Query 013858
Match_columns 435
No_of_seqs 334 out of 2811
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 18:25:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013858.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013858hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 1.5E-51 5.1E-56 409.2 41.4 309 115-434 50-360 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 8.6E-48 3E-52 380.7 37.5 311 115-434 9-336 (417)
3 2j0s_A ATP-dependent RNA helic 100.0 7.4E-47 2.5E-51 373.3 33.0 302 118-434 34-336 (410)
4 3eiq_A Eukaryotic initiation f 100.0 2.1E-45 7.3E-50 363.1 32.9 303 117-434 36-340 (414)
5 1s2m_A Putative ATP-dependent 100.0 1.3E-44 4.4E-49 356.0 36.2 300 119-434 19-318 (400)
6 1xti_A Probable ATP-dependent 100.0 2.4E-44 8.1E-49 352.9 36.2 300 121-434 8-310 (391)
7 3fht_A ATP-dependent RNA helic 100.0 4E-44 1.4E-48 353.6 33.4 302 116-434 20-326 (412)
8 3pey_A ATP-dependent RNA helic 100.0 1.7E-43 5.9E-48 346.9 32.7 297 119-434 3-303 (395)
9 1fuu_A Yeast initiation factor 100.0 9.9E-45 3.4E-49 355.8 23.3 304 115-434 15-319 (394)
10 1hv8_A Putative ATP-dependent 100.0 8.6E-43 2.9E-47 338.5 35.9 292 121-434 6-298 (367)
11 3fmp_B ATP-dependent RNA helic 100.0 7.3E-45 2.5E-49 366.2 19.6 300 118-434 89-393 (479)
12 3sqw_A ATP-dependent RNA helic 100.0 7.8E-43 2.7E-47 359.0 30.9 302 128-434 28-351 (579)
13 3i5x_A ATP-dependent RNA helic 100.0 2.6E-42 8.8E-47 354.5 32.1 302 128-434 79-402 (563)
14 3fe2_A Probable ATP-dependent 100.0 3.3E-41 1.1E-45 308.7 27.3 238 91-333 3-240 (242)
15 2z0m_A 337AA long hypothetical 100.0 2.5E-40 8.7E-45 317.5 32.0 276 128-434 1-276 (337)
16 3fho_A ATP-dependent RNA helic 100.0 5.2E-42 1.8E-46 347.0 17.9 323 90-434 91-417 (508)
17 2v1x_A ATP-dependent DNA helic 100.0 3.1E-39 1E-43 330.3 30.4 285 124-434 24-327 (591)
18 1oyw_A RECQ helicase, ATP-depe 100.0 1.3E-38 4.3E-43 322.4 28.8 283 121-434 2-296 (523)
19 3l9o_A ATP-dependent RNA helic 100.0 6.5E-39 2.2E-43 347.5 25.0 286 121-434 162-540 (1108)
20 2va8_A SSO2462, SKI2-type heli 100.0 5.7E-38 1.9E-42 330.6 28.8 288 121-434 8-348 (715)
21 3iuy_A Probable ATP-dependent 100.0 2.8E-38 9.5E-43 286.7 22.0 215 113-329 11-227 (228)
22 2zj8_A DNA helicase, putative 100.0 7.1E-38 2.4E-42 329.9 27.5 284 122-434 2-330 (720)
23 1wrb_A DJVLGB; RNA helicase, D 100.0 5.3E-38 1.8E-42 289.4 21.7 224 119-343 21-252 (253)
24 3ber_A Probable ATP-dependent 100.0 3.3E-37 1.1E-41 283.1 25.7 208 118-331 40-248 (249)
25 1vec_A ATP-dependent RNA helic 100.0 4.5E-37 1.6E-41 274.2 25.8 203 121-328 3-205 (206)
26 2p6r_A Afuhel308 helicase; pro 100.0 1.9E-38 6.5E-43 333.3 18.1 283 122-434 2-332 (702)
27 2oxc_A Probable ATP-dependent 100.0 2.5E-37 8.4E-42 280.7 22.6 210 115-330 18-228 (230)
28 3fmo_B ATP-dependent RNA helic 100.0 1.4E-37 4.9E-42 292.9 21.2 208 117-332 88-299 (300)
29 3oiy_A Reverse gyrase helicase 100.0 1.4E-37 4.7E-42 307.3 21.7 268 132-434 10-311 (414)
30 3bor_A Human initiation factor 100.0 2.7E-37 9.2E-42 281.8 21.4 211 115-331 24-235 (237)
31 2pl3_A Probable ATP-dependent 100.0 3E-36 1E-40 274.7 26.2 213 117-332 21-234 (236)
32 1q0u_A Bstdead; DEAD protein, 100.0 2.7E-37 9.2E-42 278.4 19.1 208 120-332 3-213 (219)
33 1qde_A EIF4A, translation init 100.0 1.5E-36 5.2E-41 274.4 22.8 211 115-332 8-218 (224)
34 2gxq_A Heat resistant RNA depe 100.0 3.9E-36 1.3E-40 268.3 24.1 205 122-331 2-206 (207)
35 3dkp_A Probable ATP-dependent 100.0 1.8E-36 6.2E-41 277.8 20.3 230 95-333 3-243 (245)
36 3ly5_A ATP-dependent RNA helic 100.0 7.1E-36 2.4E-40 276.3 22.7 203 122-326 53-258 (262)
37 4a2p_A RIG-I, retinoic acid in 100.0 4.9E-36 1.7E-40 307.2 22.8 169 139-311 3-177 (556)
38 2ykg_A Probable ATP-dependent 100.0 2.6E-36 8.9E-41 317.5 19.8 174 134-311 4-184 (696)
39 1t6n_A Probable ATP-dependent 100.0 1.3E-35 4.5E-40 267.5 21.6 206 119-329 12-219 (220)
40 2xgj_A ATP-dependent RNA helic 100.0 8.1E-35 2.8E-39 313.0 31.0 267 139-434 83-442 (1010)
41 3tbk_A RIG-I helicase domain; 100.0 9.3E-35 3.2E-39 297.5 27.9 167 142-312 3-176 (555)
42 4a4z_A Antiviral helicase SKI2 100.0 9.7E-35 3.3E-39 312.3 26.2 262 143-434 39-435 (997)
43 4a2q_A RIG-I, retinoic acid in 100.0 1.5E-34 5.2E-39 307.5 25.1 170 138-311 243-418 (797)
44 4ddu_A Reverse gyrase; topoiso 100.0 1.2E-34 4E-39 314.2 22.0 261 138-434 74-368 (1104)
45 4f92_B U5 small nuclear ribonu 100.0 1.9E-33 6.3E-38 314.9 29.3 292 128-435 911-1250(1724)
46 1wp9_A ATP-dependent RNA helic 100.0 7.1E-33 2.4E-37 278.4 30.0 277 143-434 9-429 (494)
47 1tf5_A Preprotein translocase 100.0 3.2E-34 1.1E-38 294.3 20.0 274 138-434 79-490 (844)
48 1gku_B Reverse gyrase, TOP-RG; 100.0 1.1E-34 3.7E-39 314.5 13.7 260 137-434 52-333 (1054)
49 4a2w_A RIG-I, retinoic acid in 100.0 1.3E-33 4.5E-38 303.6 21.8 171 137-311 242-418 (936)
50 2fsf_A Preprotein translocase 100.0 4.6E-33 1.6E-37 284.9 22.9 273 139-434 71-499 (853)
51 4gl2_A Interferon-induced heli 100.0 5.4E-34 1.8E-38 300.0 16.1 167 142-312 6-193 (699)
52 2eyq_A TRCF, transcription-rep 100.0 6.7E-32 2.3E-36 294.4 32.8 275 127-434 587-874 (1151)
53 2xau_A PRE-mRNA-splicing facto 100.0 4E-33 1.4E-37 292.8 21.2 292 118-434 69-379 (773)
54 4f92_B U5 small nuclear ribonu 100.0 7.2E-33 2.5E-37 310.2 24.4 285 139-434 75-414 (1724)
55 1gm5_A RECG; helicase, replica 100.0 1.4E-32 4.9E-37 287.0 19.9 273 130-434 356-649 (780)
56 1nkt_A Preprotein translocase 100.0 2.5E-31 8.7E-36 272.4 28.5 274 138-434 107-518 (922)
57 2oca_A DAR protein, ATP-depend 100.0 8.4E-32 2.9E-36 273.0 15.0 267 142-434 112-408 (510)
58 2whx_A Serine protease/ntpase/ 100.0 1.7E-32 5.9E-37 281.3 4.4 256 126-434 155-411 (618)
59 2jlq_A Serine protease subunit 100.0 5.9E-31 2E-35 261.9 10.4 242 140-434 1-244 (451)
60 2fwr_A DNA repair protein RAD2 100.0 2.2E-29 7.6E-34 252.8 16.9 246 142-434 92-404 (472)
61 3o8b_A HCV NS3 protease/helica 100.0 3.6E-30 1.2E-34 262.1 10.5 231 143-434 217-449 (666)
62 2wv9_A Flavivirin protease NS2 100.0 1.6E-30 5.6E-35 268.2 5.7 248 135-434 202-466 (673)
63 2v6i_A RNA helicase; membrane, 100.0 1.3E-28 4.5E-33 243.4 17.3 226 157-434 1-227 (431)
64 3h1t_A Type I site-specific re 100.0 3.8E-28 1.3E-32 250.4 19.7 272 142-434 177-509 (590)
65 2z83_A Helicase/nucleoside tri 100.0 2.7E-29 9.4E-34 250.3 8.0 228 151-434 14-246 (459)
66 1yks_A Genome polyprotein [con 100.0 2.2E-28 7.6E-33 242.3 11.3 229 154-434 4-233 (440)
67 3rc3_A ATP-dependent RNA helic 99.9 9.1E-27 3.1E-31 239.7 14.8 230 153-434 150-382 (677)
68 1z63_A Helicase of the SNF2/RA 99.9 9.2E-25 3.1E-29 220.7 25.2 264 142-434 36-404 (500)
69 2w00_A HSDR, R.ECOR124I; ATP-b 99.9 1.2E-24 4E-29 233.0 22.2 276 142-435 270-660 (1038)
70 3dmq_A RNA polymerase-associat 99.9 2.2E-25 7.5E-30 240.1 16.1 272 142-434 152-566 (968)
71 3b6e_A Interferon-induced heli 99.9 2.4E-25 8.2E-30 199.4 10.5 167 139-309 29-216 (216)
72 3llm_A ATP-dependent RNA helic 99.9 1.5E-24 5.2E-29 196.9 14.0 184 129-326 47-232 (235)
73 3mwy_W Chromo domain-containin 99.9 2E-23 7E-28 221.5 22.1 325 81-433 181-634 (800)
74 2ipc_A Preprotein translocase 99.9 2.9E-22 9.9E-27 205.0 29.0 131 138-282 75-215 (997)
75 1z3i_X Similar to RAD54-like; 99.9 1.1E-21 3.7E-26 203.3 30.3 159 143-310 55-230 (644)
76 1rif_A DAR protein, DNA helica 99.9 3E-23 1E-27 193.8 10.3 156 142-315 112-267 (282)
77 3jux_A Protein translocase sub 99.9 7.4E-21 2.5E-25 191.4 27.5 268 142-434 74-532 (822)
78 2fz4_A DNA repair protein RAD2 99.8 1E-19 3.6E-24 164.9 15.7 139 142-313 92-231 (237)
79 2vl7_A XPD; helicase, unknown 99.8 9.4E-18 3.2E-22 170.2 15.9 127 139-282 4-188 (540)
80 1c4o_A DNA nucleotide excision 99.7 2E-16 6.7E-21 163.9 23.1 120 300-434 380-499 (664)
81 2d7d_A Uvrabc system protein B 99.7 6.3E-16 2.2E-20 160.0 21.4 121 299-434 385-505 (661)
82 3crv_A XPD/RAD3 related DNA he 99.6 8.4E-16 2.9E-20 156.4 13.5 129 143-283 3-187 (551)
83 4a15_A XPD helicase, ATP-depen 99.6 3.4E-14 1.2E-18 145.8 21.8 82 143-232 3-88 (620)
84 2p6n_A ATP-dependent RNA helic 99.4 3.4E-13 1.2E-17 117.6 10.1 106 319-434 9-114 (191)
85 1t5i_A C_terminal domain of A 99.4 3.9E-12 1.3E-16 109.0 13.5 89 337-434 3-91 (172)
86 2hjv_A ATP-dependent RNA helic 99.4 3.8E-12 1.3E-16 108.1 12.7 90 336-434 6-95 (163)
87 2rb4_A ATP-dependent RNA helic 99.3 7.8E-12 2.7E-16 107.5 12.5 89 337-434 5-94 (175)
88 2jgn_A DBX, DDX3, ATP-dependen 99.3 5E-12 1.7E-16 109.7 10.9 93 334-434 14-106 (185)
89 1fuk_A Eukaryotic initiation f 99.3 9.4E-12 3.2E-16 105.9 12.2 87 339-434 3-90 (165)
90 3eaq_A Heat resistant RNA depe 99.2 3.4E-11 1.2E-15 106.8 11.0 86 340-434 6-91 (212)
91 3i32_A Heat resistant RNA depe 99.2 4.3E-11 1.5E-15 111.5 11.2 87 339-434 2-88 (300)
92 2yjt_D ATP-dependent RNA helic 98.7 9.5E-12 3.3E-16 106.4 0.0 87 339-434 3-90 (170)
93 1w36_D RECD, exodeoxyribonucle 99.0 1.7E-09 5.7E-14 110.9 11.5 144 145-307 151-296 (608)
94 4b3f_X DNA-binding protein smu 98.5 2.9E-07 9.8E-12 95.3 9.6 67 143-217 189-256 (646)
95 3e1s_A Exodeoxyribonuclease V, 98.5 1.1E-06 3.7E-11 89.2 12.5 126 142-307 188-313 (574)
96 1z5z_A Helicase of the SNF2/RA 98.4 7E-07 2.4E-11 81.8 10.1 81 347-434 92-175 (271)
97 3upu_A ATP-dependent DNA helic 98.4 1.3E-06 4.4E-11 86.6 11.7 136 137-307 19-162 (459)
98 2gk6_A Regulator of nonsense t 98.4 4.2E-06 1.4E-10 86.1 14.7 70 141-217 178-247 (624)
99 3lfu_A DNA helicase II; SF1 he 98.3 3E-05 1E-09 80.2 20.1 71 142-218 8-78 (647)
100 2xzl_A ATP-dependent helicase 98.3 8.6E-06 2.9E-10 85.8 15.5 70 141-217 358-427 (802)
101 2wjy_A Regulator of nonsense t 98.3 8.3E-06 2.9E-10 85.8 14.6 70 141-217 354-423 (800)
102 2o0j_A Terminase, DNA packagin 97.7 0.00034 1.2E-08 66.9 11.9 74 143-222 163-236 (385)
103 2b8t_A Thymidine kinase; deoxy 97.5 0.0001 3.5E-09 65.0 5.5 91 157-281 11-101 (223)
104 3vkw_A Replicase large subunit 97.5 0.0003 1E-08 68.1 9.2 105 160-307 163-267 (446)
105 3ec2_A DNA replication protein 97.3 0.00054 1.8E-08 58.2 7.8 31 145-175 16-55 (180)
106 3cpe_A Terminase, DNA packagin 97.3 0.0018 6.1E-08 66.0 12.5 74 143-222 163-236 (592)
107 2orv_A Thymidine kinase; TP4A 97.3 0.00084 2.9E-08 59.0 8.5 40 157-204 18-57 (234)
108 2j9r_A Thymidine kinase; TK1, 97.3 0.00038 1.3E-08 60.5 6.1 39 158-204 28-66 (214)
109 2orw_A Thymidine kinase; TMTK, 97.2 0.00016 5.6E-09 61.9 3.7 39 157-203 2-40 (184)
110 3kl4_A SRP54, signal recogniti 97.2 0.0017 5.8E-08 63.0 11.0 132 159-322 98-235 (433)
111 1xx6_A Thymidine kinase; NESG, 97.1 0.00025 8.5E-09 61.0 3.5 39 157-203 7-45 (191)
112 2kjq_A DNAA-related protein; s 97.0 0.00031 1.1E-08 57.8 3.3 18 157-174 35-52 (149)
113 3te6_A Regulatory protein SIR3 97.0 0.0072 2.5E-07 56.1 12.7 26 158-184 45-70 (318)
114 3e2i_A Thymidine kinase; Zn-bi 96.9 0.00098 3.4E-08 57.8 5.3 40 157-204 27-66 (219)
115 2zpa_A Uncharacterized protein 96.7 0.0041 1.4E-07 63.3 8.9 112 143-310 175-288 (671)
116 3dm5_A SRP54, signal recogniti 96.6 0.0098 3.4E-07 57.7 10.6 131 160-322 102-236 (443)
117 1l8q_A Chromosomal replication 96.6 0.006 2.1E-07 57.0 8.8 18 158-175 37-54 (324)
118 1w4r_A Thymidine kinase; type 96.6 0.0044 1.5E-07 53.0 6.7 38 158-203 20-57 (195)
119 3n70_A Transport activator; si 96.5 0.0095 3.3E-07 48.4 8.5 20 156-175 22-41 (145)
120 1a5t_A Delta prime, HOLB; zinc 96.5 0.014 4.7E-07 54.8 10.5 32 144-175 3-41 (334)
121 2chg_A Replication factor C sm 96.5 0.032 1.1E-06 48.2 12.1 41 268-309 101-141 (226)
122 2v1u_A Cell division control p 96.4 0.012 4.2E-07 56.0 10.1 19 157-175 43-61 (387)
123 1pjr_A PCRA; DNA repair, DNA r 96.4 0.0088 3E-07 62.4 9.2 71 142-218 10-80 (724)
124 1uaa_A REP helicase, protein ( 96.4 0.0057 2E-07 63.4 7.6 70 143-218 2-71 (673)
125 1d2n_A N-ethylmaleimide-sensit 96.3 0.022 7.7E-07 51.5 10.6 17 159-175 65-81 (272)
126 3u61_B DNA polymerase accessor 96.2 0.008 2.7E-07 56.1 7.2 42 268-309 104-145 (324)
127 2z4s_A Chromosomal replication 96.2 0.015 5.1E-07 56.8 9.2 43 269-311 194-238 (440)
128 2w58_A DNAI, primosome compone 96.2 0.028 9.6E-07 48.3 9.9 17 159-175 55-71 (202)
129 2p65_A Hypothetical protein PF 96.1 0.017 5.9E-07 48.5 8.3 18 158-175 43-60 (187)
130 1fnn_A CDC6P, cell division co 96.1 0.0094 3.2E-07 57.0 7.3 16 160-175 46-61 (389)
131 2qgz_A Helicase loader, putati 96.1 0.018 6.1E-07 53.4 8.9 18 158-175 152-169 (308)
132 3h4m_A Proteasome-activating n 96.0 0.017 5.9E-07 52.6 8.3 53 120-175 13-68 (285)
133 1jbk_A CLPB protein; beta barr 96.0 0.017 5.7E-07 48.8 7.7 18 158-175 43-60 (195)
134 3syl_A Protein CBBX; photosynt 96.0 0.016 5.6E-07 53.5 8.1 17 159-175 68-84 (309)
135 3u4q_A ATP-dependent helicase/ 96.0 0.01 3.5E-07 65.8 7.7 70 143-216 10-79 (1232)
136 1g5t_A COB(I)alamin adenosyltr 96.0 0.017 6E-07 49.3 7.5 52 267-318 118-171 (196)
137 3bos_A Putative DNA replicatio 96.0 0.006 2.1E-07 53.9 4.7 19 157-175 51-69 (242)
138 1sxj_D Activator 1 41 kDa subu 95.8 0.034 1.2E-06 52.2 9.3 41 268-309 132-172 (353)
139 1njg_A DNA polymerase III subu 95.7 0.1 3.5E-06 45.5 11.9 40 268-308 125-164 (250)
140 1sxj_E Activator 1 40 kDa subu 95.6 0.03 1E-06 52.8 8.4 43 267-310 132-174 (354)
141 3pfi_A Holliday junction ATP-d 95.5 0.041 1.4E-06 51.5 8.8 17 159-175 56-72 (338)
142 4b4t_J 26S protease regulatory 95.4 0.018 6.2E-07 55.0 5.8 54 119-175 143-199 (405)
143 1ls1_A Signal recognition part 95.4 0.082 2.8E-06 48.5 10.2 54 268-321 179-233 (295)
144 2qby_A CDC6 homolog 1, cell di 95.4 0.045 1.5E-06 51.9 8.7 18 158-175 45-62 (386)
145 2gno_A DNA polymerase III, gam 95.3 0.078 2.7E-06 48.9 9.5 40 267-307 80-119 (305)
146 2qz4_A Paraplegin; AAA+, SPG7, 95.2 0.12 4.1E-06 46.1 10.6 18 158-175 39-56 (262)
147 2qby_B CDC6 homolog 3, cell di 95.2 0.04 1.4E-06 52.5 7.6 17 159-175 46-62 (384)
148 2w0m_A SSO2452; RECA, SSPF, un 95.2 0.076 2.6E-06 46.4 8.9 19 157-175 22-40 (235)
149 1xwi_A SKD1 protein; VPS4B, AA 95.2 0.11 3.9E-06 48.2 10.5 50 120-175 8-62 (322)
150 3eie_A Vacuolar protein sortin 95.2 0.068 2.3E-06 49.7 8.9 50 120-175 14-68 (322)
151 3oiy_A Reverse gyrase helicase 95.1 0.061 2.1E-06 51.8 8.7 60 373-432 63-125 (414)
152 4b4t_H 26S protease regulatory 95.1 0.025 8.6E-07 54.9 5.7 54 119-175 204-260 (467)
153 1jr3_A DNA polymerase III subu 95.0 0.14 4.7E-06 48.4 10.9 40 267-307 117-156 (373)
154 3e70_C DPA, signal recognition 95.0 0.14 4.8E-06 47.7 10.6 54 269-322 211-265 (328)
155 1sxj_A Activator 1 95 kDa subu 95.0 0.069 2.4E-06 53.3 9.0 41 268-310 147-189 (516)
156 1hqc_A RUVB; extended AAA-ATPa 94.9 0.065 2.2E-06 49.7 8.1 18 158-175 38-55 (324)
157 1iqp_A RFCS; clamp loader, ext 94.9 0.11 3.9E-06 47.9 9.7 40 268-308 109-148 (327)
158 1vma_A Cell division protein F 94.9 0.45 1.5E-05 43.7 13.4 17 159-175 105-121 (306)
159 3pvs_A Replication-associated 94.8 0.053 1.8E-06 53.0 7.3 17 159-175 51-67 (447)
160 2px0_A Flagellar biosynthesis 94.7 0.2 6.8E-06 46.0 10.4 19 157-175 104-122 (296)
161 3vfd_A Spastin; ATPase, microt 94.6 0.17 5.7E-06 48.4 10.3 18 158-175 148-165 (389)
162 2qp9_X Vacuolar protein sortin 94.5 0.11 3.6E-06 49.2 8.4 17 159-175 85-101 (355)
163 1sxj_B Activator 1 37 kDa subu 94.5 0.15 5E-06 47.1 9.3 40 269-309 107-146 (323)
164 2r6a_A DNAB helicase, replicat 94.5 0.12 4.2E-06 50.5 9.1 50 157-214 202-251 (454)
165 1sxj_C Activator 1 40 kDa subu 94.4 0.35 1.2E-05 45.2 11.8 39 268-307 109-147 (340)
166 1gm5_A RECG; helicase, replica 94.3 0.13 4.5E-06 53.8 9.4 60 375-434 418-481 (780)
167 1w5s_A Origin recognition comp 94.3 0.042 1.4E-06 52.8 5.4 17 159-175 51-69 (412)
168 4b4t_K 26S protease regulatory 94.3 0.033 1.1E-06 53.8 4.5 54 119-175 167-223 (428)
169 3hu3_A Transitional endoplasmi 94.1 0.13 4.4E-06 50.8 8.3 41 270-310 298-348 (489)
170 4b4t_I 26S protease regulatory 93.8 0.046 1.6E-06 52.6 4.3 54 119-175 177-233 (437)
171 2ffh_A Protein (FFH); SRP54, s 93.8 0.38 1.3E-05 46.4 10.7 43 158-208 98-142 (425)
172 2q6t_A DNAB replication FORK h 93.7 0.12 4.2E-06 50.4 7.2 49 158-214 200-248 (444)
173 3co5_A Putative two-component 93.4 0.065 2.2E-06 43.2 4.0 21 155-175 24-44 (143)
174 2yhs_A FTSY, cell division pro 93.2 0.68 2.3E-05 45.4 11.5 34 159-200 294-327 (503)
175 4ddu_A Reverse gyrase; topoiso 93.1 0.36 1.2E-05 52.7 10.4 60 373-432 120-182 (1104)
176 1n0w_A DNA repair protein RAD5 93.1 0.21 7.3E-06 43.8 7.4 19 157-175 23-41 (243)
177 2fna_A Conserved hypothetical 93.0 2.6 8.8E-05 38.9 15.2 51 253-307 124-177 (357)
178 1j8m_F SRP54, signal recogniti 93.0 0.4 1.4E-05 43.9 9.1 54 268-321 179-235 (297)
179 2ehv_A Hypothetical protein PH 93.0 0.032 1.1E-06 49.5 1.7 19 157-175 29-47 (251)
180 2v3c_C SRP54, signal recogniti 92.9 0.19 6.7E-06 48.6 7.3 17 159-175 100-116 (432)
181 3m6a_A ATP-dependent protease 92.7 0.19 6.4E-06 50.4 7.0 26 157-184 107-132 (543)
182 2eyu_A Twitching motility prot 92.5 0.11 3.7E-06 46.8 4.6 28 155-184 22-49 (261)
183 3bh0_A DNAB-like replicative h 92.4 0.94 3.2E-05 41.8 11.0 51 157-216 67-117 (315)
184 1oyw_A RECQ helicase, ATP-depe 92.3 0.36 1.2E-05 48.1 8.4 58 375-432 66-123 (523)
185 2p6n_A ATP-dependent RNA helic 91.8 2.2 7.6E-05 35.9 11.9 72 194-276 54-129 (191)
186 2v1x_A ATP-dependent DNA helic 91.8 0.33 1.1E-05 49.2 7.7 59 374-432 84-144 (591)
187 2xxa_A Signal recognition part 91.8 1.3 4.4E-05 42.9 11.5 44 160-210 102-147 (433)
188 1p9r_A General secretion pathw 91.8 0.31 1E-05 47.0 6.9 35 148-184 155-191 (418)
189 3cf2_A TER ATPase, transitiona 91.7 0.15 5.1E-06 53.3 5.0 55 118-175 471-528 (806)
190 3b85_A Phosphate starvation-in 91.5 0.25 8.6E-06 42.7 5.5 37 145-183 9-45 (208)
191 2j37_W Signal recognition part 91.4 1.4 4.8E-05 43.5 11.3 43 160-210 103-147 (504)
192 3cmu_A Protein RECA, recombina 91.0 0.2 6.9E-06 57.3 5.5 59 152-221 1415-1479(2050)
193 3io5_A Recombination and repai 91.0 0.51 1.8E-05 43.4 7.2 50 160-218 30-79 (333)
194 4a1f_A DNAB helicase, replicat 90.8 0.21 7E-06 46.7 4.6 49 157-214 45-93 (338)
195 3jvv_A Twitching mobility prot 90.8 0.28 9.7E-06 46.2 5.6 24 157-182 122-145 (356)
196 1qvr_A CLPB protein; coiled co 90.8 0.73 2.5E-05 48.9 9.4 17 159-175 192-208 (854)
197 2dr3_A UPF0273 protein PH0284; 90.7 0.38 1.3E-05 42.2 6.1 52 157-217 22-73 (247)
198 3lda_A DNA repair protein RAD5 90.7 1.6 5.6E-05 41.6 10.8 25 151-175 166-195 (400)
199 3hr8_A Protein RECA; alpha and 90.5 0.36 1.2E-05 45.4 6.0 42 157-206 60-101 (356)
200 1t6n_A Probable ATP-dependent 90.4 0.96 3.3E-05 38.9 8.4 55 375-432 83-142 (220)
201 3fe2_A Probable ATP-dependent 90.4 1.5 5.2E-05 38.4 9.8 56 373-432 101-160 (242)
202 2hjv_A ATP-dependent RNA helic 90.3 1.8 6.1E-05 35.4 9.5 74 194-278 35-112 (163)
203 3crv_A XPD/RAD3 related DNA he 90.2 1.7 6E-05 43.4 11.2 67 353-431 378-444 (551)
204 1xp8_A RECA protein, recombina 90.1 0.74 2.5E-05 43.5 7.7 39 157-203 73-111 (366)
205 2rb4_A ATP-dependent RNA helic 90.0 2.4 8.3E-05 34.9 10.2 73 194-277 34-110 (175)
206 1kgd_A CASK, peripheral plasma 89.7 0.21 7.2E-06 41.9 3.3 18 157-174 4-21 (180)
207 2oap_1 GSPE-2, type II secreti 89.5 0.31 1.1E-05 48.3 4.9 45 134-182 237-282 (511)
208 1lvg_A Guanylate kinase, GMP k 89.5 0.24 8.3E-06 42.3 3.6 25 157-183 3-27 (198)
209 2gza_A Type IV secretion syste 89.4 0.23 7.8E-06 47.0 3.7 26 155-182 172-197 (361)
210 1ypw_A Transitional endoplasmi 89.3 1.1 3.8E-05 47.1 9.1 18 157-174 237-254 (806)
211 1r6b_X CLPA protein; AAA+, N-t 88.8 0.65 2.2E-05 48.5 7.0 18 158-175 207-224 (758)
212 1fuk_A Eukaryotic initiation f 88.8 2.5 8.6E-05 34.5 9.3 75 194-279 30-108 (165)
213 1e9r_A Conjugal transfer prote 88.6 0.42 1.4E-05 46.3 5.1 44 157-208 52-95 (437)
214 3hjh_A Transcription-repair-co 88.6 1.4 4.8E-05 43.2 8.7 51 157-218 13-63 (483)
215 2pl3_A Probable ATP-dependent 88.5 1.9 6.6E-05 37.4 9.0 55 373-432 96-154 (236)
216 4b4t_M 26S protease regulatory 88.4 0.35 1.2E-05 46.7 4.2 55 118-175 175-232 (434)
217 3cf0_A Transitional endoplasmi 88.3 0.51 1.7E-05 43.2 5.1 54 119-175 10-66 (301)
218 3eaq_A Heat resistant RNA depe 88.1 2.6 9E-05 36.1 9.4 71 194-275 31-105 (212)
219 2l8b_A Protein TRAI, DNA helic 88.1 0.38 1.3E-05 40.3 3.6 58 145-209 36-95 (189)
220 2oxc_A Probable ATP-dependent 88.1 1.2 4.1E-05 38.7 7.3 55 373-432 91-150 (230)
221 4ag6_A VIRB4 ATPase, type IV s 87.8 0.78 2.7E-05 43.7 6.3 42 157-206 34-75 (392)
222 2eyq_A TRCF, transcription-rep 87.7 1.4 4.9E-05 48.2 9.0 60 374-433 652-715 (1151)
223 3ber_A Probable ATP-dependent 87.6 4 0.00014 35.9 10.5 55 374-432 111-169 (249)
224 2zts_A Putative uncharacterize 87.6 0.59 2E-05 41.0 5.0 52 157-217 29-81 (251)
225 1qhx_A CPT, protein (chloramph 87.3 0.26 8.8E-06 41.0 2.3 18 158-175 3-20 (178)
226 2bjv_A PSP operon transcriptio 87.3 0.44 1.5E-05 42.6 4.0 19 157-175 28-46 (265)
227 2pt7_A CAG-ALFA; ATPase, prote 87.3 0.28 9.7E-06 45.7 2.7 26 155-182 168-193 (330)
228 1z6g_A Guanylate kinase; struc 87.3 0.43 1.5E-05 41.4 3.8 25 156-182 21-45 (218)
229 3vaa_A Shikimate kinase, SK; s 87.2 0.42 1.4E-05 40.7 3.6 19 157-175 24-42 (199)
230 3trf_A Shikimate kinase, SK; a 87.2 0.27 9.1E-06 41.2 2.3 18 158-175 5-22 (185)
231 2l82_A Designed protein OR32; 87.2 3.4 0.00011 30.7 7.8 48 377-424 5-52 (162)
232 3a00_A Guanylate kinase, GMP k 87.1 0.41 1.4E-05 40.3 3.5 24 158-183 1-24 (186)
233 3tr0_A Guanylate kinase, GMP k 87.1 0.4 1.4E-05 40.8 3.4 24 157-182 6-29 (205)
234 3hws_A ATP-dependent CLP prote 87.1 0.74 2.5E-05 43.3 5.6 19 157-175 50-68 (363)
235 1w36_B RECB, exodeoxyribonucle 87.1 0.87 3E-05 50.2 6.8 58 160-217 18-79 (1180)
236 2ewv_A Twitching motility prot 87.0 0.33 1.1E-05 46.1 3.1 27 156-184 134-160 (372)
237 1rj9_A FTSY, signal recognitio 86.8 0.66 2.3E-05 42.6 4.9 36 158-201 102-137 (304)
238 1t5i_A C_terminal domain of A 86.8 6.6 0.00023 32.2 10.8 75 194-279 31-109 (172)
239 3tau_A Guanylate kinase, GMP k 86.8 0.41 1.4E-05 41.2 3.3 18 157-174 7-24 (208)
240 3iij_A Coilin-interacting nucl 86.6 0.24 8.2E-06 41.4 1.7 19 157-175 10-28 (180)
241 2qor_A Guanylate kinase; phosp 86.5 0.29 9.9E-06 41.9 2.2 20 156-175 10-29 (204)
242 3nbx_X ATPase RAVA; AAA+ ATPas 86.5 0.81 2.8E-05 45.2 5.6 28 148-175 31-58 (500)
243 3ney_A 55 kDa erythrocyte memb 86.5 0.47 1.6E-05 40.5 3.5 18 157-174 18-35 (197)
244 1kag_A SKI, shikimate kinase I 86.3 0.51 1.7E-05 38.9 3.6 23 158-182 4-26 (173)
245 2j41_A Guanylate kinase; GMP, 86.2 0.4 1.4E-05 40.8 3.0 19 156-174 4-22 (207)
246 1zp6_A Hypothetical protein AT 86.2 0.29 9.9E-06 41.2 2.0 19 156-174 7-25 (191)
247 3a8t_A Adenylate isopentenyltr 86.2 0.28 9.7E-06 45.6 2.1 18 158-175 40-57 (339)
248 3lw7_A Adenylate kinase relate 86.0 0.32 1.1E-05 40.0 2.2 16 160-175 3-18 (179)
249 3b9q_A Chloroplast SRP recepto 86.0 0.66 2.2E-05 42.6 4.4 36 158-201 100-135 (302)
250 3cmw_A Protein RECA, recombina 85.9 1.1 3.6E-05 50.8 6.7 89 158-282 1431-1522(1706)
251 1ofh_A ATP-dependent HSL prote 85.8 3.5 0.00012 37.2 9.4 18 158-175 50-67 (310)
252 3b9p_A CG5977-PA, isoform A; A 85.7 1.1 3.9E-05 40.6 6.0 18 158-175 54-71 (297)
253 2qmh_A HPR kinase/phosphorylas 85.5 0.34 1.2E-05 41.4 2.0 19 157-175 33-51 (205)
254 4f4c_A Multidrug resistance pr 85.5 0.32 1.1E-05 54.2 2.3 25 157-183 1104-1128(1321)
255 3i5x_A ATP-dependent RNA helic 85.4 11 0.00036 37.5 13.5 78 194-279 339-420 (563)
256 2r44_A Uncharacterized protein 85.4 0.37 1.3E-05 44.7 2.5 24 152-175 40-63 (331)
257 1znw_A Guanylate kinase, GMP k 85.4 0.56 1.9E-05 40.2 3.5 28 154-183 16-43 (207)
258 1ex7_A Guanylate kinase; subst 85.3 0.42 1.4E-05 40.4 2.6 16 159-174 2-17 (186)
259 1s96_A Guanylate kinase, GMP k 85.3 0.56 1.9E-05 40.8 3.4 25 156-182 14-38 (219)
260 2ze6_A Isopentenyl transferase 85.3 0.35 1.2E-05 43.1 2.2 16 160-175 3-18 (253)
261 1u0j_A DNA replication protein 85.3 1.5 5E-05 39.3 6.2 43 130-175 73-121 (267)
262 4b4t_L 26S protease subunit RP 85.2 0.62 2.1E-05 45.0 4.0 18 158-175 215-232 (437)
263 2x8a_A Nuclear valosin-contain 85.1 0.23 7.8E-06 45.0 0.8 52 120-174 6-60 (274)
264 1xti_A Probable ATP-dependent 85.1 2.5 8.7E-05 39.6 8.3 56 374-432 76-136 (391)
265 1y63_A LMAJ004144AAA protein; 85.1 0.4 1.4E-05 40.3 2.4 19 157-175 9-27 (184)
266 3exa_A TRNA delta(2)-isopenten 85.0 0.35 1.2E-05 44.5 2.0 17 159-175 4-20 (322)
267 2gxq_A Heat resistant RNA depe 84.7 2.6 9.1E-05 35.5 7.5 56 373-432 71-128 (207)
268 4a74_A DNA repair and recombin 84.6 0.8 2.7E-05 39.6 4.2 18 157-174 24-41 (231)
269 1tue_A Replication protein E1; 84.5 1.4 4.8E-05 37.8 5.4 44 130-175 28-75 (212)
270 3c8u_A Fructokinase; YP_612366 84.4 0.59 2E-05 40.1 3.2 27 157-185 21-47 (208)
271 3foz_A TRNA delta(2)-isopenten 84.4 0.43 1.5E-05 43.8 2.3 16 160-175 12-27 (316)
272 2jgn_A DBX, DDX3, ATP-dependen 84.3 2.5 8.6E-05 35.4 7.0 71 194-275 46-120 (185)
273 4eun_A Thermoresistant glucoki 84.2 0.71 2.4E-05 39.3 3.6 24 157-182 28-51 (200)
274 1kht_A Adenylate kinase; phosp 84.1 0.72 2.5E-05 38.6 3.6 18 158-175 3-20 (192)
275 1vec_A ATP-dependent RNA helic 84.1 2.8 9.5E-05 35.4 7.4 56 373-432 70-130 (206)
276 4gp7_A Metallophosphoesterase; 83.9 0.4 1.4E-05 39.8 1.8 19 157-175 8-26 (171)
277 1q57_A DNA primase/helicase; d 83.9 3.1 0.0001 41.0 8.5 50 157-214 241-290 (503)
278 1ojl_A Transcriptional regulat 83.9 0.7 2.4E-05 42.4 3.6 19 157-175 24-42 (304)
279 2i4i_A ATP-dependent RNA helic 83.9 6.2 0.00021 37.3 10.6 71 194-275 276-350 (417)
280 2yvu_A Probable adenylyl-sulfa 83.8 1 3.6E-05 37.6 4.4 19 157-175 12-30 (186)
281 2og2_A Putative signal recogni 83.7 0.92 3.1E-05 42.7 4.4 36 158-201 157-192 (359)
282 3kb2_A SPBC2 prophage-derived 83.5 0.48 1.6E-05 38.9 2.1 16 160-175 3-18 (173)
283 1f2t_A RAD50 ABC-ATPase; DNA d 83.4 0.8 2.7E-05 37.0 3.4 23 160-184 25-47 (149)
284 3kta_A Chromosome segregation 83.4 0.7 2.4E-05 38.5 3.1 24 160-185 28-51 (182)
285 1ly1_A Polynucleotide kinase; 83.2 0.51 1.7E-05 39.1 2.2 16 160-175 4-19 (181)
286 3nwj_A ATSK2; P loop, shikimat 83.1 0.98 3.3E-05 40.1 4.1 24 157-182 47-70 (250)
287 2i3b_A HCR-ntpase, human cance 83.0 0.96 3.3E-05 38.3 3.9 41 267-310 103-145 (189)
288 3iuy_A Probable ATP-dependent 82.7 2.5 8.5E-05 36.5 6.6 56 373-432 93-151 (228)
289 3nwn_A Kinesin-like protein KI 82.7 0.9 3.1E-05 42.7 3.8 25 151-175 96-122 (359)
290 3sqw_A ATP-dependent RNA helic 82.7 18 0.00063 36.0 13.9 79 194-280 288-370 (579)
291 1ye8_A Protein THEP1, hypothet 82.7 0.9 3.1E-05 38.0 3.5 23 160-184 2-24 (178)
292 3cm0_A Adenylate kinase; ATP-b 82.5 0.42 1.4E-05 40.0 1.4 19 157-175 3-21 (186)
293 2v9p_A Replication protein E1; 82.5 0.75 2.6E-05 42.2 3.1 26 157-184 125-150 (305)
294 2db3_A ATP-dependent RNA helic 82.5 3.7 0.00013 39.5 8.3 56 373-432 128-187 (434)
295 1knq_A Gluconate kinase; ALFA/ 82.5 0.77 2.6E-05 37.9 3.0 18 158-175 8-25 (175)
296 3gk5_A Uncharacterized rhodane 82.4 1.2 4.2E-05 33.6 3.9 38 373-410 54-91 (108)
297 2z43_A DNA repair and recombin 82.4 2.1 7.3E-05 39.5 6.3 65 151-217 95-165 (324)
298 3uie_A Adenylyl-sulfate kinase 82.3 0.82 2.8E-05 38.9 3.2 19 157-175 24-42 (200)
299 1lv7_A FTSH; alpha/beta domain 82.3 0.55 1.9E-05 41.7 2.1 18 158-175 45-62 (257)
300 2cvh_A DNA repair and recombin 82.2 1.2 4.2E-05 38.1 4.4 19 157-175 19-37 (220)
301 1wrb_A DJVLGB; RNA helicase, D 82.2 3.1 0.0001 36.6 7.1 55 374-432 100-158 (253)
302 1bg2_A Kinesin; motor protein, 82.1 1 3.4E-05 41.7 3.9 25 151-175 69-95 (325)
303 3d8b_A Fidgetin-like protein 1 82.1 1.7 5.9E-05 40.7 5.6 18 158-175 117-134 (357)
304 1nij_A Hypothetical protein YJ 82.0 0.92 3.1E-05 41.9 3.6 37 269-308 151-187 (318)
305 1tf7_A KAIC; homohexamer, hexa 82.0 2.9 9.8E-05 41.5 7.5 49 157-214 280-328 (525)
306 3asz_A Uridine kinase; cytidin 81.9 0.84 2.9E-05 39.0 3.2 26 157-184 5-30 (211)
307 3crm_A TRNA delta(2)-isopenten 81.9 0.61 2.1E-05 43.1 2.3 16 160-175 7-22 (323)
308 3tqc_A Pantothenate kinase; bi 81.8 2.5 8.4E-05 39.0 6.4 24 160-185 94-117 (321)
309 3ly5_A ATP-dependent RNA helic 81.7 9.3 0.00032 33.7 10.2 55 374-432 126-184 (262)
310 3uk6_A RUVB-like 2; hexameric 81.7 0.59 2E-05 43.9 2.2 18 158-175 70-87 (368)
311 2bwj_A Adenylate kinase 5; pho 81.6 0.69 2.3E-05 39.0 2.4 19 157-175 11-29 (199)
312 3dc4_A Kinesin-like protein NO 81.6 0.94 3.2E-05 42.3 3.5 25 151-175 86-112 (344)
313 3lnc_A Guanylate kinase, GMP k 81.5 0.65 2.2E-05 40.5 2.3 24 156-181 25-48 (231)
314 3d3q_A TRNA delta(2)-isopenten 81.5 0.61 2.1E-05 43.4 2.2 16 160-175 9-24 (340)
315 2c95_A Adenylate kinase 1; tra 81.3 0.72 2.5E-05 38.8 2.4 19 157-175 8-26 (196)
316 1nlf_A Regulatory protein REPA 81.3 2.6 8.8E-05 37.9 6.3 21 155-175 27-47 (279)
317 1xjc_A MOBB protein homolog; s 81.2 1.8 6E-05 35.9 4.7 15 160-174 6-20 (169)
318 3t61_A Gluconokinase; PSI-biol 81.2 0.66 2.2E-05 39.5 2.2 17 159-175 19-35 (202)
319 2vvg_A Kinesin-2; motor protei 81.0 1.2 3.9E-05 41.8 3.9 25 151-175 81-107 (350)
320 2h58_A Kinesin-like protein KI 80.9 1.2 4E-05 41.4 3.9 26 150-175 71-98 (330)
321 3b6u_A Kinesin-like protein KI 80.8 1.1 3.9E-05 42.1 3.8 25 151-175 93-119 (372)
322 2rhm_A Putative kinase; P-loop 80.8 0.61 2.1E-05 39.1 1.8 18 158-175 5-22 (193)
323 3tif_A Uncharacterized ABC tra 80.8 0.89 3E-05 40.0 2.9 23 157-181 30-52 (235)
324 1goj_A Kinesin, kinesin heavy 80.7 1.2 4E-05 41.9 3.8 25 151-175 72-98 (355)
325 2y65_A Kinesin, kinesin heavy 80.7 1.2 4.1E-05 41.9 3.9 25 151-175 76-102 (365)
326 1t5c_A CENP-E protein, centrom 80.6 1.2 4E-05 41.7 3.8 25 151-175 69-95 (349)
327 1htw_A HI0065; nucleotide-bind 80.6 0.81 2.8E-05 37.5 2.4 26 157-184 32-57 (158)
328 1gku_B Reverse gyrase, TOP-RG; 80.6 3.8 0.00013 44.5 8.3 57 374-432 99-163 (1054)
329 1v8k_A Kinesin-like protein KI 80.6 1.1 3.9E-05 42.7 3.7 25 151-175 146-172 (410)
330 2zfi_A Kinesin-like protein KI 80.5 1.2 4.1E-05 42.0 3.9 25 151-175 81-107 (366)
331 1m7g_A Adenylylsulfate kinase; 80.5 1.3 4.5E-05 37.9 3.9 29 146-175 14-42 (211)
332 2nr8_A Kinesin-like protein KI 80.4 1.2 4.2E-05 41.8 3.8 26 150-175 94-121 (358)
333 2zr9_A Protein RECA, recombina 80.3 1.8 6E-05 40.6 5.0 38 157-202 60-97 (349)
334 3t0q_A AGR253WP; kinesin, alph 80.3 1.1 3.9E-05 41.8 3.6 25 151-175 77-103 (349)
335 4a14_A Kinesin, kinesin-like p 80.2 1.3 4.3E-05 41.4 3.9 25 151-175 75-101 (344)
336 3lre_A Kinesin-like protein KI 80.2 1.2 4.2E-05 41.7 3.8 25 151-175 97-123 (355)
337 2bdt_A BH3686; alpha-beta prot 80.2 0.71 2.4E-05 38.7 2.0 16 159-174 3-18 (189)
338 3foj_A Uncharacterized protein 80.2 1.5 5E-05 32.5 3.6 37 373-409 55-91 (100)
339 3gbj_A KIF13B protein; kinesin 80.1 1.3 4.3E-05 41.6 3.8 25 151-175 84-110 (354)
340 4etp_A Kinesin-like protein KA 80.1 1.3 4.5E-05 42.3 4.0 25 151-175 132-158 (403)
341 1um8_A ATP-dependent CLP prote 80.1 0.83 2.9E-05 43.2 2.7 18 158-175 72-89 (376)
342 1tev_A UMP-CMP kinase; ploop, 80.1 0.66 2.2E-05 38.9 1.8 18 158-175 3-20 (196)
343 1cr0_A DNA primase/helicase; R 80.1 1.6 5.5E-05 39.6 4.6 19 157-175 34-52 (296)
344 1via_A Shikimate kinase; struc 79.9 0.86 2.9E-05 37.7 2.4 17 159-175 5-21 (175)
345 1zd8_A GTP:AMP phosphotransfer 79.8 0.79 2.7E-05 39.9 2.2 19 157-175 6-24 (227)
346 1x88_A Kinesin-like protein KI 79.8 1.2 4E-05 41.9 3.5 25 151-175 80-106 (359)
347 1zuh_A Shikimate kinase; alpha 79.8 0.89 3.1E-05 37.3 2.5 18 158-175 7-24 (168)
348 1v5w_A DMC1, meiotic recombina 79.8 2.6 8.8E-05 39.3 5.9 65 151-217 110-180 (343)
349 2v54_A DTMP kinase, thymidylat 79.6 1.2 4.1E-05 37.7 3.3 18 157-174 3-20 (204)
350 1zu4_A FTSY; GTPase, signal re 79.5 1.7 5.7E-05 40.2 4.4 18 158-175 105-122 (320)
351 3i32_A Heat resistant RNA depe 79.5 5.7 0.0002 36.1 8.0 75 194-279 28-106 (300)
352 1f9v_A Kinesin-like protein KA 79.5 1.2 4E-05 41.7 3.4 25 151-175 76-102 (347)
353 2r62_A Cell division protease 79.5 0.54 1.8E-05 42.0 1.1 18 158-175 44-61 (268)
354 1u94_A RECA protein, recombina 79.4 2 6.8E-05 40.3 5.0 38 157-202 62-99 (356)
355 1ixz_A ATP-dependent metallopr 79.4 1.1 3.8E-05 39.6 3.2 53 119-174 11-65 (254)
356 1pzn_A RAD51, DNA repair and r 79.4 1.5 5.1E-05 41.1 4.1 24 151-174 119-147 (349)
357 2iyv_A Shikimate kinase, SK; t 79.3 0.98 3.4E-05 37.6 2.6 17 159-175 3-19 (184)
358 1rz3_A Hypothetical protein rb 79.3 1.8 6.1E-05 36.8 4.3 17 159-175 23-39 (201)
359 1wv9_A Rhodanese homolog TT165 79.2 2.1 7E-05 31.3 4.1 35 375-409 54-88 (94)
360 2wbe_C Bipolar kinesin KRP-130 79.2 1.2 4.2E-05 42.0 3.5 25 151-175 92-118 (373)
361 3eme_A Rhodanese-like domain p 79.2 1.4 4.6E-05 32.9 3.1 37 373-409 55-91 (103)
362 1gvn_B Zeta; postsegregational 79.0 0.82 2.8E-05 41.6 2.2 17 159-175 34-50 (287)
363 2cbz_A Multidrug resistance-as 78.9 0.91 3.1E-05 39.9 2.4 24 157-182 30-53 (237)
