
Q Consensus 402 ~~lh~~~~~~~R~~-~~~~f~~g~~~VLVaT~~ 433 (435)
.++++.-...+++. ++.. ..-...|-||||+
T Consensus 452 ~vLNAk~~~~~~EA~IIA~-AG~~G~VTIATNM 483 (870)
T CHL00122 452 QLLNAKPENVRRESEIVAQ-AGRKGSITIATNM 483 (870)
T ss_pred ceeeCCCccchhHHHHHHh-cCCCCcEEEeccc
Confidence 99999753323332 3332 2235679999986
No 127
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.56 E-value=2e-14 Score=135.99 Aligned_cols=248 Identities=18% Similarity=0.170 Sum_probs=150.2
Q ss_pred CCCcHHHHHHHHHHhc-C--CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHh
Q 013858 142 TRPTSIQAQAMPVALS-G--RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (435)
Q Consensus 142 ~~p~~~Q~~~i~~~~~-~--~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~ 218 (435)
..++|||+.++..+.. | +..||+.|.|+|||++= +-+.+.+ +..|||+|.+..-+.||..+|+.+.
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVG-vTAa~ti----------kK~clvLcts~VSVeQWkqQfk~ws 369 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVG-VTAACTI----------KKSCLVLCTSAVSVEQWKQQFKQWS 369 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceee-eeeeeee----------cccEEEEecCccCHHHHHHHHHhhc
Confidence 5689999999999884 3 57999999999999753 2222222 3569999999999999999999987
Q ss_pred hcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcC--------CCCCCCceEEEEecCCcccCCCCHHHH
Q 013858 219 RSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQG--------NTSLSRVSFVILDEADRMLDMGFEPQI 290 (435)
Q Consensus 219 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~--------~~~l~~~~~iIiDEah~~~~~~~~~~i 290 (435)
.- .+-.++..+.+.. .....++.|+|+|+.++..--.+. -+.-+.|.++|+||+|-+-..-|+ ++
T Consensus 370 ti-~d~~i~rFTsd~K-----e~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFR-RV 442 (776)
T KOG1123|consen 370 TI-QDDQICRFTSDAK-----ERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFR-RV 442 (776)
T ss_pred cc-CccceEEeecccc-----ccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHH-HH
Confidence 43 2233333333321 124567899999998874222111 123456999999999976443233 33
Q ss_pred HHHHHhCCCCCeEEEEcccccHHHHHHH-HHHcCCCeEEEeC----------------CC-----------CCCCCceEE
Q 013858 291 REVMQNLPDKHQTLLFSATMPVEIEALA-QEYLTDPVQVKVG----------------KV-----------SSPTANVIQ 342 (435)
Q Consensus 291 ~~i~~~~~~~~q~i~~SATl~~~~~~~~-~~~~~~~~~i~~~----------------~~-----------~~~~~~i~~ 342 (435)
..+.. ..|+ +++|||+-.+..... -.|+--|.....+ .. .......+.
T Consensus 443 lsiv~---aHcK-LGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr 518 (776)
T KOG1123|consen 443 LSIVQ---AHCK-LGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKR 518 (776)
T ss_pred HHHHH---HHhh-ccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhh
Confidence 33333 3343 899999833221111 0111111110000 00 000000111
Q ss_pred EEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHc
Q 013858 343 ILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRN 422 (435)
Q Consensus 343 ~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~ 422 (435)
.+.++-...|+....-++..+- ..+.++|||....-.....+-.|.+ -+++|..+|.+|.++++.|+.
T Consensus 519 ~lLyvMNP~KFraCqfLI~~HE-------~RgDKiIVFsDnvfALk~YAikl~K-----pfIYG~Tsq~ERm~ILqnFq~ 586 (776)
T KOG1123|consen 519 MLLYVMNPNKFRACQFLIKFHE-------RRGDKIIVFSDNVFALKEYAIKLGK-----PFIYGPTSQNERMKILQNFQT 586 (776)
T ss_pred heeeecCcchhHHHHHHHHHHH-------hcCCeEEEEeccHHHHHHHHHHcCC-----ceEECCCchhHHHHHHHhccc
Confidence 2233334455555444444333 2345699999988777666666543 478999999999999999986
Q ss_pred C
Q 013858 423 G 423 (435)
Q Consensus 423 g 423 (435)
.
T Consensus 587 n 587 (776)
T KOG1123|consen 587 N 587 (776)
T ss_pred C
Confidence 5
No 128
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.56 E-value=2.2e-12 Score=132.20 Aligned_cols=129 Identities=20% Similarity=0.296 Sum_probs=102.0
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcC
Q 013858 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (435)
Q Consensus 142 ~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~ 221 (435)
.+|+++|..+--.++.|+ |..+.||-|||+++.+|++...+. |..+-|++++.-||..=++.+..+...+
T Consensus 84 ~r~ydVQliGgl~Lh~G~--IAEM~TGEGKTL~atlpaylnAL~--------GkgVhVVTvNdYLA~RDae~m~~vy~~L 153 (939)
T PRK12902 84 MRHFDVQLIGGMVLHEGQ--IAEMKTGEGKTLVATLPSYLNALT--------GKGVHVVTVNDYLARRDAEWMGQVHRFL 153 (939)
T ss_pred CCcchhHHHhhhhhcCCc--eeeecCCCChhHHHHHHHHHHhhc--------CCCeEEEeCCHHHHHhHHHHHHHHHHHh
Confidence 578888888877776665 899999999999999998877655 6779999999999999999999998887
Q ss_pred CCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHH-----HHHHHc--CCCCCCCceEEEEecCCc-ccC
Q 013858 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-----LDHLQQ--GNTSLSRVSFVILDEADR-MLD 283 (435)
Q Consensus 222 ~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l-----~~~l~~--~~~~l~~~~~iIiDEah~-~~~ 283 (435)
++.++++.++....+....+ .++|+++|...| .+.+.. .....+.+.+.||||||. ++|
T Consensus 154 -GLtvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSILID 220 (939)
T PRK12902 154 -GLSVGLIQQDMSPEERKKNY--ACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILID 220 (939)
T ss_pred -CCeEEEECCCCChHHHHHhc--CCCeEEecCCcccccchhhhhcccccccccCccceEEEecccceeec
Confidence 79999998877666554443 589999999887 333322 123457789999999994 444
No 129
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.56 E-value=7.1e-13 Score=137.19 Aligned_cols=128 Identities=23% Similarity=0.311 Sum_probs=93.9
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcCC
Q 013858 143 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 222 (435)
Q Consensus 143 ~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~~ 222 (435)
.|+++|..+=-.++.|+ |..+.||-|||+++.+|++...+. |..+-|++..--||.-=.+.+..+...+
T Consensus 138 ~~ydVQLiGgivLh~G~--IAEM~TGEGKTLvatlp~yLnAL~--------G~gVHvVTvNDYLA~RDaewm~p~y~fl- 206 (1025)
T PRK12900 138 VPYDVQLIGGIVLHSGK--ISEMATGEGKTLVSTLPTFLNALT--------GRGVHVVTVNDYLAQRDKEWMNPVFEFH- 206 (1025)
T ss_pred cccchHHhhhHHhhcCC--ccccCCCCCcchHhHHHHHHHHHc--------CCCcEEEeechHhhhhhHHHHHHHHHHh-
Confidence 56777777777776666 789999999999999999887666 4556667766788887778888888776
Q ss_pred CceEEEEECCCCHHHHHHHHhCCCcEEEECcHHH-HHHHHc------CCCCCCCceEEEEecCCc-ccC
Q 013858 223 SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQ------GNTSLSRVSFVILDEADR-MLD 283 (435)
Q Consensus 223 ~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l-~~~l~~------~~~~l~~~~~iIiDEah~-~~~ 283 (435)
++.++++..+.........+ .|+|.++|..-| .+++.. .....+.+.+.||||+|. +++
T Consensus 207 GLtVg~i~~~~~~~~Rr~aY--~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvDSvLID 273 (1025)
T PRK12900 207 GLSVGVILNTMRPEERREQY--LCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVDSVLID 273 (1025)
T ss_pred CCeeeeeCCCCCHHHHHHhC--CCcceecCCCccccccchhccccchhhhhccCCceEEEechhhhhhc
Confidence 79999998776666555444 489999998665 122211 123356789999999994 444
No 130
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.53 E-value=3.4e-13 Score=139.32 Aligned_cols=158 Identities=17% Similarity=0.233 Sum_probs=107.1
Q ss_pred CCcHHHHHHHHHHh--c--CCCEEEEccCCCchhHHhHHHHHH--HHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHH
Q 013858 143 RPTSIQAQAMPVAL--S--GRDLLGCAETGSGKTAAFTIPMIQ--HCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 216 (435)
Q Consensus 143 ~p~~~Q~~~i~~~~--~--~~~vii~~~TGsGKT~~~~~~~l~--~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~ 216 (435)
.++.||++.+.|+. + +-+.|+|..+|.|||+.. +-++. +...+.....-...-.||+||. .|+--|..++.+
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQt-icilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~k 1052 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQT-ICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKK 1052 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHH-HHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHH
Confidence 35889999999975 2 347999999999999864 22222 2111111111112228999998 899999999999
Q ss_pred HhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCCCHHHHHHHHHh
Q 013858 217 LSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQN 296 (435)
Q Consensus 217 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~~~~~i~~i~~~ 296 (435)
|+.. +++..++|+...+...+.-.++.+|+|+.++.+.+.+.. +.-..|-|+|+||-|-+.|. ...+-+..+.
T Consensus 1053 f~pf---L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~--l~~~~wNYcVLDEGHVikN~--ktkl~kavkq 1125 (1549)
T KOG0392|consen 1053 FFPF---LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY--LIKIDWNYCVLDEGHVIKNS--KTKLTKAVKQ 1125 (1549)
T ss_pred hcch---hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH--HHhcccceEEecCcceecch--HHHHHHHHHH
Confidence 8754 677777777766555555556689999999998644321 22235789999999977654 4455555556
Q ss_pred CCCCCeEEEEcccc
Q 013858 297 LPDKHQTLLFSATM 310 (435)
Q Consensus 297 ~~~~~q~i~~SATl 310 (435)
++...+ +++|.|+
T Consensus 1126 L~a~hR-LILSGTP 1138 (1549)
T KOG0392|consen 1126 LRANHR-LILSGTP 1138 (1549)
T ss_pred Hhhcce-EEeeCCC
Confidence 655553 6778885
No 131
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.52 E-value=2.8e-13 Score=138.85 Aligned_cols=153 Identities=17% Similarity=0.215 Sum_probs=117.3
Q ss_pred CcHHHHHHHHHHh----cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhh
Q 013858 144 PTSIQAQAMPVAL----SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSR 219 (435)
Q Consensus 144 p~~~Q~~~i~~~~----~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~ 219 (435)
++.||+..+.|+. ++-|.|+..++|.|||.. .|.+|.++......+ +-.||++||..+.+ |.-++++++
T Consensus 616 LReYQkiGLdWLatLYeknlNGILADEmGLGKTIQ-tISllAhLACeegnW----GPHLIVVpTsviLn-WEMElKRwc- 688 (1958)
T KOG0391|consen 616 LREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQ-TISLLAHLACEEGNW----GPHLIVVPTSVILN-WEMELKRWC- 688 (1958)
T ss_pred HHHHHHhhHHHHHHHHHhcccceehhhhcccchhH-HHHHHHHHHhcccCC----CCceEEeechhhhh-hhHHHhhhC-
Confidence 3789999999976 455899999999999965 578888887764333 33799999977655 999999998
Q ss_pred cCCCceEEEEECCCCHHHHHHHHhC---CCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCCCHHHHHHHHHh
Q 013858 220 SLDSFKTAIVVGGTNIAEQRSELRG---GVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQN 296 (435)
Q Consensus 220 ~~~~~~~~~~~g~~~~~~~~~~~~~---~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~~~~~i~~i~~~ 296 (435)
+++++..+||........+.-+. -.||.|+++..+.+.+. .|.-++|.|+||||||++.++ -..+|..++..
T Consensus 689 --PglKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~--AFkrkrWqyLvLDEaqnIKnf-ksqrWQAllnf 763 (1958)
T KOG0391|consen 689 --PGLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLT--AFKRKRWQYLVLDEAQNIKNF-KSQRWQALLNF 763 (1958)
T ss_pred --CcceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHH--HHHhhccceeehhhhhhhcch-hHHHHHHHhcc
Confidence 57899999998776655555443 35899999988877765 356678999999999998876 34678877765
Q ss_pred CCCCCeEEEEcccc
Q 013858 297 LPDKHQTLLFSATM 310 (435)
Q Consensus 297 ~~~~~q~i~~SATl 310 (435)
.. .+.++++.|+
T Consensus 764 ns--qrRLLLtgTP 775 (1958)
T KOG0391|consen 764 NS--QRRLLLTGTP 775 (1958)
T ss_pred ch--hheeeecCCc
Confidence 43 2357777775
No 132
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.50 E-value=1.3e-11 Score=126.31 Aligned_cols=266 Identities=15% Similarity=0.170 Sum_probs=173.1
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcC
Q 013858 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (435)
Q Consensus 142 ~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~ 221 (435)
.+|++.|..+--.+..|+ |..+.||-|||+++.+|++...+. |..+-|++...-||.-=++.+..+...+
T Consensus 77 ~r~ydVQliGglvLh~G~--IAEMkTGEGKTLvAtLpayLnAL~--------GkgVhVVTvNdYLA~RDae~mg~vy~fL 146 (925)
T PRK12903 77 KRPYDVQIIGGIILDLGS--VAEMKTGEGKTITSIAPVYLNALT--------GKGVIVSTVNEYLAERDAEEMGKVFNFL 146 (925)
T ss_pred CCcCchHHHHHHHHhcCC--eeeecCCCCccHHHHHHHHHHHhc--------CCceEEEecchhhhhhhHHHHHHHHHHh
Confidence 588999999988877775 799999999999999998776554 5668888888889988888888888777
Q ss_pred CCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHH-HHHHHcC------CCCCCCceEEEEecCCc-ccCCC--------
Q 013858 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQG------NTSLSRVSFVILDEADR-MLDMG-------- 285 (435)
Q Consensus 222 ~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l-~~~l~~~------~~~l~~~~~iIiDEah~-~~~~~-------- 285 (435)
++.++++..+.........+. |+|+++|..-| .+++... ....+.+.+.||||+|. +++..
T Consensus 147 -GLsvG~i~~~~~~~~rr~aY~--~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLIISg 223 (925)
T PRK12903 147 -GLSVGINKANMDPNLKREAYA--CDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIISG 223 (925)
T ss_pred -CCceeeeCCCCChHHHHHhcc--CCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCcccccC
Confidence 799999988777666555554 89999999776 2333221 22356788999999994 33311
Q ss_pred -------CHHHHHHHHHhCCC-------CC--------------------------------------------------
Q 013858 286 -------FEPQIREVMQNLPD-------KH-------------------------------------------------- 301 (435)
Q Consensus 286 -------~~~~i~~i~~~~~~-------~~-------------------------------------------------- 301 (435)
+...+..+...+.+ +.
T Consensus 224 ~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~dY 303 (925)
T PRK12903 224 GQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDVEY 303 (925)
T ss_pred CCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcCCce
Confidence 11112222222211 11
Q ss_pred -----------------------------------------------------------eEEEEcccccHHHHHHHHHHc
Q 013858 302 -----------------------------------------------------------QTLLFSATMPVEIEALAQEYL 322 (435)
Q Consensus 302 -----------------------------------------------------------q~i~~SATl~~~~~~~~~~~~ 322 (435)
++-+||.|...+..++.+-|-
T Consensus 304 iV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~iY~ 383 (925)
T PRK12903 304 IVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIYN 383 (925)
T ss_pred EEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHhC
Confidence 123333333222222222221
Q ss_pred CCCeEEEeCCCCCCCCceE-EEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcE
Q 013858 323 TDPVQVKVGKVSSPTANVI-QILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHA 401 (435)
Q Consensus 323 ~~~~~i~~~~~~~~~~~i~-~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v 401 (435)
..-+. -+...+..... ....+.....|..++++.+.+.+. .+.|+||.|.+.+..+.|++.|.+.|++.
T Consensus 384 l~Vv~---IPTnkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~-------~gqPVLVgT~SIe~SE~ls~~L~~~gi~h 453 (925)
T PRK12903 384 MRVNV---VPTNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHK-------KGQPILIGTAQVEDSETLHELLLEANIPH 453 (925)
T ss_pred CCEEE---CCCCCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHh-------cCCCEEEEeCcHHHHHHHHHHHHHCCCCc
Confidence 11111 11111111111 113445677888888888877653 34579999999999999999999999999
Q ss_pred EEecCCCCHHHHHHHHHHHHcC-CCcEEEEcCC
Q 013858 402 VALHGGRNQSDRESALRDFRNG-STNILVFSYK 433 (435)
Q Consensus 402 ~~lh~~~~~~~R~~~~~~f~~g-~~~VLVaT~~ 433 (435)
.++++... +++.-+=. +.| ...|.||||+
T Consensus 454 ~vLNAk~~--e~EA~IIa-~AG~~GaVTIATNM 483 (925)
T PRK12903 454 TVLNAKQN--AREAEIIA-KAGQKGAITIATNM 483 (925)
T ss_pred eeecccch--hhHHHHHH-hCCCCCeEEEeccc
Confidence 99999744 44433322 556 5689999986
No 133
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.46 E-value=3.2e-11 Score=129.96 Aligned_cols=132 Identities=18% Similarity=0.227 Sum_probs=91.9
Q ss_pred CCCcHHHHHHHHHHh----cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHH----
Q 013858 142 TRPTSIQAQAMPVAL----SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKE---- 213 (435)
Q Consensus 142 ~~p~~~Q~~~i~~~~----~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~---- 213 (435)
..+++-|.+.+..+. .++.+++.|+||+|||++|++|++.+.... +.+++|-++|+.|-.|+...
T Consensus 256 ~e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~~-------~~~vvIsT~T~~LQ~Ql~~kDiP~ 328 (928)
T PRK08074 256 YEKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAKKK-------EEPVVISTYTIQLQQQLLEKDIPL 328 (928)
T ss_pred CcCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhhcc-------CCeEEEEcCCHHHHHHHHHhhHHH
Confidence 478999999766554 567899999999999999999998765432 56799999999999998552
Q ss_pred HHHHhhcCCCceEEEEECCCCHH---H-----------------------------------------------------
Q 013858 214 VKALSRSLDSFKTAIVVGGTNIA---E----------------------------------------------------- 237 (435)
Q Consensus 214 ~~~~~~~~~~~~~~~~~g~~~~~---~----------------------------------------------------- 237 (435)
++++... .++++++-|..+.- .
T Consensus 329 L~~~~~~--~~~~~~lKGr~nYlcl~k~~~~l~~~~~~~~~~~~~~~ll~Wl~~T~tGD~dEl~~~~~~~~~w~~i~~~~ 406 (928)
T PRK08074 329 LQKIFPF--PVEAALLKGRSHYLCLRKFEQALQEEDDNYDVALTKAQLLVWLTETETGDLDELNLPSGGKLLWNRIASDG 406 (928)
T ss_pred HHHHcCC--CceEEEEEcccccccHHHHHHHHhccCCCHHHHHHHHHHHHHHccCCCCCHHHccCCCCCcchHHHhhccC
Confidence 3333211 35555555443200 0
Q ss_pred -----------------HHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCccc
Q 013858 238 -----------------QRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRML 282 (435)
Q Consensus 238 -----------------~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~ 282 (435)
..+.-...++|+|+.-..|+..+..+...+..++++||||||++.
T Consensus 407 ~~c~~~~cp~~~~Cf~~~ar~~a~~AdivItNHalLl~dl~~~~~ilp~~~~lViDEAH~l~ 468 (928)
T PRK08074 407 ESDGGKQSPWFSRCFYQRAKNRAKFADLVITNHALLLTDLTSEEPLLPSYEHIIIDEAHHFE 468 (928)
T ss_pred cccCCCCCCcccccHHHHHHHHHhcCCEEEECHHHHHHHHhhhcccCCCCCeEEEECCchHH
Confidence 000001245799999888877764444456789999999999865
No 134
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.45 E-value=4e-11 Score=115.03 Aligned_cols=121 Identities=21% Similarity=0.165 Sum_probs=87.4
Q ss_pred CCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEE
Q 013858 300 KHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIV 379 (435)
Q Consensus 300 ~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lV 379 (435)
..|+|.+|||+.+.-.... ...+.-.+-++.... ...+..-+....++.|+..+++....+ .++||
T Consensus 386 ~~q~i~VSATPg~~E~e~s----~~~vveQiIRPTGLl---DP~ievRp~~~QvdDL~~EI~~r~~~~-------eRvLV 451 (663)
T COG0556 386 IPQTIYVSATPGDYELEQS----GGNVVEQIIRPTGLL---DPEIEVRPTKGQVDDLLSEIRKRVAKN-------ERVLV 451 (663)
T ss_pred cCCEEEEECCCChHHHHhc----cCceeEEeecCCCCC---CCceeeecCCCcHHHHHHHHHHHHhcC-------CeEEE
Confidence 3689999999854322211 111222222222211 112222344556778888777766443 45999
Q ss_pred EeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 380 FVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 380 F~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
-+-|++.|+.|.++|.+.|+++..+|++...-+|.+++...+.|..+|||.-|.|
T Consensus 452 TtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLL 506 (663)
T COG0556 452 TTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLL 506 (663)
T ss_pred EeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhh
Confidence 9999999999999999999999999999999999999999999999999998876
No 135
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.43 E-value=1.8e-12 Score=129.03 Aligned_cols=155 Identities=18% Similarity=0.200 Sum_probs=107.0
Q ss_pred CCcHHHHHHHHHHh----cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHh
Q 013858 143 RPTSIQAQAMPVAL----SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (435)
Q Consensus 143 ~p~~~Q~~~i~~~~----~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~ 218 (435)
.+-+||...++|+. ++-+.|+..++|.|||.. +++.|.++...+. +|| .|||||...|- .|.++|.+|+
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQ-vIaFlayLkq~g~----~gp-HLVVvPsSTle-NWlrEf~kwC 471 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQ-VIAFLAYLKQIGN----PGP-HLVVVPSSTLE-NWLREFAKWC 471 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcchhH-HHHHHHHHHHcCC----CCC-cEEEecchhHH-HHHHHHHHhC
Confidence 37899999999976 445789999999999964 4777777776542 234 89999997764 4888888887
Q ss_pred hcCCCceEEEEECCCCHHHHHHHH-h---CCCcEEEECcHHHHHHHH-cCCCCCCCceEEEEecCCcccCCCCHHHHHHH
Q 013858 219 RSLDSFKTAIVVGGTNIAEQRSEL-R---GGVSIVVATPGRFLDHLQ-QGNTSLSRVSFVILDEADRMLDMGFEPQIREV 293 (435)
Q Consensus 219 ~~~~~~~~~~~~g~~~~~~~~~~~-~---~~~~I~v~T~~~l~~~l~-~~~~~l~~~~~iIiDEah~~~~~~~~~~i~~i 293 (435)
|.+++-.++|....+...+.. . ...+|+++|+.....--. +.-+.-.++.++|+||+|.+.|.. ..++..+
T Consensus 472 ---Psl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~-SeRy~~L 547 (941)
T KOG0389|consen 472 ---PSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRT-SERYKHL 547 (941)
T ss_pred ---CceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccc-hHHHHHh
Confidence 568899999887655444332 2 357999999966531100 001234568999999999887753 4455555
Q ss_pred HHhCCCCCeEEEEcccc
Q 013858 294 MQNLPDKHQTLLFSATM 310 (435)
Q Consensus 294 ~~~~~~~~q~i~~SATl 310 (435)
+..- . .+.|++|.|+
T Consensus 548 M~I~-A-n~RlLLTGTP 562 (941)
T KOG0389|consen 548 MSIN-A-NFRLLLTGTP 562 (941)
T ss_pred cccc-c-cceEEeeCCc
Confidence 4432 2 3357777774
No 136
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.43 E-value=2.1e-12 Score=133.93 Aligned_cols=256 Identities=20% Similarity=0.258 Sum_probs=170.7
Q ss_pred cHHHHHHHHHHhcC-CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcCCC
Q 013858 145 TSIQAQAMPVALSG-RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDS 223 (435)
Q Consensus 145 ~~~Q~~~i~~~~~~-~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~~~ 223 (435)
.++|.+.++.+.+. ++|++++|+|||||.++.++++. .....+++++.|.-+.+..+++.|.+-.....+
T Consensus 1145 n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~---------~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G 1215 (1674)
T KOG0951|consen 1145 NPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR---------PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLG 1215 (1674)
T ss_pred CCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC---------CccceEEEEecchHHHHHHHHHHHHHhhccccC
Confidence 88999999998854 56999999999999998877665 123578999999999999888888443333357
Q ss_pred ceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCC------CHHHHHHHHHhC
Q 013858 224 FKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG------FEPQIREVMQNL 297 (435)
Q Consensus 224 ~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~------~~~~i~~i~~~~ 297 (435)
+.++.+.|...... ++....+|+|+||+++... + ..+.+++.|.||+|.+.+.. ..+ ++.+...+
T Consensus 1216 ~~~~~l~ge~s~~l---kl~~~~~vii~tpe~~d~l-q----~iQ~v~l~i~d~lh~igg~~g~v~evi~S-~r~ia~q~ 1286 (1674)
T KOG0951|consen 1216 LRIVKLTGETSLDL---KLLQKGQVIISTPEQWDLL-Q----SIQQVDLFIVDELHLIGGVYGAVYEVICS-MRYIASQL 1286 (1674)
T ss_pred ceEEecCCccccch---HHhhhcceEEechhHHHHH-h----hhhhcceEeeehhhhhcccCCceEEEEee-HHHHHHHH
Confidence 88888888776543 2344569999999998544 2 46778999999999776422 112 55666666
Q ss_pred CCCCeEEEEcccccHHHHHHHHHHcC--CCeEEEeCCCCCCCCceEEEEEEcC---hhhHHH----HHHHHHHHHHHhhh
Q 013858 298 PDKHQTLLFSATMPVEIEALAQEYLT--DPVQVKVGKVSSPTANVIQILEKVS---ENEKVD----RLLALLVEEAFLAE 368 (435)
Q Consensus 298 ~~~~q~i~~SATl~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~i~~~~~~~~---~~~k~~----~l~~~l~~~~~~~~ 368 (435)
-++.+++.+|..+.. ++.+++ ..-.+++.....+.+ ....+.-+. -..... .....+..+.
T Consensus 1287 ~k~ir~v~ls~~lan-----a~d~ig~s~~~v~Nf~p~~R~~P-l~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a---- 1356 (1674)
T KOG0951|consen 1287 EKKIRVVALSSSLAN-----ARDLIGASSSGVFNFSPSVRPVP-LEIHIQSVDISHFESRMLAMTKPTYTAIVRHA---- 1356 (1674)
T ss_pred HhheeEEEeehhhcc-----chhhccccccceeecCcccCCCc-eeEEEEEeccchhHHHHHHhhhhHHHHHHHHh----
Confidence 677889999887742 222233 222223322222222 222222222 222222 2223333332
Q ss_pred ccCCCCCcEEEEeCchHHHHHHHHHHHhC----------------------CCcEEEecCCCCHHHHHHHHHHHHcCCCc
Q 013858 369 KSCHPFPLTIVFVERKTRCDEVSEALVAE----------------------GLHAVALHGGRNQSDRESALRDFRNGSTN 426 (435)
Q Consensus 369 ~~~~~~~~~lVF~~~~~~~~~l~~~L~~~----------------------~~~v~~lh~~~~~~~R~~~~~~f~~g~~~ 426 (435)
..+.+.+||+++++.|..++..|-.. .+.+.+=|-+++..++..+-..|..|.++
T Consensus 1357 ---~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~ 1433 (1674)
T KOG0951|consen 1357 ---GNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQ 1433 (1674)
T ss_pred ---cCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEE
Confidence 34557999999999998887665321 12233339999999999999999999999
Q ss_pred EEEEc
Q 013858 427 ILVFS 431 (435)
Q Consensus 427 VLVaT 431 (435)
|+|..
T Consensus 1434 v~v~s 1438 (1674)
T KOG0951|consen 1434 VCVMS 1438 (1674)
T ss_pred EEEEE
Confidence 98864
No 137
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.42 E-value=6.3e-13 Score=107.61 Aligned_cols=136 Identities=20% Similarity=0.229 Sum_probs=79.6
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHH
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIA 236 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~ 236 (435)
+|+-.++-..+|+|||.-.+.-++...... +.++||+.|||.++..+.+.++.. .+++....-+ .
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~-------~~rvLvL~PTRvva~em~~aL~~~-----~~~~~t~~~~---~ 67 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKR-------RLRVLVLAPTRVVAEEMYEALKGL-----PVRFHTNARM---R 67 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHT-------T--EEEEESSHHHHHHHHHHTTTS-----SEEEESTTSS----
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHc-------cCeEEEecccHHHHHHHHHHHhcC-----CcccCceeee---c
Confidence 355578899999999987533344444443 678999999999988876665432 2333211111 0
Q ss_pred HHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCC---CHHHHHHHHHhCCCCCeEEEEcccccHH
Q 013858 237 EQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG---FEPQIREVMQNLPDKHQTLLFSATMPVE 313 (435)
Q Consensus 237 ~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~---~~~~i~~i~~~~~~~~q~i~~SATl~~~ 313 (435)
....+.-|-+||.+.+.+.+.+ ...+.+|++||+||||.. |.. +.-.+ .-+... ..+++|.||||+|..
T Consensus 68 ----~~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~-Dp~sIA~rg~l-~~~~~~-g~~~~i~mTATPPG~ 139 (148)
T PF07652_consen 68 ----THFGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFT-DPTSIAARGYL-RELAES-GEAKVIFMTATPPGS 139 (148)
T ss_dssp -------SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT---SHHHHHHHHHH-HHHHHT-TS-EEEEEESS-TT-
T ss_pred ----cccCCCcccccccHHHHHHhcC-cccccCccEEEEeccccC-CHHHHhhheeH-HHhhhc-cCeeEEEEeCCCCCC
Confidence 1224457899999999888877 556889999999999963 211 11111 112222 346799999999865
Q ss_pred HH
Q 013858 314 IE 315 (435)
Q Consensus 314 ~~ 315 (435)
..
T Consensus 140 ~~ 141 (148)
T PF07652_consen 140 ED 141 (148)
T ss_dssp --
T ss_pred CC
Confidence 43
No 138
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.40 E-value=1.2e-10 Score=120.15 Aligned_cols=79 Identities=23% Similarity=0.293 Sum_probs=69.3
Q ss_pred hhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEE
Q 013858 349 ENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNIL 428 (435)
Q Consensus 349 ~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VL 428 (435)
...++..+++.+.+.. ..+.++||||++++.++.|++.|...|+.+..+||++++.+|.++++.|+.|+..||
T Consensus 424 ~~~qi~~Ll~eI~~~~-------~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VL 496 (655)
T TIGR00631 424 TDGQVDDLLSEIRQRV-------ARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVL 496 (655)
T ss_pred ccchHHHHHHHHHHHH-------cCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEE
Confidence 3456667777776654 334569999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCC
Q 013858 429 VFSYKL 434 (435)
Q Consensus 429 VaT~~L 434 (435)
|||++|
T Consensus 497 V~t~~L 502 (655)
T TIGR00631 497 VGINLL 502 (655)
T ss_pred EEcChh
Confidence 999976
No 139
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.39 E-value=4.8e-11 Score=113.22 Aligned_cols=263 Identities=16% Similarity=0.203 Sum_probs=161.4
Q ss_pred CCCcHHHHHHHHHHh-cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhc
Q 013858 142 TRPTSIQAQAMPVAL-SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRS 220 (435)
Q Consensus 142 ~~p~~~Q~~~i~~~~-~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~ 220 (435)
..+.|+|++.+...+ +|-.+++..++|.|||..+ +.+-.+.... +| .||+||. .+--.|++.+..|...
T Consensus 197 s~LlPFQreGv~faL~RgGR~llADeMGLGKTiQA-laIA~yyraE-------wp-lliVcPA-svrftWa~al~r~lps 266 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALERGGRILLADEMGLGKTIQA-LAIARYYRAE-------WP-LLIVCPA-SVRFTWAKALNRFLPS 266 (689)
T ss_pred HhhCchhhhhHHHHHhcCCeEEEecccccchHHHH-HHHHHHHhhc-------Cc-EEEEecH-HHhHHHHHHHHHhccc
Confidence 456899999998876 5678999999999999876 3333333332 23 8999998 4556699999888765
Q ss_pred CCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCCCHHHHHHHHHhCCCC
Q 013858 221 LDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDK 300 (435)
Q Consensus 221 ~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~ 300 (435)
... +.++.++..... .+.....|.|.+++++..+.. .+.-.++.+||+||.|.+.+.. -.....++..+...
T Consensus 267 ~~p--i~vv~~~~D~~~---~~~t~~~v~ivSye~ls~l~~--~l~~~~~~vvI~DEsH~Lk~sk-tkr~Ka~~dllk~a 338 (689)
T KOG1000|consen 267 IHP--IFVVDKSSDPLP---DVCTSNTVAIVSYEQLSLLHD--ILKKEKYRVVIFDESHMLKDSK-TKRTKAATDLLKVA 338 (689)
T ss_pred ccc--eEEEecccCCcc---ccccCCeEEEEEHHHHHHHHH--HHhcccceEEEEechhhhhccc-hhhhhhhhhHHHHh
Confidence 433 334444432211 122335799999998865543 2344569999999999775542 22333333333334
Q ss_pred CeEEEEcccc----cH---------------HHHHHHHHHcC-CCeEEEeCCC--------------------------C
Q 013858 301 HQTLLFSATM----PV---------------EIEALAQEYLT-DPVQVKVGKV--------------------------S 334 (435)
Q Consensus 301 ~q~i~~SATl----~~---------------~~~~~~~~~~~-~~~~i~~~~~--------------------------~ 334 (435)
..+|++|.|+ |. ..-++..+|.. ..+.+-.+.. .
T Consensus 339 khvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~ 418 (689)
T KOG1000|consen 339 KHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLK 418 (689)
T ss_pred hheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4589999996 22 22233344432 1222222111 1
Q ss_pred CCCCceEEEEEEcC---hhhHH--------------------HHHHHHH-----------HHHHHhh-hccCCCCCcEEE
Q 013858 335 SPTANVIQILEKVS---ENEKV--------------------DRLLALL-----------VEEAFLA-EKSCHPFPLTIV 379 (435)
Q Consensus 335 ~~~~~i~~~~~~~~---~~~k~--------------------~~l~~~l-----------~~~~~~~-~~~~~~~~~~lV 379 (435)
..++. ++.++.+. ..... ..++..+ .++...+ -....++.++||
T Consensus 419 qLPpK-rr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflV 497 (689)
T KOG1000|consen 419 QLPPK-RREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLV 497 (689)
T ss_pred hCCcc-ceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEE
Confidence 11222 33333321 01111 1111111 1111110 013356788999
Q ss_pred EeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcC
Q 013858 380 FVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNG 423 (435)
Q Consensus 380 F~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g 423 (435)
||.-..-.+.+...+.+++++..-+.|..+..+|....+.|+..
T Consensus 498 FaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~s 541 (689)
T KOG1000|consen 498 FAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTS 541 (689)
T ss_pred EehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999865
No 140
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.37 E-value=1.5e-10 Score=118.09 Aligned_cols=160 Identities=18% Similarity=0.193 Sum_probs=111.5
Q ss_pred CCcHHHHHHHHHHhc---C------C-CEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHH
Q 013858 143 RPTSIQAQAMPVALS---G------R-DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEK 212 (435)
Q Consensus 143 ~p~~~Q~~~i~~~~~---~------~-~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~ 212 (435)
.++|+|++++.-+.. | - .+|+.-.+|+|||+.. ++.+.-++.+.+...+.-.++|||+|. .|+..|++
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~-IsflwtlLrq~P~~~~~~~k~lVV~P~-sLv~nWkk 315 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQC-ISFIWTLLRQFPQAKPLINKPLVVAPS-SLVNNWKK 315 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHH-HHHHHHHHHhCcCccccccccEEEccH-HHHHHHHH
Confidence 359999999987762 2 2 3888899999999974 666666666654433334679999998 78899999
Q ss_pred HHHHHhhcCCCceEEEEECCCCH--HHHHHHH-----hCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCC
Q 013858 213 EVKALSRSLDSFKTAIVVGGTNI--AEQRSEL-----RGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG 285 (435)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~-----~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~ 285 (435)
+|.++... ..+....++++... ......+ .-..-|++.+++.+.+... .+.+..++++|+||.|++-|.
T Consensus 316 EF~KWl~~-~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~--~il~~~~glLVcDEGHrlkN~- 391 (776)
T KOG0390|consen 316 EFGKWLGN-HRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCR--KILLIRPGLLVCDEGHRLKNS- 391 (776)
T ss_pred HHHHhccc-cccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHH--HHhcCCCCeEEECCCCCccch-
Confidence 99998754 25667777776653 1111111 1123588888888876654 355678999999999988775
Q ss_pred CHHHHHHHHHhCCCCCeEEEEcccc
Q 013858 286 FEPQIREVMQNLPDKHQTLLFSATM 310 (435)
Q Consensus 286 ~~~~i~~i~~~~~~~~q~i~~SATl 310 (435)
...+.+.+..+.-++ .|++|.|+
T Consensus 392 -~s~~~kaL~~l~t~r-RVLLSGTp 414 (776)
T KOG0390|consen 392 -DSLTLKALSSLKTPR-RVLLTGTP 414 (776)
T ss_pred -hhHHHHHHHhcCCCc-eEEeeCCc
Confidence 345556666665444 47888886
No 141
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.36 E-value=2.6e-10 Score=108.33 Aligned_cols=128 Identities=26% Similarity=0.264 Sum_probs=87.8
Q ss_pred CCCcHHHHHHHHHHhcCC-----CEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHH
Q 013858 142 TRPTSIQAQAMPVALSGR-----DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 216 (435)
Q Consensus 142 ~~p~~~Q~~~i~~~~~~~-----~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~ 216 (435)
..+-|+|++.+.++.... ..|+..++|.|||... +.++.... .+...||++|+.+| .||.+++..
T Consensus 183 i~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQt-IaLllae~--------~ra~tLVvaP~VAl-mQW~nEI~~ 252 (791)
T KOG1002|consen 183 IPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQT-IALLLAEV--------DRAPTLVVAPTVAL-MQWKNEIER 252 (791)
T ss_pred ecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHH-HHHHHhcc--------ccCCeeEEccHHHH-HHHHHHHHH
Confidence 356899999999987542 4789999999999764 44443321 23459999999665 789999988
Q ss_pred HhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCC-------------CCC--CceEEEEecCCcc
Q 013858 217 LSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNT-------------SLS--RVSFVILDEADRM 281 (435)
Q Consensus 217 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~-------------~l~--~~~~iIiDEah~~ 281 (435)
+... .+++-+.+|.. .......+ .+.+++.+|+..+-....+.+. .|. ++.-||+||||.+
T Consensus 253 ~T~g--slkv~~YhG~~-R~~nikel-~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~I 328 (791)
T KOG1002|consen 253 HTSG--SLKVYIYHGAK-RDKNIKEL-MNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNI 328 (791)
T ss_pred hccC--ceEEEEEeccc-ccCCHHHh-hcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhccc
Confidence 8753 46666555543 33333333 3589999999999776654221 122 3456999999976
Q ss_pred cC
Q 013858 282 LD 283 (435)
Q Consensus 282 ~~ 283 (435)
.+
T Consensus 329 K~ 330 (791)
T KOG1002|consen 329 KD 330 (791)
T ss_pred cc
Confidence 54
No 142
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.35 E-value=1.7e-11 Score=124.50 Aligned_cols=74 Identities=22% Similarity=0.219 Sum_probs=57.0
Q ss_pred HHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHh-hcC-CCceEEEEE
Q 013858 153 PVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS-RSL-DSFKTAIVV 230 (435)
Q Consensus 153 ~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~-~~~-~~~~~~~~~ 230 (435)
..+.+++.+++.++||+|||++|++|++.++... .+.++||++||++|+.|+.+.+..+. +.+ ..+++..+.
T Consensus 11 ~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~------~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~~~~lk 84 (636)
T TIGR03117 11 TSLRQKRIGMLEASTGVGKTLAMIMAALTMLKER------PDQKIAIAVPTLALMGQLWSELERLTAEGLAGPVQAGFFP 84 (636)
T ss_pred HHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhc------cCceEEEECCcHHHHHHHHHHHHHHHHhhcCCCeeEEEEE
Confidence 3344677899999999999999999999886532 15789999999999999999888887 322 145555554
Q ss_pred CC
Q 013858 231 GG 232 (435)
Q Consensus 231 g~ 232 (435)
|+
T Consensus 85 Gr 86 (636)
T TIGR03117 85 GS 86 (636)
T ss_pred CC
Confidence 43
No 143
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.33 E-value=1.4e-11 Score=116.79 Aligned_cols=156 Identities=21% Similarity=0.224 Sum_probs=91.9
Q ss_pred HHHHHHHHHh-------------cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHH
Q 013858 147 IQAQAMPVAL-------------SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKE 213 (435)
Q Consensus 147 ~Q~~~i~~~~-------------~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~ 213 (435)
+|.+++.+++ ..+.++++.++|+|||... +.++..+....... ....+||++|. .+..+|..+
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~-i~~~~~l~~~~~~~--~~~~~LIv~P~-~l~~~W~~E 76 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITA-IALISYLKNEFPQR--GEKKTLIVVPS-SLLSQWKEE 76 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHH-HHHHHHHHHCCTTS--S-S-EEEEE-T-TTHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhh-hhhhhhhhhccccc--cccceeEeecc-chhhhhhhh
Confidence 5777777764 2346999999999999875 45555544432110 11249999999 888999999
Q ss_pred HHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHc---CCCCCCCceEEEEecCCcccCCCCHHHH
Q 013858 214 VKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQ---GNTSLSRVSFVILDEADRMLDMGFEPQI 290 (435)
Q Consensus 214 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~---~~~~l~~~~~iIiDEah~~~~~~~~~~i 290 (435)
+.++.... .+++..+.|...............+++|+|++.+...... ..+.-.++++||+||+|++.+. ....
T Consensus 77 ~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~--~s~~ 153 (299)
T PF00176_consen 77 IEKWFDPD-SLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNK--DSKR 153 (299)
T ss_dssp HHHHSGT--TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTT--TSHH
T ss_pred hccccccc-cccccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEecccccccc--cccc
Confidence 99988542 4555555554412222222345678999999999711000 0111235899999999988544 3344
Q ss_pred HHHHHhCCCCCeEEEEcccc
Q 013858 291 REVMQNLPDKHQTLLFSATM 310 (435)
Q Consensus 291 ~~i~~~~~~~~q~i~~SATl 310 (435)
...+..+. ....+++|||+
T Consensus 154 ~~~l~~l~-~~~~~lLSgTP 172 (299)
T PF00176_consen 154 YKALRKLR-ARYRWLLSGTP 172 (299)
T ss_dssp HHHHHCCC-ECEEEEE-SS-
T ss_pred cccccccc-cceEEeecccc
Confidence 44444455 45578999997
No 144
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.31 E-value=6.6e-10 Score=107.60 Aligned_cols=184 Identities=20% Similarity=0.248 Sum_probs=138.0
Q ss_pred CCcEEEECcHHHHHHHHc------CCCCCCCceEEEEecCCc--ccCCCCHHHHHHHHHhCCC-----------------
Q 013858 245 GVSIVVATPGRFLDHLQQ------GNTSLSRVSFVILDEADR--MLDMGFEPQIREVMQNLPD----------------- 299 (435)
Q Consensus 245 ~~~I~v~T~~~l~~~l~~------~~~~l~~~~~iIiDEah~--~~~~~~~~~i~~i~~~~~~----------------- 299 (435)
.+||+||+|=-|...+.. ..-.|+.+.++|||.||- |-||.....+.+.+...|+
T Consensus 131 ~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~~~~~DfsRVR~w~Ldg 210 (442)
T PF06862_consen 131 SSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKKSHDTDFSRVRPWYLDG 210 (442)
T ss_pred cCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHcC
Confidence 468999999888776663 123488899999999994 4455555555555555553
Q ss_pred ----CCeEEEEcccccHHHHHHHHHHcCCC---eEEEeCC-----CCCCCCceEEEEEEcC-------hhhHHHHHHHHH
Q 013858 300 ----KHQTLLFSATMPVEIEALAQEYLTDP---VQVKVGK-----VSSPTANVIQILEKVS-------ENEKVDRLLALL 360 (435)
Q Consensus 300 ----~~q~i~~SATl~~~~~~~~~~~~~~~---~~i~~~~-----~~~~~~~i~~~~~~~~-------~~~k~~~l~~~l 360 (435)
-+|+|++|+...+++..+....+.|. +.+.... .......+.|.+..++ .+.++.+..+.+
T Consensus 211 ~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~i 290 (442)
T PF06862_consen 211 QAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKKI 290 (442)
T ss_pred cchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHHH
Confidence 16999999999999999998876653 2222222 2344567888888753 345666666655
Q ss_pred HHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcC
Q 013858 361 VEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSY 432 (435)
Q Consensus 361 ~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~ 432 (435)
...... ....+++|||+++--+--.|..+|++.++..+.+|-..++.+-.++-..|..|+.+||+-|-
T Consensus 291 LP~l~~----~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TE 358 (442)
T PF06862_consen 291 LPQLKR----DSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILLYTE 358 (442)
T ss_pred HHHhhh----ccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEh
Confidence 443331 14556799999999999999999999999999999999999999999999999999999884
No 145
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.25 E-value=9.8e-11 Score=112.81 Aligned_cols=285 Identities=11% Similarity=-0.004 Sum_probs=190.3
Q ss_pred HHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHH
Q 013858 134 KDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKE 213 (435)
Q Consensus 134 ~~l~~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~ 213 (435)
..++.+.-.....+|..++..+..|+++++.-.|.+||.++|++....+..... ....+++.|+.+++....+-
T Consensus 277 ~~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~------~s~~~~~~~~~~~~~~~~~~ 350 (1034)
T KOG4150|consen 277 SLLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCH------ATNSLLPSEMVEHLRNGSKG 350 (1034)
T ss_pred HHHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCc------ccceecchhHHHHhhccCCc
Confidence 445566667788999999999999999999999999999999888777655432 24578888998887765443
Q ss_pred HHHHhhcCCCc--eEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCC----CCceEEEEecCCcccC-CC-
Q 013858 214 VKALSRSLDSF--KTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSL----SRVSFVILDEADRMLD-MG- 285 (435)
Q Consensus 214 ~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l----~~~~~iIiDEah~~~~-~~- 285 (435)
+.-.....+.. .++-.+++..........+.+.+++++.|.+....+..+..+. -...++++||+|..+. .+
T Consensus 351 ~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~ 430 (1034)
T KOG4150|consen 351 QVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKA 430 (1034)
T ss_pred eEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhh
Confidence 32221111212 3344455555555566677889999999999876655444333 3456789999994332 22
Q ss_pred -CHHHHHHHHHhC-----CCCCeEEEEcccccHHHHHHHHHHcCCCe-EEEeCCCCCCCCceEEEEEEcC---------h
Q 013858 286 -FEPQIREVMQNL-----PDKHQTLLFSATMPVEIEALAQEYLTDPV-QVKVGKVSSPTANVIQILEKVS---------E 349 (435)
Q Consensus 286 -~~~~i~~i~~~~-----~~~~q~i~~SATl~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~i~~~~~~~~---------~ 349 (435)
...+++.++..+ ....|++-.+||+...++.+...+.-+.+ .++.+. .+..-++.+.+.+ .
T Consensus 431 ~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DG---SPs~~K~~V~WNP~~~P~~~~~~ 507 (1034)
T KOG4150|consen 431 LAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDG---SPSSEKLFVLWNPSAPPTSKSEK 507 (1034)
T ss_pred HHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecC---CCCccceEEEeCCCCCCcchhhh
Confidence 112333333322 34789999999997777766555543333 333322 2223344444432 2
Q ss_pred hhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhC----C----CcEEEecCCCCHHHHHHHHHHHH
Q 013858 350 NEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE----G----LHAVALHGGRNQSDRESALRDFR 421 (435)
Q Consensus 350 ~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~----~----~~v~~lh~~~~~~~R~~~~~~f~ 421 (435)
+.++.....++.+.... +-++|.||..++-|+.+.+..++. + -.+..|.||...++|.++....-
T Consensus 508 ~~~i~E~s~~~~~~i~~-------~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F 580 (1034)
T KOG4150|consen 508 SSKVVEVSHLFAEMVQH-------GLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLF 580 (1034)
T ss_pred hhHHHHHHHHHHHHHHc-------CCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhh
Confidence 33444444455444422 235999999999999887766543 2 24678999999999999999999
Q ss_pred cCCCcEEEEcCCC
Q 013858 422 NGSTNILVFSYKL 434 (435)
Q Consensus 422 ~g~~~VLVaT~~L 434 (435)
.|+++-+||||+|
T Consensus 581 ~G~L~giIaTNAL 593 (1034)
T KOG4150|consen 581 GGKLCGIIATNAL 593 (1034)
T ss_pred CCeeeEEEecchh
Confidence 9999999999986
No 146
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.23 E-value=9.3e-10 Score=115.02 Aligned_cols=177 Identities=23% Similarity=0.187 Sum_probs=101.8
Q ss_pred HHHHHCCCCCCcHHHHHHHHHHhc--------CCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChh
Q 013858 134 KDIEFHEYTRPTSIQAQAMPVALS--------GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRE 205 (435)
Q Consensus 134 ~~l~~~~~~~p~~~Q~~~i~~~~~--------~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~ 205 (435)
+.+.+..-..-..||-.|+..+.. |-=+|-.|.||+|||++= .-++..+.. ...|.++.|-.-.|.
T Consensus 399 k~~~~r~~~~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aN-ARImyaLsd-----~~~g~RfsiALGLRT 472 (1110)
T TIGR02562 399 KYFCQRSAHPRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLAN-ARAMYALRD-----DKQGARFAIALGLRS 472 (1110)
T ss_pred hhhccCCCCCCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHH-HHHHHHhCC-----CCCCceEEEEccccc
Confidence 334444444567899999988763 223778899999999864 333333332 233567777777788
Q ss_pred hHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHH-------------------------------------------HHH
Q 013858 206 LAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQR-------------------------------------------SEL 242 (435)
Q Consensus 206 la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-------------------------------------------~~~ 242 (435)
|..|.-..+++-. .+.+-...+++|+....+-. ..+
T Consensus 473 LTLQTGda~r~rL-~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l 551 (1110)
T TIGR02562 473 LTLQTGHALKTRL-NLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRL 551 (1110)
T ss_pred eeccchHHHHHhc-CCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhh
Confidence 8777777665533 12223334444443211100 000
Q ss_pred h--------CCCcEEEECcHHHHHHHHc--C-CCCCC----CceEEEEecCCcccCCCCHHHHHHHHHhC-CCCCeEEEE
Q 013858 243 R--------GGVSIVVATPGRFLDHLQQ--G-NTSLS----RVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLF 306 (435)
Q Consensus 243 ~--------~~~~I~v~T~~~l~~~l~~--~-~~~l~----~~~~iIiDEah~~~~~~~~~~i~~i~~~~-~~~~q~i~~ 306 (435)
. -...|+|+|++.++..... . ...+. --+.|||||+|.. +..+...+..++.-+ .-..++++|
T Consensus 552 ~~~~k~~rll~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaY-D~~~~~~L~rlL~w~~~lG~~VlLm 630 (1110)
T TIGR02562 552 SLDDKEKTLLAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDY-EPEDLPALLRLVQLAGLLGSRVLLS 630 (1110)
T ss_pred ccChhhhhhhcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccC-CHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 0 0246999999999877632 1 11111 1368999999943 322333344443321 124569999
Q ss_pred cccccHHHHHHH
Q 013858 307 SATMPVEIEALA 318 (435)
Q Consensus 307 SATl~~~~~~~~ 318 (435)
|||+|+.+...+
T Consensus 631 SATLP~~l~~~L 642 (1110)
T TIGR02562 631 SATLPPALVKTL 642 (1110)
T ss_pred eCCCCHHHHHHH
Confidence 999999876543
No 147
>COG4889 Predicted helicase [General function prediction only]
Probab=99.22 E-value=1.8e-11 Score=123.06 Aligned_cols=148 Identities=20% Similarity=0.261 Sum_probs=101.8
Q ss_pred cccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC----CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEE
Q 013858 123 FTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSG----RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLAL 198 (435)
Q Consensus 123 ~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~----~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~l 198 (435)
|+.+.. .++..++.-..-..|+|+|++|+.+...| ...=+.+..|+|||++. +-+...+.. .++|
T Consensus 142 W~~f~p-~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTs-LkisEala~---------~~iL 210 (1518)
T COG4889 142 WDIFDP-TELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTS-LKISEALAA---------ARIL 210 (1518)
T ss_pred hhhcCc-cccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchH-HHHHHHHhh---------hheE
Confidence 444332 35556666667789999999999998854 22455566899999986 555555444 5799
Q ss_pred EEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHH-----------------------H--HHHhCCCcEEEECc
Q 013858 199 VLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQ-----------------------R--SELRGGVSIVVATP 253 (435)
Q Consensus 199 il~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-----------------------~--~~~~~~~~I~v~T~ 253 (435)
+++|+..|..|..+.+..-.. . +++...++.+...... . +.-..+--|+|+|+
T Consensus 211 ~LvPSIsLLsQTlrew~~~~~-l-~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTY 288 (1518)
T COG4889 211 FLVPSISLLSQTLREWTAQKE-L-DFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTY 288 (1518)
T ss_pred eecchHHHHHHHHHHHhhccC-c-cceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcc
Confidence 999999999999888865432 1 4566555554321110 0 01123456999999
Q ss_pred HHHHHHHHcCCCCCCCceEEEEecCCcccC
Q 013858 254 GRFLDHLQQGNTSLSRVSFVILDEADRMLD 283 (435)
Q Consensus 254 ~~l~~~l~~~~~~l~~~~~iIiDEah~~~~ 283 (435)
+.+...-.....-+..+++||.|||||...
T Consensus 289 QSl~~i~eAQe~G~~~fDliicDEAHRTtG 318 (1518)
T COG4889 289 QSLPRIKEAQEAGLDEFDLIICDEAHRTTG 318 (1518)
T ss_pred cchHHHHHHHHcCCCCccEEEecchhcccc
Confidence 999776555456688999999999998754
No 148
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.20 E-value=7.6e-11 Score=118.85 Aligned_cols=269 Identities=19% Similarity=0.201 Sum_probs=164.2
Q ss_pred HHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcCCCceEEEE
Q 013858 150 QAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIV 229 (435)
Q Consensus 150 ~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~ 229 (435)
..+..+..++.++|-++||+|||+.+.--+|..+..... .-...+.+..|||..+..+++++..-... ..+-.
T Consensus 385 ~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~---g~~~na~v~qprrisaisiaerva~er~e----~~g~t 457 (1282)
T KOG0921|consen 385 EILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSN---GASFNAVVSQPRRISAISLAERVANERGE----EVGET 457 (1282)
T ss_pred HHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccc---cccccceeccccccchHHHHHHHHHhhHH----hhccc
Confidence 334445566779999999999999877777777666431 11234677779999999888877443211 11222
Q ss_pred ECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCC-cccCCCCHHHHHHHHHhCCCCCeEEEEcc
Q 013858 230 VGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEAD-RMLDMGFEPQIREVMQNLPDKHQTLLFSA 308 (435)
Q Consensus 230 ~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah-~~~~~~~~~~i~~i~~~~~~~~q~i~~SA 308 (435)
+|.....+- ........|.++|-|.+++.+.. -+..++++|+||.| +-.+.+|.-.+..-+.....++.+++|||
T Consensus 458 vgy~vRf~S-a~prpyg~i~fctvgvllr~~e~---glrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~lmsa 533 (1282)
T KOG0921|consen 458 CGYNVRFDS-ATPRPYGSIMFCTVGVLLRMMEN---GLRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLMSA 533 (1282)
T ss_pred ccccccccc-cccccccceeeeccchhhhhhhh---cccccccccchhhhhhccchHHHHHHHHhhhccchhhhhhhhhc
Confidence 222211111 11122246999999999999876 35678999999999 66666666555554444455666777777
Q ss_pred cccHHHH--------------------HHHHHHcCCCeEEEeCCCCCCCCc---------eE---EEEEE----------
Q 013858 309 TMPVEIE--------------------ALAQEYLTDPVQVKVGKVSSPTAN---------VI---QILEK---------- 346 (435)
Q Consensus 309 Tl~~~~~--------------------~~~~~~~~~~~~i~~~~~~~~~~~---------i~---~~~~~---------- 346 (435)
|+..+.- .+...++..+.............. .. ..+..
T Consensus 534 tIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~ 613 (1282)
T KOG0921|consen 534 TIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNEST 613 (1282)
T ss_pred ccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcchh
Confidence 7643321 111111111111111111100000 00 00000
Q ss_pred ------cChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhC-------CCcEEEecCCCCHHHH
Q 013858 347 ------VSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE-------GLHAVALHGGRNQSDR 413 (435)
Q Consensus 347 ------~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~-------~~~v~~lh~~~~~~~R 413 (435)
.........|.+.+...... ....+.++||.+..+.+-.|+.+|... .+.+..+|+.++..++
T Consensus 614 ~~am~~~se~d~~f~l~Eal~~~i~s----~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eq 689 (1282)
T KOG0921|consen 614 RTAMSRLSEKDIPFGLIEALLNDIAS----RNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQ 689 (1282)
T ss_pred hhhhhcchhhcchhHHHHHHHhhhcc----cCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhh
Confidence 01122233444444333322 155677999999999999999999653 3678999999999999
Q ss_pred HHHHHHHHcCCCcEEEEcCC
Q 013858 414 ESALRDFRNGSTNILVFSYK 433 (435)
Q Consensus 414 ~~~~~~f~~g~~~VLVaT~~ 433 (435)
.++++....|..+++++|++
T Consensus 690 rkvf~~~p~gv~kii~stni 709 (1282)
T KOG0921|consen 690 RKVFEPVPEGVTKIILSTNI 709 (1282)
T ss_pred hhccCcccccccccccccce
Confidence 99999999999999999986
No 149
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.20 E-value=3.3e-09 Score=110.19 Aligned_cols=78 Identities=23% Similarity=0.277 Sum_probs=68.2
Q ss_pred hhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEE
Q 013858 350 NEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILV 429 (435)
Q Consensus 350 ~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLV 429 (435)
..++..+++.+..... .+.++||||+++..++.|++.|...|+.+..+||++++.+|..+++.|+.|+..|||
T Consensus 429 ~~q~~~L~~~L~~~~~-------~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV 501 (652)
T PRK05298 429 KGQVDDLLSEIRKRVA-------KGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLV 501 (652)
T ss_pred cccHHHHHHHHHHHHh-------CCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEE
Confidence 3456677777766542 345699999999999999999999999999999999999999999999999999999
Q ss_pred EcCCC
Q 013858 430 FSYKL 434 (435)
Q Consensus 430 aT~~L 434 (435)
||++|
T Consensus 502 ~t~~L 506 (652)
T PRK05298 502 GINLL 506 (652)
T ss_pred EeCHH
Confidence 99976
No 150
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.17 E-value=2.3e-10 Score=116.90 Aligned_cols=129 Identities=20% Similarity=0.307 Sum_probs=90.9
Q ss_pred CCcHHHHHHHHHHh---cC-CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHh
Q 013858 143 RPTSIQAQAMPVAL---SG-RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (435)
Q Consensus 143 ~p~~~Q~~~i~~~~---~~-~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~ 218 (435)
.+.+||...+.|+. +| -+.|+..+||.|||.. .+.++.+++..... .|| .|||+|+..|.+ |..+|..++
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQ-tIsLitYLmE~K~~---~GP-~LvivPlstL~N-W~~Ef~kWa 467 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQ-TISLITYLMEHKQM---QGP-FLIIVPLSTLVN-WSSEFPKWA 467 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHH-HHHHHHHHHHHccc---CCC-eEEeccccccCC-chhhccccc
Confidence 67889999999876 33 3799999999999965 57888887775432 345 789999988876 888888876
Q ss_pred hcCCCceEEEEECCCCHHHH--HHHHhCCCcEEEECcHHHHHHHHcCCCCCC--CceEEEEecCCcccCC
Q 013858 219 RSLDSFKTAIVVGGTNIAEQ--RSELRGGVSIVVATPGRFLDHLQQGNTSLS--RVSFVILDEADRMLDM 284 (435)
Q Consensus 219 ~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~--~~~~iIiDEah~~~~~ 284 (435)
. .+..+...|....+.. ........+|+++|++.+.+ ..-.|. ++.++||||.|||.+.
T Consensus 468 P---Sv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik----dk~lLsKI~W~yMIIDEGHRmKNa 530 (1157)
T KOG0386|consen 468 P---SVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK----DKALLSKISWKYMIIDEGHRMKNA 530 (1157)
T ss_pred c---ceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC----CHHHHhccCCcceeecccccccch
Confidence 3 4555555554333221 12233668999999976643 222233 5779999999999763
No 151
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.17 E-value=3.8e-09 Score=108.87 Aligned_cols=137 Identities=18% Similarity=0.196 Sum_probs=91.4
Q ss_pred EEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHH
Q 013858 162 LGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSE 241 (435)
Q Consensus 162 ii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 241 (435)
+..+-+|||||.+| +.++...+.. |.++||++|...|+.|+.+++++.+. +..+..++++....+....
T Consensus 164 i~~~~~GSGKTevy-l~~i~~~l~~-------Gk~vLvLvPEi~lt~q~~~rl~~~f~---~~~v~~lhS~l~~~~R~~~ 232 (665)
T PRK14873 164 VWQALPGEDWARRL-AAAAAATLRA-------GRGALVVVPDQRDVDRLEAALRALLG---AGDVAVLSAGLGPADRYRR 232 (665)
T ss_pred HhhcCCCCcHHHHH-HHHHHHHHHc-------CCeEEEEecchhhHHHHHHHHHHHcC---CCcEEEECCCCCHHHHHHH
Confidence 33344699999998 5566655553 67899999999999999999977652 2457777777765543322
Q ss_pred ----HhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCc-ccCCC----CHHHHHHHHHhCCCCCeEEEEcccccH
Q 013858 242 ----LRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADR-MLDMG----FEPQIREVMQNLPDKHQTLLFSATMPV 312 (435)
Q Consensus 242 ----~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~-~~~~~----~~~~i~~i~~~~~~~~q~i~~SATl~~ 312 (435)
..+..+|+|+|-..+ -..+.++++|||||-|- ..... +...-..++.....++.+|+.|||++-
T Consensus 233 w~~~~~G~~~IViGtRSAv-------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSl 305 (665)
T PRK14873 233 WLAVLRGQARVVVGTRSAV-------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTA 305 (665)
T ss_pred HHHHhCCCCcEEEEcceeE-------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCH
Confidence 245579999995333 23578999999999992 22222 222222222223356789999999965
Q ss_pred HHHH
Q 013858 313 EIEA 316 (435)
Q Consensus 313 ~~~~ 316 (435)
+...
T Consensus 306 es~~ 309 (665)
T PRK14873 306 EAQA 309 (665)
T ss_pred HHHH
Confidence 5543
No 152
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.15 E-value=7.1e-10 Score=103.81 Aligned_cols=73 Identities=19% Similarity=0.100 Sum_probs=56.4
Q ss_pred CCcHHHHHHHHH----HhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHH
Q 013858 143 RPTSIQAQAMPV----ALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (435)
Q Consensus 143 ~p~~~Q~~~i~~----~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~ 217 (435)
.|+|.|.+.+.. +..|.++++.+|||+|||+++++|++.++...... ..+.+++|.++|..+..|....++++
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~--~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER--IQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc--ccccceeEEeccHHHHHHHHHHHHhc
Confidence 369999996555 44788999999999999999999999886653210 01347999999999888877777654
No 153
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.15 E-value=7.1e-10 Score=103.81 Aligned_cols=73 Identities=19% Similarity=0.100 Sum_probs=56.4
Q ss_pred CCcHHHHHHHHH----HhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHH
Q 013858 143 RPTSIQAQAMPV----ALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (435)
Q Consensus 143 ~p~~~Q~~~i~~----~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~ 217 (435)
.|+|.|.+.+.. +..|.++++.+|||+|||+++++|++.++...... ..+.+++|.++|..+..|....++++
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~--~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER--IQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc--ccccceeEEeccHHHHHHHHHHHHhc
Confidence 369999996555 44788999999999999999999999886653210 01347999999999888877777654
No 154
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.14 E-value=5.7e-09 Score=106.52 Aligned_cols=246 Identities=14% Similarity=0.136 Sum_probs=150.0
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHH
Q 013858 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAE 237 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 237 (435)
....++.+|+|||||++. +..+...+.. ...++|++..++.|+.+...+++..+-. ++..-.-.++....
T Consensus 49 ~~V~vVRSpMGTGKTtaL-i~wLk~~l~~------~~~~VLvVShRrSL~~sL~~rf~~~~l~--gFv~Y~d~~~~~i~- 118 (824)
T PF02399_consen 49 RGVLVVRSPMGTGKTTAL-IRWLKDALKN------PDKSVLVVSHRRSLTKSLAERFKKAGLS--GFVNYLDSDDYIID- 118 (824)
T ss_pred CCeEEEECCCCCCcHHHH-HHHHHHhccC------CCCeEEEEEhHHHHHHHHHHHHhhcCCC--cceeeecccccccc-
Confidence 345899999999999764 5555443321 2567999999999999998888765321 22211111111000
Q ss_pred HHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCCCH-------HHHHHHHHhCCCCCeEEEEcccc
Q 013858 238 QRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFE-------PQIREVMQNLPDKHQTLLFSATM 310 (435)
Q Consensus 238 ~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~~~-------~~i~~i~~~~~~~~q~i~~SATl 310 (435)
....+-+++..+.|.+.. ...+.++++|||||+-..++.=|. ..+..+...+.....+|+|-|++
T Consensus 119 -----~~~~~rLivqIdSL~R~~---~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~l 190 (824)
T PF02399_consen 119 -----GRPYDRLIVQIDSLHRLD---GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADL 190 (824)
T ss_pred -----ccccCeEEEEehhhhhcc---cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCC
Confidence 012466777777776553 234678999999999855543221 12222333345556799999999
Q ss_pred cHHHHHHHHHHcC-CCeEEEeCCCCCCCCceEEEEEEc-----------C-----------------------hhhHHHH
Q 013858 311 PVEIEALAQEYLT-DPVQVKVGKVSSPTANVIQILEKV-----------S-----------------------ENEKVDR 355 (435)
Q Consensus 311 ~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~i~~~~~~~-----------~-----------------------~~~k~~~ 355 (435)
....-++++.+.. .++.+.++.-..+...-++....- . .......
T Consensus 191 n~~tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 270 (824)
T PF02399_consen 191 NDQTVDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETT 270 (824)
T ss_pred CHHHHHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhh
Confidence 9998888888754 345554443222222222211110 0 0001112
Q ss_pred HHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 356 LLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 356 l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
....+.... ..+.++-||+.+...++.++++.+..+..|..++|+.+..+. +. -++.+|++-|.++
T Consensus 271 F~~~L~~~L-------~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~--W~~~~VviYT~~i 336 (824)
T PF02399_consen 271 FFSELLARL-------NAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ES--WKKYDVVIYTPVI 336 (824)
T ss_pred HHHHHHHHH-------hCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----cc--ccceeEEEEeceE
Confidence 233333322 234458899999999999999999888999999998776522 21 5678999988764
No 155
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.09 E-value=8.3e-10 Score=106.46 Aligned_cols=222 Identities=18% Similarity=0.140 Sum_probs=142.3
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHH
Q 013858 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAE 237 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 237 (435)
.+-++=+|||.||||.-+ ++++.. ....++--|.|-||..+++++++. ++.+.+++|......
T Consensus 191 RkIi~H~GPTNSGKTy~A----Lqrl~~--------aksGvycGPLrLLA~EV~~r~na~-----gipCdL~TGeE~~~~ 253 (700)
T KOG0953|consen 191 RKIIMHVGPTNSGKTYRA----LQRLKS--------AKSGVYCGPLRLLAHEVYDRLNAL-----GIPCDLLTGEERRFV 253 (700)
T ss_pred heEEEEeCCCCCchhHHH----HHHHhh--------hccceecchHHHHHHHHHHHhhhc-----CCCccccccceeeec
Confidence 345778999999999754 455444 245788889999999999999886 466667776654332
Q ss_pred HHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCCCHHHHHHHHHhCCC-CCeEEEEcccccHHHHH
Q 013858 238 QRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPD-KHQTLLFSATMPVEIEA 316 (435)
Q Consensus 238 ~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~-~~q~i~~SATl~~~~~~ 316 (435)
... .+.+..+=+|.+++ . .-..|++.||||++.|-+...+..|-+.+--+.. ..-+.+ .+.+-.
T Consensus 254 ~~~--~~~a~hvScTVEM~-------s-v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCG-----epsvld 318 (700)
T KOG0953|consen 254 LDN--GNPAQHVSCTVEMV-------S-VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCG-----EPSVLD 318 (700)
T ss_pred CCC--CCcccceEEEEEEe-------e-cCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccC-----CchHHH
Confidence 211 12356777787655 1 2346899999999999888777777665443322 111111 123333
Q ss_pred HHHHHc---CCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHH
Q 013858 317 LAQEYL---TDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEA 393 (435)
Q Consensus 317 ~~~~~~---~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~ 393 (435)
+++..+ ++.+.++.-. ....-.-.+.++.-+.. ..+|-+ |.|-+++.+-.+...
T Consensus 319 lV~~i~k~TGd~vev~~Ye-------------Rl~pL~v~~~~~~sl~n---------lk~GDC-vV~FSkk~I~~~k~k 375 (700)
T KOG0953|consen 319 LVRKILKMTGDDVEVREYE-------------RLSPLVVEETALGSLSN---------LKPGDC-VVAFSKKDIFTVKKK 375 (700)
T ss_pred HHHHHHhhcCCeeEEEeec-------------ccCcceehhhhhhhhcc---------CCCCCe-EEEeehhhHHHHHHH
Confidence 444443 3334433211 11111011122222211 122223 456778899999999
Q ss_pred HHhCCCc-EEEecCCCCHHHHHHHHHHHHc--CCCcEEEEcCCC
Q 013858 394 LVAEGLH-AVALHGGRNQSDRESALRDFRN--GSTNILVFSYKL 434 (435)
Q Consensus 394 L~~~~~~-v~~lh~~~~~~~R~~~~~~f~~--g~~~VLVaT~~L 434 (435)
+.+.|.. |++++|+++++.|.+--..|.+ ++++||||||++
T Consensus 376 IE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAI 419 (700)
T KOG0953|consen 376 IEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAI 419 (700)
T ss_pred HHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccc
Confidence 9888765 9999999999999999999987 899999999975
No 156
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.08 E-value=1.8e-09 Score=106.63 Aligned_cols=137 Identities=24% Similarity=0.254 Sum_probs=85.4
Q ss_pred CCcHHHHHHHHHHhc-----CCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCC---CCCCeEEEEccChhhHHHHHHHH
Q 013858 143 RPTSIQAQAMPVALS-----GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGR---GDGPLALVLAPTRELAQQIEKEV 214 (435)
Q Consensus 143 ~p~~~Q~~~i~~~~~-----~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~---~~~~~~lil~P~r~la~q~~~~~ 214 (435)
.+.|+|+.++.++.- +...|+...+|.|||+.. +.++.+-........ ......|||||- .|.-||..++
T Consensus 325 ~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsm-islil~qK~~~~~~~~~~~~a~~TLII~Pa-Sli~qW~~Ev 402 (901)
T KOG4439|consen 325 ELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSM-ISLILHQKAARKAREKKGESASKTLIICPA-SLIHQWEAEV 402 (901)
T ss_pred ecchhhhhhhhhhcccccCCCCCcccccccccccchHH-HHHHHHHHHHHHhhcccccccCCeEEeCcH-HHHHHHHHHH
Confidence 468999999999872 345899999999999864 444332221111111 111248999997 6778899888
Q ss_pred HHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHH----HHHcCC--CCC--CCceEEEEecCCcccC
Q 013858 215 KALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLD----HLQQGN--TSL--SRVSFVILDEADRMLD 283 (435)
Q Consensus 215 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~----~l~~~~--~~l--~~~~~iIiDEah~~~~ 283 (435)
..-.... .+++.+.+ |.+.++........++|+|+|+..+.+ ....+. -.| -.++.||+||||.+-|
T Consensus 403 ~~rl~~n-~LsV~~~H-G~n~r~i~~~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN 477 (901)
T KOG4439|consen 403 ARRLEQN-ALSVYLYH-GPNKREISAKELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIRN 477 (901)
T ss_pred HHHHhhc-ceEEEEec-CCccccCCHHHHhhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhcc
Confidence 5554442 35555544 544344333444568999999977654 222111 112 2467899999997655
No 157
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=99.06 E-value=3.4e-09 Score=96.74 Aligned_cols=131 Identities=25% Similarity=0.343 Sum_probs=99.0
Q ss_pred CCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhh
Q 013858 140 EYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSR 219 (435)
Q Consensus 140 ~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~ 219 (435)
-..+|++.|..++-.+..|+ |+...||=|||++..+|+....+. |..+-|++.+..||..=++.+..+..
T Consensus 74 ~g~~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~--------G~~V~vvT~NdyLA~RD~~~~~~~y~ 143 (266)
T PF07517_consen 74 LGLRPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQ--------GKGVHVVTSNDYLAKRDAEEMRPFYE 143 (266)
T ss_dssp TS----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTT--------SS-EEEEESSHHHHHHHHHHHHHHHH
T ss_pred cCCcccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHh--------cCCcEEEeccHHHhhccHHHHHHHHH
Confidence 34689999999999887777 999999999999988887776655 67799999999999999999999998
Q ss_pred cCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHH-HHHHcC------CCCCCCceEEEEecCC-cccC
Q 013858 220 SLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFL-DHLQQG------NTSLSRVSFVILDEAD-RMLD 283 (435)
Q Consensus 220 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~-~~l~~~------~~~l~~~~~iIiDEah-~~~~ 283 (435)
.+ ++.+.++.++.........+. ++|+++|...+. +.+... ....+.+.++|||||| .+++
T Consensus 144 ~L-Glsv~~~~~~~~~~~r~~~Y~--~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~LiD 212 (266)
T PF07517_consen 144 FL-GLSVGIITSDMSSEERREAYA--ADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSILID 212 (266)
T ss_dssp HT-T--EEEEETTTEHHHHHHHHH--SSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHTTT
T ss_pred Hh-hhccccCccccCHHHHHHHHh--CcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEEEe
Confidence 87 799999999988766555555 689999998884 333321 1125679999999999 4445
No 158
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.95 E-value=2.6e-08 Score=104.06 Aligned_cols=128 Identities=21% Similarity=0.260 Sum_probs=90.4
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcCC
Q 013858 143 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 222 (435)
Q Consensus 143 ~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~~ 222 (435)
+|+++|..+=-.++.|+ |..+.||-|||+++.+|++...+. |..+-|++.+--||.-=++.+..+...+
T Consensus 169 ~~yDVQliGgivLh~G~--IAEM~TGEGKTLvAtlp~yLnAL~--------GkgVHvVTVNDYLA~RDaewmgply~fL- 237 (1112)
T PRK12901 169 VHYDVQLIGGVVLHQGK--IAEMATGEGKTLVATLPVYLNALT--------GNGVHVVTVNDYLAKRDSEWMGPLYEFH- 237 (1112)
T ss_pred cccchHHhhhhhhcCCc--eeeecCCCCchhHHHHHHHHHHHc--------CCCcEEEEechhhhhccHHHHHHHHHHh-
Confidence 56777777666666665 889999999999999999887666 4557777777788877777777777766
Q ss_pred CceEEEEEC-CCCHHHHHHHHhCCCcEEEECcHHH-HHHHHc------CCCCCCCceEEEEecCC-cccC
Q 013858 223 SFKTAIVVG-GTNIAEQRSELRGGVSIVVATPGRF-LDHLQQ------GNTSLSRVSFVILDEAD-RMLD 283 (435)
Q Consensus 223 ~~~~~~~~g-~~~~~~~~~~~~~~~~I~v~T~~~l-~~~l~~------~~~~l~~~~~iIiDEah-~~~~ 283 (435)
++.++++.. +....+.... -.|+|.++|..-| .+++.. .....+.+.+.||||+| -+++
T Consensus 238 GLsvg~i~~~~~~~~~rr~a--Y~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDSILID 305 (1112)
T PRK12901 238 GLSVDCIDKHQPNSEARRKA--YNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVLID 305 (1112)
T ss_pred CCceeecCCCCCCHHHHHHh--CCCcceecCCCccccccchhccccchHhhhCcCCceeEeechhhhhhc
Confidence 799998876 3344443333 3489999998665 222211 12235668899999999 4444
No 159
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=98.82 E-value=1.3e-08 Score=100.73 Aligned_cols=153 Identities=18% Similarity=0.234 Sum_probs=112.6
Q ss_pred CcHHHHHHHHHHh----cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhh
Q 013858 144 PTSIQAQAMPVAL----SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSR 219 (435)
Q Consensus 144 p~~~Q~~~i~~~~----~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~ 219 (435)
+..||...+.++. .|-+.|+..++|.|||... +.++.++.....+++ | .||++|...|- .|+.++.+|+
T Consensus 568 LKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQs-isvlAhLaE~~nIwG---P-FLVVtpaStL~-NWaqEisrFl- 640 (1185)
T KOG0388|consen 568 LKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQS-ISVLAHLAETHNIWG---P-FLVVTPASTLH-NWAQEISRFL- 640 (1185)
T ss_pred hHHHhhccHHHHHHHHHccccceehhhhccchhHHH-HHHHHHHHHhccCCC---c-eEEeehHHHHh-HHHHHHHHhC-
Confidence 4568999999876 5778999999999999775 788888888776653 3 88999987764 4777777765
Q ss_pred cCCCceEEEEECCCCHHHHHHHH---------hCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCCCHHHH
Q 013858 220 SLDSFKTAIVVGGTNIAEQRSEL---------RGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQI 290 (435)
Q Consensus 220 ~~~~~~~~~~~g~~~~~~~~~~~---------~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~~~~~i 290 (435)
|.+++.-.-|+...+...++. ..+.+|+|++++.+.-.-. .+.--++.|+|+|||+.+.. ....+|
T Consensus 641 --P~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDek--y~qkvKWQYMILDEAQAIKS-SsS~RW 715 (1185)
T KOG0388|consen 641 --PSFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDEK--YLQKVKWQYMILDEAQAIKS-SSSSRW 715 (1185)
T ss_pred --ccceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechHH--HHHhhhhhheehhHHHHhhh-hhhhHH
Confidence 578888888888766655552 3467999999988743221 12223688999999997643 356788
Q ss_pred HHHHHhCCCCCeEEEEcccc
Q 013858 291 REVMQNLPDKHQTLLFSATM 310 (435)
Q Consensus 291 ~~i~~~~~~~~q~i~~SATl 310 (435)
..++.....+ .+++|.|+
T Consensus 716 KtLLsF~cRN--RLLLTGTP 733 (1185)
T KOG0388|consen 716 KTLLSFKCRN--RLLLTGTP 733 (1185)
T ss_pred HHHhhhhccc--eeeecCCc
Confidence 8888764433 47888886
No 160
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.76 E-value=1.2e-06 Score=94.56 Aligned_cols=137 Identities=19% Similarity=0.233 Sum_probs=91.6
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHH
Q 013858 159 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQ 238 (435)
Q Consensus 159 ~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 238 (435)
+..+|+--||||||++. +.+-..+... +..|.+++|+.++.|-.|+.+.++.++.... ... ...+...-
T Consensus 274 ~~G~IWHtqGSGKTlTm-~~~A~~l~~~-----~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~--~~~---~~~s~~~L 342 (962)
T COG0610 274 KGGYIWHTQGSGKTLTM-FKLARLLLEL-----PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAF--NDP---KAESTSEL 342 (962)
T ss_pred CceEEEeecCCchHHHH-HHHHHHHHhc-----cCCCeEEEEechHHHHHHHHHHHHHHHHhhh--hcc---cccCHHHH
Confidence 45999999999999864 3333333332 3478999999999999999999999986532 111 34444555
Q ss_pred HHHHhCC-CcEEEECcHHHHHHHHcCC--CCCCCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEcccc
Q 013858 239 RSELRGG-VSIVVATPGRFLDHLQQGN--TSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATM 310 (435)
Q Consensus 239 ~~~~~~~-~~I~v~T~~~l~~~l~~~~--~~l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SATl 310 (435)
...+..+ ..|+|||.+.|-....... ..-++-=+||+|||||.-.......+ ...+++ ...++||.|+
T Consensus 343 k~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~G~~~~~~---~~~~~~-a~~~gFTGTP 413 (962)
T COG0610 343 KELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQYGELAKLL---KKALKK-AIFIGFTGTP 413 (962)
T ss_pred HHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhccccHHHHHH---HHHhcc-ceEEEeeCCc
Confidence 5555544 4899999999977765431 11233447899999987432222233 333333 5689999998
No 161
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.75 E-value=1.4e-07 Score=99.32 Aligned_cols=143 Identities=19% Similarity=0.253 Sum_probs=84.3
Q ss_pred CEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHH-----HHh-hcCCC--ceEEEEEC
Q 013858 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVK-----ALS-RSLDS--FKTAIVVG 231 (435)
Q Consensus 160 ~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~-----~~~-~~~~~--~~~~~~~g 231 (435)
++.+.++||+|||.+|+-.++.....++ ..+.||+||+.++-..+...+. ... ....+ +....+..
T Consensus 61 n~~~~M~TGtGKT~~~~~~i~~l~~~~~------~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S 134 (986)
T PRK15483 61 NIDIKMETGTGKTYVYTRLMYELHQKYG------LFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINA 134 (986)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHcC------CcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEec
Confidence 6899999999999998666655544432 3579999999888777765544 111 11122 33333332
Q ss_pred CC-------CHHHHHHHHh-------CCCcEEEECcHHHHHHHH-cCC---C-------C---CCCc-eEEEEecCCccc
Q 013858 232 GT-------NIAEQRSELR-------GGVSIVVATPGRFLDHLQ-QGN---T-------S---LSRV-SFVILDEADRML 282 (435)
Q Consensus 232 ~~-------~~~~~~~~~~-------~~~~I~v~T~~~l~~~l~-~~~---~-------~---l~~~-~~iIiDEah~~~ 282 (435)
+. .......... +...|+|+|.++|..... ... + . +... -+||+||.|++-
T Consensus 135 ~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~ 214 (986)
T PRK15483 135 GDKKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFP 214 (986)
T ss_pred CcccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCC
Confidence 21 1112211121 146899999999865322 111 0 0 1111 369999999874
Q ss_pred CCCCHHHHHHHHHhCCCCCeEEEEcccccH
Q 013858 283 DMGFEPQIREVMQNLPDKHQTLLFSATMPV 312 (435)
Q Consensus 283 ~~~~~~~i~~i~~~~~~~~q~i~~SATl~~ 312 (435)
.. ...|..| ..+.+.+ ++.+|||.+.
T Consensus 215 ~~--~k~~~~i-~~lnpl~-~lrysAT~~~ 240 (986)
T PRK15483 215 RD--NKFYQAI-EALKPQM-IIRFGATFPD 240 (986)
T ss_pred cc--hHHHHHH-HhcCccc-EEEEeeecCC
Confidence 32 2355555 4555555 6779999986
No 162
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.75 E-value=2.1e-07 Score=97.64 Aligned_cols=63 Identities=27% Similarity=0.256 Sum_probs=51.4
Q ss_pred CCCcHHHHHHHHHHh---cC------CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHH
Q 013858 142 TRPTSIQAQAMPVAL---SG------RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIE 211 (435)
Q Consensus 142 ~~p~~~Q~~~i~~~~---~~------~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~ 211 (435)
..+++-|.+.+..+. .+ +.++|.|+||+|||++|++|++.+.... +.+++|-+.|..|-.|+.
T Consensus 24 ~e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~~-------~k~vVIST~T~~LQeQL~ 95 (697)
T PRK11747 24 FIPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARAE-------KKKLVISTATVALQEQLV 95 (697)
T ss_pred CCcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHHc-------CCeEEEEcCCHHHHHHHH
Confidence 467999999776655 33 5699999999999999999998876543 567999999999988874
No 163
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=98.69 E-value=3e-07 Score=75.39 Aligned_cols=77 Identities=36% Similarity=0.543 Sum_probs=67.7
Q ss_pred hHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEE
Q 013858 351 EKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVF 430 (435)
Q Consensus 351 ~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVa 430 (435)
.|...+...+.+.. ...+++||||++...++.+++.|++.+.++..+||+++..+|..+++.|++|..+||++
T Consensus 12 ~k~~~i~~~i~~~~-------~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~ 84 (131)
T cd00079 12 EKLEALLELLKEHL-------KKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVA 84 (131)
T ss_pred HHHHHHHHHHHhcc-------cCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEE
Confidence 67777777766543 23567999999999999999999998999999999999999999999999999999999
Q ss_pred cCCC
Q 013858 431 SYKL 434 (435)
Q Consensus 431 T~~L 434 (435)
|+.+
T Consensus 85 t~~~ 88 (131)
T cd00079 85 TDVI 88 (131)
T ss_pred cChh
Confidence 9875
No 164
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.69 E-value=2e-07 Score=89.80 Aligned_cols=285 Identities=20% Similarity=0.255 Sum_probs=178.7
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEE-ccCCCch--hHHhHHHHHHHHHhcC--------C---------------CCCCCCC
Q 013858 142 TRPTSIQAQAMPVALSGRDLLGC-AETGSGK--TAAFTIPMIQHCVAQT--------P---------------VGRGDGP 195 (435)
Q Consensus 142 ~~p~~~Q~~~i~~~~~~~~vii~-~~TGsGK--T~~~~~~~l~~~~~~~--------~---------------~~~~~~~ 195 (435)
..+++.|.+.+..+.+-+|++.. +..|.|+ +-.|++.++.++++.. . -.+-..|
T Consensus 215 ~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tRp 294 (698)
T KOG2340|consen 215 EPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTRP 294 (698)
T ss_pred CcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCCc
Confidence 56899999999999888986643 3335555 5578888888876421 0 0112369
Q ss_pred eEEEEccChhhHHHHHHHHHHHhhcCCC----c----eEEEEECC----------------------CCHHH--------
Q 013858 196 LALVLAPTRELAQQIEKEVKALSRSLDS----F----KTAIVVGG----------------------TNIAE-------- 237 (435)
Q Consensus 196 ~~lil~P~r~la~q~~~~~~~~~~~~~~----~----~~~~~~g~----------------------~~~~~-------- 237 (435)
++||+||+|+.|-.+...+..+..+... + +..--++| ++..-
T Consensus 295 kVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ftk 374 (698)
T KOG2340|consen 295 KVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFTK 374 (698)
T ss_pred eEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHHH
Confidence 9999999999999888888666322211 0 11111111 11100
Q ss_pred HHHHH---hCCCcEEEECcHHHHHHHHcC-----C-CCCCCceEEEEecCCcccCCCCHHHHHHHH---HhCCCC-----
Q 013858 238 QRSEL---RGGVSIVVATPGRFLDHLQQG-----N-TSLSRVSFVILDEADRMLDMGFEPQIREVM---QNLPDK----- 300 (435)
Q Consensus 238 ~~~~~---~~~~~I~v~T~~~l~~~l~~~-----~-~~l~~~~~iIiDEah~~~~~~~~~~i~~i~---~~~~~~----- 300 (435)
....+ ....+|+||+|=-|.-.+... + -.|+.+.++|||-||.++...+. .+..|+ ..+|.+
T Consensus 375 KtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNwE-hl~~ifdHLn~~P~k~h~~D 453 (698)
T KOG2340|consen 375 KTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNWE-HLLHIFDHLNLQPSKQHDVD 453 (698)
T ss_pred HHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhHH-HHHHHHHHhhcCcccccCCC
Confidence 00000 134689999998775555421 1 23678899999999966543322 222333 333321
Q ss_pred ----------------CeEEEEcccccHHHHHHHHHHcCCCe---EEE----eCCCCCCCCceEEEEEEc-------Chh
Q 013858 301 ----------------HQTLLFSATMPVEIEALAQEYLTDPV---QVK----VGKVSSPTANVIQILEKV-------SEN 350 (435)
Q Consensus 301 ----------------~q~i~~SATl~~~~~~~~~~~~~~~~---~i~----~~~~~~~~~~i~~~~~~~-------~~~ 350 (435)
+|+++||+--.+....+...+..+.. ... -+........+.|.+..+ ...
T Consensus 454 fSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~D 533 (698)
T KOG2340|consen 454 FSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETPD 533 (698)
T ss_pred hhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCch
Confidence 47888888877777777666655421 111 111122223344444443 234
Q ss_pred hHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEE
Q 013858 351 EKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVF 430 (435)
Q Consensus 351 ~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVa 430 (435)
.++.+....+.-...+ .....+||+.++.-.--.+..+++++++....+|--.++.+-.++-+.|..|...||+-
T Consensus 534 ~RFkyFv~~ImPq~~k-----~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLy 608 (698)
T KOG2340|consen 534 ARFKYFVDKIMPQLIK-----RTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLY 608 (698)
T ss_pred HHHHHHHHhhchhhcc-----cccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEE
Confidence 5566655544332221 22344899999999999999999999999888998888888888889999999999998
Q ss_pred cC
Q 013858 431 SY 432 (435)
Q Consensus 431 T~ 432 (435)
|.
T Consensus 609 TE 610 (698)
T KOG2340|consen 609 TE 610 (698)
T ss_pred eh
Confidence 74
No 165
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.66 E-value=1.6e-07 Score=99.14 Aligned_cols=75 Identities=16% Similarity=0.150 Sum_probs=59.7
Q ss_pred CCCCCCcHHHHHHHHHHh----cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHH
Q 013858 139 HEYTRPTSIQAQAMPVAL----SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEV 214 (435)
Q Consensus 139 ~~~~~p~~~Q~~~i~~~~----~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~ 214 (435)
+.|..++|.|.+.+..+. .+.++++.+|||+|||++.+.|.+.+....+ ..+++++.+.|..=..|..+++
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~-----~~~kIiy~sRThsQl~q~i~El 80 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP-----EVRKIIYASRTHSQLEQATEEL 80 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc-----ccccEEEEcccchHHHHHHHHH
Confidence 346667999999887765 6788999999999999999889988765431 2367899998888778888888
Q ss_pred HHHh
Q 013858 215 KALS 218 (435)
Q Consensus 215 ~~~~ 218 (435)
+++.
T Consensus 81 k~~~ 84 (705)
T TIGR00604 81 RKLM 84 (705)
T ss_pred Hhhh
Confidence 7753
No 166
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.65 E-value=1.8e-08 Score=103.90 Aligned_cols=167 Identities=19% Similarity=0.209 Sum_probs=112.8
Q ss_pred CCcHHHHHHHHHHhcC-CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcC
Q 013858 143 RPTSIQAQAMPVALSG-RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (435)
Q Consensus 143 ~p~~~Q~~~i~~~~~~-~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~ 221 (435)
...|.|.+.+..+.+- .++++.+|||+|||.+|.+.++..+...+ +.++++++|-.+|+..-...+......
T Consensus 927 ~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p------~~kvvyIap~kalvker~~Dw~~r~~~- 999 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYP------GSKVVYIAPDKALVKERSDDWSKRDEL- 999 (1230)
T ss_pred ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCC------CccEEEEcCCchhhcccccchhhhccc-
Confidence 4456777766666543 46999999999999999988887765543 578999999999988887777665533
Q ss_pred CCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHH--cCCCCCCCceEEEEecCCcccCCCCHHHHHH-------
Q 013858 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQ--QGNTSLSRVSFVILDEADRMLDMGFEPQIRE------- 292 (435)
Q Consensus 222 ~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~--~~~~~l~~~~~iIiDEah~~~~~~~~~~i~~------- 292 (435)
++++++-+.|....... ....++++|+||+++..... +....+.+++.+|+||.|.+... .++.+..
T Consensus 1000 ~g~k~ie~tgd~~pd~~---~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~-rgPVle~ivsr~n~ 1075 (1230)
T KOG0952|consen 1000 PGIKVIELTGDVTPDVK---AVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED-RGPVLEVIVSRMNY 1075 (1230)
T ss_pred CCceeEeccCccCCChh---heecCceEEcccccccCccccccchhhhccccceeecccccccCC-CcceEEEEeecccc
Confidence 47888888887765421 22357999999999866654 23456788999999999976543 2222221
Q ss_pred HHHhCCCCCeEEEEcccccHHHHHHHHHH
Q 013858 293 VMQNLPDKHQTLLFSATMPVEIEALAQEY 321 (435)
Q Consensus 293 i~~~~~~~~q~i~~SATl~~~~~~~~~~~ 321 (435)
+-....+..+.+++|- .+....+++.+.
T Consensus 1076 ~s~~t~~~vr~~glst-a~~na~dla~wl 1103 (1230)
T KOG0952|consen 1076 ISSQTEEPVRYLGLST-ALANANDLADWL 1103 (1230)
T ss_pred CccccCcchhhhhHhh-hhhccHHHHHHh
Confidence 1222344566666653 333444444443
No 167
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.62 E-value=2.4e-07 Score=97.40 Aligned_cols=76 Identities=24% Similarity=0.276 Sum_probs=61.2
Q ss_pred HHHHCCCCCCcHHHHHHHHHHh----cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHH
Q 013858 135 DIEFHEYTRPTSIQAQAMPVAL----SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQI 210 (435)
Q Consensus 135 ~l~~~~~~~p~~~Q~~~i~~~~----~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~ 210 (435)
....+....|++.|.+.+..+. +++.+++.||||+|||++|++|++.+.... +..++|.++|+.+-.|+
T Consensus 7 ~~~~~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~-------~~~viist~t~~lq~q~ 79 (654)
T COG1199 7 LAVAFPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREE-------GKKVIISTRTKALQEQL 79 (654)
T ss_pred HHhhCCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHc-------CCcEEEECCCHHHHHHH
Confidence 3455667789999999986654 455699999999999999999999986653 46799999999888888
Q ss_pred HHHHHHH
Q 013858 211 EKEVKAL 217 (435)
Q Consensus 211 ~~~~~~~ 217 (435)
.++...+
T Consensus 80 ~~~~~~~ 86 (654)
T COG1199 80 LEEDLPI 86 (654)
T ss_pred HHhhcch
Confidence 7766554
No 168
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.60 E-value=3e-06 Score=87.58 Aligned_cols=126 Identities=23% Similarity=0.280 Sum_probs=91.7
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcC
Q 013858 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (435)
Q Consensus 142 ~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~ 221 (435)
.+|+.+|..+--.+. ..-|.-+.||=|||+++.+|+....+. |..+.+++..--||.--++.+.++...+
T Consensus 79 ~~~~dVQliG~i~lh--~g~iaEM~TGEGKTL~atlp~ylnaL~--------gkgVhvVTvNdYLA~RDae~m~~l~~~L 148 (822)
T COG0653 79 MRHFDVQLLGGIVLH--LGDIAEMRTGEGKTLVATLPAYLNALA--------GKGVHVVTVNDYLARRDAEWMGPLYEFL 148 (822)
T ss_pred CChhhHHHhhhhhhc--CCceeeeecCCchHHHHHHHHHHHhcC--------CCCcEEeeehHHhhhhCHHHHHHHHHHc
Confidence 345566655554444 445888999999999999998766554 5568888887788888888888888776
Q ss_pred CCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHH-HHHHHc------CCCCCCCceEEEEecCCc
Q 013858 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQ------GNTSLSRVSFVILDEADR 280 (435)
Q Consensus 222 ~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l-~~~l~~------~~~~l~~~~~iIiDEah~ 280 (435)
++.+++...+....+....+. |+|.++|-..| .+++.- .....+.+.+-|+||+|-
T Consensus 149 -GlsvG~~~~~m~~~ek~~aY~--~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDS 211 (822)
T COG0653 149 -GLSVGVILAGMSPEEKRAAYA--CDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDS 211 (822)
T ss_pred -CCceeeccCCCChHHHHHHHh--cCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhh
Confidence 799999999998877776665 89999998766 111111 122345678888888883
No 169
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.59 E-value=2.4e-07 Score=81.81 Aligned_cols=121 Identities=21% Similarity=0.289 Sum_probs=72.1
Q ss_pred CcHHHHHHHHHHhcCC--CEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcC
Q 013858 144 PTSIQAQAMPVALSGR--DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (435)
Q Consensus 144 p~~~Q~~~i~~~~~~~--~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~ 221 (435)
+++-|+.++..++.+. -++++|+.|+|||++. ..+...+... +.++++++||...+..+.+.. +
T Consensus 2 L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l-~~~~~~~~~~-------g~~v~~~apT~~Aa~~L~~~~---~--- 67 (196)
T PF13604_consen 2 LNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLL-KALAEALEAA-------GKRVIGLAPTNKAAKELREKT---G--- 67 (196)
T ss_dssp S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHH-HHHHHHHHHT-------T--EEEEESSHHHHHHHHHHH---T---
T ss_pred CCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHH-HHHHHHHHhC-------CCeEEEECCcHHHHHHHHHhh---C---
Confidence 5788999999997544 4888999999999853 3344443332 578999999988877654431 1
Q ss_pred CCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCC----CCCCCceEEEEecCCcccCCCCHHHHHHHHHhC
Q 013858 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGN----TSLSRVSFVILDEADRMLDMGFEPQIREVMQNL 297 (435)
Q Consensus 222 ~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~----~~l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~ 297 (435)
+. ..|...++....... ..+...++||||||-.+ -...+..++...
T Consensus 68 --~~------------------------a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv----~~~~~~~ll~~~ 117 (196)
T PF13604_consen 68 --IE------------------------AQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMV----DSRQLARLLRLA 117 (196)
T ss_dssp --S-------------------------EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-----BHHHHHHHHHHS
T ss_pred --cc------------------------hhhHHHHHhcCCcccccccccCCcccEEEEeccccc----CHHHHHHHHHHH
Confidence 11 223322222211111 11566789999999966 245677777777
Q ss_pred CC-CCeEEEEcc
Q 013858 298 PD-KHQTLLFSA 308 (435)
Q Consensus 298 ~~-~~q~i~~SA 308 (435)
+. ..++|++-=
T Consensus 118 ~~~~~klilvGD 129 (196)
T PF13604_consen 118 KKSGAKLILVGD 129 (196)
T ss_dssp -T-T-EEEEEE-
T ss_pred HhcCCEEEEECC
Confidence 66 667666643
No 170
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=98.55 E-value=2e-06 Score=93.82 Aligned_cols=134 Identities=19% Similarity=0.201 Sum_probs=90.2
Q ss_pred CCCcHHHHHHHHHHh-----cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHH
Q 013858 142 TRPTSIQAQAMPVAL-----SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 216 (435)
Q Consensus 142 ~~p~~~Q~~~i~~~~-----~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~ 216 (435)
..++++|..++.++. .+.+.+++.++|.|||... +..+.++...... ..+..++++|+ +++.+|.+++.+
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~-i~~l~~~~~~~~~---~~~~~liv~p~-s~~~nw~~e~~k 411 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQT-IALLLSLLESIKV---YLGPALIVVPA-SLLSNWKREFEK 411 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHH-HHHHHhhhhcccC---CCCCeEEEecH-HHHHHHHHHHhh
Confidence 456888999998865 2567899999999999764 4444443332211 13569999998 666779999988
Q ss_pred HhhcCCCce-EEEEECCCCH----HHHHHHHhCC-----CcEEEECcHHHHHHH-HcCCCCCCCceEEEEecCCcccC
Q 013858 217 LSRSLDSFK-TAIVVGGTNI----AEQRSELRGG-----VSIVVATPGRFLDHL-QQGNTSLSRVSFVILDEADRMLD 283 (435)
Q Consensus 217 ~~~~~~~~~-~~~~~g~~~~----~~~~~~~~~~-----~~I~v~T~~~l~~~l-~~~~~~l~~~~~iIiDEah~~~~ 283 (435)
+... ++ +....|.... ......+... .+++++|++.+.+.. ....+.-..+.++|+||||++.+
T Consensus 412 ~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn 486 (866)
T COG0553 412 FAPD---LRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKN 486 (866)
T ss_pred hCcc---ccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhh
Confidence 7754 44 5556665531 3333333322 689999999997732 11234445789999999998655
No 171
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.54 E-value=2.2e-07 Score=84.45 Aligned_cols=72 Identities=24% Similarity=0.317 Sum_probs=50.2
Q ss_pred CcHHHHHHHHHHhcCCC-EEEEccCCCchhHHhHHHHHHHHHhcC-CCCCCCCCeEEEEccChhhHHHHHHHHHH
Q 013858 144 PTSIQAQAMPVALSGRD-LLGCAETGSGKTAAFTIPMIQHCVAQT-PVGRGDGPLALVLAPTRELAQQIEKEVKA 216 (435)
Q Consensus 144 p~~~Q~~~i~~~~~~~~-vii~~~TGsGKT~~~~~~~l~~~~~~~-~~~~~~~~~~lil~P~r~la~q~~~~~~~ 216 (435)
+.+.|..|+..++.... .+|.||.|+|||.+. ..++..+.... ......+.++|+++|+...+..+.+.+.+
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l-~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTTL-ASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHHH-HHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHHH-HHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 46789999999999888 999999999999653 34444442100 00122367899999999999999888876
No 172
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.49 E-value=8.2e-07 Score=77.93 Aligned_cols=141 Identities=15% Similarity=0.264 Sum_probs=73.4
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHH-------HHHH
Q 013858 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQI-------EKEV 214 (435)
Q Consensus 142 ~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~-------~~~~ 214 (435)
...+..|..++.++++.+-+++.||.|+|||+.++..++..+.. + ...+++|+-|..+....+ .+.+
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~-g-----~~~kiii~Rp~v~~~~~lGflpG~~~eK~ 76 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKE-G-----EYDKIIITRPPVEAGEDLGFLPGDLEEKM 76 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHT-T-----S-SEEEEEE-S--TT----SS--------
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHh-C-----CCcEEEEEecCCCCccccccCCCCHHHHH
Confidence 34578999999999977889999999999999887777777654 2 235677777876431111 1111
Q ss_pred HH----HhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCCCHHHH
Q 013858 215 KA----LSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQI 290 (435)
Q Consensus 215 ~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~~~~~i 290 (435)
.. +.+.+..+- +..... .+.....|-+.....+ ++. .+. -.+||||||+.+ -..++
T Consensus 77 ~p~~~p~~d~l~~~~-----~~~~~~----~~~~~~~Ie~~~~~~i-----RGr-t~~-~~~iIvDEaQN~----t~~~~ 136 (205)
T PF02562_consen 77 EPYLRPIYDALEELF-----GKEKLE----ELIQNGKIEIEPLAFI-----RGR-TFD-NAFIIVDEAQNL----TPEEL 136 (205)
T ss_dssp -TTTHHHHHHHTTTS------TTCHH----HHHHTTSEEEEEGGGG-----TT---B--SEEEEE-SGGG------HHHH
T ss_pred HHHHHHHHHHHHHHh-----ChHhHH----HHhhcCeEEEEehhhh-----cCc-ccc-ceEEEEecccCC----CHHHH
Confidence 10 000000000 111111 1112334555554322 211 233 389999999976 46789
Q ss_pred HHHHHhCCCCCeEEEEcc
Q 013858 291 REVMQNLPDKHQTLLFSA 308 (435)
Q Consensus 291 ~~i~~~~~~~~q~i~~SA 308 (435)
..++.++..++++|++--
T Consensus 137 k~ilTR~g~~skii~~GD 154 (205)
T PF02562_consen 137 KMILTRIGEGSKIIITGD 154 (205)
T ss_dssp HHHHTTB-TT-EEEEEE-
T ss_pred HHHHcccCCCcEEEEecC
Confidence 999999999998877643
No 173
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=98.43 E-value=8.7e-07 Score=87.19 Aligned_cols=65 Identities=28% Similarity=0.389 Sum_probs=52.9
Q ss_pred CCCcHHHHHHHHHHhcCCC-EEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHH
Q 013858 142 TRPTSIQAQAMPVALSGRD-LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEV 214 (435)
Q Consensus 142 ~~p~~~Q~~~i~~~~~~~~-vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~ 214 (435)
+.+.+-|+.|+....+.++ .+|.||+|+|||.+. .-+++++..+ +.++||.+||.+.+..+.+++
T Consensus 184 ~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~Tl-vEiI~qlvk~-------~k~VLVcaPSn~AVdNiverl 249 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTL-VEIISQLVKQ-------KKRVLVCAPSNVAVDNIVERL 249 (649)
T ss_pred ccccHHHHHHHHHHhccCCceEeeCCCCCCceeeH-HHHHHHHHHc-------CCeEEEEcCchHHHHHHHHHh
Confidence 4567789999999998866 899999999999875 4455555554 688999999999988887753
No 174
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.35 E-value=1.6e-05 Score=73.17 Aligned_cols=172 Identities=15% Similarity=0.194 Sum_probs=107.3
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHHHHHHHh----------cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCC
Q 013858 126 MCLHPSIMKDIEFHEYTRPTSIQAQAMPVAL----------SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGP 195 (435)
Q Consensus 126 ~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~----------~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~ 195 (435)
+.|++.+... -.+...|.+++-.+. .+.-.++-..||.||--...--++...+. + ..
T Consensus 26 ~~lp~~~~~~------g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~-G------r~ 92 (303)
T PF13872_consen 26 LHLPEEVIDS------GLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLR-G------RK 92 (303)
T ss_pred cCCCHHHHhc------ccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHc-C------CC
Confidence 3566655443 235788888886654 12358888899999998543334444333 1 34
Q ss_pred eEEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcC---CCCC-----
Q 013858 196 LALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQG---NTSL----- 267 (435)
Q Consensus 196 ~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~---~~~l----- 267 (435)
+.|++..+..|-....+-++.++.. .+.+..+..-... ....-...|+|+|+..|...-..+ ...+
T Consensus 93 r~vwvS~s~dL~~Da~RDl~DIG~~--~i~v~~l~~~~~~----~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~ 166 (303)
T PF13872_consen 93 RAVWVSVSNDLKYDAERDLRDIGAD--NIPVHPLNKFKYG----DIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVD 166 (303)
T ss_pred ceEEEECChhhhhHHHHHHHHhCCC--cccceechhhccC----cCCCCCCCccchhHHHHHhHHhccCCccchHHHHHH
Confidence 6999999999999999999988754 2333222211000 001223479999999987765321 1111
Q ss_pred ----CCceEEEEecCCcccCCC--------CHHHHHHHHHhCCCCCeEEEEcccccHHHHHH
Q 013858 268 ----SRVSFVILDEADRMLDMG--------FEPQIREVMQNLPDKHQTLLFSATMPVEIEAL 317 (435)
Q Consensus 268 ----~~~~~iIiDEah~~~~~~--------~~~~i~~i~~~~~~~~q~i~~SATl~~~~~~~ 317 (435)
..=.+||+||||+..+.. ....+..+...+|.. ++|.+|||--.+.+.+
T Consensus 167 W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~A-RvvY~SATgasep~Nm 227 (303)
T PF13872_consen 167 WCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNA-RVVYASATGASEPRNM 227 (303)
T ss_pred HHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCCC-cEEEecccccCCCcee
Confidence 123589999999876643 224566677777654 4999999985555443
No 175
>PRK10536 hypothetical protein; Provisional
Probab=98.29 E-value=3.5e-05 Score=69.71 Aligned_cols=145 Identities=17% Similarity=0.188 Sum_probs=81.7
Q ss_pred HCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhH----------
Q 013858 138 FHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELA---------- 207 (435)
Q Consensus 138 ~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la---------- 207 (435)
..++...+..|...+.++.++..+++.|++|+|||+.+....+..+... .-.+++|.=|+....