364 2heh_A KIF2C protein; kinesin, 78.9 1.3 4.6E-05 41.9 3.6 25 151-175 126-152 (387)
365 3u06_A Protein claret segregat 78.8 1.5 5E-05 42.1 3.9 26 150-175 129-156 (412)
366 1qde_A EIF4A, translation init 78.8 2.1 7.3E-05 36.7 4.7 55 373-432 81-139 (224)
367 3cob_A Kinesin heavy chain-lik 78.7 1.2 4.1E-05 42.0 3.2 25 151-175 71-97 (369)
368 3qf7_A RAD50; ABC-ATPase, ATPa 78.7 1.2 4.3E-05 41.9 3.4 22 160-183 25-46 (365)
369 1aky_A Adenylate kinase; ATP:A 78.5 0.97 3.3E-05 39.0 2.4 18 158-175 4-21 (220)
370 3bor_A Human initiation factor 78.5 3.7 0.00013 35.7 6.3 57 373-432 97-157 (237)
371 1nks_A Adenylate kinase; therm 78.5 1.4 4.8E-05 36.7 3.4 16 160-175 3-18 (194)
372 3qks_A DNA double-strand break 78.5 1.4 4.9E-05 37.6 3.5 24 160-185 25-48 (203)
373 3t15_A Ribulose bisphosphate c 78.4 0.86 2.9E-05 41.5 2.1 17 159-175 37-53 (293)
374 2pez_A Bifunctional 3'-phospho 78.4 1.3 4.4E-05 36.7 3.1 25 157-183 4-28 (179)
375 4a2q_A RIG-I, retinoic acid in 78.4 6.2 0.00021 41.4 9.0 55 374-432 296-354 (797)
376 3eph_A TRNA isopentenyltransfe 78.4 0.89 3E-05 43.3 2.2 16 160-175 4-19 (409)
377 1e6c_A Shikimate kinase; phosp 78.3 1 3.5E-05 36.9 2.4 17 159-175 3-19 (173)
378 1in4_A RUVB, holliday junction 78.3 1.4 4.9E-05 40.9 3.6 23 159-183 52-74 (334)
379 3g5j_A Putative ATP/GTP bindin 78.3 2.7 9.2E-05 32.7 4.8 37 375-411 90-127 (134)
380 4fcw_A Chaperone protein CLPB; 78.3 1 3.5E-05 41.0 2.6 16 160-175 49-64 (311)
381 2jaq_A Deoxyguanosine kinase; 78.2 1.4 4.7E-05 37.2 3.2 21 160-182 2-22 (205)
382 1zak_A Adenylate kinase; ATP:A 78.1 1.1 3.7E-05 38.8 2.6 18 158-175 5-22 (222)
383 2r8r_A Sensor protein; KDPD, P 78.0 2.4 8.2E-05 36.9 4.7 28 157-185 4-32 (228)
384 2owm_A Nckin3-434, related to 78.0 1.6 5.4E-05 42.3 3.9 25 151-175 128-154 (443)
385 3fb4_A Adenylate kinase; psych 77.9 0.96 3.3E-05 38.8 2.2 16 160-175 2-17 (216)
386 3auy_A DNA double-strand break 77.7 1.4 4.6E-05 41.7 3.3 21 160-182 27-47 (371)
387 1sgw_A Putative ABC transporte 77.6 1.4 4.9E-05 38.0 3.2 23 157-181 34-56 (214)
388 3tbk_A RIG-I helicase domain; 77.4 4.3 0.00015 40.1 7.1 55 374-432 52-110 (555)
389 1qf9_A UMP/CMP kinase, protein 77.4 1 3.4E-05 37.7 2.1 16 160-175 8-23 (194)
390 2cdn_A Adenylate kinase; phosp 77.3 1.1 3.8E-05 37.9 2.4 17 159-175 21-37 (201)
391 2c9o_A RUVB-like 1; hexameric 77.3 0.98 3.4E-05 44.0 2.3 18 158-175 63-80 (456)
392 3bfn_A Kinesin-like protein KI 77.2 1.4 4.9E-05 41.7 3.3 23 153-175 92-116 (388)
393 3fht_A ATP-dependent RNA helic 77.2 9.2 0.00031 36.0 9.2 74 194-278 266-343 (412)
394 1cke_A CK, MSSA, protein (cyti 77.1 1.6 5.4E-05 37.7 3.4 17 159-175 6-22 (227)
395 2vli_A Antibiotic resistance p 77.1 0.9 3.1E-05 37.7 1.7 18 158-175 5-22 (183)
396 3gfo_A Cobalt import ATP-bindi 77.0 1.3 4.5E-05 39.9 2.9 24 157-182 33-56 (275)
397 1g8p_A Magnesium-chelatase 38 77.0 1.3 4.5E-05 41.1 3.0 18 158-175 45-62 (350)
398 4a2p_A RIG-I, retinoic acid in 77.0 5.8 0.0002 39.2 8.0 55 374-432 55-113 (556)
399 2wwf_A Thymidilate kinase, put 76.9 1.8 6E-05 36.9 3.6 24 157-182 9-32 (212)
400 3dl0_A Adenylate kinase; phosp 76.9 1.1 3.6E-05 38.6 2.2 16 160-175 2-17 (216)
401 2f1r_A Molybdopterin-guanine d 76.9 0.92 3.1E-05 37.7 1.7 24 160-185 4-27 (171)
402 2pcj_A ABC transporter, lipopr 76.8 1.4 4.7E-05 38.4 2.9 23 157-181 29-51 (224)
403 2plr_A DTMP kinase, probable t 76.8 1.4 4.9E-05 37.4 3.0 19 157-175 3-21 (213)
404 2pze_A Cystic fibrosis transme 76.7 1.4 4.8E-05 38.5 2.9 23 157-181 33-55 (229)
405 3bgw_A DNAB-like replicative h 76.7 2.3 7.7E-05 41.3 4.7 37 157-201 196-232 (444)
406 2ghi_A Transport protein; mult 76.5 1.4 4.9E-05 39.3 2.9 23 157-181 45-67 (260)
407 1iy2_A ATP-dependent metallopr 76.5 1.5 5.2E-05 39.4 3.2 22 159-182 74-95 (278)
408 2rep_A Kinesin-like protein KI 76.5 1.8 6E-05 40.9 3.6 25 151-175 107-133 (376)
409 2ff7_A Alpha-hemolysin translo 76.3 1.5 5E-05 38.9 2.9 24 157-182 34-57 (247)
410 1ukz_A Uridylate kinase; trans 76.2 1.2 3.9E-05 37.9 2.2 17 159-175 16-32 (203)
411 3pey_A ATP-dependent RNA helic 76.2 11 0.00037 35.1 9.3 76 194-280 243-322 (395)
412 2pt5_A Shikimate kinase, SK; a 75.9 1.2 4.1E-05 36.3 2.2 16 160-175 2-17 (168)
413 1wp9_A ATP-dependent RNA helic 75.8 5.3 0.00018 38.4 7.2 54 374-432 52-109 (494)
414 1ak2_A Adenylate kinase isoenz 75.8 1.9 6.4E-05 37.6 3.5 19 157-175 15-33 (233)
415 1g6h_A High-affinity branched- 75.7 1.5 5.2E-05 39.0 2.9 23 157-181 32-54 (257)
416 2z0h_A DTMP kinase, thymidylat 75.7 3.1 0.0001 34.8 4.8 20 161-182 3-22 (197)
417 1np6_A Molybdopterin-guanine d 75.7 3.2 0.00011 34.5 4.7 15 160-174 8-22 (174)
418 1jjv_A Dephospho-COA kinase; P 75.7 1.2 4.1E-05 37.9 2.2 16 160-175 4-19 (206)
419 2qt1_A Nicotinamide riboside k 75.7 1.2 4.2E-05 37.9 2.2 19 157-175 20-38 (207)
420 3aez_A Pantothenate kinase; tr 75.6 1.6 5.6E-05 40.1 3.2 26 158-185 90-115 (312)
421 4g1u_C Hemin import ATP-bindin 75.5 1.6 5.3E-05 39.2 2.9 23 157-181 36-58 (266)
422 1sky_E F1-ATPase, F1-ATP synth 75.5 2.7 9.2E-05 40.9 4.7 21 155-175 148-168 (473)
423 1nn5_A Similar to deoxythymidy 75.4 2.1 7.1E-05 36.5 3.6 19 157-175 8-26 (215)
424 2zu0_C Probable ATP-dependent 75.4 1.4 4.7E-05 39.6 2.5 24 157-182 45-68 (267)
425 2if2_A Dephospho-COA kinase; a 75.4 1.2 4.2E-05 37.7 2.1 16 160-175 3-18 (204)
426 1q0u_A Bstdead; DEAD protein, 75.2 2.4 8.2E-05 36.3 4.0 56 373-432 71-134 (219)
427 1ji0_A ABC transporter; ATP bi 75.2 1.6 5.6E-05 38.4 2.9 23 157-181 31-53 (240)
428 2bbw_A Adenylate kinase 4, AK4 75.2 1.7 5.7E-05 38.3 3.0 18 157-174 26-43 (246)
429 4anj_A Unconventional myosin-V 75.1 3.9 0.00013 44.0 6.3 97 87-185 64-170 (1052)
430 1fuu_A Yeast initiation factor 75.1 6.4 0.00022 36.8 7.3 55 373-432 88-146 (394)
431 1b0u_A Histidine permease; ABC 75.1 1.6 5.6E-05 39.0 2.9 23 157-181 31-53 (262)
432 2pbr_A DTMP kinase, thymidylat 75.0 1.3 4.4E-05 37.0 2.2 16 160-175 2-17 (195)
433 2ius_A DNA translocase FTSK; n 75.0 3.7 0.00013 40.5 5.7 19 157-175 166-184 (512)
434 3a4m_A L-seryl-tRNA(SEC) kinas 75.0 1.3 4.3E-05 39.6 2.2 17 159-175 5-21 (260)
435 1mv5_A LMRA, multidrug resista 74.9 1.4 4.8E-05 38.9 2.4 24 157-182 27-50 (243)
436 3hix_A ALR3790 protein; rhodan 74.8 2.8 9.7E-05 31.3 3.8 37 373-409 51-88 (106)
437 3hgt_A HDA1 complex subunit 3; 74.7 7.6 0.00026 35.7 7.3 56 349-411 107-162 (328)
438 1s2m_A Putative ATP-dependent 74.4 13 0.00045 34.8 9.4 73 194-277 258-334 (400)
439 4f4c_A Multidrug resistance pr 74.4 4.4 0.00015 45.1 6.7 39 267-305 570-608 (1321)
440 2yz2_A Putative ABC transporte 74.4 1.4 4.9E-05 39.4 2.4 23 157-181 32-54 (266)
441 2d7d_A Uvrabc system protein B 74.2 21 0.00073 36.4 11.4 77 194-281 445-525 (661)
442 3iwh_A Rhodanese-like domain p 74.2 2.3 7.7E-05 31.9 3.1 37 373-409 55-91 (103)
443 2ixe_A Antigen peptide transpo 74.2 1.8 6E-05 39.0 2.9 32 267-298 172-203 (271)
444 2olj_A Amino acid ABC transpor 74.2 1.8 6E-05 38.8 2.9 23 157-181 49-71 (263)
445 2d2e_A SUFC protein; ABC-ATPas 74.2 1.9 6.5E-05 38.2 3.1 24 157-182 28-51 (250)
446 2iut_A DNA translocase FTSK; n 74.1 3.7 0.00013 41.0 5.4 26 158-184 214-239 (574)
447 3nh6_A ATP-binding cassette SU 74.1 1.2 4.2E-05 40.8 1.9 24 157-182 79-102 (306)
448 1vpl_A ABC transporter, ATP-bi 74.0 1.8 6.2E-05 38.5 2.9 23 157-181 40-62 (256)
449 4e22_A Cytidylate kinase; P-lo 74.0 1.7 5.7E-05 38.6 2.7 18 157-174 26-43 (252)
450 1odf_A YGR205W, hypothetical 3 74.0 2.1 7.3E-05 38.8 3.5 16 160-175 33-48 (290)
451 3be4_A Adenylate kinase; malar 73.9 1.5 5E-05 37.8 2.3 18 158-175 5-22 (217)
452 1g8x_A Myosin II heavy chain f 73.9 5.1 0.00018 43.0 6.8 96 87-184 93-197 (1010)
453 1e4v_A Adenylate kinase; trans 73.8 1.4 4.8E-05 37.8 2.1 16 160-175 2-17 (214)
454 2qi9_C Vitamin B12 import ATP- 73.8 1.8 6.3E-05 38.3 2.9 17 157-173 25-41 (249)
455 3pxg_A Negative regulator of g 73.8 2 6.7E-05 42.0 3.4 18 158-175 201-218 (468)
456 1sq5_A Pantothenate kinase; P- 73.8 3 0.0001 38.2 4.4 25 158-184 80-104 (308)
457 2ihy_A ABC transporter, ATP-bi 73.7 1.8 6.3E-05 39.0 2.9 23 157-181 46-68 (279)
458 3k1j_A LON protease, ATP-depen 73.4 2.3 7.8E-05 43.1 3.9 30 153-184 55-84 (604)
459 2zan_A Vacuolar protein sortin 73.4 1.4 4.9E-05 42.7 2.2 18 158-175 167-184 (444)
460 2j0s_A ATP-dependent RNA helic 73.2 13 0.00045 34.9 9.1 73 194-277 276-352 (410)
461 2nq2_C Hypothetical ABC transp 72.9 1.9 6.7E-05 38.2 2.9 23 157-181 30-52 (253)
462 1uf9_A TT1252 protein; P-loop, 72.9 1.7 5.9E-05 36.6 2.4 16 160-175 10-25 (203)
463 3umf_A Adenylate kinase; rossm 72.8 1.6 5.6E-05 37.7 2.3 19 157-175 28-46 (217)
464 3f9v_A Minichromosome maintena 72.6 1.7 6E-05 43.9 2.7 15 160-174 329-343 (595)
465 2r2a_A Uncharacterized protein 72.5 2.4 8.1E-05 36.1 3.2 41 269-309 87-132 (199)
466 2p5t_B PEZT; postsegregational 72.5 1 3.5E-05 39.9 0.9 17 159-175 33-49 (253)
467 2xb4_A Adenylate kinase; ATP-b 72.4 1.6 5.5E-05 37.8 2.2 16 160-175 2-17 (223)
468 3sr0_A Adenylate kinase; phosp 72.4 1.9 6.4E-05 37.0 2.5 16 160-175 2-17 (206)
469 2jtq_A Phage shock protein E; 72.1 5.3 0.00018 28.3 4.6 36 373-409 40-76 (85)
470 4akg_A Glutathione S-transfera 72.0 4.1 0.00014 48.4 5.9 48 128-176 890-941 (2695)
471 3u4q_B ATP-dependent helicase/ 71.8 3.6 0.00012 45.2 5.2 59 345-406 316-375 (1166)
472 1g41_A Heat shock protein HSLU 71.8 1.9 6.5E-05 41.7 2.7 18 158-175 50-67 (444)
473 1gtv_A TMK, thymidylate kinase 71.7 1.4 4.7E-05 37.7 1.5 22 161-184 3-24 (214)
474 1vht_A Dephospho-COA kinase; s 71.6 1.7 5.9E-05 37.3 2.2 17 159-175 5-21 (218)
475 1yks_A Genome polyprotein [con 71.4 6.3 0.00022 38.0 6.4 70 194-275 177-246 (440)
476 2bbs_A Cystic fibrosis transme 71.1 1.9 6.3E-05 39.2 2.3 23 157-181 63-85 (290)
477 3tlx_A Adenylate kinase 2; str 71.0 1.8 6.2E-05 38.1 2.2 18 158-175 29-46 (243)
478 2grj_A Dephospho-COA kinase; T 70.9 1.9 6.4E-05 36.5 2.2 16 160-175 14-29 (192)
479 2i1q_A DNA repair and recombin 70.6 4.4 0.00015 37.2 4.9 25 151-175 86-115 (322)
480 2jeo_A Uridine-cytidine kinase 70.5 2.4 8.3E-05 37.2 2.9 26 157-184 24-49 (245)
481 4edh_A DTMP kinase, thymidylat 70.5 4.4 0.00015 34.8 4.5 20 156-175 4-23 (213)
482 1w9i_A Myosin II heavy chain; 70.4 7.1 0.00024 40.5 6.7 97 87-185 93-198 (770)
483 2onk_A Molybdate/tungstate ABC 70.3 2.5 8.5E-05 37.2 2.9 22 159-182 25-46 (240)
484 3b5x_A Lipid A export ATP-bind 70.2 2.5 8.7E-05 42.5 3.3 25 157-183 368-392 (582)
485 2fsx_A RV0390, COG0607: rhodan 70.2 4.6 0.00016 32.3 4.3 36 374-409 80-116 (148)
486 4eaq_A DTMP kinase, thymidylat 70.1 2.7 9.2E-05 36.6 3.1 26 157-184 25-50 (229)
487 4db1_A Myosin-7; S1DC, cardiac 70.1 7.1 0.00024 40.6 6.6 97 87-185 92-197 (783)
488 3vkg_A Dynein heavy chain, cyt 70.0 13 0.00045 44.9 9.5 54 128-184 873-930 (3245)
489 1gmx_A GLPE protein; transfera 69.8 3.1 0.00011 31.2 3.0 38 373-410 57-95 (108)
490 2fsf_A Preprotein translocase 69.7 7 0.00024 40.8 6.4 53 374-432 115-171 (853)
491 3fvq_A Fe(3+) IONS import ATP- 69.5 2.7 9.1E-05 39.5 3.0 24 157-182 29-52 (359)
492 2pjz_A Hypothetical protein ST 69.5 2.5 8.5E-05 37.8 2.7 32 268-299 145-176 (263)
493 3hjn_A DTMP kinase, thymidylat 69.3 9.3 0.00032 32.2 6.3 38 161-206 3-41 (197)
494 2z0m_A 337AA long hypothetical 69.2 9.1 0.00031 34.7 6.8 53 375-432 57-113 (337)
495 1ry6_A Internal kinesin; kines 69.2 3.1 0.00011 39.0 3.4 19 157-175 82-102 (360)
496 1w7j_A Myosin VA; motor protei 68.9 7.8 0.00027 40.4 6.7 95 87-185 76-182 (795)
497 1tf5_A Preprotein translocase 68.8 9 0.00031 40.0 7.0 53 374-432 124-180 (844)
498 4akg_A Glutathione S-transfera 68.7 2 6.8E-05 51.0 2.4 20 156-175 1265-1284(2695)
499 1c4o_A DNA nucleotide excision 68.7 44 0.0015 34.0 12.2 77 194-281 439-519 (664)
500 1hv8_A Putative ATP-dependent 68.6 16 0.00055 33.4 8.5 55 373-432 73-131 (367)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=1.5e-51 Score=409.18 Aligned_cols=309 Identities=40% Similarity=0.626 Sum_probs=284.7
Q ss_pred CCCCCCCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCC
Q 013858 115 PAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDG 194 (435)
Q Consensus 115 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~ 194 (435)
+.|.++.+|++++|++.+++.|..+||..|+|+|+++|+.++.|+|++++++||||||++|++|++.++..........+
T Consensus 50 ~~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~ 129 (434)
T 2db3_A 50 DVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGR 129 (434)
T ss_dssp SCCCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTC
T ss_pred CCCCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCC
Confidence 67889999999999999999999999999999999999999999999999999999999999999999887643334457
Q ss_pred CeEEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEE
Q 013858 195 PLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVI 274 (435)
Q Consensus 195 ~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iI 274 (435)
+++||++|||+||.|+++++++++... ++++..++||.....+...+..+++|+|+|||+|++++.+....+.++++||
T Consensus 130 ~~~lil~PtreLa~Q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lV 208 (434)
T 2db3_A 130 PQVVIVSPTRELAIQIFNEARKFAFES-YLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVV 208 (434)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHTTTS-SCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEE
T ss_pred ccEEEEecCHHHHHHHHHHHHHHhccC-CcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEE
Confidence 899999999999999999999998765 6889999999999888888888999999999999999988888899999999
Q ss_pred EecCCcccCCCCHHHHHHHHHhC--CCCCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEEEcChhhH
Q 013858 275 LDEADRMLDMGFEPQIREVMQNL--PDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEK 352 (435)
Q Consensus 275 iDEah~~~~~~~~~~i~~i~~~~--~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k 352 (435)
|||||++++++|...+..++..+ ++.+|+++||||+|..+..++..++.++..+.++........+.+.+..+....|
T Consensus 209 lDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k 288 (434)
T 2db3_A 209 LDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAK 288 (434)
T ss_dssp EETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCGGGH
T ss_pred EccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEEeCcHHH
Confidence 99999999999999999999875 5789999999999999999999999999999988877777889999999999999
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcC
Q 013858 353 VDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSY 432 (435)
Q Consensus 353 ~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~ 432 (435)
...+.+.+.+. . .++||||++++.|+.+++.|+..|+.+..+||++++.+|..+++.|++|+.+|||||+
T Consensus 289 ~~~l~~~l~~~---------~-~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~ 358 (434)
T 2db3_A 289 RSKLIEILSEQ---------A-DGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS 358 (434)
T ss_dssp HHHHHHHHHHC---------C-TTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG
T ss_pred HHHHHHHHHhC---------C-CCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch
Confidence 98888877552 1 2399999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 013858 433 KL 434 (435)
Q Consensus 433 ~L 434 (435)
++
T Consensus 359 v~ 360 (434)
T 2db3_A 359 VA 360 (434)
T ss_dssp GG
T ss_pred hh
Confidence 76
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=8.6e-48 Score=380.67 Aligned_cols=311 Identities=43% Similarity=0.705 Sum_probs=275.8
Q ss_pred CCCCCCCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCC-----
Q 013858 115 PAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPV----- 189 (435)
Q Consensus 115 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~----- 189 (435)
..|.++.+|+++++++.+.+.|..+||..|+++|.++|+.++.|+++++++|||+|||++|++|++..+......
T Consensus 9 ~~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~ 88 (417)
T 2i4i_A 9 NCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRA 88 (417)
T ss_dssp TCCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred cCCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhc
Confidence 678899999999999999999999999999999999999999999999999999999999999999887654311
Q ss_pred --------CCCCCCeEEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHH
Q 013858 190 --------GRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQ 261 (435)
Q Consensus 190 --------~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~ 261 (435)
....++++||++||++|+.|+++.+++++... ++++..++||.....+...+..+++|+|+||++|.+.+.
T Consensus 89 ~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~ 167 (417)
T 2i4i_A 89 MKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRS-RVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMME 167 (417)
T ss_dssp HHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTS-SCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHH
T ss_pred cccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcC-CceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHH
Confidence 12234789999999999999999999998765 689999999999888888888889999999999999998
Q ss_pred cCCCCCCCceEEEEecCCcccCCCCHHHHHHHHHh--CCC--CCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCCCC
Q 013858 262 QGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQN--LPD--KHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPT 337 (435)
Q Consensus 262 ~~~~~l~~~~~iIiDEah~~~~~~~~~~i~~i~~~--~~~--~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~ 337 (435)
.+.+.+.++++|||||||++.+.+|...+..++.. ++. ..|+++||||++..+..+...++.++..+.........
T Consensus 168 ~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (417)
T 2i4i_A 168 RGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTS 247 (417)
T ss_dssp TTSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC----CC
T ss_pred cCCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCCCc
Confidence 87788999999999999999999999999999875 333 67999999999999999999999999988887777777
Q ss_pred CceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHH
Q 013858 338 ANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESAL 417 (435)
Q Consensus 338 ~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~ 417 (435)
..+.+.+..+....+...+.+.+... ...+++||||+++++++.+++.|+..|+.+..+||++++++|..++
T Consensus 248 ~~i~~~~~~~~~~~~~~~l~~~l~~~--------~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~ 319 (417)
T 2i4i_A 248 ENITQKVVWVEESDKRSFLLDLLNAT--------GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEAL 319 (417)
T ss_dssp SSEEEEEEECCGGGHHHHHHHHHHTC--------CTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHH
T ss_pred cCceEEEEEeccHhHHHHHHHHHHhc--------CCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHH
Confidence 78899999998888888887776542 3456799999999999999999999999999999999999999999
Q ss_pred HHHHcCCCcEEEEcCCC
Q 013858 418 RDFRNGSTNILVFSYKL 434 (435)
Q Consensus 418 ~~f~~g~~~VLVaT~~L 434 (435)
+.|++|+.+|||||+++
T Consensus 320 ~~f~~g~~~vlvaT~~~ 336 (417)
T 2i4i_A 320 HQFRSGKSPILVATAVA 336 (417)
T ss_dssp HHHHHTSSCEEEECHHH
T ss_pred HHHHcCCCCEEEECChh
Confidence 99999999999999864
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=7.4e-47 Score=373.27 Aligned_cols=302 Identities=31% Similarity=0.531 Sum_probs=269.6
Q ss_pred CCCCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeE
Q 013858 118 APIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLA 197 (435)
Q Consensus 118 ~~~~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~ 197 (435)
.+..+|+++++++.+++.|..+||..|+++|.++++.++.|+++++++|||+|||++|++|++..+.. ...++++
T Consensus 34 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~-----~~~~~~~ 108 (410)
T 2j0s_A 34 DVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDI-----QVRETQA 108 (410)
T ss_dssp CCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCT-----TSCSCCE
T ss_pred cCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhh-----ccCCceE
Confidence 44567999999999999999999999999999999999999999999999999999999999887542 1236789
Q ss_pred EEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEec
Q 013858 198 LVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDE 277 (435)
Q Consensus 198 lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDE 277 (435)
||++|+++|+.|+.+.+++++... ++.+..++|+.....+...+..+++|+|+||++|.+.+....+.+.++++|||||
T Consensus 109 lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDE 187 (410)
T 2j0s_A 109 LILAPTRELAVQIQKGLLALGDYM-NVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDE 187 (410)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTT-TCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEET
T ss_pred EEEcCcHHHHHHHHHHHHHHhccC-CeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEcc
Confidence 999999999999999999998765 6889999999998888777878899999999999999988778889999999999
Q ss_pred CCcccCCCCHHHHHHHHHhCCCCCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEEEcChhh-HHHHH
Q 013858 278 ADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENE-KVDRL 356 (435)
Q Consensus 278 ah~~~~~~~~~~i~~i~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~-k~~~l 356 (435)
||++.+.++...+..++..+++..|+++||||++..+..+...++.+|..+...........+.+.+..+.... |...+
T Consensus 188 ah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l 267 (410)
T 2j0s_A 188 ADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTL 267 (410)
T ss_dssp HHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHhHHHHH
Confidence 99999999999999999999999999999999999998888899999988877666666677888887776544 77766
Q ss_pred HHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 357 LALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 357 ~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
.+.+... ..+++||||+++++++.+++.|+..|+.+..+||++++.+|..+++.|++|+.+|||||+++
T Consensus 268 ~~~~~~~---------~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~ 336 (410)
T 2j0s_A 268 CDLYDTL---------TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVW 336 (410)
T ss_dssp HHHHHHH---------TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGG
T ss_pred HHHHHhc---------CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChh
Confidence 6666542 23469999999999999999999999999999999999999999999999999999999975
No 4
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=2.1e-45 Score=363.09 Aligned_cols=303 Identities=33% Similarity=0.551 Sum_probs=263.4
Q ss_pred CCCCCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCe
Q 013858 117 PAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPL 196 (435)
Q Consensus 117 ~~~~~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~ 196 (435)
+....+|+++++++.+++.+..+|+..|+++|.++++.++.|+++++++|||+|||++|++|++..+... ..+++
T Consensus 36 ~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~-----~~~~~ 110 (414)
T 3eiq_A 36 NEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD-----LKATQ 110 (414)
T ss_dssp CCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTT-----SCSCC
T ss_pred cchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhc-----CCcee
Confidence 4455679999999999999999999999999999999999999999999999999999999999876442 23678
Q ss_pred EEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHh-CCCcEEEECcHHHHHHHHcCCCCCCCceEEEE
Q 013858 197 ALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELR-GGVSIVVATPGRFLDHLQQGNTSLSRVSFVIL 275 (435)
Q Consensus 197 ~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIi 275 (435)
+||++|+++|+.|+.+.+++++... ++.+..++|+.........+. .+++|+|+||++|++.+....+.+.++++|||
T Consensus 111 ~lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vVi 189 (414)
T 3eiq_A 111 ALVLAPTRELAQQIQKVVMALGDYM-GASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVL 189 (414)
T ss_dssp EEEECSSHHHHHHHHHHHHHHGGGS-CCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEE
T ss_pred EEEEeChHHHHHHHHHHHHHHhccc-CceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEE
Confidence 9999999999999999999998775 688889999988877766665 67899999999999999887788899999999
Q ss_pred ecCCcccCCCCHHHHHHHHHhCCCCCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEEEcChhh-HHH
Q 013858 276 DEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENE-KVD 354 (435)
Q Consensus 276 DEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~-k~~ 354 (435)
||||++.+.++...+..++..++++.|+++||||++..+......++.++..+...........+.+.+....... +..
T Consensus 190 DEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (414)
T 3eiq_A 190 DEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLD 269 (414)
T ss_dssp CSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTTHHH
T ss_pred ECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHhHHH
Confidence 9999999999999999999999999999999999999999999999999998887777666777788777775544 666
Q ss_pred HHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 355 RLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 355 ~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
.+...+.. ...+++||||+++++++.+++.|+..++.+..+||++++.+|..+++.|++|+.+|||||+++
T Consensus 270 ~l~~~~~~---------~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~ 340 (414)
T 3eiq_A 270 TLCDLYET---------LTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLL 340 (414)
T ss_dssp HHHHHHHS---------SCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSC
T ss_pred HHHHHHHh---------CCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCcc
Confidence 66555533 345679999999999999999999999999999999999999999999999999999999986
No 5
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=1.3e-44 Score=356.01 Aligned_cols=300 Identities=32% Similarity=0.512 Sum_probs=265.2
Q ss_pred CCCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEE
Q 013858 119 PIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLAL 198 (435)
Q Consensus 119 ~~~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~l 198 (435)
...+|+++++++.+.+.|..+||..|+++|.++++.++.|+++++++|||+|||++|++|++..+... ..++++|
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~-----~~~~~~l 93 (400)
T 1s2m_A 19 KGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPK-----LNKIQAL 93 (400)
T ss_dssp --CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTT-----SCSCCEE
T ss_pred ccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhc-----cCCccEE
Confidence 44579999999999999999999999999999999999999999999999999999999998876432 2356899
Q ss_pred EEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecC
Q 013858 199 VLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEA 278 (435)
Q Consensus 199 il~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEa 278 (435)
|++|+++|+.|+.+.+++++... ++.+..+.|+............+++|+|+||++|++.+......+.++++||||||
T Consensus 94 il~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEa 172 (400)
T 1s2m_A 94 IMVPTRELALQTSQVVRTLGKHC-GISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEA 172 (400)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTT-TCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESH
T ss_pred EEcCCHHHHHHHHHHHHHHhccc-CceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCc
Confidence 99999999999999999998765 68899999999888777777788999999999999998877778899999999999
Q ss_pred CcccCCCCHHHHHHHHHhCCCCCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHH
Q 013858 279 DRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLA 358 (435)
Q Consensus 279 h~~~~~~~~~~i~~i~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 358 (435)
|++.+.++...+..++..+++..|+++||||++..+......++.++..+..... .....+.+.+..+....|...+..
T Consensus 173 H~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~~~l~~ 251 (400)
T 1s2m_A 173 DKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE-LTLKGITQYYAFVEERQKLHCLNT 251 (400)
T ss_dssp HHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS-CBCTTEEEEEEECCGGGHHHHHHH
T ss_pred hHhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc-cccCCceeEEEEechhhHHHHHHH
Confidence 9998888888899999989889999999999999999999999988877654432 344567888888888888877776
Q ss_pred HHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 359 LLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 359 ~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
.+.. ...+++||||+++++++.+++.|+..|+.+..+||++++.+|..+++.|++|+.+|||||+++
T Consensus 252 ~~~~---------~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~ 318 (400)
T 1s2m_A 252 LFSK---------LQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLL 318 (400)
T ss_dssp HHHH---------SCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCS
T ss_pred HHhh---------cCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCcc
Confidence 6654 345679999999999999999999999999999999999999999999999999999999986
No 6
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=2.4e-44 Score=352.91 Aligned_cols=300 Identities=31% Similarity=0.513 Sum_probs=265.0
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEE
Q 013858 121 ESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 200 (435)
Q Consensus 121 ~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil 200 (435)
.+|+++++++.+.+.|..+|+..|+++|.++++.++.|+++++++|||+|||++|++|++..+... ..++++||+
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-----~~~~~~lil 82 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV-----TGQVSVLVM 82 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCC-----TTCCCEEEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhccc-----CCCeeEEEE
Confidence 359999999999999999999999999999999999999999999999999999999998875431 235689999
Q ss_pred ccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHh-CCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCC
Q 013858 201 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELR-GGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEAD 279 (435)
Q Consensus 201 ~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah 279 (435)
+|+++|+.|+.+.++++....+++++..++|+.........+. ..++|+|+||++|...+......+.++++|||||||
T Consensus 83 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH 162 (391)
T 1xti_A 83 CHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECD 162 (391)
T ss_dssp CSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHH
T ss_pred CCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHH
Confidence 9999999999999999988776899999999988776665554 447999999999999988877788999999999999
Q ss_pred cccCC-CCHHHHHHHHHhCCCCCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCC-CCCceEEEEEEcChhhHHHHHH
Q 013858 280 RMLDM-GFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSS-PTANVIQILEKVSENEKVDRLL 357 (435)
Q Consensus 280 ~~~~~-~~~~~i~~i~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~i~~~~~~~~~~~k~~~l~ 357 (435)
++.+. ++...+..++...++..|+++||||+++.+...+..++.++..+....... ....+.+.+.......+...+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 242 (391)
T 1xti_A 163 KMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLF 242 (391)
T ss_dssp HHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHHHH
T ss_pred HHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHHHHH
Confidence 88874 678888889988888999999999999999999999999998887665443 3456778888888888888887
Q ss_pred HHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 358 ALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 358 ~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
+.+.. ...+++||||+++++++.+++.|+..|+.+..+||++++.+|..+++.|++|+.+|||||+++
T Consensus 243 ~~l~~---------~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~ 310 (391)
T 1xti_A 243 DLLDV---------LEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLF 310 (391)
T ss_dssp HHHHH---------SCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCC
T ss_pred HHHHh---------cCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChh
Confidence 77754 345679999999999999999999999999999999999999999999999999999999986
No 7
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=4e-44 Score=353.63 Aligned_cols=302 Identities=27% Similarity=0.425 Sum_probs=261.3
Q ss_pred CCCCCCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC--CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCC
Q 013858 116 APAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSG--RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGD 193 (435)
Q Consensus 116 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~--~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~ 193 (435)
...++.+|+++++++.+++.|..+|+..|+++|.++++.++.+ +++++++|||+|||++|++|++..+... ..