T Consensus 54 ~~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~------~~~kIiI~RP~v~~ge~LGfLPG~~ 127 (262)
T PRK10536 54 TSPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHK------DVDRIIVTRPVLQADEDLGFLPGDI 127 (262)
T ss_pred CccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcC------CeeEEEEeCCCCCchhhhCcCCCCH
Confidence 3455667889999999998888899999999999997655444444331 123455554664321
Q ss_pred -HHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHh-CCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCC
Q 013858 208 -QQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELR-GGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG 285 (435)
Q Consensus 208 -~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~ 285 (435)
.-+.-.+..+.+.+.. +.|.. .....+. ....|-|... .++ ++. .+ .-++||||||+.+
T Consensus 128 ~eK~~p~~~pi~D~L~~-----~~~~~---~~~~~~~~~~~~Iei~~l----~ym-RGr-tl-~~~~vIvDEaqn~---- 188 (262)
T PRK10536 128 AEKFAPYFRPVYDVLVR-----RLGAS---FMQYCLRPEIGKVEIAPF----AYM-RGR-TF-ENAVVILDEAQNV---- 188 (262)
T ss_pred HHHHHHHHHHHHHHHHH-----HhChH---HHHHHHHhccCcEEEecH----HHh-cCC-cc-cCCEEEEechhcC----
Confidence 1111112222221110 01111 1111111 1223444443 223 222 23 3489999999976
Q ss_pred CHHHHHHHHHhCCCCCeEEEEc
Q 013858 286 FEPQIREVMQNLPDKHQTLLFS 307 (435)
Q Consensus 286 ~~~~i~~i~~~~~~~~q~i~~S 307 (435)
-..++..++..+..+.++|+.-
T Consensus 189 ~~~~~k~~ltR~g~~sk~v~~G 210 (262)
T PRK10536 189 TAAQMKMFLTRLGENVTVIVNG 210 (262)
T ss_pred CHHHHHHHHhhcCCCCEEEEeC
Confidence 3578888999999988877643
No 176
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=98.28 E-value=1.2e-05 Score=82.46 Aligned_cols=140 Identities=21% Similarity=0.302 Sum_probs=86.0
Q ss_pred HHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcCCCce
Q 013858 146 SIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFK 225 (435)
Q Consensus 146 ~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~~~~~ 225 (435)
.+|+.++..++.++-++|.|+.|+|||++. ..++..+....+. . .++++++.+||--.|..+.+.+......+.
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v-~~ll~~l~~~~~~-~-~~~~I~l~APTGkAA~rL~e~~~~~~~~l~--- 221 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTV-ARLLLALVKQSPK-Q-GKLRIALAAPTGKAAARLAESLRKAVKNLA--- 221 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHH-HHHHHHHHHhccc-c-CCCcEEEECCcHHHHHHHHHHHHhhhcccc---
Confidence 799999999999999999999999999863 3444444332111 0 135799999999888777666654332211
Q ss_pred EEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHc------CCCCCCCceEEEEecCCcccCCCCHHHHHHHHHhCCC
Q 013858 226 TAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQ------GNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPD 299 (435)
Q Consensus 226 ~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~------~~~~l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~ 299 (435)
.. .. ......+-..|.-+|+..... ...+...+++||||||-.+ + ...+..++..+++
T Consensus 222 ~~--------~~----~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMv-d---~~l~~~ll~al~~ 285 (586)
T TIGR01447 222 AA--------EA----LIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMV-D---LPLMAKLLKALPP 285 (586)
T ss_pred cc--------hh----hhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccC-C---HHHHHHHHHhcCC
Confidence 00 00 000011223344333322110 0112346899999999854 2 4567778888888
Q ss_pred CCeEEEEc
Q 013858 300 KHQTLLFS 307 (435)
Q Consensus 300 ~~q~i~~S 307 (435)
..++|++-
T Consensus 286 ~~rlIlvG 293 (586)
T TIGR01447 286 NTKLILLG 293 (586)
T ss_pred CCEEEEEC
Confidence 88887764
No 177
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=98.27 E-value=9.8e-06 Score=83.21 Aligned_cols=140 Identities=19% Similarity=0.260 Sum_probs=85.6
Q ss_pred cHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcCCCc
Q 013858 145 TSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSF 224 (435)
Q Consensus 145 ~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~~~~ 224 (435)
.++|+.|+...+.++-++|.|+.|+|||++. .-++..+.... ......+++.+||.-.|..+.+.+.......+ +
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v-~~ll~~l~~~~---~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~-~ 228 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTV-AKLLAALIQLA---DGERCRIRLAAPTGKAAARLTESLGKALRQLP-L 228 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHH-HHHHHHHHHhc---CCCCcEEEEECCcHHHHHHHHHHHHhhhhccc-c
Confidence 5899999999999999999999999999863 33444333321 11235688889999888888776654432221 0
Q ss_pred eEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHH------cCCCCCCCceEEEEecCCcccCCCCHHHHHHHHHhCC
Q 013858 225 KTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQ------QGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLP 298 (435)
Q Consensus 225 ~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~------~~~~~l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~ 298 (435)
. . . .......-..|--+|+.... ....+.-.+++||||||-.+ -...+..++..++
T Consensus 229 ~-----~-----~----~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMv----d~~lm~~ll~al~ 290 (615)
T PRK10875 229 T-----D-----E----QKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMV----DLPMMARLIDALP 290 (615)
T ss_pred c-----h-----h----hhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhcc----cHHHHHHHHHhcc
Confidence 0 0 0 00000111223333322110 11112335789999999954 2556777888889
Q ss_pred CCCeEEEEc
Q 013858 299 DKHQTLLFS 307 (435)
Q Consensus 299 ~~~q~i~~S 307 (435)
+..++|++-
T Consensus 291 ~~~rlIlvG 299 (615)
T PRK10875 291 PHARVIFLG 299 (615)
T ss_pred cCCEEEEec
Confidence 888888875
No 178
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.25 E-value=8.6e-06 Score=80.82 Aligned_cols=77 Identities=19% Similarity=0.225 Sum_probs=61.3
Q ss_pred HHHHCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHH
Q 013858 135 DIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEV 214 (435)
Q Consensus 135 ~l~~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~ 214 (435)
.+-..++..+..-|..|+.+++...-.+|+||.|+|||.+.. .++-++.... +..+|+.+|+...+.|+++.+
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa-~IVyhl~~~~------~~~VLvcApSNiAVDqLaeKI 474 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSA-TIVYHLARQH------AGPVLVCAPSNIAVDQLAEKI 474 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhH-HHHHHHHHhc------CCceEEEcccchhHHHHHHHH
Confidence 344456778899999999999999999999999999998653 3444444432 466999999999999998888
Q ss_pred HHHh
Q 013858 215 KALS 218 (435)
Q Consensus 215 ~~~~ 218 (435)
.+.+
T Consensus 475 h~tg 478 (935)
T KOG1802|consen 475 HKTG 478 (935)
T ss_pred HhcC
Confidence 7753
No 179
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=98.20 E-value=8e-06 Score=79.13 Aligned_cols=108 Identities=18% Similarity=0.295 Sum_probs=67.3
Q ss_pred CEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHH
Q 013858 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQR 239 (435)
Q Consensus 160 ~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 239 (435)
.++|.|..|||||+++ +-++..+.. ...+..++++++...|...+...+..-...
T Consensus 3 v~~I~G~aGTGKTvla-~~l~~~l~~-----~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~------------------- 57 (352)
T PF09848_consen 3 VILITGGAGTGKTVLA-LNLAKELQN-----SEEGKKVLYLCGNHPLRNKLREQLAKKYNP------------------- 57 (352)
T ss_pred EEEEEecCCcCHHHHH-HHHHHHhhc-----cccCCceEEEEecchHHHHHHHHHhhhccc-------------------
Confidence 4799999999999864 444444411 123677999999999988776666543200
Q ss_pred HHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCC-------CHHHHHHHHHh
Q 013858 240 SELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG-------FEPQIREVMQN 296 (435)
Q Consensus 240 ~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~-------~~~~i~~i~~~ 296 (435)
......+..+..+...+.........+++|||||||++...+ ....+..++..
T Consensus 58 ----~~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 58 ----KLKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred ----chhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 001233344444433332223456789999999999987731 23566666655
No 180
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=98.20 E-value=2.7e-05 Score=82.06 Aligned_cols=126 Identities=20% Similarity=0.178 Sum_probs=77.4
Q ss_pred CCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhc
Q 013858 141 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRS 220 (435)
Q Consensus 141 ~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~ 220 (435)
-..+++.|+.++..+..++.+++.|+.|+|||++. -.++..+...+ ....+++++||-..|..+.+..
T Consensus 321 ~~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~~-----~~~~v~l~ApTg~AA~~L~e~~------ 388 (720)
T TIGR01448 321 RKGLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEELG-----GLLPVGLAAPTGRAAKRLGEVT------ 388 (720)
T ss_pred CCCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHcC-----CCceEEEEeCchHHHHHHHHhc------
Confidence 35789999999999998889999999999999853 23333332211 0145888899987766443221
Q ss_pred CCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHc-----CCCCCCCceEEEEecCCcccCCCCHHHHHHHHH
Q 013858 221 LDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQ-----GNTSLSRVSFVILDEADRMLDMGFEPQIREVMQ 295 (435)
Q Consensus 221 ~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~-----~~~~l~~~~~iIiDEah~~~~~~~~~~i~~i~~ 295 (435)
+... .|..+++..... ..-.....++||||||+.+- ...+..++.
T Consensus 389 --g~~a------------------------~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSMvd----~~~~~~Ll~ 438 (720)
T TIGR01448 389 --GLTA------------------------STIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSMMD----TWLALSLLA 438 (720)
T ss_pred --CCcc------------------------ccHHHHhhccCCccchhhhhccccCCEEEEeccccCC----HHHHHHHHH
Confidence 1110 011111111000 00112457899999999652 345667777
Q ss_pred hCCCCCeEEEEcc
Q 013858 296 NLPDKHQTLLFSA 308 (435)
Q Consensus 296 ~~~~~~q~i~~SA 308 (435)
.++...|+|++-=
T Consensus 439 ~~~~~~rlilvGD 451 (720)
T TIGR01448 439 ALPDHARLLLVGD 451 (720)
T ss_pred hCCCCCEEEEECc
Confidence 7888888877643
No 181
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=98.19 E-value=1.9e-05 Score=82.05 Aligned_cols=67 Identities=25% Similarity=0.338 Sum_probs=53.7
Q ss_pred CCCcHHHHHHHHHHhcC-CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHH
Q 013858 142 TRPTSIQAQAMPVALSG-RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 216 (435)
Q Consensus 142 ~~p~~~Q~~~i~~~~~~-~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~ 216 (435)
..+.+.|..++..++.. ..++|.||+|+|||.+. ..++..+... +.++|+++||...+.++.+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~-~~ii~~~~~~-------g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTL-VELIRQLVKR-------GLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHH-HHHHHHHHHc-------CCCEEEEcCcHHHHHHHHHHHHh
Confidence 45789999999999876 56999999999999764 4445454442 56899999999999999887765
No 182
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=98.15 E-value=5.9e-05 Score=66.93 Aligned_cols=152 Identities=24% Similarity=0.327 Sum_probs=93.0
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhc---CCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEE
Q 013858 122 SFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALS---GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLAL 198 (435)
Q Consensus 122 ~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~---~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~l 198 (435)
+|+....|.+++=.+... ...++.|.+....+.+ |.+.+.+.-+|.|||.+ ++|++...+..+ ...+.
T Consensus 4 ~w~p~~~P~wLl~E~e~~--iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg------~~Lvr 74 (229)
T PF12340_consen 4 NWDPMEYPDWLLFEIESN--ILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALADG------SRLVR 74 (229)
T ss_pred CCCchhChHHHHHHHHcC--ceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcCC------CcEEE
Confidence 355555666666554333 4568899999888884 57899999999999988 589999888753 34577
Q ss_pred EEccChhhHHHHHHHHH-HHhhcCCCceEEEEEC-CCCHH-H---HH----HHHhCCCcEEEECcHHHHHHHHcC-----
Q 013858 199 VLAPTRELAQQIEKEVK-ALSRSLDSFKTAIVVG-GTNIA-E---QR----SELRGGVSIVVATPGRFLDHLQQG----- 263 (435)
Q Consensus 199 il~P~r~la~q~~~~~~-~~~~~~~~~~~~~~~g-~~~~~-~---~~----~~~~~~~~I~v~T~~~l~~~l~~~----- 263 (435)
+++|. +|..|....+. +++.-++.--+.+=+. ..... . .. ........|+++||+.++.+.-.+
T Consensus 75 viVpk-~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~ 153 (229)
T PF12340_consen 75 VIVPK-ALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQ 153 (229)
T ss_pred EEcCH-HHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHH
Confidence 77786 78899988884 4543322111111111 11111 1 11 112244579999999886542211
Q ss_pred --CC-----------CCCCceEEEEecCCcccC
Q 013858 264 --NT-----------SLSRVSFVILDEADRMLD 283 (435)
Q Consensus 264 --~~-----------~l~~~~~iIiDEah~~~~ 283 (435)
.. .+.+..-=|+||+|.++.
T Consensus 154 ~~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 154 DGKPEEARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred hcCHHHHHHHHHHHHHHHhcCCeEeECchhccC
Confidence 10 123344468899986543
No 183
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.13 E-value=1.7e-05 Score=81.00 Aligned_cols=146 Identities=16% Similarity=0.176 Sum_probs=85.1
Q ss_pred CEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcC-----CCceEEEEECCCC
Q 013858 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL-----DSFKTAIVVGGTN 234 (435)
Q Consensus 160 ~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~-----~~~~~~~~~g~~~ 234 (435)
++=|-++||+|||.+|+--++..-.+++ --+.||++|+.+.-.-+........+++ .+.+.-.+.-...
T Consensus 76 NiDI~METGTGKTy~YlrtmfeLhk~YG------~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~~~ 149 (985)
T COG3587 76 NIDILMETGTGKTYTYLRTMFELHKKYG------LFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYDED 149 (985)
T ss_pred eeeEEEecCCCceeeHHHHHHHHHHHhC------ceeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeechH
Confidence 6889999999999999777776555543 2468999999876555444443333332 2233333322222
Q ss_pred HHHHHHHHhCCCcEEEECcHHHHHH------HHcCCCCCC--------------Cc-eEEEEecCCcccCCCCHHHHHHH
Q 013858 235 IAEQRSELRGGVSIVVATPGRFLDH------LQQGNTSLS--------------RV-SFVILDEADRMLDMGFEPQIREV 293 (435)
Q Consensus 235 ~~~~~~~~~~~~~I~v~T~~~l~~~------l~~~~~~l~--------------~~-~~iIiDEah~~~~~~~~~~i~~i 293 (435)
...........+.|++.|...+.+. +.+...... .+ -++||||-|++... ...+..+
T Consensus 150 ~~~~~~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~rPIvIvDEPh~f~~~--~k~~~~i 227 (985)
T COG3587 150 IEKFKFKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMRPIVIVDEPHRFLGD--DKTYGAI 227 (985)
T ss_pred HHHHhhccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcCCEEEecChhhcccc--hHHHHHH
Confidence 2222333446678888887666433 111111111 11 36899999988643 2333333
Q ss_pred HHhCCCCCeEEEEcccccHHHH
Q 013858 294 MQNLPDKHQTLLFSATMPVEIE 315 (435)
Q Consensus 294 ~~~~~~~~q~i~~SATl~~~~~ 315 (435)
... .+ .-++-++||++....
T Consensus 228 ~~l-~p-l~ilRfgATfkd~y~ 247 (985)
T COG3587 228 KQL-NP-LLILRFGATFKDEYN 247 (985)
T ss_pred Hhh-Cc-eEEEEecccchhhhc
Confidence 333 23 237889999987765
No 184
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=98.09 E-value=3.6e-05 Score=79.28 Aligned_cols=145 Identities=14% Similarity=0.188 Sum_probs=89.4
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcCC---CceEEEEECCCC
Q 013858 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD---SFKTAIVVGGTN 234 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~~---~~~~~~~~g~~~ 234 (435)
|-.+|+.--+|.|||+.. +.+++-++.... ..-.++||++|...+ ..|.++|.++...+. .+.+..+.....
T Consensus 696 GsGcILAHcMGLGKTlQV-vtflhTvL~c~k---lg~ktaLvV~PlNt~-~NW~~EFekWm~~~e~~~~leV~eL~~vkr 770 (1567)
T KOG1015|consen 696 GSGCILAHCMGLGKTLQV-VTFLHTVLLCDK---LGFKTALVVCPLNTA-LNWMNEFEKWMEGLEDDEKLEVSELATVKR 770 (1567)
T ss_pred CcchHHHHhhcccceehh-hHHHHHHHHhhc---cCCceEEEEcchHHH-HHHHHHHHHhcccccccccceeehhhhccC
Confidence 446888889999999853 444444443322 123679999999655 559999999987532 344444444333
Q ss_pred HHHHH---HHHhCCCcEEEECcHHHHHHHHcCCCC-------------CCCceEEEEecCCcccCCCCHHHHHHHHHhCC
Q 013858 235 IAEQR---SELRGGVSIVVATPGRFLDHLQQGNTS-------------LSRVSFVILDEADRMLDMGFEPQIREVMQNLP 298 (435)
Q Consensus 235 ~~~~~---~~~~~~~~I~v~T~~~l~~~l~~~~~~-------------l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~ 298 (435)
..... ..+.....|.|+-+.++..+....... -..-++||.||+|.+.|. ...+.+.+..++
T Consensus 771 ~e~R~~~L~~W~~~ggVmIiGYdmyRnLa~gr~vk~rk~ke~f~k~lvdpGPD~vVCDE~HiLKNe--ksa~Skam~~ir 848 (1567)
T KOG1015|consen 771 PEERSYMLQRWQEDGGVMIIGYDMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKNE--KSAVSKAMNSIR 848 (1567)
T ss_pred hHHHHHHHHHHHhcCCEEEEehHHHHHHhcccchhhhHHHHHHHHhccCCCCCeEEecchhhhccc--hHHHHHHHHHHH
Confidence 33333 233445578998888875554332221 223589999999988775 334444444444
Q ss_pred CCCeEEEEcccc
Q 013858 299 DKHQTLLFSATM 310 (435)
Q Consensus 299 ~~~q~i~~SATl 310 (435)
-.+ .|++|.|+
T Consensus 849 tkR-RI~LTGTP 859 (1567)
T KOG1015|consen 849 TKR-RIILTGTP 859 (1567)
T ss_pred hhe-eEEeecCc
Confidence 444 46777775
No 185
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=98.00 E-value=1.4e-05 Score=59.18 Aligned_cols=43 Identities=26% Similarity=0.525 Sum_probs=40.6
Q ss_pred HHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 392 EALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 392 ~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
++|+..++.+..+||++++.+|..+++.|+.|..+|||||+++
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~ 43 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDIL 43 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGG
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccc
Confidence 4688899999999999999999999999999999999999875
No 186
>PF13245 AAA_19: Part of AAA domain
Probab=98.00 E-value=3.3e-05 Score=56.59 Aligned_cols=60 Identities=32% Similarity=0.438 Sum_probs=40.6
Q ss_pred HHHHHhcCC-CEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHH
Q 013858 151 AMPVALSGR-DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEV 214 (435)
Q Consensus 151 ~i~~~~~~~-~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~ 214 (435)
++...+.+. -++|.||.|+|||... +..+..+.... ..+ +.++++++|++.++..+.+++
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~-~~~i~~l~~~~--~~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTL-AARIAELLAAR--ADP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHH-HHHHHHHHHHh--cCC-CCeEEEECCCHHHHHHHHHHH
Confidence 344334444 4667999999999654 44555544321 112 568999999999999887777
No 187
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.91 E-value=0.00016 Score=76.60 Aligned_cols=122 Identities=16% Similarity=0.177 Sum_probs=73.9
Q ss_pred CCCcHHHHHHHHHHhcC-CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhc
Q 013858 142 TRPTSIQAQAMPVALSG-RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRS 220 (435)
Q Consensus 142 ~~p~~~Q~~~i~~~~~~-~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~ 220 (435)
..+++-|+.++..++.+ +-++|.|+.|+|||+. +-.+...+.. .|..+++++||-..|..+.+.
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtl--l~~i~~~~~~------~g~~V~~~ApTg~Aa~~L~~~------- 415 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTM--LKAAREAWEA------AGYRVIGAALSGKAAEGLQAE------- 415 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHH--HHHHHHHHHh------CCCeEEEEeCcHHHHHHHHhc-------
Confidence 35789999999999875 5689999999999984 3334433332 156799999997665544221
Q ss_pred CCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCCCHHHHHHHHHh-CCC
Q 013858 221 LDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQN-LPD 299 (435)
Q Consensus 221 ~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~~~~~i~~i~~~-~~~ 299 (435)
. ++... |-..++.........+...++||||||-.+-. ..+..++.. ...
T Consensus 416 ~-g~~a~------------------------Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~~----~~~~~Ll~~~~~~ 466 (744)
T TIGR02768 416 S-GIESR------------------------TLASLEYAWANGRDLLSDKDVLVIDEAGMVGS----RQMARVLKEAEEA 466 (744)
T ss_pred c-CCcee------------------------eHHHHHhhhccCcccCCCCcEEEEECcccCCH----HHHHHHHHHHHhc
Confidence 1 11111 22222211222233466889999999996532 233344442 234
Q ss_pred CCeEEEEc
Q 013858 300 KHQTLLFS 307 (435)
Q Consensus 300 ~~q~i~~S 307 (435)
..++|++-
T Consensus 467 ~~kliLVG 474 (744)
T TIGR02768 467 GAKVVLVG 474 (744)
T ss_pred CCEEEEEC
Confidence 56776665
No 188
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.90 E-value=0.00015 Score=77.98 Aligned_cols=124 Identities=19% Similarity=0.198 Sum_probs=76.2
Q ss_pred CCCcHHHHHHHHHHhcCCC-EEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhc
Q 013858 142 TRPTSIQAQAMPVALSGRD-LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRS 220 (435)
Q Consensus 142 ~~p~~~Q~~~i~~~~~~~~-vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~ 220 (435)
..+++-|++++..++.+++ +++.|..|+|||++ +-.+..++.. .|..++.++||-..|..+.+ .
T Consensus 345 ~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~--l~~~~~~~e~------~G~~V~~~ApTGkAA~~L~e-------~ 409 (988)
T PRK13889 345 LVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM--LGVAREAWEA------AGYEVRGAALSGIAAENLEG-------G 409 (988)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH--HHHHHHHHHH------cCCeEEEecCcHHHHHHHhh-------c
Confidence 4689999999999998665 89999999999985 3334433332 25779999999766544321 1
Q ss_pred CCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCCCHHHHHHHHHhC-CC
Q 013858 221 LDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PD 299 (435)
Q Consensus 221 ~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~-~~ 299 (435)
. ++.. .|...|+.....+...+...++||||||-.+. ...+..++... ..
T Consensus 410 t-Gi~a------------------------~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~----~~~m~~LL~~a~~~ 460 (988)
T PRK13889 410 S-GIAS------------------------RTIASLEHGWGQGRDLLTSRDVLVIDEAGMVG----TRQLERVLSHAADA 460 (988)
T ss_pred c-Ccch------------------------hhHHHHHhhhcccccccccCcEEEEECcccCC----HHHHHHHHHhhhhC
Confidence 1 1110 12222322112223346678999999999553 23444555433 45
Q ss_pred CCeEEEEccc
Q 013858 300 KHQTLLFSAT 309 (435)
Q Consensus 300 ~~q~i~~SAT 309 (435)
..++|++-=+
T Consensus 461 garvVLVGD~ 470 (988)
T PRK13889 461 GAKVVLVGDP 470 (988)
T ss_pred CCEEEEECCH
Confidence 6777776533
No 189
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.88 E-value=9.3e-05 Score=69.13 Aligned_cols=143 Identities=16% Similarity=0.217 Sum_probs=87.1
Q ss_pred CCCCCCcHHHHHHHHHHhcCCC--EEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHH
Q 013858 139 HEYTRPTSIQAQAMPVALSGRD--LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 216 (435)
Q Consensus 139 ~~~~~p~~~Q~~~i~~~~~~~~--vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~ 216 (435)
.|+..-...|..|+..++.... |.+.|+.|+|||+.++.+.+.+...++. ..++|+.=|+..+...+
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~-----y~KiiVtRp~vpvG~dI------ 292 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKR-----YRKIIVTRPTVPVGEDI------ 292 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhh-----hceEEEecCCcCccccc------
Confidence 4666777889999999998763 8899999999999888888888776542 24566666776553322
Q ss_pred HhhcCCCceEEEEECCCCHH---HHHHHHhCCCcEEE----ECcHHHHHHHHcCCCCCC----------CceEEEEecCC
Q 013858 217 LSRSLDSFKTAIVVGGTNIA---EQRSELRGGVSIVV----ATPGRFLDHLQQGNTSLS----------RVSFVILDEAD 279 (435)
Q Consensus 217 ~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~I~v----~T~~~l~~~l~~~~~~l~----------~~~~iIiDEah 279 (435)
+ ++| |+... .+...+..+-.+++ ++.+.|...+.++.+.+. .=.+||||||+
T Consensus 293 -G-fLP---------G~eEeKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQ 361 (436)
T COG1875 293 -G-FLP---------GTEEEKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQ 361 (436)
T ss_pred -C-cCC---------CchhhhccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhh
Confidence 0 111 11000 00111100011111 223344333333322211 12689999999
Q ss_pred cccCCCCHHHHHHHHHhCCCCCeEEEEc
Q 013858 280 RMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (435)
Q Consensus 280 ~~~~~~~~~~i~~i~~~~~~~~q~i~~S 307 (435)
.+ -..++..|+.+..+..++|++.
T Consensus 362 NL----TpheikTiltR~G~GsKIVl~g 385 (436)
T COG1875 362 NL----TPHELKTILTRAGEGSKIVLTG 385 (436)
T ss_pred cc----CHHHHHHHHHhccCCCEEEEcC
Confidence 77 4678999999999999887754
No 190
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.87 E-value=0.0001 Score=64.88 Aligned_cols=131 Identities=18% Similarity=0.197 Sum_probs=69.4
Q ss_pred CEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEc--cChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHH
Q 013858 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA--PTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAE 237 (435)
Q Consensus 160 ~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~--P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 237 (435)
.++++||||+|||++.. -+-.++... +.++.+++ ..|.-|.++.+.+.+.. ++.+.......
T Consensus 3 vi~lvGptGvGKTTt~a-KLAa~~~~~-------~~~v~lis~D~~R~ga~eQL~~~a~~l----~vp~~~~~~~~---- 66 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIA-KLAARLKLK-------GKKVALISADTYRIGAVEQLKTYAEIL----GVPFYVARTES---- 66 (196)
T ss_dssp EEEEEESTTSSHHHHHH-HHHHHHHHT-------T--EEEEEESTSSTHHHHHHHHHHHHH----TEEEEESSTTS----
T ss_pred EEEEECCCCCchHhHHH-HHHHHHhhc-------cccceeecCCCCCccHHHHHHHHHHHh----ccccchhhcch----
Confidence 47899999999998642 222232221 23344444 45665555544443332 23322211111
Q ss_pred HHHHHhCCCcEEEECcHHHH-HHHHcCCCCCCCceEEEEecCCcccC-CCCHHHHHHHHHhCCCCCeEEEEcccccHHHH
Q 013858 238 QRSELRGGVSIVVATPGRFL-DHLQQGNTSLSRVSFVILDEADRMLD-MGFEPQIREVMQNLPDKHQTLLFSATMPVEIE 315 (435)
Q Consensus 238 ~~~~~~~~~~I~v~T~~~l~-~~l~~~~~~l~~~~~iIiDEah~~~~-~~~~~~i~~i~~~~~~~~q~i~~SATl~~~~~ 315 (435)
.|..+. +.+.. ...+++++|+||-+-+... ......+..++....+..-.+.++||...+..
T Consensus 67 --------------~~~~~~~~~l~~--~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~ 130 (196)
T PF00448_consen 67 --------------DPAEIAREALEK--FRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDL 130 (196)
T ss_dssp --------------CHHHHHHHHHHH--HHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHH
T ss_pred --------------hhHHHHHHHHHH--HhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHH
Confidence 122222 22221 1234588999999986543 22345666677666666668899999976655
Q ss_pred HHHHHHc
Q 013858 316 ALAQEYL 322 (435)
Q Consensus 316 ~~~~~~~ 322 (435)
..+..|.
T Consensus 131 ~~~~~~~ 137 (196)
T PF00448_consen 131 EQALAFY 137 (196)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 4555553
No 191
>PRK04296 thymidine kinase; Provisional
Probab=97.86 E-value=3.4e-05 Score=67.76 Aligned_cols=109 Identities=17% Similarity=0.258 Sum_probs=57.3
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccC---hhhHHHHHHHHHHHhhcCCCceEEEEECCCC
Q 013858 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPT---RELAQQIEKEVKALSRSLDSFKTAIVVGGTN 234 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~---r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~ 234 (435)
|.-+++.|++|+|||+.+ +-++...... +.+++++-|. +.....+ +.+++ +...
T Consensus 2 g~i~litG~~GsGKTT~~-l~~~~~~~~~-------g~~v~i~k~~~d~~~~~~~i---~~~lg-----~~~~------- 58 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTEL-LQRAYNYEER-------GMKVLVFKPAIDDRYGEGKV---VSRIG-----LSRE------- 58 (190)
T ss_pred cEEEEEECCCCCHHHHHH-HHHHHHHHHc-------CCeEEEEeccccccccCCcE---ecCCC-----Cccc-------
Confidence 345789999999999764 4444444332 5678877663 2221111 11111 1000
Q ss_pred HHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEcc
Q 013858 235 IAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSA 308 (435)
Q Consensus 235 ~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SA 308 (435)
.+.+.....+++.+.. .-.++++|||||||.+- ..++..++..+.+.-..+++++
T Consensus 59 ------------~~~~~~~~~~~~~~~~---~~~~~dvviIDEaq~l~----~~~v~~l~~~l~~~g~~vi~tg 113 (190)
T PRK04296 59 ------------AIPVSSDTDIFELIEE---EGEKIDCVLIDEAQFLD----KEQVVQLAEVLDDLGIPVICYG 113 (190)
T ss_pred ------------ceEeCChHHHHHHHHh---hCCCCCEEEEEccccCC----HHHHHHHHHHHHHcCCeEEEEe
Confidence 1223445555555543 23568999999998641 2345555555333223455544
No 192
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.85 E-value=0.00036 Score=67.77 Aligned_cols=130 Identities=12% Similarity=0.149 Sum_probs=70.4
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEc--cChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHH
Q 013858 159 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA--PTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIA 236 (435)
Q Consensus 159 ~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~--P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~ 236 (435)
+.++++||||+|||++..--+ .++.... ...+..+.++. +.|..+..+ ++.++... ++.+.
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA-~~~~~~~---~~~g~~V~lit~Dt~R~aa~eQ---L~~~a~~l-gvpv~--------- 237 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLA-AIYGINS---DDKSLNIKIITIDNYRIGAKKQ---IQTYGDIM-GIPVK--------- 237 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHH-HHHHhhh---ccCCCeEEEEeccCccHHHHHH---HHHHhhcC-CcceE---------
Confidence 468999999999998653222 2222110 01133454444 555555544 44444322 22221
Q ss_pred HHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCC-CHHHHHHHHHhCCCC-CeEEEEccccc-HH
Q 013858 237 EQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG-FEPQIREVMQNLPDK-HQTLLFSATMP-VE 313 (435)
Q Consensus 237 ~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~-~~~~i~~i~~~~~~~-~q~i~~SATl~-~~ 313 (435)
.+.++..+...+.. +.++++||||++.++.... ....+..++....++ -.++.+|||.. ..
T Consensus 238 ------------~~~~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~ 301 (388)
T PRK12723 238 ------------AIESFKDLKEEITQ----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSD 301 (388)
T ss_pred ------------eeCcHHHHHHHHHH----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHH
Confidence 11234445444432 3578999999999875321 234555555555433 35788999984 34
Q ss_pred HHHHHHHH
Q 013858 314 IEALAQEY 321 (435)
Q Consensus 314 ~~~~~~~~ 321 (435)
+......|
T Consensus 302 ~~~~~~~~ 309 (388)
T PRK12723 302 VKEIFHQF 309 (388)
T ss_pred HHHHHHHh
Confidence 55555555
No 193
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.84 E-value=8.7e-05 Score=77.04 Aligned_cols=134 Identities=26% Similarity=0.250 Sum_probs=85.2
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCC-EEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChh
Q 013858 127 CLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRD-LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRE 205 (435)
Q Consensus 127 ~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~-vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~ 205 (435)
.+.+.+.+. -...+..-|++|+-.++.-+| .+|.|-+|+|||+.. ..++..+... |.++|+++-|..
T Consensus 657 ~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI-~~LIkiL~~~-------gkkVLLtsyThs 724 (1100)
T KOG1805|consen 657 VLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTI-SLLIKILVAL-------GKKVLLTSYTHS 724 (1100)
T ss_pred ccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhH-HHHHHHHHHc-------CCeEEEEehhhH
Confidence 345555543 234567789999999998777 899999999999854 3333333332 688999999998
Q ss_pred hHHHHHHHHHHHhhcCCCceEEEEECCC-CHHHH-----------------HHHHhCCCcEEEECcHHHHHHHHcCCCCC
Q 013858 206 LAQQIEKEVKALSRSLDSFKTAIVVGGT-NIAEQ-----------------RSELRGGVSIVVATPGRFLDHLQQGNTSL 267 (435)
Q Consensus 206 la~q~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~-----------------~~~~~~~~~I~v~T~~~l~~~l~~~~~~l 267 (435)
++..+.-.++.++-. ....|.. ..... .......+.|+.+|-=-+.+- -+..
T Consensus 725 AVDNILiKL~~~~i~------~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~p----lf~~ 794 (1100)
T KOG1805|consen 725 AVDNILIKLKGFGIY------ILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHP----LFVN 794 (1100)
T ss_pred HHHHHHHHHhccCcc------eeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCch----hhhc
Confidence 888886666655322 1122221 11111 112335567888885333222 2446
Q ss_pred CCceEEEEecCCccc
Q 013858 268 SRVSFVILDEADRML 282 (435)
Q Consensus 268 ~~~~~iIiDEah~~~ 282 (435)
++|++.|||||-.+.
T Consensus 795 R~FD~cIiDEASQI~ 809 (1100)
T KOG1805|consen 795 RQFDYCIIDEASQIL 809 (1100)
T ss_pred cccCEEEEccccccc
Confidence 779999999998664
No 194
>PRK14974 cell division protein FtsY; Provisional
Probab=97.77 E-value=0.00035 Score=66.54 Aligned_cols=55 Identities=15% Similarity=0.212 Sum_probs=41.4
Q ss_pred CCceEEEEecCCcccC-CCCHHHHHHHHHhCCCCCeEEEEcccccHHHHHHHHHHc
Q 013858 268 SRVSFVILDEADRMLD-MGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYL 322 (435)
Q Consensus 268 ~~~~~iIiDEah~~~~-~~~~~~i~~i~~~~~~~~q~i~~SATl~~~~~~~~~~~~ 322 (435)
..+++||||.|.++.. ..+...+..+.....++..++.++||...+....++.|.
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~ 276 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFN 276 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHH
Confidence 3578999999998753 345567777777677777789999998777666677764
No 195
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.75 E-value=0.00061 Score=65.46 Aligned_cols=155 Identities=15% Similarity=0.196 Sum_probs=82.3
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEc--cChh-hHHHHHHHHHHHhhcCCCceEEEEECCCCH
Q 013858 159 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA--PTRE-LAQQIEKEVKALSRSLDSFKTAIVVGGTNI 235 (435)
Q Consensus 159 ~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~--P~r~-la~q~~~~~~~~~~~~~~~~~~~~~g~~~~ 235 (435)
+.+.++||||+|||+....-+ ..+... +.++.++. |.|. .+.| ++.++... +
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA-~~L~~~-------GkkVglI~aDt~RiaAvEQ----Lk~yae~l-g------------ 296 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMA-WQFHGK-------KKTVGFITTDHSRIGTVQQ----LQDYVKTI-G------------ 296 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHH-HHHHHc-------CCcEEEEecCCcchHHHHH----HHHHhhhc-C------------
Confidence 468999999999998543222 222221 34454444 4453 3333 33333221 1
Q ss_pred HHHHHHHhCCCcEE-EECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCC-CHHHHHHHHHhCCCCCeEEEEccccc-H
Q 013858 236 AEQRSELRGGVSIV-VATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG-FEPQIREVMQNLPDKHQTLLFSATMP-V 312 (435)
Q Consensus 236 ~~~~~~~~~~~~I~-v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~-~~~~i~~i~~~~~~~~q~i~~SATl~-~ 312 (435)
+.++ ..+|..+.+.+..-. ...++++|+||-+=+..... ....+..++....+..-++.+|||.. .
T Consensus 297 ----------ipv~v~~d~~~L~~aL~~lk-~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~ 365 (436)
T PRK11889 297 ----------FEVIAVRDEAAMTRALTYFK-EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK 365 (436)
T ss_pred ----------CcEEecCCHHHHHHHHHHHH-hccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChH
Confidence 1222 346666665554311 11258999999997654332 23445555554444444677999764 4
Q ss_pred HHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHHHHH
Q 013858 313 EIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVE 362 (435)
Q Consensus 313 ~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~ 362 (435)
++...++.|-.-++ -...+..++...+...++.....
T Consensus 366 d~~~i~~~F~~~~i-------------dglI~TKLDET~k~G~iLni~~~ 402 (436)
T PRK11889 366 DMIEIITNFKDIHI-------------DGIVFTKFDETASSGELLKIPAV 402 (436)
T ss_pred HHHHHHHHhcCCCC-------------CEEEEEcccCCCCccHHHHHHHH
Confidence 66777777743111 01233444555556666666544
No 196
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.75 E-value=0.00046 Score=66.47 Aligned_cols=167 Identities=17% Similarity=0.158 Sum_probs=80.2
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEc-c-ChhhHHHHHHHHHHHhhcCCCceEEEEECCCC
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA-P-TRELAQQIEKEVKALSRSLDSFKTAIVVGGTN 234 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~-P-~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~ 234 (435)
+|..++++||||+|||+...--+-......+ ..++.+++ . .|.-+.+. ++.+++.. ++.+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G------~~~V~lit~D~~R~ga~Eq---L~~~a~~~-gv~~-------- 197 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFG------ASKVALLTTDSYRIGGHEQ---LRIFGKIL-GVPV-------- 197 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC------CCeEEEEecccccccHHHH---HHHHHHHc-CCce--------
Confidence 3567999999999999864322222222211 12344443 2 23333333 34443332 2222
Q ss_pred HHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCC-CHHHHHHHHHhCCCCCeEEEEcccccH-
Q 013858 235 IAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG-FEPQIREVMQNLPDKHQTLLFSATMPV- 312 (435)
Q Consensus 235 ~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~-~~~~i~~i~~~~~~~~q~i~~SATl~~- 312 (435)
..+.+++.+...+. .+.++++|+||.+=+..... ....+..+.....+...++.++||...
T Consensus 198 -------------~~~~~~~~l~~~l~----~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~ 260 (374)
T PRK14722 198 -------------HAVKDGGDLQLALA----ELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGD 260 (374)
T ss_pred -------------EecCCcccHHHHHH----HhcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChH
Confidence 22334444444443 24567999999997543221 222333332222233457889999844
Q ss_pred HHHHHHHHHcCCCeEEEeCCCCCCCCce-EEEEEEcChhhHHHHHHHHHHHH
Q 013858 313 EIEALAQEYLTDPVQVKVGKVSSPTANV-IQILEKVSENEKVDRLLALLVEE 363 (435)
Q Consensus 313 ~~~~~~~~~~~~~~~i~~~~~~~~~~~i-~~~~~~~~~~~k~~~l~~~l~~~ 363 (435)
.+...++.|....-.. ......+ .-++.++....+...++..+...
T Consensus 261 ~l~evi~~f~~~~~~p-----~~~~~~~~~~I~TKlDEt~~~G~~l~~~~~~ 307 (374)
T PRK14722 261 TLNEVVQAYRSAAGQP-----KAALPDLAGCILTKLDEASNLGGVLDTVIRY 307 (374)
T ss_pred HHHHHHHHHHHhhccc-----ccccCCCCEEEEeccccCCCccHHHHHHHHH
Confidence 4455566663221000 0000011 22344455566667777766543
No 197
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.71 E-value=4.2e-05 Score=62.69 Aligned_cols=19 Identities=42% Similarity=0.441 Sum_probs=12.6
Q ss_pred cCCCEEEEccCCCchhHHh
Q 013858 157 SGRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~ 175 (435)
+++.+++.|++|+|||+..
T Consensus 3 ~~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ----EEEEE-TTSSHHHHH
T ss_pred CCcccEEEcCCCCCHHHHH
Confidence 3457999999999999854
No 198
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=97.70 E-value=9e-05 Score=54.90 Aligned_cols=46 Identities=37% Similarity=0.581 Sum_probs=42.7
Q ss_pred HHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 389 EVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 389 ~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
.+++.|+..++.+..+||+++..+|..+++.|++|..+|||+|+++
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~ 47 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVA 47 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChh
Confidence 5678888889999999999999999999999999999999999875
No 199
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.69 E-value=0.00099 Score=72.38 Aligned_cols=124 Identities=19% Similarity=0.190 Sum_probs=76.3
Q ss_pred CCCcHHHHHHHHHHhc-CCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhc
Q 013858 142 TRPTSIQAQAMPVALS-GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRS 220 (435)
Q Consensus 142 ~~p~~~Q~~~i~~~~~-~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~ 220 (435)
..+++-|.+++..+.. ++-+++.|..|+|||++ +-.+...+.. .|..++.++||-..|..+.+ -
T Consensus 380 ~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~--l~~~~~~~e~------~G~~V~g~ApTgkAA~~L~e----~--- 444 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTM--MKAAREAWEA------AGYRVVGGALAGKAAEGLEK----E--- 444 (1102)
T ss_pred CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHH--HHHHHHHHHH------cCCeEEEEcCcHHHHHHHHH----h---
Confidence 4689999999998864 45599999999999985 3334343432 26779999999766554422 1
Q ss_pred CCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCCCHHHHHHHHHhCC-C
Q 013858 221 LDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLP-D 299 (435)
Q Consensus 221 ~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~-~ 299 (435)
. ++.. .|...++.....+...+..-++||||||..+. ...+..++.... .
T Consensus 445 ~-Gi~a------------------------~TIas~ll~~~~~~~~l~~~~vlVIDEAsMv~----~~~m~~Ll~~~~~~ 495 (1102)
T PRK13826 445 A-GIQS------------------------RTLSSWELRWNQGRDQLDNKTVFVLDEAGMVA----SRQMALFVEAVTRA 495 (1102)
T ss_pred h-CCCe------------------------eeHHHHHhhhccCccCCCCCcEEEEECcccCC----HHHHHHHHHHHHhc
Confidence 1 1221 12222211111223346677899999999552 234455555553 4
Q ss_pred CCeEEEEccc
Q 013858 300 KHQTLLFSAT 309 (435)
Q Consensus 300 ~~q~i~~SAT 309 (435)
..++|++-=+
T Consensus 496 garvVLVGD~ 505 (1102)
T PRK13826 496 GAKLVLVGDP 505 (1102)
T ss_pred CCEEEEECCH
Confidence 6777777543
No 200
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.56 E-value=0.0011 Score=54.88 Aligned_cols=17 Identities=35% Similarity=0.516 Sum_probs=15.2
Q ss_pred CCCEEEEccCCCchhHH
Q 013858 158 GRDLLGCAETGSGKTAA 174 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~ 174 (435)
++.+++.|++|+|||..
T Consensus 19 ~~~v~i~G~~G~GKT~l 35 (151)
T cd00009 19 PKNLLLYGPPGTGKTTL 35 (151)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 56799999999999974
No 201
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.55 E-value=0.0086 Score=69.92 Aligned_cols=237 Identities=13% Similarity=0.181 Sum_probs=125.9
Q ss_pred CCcHHHHHHHHHHhcC--CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhc
Q 013858 143 RPTSIQAQAMPVALSG--RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRS 220 (435)
Q Consensus 143 ~p~~~Q~~~i~~~~~~--~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~ 220 (435)
.+++-|++++..++.. +-.+|.|+.|+|||++ +-.+..++.. .|..+++++||-..+..+.+.....+..
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~--l~~l~~~~~~------~G~~V~~lAPTgrAA~~L~e~~g~~A~T 500 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI--AQLLLHLASE------QGYEIQIITAGSLSAQELRQKIPRLAST 500 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH--HHHHHHHHHh------cCCeEEEEeCCHHHHHHHHHHhcchhhh
Confidence 5788999999999875 4599999999999984 4444444442 2678999999987766554432111100
Q ss_pred CCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCCCHHHHHHHHHhC-CC
Q 013858 221 LDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PD 299 (435)
Q Consensus 221 ~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~-~~ 299 (435)
.......+.. ..-..|...++ .....+...++||||||-.+. ...+..++... +.
T Consensus 501 --------------i~~~l~~l~~--~~~~~tv~~fl----~~~~~l~~~~vlIVDEAsMl~----~~~~~~Ll~~a~~~ 556 (1960)
T TIGR02760 501 --------------FITWVKNLFN--DDQDHTVQGLL----DKSSPFSNKDIFVVDEANKLS----NNELLKLIDKAEQH 556 (1960)
T ss_pred --------------HHHHHHhhcc--cccchhHHHhh----cccCCCCCCCEEEEECCCCCC----HHHHHHHHHHHhhc
Confidence 0000000111 11122333333 223345678999999999652 34555566544 45
Q ss_pred CCeEEEEccc--ccH----HHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCC
Q 013858 300 KHQTLLFSAT--MPV----EIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHP 373 (435)
Q Consensus 300 ~~q~i~~SAT--l~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~ 373 (435)
..|+|++-=+ ++. ..-..+... +-+ .+.+.........+ .+.......+...+.+.+..... .
T Consensus 557 garvVlvGD~~QL~sV~aG~~f~~L~~~-gv~-t~~l~~i~rq~~~v--~i~~~~~~~r~~~ia~~y~~L~~-------~ 625 (1960)
T TIGR02760 557 NSKLILLNDSAQRQGMSAGSAIDLLKEG-GVT-TYAWVDTKQQKASV--EISEAVDKLRVDYIASAWLDLTP-------D 625 (1960)
T ss_pred CCEEEEEcChhhcCccccchHHHHHHHC-CCc-EEEeecccccCcce--eeeccCchHHHHHHHHHHHhccc-------c
Confidence 6788877543 221 222222321 112 11222111111112 12222334444455555443221 1
Q ss_pred CCcEEEEeCchHHHHHHHHHHHh----CC------CcEEEec-CCCCHHHHHHHHHHHHcC
Q 013858 374 FPLTIVFVERKTRCDEVSEALVA----EG------LHAVALH-GGRNQSDRESALRDFRNG 423 (435)
Q Consensus 374 ~~~~lVF~~~~~~~~~l~~~L~~----~~------~~v~~lh-~~~~~~~R~~~~~~f~~g 423 (435)
...++|+..+.++...|...++. .| +.+..|. ..++..++... ..|+.|
T Consensus 626 r~~tliv~~t~~dr~~Ln~~iR~~L~~~G~L~~~~~~~~~L~p~~lt~~e~r~~-~~Yr~G 685 (1960)
T TIGR02760 626 RQNSQVLATTHREQQDLTQIIRNALKQEGQLSRQEVTVPTLKPVNLTGIQRRNA-AHYKQG 685 (1960)
T ss_pred cCceEEEcCCcHHHHHHHHHHHHHHHHcCCcCCCceEEEEeccCCCCHHHHhhH-hhcCCC
Confidence 12489999998888888777754 22 2333443 35777777643 555544
No 202
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.54 E-value=0.00027 Score=67.18 Aligned_cols=123 Identities=23% Similarity=0.181 Sum_probs=71.9
Q ss_pred CcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcCCC
Q 013858 144 PTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDS 223 (435)
Q Consensus 144 p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~~~ 223 (435)
+++-|.+++.. .+.+++|.|..|||||++.+--+. +++.... ....++|++++|+.+|..+..++........
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~-~ll~~~~---~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~- 73 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIA-YLLYEGG---VPPERILVLTFTNAAAQEMRERIRELLEEEQ- 73 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHH-HHHHTSS---STGGGEEEEESSHHHHHHHHHHHHHHHHHCC-
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHH-Hhhcccc---CChHHheecccCHHHHHHHHHHHHHhcCccc-
Confidence 36778888888 777899999999999997644443 4333321 2246799999999999999999987654321
Q ss_pred ceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCC--CCceEEEEecCC
Q 013858 224 FKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSL--SRVSFVILDEAD 279 (435)
Q Consensus 224 ~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l--~~~~~iIiDEah 279 (435)
.. ................+.|+|...+...+.+..... -.-.+-|+|+..
T Consensus 74 ~~------~~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 74 QE------SSDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp HC------CTT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred cc------ccccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 00 000001111122234688889887765443321111 112455666665
No 203
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.52 E-value=0.0029 Score=60.73 Aligned_cols=132 Identities=17% Similarity=0.208 Sum_probs=75.2
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcc-ChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHH
Q 013858 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAP-TRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIA 236 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P-~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~ 236 (435)
++.+.+.||||.|||++..=-+..+.... .....+||.+. .|.-|..+ ++.+++-+ ++
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~-----~~~kVaiITtDtYRIGA~EQ---Lk~Ya~im-~v------------ 261 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLK-----KKKKVAIITTDTYRIGAVEQ---LKTYADIM-GV------------ 261 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhc-----cCcceEEEEeccchhhHHHH---HHHHHHHh-CC------------
Confidence 67899999999999986432222332111 11334555554 34444333 33333222 11
Q ss_pred HHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCC-CCHHHHHHHHHhCCCCCeEEEEccccc-HHH
Q 013858 237 EQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDM-GFEPQIREVMQNLPDKHQTLLFSATMP-VEI 314 (435)
Q Consensus 237 ~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~-~~~~~i~~i~~~~~~~~q~i~~SATl~-~~~ 314 (435)
+=.++-+|.-|...+. .+.++++|.||=+=|.... -....+..+.....+-.-.+.+|||.. .++
T Consensus 262 ---------p~~vv~~~~el~~ai~----~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dl 328 (407)
T COG1419 262 ---------PLEVVYSPKELAEAIE----ALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDL 328 (407)
T ss_pred ---------ceEEecCHHHHHHHHH----HhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHH
Confidence 1234456766766665 3677899999988765322 133455555555544445688899974 456
Q ss_pred HHHHHHHcC
Q 013858 315 EALAQEYLT 323 (435)
Q Consensus 315 ~~~~~~~~~ 323 (435)
.+....|-.
T Consensus 329 kei~~~f~~ 337 (407)
T COG1419 329 KEIIKQFSL 337 (407)
T ss_pred HHHHHHhcc
Confidence 666666643
No 204
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.51 E-value=0.0019 Score=63.87 Aligned_cols=129 Identities=17% Similarity=0.225 Sum_probs=67.0
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEc--cChhhHHHHHHHHHHHhhcCCCceEEEEECCCCH
Q 013858 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA--PTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNI 235 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~--P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~ 235 (435)
++.++++||||+|||++..--+........ +.++.++. |.|..+... ++.++... ++.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~------g~~V~li~~D~~r~~a~eq---L~~~a~~~-~vp~--------- 281 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYG------KKKVALITLDTYRIGAVEQ---LKTYAKIM-GIPV--------- 281 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcC------CCeEEEEECCccHHHHHHH---HHHHHHHh-CCce---------
Confidence 457899999999999864322222210111 33455444 445433322 33333221 1211
Q ss_pred HHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccC-CCCHHHHHHHHHhC-CCCCeEEEEcccccH-
Q 013858 236 AEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLD-MGFEPQIREVMQNL-PDKHQTLLFSATMPV- 312 (435)
Q Consensus 236 ~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~-~~~~~~i~~i~~~~-~~~~q~i~~SATl~~- 312 (435)
..+.++..+...+.. +.++++||||.+-+... ......+..++... .+....++++||...