T Consensus 20 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~-----~~ 94 (412)
T 3fht_A 20 PLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-----NK 94 (412)
T ss_dssp TTCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT-----SC
T ss_pred CccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhc-----CC
Confidence 3456778999999999999999999999999999999999987 8999999999999999999999876542 23
Q ss_pred CCeEEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHc-CCCCCCCceE
Q 013858 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQ-GNTSLSRVSF 272 (435)
Q Consensus 194 ~~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~-~~~~l~~~~~ 272 (435)
++++||++|+++|+.|+++.+++++...+++.+....++...... ...+++|+|+||++|++.+.. ..+.+.++++
T Consensus 95 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~ 171 (412)
T 3fht_A 95 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKV 171 (412)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCSSCGGGCCE
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHHhcCCcChhhCcE
Confidence 568999999999999999999999887777888888887654322 234579999999999998865 4566789999
Q ss_pred EEEecCCcccC-CCCHHHHHHHHHhCCCCCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEEEcCh-h
Q 013858 273 VILDEADRMLD-MGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSE-N 350 (435)
Q Consensus 273 iIiDEah~~~~-~~~~~~i~~i~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~-~ 350 (435)
|||||||++.+ .++...+..+...+++..|+++||||++..+..+...++.++..+...........+.+.+..... .
T Consensus 172 iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (412)
T 3fht_A 172 FVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRD 251 (412)
T ss_dssp EEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSHH
T ss_pred EEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCChH
Confidence 99999998877 678889999999999999999999999999999999999999888777766667778887777654 5
Q ss_pred hHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEE
Q 013858 351 EKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVF 430 (435)
Q Consensus 351 ~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVa 430 (435)
.+...+...+.. ..++++||||+++++++.+++.|+..++.+..+||++++.+|..+++.|++|+.+||||
T Consensus 252 ~~~~~l~~~~~~---------~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~ 322 (412)
T 3fht_A 252 EKFQALCNLYGA---------ITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVT 322 (412)
T ss_dssp HHHHHHHHHHHH---------HSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEE
T ss_pred HHHHHHHHHHhh---------cCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEE
Confidence 566666655543 23457999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 013858 431 SYKL 434 (435)
Q Consensus 431 T~~L 434 (435)
|+++
T Consensus 323 T~~~ 326 (412)
T 3fht_A 323 TNVC 326 (412)
T ss_dssp CGGG
T ss_pred cCcc
Confidence 9976
No 8
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=1.7e-43 Score=346.92 Aligned_cols=297 Identities=28% Similarity=0.470 Sum_probs=254.7
Q ss_pred CCCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC--CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCe
Q 013858 119 PIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSG--RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPL 196 (435)
Q Consensus 119 ~~~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~--~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~ 196 (435)
...+|+++++++.+++.+..+|+..|+++|.++++.++.+ +++++++|||+|||++|++|++..+... ..+++
T Consensus 3 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~-----~~~~~ 77 (395)
T 3pey_A 3 MAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPE-----DASPQ 77 (395)
T ss_dssp -CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT-----CCSCC
T ss_pred cccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccC-----CCCcc
Confidence 3467999999999999999999999999999999999988 8999999999999999999998876442 23678
Q ss_pred EEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEe
Q 013858 197 ALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILD 276 (435)
Q Consensus 197 ~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiD 276 (435)
+||++|+++|+.|+++.+++++... ++.+...+++..... ...+++|+|+||++|.+.+......+.++++||||
T Consensus 78 ~lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiD 152 (395)
T 3pey_A 78 AICLAPSRELARQTLEVVQEMGKFT-KITSQLIVPDSFEKN----KQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLD 152 (395)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTS-CCCEEEESTTSSCTT----SCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHhccc-CeeEEEEecCchhhh----ccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEE
Confidence 9999999999999999999998665 577777777654322 12358999999999999998877889999999999
Q ss_pred cCCcccC-CCCHHHHHHHHHhCCCCCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEEEcCh-hhHHH
Q 013858 277 EADRMLD-MGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSE-NEKVD 354 (435)
Q Consensus 277 Eah~~~~-~~~~~~i~~i~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~-~~k~~ 354 (435)
|||++.+ .++...+..+...++++.|+++||||+++.+..+...++.++..+...........+.+.+..... ..+..
T Consensus 153 Eah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (395)
T 3pey_A 153 EADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFD 232 (395)
T ss_dssp THHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHHHHHH
T ss_pred ChhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCchHHHHH
Confidence 9998877 678889999999999999999999999999999999999988887776666666677777777644 44554
Q ss_pred HHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 355 RLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 355 ~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
.+...+.. ...+++||||+++++++.+++.|+..++.+..+||++++.+|..+++.|++|+.+|||||+++
T Consensus 233 ~l~~~~~~---------~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~ 303 (395)
T 3pey_A 233 VLTELYGL---------MTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVL 303 (395)
T ss_dssp HHHHHHTT---------TTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGG
T ss_pred HHHHHHHh---------ccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChh
Confidence 44444322 345679999999999999999999999999999999999999999999999999999999975
No 9
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=9.9e-45 Score=355.84 Aligned_cols=304 Identities=32% Similarity=0.517 Sum_probs=189.3
Q ss_pred CCCCCCCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCC
Q 013858 115 PAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDG 194 (435)
Q Consensus 115 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~ 194 (435)
....+..+|+++++++.+.+.+..+|+..|+++|.++++.++.|+++++++|||+|||++|++|++..+... ..+
T Consensus 15 ~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~-----~~~ 89 (394)
T 1fuu_A 15 NYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS-----VKA 89 (394)
T ss_dssp SSCCCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTT-----CCS
T ss_pred hcccccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhcc-----CCC
Confidence 345567789999999999999999999999999999999999999999999999999999999998876442 236
Q ss_pred CeEEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEE
Q 013858 195 PLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVI 274 (435)
Q Consensus 195 ~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iI 274 (435)
+++||++|+++|+.|+.+.+++++... ++++..+.|+.........+. +++|+|+||++|.+.+....+.+.++++||
T Consensus 90 ~~~lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~vI 167 (394)
T 1fuu_A 90 PQALMLAPTRELALQIQKVVMALAFHM-DIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFI 167 (394)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTS-CCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCEEE
T ss_pred CCEEEEcCCHHHHHHHHHHHHHHhccC-CeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcEEE
Confidence 789999999999999999999998765 688999999988776655544 589999999999999988777889999999
Q ss_pred EecCCcccCCCCHHHHHHHHHhCCCCCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEEEcChhh-HH
Q 013858 275 LDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENE-KV 353 (435)
Q Consensus 275 iDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~-k~ 353 (435)
+||||++.+.++...+..++..+++..|+++||||+++.+......++.+|..+...........+.+.+..+.... +.
T Consensus 168 iDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (394)
T 1fuu_A 168 LDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKY 247 (394)
T ss_dssp EETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC----------------------
T ss_pred EEChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhHH
Confidence 99999999999999999999999999999999999999999999999999998887765555555666655554443 44
Q ss_pred HHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCC
Q 013858 354 DRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYK 433 (435)
Q Consensus 354 ~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~ 433 (435)
..+...+.. ...+++||||+++++++.+++.|+..++.+..+||++++.+|..+++.|++|+.+|||||++
T Consensus 248 ~~l~~~~~~---------~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~ 318 (394)
T 1fuu_A 248 ECLTDLYDS---------ISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDL 318 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhc---------CCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECCh
Confidence 444444432 23356999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 013858 434 L 434 (435)
Q Consensus 434 L 434 (435)
+
T Consensus 319 ~ 319 (394)
T 1fuu_A 319 L 319 (394)
T ss_dssp -
T ss_pred h
Confidence 5
No 10
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=8.6e-43 Score=338.53 Aligned_cols=292 Identities=37% Similarity=0.580 Sum_probs=258.4
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC-CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEE
Q 013858 121 ESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSG-RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALV 199 (435)
Q Consensus 121 ~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~-~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~li 199 (435)
.+|+++++++.+.+.|..+|+..|+++|.++++.++.+ +++++++|||+|||++|++|++..+... .++++||
T Consensus 6 ~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~------~~~~~li 79 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN------NGIEAII 79 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS------SSCCEEE
T ss_pred CchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc------CCCcEEE
Confidence 46999999999999999999999999999999999988 6899999999999999999988775432 3678999
Q ss_pred EccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCC
Q 013858 200 LAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEAD 279 (435)
Q Consensus 200 l~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah 279 (435)
++|+++|+.|+.+.++++.... ++.+..++|+.........+. +++|+|+||++|.+.+......+.++++|||||||
T Consensus 80 l~P~~~L~~q~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah 157 (367)
T 1hv8_A 80 LTPTRELAIQVADEIESLKGNK-NLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDEAD 157 (367)
T ss_dssp ECSCHHHHHHHHHHHHHHHCSS-CCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHH
T ss_pred EcCCHHHHHHHHHHHHHHhCCC-CceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEEeCch
Confidence 9999999999999999988654 688899999998877665555 58999999999999998877788999999999999
Q ss_pred cccCCCCHHHHHHHHHhCCCCCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHH
Q 013858 280 RMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLAL 359 (435)
Q Consensus 280 ~~~~~~~~~~i~~i~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~ 359 (435)
++.+.++...+..++..+++..|+++||||++.........++.++..+.... ...+.+.+..+....+...+.+.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~ 233 (367)
T 1hv8_A 158 EMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKI----NANIEQSYVEVNENERFEALCRL 233 (367)
T ss_dssp HHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCS----SSSSEEEEEECCGGGHHHHHHHH
T ss_pred HhhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecC----CCCceEEEEEeChHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988776665432 33667778888888888877766
Q ss_pred HHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 360 LVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 360 l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
+. ...+++||||+++++++.+++.|+..|+.+..+||++++.+|..+++.|++|+.+|||||+++
T Consensus 234 l~----------~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~ 298 (367)
T 1hv8_A 234 LK----------NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVM 298 (367)
T ss_dssp HC----------STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTH
T ss_pred Hh----------cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChh
Confidence 53 234579999999999999999999999999999999999999999999999999999999975
No 11
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=7.3e-45 Score=366.18 Aligned_cols=300 Identities=27% Similarity=0.430 Sum_probs=180.3
Q ss_pred CCCCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC--CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCC
Q 013858 118 APIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSG--RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGP 195 (435)
Q Consensus 118 ~~~~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~--~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~ 195 (435)
.+..+|++++|++.+++.|..+||..|+++|.++++.++.+ ++++++||||||||++|++|++..+... ..++
T Consensus 89 ~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~-----~~~~ 163 (479)
T 3fmp_B 89 YSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-----NKYP 163 (479)
T ss_dssp CCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTT-----SCSC
T ss_pred cCcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhc-----CCCC
Confidence 45678999999999999999999999999999999999987 8999999999999999999998776442 2356
Q ss_pred eEEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHc-CCCCCCCceEEE
Q 013858 196 LALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQ-GNTSLSRVSFVI 274 (435)
Q Consensus 196 ~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~-~~~~l~~~~~iI 274 (435)
++||++|+++|+.|+++.+++++...+++.+....++...... ...+++|+|+||++|++++.+ ..+.+.++++||
T Consensus 164 ~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iV 240 (479)
T 3fmp_B 164 QCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFV 240 (479)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEE
T ss_pred cEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHHhcCCcCcccCCEEE
Confidence 8999999999999999999999987777888888887653321 134578999999999999865 345678999999
Q ss_pred EecCCcccC-CCCHHHHHHHHHhCCCCCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEEEcCh-hhH
Q 013858 275 LDEADRMLD-MGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSE-NEK 352 (435)
Q Consensus 275 iDEah~~~~-~~~~~~i~~i~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~-~~k 352 (435)
|||||++.+ .++...+..++..++..+|+|+||||++..+..++..++.++..+...........+.+.+..+.. ..+
T Consensus 241 iDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (479)
T 3fmp_B 241 LDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEK 320 (479)
T ss_dssp ECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC----------------------
T ss_pred EECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCHHHH
Confidence 999998887 678888999999999999999999999999999999999999988887776666677777666654 445
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcC
Q 013858 353 VDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSY 432 (435)
Q Consensus 353 ~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~ 432 (435)
...+...+.. ...+++||||+++..|+.+++.|+..++.+..+||++++.+|..+++.|++|+.+|||||+
T Consensus 321 ~~~l~~~~~~---------~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~ 391 (479)
T 3fmp_B 321 FQALCNLYGA---------ITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN 391 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhh---------ccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcc
Confidence 5555554433 2345699999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 013858 433 KL 434 (435)
Q Consensus 433 ~L 434 (435)
++
T Consensus 392 ~~ 393 (479)
T 3fmp_B 392 VC 393 (479)
T ss_dssp --
T ss_pred cc
Confidence 86
No 12
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=7.8e-43 Score=358.99 Aligned_cols=302 Identities=28% Similarity=0.399 Sum_probs=248.4
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHh--cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChh
Q 013858 128 LHPSIMKDIEFHEYTRPTSIQAQAMPVAL--SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRE 205 (435)
Q Consensus 128 l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~--~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~ 205 (435)
|++.+++.+..+||..|+|+|.++|+.++ .|+++++++|||+|||++|++|++..+..... ....++++||++||++
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~-~~~~~~~~lvl~Ptr~ 106 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF-DSQYMVKAVIVAPTRD 106 (579)
T ss_dssp SCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT-SSTTSCCEEEECSSHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccc-cccCCCeEEEEcchHH
Confidence 99999999999999999999999999999 67899999999999999999999998776432 2234678999999999
Q ss_pred hHHHHHHHHHHHhh---cCCCceEEEEECCCCHHHHHHHHh-CCCcEEEECcHHHHHHHHcC-CCCCCCceEEEEecCCc
Q 013858 206 LAQQIEKEVKALSR---SLDSFKTAIVVGGTNIAEQRSELR-GGVSIVVATPGRFLDHLQQG-NTSLSRVSFVILDEADR 280 (435)
Q Consensus 206 la~q~~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~-~~~~I~v~T~~~l~~~l~~~-~~~l~~~~~iIiDEah~ 280 (435)
|+.|+.++++++.. ....+.+..++|+.....+...+. .+++|+|+||++|++.+.+. ...+.++++|||||||+
T Consensus 107 La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 186 (579)
T 3sqw_A 107 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADR 186 (579)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHH
T ss_pred HHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHH
Confidence 99999999999864 234577888999998877766653 47899999999999888653 34578899999999999
Q ss_pred ccCCCCHHHHHHHHHhCC-------CCCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCC----CCCCCceEEEEEEcCh
Q 013858 281 MLDMGFEPQIREVMQNLP-------DKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKV----SSPTANVIQILEKVSE 349 (435)
Q Consensus 281 ~~~~~~~~~i~~i~~~~~-------~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~----~~~~~~i~~~~~~~~~ 349 (435)
+++++|...+..++..++ +.+|+++||||+++.+..++..++.++..+.+... ......+.+.+.....
T Consensus 187 l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 266 (579)
T 3sqw_A 187 LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEK 266 (579)
T ss_dssp HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESS
T ss_pred hhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecc
Confidence 999999998888876653 37799999999999999999999988876655432 2233456666555543
Q ss_pred -hhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhC---CCcEEEecCCCCHHHHHHHHHHHHcCCC
Q 013858 350 -NEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE---GLHAVALHGGRNQSDRESALRDFRNGST 425 (435)
Q Consensus 350 -~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~---~~~v~~lh~~~~~~~R~~~~~~f~~g~~ 425 (435)
..+...++..+.+..... .++.++||||+++..|+.+++.|+.. ++.+..+||++++.+|..+++.|++|+.
T Consensus 267 ~~~~~~~~~~~l~~~~~~~----~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~ 342 (579)
T 3sqw_A 267 FANSIFAAVEHIKKQIKER----DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDES 342 (579)
T ss_dssp TTHHHHHHHHHHHHHHHHT----TTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSS
T ss_pred hhhhHHHHHHHHHHHHhhc----CCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCC
Confidence 344444444444433221 44567999999999999999999887 8999999999999999999999999999
Q ss_pred cEEEEcCCC
Q 013858 426 NILVFSYKL 434 (435)
Q Consensus 426 ~VLVaT~~L 434 (435)
+|||||+++
T Consensus 343 ~vLVaT~~~ 351 (579)
T 3sqw_A 343 GILVCTDVG 351 (579)
T ss_dssp EEEEECGGG
T ss_pred eEEEEcchh
Confidence 999999986
No 13
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=2.6e-42 Score=354.51 Aligned_cols=302 Identities=28% Similarity=0.401 Sum_probs=247.3
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHh--cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChh
Q 013858 128 LHPSIMKDIEFHEYTRPTSIQAQAMPVAL--SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRE 205 (435)
Q Consensus 128 l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~--~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~ 205 (435)
|++.+++.+..+||..|+|+|.++|+.++ .++++++++|||+|||++|++|++..+..... ....++++||++||++
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~-~~~~~~~~lil~Ptr~ 157 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF-DSQYMVKAVIVAPTRD 157 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT-SSTTSCCEEEECSSHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccc-cccCCeeEEEEcCcHH
Confidence 99999999999999999999999999999 67899999999999999999999998876432 2233578999999999
Q ss_pred hHHHHHHHHHHHhhc---CCCceEEEEECCCCHHHHHHHH-hCCCcEEEECcHHHHHHHHcC-CCCCCCceEEEEecCCc
Q 013858 206 LAQQIEKEVKALSRS---LDSFKTAIVVGGTNIAEQRSEL-RGGVSIVVATPGRFLDHLQQG-NTSLSRVSFVILDEADR 280 (435)
Q Consensus 206 la~q~~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~-~~~~~I~v~T~~~l~~~l~~~-~~~l~~~~~iIiDEah~ 280 (435)
||.|++++++++... ...+.+..++|+.........+ ..+++|+|+||++|++.+.+. ...+.++++|||||||+
T Consensus 158 La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 237 (563)
T 3i5x_A 158 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADR 237 (563)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHH
T ss_pred HHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHH
Confidence 999999999997643 2356788899998877766555 457899999999999887653 23578899999999999
Q ss_pred ccCCCCHHHHHHHHHhC-------CCCCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCC----CCCCceEEEEEEcCh
Q 013858 281 MLDMGFEPQIREVMQNL-------PDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVS----SPTANVIQILEKVSE 349 (435)
Q Consensus 281 ~~~~~~~~~i~~i~~~~-------~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~i~~~~~~~~~ 349 (435)
+++++|...+..++..+ .+.+|+++||||+++.+..++..++.++..+.+.... .....+.+.+.....
T Consensus 238 l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (563)
T 3i5x_A 238 LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEK 317 (563)
T ss_dssp HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESS
T ss_pred HhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECch
Confidence 99999999888887664 3378999999999999999999999887766653322 233445666555543
Q ss_pred -hhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhC---CCcEEEecCCCCHHHHHHHHHHHHcCCC
Q 013858 350 -NEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE---GLHAVALHGGRNQSDRESALRDFRNGST 425 (435)
Q Consensus 350 -~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~---~~~v~~lh~~~~~~~R~~~~~~f~~g~~ 425 (435)
..+...++..+.+..... .+++++||||++++.|+.+++.|+.. ++.+..+||++++.+|..+++.|++|+.
T Consensus 318 ~~~~~~~~~~~l~~~~~~~----~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~ 393 (563)
T 3i5x_A 318 FANSIFAAVEHIKKQIKER----DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDES 393 (563)
T ss_dssp TTHHHHHHHHHHHHHHHHT----TTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSS
T ss_pred hHhhHHHHHHHHHHHHhhc----CCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCC
Confidence 344444455444433322 44567999999999999999999886 8999999999999999999999999999
Q ss_pred cEEEEcCCC
Q 013858 426 NILVFSYKL 434 (435)
Q Consensus 426 ~VLVaT~~L 434 (435)
+|||||+++
T Consensus 394 ~vLvaT~~~ 402 (563)
T 3i5x_A 394 GILVCTDVG 402 (563)
T ss_dssp EEEEECGGG
T ss_pred CEEEEcchh
Confidence 999999986
No 14
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=3.3e-41 Score=308.69 Aligned_cols=238 Identities=42% Similarity=0.721 Sum_probs=216.9
Q ss_pred CCHHHHHHHHHHcCceEEecCCCCCCCCCCCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCc
Q 013858 91 FNPEQIEEVRLRLNVDVTVASGSVPAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSG 170 (435)
Q Consensus 91 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsG 170 (435)
.++++++.++....+.+.+. ..|.++.+|+++++++.+++.+..+||..|+++|.++++.++.|+++++++|||+|
T Consensus 3 ~~~~~~~~~~~~~~i~~~~~----~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsG 78 (242)
T 3fe2_A 3 RTAQEVETYRRSKEITVRGH----NCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSG 78 (242)
T ss_dssp ---CHHHHHHHHHTEEEESS----CCCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSC
T ss_pred CCHHHHHHHHhcCceEEeCC----CCCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCH
Confidence 34567888999988888765 68899999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEE
Q 013858 171 KTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVV 250 (435)
Q Consensus 171 KT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v 250 (435)
||++|++|++..+..........++++||++||++|+.|+.+.+++++... ++++..++||.....+...+..+++|+|
T Consensus 79 KT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~I~v 157 (242)
T 3fe2_A 79 KTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRAC-RLKSTCIYGGAPKGPQIRDLERGVEICI 157 (242)
T ss_dssp HHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHT-TCCEEEECTTSCHHHHHHHHHHCCSEEE
T ss_pred HHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhc-CceEEEEECCCChHHHHHHhcCCCCEEE
Confidence 999999999999876554444567899999999999999999999998776 6899999999999888888888899999
Q ss_pred ECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEcccccHHHHHHHHHHcCCCeEEEe
Q 013858 251 ATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKV 330 (435)
Q Consensus 251 ~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~ 330 (435)
+||++|.+.+......+.++++|||||||++.+++|...+..++..+++++|+++||||+|+.++.+++.++.+|+.+.+
T Consensus 158 ~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~ 237 (242)
T 3fe2_A 158 ATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINI 237 (242)
T ss_dssp ECHHHHHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEE
T ss_pred ECHHHHHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEe
Confidence 99999999998878889999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCC
Q 013858 331 GKV 333 (435)
Q Consensus 331 ~~~ 333 (435)
+..
T Consensus 238 ~~~ 240 (242)
T 3fe2_A 238 GAL 240 (242)
T ss_dssp CC-
T ss_pred cCC
Confidence 753
No 15
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.5e-40 Score=317.46 Aligned_cols=276 Identities=33% Similarity=0.513 Sum_probs=236.7
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhH
Q 013858 128 LHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELA 207 (435)
Q Consensus 128 l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la 207 (435)
|++.+.+.|..+|+..|+++|.++++.++.++++++++|||+|||++|++|++.. ++++||++|+++|+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~-----------~~~~liv~P~~~L~ 69 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL-----------GMKSLVVTPTRELT 69 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH-----------TCCEEEECSSHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh-----------cCCEEEEeCCHHHH
Confidence 5788999999999999999999999999999999999999999999999888764 46799999999999
Q ss_pred HHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCCCH
Q 013858 208 QQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFE 287 (435)
Q Consensus 208 ~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~~~ 287 (435)
.|+.+.+++++... ++++..++|+.........+. .++|+|+||++|.+.+......+.++++||+||||++.+.++.
T Consensus 70 ~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~ 147 (337)
T 2z0m_A 70 RQVASHIRDIGRYM-DTKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFI 147 (337)
T ss_dssp HHHHHHHHHHTTTS-CCCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhc-CCcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccH
Confidence 99999999998765 688899999988777665554 4899999999999998877777889999999999999999999
Q ss_pred HHHHHHHHhCCCCCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHHHHHHHHhh
Q 013858 288 PQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLA 367 (435)
Q Consensus 288 ~~i~~i~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~ 367 (435)
..+..++..++...++++||||++..+......++.++..+... .....+.+.+..+....+.. ...+..
T Consensus 148 ~~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~----- 217 (337)
T 2z0m_A 148 DDIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC---IGLANVEHKFVHVKDDWRSK--VQALRE----- 217 (337)
T ss_dssp HHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS---GGGGGEEEEEEECSSSSHHH--HHHHHT-----
T ss_pred HHHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc---cccCCceEEEEEeChHHHHH--HHHHHh-----
Confidence 99999999999999999999999999999999999888766432 23445666666665443321 122211
Q ss_pred hccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 368 EKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 368 ~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
...+++||||+++++++.+++.|+ .+..+||++++.+|.++++.|++|+.+|||||+++
T Consensus 218 ----~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~ 276 (337)
T 2z0m_A 218 ----NKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVA 276 (337)
T ss_dssp ----CCCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHH
T ss_pred ----CCCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCcc
Confidence 456679999999999999999886 68899999999999999999999999999999864
No 16
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.2e-42 Score=347.00 Aligned_cols=323 Identities=24% Similarity=0.383 Sum_probs=217.2
Q ss_pred CCCHHHHHHHHHHcCceEEecCCCCCCCCCCCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC--CCEEEEccC
Q 013858 90 RFNPEQIEEVRLRLNVDVTVASGSVPAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSG--RDLLGCAET 167 (435)
Q Consensus 90 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~--~~vii~~~T 167 (435)
....++...+...++..... ..+.|..+..|...++++.+.+.+...|+..|+++|.++++.++.+ +++++++||
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~---~~~~p~~l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apT 167 (508)
T 3fho_A 91 XXXXXXXXXXXXXXXXXXXX---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQS 167 (508)
T ss_dssp ---------------------------------------------------CEECCCTTSSSHHHHHCSSCCCEEEECCS
T ss_pred cccccccccccccccccccc---ccccccccccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCC
Confidence 33344444444444433221 1133445556777789999999999999999999999999999988 899999999
Q ss_pred CCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCc
Q 013858 168 GSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVS 247 (435)
Q Consensus 168 GsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 247 (435)
|+|||++|++|++..+... ..++++||++|+++|+.|+.+++++++... .+......++..... ...+++
T Consensus 168 GsGKT~~~~~~il~~l~~~-----~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~ 237 (508)
T 3fho_A 168 GTGKTAAFALTMLSRVDAS-----VPKPQAICLAPSRELARQIMDVVTEMGKYT-EVKTAFGIKDSVPKG----AKIDAQ 237 (508)
T ss_dssp STTSHHHHHHHHHHHSCTT-----CCSCCEEEECSCHHHHHHHHHHHHHHSTTS-SCCEEC--------------CCCCS
T ss_pred CccHHHHHHHHHHHHHHhC-----CCCceEEEEECcHHHHHHHHHHHHHhCCcc-CeeEEEEeCCccccc----ccCCCC
Confidence 9999999999999886542 235789999999999999999999998654 455555555443222 234689
Q ss_pred EEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccC-CCCHHHHHHHHHhCCCCCeEEEEcccccHHHHHHHHHHcCCCe
Q 013858 248 IVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLD-MGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPV 326 (435)
Q Consensus 248 I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~-~~~~~~i~~i~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~ 326 (435)
|+|+||++|.+.+....+.+.++++|||||||++.+ .++...+..++..++++.|+|+||||+++.+..+...++.++.
T Consensus 238 Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~ 317 (508)
T 3fho_A 238 IVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNAN 317 (508)
T ss_dssp EEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCE
T ss_pred EEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCe
Confidence 999999999999988778899999999999998877 6799999999999999999999999999999999999999988
Q ss_pred EEEeCCCCCCCCceEEEEEEcC-hhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEec
Q 013858 327 QVKVGKVSSPTANVIQILEKVS-ENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALH 405 (435)
Q Consensus 327 ~i~~~~~~~~~~~i~~~~~~~~-~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh 405 (435)
.+...........+.+.+.... ...+...+...+.. ...+++||||+++++|+.+++.|++.++.+..+|
T Consensus 318 ~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~---------~~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~h 388 (508)
T 3fho_A 318 EIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGL---------LTIGQSIIFCKKKDTAEEIARRMTADGHTVACLT 388 (508)
T ss_dssp EECCCCCC----CCCCEEEEC--CHHHHHHHHHHHC------------CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC
T ss_pred EEEeccccCCcccceEEEEECCchHHHHHHHHHHHHh---------cCCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEe
Confidence 8877666555556666666653 44455555554433 2446799999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 406 GGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 406 ~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
|++++.+|..+++.|++|+.+|||||+++
T Consensus 389 g~~~~~~R~~il~~f~~g~~~VLVaT~~l 417 (508)
T 3fho_A 389 GNLEGAQRDAIMDSFRVGTSKVLVTTNVI 417 (508)
T ss_dssp -----CTTGGGTHHHHSSSCCCCEECC--
T ss_pred CCCCHHHHHHHHHHHHCCCCeEEEeCChh
Confidence 99999999999999999999999999976
No 17
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=3.1e-39 Score=330.25 Aligned_cols=285 Identities=15% Similarity=0.251 Sum_probs=224.7
Q ss_pred ccCCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcc
Q 013858 124 TDMCLHPSIMKDIEF-HEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAP 202 (435)
Q Consensus 124 ~~~~l~~~l~~~l~~-~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P 202 (435)
.++++++.+.+.|+. +||..|+|+|.++|+.++.|+++++++|||+|||++|++|++.. ++++||++|
T Consensus 24 ~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~-----------~g~~lVisP 92 (591)
T 2v1x_A 24 EDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS-----------DGFTLVICP 92 (591)
T ss_dssp SCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS-----------SSEEEEECS
T ss_pred ccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc-----------CCcEEEEeC
Confidence 457889999999998 69999999999999999999999999999999999999999753 468999999
Q ss_pred ChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHH------hCCCcEEEECcHHHH------HHHHcCCCCCCCc
Q 013858 203 TRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL------RGGVSIVVATPGRFL------DHLQQGNTSLSRV 270 (435)
Q Consensus 203 ~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~------~~~~~I~v~T~~~l~------~~l~~~~~~l~~~ 270 (435)
+++|+.|+.+.++++ ++.+..+.|+....+..... ..+++|+|+||++|. +.+.. ...+.++
T Consensus 93 ~~~L~~q~~~~l~~~-----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~-~~~~~~i 166 (591)
T 2v1x_A 93 LISLMEDQLMVLKQL-----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK-AYEARRF 166 (591)
T ss_dssp CHHHHHHHHHHHHHH-----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH-HHHTTCE
T ss_pred HHHHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh-hhhccCC
Confidence 999999999999887 47788888888766543322 457899999999874 22322 3356789
Q ss_pred eEEEEecCCcccCCC--CHHHHHH--HHHhCCCCCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEEE
Q 013858 271 SFVILDEADRMLDMG--FEPQIRE--VMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEK 346 (435)
Q Consensus 271 ~~iIiDEah~~~~~~--~~~~i~~--i~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~ 346 (435)
++|||||||++.++| |...+.. ++....++.|+|+||||+++.+...+..++..+..+.+.. ....+++...+..
T Consensus 167 ~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~-~~~r~nl~~~v~~ 245 (591)
T 2v1x_A 167 TRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTA-SFNRPNLYYEVRQ 245 (591)
T ss_dssp EEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEEC-CCCCTTEEEEEEE
T ss_pred cEEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEec-CCCCcccEEEEEe
Confidence 999999999999987 7666544 3434445789999999999998888888876543222222 1223344444333
Q ss_pred cC--hhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCC
Q 013858 347 VS--ENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGS 424 (435)
Q Consensus 347 ~~--~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~ 424 (435)
.. ...+...+.+.+... .+++++||||+++++++.+++.|+..|+.+..+||+|++.+|..+++.|++|+
T Consensus 246 ~~~~~~~~~~~l~~~l~~~--------~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~ 317 (591)
T 2v1x_A 246 KPSNTEDFIEDIVKLINGR--------YKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANE 317 (591)
T ss_dssp CCSSHHHHHHHHHHHHTTT--------TTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred CCCcHHHHHHHHHHHHHHh--------ccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCC
Confidence 32 233444444444321 34567999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEcCCC
Q 013858 425 TNILVFSYKL 434 (435)
Q Consensus 425 ~~VLVaT~~L 434 (435)
.+|||||+++
T Consensus 318 ~~VlVAT~a~ 327 (591)
T 2v1x_A 318 IQVVVATVAF 327 (591)
T ss_dssp SSEEEECTTS
T ss_pred CeEEEEechh
Confidence 9999999986
No 18
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=1.3e-38 Score=322.37 Aligned_cols=283 Identities=19% Similarity=0.278 Sum_probs=223.1
Q ss_pred CCcccCCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEE
Q 013858 121 ESFTDMCLHPSIMKDIEF-HEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALV 199 (435)
Q Consensus 121 ~~~~~~~l~~~l~~~l~~-~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~li 199 (435)
..|+++++++.+.+.|+. +|+..|+++|.++|+.++.|+++++++|||+|||++|++|++.. ++.+||
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~-----------~g~~lv 70 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL-----------NGLTVV 70 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS-----------SSEEEE
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh-----------CCCEEE
Confidence 469999999999999998 89999999999999999999999999999999999999998753 367999
Q ss_pred EccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHH----HHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEE
Q 013858 200 LAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRS----ELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVIL 275 (435)
Q Consensus 200 l~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIi 275 (435)
++|+++|+.|+.+.++++ ++.+..+.++........ ...+..+|+|+||++|........+...++++|||
T Consensus 71 i~P~~aL~~q~~~~l~~~-----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vVi 145 (523)
T 1oyw_A 71 VSPLISLMKDQVDQLQAN-----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAV 145 (523)
T ss_dssp ECSCHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEE
T ss_pred ECChHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEE
Confidence 999999999999988875 467788888777654332 22456899999999995332222234578999999
Q ss_pred ecCCcccCCC--CHHHHHH---HHHhCCCCCeEEEEcccccHHHHHHHHHHc--CCCeEEEeCCCCCCCCceEEEEEEcC
Q 013858 276 DEADRMLDMG--FEPQIRE---VMQNLPDKHQTLLFSATMPVEIEALAQEYL--TDPVQVKVGKVSSPTANVIQILEKVS 348 (435)
Q Consensus 276 DEah~~~~~~--~~~~i~~---i~~~~~~~~q~i~~SATl~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~i~~~~~~~~ 348 (435)
||||++.++| |...+.. ++..+ ++.+++++|||+++.+...+..++ .++..+ ..... ..++...+. .
T Consensus 146 DEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~-~~~~~--r~~l~~~v~--~ 219 (523)
T 1oyw_A 146 DEAHCISQWGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQ-ISSFD--RPNIRYMLM--E 219 (523)
T ss_dssp SSGGGGCTTSSCCCHHHHGGGGHHHHC-TTSCEEEEESCCCHHHHHHHHHHHTCCSCEEE-ECCCC--CTTEEEEEE--E
T ss_pred eCccccCcCCCccHHHHHHHHHHHHhC-CCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEE-eCCCC--CCceEEEEE--e
Confidence 9999999887 6555543 34444 457899999999988766554444 344433 33222 234433332 3
Q ss_pred hhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEE
Q 013858 349 ENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNIL 428 (435)
Q Consensus 349 ~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VL 428 (435)
...+...+.+.+.+ .+++++||||+++++++.+++.|+..|+.+..+||++++++|..+++.|++|+.+||
T Consensus 220 ~~~~~~~l~~~l~~---------~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vl 290 (523)
T 1oyw_A 220 KFKPLDQLMRYVQE---------QRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIV 290 (523)
T ss_dssp CSSHHHHHHHHHHH---------TTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEE
T ss_pred CCCHHHHHHHHHHh---------cCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEE
Confidence 34556666666643 344579999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCC
Q 013858 429 VFSYKL 434 (435)
Q Consensus 429 VaT~~L 434 (435)
|||+++
T Consensus 291 VaT~a~ 296 (523)
T 1oyw_A 291 VATVAF 296 (523)
T ss_dssp EECTTS
T ss_pred EEechh
Confidence 999986
No 19
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.5e-39 Score=347.52 Aligned_cols=286 Identities=18% Similarity=0.187 Sum_probs=225.2
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEE
Q 013858 121 ESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 200 (435)
Q Consensus 121 ~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil 200 (435)
..|..+++++.+...+...++..|+++|.++|+.++.|++++++||||||||++|++|++..+.. ++++||+
T Consensus 162 ~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~--------g~rvlvl 233 (1108)
T 3l9o_A 162 PNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN--------KQRVIYT 233 (1108)
T ss_dssp SCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHT--------TCEEEEE
T ss_pred CCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhc--------CCeEEEE
Confidence 35777788877777777778889999999999999999999999999999999999999988644 6799999
Q ss_pred ccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCc
Q 013858 201 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADR 280 (435)
Q Consensus 201 ~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~ 280 (435)
+|+++|+.|+++.+++++. .+++++|+.. ...+++|+|||||+|.+++.++...+.++++|||||||+
T Consensus 234 ~PtraLa~Q~~~~l~~~~~-----~VglltGd~~-------~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~ 301 (1108)
T 3l9o_A 234 SPIKALSNQKYRELLAEFG-----DVGLMTGDIT-------INPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHY 301 (1108)
T ss_dssp ESSHHHHHHHHHHHHHHTS-----SEEEECSSCB-------CCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGG
T ss_pred cCcHHHHHHHHHHHHHHhC-----CccEEeCccc-------cCCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhh
Confidence 9999999999999988763 5677888764 345689999999999999988776788999999999999
Q ss_pred ccCCCCHHHHHHHHHhCCCCCeEEEEcccccHH--HHHHHHHHcCCCeEEEeCCCCCCCCceEEEEEEcC---------h
Q 013858 281 MLDMGFEPQIREVMQNLPDKHQTLLFSATMPVE--IEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVS---------E 349 (435)
Q Consensus 281 ~~~~~~~~~i~~i~~~~~~~~q~i~~SATl~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~---------~ 349 (435)
+.+.+++..+..++..+++..|+|+||||+|.. +......+...+..+...... ...+.+++.... .
T Consensus 302 l~d~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~r--p~pl~~~~~~~~~~~~~~~vd~ 379 (1108)
T 3l9o_A 302 MRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFR--PTPLQHYLFPAHGDGIYLVVDE 379 (1108)
T ss_dssp TTSHHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCC--SSCEEEEEEETTSSCCEEEEET
T ss_pred ccccchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCC--cccceEEEeecCCcceeeeecc
Confidence 999999999999999999999999999999765 335555666666655443222 122222222110 0
Q ss_pred hh----------------------------------------H---HHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHH
Q 013858 350 NE----------------------------------------K---VDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTR 386 (435)
Q Consensus 350 ~~----------------------------------------k---~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~ 386 (435)
.. + ...+...+..... ...+++||||++++.
T Consensus 380 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~------~~~~~vIVF~~sr~~ 453 (1108)
T 3l9o_A 380 KSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWK------KKYNPVIVFSFSKRD 453 (1108)
T ss_dssp TTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHH------TTCCCEEEEESCHHH
T ss_pred ccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHh------cCCCCEEEEeCcHHH
Confidence 00 0 1122222222111 345679999999999
Q ss_pred HHHHHHHHHhCCC---------------------------------------cEEEecCCCCHHHHHHHHHHHHcCCCcE
Q 013858 387 CDEVSEALVAEGL---------------------------------------HAVALHGGRNQSDRESALRDFRNGSTNI 427 (435)
Q Consensus 387 ~~~l~~~L~~~~~---------------------------------------~v~~lh~~~~~~~R~~~~~~f~~g~~~V 427 (435)
|+.++..|...++ ++..+||+|++.+|..+++.|++|..+|
T Consensus 454 ~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikV 533 (1108)
T 3l9o_A 454 CEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKV 533 (1108)
T ss_dssp HHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCE
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeE
Confidence 9999999865322 2899999999999999999999999999
Q ss_pred EEEcCCC
Q 013858 428 LVFSYKL 434 (435)
Q Consensus 428 LVaT~~L 434 (435)
||||+++
T Consensus 534 LVAT~vl 540 (1108)
T 3l9o_A 534 LFATETF 540 (1108)
T ss_dssp EEEESCC
T ss_pred EEECcHH
Confidence 9999986
No 20
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=5.7e-38 Score=330.65 Aligned_cols=288 Identities=19% Similarity=0.232 Sum_probs=223.0
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEE
Q 013858 121 ESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPV-ALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALV 199 (435)
Q Consensus 121 ~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~-~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~li 199 (435)
.+|+++++++.+.+.+..+|+..|+++|.++++. +..+++++++||||||||++|.++++..+... +++++|
T Consensus 8 ~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-------~~~il~ 80 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN-------GGKAIY 80 (715)
T ss_dssp CBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS-------CSEEEE
T ss_pred CcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC-------CCeEEE
Confidence 4699999999999999999999999999999999 77899999999999999999999999886642 578999
Q ss_pred EccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCC
Q 013858 200 LAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEAD 279 (435)
Q Consensus 200 l~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah 279 (435)
++|+++||.|+++.++.+... ++++...+|+....... ..+++|+|+|||+|..++.+....+.++++|||||||
T Consensus 81 i~P~r~La~q~~~~~~~~~~~--g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H 155 (715)
T 2va8_A 81 VTPLRALTNEKYLTFKDWELI--GFKVAMTSGDYDTDDAW---LKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELH 155 (715)
T ss_dssp ECSCHHHHHHHHHHHGGGGGG--TCCEEECCSCSSSCCGG---GGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGG
T ss_pred EeCcHHHHHHHHHHHHHhhcC--CCEEEEEeCCCCCchhh---cCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechh
Confidence 999999999999999666543 68899999887654321 2368999999999999988766568899999999999
Q ss_pred cccCCCCHHHHHHHHHhCCCCCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCCCCCceEEE------------EEEc
Q 013858 280 RMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQI------------LEKV 347 (435)
Q Consensus 280 ~~~~~~~~~~i~~i~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~------------~~~~ 347 (435)
.+.+.+++..+..++..++ +.|+|+||||+++ .+.+.. |+..+. +...... ..+... ..+.
T Consensus 156 ~l~~~~~~~~l~~i~~~~~-~~~ii~lSATl~n-~~~~~~-~l~~~~-~~~~~r~---~~l~~~~~~~~~~~~~~~~~~~ 228 (715)
T 2va8_A 156 YLNDPERGPVVESVTIRAK-RRNLLALSATISN-YKQIAK-WLGAEP-VATNWRP---VPLIEGVIYPERKKKEYNVIFK 228 (715)
T ss_dssp GGGCTTTHHHHHHHHHHHH-TSEEEEEESCCTT-HHHHHH-HHTCEE-EECCCCS---SCEEEEEEEECSSTTEEEEEET
T ss_pred hcCCcccchHHHHHHHhcc-cCcEEEEcCCCCC-HHHHHH-HhCCCc-cCCCCCC---CCceEEEEecCCcccceeeecC
Confidence 9888788888888887776 7899999999975 344544 444322 1111111 111111 1111
Q ss_pred Chh----hHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCC-------------------------
Q 013858 348 SEN----EKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEG------------------------- 398 (435)
Q Consensus 348 ~~~----~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~------------------------- 398 (435)
... .....+...+.+.. .+++++||||+++++++.+++.|.+..