T Consensus 282 ------------~~~~~~~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~ 345 (424)
T PRK05703 282 ------------EVVYDPKELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYE 345 (424)
T ss_pred ------------EccCCHHhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHH
Confidence 112344455555542 34689999999975422 11233455555522 233447889998854
Q ss_pred HHHHHHHHH
Q 013858 313 EIEALAQEY 321 (435)
Q Consensus 313 ~~~~~~~~~ 321 (435)
.+...++.|
T Consensus 346 ~l~~~~~~f 354 (424)
T PRK05703 346 DLKDIYKHF 354 (424)
T ss_pred HHHHHHHHh
Confidence 555556666
No 205
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.50 E-value=0.00068 Score=69.99 Aligned_cols=39 Identities=26% Similarity=0.274 Sum_probs=30.5
Q ss_pred CCCcHHHHHHHHHHhc----CCCEEEEccCCCchhHHhHHHHH
Q 013858 142 TRPTSIQAQAMPVALS----GRDLLGCAETGSGKTAAFTIPMI 180 (435)
Q Consensus 142 ~~p~~~Q~~~i~~~~~----~~~vii~~~TGsGKT~~~~~~~l 180 (435)
..|++.|...+..+++ ..+.++..|||+|||++.+=..|
T Consensus 20 ~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~L 62 (945)
T KOG1132|consen 20 FQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTL 62 (945)
T ss_pred CCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHH
Confidence 4679999998888773 56899999999999986543333
No 206
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.49 E-value=0.00027 Score=68.72 Aligned_cols=59 Identities=25% Similarity=0.279 Sum_probs=43.4
Q ss_pred CcHHHHHHHHHH------hcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHH
Q 013858 144 PTSIQAQAMPVA------LSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQI 210 (435)
Q Consensus 144 p~~~Q~~~i~~~------~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~ 210 (435)
+.+-|+.++..+ ..+.++++.|+-|+|||+. +-.+...... .+..+++++||-..|..+
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l--~~~i~~~~~~------~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFL--IKAIIDYLRS------RGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHH--HHHHHHHhcc------ccceEEEecchHHHHHhc
Confidence 456788888887 5677899999999999984 4444433332 256799999998776655
No 207
>PRK08181 transposase; Validated
Probab=97.49 E-value=0.0015 Score=60.40 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=18.1
Q ss_pred HHhcCCCEEEEccCCCchhHHh
Q 013858 154 VALSGRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 154 ~~~~~~~vii~~~TGsGKT~~~ 175 (435)
++..+++++++||+|+|||..+
T Consensus 102 ~~~~~~nlll~Gp~GtGKTHLa 123 (269)
T PRK08181 102 WLAKGANLLLFGPPGGGKSHLA 123 (269)
T ss_pred HHhcCceEEEEecCCCcHHHHH
Confidence 3447789999999999999743
No 208
>PRK06526 transposase; Provisional
Probab=97.47 E-value=0.00079 Score=61.79 Aligned_cols=23 Identities=17% Similarity=0.193 Sum_probs=18.8
Q ss_pred HHHhcCCCEEEEccCCCchhHHh
Q 013858 153 PVALSGRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 153 ~~~~~~~~vii~~~TGsGKT~~~ 175 (435)
.++..+.+++++||+|+|||..+
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa 115 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLA 115 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHH
Confidence 34446789999999999999854
No 209
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.44 E-value=0.00044 Score=56.77 Aligned_cols=41 Identities=22% Similarity=0.243 Sum_probs=25.0
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhh
Q 013858 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL 206 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~l 206 (435)
+..+++.||+|+|||+.. -.+....... +..++++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~--~~l~~~~~~~------~~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTLA--RALARELGPP------GGGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHHH--HHHHhccCCC------CCCEEEECCEEcc
Confidence 567999999999999853 2333322211 1247777765443
No 210
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.38 E-value=0.0027 Score=58.14 Aligned_cols=52 Identities=29% Similarity=0.388 Sum_probs=37.3
Q ss_pred CCCCCCCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCC-EEEEccCCCchhHHhHHHHHHHHHhc
Q 013858 115 PAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRD-LLGCAETGSGKTAAFTIPMIQHCVAQ 186 (435)
Q Consensus 115 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~-vii~~~TGsGKT~~~~~~~l~~~~~~ 186 (435)
.+|..+.+|+++++|+-+.+.+. ..+. |++.||||||||++ +..++.++...
T Consensus 100 ~Ip~~i~~~e~LglP~i~~~~~~-------------------~~~GLILVTGpTGSGKSTT-lAamId~iN~~ 152 (353)
T COG2805 100 LIPSKIPTLEELGLPPIVRELAE-------------------SPRGLILVTGPTGSGKSTT-LAAMIDYINKH 152 (353)
T ss_pred ccCccCCCHHHcCCCHHHHHHHh-------------------CCCceEEEeCCCCCcHHHH-HHHHHHHHhcc
Confidence 56777888888888877766331 2222 89999999999986 46677776553
No 211
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=97.27 E-value=0.00068 Score=61.45 Aligned_cols=86 Identities=27% Similarity=0.376 Sum_probs=67.0
Q ss_pred CCCeEEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCC-CHHHHHHHHh-CCCcEEEECcHHHHHHHHcCCCCCCCc
Q 013858 193 DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGT-NIAEQRSELR-GGVSIVVATPGRFLDHLQQGNTSLSRV 270 (435)
Q Consensus 193 ~~~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~-~~~~I~v~T~~~l~~~l~~~~~~l~~~ 270 (435)
..|.+|||+..-.-|..+.+.++.|.. .+..++-++.-. ...++...+. ..++|.|+||+++..++..+.+.+.++
T Consensus 125 gsP~~lvvs~SalRa~dl~R~l~~~~~--k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l 202 (252)
T PF14617_consen 125 GSPHVLVVSSSALRAADLIRALRSFKG--KDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNL 202 (252)
T ss_pred CCCEEEEEcchHHHHHHHHHHHHhhcc--CCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccC
Confidence 368999999988778888888877731 134455566554 4566666665 468999999999999999999999999
Q ss_pred eEEEEecCCc
Q 013858 271 SFVILDEADR 280 (435)
Q Consensus 271 ~~iIiDEah~ 280 (435)
.+||||--|+
T Consensus 203 ~~ivlD~s~~ 212 (252)
T PF14617_consen 203 KRIVLDWSYL 212 (252)
T ss_pred eEEEEcCCcc
Confidence 9999998763
No 212
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.25 E-value=0.00073 Score=66.93 Aligned_cols=143 Identities=21% Similarity=0.238 Sum_probs=69.9
Q ss_pred EEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHH-HhhcCCCceEEEEECCCCHHH----
Q 013858 163 GCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA-LSRSLDSFKTAIVVGGTNIAE---- 237 (435)
Q Consensus 163 i~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~-~~~~~~~~~~~~~~g~~~~~~---- 237 (435)
..++||||||++. ..++.++...+ ....|+.|...........-+.. +.... -+.-.+.+++....-
T Consensus 2 f~matgsgkt~~m-a~lil~~y~kg------yr~flffvnq~nilekt~~nftd~~s~ky-lf~e~i~~~d~~i~ikkvn 73 (812)
T COG3421 2 FEMATGSGKTLVM-AGLILECYKKG------YRNFLFFVNQANILEKTKLNFTDSVSSKY-LFSENININDENIEIKKVN 73 (812)
T ss_pred cccccCCChhhHH-HHHHHHHHHhc------hhhEEEEecchhHHHHHHhhcccchhhhH-hhhhhhhcCCceeeeeeec
Confidence 4578999999864 34444444432 24467776554443333222211 00000 011112222221110
Q ss_pred HHHHHhCCCcEEEECcHHHHHHHHcCCC------CCCCce-EEEEecCCcccCCC---------CHHHHHHHH---HhCC
Q 013858 238 QRSELRGGVSIVVATPGRFLDHLQQGNT------SLSRVS-FVILDEADRMLDMG---------FEPQIREVM---QNLP 298 (435)
Q Consensus 238 ~~~~~~~~~~I~v~T~~~l~~~l~~~~~------~l~~~~-~iIiDEah~~~~~~---------~~~~i~~i~---~~~~ 298 (435)
.......+..|+++|.+.|...+.+... .+.+.. +++-||||++-... -...|...+ ..-.
T Consensus 74 ~fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~n 153 (812)
T COG3421 74 NFSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQN 153 (812)
T ss_pred ccCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhcC
Confidence 0111334568999999999776654321 244444 45679999864310 111222221 1123
Q ss_pred CCCeEEEEcccccHH
Q 013858 299 DKHQTLLFSATMPVE 313 (435)
Q Consensus 299 ~~~q~i~~SATl~~~ 313 (435)
++.-++.+|||.|.+
T Consensus 154 kd~~~lef~at~~k~ 168 (812)
T COG3421 154 KDNLLLEFSATIPKE 168 (812)
T ss_pred CCceeehhhhcCCcc
Confidence 444578899999844
No 213
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.21 E-value=0.0052 Score=58.99 Aligned_cols=158 Identities=17% Similarity=0.200 Sum_probs=79.1
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEc--cChhhHHHHHHHHHHHhhcCCCceEEEEECCCCH
Q 013858 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA--PTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNI 235 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~--P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~ 235 (435)
++.++++||+|+|||+...--+ ..+... +.++.++. |.|.-|..+ ++.++... ++.+
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA-~~l~~~-------g~~V~lItaDtyR~gAveQ---Lk~yae~l-gvpv--------- 264 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLG-WQLLKQ-------NRTVGFITTDTFRSGAVEQ---FQGYADKL-DVEL--------- 264 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHH-HHHHHc-------CCeEEEEeCCccCccHHHH---HHHHhhcC-CCCE---------
Confidence 4568999999999998543222 222222 33454444 555543322 34444322 1211
Q ss_pred HHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCC-CCHHHHHHHHHhCCCCCeEEEEcccccH-H
Q 013858 236 AEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDM-GFEPQIREVMQNLPDKHQTLLFSATMPV-E 313 (435)
Q Consensus 236 ~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~-~~~~~i~~i~~~~~~~~q~i~~SATl~~-~ 313 (435)
....+|..+.+.+..-. ...++++|+||=+=+.... .....+..+.....+..-++.+||+... +
T Consensus 265 ------------~~~~dp~dL~~al~~l~-~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d 331 (407)
T PRK12726 265 ------------IVATSPAELEEAVQYMT-YVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSAD 331 (407)
T ss_pred ------------EecCCHHHHHHHHHHHH-hcCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcccHHH
Confidence 11235555544443211 1346789999988765322 2334455555555555546777886533 4
Q ss_pred HHHHHHHHcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHHHHH
Q 013858 314 IEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVE 362 (435)
Q Consensus 314 ~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~ 362 (435)
+...++.|-.-++ -...+..++...+...++.....
T Consensus 332 ~~~i~~~f~~l~i-------------~glI~TKLDET~~~G~~Lsv~~~ 367 (407)
T PRK12726 332 VMTILPKLAEIPI-------------DGFIITKMDETTRIGDLYTVMQE 367 (407)
T ss_pred HHHHHHhcCcCCC-------------CEEEEEcccCCCCccHHHHHHHH
Confidence 4444444421110 11233444555566666666544
No 214
>PRK05642 DNA replication initiation factor; Validated
Probab=97.20 E-value=0.00084 Score=61.03 Aligned_cols=44 Identities=23% Similarity=0.386 Sum_probs=27.8
Q ss_pred CCceEEEEecCCcccCC-CCHHHHHHHHHhCCCCCeEEEEccccc
Q 013858 268 SRVSFVILDEADRMLDM-GFEPQIREVMQNLPDKHQTLLFSATMP 311 (435)
Q Consensus 268 ~~~~~iIiDEah~~~~~-~~~~~i~~i~~~~~~~~q~i~~SATl~ 311 (435)
.+++++|||++|.+... .+...+..++..+....+.++++++.+
T Consensus 96 ~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~ 140 (234)
T PRK05642 96 EQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKS 140 (234)
T ss_pred hhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCC
Confidence 35679999999966432 344556677766554333466666653
No 215
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.16 E-value=0.0098 Score=54.96 Aligned_cols=157 Identities=15% Similarity=0.211 Sum_probs=83.4
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEc--cCh-hhHHHHHHHHHHHhhcCCCceEEEEECCC
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA--PTR-ELAQQIEKEVKALSRSLDSFKTAIVVGGT 233 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~--P~r-~la~q~~~~~~~~~~~~~~~~~~~~~g~~ 233 (435)
.+..+.++|++|+|||+.+.. +...... .+..+.++. +.| ..+.|+. .++... ++
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~--l~~~l~~------~~~~v~~i~~D~~ri~~~~ql~----~~~~~~-~~--------- 131 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAK--MAWQFHG------KKKTVGFITTDHSRIGTVQQLQ----DYVKTI-GF--------- 131 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHH--HHHHHHH------cCCeEEEEecCCCCHHHHHHHH----HHhhhc-Cc---------
Confidence 346799999999999985533 2222221 134454444 333 3444443 333221 11
Q ss_pred CHHHHHHHHhCCCcEEE-ECcHHHHHHHHcCCCCCCCceEEEEecCCcccCC-CCHHHHHHHHHhCCCCCeEEEEcccc-
Q 013858 234 NIAEQRSELRGGVSIVV-ATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDM-GFEPQIREVMQNLPDKHQTLLFSATM- 310 (435)
Q Consensus 234 ~~~~~~~~~~~~~~I~v-~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~-~~~~~i~~i~~~~~~~~q~i~~SATl- 310 (435)
.+.. .++..+.+.+.. .....++++||||-+=++... .....+..++....+..-++.+|||.
T Consensus 132 -------------~~~~~~~~~~l~~~l~~-l~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~ 197 (270)
T PRK06731 132 -------------EVIAVRDEAAMTRALTY-FKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK 197 (270)
T ss_pred -------------eEEecCCHHHHHHHHHH-HHhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC
Confidence 1222 244445444322 111246899999999765422 23344555555555555577899986
Q ss_pred cHHHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHHHHH
Q 013858 311 PVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVE 362 (435)
Q Consensus 311 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~ 362 (435)
..++...++.|-.-++ -...+..+....+...++.....
T Consensus 198 ~~d~~~~~~~f~~~~~-------------~~~I~TKlDet~~~G~~l~~~~~ 236 (270)
T PRK06731 198 SKDMIEIITNFKDIHI-------------DGIVFTKFDETASSGELLKIPAV 236 (270)
T ss_pred HHHHHHHHHHhCCCCC-------------CEEEEEeecCCCCccHHHHHHHH
Confidence 4577777777742110 12234445555566666666544
No 216
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.14 E-value=0.0073 Score=59.29 Aligned_cols=132 Identities=13% Similarity=0.104 Sum_probs=65.2
Q ss_pred CEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEc--cChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHH
Q 013858 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA--PTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAE 237 (435)
Q Consensus 160 ~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~--P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 237 (435)
.+.++|++|+|||++..- +-.++... |.+++++. +.|..|..+.+. ++... ++.+....++.....
T Consensus 102 vi~lvG~~GvGKTTtaaK-LA~~l~~~-------G~kV~lV~~D~~R~aA~eQLk~---~a~~~-~vp~~~~~~~~dp~~ 169 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTK-LAYYYQRK-------GFKPCLVCADTFRAGAFDQLKQ---NATKA-RIPFYGSYTESDPVK 169 (429)
T ss_pred EEEEECCCCCCHHHHHHH-HHHHHHHC-------CCCEEEEcCcccchhHHHHHHH---Hhhcc-CCeEEeecCCCCHHH
Confidence 488999999999985422 22222221 34566555 566665555333 33222 233322222221110
Q ss_pred HHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCC-CCHHHHHHHHHhCCCCCeEEEEcccccHHHHH
Q 013858 238 QRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDM-GFEPQIREVMQNLPDKHQTLLFSATMPVEIEA 316 (435)
Q Consensus 238 ~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~-~~~~~i~~i~~~~~~~~q~i~~SATl~~~~~~ 316 (435)
...+.+.. ..-..+++||||=+-|+... .....+..+.....+..-++.++||.......
T Consensus 170 -----------------i~~~~l~~--~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~ 230 (429)
T TIGR01425 170 -----------------IASEGVEK--FKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEA 230 (429)
T ss_pred -----------------HHHHHHHH--HHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHH
Confidence 00011111 01134677888877654321 23344555554555555567778877655555
Q ss_pred HHHHHc
Q 013858 317 LAQEYL 322 (435)
Q Consensus 317 ~~~~~~ 322 (435)
.++.|.
T Consensus 231 ~a~~F~ 236 (429)
T TIGR01425 231 QAKAFK 236 (429)
T ss_pred HHHHHH
Confidence 556553
No 217
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.11 E-value=0.014 Score=58.50 Aligned_cols=157 Identities=17% Similarity=0.227 Sum_probs=75.8
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEE-c-cChhhHHHHHHHHHHHhhcCCCceEEEEECCCC
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL-A-PTRELAQQIEKEVKALSRSLDSFKTAIVVGGTN 234 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil-~-P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~ 234 (435)
.|+.+.++|+||+|||+....-+. .+... ..+.++.++ + +.|..+.. .++.++... ++.+.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa-~la~~-----~~gkkVaLIdtDtyRigA~E---QLk~ya~iL-gv~v~------- 411 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQ-RFAAQ-----HAPRDVALVTTDTQRVGGRE---QLHSYGRQL-GIAVH------- 411 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH-HHHHh-----cCCCceEEEecccccccHHH---HHHHhhccc-CceeE-------
Confidence 466799999999999986422222 22211 112234443 3 33443332 233333221 11111
Q ss_pred HHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCC-CHHHHHHHHHhCCCCCeEEEEccccc-H
Q 013858 235 IAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG-FEPQIREVMQNLPDKHQTLLFSATMP-V 312 (435)
Q Consensus 235 ~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~-~~~~i~~i~~~~~~~~q~i~~SATl~-~ 312 (435)
...+++.+...+.. +.++++||||.+-+..... ....+..+... .....+++++++.. .
T Consensus 412 --------------~a~d~~~L~~aL~~----l~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa-~~~a~lLVLpAtss~~ 472 (559)
T PRK12727 412 --------------EADSAESLLDLLER----LRDYKLVLIDTAGMGQRDRALAAQLNWLRAA-RQVTSLLVLPANAHFS 472 (559)
T ss_pred --------------ecCcHHHHHHHHHH----hccCCEEEecCCCcchhhHHHHHHHHHHHHh-hcCCcEEEEECCCChh
Confidence 01133445444432 3468999999997542211 12223333222 23345778888874 3
Q ss_pred HHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHHHHH
Q 013858 313 EIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVE 362 (435)
Q Consensus 313 ~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~ 362 (435)
++...++.|-... ...-.+.++....+...++..+..
T Consensus 473 Dl~eii~~f~~~~-------------~~gvILTKlDEt~~lG~aLsv~~~ 509 (559)
T PRK12727 473 DLDEVVRRFAHAK-------------PQGVVLTKLDETGRFGSALSVVVD 509 (559)
T ss_pred HHHHHHHHHHhhC-------------CeEEEEecCcCccchhHHHHHHHH
Confidence 5555566653211 011233344555566666666644
No 218
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.10 E-value=0.0083 Score=62.85 Aligned_cols=130 Identities=18% Similarity=0.136 Sum_probs=69.6
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEc-c-ChhhHHHHHHHHHHHhhcCCCceEEEEECCCCH
Q 013858 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA-P-TRELAQQIEKEVKALSRSLDSFKTAIVVGGTNI 235 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~-P-~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~ 235 (435)
++.+.++||||+|||+++..-+-.+....+ +.++.++. . .|.-+. +.++.++... ++.+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G------~kkV~lit~Dt~RigA~---eQL~~~a~~~-gvpv--------- 245 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREG------ADQLALLTTDSFRIGAL---EQLRIYGRIL-GVPV--------- 245 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcC------CCeEEEecCcccchHHH---HHHHHHHHhC-CCCc---------
Confidence 345889999999999864332222211211 12444443 3 333332 2344444322 1111
Q ss_pred HHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCC-CCHHHHHHHHHhCCCCCeEEEEccccc-HH
Q 013858 236 AEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDM-GFEPQIREVMQNLPDKHQTLLFSATMP-VE 313 (435)
Q Consensus 236 ~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~-~~~~~i~~i~~~~~~~~q~i~~SATl~-~~ 313 (435)
.++.+|..+.+.+.. +.++++|+||=+=|+... .....+..+.....+...++.++||.. ..
T Consensus 246 ------------~~~~~~~~l~~al~~----~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~ 309 (767)
T PRK14723 246 ------------HAVKDAADLRFALAA----LGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDT 309 (767)
T ss_pred ------------cccCCHHHHHHHHHH----hcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHH
Confidence 123366666555543 446789999999876432 233344444444445556788899874 44
Q ss_pred HHHHHHHHc
Q 013858 314 IEALAQEYL 322 (435)
Q Consensus 314 ~~~~~~~~~ 322 (435)
+.+.++.|-
T Consensus 310 l~~i~~~f~ 318 (767)
T PRK14723 310 LNEVVHAYR 318 (767)
T ss_pred HHHHHHHHh
Confidence 555666663
No 219
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=97.07 E-value=0.0013 Score=70.42 Aligned_cols=152 Identities=17% Similarity=0.080 Sum_probs=91.1
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhcC----------CCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcCCCceE
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQT----------PVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKT 226 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~----------~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~ 226 (435)
.|+.+++.-.+|+|||..-+.-.+...-... .......+-.|||+|. ++..||..++..-... .+++
T Consensus 373 ~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~--~lKv 449 (1394)
T KOG0298|consen 373 HGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISS--LLKV 449 (1394)
T ss_pred CCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhccc--cceE
Confidence 5677899999999999865433322211100 0011123568999998 7778998888776644 3577
Q ss_pred EEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCC------------------CCC--ceEEEEecCCcccCCCC
Q 013858 227 AIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTS------------------LSR--VSFVILDEADRMLDMGF 286 (435)
Q Consensus 227 ~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~------------------l~~--~~~iIiDEah~~~~~~~ 286 (435)
...+|-....-....-.-.+||++||+..|...+...... |-. +=-|++|||+.+ .. -
T Consensus 450 ~~Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMv-es-s 527 (1394)
T KOG0298|consen 450 LLYFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMV-ES-S 527 (1394)
T ss_pred EEEechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhh-cc-h
Confidence 7777754322111122235899999999998777654111 111 222899999954 32 2
Q ss_pred HHHHHHHHHhCCCCCeEEEEcccccHHH
Q 013858 287 EPQIREVMQNLPDKHQTLLFSATMPVEI 314 (435)
Q Consensus 287 ~~~i~~i~~~~~~~~q~i~~SATl~~~~ 314 (435)
.....+.+.+++... ....|.|+-..+
T Consensus 528 sS~~a~M~~rL~~in-~W~VTGTPiq~I 554 (1394)
T KOG0298|consen 528 SSAAAEMVRRLHAIN-RWCVTGTPIQKI 554 (1394)
T ss_pred HHHHHHHHHHhhhhc-eeeecCCchhhh
Confidence 344455555554322 588899964333
No 220
>PHA02533 17 large terminase protein; Provisional
Probab=97.04 E-value=0.0066 Score=61.77 Aligned_cols=150 Identities=15% Similarity=0.123 Sum_probs=87.4
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcC
Q 013858 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (435)
Q Consensus 142 ~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~ 221 (435)
..|.|+|+..+..+..++-.++..+=..|||++....++...... .+..+++++|++.-|..+.+.++.+....
T Consensus 58 f~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~------~~~~v~i~A~~~~QA~~vF~~ik~~ie~~ 131 (534)
T PHA02533 58 VQMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFN------KDKNVGILAHKASMAAEVLDRTKQAIELL 131 (534)
T ss_pred cCCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhC------CCCEEEEEeCCHHHHHHHHHHHHHHHHhC
Confidence 357899999988876666667778888999997654444333322 14689999999999999988888776654
Q ss_pred CCce-EEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCCCHHHHHHHHHhCCC-
Q 013858 222 DSFK-TAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPD- 299 (435)
Q Consensus 222 ~~~~-~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~- 299 (435)
+.+. ..+..... ....+.++..|.+.|.+. +...=...+++|+||+|.+.+ +...+..+...+..
T Consensus 132 P~l~~~~i~~~~~----~~I~l~NGS~I~~lss~~-------~t~rG~~~~~liiDE~a~~~~--~~e~~~ai~p~lasg 198 (534)
T PHA02533 132 PDFLQPGIVEWNK----GSIELENGSKIGAYASSP-------DAVRGNSFAMIYIDECAFIPN--FIDFWLAIQPVISSG 198 (534)
T ss_pred HHHhhcceeecCc----cEEEeCCCCEEEEEeCCC-------CccCCCCCceEEEeccccCCC--HHHHHHHHHHHHHcC
Confidence 4321 11111100 011124556665555321 111122467899999996543 23334444333322
Q ss_pred -CCeEEEEcccc
Q 013858 300 -KHQTLLFSATM 310 (435)
Q Consensus 300 -~~q~i~~SATl 310 (435)
..+++++|.+.
T Consensus 199 ~~~r~iiiSTp~ 210 (534)
T PHA02533 199 RSSKIIITSTPN 210 (534)
T ss_pred CCceEEEEECCC
Confidence 23455555543
No 221
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.03 E-value=0.012 Score=57.41 Aligned_cols=126 Identities=15% Similarity=0.179 Sum_probs=65.7
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEc--cChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHH
Q 013858 159 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA--PTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIA 236 (435)
Q Consensus 159 ~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~--P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~ 236 (435)
..++++||+|+|||+...--+..+.... |.++.++. +.|..+..+ ++.++... ++....
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~-------G~~V~Lit~Dt~R~aA~eQ---Lk~yAe~l-gvp~~~-------- 284 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHM-------GKSVSLYTTDNYRIAAIEQ---LKRYADTM-GMPFYP-------- 284 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhc-------CCeEEEecccchhhhHHHH---HHHHHHhc-CCCeee--------
Confidence 3488999999999986533222222221 33454444 556655543 33333222 121110
Q ss_pred HHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCccc-CCCCHHHHHHHHHhCC---CCCeEEEEcccccH
Q 013858 237 EQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRML-DMGFEPQIREVMQNLP---DKHQTLLFSATMPV 312 (435)
Q Consensus 237 ~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~-~~~~~~~i~~i~~~~~---~~~q~i~~SATl~~ 312 (435)
+..+..+...+. -.++++||||=+-+.. +......+..++.... +.-.++.++||...
T Consensus 285 -------------~~~~~~l~~~l~-----~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~ 346 (432)
T PRK12724 285 -------------VKDIKKFKETLA-----RDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY 346 (432)
T ss_pred -------------hHHHHHHHHHHH-----hCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH
Confidence 011223333332 1467899999877552 2223345555555432 22357888999866
Q ss_pred -HHHHHHHHH
Q 013858 313 -EIEALAQEY 321 (435)
Q Consensus 313 -~~~~~~~~~ 321 (435)
.+...++.|
T Consensus 347 ~~~~~~~~~f 356 (432)
T PRK12724 347 HHTLTVLKAY 356 (432)
T ss_pred HHHHHHHHHh
Confidence 555555555
No 222
>PRK08116 hypothetical protein; Validated
Probab=97.02 E-value=0.024 Score=52.55 Aligned_cols=49 Identities=14% Similarity=0.207 Sum_probs=28.0
Q ss_pred CCCceEEEEecCCcccCCC-CHHHHHHHHHhC-CCCCeEEEEcccccHHHH
Q 013858 267 LSRVSFVILDEADRMLDMG-FEPQIREVMQNL-PDKHQTLLFSATMPVEIE 315 (435)
Q Consensus 267 l~~~~~iIiDEah~~~~~~-~~~~i~~i~~~~-~~~~q~i~~SATl~~~~~ 315 (435)
+.++++|||||++.....+ ....+..++... .....+|+.|-..|.++.
T Consensus 176 l~~~dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~~~eL~ 226 (268)
T PRK08116 176 LVNADLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLSLEELK 226 (268)
T ss_pred hcCCCEEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHH
Confidence 3467899999997322222 233444555543 344557777766665554
No 223
>PRK06893 DNA replication initiation factor; Validated
Probab=96.98 E-value=0.0019 Score=58.58 Aligned_cols=47 Identities=21% Similarity=0.346 Sum_probs=28.4
Q ss_pred CCCceEEEEecCCcccC-CCCHHHHHHHHHhCCC-CCeEEEEcccccHH
Q 013858 267 LSRVSFVILDEADRMLD-MGFEPQIREVMQNLPD-KHQTLLFSATMPVE 313 (435)
Q Consensus 267 l~~~~~iIiDEah~~~~-~~~~~~i~~i~~~~~~-~~q~i~~SATl~~~ 313 (435)
+.++++|||||+|.+.. ..+...+..++..... ..+++++|++.++.
T Consensus 89 ~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~ 137 (229)
T PRK06893 89 LEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPH 137 (229)
T ss_pred cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChH
Confidence 34678999999997643 2233345555554433 34566777776433
No 224
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.96 E-value=0.0072 Score=68.07 Aligned_cols=62 Identities=24% Similarity=0.276 Sum_probs=44.4
Q ss_pred CCcHHHHHHHHHHhcC--CCEEEEccCCCchhHHhH--HHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHH
Q 013858 143 RPTSIQAQAMPVALSG--RDLLGCAETGSGKTAAFT--IPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQI 210 (435)
Q Consensus 143 ~p~~~Q~~~i~~~~~~--~~vii~~~TGsGKT~~~~--~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~ 210 (435)
.+++-|++++..++.+ +-++|.|..|+|||++.. +.++..+.. ..+..++.++||-..+..+
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e------~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPE------SERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhh------ccCceEEEEechHHHHHHH
Confidence 6899999999999965 569999999999998531 122222211 1256788899997766554
No 225
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.96 E-value=0.0021 Score=58.53 Aligned_cols=17 Identities=12% Similarity=0.235 Sum_probs=14.8
Q ss_pred CCCEEEEccCCCchhHH
Q 013858 158 GRDLLGCAETGSGKTAA 174 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~ 174 (435)
+..++++||+|+|||..
T Consensus 45 ~~~l~l~Gp~G~GKThL 61 (235)
T PRK08084 45 SGYIYLWSREGAGRSHL 61 (235)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 45799999999999974
No 226
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.94 E-value=0.018 Score=52.44 Aligned_cols=48 Identities=21% Similarity=0.344 Sum_probs=27.8
Q ss_pred CCCceEEEEecCCcccCCCCHH-HHHHHHHhC-CCCCeEEEEcccccHHH
Q 013858 267 LSRVSFVILDEADRMLDMGFEP-QIREVMQNL-PDKHQTLLFSATMPVEI 314 (435)
Q Consensus 267 l~~~~~iIiDEah~~~~~~~~~-~i~~i~~~~-~~~~q~i~~SATl~~~~ 314 (435)
+.++++|||||++......+.. .+..|+..- .....+|+.|---+.++
T Consensus 160 l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l 209 (244)
T PRK07952 160 LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEM 209 (244)
T ss_pred hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHH
Confidence 4478899999999655444443 334455432 23455666665544443
No 227
>PRK08727 hypothetical protein; Validated
Probab=96.94 E-value=0.0049 Score=55.97 Aligned_cols=47 Identities=17% Similarity=0.130 Sum_probs=26.1
Q ss_pred CCceEEEEecCCcccCCC-CHHHHHHHHHhCCC-CCeEEEEcccccHHH
Q 013858 268 SRVSFVILDEADRMLDMG-FEPQIREVMQNLPD-KHQTLLFSATMPVEI 314 (435)
Q Consensus 268 ~~~~~iIiDEah~~~~~~-~~~~i~~i~~~~~~-~~q~i~~SATl~~~~ 314 (435)
.++++|||||+|.+.... ....+..++..... ..++|+.|-..|..+
T Consensus 92 ~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l 140 (233)
T PRK08727 92 EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGL 140 (233)
T ss_pred hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhh
Confidence 456799999999775432 22334444444322 344555555555544
No 228
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=96.93 E-value=0.0051 Score=63.84 Aligned_cols=140 Identities=19% Similarity=0.199 Sum_probs=82.2
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHHhcCC--CCCCCCCeEEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHH
Q 013858 159 RDLLGCAETGSGKTAAFTIPMIQHCVAQTP--VGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIA 236 (435)
Q Consensus 159 ~~vii~~~TGsGKT~~~~~~~l~~~~~~~~--~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~ 236 (435)
+..|+....|-|||... +.++........ .........||+||+ .+..||..++.+..+. ..+.+.+.+| ..
T Consensus 153 ~ggIladd~glgkt~~t-i~l~l~~~~~~~~~~~~~~~kttLivcp~-s~~~qW~~elek~~~~-~~l~v~v~~g---r~ 226 (674)
T KOG1001|consen 153 RGGILADDMGLGKTVKT-IALILKQKLKSKEEDRQKEFKTTLIVCPT-SLLTQWKTELEKVTEE-DKLSIYVYHG---RT 226 (674)
T ss_pred ccceEeeccccchHHHH-HHHHHhcccCCcchhhccccCceeEecch-HHHHHHHHHHhccCCc-cceEEEEecc---cc
Confidence 35899999999999764 333332211111 001234568999998 6678898888554433 2455555555 11
Q ss_pred HHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEcccccH
Q 013858 237 EQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPV 312 (435)
Q Consensus 237 ~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SATl~~ 312 (435)
.... .....+|+++||+.+-. ..+..-.+-.||+||||.+.+.... .-.....+.... ...+|+|+-.
T Consensus 227 kd~~-el~~~dVVltTy~il~~----~~l~~i~w~Riildea~~ikn~~tq--~~~a~~~L~a~~-RWcLtgtPiq 294 (674)
T KOG1001|consen 227 KDKS-ELNSYDVVLTTYDILKN----SPLVKIKWLRIVLDEAHTIKNKDTQ--IFKAVCQLDAKY-RWCLTGTPIQ 294 (674)
T ss_pred cccc-hhcCCceEEeeHHHhhc----ccccceeEEEEEeccccccCCcchH--hhhhheeeccce-eeeecCChhh
Confidence 1111 23457899999998853 1222245667999999988776432 222222333333 3667888743
No 229
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.92 E-value=0.02 Score=56.67 Aligned_cols=53 Identities=17% Similarity=0.271 Sum_probs=33.2
Q ss_pred ceEEEEecCCcccC-CCCHHHHHHHHHhCCCCCeEEEEcccccHHHHHHHHHHc
Q 013858 270 VSFVILDEADRMLD-MGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYL 322 (435)
Q Consensus 270 ~~~iIiDEah~~~~-~~~~~~i~~i~~~~~~~~q~i~~SATl~~~~~~~~~~~~ 322 (435)
+++||||.+-++.. ......+..+.....++.-++.++|+...+....++.|.
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~F~ 229 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAFH 229 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHHHH
Confidence 47899999965432 223345555655555666677888887666555566654
No 230
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.92 E-value=0.0095 Score=56.80 Aligned_cols=48 Identities=10% Similarity=0.201 Sum_probs=27.7
Q ss_pred CCCceEEEEecCCcccCCCC-HHHHHHHHHhCC-CCCeEEEEcccccHHH
Q 013858 267 LSRVSFVILDEADRMLDMGF-EPQIREVMQNLP-DKHQTLLFSATMPVEI 314 (435)
Q Consensus 267 l~~~~~iIiDEah~~~~~~~-~~~i~~i~~~~~-~~~q~i~~SATl~~~~ 314 (435)
+.++++||||+.+......+ ...+..++.... ...++|+.|--.+.++
T Consensus 244 l~~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el 293 (329)
T PRK06835 244 LINCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEEL 293 (329)
T ss_pred hccCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHH
Confidence 44678999999985543333 344555555432 2345666555545454
No 231
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.91 E-value=0.01 Score=67.68 Aligned_cols=65 Identities=23% Similarity=0.230 Sum_probs=45.1
Q ss_pred CCCcHHHHHHHHHHhcC--CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHH
Q 013858 142 TRPTSIQAQAMPVALSG--RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQI 210 (435)
Q Consensus 142 ~~p~~~Q~~~i~~~~~~--~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~ 210 (435)
..+++.|++++..++.+ +-++|.|..|+|||+.. -.++..+... ....+..++.++||--.|..+
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l-~~v~~~~~~l---~~~~~~~V~glAPTgrAAk~L 1032 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQF-RAVMSAVNTL---PESERPRVVGLGPTHRAVGEM 1032 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHH-HHHHHHHHHh---hcccCceEEEECCcHHHHHHH
Confidence 35799999999999975 45999999999999853 2333322211 011246788899998766544
No 232
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=96.90 E-value=7.2e-05 Score=76.51 Aligned_cols=74 Identities=19% Similarity=0.231 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHc---CCCcE
Q 013858 351 EKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRN---GSTNI 427 (435)
Q Consensus 351 ~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~---g~~~V 427 (435)
.|+..|..++++.. ..+++++||..-....+.+-.++...+ ....+.|..+..+|+..+.+|.. .....
T Consensus 615 ~k~~~l~~~~~~l~-------~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cf 686 (696)
T KOG0383|consen 615 GKLTLLLKMLKKLK-------SSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCF 686 (696)
T ss_pred HHHHHHHHHHHHHH-------hcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEE
Confidence 45555555555544 345679999999999999999999888 88899999999999999999984 34556
Q ss_pred EEEcC
Q 013858 428 LVFSY 432 (435)
Q Consensus 428 LVaT~ 432 (435)
|.||-
T Consensus 687 llstr 691 (696)
T KOG0383|consen 687 LLSTR 691 (696)
T ss_pred Eeecc
Confidence 77764
No 233
>PRK06921 hypothetical protein; Provisional
Probab=96.89 E-value=0.016 Score=53.75 Aligned_cols=27 Identities=19% Similarity=0.224 Sum_probs=18.9
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHH
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQHCV 184 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~~~ 184 (435)
.+.++++.|++|+|||..+ ..+...+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa-~aia~~l~ 142 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLL-TAAANELM 142 (266)
T ss_pred CCCeEEEECCCCCcHHHHH-HHHHHHHh
Confidence 3567999999999999743 33344443
No 234
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.89 E-value=0.02 Score=53.15 Aligned_cols=55 Identities=15% Similarity=0.290 Sum_probs=35.4
Q ss_pred CCceEEEEecCCcccC-CCCHHHHHHHHHhCC------CCCeEEEEcccccHHHHHHHHHHc
Q 013858 268 SRVSFVILDEADRMLD-MGFEPQIREVMQNLP------DKHQTLLFSATMPVEIEALAQEYL 322 (435)
Q Consensus 268 ~~~~~iIiDEah~~~~-~~~~~~i~~i~~~~~------~~~q~i~~SATl~~~~~~~~~~~~ 322 (435)
.++++||||=+-++.. ......+..+..... ++..++.++||...+.-..+..|.
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~ 214 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFN 214 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHH
Confidence 4689999999886643 223345555554444 555688999997665555556664
No 235
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.84 E-value=0.0077 Score=57.51 Aligned_cols=32 Identities=22% Similarity=0.070 Sum_probs=26.0
Q ss_pred CcHHHHHHHHHHhcC-C---CEEEEccCCCchhHHh
Q 013858 144 PTSIQAQAMPVALSG-R---DLLGCAETGSGKTAAF 175 (435)
Q Consensus 144 p~~~Q~~~i~~~~~~-~---~vii~~~TGsGKT~~~ 175 (435)
.+|||...|..+... + -.+++||.|.|||+.+
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A 39 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALA 39 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHH
Confidence 478999999888743 2 3889999999999754
No 236
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=96.82 E-value=0.0069 Score=61.26 Aligned_cols=153 Identities=16% Similarity=0.124 Sum_probs=83.7
Q ss_pred HHHHHHHHHHh-----cC----CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHH
Q 013858 146 SIQAQAMPVAL-----SG----RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 216 (435)
Q Consensus 146 ~~Q~~~i~~~~-----~~----~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~ 216 (435)
|+|+..+-.++ .| +.+++.-+=|-|||+.....++..+... ...++.++++++++.-|..+++.++.
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~----g~~~~~i~~~A~~~~QA~~~f~~~~~ 76 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLD----GEPGAEIYCAANTRDQAKIVFDEAKK 76 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcC----CccCceEEEEeCCHHHHHHHHHHHHH
Confidence 57887777666 22 2488888999999985433333333221 23367899999999999999999999
Q ss_pred HhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcC--CCCCCCceEEEEecCCcccCCCCHHHHHHHH
Q 013858 217 LSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQG--NTSLSRVSFVILDEADRMLDMGFEPQIREVM 294 (435)
Q Consensus 217 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~--~~~l~~~~~iIiDEah~~~~~~~~~~i~~i~ 294 (435)
+....+.+.... +... ... ..-.|.....+.+.+.+... ...=.+.+++|+||+|...+......+..-.
T Consensus 77 ~i~~~~~l~~~~--~~~~-----~~~-~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~~~~~~l~~g~ 148 (477)
T PF03354_consen 77 MIEASPELRKRK--KPKI-----IKS-NKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDDELYDALESGM 148 (477)
T ss_pred HHHhChhhccch--hhhh-----hhh-hceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCHHHHHHHHhhh
Confidence 887654333111 0000 000 01123222222222221111 1222357899999999775543334444444
Q ss_pred HhCCCCCeEEEEcccc
Q 013858 295 QNLPDKHQTLLFSATM 310 (435)
Q Consensus 295 ~~~~~~~q~i~~SATl 310 (435)
...+...-+++.||..
T Consensus 149 ~~r~~pl~~~ISTag~ 164 (477)
T PF03354_consen 149 GARPNPLIIIISTAGD 164 (477)
T ss_pred ccCCCceEEEEeCCCC
Confidence 4433343344445543
No 237
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=96.81 E-value=0.012 Score=61.05 Aligned_cols=157 Identities=21% Similarity=0.271 Sum_probs=93.0
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCC--CEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccCh
Q 013858 127 CLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGR--DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTR 204 (435)
Q Consensus 127 ~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~--~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r 204 (435)
+.++..-..+.......+..-|.+.+..++..+ -+++.|.-|=|||.+.-+.+ ..+.... ....++|++|+.
T Consensus 198 ~~~~~~~~~l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~-~~~~~~~-----~~~~iiVTAP~~ 271 (758)
T COG1444 198 PLDPVFPRELYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIAL-AAAARLA-----GSVRIIVTAPTP 271 (758)
T ss_pred CCCCCCCHHHhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHH-HHHHHhc-----CCceEEEeCCCH
Confidence 334433455666666666666666777777543 59999999999998776655 2222211 034799999999
Q ss_pred hhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCC
Q 013858 205 ELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDM 284 (435)
Q Consensus 205 ~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~ 284 (435)
+.+....+.+.+-.... +++......... ...........|-+-.|.... ..-+++|||||=.+
T Consensus 272 ~nv~~Lf~fa~~~l~~l-g~~~~v~~d~~g--~~~~~~~~~~~i~y~~P~~a~----------~~~DllvVDEAAaI--- 335 (758)
T COG1444 272 ANVQTLFEFAGKGLEFL-GYKRKVAPDALG--EIREVSGDGFRIEYVPPDDAQ----------EEADLLVVDEAAAI--- 335 (758)
T ss_pred HHHHHHHHHHHHhHHHh-CCcccccccccc--ceeeecCCceeEEeeCcchhc----------ccCCEEEEehhhcC---
Confidence 98887776665544333 222222111100 000001122345566664331 12679999999865
Q ss_pred CCHHHHHHHHHhCCCCCeEEEEcccc
Q 013858 285 GFEPQIREVMQNLPDKHQTLLFSATM 310 (435)
Q Consensus 285 ~~~~~i~~i~~~~~~~~q~i~~SATl 310 (435)
-.+.+.+++..++ .++||.|+
T Consensus 336 -plplL~~l~~~~~----rv~~sTTI 356 (758)
T COG1444 336 -PLPLLHKLLRRFP----RVLFSTTI 356 (758)
T ss_pred -ChHHHHHHHhhcC----ceEEEeee
Confidence 3567777776654 68999997
No 238
>PRK10867 signal recognition particle protein; Provisional
Probab=96.80 E-value=0.024 Score=56.08 Aligned_cols=16 Identities=25% Similarity=0.331 Sum_probs=14.0
Q ss_pred CEEEEccCCCchhHHh
Q 013858 160 DLLGCAETGSGKTAAF 175 (435)
Q Consensus 160 ~vii~~~TGsGKT~~~ 175 (435)
.++++|++|+|||++.
T Consensus 102 vI~~vG~~GsGKTTta 117 (433)
T PRK10867 102 VIMMVGLQGAGKTTTA 117 (433)
T ss_pred EEEEECCCCCcHHHHH
Confidence 4889999999999865
No 239
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.80 E-value=0.012 Score=61.18 Aligned_cols=39 Identities=13% Similarity=0.264 Sum_probs=26.6
Q ss_pred CCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEc
Q 013858 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (435)
Q Consensus 268 ~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~S 307 (435)
.+++++||||+|+|.... ...+++++..-++..++|+.|
T Consensus 118 gr~KVIIIDEah~LT~~A-~NALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHA-FNAMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred CCceEEEEeChhhCCHHH-HHHHHHHHHhcCCCeEEEEEE
Confidence 468999999999875432 345666666666666555544
No 240
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.77 E-value=0.0078 Score=62.23 Aligned_cols=38 Identities=16% Similarity=0.239 Sum_probs=26.7
Q ss_pred CCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEE
Q 013858 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLF 306 (435)
Q Consensus 268 ~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~ 306 (435)
.+++++||||||+|... -...+.+.+..-++...+|+.
T Consensus 118 g~~KV~IIDEah~Ls~~-a~NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRH-SFNALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred CCCEEEEEechHhCCHH-HHHHHHHHHHcCCCCeEEEEe
Confidence 47899999999987543 345666677766666665555
No 241
>PRK11054 helD DNA helicase IV; Provisional
Probab=96.76 E-value=0.012 Score=61.78 Aligned_cols=72 Identities=24% Similarity=0.266 Sum_probs=53.6
Q ss_pred CCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHh
Q 013858 141 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (435)
Q Consensus 141 ~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~ 218 (435)
-..+++-|+.++.. ...+++|.|..|||||.+. +.-+.+++.... ..+..+|+++.++.+|..+.+++....
T Consensus 194 ~~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl-~~r~ayLl~~~~---~~~~~IL~ltft~~AA~em~eRL~~~l 265 (684)
T PRK11054 194 SSPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVL-VARAGWLLARGQ---AQPEQILLLAFGRQAAEEMDERIRERL 265 (684)
T ss_pred CCCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHH-HHHHHHHHHhCC---CCHHHeEEEeccHHHHHHHHHHHHHhc
Confidence 35789999999864 3356889999999999874 455555554321 124589999999999999998887654
No 242
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=96.76 E-value=0.051 Score=55.83 Aligned_cols=70 Identities=11% Similarity=0.104 Sum_probs=50.2
Q ss_pred CCcHHHHHHHHHHh---cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhh
Q 013858 143 RPTSIQAQAMPVAL---SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSR 219 (435)
Q Consensus 143 ~p~~~Q~~~i~~~~---~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~ 219 (435)
.|.|.=.+-|..+. +.+-.++.+|=|.|||++..+.+. ++... .+.+++|++|...-+.++.+.++.+..
T Consensus 169 ~~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~-~La~f------~Gi~IlvTAH~~~ts~evF~rv~~~le 241 (752)
T PHA03333 169 APSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILA-AMISF------LEIDIVVQAQRKTMCLTLYNRVETVVH 241 (752)
T ss_pred CCChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHH-HHHHh------cCCeEEEECCChhhHHHHHHHHHHHHH
Confidence 45666566666555 445688999999999987543333 33332 157899999999999999988888776
No 243
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=96.75 E-value=0.001 Score=57.06 Aligned_cols=123 Identities=21% Similarity=0.284 Sum_probs=53.7
Q ss_pred EEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHH
Q 013858 162 LGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSE 241 (435)
Q Consensus 162 ii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 241 (435)
|+.|+-|-|||.+.-+.+- .+... ....++|.+|+.+.+..+++.+..-.+.. +++........ .....
T Consensus 1 VltA~RGRGKSa~lGl~~a-~l~~~------~~~~I~vtAP~~~~~~~lf~~~~~~l~~~-~~~~~~~~~~~---~~~~~ 69 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAA-ALIQK------GKIRILVTAPSPENVQTLFEFAEKGLKAL-GYKEEKKKRIG---QIIKL 69 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCC-CSSS-----------EEEE-SS--S-HHHHHCC---------------------------
T ss_pred CccCCCCCCHHHHHHHHHH-HHHHh------cCceEEEecCCHHHHHHHHHHHHhhcccc-ccccccccccc---ccccc
Confidence 5789999999985433221 11221 12469999999998887766654433322 12210000000 00001
Q ss_pred HhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEcccc
Q 013858 242 LRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATM 310 (435)
Q Consensus 242 ~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SATl 310 (435)
...+..|-|..|+.+... ....+++|||||=.+ -.+.+..++...+ .++||.|.
T Consensus 70 ~~~~~~i~f~~Pd~l~~~-------~~~~DlliVDEAAaI----p~p~L~~ll~~~~----~vv~stTi 123 (177)
T PF05127_consen 70 RFNKQRIEFVAPDELLAE-------KPQADLLIVDEAAAI----PLPLLKQLLRRFP----RVVFSTTI 123 (177)
T ss_dssp ---CCC--B--HHHHCCT-----------SCEEECTGGGS-----HHHHHHHHCCSS----EEEEEEEB
T ss_pred ccccceEEEECCHHHHhC-------cCCCCEEEEechhcC----CHHHHHHHHhhCC----EEEEEeec
Confidence 123467888888766322 224589999999865 3566666665443 67888886
No 244
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.75 E-value=0.0087 Score=55.48 Aligned_cols=116 Identities=17% Similarity=0.236 Sum_probs=58.3
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHHhcC-CCCCCCCCeEEEEccChhhHHHHHHHH-HHHhhcCCCceEEEEECCCCHH
Q 013858 159 RDLLGCAETGSGKTAAFTIPMIQHCVAQT-PVGRGDGPLALVLAPTRELAQQIEKEV-KALSRSLDSFKTAIVVGGTNIA 236 (435)
Q Consensus 159 ~~vii~~~TGsGKT~~~~~~~l~~~~~~~-~~~~~~~~~~lil~P~r~la~q~~~~~-~~~~~~~~~~~~~~~~g~~~~~ 236 (435)
.+++++|+||-|||++. --|....... ..+...-|.+++-+|...-....+..+ ..++-... . .....
T Consensus 62 p~lLivG~snnGKT~Ii--~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~---~-----~~~~~ 131 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMII--ERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYR---P-----RDRVA 131 (302)
T ss_pred CceEEecCCCCcHHHHH--HHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccC---C-----CCCHH
Confidence 47999999999999843 2222211110 011112355566667765544454444 44443221 0 00000
Q ss_pred HHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCCCH--HHHHHHHHhCCCCCeE
Q 013858 237 EQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFE--PQIREVMQNLPDKHQT 303 (435)
Q Consensus 237 ~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~~~--~~i~~i~~~~~~~~q~ 303 (435)
.. . ...++.+. --+++++||||+|.++..... ..+...++.+.+..++
T Consensus 132 ~~-------------~-~~~~~llr-----~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~i 181 (302)
T PF05621_consen 132 KL-------------E-QQVLRLLR-----RLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQI 181 (302)
T ss_pred HH-------------H-HHHHHHHH-----HcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCC
Confidence 00 0 01112222 235789999999987765432 3455566666665443
No 245
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.74 E-value=0.028 Score=59.27 Aligned_cols=22 Identities=36% Similarity=0.400 Sum_probs=16.0
Q ss_pred EEEEccCCCchhHHhHHHHHHHH
Q 013858 161 LLGCAETGSGKTAAFTIPMIQHC 183 (435)
Q Consensus 161 vii~~~TGsGKT~~~~~~~l~~~ 183 (435)
++|.|+||+|||++. ..++..+
T Consensus 784 LYIyG~PGTGKTATV-K~VLrEL 805 (1164)
T PTZ00112 784 LYISGMPGTGKTATV-YSVIQLL 805 (1164)
T ss_pred EEEECCCCCCHHHHH-HHHHHHH
Confidence 459999999999864 3444444
No 246
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.72 E-value=0.014 Score=50.79 Aligned_cols=49 Identities=20% Similarity=0.274 Sum_probs=31.7
Q ss_pred EEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHh
Q 013858 161 LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (435)
Q Consensus 161 vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~ 218 (435)
+++.|++|+|||+..+ -++...... |..++++... +...++.+.+..++
T Consensus 2 ~li~G~~G~GKT~l~~-~~~~~~~~~-------g~~v~~~s~e-~~~~~~~~~~~~~g 50 (187)
T cd01124 2 TLLSGGPGTGKTTFAL-QFLYAGLAR-------GEPGLYVTLE-ESPEELIENAESLG 50 (187)
T ss_pred EEEEcCCCCCHHHHHH-HHHHHHHHC-------CCcEEEEECC-CCHHHHHHHHHHcC
Confidence 6899999999997543 222222222 5668877643 55667777776664
No 247
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=96.71 E-value=0.023 Score=58.20 Aligned_cols=183 Identities=16% Similarity=0.207 Sum_probs=105.9
Q ss_pred cCCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHh--cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEE
Q 013858 125 DMCLHPSIMKDIEFH---EYTRPTSIQAQAMPVAL--SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALV 199 (435)
Q Consensus 125 ~~~l~~~l~~~l~~~---~~~~p~~~Q~~~i~~~~--~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~li 199 (435)
++-|-+++.+.++-. |+.-++.-=.+.+...- .|-.+|+.-.+|.|||+.. +.....++.. -....+|+
T Consensus 244 ~iflapqla~v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQV-isF~diflRh-----T~AKtVL~ 317 (1387)
T KOG1016|consen 244 DIFLAPQLAHVLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQV-ISFSDIFLRH-----TKAKTVLV 317 (1387)
T ss_pred ceeehhhhHhhcCccccCcEEEehhhHHHHHhhccccCCcceeeeeccccCceeEE-eehhHHHhhc-----CccceEEE
Confidence 344666777666432 22222322223333322 3456899999999999843 3333333321 12467999
Q ss_pred EccChhhHHHHHHHHHHHhhcC--------CCceEEEEECCCCHHHHHHHH----hCCCcEEEECcHHHHHHHHcC----
Q 013858 200 LAPTRELAQQIEKEVKALSRSL--------DSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQG---- 263 (435)
Q Consensus 200 l~P~r~la~q~~~~~~~~~~~~--------~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~T~~~l~~~l~~~---- 263 (435)
|+|-..| +.|..+|..+.... ..+.+.++.++.....++.++ -....|+.+-++++.-++...
T Consensus 318 ivPiNTl-QNWlsEfnmWiP~y~sD~~vrpR~F~vf~LnD~~KT~~~Rakvi~~Wv~~GGVlLvGYemfRLL~lk~~~~~ 396 (1387)
T KOG1016|consen 318 IVPINTL-QNWLSEFNMWIPKYFSDTGVRPRSFEVFLLNDGVKTFDQRAKVIEQWVQTGGVLLVGYEMFRLLILKTLPKK 396 (1387)
T ss_pred EEehHHH-HHHHHHhhhhcCCCcccCCCccceeEEEEecCchhhHHHHHHHHHHHhccCCEEEehHHHHHHHHHhccccc
Confidence 9998776 55888887776432 134555666666555544333 344578888888773332220
Q ss_pred -C--CC-----------------------------CCCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEccccc
Q 013858 264 -N--TS-----------------------------LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMP 311 (435)
Q Consensus 264 -~--~~-----------------------------l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SATl~ 311 (435)
. .. -..-++||.||-||+.+.. ..+..-+..++..+++|+....+.