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 301 (715)
T 2va8_A 229 DNTTKKVHGDDAIIAYTLDSL-------SKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGS 301 (715)
T ss_dssp TSCEEEEESSSHHHHHHHHHH-------TTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCH
T ss_pred cchhhhcccchHHHHHHHHHH-------hcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccc
Confidence 100 00012233333322 345679999999999999999998642
Q ss_pred -----------CcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 399 -----------LHAVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 399 -----------~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
..+.++||++++++|..+++.|++|+.+|||||+++
T Consensus 302 ~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l 348 (715)
T 2va8_A 302 DEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTL 348 (715)
T ss_dssp HHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGG
T ss_pred cccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHH
Confidence 359999999999999999999999999999999986
No 21
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=2.8e-38 Score=286.68 Aligned_cols=215 Identities=39% Similarity=0.603 Sum_probs=187.4
Q ss_pred CCCCCCCCCCccc-CCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCC-CC
Q 013858 113 SVPAPAPIESFTD-MCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTP-VG 190 (435)
Q Consensus 113 ~~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~-~~ 190 (435)
....|.|..+|++ +++++.+++.+..+|+..|+++|.++++.++.|+++++++|||+|||++|++|++..+..... ..
T Consensus 11 ~~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~ 90 (228)
T 3iuy_A 11 KRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISRE 90 (228)
T ss_dssp CCCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC-------
T ss_pred cCcCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhh
Confidence 4478899999999 799999999999999999999999999999999999999999999999999999987754321 11
Q ss_pred CCCCCeEEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCc
Q 013858 191 RGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRV 270 (435)
Q Consensus 191 ~~~~~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~ 270 (435)
...++++||++||++|+.|+.++++++.. .++++..++|+.....+...+..+++|+|+||++|.+.+......+.++
T Consensus 91 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 91 QRNGPGMLVLTPTRELALHVEAECSKYSY--KGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp --CCCSEEEECSSHHHHHHHHHHHHHHCC--TTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred ccCCCcEEEEeCCHHHHHHHHHHHHHhcc--cCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 23478899999999999999999999863 3788999999988887777788889999999999999998878889999
Q ss_pred eEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEcccccHHHHHHHHHHcCCCeEEE
Q 013858 271 SFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVK 329 (435)
Q Consensus 271 ~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~ 329 (435)
++|||||||++.+.+|...+..++..+++++|+++||||+|+.++.+++.++.+|+.+.
T Consensus 169 ~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 169 TYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp CEEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred eEEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 99999999999999999999999999999999999999999999999999999998875
No 22
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=7.1e-38 Score=329.86 Aligned_cols=284 Identities=19% Similarity=0.254 Sum_probs=223.7
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHH-HhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEE
Q 013858 122 SFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPV-ALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 200 (435)
Q Consensus 122 ~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~-~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil 200 (435)
+|+++++++.+.+.+..+|+..|+++|.++++. +..+++++++||||||||++|.+|++..+... +++++|+
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-------~~~~l~i 74 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ-------GGKAVYI 74 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH-------CSEEEEE
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC-------CCEEEEE
Confidence 488999999999999999999999999999998 78999999999999999999999999887643 5789999
Q ss_pred ccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCc
Q 013858 201 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADR 280 (435)
Q Consensus 201 ~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~ 280 (435)
+|+++|+.|++++++++... ++++..++|+...... ...+++|+|+||++|..++......+.++++|||||||+
T Consensus 75 ~P~raLa~q~~~~~~~l~~~--g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~ 149 (720)
T 2zj8_A 75 VPLKALAEEKFQEFQDWEKI--GLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHL 149 (720)
T ss_dssp CSSGGGHHHHHHHTGGGGGG--TCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGG
T ss_pred cCcHHHHHHHHHHHHHHHhc--CCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcc
Confidence 99999999999999766543 6889999987654332 123689999999999998887666688999999999999
Q ss_pred ccCCCCHHHHHHHHHhCCCCCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEE------EcC-----h
Q 013858 281 MLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILE------KVS-----E 349 (435)
Q Consensus 281 ~~~~~~~~~i~~i~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~------~~~-----~ 349 (435)
+.+.++...+..++..++++.|+|+||||+++ ...+. .|+..+. +.... . ...+...+. ... .
T Consensus 150 l~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n-~~~~~-~~l~~~~-~~~~~--r-p~~l~~~~~~~~~~~~~~~~~~~~ 223 (720)
T 2zj8_A 150 IGSRDRGATLEVILAHMLGKAQIIGLSATIGN-PEELA-EWLNAEL-IVSDW--R-PVKLRRGVFYQGFVTWEDGSIDRF 223 (720)
T ss_dssp GGCTTTHHHHHHHHHHHBTTBEEEEEECCCSC-HHHHH-HHTTEEE-EECCC--C-SSEEEEEEEETTEEEETTSCEEEC
T ss_pred cCCCcccHHHHHHHHHhhcCCeEEEEcCCcCC-HHHHH-HHhCCcc-cCCCC--C-CCcceEEEEeCCeeeccccchhhh
Confidence 98888899999998888778999999999975 34444 4444221 11111 1 111222111 111 1
Q ss_pred hhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhC--------------------------------
Q 013858 350 NEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE-------------------------------- 397 (435)
Q Consensus 350 ~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~-------------------------------- 397 (435)
..+...+.+.+ .+++++||||+++++|+.++..|.+.
T Consensus 224 ~~~~~~~~~~~-----------~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~ 292 (720)
T 2zj8_A 224 SSWEELVYDAI-----------RKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKA 292 (720)
T ss_dssp SSTTHHHHHHH-----------HTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHH
T ss_pred hHHHHHHHHHH-----------hCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHH
Confidence 22222222222 12357999999999999999999753
Q ss_pred -CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 398 -GLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 398 -~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
...+..+||++++++|..+++.|++|+.+|||||+++
T Consensus 293 ~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l 330 (720)
T 2zj8_A 293 IRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTL 330 (720)
T ss_dssp HTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTT
T ss_pred HhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHh
Confidence 1259999999999999999999999999999999986
No 23
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=5.3e-38 Score=289.41 Aligned_cols=224 Identities=45% Similarity=0.747 Sum_probs=191.2
Q ss_pred CCCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCC----CCCCC
Q 013858 119 PIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPV----GRGDG 194 (435)
Q Consensus 119 ~~~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~----~~~~~ 194 (435)
++.+|+++++++.+++.|..+|+..|+++|.++++.++.|+++++++|||+|||++|++|++..+...... ....+
T Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~ 100 (253)
T 1wrb_A 21 VIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAY 100 (253)
T ss_dssp CCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBC
T ss_pred ccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCC
Confidence 78889999999999999999999999999999999999999999999999999999999999887654211 12335
Q ss_pred CeEEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEE
Q 013858 195 PLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVI 274 (435)
Q Consensus 195 ~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iI 274 (435)
+++||++|+++|+.|+.+++++++... ++.+..++||.....+...+..+++|+|+||++|.+.+......+.++++||
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lV 179 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNT-PLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIV 179 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTS-SCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEE
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEE
Confidence 789999999999999999999998765 6888999999988887777888899999999999999988778889999999
Q ss_pred EecCCcccCCCCHHHHHHHHHh--CCC--CCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCCCCCceEEE
Q 013858 275 LDEADRMLDMGFEPQIREVMQN--LPD--KHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQI 343 (435)
Q Consensus 275 iDEah~~~~~~~~~~i~~i~~~--~~~--~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~ 343 (435)
|||||++.+.+|...+..++.. ++. +.|+++||||+++.+..+++.++.+|+.+.++.......+++|.
T Consensus 180 iDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~q~ 252 (253)
T 1wrb_A 180 LDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGSTSDSIKQE 252 (253)
T ss_dssp EETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC------------
T ss_pred EeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCCCCcCCceec
Confidence 9999999999999999999985 344 68999999999999999999999999999988766655555554
No 24
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=3.3e-37 Score=283.07 Aligned_cols=208 Identities=38% Similarity=0.680 Sum_probs=190.3
Q ss_pred CCCCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeE
Q 013858 118 APIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLA 197 (435)
Q Consensus 118 ~~~~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~ 197 (435)
.+..+|+++++++.+.+.|..+|+..|+++|.++++.++.|+++++++|||+|||++|++|++..+... ..++++
T Consensus 40 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~-----~~~~~~ 114 (249)
T 3ber_A 40 EETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLET-----PQRLFA 114 (249)
T ss_dssp HHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHS-----CCSSCE
T ss_pred cccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcC-----CCCceE
Confidence 345679999999999999999999999999999999999999999999999999999999999887663 235789
Q ss_pred EEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHc-CCCCCCCceEEEEe
Q 013858 198 LVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQ-GNTSLSRVSFVILD 276 (435)
Q Consensus 198 lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~-~~~~l~~~~~iIiD 276 (435)
||++|+++|+.|+++.+++++... ++++..++||.....+...+..+++|+|+||++|.+.+.. ..+.+.++++||||
T Consensus 115 lil~Ptr~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViD 193 (249)
T 3ber_A 115 LVLTPTRELAFQISEQFEALGSSI-GVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMD 193 (249)
T ss_dssp EEECSSHHHHHHHHHHHHHHHGGG-TCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEEC
T ss_pred EEEeCCHHHHHHHHHHHHHHhccC-CeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEc
Confidence 999999999999999999998765 6899999999988887777888899999999999998876 45678899999999
Q ss_pred cCCcccCCCCHHHHHHHHHhCCCCCeEEEEcccccHHHHHHHHHHcCCCeEEEeC
Q 013858 277 EADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVG 331 (435)
Q Consensus 277 Eah~~~~~~~~~~i~~i~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~ 331 (435)
|||++.+.+|...+..++..+++++|+++||||++..++.+++.++.+|+.+.++
T Consensus 194 Eah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v~ 248 (249)
T 3ber_A 194 EADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS 248 (249)
T ss_dssp SHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEECC
T ss_pred ChhhhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEec
Confidence 9999999999999999999999999999999999999999999999999988654
No 25
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=4.5e-37 Score=274.18 Aligned_cols=203 Identities=34% Similarity=0.640 Sum_probs=187.0
Q ss_pred CCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEE
Q 013858 121 ESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 200 (435)
Q Consensus 121 ~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil 200 (435)
.+|+++++++.+++.+..+|+..|+++|.++++.++.|+++++++|||+|||++|++|++..+... ..++++||+
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~-----~~~~~~lil 77 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLK-----KDNIQAMVI 77 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTT-----SCSCCEEEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhccc-----CCCeeEEEE
Confidence 469999999999999999999999999999999999999999999999999999999999876432 235789999
Q ss_pred ccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCc
Q 013858 201 APTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADR 280 (435)
Q Consensus 201 ~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~ 280 (435)
+|+++|+.|+.+.+++++...+++.+..++|+.........+..+++|+|+||++|.+.+.++...+.++++|||||||+
T Consensus 78 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~ 157 (206)
T 1vec_A 78 VPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADK 157 (206)
T ss_dssp CSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHH
T ss_pred eCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHH
Confidence 99999999999999999887667899999999998887777788899999999999999988777889999999999999
Q ss_pred ccCCCCHHHHHHHHHhCCCCCeEEEEcccccHHHHHHHHHHcCCCeEE
Q 013858 281 MLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQV 328 (435)
Q Consensus 281 ~~~~~~~~~i~~i~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i 328 (435)
+.+.+|...+..++..++++.|+++||||+|..+..+++.++.+|+.+
T Consensus 158 ~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 158 LLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp HTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred hHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 999999999999999999899999999999999999999999999765
No 26
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=1.9e-38 Score=333.33 Aligned_cols=283 Identities=17% Similarity=0.211 Sum_probs=216.6
Q ss_pred CcccCC--CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEE
Q 013858 122 SFTDMC--LHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALV 199 (435)
Q Consensus 122 ~~~~~~--l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~li 199 (435)
+|++++ +++.+.+.++.+||..|+++|.++++.+..+++++++||||||||++|.+|++..+.. +++++|
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~--------~~~~l~ 73 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK--------GGKSLY 73 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT--------TCCEEE
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh--------CCcEEE
Confidence 477888 9999999999999999999999999999999999999999999999999999987654 578999
Q ss_pred EccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCC
Q 013858 200 LAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEAD 279 (435)
Q Consensus 200 l~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah 279 (435)
++|+++||.|+++.++.+... ++++..++|+...... ...+++|+|+|||+|...+.+....+.++++|||||||
T Consensus 74 i~P~r~La~q~~~~~~~~~~~--g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H 148 (702)
T 2p6r_A 74 VVPLRALAGEKYESFKKWEKI--GLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIH 148 (702)
T ss_dssp EESSHHHHHHHHHHHTTTTTT--TCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGG
T ss_pred EeCcHHHHHHHHHHHHHHHhc--CCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeee
Confidence 999999999999999765532 6889999988654332 12368999999999999988766568899999999999
Q ss_pred cccCCCCHHHHHHHHHhC---CCCCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEE------EcChh
Q 013858 280 RMLDMGFEPQIREVMQNL---PDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILE------KVSEN 350 (435)
Q Consensus 280 ~~~~~~~~~~i~~i~~~~---~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~------~~~~~ 350 (435)
.+.+.++...+..++..+ +++.|+|+||||+++ ...+.+ |+..+. +..... ...+...+. .....
T Consensus 149 ~l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~-~l~~~~-~~~~~r---~~~l~~~~~~~~~~~~~~~~ 222 (702)
T 2p6r_A 149 LLDSEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAE-WLDADY-YVSDWR---PVPLVEGVLCEGTLELFDGA 222 (702)
T ss_dssp GGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHH-HTTCEE-EECCCC---SSCEEEEEECSSEEEEEETT
T ss_pred ecCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHH-HhCCCc-ccCCCC---CccceEEEeeCCeeeccCcc
Confidence 998888887777666554 578999999999985 444444 554332 221111 111222111 11110
Q ss_pred -------hHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhC--------------------------
Q 013858 351 -------EKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE-------------------------- 397 (435)
Q Consensus 351 -------~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~-------------------------- 397 (435)
.+...+.+.+ .+++++||||+++++++.+++.|...
T Consensus 223 ~~~~~~~~~~~~~~~~~-----------~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 291 (702)
T 2p6r_A 223 FSTSRRVKFEELVEECV-----------AENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKL 291 (702)
T ss_dssp EEEEEECCHHHHHHHHH-----------HTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHH
T ss_pred hhhhhhhhHHHHHHHHH-----------hcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHH
Confidence 0222222222 23457999999999999999999753
Q ss_pred ----CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 398 ----GLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 398 ----~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
+..+..+||++++++|..+++.|++|+.+|||||+++
T Consensus 292 ~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l 332 (702)
T 2p6r_A 292 AECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTL 332 (702)
T ss_dssp HHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTT
T ss_pred HHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHH
Confidence 2468899999999999999999999999999999986
No 27
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=2.5e-37 Score=280.75 Aligned_cols=210 Identities=29% Similarity=0.512 Sum_probs=185.4
Q ss_pred CCCCCCCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCC
Q 013858 115 PAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDG 194 (435)
Q Consensus 115 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~ 194 (435)
..|.+..+|+++++++.+.+.+..+||..|+++|.++++.++.|+++++++|||+|||++|++|++..+... ..+
T Consensus 18 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~-----~~~ 92 (230)
T 2oxc_A 18 VLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLE-----NLS 92 (230)
T ss_dssp ------CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT-----SCS
T ss_pred CCCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc-----CCC
Confidence 456677789999999999999999999999999999999999999999999999999999999999886542 236
Q ss_pred CeEEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEE
Q 013858 195 PLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVI 274 (435)
Q Consensus 195 ~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iI 274 (435)
+++||++|+++|+.|+.+++++++....++++..++|+.....+...+ .+++|+|+||++|.+.+..+.+.+.++++||
T Consensus 93 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lV 171 (230)
T 2oxc_A 93 TQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDYLNPGSIRLFI 171 (230)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTSSCGGGCCEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCCcccccCCEEE
Confidence 789999999999999999999998766678999999998877665544 4689999999999999888777888999999
Q ss_pred EecCCcccCCC-CHHHHHHHHHhCCCCCeEEEEcccccHHHHHHHHHHcCCCeEEEe
Q 013858 275 LDEADRMLDMG-FEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKV 330 (435)
Q Consensus 275 iDEah~~~~~~-~~~~i~~i~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~ 330 (435)
|||||++.+.+ |...+..++..+++..|+++||||+++.+..++..|+.+|+.+.+
T Consensus 172 iDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~ 228 (230)
T 2oxc_A 172 LDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRL 228 (230)
T ss_dssp ESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC
T ss_pred eCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEc
Confidence 99999999987 999999999999989999999999999999999999999988754
No 28
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=1.4e-37 Score=292.89 Aligned_cols=208 Identities=30% Similarity=0.496 Sum_probs=185.4
Q ss_pred CCCCCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC--CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCC
Q 013858 117 PAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSG--RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDG 194 (435)
Q Consensus 117 ~~~~~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~--~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~ 194 (435)
..+..+|++++|++.+++.|..+||..|+++|.++|+.++.| +|+++++|||||||++|++|++..+... ..+
T Consensus 88 ~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~-----~~~ 162 (300)
T 3fmo_B 88 LYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-----NKY 162 (300)
T ss_dssp CCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTT-----SCS
T ss_pred cCCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhcc-----CCC
Confidence 345778999999999999999999999999999999999987 8999999999999999999999887542 346
Q ss_pred CeEEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHc-CCCCCCCceEE
Q 013858 195 PLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQ-GNTSLSRVSFV 273 (435)
Q Consensus 195 ~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~-~~~~l~~~~~i 273 (435)
+++||++|||+||.|+++.++.++...+++.+...+|+...... ...+++|+|+|||+|++++.+ +.+.+.++++|
T Consensus 163 ~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~l 239 (300)
T 3fmo_B 163 PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVF 239 (300)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEE
T ss_pred ceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh---hcCCCCEEEECHHHHHHHHHhcCCCChhhceEE
Confidence 78999999999999999999999987777899999888754332 245679999999999999965 45678899999
Q ss_pred EEecCCcccC-CCCHHHHHHHHHhCCCCCeEEEEcccccHHHHHHHHHHcCCCeEEEeCC
Q 013858 274 ILDEADRMLD-MGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGK 332 (435)
Q Consensus 274 IiDEah~~~~-~~~~~~i~~i~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~ 332 (435)
||||||++++ .+|...+..++..+++.+|+++||||++..+..+++.++.+|+.|.+..
T Consensus 240 VlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~~ 299 (300)
T 3fmo_B 240 VLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKR 299 (300)
T ss_dssp EETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEECC
T ss_pred EEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEecC
Confidence 9999999987 6899999999999999999999999999999999999999999987754
No 29
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=1.4e-37 Score=307.35 Aligned_cols=268 Identities=20% Similarity=0.222 Sum_probs=209.5
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHH
Q 013858 132 IMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIE 211 (435)
Q Consensus 132 l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~ 211 (435)
+.+.++......|+++|.++++.++.|+++++++|||+|||++|++|++.... .++++||++||++|+.|++
T Consensus 10 ~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~--------~~~~~lil~Pt~~L~~q~~ 81 (414)
T 3oiy_A 10 FRSFFKKKFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR--------KGKKSALVFPTVTLVKQTL 81 (414)
T ss_dssp HHHHHHHHHSSCCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHT--------TTCCEEEEESSHHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhc--------CCCEEEEEECCHHHHHHHH
Confidence 33445543333799999999999999999999999999999999888777652 2688999999999999999
Q ss_pred HHHHHHhhcCCCceEEEEECCCCH---HHHHHHHhCC-CcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccC----
Q 013858 212 KEVKALSRSLDSFKTAIVVGGTNI---AEQRSELRGG-VSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLD---- 283 (435)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~-~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~---- 283 (435)
+.+++++. .++++..++|+... ..+...+..+ ++|+|+||++|.+.+.. +.+.++++|||||||++.+
T Consensus 82 ~~~~~~~~--~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~~~~ 157 (414)
T 3oiy_A 82 ERLQKLAD--EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRN 157 (414)
T ss_dssp HHHHHHCC--SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHCHHH
T ss_pred HHHHHHcc--CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhccch
Confidence 99999886 37899999999987 4445555544 99999999999887764 5677999999999986543
Q ss_pred -------CCCHHH-HHHHHHhCC-----------CCCeEEEEccc-ccHHHH-HHHHHHcCCCeEEEeCCCCCCCCceEE
Q 013858 284 -------MGFEPQ-IREVMQNLP-----------DKHQTLLFSAT-MPVEIE-ALAQEYLTDPVQVKVGKVSSPTANVIQ 342 (435)
Q Consensus 284 -------~~~~~~-i~~i~~~~~-----------~~~q~i~~SAT-l~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~i~~ 342 (435)
.+|... +..++..++ +..|+++|||| +|..+. .+...++. +...........+.+
T Consensus 158 ~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~ 233 (414)
T 3oiy_A 158 IDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITH 233 (414)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCCCCCCCSEEE
T ss_pred hhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCccccccccchh
Confidence 677777 778887765 78899999999 565544 33344433 223333444556777
Q ss_pred EEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEE-EecCCCCHHHHHHHHHHHH
Q 013858 343 ILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAV-ALHGGRNQSDRESALRDFR 421 (435)
Q Consensus 343 ~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~-~lh~~~~~~~R~~~~~~f~ 421 (435)
.+.... +...+...+.+. ++++||||+++..|+.+++.|+..|+.+. .+||. +|. ++.|+
T Consensus 234 ~~~~~~---~~~~l~~~l~~~----------~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~ 294 (414)
T 3oiy_A 234 VRISSR---SKEKLVELLEIF----------RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFK 294 (414)
T ss_dssp EEESSC---CHHHHHHHHHHH----------CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHH
T ss_pred eeeccC---HHHHHHHHHHHc----------CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHh
Confidence 766653 444555555441 14699999999999999999999999998 99985 444 99999
Q ss_pred cCCCcEEEE----cCCC
Q 013858 422 NGSTNILVF----SYKL 434 (435)
Q Consensus 422 ~g~~~VLVa----T~~L 434 (435)
+|+.+|||| |+++
T Consensus 295 ~g~~~vLvat~s~T~~~ 311 (414)
T 3oiy_A 295 VGKINILIGVQAYYGKL 311 (414)
T ss_dssp TTSCSEEEEECCTTCCC
T ss_pred CCCCeEEEEecCcCchh
Confidence 999999999 9986
No 30
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=2.7e-37 Score=281.76 Aligned_cols=211 Identities=36% Similarity=0.579 Sum_probs=178.3
Q ss_pred CCCCCCCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCC
Q 013858 115 PAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDG 194 (435)
Q Consensus 115 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~ 194 (435)
+.+.+..+|+++++++.+++.+..+||..|+++|.++++.++.|+++++++|||+|||++|++|++..+... ..+
T Consensus 24 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~-----~~~ 98 (237)
T 3bor_A 24 NWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE-----FKE 98 (237)
T ss_dssp ---CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTT-----SCS
T ss_pred CCCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc-----CCC
Confidence 456678889999999999999999999999999999999999999999999999999999999999886432 235
Q ss_pred CeEEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCC-CcEEEECcHHHHHHHHcCCCCCCCceEE
Q 013858 195 PLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGG-VSIVVATPGRFLDHLQQGNTSLSRVSFV 273 (435)
Q Consensus 195 ~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~I~v~T~~~l~~~l~~~~~~l~~~~~i 273 (435)
+++||++|+++|+.|+.+.+++++... ++.+..++|+.....+...+..+ ++|+|+||++|.+.+..+...+.++++|
T Consensus 99 ~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~l 177 (237)
T 3bor_A 99 TQALVLAPTRELAQQIQKVILALGDYM-GATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMF 177 (237)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTT-TCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEE
T ss_pred ceEEEEECcHHHHHHHHHHHHHHhhhc-CceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEE
Confidence 789999999999999999999998765 67888888888776665555544 8999999999999998877788999999
Q ss_pred EEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEcccccHHHHHHHHHHcCCCeEEEeC
Q 013858 274 ILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVG 331 (435)
Q Consensus 274 IiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~ 331 (435)
||||||++.+.+|...+..++..+++.+|+++||||+++.+..+++.|+.+|+.+.++
T Consensus 178 ViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~ 235 (237)
T 3bor_A 178 VLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVK 235 (237)
T ss_dssp EEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC--
T ss_pred EECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEec
Confidence 9999999999999999999999999999999999999999999999999999888654
No 31
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=3e-36 Score=274.74 Aligned_cols=213 Identities=36% Similarity=0.605 Sum_probs=186.9
Q ss_pred CCCCCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCe
Q 013858 117 PAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPL 196 (435)
Q Consensus 117 ~~~~~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~ 196 (435)
+.++.+|+++++++.+++.|..+|+..|+++|.++++.++.|+++++++|||+|||++|++|++..+..... ....+++
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~-~~~~~~~ 99 (236)
T 2pl3_A 21 VNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQW-TSTDGLG 99 (236)
T ss_dssp GGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTC-CGGGCCC
T ss_pred CcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcc-cccCCce
Confidence 456778999999999999999999999999999999999999999999999999999999999988765321 1223678
Q ss_pred EEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcC-CCCCCCceEEEE
Q 013858 197 ALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQG-NTSLSRVSFVIL 275 (435)
Q Consensus 197 ~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~-~~~l~~~~~iIi 275 (435)
+||++|+++|+.|+.+.+++++... ++.+..++|+.........+ .+++|+|+||++|.+.+... .+.+.++++|||
T Consensus 100 ~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lVi 177 (236)
T 2pl3_A 100 VLIISPTRELAYQTFEVLRKVGKNH-DFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLVL 177 (236)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTS-SCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEE
T ss_pred EEEEeCCHHHHHHHHHHHHHHhCCC-CeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEEE
Confidence 9999999999999999999998665 58889999988766655544 56899999999999888764 466889999999
Q ss_pred ecCCcccCCCCHHHHHHHHHhCCCCCeEEEEcccccHHHHHHHHHHcCCCeEEEeCC
Q 013858 276 DEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGK 332 (435)
Q Consensus 276 DEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~ 332 (435)
||||++.+++|...+..++..+++.+|+++||||+++.+..+++.++.+|..+.++.
T Consensus 178 DEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 234 (236)
T 2pl3_A 178 DEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVHE 234 (236)
T ss_dssp TTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECCC
T ss_pred eChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeCC
Confidence 999999999999999999999999999999999999999999999999999887653
No 32
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=2.7e-37 Score=278.39 Aligned_cols=208 Identities=31% Similarity=0.548 Sum_probs=185.0
Q ss_pred CCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEE
Q 013858 120 IESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALV 199 (435)
Q Consensus 120 ~~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~li 199 (435)
..+|+++++++.+.+.+..+|+..|+++|.++++.++.|+++++++|||+|||++|++|++..+... ..++++||
T Consensus 3 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~-----~~~~~~li 77 (219)
T 1q0u_A 3 ETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPE-----RAEVQAVI 77 (219)
T ss_dssp -CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTT-----SCSCCEEE
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhC-----cCCceEEE
Confidence 3569999999999999999999999999999999999999999999999999999999999886542 23678999
Q ss_pred EccChhhHHHHHHHHHHHhhcCC---CceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEe
Q 013858 200 LAPTRELAQQIEKEVKALSRSLD---SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILD 276 (435)
Q Consensus 200 l~P~r~la~q~~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiD 276 (435)
++||++|+.|+.+.+++++...+ ++.+..++|+.........+..+++|+|+||++|.+.+..+...+.++++||||
T Consensus 78 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViD 157 (219)
T 1q0u_A 78 TAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVD 157 (219)
T ss_dssp ECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEEC
T ss_pred EcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEc
Confidence 99999999999999999986542 578888888886665544455678999999999999998877788899999999
Q ss_pred cCCcccCCCCHHHHHHHHHhCCCCCeEEEEcccccHHHHHHHHHHcCCCeEEEeCC
Q 013858 277 EADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGK 332 (435)
Q Consensus 277 Eah~~~~~~~~~~i~~i~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~ 332 (435)
|||++.++++...+..++..+++++|+++||||++..+..+++.++.+|..+.+..
T Consensus 158 Eah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~ 213 (219)
T 1q0u_A 158 EADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLE 213 (219)
T ss_dssp SHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC-
T ss_pred CchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEeec
Confidence 99999999999999999999998999999999999999999999999999887654
No 33
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=1.5e-36 Score=274.43 Aligned_cols=211 Identities=36% Similarity=0.587 Sum_probs=181.7
Q ss_pred CCCCCCCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCC
Q 013858 115 PAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDG 194 (435)
Q Consensus 115 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~ 194 (435)
..+.++.+|+++++++.+++.+..+|+..|+++|.++++.++.|+++++++|||+|||++|++|++..+... ..+
T Consensus 8 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~-----~~~ 82 (224)
T 1qde_A 8 NYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS-----VKA 82 (224)
T ss_dssp SCCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT-----CCS
T ss_pred ccCcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhcc-----CCC
Confidence 556778889999999999999999999999999999999999999999999999999999999999886442 236
Q ss_pred CeEEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEE
Q 013858 195 PLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVI 274 (435)
Q Consensus 195 ~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iI 274 (435)
+++||++|+++|+.|+.+.+++++... ++++..++|+.........+.. ++|+|+||++|.+.+......+.++++||
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~~~~~~~~~iV 160 (224)
T 1qde_A 83 PQALMLAPTRELALQIQKVVMALAFHM-DIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRRFRTDKIKMFI 160 (224)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTS-CCCEEEECC----------CTT-CSEEEECHHHHHHHHHTTSSCCTTCCEEE
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccc-CceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhCCcchhhCcEEE
Confidence 789999999999999999999998765 6888889998876665544443 89999999999999988778889999999
Q ss_pred EecCCcccCCCCHHHHHHHHHhCCCCCeEEEEcccccHHHHHHHHHHcCCCeEEEeCC
Q 013858 275 LDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGK 332 (435)
Q Consensus 275 iDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~ 332 (435)
|||||++.+.++...+..++..+++..|+++||||+++.+..+++.|+.+|+.+.+..
T Consensus 161 iDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~ 218 (224)
T 1qde_A 161 LDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKK 218 (224)
T ss_dssp EETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC---
T ss_pred EcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 9999999999999999999999999999999999999999999999999998886654
No 34
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=3.9e-36 Score=268.29 Aligned_cols=205 Identities=46% Similarity=0.723 Sum_probs=185.1
Q ss_pred CcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEc
Q 013858 122 SFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 201 (435)
Q Consensus 122 ~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~ 201 (435)
+|+++++++.+.+.+..+|+..|+++|.++++.+++|+++++++|||+|||++|++|++..+.... ....++++||++
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~--~~~~~~~~lil~ 79 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQ--ERGRKPRALVLT 79 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCC--CTTCCCSEEEEC
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhcc--ccCCCCcEEEEE
Confidence 589999999999999999999999999999999999999999999999999999999998865421 123468899999
Q ss_pred cChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcc
Q 013858 202 PTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRM 281 (435)
Q Consensus 202 P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~ 281 (435)
|+++|+.|+.+.+++++. .+++..++|+.....+...+..+++|+|+||+++.+.+..+...+.++++||+||||++
T Consensus 80 P~~~L~~q~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~ 156 (207)
T 2gxq_A 80 PTRELALQVASELTAVAP---HLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEM 156 (207)
T ss_dssp SSHHHHHHHHHHHHHHCT---TSCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHH
T ss_pred CCHHHHHHHHHHHHHHhh---cceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHh
Confidence 999999999999999874 37788899998877777777778999999999999999887788999999999999999
Q ss_pred cCCCCHHHHHHHHHhCCCCCeEEEEcccccHHHHHHHHHHcCCCeEEEeC
Q 013858 282 LDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVG 331 (435)
Q Consensus 282 ~~~~~~~~i~~i~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~ 331 (435)
.+.++...+..++..++++.|+++||||+++.++.+++.|+.+|+.+.++
T Consensus 157 ~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~~ 206 (207)
T 2gxq_A 157 LSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINVI 206 (207)
T ss_dssp HHTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEECC
T ss_pred hccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEcC
Confidence 99999999999999999999999999999999999999999999887653
No 35
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.8e-36 Score=277.80 Aligned_cols=230 Identities=31% Similarity=0.531 Sum_probs=192.9
Q ss_pred HHHHHHHHcCceEEecCCCCCCCCCCCCcccC----CCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCc
Q 013858 95 QIEEVRLRLNVDVTVASGSVPAPAPIESFTDM----CLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSG 170 (435)
Q Consensus 95 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~----~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsG 170 (435)
++..++...++.+.+. +.|.|+.+|+++ ++++.+++.+..+||..|+++|.++++.++.|+++++++|||+|
T Consensus 3 ~~~~~~~~~~i~~~~~----~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsG 78 (245)
T 3dkp_A 3 KINFLRNKHKIHVQGT----DLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSG 78 (245)
T ss_dssp HHHHHHHHTTEEEESS----SCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSC
T ss_pred hHHHHHHhCceEecCC----CCCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCc
Confidence 4567777888877754 788999999987 89999999999999999999999999999999999999999999
Q ss_pred hhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHH-HHHhCCCcEE
Q 013858 171 KTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQR-SELRGGVSIV 249 (435)
Q Consensus 171 KT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~I~ 249 (435)
||++|++|++..+... ...++++||++|+++|+.|+++.+++++... ++++..+.|+....... .....+++|+
T Consensus 79 KT~~~~l~~l~~l~~~----~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~I~ 153 (245)
T 3dkp_A 79 KTLAFSIPILMQLKQP----ANKGFRALIISPTRELASQIHRELIKISEGT-GFRIHMIHKAAVAAKKFGPKSSKKFDIL 153 (245)
T ss_dssp HHHHHHHHHHHHHCSC----CSSSCCEEEECSSHHHHHHHHHHHHHHTTTS-CCCEECCCHHHHHHTTTSTTSCCCCCEE
T ss_pred HHHHHHHHHHHHHhhc----ccCCceEEEEeCCHHHHHHHHHHHHHHhccc-CceEEEEecCccHHHHhhhhhcCCCCEE
Confidence 9999999999887542 2346789999999999999999999998765 57777666554222111 1124568999
Q ss_pred EECcHHHHHHHHcC--CCCCCCceEEEEecCCcccC---CCCHHHHHHHHHhC-CCCCeEEEEcccccHHHHHHHHHHcC
Q 013858 250 VATPGRFLDHLQQG--NTSLSRVSFVILDEADRMLD---MGFEPQIREVMQNL-PDKHQTLLFSATMPVEIEALAQEYLT 323 (435)
Q Consensus 250 v~T~~~l~~~l~~~--~~~l~~~~~iIiDEah~~~~---~~~~~~i~~i~~~~-~~~~q~i~~SATl~~~~~~~~~~~~~ 323 (435)
|+||++|.+.+... ...+.++++|||||||++.+ .+|...+..++..+ +++.|+++||||+|..++.+++.++.
T Consensus 154 v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~ 233 (245)
T 3dkp_A 154 VTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLD 233 (245)
T ss_dssp EECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSS
T ss_pred EECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCC
Confidence 99999999998775 46788999999999999887 56888888888776 45789999999999999999999999
Q ss_pred CCeEEEeCCC
Q 013858 324 DPVQVKVGKV 333 (435)
Q Consensus 324 ~~~~i~~~~~ 333 (435)
+|+.+.++..
T Consensus 234 ~p~~i~~~~~ 243 (245)
T 3dkp_A 234 NVISVSIGAR 243 (245)
T ss_dssp SCEEEEECC-
T ss_pred CCEEEEeCCC
Confidence 9999988764
No 36
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=7.1e-36 Score=276.28 Aligned_cols=203 Identities=38% Similarity=0.619 Sum_probs=179.3
Q ss_pred CcccCC--CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEE
Q 013858 122 SFTDMC--LHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALV 199 (435)
Q Consensus 122 ~~~~~~--l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~li 199 (435)
+|++++ +++.+++.+..+||..|+++|.++++.++.|+++++++|||+|||++|++|++..+...... ...++++||
T Consensus 53 ~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~-~~~~~~~li 131 (262)
T 3ly5_A 53 SFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFM-PRNGTGVLI 131 (262)
T ss_dssp CC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCC-GGGCCCEEE
T ss_pred ChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhcccc-ccCCceEEE
Confidence 366665 99999999999999999999999999999999999999999999999999999987763211 123678999
Q ss_pred EccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcC-CCCCCCceEEEEecC
Q 013858 200 LAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQG-NTSLSRVSFVILDEA 278 (435)
Q Consensus 200 l~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~-~~~l~~~~~iIiDEa 278 (435)
++||++||.|+++.+++++... +..+..++|+.........+..+++|+|+||++|.+.+... .+.+.++++||||||
T Consensus 132 l~Pt~~La~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEa 210 (262)
T 3ly5_A 132 LSPTRELAMQTFGVLKELMTHH-VHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEA 210 (262)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTC-CSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSH
T ss_pred EeCCHHHHHHHHHHHHHHHhhc-CceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcCh
Confidence 9999999999999999998765 68889999999988887778778999999999999888765 367889999999999
Q ss_pred CcccCCCCHHHHHHHHHhCCCCCeEEEEcccccHHHHHHHHHHcCCCe
Q 013858 279 DRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPV 326 (435)
Q Consensus 279 h~~~~~~~~~~i~~i~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~ 326 (435)
|++.+++|...+..++..+++.+|+++||||+++.++.+++.++.++.
T Consensus 211 h~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 211 DRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp HHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred HHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999999999987654
No 37
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=4.9e-36 Score=307.21 Aligned_cols=169 Identities=21% Similarity=0.233 Sum_probs=132.0
Q ss_pred CCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHh
Q 013858 139 HEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (435)
Q Consensus 139 ~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~ 218 (435)
++...|+++|.++++.++.|+++++++|||+|||++|++|++..+.... ...++++||++|+++|+.|+.+.+++++
T Consensus 3 ~~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~---~~~~~~~lil~P~~~L~~q~~~~~~~~~ 79 (556)
T 4a2p_A 3 METKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP---AGRKAKVVFLATKVPVYEQQKNVFKHHF 79 (556)
T ss_dssp -----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC---SSCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCc---ccCCCeEEEEeCCHHHHHHHHHHHHHHh
Confidence 3456899999999999999999999999999999999999988876532 1226789999999999999999999998
Q ss_pred hcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCC-CCCCceEEEEecCCcccCCCCHHHHH-HHHHh
Q 013858 219 RSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNT-SLSRVSFVILDEADRMLDMGFEPQIR-EVMQN 296 (435)
Q Consensus 219 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~-~l~~~~~iIiDEah~~~~~~~~~~i~-~i~~~ 296 (435)
... ++++..++|+.........+..+++|+|+||++|.+.+..+.+ .+.++++|||||||++.+.+....+. .++..
T Consensus 80 ~~~-~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~ 158 (556)
T 4a2p_A 80 ERQ-GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQ 158 (556)
T ss_dssp GGG-TCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHH
T ss_pred ccc-CceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHh
Confidence 765 6899999999876665556666789999999999999988766 78999999999999998876443332 22222
Q ss_pred ----CCCCCeEEEEccccc
Q 013858 297 ----LPDKHQTLLFSATMP 311 (435)
Q Consensus 297 ----~~~~~q~i~~SATl~ 311 (435)
..+..|+++||||++
T Consensus 159 ~~~~~~~~~~~l~lSAT~~ 177 (556)
T 4a2p_A 159 KFNSASQLPQILGLTASVG 177 (556)
T ss_dssp HHCC---CCEEEEEESCCC
T ss_pred hhcccCCCCeEEEEeCCcc
Confidence 135688999999994
No 38
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=2.6e-36 Score=317.52 Aligned_cols=174 Identities=18% Similarity=0.239 Sum_probs=137.9
Q ss_pred HHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHH
Q 013858 134 KDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKE 213 (435)
Q Consensus 134 ~~l~~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~ 213 (435)
..+..+|+..|+++|.+++++++.|+++|+++|||+|||++|++|++..+.... ...++++||++||++|+.|+.++
T Consensus 4 ~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~---~~~~~~~lvl~Pt~~L~~Q~~~~ 80 (696)
T 2ykg_A 4 SDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---QGQKGKVVFFANQIPVYEQNKSV 80 (696)
T ss_dssp ---CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSC---TTCCCCEEEECSSHHHHHHHHHH
T ss_pred CcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCc---cCCCCeEEEEECCHHHHHHHHHH
Confidence 456788999999999999999999999999999999999999999998876532 12246899999999999999999
Q ss_pred HHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCC-CCCCceEEEEecCCcccCCC-CHHHHH
Q 013858 214 VKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNT-SLSRVSFVILDEADRMLDMG-FEPQIR 291 (435)
Q Consensus 214 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~-~l~~~~~iIiDEah~~~~~~-~~~~i~ 291 (435)
+++++... ++++..++|+.....+...+..+++|+|+||++|++.+..+.+ .+.++++|||||||++.+.. +...+.
T Consensus 81 ~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~ 159 (696)
T 2ykg_A 81 FSKYFERH-GYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMF 159 (696)
T ss_dssp HHHHTTTT-TCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHH
T ss_pred HHHHhccC-CceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHH
Confidence 99998654 6899999998865544445556799999999999999987666 68899999999999887654 222222
Q ss_pred HHHHh-----CCCCCeEEEEccccc
Q 013858 292 EVMQN-----LPDKHQTLLFSATMP 311 (435)
Q Consensus 292 ~i~~~-----~~~~~q~i~~SATl~ 311 (435)
..+.. .++..++|+||||+.
T Consensus 160 ~~l~~~~~~~~~~~~~il~LTATp~ 184 (696)
T 2ykg_A 160 NYLDQKLGGSSGPLPQVIGLTASVG 184 (696)
T ss_dssp HHHHHHHTTCCSCCCEEEEEESCCC
T ss_pred HHHHHhhcccCCCCCeEEEEeCccc
Confidence 22222 245689999999996
No 39
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=1.3e-35 Score=267.54 Aligned_cols=206 Identities=32% Similarity=0.552 Sum_probs=182.5
Q ss_pred CCCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEE
Q 013858 119 PIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLAL 198 (435)
Q Consensus 119 ~~~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~l 198 (435)
...+|+++++++.+.+.|..+|+..|+++|.++++.++.|+++++++|||+|||++|++|++..+... ..++++|
T Consensus 12 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~-----~~~~~~l 86 (220)
T 1t6n_A 12 HSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV-----TGQVSVL 86 (220)
T ss_dssp --CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC-----TTCCCEE
T ss_pred cCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhcc-----CCCEEEE
Confidence 34569999999999999999999999999999999999999999999999999999999998875431 2346899
Q ss_pred EEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHh-CCCcEEEECcHHHHHHHHcCCCCCCCceEEEEec
Q 013858 199 VLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELR-GGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDE 277 (435)
Q Consensus 199 il~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDE 277 (435)
|++|+++|+.|+.+.++++....+++++..++|+.....+...+. ..++|+|+||+++.+.+......+.++++|||||
T Consensus 87 il~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDE 166 (220)
T 1t6n_A 87 VMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDE 166 (220)
T ss_dssp EECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEES
T ss_pred EEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcC
Confidence 999999999999999999987766789999999988776665554 4579999999999999888777889999999999
Q ss_pred CCcccC-CCCHHHHHHHHHhCCCCCeEEEEcccccHHHHHHHHHHcCCCeEEE
Q 013858 278 ADRMLD-MGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVK 329 (435)
Q Consensus 278 ah~~~~-~~~~~~i~~i~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~ 329 (435)
||++.+ .++...+..++..++++.|+++||||++..++.+++.|+.+|+.+.
T Consensus 167 ah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 167 CDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp HHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred HHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 999887 4788889999999988999999999999999999999999998774
No 40
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.1e-35 Score=312.96 Aligned_cols=267 Identities=21% Similarity=0.240 Sum_probs=206.3
Q ss_pred CCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHh
Q 013858 139 HEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (435)
Q Consensus 139 ~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~ 218 (435)
.+|. |+++|.++++.+..|+++++++|||+|||++|.++++..+.. ++++||++|+++|+.|+++.+++++
T Consensus 83 ~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~--------g~rvL~l~PtkaLa~Q~~~~l~~~~ 153 (1010)
T 2xgj_A 83 YPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN--------KQRVIYTSPIKALSNQKYRELLAEF 153 (1010)
T ss_dssp CSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHT--------TCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhcc--------CCeEEEECChHHHHHHHHHHHHHHh
Confidence 4554 999999999999999999999999999999999888877643 6789999999999999999998876
Q ss_pred hcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCCCHHHHHHHHHhCC
Q 013858 219 RSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLP 298 (435)
Q Consensus 219 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~ 298 (435)
. .+++++|+... ..+++|+|+||++|.+++.++...+.++++|||||||++.+.+++..+..++..++
T Consensus 154 ~-----~vglltGd~~~-------~~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~ 221 (1010)
T 2xgj_A 154 G-----DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLP 221 (1010)
T ss_dssp S-----CEEEECSSCEE-------CTTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSC
T ss_pred C-----CEEEEeCCCcc-------CCCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcC
Confidence 3 56778887643 24579999999999999888777889999999999999999999999999999999
Q ss_pred CCCeEEEEcccccHHHH--HHHHHHcCCCeEEEeCCCCCCCCceEEEEEEcC---------hh-----h-----------
Q 013858 299 DKHQTLLFSATMPVEIE--ALAQEYLTDPVQVKVGKVSSPTANVIQILEKVS---------EN-----E----------- 351 (435)
Q Consensus 299 ~~~q~i~~SATl~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~---------~~-----~----------- 351 (435)
+..|+|+||||++...+ .........+..+...... ...+.+++.... .. .
T Consensus 222 ~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~r--p~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 299 (1010)
T 2xgj_A 222 DKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFR--PTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISN 299 (1010)
T ss_dssp TTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCC--SSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC-
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCC--cccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhh
Confidence 99999999999986532 2223334556555443221 123333333211 00 0
Q ss_pred -------------------H--------HHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCC-----
Q 013858 352 -------------------K--------VDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGL----- 399 (435)
Q Consensus 352 -------------------k--------~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~----- 399 (435)
| ...+..++..... ....++||||+++..|+.++..|...++
T Consensus 300 ~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~------~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e 373 (1010)
T 2xgj_A 300 QIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWK------KKYNPVIVFSFSKRDCEELALKMSKLDFNSDDE 373 (1010)
T ss_dssp -----------------------------CHHHHHHHHHHH------HTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHH
T ss_pred hhcccccccccccccccccccccccccchHHHHHHHHHHHh------cCCCCEEEEECCHHHHHHHHHHHHhCCCCChHH
Confidence 0 1111112211111 2334799999999999999999976443
Q ss_pred ----------------------------------cEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 400 ----------------------------------HAVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 400 ----------------------------------~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
++..+||+|++.+|..+++.|++|..+|||||+++
T Consensus 374 ~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~l 442 (1010)
T 2xgj_A 374 KEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETF 442 (1010)
T ss_dssp HHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGG
T ss_pred HHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHh
Confidence 38999999999999999999999999999999986
No 41
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=9.3e-35 Score=297.53 Aligned_cols=167 Identities=20% Similarity=0.231 Sum_probs=137.1
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcC
Q 013858 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (435)
Q Consensus 142 ~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~ 221 (435)
..|+++|.++++.++.|+++++++|||+|||++|++|++..+.... ...++++||++|+++|+.|+.+.+++++...
T Consensus 3 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~---~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 79 (555)
T 3tbk_A 3 LKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---CGQKGKVVFFANQIPVYEQQATVFSRYFERL 79 (555)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC---SSCCCCEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcc---cCCCCEEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 4689999999999999999999999999999999999998876642 1236789999999999999999999998765
Q ss_pred CCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCC-CCCCceEEEEecCCcccCCCC-HHHHHHHHHhC--
Q 013858 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNT-SLSRVSFVILDEADRMLDMGF-EPQIREVMQNL-- 297 (435)
Q Consensus 222 ~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~-~l~~~~~iIiDEah~~~~~~~-~~~i~~i~~~~-- 297 (435)
++++..++|+.........+..+++|+|+||++|.+.+..+.+ .+.++++|||||||++.+.+. ...+...+...
T Consensus 80 -~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~ 158 (555)
T 3tbk_A 80 -GYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLG 158 (555)
T ss_dssp -TCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTS
T ss_pred -CcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhc
Confidence 6899999999876655555556789999999999999987666 688999999999999987753 23333333321
Q ss_pred ---CCCCeEEEEcccccH
Q 013858 298 ---PDKHQTLLFSATMPV 312 (435)
Q Consensus 298 ---~~~~q~i~~SATl~~ 312 (435)
.+..|+++||||++.
T Consensus 159 ~~~~~~~~~l~lSAT~~~ 176 (555)
T 3tbk_A 159 ESRDPLPQVVGLTASVGV 176 (555)
T ss_dssp SCCSCCCEEEEEESCCCC
T ss_pred cccCCCCeEEEEecCccc
Confidence 246799999999954
No 42
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=9.7e-35 Score=312.34 Aligned_cols=262 Identities=20% Similarity=0.225 Sum_probs=203.9
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcCC
Q 013858 143 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 222 (435)
Q Consensus 143 ~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~~ 222 (435)
.|+++|.++|+.++.|+++++++|||+|||++|++++...... ++++||++|+++|+.|+++.+++++ +
T Consensus 39 ~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~--------g~~vlvl~PtraLa~Q~~~~l~~~~---~ 107 (997)
T 4a4z_A 39 ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRN--------MTKTIYTSPIKALSNQKFRDFKETF---D 107 (997)
T ss_dssp CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHT--------TCEEEEEESCGGGHHHHHHHHHTTC----
T ss_pred CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhc--------CCeEEEEeCCHHHHHHHHHHHHHHc---C
Confidence 4899999999999999999999999999999998888776433 6789999999999999999988764 2
Q ss_pred CceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCe
Q 013858 223 SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQ 302 (435)
Q Consensus 223 ~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q 302 (435)
++.+..++|+... ...++|+|+||++|.+++......+.++++|||||||++.+++++..|..++..+++..|
T Consensus 108 ~~~v~~l~G~~~~-------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v~ 180 (997)
T 4a4z_A 108 DVNIGLITGDVQI-------NPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVK 180 (997)
T ss_dssp -CCEEEECSSCEE-------CTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTCE
T ss_pred CCeEEEEeCCCcc-------CCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcccCCC
Confidence 5788888888742 345799999999999999887777899999999999999999999999999999999999
Q ss_pred EEEEcccccHHHHHHHHHHc---CCCeEEEeCCCCCCCCceEEEEEE-------c-------------------------
Q 013858 303 TLLFSATMPVEIEALAQEYL---TDPVQVKVGKVSSPTANVIQILEK-------V------------------------- 347 (435)
Q Consensus 303 ~i~~SATl~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~i~~~~~~-------~------------------------- 347 (435)
+|+||||+++.. .+..++. ..++.+..... ....+.+++.. +
T Consensus 181 iIlLSAT~~n~~-ef~~~l~~~~~~~~~vi~~~~--r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 257 (997)
T 4a4z_A 181 FILLSATVPNTY-EFANWIGRTKQKNIYVISTPK--RPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKG 257 (997)
T ss_dssp EEEEECCCTTHH-HHHHHHHHHHTCCEEEEECSS--CSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC------
T ss_pred EEEEcCCCCChH-HHHHHHhcccCCceEEEecCC--CCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhcccccc
Confidence 999999997654 3444432 12332222111 11122222111 0
Q ss_pred -------------------------------------------------------------ChhhHHHHHHHHHHHHHHh
Q 013858 348 -------------------------------------------------------------SENEKVDRLLALLVEEAFL 366 (435)
Q Consensus 348 -------------------------------------------------------------~~~~k~~~l~~~l~~~~~~ 366 (435)
....+...++..+.+
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~---- 333 (997)
T 4a4z_A 258 APSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRK---- 333 (997)
T ss_dssp -----------------------------------------------------------CCCCTTHHHHHHHHHHH----
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHh----
Confidence 011222233333322
Q ss_pred hhccCCCCCcEEEEeCchHHHHHHHHHHHhCCC---------------------------------------cEEEecCC
Q 013858 367 AEKSCHPFPLTIVFVERKTRCDEVSEALVAEGL---------------------------------------HAVALHGG 407 (435)
Q Consensus 367 ~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~---------------------------------------~v~~lh~~ 407 (435)
....++||||+++++|+.++..|...++ ++..+||+
T Consensus 334 -----~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~g 408 (997)
T 4a4z_A 334 -----RELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGG 408 (997)
T ss_dssp -----TTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTT
T ss_pred -----CCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCC
Confidence 3446799999999999999999977655 58999999
Q ss_pred CCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 408 RNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 408 ~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
|++.+|..+++.|++|..+|||||+++
T Consensus 409 l~~~~R~~v~~~F~~G~~kVLvAT~~~ 435 (997)
T 4a4z_A 409 LLPIVKELIEILFSKGFIKVLFATETF 435 (997)
T ss_dssp SCHHHHHHHHHHHHTTCCSEEEECTHH
T ss_pred CCHHHHHHHHHHHHCCCCcEEEEchHh
Confidence 999999999999999999999999975
No 43
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=1.5e-34 Score=307.48 Aligned_cols=170 Identities=21% Similarity=0.233 Sum_probs=134.2
Q ss_pred HCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHH
Q 013858 138 FHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (435)
Q Consensus 138 ~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~ 217 (435)
.+|+..|+++|.++++.++.|+++|+++|||+|||++|++|++..+.... ...++++||++|+++|+.|+.+.++++
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~---~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~ 319 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP---AGRKAKVVFLATKVPVYEQQKNVFKHH 319 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC---SSCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhcc---ccCCCeEEEEeCCHHHHHHHHHHHHHh
Confidence 45788999999999999999999999999999999999999998876642 223678999999999999999999999
Q ss_pred hhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCC-CCCCceEEEEecCCcccCCCCHHHH-HHHHH
Q 013858 218 SRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNT-SLSRVSFVILDEADRMLDMGFEPQI-REVMQ 295 (435)
Q Consensus 218 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~-~l~~~~~iIiDEah~~~~~~~~~~i-~~i~~ 295 (435)
+... ++++..++|+.........+..+++|+|+||++|.+.+..+.+ .+.++++|||||||++.+.+....+ ..++.
T Consensus 320 ~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~ 398 (797)
T 4a2q_A 320 FERQ-GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLE 398 (797)
T ss_dssp HGGG-TCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHH
T ss_pred cccC-CceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHH
Confidence 8765 6899999999877766666667899999999999999987666 6889999999999998876533332 22222
Q ss_pred h----CCCCCeEEEEccccc
Q 013858 296 N----LPDKHQTLLFSATMP 311 (435)
Q Consensus 296 ~----~~~~~q~i~~SATl~ 311 (435)
. ..+..|+|+||||+.
T Consensus 399 ~~~~~~~~~~~~l~lSATp~ 418 (797)
T 4a2q_A 399 QKFNSASQLPQILGLTASVG 418 (797)
T ss_dssp HHHTTCCCCCEEEEEESCCC
T ss_pred HhhccCCCCCeEEEEcCCcc
Confidence 2 145688999999994
No 44
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=1.2e-34 Score=314.18 Aligned_cols=261 Identities=21% Similarity=0.233 Sum_probs=209.0
Q ss_pred HCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHH
Q 013858 138 FHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (435)
Q Consensus 138 ~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~ 217 (435)
..|| .|+++|.++++.++.|+|++++||||+|||++|+++++..+. .++++||++||++||.|++++++++
T Consensus 74 ~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~--------~~~~~Lil~PtreLa~Q~~~~l~~l 144 (1104)
T 4ddu_A 74 KFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR--------KGKKSALVFPTVTLVKQTLERLQKL 144 (1104)
T ss_dssp HSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHT--------TTCCEEEEESSHHHHHHHHHHHHTT
T ss_pred hcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHh--------cCCeEEEEechHHHHHHHHHHHHHh
Confidence 3577 699999999999999999999999999999988777666552 2688999999999999999999998
Q ss_pred hhcCCCceEEEEECCCCH---HHHHHHHhCC-CcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCccc----------C
Q 013858 218 SRSLDSFKTAIVVGGTNI---AEQRSELRGG-VSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRML----------D 283 (435)
Q Consensus 218 ~~~~~~~~~~~~~g~~~~---~~~~~~~~~~-~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~----------~ 283 (435)
+ . .++++..++|+... ..+...+..+ ++|+|+||++|++++.. +.+.++++|||||||++. +
T Consensus 145 ~-~-~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr~L~ 220 (1104)
T 4ddu_A 145 A-D-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLM 220 (1104)
T ss_dssp S-C-TTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHHHHH
T ss_pred h-C-CCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccchhhhH
Confidence 7 3 37899999999987 5566666665 99999999999887764 567789999999997654 4
Q ss_pred -CCCHHH-HHHHHHhCC-----------CCCeEEEEccc-ccHHHHH-HHHHHcCCCeEEEeCCCCCCCCceEEEEEEcC
Q 013858 284 -MGFEPQ-IREVMQNLP-----------DKHQTLLFSAT-MPVEIEA-LAQEYLTDPVQVKVGKVSSPTANVIQILEKVS 348 (435)
Q Consensus 284 -~~~~~~-i~~i~~~~~-----------~~~q~i~~SAT-l~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~ 348 (435)
+||... +..++..++ .+.|+++|||| .|..+.. +...++. +.+........++.+.+..+
T Consensus 221 ~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~~~~~~~i~~~~~~~- 295 (1104)
T 4ddu_A 221 MVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRISS- 295 (1104)
T ss_dssp TSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBCCCCCCCEEEEEESC-
T ss_pred hcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccCCCCcCCceeEEEec-
Confidence 788877 888888776 78999999999 5655542 3344433 33333444456677777666
Q ss_pred hhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEE-EecCCCCHHHHHHHHHHHHcCCCcE
Q 013858 349 ENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAV-ALHGGRNQSDRESALRDFRNGSTNI 427 (435)
Q Consensus 349 ~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~-~lh~~~~~~~R~~~~~~f~~g~~~V 427 (435)
.+...+.+.+... ++++||||++++.++.+++.|+..|+.+. .+|| +|.+ ++.|++|+.+|
T Consensus 296 --~k~~~L~~ll~~~----------~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~~G~~~V 357 (1104)
T 4ddu_A 296 --RSKEKLVELLEIF----------RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FEDFKVGKINI 357 (1104)
T ss_dssp --CCHHHHHHHHHHH----------CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHHHHHTSCSE
T ss_pred --CHHHHHHHHHHhc----------CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHHHHCCCCCE
Confidence 3455555555441 14699999999999999999999999998 9999 2555 99999999999
Q ss_pred EEE----cCCC
Q 013858 428 LVF----SYKL 434 (435)
Q Consensus 428 LVa----T~~L 434 (435)
||| |+++
T Consensus 358 LVatas~Tdvl 368 (1104)
T 4ddu_A 358 LIGVQAYYGKL 368 (1104)
T ss_dssp EEEETTTHHHH
T ss_pred EEEecCCCCee
Confidence 999 9865
No 45
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.9e-33 Score=314.93 Aligned_cols=292 Identities=15% Similarity=0.182 Sum_probs=211.4
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC-CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhh
Q 013858 128 LHPSIMKDIEFHEYTRPTSIQAQAMPVALSG-RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL 206 (435)
Q Consensus 128 l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~-~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~l 206 (435)
|.....+.++..+|..++|+|.++++.++++ +|++++||||||||++|.+|++..+.... +.++||++|+++|
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~------~~kavyi~P~raL 984 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSS------EGRCVYITPMEAL 984 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCT------TCCEEEECSCHHH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCC------CCEEEEEcChHHH
Confidence 4566778888889999999999999999864 67999999999999999999999887642 5689999999999
Q ss_pred HHHHHHHHHH-HhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCC--CCCCCceEEEEecCCcccC
Q 013858 207 AQQIEKEVKA-LSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGN--TSLSRVSFVILDEADRMLD 283 (435)
Q Consensus 207 a~q~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~--~~l~~~~~iIiDEah~~~~ 283 (435)
|.|.++.+++ |+... +++++.++|+...... ...+++|+|||||++..++.+.. ..++++++|||||+|++.+
T Consensus 985 a~q~~~~~~~~f~~~~-g~~V~~ltGd~~~~~~---~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d 1060 (1724)
T 4f92_B 985 AEQVYMDWYEKFQDRL-NKKVVLLTGETSTDLK---LLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGG 1060 (1724)
T ss_dssp HHHHHHHHHHHHTTTS-CCCEEECCSCHHHHHH---HHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGS
T ss_pred HHHHHHHHHHHhchhc-CCEEEEEECCCCcchh---hcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCC
Confidence 9999999965 55444 6889988887654322 23457999999999977765432 2367899999999998876
Q ss_pred CCCHHHHHHHH-------HhCCCCCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEEEcChh---hHH
Q 013858 284 MGFEPQIREVM-------QNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSEN---EKV 353 (435)
Q Consensus 284 ~~~~~~i~~i~-------~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~---~k~ 353 (435)
. .+..+..++ ..+++++|+|+||||+++ .+++++++-..+..+...........+..++...... .+.
T Consensus 1061 ~-rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N-~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~ 1138 (1724)
T 4f92_B 1061 E-NGPVLEVICSRMRYISSQIERPIRIVALSSSLSN-AKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRL 1138 (1724)
T ss_dssp T-THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTT-HHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHH
T ss_pred C-CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCC-HHHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhh
Confidence 4 454444333 345678999999999974 5556665543332222222222233344444433322 222
Q ss_pred HHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhC----------------------------------CC
Q 013858 354 DRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE----------------------------------GL 399 (435)
Q Consensus 354 ~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~----------------------------------~~ 399 (435)
..+.+.+....... .+.+++||||++++.|+.++..|... ..
T Consensus 1139 ~~~~~~~~~~i~~~----~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~ 1214 (1724)
T 4f92_B 1139 LSMAKPVYHAITKH----SPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLN 1214 (1724)
T ss_dssp HTTHHHHHHHHHHH----CSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHT
T ss_pred hhhcchHHHHHHHh----cCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhC
Confidence 22222222222111 45668999999999999988777421 24
Q ss_pred cEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCCC
Q 013858 400 HAVALHGGRNQSDRESALRDFRNGSTNILVFSYKLL 435 (435)
Q Consensus 400 ~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L~ 435 (435)
+++++||+|++.+|..+++.|++|.++|||||++|.
T Consensus 1215 GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA 1250 (1724)
T 4f92_B 1215 GVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLC 1250 (1724)
T ss_dssp TEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGS
T ss_pred CEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHH
Confidence 699999999999999999999999999999999873
No 46
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=7.1e-33 Score=278.38 Aligned_cols=277 Identities=21% Similarity=0.235 Sum_probs=201.4
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcCC
Q 013858 143 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 222 (435)
Q Consensus 143 ~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~~ 222 (435)
.|+++|.++++.++.+ ++++++|||+|||++++++++..+.. .++++||++|+++|+.||.++++++... +
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~-------~~~~~liv~P~~~L~~q~~~~~~~~~~~-~ 79 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK-------YGGKVLMLAPTKPLVLQHAESFRRLFNL-P 79 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH-------SCSCEEEECSSHHHHHHHHHHHHHHBCS-C
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc-------CCCeEEEEECCHHHHHHHHHHHHHHhCc-c
Confidence 6899999999999999 99999999999999998888877652 2578999999999999999999988632 3
Q ss_pred CceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCe
Q 013858 223 SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQ 302 (435)
Q Consensus 223 ~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q 302 (435)
...+..+.|+........ ...+++|+|+||+.|.+.+..+.+.+.++++|||||||++.+......+...+....+..+
T Consensus 80 ~~~v~~~~g~~~~~~~~~-~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~ 158 (494)
T 1wp9_A 80 PEKIVALTGEKSPEERSK-AWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPL 158 (494)
T ss_dssp GGGEEEECSCSCHHHHHH-HHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCC
T ss_pred hhheEEeeCCcchhhhhh-hccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCe
Confidence 458888888887665433 3345899999999999998877778899999999999998876555555555555566788
Q ss_pred EEEEcccccHH---HHHHHHHHcCCCeEEEeCCCCCC-----CCceEEEEEEc---------------------------
Q 013858 303 TLLFSATMPVE---IEALAQEYLTDPVQVKVGKVSSP-----TANVIQILEKV--------------------------- 347 (435)
Q Consensus 303 ~i~~SATl~~~---~~~~~~~~~~~~~~i~~~~~~~~-----~~~i~~~~~~~--------------------------- 347 (435)
+++||||+... +..+...+......+........ ...........
T Consensus 159 ~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (494)
T 1wp9_A 159 VIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGL 238 (494)
T ss_dssp EEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred EEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999743 33333332212111111100000 00011111111
Q ss_pred --------------------------------------------------------------------------------
Q 013858 348 -------------------------------------------------------------------------------- 347 (435)
Q Consensus 348 -------------------------------------------------------------------------------- 347 (435)
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 318 (494)
T 1wp9_A 239 LESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKE 318 (494)
T ss_dssp SSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred ccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhh
Confidence
Q ss_pred ---------------------ChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecC
Q 013858 348 ---------------------SENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHG 406 (435)
Q Consensus 348 ---------------------~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~ 406 (435)
....|...+.+.+.+.... .+++++||||+++..++.+++.|+..|+.+..+||
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~-----~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g 393 (494)
T 1wp9_A 319 IFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQR-----KQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVG 393 (494)
T ss_dssp HHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHH-----CTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECC
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhcc-----CCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEec
Confidence 1112333344444332211 34678999999999999999999999999999999
Q ss_pred --------CCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 407 --------GRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 407 --------~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
++++.+|..+++.|++|+.+|||||+++
T Consensus 394 ~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~ 429 (494)
T 1wp9_A 394 QASKENDRGLSQREQKLILDEFARGEFNVLVATSVG 429 (494)
T ss_dssp SSCC-------CCHHHHHHHHHHHTSCSEEEECGGG
T ss_pred cccccccccCCHHHHHHHHHHHhcCCceEEEECCcc
Confidence 9999999999999999999999999875
No 47
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=3.2e-34 Score=294.26 Aligned_cols=274 Identities=16% Similarity=0.179 Sum_probs=208.6
Q ss_pred HCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHH
Q 013858 138 FHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (435)
Q Consensus 138 ~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~ 217 (435)
.+|+ +|+++|..++|.++.|+ |..++||+|||++|.+|++...+. |+.++|++||++||.|.++.+..+
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~--------g~~vlVltptreLA~qd~e~~~~l 147 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT--------GKGVHVVTVNEYLASRDAEQMGKI 147 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT--------SSCEEEEESSHHHHHHHHHHHHHH
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHc--------CCCEEEEeCCHHHHHHHHHHHHHH
Confidence 5799 99999999999999999 999999999999999999865433 568999999999999999999999
Q ss_pred hhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHH-HHHHHcC------CCCCCCceEEEEecCCccc-CCC----
Q 013858 218 SRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQG------NTSLSRVSFVILDEADRML-DMG---- 285 (435)
Q Consensus 218 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l-~~~l~~~------~~~l~~~~~iIiDEah~~~-~~~---- 285 (435)
+..+ ++++.+++||.....+... .+++|+|+|||+| .+++... .+.++.+.++||||||+|+ +.+
T Consensus 148 ~~~l-gl~v~~i~gg~~~~~r~~~--~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tpl 224 (844)
T 1tf5_A 148 FEFL-GLTVGLNLNSMSKDEKREA--YAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPL 224 (844)
T ss_dssp HHHT-TCCEEECCTTSCHHHHHHH--HHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEE
T ss_pred Hhhc-CCeEEEEeCCCCHHHHHHh--cCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccch
Confidence 9887 7999999999887654433 3589999999999 5555432 3567899999999999877 654
Q ss_pred -----------CHHHHHHHHHhCC---------CCCeEE-----------------EEcccccHH---HHHH--HHHHcC
Q 013858 286 -----------FEPQIREVMQNLP---------DKHQTL-----------------LFSATMPVE---IEAL--AQEYLT 323 (435)
Q Consensus 286 -----------~~~~i~~i~~~~~---------~~~q~i-----------------~~SATl~~~---~~~~--~~~~~~ 323 (435)
|...+..++..++ +.+|++ ++|||.+.. +... +..++.
T Consensus 225 Iisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~ 304 (844)
T 1tf5_A 225 IISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQ 304 (844)
T ss_dssp EEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCC
T ss_pred hhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhh
Confidence 5678899999887 367877 899998643 3222 222222
Q ss_pred -CCeEE-------EeCCC--------------------------------------------------------------
Q 013858 324 -DPVQV-------KVGKV-------------------------------------------------------------- 333 (435)
Q Consensus 324 -~~~~i-------~~~~~-------------------------------------------------------------- 333 (435)
+.-.+ .++..
T Consensus 305 ~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~ 384 (844)
T 1tf5_A 305 KDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEF 384 (844)
T ss_dssp BTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHH
T ss_pred cCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHH
Confidence 11000 01000
Q ss_pred -------------CCCCCceE-EEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCC
Q 013858 334 -------------SSPTANVI-QILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGL 399 (435)
Q Consensus 334 -------------~~~~~~i~-~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~ 399 (435)
..+...+. +.+.+....+|...+.+.+...... +.++||||++++.++.|++.|+..|+
T Consensus 385 ~~iY~l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~-------~~pvLVft~s~~~se~Ls~~L~~~gi 457 (844)
T 1tf5_A 385 RNIYNMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMT-------GQPVLVGTVAVETSELISKLLKNKGI 457 (844)
T ss_dssp HHHHCCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHH-------TCCEEEEESCHHHHHHHHHHHHTTTC
T ss_pred HHHhCCceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhc-------CCcEEEEECCHHHHHHHHHHHHHCCC
Confidence 00000011 1244567788998888888664422 23599999999999999999999999
Q ss_pred cEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 400 HAVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 400 ~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
++..+||++.+.+|..+.+.|+.| .|+||||+.
T Consensus 458 ~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmA 490 (844)
T 1tf5_A 458 PHQVLNAKNHEREAQIIEEAGQKG--AVTIATNMA 490 (844)
T ss_dssp CCEEECSSCHHHHHHHHTTTTSTT--CEEEEETTS
T ss_pred CEEEeeCCccHHHHHHHHHcCCCC--eEEEeCCcc
Confidence 999999999888887666666555 799999974
No 48
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=1.1e-34 Score=314.52 Aligned_cols=260 Identities=18% Similarity=0.263 Sum_probs=204.0
Q ss_pred HHCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHH
Q 013858 137 EFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 216 (435)
Q Consensus 137 ~~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~ 216 (435)
..+||. | ++|.++|+.++.|+|++++||||||||+ |++|++..+... ++++||++||++||.|+++.+++
T Consensus 52 ~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~-------~~~~lil~PtreLa~Q~~~~l~~ 121 (1054)
T 1gku_B 52 KCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALK-------GKRCYVIFPTSLLVIQAAETIRK 121 (1054)
T ss_dssp TTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTT-------SCCEEEEESCHHHHHHHHHHHHH
T ss_pred HhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhc-------CCeEEEEeccHHHHHHHHHHHHH
Confidence 447999 9 9999999999999999999999999998 889998887652 67899999999999999999999
Q ss_pred HhhcCCCc----eEEEEECCCCHHHH---HHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCCCHHH
Q 013858 217 LSRSLDSF----KTAIVVGGTNIAEQ---RSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQ 289 (435)
Q Consensus 217 ~~~~~~~~----~~~~~~g~~~~~~~---~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~~~~~ 289 (435)
++... ++ ++..++|+.....+ ...+.. ++|+|+||++|++++.+ +.++++|||||||++++ +...
T Consensus 122 l~~~~-~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~--~~~~ 193 (1054)
T 1gku_B 122 YAEKA-GVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILK--ASKN 193 (1054)
T ss_dssp HHTTT-CCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHT--STHH
T ss_pred HHhhc-CCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhh--cccc
Confidence 98775 56 89999999887663 333445 99999999999987654 67999999999999988 4667
Q ss_pred HHHHHHhC-----------CCCCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHH
Q 013858 290 IREVMQNL-----------PDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLA 358 (435)
Q Consensus 290 i~~i~~~~-----------~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 358 (435)
+..++..+ +...|++++|||++.. ..+...++.++..+.+.........+.+.+. ...+...+..
T Consensus 194 ~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~---~~~k~~~L~~ 269 (1054)
T 1gku_B 194 VDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITVRNVEDVAV---NDESISTLSS 269 (1054)
T ss_dssp HHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCEEEEEE---SCCCTTTTHH
T ss_pred HHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCcCCceEEEe---chhHHHHHHH
Confidence 77777666 3467899999999877 5444444444433444443344455666655 2444444544
Q ss_pred HHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEE----cCCC
Q 013858 359 LLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVF----SYKL 434 (435)
Q Consensus 359 ~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVa----T~~L 434 (435)
++.. .++++||||+++++|+.+++.|+.. +.+..+||++. .+++.|++|+.+|||| ||++
T Consensus 270 ll~~----------~~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Tdv~ 333 (1054)
T 1gku_B 270 ILEK----------LGTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYGTL 333 (1054)
T ss_dssp HHTT----------SCSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC-----
T ss_pred HHhh----------cCCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCCee
Confidence 4432 1356999999999999999999988 99999999984 7899999999999999 8875
No 49
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=1.3e-33 Score=303.60 Aligned_cols=171 Identities=20% Similarity=0.230 Sum_probs=131.7
Q ss_pred HHCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHH
Q 013858 137 EFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 216 (435)
Q Consensus 137 ~~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~ 216 (435)
...++..|+++|.++++.++.|+++++++|||+|||++|++|++..+.... ...++++||++|+++|+.|+.+++++
T Consensus 242 ~l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~---~~~~~~vLvl~Pt~~L~~Q~~~~~~~ 318 (936)
T 4a2w_A 242 PVYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP---AGRKAKVVFLATKVPVYEQQKNVFKH 318 (936)
T ss_dssp ------CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCC---SSCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred cccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhcc---ccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 345678999999999999999999999999999999999999887765431 12257899999999999999999999
Q ss_pred HhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCC-CCCCceEEEEecCCcccCCCCHHH-HHHHH
Q 013858 217 LSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNT-SLSRVSFVILDEADRMLDMGFEPQ-IREVM 294 (435)
Q Consensus 217 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~-~l~~~~~iIiDEah~~~~~~~~~~-i~~i~ 294 (435)
++... ++++..++|+.....+...+..+++|+|+||++|.+.+..+.+ .+.++++|||||||++.+.+.... +..++
T Consensus 319 ~~~~~-~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~ 397 (936)
T 4a2w_A 319 HFERQ-GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYL 397 (936)
T ss_dssp HHHTT-TCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHH
T ss_pred Hhccc-CceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHH
Confidence 98765 6899999999876655555556689999999999999987666 688899999999999887653322 22333
Q ss_pred Hh----CCCCCeEEEEccccc
Q 013858 295 QN----LPDKHQTLLFSATMP 311 (435)
Q Consensus 295 ~~----~~~~~q~i~~SATl~ 311 (435)
.. ..+..|+++||||+.
T Consensus 398 ~~~~~~~~~~~~~l~LSATp~ 418 (936)
T 4a2w_A 398 EQKFNSASQLPQILGLTASVG 418 (936)
T ss_dssp HHHHTTCSCCCEEEEEESCCC
T ss_pred HHhhccCCCcCeEEEecCCcc
Confidence 22 145678999999994
No 50
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=4.6e-33 Score=284.91 Aligned_cols=273 Identities=18% Similarity=0.213 Sum_probs=185.7
Q ss_pred CCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHh
Q 013858 139 HEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (435)
Q Consensus 139 ~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~ 218 (435)
.| .+|+++|..+++.++.|+ |..++||+|||++|.+|++...+. +++++|++|||+||.|.++.+..++
T Consensus 71 lg-~~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~--------g~~vlVltPTreLA~Q~~e~~~~l~ 139 (853)
T 2fsf_A 71 FG-MRHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALT--------GKGVHVVTVNDYLAQRDAENNRPLF 139 (853)
T ss_dssp HS-CCCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTT--------SSCCEEEESSHHHHHHHHHHHHHHH
T ss_pred cC-CCCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHc--------CCcEEEEcCCHHHHHHHHHHHHHHH
Confidence 45 489999999999999998 999999999999999999876433 5789999999999999999999999
Q ss_pred hcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHH-HHHHHcC------CCCCCCceEEEEecCCccc-CCC-----
Q 013858 219 RSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQG------NTSLSRVSFVILDEADRML-DMG----- 285 (435)
Q Consensus 219 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l-~~~l~~~------~~~l~~~~~iIiDEah~~~-~~~----- 285 (435)
..+ ++++.+++||....... ...+++|+|+|||+| .+++... ...++++.++||||||+|+ +.+
T Consensus 140 ~~l-gl~v~~i~GG~~~~~r~--~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLI 216 (853)
T 2fsf_A 140 EFL-GLTVGINLPGMPAPAKR--EAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLI 216 (853)
T ss_dssp HHT-TCCEEECCTTCCHHHHH--HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEE
T ss_pred Hhc-CCeEEEEeCCCCHHHHH--HhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCccccc
Confidence 887 79999999998865433 334589999999999 6776643 2567899999999999887 543
Q ss_pred ----------CHHHHHHHHHhCCC--------------------CCeEE------------------------EEccccc
Q 013858 286 ----------FEPQIREVMQNLPD--------------------KHQTL------------------------LFSATMP 311 (435)
Q Consensus 286 ----------~~~~i~~i~~~~~~--------------------~~q~i------------------------~~SATl~ 311 (435)
|...+..++..+++ .+|++ ++|||.+
T Consensus 217 iSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~ 296 (853)
T 2fsf_A 217 ISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANI 296 (853)
T ss_dssp EEEC----------------------------------------------------------------------------
T ss_pred ccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccc
Confidence 55677777777764 45553 8899975
Q ss_pred HHHHHH-----HHHHcC--------C-----------------------------CeEEEeCCCCCCCCceE--------
Q 013858 312 VEIEAL-----AQEYLT--------D-----------------------------PVQVKVGKVSSPTANVI-------- 341 (435)
Q Consensus 312 ~~~~~~-----~~~~~~--------~-----------------------------~~~i~~~~~~~~~~~i~-------- 341 (435)
.....+ +..++. + +..+.+.........+.
T Consensus 297 ~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y 376 (853)
T 2fsf_A 297 MLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLY 376 (853)
T ss_dssp ------------------------------------------------------------CCCCCEEEEEEEHHHHHTTS
T ss_pred hHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhh
Confidence 421111 111110 0 01111111111111111
Q ss_pred ---------------------------------------EEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeC
Q 013858 342 ---------------------------------------QILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVE 382 (435)
Q Consensus 342 ---------------------------------------~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~ 382 (435)
+.+.++...+|...+.+.+.... ..+.++||||+
T Consensus 377 ~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~-------~~gqpvLVft~ 449 (853)
T 2fsf_A 377 EKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERT-------AKGQPVLVGTI 449 (853)
T ss_dssp SEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHH-------TTTCCEEEEES
T ss_pred hhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHh-------cCCCCEEEEEC
Confidence 12355677889998888886644 33456999999
Q ss_pred chHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 383 RKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 383 ~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
+++.++.|++.|++.|+++..+||++.+.+|..+.+.|+.| .|+||||+.
T Consensus 450 sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmA 499 (853)
T 2fsf_A 450 SIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMA 499 (853)
T ss_dssp SHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCC
T ss_pred cHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccc
Confidence 99999999999999999999999999888888888888888 799999974
No 51
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=5.4e-34 Score=300.04 Aligned_cols=167 Identities=20% Similarity=0.260 Sum_probs=126.4
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHH-HHHHHHHhhc
Q 013858 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQI-EKEVKALSRS 220 (435)
Q Consensus 142 ~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~-~~~~~~~~~~ 220 (435)
..|+++|.++++.++.|+++++++|||+|||++|++|++..+..... .+.++++||++|+++|+.|+ .+++++++..
T Consensus 6 ~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~--~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~ 83 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKK--ASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK 83 (699)
T ss_dssp -CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHH--HTCCCCBCCEESCSHHHHHHHHHTHHHHHTT
T ss_pred CCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccc--cCCCCeEEEEECCHHHHHHHHHHHHHHHcCc
Confidence 46899999999999999999999999999999999999887655311 11236799999999999999 9999998854
Q ss_pred CCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHH------HcCCCCCCCceEEEEecCCcccCCCC-HHHHHHH
Q 013858 221 LDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHL------QQGNTSLSRVSFVILDEADRMLDMGF-EPQIREV 293 (435)
Q Consensus 221 ~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l------~~~~~~l~~~~~iIiDEah~~~~~~~-~~~i~~i 293 (435)
.+++..++|+.........+..+++|+|+||++|.+.+ ....+.+.++++|||||||++...++ ...+..+
T Consensus 84 --~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~ 161 (699)
T 4gl2_A 84 --WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHY 161 (699)
T ss_dssp --TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHH
T ss_pred --CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHH
Confidence 48899999987655544555567999999999999887 34456788999999999998865442 2222222
Q ss_pred HHh----C---------CCCCeEEEEcccccH
Q 013858 294 MQN----L---------PDKHQTLLFSATMPV 312 (435)
Q Consensus 294 ~~~----~---------~~~~q~i~~SATl~~ 312 (435)
+.. . .+..++|+||||+..
T Consensus 162 l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~ 193 (699)
T 4gl2_A 162 LMQKLKNNRLKKENKPVIPLPQILGLTASPGV 193 (699)
T ss_dssp HHHHHHHHHHHC----CCCCCEEEEECSCCCC
T ss_pred HHhhhcccccccccccCCCCCEEEEecccccc
Confidence 221 1 155789999999976
No 52
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=6.7e-32 Score=294.37 Aligned_cols=275 Identities=19% Similarity=0.191 Sum_probs=208.2
Q ss_pred CCCHHHHHHH-HHCCCCCCcHHHHHHHHHHhc----CC--CEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEE
Q 013858 127 CLHPSIMKDI-EFHEYTRPTSIQAQAMPVALS----GR--DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALV 199 (435)
Q Consensus 127 ~l~~~l~~~l-~~~~~~~p~~~Q~~~i~~~~~----~~--~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~li 199 (435)
+++....+.+ ..++|. |+++|.++++.++. |+ +++++|+||+|||++|+++++..+.. +++++|
T Consensus 587 ~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~--------g~~vlv 657 (1151)
T 2eyq_A 587 KHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN--------HKQVAV 657 (1151)
T ss_dssp CCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT--------TCEEEE
T ss_pred CCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh--------CCeEEE
Confidence 4556666665 455665 69999999999986 66 89999999999999998888876543 679999
Q ss_pred EccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHH---HHHh-CCCcEEEECcHHHHHHHHcCCCCCCCceEEEE
Q 013858 200 LAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQR---SELR-GGVSIVVATPGRFLDHLQQGNTSLSRVSFVIL 275 (435)
Q Consensus 200 l~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~-~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIi 275 (435)
++||++||.|+++.++++.... ++++..+.+.....+.. ..+. +.++|+|+||+.| +....+.++++|||
T Consensus 658 lvPt~~La~Q~~~~~~~~~~~~-~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll-----~~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 658 LVPTTLLAQQHYDNFRDRFANW-PVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLL-----QSDVKFKDLGLLIV 731 (1151)
T ss_dssp ECSSHHHHHHHHHHHHHHSTTT-TCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHH-----HSCCCCSSEEEEEE
T ss_pred EechHHHHHHHHHHHHHHhhcC-CCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHH-----hCCccccccceEEE
Confidence 9999999999999998877654 57888888876655443 2233 3589999999765 23567899999999
Q ss_pred ecCCcccCCCCHHHHHHHHHhCCCCCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHH
Q 013858 276 DEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDR 355 (435)
Q Consensus 276 DEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~ 355 (435)
||||++ ......++..++...++++||||+++....+....+.++..+ .........+..++.........