T Consensus 397 grpkkt~kr~~~~~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~~--A~iS~aLk~IrtrRRiVLTGYPLQ 474 (1387)
T KOG1016|consen 397 GRPKKTLKRISSGFIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNIT--AEISMALKAIRTRRRIVLTGYPLQ 474 (1387)
T ss_pred CCccccccccCCcccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccch--HHHHHHHHHhhhceeEEEeccccc
Confidence 0 00 1124789999999998753 344444555566677888777775
Q ss_pred HHHHH
Q 013858 312 VEIEA 316 (435)
Q Consensus 312 ~~~~~ 316 (435)
..+.+
T Consensus 475 NNLlE 479 (1387)
T KOG1016|consen 475 NNLLE 479 (1387)
T ss_pred cchHH
Confidence 55433
No 248
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.71 E-value=0.023 Score=53.90 Aligned_cols=141 Identities=18% Similarity=0.219 Sum_probs=74.2
Q ss_pred CCCcHHHHHHHHHHh----cCC---CEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHH
Q 013858 142 TRPTSIQAQAMPVAL----SGR---DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEV 214 (435)
Q Consensus 142 ~~p~~~Q~~~i~~~~----~~~---~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~ 214 (435)
..++|||...+..+. .|+ -.++.||.|.||+..+ ..+...+...... + .+ -|+ .+
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA-~~lA~~LlC~~~~--~-~~----~c~----------~c 64 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVA-LALAEHVLASGPD--P-AA----AQR----------TR 64 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHH-HHHHHHHhCCCCC--C-CC----cch----------HH
Confidence 457899999998766 344 3899999999999754 3344444443211 0 00 011 11
Q ss_pred HHHh-hcCCCceEEEEEC-CCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCCCHHHHHH
Q 013858 215 KALS-RSLDSFKTAIVVG-GTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIRE 292 (435)
Q Consensus 215 ~~~~-~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~~~~~i~~ 292 (435)
+.+. ..++++.+....- +... .....|.|-..-.+.+.+.... ....++++|||+||+|.. .-...+.+
T Consensus 65 ~~~~~g~HPD~~~i~~~p~~~~~-------k~~~~I~idqIR~l~~~~~~~p-~~g~~kV~iI~~ae~m~~-~AaNaLLK 135 (319)
T PRK08769 65 QLIAAGTHPDLQLVSFIPNRTGD-------KLRTEIVIEQVREISQKLALTP-QYGIAQVVIVDPADAINR-AACNALLK 135 (319)
T ss_pred HHHhcCCCCCEEEEecCCCcccc-------cccccccHHHHHHHHHHHhhCc-ccCCcEEEEeccHhhhCH-HHHHHHHH
Confidence 2221 2335555442111 1000 0001222222222333332222 235689999999998732 24566777
Q ss_pred HHHhCCCCCeEEEEccc
Q 013858 293 VMQNLPDKHQTLLFSAT 309 (435)
Q Consensus 293 i~~~~~~~~q~i~~SAT 309 (435)
++..-++...+|+.|..
T Consensus 136 tLEEPp~~~~fiL~~~~ 152 (319)
T PRK08769 136 TLEEPSPGRYLWLISAQ 152 (319)
T ss_pred HhhCCCCCCeEEEEECC
Confidence 77776777767766654
No 249
>PRK12377 putative replication protein; Provisional
Probab=96.71 E-value=0.019 Score=52.37 Aligned_cols=27 Identities=15% Similarity=0.201 Sum_probs=19.1
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHh
Q 013858 158 GRDLLGCAETGSGKTAAFTIPMIQHCVA 185 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~~~~~l~~~~~ 185 (435)
..++++.|++|+|||..+ ..+...+..
T Consensus 101 ~~~l~l~G~~GtGKThLa-~AIa~~l~~ 127 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLA-AAIGNRLLA 127 (248)
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHHHH
Confidence 357999999999999753 344444443
No 250
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.69 E-value=0.019 Score=61.43 Aligned_cols=40 Identities=18% Similarity=0.234 Sum_probs=28.4
Q ss_pred CCCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEc
Q 013858 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (435)
Q Consensus 267 l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~S 307 (435)
..+++++||||+|+|... -...+++++...+..+.+|+.+
T Consensus 118 ~~~~KV~IIDEad~lt~~-a~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 118 ESRYKIFIIDEAHMVTPQ-GFNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred cCCceEEEEechhhcCHH-HHHHHHHHHhCCCCCeEEEEEe
Confidence 357899999999988543 3456677777777777666554
No 251
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.68 E-value=0.01 Score=53.51 Aligned_cols=19 Identities=37% Similarity=0.440 Sum_probs=16.0
Q ss_pred cCCCEEEEccCCCchhHHh
Q 013858 157 SGRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~ 175 (435)
.+..+++.|++|+|||..+
T Consensus 37 ~~~~lll~G~~G~GKT~la 55 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLL 55 (226)
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4567999999999999854
No 252
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.68 E-value=0.034 Score=54.91 Aligned_cols=16 Identities=38% Similarity=0.409 Sum_probs=14.2
Q ss_pred CEEEEccCCCchhHHh
Q 013858 160 DLLGCAETGSGKTAAF 175 (435)
Q Consensus 160 ~vii~~~TGsGKT~~~ 175 (435)
.++++|++|+|||++.
T Consensus 101 vi~~vG~~GsGKTTta 116 (428)
T TIGR00959 101 VILMVGLQGSGKTTTC 116 (428)
T ss_pred EEEEECCCCCcHHHHH
Confidence 4889999999999864
No 253
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.67 E-value=0.0086 Score=54.15 Aligned_cols=43 Identities=14% Similarity=0.261 Sum_probs=25.5
Q ss_pred CceEEEEecCCcccCCCCHHHHHHHHHhCCCCCe-EEEEcccccH
Q 013858 269 RVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQ-TLLFSATMPV 312 (435)
Q Consensus 269 ~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q-~i~~SATl~~ 312 (435)
..++|||||+|.+-. .....+..++.......+ +++++++.++
T Consensus 90 ~~~~liiDdi~~l~~-~~~~~L~~~~~~~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 90 EAELYAVDDVERLDD-AQQIALFNLFNRVRAHGQGALLVAGPAAP 133 (227)
T ss_pred cCCEEEEeChhhcCc-hHHHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 467899999997633 233445555544333333 4677777544
No 254
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.66 E-value=0.013 Score=68.40 Aligned_cols=63 Identities=24% Similarity=0.241 Sum_probs=44.8
Q ss_pred CCCcHHHHHHHHHHhcCC--CEEEEccCCCchhHHhH--HHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHH
Q 013858 142 TRPTSIQAQAMPVALSGR--DLLGCAETGSGKTAAFT--IPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQI 210 (435)
Q Consensus 142 ~~p~~~Q~~~i~~~~~~~--~vii~~~TGsGKT~~~~--~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~ 210 (435)
..+++.|++++..++.+. -++|.|..|+|||+... +-.+...+.. .+..++.++||-..|..+
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~------~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFES------EQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHh------cCCeEEEEeChHHHHHHH
Confidence 468999999999998764 48889999999998531 1222222221 256799999997766554
No 255
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.65 E-value=0.015 Score=49.17 Aligned_cols=35 Identities=23% Similarity=0.250 Sum_probs=21.7
Q ss_pred EEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccC
Q 013858 161 LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPT 203 (435)
Q Consensus 161 vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~ 203 (435)
+++.|++|+|||+... .+...... .+..++++..-
T Consensus 2 ~~i~G~~G~GKT~l~~-~i~~~~~~-------~~~~v~~~~~e 36 (165)
T cd01120 2 ILVFGPTGSGKTTLAL-QLALNIAT-------KGGKVVYVDIE 36 (165)
T ss_pred eeEeCCCCCCHHHHHH-HHHHHHHh-------cCCEEEEEECC
Confidence 6899999999998542 22222222 14567776654
No 256
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.65 E-value=0.016 Score=55.30 Aligned_cols=40 Identities=18% Similarity=0.258 Sum_probs=26.9
Q ss_pred CceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEcc
Q 013858 269 RVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSA 308 (435)
Q Consensus 269 ~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SA 308 (435)
..++|||||+|++........+..++...+..+++|+.+.
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n 139 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITAN 139 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcC
Confidence 4679999999987333344556666777677776665443
No 257
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.64 E-value=0.054 Score=51.50 Aligned_cols=55 Identities=15% Similarity=0.283 Sum_probs=33.5
Q ss_pred CCceEEEEecCCcccCCC-CHHHHHHHHHhC------CCCCeEEEEcccccHHHHHHHHHHc
Q 013858 268 SRVSFVILDEADRMLDMG-FEPQIREVMQNL------PDKHQTLLFSATMPVEIEALAQEYL 322 (435)
Q Consensus 268 ~~~~~iIiDEah~~~~~~-~~~~i~~i~~~~------~~~~q~i~~SATl~~~~~~~~~~~~ 322 (435)
.++++||||=+-++.... ....+.++...+ .+.-.++.++||.....-..++.|.
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f~ 256 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAFH 256 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHHH
Confidence 568999999998764332 234444444322 2334578889997655444556664
No 258
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=96.60 E-value=0.015 Score=61.84 Aligned_cols=87 Identities=15% Similarity=0.113 Sum_probs=65.5
Q ss_pred HhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEcccccH------HHH
Q 013858 242 LRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPV------EIE 315 (435)
Q Consensus 242 ~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SATl~~------~~~ 315 (435)
+.....|+++||..|...+..+.+.+..+..|||||||++....-..-+.+++....+..-+.+|||.+.. .++
T Consensus 4 ly~~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~~~~~g~~~l~ 83 (814)
T TIGR00596 4 VYLEGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPEAFTMGFSPLE 83 (814)
T ss_pred HhhcCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCcccccchHHHH
Confidence 33446899999999988888889999999999999999988776566666776665555568999999853 345
Q ss_pred HHHHHHcCCCeEE
Q 013858 316 ALAQEYLTDPVQV 328 (435)
Q Consensus 316 ~~~~~~~~~~~~i 328 (435)
...+.+.-..+.+
T Consensus 84 ~vmk~L~i~~v~l 96 (814)
T TIGR00596 84 TKMRNLFLRHVYL 96 (814)
T ss_pred HHHHHhCcCeEEE
Confidence 5555554444443
No 259
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.59 E-value=0.0074 Score=59.29 Aligned_cols=33 Identities=15% Similarity=0.157 Sum_probs=26.3
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEccCCCchhHHh
Q 013858 143 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 143 ~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~ 175 (435)
-+.......+..+..++++++.|++|+|||+.+
T Consensus 179 i~e~~le~l~~~L~~~~~iil~GppGtGKT~lA 211 (459)
T PRK11331 179 IPETTIETILKRLTIKKNIILQGPPGVGKTFVA 211 (459)
T ss_pred CCHHHHHHHHHHHhcCCCEEEECCCCCCHHHHH
Confidence 345556666777778999999999999999865
No 260
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.55 E-value=0.057 Score=48.77 Aligned_cols=21 Identities=33% Similarity=0.487 Sum_probs=16.0
Q ss_pred EEEEccCCCchhHHhHHHHHHH
Q 013858 161 LLGCAETGSGKTAAFTIPMIQH 182 (435)
Q Consensus 161 vii~~~TGsGKT~~~~~~~l~~ 182 (435)
+|++|+|||||++.. ..++.+
T Consensus 130 viiVGaTGSGKSTtm-AaMi~y 150 (375)
T COG5008 130 VIIVGATGSGKSTTM-AAMIGY 150 (375)
T ss_pred EEEECCCCCCchhhH-HHHhcc
Confidence 899999999999863 444443
No 261
>PF13173 AAA_14: AAA domain
Probab=96.55 E-value=0.031 Score=45.49 Aligned_cols=38 Identities=16% Similarity=0.345 Sum_probs=25.1
Q ss_pred CceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEccc
Q 013858 269 RVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSAT 309 (435)
Q Consensus 269 ~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT 309 (435)
.-.+|+|||+|++-+ +...+..+.... ++.++++.+-.
T Consensus 61 ~~~~i~iDEiq~~~~--~~~~lk~l~d~~-~~~~ii~tgS~ 98 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPD--WEDALKFLVDNG-PNIKIILTGSS 98 (128)
T ss_pred CCcEEEEehhhhhcc--HHHHHHHHHHhc-cCceEEEEccc
Confidence 557899999998743 455666666544 45666655443
No 262
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=96.55 E-value=0.011 Score=55.45 Aligned_cols=62 Identities=21% Similarity=0.260 Sum_probs=45.1
Q ss_pred HHCCCCCCcHHHHHHHHHHhcCC-CEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhH
Q 013858 137 EFHEYTRPTSIQAQAMPVALSGR-DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELA 207 (435)
Q Consensus 137 ~~~~~~~p~~~Q~~~i~~~~~~~-~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la 207 (435)
....+...++-|...+-.+...+ +++++|.||||||+ ++-++...... ..++|++-.|.+|-
T Consensus 151 dli~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTT--lLNal~~~i~~-------~eRvItiEDtaELq 213 (355)
T COG4962 151 DLIIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTT--LLNALSGFIDS-------DERVITIEDTAELQ 213 (355)
T ss_pred HHHHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHH--HHHHHHhcCCC-------cccEEEEeehhhhc
Confidence 33445667888999888888776 89999999999998 44444332221 34788888888773
No 263
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.52 E-value=0.019 Score=59.11 Aligned_cols=39 Identities=13% Similarity=0.232 Sum_probs=26.4
Q ss_pred CCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEc
Q 013858 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (435)
Q Consensus 268 ~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~S 307 (435)
.+++++||||+|++... -...+.+++...++...+|+.+
T Consensus 117 gk~KV~IIDEVh~LS~~-A~NALLKtLEEPP~~v~FILaT 155 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTH-SFNALLKTLEEPPEHVKFLFAT 155 (702)
T ss_pred CCcEEEEEechHhcCHH-HHHHHHHHHhcCCCCcEEEEEE
Confidence 46899999999977443 3345666666666666555544
No 264
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=96.49 E-value=0.013 Score=62.35 Aligned_cols=72 Identities=21% Similarity=0.200 Sum_probs=54.1
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhh
Q 013858 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSR 219 (435)
Q Consensus 142 ~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~ 219 (435)
..+++-|++++.. ...+++|.|..|||||.+. ..=+.++...... ...++|+++.|+.+|..+.+++.++..
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L-~~Ria~Li~~~~v---~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVL-THRIAWLLSVENA---SPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHH-HHHHHHHHHcCCC---CHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 3578899998865 3457999999999999874 4444555543211 245799999999999999999988764
No 265
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.49 E-value=0.028 Score=59.72 Aligned_cols=41 Identities=17% Similarity=0.225 Sum_probs=28.0
Q ss_pred CCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEcccc
Q 013858 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATM 310 (435)
Q Consensus 268 ~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SATl 310 (435)
.+++++||||||+|. .+-...+++++..-+..+.+|+. .|-
T Consensus 118 gk~KViIIDEAh~LT-~eAqNALLKtLEEPP~~vrFILa-TTe 158 (944)
T PRK14949 118 GRFKVYLIDEVHMLS-RSSFNALLKTLEEPPEHVKFLLA-TTD 158 (944)
T ss_pred CCcEEEEEechHhcC-HHHHHHHHHHHhccCCCeEEEEE-CCC
Confidence 468999999999874 22345666677666667766665 443
No 266
>PTZ00293 thymidine kinase; Provisional
Probab=96.49 E-value=0.017 Score=51.00 Aligned_cols=40 Identities=15% Similarity=0.074 Sum_probs=26.1
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccCh
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTR 204 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r 204 (435)
.|+=.++.||+++|||+-.+-.+..+... +..++++-|..
T Consensus 3 ~G~i~vi~GpMfSGKTteLLr~i~~y~~a--------g~kv~~~kp~~ 42 (211)
T PTZ00293 3 RGTISVIIGPMFSGKTTELMRLVKRFTYS--------EKKCVVIKYSK 42 (211)
T ss_pred ceEEEEEECCCCChHHHHHHHHHHHHHHc--------CCceEEEEecc
Confidence 35557899999999997543333333222 56688888863
No 267
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.48 E-value=0.0027 Score=57.02 Aligned_cols=49 Identities=18% Similarity=0.297 Sum_probs=29.9
Q ss_pred CCCceEEEEecCCcccCCC-CHHHHHHHHHhCC-CCCeEEEEcccccHHHH
Q 013858 267 LSRVSFVILDEADRMLDMG-FEPQIREVMQNLP-DKHQTLLFSATMPVEIE 315 (435)
Q Consensus 267 l~~~~~iIiDEah~~~~~~-~~~~i~~i~~~~~-~~~q~i~~SATl~~~~~ 315 (435)
+..+++++||++|.+.+.. ....+..++..+. .+.++|+.|...|..+.
T Consensus 95 ~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~ 145 (219)
T PF00308_consen 95 LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELS 145 (219)
T ss_dssp HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTT
T ss_pred hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCcccc
Confidence 3468899999999875431 2344445555442 35577777767666543
No 268
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.47 E-value=0.036 Score=55.37 Aligned_cols=18 Identities=33% Similarity=0.327 Sum_probs=15.3
Q ss_pred CCCEEEEccCCCchhHHh
Q 013858 158 GRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~ 175 (435)
|+.+.++||||+|||++.
T Consensus 256 g~Vi~LvGpnGvGKTTTi 273 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTT 273 (484)
T ss_pred CcEEEEECCCCccHHHHH
Confidence 456889999999999964
No 269
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.44 E-value=0.03 Score=56.03 Aligned_cols=48 Identities=13% Similarity=0.191 Sum_probs=27.4
Q ss_pred CCCceEEEEecCCcccCC-CCHHHHHHHHHhCCC-CCeEEEEcccccHHH
Q 013858 267 LSRVSFVILDEADRMLDM-GFEPQIREVMQNLPD-KHQTLLFSATMPVEI 314 (435)
Q Consensus 267 l~~~~~iIiDEah~~~~~-~~~~~i~~i~~~~~~-~~q~i~~SATl~~~~ 314 (435)
+.+++++||||+|.+... .....+..++..+.. ..|+|+.|-..|..+
T Consensus 204 ~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l 253 (450)
T PRK14087 204 ICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELL 253 (450)
T ss_pred hccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHH
Confidence 346789999999976432 233444455544432 345555555555444
No 270
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.43 E-value=0.0086 Score=59.48 Aligned_cols=40 Identities=15% Similarity=0.238 Sum_probs=23.6
Q ss_pred CCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEccc
Q 013858 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSAT 309 (435)
Q Consensus 268 ~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT 309 (435)
.++.++||||||++... ....+.+.+..-+..+.+ ++.+|
T Consensus 120 g~~KV~IIDEah~Ls~~-A~NALLKtLEEPp~~viF-ILaTt 159 (484)
T PRK14956 120 GKYKVYIIDEVHMLTDQ-SFNALLKTLEEPPAHIVF-ILATT 159 (484)
T ss_pred CCCEEEEEechhhcCHH-HHHHHHHHhhcCCCceEE-EeecC
Confidence 46889999999987432 334455555554444433 33444
No 271
>PLN03025 replication factor C subunit; Provisional
Probab=96.43 E-value=0.052 Score=51.87 Aligned_cols=39 Identities=31% Similarity=0.370 Sum_probs=25.4
Q ss_pred CCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEc
Q 013858 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (435)
Q Consensus 268 ~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~S 307 (435)
.++++|||||+|++... ....+.+.+...++...+++.+
T Consensus 98 ~~~kviiiDE~d~lt~~-aq~aL~~~lE~~~~~t~~il~~ 136 (319)
T PLN03025 98 GRHKIVILDEADSMTSG-AQQALRRTMEIYSNTTRFALAC 136 (319)
T ss_pred CCeEEEEEechhhcCHH-HHHHHHHHHhcccCCceEEEEe
Confidence 35789999999987433 3455666666655556555443
No 272
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.43 E-value=0.022 Score=56.78 Aligned_cols=51 Identities=12% Similarity=0.288 Sum_probs=29.0
Q ss_pred CCceEEEEecCCcccCCC-CHHHHHHHHHhCC-CCCeEEEEcccccHHHHHHH
Q 013858 268 SRVSFVILDEADRMLDMG-FEPQIREVMQNLP-DKHQTLLFSATMPVEIEALA 318 (435)
Q Consensus 268 ~~~~~iIiDEah~~~~~~-~~~~i~~i~~~~~-~~~q~i~~SATl~~~~~~~~ 318 (435)
.++++++|||+|.+.... ....+..++..+. ...++|+.|-+.|..+..+.
T Consensus 201 ~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~ 253 (445)
T PRK12422 201 RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAME 253 (445)
T ss_pred ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhH
Confidence 467899999999775432 2334444444332 34555555555566554433
No 273
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.42 E-value=0.022 Score=56.26 Aligned_cols=40 Identities=23% Similarity=0.256 Sum_probs=31.1
Q ss_pred cHHHHHHHHHHhcCCC--EEEEccCCCchhHHhHHHHHHHHHh
Q 013858 145 TSIQAQAMPVALSGRD--LLGCAETGSGKTAAFTIPMIQHCVA 185 (435)
Q Consensus 145 ~~~Q~~~i~~~~~~~~--vii~~~TGsGKT~~~~~~~l~~~~~ 185 (435)
.+.|...+..+++... +++.||||||||+. +..++..+..
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~ 284 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNT 284 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcC
Confidence 6788888888887654 89999999999986 4666666544
No 274
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.42 E-value=0.058 Score=45.92 Aligned_cols=42 Identities=17% Similarity=0.404 Sum_probs=30.8
Q ss_pred CCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEcccc
Q 013858 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATM 310 (435)
Q Consensus 268 ~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SATl 310 (435)
..++++||||||+|.. .....+++.+..-+....+|++|..+
T Consensus 101 ~~~KviiI~~ad~l~~-~a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTE-EAQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp SSSEEEEEETGGGS-H-HHHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred CCceEEEeehHhhhhH-HHHHHHHHHhcCCCCCEEEEEEECCh
Confidence 5789999999998743 24567788888878788777766654
No 275
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=96.42 E-value=0.018 Score=57.59 Aligned_cols=89 Identities=18% Similarity=0.172 Sum_probs=55.4
Q ss_pred HHHHHHHHHCCCCCCc----HHHHHHHHHHh--cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccC
Q 013858 130 PSIMKDIEFHEYTRPT----SIQAQAMPVAL--SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPT 203 (435)
Q Consensus 130 ~~l~~~l~~~~~~~p~----~~Q~~~i~~~~--~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~ 203 (435)
+-+...|.+..-..++ -+|++-=..+. .++-+|++|..|||||++++- =+.+++......- .+..|||+.|+
T Consensus 192 EvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALH-RvAyLlY~~R~~l-~~k~vlvl~PN 269 (747)
T COG3973 192 EVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALH-RVAYLLYGYRGPL-QAKPVLVLGPN 269 (747)
T ss_pred HHHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHH-HHHHHHhcccccc-ccCceEEEcCc
Confidence 3444556665444333 24444444444 445699999999999988743 3333333211111 23449999999
Q ss_pred hhhHHHHHHHHHHHhhc
Q 013858 204 RELAQQIEKEVKALSRS 220 (435)
Q Consensus 204 r~la~q~~~~~~~~~~~ 220 (435)
+....-+.+++-.++..
T Consensus 270 ~vFleYis~VLPeLGe~ 286 (747)
T COG3973 270 RVFLEYISRVLPELGEE 286 (747)
T ss_pred HHHHHHHHHhchhhccC
Confidence 99998888888888754
No 276
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.40 E-value=0.02 Score=58.83 Aligned_cols=42 Identities=12% Similarity=0.240 Sum_probs=28.5
Q ss_pred CCCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEccc
Q 013858 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSAT 309 (435)
Q Consensus 267 l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT 309 (435)
..+++++||||+|+|... -.+.+.+.+..-++.+++|+.|--
T Consensus 122 ~gr~KViIIDEah~Ls~~-AaNALLKTLEEPP~~v~FILaTte 163 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNH-AFNAMLKTLEEPPEHVKFILATTD 163 (700)
T ss_pred cCCceEEEEEChHhcCHH-HHHHHHHhhccCCCCceEEEEeCC
Confidence 357899999999987543 234555666665667776666543
No 277
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.38 E-value=0.02 Score=57.82 Aligned_cols=17 Identities=29% Similarity=0.274 Sum_probs=14.9
Q ss_pred CEEEEccCCCchhHHhH
Q 013858 160 DLLGCAETGSGKTAAFT 176 (435)
Q Consensus 160 ~vii~~~TGsGKT~~~~ 176 (435)
.++++||.|+|||+++.
T Consensus 45 a~Lf~Gp~G~GKTT~Ar 61 (507)
T PRK06645 45 GYLLTGIRGVGKTTSAR 61 (507)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 59999999999998653
No 278
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.37 E-value=0.036 Score=50.17 Aligned_cols=54 Identities=13% Similarity=0.122 Sum_probs=33.7
Q ss_pred hcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHh
Q 013858 156 LSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (435)
Q Consensus 156 ~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~ 218 (435)
..|..+++.|++|+|||+.. +-++...... +.++++++. .+-..+..+.+..++
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~-~~~~~~~~~~-------g~~~~yi~~-e~~~~~~~~~~~~~g 75 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILS-QRLAYGFLQN-------GYSVSYVST-QLTTTEFIKQMMSLG 75 (230)
T ss_pred CCCcEEEEECCCCCCHHHHH-HHHHHHHHhC-------CCcEEEEeC-CCCHHHHHHHHHHhC
Confidence 35778999999999999753 2333333332 456788873 344455555555554
No 279
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.36 E-value=0.025 Score=52.01 Aligned_cols=47 Identities=19% Similarity=0.329 Sum_probs=30.1
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHH
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEK 212 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~ 212 (435)
.+.++++.|++|+|||..+ .++-..+... |. -++.+++.+++.++..
T Consensus 104 ~~~nl~l~G~~G~GKThLa-~Ai~~~l~~~-------g~-sv~f~~~~el~~~Lk~ 150 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLA-IAIGNELLKA-------GI-SVLFITAPDLLSKLKA 150 (254)
T ss_pred cCCcEEEECCCCCcHHHHH-HHHHHHHHHc-------CC-eEEEEEHHHHHHHHHH
Confidence 6779999999999999864 3444444432 33 4444555566655533
No 280
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=96.36 E-value=0.02 Score=61.11 Aligned_cols=71 Identities=18% Similarity=0.187 Sum_probs=53.3
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhh
Q 013858 143 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSR 219 (435)
Q Consensus 143 ~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~ 219 (435)
.+++-|++++.. ...+++|.|..|||||.+. +.=+.++...... ....+|+++-|+.+|..+.+++.++..
T Consensus 9 ~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~vl-~~Ria~Li~~~~v---~p~~IL~lTFT~kAA~Em~~Rl~~~~~ 79 (721)
T PRK11773 9 SLNDKQREAVAA--PLGNMLVLAGAGSGKTRVL-VHRIAWLMQVENA---SPYSIMAVTFTNKAAAEMRHRIEQLLG 79 (721)
T ss_pred hcCHHHHHHHhC--CCCCEEEEecCCCCHHHHH-HHHHHHHHHcCCC---ChhHeEeeeccHHHHHHHHHHHHHHhc
Confidence 478999999875 3457889999999999875 4444455543211 235799999999999999999988754
No 281
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=96.34 E-value=0.0076 Score=51.87 Aligned_cols=91 Identities=21% Similarity=0.191 Sum_probs=52.2
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHH
Q 013858 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAE 237 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 237 (435)
|+=.+++||+.||||...+.-+-.+... |.++++..|...- ++. .-.+....| .
T Consensus 4 g~l~~i~gpM~SGKT~eLl~r~~~~~~~--------g~~v~vfkp~iD~---------R~~----~~~V~Sr~G-~---- 57 (201)
T COG1435 4 GWLEFIYGPMFSGKTEELLRRARRYKEA--------GMKVLVFKPAIDT---------RYG----VGKVSSRIG-L---- 57 (201)
T ss_pred EEEEEEEccCcCcchHHHHHHHHHHHHc--------CCeEEEEeccccc---------ccc----cceeeeccC-C----
Confidence 3446899999999998543322222222 5678888886321 010 011111111 1
Q ss_pred HHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcc
Q 013858 238 QRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRM 281 (435)
Q Consensus 238 ~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~ 281 (435)
....++|-.+..+...+....... .+++|.||||+-+
T Consensus 58 ------~~~A~~i~~~~~i~~~i~~~~~~~-~~~~v~IDEaQF~ 94 (201)
T COG1435 58 ------SSEAVVIPSDTDIFDEIAALHEKP-PVDCVLIDEAQFF 94 (201)
T ss_pred ------cccceecCChHHHHHHHHhcccCC-CcCEEEEehhHhC
Confidence 113567777777877776533222 2889999999953
No 282
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.33 E-value=0.018 Score=54.93 Aligned_cols=16 Identities=25% Similarity=0.382 Sum_probs=14.6
Q ss_pred CEEEEccCCCchhHHh
Q 013858 160 DLLGCAETGSGKTAAF 175 (435)
Q Consensus 160 ~vii~~~TGsGKT~~~ 175 (435)
+.|+.||.|+|||+.+
T Consensus 50 SmIl~GPPG~GKTTlA 65 (436)
T COG2256 50 SMILWGPPGTGKTTLA 65 (436)
T ss_pred eeEEECCCCCCHHHHH
Confidence 6999999999999855
No 283
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.32 E-value=0.038 Score=55.42 Aligned_cols=40 Identities=13% Similarity=0.156 Sum_probs=26.3
Q ss_pred CCCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEc
Q 013858 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (435)
Q Consensus 267 l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~S 307 (435)
..+++++||||+|.+... -...+.+.+..-++...+|+.+
T Consensus 114 ~~~~KVvIIDEah~Ls~~-A~NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 114 SSKFKVYIIDEVHMLSNS-AFNALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred cCCceEEEEeChHhCCHH-HHHHHHHHHhCCCCCeEEEEEe
Confidence 457899999999977543 2345566666656666555544
No 284
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.31 E-value=0.024 Score=54.52 Aligned_cols=41 Identities=12% Similarity=0.310 Sum_probs=26.3
Q ss_pred CCCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEcc
Q 013858 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSA 308 (435)
Q Consensus 267 l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SA 308 (435)
....++|||||+|.+.. .....+..++...+...++|+.+.
T Consensus 123 ~~~~~vlilDe~~~l~~-~~~~~L~~~le~~~~~~~~Il~~~ 163 (337)
T PRK12402 123 SADYKTILLDNAEALRE-DAQQALRRIMEQYSRTCRFIIATR 163 (337)
T ss_pred CCCCcEEEEeCcccCCH-HHHHHHHHHHHhccCCCeEEEEeC
Confidence 34578999999997643 234456666666666666555443
No 285
>PHA00729 NTP-binding motif containing protein
Probab=96.28 E-value=0.027 Score=50.27 Aligned_cols=74 Identities=12% Similarity=0.227 Sum_probs=38.3
Q ss_pred cEEEECcHHHHHHHHcCCCCCCCceEEEEecCC-cccCCCCH----HHHHHHHHhCCCCCeEEEEcccccHHHHHHHHH
Q 013858 247 SIVVATPGRFLDHLQQGNTSLSRVSFVILDEAD-RMLDMGFE----PQIREVMQNLPDKHQTLLFSATMPVEIEALAQE 320 (435)
Q Consensus 247 ~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah-~~~~~~~~----~~i~~i~~~~~~~~q~i~~SATl~~~~~~~~~~ 320 (435)
..+|.+.+.|++.+....-...+++++||||+= ......+. .....+...++..++++.+...-+..+...++.
T Consensus 60 ~~~fid~~~Ll~~L~~a~~~~~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~ 138 (226)
T PHA00729 60 NSYFFELPDALEKIQDAIDNDYRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLRE 138 (226)
T ss_pred cEEEEEHHHHHHHHHHHHhcCCCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHh
Confidence 456666666666664322123456899999943 11111111 111122223344456777777766676666655
No 286
>PRK09183 transposase/IS protein; Provisional
Probab=96.27 E-value=0.041 Score=50.78 Aligned_cols=21 Identities=19% Similarity=0.208 Sum_probs=17.8
Q ss_pred HhcCCCEEEEccCCCchhHHh
Q 013858 155 ALSGRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 155 ~~~~~~vii~~~TGsGKT~~~ 175 (435)
+..+.++++.||+|+|||..+
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa 119 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLA 119 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHH
Confidence 446789999999999999854
No 287
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.26 E-value=0.013 Score=51.88 Aligned_cols=16 Identities=31% Similarity=0.324 Sum_probs=14.3
Q ss_pred CEEEEccCCCchhHHh
Q 013858 160 DLLGCAETGSGKTAAF 175 (435)
Q Consensus 160 ~vii~~~TGsGKT~~~ 175 (435)
++++.||.|+|||+.+
T Consensus 52 h~lf~GPPG~GKTTLA 67 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLA 67 (233)
T ss_dssp EEEEESSTTSSHHHHH
T ss_pred eEEEECCCccchhHHH
Confidence 5999999999999844
No 288
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=96.25 E-value=0.044 Score=53.14 Aligned_cols=136 Identities=20% Similarity=0.227 Sum_probs=65.3
Q ss_pred CEEEEccCCCchhHHhHHHHHHHHHhcCCCCCC---CCCeEEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHH
Q 013858 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRG---DGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIA 236 (435)
Q Consensus 160 ~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~---~~~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~ 236 (435)
-.++.||.|.||++.+ ..+...++........ ..+..+.+++.-..+. .+. ...++++.+..........
T Consensus 43 A~Lf~Gp~G~GK~~lA-~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~----~i~--~~~HPDl~~i~~~~~~~~~ 115 (365)
T PRK07471 43 AWLIGGPQGIGKATLA-YRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVAR----RIA--AGAHGGLLTLERSWNEKGK 115 (365)
T ss_pred eEEEECCCCCCHHHHH-HHHHHHHhCCCCCCCCccccccccccCCCCChHHH----HHH--ccCCCCeEEEecccccccc
Confidence 3899999999999764 4444555543211110 0122333344322222 122 1233555544321111000
Q ss_pred HHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEcccc
Q 013858 237 EQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATM 310 (435)
Q Consensus 237 ~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SATl 310 (435)
.....|.|-..-.+.+.+.. ........+|||||+|++ +..-...+.+.+...+....+|++|...
T Consensus 116 ------~~~~~I~VdqiR~l~~~~~~-~~~~~~~kVviIDead~m-~~~aanaLLK~LEepp~~~~~IL~t~~~ 181 (365)
T PRK07471 116 ------RLRTVITVDEVRELISFFGL-TAAEGGWRVVIVDTADEM-NANAANALLKVLEEPPARSLFLLVSHAP 181 (365)
T ss_pred ------cccccccHHHHHHHHHHhCc-CcccCCCEEEEEechHhc-CHHHHHHHHHHHhcCCCCeEEEEEECCc
Confidence 00123333232223333322 223457889999999977 3334456666776666566566655443
No 289
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=96.25 E-value=0.013 Score=61.86 Aligned_cols=70 Identities=23% Similarity=0.169 Sum_probs=51.6
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHh
Q 013858 143 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (435)
Q Consensus 143 ~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~ 218 (435)
.+++-|++++.. ....++|.|..|||||.+. +.-+.+++... .-...++|+++.|+.+|..+.+++..+.
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL-~~Ria~Li~~~---~v~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVI-TNKIAHLIRGC---GYQARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHH-HHHHHHHHHhc---CCCHHHeeeEechHHHHHHHHHHHHHHh
Confidence 367889998875 3456888899999999875 44444545421 1123579999999999999999997764
No 290
>PRK14873 primosome assembly protein PriA; Provisional
Probab=96.23 E-value=0.028 Score=58.78 Aligned_cols=76 Identities=21% Similarity=0.165 Sum_probs=65.0
Q ss_pred hhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhC-C-CcEEEecCCCCHHHHHHHHHHHHcCCCcE
Q 013858 350 NEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE-G-LHAVALHGGRNQSDRESALRDFRNGSTNI 427 (435)
Q Consensus 350 ~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~-~-~~v~~lh~~~~~~~R~~~~~~f~~g~~~V 427 (435)
..|....++++.+.... ++++||.++.+..+.++.+.|+.. | ..+..+|++++..+|.+...+.++|+.+|
T Consensus 171 SGKTevyl~~i~~~l~~-------Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~I 243 (665)
T PRK14873 171 EDWARRLAAAAAATLRA-------GRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARV 243 (665)
T ss_pred CcHHHHHHHHHHHHHHc-------CCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcE
Confidence 35677777777776643 345999999999999999999875 4 67999999999999999999999999999
Q ss_pred EEEcC
Q 013858 428 LVFSY 432 (435)
Q Consensus 428 LVaT~ 432 (435)
+|.|=
T Consensus 244 ViGtR 248 (665)
T PRK14873 244 VVGTR 248 (665)
T ss_pred EEEcc
Confidence 99984
No 291
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.23 E-value=0.022 Score=57.83 Aligned_cols=39 Identities=13% Similarity=0.221 Sum_probs=27.5
Q ss_pred CCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEc
Q 013858 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (435)
Q Consensus 268 ~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~S 307 (435)
.+++++||||||++... -...+.+.+...++.+.+|+.+
T Consensus 118 ~~~kV~iIDE~~~ls~~-a~naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGH-SFNALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHH-HHHHHHHHHhccCCCeEEEEEE
Confidence 46899999999987543 2345666777767777666654
No 292
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.21 E-value=0.023 Score=53.97 Aligned_cols=64 Identities=28% Similarity=0.289 Sum_probs=40.7
Q ss_pred HHHHCCCCCCcHHHHHHHHHHh-cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhh
Q 013858 135 DIEFHEYTRPTSIQAQAMPVAL-SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL 206 (435)
Q Consensus 135 ~l~~~~~~~p~~~Q~~~i~~~~-~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~l 206 (435)
.+...|. .++.|...+..+. .+.+++++|+||||||+. +-.++..+... +.+.+++++-.+.||
T Consensus 122 ~lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTl-l~aL~~~i~~~-----~~~~rivtiEd~~El 186 (323)
T PRK13833 122 DYVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTL-ANAVIAEIVAS-----APEDRLVILEDTAEI 186 (323)
T ss_pred HHHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHHhcC-----CCCceEEEecCCccc
Confidence 3444544 4567777776665 556899999999999974 23444443221 113467777777776
No 293
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.21 E-value=0.026 Score=56.70 Aligned_cols=47 Identities=17% Similarity=0.248 Sum_probs=25.8
Q ss_pred CceEEEEecCCcccCCC-CHHHHHHHHHhCC-CCCeEEEEcccccHHHH
Q 013858 269 RVSFVILDEADRMLDMG-FEPQIREVMQNLP-DKHQTLLFSATMPVEIE 315 (435)
Q Consensus 269 ~~~~iIiDEah~~~~~~-~~~~i~~i~~~~~-~~~q~i~~SATl~~~~~ 315 (435)
++++|||||+|.+.... ....+..++..+. ...++|+.|...|..+.
T Consensus 211 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~ 259 (450)
T PRK00149 211 SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELP 259 (450)
T ss_pred cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHH
Confidence 57799999999764432 2233444444332 23455554544454543
No 294
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.20 E-value=0.11 Score=51.11 Aligned_cols=83 Identities=19% Similarity=0.201 Sum_probs=41.9
Q ss_pred CCCceEEEEecCCcccCCC-CHHHHHHHHHhCCCCCeEEEEccccc-HHHHHHHHHHcCCCeEEEeCCCCCCCCceEEEE
Q 013858 267 LSRVSFVILDEADRMLDMG-FEPQIREVMQNLPDKHQTLLFSATMP-VEIEALAQEYLTDPVQVKVGKVSSPTANVIQIL 344 (435)
Q Consensus 267 l~~~~~iIiDEah~~~~~~-~~~~i~~i~~~~~~~~q~i~~SATl~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~ 344 (435)
+.+++.++||.+=+..... ....+..+.....+...++.++||.. ..+.+.+..|-.-++ -.-.+
T Consensus 267 l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f~~~~~-------------~~~I~ 333 (420)
T PRK14721 267 LRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQGHGI-------------HGCII 333 (420)
T ss_pred hcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHhcCCCC-------------CEEEE
Confidence 5567899999874332111 12233333222223345688999974 445555655532111 11233
Q ss_pred EEcChhhHHHHHHHHHHH
Q 013858 345 EKVSENEKVDRLLALLVE 362 (435)
Q Consensus 345 ~~~~~~~k~~~l~~~l~~ 362 (435)
.+++...+...++..+..
T Consensus 334 TKlDEt~~~G~~l~~~~~ 351 (420)
T PRK14721 334 TKVDEAASLGIALDAVIR 351 (420)
T ss_pred EeeeCCCCccHHHHHHHH
Confidence 444555556666666544
No 295
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.20 E-value=0.16 Score=42.81 Aligned_cols=54 Identities=22% Similarity=0.392 Sum_probs=41.9
Q ss_pred CCCCceEEEEecCCcccCCCC--HHHHHHHHHhCCCCCeEEEEcccccHHHHHHHH
Q 013858 266 SLSRVSFVILDEADRMLDMGF--EPQIREVMQNLPDKHQTLLFSATMPVEIEALAQ 319 (435)
Q Consensus 266 ~l~~~~~iIiDEah~~~~~~~--~~~i~~i~~~~~~~~q~i~~SATl~~~~~~~~~ 319 (435)
....+++||+||+=..++.++ ...+..++...|+..-+|+..-..|+.+.+.+.
T Consensus 92 ~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD 147 (159)
T cd00561 92 ASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAAD 147 (159)
T ss_pred hcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCc
Confidence 346799999999987767664 467888888888888788888888888776543
No 296
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.17 E-value=0.036 Score=56.94 Aligned_cols=40 Identities=18% Similarity=0.213 Sum_probs=27.5
Q ss_pred CCCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEc
Q 013858 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (435)
Q Consensus 267 l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~S 307 (435)
..+++++||||+|++... -...+.+.+...++...+|+.+
T Consensus 116 ~~~~KVvIIDEah~Lt~~-A~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTA-GFNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred cCCceEEEEECCCcCCHH-HHHHHHHHHhcCCCCeEEEEEe
Confidence 457899999999987543 3445666666666666555555
No 297
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=96.16 E-value=0.027 Score=48.85 Aligned_cols=146 Identities=17% Similarity=0.160 Sum_probs=78.6
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHH
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIA 236 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~ 236 (435)
....+++.+++|.|||+++ +.+..+.... |.++++++=.+--.. ..+...+.. ++++.... .|....
T Consensus 21 ~~g~v~v~~g~GkGKtt~a-~g~a~ra~g~-------G~~V~ivQFlKg~~~--~GE~~~l~~-l~~v~~~~--~g~~~~ 87 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAA-FGMALRAVGH-------GKKVGVVQFIKGAWS--TGERNLLEF-GGGVEFHV--MGTGFT 87 (191)
T ss_pred cCCeEEEECCCCCChHHHH-HHHHHHHHHC-------CCeEEEEEEecCCCc--cCHHHHHhc-CCCcEEEE--CCCCCc
Confidence 4557999999999999886 4444444443 678888884442211 011122211 11222222 111100
Q ss_pred HHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCCC--HHHHHHHHHhCCCCCeEEEEcccccHHH
Q 013858 237 EQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGF--EPQIREVMQNLPDKHQTLLFSATMPVEI 314 (435)
Q Consensus 237 ~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~~--~~~i~~i~~~~~~~~q~i~~SATl~~~~ 314 (435)
-. .....--.......+..... .+.-..|++||+||+=..++.|+ ...+..++...|+..-+|+.--..|+++
T Consensus 88 ~~----~~~~~e~~~~~~~~~~~a~~-~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~L 162 (191)
T PRK05986 88 WE----TQDRERDIAAAREGWEEAKR-MLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPREL 162 (191)
T ss_pred cc----CCCcHHHHHHHHHHHHHHHH-HHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHH
Confidence 00 00000000011122222221 22345799999999998778775 4578888888887777777666778777
Q ss_pred HHHHHH
Q 013858 315 EALAQE 320 (435)
Q Consensus 315 ~~~~~~ 320 (435)
.+.+..
T Consensus 163 ie~ADl 168 (191)
T PRK05986 163 IEAADL 168 (191)
T ss_pred HHhCch
Confidence 765543
No 298
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.15 E-value=0.05 Score=46.48 Aligned_cols=53 Identities=23% Similarity=0.430 Sum_probs=41.3
Q ss_pred CCCceEEEEecCCcccCCCC--HHHHHHHHHhCCCCCeEEEEcccccHHHHHHHH
Q 013858 267 LSRVSFVILDEADRMLDMGF--EPQIREVMQNLPDKHQTLLFSATMPVEIEALAQ 319 (435)
Q Consensus 267 l~~~~~iIiDEah~~~~~~~--~~~i~~i~~~~~~~~q~i~~SATl~~~~~~~~~ 319 (435)
-..+++||+||+=..++.|+ ...+..++...|+..-+|+..-..|+.+.+.+.
T Consensus 95 ~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD 149 (173)
T TIGR00708 95 DPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELAD 149 (173)
T ss_pred cCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCc
Confidence 35799999999997777774 457888888888888777777778887776554
No 299
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=96.15 E-value=0.048 Score=52.63 Aligned_cols=41 Identities=24% Similarity=0.273 Sum_probs=28.2
Q ss_pred CCCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEcc
Q 013858 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSA 308 (435)
Q Consensus 267 l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SA 308 (435)
...+.++||||||+|- ..-...+.+.+...+....+|++|.
T Consensus 139 ~g~~rVviIDeAd~l~-~~aanaLLk~LEEpp~~~~fiLit~ 179 (351)
T PRK09112 139 DGNWRIVIIDPADDMN-RNAANAILKTLEEPPARALFILISH 179 (351)
T ss_pred cCCceEEEEEchhhcC-HHHHHHHHHHHhcCCCCceEEEEEC
Confidence 4578999999999873 3334567777777666665566653
No 300
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.15 E-value=0.033 Score=55.56 Aligned_cols=51 Identities=12% Similarity=0.333 Sum_probs=28.3
Q ss_pred CceEEEEecCCcccCCC-CHHHHHHHHHhCC-CCCeEEEEcccccHHHHHHHH
Q 013858 269 RVSFVILDEADRMLDMG-FEPQIREVMQNLP-DKHQTLLFSATMPVEIEALAQ 319 (435)
Q Consensus 269 ~~~~iIiDEah~~~~~~-~~~~i~~i~~~~~-~~~q~i~~SATl~~~~~~~~~ 319 (435)
++++++|||+|.+.+.. ....+..++..+. ...++|+.|-..|..+..+..
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~ 246 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQD 246 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHH
Confidence 47799999999775432 2233444444332 234555555455555544433
No 301
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.13 E-value=0.065 Score=55.43 Aligned_cols=40 Identities=15% Similarity=0.198 Sum_probs=27.0
Q ss_pred CCCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEc
Q 013858 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (435)
Q Consensus 267 l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~S 307 (435)
..+++++||||+|++... -...+.+.+...++...+|+.+
T Consensus 117 ~~~~KVvIIdev~~Lt~~-a~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTN-AFNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred cCCceEEEEEChhhCCHH-HHHHHHHHHHcCCCCeEEEEEe
Confidence 457899999999977432 3456666666666666555544
No 302
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.13 E-value=0.025 Score=52.32 Aligned_cols=17 Identities=24% Similarity=0.317 Sum_probs=15.0
Q ss_pred CCEEEEccCCCchhHHh
Q 013858 159 RDLLGCAETGSGKTAAF 175 (435)
Q Consensus 159 ~~vii~~~TGsGKT~~~ 175 (435)
.++++.||+|+|||+.+
T Consensus 43 ~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVA 59 (261)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 46999999999999855
No 303
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.11 E-value=0.026 Score=58.81 Aligned_cols=132 Identities=20% Similarity=0.219 Sum_probs=72.8
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHH
Q 013858 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAE 237 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 237 (435)
.+=++|++|.|+|||+ ++..+..... .+..+.++.=- +--++.++-+..+........ .+....-
T Consensus 37 ~RL~li~APAGfGKtt--l~aq~~~~~~-------~~~~v~Wlsld-e~dndp~rF~~yLi~al~~~~-----p~~~~~a 101 (894)
T COG2909 37 YRLILISAPAGFGKTT--LLAQWRELAA-------DGAAVAWLSLD-ESDNDPARFLSYLIAALQQAT-----PTLGDEA 101 (894)
T ss_pred ceEEEEeCCCCCcHHH--HHHHHHHhcC-------cccceeEeecC-CccCCHHHHHHHHHHHHHHhC-----ccccHHH
Confidence 3459999999999998 4555543222 24556665521 222334444444433221000 0111111
Q ss_pred HHHHHhCCCcEEEECc---HHHHHHHHcCCCCCCCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEccccc
Q 013858 238 QRSELRGGVSIVVATP---GRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMP 311 (435)
Q Consensus 238 ~~~~~~~~~~I~v~T~---~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SATl~ 311 (435)
+ .+.. .+..+.-- ..|+..+.. ..+-=++|||+.|++.+......+..++++.|++..+|+.|=+-|
T Consensus 102 ~--~l~q-~~~~~~l~~l~~~L~~Ela~----~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP 171 (894)
T COG2909 102 Q--TLLQ-KHQYVSLESLLSSLLNELAS----YEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRP 171 (894)
T ss_pred H--HHHH-hcccccHHHHHHHHHHHHHh----hcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCC
Confidence 1 1111 11222111 122232222 223359999999999998888999999999999999888886643
No 304
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.05 E-value=0.04 Score=56.88 Aligned_cols=40 Identities=13% Similarity=0.185 Sum_probs=27.7
Q ss_pred CCCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEc
Q 013858 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (435)
Q Consensus 267 l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~S 307 (435)
+.++++|||||+|++... -...+.+.+...++.+.+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~-a~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTA-AFNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHH-HHHHHHHHHHhCCCCeEEEEEe
Confidence 567899999999987432 2345666666666777666655
No 305
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.04 E-value=0.028 Score=58.28 Aligned_cols=40 Identities=13% Similarity=0.226 Sum_probs=27.2
Q ss_pred CCCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEc
Q 013858 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (435)
Q Consensus 267 l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~S 307 (435)
+.++++|||||+|++.. +-...+.+.+...+..+.+|+.+
T Consensus 117 ~gk~KVIIIDEad~Ls~-~A~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 117 AGKYKVYIIDEVHMLSK-SAFNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hCCcEEEEEECccccCH-HHHHHHHHHHHhCCCCcEEEEEe
Confidence 45789999999997643 22345666666666677666654
No 306
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.01 E-value=0.047 Score=55.63 Aligned_cols=40 Identities=13% Similarity=0.194 Sum_probs=27.4
Q ss_pred CCCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEc
Q 013858 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (435)
Q Consensus 267 l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~S 307 (435)
..+++++||||||++... -...+.+.+...+....+|+.+
T Consensus 117 ~g~~kViIIDEa~~ls~~-a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQ-SFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred cCCcEEEEEechhhccHH-HHHHHHHHHhcCCCCceEEEEE
Confidence 457889999999987432 3445666666666666666555
No 307
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.00 E-value=0.036 Score=53.93 Aligned_cols=40 Identities=15% Similarity=0.238 Sum_probs=25.2
Q ss_pred CCCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEc
Q 013858 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (435)
Q Consensus 267 l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~S 307 (435)
..++.++||||+|++.... ...+.+.+...+...++|+.+
T Consensus 117 ~~~~kviIIDEa~~l~~~a-~naLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 117 KSRFKVYLIDEVHMLSRHS-FNALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred cCCceEEEEEChhhcCHHH-HHHHHHHHhcCCCCeEEEEEc
Confidence 3567899999999875322 234555555555566555544
No 308
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=95.99 E-value=0.068 Score=51.19 Aligned_cols=42 Identities=19% Similarity=0.168 Sum_probs=27.8
Q ss_pred CCCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEccc
Q 013858 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSAT 309 (435)
Q Consensus 267 l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT 309 (435)
...++++|||+||+|... -...+.+.+..-++..-+|+.|..
T Consensus 130 ~~~~kV~iI~~ae~m~~~-AaNaLLKtLEEPp~~t~fiL~t~~ 171 (342)
T PRK06964 130 RGGARVVVLYPAEALNVA-AANALLKTLEEPPPGTVFLLVSAR 171 (342)
T ss_pred cCCceEEEEechhhcCHH-HHHHHHHHhcCCCcCcEEEEEECC
Confidence 457899999999988432 345666666665666655555544
No 309
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=95.99 E-value=0.036 Score=62.57 Aligned_cols=122 Identities=24% Similarity=0.233 Sum_probs=75.8
Q ss_pred CcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcCCC
Q 013858 144 PTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDS 223 (435)
Q Consensus 144 p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~~~ 223 (435)
.++-|.++|.. .++++++.|..|||||.+.+--++..+... ....++++++-|+..|..+.+++.+.....
T Consensus 2 ~t~~Q~~ai~~--~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~-----~~~~~il~~tFt~~aa~e~~~ri~~~l~~~-- 72 (1232)
T TIGR02785 2 WTDEQWQAIYT--RGQNILVSASAGSGKTAVLVERIIKKILRG-----VDIDRLLVVTFTNAAAREMKERIEEALQKA-- 72 (1232)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcC-----CCHhhEEEEeccHHHHHHHHHHHHHHHHHH--
Confidence 47889999984 688999999999999987644455444321 112469999999999999998886644321
Q ss_pred ceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCc--eEEEEecCC
Q 013858 224 FKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRV--SFVILDEAD 279 (435)
Q Consensus 224 ~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~--~~iIiDEah 279 (435)
+. ...........+..-...-|+|...++..+.+.....-.+ .+=|.||..
T Consensus 73 ~~-----~~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e 125 (1232)
T TIGR02785 73 LQ-----QEPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTE 125 (1232)
T ss_pred Hh-----cCchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHH
Confidence 11 0111111222233334677889988876554433221121 344688776
No 310
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.98 E-value=0.078 Score=52.60 Aligned_cols=16 Identities=25% Similarity=0.382 Sum_probs=14.3
Q ss_pred CEEEEccCCCchhHHh
Q 013858 160 DLLGCAETGSGKTAAF 175 (435)
Q Consensus 160 ~vii~~~TGsGKT~~~ 175 (435)
++++.||+|+|||+.+
T Consensus 38 ~ilL~GppGtGKTtLA 53 (413)
T PRK13342 38 SMILWGPPGTGKTTLA 53 (413)
T ss_pred eEEEECCCCCCHHHHH
Confidence 6999999999999854
No 311
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=95.98 E-value=0.024 Score=59.26 Aligned_cols=79 Identities=18% Similarity=0.263 Sum_probs=69.0
Q ss_pred cChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhC-CCcEEEecCCCCHHHHHHHHHHHHcCCC
Q 013858 347 VSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE-GLHAVALHGGRNQSDRESALRDFRNGST 425 (435)
Q Consensus 347 ~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~-~~~v~~lh~~~~~~~R~~~~~~f~~g~~ 425 (435)
+.-..|.+..++++.+....++ .+||-++-+....++...++.. |.++..+|+++++.+|.....+.++|+.