T Consensus 732 DEaH~~-----g~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i--~~~~~~r~~i~~~~~~~~~~~i~-- 802 (1151)
T 2eyq_A 732 DEEHRF-----GVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSII--ATPPARRLAVKTFVREYDSMVVR-- 802 (1151)
T ss_dssp ESGGGS-----CHHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEEC--CCCCCBCBCEEEEEEECCHHHHH--
T ss_pred echHhc-----ChHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEE--ecCCCCccccEEEEecCCHHHHH--
Confidence 999984 345566666667788999999998776665555554443332 22222233455554444432222
Q ss_pred HHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhC--CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCC
Q 013858 356 LLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE--GLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYK 433 (435)
Q Consensus 356 l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~--~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~ 433 (435)
+.+.... ..+++++|||+++++++.+++.|++. ++.+..+||+|++.+|+.+++.|++|+.+|||||++
T Consensus 803 --~~il~~l-------~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v 873 (1151)
T 2eyq_A 803 --EAILREI-------LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTI 873 (1151)
T ss_dssp --HHHHHHH-------TTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESST
T ss_pred --HHHHHHH-------hcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCc
Confidence 2222222 34567999999999999999999987 789999999999999999999999999999999997
Q ss_pred C
Q 013858 434 L 434 (435)
Q Consensus 434 L 434 (435)
+
T Consensus 874 ~ 874 (1151)
T 2eyq_A 874 I 874 (1151)
T ss_dssp T
T ss_pred c
Confidence 5
No 53
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=4e-33 Score=292.83 Aligned_cols=292 Identities=17% Similarity=0.191 Sum_probs=213.4
Q ss_pred CCCCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhc-CCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCe
Q 013858 118 APIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVALS-GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPL 196 (435)
Q Consensus 118 ~~~~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~-~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~ 196 (435)
.++.+|.++++++.+.+.+..++ ..|++.|+++|+.++. +++++++||||+|||+ ++|++....... .+.+++
T Consensus 69 ~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~~---~~~g~~ 142 (773)
T 2xau_A 69 GKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEMP---HLENTQ 142 (773)
T ss_dssp SSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHCG---GGGTCE
T ss_pred CCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhccc---cCCCce
Confidence 45677999999999999999988 7899999999998885 5679999999999999 677774432211 112567
Q ss_pred EEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEe
Q 013858 197 ALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILD 276 (435)
Q Consensus 197 ~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiD 276 (435)
++|++|+|+|+.|+++.+........+..++....... ....+++|+|+|||++.+.+.. ...+.++++||||
T Consensus 143 ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~------~~~~~~~I~v~T~G~l~r~l~~-~~~l~~~~~lIlD 215 (773)
T 2xau_A 143 VACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFEN------KTSNKTILKYMTDGMLLREAME-DHDLSRYSCIILD 215 (773)
T ss_dssp EEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEE------ECCTTCSEEEEEHHHHHHHHHH-STTCTTEEEEEEC
T ss_pred EEecCchHHHHHHHHHHHHHHhCCchhheecceecccc------ccCCCCCEEEECHHHHHHHHhh-CccccCCCEEEec
Confidence 99999999999999887755432111222222111110 0124579999999999998876 4568999999999
Q ss_pred cCC-cccCCCCHHH-HHHHHHhCCCCCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHH
Q 013858 277 EAD-RMLDMGFEPQ-IREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVD 354 (435)
Q Consensus 277 Eah-~~~~~~~~~~-i~~i~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~ 354 (435)
|+| |.++.++... +..++ ...++.|+|+||||++. +.+ ..|+.+...+.+... ...+.+++......++..
T Consensus 216 Eah~R~ld~d~~~~~l~~l~-~~~~~~~iIl~SAT~~~--~~l-~~~~~~~~vi~v~gr---~~pv~~~~~~~~~~~~~~ 288 (773)
T 2xau_A 216 EAHERTLATDILMGLLKQVV-KRRPDLKIIIMSATLDA--EKF-QRYFNDAPLLAVPGR---TYPVELYYTPEFQRDYLD 288 (773)
T ss_dssp SGGGCCHHHHHHHHHHHHHH-HHCTTCEEEEEESCSCC--HHH-HHHTTSCCEEECCCC---CCCEEEECCSSCCSCHHH
T ss_pred CccccccchHHHHHHHHHHH-HhCCCceEEEEeccccH--HHH-HHHhcCCCcccccCc---ccceEEEEecCCchhHHH
Confidence 999 5766443333 33333 33467899999999964 333 345554444444322 235666665555666666
Q ss_pred HHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHh-----------CCCcEEEecCCCCHHHHHHHHHHHH--
Q 013858 355 RLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVA-----------EGLHAVALHGGRNQSDRESALRDFR-- 421 (435)
Q Consensus 355 ~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~-----------~~~~v~~lh~~~~~~~R~~~~~~f~-- 421 (435)
.++..+.+.... .+++++||||+++++|+.+++.|++ .++.+..+||++++++|..+++.|+
T Consensus 289 ~~l~~l~~~~~~-----~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~ 363 (773)
T 2xau_A 289 SAIRTVLQIHAT-----EEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPES 363 (773)
T ss_dssp HHHHHHHHHHHH-----SCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCC
T ss_pred HHHHHHHHHHHh-----cCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccc
Confidence 656555544332 3467899999999999999999985 5788999999999999999999999
Q ss_pred ---cCCCcEEEEcCCC
Q 013858 422 ---NGSTNILVFSYKL 434 (435)
Q Consensus 422 ---~g~~~VLVaT~~L 434 (435)
+|+.+||||||++
T Consensus 364 ~~~~g~~kVlVAT~ia 379 (773)
T 2xau_A 364 HNGRPGRKVVISTNIA 379 (773)
T ss_dssp SSSSCCEEEEEECTHH
T ss_pred cCCCCceEEEEeCcHH
Confidence 9999999999974
No 54
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=7.2e-33 Score=310.19 Aligned_cols=285 Identities=20% Similarity=0.250 Sum_probs=205.0
Q ss_pred CCCCCCcHHHHHHHHHHh-cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCC---CCCCCCeEEEEccChhhHHHHHHHH
Q 013858 139 HEYTRPTSIQAQAMPVAL-SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPV---GRGDGPLALVLAPTRELAQQIEKEV 214 (435)
Q Consensus 139 ~~~~~p~~~Q~~~i~~~~-~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~---~~~~~~~~lil~P~r~la~q~~~~~ 214 (435)
.||+.++++|.++++.++ .++|++++||||||||++|.++++..+...... ....+.++||++|+++||.|+++.+
T Consensus 75 ~g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l 154 (1724)
T 4f92_B 75 EGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSF 154 (1724)
T ss_dssp TTCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHH
Confidence 378999999999999987 467999999999999999999999988764321 1234678999999999999999999
Q ss_pred HHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCC--CCCCCceEEEEecCCcccCCCCHHHHHH
Q 013858 215 KALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGN--TSLSRVSFVILDEADRMLDMGFEPQIRE 292 (435)
Q Consensus 215 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~--~~l~~~~~iIiDEah~~~~~~~~~~i~~ 292 (435)
++..... ++++..++|+...... ...+++|+|||||++..++.+.. ..++++++|||||+|.+.+ +.+..+..
T Consensus 155 ~~~~~~~-gi~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~ 229 (1724)
T 4f92_B 155 GKRLATY-GITVAELTGDHQLCKE---EISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEA 229 (1724)
T ss_dssp HHHHTTT-TCCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHH
T ss_pred HHHHhhC-CCEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHH
Confidence 8877665 6899999998764332 12458999999999865554422 1367899999999997655 56665554
Q ss_pred HHH-------hCCCCCeEEEEcccccHHHHHHHHHHcCCC--eEEEeCCCCCCCCceEEEEEEcChh---hHHHHHHHHH
Q 013858 293 VMQ-------NLPDKHQTLLFSATMPVEIEALAQEYLTDP--VQVKVGKVSSPTANVIQILEKVSEN---EKVDRLLALL 360 (435)
Q Consensus 293 i~~-------~~~~~~q~i~~SATl~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~i~~~~~~~~~~---~k~~~l~~~l 360 (435)
++. .++++.|+|+||||+|+ .++++++.-.++ ....+... ..+..+.+.+..+... .+...+.+.+
T Consensus 230 ~l~rl~~~~~~~~~~~riI~LSATl~N-~~dvA~wL~~~~~~~~~~~~~~-~RPvpL~~~~~~~~~~~~~~~~~~~~~~~ 307 (1724)
T 4f92_B 230 LVARAIRNIEMTQEDVRLIGLSATLPN-YEDVATFLRVDPAKGLFYFDNS-FRPVPLEQTYVGITEKKAIKRFQIMNEIV 307 (1724)
T ss_dssp HHHHHHHHHHHHTCCCEEEEEECSCTT-HHHHHHHTTCCHHHHEEECCGG-GCSSCEEEECCEECCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCcEEEEecccCC-HHHHHHHhCCCCCCCeEEECCC-CccCccEEEEeccCCcchhhhhHHHHHHH
Confidence 443 35678999999999975 444554332221 11122221 2223445544333322 2222222222
Q ss_pred HHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhC-------------------------------------CCcEEE
Q 013858 361 VEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE-------------------------------------GLHAVA 403 (435)
Q Consensus 361 ~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~-------------------------------------~~~v~~ 403 (435)
...... ....+++||||++++.|+.+++.|.+. ..++++
T Consensus 308 ~~~v~~----~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~ 383 (1724)
T 4f92_B 308 YEKIME----HAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAI 383 (1724)
T ss_dssp HHHHTT----CCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEE
T ss_pred HHHHHH----HhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEE
Confidence 222211 134567999999999999999888541 245899
Q ss_pred ecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 404 LHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 404 lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
+||+|++++|..+++.|++|.++|||||++|
T Consensus 384 HHagL~~~~R~~vE~~F~~G~i~vlvaTsTL 414 (1724)
T 4f92_B 384 HHAGMTRVDRTLVEDLFADKHIQVLVSTATL 414 (1724)
T ss_dssp ECSSSCTHHHHHHHHHHHTTCCCEEEECHHH
T ss_pred EcCCCCHHHHHHHHHHHHCCCCeEEEEcchh
Confidence 9999999999999999999999999999876
No 55
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.4e-32 Score=286.96 Aligned_cols=273 Identities=21% Similarity=0.252 Sum_probs=198.3
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHHHhcC------CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccC
Q 013858 130 PSIMKDIEFHEYTRPTSIQAQAMPVALSG------RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPT 203 (435)
Q Consensus 130 ~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~------~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~ 203 (435)
..+.+.+..++| .|+++|.++++.++.+ .+++++|+||||||++|++|++..+.. +++++|++||
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~--------g~qvlvlaPt 426 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA--------GFQTAFMVPT 426 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH--------TSCEEEECSC
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc--------CCeEEEEeCc
Confidence 445555678899 8999999999999865 589999999999999999999988654 6789999999
Q ss_pred hhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHH---HHHhC-CCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCC
Q 013858 204 RELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQR---SELRG-GVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEAD 279 (435)
Q Consensus 204 r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~-~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah 279 (435)
++||.|+++.+++++... ++++..++|+....+.. ..+.. .++|+|+||+.+.+ ...+.++++|||||+|
T Consensus 427 r~La~Q~~~~l~~~~~~~-gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEaH 500 (780)
T 1gm5_A 427 SILAIQHYRRTVESFSKF-NIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQH 500 (780)
T ss_dssp HHHHHHHHHHHHHHHTCS-SCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCC
T ss_pred HHHHHHHHHHHHHHhhhc-CceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEecccc
Confidence 999999999999988665 68999999998876543 23333 58999999987743 4568899999999999
Q ss_pred cccCCCCHHHHHHHHHhCCCCCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHH
Q 013858 280 RMLDMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLAL 359 (435)
Q Consensus 280 ~~~~~~~~~~i~~i~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~ 359 (435)
++... . ...+.......++++||||+.+....+ .++.+.....+.........+... +....+...+.+.
T Consensus 501 r~g~~---q--r~~l~~~~~~~~vL~mSATp~p~tl~~--~~~g~~~~s~i~~~p~~r~~i~~~---~~~~~~~~~l~~~ 570 (780)
T 1gm5_A 501 RFGVK---Q--REALMNKGKMVDTLVMSATPIPRSMAL--AFYGDLDVTVIDEMPPGRKEVQTM---LVPMDRVNEVYEF 570 (780)
T ss_dssp CC----------CCCCSSSSCCCEEEEESSCCCHHHHH--HHTCCSSCEEECCCCSSCCCCEEC---CCCSSTHHHHHHH
T ss_pred hhhHH---H--HHHHHHhCCCCCEEEEeCCCCHHHHHH--HHhCCcceeeeeccCCCCcceEEE---EeccchHHHHHHH
Confidence 86321 1 122222334688999999986654333 233332111222211112223222 2223344555566
Q ss_pred HHHHHHhhhccCCCCCcEEEEeCchH--------HHHHHHHHHHh---CCCcEEEecCCCCHHHHHHHHHHHHcCCCcEE
Q 013858 360 LVEEAFLAEKSCHPFPLTIVFVERKT--------RCDEVSEALVA---EGLHAVALHGGRNQSDRESALRDFRNGSTNIL 428 (435)
Q Consensus 360 l~~~~~~~~~~~~~~~~~lVF~~~~~--------~~~~l~~~L~~---~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VL 428 (435)
+.+.. ..+++++|||+..+ .++.+++.|+. .++.+..+||+|++.+|+.+++.|++|+.+||
T Consensus 571 i~~~l-------~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~IL 643 (780)
T 1gm5_A 571 VRQEV-------MRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDIL 643 (780)
T ss_dssp HHHHT-------TTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBC
T ss_pred HHHHH-------hcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEE
Confidence 65543 34457999999764 47888899988 47899999999999999999999999999999
Q ss_pred EEcCCC
Q 013858 429 VFSYKL 434 (435)
Q Consensus 429 VaT~~L 434 (435)
|||+++
T Consensus 644 VaT~vi 649 (780)
T 1gm5_A 644 VSTTVI 649 (780)
T ss_dssp CCSSCC
T ss_pred EECCCC
Confidence 999986
No 56
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=2.5e-31 Score=272.38 Aligned_cols=274 Identities=17% Similarity=0.202 Sum_probs=211.8
Q ss_pred HCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHH
Q 013858 138 FHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (435)
Q Consensus 138 ~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~ 217 (435)
..|+ +|+++|..+++.++.|+ |+.++||+|||++|.+|++...+. |..++|++||++||.|.++.+..+
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~--------g~~v~VvTpTreLA~Qdae~m~~l 175 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA--------GNGVHIVTVNDYLAKRDSEWMGRV 175 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT--------TSCEEEEESSHHHHHHHHHHHHHH
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh--------CCCeEEEeCCHHHHHHHHHHHHHH
Confidence 4687 99999999999999998 999999999999999999866543 467999999999999999999999
Q ss_pred hhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHH-HHHHHcC------CCCCCCceEEEEecCCccc-CC-----
Q 013858 218 SRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQG------NTSLSRVSFVILDEADRML-DM----- 284 (435)
Q Consensus 218 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l-~~~l~~~------~~~l~~~~~iIiDEah~~~-~~----- 284 (435)
+..+ ++++++++||.......... +++|+|+||++| .+++... .+.++.+.++||||||+|+ +.
T Consensus 176 ~~~l-GLsv~~i~gg~~~~~r~~~y--~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPL 252 (922)
T 1nkt_A 176 HRFL-GLQVGVILATMTPDERRVAY--NADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPL 252 (922)
T ss_dssp HHHT-TCCEEECCTTCCHHHHHHHH--HSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCE
T ss_pred Hhhc-CCeEEEEeCCCCHHHHHHhc--CCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccce
Confidence 9887 79999999998865444333 589999999999 6666543 3567889999999999887 42
Q ss_pred ----------CCHHHHHHHHHhCC---------CCCeEE-----------------EEcccccHH---HHHH--HHHHcC
Q 013858 285 ----------GFEPQIREVMQNLP---------DKHQTL-----------------LFSATMPVE---IEAL--AQEYLT 323 (435)
Q Consensus 285 ----------~~~~~i~~i~~~~~---------~~~q~i-----------------~~SATl~~~---~~~~--~~~~~~ 323 (435)
+|...+..++..++ +..|++ ++|||.+.. +... +..++.
T Consensus 253 iiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~ 332 (922)
T 1nkt_A 253 IISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFS 332 (922)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCC
T ss_pred eecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhh
Confidence 47788999999998 678888 899998642 2222 222222
Q ss_pred -C-------CeEEEeCCC--------------------------------------------------------------
Q 013858 324 -D-------PVQVKVGKV-------------------------------------------------------------- 333 (435)
Q Consensus 324 -~-------~~~i~~~~~-------------------------------------------------------------- 333 (435)
+ ...+.+...
T Consensus 333 ~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef 412 (922)
T 1nkt_A 333 RDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAEL 412 (922)
T ss_dssp BTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHH
T ss_pred cccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHH
Confidence 1 111111110
Q ss_pred -------------CCCCCceE-EEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCC
Q 013858 334 -------------SSPTANVI-QILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGL 399 (435)
Q Consensus 334 -------------~~~~~~i~-~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~ 399 (435)
..+..... +.+.+....+|...+.+.+.+... .+.++||||++++.++.|++.|++.|+
T Consensus 413 ~~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~-------~gqpvLVft~Sie~sE~Ls~~L~~~Gi 485 (922)
T 1nkt_A 413 HEIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYA-------KGQPVLIGTTSVERSEYLSRQFTKRRI 485 (922)
T ss_dssp HHHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHH-------TTCCEEEEESCHHHHHHHHHHHHHTTC
T ss_pred HHHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHh-------cCCcEEEEECCHHHHHHHHHHHHHCCC
Confidence 00001111 124566788899999888876542 234699999999999999999999999
Q ss_pred cEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 400 HAVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 400 ~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
++..+||++.+.++..+.+.|+.| .|+||||+.
T Consensus 486 ~~~vLnak~~~rEa~iia~agr~G--~VtIATnmA 518 (922)
T 1nkt_A 486 PHNVLNAKYHEQEATIIAVAGRRG--GVTVATNMA 518 (922)
T ss_dssp CCEEECSSCHHHHHHHHHTTTSTT--CEEEEETTC
T ss_pred CEEEecCChhHHHHHHHHhcCCCC--eEEEecchh
Confidence 999999999877887778888877 799999974
No 57
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.97 E-value=8.4e-32 Score=273.03 Aligned_cols=267 Identities=13% Similarity=0.119 Sum_probs=193.7
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcC
Q 013858 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (435)
Q Consensus 142 ~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~ 221 (435)
..|+++|.++++.++.+++++++++||+|||++|+.+++..+... ++++||++|+++|+.|+.+++++++..
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~-------~~~vlvl~P~~~L~~Q~~~~~~~~~~~- 183 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY-------EGKILIIVPTTALTTQMADDFVDYRLF- 183 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHC-------SSEEEEEESSHHHHHHHHHHHHHTTSS-
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCC-------CCeEEEEECcHHHHHHHHHHHHHhhcC-
Confidence 489999999999999999999999999999999988888776541 358999999999999999999888644
Q ss_pred CCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCCCHHHHHHHHHhCCCCC
Q 013858 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKH 301 (435)
Q Consensus 222 ~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~ 301 (435)
++..+..+.|+.....+ ...+.+|+|+||+.|.+. ....+.++++|||||||++.+ ..+..++..+++..
T Consensus 184 ~~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~---~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~~ 253 (510)
T 2oca_A 184 SHAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCM 253 (510)
T ss_dssp CGGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTCC
T ss_pred CccceEEEecCCccccc---cccCCcEEEEeHHHHhhc---hhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccCc
Confidence 35788888888765443 446789999999976532 234567899999999999854 56778888888888
Q ss_pred eEEEEcccccHHHHHHH--HHHcCCCeEEEeCCCC------CCCCceEEEEEEcChh---------------------hH
Q 013858 302 QTLLFSATMPVEIEALA--QEYLTDPVQVKVGKVS------SPTANVIQILEKVSEN---------------------EK 352 (435)
Q Consensus 302 q~i~~SATl~~~~~~~~--~~~~~~~~~i~~~~~~------~~~~~i~~~~~~~~~~---------------------~k 352 (435)
++++||||++....... ..++ .+..+...... .....+.......+.. .+
T Consensus 254 ~~l~lSATp~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (510)
T 2oca_A 254 FKFGLSGSLRDGKANIMQYVGMF-GEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKR 332 (510)
T ss_dssp EEEEEESCGGGCSSCHHHHHHHH-CSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHH
T ss_pred EEEEEEeCCCCCcccHHHhHHhh-CCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHH
Confidence 99999999976643321 1222 23322222111 1111122222222211 12
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEc-
Q 013858 353 VDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVFS- 431 (435)
Q Consensus 353 ~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT- 431 (435)
...+.+.+.+... ..+.++||||+ .++++.+++.|++.+..+..+||++++.+|+.+++.|++|+.+|||||
T Consensus 333 ~~~l~~~l~~~~~------~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~ 405 (510)
T 2oca_A 333 NKWIAKLAIKLAQ------KDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASY 405 (510)
T ss_dssp HHHHHHHHHHHHT------TTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEH
T ss_pred HHHHHHHHHHHHh------cCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEc
Confidence 2233333333221 12334666666 899999999999998899999999999999999999999999999999
Q ss_pred CCC
Q 013858 432 YKL 434 (435)
Q Consensus 432 ~~L 434 (435)
+++
T Consensus 406 ~~~ 408 (510)
T 2oca_A 406 GVF 408 (510)
T ss_dssp HHH
T ss_pred Chh
Confidence 653
No 58
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.97 E-value=1.7e-32 Score=281.27 Aligned_cols=256 Identities=14% Similarity=0.143 Sum_probs=183.3
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChh
Q 013858 126 MCLHPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRE 205 (435)
Q Consensus 126 ~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~ 205 (435)
+++++.+.+.+... ...|+|+|+++++.++.|+++++++|||||||++|++|++..+... ++++||++|||+
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~-------~~~vLvl~Ptre 226 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKR-------RLRTLILAPTRV 226 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT-------TCCEEEEESSHH
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhC-------CCeEEEEcChHH
Confidence 44566655555443 4778899888899999999999999999999999999999887662 578999999999
Q ss_pred hHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCC
Q 013858 206 LAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG 285 (435)
Q Consensus 206 la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~ 285 (435)
||.|+.+.++. ..+. +.+.... .....+..+.++|.+.+.+.+.. ...+.++++|||||||++ +.+
T Consensus 227 La~Qi~~~l~~-------~~v~-~~~~~l~----~~~tp~~~i~~~t~~~l~~~l~~-~~~l~~~~~iViDEah~~-~~~ 292 (618)
T 2whx_A 227 VAAEMEEALRG-------LPIR-YQTPAVK----SDHTGREIVDLMCHATFTTRLLS-STRVPNYNLIVMDEAHFT-DPC 292 (618)
T ss_dssp HHHHHHHHTTT-------SCEE-ECCTTSS----CCCCSSSCEEEEEHHHHHHHHHH-CSSCCCCSEEEEESTTCC-SHH
T ss_pred HHHHHHHHhcC-------Ccee-Eecccce----eccCCCceEEEEChHHHHHHHhc-cccccCCeEEEEECCCCC-Ccc
Confidence 99999877652 2222 1111100 01123456888999999887766 356899999999999987 666
Q ss_pred CHHHHHHHHHhCC-CCCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHHHHHHH
Q 013858 286 FEPQIREVMQNLP-DKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEA 364 (435)
Q Consensus 286 ~~~~i~~i~~~~~-~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~ 364 (435)
+...+..++..++ +++|+|+||||++..+..+.. .++..+.+.... +. .+...++..+.+
T Consensus 293 ~~~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~~-------------~~-~~~~~ll~~l~~-- 353 (618)
T 2whx_A 293 SVAARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIEREI-------------PE-RSWNTGFDWITD-- 353 (618)
T ss_dssp HHHHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECCC-------------CS-SCCSSSCHHHHH--
T ss_pred HHHHHHHHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeecccC-------------CH-HHHHHHHHHHHh--
Confidence 7777777777664 678999999999876443222 133333222110 00 011112222221
Q ss_pred HhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 365 FLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 365 ~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
..+++||||+++++|+.+++.|+..++.+..+||+ +|.++++.|++|+.+||||||++
T Consensus 354 --------~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~ 411 (618)
T 2whx_A 354 --------YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDIS 411 (618)
T ss_dssp --------CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGG
T ss_pred --------CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHH
Confidence 13469999999999999999999999999999985 78889999999999999999986
No 59
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.97 E-value=5.9e-31 Score=261.88 Aligned_cols=242 Identities=13% Similarity=0.149 Sum_probs=171.4
Q ss_pred CCCCCcHHHHHHHHHHhcCCCE-EEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHh
Q 013858 140 EYTRPTSIQAQAMPVALSGRDL-LGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (435)
Q Consensus 140 ~~~~p~~~Q~~~i~~~~~~~~v-ii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~ 218 (435)
|+..|+|+|+ +++.++.++++ ++++|||||||++|++|++...... ++++||++|||+||.|+++.+..
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~-------~~~~lvl~Ptr~La~Q~~~~l~g-- 70 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLR-------RLRTLILAPTRVVAAEMEEALRG-- 70 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHTTT--
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhc-------CCcEEEECCCHHHHHHHHHHhcC--
Confidence 5778999985 79999998885 9999999999999999999876653 57899999999999999887642
Q ss_pred hcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCCCHHHHHHHHH-hC
Q 013858 219 RSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQ-NL 297 (435)
Q Consensus 219 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~~~~~i~~i~~-~~ 297 (435)
+.+....+.... ....+..|.++|++.+.+.+.. ...+.++++|||||||++ +.++...+..+.. ..
T Consensus 71 -----~~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~-~~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~ 138 (451)
T 2jlq_A 71 -----LPIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLS-STRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVE 138 (451)
T ss_dssp -----SCEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHH-CSCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHH
T ss_pred -----ceeeeeeccccc-----cCCCCceEEEEChHHHHHHhhC-cccccCCCEEEEeCCccC-CcchHHHHHHHHHhhc
Confidence 222221111100 1234467999999999888876 456889999999999976 3332322222222 23
Q ss_pred CCCCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcE
Q 013858 298 PDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLT 377 (435)
Q Consensus 298 ~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~ 377 (435)
++++|+++||||++.....+ +..++..+...... +.... ..+...+.+ ..+++
T Consensus 139 ~~~~~~i~~SAT~~~~~~~~---~~~~~~~~~~~~~~-p~~~~-------------~~~~~~l~~----------~~~~~ 191 (451)
T 2jlq_A 139 MGEAAAIFMTATPPGSTDPF---PQSNSPIEDIEREI-PERSW-------------NTGFDWITD----------YQGKT 191 (451)
T ss_dssp TTSCEEEEECSSCTTCCCSS---CCCSSCEEEEECCC-CSSCC-------------SSSCHHHHH----------CCSCE
T ss_pred CCCceEEEEccCCCccchhh---hcCCCceEecCccC-Cchhh-------------HHHHHHHHh----------CCCCE
Confidence 45789999999998644322 22333333332110 00000 001112211 13479
Q ss_pred EEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 378 IVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 378 lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
||||+++++|+.+++.|+..|+.+..+||++. +.+++.|++|+.+|||||+++
T Consensus 192 lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~ 244 (451)
T 2jlq_A 192 VWFVPSIKAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDIS 244 (451)
T ss_dssp EEECSSHHHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGG
T ss_pred EEEcCCHHHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHH
Confidence 99999999999999999999999999999764 579999999999999999975
No 60
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.96 E-value=2.2e-29 Score=252.77 Aligned_cols=246 Identities=20% Similarity=0.204 Sum_probs=175.1
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcC
Q 013858 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (435)
Q Consensus 142 ~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~ 221 (435)
..|+++|.++++.++.+++++++++||+|||++|+.++... +.++||++|+++|+.||.+++++|
T Consensus 92 ~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~-----------~~~~Lvl~P~~~L~~Q~~~~~~~~---- 156 (472)
T 2fwr_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----------STPTLIVVPTLALAEQWKERLGIF---- 156 (472)
T ss_dssp CCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH-----------CSCEEEEESSHHHHHHHHHHGGGG----
T ss_pred CCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc-----------CCCEEEEECCHHHHHHHHHHHHhC----
Confidence 47999999999999999999999999999999998877654 467999999999999999998874
Q ss_pred CCce-EEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCCCHHHHHHHHHhCCCC
Q 013858 222 DSFK-TAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDK 300 (435)
Q Consensus 222 ~~~~-~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~ 300 (435)
++. +..+.|+.. ...+|+|+|++.+...+.. ...++++|||||||++.+.++.. ++..+ +.
T Consensus 157 -~~~~v~~~~g~~~---------~~~~Ivv~T~~~l~~~~~~---~~~~~~liIvDEaH~~~~~~~~~----~~~~~-~~ 218 (472)
T 2fwr_A 157 -GEEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESYVQ----IAQMS-IA 218 (472)
T ss_dssp -CGGGEEEBSSSCB---------CCCSEEEEEHHHHHHTHHH---HTTTCSEEEEETGGGTTSTTTHH----HHHTC-CC
T ss_pred -CCcceEEECCCcC---------CcCCEEEEEcHHHHHHHHH---hcCCCCEEEEECCcCCCChHHHH----HHHhc-CC
Confidence 466 777777653 2479999999999776542 12468999999999998877653 44444 45
Q ss_pred CeEEEEcccccHH-------------------HHHHHHHHcCCCeE--EEeCCCCC------------------------
Q 013858 301 HQTLLFSATMPVE-------------------IEALAQEYLTDPVQ--VKVGKVSS------------------------ 335 (435)
Q Consensus 301 ~q~i~~SATl~~~-------------------~~~~~~~~~~~~~~--i~~~~~~~------------------------ 335 (435)
.++++||||+... ...+...++..+.. +.+.....
T Consensus 219 ~~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 298 (472)
T 2fwr_A 219 PFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLR 298 (472)
T ss_dssp SEEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTT
T ss_pred CeEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 6799999999621 22221122221111 00000000
Q ss_pred CCCceEEEE---------------------EEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHH
Q 013858 336 PTANVIQIL---------------------EKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEAL 394 (435)
Q Consensus 336 ~~~~i~~~~---------------------~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L 394 (435)
....+.+.+ .......|...+.+.+.+ ..++++||||+++..++.+++.|
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~---------~~~~k~lvF~~~~~~~~~l~~~l 369 (472)
T 2fwr_A 299 RAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILER---------HRKDKIIIFTRHNELVYRISKVF 369 (472)
T ss_dssp CCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHH---------TSSSCBCCBCSCHHHHHHHHHHT
T ss_pred chhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHh---------CCCCcEEEEECCHHHHHHHHHHh
Confidence 000000000 001123344555555543 34567999999999999999988
Q ss_pred HhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 395 VAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 395 ~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
. +..+||++++.+|+++++.|++|+.+|||||+++
T Consensus 370 ~-----~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~ 404 (472)
T 2fwr_A 370 L-----IPAITHRTSREEREEILEGFRTGRFRAIVSSQVL 404 (472)
T ss_dssp T-----CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCC
T ss_pred C-----cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCch
Confidence 4 5679999999999999999999999999999886
No 61
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.96 E-value=3.6e-30 Score=262.06 Aligned_cols=231 Identities=22% Similarity=0.230 Sum_probs=168.0
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcCC
Q 013858 143 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 222 (435)
Q Consensus 143 ~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~~ 222 (435)
.++++|++.++.+..+++++++||||||||++|.+|++.. +.++||++|||+||.|+++.+.+..
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~-----------g~~vLVl~PTReLA~Qia~~l~~~~---- 281 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ-----------GYKVLVLNPSVAATLGFGAYMSKAH---- 281 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT-----------TCCEEEEESCHHHHHHHHHHHHHHH----
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC-----------CCeEEEEcchHHHHHHHHHHHHHHh----
Confidence 3455666666666688899999999999999988877652 4589999999999999998886654
Q ss_pred CceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCe
Q 013858 223 SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQ 302 (435)
Q Consensus 223 ~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q 302 (435)
+..+...+|+.. ...+++|+|+|||+|+ ....+.+.++++||||||| +++.+|...+..++..++...|
T Consensus 282 g~~vg~~vG~~~-------~~~~~~IlV~TPGrLl---~~~~l~l~~l~~lVlDEAH-~l~~~~~~~l~~Il~~l~~~~~ 350 (666)
T 3o8b_A 282 GIDPNIRTGVRT-------ITTGAPVTYSTYGKFL---ADGGCSGGAYDIIICDECH-STDSTTILGIGTVLDQAETAGA 350 (666)
T ss_dssp SCCCEEECSSCE-------ECCCCSEEEEEHHHHH---HTTSCCTTSCSEEEETTTT-CCSHHHHHHHHHHHHHTTTTTC
T ss_pred CCCeeEEECcEe-------ccCCCCEEEECcHHHH---hCCCcccCcccEEEEccch-hcCccHHHHHHHHHHhhhhcCC
Confidence 345666777753 4567899999999983 4556778899999999997 4566788888889988887666
Q ss_pred --EEEEcccccHHHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEE
Q 013858 303 --TLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVF 380 (435)
Q Consensus 303 --~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF 380 (435)
+++||||++..+. ...+....+.... ...+ ........ + . ...++++|||
T Consensus 351 ~llil~SAT~~~~i~------~~~p~i~~v~~~~--~~~i----~~~~~~~~-------l-------~--~~~~~~vLVF 402 (666)
T 3o8b_A 351 RLVVLATATPPGSVT------VPHPNIEEVALSN--TGEI----PFYGKAIP-------I-------E--AIRGGRHLIF 402 (666)
T ss_dssp SEEEEEESSCTTCCC------CCCTTEEEEECBS--CSSE----EETTEEEC-------G-------G--GSSSSEEEEE
T ss_pred ceEEEECCCCCcccc------cCCcceEEEeecc--cchh----HHHHhhhh-------h-------h--hccCCcEEEE
Confidence 7888999986321 1111111110000 0000 00000000 0 0 0345679999
Q ss_pred eCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 381 VERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 381 ~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
|+++++++.+++.|++.++.+..+||++++++ |++++.+||||||++
T Consensus 403 v~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVa 449 (666)
T 3o8b_A 403 CHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDAL 449 (666)
T ss_dssp CSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTH
T ss_pred eCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChH
Confidence 99999999999999999999999999999875 456777999999975
No 62
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.96 E-value=1.6e-30 Score=268.24 Aligned_cols=248 Identities=15% Similarity=0.220 Sum_probs=169.5
Q ss_pred HHHHCCCC-----CCcHHHH-----HHHHHHh------cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEE
Q 013858 135 DIEFHEYT-----RPTSIQA-----QAMPVAL------SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLAL 198 (435)
Q Consensus 135 ~l~~~~~~-----~p~~~Q~-----~~i~~~~------~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~l 198 (435)
.+..+||. .|+++|+ ++|+.++ .|++++++||||||||++|++|++..+... ++++|
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~-------~~~~l 274 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQK-------RLRTA 274 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHT-------TCCEE
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhC-------CCcEE
Confidence 34555666 8999999 9999888 899999999999999999999999886652 57899
Q ss_pred EEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecC
Q 013858 199 VLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEA 278 (435)
Q Consensus 199 il~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEa 278 (435)
|++||++||.|+++.++.+. +.. ..+.. . .....+.-+.+++.+.+.+.+.. ...+.++++||||||
T Consensus 275 ilaPTr~La~Q~~~~l~~~~-----i~~--~~~~l--~---~v~tp~~ll~~l~~~~l~~~l~~-~~~l~~l~lvViDEa 341 (673)
T 2wv9_A 275 VLAPTRVVAAEMAEALRGLP-----VRY--LTPAV--Q---REHSGNEIVDVMCHATLTHRLMS-PLRVPNYNLFVMDEA 341 (673)
T ss_dssp EEESSHHHHHHHHHHTTTSC-----CEE--CCC--------CCCCSCCCEEEEEHHHHHHHHHS-SSCCCCCSEEEEEST
T ss_pred EEccHHHHHHHHHHHHhcCC-----eee--ecccc--c---ccCCHHHHHHHHHhhhhHHHHhc-ccccccceEEEEeCC
Confidence 99999999999988876542 221 11100 0 00112234666777777777665 367899999999999
Q ss_pred CcccCCCCHHHHHHHHHhC-CCCCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHH
Q 013858 279 DRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLL 357 (435)
Q Consensus 279 h~~~~~~~~~~i~~i~~~~-~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~ 357 (435)
|++ +..+...+..+...+ ++..|+|+||||++..+..+... ..++. .......... ...++
T Consensus 342 H~~-~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~~--~~~i~--------------~v~~~~~~~~-~~~~l 403 (673)
T 2wv9_A 342 HFT-DPASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPDT--NSPVH--------------DVSSEIPDRA-WSSGF 403 (673)
T ss_dssp TCC-CHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCC--SSCEE--------------EEECCCCSSC-CSSCC
T ss_pred ccc-CccHHHHHHHHHHhccccCCcEEEEcCCCChhhhhhccc--CCceE--------------EEeeecCHHH-HHHHH
Confidence 987 222222333333333 36789999999998654322110 01111 1111111111 11111
Q ss_pred HHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 358 ALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 358 ~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
..+. ..++++||||+++++++.+++.|+..++.+..+||+ +|..+++.|++|+.+|||||+++
T Consensus 404 ~~l~----------~~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~ 466 (673)
T 2wv9_A 404 EWIT----------DYAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDIS 466 (673)
T ss_dssp HHHH----------SCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGG
T ss_pred HHHH----------hCCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchh
Confidence 2221 234579999999999999999999999999999994 89999999999999999999985
No 63
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.96 E-value=1.3e-28 Score=243.38 Aligned_cols=226 Identities=16% Similarity=0.176 Sum_probs=155.7
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHH
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIA 236 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~ 236 (435)
+|++++++||||||||++|++|++..+... +++++|++||++||.|+++.++ ++.+....|+...
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~-------g~~~lvl~Pt~~La~Q~~~~~~-------~~~v~~~~~~~~~- 65 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKK-------RLRTVILAPTRVVASEMYEALR-------GEPIRYMTPAVQS- 65 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHTT-------TSCEEEC-------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhC-------CCCEEEECcHHHHHHHHHHHhC-------CCeEEEEecCccc-
Confidence 478999999999999999999999766553 5789999999999999877654 3444444443211
Q ss_pred HHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCCCHHHHHHHHHh-CCCCCeEEEEcccccHHHH
Q 013858 237 EQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQN-LPDKHQTLLFSATMPVEIE 315 (435)
Q Consensus 237 ~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~~~~~i~~i~~~-~~~~~q~i~~SATl~~~~~ 315 (435)
....+.-+.++|.+.+.+.+.. ...+.++++|||||||++ +.++......+... .+++.|+|+||||+++.+.
T Consensus 66 ----~~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~ 139 (431)
T 2v6i_A 66 ----ERTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTTE 139 (431)
T ss_dssp -------CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCC
T ss_pred ----cCCCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchh
Confidence 1223457888999999887776 667899999999999986 33233333333333 2567899999999986432
Q ss_pred HHHHHHcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHH
Q 013858 316 ALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALV 395 (435)
Q Consensus 316 ~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~ 395 (435)
.+... ..++ .......+. .+...+...+. ..++++||||+++++++.+++.|+
T Consensus 140 ~~~~~--~~~i--------------~~~~~~~~~-~~~~~~~~~l~----------~~~~~~lVF~~~~~~~~~l~~~L~ 192 (431)
T 2v6i_A 140 AFPPS--NSPI--------------IDEETRIPD-KAWNSGYEWIT----------EFDGRTVWFVHSIKQGAEIGTCLQ 192 (431)
T ss_dssp SSCCC--SSCC--------------EEEECCCCS-SCCSSCCHHHH----------SCSSCEEEECSSHHHHHHHHHHHH
T ss_pred hhcCC--CCce--------------eeccccCCH-HHHHHHHHHHH----------cCCCCEEEEeCCHHHHHHHHHHHH
Confidence 11100 0111 111001111 11111222222 124579999999999999999999
Q ss_pred hCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 396 AEGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 396 ~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
..++.+..+||+ +|+++++.|++|+.+|||||+++
T Consensus 193 ~~~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~ 227 (431)
T 2v6i_A 193 KAGKKVLYLNRK----TFESEYPKCKSEKWDFVITTDIS 227 (431)
T ss_dssp HTTCCEEEESTT----THHHHTTHHHHSCCSEEEECGGG
T ss_pred HcCCeEEEeCCc----cHHHHHHhhcCCCCeEEEECchH
Confidence 999999999997 68889999999999999999975
No 64
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.96 E-value=3.8e-28 Score=250.35 Aligned_cols=272 Identities=19% Similarity=0.166 Sum_probs=160.1
Q ss_pred CCCcHHHHHHHHHHhc----C-CCEEEEccCCCchhHHhHHHHHHHHHhcC--CCCCCCCCeEEEEccChhhHHHHH-HH
Q 013858 142 TRPTSIQAQAMPVALS----G-RDLLGCAETGSGKTAAFTIPMIQHCVAQT--PVGRGDGPLALVLAPTRELAQQIE-KE 213 (435)
Q Consensus 142 ~~p~~~Q~~~i~~~~~----~-~~vii~~~TGsGKT~~~~~~~l~~~~~~~--~~~~~~~~~~lil~P~r~la~q~~-~~ 213 (435)
..|+++|.++++.++. + ++++++++||+|||+++ ++++..+.... ......++++||++|+++|+.|+. +.
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~-~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~ 255 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVA-FQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKT 255 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHH-HHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------C
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHH-HHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHH
Confidence 4799999999999875 4 56999999999999986 55555555432 011124688999999999999998 76
Q ss_pred HHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHc----CCCCCCCceEEEEecCCcccCCCCHHH
Q 013858 214 VKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQ----GNTSLSRVSFVILDEADRMLDMGFEPQ 289 (435)
Q Consensus 214 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~----~~~~l~~~~~iIiDEah~~~~~~~~~~ 289 (435)
++.++. ....+.++. ...+.+|+|+||++|...... ..+...++++|||||||++.+.+ ...
T Consensus 256 ~~~~~~-----~~~~~~~~~--------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~ 321 (590)
T 3h1t_A 256 FTPFGD-----ARHKIEGGK--------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSN 321 (590)
T ss_dssp CTTTCS-----SEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------
T ss_pred HHhcch-----hhhhhhccC--------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHH
Confidence 666542 233333322 345679999999999876542 23456789999999999986542 356
Q ss_pred HHHHHHhCCCCCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCC---CCCCCceEEEEE---------------------
Q 013858 290 IREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKV---SSPTANVIQILE--------------------- 345 (435)
Q Consensus 290 i~~i~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~i~~~~~--------------------- 345 (435)
+..++..++. .++|+||||+..........+++.++....-.. ............
T Consensus 322 ~~~il~~~~~-~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (590)
T 3h1t_A 322 WREILEYFEP-AFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGR 400 (590)
T ss_dssp CHHHHHHSTT-SEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC---------------
T ss_pred HHHHHHhCCc-ceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeecccccccccccccccc
Confidence 6777777764 578999999875443333444443322210000 000000000000
Q ss_pred -------EcC-------hhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCC--------cEEE
Q 013858 346 -------KVS-------ENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGL--------HAVA 403 (435)
Q Consensus 346 -------~~~-------~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~--------~v~~ 403 (435)
... ...+...+.+.+.+..... .+.+++||||+++.+|+.+++.|++.+. .+..
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~----~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~ 476 (590)
T 3h1t_A 401 EIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRT----DRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVAR 476 (590)
T ss_dssp --------CCSHHHHHHHHHTHHHHHHHHHHHHHHH----CTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEE
T ss_pred ccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhc----CCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEE
Confidence 000 0122333444444333322 4557899999999999999999987643 2788
Q ss_pred ecCCCCHHHHHHHHHHHHcCCCc---EEEEcCCC
Q 013858 404 LHGGRNQSDRESALRDFRNGSTN---ILVFSYKL 434 (435)
Q Consensus 404 lh~~~~~~~R~~~~~~f~~g~~~---VLVaT~~L 434 (435)
+||.+++ +|+.+++.|++|+.+ |||||+++
T Consensus 477 i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l 509 (590)
T 3h1t_A 477 VTSEEGK-IGKGHLSRFQELETSTPVILTTSQLL 509 (590)
T ss_dssp CSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTT
T ss_pred EeCCChH-HHHHHHHHHhCCCCCCCEEEEECChh
Confidence 9999864 799999999998876 88999886
No 65
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.95 E-value=2.7e-29 Score=250.28 Aligned_cols=228 Identities=16% Similarity=0.207 Sum_probs=156.5
Q ss_pred HHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcCCCceEEEEE
Q 013858 151 AMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVV 230 (435)
Q Consensus 151 ~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~ 230 (435)
....+..++++++++|||||||++|++|++..+... ++++||++|||+||.|+++.++. +.+....