T Consensus 225 vTGSGKTEvYl~~i~~~L~~Gk-------qvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~ 297 (730)
T COG1198 225 VTGSGKTEVYLEAIAKVLAQGK-------QVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEA 297 (730)
T ss_pred CCCCcHHHHHHHHHHHHHHcCC-------EEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCc
Confidence 4456678888888888775543 4999999999999999999876 8999999999999999999999999999
Q ss_pred cEEEEcC
Q 013858 426 NILVFSY 432 (435)
Q Consensus 426 ~VLVaT~ 432 (435)
+|+|.|=
T Consensus 298 ~vVIGtR 304 (730)
T COG1198 298 RVVIGTR 304 (730)
T ss_pred eEEEEec
Confidence 9999984
No 312
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=95.98 E-value=0.013 Score=53.81 Aligned_cols=45 Identities=20% Similarity=0.356 Sum_probs=30.3
Q ss_pred CCCCCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEcccc
Q 013858 265 TSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATM 310 (435)
Q Consensus 265 ~~l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SATl 310 (435)
.....+..||+||||.|... -...+++.+...+....+++.+--+
T Consensus 125 ~~~~~fKiiIlDEcdsmtsd-aq~aLrr~mE~~s~~trFiLIcnyl 169 (346)
T KOG0989|consen 125 YPCPPFKIIILDECDSMTSD-AQAALRRTMEDFSRTTRFILICNYL 169 (346)
T ss_pred CCCCcceEEEEechhhhhHH-HHHHHHHHHhccccceEEEEEcCCh
Confidence 34667899999999976432 2345566666666666777776654
No 313
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=95.97 E-value=0.032 Score=55.12 Aligned_cols=145 Identities=12% Similarity=0.238 Sum_probs=81.2
Q ss_pred CEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChh-hHHHHHHHHHHHhhcCCCceEEEEECCCCHHHH
Q 013858 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRE-LAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQ 238 (435)
Q Consensus 160 ~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~-la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 238 (435)
-.++.|..|||||.+..+-++..+... ..+.+++++-|+.. +...+...+......+ ++....-...... .
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~-----~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~-g~~~~~~~~~~~~--~ 74 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAIN-----KKQQNILAARKVQNSIRDSVFKDIENLLSIE-GINYEFKKSKSSM--E 74 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhc-----CCCcEEEEEehhhhHHHHHHHHHHHHHHHHc-CChhheeecCCcc--E
Confidence 368899999999998877777766663 12567888888874 7777777776655443 2321111111100 0
Q ss_pred HHHHhC-CCcEEEECc-HHHHHHHHcCCCCCCCceEEEEecCCcccCCCCHHHHHHHHHhCC--CCCeEEEEcccccHHH
Q 013858 239 RSELRG-GVSIVVATP-GRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLP--DKHQTLLFSATMPVEI 314 (435)
Q Consensus 239 ~~~~~~-~~~I~v~T~-~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~--~~~q~i~~SATl~~~~ 314 (435)
. .+.. +..|+|..- +...+ +. ....+.++.+|||..+.. ..+..++..++ ...+.+++|.+++...
T Consensus 75 i-~~~~~g~~i~f~g~~d~~~~-ik----~~~~~~~~~idEa~~~~~----~~~~~l~~rlr~~~~~~~i~~t~NP~~~~ 144 (396)
T TIGR01547 75 I-KILNTGKKFIFKGLNDKPNK-LK----SGAGIAIIWFEEASQLTF----EDIKELIPRLRETGGKKFIIFSSNPESPL 144 (396)
T ss_pred E-EecCCCeEEEeecccCChhH-hh----CcceeeeehhhhhhhcCH----HHHHHHHHHhhccCCccEEEEEcCcCCCc
Confidence 0 0112 445666553 22211 11 123369999999997632 34444444444 2222478888886533
Q ss_pred HHHHHHHc
Q 013858 315 EALAQEYL 322 (435)
Q Consensus 315 ~~~~~~~~ 322 (435)
.-+.+.|.
T Consensus 145 ~w~~~~f~ 152 (396)
T TIGR01547 145 HWVKKRFI 152 (396)
T ss_pred cHHHHHHH
Confidence 33445554
No 314
>CHL00181 cbbX CbbX; Provisional
Probab=95.94 E-value=0.049 Score=51.06 Aligned_cols=18 Identities=28% Similarity=0.361 Sum_probs=15.6
Q ss_pred CCCEEEEccCCCchhHHh
Q 013858 158 GRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~ 175 (435)
+.++++.||+|+|||+.+
T Consensus 59 ~~~ill~G~pGtGKT~lA 76 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVA 76 (287)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 456999999999999865
No 315
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=95.94 E-value=0.099 Score=49.72 Aligned_cols=41 Identities=12% Similarity=0.144 Sum_probs=28.1
Q ss_pred CCCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEcc
Q 013858 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSA 308 (435)
Q Consensus 267 l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SA 308 (435)
...++++|||+||+|... -...+.+.+..-|+...+|+.|.
T Consensus 105 ~g~~KV~iI~~a~~m~~~-AaNaLLKtLEEPp~~~~fiL~t~ 145 (325)
T PRK06871 105 QGGNKVVYIQGAERLTEA-AANALLKTLEEPRPNTYFLLQAD 145 (325)
T ss_pred cCCceEEEEechhhhCHH-HHHHHHHHhcCCCCCeEEEEEEC
Confidence 456899999999987432 35566777776566665555544
No 316
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.94 E-value=0.028 Score=52.21 Aligned_cols=32 Identities=28% Similarity=0.317 Sum_probs=22.1
Q ss_pred CcHHHHHHHHHHh----cCC-CEEEEccCCCchhHHh
Q 013858 144 PTSIQAQAMPVAL----SGR-DLLGCAETGSGKTAAF 175 (435)
Q Consensus 144 p~~~Q~~~i~~~~----~~~-~vii~~~TGsGKT~~~ 175 (435)
+++.+.+++..+. .+. .++++|+.|+|||+..
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 24 PSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLI 60 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH
Confidence 4555566665543 333 5899999999999854
No 317
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=95.92 E-value=0.041 Score=58.82 Aligned_cols=71 Identities=27% Similarity=0.267 Sum_probs=53.0
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhh
Q 013858 143 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSR 219 (435)
Q Consensus 143 ~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~ 219 (435)
.+++-|++++.. ...+++|.|..|||||.+. +--+.++...... ...++|+++-|+..|..+.+++.++..
T Consensus 4 ~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l-~~ria~Li~~~~i---~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 4 HLNPEQREAVKT--TEGPLLIMAGAGSGKTRVL-THRIAHLIAEKNV---APWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred ccCHHHHHHHhC--CCCCEEEEeCCCCCHHHHH-HHHHHHHHHcCCC---CHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 478899999875 3467999999999999875 4444455543211 135799999999999999999987754
No 318
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.91 E-value=0.036 Score=51.90 Aligned_cols=18 Identities=33% Similarity=0.436 Sum_probs=15.0
Q ss_pred CCCEEEEccCCCchhHHh
Q 013858 158 GRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~ 175 (435)
++.++++||||+|||+..
T Consensus 194 ~~vi~~vGptGvGKTTt~ 211 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTL 211 (282)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 346889999999999864
No 319
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.91 E-value=0.048 Score=55.39 Aligned_cols=59 Identities=19% Similarity=0.265 Sum_probs=53.8
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhC-CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcC
Q 013858 374 FPLTIVFVERKTRCDEVSEALVAE-GLHAVALHGGRNQSDRESALRDFRNGSTNILVFSY 432 (435)
Q Consensus 374 ~~~~lVF~~~~~~~~~l~~~L~~~-~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~ 432 (435)
++++||.++++.-+.++++.|++. +..+..+||+++..+|.++.....+|+.+|+|+|.
T Consensus 25 g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTr 84 (505)
T TIGR00595 25 GKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTR 84 (505)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECCh
Confidence 345999999999999999999865 77899999999999999999999999999999995
No 320
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=95.87 E-value=0.038 Score=58.54 Aligned_cols=69 Identities=19% Similarity=0.110 Sum_probs=50.9
Q ss_pred CcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHh
Q 013858 144 PTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (435)
Q Consensus 144 p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~ 218 (435)
+++-|++++.. ...+++|.|..|||||.+. +--+.+++.... .....+|+++.|+..|.++.+++.+..
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L-~~ri~~ll~~~~---~~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVI-TNKIAYLIQNCG---YKARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHH-HHHHHHHHHhcC---CCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 57889998865 4567999999999999875 444445453211 124579999999999999999997654
No 321
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.86 E-value=0.06 Score=53.07 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=17.6
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHH
Q 013858 159 RDLLGCAETGSGKTAAFTIPMIQHC 183 (435)
Q Consensus 159 ~~vii~~~TGsGKT~~~~~~~l~~~ 183 (435)
.+++|.|++|+|||+.. --++..+
T Consensus 56 ~~~lI~G~~GtGKT~l~-~~v~~~l 79 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTV-KKVFEEL 79 (394)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHH
Confidence 56999999999999853 3344443
No 322
>PRK06620 hypothetical protein; Validated
Probab=95.86 E-value=0.023 Score=50.83 Aligned_cols=17 Identities=35% Similarity=0.165 Sum_probs=14.4
Q ss_pred CCEEEEccCCCchhHHh
Q 013858 159 RDLLGCAETGSGKTAAF 175 (435)
Q Consensus 159 ~~vii~~~TGsGKT~~~ 175 (435)
+.++++||+|+|||...
T Consensus 45 ~~l~l~Gp~G~GKThLl 61 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLT 61 (214)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45999999999999843
No 323
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.86 E-value=0.066 Score=54.26 Aligned_cols=15 Identities=33% Similarity=0.346 Sum_probs=13.6
Q ss_pred EEEEccCCCchhHHh
Q 013858 161 LLGCAETGSGKTAAF 175 (435)
Q Consensus 161 vii~~~TGsGKT~~~ 175 (435)
++++||.|+|||+++
T Consensus 39 ~Lf~GppGtGKTTlA 53 (504)
T PRK14963 39 YLFSGPRGVGKTTTA 53 (504)
T ss_pred EEEECCCCCCHHHHH
Confidence 599999999999865
No 324
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.86 E-value=0.047 Score=54.09 Aligned_cols=48 Identities=17% Similarity=0.281 Sum_probs=25.8
Q ss_pred CceEEEEecCCcccCCC-CHHHHHHHHHhC-CCCCeEEEEcccccHHHHH
Q 013858 269 RVSFVILDEADRMLDMG-FEPQIREVMQNL-PDKHQTLLFSATMPVEIEA 316 (435)
Q Consensus 269 ~~~~iIiDEah~~~~~~-~~~~i~~i~~~~-~~~~q~i~~SATl~~~~~~ 316 (435)
++++|||||+|.+.... ....+..++..+ ....++|+.|...|..+..
T Consensus 199 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~ 248 (405)
T TIGR00362 199 SVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPG 248 (405)
T ss_pred hCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhh
Confidence 46799999999765432 223344444433 2345555544444444443
No 325
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.85 E-value=0.039 Score=52.41 Aligned_cols=66 Identities=26% Similarity=0.303 Sum_probs=42.1
Q ss_pred HHHHHHCCCCCCcHHHHHHHHHHh-cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhh
Q 013858 133 MKDIEFHEYTRPTSIQAQAMPVAL-SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL 206 (435)
Q Consensus 133 ~~~l~~~~~~~p~~~Q~~~i~~~~-~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~l 206 (435)
+..+...|. +++.|...+..+. .+.+++++|+||||||+. +-.++..+... +...+++++-.+.++
T Consensus 124 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~aL~~~~~~~-----~~~~rivtIEd~~El 190 (319)
T PRK13894 124 LDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTTL-VNAIINEMVIQ-----DPTERVFIIEDTGEI 190 (319)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHhhhhc-----CCCceEEEEcCCCcc
Confidence 345555555 3567777777654 567899999999999974 23444433221 123467777777776
No 326
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.85 E-value=0.19 Score=43.19 Aligned_cols=55 Identities=16% Similarity=0.260 Sum_probs=30.2
Q ss_pred CCceEEEEecCCccc-CCCCHHHHHHHHHhCCCCCeEEEEcccccHHHHHHHHHHc
Q 013858 268 SRVSFVILDEADRML-DMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYL 322 (435)
Q Consensus 268 ~~~~~iIiDEah~~~-~~~~~~~i~~i~~~~~~~~q~i~~SATl~~~~~~~~~~~~ 322 (435)
..++++|+|...... +......+..+.....+..-++.+.|.-.......+..+.
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~~~~ 136 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAFN 136 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHH
Confidence 357899999988542 2223333434433333444566777765555545555553
No 327
>PRK04195 replication factor C large subunit; Provisional
Probab=95.85 E-value=0.07 Score=54.08 Aligned_cols=18 Identities=33% Similarity=0.372 Sum_probs=15.3
Q ss_pred CCCEEEEccCCCchhHHh
Q 013858 158 GRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~ 175 (435)
.+.+++.||+|+|||+.+
T Consensus 39 ~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLA 56 (482)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 356999999999999854
No 328
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=95.82 E-value=0.015 Score=51.30 Aligned_cols=42 Identities=29% Similarity=0.402 Sum_probs=27.7
Q ss_pred CCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEcccc
Q 013858 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATM 310 (435)
Q Consensus 268 ~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SATl 310 (435)
.+.+.||+||||.|.+ |-...+++.+....+.+++.+..-+.
T Consensus 112 grhKIiILDEADSMT~-gAQQAlRRtMEiyS~ttRFalaCN~s 153 (333)
T KOG0991|consen 112 GRHKIIILDEADSMTA-GAQQALRRTMEIYSNTTRFALACNQS 153 (333)
T ss_pred CceeEEEeeccchhhh-HHHHHHHHHHHHHcccchhhhhhcch
Confidence 5788999999997743 34556666666655555555544443
No 329
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=95.80 E-value=0.14 Score=50.29 Aligned_cols=41 Identities=20% Similarity=0.384 Sum_probs=26.1
Q ss_pred CCCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEccc
Q 013858 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSAT 309 (435)
Q Consensus 267 l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT 309 (435)
..+++++||||+|+|... ....+.+.+..-++... +++.||
T Consensus 115 ~~~~kViiIDead~m~~~-aanaLLk~LEep~~~~~-fIL~a~ 155 (394)
T PRK07940 115 TGRWRIVVIEDADRLTER-AANALLKAVEEPPPRTV-WLLCAP 155 (394)
T ss_pred cCCcEEEEEechhhcCHH-HHHHHHHHhhcCCCCCe-EEEEEC
Confidence 357889999999988432 33456666665555554 444444
No 330
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.76 E-value=0.031 Score=57.29 Aligned_cols=49 Identities=14% Similarity=0.257 Sum_probs=29.0
Q ss_pred CCCceEEEEecCCcccCCC-CHHHHHHHHHhCCC-CCeEEEEcccccHHHH
Q 013858 267 LSRVSFVILDEADRMLDMG-FEPQIREVMQNLPD-KHQTLLFSATMPVEIE 315 (435)
Q Consensus 267 l~~~~~iIiDEah~~~~~~-~~~~i~~i~~~~~~-~~q~i~~SATl~~~~~ 315 (435)
+.++++|||||+|.+.... ....+..++..+.. +.++|+.|-..|..+.
T Consensus 375 y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~ 425 (617)
T PRK14086 375 YREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLV 425 (617)
T ss_pred hhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhh
Confidence 3457899999999775432 23444455554433 4566665555555543
No 331
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=95.75 E-value=0.034 Score=54.35 Aligned_cols=130 Identities=15% Similarity=0.053 Sum_probs=72.8
Q ss_pred cHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcC---
Q 013858 145 TSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL--- 221 (435)
Q Consensus 145 ~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~--- 221 (435)
...|..+.-..-.|.- .|.|=.|||||.. +.+-...+... ...-++++++-|+.|+.++...+.+|+-..
T Consensus 164 D~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~--La~Kaa~lh~k----nPd~~I~~Tfftk~L~s~~r~lv~~F~f~~~e~ 236 (660)
T COG3972 164 DTDQTKAAFQSGFGKQ-RIRGLAGSGKTEL--LAHKAAELHSK----NPDSRIAFTFFTKILASTMRTLVPEFFFMRVEK 236 (660)
T ss_pred cchhheeeeecCCchh-hhhcccCCCchhH--HHHHHHHHhcC----CCCceEEEEeehHHHHHHHHHHHHHHHHHHhhc
Confidence 4456666555555555 7788899999974 33322222222 124679999999999999999998887332
Q ss_pred -CCceEE---EEECCCCHHHHHHHHh---CCCcEEEECc----HHHHHHHHcCCCCCCCceEEEEecCCcc
Q 013858 222 -DSFKTA---IVVGGTNIAEQRSELR---GGVSIVVATP----GRFLDHLQQGNTSLSRVSFVILDEADRM 281 (435)
Q Consensus 222 -~~~~~~---~~~g~~~~~~~~~~~~---~~~~I~v~T~----~~l~~~l~~~~~~l~~~~~iIiDEah~~ 281 (435)
++.... .--||.+......... ....+-+.-- ..++..+.+...+..-+++|.|||++-.
T Consensus 237 ~pdW~~~l~~h~wgG~t~~g~y~~~~~~~~~~~~~fsg~g~~F~~aC~eli~~~~~~~~yD~ilIDE~QDF 307 (660)
T COG3972 237 QPDWGTKLFCHNWGGLTKEGFYGMYRYICHYYEIPFSGFGNGFDAACKELIADINNKKAYDYILIDESQDF 307 (660)
T ss_pred CCCccceEEEeccCCCCCCcchHHHHHHhcccccccCCCCcchHHHHHHHHHhhhccccccEEEecccccC
Confidence 222222 2224443322211111 1112222211 1223333333334677999999999854
No 332
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=95.74 E-value=0.022 Score=60.38 Aligned_cols=61 Identities=23% Similarity=0.326 Sum_probs=52.7
Q ss_pred CcEEEEeCchHHHHHHHHHHHhCC-----CcEEE-ecCCCCHHHHHHHHHHHHcCCCcEEEEcCCCC
Q 013858 375 PLTIVFVERKTRCDEVSEALVAEG-----LHAVA-LHGGRNQSDRESALRDFRNGSTNILVFSYKLL 435 (435)
Q Consensus 375 ~~~lVF~~~~~~~~~l~~~L~~~~-----~~v~~-lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L~ 435 (435)
.++++.++|..-+.++++.|.+.. ..+.. |||.|+..+++.++++|.+|..+|||+|+.+|
T Consensus 126 kr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL 192 (1187)
T COG1110 126 KRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFL 192 (1187)
T ss_pred CeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHH
Confidence 469999999999999999997652 44433 99999999999999999999999999998764
No 333
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.74 E-value=0.051 Score=55.49 Aligned_cols=40 Identities=15% Similarity=0.229 Sum_probs=27.0
Q ss_pred CCCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEc
Q 013858 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (435)
Q Consensus 267 l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~S 307 (435)
..+++++||||+|++... -...+.+.+...+....+|+.+
T Consensus 117 ~~~~kVvIIDEad~ls~~-a~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKS-AFNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred cCCceEEEEcCcccCCHH-HHHHHHHHHhCCCCCEEEEEEe
Confidence 457899999999987542 2345566666656667666655
No 334
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=95.73 E-value=0.043 Score=51.38 Aligned_cols=18 Identities=22% Similarity=0.231 Sum_probs=15.6
Q ss_pred CCCEEEEccCCCchhHHh
Q 013858 158 GRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~ 175 (435)
+.++++.||+|+|||+++
T Consensus 58 ~~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVA 75 (284)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 457999999999999865
No 335
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.71 E-value=0.077 Score=50.63 Aligned_cols=41 Identities=20% Similarity=0.381 Sum_probs=26.8
Q ss_pred CCCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEcc
Q 013858 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSA 308 (435)
Q Consensus 267 l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SA 308 (435)
...+.+|||||||.|.. +-...+.+.+..-+....+++.+-
T Consensus 107 ~~~~kviiidead~mt~-~A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 107 EGGYKVVIIDEADKLTE-DAANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred CCCceEEEeCcHHHHhH-HHHHHHHHHhccCCCCeEEEEEcC
Confidence 35789999999997743 334556666666566665555443
No 336
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=95.70 E-value=0.088 Score=50.45 Aligned_cols=136 Identities=17% Similarity=0.171 Sum_probs=69.6
Q ss_pred CcHHHHHHHHHHh----cCC---CEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHH
Q 013858 144 PTSIQAQAMPVAL----SGR---DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 216 (435)
Q Consensus 144 p~~~Q~~~i~~~~----~~~---~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~ 216 (435)
.+|||...|..+. .|+ -.++.||.|.||+..+ ..+-..+....+... + ..-.|+ .++.
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA-~~~A~~LlC~~~~~~--~--~Cg~C~----------sC~~ 67 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALI-YALSRWLMCQQPQGH--K--SCGHCR----------GCQL 67 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHH-HHHHHHHcCCCCCCC--C--CCCCCH----------HHHH
Confidence 4678888887765 444 3889999999999764 333344443221110 1 111122 2333
Q ss_pred Hh-hcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCCCHHHHHHHHH
Q 013858 217 LS-RSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQ 295 (435)
Q Consensus 217 ~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~~~~~i~~i~~ 295 (435)
+. ..+|++....-.++. ..|.|-..-.+.+.+.. .-....++++|||+||+|-.. -...+.+.+.
T Consensus 68 ~~~g~HPD~~~i~p~~~~------------~~I~idqiR~l~~~~~~-~~~~g~~kV~iI~~ae~m~~~-AaNaLLKtLE 133 (334)
T PRK07993 68 MQAGTHPDYYTLTPEKGK------------SSLGVDAVREVTEKLYE-HARLGGAKVVWLPDAALLTDA-AANALLKTLE 133 (334)
T ss_pred HHcCCCCCEEEEeccccc------------ccCCHHHHHHHHHHHhh-ccccCCceEEEEcchHhhCHH-HHHHHHHHhc
Confidence 32 233455433211110 11222222223333332 223457899999999987432 3556666666
Q ss_pred hCCCCCeEEEEcc
Q 013858 296 NLPDKHQTLLFSA 308 (435)
Q Consensus 296 ~~~~~~q~i~~SA 308 (435)
.-|+..-+|+.|.
T Consensus 134 EPp~~t~fiL~t~ 146 (334)
T PRK07993 134 EPPENTWFFLACR 146 (334)
T ss_pred CCCCCeEEEEEEC
Confidence 6555555555554
No 337
>PRK05580 primosome assembly protein PriA; Validated
Probab=95.69 E-value=0.065 Score=56.59 Aligned_cols=58 Identities=17% Similarity=0.292 Sum_probs=53.9
Q ss_pred CcEEEEeCchHHHHHHHHHHHhC-CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcC
Q 013858 375 PLTIVFVERKTRCDEVSEALVAE-GLHAVALHGGRNQSDRESALRDFRNGSTNILVFSY 432 (435)
Q Consensus 375 ~~~lVF~~~~~~~~~l~~~L~~~-~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~ 432 (435)
.++||.++++.-+.++.+.|++. |..+..+||+++..+|......+..|+.+|+|+|.
T Consensus 191 ~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTr 249 (679)
T PRK05580 191 KQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGAR 249 (679)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEecc
Confidence 46999999999999999999874 78899999999999999999999999999999996
No 338
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.69 E-value=0.12 Score=49.27 Aligned_cols=41 Identities=17% Similarity=0.312 Sum_probs=28.2
Q ss_pred CCCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEcc
Q 013858 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSA 308 (435)
Q Consensus 267 l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SA 308 (435)
....+++|+|++|.+ +......+.+.+...+....+|+.|-
T Consensus 111 ~~~~kV~iiEp~~~L-d~~a~naLLk~LEep~~~~~~Ilvth 151 (325)
T PRK08699 111 RGGLRVILIHPAESM-NLQAANSLLKVLEEPPPQVVFLLVSH 151 (325)
T ss_pred cCCceEEEEechhhC-CHHHHHHHHHHHHhCcCCCEEEEEeC
Confidence 457899999999976 33456677777777665555555443
No 339
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.69 E-value=0.11 Score=41.98 Aligned_cols=14 Identities=36% Similarity=0.501 Sum_probs=12.6
Q ss_pred EEEEccCCCchhHH
Q 013858 161 LLGCAETGSGKTAA 174 (435)
Q Consensus 161 vii~~~TGsGKT~~ 174 (435)
+++.||.|+|||+.
T Consensus 1 ill~G~~G~GKT~l 14 (132)
T PF00004_consen 1 ILLHGPPGTGKTTL 14 (132)
T ss_dssp EEEESSTTSSHHHH
T ss_pred CEEECcCCCCeeHH
Confidence 68999999999984
No 340
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=95.68 E-value=0.092 Score=50.95 Aligned_cols=26 Identities=42% Similarity=0.567 Sum_probs=18.7
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHH
Q 013858 158 GRDLLGCAETGSGKTAAFTIPMIQHCV 184 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~~~~~l~~~~ 184 (435)
+..++++||||||||+.. -.++.++.
T Consensus 149 ~GlilI~G~TGSGKTT~l-~al~~~i~ 174 (372)
T TIGR02525 149 AGLGLICGETGSGKSTLA-ASIYQHCG 174 (372)
T ss_pred CCEEEEECCCCCCHHHHH-HHHHHHHH
Confidence 346899999999999842 44555544
No 341
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.67 E-value=0.059 Score=53.86 Aligned_cols=54 Identities=24% Similarity=0.303 Sum_probs=34.7
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhh
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSR 219 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~ 219 (435)
.|.-+++.|++|+|||+.. +-+...... .+.+++|+.-- +-..|+..+++.++.
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~-lq~a~~~a~-------~g~~vlYvs~E-es~~qi~~ra~rlg~ 132 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLL-LQVAARLAA-------AGGKVLYVSGE-ESASQIKLRAERLGL 132 (446)
T ss_pred CCEEEEEECCCCCCHHHHH-HHHHHHHHh-------cCCeEEEEEcc-ccHHHHHHHHHHcCC
Confidence 3556899999999999743 333233222 14568888743 556677777776653
No 342
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=95.65 E-value=0.14 Score=48.65 Aligned_cols=135 Identities=13% Similarity=0.102 Sum_probs=67.9
Q ss_pred CcHHHHHHHHHHh----cCC---CEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHH
Q 013858 144 PTSIQAQAMPVAL----SGR---DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 216 (435)
Q Consensus 144 p~~~Q~~~i~~~~----~~~---~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~ 216 (435)
++|||...+..+. .|+ -.+++||.|.||+..+ ..+...+....... ++ |.. ...++.
T Consensus 4 ~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA-~~~a~~llC~~~~~---~~-----Cg~-------C~sC~~ 67 (319)
T PRK06090 4 DYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLV-ELFSRALLCQNYQS---EA-----CGF-------CHSCEL 67 (319)
T ss_pred CcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHH-HHHHHHHcCCCCCC---CC-----CCC-------CHHHHH
Confidence 5677777776655 444 4899999999999754 33334444322111 11 111 112322
Q ss_pred Hh-hcCCCceEEEEEC-CCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCCCHHHHHHHH
Q 013858 217 LS-RSLDSFKTAIVVG-GTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVM 294 (435)
Q Consensus 217 ~~-~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~~~~~i~~i~ 294 (435)
+. ..++++....-.+ |. .|.|-....+.+.+.. ......++++|||+||+|.. .-...+.+.+
T Consensus 68 ~~~g~HPD~~~i~p~~~~~-------------~I~vdqiR~l~~~~~~-~~~~~~~kV~iI~~ae~m~~-~AaNaLLKtL 132 (319)
T PRK06090 68 MQSGNHPDLHVIKPEKEGK-------------SITVEQIRQCNRLAQE-SSQLNGYRLFVIEPADAMNE-SASNALLKTL 132 (319)
T ss_pred HHcCCCCCEEEEecCcCCC-------------cCCHHHHHHHHHHHhh-CcccCCceEEEecchhhhCH-HHHHHHHHHh
Confidence 22 2234444332111 11 1211111122222222 22345789999999998742 2355666777
Q ss_pred HhCCCCCeEEEEccc
Q 013858 295 QNLPDKHQTLLFSAT 309 (435)
Q Consensus 295 ~~~~~~~q~i~~SAT 309 (435)
..-|++.-+|+.|..
T Consensus 133 EEPp~~t~fiL~t~~ 147 (319)
T PRK06090 133 EEPAPNCLFLLVTHN 147 (319)
T ss_pred cCCCCCeEEEEEECC
Confidence 665666655555543
No 343
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=95.65 E-value=0.084 Score=54.09 Aligned_cols=133 Identities=20% Similarity=0.219 Sum_probs=79.6
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcC-CCceEEEEECCCCH
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL-DSFKTAIVVGGTNI 235 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~-~~~~~~~~~g~~~~ 235 (435)
+.+-.++..|=-.|||+... +++..++.. -.|.++++++|.+..+..+++++..+.+.. +.-.+..+.| ...
T Consensus 253 kqk~tVflVPRR~GKTwivv-~iI~~ll~s-----~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e~I 325 (738)
T PHA03368 253 RQRATVFLVPRRHGKTWFLV-PLIALALAT-----FRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-ETI 325 (738)
T ss_pred hccceEEEecccCCchhhHH-HHHHHHHHh-----CCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-cEE
Confidence 34568888899999998754 666655532 126789999999999999999987765432 1111222222 110
Q ss_pred HHHHHHHhCC--CcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCCCHHHHHHHHHhC-CCCCeEEEEccc
Q 013858 236 AEQRSELRGG--VSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSAT 309 (435)
Q Consensus 236 ~~~~~~~~~~--~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~-~~~~q~i~~SAT 309 (435)
.....++ ..|.+++. ...+...=..++++|||||+-+.. ..+..++-.+ ..+.|+|.+|.|
T Consensus 326 ---~i~f~nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk~----~al~~ilp~l~~~n~k~I~ISS~ 389 (738)
T PHA03368 326 ---SFSFPDGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIRP----DAVQTIMGFLNQTNCKIIFVSST 389 (738)
T ss_pred ---EEEecCCCccEEEEEec------cCCCCccCCcccEEEEechhhCCH----HHHHHHHHHHhccCccEEEEecC
Confidence 0011222 25666642 111112234689999999996643 3444444332 236788999877
No 344
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.64 E-value=0.057 Score=53.24 Aligned_cols=42 Identities=17% Similarity=0.243 Sum_probs=24.0
Q ss_pred CCCCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEccc
Q 013858 266 SLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSAT 309 (435)
Q Consensus 266 ~l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT 309 (435)
.....+++||||+|++.... ...+.+.+...++... +++.++
T Consensus 124 ~~~~~kvvIIdea~~l~~~~-~~~LLk~LEep~~~t~-~Il~t~ 165 (397)
T PRK14955 124 QKGRYRVYIIDEVHMLSIAA-FNAFLKTLEEPPPHAI-FIFATT 165 (397)
T ss_pred hcCCeEEEEEeChhhCCHHH-HHHHHHHHhcCCCCeE-EEEEeC
Confidence 35678999999999875321 2234444444444443 444444
No 345
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.63 E-value=0.062 Score=55.31 Aligned_cols=17 Identities=29% Similarity=0.276 Sum_probs=14.6
Q ss_pred CEEEEccCCCchhHHhH
Q 013858 160 DLLGCAETGSGKTAAFT 176 (435)
Q Consensus 160 ~vii~~~TGsGKT~~~~ 176 (435)
.+|+.||.|+|||+++.
T Consensus 40 a~Lf~GPpG~GKTtiAr 56 (624)
T PRK14959 40 AYLFSGTRGVGKTTIAR 56 (624)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 48899999999998653
No 346
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=95.62 E-value=0.06 Score=55.41 Aligned_cols=42 Identities=12% Similarity=0.166 Sum_probs=24.7
Q ss_pred CCCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEcccc
Q 013858 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATM 310 (435)
Q Consensus 267 l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SATl 310 (435)
..+++++||||+|++... -...+.+.+...+.... +++.+|-
T Consensus 117 ~~~~kViIIDE~~~Lt~~-a~naLLKtLEepp~~~i-fIlatt~ 158 (559)
T PRK05563 117 EAKYKVYIIDEVHMLSTG-AFNALLKTLEEPPAHVI-FILATTE 158 (559)
T ss_pred cCCeEEEEEECcccCCHH-HHHHHHHHhcCCCCCeE-EEEEeCC
Confidence 457899999999987432 23344444554444443 3444453
No 347
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.60 E-value=0.03 Score=56.19 Aligned_cols=54 Identities=20% Similarity=0.345 Sum_probs=35.5
Q ss_pred CCCCcccCCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHh
Q 013858 119 PIESFTDMCLHPSIMKDIEFH---EYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 119 ~~~~~~~~~l~~~l~~~l~~~---~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~ 175 (435)
|--+|+++|=-..+...|... .+++|--++.-.+.. -..|++|||.|+|||+.+
T Consensus 506 PdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~---PsGvLL~GPPGCGKTLlA 562 (802)
T KOG0733|consen 506 PDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDA---PSGVLLCGPPGCGKTLLA 562 (802)
T ss_pred CCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCC---CCceEEeCCCCccHHHHH
Confidence 445799998777776665442 344444444443332 456999999999999843
No 348
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.60 E-value=0.035 Score=57.30 Aligned_cols=40 Identities=13% Similarity=0.252 Sum_probs=25.3
Q ss_pred CCCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEc
Q 013858 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (435)
Q Consensus 267 l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~S 307 (435)
..+++++||||+|+|.... ...+.+.+...+..+.+|+.+
T Consensus 122 ~g~~KV~IIDEvh~Ls~~a-~NaLLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 122 QGRFKVFMIDEVHMLTNTA-FNAMLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred cCCceEEEEEChhhCCHHH-HHHHHHhcccCCCCeEEEEEE
Confidence 3578999999999875432 234455555545556555544
No 349
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.57 E-value=0.056 Score=50.97 Aligned_cols=65 Identities=23% Similarity=0.273 Sum_probs=38.8
Q ss_pred HHHHHCCCCCCcHHHHHHHHHHh-cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhh
Q 013858 134 KDIEFHEYTRPTSIQAQAMPVAL-SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL 206 (435)
Q Consensus 134 ~~l~~~~~~~p~~~Q~~~i~~~~-~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~l 206 (435)
..+...|. .++.|...+..+. .+.+++++|+||||||+.. -.++.++... +...+++++-...|+
T Consensus 109 ~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~al~~~i~~~-----~~~~ri~tiEd~~El 174 (299)
T TIGR02782 109 DDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTLA-NALLAEIAKN-----DPTDRVVIIEDTREL 174 (299)
T ss_pred HHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHhhcc-----CCCceEEEECCchhh
Confidence 44444443 3445555565544 5668999999999999842 3333333221 113467777777776
No 350
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=95.56 E-value=0.1 Score=50.81 Aligned_cols=24 Identities=25% Similarity=0.348 Sum_probs=17.7
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHH
Q 013858 159 RDLLGCAETGSGKTAAFTIPMIQHC 183 (435)
Q Consensus 159 ~~vii~~~TGsGKT~~~~~~~l~~~ 183 (435)
.+++|.||+|+|||.+. -.++..+
T Consensus 41 ~~i~I~G~~GtGKT~l~-~~~~~~l 64 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT-KYVMKEL 64 (365)
T ss_pred CcEEEECCCCCCHHHHH-HHHHHHH
Confidence 57999999999999754 3344443
No 351
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.55 E-value=0.19 Score=48.09 Aligned_cols=44 Identities=18% Similarity=0.267 Sum_probs=28.0
Q ss_pred HhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhH
Q 013858 155 ALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELA 207 (435)
Q Consensus 155 ~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la 207 (435)
+..+.+++++|+||||||+. +-.++.++ . ...+++.+=.+.|+.
T Consensus 157 v~~~~nili~G~tgSGKTTl-l~aL~~~i-p-------~~~ri~tiEd~~El~ 200 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTTF-TNAALREI-P-------AIERLITVEDAREIV 200 (332)
T ss_pred HHcCCcEEEECCCCCCHHHH-HHHHHhhC-C-------CCCeEEEecCCCccc
Confidence 33678999999999999973 23333332 1 134566665666663
No 352
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.53 E-value=0.023 Score=54.52 Aligned_cols=45 Identities=24% Similarity=0.338 Sum_probs=29.5
Q ss_pred HHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhH
Q 013858 154 VALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELA 207 (435)
Q Consensus 154 ~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la 207 (435)
++..+.+++++|+||||||+. +-++..... ...+++.+-.+.++.
T Consensus 158 ~v~~~~nilI~G~tGSGKTTl--l~aLl~~i~-------~~~rivtiEd~~El~ 202 (344)
T PRK13851 158 CVVGRLTMLLCGPTGSGKTTM--SKTLISAIP-------PQERLITIEDTLELV 202 (344)
T ss_pred HHHcCCeEEEECCCCccHHHH--HHHHHcccC-------CCCCEEEECCCcccc
Confidence 344678999999999999983 333332221 134577777777763
No 353
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=95.50 E-value=0.22 Score=48.22 Aligned_cols=110 Identities=15% Similarity=0.189 Sum_probs=61.8
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHH
Q 013858 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAE 237 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 237 (435)
.+.+-+.|+.|.|||+ ++-++-..... ..+.++ +.-+...++.+.+.++. |+.
T Consensus 62 ~~GlYl~G~vG~GKT~--Lmd~f~~~lp~-----~~k~R~----HFh~Fm~~vh~~l~~~~------------~~~---- 114 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTM--LMDLFYDSLPI-----KRKRRV----HFHEFMLDVHSRLHQLR------------GQD---- 114 (362)
T ss_pred CceEEEECCCCCchhH--HHHHHHHhCCc-----cccccc----cccHHHHHHHHHHHHHh------------CCC----
Confidence 4569999999999998 44444332221 011111 33456666666666653 111
Q ss_pred HHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCCCHHHHHHHHHhC-CCCCeEEEEcccccHHH
Q 013858 238 QRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMPVEI 314 (435)
Q Consensus 238 ~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~-~~~~q~i~~SATl~~~~ 314 (435)
+- ...+.+.+ ..+..+|.|||.| +.|.+-...+..++..+ ....-+|+.|-+.|.++
T Consensus 115 ---------~~----l~~va~~l------~~~~~lLcfDEF~-V~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~L 172 (362)
T PF03969_consen 115 ---------DP----LPQVADEL------AKESRLLCFDEFQ-VTDIADAMILKRLFEALFKRGVVLVATSNRPPEDL 172 (362)
T ss_pred ---------cc----HHHHHHHH------HhcCCEEEEeeee-ccchhHHHHHHHHHHHHHHCCCEEEecCCCChHHH
Confidence 00 01112222 3356799999999 33554444555555544 44667888888887765
No 354
>PF05729 NACHT: NACHT domain
Probab=95.49 E-value=0.15 Score=42.98 Aligned_cols=16 Identities=38% Similarity=0.453 Sum_probs=13.7
Q ss_pred CEEEEccCCCchhHHh
Q 013858 160 DLLGCAETGSGKTAAF 175 (435)
Q Consensus 160 ~vii~~~TGsGKT~~~ 175 (435)
-++|.|+.|+|||+..
T Consensus 2 ~l~I~G~~G~GKStll 17 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLL 17 (166)
T ss_pred EEEEECCCCCChHHHH
Confidence 4789999999999843
No 355
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.48 E-value=0.075 Score=51.68 Aligned_cols=91 Identities=18% Similarity=0.304 Sum_probs=51.6
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHH
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIA 236 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~ 236 (435)
.|.-+++.|++|+|||+.. +-+...+... +.+++|+.-- +-..|+..++.+++.....+ .++..
T Consensus 81 ~GslvLI~G~pG~GKStLl-lq~a~~~a~~-------g~~VlYvs~E-Es~~qi~~Ra~rlg~~~~~l---~l~~e---- 144 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLL-LQVAARLAKR-------GGKVLYVSGE-ESPEQIKLRADRLGISTENL---YLLAE---- 144 (372)
T ss_pred CCeEEEEEeCCCCCHHHHH-HHHHHHHHhc-------CCeEEEEECC-cCHHHHHHHHHHcCCCcccE---EEEcc----
Confidence 3566999999999999743 3233333221 3568887654 44567766666664322111 11111
Q ss_pred HHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCccc
Q 013858 237 EQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRML 282 (435)
Q Consensus 237 ~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~ 282 (435)
+..+.+.+.+.. .+.++||||+++.+.
T Consensus 145 --------------~~le~I~~~i~~-----~~~~lVVIDSIq~l~ 171 (372)
T cd01121 145 --------------TNLEDILASIEE-----LKPDLVIIDSIQTVY 171 (372)
T ss_pred --------------CcHHHHHHHHHh-----cCCcEEEEcchHHhh
Confidence 122334444432 357899999998664
No 356
>PRK10436 hypothetical protein; Provisional
Probab=95.46 E-value=0.067 Score=53.47 Aligned_cols=38 Identities=32% Similarity=0.309 Sum_probs=26.2
Q ss_pred cHHHHHHHHHHhcC--CCEEEEccCCCchhHHhHHHHHHHH
Q 013858 145 TSIQAQAMPVALSG--RDLLGCAETGSGKTAAFTIPMIQHC 183 (435)
Q Consensus 145 ~~~Q~~~i~~~~~~--~~vii~~~TGsGKT~~~~~~~l~~~ 183 (435)
.+.|.+.+..++.. --++++||||||||+.. ..++..+
T Consensus 203 ~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL-~a~l~~~ 242 (462)
T PRK10436 203 TPAQLAQFRQALQQPQGLILVTGPTGSGKTVTL-YSALQTL 242 (462)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCChHHHH-HHHHHhh
Confidence 45566666666543 34999999999999853 4555554
No 357
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=95.45 E-value=0.067 Score=56.60 Aligned_cols=62 Identities=16% Similarity=0.236 Sum_probs=55.2
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCCC
Q 013858 374 FPLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYKLL 435 (435)
Q Consensus 374 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L~ 435 (435)
+.+++|.++++.-|.+.++.+++. |+.+..+||+++..+|..+++.+.+|+..|+|+|..++
T Consensus 310 g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll 375 (681)
T PRK10917 310 GYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALI 375 (681)
T ss_pred CCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHh
Confidence 346999999999999988887654 68999999999999999999999999999999997653
No 358
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=95.40 E-value=0.12 Score=54.68 Aligned_cols=16 Identities=31% Similarity=0.366 Sum_probs=14.4
Q ss_pred CEEEEccCCCchhHHh
Q 013858 160 DLLGCAETGSGKTAAF 175 (435)
Q Consensus 160 ~vii~~~TGsGKT~~~ 175 (435)
++++.||+|+|||+.+
T Consensus 54 slLL~GPpGtGKTTLA 69 (725)
T PRK13341 54 SLILYGPPGVGKTTLA 69 (725)
T ss_pred eEEEECCCCCCHHHHH
Confidence 6999999999999854
No 359
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.40 E-value=0.41 Score=44.98 Aligned_cols=131 Identities=18% Similarity=0.222 Sum_probs=74.9
Q ss_pred CEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEc--cChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHH
Q 013858 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA--PTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAE 237 (435)
Q Consensus 160 ~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~--P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 237 (435)
.++++|-.|+|||+.. .=+.+.+.. .|.++++.+ -.|+.|..+.+.|.+-. ++.+..-..|..
T Consensus 141 Vil~vGVNG~GKTTTI--aKLA~~l~~------~g~~VllaA~DTFRAaAiEQL~~w~er~----gv~vI~~~~G~D--- 205 (340)
T COG0552 141 VILFVGVNGVGKTTTI--AKLAKYLKQ------QGKSVLLAAGDTFRAAAIEQLEVWGERL----GVPVISGKEGAD--- 205 (340)
T ss_pred EEEEEecCCCchHhHH--HHHHHHHHH------CCCeEEEEecchHHHHHHHHHHHHHHHh----CCeEEccCCCCC---
Confidence 3889999999999963 333333332 156676666 45676666655553321 233332111221
Q ss_pred HHHHHhCCCcEEEECcH-HHHHHHHcCCCCCCCceEEEEecCCcccCCC-CHHHHHHHHHhCCCCC------eEEEEccc
Q 013858 238 QRSELRGGVSIVVATPG-RFLDHLQQGNTSLSRVSFVILDEADRMLDMG-FEPQIREVMQNLPDKH------QTLLFSAT 309 (435)
Q Consensus 238 ~~~~~~~~~~I~v~T~~-~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~-~~~~i~~i~~~~~~~~------q~i~~SAT 309 (435)
|. ...+.+.+. .-+++++|++|=|=|+-+.. ....+.+|.+-+.+.. -++.+=||
T Consensus 206 ---------------pAaVafDAi~~A--kar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAt 268 (340)
T COG0552 206 ---------------PAAVAFDAIQAA--KARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDAT 268 (340)
T ss_pred ---------------cHHHHHHHHHHH--HHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcc
Confidence 11 122333321 24578899999999887643 4556666666655433 34455899
Q ss_pred ccHHHHHHHHHHc
Q 013858 310 MPVEIEALAQEYL 322 (435)
Q Consensus 310 l~~~~~~~~~~~~ 322 (435)
...+.-.-++.|-
T Consensus 269 tGqnal~QAk~F~ 281 (340)
T COG0552 269 TGQNALSQAKIFN 281 (340)
T ss_pred cChhHHHHHHHHH
Confidence 8777666666663
No 360
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.36 E-value=0.037 Score=47.95 Aligned_cols=46 Identities=20% Similarity=0.380 Sum_probs=26.3
Q ss_pred HhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHH
Q 013858 155 ALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQ 209 (435)
Q Consensus 155 ~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q 209 (435)
+..++++++.|++|+|||..+ ..+...+... |..++++ ....|...
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa-~ai~~~~~~~-------g~~v~f~-~~~~L~~~ 89 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLA-VAIANEAIRK-------GYSVLFI-TASDLLDE 89 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHH-HHHHHHHHHT-------T--EEEE-EHHHHHHH
T ss_pred cccCeEEEEEhhHhHHHHHHH-HHHHHHhccC-------CcceeEe-ecCceecc
Confidence 346788999999999999864 4444444442 3445554 33355443
No 361
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.33 E-value=0.16 Score=48.08 Aligned_cols=18 Identities=22% Similarity=0.281 Sum_probs=15.4
Q ss_pred CCCEEEEccCCCchhHHh
Q 013858 158 GRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~ 175 (435)
++.+++.|++|+|||..+
T Consensus 156 ~~gl~L~G~~G~GKThLa 173 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLL 173 (306)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 457999999999999853
No 362
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=95.33 E-value=0.046 Score=49.16 Aligned_cols=56 Identities=14% Similarity=0.380 Sum_probs=30.2
Q ss_pred ECcHHHHHHHHcCCCCCCCceEEEEecCCccc-CC----CCHHHHHHHHHhCCC-CCeEEEEcccc
Q 013858 251 ATPGRFLDHLQQGNTSLSRVSFVILDEADRML-DM----GFEPQIREVMQNLPD-KHQTLLFSATM 310 (435)
Q Consensus 251 ~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~-~~----~~~~~i~~i~~~~~~-~~q~i~~SATl 310 (435)
.+...+++.+...... -+|||||+|.+. .. .+...+..++..... ....++++++-
T Consensus 104 ~~l~~~~~~l~~~~~~----~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~ 165 (234)
T PF01637_consen 104 SALERLLEKLKKKGKK----VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSS 165 (234)
T ss_dssp --HHHHHHHHHHCHCC----EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESS
T ss_pred HHHHHHHHHHHhcCCc----EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCc
Confidence 3445566666543221 799999999887 22 245566666666322 22344555554
No 363
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.32 E-value=0.13 Score=48.69 Aligned_cols=18 Identities=28% Similarity=0.333 Sum_probs=15.3
Q ss_pred CCCEEEEccCCCchhHHh
Q 013858 158 GRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~ 175 (435)
-+.|++-||.|+|||+.+
T Consensus 185 PKGVLLYGPPGTGKTLLA 202 (406)
T COG1222 185 PKGVLLYGPPGTGKTLLA 202 (406)
T ss_pred CCceEeeCCCCCcHHHHH
Confidence 367999999999999843
No 364
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=95.31 E-value=0.056 Score=55.60 Aligned_cols=124 Identities=18% Similarity=0.240 Sum_probs=77.8
Q ss_pred CCcHHHHHHHHHHhcC--CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHH-HHHHHHhh
Q 013858 143 RPTSIQAQAMPVALSG--RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIE-KEVKALSR 219 (435)
Q Consensus 143 ~p~~~Q~~~i~~~~~~--~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~-~~~~~~~~ 219 (435)
..+|||.+.+.++-.. +.|+++.++-+|||.+. +-++-+..... ..-+|++.||..+|..+. .++..+.+
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~-~n~~g~~i~~~------P~~~l~v~Pt~~~a~~~~~~rl~Pmi~ 88 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELL-LNWIGYSIDQD------PGPMLYVQPTDDAAKDFSKERLDPMIR 88 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHH-HhhceEEEEeC------CCCEEEEEEcHHHHHHHHHHHHHHHHH
Confidence 4589999999888755 46999999999999854 44444444432 245999999999988875 77788877
Q ss_pred cCCCceEEEEE-----CCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCccc
Q 013858 220 SLDSFKTAIVV-----GGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRML 282 (435)
Q Consensus 220 ~~~~~~~~~~~-----g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~ 282 (435)
..+.++-.+.- ++.+... ..+ .+..+.++..+.- ..+.-..++++++||+++.-
T Consensus 89 ~sp~l~~~~~~~~~~~~~~t~~~--k~f-~gg~l~~~ga~S~------~~l~s~~~r~~~~DEvD~~p 147 (557)
T PF05876_consen 89 ASPVLRRKLSPSKSRDSGNTILY--KRF-PGGFLYLVGANSP------SNLRSRPARYLLLDEVDRYP 147 (557)
T ss_pred hCHHHHHHhCchhhcccCCchhh--eec-CCCEEEEEeCCCC------cccccCCcCEEEEechhhcc
Confidence 76655432222 1111110 111 2344555443211 12334468999999999763
No 365
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.29 E-value=0.17 Score=45.74 Aligned_cols=53 Identities=17% Similarity=0.181 Sum_probs=31.3
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHh
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~ 218 (435)
.|..+++.|++|+|||+.+.-.+... ... +..++++.- .+.+.++.+.++.++
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~-~~~-------g~~~~~is~-e~~~~~i~~~~~~~g 71 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKG-LRD-------GDPVIYVTT-EESRESIIRQAAQFG 71 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHH-Hhc-------CCeEEEEEc-cCCHHHHHHHHHHhC
Confidence 46779999999999997543222222 221 345677663 334455555555544
No 366
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.23 E-value=0.11 Score=52.32 Aligned_cols=15 Identities=27% Similarity=0.372 Sum_probs=13.6
Q ss_pred EEEEccCCCchhHHh
Q 013858 161 LLGCAETGSGKTAAF 175 (435)
Q Consensus 161 vii~~~TGsGKT~~~ 175 (435)
++++||.|+|||+.+
T Consensus 39 ~Lf~GPpGtGKTTlA 53 (472)
T PRK14962 39 YIFAGPRGTGKTTVA 53 (472)
T ss_pred EEEECCCCCCHHHHH
Confidence 799999999999865
No 367
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=95.22 E-value=0.063 Score=52.24 Aligned_cols=48 Identities=15% Similarity=0.270 Sum_probs=32.7
Q ss_pred CceEEEEecCCcccCC-CCHHHHHHHHHhCCC-CCeEEEEcccccHHHHH
Q 013858 269 RVSFVILDEADRMLDM-GFEPQIREVMQNLPD-KHQTLLFSATMPVEIEA 316 (435)
Q Consensus 269 ~~~~iIiDEah~~~~~-~~~~~i~~i~~~~~~-~~q~i~~SATl~~~~~~ 316 (435)
.+++++||+++.+... .....+-.+...+.. ..|+|+.|..+|.++..