T Consensus 14 ~~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~-------~~~~lvl~Ptr~La~Q~~~~l~g-------~~v~~~~ 79 (459)
T 2z83_A 14 SPNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQ-------RLRTAVLAPTRVVAAEMAEALRG-------LPVRYQT 79 (459)
T ss_dssp -CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHT-------TCCEEEEECSHHHHHHHHHHTTT-------SCEEECC
T ss_pred HHHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhC-------CCcEEEECchHHHHHHHHHHhcC-------ceEeEEe
Confidence 334456788999999999999999999999887652 57899999999999999887762 2222211
Q ss_pred CCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcc-----cCCCCHHHHHHHHHhCCCCCeEEE
Q 013858 231 GGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRM-----LDMGFEPQIREVMQNLPDKHQTLL 305 (435)
Q Consensus 231 g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~-----~~~~~~~~i~~i~~~~~~~~q~i~ 305 (435)
+.... ....+..+.++|.+.+.+.+.. ...+.++++|||||||+. +..++... +. .+++.|+|+
T Consensus 80 ~~~~~-----~~t~~~~i~~~~~~~l~~~l~~-~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~----~~-~~~~~~~il 148 (459)
T 2z83_A 80 SAVQR-----EHQGNEIVDVMCHATLTHRLMS-PNRVPNYNLFVMDEAHFTDPASIAARGYIAT----KV-ELGEAAAIF 148 (459)
T ss_dssp -------------CCCSEEEEEHHHHHHHHHS-CC-CCCCSEEEESSTTCCSHHHHHHHHHHHH----HH-HTTSCEEEE
T ss_pred ccccc-----CCCCCcEEEEEchHHHHHHhhc-cccccCCcEEEEECCccCCchhhHHHHHHHH----Hh-ccCCccEEE
Confidence 11100 1134456889999999887766 456889999999999973 22222211 11 136789999
Q ss_pred EcccccHHHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchH
Q 013858 306 FSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKT 385 (435)
Q Consensus 306 ~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~ 385 (435)
||||++..+..+... ..|+...... ++. .+...+...+.+ .++++||||++++
T Consensus 149 ~SAT~~~~~~~~~~~--~~pi~~~~~~--------------~~~-~~~~~~~~~l~~----------~~~~~LVF~~s~~ 201 (459)
T 2z83_A 149 MTATPPGTTDPFPDS--NAPIHDLQDE--------------IPD-RAWSSGYEWITE----------YAGKTVWFVASVK 201 (459)
T ss_dssp ECSSCTTCCCSSCCC--SSCEEEEECC--------------CCS-SCCSSCCHHHHH----------CCSCEEEECSCHH
T ss_pred EEcCCCcchhhhccC--CCCeEEeccc--------------CCc-chhHHHHHHHHh----------cCCCEEEEeCChH
Confidence 999998654322111 2233221111 000 000111122221 1357999999999
Q ss_pred HHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 386 RCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 386 ~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
+|+.+++.|+..++.+..+||+ +|..+++.|++|+.+|||||+++
T Consensus 202 ~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~ 246 (459)
T 2z83_A 202 MGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDIS 246 (459)
T ss_dssp HHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC
T ss_pred HHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChH
Confidence 9999999999999999999995 78889999999999999999986
No 66
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.95 E-value=2.2e-28 Score=242.29 Aligned_cols=229 Identities=15% Similarity=0.188 Sum_probs=143.4
Q ss_pred HHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCC
Q 013858 154 VALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGT 233 (435)
Q Consensus 154 ~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~ 233 (435)
++++|++++++||||||||++|++|++..+... +++++|++||++||.|+++.++.+ .+....+..
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~-------~~~~lil~Ptr~La~Q~~~~l~~~-------~v~~~~~~~ 69 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR-------RLRTLVLAPTRVVLSEMKEAFHGL-------DVKFHTQAF 69 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHTTTS-------CEEEESSCC
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc-------CCeEEEEcchHHHHHHHHHHHhcC-------CeEEecccc
Confidence 456899999999999999999999999877653 578999999999999998877643 222211111
Q ss_pred CHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCCCHHHHHHHHHhC-CCCCeEEEEcccccH
Q 013858 234 NIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL-PDKHQTLLFSATMPV 312 (435)
Q Consensus 234 ~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~-~~~~q~i~~SATl~~ 312 (435)
.. ....+.-+-+++.+.+...+.. ...+.++++|||||||++ +.++...+..+...+ +.+.|+++||||+++
T Consensus 70 ~~-----v~Tp~~l~~~l~~~~l~~~~~~-~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~ 142 (440)
T 1yks_A 70 SA-----HGSGREVIDAMCHATLTYRMLE-PTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATILMTATPPG 142 (440)
T ss_dssp CC-----CCCSSCCEEEEEHHHHHHHHTS-SSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSCTT
T ss_pred ee-----ccCCccceeeecccchhHhhhC-cccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEEEeCCCCc
Confidence 00 0001112233344444444433 456889999999999987 333333222222222 357899999999976
Q ss_pred HHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHH
Q 013858 313 EIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSE 392 (435)
Q Consensus 313 ~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~ 392 (435)
.+..+... ..++. .....++...+ ..++..+.+ .++++||||++++.++.+++
T Consensus 143 ~~~~~~~~--~~~~~--------------~~~~~~~~~~~-~~~~~~l~~----------~~~~~lVF~~s~~~a~~l~~ 195 (440)
T 1yks_A 143 TSDEFPHS--NGEIE--------------DVQTDIPSEPW-NTGHDWILA----------DKRPTAWFLPSIRAANVMAA 195 (440)
T ss_dssp CCCSSCCC--SSCEE--------------EEECCCCSSCC-SSSCHHHHH----------CCSCEEEECSCHHHHHHHHH
T ss_pred hhhhhhhc--CCCee--------------EeeeccChHHH-HHHHHHHHh----------cCCCEEEEeCCHHHHHHHHH
Confidence 54322211 01111 11111111111 111222221 13579999999999999999
Q ss_pred HHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 393 ALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 393 ~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
.|+..++.+..+|| ++|..+++.|++|+.+|||||+++
T Consensus 196 ~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~ 233 (440)
T 1yks_A 196 SLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIA 233 (440)
T ss_dssp HHHHTTCCEEECCS----SSCC--------CCCSEEEESSST
T ss_pred HHHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChh
Confidence 99999999999999 468899999999999999999986
No 67
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.94 E-value=9.1e-27 Score=239.71 Aligned_cols=230 Identities=17% Similarity=0.150 Sum_probs=166.0
Q ss_pred HHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECC
Q 013858 153 PVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGG 232 (435)
Q Consensus 153 ~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~ 232 (435)
...+.|++++++||||||||+ +++..+.. .+..+|++|||+||.|++++++++ ++.+..++|+
T Consensus 150 ar~l~rk~vlv~apTGSGKT~----~al~~l~~--------~~~gl~l~PtR~LA~Qi~~~l~~~-----g~~v~lltG~ 212 (677)
T 3rc3_A 150 ARAMQRKIIFHSGPTNSGKTY----HAIQKYFS--------AKSGVYCGPLKLLAHEIFEKSNAA-----GVPCDLVTGE 212 (677)
T ss_dssp HHTSCCEEEEEECCTTSSHHH----HHHHHHHH--------SSSEEEEESSHHHHHHHHHHHHHT-----TCCEEEECSS
T ss_pred HHhcCCCEEEEEcCCCCCHHH----HHHHHHHh--------cCCeEEEeCHHHHHHHHHHHHHhc-----CCcEEEEECC
Confidence 345688999999999999997 33444443 234599999999999999998875 4678888888
Q ss_pred CCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCCCHHHHHHHHHhCC-CCCeEEEEccccc
Q 013858 233 TNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLP-DKHQTLLFSATMP 311 (435)
Q Consensus 233 ~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~-~~~q~i~~SATl~ 311 (435)
..... .......+++++|++.+. ....+++|||||||++.+.+++..+..++..++ ...+++++|||.+
T Consensus 213 ~~~iv--~TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~~ 282 (677)
T 3rc3_A 213 ERVTV--QPNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAID 282 (677)
T ss_dssp CEECC--STTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGHH
T ss_pred eeEEe--cCCCcccceeEecHhHhh--------hcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchHH
Confidence 64310 000112578888875441 346789999999999999999999999999888 6889999999963
Q ss_pred HHHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHH
Q 013858 312 VEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVS 391 (435)
Q Consensus 312 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~ 391 (435)
.+..+.... ...+.+....... .... ... . +..+. ....+.+|||+++++++.++
T Consensus 283 -~i~~l~~~~-~~~~~v~~~~r~~---~l~~----~~~--~----l~~l~----------~~~~g~iIf~~s~~~ie~la 337 (677)
T 3rc3_A 283 -LVMELMYTT-GEEVEVRDYKRLT---PISV----LDH--A----LESLD----------NLRPGDCIVCFSKNDIYSVS 337 (677)
T ss_dssp -HHHHHHHHH-TCCEEEEECCCSS---CEEE----CSS--C----CCSGG----------GCCTTEEEECSSHHHHHHHH
T ss_pred -HHHHHHHhc-CCceEEEEeeecc---hHHH----HHH--H----HHHHH----------hcCCCCEEEEcCHHHHHHHH
Confidence 344444433 3344443221111 0000 000 0 00000 01123689999999999999
Q ss_pred HHHHhCCCcEEEecCCCCHHHHHHHHHHHHc--CCCcEEEEcCCC
Q 013858 392 EALVAEGLHAVALHGGRNQSDRESALRDFRN--GSTNILVFSYKL 434 (435)
Q Consensus 392 ~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~--g~~~VLVaT~~L 434 (435)
+.|++.++.+..+||+|++++|..+++.|++ |+.+|||||+++
T Consensus 338 ~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~ 382 (677)
T 3rc3_A 338 RQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAI 382 (677)
T ss_dssp HHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGG
T ss_pred HHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHH
Confidence 9999999999999999999999999999999 899999999975
No 68
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.93 E-value=9.2e-25 Score=220.73 Aligned_cols=264 Identities=14% Similarity=0.190 Sum_probs=177.7
Q ss_pred CCCcHHHHHHHHHHh----cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHH
Q 013858 142 TRPTSIQAQAMPVAL----SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (435)
Q Consensus 142 ~~p~~~Q~~~i~~~~----~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~ 217 (435)
..|+|+|.+++.++. .++++|++++||+|||+++ +.++..+.... ...++||++|+ .|+.||.++++++
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~a-i~~i~~~~~~~-----~~~~~LIv~P~-~l~~qw~~e~~~~ 108 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQT-IAVFSDAKKEN-----ELTPSLVICPL-SVLKNWEEELSKF 108 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHH-HHHHHHHHHTT-----CCSSEEEEECS-TTHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHH-HHHHHHHHhcC-----CCCCEEEEccH-HHHHHHHHHHHHH
Confidence 468999999998874 5788999999999999986 55555554421 24579999995 6889999999988
Q ss_pred hhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCCCHHHHHHHHHhC
Q 013858 218 SRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNL 297 (435)
Q Consensus 218 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~ 297 (435)
+. .+++..+.|+... ......+|+|+|++.+.+... +...++++||+||||++.+.+ ....+.+..+
T Consensus 109 ~~---~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~--~~~~~~l~~l 175 (500)
T 1z63_A 109 AP---HLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQ--TKIFKAVKEL 175 (500)
T ss_dssp CT---TSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTT--SHHHHHHHTS
T ss_pred CC---CceEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHh--HHHHHHHHhh
Confidence 63 4666666665421 122347899999999965432 234578999999999987764 2344555555
Q ss_pred CCCCeEEEEcccccHH-HHHH------------------------------------HHHHcCCCeEEEeCCCC----CC
Q 013858 298 PDKHQTLLFSATMPVE-IEAL------------------------------------AQEYLTDPVQVKVGKVS----SP 336 (435)
Q Consensus 298 ~~~~q~i~~SATl~~~-~~~~------------------------------------~~~~~~~~~~i~~~~~~----~~ 336 (435)
+. .+.+++|||+... ..++ .+.++ .+..+...... ..
T Consensus 176 ~~-~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l-~~~~lrr~k~~~~~~~~ 253 (500)
T 1z63_A 176 KS-KYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAII-SPFILRRTKYDKAIIND 253 (500)
T ss_dssp CE-EEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHH-TTTEECCCTTCHHHHTT
T ss_pred cc-CcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHH-hhHeeeecccccchhhc
Confidence 43 4679999998321 1111 11122 23332221111 11
Q ss_pred CCceEEEEEEcC--h-------------------------------------------------------hhHHHHHHHH
Q 013858 337 TANVIQILEKVS--E-------------------------------------------------------NEKVDRLLAL 359 (435)
Q Consensus 337 ~~~i~~~~~~~~--~-------------------------------------------------------~~k~~~l~~~ 359 (435)
.+........+. . ..|...+.+.
T Consensus 254 lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~ 333 (500)
T 1z63_A 254 LPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEI 333 (500)
T ss_dssp SCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHH
Confidence 122222222221 1 1222333333
Q ss_pred HHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhC-CCcEEEecCCCCHHHHHHHHHHHHcC-CCc-EEEEcCCC
Q 013858 360 LVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE-GLHAVALHGGRNQSDRESALRDFRNG-STN-ILVFSYKL 434 (435)
Q Consensus 360 l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~-~~~v~~lh~~~~~~~R~~~~~~f~~g-~~~-VLVaT~~L 434 (435)
+.+.. ..+.++||||++...++.+++.|+.. |+.+..+||++++.+|.++++.|++| ..+ +||||+++
T Consensus 334 l~~~~-------~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~ 404 (500)
T 1z63_A 334 IEEAL-------DEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAG 404 (500)
T ss_dssp HHHHH-------TTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC
T ss_pred HHHHH-------ccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccc
Confidence 33322 34567999999999999999999885 99999999999999999999999998 565 78899864
No 69
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.93 E-value=1.2e-24 Score=233.02 Aligned_cols=276 Identities=13% Similarity=0.073 Sum_probs=178.3
Q ss_pred CCCcHHHHHHHHHHhc--------------CCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhH
Q 013858 142 TRPTSIQAQAMPVALS--------------GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELA 207 (435)
Q Consensus 142 ~~p~~~Q~~~i~~~~~--------------~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la 207 (435)
..|+++|..|++.++. +++++++++||||||+++ ++++..+.. .+..+++|||+||++|+
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~-----~~~~~rvLvlvpr~eL~ 343 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATE-----LDFIDKVFFVVDRKDLD 343 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTT-----CTTCCEEEEEECGGGCC
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHh-----cCCCceEEEEeCcHHHH
Confidence 4599999999999875 368999999999999987 666644332 12246899999999999
Q ss_pred HHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHh-CCCcEEEECcHHHHHHHHcCC--CCCCCceEEEEecCCcccCC
Q 013858 208 QQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELR-GGVSIVVATPGRFLDHLQQGN--TSLSRVSFVILDEADRMLDM 284 (435)
Q Consensus 208 ~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~I~v~T~~~l~~~l~~~~--~~l~~~~~iIiDEah~~~~~ 284 (435)
.|+.+.++.++.. .+.++.+.......+. .+.+|+|+|+++|...+.... ..+.++.+||+|||||+..
T Consensus 344 ~Q~~~~f~~f~~~-------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~- 415 (1038)
T 2w00_A 344 YQTMKEYQRFSPD-------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF- 415 (1038)
T ss_dssp HHHHHHHHTTSTT-------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH-
T ss_pred HHHHHHHHHhccc-------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc-
Confidence 9999999887642 1234445555555553 568999999999998776432 2356789999999999753
Q ss_pred CCHHHHHHHHHhCCCCCeEEEEcccccHHHH----HHHHHHcCC-----------------CeEEEeCCCCCCCC-----
Q 013858 285 GFEPQIREVMQNLPDKHQTLLFSATMPVEIE----ALAQEYLTD-----------------PVQVKVGKVSSPTA----- 338 (435)
Q Consensus 285 ~~~~~i~~i~~~~~~~~q~i~~SATl~~~~~----~~~~~~~~~-----------------~~~i~~~~~~~~~~----- 338 (435)
...+..++..+++ .++++||||+..... .....+++. |+.+..........
T Consensus 416 --~~~~~~I~~~~p~-a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e 492 (1038)
T 2w00_A 416 --GEAQKNLKKKFKR-YYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETE 492 (1038)
T ss_dssp --HHHHHHHHHHCSS-EEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTC
T ss_pred --hHHHHHHHHhCCc-ccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhhcccc
Confidence 3345667777764 689999999964321 112223332 22221111000000
Q ss_pred -c------eEEEEEEcChhhHHHHHHHHHHHHHHhhhc---cCCCCCcEEEEeCchHHHHHHHHHHHhCC----------
Q 013858 339 -N------VIQILEKVSENEKVDRLLALLVEEAFLAEK---SCHPFPLTIVFVERKTRCDEVSEALVAEG---------- 398 (435)
Q Consensus 339 -~------i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~---~~~~~~~~lVF~~~~~~~~~l~~~L~~~~---------- 398 (435)
. +.+ ........+...+.+.+.++...... ....+.++||||+++..|..+++.|++.+
T Consensus 493 ~d~~~~~~i~~-~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~ 571 (1038)
T 2w00_A 493 TDEKKLSAAEN-QQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATY 571 (1038)
T ss_dssp CCHHHHHHTCS-TTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSC
T ss_pred ccHHHHHHHHH-HHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhccccccc
Confidence 0 000 00001223334444444333221110 00134579999999999999999997754
Q ss_pred --CcE-EEecCC----------C----------CH-----------------------------HHHHHHHHHHHcCCCc
Q 013858 399 --LHA-VALHGG----------R----------NQ-----------------------------SDRESALRDFRNGSTN 426 (435)
Q Consensus 399 --~~v-~~lh~~----------~----------~~-----------------------------~~R~~~~~~f~~g~~~ 426 (435)
+.+ .++||+ + ++ .+|..++++|++|+.+
T Consensus 572 ~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ 651 (1038)
T 2w00_A 572 KPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDID 651 (1038)
T ss_dssp CCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSS
T ss_pred ccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCe
Confidence 455 455542 2 22 2488899999999999
Q ss_pred EEEEcCCCC
Q 013858 427 ILVFSYKLL 435 (435)
Q Consensus 427 VLVaT~~L~ 435 (435)
|||+||+|+
T Consensus 652 ILIvvd~ll 660 (1038)
T 2w00_A 652 LLIVVGMFL 660 (1038)
T ss_dssp EEEESSTTS
T ss_pred EEEEcchHH
Confidence 999999985
No 70
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.93 E-value=2.2e-25 Score=240.09 Aligned_cols=272 Identities=18% Similarity=0.144 Sum_probs=172.9
Q ss_pred CCCcHHHHHHHHHHhcC--CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhh
Q 013858 142 TRPTSIQAQAMPVALSG--RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSR 219 (435)
Q Consensus 142 ~~p~~~Q~~~i~~~~~~--~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~ 219 (435)
..|+|+|.+++.+++.. .++|++++||+|||.+++..+...+.. + ...++||++|+ .|+.||.+++.+..
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~-g-----~~~rvLIVvP~-sLl~Qw~~E~~~~f- 223 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLS-G-----AAERVLIIVPE-TLQHQWLVEMLRRF- 223 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHT-S-----SCCCEEEECCT-TTHHHHHHHHHHHS-
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHh-C-----CCCeEEEEeCH-HHHHHHHHHHHHHh-
Confidence 57899999999998864 479999999999999885555444332 1 23479999999 99999999996654
Q ss_pred cCCCceEEEEECCCCHHHHHH---HHhCCCcEEEECcHHHHHHHHc-CCCCCCCceEEEEecCCcccCCCCH--HHHHHH
Q 013858 220 SLDSFKTAIVVGGTNIAEQRS---ELRGGVSIVVATPGRFLDHLQQ-GNTSLSRVSFVILDEADRMLDMGFE--PQIREV 293 (435)
Q Consensus 220 ~~~~~~~~~~~g~~~~~~~~~---~~~~~~~I~v~T~~~l~~~l~~-~~~~l~~~~~iIiDEah~~~~~~~~--~~i~~i 293 (435)
++.+..+.|+. ...... ......+|+|+|++.+.+.... ..+...++++|||||||++.+.+.. ..+..+
T Consensus 224 ---~l~v~v~~~~~-~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l 299 (968)
T 3dmq_A 224 ---NLRFALFDDER-YAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAI 299 (968)
T ss_dssp ---CCCCEECCHHH-HHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHH
T ss_pred ---CCCEEEEccch-hhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHH
Confidence 34555444332 111111 1123468999999988532111 0123457899999999998765422 112222
Q ss_pred HHhCCCCCeEEEEcccccH----HHHHHH----------------------------HHHcC------------------
Q 013858 294 MQNLPDKHQTLLFSATMPV----EIEALA----------------------------QEYLT------------------ 323 (435)
Q Consensus 294 ~~~~~~~~q~i~~SATl~~----~~~~~~----------------------------~~~~~------------------ 323 (435)
........+++++|||+.. ++..+. ..+..
T Consensus 300 ~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~ 379 (968)
T 3dmq_A 300 EQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGE 379 (968)
T ss_dssp HHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCT
T ss_pred HHHhhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcc
Confidence 2222233458999999832 000000 00000
Q ss_pred ----------------------------------CCeEEEeCCCC---CCCCceEEEEE---------------------
Q 013858 324 ----------------------------------DPVQVKVGKVS---SPTANVIQILE--------------------- 345 (435)
Q Consensus 324 ----------------------------------~~~~i~~~~~~---~~~~~i~~~~~--------------------- 345 (435)
..+.+...... .+.........
T Consensus 380 ~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 459 (968)
T 3dmq_A 380 QDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKS 459 (968)
T ss_dssp TCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSS
T ss_pred hhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhh
Confidence 00000000000 00000111111
Q ss_pred ------------------------EcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHh-CCCc
Q 013858 346 ------------------------KVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVA-EGLH 400 (435)
Q Consensus 346 ------------------------~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~-~~~~ 400 (435)
.+....|...+.+.+.. .+++++||||+++..++.+++.|+. .|+.
T Consensus 460 ~~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~---------~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~ 530 (968)
T 3dmq_A 460 AEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS---------HRSQKVLVICAKAATALQLEQVLREREGIR 530 (968)
T ss_dssp GGGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH---------TSSSCCCEECSSTHHHHHHHHHHHTTTCCC
T ss_pred hHHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHh---------CCCCCEEEEeCcHHHHHHHHHHHHHHcCCc
Confidence 11223456666665544 3556799999999999999999995 5999
Q ss_pred EEEecCCCCHHHHHHHHHHHHcCC--CcEEEEcCCC
Q 013858 401 AVALHGGRNQSDRESALRDFRNGS--TNILVFSYKL 434 (435)
Q Consensus 401 v~~lh~~~~~~~R~~~~~~f~~g~--~~VLVaT~~L 434 (435)
+..+||++++.+|..+++.|++|+ .+|||||+++
T Consensus 531 ~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~ 566 (968)
T 3dmq_A 531 AAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIG 566 (968)
T ss_dssp EEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCT
T ss_pred EEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchh
Confidence 999999999999999999999998 9999999875
No 71
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.92 E-value=2.4e-25 Score=199.41 Aligned_cols=167 Identities=20% Similarity=0.231 Sum_probs=119.9
Q ss_pred CCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHH-HHHHHHHH
Q 013858 139 HEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQ-IEKEVKAL 217 (435)
Q Consensus 139 ~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q-~~~~~~~~ 217 (435)
.....|+++|.++++.++.++++++++|||+|||++|+++++..+..... ...++++||++|+++|+.| +.+.++.+
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~--~~~~~~~lil~p~~~L~~q~~~~~~~~~ 106 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKK--ASEPGKVIVLVNKVLLVEQLFRKEFQPF 106 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHH--TTCCCCEEEEESSHHHHHHHHHHTHHHH
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhccc--ccCCCcEEEEECHHHHHHHHHHHHHHHH
Confidence 34568999999999999999999999999999999999988876544211 1125789999999999999 88888888
Q ss_pred hhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCC------CCCCCceEEEEecCCcccCCCCHHHHH
Q 013858 218 SRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGN------TSLSRVSFVILDEADRMLDMGFEPQIR 291 (435)
Q Consensus 218 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~------~~l~~~~~iIiDEah~~~~~~~~~~i~ 291 (435)
... ++.+..+.|+............+++|+|+||+.|.+.+.... ..+.++++|||||||++.+.++...+.
T Consensus 107 ~~~--~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~ 184 (216)
T 3b6e_A 107 LKK--WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIM 184 (216)
T ss_dssp HTT--TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHH
T ss_pred hcc--CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHH
Confidence 764 578888887765433333333458999999999998887643 557889999999999988766555543
Q ss_pred H-HHHhC-------------CCCCeEEEEccc
Q 013858 292 E-VMQNL-------------PDKHQTLLFSAT 309 (435)
Q Consensus 292 ~-i~~~~-------------~~~~q~i~~SAT 309 (435)
. ++... .+..++|+||||
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 185 RHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 2 22111 156899999998
No 72
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.92 E-value=1.5e-24 Score=196.94 Aligned_cols=184 Identities=18% Similarity=0.231 Sum_probs=133.4
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHH
Q 013858 129 HPSIMKDIEFHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQ 208 (435)
Q Consensus 129 ~~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~ 208 (435)
++.+.+.+.......++++|.++++.+..|++++++|+||||||+++.++++......+. ..+.++++++|+++++.
T Consensus 47 ~~~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~---~~~~~~l~~~p~~~la~ 123 (235)
T 3llm_A 47 DHDLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR---AAECNIVVTQPRRISAV 123 (235)
T ss_dssp CHHHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC---GGGCEEEEEESSHHHHH
T ss_pred CHHHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC---CCceEEEEeccchHHHH
Confidence 344444455555566799999999999999999999999999999888888877665321 22458999999999999
Q ss_pred HHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcc-cCCCCH
Q 013858 209 QIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRM-LDMGFE 287 (435)
Q Consensus 209 q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~-~~~~~~ 287 (435)
|+.+.+.......-+..++........ ....+++|+|+|||+|++.+.. .+.++++|||||||++ ++.+|.
T Consensus 124 q~~~~~~~~~~~~~~~~~g~~~~~~~~-----~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~~ 195 (235)
T 3llm_A 124 SVAERVAFERGEEPGKSCGYSVRFESI-----LPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTDFL 195 (235)
T ss_dssp HHHHHHHHTTTCCTTSSEEEEETTEEE-----CCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHHH
T ss_pred HHHHHHHHHhccccCceEEEeechhhc-----cCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchHHH
Confidence 998888665433223333332221100 0124578999999999999876 4889999999999964 676666
Q ss_pred -HHHHHHHHhCCCCCeEEEEcccccHHHHHHHHHHcCCCe
Q 013858 288 -PQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYLTDPV 326 (435)
Q Consensus 288 -~~i~~i~~~~~~~~q~i~~SATl~~~~~~~~~~~~~~~~ 326 (435)
..+..++... +++|+++||||++... +.+.|...|+
T Consensus 196 ~~~l~~i~~~~-~~~~~il~SAT~~~~~--~~~~~~~~pv 232 (235)
T 3llm_A 196 LVVLRDVVQAY-PEVRIVLMSATIDTSM--FCEYFFNCPI 232 (235)
T ss_dssp HHHHHHHHHHC-TTSEEEEEECSSCCHH--HHHHTTSCCC
T ss_pred HHHHHHHHhhC-CCCeEEEEecCCCHHH--HHHHcCCCCE
Confidence 3555555554 5789999999998776 5555555544
No 73
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.91 E-value=2e-23 Score=221.46 Aligned_cols=325 Identities=15% Similarity=0.227 Sum_probs=201.8
Q ss_pred CCCCCCcccCCCHHHHHHHHHHcCceEEecCCCCCCCCCCCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHh----
Q 013858 81 NWKPSDRVLRFNPEQIEEVRLRLNVDVTVASGSVPAPAPIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVAL---- 156 (435)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~---- 156 (435)
.|.....+....++.+..+..+.+......... ..+.....|..+...+... .-..++|||.+++.+++
T Consensus 181 tWe~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~------~~~~Lr~yQ~egv~~l~~~~~ 253 (800)
T 3mwy_W 181 TWENATDIVKLAPEQVKHFQNRENSKILPQYSS-NYTSQRPRFEKLSVQPPFI------KGGELRDFQLTGINWMAFLWS 253 (800)
T ss_dssp BCCBHHHHTTTCHHHHHHHHHTTTCTTCSTTCC-CCCSCCCCCCCCSSCCTTC------CSSCCCTHHHHHHHHHHHHHT
T ss_pred cccchhhhhhhhHHHHHHHHHhhhcccCCcchh-cccccCCcccccccCCCcc------CCCCcCHHHHHHHHHHHHHhh
Confidence 455544555566777888877655432221111 1112222344443222211 12468999999999876
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHH
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIA 236 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~ 236 (435)
.++++|++.+||+|||+++ +.++..+.... .....+||||| ..++.||.+++.+++ +++++.++.|+....
T Consensus 254 ~~~~~ILademGlGKT~~a-i~~i~~l~~~~----~~~~~~LIV~P-~sll~qW~~E~~~~~---p~~~v~~~~g~~~~r 324 (800)
T 3mwy_W 254 KGDNGILADEMGLGKTVQT-VAFISWLIFAR----RQNGPHIIVVP-LSTMPAWLDTFEKWA---PDLNCICYMGNQKSR 324 (800)
T ss_dssp TTCCEEECCCTTSSTTHHH-HHHHHHHHHHH----SCCSCEEEECC-TTTHHHHHHHHHHHS---TTCCEEECCCSSHHH
T ss_pred cCCCEEEEeCCCcchHHHH-HHHHHHHHHhc----CCCCCEEEEEC-chHHHHHHHHHHHHC---CCceEEEEeCCHHHH
Confidence 7889999999999999876 44444433221 12345899999 578899999999886 467777777766544
Q ss_pred HHHHHH------------hCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEE
Q 013858 237 EQRSEL------------RGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTL 304 (435)
Q Consensus 237 ~~~~~~------------~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i 304 (435)
...... ....+|+|+|++.+.+.... +...++++|||||||++.+.. ......+..+... ..+
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~lkn~~--s~~~~~l~~l~~~-~rl 399 (800)
T 3mwy_W 325 DTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRLKNAE--SSLYESLNSFKVA-NRM 399 (800)
T ss_dssp HHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGGCCSS--SHHHHHHTTSEEE-EEE
T ss_pred HHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhhcCch--hHHHHHHHHhhhc-cEE
Confidence 433322 23568999999999765432 223468999999999987643 3455555555443 468
Q ss_pred EEcccc----cHHHHHHHHHHcC-----------------------------CCeEEEeCCCC--CCCCceEEEEEEcC-
Q 013858 305 LFSATM----PVEIEALAQEYLT-----------------------------DPVQVKVGKVS--SPTANVIQILEKVS- 348 (435)
Q Consensus 305 ~~SATl----~~~~~~~~~~~~~-----------------------------~~~~i~~~~~~--~~~~~i~~~~~~~~- 348 (435)
++|||+ ..++..++..... .|..+...... ...+........+.
T Consensus 400 ~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~LP~k~~~~v~v~l 479 (800)
T 3mwy_W 400 LITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKSLPSKTERILRVEL 479 (800)
T ss_dssp EECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTTSCCEEEEEEEECC
T ss_pred EeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhhhccCCcEEEEEEeCC
Confidence 999998 2222222221110 12222111100 00122222222221
Q ss_pred -h-------------------------------------------------------------------------hhHHH
Q 013858 349 -E-------------------------------------------------------------------------NEKVD 354 (435)
Q Consensus 349 -~-------------------------------------------------------------------------~~k~~ 354 (435)
. ..|..
T Consensus 480 s~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~ 559 (800)
T 3mwy_W 480 SDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMV 559 (800)
T ss_dssp CHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHHHHHHHHTCHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccHHHHHHHhhhcChHHH
Confidence 1 12233
Q ss_pred HHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCc---EEEEc
Q 013858 355 RLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTN---ILVFS 431 (435)
Q Consensus 355 ~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~---VLVaT 431 (435)
.+.+++.+.. ..+.++||||.....++.|...|...|+.+..+||+++..+|..+++.|++|... +|++|
T Consensus 560 ~L~~lL~~~~-------~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt 632 (800)
T 3mwy_W 560 LLDQLLTRLK-------KDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLST 632 (800)
T ss_dssp HHHHHHHHHT-------TTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEH
T ss_pred HHHHHHHHHh-------hCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEec
Confidence 3333333322 3456899999999999999999999999999999999999999999999986554 88888
Q ss_pred CC
Q 013858 432 YK 433 (435)
Q Consensus 432 ~~ 433 (435)
.+
T Consensus 633 ~a 634 (800)
T 3mwy_W 633 RA 634 (800)
T ss_dssp HH
T ss_pred cc
Confidence 54
No 74
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.91 E-value=2.9e-22 Score=205.03 Aligned_cols=131 Identities=21% Similarity=0.301 Sum_probs=112.8
Q ss_pred HCCCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHH
Q 013858 138 FHEYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (435)
Q Consensus 138 ~~~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~ 217 (435)
.+|+ +|+++|..+++.++.|+ |..+.||+|||++|.+|++...+. |.+++|++||++||.|.++.+..+
T Consensus 75 ~lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~--------G~qv~VvTPTreLA~Qdae~m~~l 143 (997)
T 2ipc_A 75 YLGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT--------GKGVHVVTVNDYLARRDAEWMGPV 143 (997)
T ss_dssp HTCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT--------CSCCEEEESSHHHHHHHHHHHHHH
T ss_pred HhCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh--------CCCEEEEeCCHHHHHHHHHHHHHH
Confidence 3788 99999999999999999 999999999999999999765443 567999999999999999999999
Q ss_pred hhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHH-HHHHHcC------CCCCC---CceEEEEecCCccc
Q 013858 218 SRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRF-LDHLQQG------NTSLS---RVSFVILDEADRML 282 (435)
Q Consensus 218 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l-~~~l~~~------~~~l~---~~~~iIiDEah~~~ 282 (435)
+..+ ++++.+++||........ ..+++|+|+||+.| .+++..+ .+.++ .+.++||||||+++
T Consensus 144 ~~~l-GLsv~~i~Gg~~~~~r~~--ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 144 YRGL-GLSVGVIQHASTPAERRK--AYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp HHTT-TCCEEECCTTCCHHHHHH--HHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred HHhc-CCeEEEEeCCCCHHHHHH--HcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 9887 799999999988554433 33589999999999 7777654 24577 89999999999765
No 75
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.90 E-value=1.1e-21 Score=203.29 Aligned_cols=159 Identities=19% Similarity=0.214 Sum_probs=110.2
Q ss_pred CCcHHHHHHHHHHh---------cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHH
Q 013858 143 RPTSIQAQAMPVAL---------SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKE 213 (435)
Q Consensus 143 ~p~~~Q~~~i~~~~---------~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~ 213 (435)
.++|+|.+++.++. .++.+|++.+||+|||+++ +.++..+....+...+...++||++|+ .|+.||.++
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~-i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E 132 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQC-ITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNE 132 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHH-HHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHH-HHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHH
Confidence 57999999999875 3456999999999999886 444444444433333334579999997 888999999
Q ss_pred HHHHhhcCCCceEEEEECCCCHHHH--HHHHh------CCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCC
Q 013858 214 VKALSRSLDSFKTAIVVGGTNIAEQ--RSELR------GGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMG 285 (435)
Q Consensus 214 ~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~------~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~ 285 (435)
+.++... .+.+..+++|...... ..... ...+|+|+|++.+..... .+...++++||+||||++.+..
T Consensus 133 ~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~--~l~~~~~~~vI~DEaH~ikn~~ 208 (644)
T 1z3i_X 133 VGKWLGG--RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE--VLHKGKVGLVICDEGHRLKNSD 208 (644)
T ss_dssp HHHHHGG--GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT--TTTTSCCCEEEETTGGGCCTTC
T ss_pred HHHHcCC--CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH--HhhcCCccEEEEECceecCChh
Confidence 9998754 3566666666533211 11111 136899999999976532 3444678999999999987754
Q ss_pred CHHHHHHHHHhCCCCCeEEEEcccc
Q 013858 286 FEPQIREVMQNLPDKHQTLLFSATM 310 (435)
Q Consensus 286 ~~~~i~~i~~~~~~~~q~i~~SATl 310 (435)
......+..+.. ...+++|||+
T Consensus 209 --~~~~~al~~l~~-~~rl~LTgTP 230 (644)
T 1z3i_X 209 --NQTYLALNSMNA-QRRVLISGTP 230 (644)
T ss_dssp --HHHHHHHHHHCC-SEEEEECSSC
T ss_pred --hHHHHHHHhccc-CcEEEEecCc
Confidence 223333334443 3579999997
No 76
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.89 E-value=3e-23 Score=193.79 Aligned_cols=156 Identities=15% Similarity=0.136 Sum_probs=124.4
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcC
Q 013858 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (435)
Q Consensus 142 ~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~ 221 (435)
..|+++|.++++.++.+++.++++|||+|||++++.++...+... +.++||++|+++|+.||.+++++++...
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~-------~~~~lil~Pt~~L~~q~~~~l~~~~~~~ 184 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY-------EGKILIIVPTTALTTQMADDFVDYRLFS 184 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHC-------SSEEEEECSSHHHHHHHHHHHHHHTSCC
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcC-------CCeEEEEECCHHHHHHHHHHHHHhcccc
Confidence 379999999999999888899999999999999977776655431 3489999999999999999999987543
Q ss_pred CCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCCCHHHHHHHHHhCCCCC
Q 013858 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKH 301 (435)
Q Consensus 222 ~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~ 301 (435)
...+..++++..... ....+.+|+|+||+.+.+.. ...+.++++|||||||++. ...+..++..+....
T Consensus 185 -~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~~---~~~~~~~~~vIiDEaH~~~----~~~~~~il~~~~~~~ 253 (282)
T 1rif_A 185 -HAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQP---KEWFSQFGMMMNDECHLAT----GKSISSIISGLNNCM 253 (282)
T ss_dssp -GGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTSC---GGGGGGEEEEEEETGGGCC----HHHHHHHTTTCTTCC
T ss_pred -cceEEEEeCCCcchh---hhccCCcEEEEchHHHHhhH---HHHHhhCCEEEEECCccCC----cccHHHHHHHhhcCC
Confidence 567777777764322 12245899999999875432 2346789999999999985 357888888887789
Q ss_pred eEEEEcccccHHHH
Q 013858 302 QTLLFSATMPVEIE 315 (435)
Q Consensus 302 q~i~~SATl~~~~~ 315 (435)
++++||||++....
T Consensus 254 ~~l~lSATp~~~~~ 267 (282)
T 1rif_A 254 FKFGLSGSLRDGKA 267 (282)
T ss_dssp EEEEECSSCCTTST
T ss_pred eEEEEeCCCCCcch
Confidence 99999999976543
No 77
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.88 E-value=7.4e-21 Score=191.36 Aligned_cols=268 Identities=16% Similarity=0.182 Sum_probs=192.5
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcC
Q 013858 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (435)
Q Consensus 142 ~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~ 221 (435)
.+|+++|..+...+..|+ |..+.||.|||+++.+|++...+. |..+.|++|++.||.+-++.+..+...+
T Consensus 74 ~r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~--------G~~vhVvT~ndyLA~rdae~m~~l~~~L 143 (822)
T 3jux_A 74 MRPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALI--------GKGVHLVTVNDYLARRDALWMGPVYLFL 143 (822)
T ss_dssp CCCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTT--------SSCEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhc--------CCceEEEeccHHHHHhHHHHHHHHHHHh
Confidence 479999999999999888 999999999999999999877555 6779999999999999999999999887
Q ss_pred CCceEEEEECC--------------------------------------------------CCHHHHHHHHhCCCcEEEE
Q 013858 222 DSFKTAIVVGG--------------------------------------------------TNIAEQRSELRGGVSIVVA 251 (435)
Q Consensus 222 ~~~~~~~~~g~--------------------------------------------------~~~~~~~~~~~~~~~I~v~ 251 (435)
++.+++++.. ....+....+. |+|.++
T Consensus 144 -glsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY~--~DItYg 220 (822)
T 3jux_A 144 -GLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAYL--CDVTYG 220 (822)
T ss_dssp -TCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHHH--SSEEEE
T ss_pred -CCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHhc--CCCEEc
Confidence 7999999982 22222333333 799999
Q ss_pred CcHHH-HHHHHc------CCCCCCCceEEEEecCCc-ccCC--------C----CH------------------------
Q 013858 252 TPGRF-LDHLQQ------GNTSLSRVSFVILDEADR-MLDM--------G----FE------------------------ 287 (435)
Q Consensus 252 T~~~l-~~~l~~------~~~~l~~~~~iIiDEah~-~~~~--------~----~~------------------------ 287 (435)
|..-| .+++.. .....+.+.+.||||+|. +++. | ..
T Consensus 221 Tn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vdek 300 (822)
T 3jux_A 221 TNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEK 300 (822)
T ss_dssp EHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECCS
T ss_pred cCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEcc
Confidence 99877 333332 123356789999999994 3330 0 00
Q ss_pred --------HH---HHHHH---------------------H-h--CC----------------------------------
Q 013858 288 --------PQ---IREVM---------------------Q-N--LP---------------------------------- 298 (435)
Q Consensus 288 --------~~---i~~i~---------------------~-~--~~---------------------------------- 298 (435)
.. +..++ . + +.
T Consensus 301 ~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQ 380 (822)
T 3jux_A 301 ARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQ 380 (822)
T ss_dssp SSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHHH
T ss_pred cCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHHH
Confidence 00 00000 0 0 00
Q ss_pred ---------------------------CCCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCCCCCceEE-EEEEcChh
Q 013858 299 ---------------------------DKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQ-ILEKVSEN 350 (435)
Q Consensus 299 ---------------------------~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~-~~~~~~~~ 350 (435)
-=.++.+||+|...+...+.+.|.-+ .+. .+...+...+.+ ...+....