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~ 224 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNG 224 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhcc
Confidence 7899999999976554 244455555555543 44788888777777653
No 368
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.21 E-value=0.14 Score=47.67 Aligned_cols=51 Identities=20% Similarity=0.195 Sum_probs=29.5
Q ss_pred hcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHH
Q 013858 156 LSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEV 214 (435)
Q Consensus 156 ~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~ 214 (435)
..|..+++.|++|+|||+.. ..+...+... .+..++++.-- .-..++.+++
T Consensus 28 ~~g~~~~i~g~~G~GKT~l~-~~~~~~~~~~------~g~~vl~iS~E-~~~~~~~~r~ 78 (271)
T cd01122 28 RKGELIILTAGTGVGKTTFL-REYALDLITQ------HGVRVGTISLE-EPVVRTARRL 78 (271)
T ss_pred cCCcEEEEEcCCCCCHHHHH-HHHHHHHHHh------cCceEEEEEcc-cCHHHHHHHH
Confidence 36678999999999999743 3333332221 14567777632 2334444444
No 369
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=95.20 E-value=0.058 Score=55.26 Aligned_cols=39 Identities=13% Similarity=0.152 Sum_probs=24.2
Q ss_pred CCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEc
Q 013858 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (435)
Q Consensus 268 ~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~S 307 (435)
.+.+++||||||++... -...+.+.+...++..-+|+++
T Consensus 118 ~~~KVIIIDEad~Lt~~-A~NaLLKtLEEPp~~tvfIL~T 156 (605)
T PRK05896 118 FKYKVYIIDEAHMLSTS-AWNALLKTLEEPPKHVVFIFAT 156 (605)
T ss_pred CCcEEEEEechHhCCHH-HHHHHHHHHHhCCCcEEEEEEC
Confidence 46789999999977422 2345555555555555444444
No 370
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=95.15 E-value=0.081 Score=54.61 Aligned_cols=44 Identities=23% Similarity=0.231 Sum_probs=29.9
Q ss_pred HHHCCCCCCcHHHHHHHHHHhcC-C-CEEEEccCCCchhHHhHHHHHHHH
Q 013858 136 IEFHEYTRPTSIQAQAMPVALSG-R-DLLGCAETGSGKTAAFTIPMIQHC 183 (435)
Q Consensus 136 l~~~~~~~p~~~Q~~~i~~~~~~-~-~vii~~~TGsGKT~~~~~~~l~~~ 183 (435)
|...|+ .+-|.+.+..++.. + .++++||||||||+.. ..++.++
T Consensus 295 l~~lg~---~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl-~a~l~~~ 340 (564)
T TIGR02538 295 IDKLGF---EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL-YTALNIL 340 (564)
T ss_pred HHHcCC---CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHhh
Confidence 455554 45677777766643 3 4889999999999863 4555554
No 371
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=95.00 E-value=0.56 Score=44.59 Aligned_cols=38 Identities=21% Similarity=0.343 Sum_probs=24.8
Q ss_pred CceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEc
Q 013858 269 RVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (435)
Q Consensus 269 ~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~S 307 (435)
..++|||||+|.+... ....+..++...++...+|+.+
T Consensus 102 ~~~vviiDe~~~l~~~-~~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 102 PFKIIFLDEADNLTSD-AQQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CceEEEEeCcccCCHH-HHHHHHHHHhcCCCCCeEEEEe
Confidence 4679999999977432 2345566666666667666554
No 372
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.99 E-value=0.18 Score=46.69 Aligned_cols=38 Identities=21% Similarity=0.217 Sum_probs=24.9
Q ss_pred cHHHHHHHHHHhc-C-CCEEEEccCCCchhHHhHHHHHHHH
Q 013858 145 TSIQAQAMPVALS-G-RDLLGCAETGSGKTAAFTIPMIQHC 183 (435)
Q Consensus 145 ~~~Q~~~i~~~~~-~-~~vii~~~TGsGKT~~~~~~~l~~~ 183 (435)
.+.|.+.+..++. . ..++++|+||||||+.. ..++..+
T Consensus 65 ~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l-~all~~i 104 (264)
T cd01129 65 KPENLEIFRKLLEKPHGIILVTGPTGSGKTTTL-YSALSEL 104 (264)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHH-HHHHhhh
Confidence 4456666665553 3 35899999999999843 3444443
No 373
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=94.99 E-value=0.35 Score=51.37 Aligned_cols=73 Identities=15% Similarity=0.251 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhC-CCcEEEecCCCCHHHHHHHHHHHH----cCCC
Q 013858 351 EKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE-GLHAVALHGGRNQSDRESALRDFR----NGST 425 (435)
Q Consensus 351 ~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~-~~~v~~lh~~~~~~~R~~~~~~f~----~g~~ 425 (435)
.....+.+.+.+... .++++|||+++....++++..|... +.. ...+|.. .|..+++.|+ .|+.
T Consensus 518 ~~~~~~~~~i~~l~~-------~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~~---~~~~ll~~f~~~~~~~~~ 586 (697)
T PRK11747 518 AHTAEMAEFLPELLE-------KHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGDQ---PRQRLLEKHKKRVDEGEG 586 (697)
T ss_pred HHHHHHHHHHHHHHh-------cCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCCc---hHHHHHHHHHHHhccCCC
Confidence 344555555555442 2345899999999999999999753 333 3445542 5677887776 4678
Q ss_pred cEEEEcCCC
Q 013858 426 NILVFSYKL 434 (435)
Q Consensus 426 ~VLVaT~~L 434 (435)
.||++|..+
T Consensus 587 ~VL~g~~sf 595 (697)
T PRK11747 587 SVLFGLQSF 595 (697)
T ss_pred eEEEEeccc
Confidence 899998654
No 374
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=94.95 E-value=0.11 Score=52.58 Aligned_cols=44 Identities=18% Similarity=0.216 Sum_probs=28.9
Q ss_pred HHHCCCCCCcHHHHHHHHHHhcC-CC-EEEEccCCCchhHHhHHHHHHHH
Q 013858 136 IEFHEYTRPTSIQAQAMPVALSG-RD-LLGCAETGSGKTAAFTIPMIQHC 183 (435)
Q Consensus 136 l~~~~~~~p~~~Q~~~i~~~~~~-~~-vii~~~TGsGKT~~~~~~~l~~~ 183 (435)
|...|+ .+-|.+.+..++.. +. ++++||||||||+.. ..++..+
T Consensus 221 l~~Lg~---~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL-~a~L~~l 266 (486)
T TIGR02533 221 LETLGM---SPELLSRFERLIRRPHGIILVTGPTGSGKTTTL-YAALSRL 266 (486)
T ss_pred HHHcCC---CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH-HHHHhcc
Confidence 444554 55677777776654 33 789999999999853 3344443
No 375
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=94.92 E-value=0.32 Score=47.19 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=17.9
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHH
Q 013858 159 RDLLGCAETGSGKTAAFTIPMIQHCV 184 (435)
Q Consensus 159 ~~vii~~~TGsGKT~~~~~~~l~~~~ 184 (435)
.++++-|+||+|||.+. --++..+.
T Consensus 43 ~n~~iyG~~GTGKT~~~-~~v~~~l~ 67 (366)
T COG1474 43 SNIIIYGPTGTGKTATV-KFVMEELE 67 (366)
T ss_pred ccEEEECCCCCCHhHHH-HHHHHHHH
Confidence 36999999999999764 33444433
No 376
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=94.91 E-value=0.044 Score=52.96 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=18.5
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHH
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQHC 183 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~~ 183 (435)
.+..++++||||||||+.. -.++.++
T Consensus 133 ~~glilI~GpTGSGKTTtL-~aLl~~i 158 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLL-AAIIREL 158 (358)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHH
Confidence 4556999999999999842 3344443
No 377
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=94.89 E-value=0.11 Score=48.02 Aligned_cols=138 Identities=16% Similarity=0.173 Sum_probs=65.2
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHH-HHHhhcCCCceEEEEECCCCHH
Q 013858 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEV-KALSRSLDSFKTAIVVGGTNIA 236 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~-~~~~~~~~~~~~~~~~g~~~~~ 236 (435)
|.=++|.|.+|.|||+.+ +-+...+.... +..+++++.-- -..++..++ .... ++....+..+....
T Consensus 19 g~L~vi~a~pg~GKT~~~-l~ia~~~a~~~------~~~vly~SlEm-~~~~l~~R~la~~s----~v~~~~i~~g~l~~ 86 (259)
T PF03796_consen 19 GELTVIAARPGVGKTAFA-LQIALNAALNG------GYPVLYFSLEM-SEEELAARLLARLS----GVPYNKIRSGDLSD 86 (259)
T ss_dssp T-EEEEEESTTSSHHHHH-HHHHHHHHHTT------SSEEEEEESSS--HHHHHHHHHHHHH----TSTHHHHHCCGCHH
T ss_pred CcEEEEEecccCCchHHH-HHHHHHHHHhc------CCeEEEEcCCC-CHHHHHHHHHHHhh----cchhhhhhccccCH
Confidence 445999999999999654 55555444421 35688887421 112222222 3222 12222122232222
Q ss_pred HHHH-------HHhCCCcEEE-E----CcHHHHHHHHcCCCCCCCceEEEEecCCcccCC----CCHHHHHHHHHhCC--
Q 013858 237 EQRS-------ELRGGVSIVV-A----TPGRFLDHLQQGNTSLSRVSFVILDEADRMLDM----GFEPQIREVMQNLP-- 298 (435)
Q Consensus 237 ~~~~-------~~~~~~~I~v-~----T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~----~~~~~i~~i~~~~~-- 298 (435)
.... .+.. ..+.| . |++.+...+..-.....++++||||=.|.+... +....+..+...+.
T Consensus 87 ~e~~~~~~~~~~l~~-~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~l 165 (259)
T PF03796_consen 87 EEFERLQAAAEKLSD-LPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELKAL 165 (259)
T ss_dssp HHHHHHHHHHHHHHT-SEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh-CcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHHHH
Confidence 2211 1222 23443 3 333444443321112267899999999976553 23344444433322
Q ss_pred ---CCCeEEEEcc
Q 013858 299 ---DKHQTLLFSA 308 (435)
Q Consensus 299 ---~~~q~i~~SA 308 (435)
-++.+|++|.
T Consensus 166 A~~~~i~vi~~sQ 178 (259)
T PF03796_consen 166 AKELNIPVIALSQ 178 (259)
T ss_dssp HHHHTSEEEEEEE
T ss_pred HHHcCCeEEEccc
Confidence 1455555554
No 378
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.88 E-value=0.066 Score=46.73 Aligned_cols=31 Identities=32% Similarity=0.404 Sum_probs=24.0
Q ss_pred CcHHHHHHHHHHh-cCCCEEEEccCCCchhHH
Q 013858 144 PTSIQAQAMPVAL-SGRDLLGCAETGSGKTAA 174 (435)
Q Consensus 144 p~~~Q~~~i~~~~-~~~~vii~~~TGsGKT~~ 174 (435)
.++-|...+...+ .|..++++|+||+|||+.
T Consensus 10 ~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTl 41 (186)
T cd01130 10 FSPLQAAYLWLAVEARKNILISGGTGSGKTTL 41 (186)
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 3556666666655 577899999999999984
No 379
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.88 E-value=0.12 Score=53.90 Aligned_cols=38 Identities=13% Similarity=0.190 Sum_probs=23.2
Q ss_pred CCCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEE
Q 013858 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLL 305 (435)
Q Consensus 267 l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~ 305 (435)
..++++|||||||+|... -...+.+.+..-+....+|+
T Consensus 119 ~~~~KViIIDEad~Lt~~-a~naLLK~LEePp~~tvfIL 156 (620)
T PRK14948 119 QARWKVYVIDECHMLSTA-AFNALLKTLEEPPPRVVFVL 156 (620)
T ss_pred cCCceEEEEECccccCHH-HHHHHHHHHhcCCcCeEEEE
Confidence 356899999999987432 23345555555444554444
No 380
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.87 E-value=0.57 Score=49.95 Aligned_cols=74 Identities=18% Similarity=0.220 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCC------cEEEecCCCCHHHHHHHHHHHHc---
Q 013858 352 KVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGL------HAVALHGGRNQSDRESALRDFRN--- 422 (435)
Q Consensus 352 k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~------~v~~lh~~~~~~~R~~~~~~f~~--- 422 (435)
....+.+.+.+... ..++.+|||+++....+.+++.++..|. ...++.-+....++..+++.|+.
T Consensus 506 ~~~~l~~~i~~~~~------~~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~~~~~~~~l~~f~~~~~ 579 (705)
T TIGR00604 506 LVRNLGELLVEFSK------IIPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKDAQETSDALERYKQAVS 579 (705)
T ss_pred HHHHHHHHHHHHhh------cCCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCCCcchHHHHHHHHHHHHh
Confidence 34455555544443 3457799999999999999999876542 11222222222578899999964
Q ss_pred -CCCcEEEEc
Q 013858 423 -GSTNILVFS 431 (435)
Q Consensus 423 -g~~~VLVaT 431 (435)
|+..||+|+
T Consensus 580 ~~~gavL~av 589 (705)
T TIGR00604 580 EGRGAVLLSV 589 (705)
T ss_pred cCCceEEEEe
Confidence 566799987
No 381
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=94.82 E-value=0.3 Score=46.42 Aligned_cols=55 Identities=9% Similarity=0.152 Sum_probs=33.6
Q ss_pred CcHHHHHHHHcCCCCCCCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEccc
Q 013858 252 TPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSAT 309 (435)
Q Consensus 252 T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT 309 (435)
....+.+.+.... ....++++|||+||+|.. .-...+.+++..-+ +..+|+.+..
T Consensus 108 ~ir~i~~~l~~~p-~~~~~kVvII~~ae~m~~-~aaNaLLK~LEEPp-~~~fILi~~~ 162 (314)
T PRK07399 108 QIREIKRFLSRPP-LEAPRKVVVIEDAETMNE-AAANALLKTLEEPG-NGTLILIAPS 162 (314)
T ss_pred HHHHHHHHHccCc-ccCCceEEEEEchhhcCH-HHHHHHHHHHhCCC-CCeEEEEECC
Confidence 3334444444322 346799999999998732 23456777777666 6655555544
No 382
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=94.79 E-value=0.15 Score=52.84 Aligned_cols=39 Identities=33% Similarity=0.472 Sum_probs=25.7
Q ss_pred CCCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEE
Q 013858 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLL 305 (435)
Q Consensus 267 l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~ 305 (435)
+++-.++|+|||..-+|......+.+.+..+.+++.+++
T Consensus 481 l~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~ii 519 (567)
T COG1132 481 LRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLI 519 (567)
T ss_pred hcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEE
Confidence 455578888888877777666677766665555543343
No 383
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.74 E-value=0.27 Score=44.59 Aligned_cols=53 Identities=13% Similarity=0.140 Sum_probs=32.0
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHh
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~ 218 (435)
.|.-+++.|++|+|||+....-+...+ . .+.+++++.=- +-..++.+.+..++
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~-~-------~g~~~~y~~~e-~~~~~~~~~~~~~g 76 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGAL-K-------QGKKVYVITTE-NTSKSYLKQMESVK 76 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHH-h-------CCCEEEEEEcC-CCHHHHHHHHHHCC
Confidence 456799999999999975432222222 2 14567777643 33455666666654
No 384
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=94.70 E-value=0.29 Score=44.50 Aligned_cols=38 Identities=21% Similarity=0.299 Sum_probs=25.4
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEc
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 201 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~ 201 (435)
.|.-++|+|++|+|||+.. +-++....... +..+++++
T Consensus 12 ~G~l~lI~G~~G~GKT~~~-~~~~~~~~~~~------g~~vly~s 49 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFA-LNIAENIAKKQ------GKPVLFFS 49 (242)
T ss_pred CCeEEEEEeCCCCCHHHHH-HHHHHHHHHhC------CCceEEEe
Confidence 5667999999999999643 44444433321 45678877
No 385
>PRK09087 hypothetical protein; Validated
Probab=94.70 E-value=0.13 Score=46.49 Aligned_cols=42 Identities=14% Similarity=0.109 Sum_probs=24.7
Q ss_pred eEEEEecCCcccCCCCHHHHHHHHHhCCC-CCeEEEEcccccHHH
Q 013858 271 SFVILDEADRMLDMGFEPQIREVMQNLPD-KHQTLLFSATMPVEI 314 (435)
Q Consensus 271 ~~iIiDEah~~~~~~~~~~i~~i~~~~~~-~~q~i~~SATl~~~~ 314 (435)
++|+||++|.+. .....+..++..+.. ..++|+.|.+.|+..
T Consensus 89 ~~l~iDDi~~~~--~~~~~lf~l~n~~~~~g~~ilits~~~p~~~ 131 (226)
T PRK09087 89 GPVLIEDIDAGG--FDETGLFHLINSVRQAGTSLLMTSRLWPSSW 131 (226)
T ss_pred CeEEEECCCCCC--CCHHHHHHHHHHHHhCCCeEEEECCCChHHh
Confidence 389999999652 224556666665544 445555454455443
No 386
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=94.67 E-value=0.2 Score=50.83 Aligned_cols=40 Identities=15% Similarity=0.267 Sum_probs=28.4
Q ss_pred CCCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEc
Q 013858 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (435)
Q Consensus 267 l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~S 307 (435)
..+++++||||||++.. +-...+.+.+...++.+.+|+.+
T Consensus 115 ~~~~KVvIIDEad~Lt~-~A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTK-EAFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCH-HHHHHHHHHHhhcCCceEEEEEE
Confidence 45789999999998743 23456667777767777666655
No 387
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.62 E-value=0.1 Score=54.17 Aligned_cols=41 Identities=17% Similarity=0.287 Sum_probs=24.1
Q ss_pred CCCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEccc
Q 013858 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSAT 309 (435)
Q Consensus 267 l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT 309 (435)
+.+.++|||||+|.+... -...+.+.+...+.... +++.++
T Consensus 118 ~~~~kVvIIDEa~~L~~~-a~naLLk~LEepp~~tv-~Il~t~ 158 (585)
T PRK14950 118 LARYKVYIIDEVHMLSTA-AFNALLKTLEEPPPHAI-FILATT 158 (585)
T ss_pred cCCeEEEEEeChHhCCHH-HHHHHHHHHhcCCCCeE-EEEEeC
Confidence 467899999999977432 22344445555444443 444443
No 388
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=94.62 E-value=0.11 Score=53.44 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=19.6
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHH
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQHC 183 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~~ 183 (435)
.|+.+.++||+|||||+ ++-++..+
T Consensus 360 ~G~~vaIvG~SGsGKST--Ll~lL~g~ 384 (529)
T TIGR02868 360 PGERVAILGPSGSGKST--LLMLLTGL 384 (529)
T ss_pred CCCEEEEECCCCCCHHH--HHHHHhcC
Confidence 68889999999999998 44444443
No 389
>COG1485 Predicted ATPase [General function prediction only]
Probab=94.61 E-value=0.77 Score=43.53 Aligned_cols=109 Identities=16% Similarity=0.212 Sum_probs=64.1
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHH
Q 013858 159 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQ 238 (435)
Q Consensus 159 ~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 238 (435)
+.+-+.|+-|.|||+ ++-.+-..+.- . --.-++.-.-+..+.+++..+. |.
T Consensus 66 ~GlYl~GgVGrGKT~--LMD~Fy~~lp~---~------~k~R~HFh~FM~~vH~~l~~l~------------g~------ 116 (367)
T COG1485 66 RGLYLWGGVGRGKTM--LMDLFYESLPG---E------RKRRLHFHRFMARVHQRLHTLQ------------GQ------ 116 (367)
T ss_pred ceEEEECCCCccHHH--HHHHHHhhCCc---c------ccccccHHHHHHHHHHHHHHHc------------CC------
Confidence 568999999999998 55555443221 0 1112344455555666655543 11
Q ss_pred HHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCCCHHHHHHHHHhC-CCCCeEEEEcccccHHH
Q 013858 239 RSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMPVEI 314 (435)
Q Consensus 239 ~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~-~~~~q~i~~SATl~~~~ 314 (435)
.+.+ ..+.+.+ ..+.+++.|||.| +.|.+-...+..++..+ ...+.+++.|-|.|..+
T Consensus 117 -------~dpl----~~iA~~~------~~~~~vLCfDEF~-VtDI~DAMiL~rL~~~Lf~~GV~lvaTSN~~P~~L 175 (367)
T COG1485 117 -------TDPL----PPIADEL------AAETRVLCFDEFE-VTDIADAMILGRLLEALFARGVVLVATSNTAPDNL 175 (367)
T ss_pred -------CCcc----HHHHHHH------HhcCCEEEeeeee-ecChHHHHHHHHHHHHHHHCCcEEEEeCCCChHHh
Confidence 1111 1111222 3467899999999 34555444555555554 45788999999998775
No 390
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=94.60 E-value=0.55 Score=40.94 Aligned_cols=38 Identities=21% Similarity=0.325 Sum_probs=23.0
Q ss_pred CCCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEE
Q 013858 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLL 305 (435)
Q Consensus 267 l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~ 305 (435)
.....+|||||+|++... ....+.+.+...++..-+|+
T Consensus 94 ~~~~kviiide~~~l~~~-~~~~Ll~~le~~~~~~~~il 131 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEA-AANALLKTLEEPPPNTLFIL 131 (188)
T ss_pred cCCeEEEEEechhhhCHH-HHHHHHHHhcCCCCCeEEEE
Confidence 457889999999987432 23345555555444443333
No 391
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=94.53 E-value=0.14 Score=53.70 Aligned_cols=62 Identities=15% Similarity=0.194 Sum_probs=55.1
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCCC
Q 013858 374 FPLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYKLL 435 (435)
Q Consensus 374 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L~ 435 (435)
+.+++|.++++.-|.+.++.+++. |+.+..+||+++..+|..+++...+|+.+|+|+|..++
T Consensus 284 g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll 349 (630)
T TIGR00643 284 GYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALI 349 (630)
T ss_pred CCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHH
Confidence 346999999999999998888753 78999999999999999999999999999999997653
No 392
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=94.51 E-value=0.7 Score=47.04 Aligned_cols=129 Identities=17% Similarity=0.158 Sum_probs=76.2
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHh-hcCCCceEEEEECCCCH
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS-RSLDSFKTAIVVGGTNI 235 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~-~~~~~~~~~~~~g~~~~ 235 (435)
+.+-.+.--|--.|||+. ++|++..++.. -.|-++.|++.-+..+.-+.+++..-. +-++.-.+...-|+
T Consensus 201 KQkaTVFLVPRRHGKTWf-~VpiIsllL~s-----~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k~~--- 271 (668)
T PHA03372 201 KQKATVFLVPRRHGKTWF-IIPIISFLLKN-----IIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENKDN--- 271 (668)
T ss_pred hccceEEEecccCCceeh-HHHHHHHHHHh-----hcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeecCc---
Confidence 345677788999999986 68998888772 237889999999987777766663322 22221112111111
Q ss_pred HHHHHHHhCCCcEEEECcHHHHH-----HHHcCCCCCCCceEEEEecCCcccCCCCHHHHHHHHHhC-CCCCeEEEEccc
Q 013858 236 AEQRSELRGGVSIVVATPGRFLD-----HLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSAT 309 (435)
Q Consensus 236 ~~~~~~~~~~~~I~v~T~~~l~~-----~l~~~~~~l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~-~~~~q~i~~SAT 309 (435)
.|.|.-||.=-. -...+...-..+.++++||||-+ . ...+..|+-.+ .+++|+|..|.|
T Consensus 272 -----------tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI-~---~~a~~tilgfm~q~~~KiIfISS~ 336 (668)
T PHA03372 272 -----------VISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFI-K---KDAFNTILGFLAQNTTKIIFISST 336 (668)
T ss_pred -----------EEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhcc-C---HHHHHHhhhhhcccCceEEEEeCC
Confidence 233333321100 01111233456899999999955 2 33455555444 346788888876
No 393
>PRK06904 replicative DNA helicase; Validated
Probab=94.50 E-value=0.55 Score=47.31 Aligned_cols=113 Identities=15% Similarity=0.192 Sum_probs=53.4
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHH-HHHhhcCCCceEEEE-EC-CCC
Q 013858 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEV-KALSRSLDSFKTAIV-VG-GTN 234 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~-~~~~~~~~~~~~~~~-~g-~~~ 234 (435)
|.=+|+.|.+|.|||+. .+-+....... .+..+++++.- --..|+..++ ...+ ++....+ .| ...
T Consensus 221 G~LiiIaarPg~GKTaf-alnia~~~a~~------~g~~Vl~fSlE-Ms~~ql~~Rlla~~s----~v~~~~i~~g~~l~ 288 (472)
T PRK06904 221 SDLIIVAARPSMGKTTF-AMNLCENAAMA------SEKPVLVFSLE-MPAEQIMMRMLASLS----RVDQTKIRTGQNLD 288 (472)
T ss_pred CcEEEEEeCCCCChHHH-HHHHHHHHHHh------cCCeEEEEecc-CCHHHHHHHHHHhhC----CCCHHHhccCCCCC
Confidence 44589999999999964 34444443321 13446666532 3334444443 2222 2222222 23 222
Q ss_pred HHHHH------HHHhCCCcEEE-----ECcHHHHHHHHcCCCCCCCceEEEEecCCccc
Q 013858 235 IAEQR------SELRGGVSIVV-----ATPGRFLDHLQQGNTSLSRVSFVILDEADRML 282 (435)
Q Consensus 235 ~~~~~------~~~~~~~~I~v-----~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~ 282 (435)
..++. ..+.....+.| .|+..+...+.+-......+++||||=.+.+.
T Consensus 289 ~~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~ 347 (472)
T PRK06904 289 QQDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMR 347 (472)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcC
Confidence 22221 12222344555 24444433332111111257899999888664
No 394
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=94.47 E-value=0.053 Score=37.68 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=19.7
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHh
Q 013858 158 GRDLLGCAETGSGKTAAFTIPMIQHCVA 185 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~~~~~l~~~~~ 185 (435)
|..+++.|++|+|||+ ++-++..++.
T Consensus 23 g~~tli~G~nGsGKST--llDAi~~~L~ 48 (62)
T PF13555_consen 23 GDVTLITGPNGSGKST--LLDAIQTVLY 48 (62)
T ss_pred CcEEEEECCCCCCHHH--HHHHHHHHHc
Confidence 4579999999999998 4555555443
No 395
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=94.45 E-value=0.059 Score=54.80 Aligned_cols=42 Identities=21% Similarity=0.236 Sum_probs=34.0
Q ss_pred CCCcHHHHHHHHHHh----cCCCEEEEccCCCchhHHhHHHHHHHH
Q 013858 142 TRPTSIQAQAMPVAL----SGRDLLGCAETGSGKTAAFTIPMIQHC 183 (435)
Q Consensus 142 ~~p~~~Q~~~i~~~~----~~~~vii~~~TGsGKT~~~~~~~l~~~ 183 (435)
..|+.+|.+.+..+. .|+-.|+..|||+|||+..+=..+.++
T Consensus 14 y~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL 59 (821)
T KOG1133|consen 14 YTPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWL 59 (821)
T ss_pred CCchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHH
Confidence 468999999988765 688999999999999987655555554
No 396
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.41 E-value=0.039 Score=52.74 Aligned_cols=17 Identities=35% Similarity=0.456 Sum_probs=14.9
Q ss_pred CCEEEEccCCCchhHHh
Q 013858 159 RDLLGCAETGSGKTAAF 175 (435)
Q Consensus 159 ~~vii~~~TGsGKT~~~ 175 (435)
+|+++-||.|+|||+.+
T Consensus 385 RNilfyGPPGTGKTm~A 401 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFA 401 (630)
T ss_pred hheeeeCCCCCCchHHH
Confidence 58999999999999743
No 397
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.40 E-value=0.091 Score=47.84 Aligned_cols=53 Identities=15% Similarity=0.161 Sum_probs=35.2
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHh
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~ 218 (435)
.|..+++.|++|+|||+.++-.+...+ .. |..+++++- .+-..++.+.+..++
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~-~~-------ge~~lyvs~-ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGL-QM-------GEPGIYVAL-EEHPVQVRRNMAQFG 72 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH-Hc-------CCcEEEEEe-eCCHHHHHHHHHHhC
Confidence 456799999999999975432233333 21 456888773 456667777777665
No 398
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.37 E-value=0.98 Score=39.77 Aligned_cols=73 Identities=12% Similarity=0.145 Sum_probs=40.9
Q ss_pred HHHHHHHcCCCCCCCceEEEEecCCcccCCCCHHHHHHHHHhC---CCCCeEEEEcccc---cHHHHHHHHHHcCCCeEE
Q 013858 255 RFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL---PDKHQTLLFSATM---PVEIEALAQEYLTDPVQV 328 (435)
Q Consensus 255 ~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~---~~~~q~i~~SATl---~~~~~~~~~~~~~~~~~i 328 (435)
.+++.+.. .....+-+++|||-.....-.+-..++..++..+ ...-++|++|+-+ +.++...++......+..
T Consensus 110 ~~L~~l~~-~~k~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~d~gKvIilTvhp~~l~e~~~~rirs~~d~~l~L 188 (235)
T COG2874 110 KLLDLLLE-FIKRWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLSDLGKVIILTVHPSALDEDVLTRIRSACDVYLRL 188 (235)
T ss_pred HHHHHHHh-hHHhhcCCEEEEecccHHhhcccHHHHHHHHHHHHHHHhCCCEEEEEeChhhcCHHHHHHHHHhhheeEEE
Confidence 34444443 2236678899999998554433334555554443 3355799999875 444444444443333333
No 399
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.32 E-value=0.14 Score=51.84 Aligned_cols=60 Identities=18% Similarity=0.255 Sum_probs=39.5
Q ss_pred HHHHHHhc-----CCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHh
Q 013858 150 QAMPVALS-----GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (435)
Q Consensus 150 ~~i~~~~~-----~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~ 218 (435)
..+..++. |..+++.||+|+|||+..+ -.+..... +|.+++|++ .-+-..|+.++++.++
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~-~f~~~~~~-------~ge~~~y~s-~eEs~~~i~~~~~~lg 314 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVS-KFLENACA-------NKERAILFA-YEESRAQLLRNAYSWG 314 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHH-HHHHHHHH-------CCCeEEEEE-eeCCHHHHHHHHHHcC
Confidence 44555553 4569999999999997432 22222222 156788877 4467778888887775
No 400
>PRK13764 ATPase; Provisional
Probab=94.25 E-value=0.12 Score=53.14 Aligned_cols=26 Identities=15% Similarity=0.267 Sum_probs=19.1
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHH
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQHC 183 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~~ 183 (435)
.+.+++++|+||||||+.. -.++.++
T Consensus 256 ~~~~ILIsG~TGSGKTTll-~AL~~~i 281 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFA-QALAEFY 281 (602)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHH
Confidence 4577999999999999843 3444444
No 401
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.25 E-value=0.15 Score=50.62 Aligned_cols=44 Identities=25% Similarity=0.516 Sum_probs=27.8
Q ss_pred CCceEEEEecCCcccCCC-----CHH----HHHHHHHhCCC-CCeEEEEccccc
Q 013858 268 SRVSFVILDEADRMLDMG-----FEP----QIREVMQNLPD-KHQTLLFSATMP 311 (435)
Q Consensus 268 ~~~~~iIiDEah~~~~~~-----~~~----~i~~i~~~~~~-~~q~i~~SATl~ 311 (435)
+.+++||+|+..|++++. |.. .+.-++++.|+ ..+++++.-|-.
T Consensus 597 S~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~ 650 (744)
T KOG0741|consen 597 SPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSR 650 (744)
T ss_pred CcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccH
Confidence 457899999999999854 322 22233344443 567777776643
No 402
>PRK14701 reverse gyrase; Provisional
Probab=94.20 E-value=0.15 Score=58.67 Aligned_cols=62 Identities=18% Similarity=0.236 Sum_probs=54.6
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhC------CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCCC
Q 013858 374 FPLTIVFVERKTRCDEVSEALVAE------GLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYKLL 435 (435)
Q Consensus 374 ~~~~lVF~~~~~~~~~l~~~L~~~------~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L~ 435 (435)
+.++||.++++.-+.++++.|+.. ++.+..+||+++..++..+++.+++|..+|||+|+-+|
T Consensus 122 g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL 189 (1638)
T PRK14701 122 GKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFL 189 (1638)
T ss_pred CCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchh
Confidence 346999999999999999999873 46788999999999999999999999999999998643
No 403
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=94.13 E-value=0.094 Score=48.76 Aligned_cols=43 Identities=21% Similarity=0.291 Sum_probs=28.6
Q ss_pred hcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhh
Q 013858 156 LSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL 206 (435)
Q Consensus 156 ~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~l 206 (435)
..+.+++++|+||||||+.. -.++..+... ..+++++-...|+
T Consensus 125 ~~~~~ili~G~tGSGKTT~l-~all~~i~~~-------~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTLL-NALLEEIPPE-------DERIVTIEDPPEL 167 (270)
T ss_dssp HTTEEEEEEESTTSSHHHHH-HHHHHHCHTT-------TSEEEEEESSS-S
T ss_pred ccceEEEEECCCccccchHH-HHHhhhcccc-------ccceEEeccccce
Confidence 35678999999999999843 3444443221 2567777777776
No 404
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=94.13 E-value=0.25 Score=49.91 Aligned_cols=18 Identities=28% Similarity=0.314 Sum_probs=15.3
Q ss_pred CCCEEEEccCCCchhHHh
Q 013858 158 GRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~ 175 (435)
.+.+++.||+|+|||+.+
T Consensus 216 p~GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIA 233 (512)
T ss_pred CcceEEECCCCCcHHHHH
Confidence 457999999999999843
No 405
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=94.11 E-value=0.46 Score=50.64 Aligned_cols=18 Identities=39% Similarity=0.399 Sum_probs=15.5
Q ss_pred CCCEEEEccCCCchhHHh
Q 013858 158 GRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~ 175 (435)
..++++.||+|+|||..+
T Consensus 207 ~~n~LLvGppGvGKT~la 224 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIA 224 (758)
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 457999999999999854
No 406
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.09 E-value=0.77 Score=44.76 Aligned_cols=132 Identities=19% Similarity=0.190 Sum_probs=75.1
Q ss_pred CEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEc--cChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHH
Q 013858 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA--PTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAE 237 (435)
Q Consensus 160 ~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~--P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 237 (435)
.++++|=-|||||++.. -+-.++..+ +.++++++ -.|..|..+ ++.++... ++.+.-...+.+.-+
T Consensus 102 vImmvGLQGsGKTTt~~-KLA~~lkk~-------~~kvllVaaD~~RpAA~eQ---L~~La~q~-~v~~f~~~~~~~Pv~ 169 (451)
T COG0541 102 VILMVGLQGSGKTTTAG-KLAKYLKKK-------GKKVLLVAADTYRPAAIEQ---LKQLAEQV-GVPFFGSGTEKDPVE 169 (451)
T ss_pred EEEEEeccCCChHhHHH-HHHHHHHHc-------CCceEEEecccCChHHHHH---HHHHHHHc-CCceecCCCCCCHHH
Confidence 37889999999998653 233333332 45566665 455665544 45555443 222222111111111
Q ss_pred HHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCccc-CCCCHHHHHHHHHhCCCCCeEEEEcccccHHHHH
Q 013858 238 QRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRML-DMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEA 316 (435)
Q Consensus 238 ~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~-~~~~~~~i~~i~~~~~~~~q~i~~SATl~~~~~~ 316 (435)
...+.+. ......+++||||=|-|+. +......+..|...+.|+--++.+-|+...+...
T Consensus 170 -----------------Iak~al~--~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~ 230 (451)
T COG0541 170 -----------------IAKAALE--KAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVN 230 (451)
T ss_pred -----------------HHHHHHH--HHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHH
Confidence 1111122 1223457899999998653 3335567777777777776677888888777777
Q ss_pred HHHHHc
Q 013858 317 LAQEYL 322 (435)
Q Consensus 317 ~~~~~~ 322 (435)
.++.|-
T Consensus 231 ~A~aF~ 236 (451)
T COG0541 231 TAKAFN 236 (451)
T ss_pred HHHHHh
Confidence 776664
No 407
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=94.08 E-value=0.073 Score=48.15 Aligned_cols=14 Identities=29% Similarity=0.434 Sum_probs=12.3
Q ss_pred EEEEccCCCchhHH
Q 013858 161 LLGCAETGSGKTAA 174 (435)
Q Consensus 161 vii~~~TGsGKT~~ 174 (435)
++|.|+.|+|||..
T Consensus 1 ~vv~G~pGsGKSt~ 14 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL 14 (234)
T ss_pred CEEEcCCCCCHHHH
Confidence 47999999999984
No 408
>PF12846 AAA_10: AAA-like domain
Probab=94.06 E-value=0.072 Score=50.10 Aligned_cols=43 Identities=23% Similarity=0.485 Sum_probs=30.0
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHH
Q 013858 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQ 208 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~ 208 (435)
+.+++|+|+||+|||+... .++..+... +..++++=|..+...
T Consensus 1 n~h~~i~G~tGsGKT~~~~-~l~~~~~~~-------g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK-NLLEQLIRR-------GPRVVIFDPKGDYSP 43 (304)
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHHHc-------CCCEEEEcCCchHHH
Confidence 4679999999999998754 555555553 466777766655443
No 409
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=94.03 E-value=0.49 Score=40.49 Aligned_cols=53 Identities=26% Similarity=0.439 Sum_probs=34.8
Q ss_pred CCCCceEEEEecCCcccCCCCH--HHHHHHHHhCCCCCeEEEEcccccHHHHHHH
Q 013858 266 SLSRVSFVILDEADRMLDMGFE--PQIREVMQNLPDKHQTLLFSATMPVEIEALA 318 (435)
Q Consensus 266 ~l~~~~~iIiDEah~~~~~~~~--~~i~~i~~~~~~~~q~i~~SATl~~~~~~~~ 318 (435)
.-..+++||+||+-..++.++. ..+..++...|+..-+|+.--..|+.+.+.+
T Consensus 93 ~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~A 147 (172)
T PF02572_consen 93 SSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEAA 147 (172)
T ss_dssp T-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH-
T ss_pred hCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHhC
Confidence 3467999999999977777754 5788888887888877777677777776654
No 410
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.02 E-value=0.19 Score=52.18 Aligned_cols=41 Identities=12% Similarity=0.142 Sum_probs=24.9
Q ss_pred CCCCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEc
Q 013858 266 SLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (435)
Q Consensus 266 ~l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~S 307 (435)
.+.+.+++||||+|++... -...+.+.+...++..-+|+.+
T Consensus 124 ~~~~~KVvIIdEad~Lt~~-a~naLLK~LEePp~~tv~IL~t 164 (620)
T PRK14954 124 QKGRYRVYIIDEVHMLSTA-AFNAFLKTLEEPPPHAIFIFAT 164 (620)
T ss_pred hcCCCEEEEEeChhhcCHH-HHHHHHHHHhCCCCCeEEEEEe
Confidence 3567899999999987432 1334555555545555444444
No 411
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=93.99 E-value=0.067 Score=46.33 Aligned_cols=43 Identities=19% Similarity=0.393 Sum_probs=28.8
Q ss_pred CCCceEEEEecCCcccCCCCHHHHHHHHHhCCC-CCeEEEEccc
Q 013858 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPD-KHQTLLFSAT 309 (435)
Q Consensus 267 l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~-~~q~i~~SAT 309 (435)
+.+.+++++||...-++......+...+..+.. ..++|+.|--
T Consensus 114 ~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~ 157 (178)
T cd03239 114 IKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLK 157 (178)
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 356789999999987776656666666655433 3566666543
No 412
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=93.99 E-value=0.093 Score=54.19 Aligned_cols=151 Identities=16% Similarity=0.223 Sum_probs=89.6
Q ss_pred CCcHHHHHHHHHHh--------cCC--CEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHH
Q 013858 143 RPTSIQAQAMPVAL--------SGR--DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEK 212 (435)
Q Consensus 143 ~p~~~Q~~~i~~~~--------~~~--~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~ 212 (435)
.+...|.+++-.+. .|. ..+|....|.||-.+..-.++...++- ..++|++.-+..|--...+
T Consensus 264 ~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkG-------RKrAlW~SVSsDLKfDAER 336 (1300)
T KOG1513|consen 264 HLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKG-------RKRALWFSVSSDLKFDAER 336 (1300)
T ss_pred chhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhcc-------cceeEEEEeccccccchhh
Confidence 45667888776544 343 356666677777543222344433331 4679999888788766667
Q ss_pred HHHHHhhcCCCceEEE--------EECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCC------------CCCC-ce
Q 013858 213 EVKALSRSLDSFKTAI--------VVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNT------------SLSR-VS 271 (435)
Q Consensus 213 ~~~~~~~~~~~~~~~~--------~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~------------~l~~-~~ 271 (435)
.++..+.. ++.+.. +.+..+ -.-.-.|+|+|+..|.-+-+.... .-.+ =.
T Consensus 337 DL~DigA~--~I~V~alnK~KYakIss~en-------~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feG 407 (1300)
T KOG1513|consen 337 DLRDIGAT--GIAVHALNKFKYAKISSKEN-------TNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEG 407 (1300)
T ss_pred chhhcCCC--Cccceehhhccccccccccc-------CCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccce
Confidence 67666533 233322 221111 011236999999888654432110 0111 26
Q ss_pred EEEEecCCcccC---------CCCHHHHHHHHHhCCCCCeEEEEcccc
Q 013858 272 FVILDEADRMLD---------MGFEPQIREVMQNLPDKHQTLLFSATM 310 (435)
Q Consensus 272 ~iIiDEah~~~~---------~~~~~~i~~i~~~~~~~~q~i~~SATl 310 (435)
+||+||||+-.| .-.+..+..+.+.+|+. ++|..|||=
T Consensus 408 vIvfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP~A-RVVYASATG 454 (1300)
T KOG1513|consen 408 VIVFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKLPNA-RVVYASATG 454 (1300)
T ss_pred eEEehhhhhhcccccccCCCcCcccHhHHHHHHhCCCc-eEEEeeccC
Confidence 899999997655 12667888888888765 589999994
No 413
>PHA00350 putative assembly protein
Probab=93.97 E-value=1.6 Score=42.58 Aligned_cols=17 Identities=18% Similarity=0.069 Sum_probs=13.9
Q ss_pred EEEEccCCCchhHHhHH
Q 013858 161 LLGCAETGSGKTAAFTI 177 (435)
Q Consensus 161 vii~~~TGsGKT~~~~~ 177 (435)
.++.|..|||||+.++-
T Consensus 4 ~l~tG~pGSGKT~~aV~ 20 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVV 20 (399)
T ss_pred EEEecCCCCchhHHHHH
Confidence 57899999999986543
No 414
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=93.94 E-value=0.82 Score=42.81 Aligned_cols=26 Identities=15% Similarity=0.234 Sum_probs=22.2
Q ss_pred chHHHHHHHHHHHhCCCcEEEecCCCC
Q 013858 383 RKTRCDEVSEALVAEGLHAVALHGGRN 409 (435)
Q Consensus 383 ~~~~~~~l~~~L~~~~~~v~~lh~~~~ 409 (435)
+..-+++|++.|+ .|+.|...|-++.
T Consensus 259 SV~~~e~l~~~l~-~~~~v~~~Hrd~~ 284 (288)
T PRK05416 259 SVAIAERLAERLS-KGYNVQVRHRDLE 284 (288)
T ss_pred HHHHHHHHHHHHh-CCCcEEEEeCccc
Confidence 4778999999994 6899999999875
No 415
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.94 E-value=0.19 Score=48.54 Aligned_cols=18 Identities=33% Similarity=0.394 Sum_probs=15.3
Q ss_pred cCCCEEEEccCCCchhHH
Q 013858 157 SGRDLLGCAETGSGKTAA 174 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~ 174 (435)
.+..++++||||||||+.
T Consensus 121 ~~g~ili~G~tGSGKTT~ 138 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTT 138 (343)
T ss_pred cCcEEEEECCCCCCHHHH
Confidence 345699999999999984
No 416
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=93.92 E-value=0.26 Score=46.64 Aligned_cols=17 Identities=35% Similarity=0.339 Sum_probs=14.5
Q ss_pred CCEEEEccCCCchhHHh
Q 013858 159 RDLLGCAETGSGKTAAF 175 (435)
Q Consensus 159 ~~vii~~~TGsGKT~~~ 175 (435)
.+++++||.|+|||..+
T Consensus 31 ~~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLA 47 (305)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46999999999999743
No 417
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.84 E-value=0.58 Score=47.32 Aligned_cols=41 Identities=15% Similarity=0.258 Sum_probs=24.0
Q ss_pred CCCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEccc
Q 013858 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSAT 309 (435)
Q Consensus 267 l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT 309 (435)
..++.++||||||.+... ....+.+.+...++.. ++++.+|
T Consensus 117 ~~~~KVvIIDEad~Lt~~-a~naLLk~LEepp~~~-v~Il~tt 157 (486)
T PRK14953 117 KGKYKVYIIDEAHMLTKE-AFNALLKTLEEPPPRT-IFILCTT 157 (486)
T ss_pred cCCeeEEEEEChhhcCHH-HHHHHHHHHhcCCCCe-EEEEEEC
Confidence 457899999999977432 2234444555444444 3444434
No 418
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=93.83 E-value=0.53 Score=40.46 Aligned_cols=54 Identities=22% Similarity=0.396 Sum_probs=40.0
Q ss_pred CCceEEEEecCCcccCCCC--HHHHHHHHHhCCCCCeEEEEcccccHHHHHHHHHH
Q 013858 268 SRVSFVILDEADRMLDMGF--EPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEY 321 (435)
Q Consensus 268 ~~~~~iIiDEah~~~~~~~--~~~i~~i~~~~~~~~q~i~~SATl~~~~~~~~~~~ 321 (435)
.++++||+||.-..+..|+ ...+..++...|...-+|+.--..|+.+-+++...
T Consensus 121 ~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ADlV 176 (198)
T COG2109 121 GKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELADLV 176 (198)
T ss_pred CCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHHHH
Confidence 4799999999997777774 35778888877777766666666787777665443
No 419
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=93.83 E-value=0.3 Score=44.77 Aligned_cols=16 Identities=31% Similarity=0.314 Sum_probs=14.3
Q ss_pred CEEEEccCCCchhHHh
Q 013858 160 DLLGCAETGSGKTAAF 175 (435)
Q Consensus 160 ~vii~~~TGsGKT~~~ 175 (435)
++++.||.|.|||+.+
T Consensus 54 HvLl~GPPGlGKTTLA 69 (332)
T COG2255 54 HVLLFGPPGLGKTTLA 69 (332)
T ss_pred eEEeeCCCCCcHHHHH
Confidence 6999999999999854
No 420
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=93.82 E-value=1.2 Score=38.24 Aligned_cols=52 Identities=29% Similarity=0.502 Sum_probs=40.7
Q ss_pred CCCceEEEEecCCcccCCCC--HHHHHHHHHhCCCCCeEEEEcccccHHHHHHH
Q 013858 267 LSRVSFVILDEADRMLDMGF--EPQIREVMQNLPDKHQTLLFSATMPVEIEALA 318 (435)
Q Consensus 267 l~~~~~iIiDEah~~~~~~~--~~~i~~i~~~~~~~~q~i~~SATl~~~~~~~~ 318 (435)
-..+++||+||+-..++.|+ ...+..++...|+..-+|+.--..|+.+.+.+
T Consensus 113 ~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Lie~A 166 (178)
T PRK07414 113 EGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLLAIA 166 (178)
T ss_pred CCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhC
Confidence 35799999999997777775 45788888888888877777777787776654
No 421
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=93.80 E-value=0.11 Score=49.39 Aligned_cols=20 Identities=35% Similarity=0.449 Sum_probs=17.0
Q ss_pred HhcCCCEEEEccCCCchhHH
Q 013858 155 ALSGRDLLGCAETGSGKTAA 174 (435)
Q Consensus 155 ~~~~~~vii~~~TGsGKT~~ 174 (435)
+..+.+++++|+||||||+.
T Consensus 141 v~~~~~ili~G~tGsGKTTl 160 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTF 160 (308)
T ss_pred hhCCCEEEEECCCCCCHHHH
Confidence 33678999999999999983
No 422
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.78 E-value=0.41 Score=49.87 Aligned_cols=42 Identities=12% Similarity=0.239 Sum_probs=26.6
Q ss_pred CCCCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEccc
Q 013858 266 SLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSAT 309 (435)
Q Consensus 266 ~l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT 309 (435)
....++++||||||++... -...+.+.+...+...- +++.+|
T Consensus 118 ~~~~~KVvIIdea~~Ls~~-a~naLLK~LEepp~~ti-fIL~tt 159 (614)
T PRK14971 118 QIGKYKIYIIDEVHMLSQA-AFNAFLKTLEEPPSYAI-FILATT 159 (614)
T ss_pred ccCCcEEEEEECcccCCHH-HHHHHHHHHhCCCCCeE-EEEEeC
Confidence 3567899999999987432 23455566666555554 444444
No 423
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=93.76 E-value=0.28 Score=46.50 Aligned_cols=16 Identities=25% Similarity=0.382 Sum_probs=14.3
Q ss_pred CEEEEccCCCchhHHh
Q 013858 160 DLLGCAETGSGKTAAF 175 (435)
Q Consensus 160 ~vii~~~TGsGKT~~~ 175 (435)
.+|++||.|+|||+.+
T Consensus 164 SmIlWGppG~GKTtlA 179 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLA 179 (554)
T ss_pred ceEEecCCCCchHHHH
Confidence 5999999999999854
No 424
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=93.76 E-value=0.62 Score=49.87 Aligned_cols=17 Identities=41% Similarity=0.417 Sum_probs=14.9
Q ss_pred CCEEEEccCCCchhHHh
Q 013858 159 RDLLGCAETGSGKTAAF 175 (435)
Q Consensus 159 ~~vii~~~TGsGKT~~~ 175 (435)
.++++.||+|+|||+.+
T Consensus 204 ~n~lL~G~pG~GKT~l~ 220 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIA 220 (731)
T ss_pred CceEEECCCCCCHHHHH
Confidence 47999999999999854
No 425
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=93.75 E-value=0.55 Score=51.14 Aligned_cols=17 Identities=35% Similarity=0.399 Sum_probs=14.9
Q ss_pred CCEEEEccCCCchhHHh
Q 013858 159 RDLLGCAETGSGKTAAF 175 (435)
Q Consensus 159 ~~vii~~~TGsGKT~~~ 175 (435)
.+.++.||+|+|||..+
T Consensus 195 ~n~lL~G~pGvGKT~l~ 211 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIV 211 (852)
T ss_pred CceEEEcCCCCCHHHHH
Confidence 47999999999999854
No 426
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=93.71 E-value=0.2 Score=48.09 Aligned_cols=63 Identities=19% Similarity=0.189 Sum_probs=39.6
Q ss_pred HHHHHHCCCCCCcHHHHHHHHHHh-cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhh
Q 013858 133 MKDIEFHEYTRPTSIQAQAMPVAL-SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL 206 (435)
Q Consensus 133 ~~~l~~~~~~~p~~~Q~~~i~~~~-~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~l 206 (435)
+..+...|+ ..+.+...+..+. .+.+++++|+||+|||+. +..+..+.. ...+++++-.+.|+
T Consensus 154 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTl--l~al~~~i~-------~~~riv~iEd~~El 217 (340)
T TIGR03819 154 LDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTL--LSALLALVA-------PDERIVLVEDAAEL 217 (340)
T ss_pred HHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHH--HHHHHccCC-------CCCcEEEECCccee
Confidence 345555555 3456666666655 456899999999999973 333333222 13457777777676
No 427
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=93.67 E-value=0.27 Score=51.59 Aligned_cols=40 Identities=15% Similarity=0.186 Sum_probs=24.7
Q ss_pred CCCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEc
Q 013858 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (435)
Q Consensus 267 l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~S 307 (435)
..+++++||||||.|... -...+.+.+...+....+|+++
T Consensus 116 ~g~~KV~IIDEa~~LT~~-A~NALLKtLEEPP~~tifILaT 155 (725)
T PRK07133 116 QSKYKIYIIDEVHMLSKS-AFNALLKTLEEPPKHVIFILAT 155 (725)
T ss_pred cCCCEEEEEEChhhCCHH-HHHHHHHHhhcCCCceEEEEEc
Confidence 467899999999977432 2334555555545555444444
No 428
>PRK10865 protein disaggregation chaperone; Provisional
Probab=93.62 E-value=0.3 Score=53.08 Aligned_cols=17 Identities=35% Similarity=0.399 Sum_probs=14.8
Q ss_pred CCEEEEccCCCchhHHh
Q 013858 159 RDLLGCAETGSGKTAAF 175 (435)
Q Consensus 159 ~~vii~~~TGsGKT~~~ 175 (435)
.++++.||+|+|||+.+
T Consensus 200 ~n~lL~G~pGvGKT~l~ 216 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIV 216 (857)
T ss_pred CceEEECCCCCCHHHHH
Confidence 47999999999999854
No 429
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=93.62 E-value=0.059 Score=54.49 Aligned_cols=50 Identities=30% Similarity=0.351 Sum_probs=38.0
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHh
Q 013858 159 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (435)
Q Consensus 159 ~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~ 218 (435)
.++++.|+||||||..+++|.+.. . +.-++|+=|.-+|........++.+
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~---~-------~~s~iV~D~KgEl~~~t~~~r~~~G 94 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLN---Y-------PGSMIVTDPKGELYEKTAGYRKKRG 94 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHh---c-------cCCEEEEECCCcHHHHHHHHHHHCC
Confidence 479999999999999999997643 1 1247777788899877766665544
No 430
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=93.61 E-value=0.24 Score=51.00 Aligned_cols=41 Identities=20% Similarity=0.276 Sum_probs=24.1
Q ss_pred CCCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEccc
Q 013858 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSAT 309 (435)
Q Consensus 267 l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT 309 (435)
..+++++||||+|++... ....+.+.+...++.. ++++.+|
T Consensus 117 ~~~~KVvIIDEa~~Ls~~-a~naLLK~LEepp~~~-vfI~~tt 157 (563)
T PRK06647 117 SSRYRVYIIDEVHMLSNS-AFNALLKTIEEPPPYI-VFIFATT 157 (563)
T ss_pred cCCCEEEEEEChhhcCHH-HHHHHHHhhccCCCCE-EEEEecC
Confidence 467899999999987432 2334444444434444 3444444
No 431
>PRK09354 recA recombinase A; Provisional
Probab=93.60 E-value=0.29 Score=46.92 Aligned_cols=42 Identities=24% Similarity=0.233 Sum_probs=27.6
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhh
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL 206 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~l 206 (435)
.|+-+.|.||+|+|||+.. +.++...... +..++++-.-..+
T Consensus 59 ~G~IteI~G~~GsGKTtLa-l~~~~~~~~~-------G~~~~yId~E~s~ 100 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLA-LHAIAEAQKA-------GGTAAFIDAEHAL 100 (349)
T ss_pred CCeEEEEECCCCCCHHHHH-HHHHHHHHHc-------CCcEEEECCccch
Confidence 4567899999999999765 3333333332 5678887754444
No 432
>PRK05973 replicative DNA helicase; Provisional
Probab=93.59 E-value=0.28 Score=44.38 Aligned_cols=66 Identities=18% Similarity=0.218 Sum_probs=38.8
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHh
Q 013858 143 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (435)
Q Consensus 143 ~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~ 218 (435)
.++|. .+..--+..|.-++|.|++|+|||+.. +-++...... |..++|++-- +-..|+.+++..++
T Consensus 50 ~~~p~-~~l~GGl~~Gsl~LIaG~PG~GKT~la-lqfa~~~a~~-------Ge~vlyfSlE-es~~~i~~R~~s~g 115 (237)
T PRK05973 50 ATTPA-EELFSQLKPGDLVLLGARPGHGKTLLG-LELAVEAMKS-------GRTGVFFTLE-YTEQDVRDRLRALG 115 (237)
T ss_pred CCCCH-HHhcCCCCCCCEEEEEeCCCCCHHHHH-HHHHHHHHhc-------CCeEEEEEEe-CCHHHHHHHHHHcC
Confidence 34552 223334446677999999999999754 3222322221 4567777533 33566777776664
No 433
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=93.54 E-value=0.79 Score=45.64 Aligned_cols=38 Identities=18% Similarity=0.286 Sum_probs=23.8
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEc
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 201 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~ 201 (435)
.|.-+++.|++|+|||... +-+...+... .+..++++.
T Consensus 193 ~g~liviag~pg~GKT~~a-l~ia~~~a~~------~g~~v~~fS 230 (421)
T TIGR03600 193 KGDLIVIGARPSMGKTTLA-LNIAENVALR------EGKPVLFFS 230 (421)
T ss_pred CCceEEEEeCCCCCHHHHH-HHHHHHHHHh------CCCcEEEEE
Confidence 4556999999999999643 4444343311 134567765
No 434
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=93.53 E-value=0.44 Score=51.08 Aligned_cols=18 Identities=28% Similarity=0.383 Sum_probs=15.6
Q ss_pred cCCCEEEEccCCCchhHH
Q 013858 157 SGRDLLGCAETGSGKTAA 174 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~ 174 (435)
.++.+++.||+|+|||+.
T Consensus 211 ~~~giLL~GppGtGKT~l 228 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLL 228 (733)
T ss_pred CCceEEEECCCCCChHHH
Confidence 456799999999999974
No 435
>PRK05748 replicative DNA helicase; Provisional
Probab=93.50 E-value=0.72 Score=46.33 Aligned_cols=49 Identities=14% Similarity=0.158 Sum_probs=28.3
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHH
Q 013858 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEV 214 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~ 214 (435)
|.-++|.|.+|.|||+. .+-+....... .+..+++++. -.-..|+..++
T Consensus 203 G~livIaarpg~GKT~~-al~ia~~~a~~------~g~~v~~fSl-Ems~~~l~~R~ 251 (448)
T PRK05748 203 NDLIIVAARPSVGKTAF-ALNIAQNVATK------TDKNVAIFSL-EMGAESLVMRM 251 (448)
T ss_pred CceEEEEeCCCCCchHH-HHHHHHHHHHh------CCCeEEEEeC-CCCHHHHHHHH
Confidence 44589999999999964 45454443321 1344666653 23344554444
No 436
>PRK07004 replicative DNA helicase; Provisional
Probab=93.49 E-value=0.46 Score=47.76 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=17.5
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHH
Q 013858 158 GRDLLGCAETGSGKTAAFTIPMIQHC 183 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~~~~~l~~~ 183 (435)
|.-+++.|.+|+|||.. .+-+..+.
T Consensus 213 g~liviaarpg~GKT~~-al~ia~~~ 237 (460)
T PRK07004 213 GELIIVAGRPSMGKTAF-SMNIGEYV 237 (460)
T ss_pred CceEEEEeCCCCCccHH-HHHHHHHH
Confidence 44589999999999964 34444433
No 437
>PRK04841 transcriptional regulator MalT; Provisional
Probab=93.47 E-value=0.64 Score=51.20 Aligned_cols=43 Identities=12% Similarity=0.373 Sum_probs=33.6
Q ss_pred CceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEccccc
Q 013858 269 RVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMP 311 (435)
Q Consensus 269 ~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SATl~ 311 (435)
.=-+||||++|.+-+......+..++...+....+|+.|-+.|
T Consensus 121 ~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~ 163 (903)
T PRK04841 121 QPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLP 163 (903)
T ss_pred CCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCC
Confidence 3458999999987555556678888888888888888887743
No 438
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.44 E-value=0.086 Score=48.92 Aligned_cols=27 Identities=30% Similarity=0.326 Sum_probs=18.9
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHh
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVA 185 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~~~~ 185 (435)
...|+++.||||||||+.++ -+..++.
T Consensus 96 ~KSNILLiGPTGsGKTlLAq--TLAk~Ln 122 (408)
T COG1219 96 SKSNILLIGPTGSGKTLLAQ--TLAKILN 122 (408)
T ss_pred eeccEEEECCCCCcHHHHHH--HHHHHhC
Confidence 34579999999999998442 3444443
No 439
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=93.43 E-value=0.043 Score=53.93 Aligned_cols=49 Identities=31% Similarity=0.347 Sum_probs=36.3
Q ss_pred CEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHh
Q 013858 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (435)
Q Consensus 160 ~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~ 218 (435)
+++++|+||+|||.++++|-+... +..++|+=|.-++........+..+
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~----------~~s~vv~D~Kge~~~~t~~~r~~~G 49 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW----------PGSVVVLDPKGENFELTSEHRRALG 49 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC----------CCCEEEEccchhHHHHHHHHHHHcC
Confidence 478999999999999888866531 2457777788888876665555443
No 440
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.38 E-value=0.18 Score=46.57 Aligned_cols=53 Identities=13% Similarity=0.164 Sum_probs=30.9
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEc---cChhhHHHHHHHHHHH
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA---PTRELAQQIEKEVKAL 217 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~---P~r~la~q~~~~~~~~ 217 (435)
.|.-++|.|++|+|||+..+ -++..... .+..++++. |...+..++.+.+..+
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~-qf~~~~a~-------~Ge~vlyis~Ee~~~~~~~~l~~~a~~~ 90 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVE-QFAVTQAS-------RGNPVLFVTVESPANFVYTSLKERAKAM 90 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHH-HHHHHHHh-------CCCcEEEEEecCCchHHHHHHHHHHHHc
Confidence 45679999999999997442 22222222 145688877 3334444444444444
No 441
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=93.37 E-value=0.69 Score=45.06 Aligned_cols=18 Identities=33% Similarity=0.302 Sum_probs=16.4
Q ss_pred cCCCEEEEccCCCchhHH
Q 013858 157 SGRDLLGCAETGSGKTAA 174 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~ 174 (435)
.|+.++|.||+|+|||+.
T Consensus 167 ~Gq~~~IvG~~g~GKTtL 184 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVL 184 (415)
T ss_pred CCCEEEEECCCCCChhHH
Confidence 688899999999999984
No 442
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=93.36 E-value=0.81 Score=48.44 Aligned_cols=74 Identities=23% Similarity=0.165 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCC-cEEEecCCCCHHHHHHHHHHHHcCCC-cEEE
Q 013858 352 KVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGL-HAVALHGGRNQSDRESALRDFRNGST-NILV 429 (435)
Q Consensus 352 k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~-~v~~lh~~~~~~~R~~~~~~f~~g~~-~VLV 429 (435)
-...+...+..... ..++++|||+++.+..+.+++.++.... -....+|..+. ...++.|+.+.- -++|
T Consensus 463 ~~~~~~~~i~~~~~------~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~~---~~~l~~f~~~~~~~~lv 533 (654)
T COG1199 463 LLAKLAAYLREILK------ASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDER---EELLEKFKASGEGLILV 533 (654)
T ss_pred HHHHHHHHHHHHHh------hcCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCcH---HHHHHHHHHhcCCeEEE
Confidence 34444444444443 3344799999999999999999988765 34556666554 478888887655 8999
Q ss_pred EcCCC
Q 013858 430 FSYKL 434 (435)
Q Consensus 430 aT~~L 434 (435)
+|..+
T Consensus 534 ~~gsf 538 (654)
T COG1199 534 GGGSF 538 (654)
T ss_pred eeccc
Confidence 98754
No 443
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=93.35 E-value=0.13 Score=45.46 Aligned_cols=14 Identities=43% Similarity=0.615 Sum_probs=12.9
Q ss_pred EEEEccCCCchhHH
Q 013858 161 LLGCAETGSGKTAA 174 (435)
Q Consensus 161 vii~~~TGsGKT~~ 174 (435)
++++||||||||+.
T Consensus 4 ilI~GptGSGKTTl 17 (198)
T cd01131 4 VLVTGPTGSGKSTT 17 (198)
T ss_pred EEEECCCCCCHHHH
Confidence 78999999999985
No 444
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=93.34 E-value=0.22 Score=53.38 Aligned_cols=17 Identities=29% Similarity=0.378 Sum_probs=14.5
Q ss_pred CCEEEEccCCCchhHHh
Q 013858 159 RDLLGCAETGSGKTAAF 175 (435)
Q Consensus 159 ~~vii~~~TGsGKT~~~ 175 (435)
+.+++.||+|+|||+.+
T Consensus 488 ~giLL~GppGtGKT~la 504 (733)
T TIGR01243 488 KGVLLFGPPGTGKTLLA 504 (733)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46999999999999843
No 445
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=93.33 E-value=0.3 Score=53.20 Aligned_cols=60 Identities=18% Similarity=0.229 Sum_probs=53.6
Q ss_pred CcEEEEeCchHHHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 375 PLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 375 ~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
.+++|.++|+.-|.+.++.+++. ++.+..++|..+..++..+++.+++|+.+|+|+|..|
T Consensus 501 ~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~l 564 (926)
T TIGR00580 501 KQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKL 564 (926)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHH
Confidence 46999999999999999888763 6788999999999999999999999999999999644
No 446
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=93.33 E-value=0.45 Score=39.52 Aligned_cols=31 Identities=23% Similarity=0.414 Sum_probs=23.5
Q ss_pred CCCceEEEEecCCcccCCCCHHHHHHHHHhC
Q 013858 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNL 297 (435)
Q Consensus 267 l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~ 297 (435)
..+-+++|+||.-.-++......+..++..+
T Consensus 86 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~ 116 (144)
T cd03221 86 LENPNLLLLDEPTNHLDLESIEALEEALKEY 116 (144)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHc
Confidence 4466899999999777776666777777665
No 447
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=93.26 E-value=0.89 Score=44.01 Aligned_cols=117 Identities=21% Similarity=0.210 Sum_probs=50.6
Q ss_pred EEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccCh-hhHHHHHH---HHHHHhhcCCCceEEEEECCCCHHH
Q 013858 162 LGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTR-ELAQQIEK---EVKALSRSLDSFKTAIVVGGTNIAE 237 (435)
Q Consensus 162 ii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r-~la~q~~~---~~~~~~~~~~~~~~~~~~g~~~~~~ 237 (435)
++.++-|+|||+...+.++.++.... +...++++|+. .+...+.. .+..+.................
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~------~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 71 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRP------PGRRVIIASTYRQARDIFGRFWKGIIELLPSWFEIKFNEWNDRKI--- 71 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSS------S--EEEEEESSHHHHHHHHHHHHHHHHTS-TTTS--EEEE-SSEE---
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCC------CCcEEEEecCHHHHHHHHHHhHHHHHHHHHHhcCcccccCCCCcE---
Confidence 57889999999987776666666532 11344444666 44444333 2222222211111111111110
Q ss_pred HHHHHhCCCcEEEECcHHH--HHHHHcCCCCCCCceEEEEecCCcccCCCCHHHHHHHHH
Q 013858 238 QRSELRGGVSIVVATPGRF--LDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQ 295 (435)
Q Consensus 238 ~~~~~~~~~~I~v~T~~~l--~~~l~~~~~~l~~~~~iIiDEah~~~~~~~~~~i~~i~~ 295 (435)
.+.++..|.+.+.+.- ..-+ ++ ..++++|+||+-.+.+..+...+...+.
T Consensus 72 ---~~~nG~~i~~~~~~~~~~~~~~-~G----~~~~~i~iDE~~~~~~~~~~~~~~~~~~ 123 (384)
T PF03237_consen 72 ---ILPNGSRIQFRGADSPDSGDNI-RG----FEYDLIIIDEAAKVPDDAFSELIRRLRA 123 (384)
T ss_dssp ---EETTS-EEEEES-----SHHHH-HT----S--SEEEEESGGGSTTHHHHHHHHHHHH
T ss_pred ---EecCceEEEEeccccccccccc-cc----cccceeeeeecccCchHHHHHHHHhhhh
Confidence 0134556777764321 1111 21 4688999999876544333334433333
No 448
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=93.22 E-value=0.25 Score=47.42 Aligned_cols=17 Identities=29% Similarity=0.296 Sum_probs=14.8
Q ss_pred CCEEEEccCCCchhHHh
Q 013858 159 RDLLGCAETGSGKTAAF 175 (435)
Q Consensus 159 ~~vii~~~TGsGKT~~~ 175 (435)
.++++.||+|+|||+.+
T Consensus 52 ~~~ll~GppG~GKT~la 68 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLA 68 (328)
T ss_pred CcEEEECCCCccHHHHH
Confidence 46999999999999854
No 449
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.20 E-value=0.14 Score=48.68 Aligned_cols=54 Identities=20% Similarity=0.217 Sum_probs=35.6
Q ss_pred CcHHHHH-HHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhh
Q 013858 144 PTSIQAQ-AMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL 206 (435)
Q Consensus 144 p~~~Q~~-~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~l 206 (435)
+.+.|.. .+.++.+++++++||+||||||+. +.+++..+-. ..+++.+=-+.++
T Consensus 128 ~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~-lnall~~Ip~--------~~rivtIEdt~E~ 182 (312)
T COG0630 128 ISPEQAAYLWLAIEARKSIIICGGTASGKTTL-LNALLDFIPP--------EERIVTIEDTPEL 182 (312)
T ss_pred CCHHHHHHHHHHHHcCCcEEEECCCCCCHHHH-HHHHHHhCCc--------hhcEEEEeccccc
Confidence 3444444 445556888999999999999974 3455544322 2457777677666
No 450
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=93.13 E-value=0.57 Score=50.51 Aligned_cols=18 Identities=33% Similarity=0.237 Sum_probs=15.1
Q ss_pred CCCEEEEccCCCchhHHh
Q 013858 158 GRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~ 175 (435)
+..+++.||+|+|||..+
T Consensus 347 ~~~lll~GppG~GKT~lA 364 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLG 364 (775)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 446999999999999844
No 451
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=93.09 E-value=0.38 Score=52.18 Aligned_cols=32 Identities=22% Similarity=0.287 Sum_probs=22.0
Q ss_pred CcHHHHHHHHHHh----c--CCCEEEEccCCCchhHHh
Q 013858 144 PTSIQAQAMPVAL----S--GRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 144 p~~~Q~~~i~~~~----~--~~~vii~~~TGsGKT~~~ 175 (435)
|.--|..-+..++ . ..++++.||.|+|||+.+
T Consensus 188 ~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~ 225 (852)
T TIGR03345 188 PVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVV 225 (852)
T ss_pred cccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHH
Confidence 3333665565554 2 247999999999999854
No 452
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=93.06 E-value=0.15 Score=54.90 Aligned_cols=144 Identities=15% Similarity=0.115 Sum_probs=76.3
Q ss_pred CCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEE
Q 013858 120 IESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALV 199 (435)
Q Consensus 120 ~~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~li 199 (435)
...|++++....+...|+.+-...+..-+...=-.+.--+-|+.+||.|+|||+.+ -++..-..
T Consensus 261 ~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~a--raLa~~~s-------------- 324 (1080)
T KOG0732|consen 261 SVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMA--RALAAACS-------------- 324 (1080)
T ss_pred ccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHH--Hhhhhhhc--------------
Confidence 34688888777787777776442211111111001112356999999999999853 11111000
Q ss_pred EccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCC
Q 013858 200 LAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEAD 279 (435)
Q Consensus 200 l~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah 279 (435)
...+.+..++... .. . -.--|+.+++=++++... ..-...+.|.+||++
T Consensus 325 ---------~~~~kisffmrkg----------aD-------~----lskwvgEaERqlrllFee-A~k~qPSIIffdeId 373 (1080)
T KOG0732|consen 325 ---------RGNRKISFFMRKG----------AD-------C----LSKWVGEAERQLRLLFEE-AQKTQPSIIFFDEID 373 (1080)
T ss_pred ---------ccccccchhhhcC----------ch-------h----hccccCcHHHHHHHHHHH-HhccCceEEeccccc
Confidence 0011111111110 00 0 123466777766776652 234568899999999
Q ss_pred ccc--CCC--------CHHHHHHHHHhCCCCCeEEEEcccc
Q 013858 280 RML--DMG--------FEPQIREVMQNLPDKHQTLLFSATM 310 (435)
Q Consensus 280 ~~~--~~~--------~~~~i~~i~~~~~~~~q~i~~SATl 310 (435)
-+- ... ..+.+..++.-++..-|+++.+||.
T Consensus 374 GlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATn 414 (1080)
T KOG0732|consen 374 GLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATN 414 (1080)
T ss_pred cccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccC
Confidence 321 111 2234444555566788999999995
No 453
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=93.00 E-value=0.22 Score=49.50 Aligned_cols=52 Identities=17% Similarity=0.297 Sum_probs=47.5
Q ss_pred EEEEeCchHHHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcC
Q 013858 377 TIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVFSY 432 (435)
Q Consensus 377 ~lVF~~~~~~~~~l~~~L~~~----~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~ 432 (435)
.|||.+|++-|.++.++|... ++.+..+.|||....+++++.. ...|+|||+
T Consensus 266 ~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~----~p~IVVATP 321 (731)
T KOG0347|consen 266 ALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ----RPDIVVATP 321 (731)
T ss_pred eEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc----CCCEEEecc
Confidence 899999999999999999764 8999999999999999988887 678999996
No 454
>PRK08006 replicative DNA helicase; Provisional
Probab=92.97 E-value=1.3 Score=44.55 Aligned_cols=114 Identities=13% Similarity=0.120 Sum_probs=52.8
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcCCCceEEEEE-CCCCHH
Q 013858 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVV-GGTNIA 236 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~-g~~~~~ 236 (435)
|.=+||.|.+|.|||.- .+-+....... .+..+++...= --..|+..++-... .++....+. |.-...
T Consensus 224 G~LiiIaarPgmGKTaf-alnia~~~a~~------~g~~V~~fSlE-M~~~ql~~Rlla~~---~~v~~~~i~~~~l~~~ 292 (471)
T PRK08006 224 SDLIIVAARPSMGKTTF-AMNLCENAAML------QDKPVLIFSLE-MPGEQIMMRMLASL---SRVDQTRIRTGQLDDE 292 (471)
T ss_pred CcEEEEEeCCCCCHHHH-HHHHHHHHHHh------cCCeEEEEecc-CCHHHHHHHHHHHh---cCCCHHHhhcCCCCHH
Confidence 34489999999999954 34444443321 13446666532 22333433332211 123222222 332333
Q ss_pred HHHH------HHhCCCcEEEE-----CcHHHHHHHHcCCCCCCCceEEEEecCCccc
Q 013858 237 EQRS------ELRGGVSIVVA-----TPGRFLDHLQQGNTSLSRVSFVILDEADRML 282 (435)
Q Consensus 237 ~~~~------~~~~~~~I~v~-----T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~ 282 (435)
++.. .+.....+.|- |+..+...+.+-......+++||||=.|.+.
T Consensus 293 e~~~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~ 349 (471)
T PRK08006 293 DWARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMR 349 (471)
T ss_pred HHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHcc
Confidence 2211 12123445543 3444433332111112358999999999654
No 455
>PRK08506 replicative DNA helicase; Provisional
Probab=92.95 E-value=0.71 Score=46.60 Aligned_cols=48 Identities=19% Similarity=0.167 Sum_probs=28.1
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHH
Q 013858 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEV 214 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~ 214 (435)
|.-+++.|.+|.|||+.+ +-+....... +..+++++.= .-+.|+..++
T Consensus 192 G~LivIaarpg~GKT~fa-l~ia~~~~~~-------g~~V~~fSlE-Ms~~ql~~Rl 239 (472)
T PRK08506 192 GDLIIIAARPSMGKTTLC-LNMALKALNQ-------DKGVAFFSLE-MPAEQLMLRM 239 (472)
T ss_pred CceEEEEcCCCCChHHHH-HHHHHHHHhc-------CCcEEEEeCc-CCHHHHHHHH
Confidence 445899999999999643 4444443332 3456666532 3344444444
No 456
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=92.94 E-value=0.2 Score=47.47 Aligned_cols=39 Identities=23% Similarity=0.220 Sum_probs=26.3
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccC
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPT 203 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~ 203 (435)
.|+-+.|.||+|+|||+.+ +.++...... +..++++-.-
T Consensus 54 ~G~iteI~G~~GsGKTtLa-L~~~~~~~~~-------g~~v~yId~E 92 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLA-LHAIAEAQKA-------GGTAAFIDAE 92 (321)
T ss_pred CCeEEEEECCCCCCHHHHH-HHHHHHHHHc-------CCcEEEEccc
Confidence 4567999999999999754 4444443332 4667777544
No 457
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.88 E-value=0.18 Score=42.47 Aligned_cols=42 Identities=19% Similarity=0.356 Sum_probs=27.2
Q ss_pred CCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEccc
Q 013858 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSAT 309 (435)
Q Consensus 268 ~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT 309 (435)
.+..++|+||.-.-++......+..++..+....+.++++..
T Consensus 97 ~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh 138 (157)
T cd00267 97 LNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTH 138 (157)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 346899999999877766666666666655433234444443
No 458
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.86 E-value=0.4 Score=41.10 Aligned_cols=41 Identities=34% Similarity=0.407 Sum_probs=29.9
Q ss_pred CCCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEcc
Q 013858 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSA 308 (435)
Q Consensus 267 l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SA 308 (435)
..+-+++++||--.-+|......+..++..+.... .++++.
T Consensus 112 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~-tii~~s 152 (171)
T cd03228 112 LRDPPILILDEATSALDPETEALILEALRALAKGK-TVIVIA 152 (171)
T ss_pred hcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCC-EEEEEe
Confidence 45678999999988888777777878777765543 455543
No 459
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=92.78 E-value=0.68 Score=47.62 Aligned_cols=64 Identities=16% Similarity=0.221 Sum_probs=53.6
Q ss_pred CCCCcEEEEeCchHHHH----HHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCCC
Q 013858 372 HPFPLTIVFVERKTRCD----EVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYKLL 435 (435)
Q Consensus 372 ~~~~~~lVF~~~~~~~~----~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L~ 435 (435)
..+.++...++|.--|+ .+++.|...|+.|.++.|.+...+|.++++...+|+.+|+|.|=+|+
T Consensus 309 ~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALi 376 (677)
T COG1200 309 EAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALI 376 (677)
T ss_pred HcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhh
Confidence 34556899999965444 45555566699999999999999999999999999999999998875
No 460
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=92.75 E-value=1.2 Score=43.09 Aligned_cols=39 Identities=13% Similarity=0.173 Sum_probs=22.3
Q ss_pred CCCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEE
Q 013858 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLF 306 (435)
Q Consensus 267 l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~ 306 (435)
....++|||||||.+... -...+.+.+...++...+|+.
T Consensus 115 ~~~~~vviidea~~l~~~-~~~~Ll~~le~~~~~~~lIl~ 153 (355)
T TIGR02397 115 SGKYKVYIIDEVHMLSKS-AFNALLKTLEEPPEHVVFILA 153 (355)
T ss_pred cCCceEEEEeChhhcCHH-HHHHHHHHHhCCccceeEEEE
Confidence 456789999999977432 123344444444445544443
No 461
>PRK08840 replicative DNA helicase; Provisional
Probab=92.72 E-value=1.3 Score=44.62 Aligned_cols=25 Identities=16% Similarity=0.211 Sum_probs=17.3
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHH
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQH 182 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~ 182 (435)
.|.=+|+.|.+|.|||+-+ +-+...
T Consensus 216 ~g~LiviaarPg~GKTafa-lnia~~ 240 (464)
T PRK08840 216 GSDLIIVAARPSMGKTTFA-MNLCEN 240 (464)
T ss_pred CCceEEEEeCCCCchHHHH-HHHHHH
Confidence 3455899999999999643 433333
No 462
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=92.70 E-value=2.2 Score=39.59 Aligned_cols=32 Identities=16% Similarity=0.209 Sum_probs=21.5
Q ss_pred HHHHHHhc-C--CCEEEEccCCCchhHHhHHHHHHHH
Q 013858 150 QAMPVALS-G--RDLLGCAETGSGKTAAFTIPMIQHC 183 (435)
Q Consensus 150 ~~i~~~~~-~--~~vii~~~TGsGKT~~~~~~~l~~~ 183 (435)
..++.+.. + +++++.|++|+|||+ ++-++..+
T Consensus 100 ~~l~~l~~~~~~~~~~i~g~~g~GKtt--l~~~l~~~ 134 (270)
T TIGR02858 100 KLLPYLVRNNRVLNTLIISPPQCGKTT--LLRDLARI 134 (270)
T ss_pred HHHHHHHhCCCeeEEEEEcCCCCCHHH--HHHHHhCc
Confidence 33455543 3 579999999999998 44444443
No 463
>PRK04328 hypothetical protein; Provisional
Probab=92.64 E-value=0.26 Score=45.18 Aligned_cols=53 Identities=15% Similarity=0.181 Sum_probs=32.9
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHh
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~ 218 (435)
.|..+++.|++|+|||+..+-.+...+ .. |..++++. +.+-..++.+.++.++
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~-~~-------ge~~lyis-~ee~~~~i~~~~~~~g 74 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGL-QM-------GEPGVYVA-LEEHPVQVRRNMRQFG 74 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH-hc-------CCcEEEEE-eeCCHHHHHHHHHHcC
Confidence 456799999999999974432223322 21 45577776 3345555666666665
No 464
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=92.64 E-value=0.27 Score=44.27 Aligned_cols=54 Identities=20% Similarity=0.209 Sum_probs=32.0
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHh
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~ 218 (435)
.|..+++.|++|+|||+..+-.+...+... +..+++++- .+-..++.+.++.++
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~-------ge~vlyvs~-ee~~~~l~~~~~s~g 71 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNF-------GEKVLYVSF-EEPPEELIENMKSFG 71 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHH-------T--EEEEES-SS-HHHHHHHHHTTT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhc-------CCcEEEEEe-cCCHHHHHHHHHHcC
Confidence 456799999999999975433333333321 245777773 344466666666654
No 465
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=92.62 E-value=0.084 Score=54.51 Aligned_cols=50 Identities=24% Similarity=0.159 Sum_probs=39.3
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHh
Q 013858 159 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (435)
Q Consensus 159 ~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~ 218 (435)
.+++++||||||||..+++|-+... +.-++|+=|.-++........++++
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~----------~~S~VV~DpKGEl~~~Ta~~R~~~G 208 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFW----------EDSVVVHDIKLENYELTSGWREKQG 208 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhC----------CCCEEEEeCcHHHHHHHHHHHHHCC
Confidence 4799999999999999999987652 2347777788899887776666654
No 466
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=92.62 E-value=1.6 Score=42.51 Aligned_cols=92 Identities=21% Similarity=0.221 Sum_probs=49.4
Q ss_pred CCCCCCcccCCCHHHHHHHHHHcCceEEecCCCCCCCCCCCCcc------cC-CCCHHHHHH-HHHCCCCCCcHHHHHHH
Q 013858 81 NWKPSDRVLRFNPEQIEEVRLRLNVDVTVASGSVPAPAPIESFT------DM-CLHPSIMKD-IEFHEYTRPTSIQAQAM 152 (435)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~------~~-~l~~~l~~~-l~~~~~~~p~~~Q~~~i 152 (435)
+|.+.+.--=.++.++..+..+.+..|.+.... |..-..|- .. +.+++-... ..+-....++|.++..+
T Consensus 71 ~y~~~~~d~yvs~~~ir~~~lr~gd~v~g~~r~---~~~~e~~~~l~~v~~vng~~~~~~~~r~~f~~l~p~~p~~R~~l 147 (416)
T PRK09376 71 NYLPGPDDIYVSPSQIRRFNLRTGDTVEGKIRP---PKEGERYFALLKVETVNGEDPEKARNRPLFENLTPLYPNERLRL 147 (416)
T ss_pred CCCCCCCCeeeCHHHHHhcCCCCCCEEEEEeeC---CCCCCCccceEEEeeeCCCCHHHhcCCCCcccCCCCChhhcccc
Confidence 444443333466778888888888888765422 11111111 11 233333221 11222334445554444
Q ss_pred HH-------------Hh---cCCCEEEEccCCCchhHHh
Q 013858 153 PV-------------AL---SGRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 153 ~~-------------~~---~~~~vii~~~TGsGKT~~~ 175 (435)
.. +. .|+..+|.||.|+|||+.+
T Consensus 148 e~~~~~~~~~rvID~l~PIGkGQR~lIvgppGvGKTTLa 186 (416)
T PRK09376 148 ETGNPEDLSTRIIDLIAPIGKGQRGLIVAPPKAGKTVLL 186 (416)
T ss_pred cCCCCcccceeeeeeecccccCceEEEeCCCCCChhHHH
Confidence 32 22 6888999999999999743
No 467
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.55 E-value=0.77 Score=47.55 Aligned_cols=41 Identities=34% Similarity=0.402 Sum_probs=28.7
Q ss_pred CCCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEcc
Q 013858 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSA 308 (435)
Q Consensus 267 l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SA 308 (435)
+++-..+|+|||---+|..-+..+..-+..+..+ ++++.=|
T Consensus 620 lr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~-rTVlvIA 660 (716)
T KOG0058|consen 620 LRNPRVLILDEATSALDAESEYLVQEALDRLMQG-RTVLVIA 660 (716)
T ss_pred hcCCCEEEEechhhhcchhhHHHHHHHHHHhhcC-CeEEEEe
Confidence 5667889999998666766666777777776666 3555444
No 468
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=92.55 E-value=1.1 Score=42.01 Aligned_cols=56 Identities=16% Similarity=0.118 Sum_probs=34.3
Q ss_pred HHHHHHHHHHh-cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCC--CCCCCCeEEEEc
Q 013858 146 SIQAQAMPVAL-SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPV--GRGDGPLALVLA 201 (435)
Q Consensus 146 ~~Q~~~i~~~~-~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~--~~~~~~~~lil~ 201 (435)
..|-+.|+... .|..+++.|+.|.|||+..+.-.+....+..-+ ...+.+.++|+.
T Consensus 76 s~~P~lId~~fr~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvs 134 (402)
T COG3598 76 SNSPQLIDEFFRKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVS 134 (402)
T ss_pred ccChhhhhHHhhcCeeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEE
Confidence 34666676655 566788889999999987644444433333211 223345677776
No 469
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.50 E-value=0.47 Score=48.42 Aligned_cols=57 Identities=16% Similarity=0.220 Sum_probs=37.5
Q ss_pred CCCCCCCcccCCCCHHHHHHHHH---CCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHh
Q 013858 116 APAPIESFTDMCLHPSIMKDIEF---HEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 116 ~~~~~~~~~~~~l~~~l~~~l~~---~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~ 175 (435)
+.-|.-+|+++|=-+++.+.|+. ...+.|-.+.+..+ ---+-|++-||.|+|||+.+
T Consensus 426 ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi---~ppkGVLlyGPPGC~KT~lA 485 (693)
T KOG0730|consen 426 VEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGI---SPPKGVLLYGPPGCGKTLLA 485 (693)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcC---CCCceEEEECCCCcchHHHH
Confidence 45566789999877777777653 23334444433331 12367999999999999854
No 470
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=92.49 E-value=0.59 Score=46.86 Aligned_cols=40 Identities=18% Similarity=0.228 Sum_probs=24.3
Q ss_pred CCCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEc
Q 013858 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (435)
Q Consensus 267 l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~S 307 (435)
..+.++|||||+|++... ....+.+.+...+....+|+.+
T Consensus 119 ~~~~kvvIIdead~lt~~-~~n~LLk~lEep~~~~~~Il~t 158 (451)
T PRK06305 119 KSRYKIYIIDEVHMLTKE-AFNSLLKTLEEPPQHVKFFLAT 158 (451)
T ss_pred cCCCEEEEEecHHhhCHH-HHHHHHHHhhcCCCCceEEEEe
Confidence 356789999999987432 2334555555545555444433
No 471
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=92.44 E-value=0.99 Score=45.15 Aligned_cols=49 Identities=16% Similarity=0.224 Sum_probs=27.7
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHH
Q 013858 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEV 214 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~ 214 (435)
|.-++|.|++|+|||+. .+-+....... .+..+++++.- .-..++.+++
T Consensus 195 G~l~vi~g~pg~GKT~~-~l~~a~~~a~~------~g~~vl~~SlE-m~~~~i~~R~ 243 (434)
T TIGR00665 195 SDLIILAARPSMGKTAF-ALNIAENAAIK------EGKPVAFFSLE-MSAEQLAMRM 243 (434)
T ss_pred CeEEEEEeCCCCChHHH-HHHHHHHHHHh------CCCeEEEEeCc-CCHHHHHHHH
Confidence 44589999999999964 34444443321 13456666532 2333444444
No 472
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=92.43 E-value=9.1 Score=35.51 Aligned_cols=27 Identities=19% Similarity=0.255 Sum_probs=24.2
Q ss_pred chHHHHHHHHHHHhCCCcEEEecCCCC
Q 013858 383 RKTRCDEVSEALVAEGLHAVALHGGRN 409 (435)
Q Consensus 383 ~~~~~~~l~~~L~~~~~~v~~lh~~~~ 409 (435)
+..-|++|++.|++.++.+...|-++.
T Consensus 256 SV~iae~La~~L~~~~~~v~v~HRdl~ 282 (284)
T PF03668_consen 256 SVAIAERLAERLREKGYTVVVRHRDLE 282 (284)
T ss_pred HHHHHHHHHHHHHhcCCcceEEcCCCC
Confidence 478999999999999999999998875
No 473
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=92.37 E-value=0.083 Score=53.85 Aligned_cols=37 Identities=24% Similarity=0.316 Sum_probs=26.8
Q ss_pred CCCCCceEEEEecCCcccCCCCHHHHHHHHHhCCCCC
Q 013858 265 TSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKH 301 (435)
Q Consensus 265 ~~l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~ 301 (435)
+.+.+-+++|+|||---++.+....+...++.--++.
T Consensus 529 ilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~ 565 (604)
T COG4178 529 LLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDA 565 (604)
T ss_pred HHHcCCCEEEEecchhccChHHHHHHHHHHHhhCCCC
Confidence 3467889999999997778777777777666533333
No 474
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=92.33 E-value=4.5 Score=38.72 Aligned_cols=15 Identities=20% Similarity=0.158 Sum_probs=13.1
Q ss_pred CEEEEccCCCchhHH
Q 013858 160 DLLGCAETGSGKTAA 174 (435)
Q Consensus 160 ~vii~~~TGsGKT~~ 174 (435)
.+-++|+.|+|||+.
T Consensus 58 ~igi~G~~GaGKSTl 72 (332)
T PRK09435 58 RIGITGVPGVGKSTF 72 (332)
T ss_pred EEEEECCCCCCHHHH
Confidence 488999999999973
No 475
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=92.20 E-value=0.062 Score=46.35 Aligned_cols=44 Identities=25% Similarity=0.279 Sum_probs=29.6
Q ss_pred HHHhCCCcEEEECcHHHHHHHHcCCC--CCCCceEEEEecCCcccC
Q 013858 240 SELRGGVSIVVATPGRFLDHLQQGNT--SLSRVSFVILDEADRMLD 283 (435)
Q Consensus 240 ~~~~~~~~I~v~T~~~l~~~l~~~~~--~l~~~~~iIiDEah~~~~ 283 (435)
+.....++|+|+++..|++......+ ...+-.+|||||||.+.+
T Consensus 114 r~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 114 RELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp HHCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred HHhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 34456689999999998766443322 223557999999998754
No 476
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=92.17 E-value=0.32 Score=44.95 Aligned_cols=27 Identities=26% Similarity=0.251 Sum_probs=21.4
Q ss_pred HHHHHHHhcCCCEEEEccCCCchhHHh
Q 013858 149 AQAMPVALSGRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 149 ~~~i~~~~~~~~vii~~~TGsGKT~~~ 175 (435)
+.++..+..|+++++.|++|+|||..+
T Consensus 12 ~~~l~~l~~g~~vLL~G~~GtGKT~lA 38 (262)
T TIGR02640 12 SRALRYLKSGYPVHLRGPAGTGKTTLA 38 (262)
T ss_pred HHHHHHHhcCCeEEEEcCCCCCHHHHH
Confidence 344455667899999999999999854
No 477
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=92.16 E-value=0.91 Score=41.08 Aligned_cols=18 Identities=28% Similarity=0.359 Sum_probs=15.2
Q ss_pred CCCEEEEccCCCchhHHh
Q 013858 158 GRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~ 175 (435)
-+.++.-||.|+|||+.+
T Consensus 205 PKGvLmYGPPGTGKTlmA 222 (424)
T KOG0652|consen 205 PKGVLMYGPPGTGKTLMA 222 (424)
T ss_pred CCceEeeCCCCCcHHHHH
Confidence 367999999999999743
No 478
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=92.14 E-value=1.3 Score=44.61 Aligned_cols=75 Identities=16% Similarity=0.155 Sum_probs=52.8
Q ss_pred CCCcHHHHHHHHHHh------cC----CCEEEEccCCCchhHHhH-HHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHH
Q 013858 142 TRPTSIQAQAMPVAL------SG----RDLLGCAETGSGKTAAFT-IPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQI 210 (435)
Q Consensus 142 ~~p~~~Q~~~i~~~~------~~----~~vii~~~TGsGKT~~~~-~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~ 210 (435)
..+-|||+-.+-.++ .| +..+|..|-|-|||+.+. +-+...+... ..+..+.|++|+.+-+.+.
T Consensus 60 ~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~-----~~~~~~~i~A~s~~qa~~~ 134 (546)
T COG4626 60 ESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW-----RSGAGIYILAPSVEQAANS 134 (546)
T ss_pred cccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh-----hcCCcEEEEeccHHHHHHh
Confidence 356789999998887 12 247899999999997543 2222233222 3367799999999988888
Q ss_pred HHHHHHHhhcC
Q 013858 211 EKEVKALSRSL 221 (435)
Q Consensus 211 ~~~~~~~~~~~ 221 (435)
+..++.+....
T Consensus 135 F~~ar~mv~~~ 145 (546)
T COG4626 135 FNPARDMVKRD 145 (546)
T ss_pred hHHHHHHHHhC
Confidence 88887776554
No 479
>CHL00095 clpC Clp protease ATP binding subunit
Probab=92.13 E-value=1.5 Score=47.56 Aligned_cols=17 Identities=35% Similarity=0.372 Sum_probs=15.0
Q ss_pred CCEEEEccCCCchhHHh
Q 013858 159 RDLLGCAETGSGKTAAF 175 (435)
Q Consensus 159 ~~vii~~~TGsGKT~~~ 175 (435)
+++++.||+|+|||+.+
T Consensus 201 ~n~lL~G~pGvGKTal~ 217 (821)
T CHL00095 201 NNPILIGEPGVGKTAIA 217 (821)
T ss_pred CCeEEECCCCCCHHHHH
Confidence 47999999999999854
No 480
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=92.13 E-value=2.8 Score=43.70 Aligned_cols=60 Identities=13% Similarity=0.115 Sum_probs=45.6
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHc----CCCcEEEEcCCC
Q 013858 373 PFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRN----GSTNILVFSYKL 434 (435)
Q Consensus 373 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~----g~~~VLVaT~~L 434 (435)
..|++||.+++....+.+++.|+..---...+.|..+ .|...+++|+. |...||++|+.+
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sf 532 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGA 532 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCcc
Confidence 4567999999999999999999764223455566553 45668888887 479999999754
No 481
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=92.12 E-value=0.66 Score=46.52 Aligned_cols=53 Identities=21% Similarity=0.224 Sum_probs=33.8
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHh
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~ 218 (435)
.|.-+++.|++|+|||+.. +-+...+... +.+++|+..- +-..|+..++.+++
T Consensus 93 ~GsvilI~G~pGsGKTTL~-lq~a~~~a~~-------g~kvlYvs~E-Es~~qi~~ra~rlg 145 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLL-LQVACQLAKN-------QMKVLYVSGE-ESLQQIKMRAIRLG 145 (454)
T ss_pred CCeEEEEEcCCCCCHHHHH-HHHHHHHHhc-------CCcEEEEECc-CCHHHHHHHHHHcC
Confidence 4567999999999999743 3232333221 3568888754 45567766666654
No 482
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=92.04 E-value=0.14 Score=45.02 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=21.0
Q ss_pred hcCCCEEEEccCCCchhHHhHHHHHHHH
Q 013858 156 LSGRDLLGCAETGSGKTAAFTIPMIQHC 183 (435)
Q Consensus 156 ~~~~~vii~~~TGsGKT~~~~~~~l~~~ 183 (435)
..|..++|+||.|||||+ ++-++..+
T Consensus 26 ~~Gevv~iiGpSGSGKST--lLRclN~L 51 (240)
T COG1126 26 EKGEVVVIIGPSGSGKST--LLRCLNGL 51 (240)
T ss_pred cCCCEEEEECCCCCCHHH--HHHHHHCC
Confidence 367889999999999998 56666654
No 483
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=92.03 E-value=0.67 Score=41.62 Aligned_cols=45 Identities=20% Similarity=0.135 Sum_probs=25.5
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccC
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPT 203 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~ 203 (435)
.|.-+.|.|++|+|||..++ .+.......... .+.+..++++..-
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~-~ia~~~~~~~~~-~g~~~~v~yi~~e 62 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCL-QLAVEAQLPGEL-GGLEGKVVYIDTE 62 (226)
T ss_pred CCcEEEEeCCCCCChhHHHH-HHHHHhhccccc-CCCcceEEEEecC
Confidence 35679999999999997543 222222221111 1112567777754
No 484
>PRK08760 replicative DNA helicase; Provisional
Probab=92.00 E-value=1.1 Score=45.30 Aligned_cols=112 Identities=12% Similarity=0.124 Sum_probs=53.3
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcCCCceEEEE-ECCCCHH
Q 013858 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIV-VGGTNIA 236 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~-~g~~~~~ 236 (435)
|.-++|.|.+|.|||+.+ +-+....... .+..+++.+.- .-..|+..++-..... +....+ .|.....
T Consensus 229 G~LivIaarPg~GKTafa-l~iA~~~a~~------~g~~V~~fSlE-Ms~~ql~~Rl~a~~s~---i~~~~i~~g~l~~~ 297 (476)
T PRK08760 229 TDLIILAARPAMGKTTFA-LNIAEYAAIK------SKKGVAVFSME-MSASQLAMRLISSNGR---INAQRLRTGALEDE 297 (476)
T ss_pred CceEEEEeCCCCChhHHH-HHHHHHHHHh------cCCceEEEecc-CCHHHHHHHHHHhhCC---CcHHHHhcCCCCHH
Confidence 344899999999999643 4444443321 13446666532 3334555555433222 221111 2222222
Q ss_pred HHH------HHHhCCCcEEEE-----CcHHHHHHHHcCCCCCCCceEEEEecCCccc
Q 013858 237 EQR------SELRGGVSIVVA-----TPGRFLDHLQQGNTSLSRVSFVILDEADRML 282 (435)
Q Consensus 237 ~~~------~~~~~~~~I~v~-----T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~ 282 (435)
++. ..+. +..+.|- |++.+...+.+-. .-..+++||||=.+.+.
T Consensus 298 e~~~~~~a~~~l~-~~~l~I~d~~~~t~~~I~~~~r~l~-~~~~~~lVvIDyLql~~ 352 (476)
T PRK08760 298 DWARVTGAIKMLK-ETKIFIDDTPGVSPEVLRSKCRRLK-REHDLGLIVIDYLQLMS 352 (476)
T ss_pred HHHHHHHHHHHHh-cCCEEEeCCCCCCHHHHHHHHHHHH-HhcCCCEEEEecHHhcC
Confidence 211 1122 2345443 3444433332211 11347899999988653
No 485
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=91.99 E-value=0.95 Score=43.40 Aligned_cols=41 Identities=15% Similarity=0.246 Sum_probs=27.6
Q ss_pred CCCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEcc
Q 013858 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSA 308 (435)
Q Consensus 267 l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SA 308 (435)
....+++||||||++... -...+.+.+..-|+...+|+.+.
T Consensus 108 ~~~~kvviI~~a~~~~~~-a~NaLLK~LEEPp~~~~~Il~t~ 148 (329)
T PRK08058 108 ESNKKVYIIEHADKMTAS-AANSLLKFLEEPSGGTTAILLTE 148 (329)
T ss_pred ccCceEEEeehHhhhCHH-HHHHHHHHhcCCCCCceEEEEeC
Confidence 457899999999987432 34566666666666665555443
No 486
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=91.94 E-value=0.83 Score=39.38 Aligned_cols=41 Identities=27% Similarity=0.326 Sum_probs=28.0
Q ss_pred CCCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEcc
Q 013858 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSA 308 (435)
Q Consensus 267 l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SA 308 (435)
+.+-+++|+||.-.-++......+..++..+.... .++++.
T Consensus 114 ~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~-tii~~s 154 (178)
T cd03247 114 LQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDK-TLIWIT 154 (178)
T ss_pred hcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCC-EEEEEe
Confidence 55678999999997777766666767766654444 444433
No 487
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.92 E-value=0.62 Score=47.11 Aligned_cols=58 Identities=19% Similarity=0.334 Sum_probs=54.2
Q ss_pred CcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcC
Q 013858 375 PLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSY 432 (435)
Q Consensus 375 ~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~ 432 (435)
+.+||.+++++-+.+.+..|+..|+.+..++++.+..++..++.....|+.+|+++|+
T Consensus 52 ~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TP 109 (470)
T TIGR00614 52 GITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTP 109 (470)
T ss_pred CcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 3589999999999999999999999999999999999999999999999999999996
No 488
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=91.88 E-value=0.7 Score=50.16 Aligned_cols=15 Identities=33% Similarity=0.430 Sum_probs=13.5
Q ss_pred EEEEccCCCchhHHh
Q 013858 161 LLGCAETGSGKTAAF 175 (435)
Q Consensus 161 vii~~~TGsGKT~~~ 175 (435)
++++||||+|||..+
T Consensus 599 ~lf~Gp~GvGKT~lA 613 (852)
T TIGR03345 599 FLLVGPSGVGKTETA 613 (852)
T ss_pred EEEECCCCCCHHHHH
Confidence 799999999999854
No 489
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=91.88 E-value=0.44 Score=53.37 Aligned_cols=60 Identities=15% Similarity=0.184 Sum_probs=51.2
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhC----CCc---EEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCC
Q 013858 374 FPLTIVFVERKTRCDEVSEALVAE----GLH---AVALHGGRNQSDRESALRDFRNGSTNILVFSYK 433 (435)
Q Consensus 374 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~---v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~ 433 (435)
+.++||.+++++-|.++++.++.. ++. +..+||+++..+|...++.+++|..+|||+|+-
T Consensus 121 g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~ 187 (1171)
T TIGR01054 121 GKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTM 187 (1171)
T ss_pred CCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHH
Confidence 356999999999999999888764 333 346899999999999999999999999999974
No 490
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=91.81 E-value=0.5 Score=40.95 Aligned_cols=45 Identities=24% Similarity=0.406 Sum_probs=30.2
Q ss_pred CCCCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEcccc
Q 013858 266 SLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATM 310 (435)
Q Consensus 266 ~l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SATl 310 (435)
.+.+-+++++||.-.-+|......+..++..+...-..++++..-
T Consensus 119 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~ 163 (182)
T cd03215 119 LARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSE 163 (182)
T ss_pred HccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 356778999999998788766677777766653322355555443
No 491
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=91.79 E-value=0.45 Score=40.89 Aligned_cols=43 Identities=21% Similarity=0.268 Sum_probs=29.1
Q ss_pred CCCCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEcc
Q 013858 266 SLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSA 308 (435)
Q Consensus 266 ~l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SA 308 (435)
.+.+-+++++||.-.-++......+..++..+......++++.
T Consensus 111 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~s 153 (173)
T cd03246 111 LYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIA 153 (173)
T ss_pred HhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 3567789999999988887767777777766543223444443
No 492
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=91.67 E-value=0.79 Score=41.95 Aligned_cols=19 Identities=32% Similarity=0.218 Sum_probs=16.8
Q ss_pred hcCCCEEEEccCCCchhHH
Q 013858 156 LSGRDLLGCAETGSGKTAA 174 (435)
Q Consensus 156 ~~~~~vii~~~TGsGKT~~ 174 (435)
-+|+.++|.|+.|+|||+.
T Consensus 14 ~~Gqr~~I~G~~G~GKTTL 32 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTL 32 (249)
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3788999999999999973
No 493
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.59 E-value=0.57 Score=45.85 Aligned_cols=70 Identities=19% Similarity=0.246 Sum_probs=37.5
Q ss_pred HHHHHHHHcCCCCCCCceEEEEecCCcccCC--------CCHHHHHHHHHh----CCCCCeEEEEccc-ccHHHHHHHHH
Q 013858 254 GRFLDHLQQGNTSLSRVSFVILDEADRMLDM--------GFEPQIREVMQN----LPDKHQTLLFSAT-MPVEIEALAQE 320 (435)
Q Consensus 254 ~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~--------~~~~~i~~i~~~----~~~~~q~i~~SAT-l~~~~~~~~~~ 320 (435)
+++++.+.+-. .....++|+|||+|.++.. ........++.. ..++-+++++.|| .|.++.+-+++
T Consensus 231 eK~vralf~vA-r~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~R 309 (428)
T KOG0740|consen 231 EKLVRALFKVA-RSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAARR 309 (428)
T ss_pred HHHHHHHHHHH-HhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHHHH
Confidence 44444443311 2345788889999976531 112222333322 2234478889999 46666665555
Q ss_pred HcCC
Q 013858 321 YLTD 324 (435)
Q Consensus 321 ~~~~ 324 (435)
.+..
T Consensus 310 rf~k 313 (428)
T KOG0740|consen 310 RFVK 313 (428)
T ss_pred Hhhc
Confidence 4443
No 494
>PRK10689 transcription-repair coupling factor; Provisional
Probab=91.55 E-value=0.8 Score=51.22 Aligned_cols=60 Identities=15% Similarity=0.158 Sum_probs=53.2
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCC
Q 013858 374 FPLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYK 433 (435)
Q Consensus 374 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~ 433 (435)
+.+++|.|+++.-|.++++.+++. ++.+..++|..+..++..+++.+++|..+|+|+|.-
T Consensus 649 g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~ 712 (1147)
T PRK10689 649 HKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHK 712 (1147)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHH
Confidence 346999999999999999988753 467889999999999999999999999999999964
No 495
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=91.47 E-value=0.9 Score=45.38 Aligned_cols=41 Identities=12% Similarity=0.252 Sum_probs=25.3
Q ss_pred ceEEEEecCCcccCCC-------CHHHHHHHHHh---CCCCCeEEEEcccc
Q 013858 270 VSFVILDEADRMLDMG-------FEPQIREVMQN---LPDKHQTLLFSATM 310 (435)
Q Consensus 270 ~~~iIiDEah~~~~~~-------~~~~i~~i~~~---~~~~~q~i~~SATl 310 (435)
-..|.|||.|.+...- ....+..++.. +.++--+|++-||=
T Consensus 397 PcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATN 447 (752)
T KOG0734|consen 397 PCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATN 447 (752)
T ss_pred CeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccC
Confidence 4678899999765421 22344444444 34455689999994
No 496
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=91.34 E-value=0.16 Score=53.12 Aligned_cols=49 Identities=24% Similarity=0.216 Sum_probs=36.2
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHH
Q 013858 159 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (435)
Q Consensus 159 ~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~ 217 (435)
.+++++||||||||..+++|-+... +..++|+=|.-++........++.
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~----------~gS~VV~DpKGE~~~~Ta~~R~~~ 188 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTF----------KGSVIALDVKGELFELTSRARKAS 188 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcC----------CCCEEEEeCCchHHHHHHHHHHhC
Confidence 4799999999999999999976642 234777778888876555544443
No 497
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=91.28 E-value=0.21 Score=51.94 Aligned_cols=42 Identities=29% Similarity=0.398 Sum_probs=27.7
Q ss_pred CCCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEcc
Q 013858 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSA 308 (435)
Q Consensus 267 l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SA 308 (435)
+++-+++++||+---+|......+.+.+..+.+++-+|+.|=
T Consensus 485 l~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH 526 (571)
T TIGR02203 485 LKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAH 526 (571)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEeh
Confidence 456678899998877776666667666666555544455443
No 498
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=91.28 E-value=0.14 Score=47.64 Aligned_cols=19 Identities=37% Similarity=0.573 Sum_probs=16.6
Q ss_pred hcCCCEEEEccCCCchhHH
Q 013858 156 LSGRDLLGCAETGSGKTAA 174 (435)
Q Consensus 156 ~~~~~vii~~~TGsGKT~~ 174 (435)
..++.++++||+|+|||..
T Consensus 31 ~~~~pvLl~G~~GtGKT~l 49 (272)
T PF12775_consen 31 SNGRPVLLVGPSGTGKTSL 49 (272)
T ss_dssp HCTEEEEEESSTTSSHHHH
T ss_pred HcCCcEEEECCCCCchhHH
Confidence 3677899999999999974
No 499
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=91.26 E-value=0.38 Score=53.95 Aligned_cols=58 Identities=22% Similarity=0.311 Sum_probs=44.6
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHH
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~ 217 (435)
.+.+++|.|..|||||.+...-++..++..++ -.-..+||++.|+..+..+..++..-
T Consensus 15 ~~~~~lveASAGSGKT~vL~~r~lrlLl~~~~---~~v~~ILvvTFT~aAa~Emk~RI~~~ 72 (1139)
T COG1074 15 PGQSVLVEASAGTGKTFVLAERVLRLLLEGGP---LDVDEILVVTFTKAAAAEMKERIRDR 72 (1139)
T ss_pred CCCcEEEEEcCCCCchhHHHHHHHHHHhhcCC---CChhHeeeeeccHHHHHHHHHHHHHH
Confidence 56789999999999999876666666666421 12357999999999999998888543
No 500
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=91.22 E-value=2.2 Score=40.89 Aligned_cols=45 Identities=24% Similarity=0.325 Sum_probs=31.8
Q ss_pred CCceEEEEecCCcccCCC--CHHHHHHHHHhCCCCCeEEEEcccccH
Q 013858 268 SRVSFVILDEADRMLDMG--FEPQIREVMQNLPDKHQTLLFSATMPV 312 (435)
Q Consensus 268 ~~~~~iIiDEah~~~~~~--~~~~i~~i~~~~~~~~q~i~~SATl~~ 312 (435)
...-+||+|-|+.+-+++ ..+.+.++...++.+.=.|++|+++++
T Consensus 114 d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e 160 (438)
T KOG2543|consen 114 DQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCE 160 (438)
T ss_pred CceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccH
Confidence 456689999999887765 445555555555555557888999854
Done!