T Consensus 381 aiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~--vv~-IPtnkp~~R~d~~d~vy~t~~ 457 (822)
T 3jux_A 381 AIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGME--VVV-IPTHKPMIRKDHDDLVFRTQK 457 (822)
T ss_dssp HHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCC--EEE-CCCSSCCCCEECCCEEESSHH
T ss_pred HHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCe--EEE-ECCCCCcceeecCcEEEecHH
Confidence 00367999999988877776666332 222 233333344443 35677889
Q ss_pred hHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEE
Q 013858 351 EKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVF 430 (435)
Q Consensus 351 ~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVa 430 (435)
+|...+++.+......+ .++||||++++.++.|++.|++.|+.+..+||+..+.+|..+...++.| .|+||
T Consensus 458 eK~~al~~~I~~~~~~g-------qpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVA 528 (822)
T 3jux_A 458 EKYEKIVEEIEKRYKKG-------QPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIA 528 (822)
T ss_dssp HHHHHHHHHHHHHHHHT-------CCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEE
T ss_pred HHHHHHHHHHHHHhhCC-------CCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEE
Confidence 99999999887765332 3599999999999999999999999999999995555555555555555 79999
Q ss_pred cCCC
Q 013858 431 SYKL 434 (435)
Q Consensus 431 T~~L 434 (435)
||+.
T Consensus 529 TdmA 532 (822)
T 3jux_A 529 TNMA 532 (822)
T ss_dssp ETTT
T ss_pred cchh
Confidence 9974
No 78
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.82 E-value=1e-19 Score=164.93 Aligned_cols=139 Identities=19% Similarity=0.158 Sum_probs=108.4
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcC
Q 013858 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (435)
Q Consensus 142 ~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~ 221 (435)
..|+++|.+++..++.++++++++|||+|||.+++.++... +.+++|++|+++|+.|+.+.++++
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-----------~~~~liv~P~~~L~~q~~~~~~~~---- 156 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----------STPTLIVVPTLALAEQWKERLGIF---- 156 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS-----------CSCEEEEESSHHHHHHHHHHHGGG----
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc-----------CCCEEEEeCCHHHHHHHHHHHHhC----
Confidence 57999999999999999899999999999999886655432 357999999999999999888774
Q ss_pred CCce-EEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCCCHHHHHHHHHhCCCC
Q 013858 222 DSFK-TAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDK 300 (435)
Q Consensus 222 ~~~~-~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~ 300 (435)
++. +..+.|+.. ...+|+|+|++.+...... ...++++|||||||++.+..+ ..++..++ .
T Consensus 157 -~~~~v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~---~~~~~~llIiDEaH~l~~~~~----~~i~~~~~-~ 218 (237)
T 2fz4_A 157 -GEEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESY----VQIAQMSI-A 218 (237)
T ss_dssp -CGGGEEEESSSCB---------CCCSEEEEEHHHHHHTHHH---HTTTCSEEEEECSSCCCTTTH----HHHHHTCC-C
T ss_pred -CCCeEEEEeCCCC---------CcCCEEEEeHHHHHhhHHH---hcccCCEEEEECCccCCChHH----HHHHHhcc-C
Confidence 456 666666553 3579999999998766542 134689999999999876543 34555554 5
Q ss_pred CeEEEEcccccHH
Q 013858 301 HQTLLFSATMPVE 313 (435)
Q Consensus 301 ~q~i~~SATl~~~ 313 (435)
.+++++|||++..
T Consensus 219 ~~~l~LSATp~r~ 231 (237)
T 2fz4_A 219 PFRLGLTATFERE 231 (237)
T ss_dssp SEEEEEEESCC--
T ss_pred CEEEEEecCCCCC
Confidence 6789999999653
No 79
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.75 E-value=9.4e-18 Score=170.20 Aligned_cols=127 Identities=20% Similarity=0.213 Sum_probs=87.3
Q ss_pred CCCCCCcHHHHHHHHH----HhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHH
Q 013858 139 HEYTRPTSIQAQAMPV----ALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEV 214 (435)
Q Consensus 139 ~~~~~p~~~Q~~~i~~----~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~ 214 (435)
.|+ .|+++|.+++.. +..|+++++.+|||+|||++|++|++.. +++++|++||++|+.|+.+.+
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~-----------~~~~~~~~~t~~l~~q~~~~~ 71 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL-----------KKKVLIFTRTHSQLDSIYKNA 71 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH-----------TCEEEEEESCHHHHHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC-----------CCcEEEEcCCHHHHHHHHHHH
Confidence 455 789999998754 4578999999999999999999998764 578999999999999999887
Q ss_pred HHHhhcCCCceEEEEECCCCH--------H------------------------HH---------------HHHHhCCCc
Q 013858 215 KALSRSLDSFKTAIVVGGTNI--------A------------------------EQ---------------RSELRGGVS 247 (435)
Q Consensus 215 ~~~~~~~~~~~~~~~~g~~~~--------~------------------------~~---------------~~~~~~~~~ 247 (435)
..+ ++++..+.|.... . +. .+....+++
T Consensus 72 ~~l-----~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~ad 146 (540)
T 2vl7_A 72 KLL-----GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKD 146 (540)
T ss_dssp GGG-----TCCEEEC---------------------------------------------------------CTTGGGCS
T ss_pred Hhc-----CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCC
Confidence 764 2344443332110 0 00 011124579
Q ss_pred EEEECcHHHHHHHHcCCC-------CCCCceEEEEecCCccc
Q 013858 248 IVVATPGRFLDHLQQGNT-------SLSRVSFVILDEADRML 282 (435)
Q Consensus 248 I~v~T~~~l~~~l~~~~~-------~l~~~~~iIiDEah~~~ 282 (435)
|+|+|+..|++....+.+ .+.+..++||||||++.
T Consensus 147 iVV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 147 VIAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp EEEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred EEEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHH
Confidence 999999999875443221 24678999999999873
No 80
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.74 E-value=2e-16 Score=163.85 Aligned_cols=120 Identities=23% Similarity=0.154 Sum_probs=84.7
Q ss_pred CCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEE
Q 013858 300 KHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIV 379 (435)
Q Consensus 300 ~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lV 379 (435)
..|++++|||++...... ....+.. ........... +...+...+...++..+.+... .+.++||
T Consensus 380 ~~q~i~~SAT~~~~~~~~----~~~~~~~-~~r~~~l~~p~---i~v~~~~~~~~~Ll~~l~~~~~-------~~~~vlV 444 (664)
T 1c4o_A 380 VSQVVFVSATPGPFELAH----SGRVVEQ-IIRPTGLLDPL---VRVKPTENQILDLMEGIRERAA-------RGERTLV 444 (664)
T ss_dssp CSEEEEEESSCCHHHHHH----CSEEEEE-CSCTTCCCCCE---EEEECSTTHHHHHHHHHHHHHH-------TTCEEEE
T ss_pred cCCEEEEecCCCHHHHHh----hhCeeee-eeccCCCCCCe---EEEecccchHHHHHHHHHHHHh-------cCCEEEE
Confidence 578999999997643211 1111111 11111111111 1122334556666666655442 2346999
Q ss_pred EeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 380 FVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 380 F~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
||+++..++.|++.|+..|+.+..+||++++.+|..+++.|+.|+.+|||||++|
T Consensus 445 f~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l 499 (664)
T 1c4o_A 445 TVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLL 499 (664)
T ss_dssp ECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCC
T ss_pred EECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChh
Confidence 9999999999999999999999999999999999999999999999999999986
No 81
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.70 E-value=6.3e-16 Score=159.96 Aligned_cols=121 Identities=17% Similarity=0.166 Sum_probs=85.6
Q ss_pred CCCeEEEEcccccHHHHHHHHHHcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEE
Q 013858 299 DKHQTLLFSATMPVEIEALAQEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTI 378 (435)
Q Consensus 299 ~~~q~i~~SATl~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~l 378 (435)
...|+++||||++...... ....+......... .... +...+...+...++..+.... ..+.++|
T Consensus 385 ~~~q~i~~SAT~~~~~~~~----~~~~~~~~~r~~~l-~~p~---i~v~~~~~~~~~Ll~~l~~~~-------~~~~~vl 449 (661)
T 2d7d_A 385 HMHNIVYVSATPGPYEIEH----TDEMVEQIIRPTGL-LDPL---IDVRPIEGQIDDLIGEIQARI-------ERNERVL 449 (661)
T ss_dssp TCSEEEEECSSCCHHHHHH----CSSCEEECCCTTCC-CCCE---EEEECSTTHHHHHHHHHHHHH-------TTTCEEE
T ss_pred cCCCEEEEecCCChhHHHh----hhCeeeeeecccCC-CCCe---EEEecccchHHHHHHHHHHHH-------hcCCeEE
Confidence 3678999999997543221 12222221111111 1111 112233445566666665543 2345799
Q ss_pred EEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 379 VFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 379 VF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
|||+++..++.|++.|+..|+.+..+||++++.+|..+++.|+.|+.+|||||+++
T Consensus 450 Vf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l 505 (661)
T 2d7d_A 450 VTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLL 505 (661)
T ss_dssp EECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCC
T ss_pred EEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchh
Confidence 99999999999999999999999999999999999999999999999999999986
No 82
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.64 E-value=8.4e-16 Score=156.43 Aligned_cols=129 Identities=16% Similarity=0.107 Sum_probs=101.3
Q ss_pred CCcHHHHHHHHHH----hcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHh
Q 013858 143 RPTSIQAQAMPVA----LSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (435)
Q Consensus 143 ~p~~~Q~~~i~~~----~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~ 218 (435)
.|+|+|.+.+..+ ..|+++++.+|||+|||++|++|++.. +++++|++||++|+.|+.+.+..+.
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~-----------~~~v~i~~pt~~l~~q~~~~~~~l~ 71 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV-----------KPKVLFVVRTHNEFYPIYRDLTKIR 71 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH-----------CSEEEEEESSGGGHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC-----------CCeEEEEcCCHHHHHHHHHHHHHHh
Confidence 6899999987754 478999999999999999999999872 5789999999999999999998887
Q ss_pred hcCCCceEEEEECCCCH---------------------------------HHHH------------------HHHhCCCc
Q 013858 219 RSLDSFKTAIVVGGTNI---------------------------------AEQR------------------SELRGGVS 247 (435)
Q Consensus 219 ~~~~~~~~~~~~g~~~~---------------------------------~~~~------------------~~~~~~~~ 247 (435)
... ++++..+.|..+. .... +....+++
T Consensus 72 ~~~-~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~ad 150 (551)
T 3crv_A 72 EKR-NITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKAD 150 (551)
T ss_dssp CSS-CCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCS
T ss_pred hhc-CccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCC
Confidence 654 5778777663211 1111 22345689
Q ss_pred EEEECcHHHHHHHHcCCCCC-CCceEEEEecCCcccC
Q 013858 248 IVVATPGRFLDHLQQGNTSL-SRVSFVILDEADRMLD 283 (435)
Q Consensus 248 I~v~T~~~l~~~l~~~~~~l-~~~~~iIiDEah~~~~ 283 (435)
|+|+|++.|++...+..+.+ .+..++||||||++.+
T Consensus 151 IVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 151 VIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp EEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred EEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 99999999988765544333 4778999999998876
No 83
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.61 E-value=3.4e-14 Score=145.83 Aligned_cols=82 Identities=22% Similarity=0.220 Sum_probs=68.6
Q ss_pred CCcHHHHHHHHH----HhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHh
Q 013858 143 RPTSIQAQAMPV----ALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (435)
Q Consensus 143 ~p~~~Q~~~i~~----~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~ 218 (435)
.|++.|.+.+.. +.+|+++++.+|||+|||++|++|++.++... +++++|++||++++.|+.+.+..+.
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~-------~~kvli~t~T~~l~~Qi~~el~~l~ 75 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER-------KLKVLYLVRTNSQEEQVIKELRSLS 75 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH-------TCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc-------CCeEEEECCCHHHHHHHHHHHHHHh
Confidence 589999999864 45789999999999999999999999987653 5789999999999999999999988
Q ss_pred hcCCCceEEEEECC
Q 013858 219 RSLDSFKTAIVVGG 232 (435)
Q Consensus 219 ~~~~~~~~~~~~g~ 232 (435)
... .+++..+.|+
T Consensus 76 ~~~-~~~~~~l~gr 88 (620)
T 4a15_A 76 STM-KIRAIPMQGR 88 (620)
T ss_dssp HHS-CCCEEECCCH
T ss_pred hcc-CeEEEEEECC
Confidence 765 5777666654
No 84
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.44 E-value=3.4e-13 Score=117.62 Aligned_cols=106 Identities=30% Similarity=0.473 Sum_probs=79.6
Q ss_pred HHHcCCCeEEEeCCCCCCCCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCC
Q 013858 319 QEYLTDPVQVKVGKVSSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEG 398 (435)
Q Consensus 319 ~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~ 398 (435)
..|+.+|..+.++.......++.|.+..+....|...|.+.+.. .++++||||+++..++.+++.|+..|
T Consensus 9 ~~~~~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~----------~~~~~lVF~~~~~~~~~l~~~L~~~g 78 (191)
T 2p6n_A 9 SGVDLGTENLYFQSMGAASLDVIQEVEYVKEEAKMVYLLECLQK----------TPPPVLIFAEKKADVDAIHEYLLLKG 78 (191)
T ss_dssp -------------------CCSEEEEEECCGGGHHHHHHHHHTT----------SCSCEEEECSCHHHHHHHHHHHHHHT
T ss_pred ccccCCCEEEEECCCCCCCcCceEEEEEcChHHHHHHHHHHHHh----------CCCCEEEEECCHHHHHHHHHHHHHcC
Confidence 35778898888887777788999999999999999988887743 13469999999999999999999999
Q ss_pred CcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 399 LHAVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 399 ~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
+.+..+||++++.+|..+++.|++|+.+|||||+++
T Consensus 79 ~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~ 114 (191)
T 2p6n_A 79 VEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVA 114 (191)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECHHH
T ss_pred CcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCch
Confidence 999999999999999999999999999999999853
No 85
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.39 E-value=3.9e-12 Score=109.04 Aligned_cols=89 Identities=29% Similarity=0.440 Sum_probs=80.6
Q ss_pred CCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHH
Q 013858 337 TANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESA 416 (435)
Q Consensus 337 ~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~ 416 (435)
...+.|++..+....|...|.+++.. .+++++||||+++..++.+++.|+..|+.+..+||++++.+|..+
T Consensus 3 ~~~i~q~~~~~~~~~K~~~L~~ll~~---------~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~ 73 (172)
T 1t5i_A 3 LHGLQQYYVKLKDNEKNRKLFDLLDV---------LEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSR 73 (172)
T ss_dssp --CCEEEEEECCGGGHHHHHHHHHHH---------SCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHH
T ss_pred cCCeEEEEEECChHHHHHHHHHHHHh---------CCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHH
Confidence 35688999999999999998888764 345679999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCcEEEEcCCC
Q 013858 417 LRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 417 ~~~f~~g~~~VLVaT~~L 434 (435)
++.|++|+.+|||||+++
T Consensus 74 ~~~f~~g~~~vLvaT~~~ 91 (172)
T 1t5i_A 74 YQQFKDFQRRILVATNLF 91 (172)
T ss_dssp HHHHHTTSCSEEEESSCC
T ss_pred HHHHHCCCCcEEEECCch
Confidence 999999999999999986
No 86
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.38 E-value=3.8e-12 Score=108.13 Aligned_cols=90 Identities=26% Similarity=0.365 Sum_probs=82.0
Q ss_pred CCCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHH
Q 013858 336 PTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRES 415 (435)
Q Consensus 336 ~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~ 415 (435)
...++.|.+..+....|...|.+++... .++++||||+++..++.+++.|+..|+.+..+||++++.+|..
T Consensus 6 ~~~~i~~~~~~~~~~~K~~~L~~ll~~~---------~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~ 76 (163)
T 2hjv_A 6 TTRNIEHAVIQVREENKFSLLKDVLMTE---------NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFD 76 (163)
T ss_dssp CCCCEEEEEEECCGGGHHHHHHHHHHHH---------CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHH
T ss_pred CcccceEEEEECChHHHHHHHHHHHHhc---------CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHH
Confidence 4567899999999999999998888652 3457999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCcEEEEcCCC
Q 013858 416 ALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 416 ~~~~f~~g~~~VLVaT~~L 434 (435)
+++.|++|+.+|||||+++
T Consensus 77 ~~~~f~~g~~~vlv~T~~~ 95 (163)
T 2hjv_A 77 VMNEFKRGEYRYLVATDVA 95 (163)
T ss_dssp HHHHHHTTSCSEEEECGGG
T ss_pred HHHHHHcCCCeEEEECChh
Confidence 9999999999999999875
No 87
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.34 E-value=7.8e-12 Score=107.52 Aligned_cols=89 Identities=17% Similarity=0.287 Sum_probs=79.5
Q ss_pred CCceEEEEEEcChhh-HHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHH
Q 013858 337 TANVIQILEKVSENE-KVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRES 415 (435)
Q Consensus 337 ~~~i~~~~~~~~~~~-k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~ 415 (435)
..++.|.+..++... |...+.+++.. .+++++||||+++..++.++..|+..|+.+..+||++++.+|..
T Consensus 5 ~~~i~q~~~~~~~~~~K~~~L~~ll~~---------~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~ 75 (175)
T 2rb4_A 5 LNNIRQYYVLCEHRKDKYQALCNIYGS---------ITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRAS 75 (175)
T ss_dssp BCCEEEEEEECSSHHHHHHHHHHHHTT---------SCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHH
T ss_pred cCCceEEEEEcCChHhHHHHHHHHHHh---------CCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHH
Confidence 457899999988655 88888777643 34567999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCcEEEEcCCC
Q 013858 416 ALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 416 ~~~~f~~g~~~VLVaT~~L 434 (435)
+++.|++|+.+|||||+++
T Consensus 76 ~~~~f~~g~~~vLvaT~~~ 94 (175)
T 2rb4_A 76 IIQRFRDGKEKVLITTNVC 94 (175)
T ss_dssp HHHHHHTTSCSEEEECCSC
T ss_pred HHHHHHcCCCeEEEEecch
Confidence 9999999999999999986
No 88
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.34 E-value=5e-12 Score=109.70 Aligned_cols=93 Identities=39% Similarity=0.517 Sum_probs=73.7
Q ss_pred CCCCCceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHH
Q 013858 334 SSPTANVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDR 413 (435)
Q Consensus 334 ~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R 413 (435)
.....++.|.+..+....|...|.+++... .+++++||||+++..++.+++.|+..|+.+..+||++++.+|
T Consensus 14 ~~~~~~i~q~~~~v~~~~K~~~L~~ll~~~--------~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r 85 (185)
T 2jgn_A 14 GSTSENITQKVVWVEESDKRSFLLDLLNAT--------GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDR 85 (185)
T ss_dssp --CCTTEEEEEEECCGGGHHHHHHHHHHHC---------CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------
T ss_pred CCCCCCceEEEEEeCcHHHHHHHHHHHHhc--------CCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHH
Confidence 344678999999999999999998888652 245679999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCcEEEEcCCC
Q 013858 414 ESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 414 ~~~~~~f~~g~~~VLVaT~~L 434 (435)
..+++.|++|+.+|||||+++
T Consensus 86 ~~~~~~f~~g~~~vLvaT~~~ 106 (185)
T 2jgn_A 86 EEALHQFRSGKSPILVATAVA 106 (185)
T ss_dssp CHHHHHHHHTSSSEEEEEC--
T ss_pred HHHHHHHHcCCCeEEEEcChh
Confidence 999999999999999999975
No 89
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.33 E-value=9.4e-12 Score=105.89 Aligned_cols=87 Identities=23% Similarity=0.408 Sum_probs=77.7
Q ss_pred ceEEEEEEcChhh-HHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHH
Q 013858 339 NVIQILEKVSENE-KVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESAL 417 (435)
Q Consensus 339 ~i~~~~~~~~~~~-k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~ 417 (435)
++.|.+..+.... |...+.+.+.. .+++++||||+++..++.+++.|+..++.+..+||++++.+|..++
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~---------~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~ 73 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDS---------ISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIM 73 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHH---------TTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHH
T ss_pred CcEEEEEECCcchhHHHHHHHHHHh---------CCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHH
Confidence 5778888887776 88888887765 3456799999999999999999999999999999999999999999
Q ss_pred HHHHcCCCcEEEEcCCC
Q 013858 418 RDFRNGSTNILVFSYKL 434 (435)
Q Consensus 418 ~~f~~g~~~VLVaT~~L 434 (435)
+.|++|+.+|||||+++
T Consensus 74 ~~f~~g~~~vlv~T~~~ 90 (165)
T 1fuk_A 74 KEFRSGSSRILISTDLL 90 (165)
T ss_dssp HHHHTTSCSEEEEEGGG
T ss_pred HHHHcCCCEEEEEcChh
Confidence 99999999999999875
No 90
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.24 E-value=3.4e-11 Score=106.81 Aligned_cols=86 Identities=27% Similarity=0.348 Sum_probs=76.8
Q ss_pred eEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHH
Q 013858 340 VIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRD 419 (435)
Q Consensus 340 i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~ 419 (435)
+.+....+....|...+.+.+.. .+++++||||+++.+++.+++.|+..|+.+..+||++++.+|..+++.
T Consensus 6 ~~~~~~~~~~~~k~~~l~~ll~~---------~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~ 76 (212)
T 3eaq_A 6 YEEEAVPAPVRGRLEVLSDLLYV---------ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGA 76 (212)
T ss_dssp BCCEEEECCTTSHHHHHHHHHHH---------HCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHH
T ss_pred eeeeEEeCCHHHHHHHHHHHHHh---------CCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHH
Confidence 44566677888899998888764 235679999999999999999999999999999999999999999999
Q ss_pred HHcCCCcEEEEcCCC
Q 013858 420 FRNGSTNILVFSYKL 434 (435)
Q Consensus 420 f~~g~~~VLVaT~~L 434 (435)
|++|+.+|||||+++
T Consensus 77 f~~g~~~vlvaT~~~ 91 (212)
T 3eaq_A 77 FRQGEVRVLVATDVA 91 (212)
T ss_dssp HHSSSCCEEEECTTT
T ss_pred HHCCCCeEEEecChh
Confidence 999999999999986
No 91
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.22 E-value=4.3e-11 Score=111.49 Aligned_cols=87 Identities=25% Similarity=0.346 Sum_probs=79.1
Q ss_pred ceEEEEEEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHH
Q 013858 339 NVIQILEKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALR 418 (435)
Q Consensus 339 ~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~ 418 (435)
.+.+.+..+....|...+...+... .++++||||+++.+++.+++.|+..|+.+..+||++++.+|..+++
T Consensus 2 ~v~~~~i~~~~~~K~~~L~~ll~~~---------~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~ 72 (300)
T 3i32_A 2 TYEEEAVPAPVRGRLEVLSDLLYVA---------SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMG 72 (300)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHH---------CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHH
T ss_pred ceEEEEEECCHHHHHHHHHHHHHhc---------CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHH
Confidence 3578888889999999998887653 2567999999999999999999999999999999999999999999
Q ss_pred HHHcCCCcEEEEcCCC
Q 013858 419 DFRNGSTNILVFSYKL 434 (435)
Q Consensus 419 ~f~~g~~~VLVaT~~L 434 (435)
.|++|+.+||||||++
T Consensus 73 ~f~~g~~~vLVaT~va 88 (300)
T 3i32_A 73 AFRQGEVRVLVATDVA 88 (300)
T ss_dssp HHHHTSCCEEEECSTT
T ss_pred HhhcCCceEEEEechh
Confidence 9999999999999986
No 92
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=98.68 E-value=9.5e-12 Score=106.41 Aligned_cols=87 Identities=25% Similarity=0.381 Sum_probs=75.8
Q ss_pred ceEEEEEEcCh-hhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHH
Q 013858 339 NVIQILEKVSE-NEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESAL 417 (435)
Q Consensus 339 ~i~~~~~~~~~-~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~ 417 (435)
++.|.+..+.. ..|...|.+++.. ..++++||||+++..++.+++.|+..|+.+..+||++++.+|..++
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~---------~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~ 73 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQ---------PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAI 73 (170)
Confidence 45667777776 7788877777754 2345699999999999999999999999999999999999999999
Q ss_pred HHHHcCCCcEEEEcCCC
Q 013858 418 RDFRNGSTNILVFSYKL 434 (435)
Q Consensus 418 ~~f~~g~~~VLVaT~~L 434 (435)
+.|++|+.+|||||+++
T Consensus 74 ~~f~~g~~~vLvaT~~~ 90 (170)
T 2yjt_D 74 KRLTEGRVNVLVATDVA 90 (170)
Confidence 99999999999999975
No 93
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.98 E-value=1.7e-09 Score=110.91 Aligned_cols=144 Identities=22% Similarity=0.300 Sum_probs=88.2
Q ss_pred cHHHHHHHHHHhcCCCEEEEccCCCchhH--HhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcCC
Q 013858 145 TSIQAQAMPVALSGRDLLGCAETGSGKTA--AFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 222 (435)
Q Consensus 145 ~~~Q~~~i~~~~~~~~vii~~~TGsGKT~--~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~~ 222 (435)
.+.|+.+++.++.++.+++.|++|+|||+ .++++.+..+.. ..+.++++++||..+|.++.+.+...+...+
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~------~~~~~vll~APTg~AA~~L~e~~~~~~~~l~ 224 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD------GERCRIRLAAPTGKAAARLTESLGKALRQLP 224 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS------SCCCCEEEEBSSHHHHHHHHHHHTHHHHHSS
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh------cCCCeEEEEeCChhHHHHHHHHHHHHHhcCC
Confidence 78999999999999999999999999995 344454443211 1256899999999999999888876655431
Q ss_pred CceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCe
Q 013858 223 SFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQ 302 (435)
Q Consensus 223 ~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q 302 (435)
+...... +... ....+ ..++-.+|+.. .. ........++++||||||+ |++ ...+..++..++...|
T Consensus 225 -l~~~~~~-~~~~--~~~Ti---h~ll~~~~~~~-~~-~~~~~~~l~~d~lIIDEAs-ml~---~~~~~~Ll~~l~~~~~ 291 (608)
T 1w36_D 225 -LTDEQKK-RIPE--DASTL---HRLLGAQPGSQ-RL-RHHAGNPLHLDVLVVDEAS-MID---LPMMSRLIDALPDHAR 291 (608)
T ss_dssp -CCSCCCC-SCSC--CCBTT---TSCC-------------CTTSCCSCSEEEECSGG-GCB---HHHHHHHHHTCCTTCE
T ss_pred -CCHHHHh-ccch--hhhhh---HhhhccCCCch-HH-HhccCCCCCCCEEEEechh-hCC---HHHHHHHHHhCCCCCE
Confidence 2110000 0000 00000 01222233221 11 1111223378999999999 444 4567888888988899
Q ss_pred EEEEc
Q 013858 303 TLLFS 307 (435)
Q Consensus 303 ~i~~S 307 (435)
+|++.
T Consensus 292 liLvG 296 (608)
T 1w36_D 292 VIFLG 296 (608)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 88875
No 94
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.49 E-value=2.9e-07 Score=95.29 Aligned_cols=67 Identities=24% Similarity=0.310 Sum_probs=54.5
Q ss_pred CCcHHHHHHHHHHhcCCC-EEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHH
Q 013858 143 RPTSIQAQAMPVALSGRD-LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (435)
Q Consensus 143 ~p~~~Q~~~i~~~~~~~~-vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~ 217 (435)
.+.+-|++|+..++..++ .+|.||.|+|||.+. +-++.++... +.++|+++||...|.++.+++...
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti-~~~I~~l~~~-------~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTV-VEIILQAVKQ-------GLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHH-HHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHH-HHHHHHHHhC-------CCeEEEEcCchHHHHHHHHHHHhc
Confidence 578999999999987765 899999999999874 4455555553 568999999999999998877654
No 95
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.45 E-value=1.1e-06 Score=89.22 Aligned_cols=126 Identities=16% Similarity=0.170 Sum_probs=80.1
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcC
Q 013858 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (435)
Q Consensus 142 ~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~ 221 (435)
..+++.|+.++..++.++.+++.|+.|+|||++. ..++..+... +.++++++||..++..+.+...
T Consensus 188 ~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i-~~l~~~l~~~-------g~~Vl~~ApT~~Aa~~L~e~~~------ 253 (574)
T 3e1s_A 188 KGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTT-KAVADLAESL-------GLEVGLCAPTGKAARRLGEVTG------ 253 (574)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHH-HHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHHT------
T ss_pred CCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHH-HHHHHHHHhc-------CCeEEEecCcHHHHHHhHhhhc------
Confidence 3578999999999999899999999999999853 3344443332 5679999999988776644321
Q ss_pred CCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCCCHHHHHHHHHhCCCCC
Q 013858 222 DSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKH 301 (435)
Q Consensus 222 ~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~ 301 (435)
.....+. .+. .... + ...........+++||||||+.+- ...+..++..++...
T Consensus 254 --~~a~Tih----------~ll---~~~~-~------~~~~~~~~~~~~dvlIIDEasml~----~~~~~~Ll~~~~~~~ 307 (574)
T 3e1s_A 254 --RTASTVH----------RLL---GYGP-Q------GFRHNHLEPAPYDLLIVDEVSMMG----DALMLSLLAAVPPGA 307 (574)
T ss_dssp --SCEEEHH----------HHT---TEET-T------EESCSSSSCCSCSEEEECCGGGCC----HHHHHHHHTTSCTTC
T ss_pred --ccHHHHH----------HHH---cCCc-c------hhhhhhcccccCCEEEEcCccCCC----HHHHHHHHHhCcCCC
Confidence 1111100 000 0000 0 000112234478999999999652 456777777787777
Q ss_pred eEEEEc
Q 013858 302 QTLLFS 307 (435)
Q Consensus 302 q~i~~S 307 (435)
++|++-
T Consensus 308 ~lilvG 313 (574)
T 3e1s_A 308 RVLLVG 313 (574)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 777653
No 96
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=98.45 E-value=7e-07 Score=81.84 Aligned_cols=81 Identities=16% Similarity=0.165 Sum_probs=69.9
Q ss_pred cChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhC-CCcEEEecCCCCHHHHHHHHHHHHcC-C
Q 013858 347 VSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAE-GLHAVALHGGRNQSDRESALRDFRNG-S 424 (435)
Q Consensus 347 ~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~-~~~v~~lh~~~~~~~R~~~~~~f~~g-~ 424 (435)
.....|...+.+.+.+... .+.++||||++...++.+...|... |+.+..+||++++.+|..+++.|++| .
T Consensus 92 ~~~s~K~~~L~~ll~~~~~-------~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~ 164 (271)
T 1z5z_A 92 VRRSGKMIRTMEIIEEALD-------EGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPS 164 (271)
T ss_dssp STTCHHHHHHHHHHHHHHH-------TTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTT
T ss_pred cccCHHHHHHHHHHHHHHh-------CCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCC
Confidence 3457789999988877653 3456999999999999999999885 99999999999999999999999999 7
Q ss_pred Cc-EEEEcCCC
Q 013858 425 TN-ILVFSYKL 434 (435)
Q Consensus 425 ~~-VLVaT~~L 434 (435)
.+ +|+||++.
T Consensus 165 ~~v~L~st~~~ 175 (271)
T 1z5z_A 165 VKFIVLSVKAG 175 (271)
T ss_dssp CCEEEEECCTT
T ss_pred CCEEEEehhhh
Confidence 77 78888864
No 97
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.41 E-value=1.3e-06 Score=86.56 Aligned_cols=136 Identities=12% Similarity=0.144 Sum_probs=79.8
Q ss_pred HHCCCCCCcHHHHHHHHHHhc----CC-CEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHH
Q 013858 137 EFHEYTRPTSIQAQAMPVALS----GR-DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIE 211 (435)
Q Consensus 137 ~~~~~~~p~~~Q~~~i~~~~~----~~-~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~ 211 (435)
.-+.+..+++-|++++..++. ++ .+++.|+.|+|||++. ..++..+...+ ...+++++||...|..+.
T Consensus 19 ~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~~------~~~il~~a~T~~Aa~~l~ 91 (459)
T 3upu_A 19 SHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALISTG------ETGIILAAPTHAAKKILS 91 (459)
T ss_dssp --CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHTT------CCCEEEEESSHHHHHHHH
T ss_pred CCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhcC------CceEEEecCcHHHHHHHH
Confidence 445677889999999997753 24 7999999999999854 45555555432 136999999988877665
Q ss_pred HHHHHHhhcCCCceEEEEECCCCHHHHHHHHh---CCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCCCHH
Q 013858 212 KEVKALSRSLDSFKTAIVVGGTNIAEQRSELR---GGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEP 288 (435)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~~~~ 288 (435)
+.+. .....+. ... ... ......+.. .....+.++++|||||++.+. ..
T Consensus 92 ~~~~--------~~~~T~h------~~~-~~~~~~~~~~~~~~~---------~~~~~~~~~~~iiiDE~~~~~----~~ 143 (459)
T 3upu_A 92 KLSG--------KEASTIH------SIL-KINPVTYEENVLFEQ---------KEVPDLAKCRVLICDEVSMYD----RK 143 (459)
T ss_dssp HHHS--------SCEEEHH------HHH-TEEEEECSSCEEEEE---------CSCCCCSSCSEEEESCGGGCC----HH
T ss_pred hhhc--------cchhhHH------HHh-ccCcccccccchhcc---------cccccccCCCEEEEECchhCC----HH
Confidence 4431 1111110 000 000 000011111 112346689999999999652 34
Q ss_pred HHHHHHHhCCCCCeEEEEc
Q 013858 289 QIREVMQNLPDKHQTLLFS 307 (435)
Q Consensus 289 ~i~~i~~~~~~~~q~i~~S 307 (435)
.+..++..++...+++++.
T Consensus 144 ~~~~l~~~~~~~~~~~~vG 162 (459)
T 3upu_A 144 LFKILLSTIPPWCTIIGIG 162 (459)
T ss_dssp HHHHHHHHSCTTCEEEEEE
T ss_pred HHHHHHHhccCCCEEEEEC
Confidence 5556666666566655543
No 98
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.37 E-value=4.2e-06 Score=86.10 Aligned_cols=70 Identities=21% Similarity=0.210 Sum_probs=55.7
Q ss_pred CCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHH
Q 013858 141 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (435)
Q Consensus 141 ~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~ 217 (435)
...+++.|..++..++.+..++|.||+|+|||++. ..++..+... .+.++++++||...+.++.+.+.+.
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~-~~~i~~l~~~------~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTS-ATIVYHLARQ------GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHH-HHHHHHHHTS------SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHH-HHHHHHHHHc------CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 35678999999999988778999999999999864 4445554432 2567999999999999998877654
No 99
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=98.32 E-value=3e-05 Score=80.24 Aligned_cols=71 Identities=20% Similarity=0.206 Sum_probs=53.5
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHh
Q 013858 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (435)
Q Consensus 142 ~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~ 218 (435)
..+++-|.+++.. .+..++|.|+.|||||.+. +--+.++..... ....++|++++|+.++.++.+++.++.
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l-~~ri~~l~~~~~---~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVL-VHRIAWLMSVEN---CSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHH-HHHHHHHHHTSC---CCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHH-HHHHHHHHHhCC---CChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 4578999999973 3567999999999999874 444445554321 123579999999999999999997764
No 100
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.30 E-value=8.6e-06 Score=85.77 Aligned_cols=70 Identities=21% Similarity=0.255 Sum_probs=56.0
Q ss_pred CCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHH
Q 013858 141 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (435)
Q Consensus 141 ~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~ 217 (435)
+..+.+.|.+|+..++.+..++|.||.|+|||.+. ..++.++... .+.++|+++||...|.++.+++.+.
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i-~~~i~~l~~~------~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTS-ATIVYHLSKI------HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHH-HHHHHHHHHH------HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHH-HHHHHHHHhC------CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 45678999999999988777999999999999864 3444444432 1467999999999999998888765
No 101
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.28 E-value=8.3e-06 Score=85.77 Aligned_cols=70 Identities=21% Similarity=0.210 Sum_probs=55.7
Q ss_pred CCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHH
Q 013858 141 YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (435)
Q Consensus 141 ~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~ 217 (435)
...+.+.|.+++..++.+..++|.||.|+|||++. ..++..+... .+.++++++||...|.++.+.+...
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti-~~~i~~l~~~------~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTS-ATIVYHLARQ------GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHH-HHHHHHHHTT------CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHH-HHHHHHHHHc------CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 45679999999999988878999999999999864 4455554432 2567999999999999988877654
No 102
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.65 E-value=0.00034 Score=66.90 Aligned_cols=74 Identities=15% Similarity=0.113 Sum_probs=56.9
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcCC
Q 013858 143 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 222 (435)
Q Consensus 143 ~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~~ 222 (435)
.+.|+|+..+..+...+-+++..+-+.|||.+....++..+... .+..+++++|++.-|..+.+.++.+....+
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~------~g~~v~~vA~t~~qA~~vf~~i~~mi~~~P 236 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN------KDKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSS------SSCEEEEEESSHHHHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhC------CCCeEEEEeCCHHHHHHHHHHHHHHHHhCh
Confidence 68999999998775556689999999999987655444433331 256799999999999888888888776554
No 103
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.50 E-value=0.0001 Score=65.04 Aligned_cols=91 Identities=18% Similarity=0.166 Sum_probs=53.1
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHH
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIA 236 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~ 236 (435)
.|.-++++|++|+|||+.. +-++..+... +.+++++.|...-- - ...+.... |-.
T Consensus 11 ~G~i~litG~mGsGKTT~l-l~~~~r~~~~-------g~kVli~~~~~d~r--~---~~~i~srl---------G~~--- 65 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAEL-IRRLHRLEYA-------DVKYLVFKPKIDTR--S---IRNIQSRT---------GTS--- 65 (223)
T ss_dssp CCEEEEEECSTTSCHHHHH-HHHHHHHHHT-------TCCEEEEEECCCGG--G---CSSCCCCC---------CCS---
T ss_pred CcEEEEEECCCCCcHHHHH-HHHHHHHHhc-------CCEEEEEEeccCch--H---HHHHHHhc---------CCC---
Confidence 3556899999999999864 4444444442 46788888764210 0 00111111 100
Q ss_pred HHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcc
Q 013858 237 EQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRM 281 (435)
Q Consensus 237 ~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~ 281 (435)
...+.+.+...++..+.. ...-.++++|||||++.+
T Consensus 66 --------~~~~~~~~~~~i~~~i~~-~~~~~~~dvViIDEaQ~l 101 (223)
T 2b8t_A 66 --------LPSVEVESAPEILNYIMS-NSFNDETKVIGIDEVQFF 101 (223)
T ss_dssp --------SCCEEESSTHHHHHHHHS-TTSCTTCCEEEECSGGGS
T ss_pred --------ccccccCCHHHHHHHHHH-HhhCCCCCEEEEecCccC
Confidence 012345666777776654 223356899999999964
No 104
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.49 E-value=0.0003 Score=68.09 Aligned_cols=105 Identities=20% Similarity=0.204 Sum_probs=60.7
Q ss_pred CEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHH
Q 013858 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQR 239 (435)
Q Consensus 160 ~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 239 (435)
-.++.|+.|+|||+.. .-. .. ....+|++||++++..+.+.+.+.+..
T Consensus 163 v~~I~G~aGsGKTt~I-~~~----~~--------~~~~lVlTpT~~aa~~l~~kl~~~~~~------------------- 210 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEI-LSR----VN--------FEEDLILVPGRQAAEMIRRRANASGII------------------- 210 (446)
T ss_dssp EEEEEECTTSCHHHHH-HHH----CC--------TTTCEEEESCHHHHHHHHHHHTTTSCC-------------------
T ss_pred EEEEEcCCCCCHHHHH-HHH----hc--------cCCeEEEeCCHHHHHHHHHHhhhcCcc-------------------
Confidence 4789999999999853 111 11 124799999999998887766432110
Q ss_pred HHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEc
Q 013858 240 SELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (435)
Q Consensus 240 ~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~S 307 (435)
.....-+.|.+.++- .........+++||||||-.+ ..+ .+..++...+. .++|++.
T Consensus 211 ----~~~~~~V~T~dsfL~--~~~~~~~~~~d~liiDE~sm~-~~~---~l~~l~~~~~~-~~vilvG 267 (446)
T 3vkw_A 211 ----VATKDNVRTVDSFLM--NYGKGARCQFKRLFIDEGLML-HTG---CVNFLVEMSLC-DIAYVYG 267 (446)
T ss_dssp ----CCCTTTEEEHHHHHH--TTTSSCCCCCSEEEEETGGGS-CHH---HHHHHHHHTTC-SEEEEEE
T ss_pred ----ccccceEEEeHHhhc--CCCCCCCCcCCEEEEeCcccC-CHH---HHHHHHHhCCC-CEEEEec
Confidence 012334678766532 121222235899999999843 332 33333444433 4454443
No 105
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.32 E-value=0.00054 Score=58.24 Aligned_cols=31 Identities=26% Similarity=0.249 Sum_probs=22.2
Q ss_pred cHHHHHHHHHHh---------cCCCEEEEccCCCchhHHh
Q 013858 145 TSIQAQAMPVAL---------SGRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 145 ~~~Q~~~i~~~~---------~~~~vii~~~TGsGKT~~~ 175 (435)
.+.|+.++..+. .|+.+++.||+|+|||+.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHH
Confidence 345555554443 4678999999999999843
No 106
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.29 E-value=0.0018 Score=66.04 Aligned_cols=74 Identities=15% Similarity=0.113 Sum_probs=57.5
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcCC
Q 013858 143 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLD 222 (435)
Q Consensus 143 ~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~~ 222 (435)
.+.|+|+..+..+...+.+++.++-|.|||++....++..+... .+..++++.|++..|..+.+.++.+....+
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~------~~~~i~~va~t~~qA~~~~~~i~~~i~~~p 236 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN------KDKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTS------SSCEEEEEESSHHHHHHHHHHHHHHHTTSC
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhC------CCCeEEEEECCHHHHHHHHHHHHHHHHhCh
Confidence 57999999998775566799999999999987654444444332 145799999999999999888888876654
No 107
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=97.28 E-value=0.00084 Score=58.96 Aligned_cols=40 Identities=15% Similarity=0.125 Sum_probs=28.5
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccCh
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTR 204 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r 204 (435)
.|+-.+++|++|+|||+.+ +-.+...... |.+++++.|..
T Consensus 18 ~g~l~v~~G~MgsGKTT~l-L~~~~r~~~~-------g~kvli~kp~~ 57 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTEL-MRRVRRFQIA-------QYKCLVIKYAK 57 (234)
T ss_dssp CCEEEEEECCTTSCHHHHH-HHHHHHHHTT-------TCCEEEEEETT
T ss_pred ceEEEEEECCCCCcHHHHH-HHHHHHHHHC-------CCeEEEEeecC
Confidence 4566899999999999765 4444443332 57799998875
No 108
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.26 E-value=0.00038 Score=60.55 Aligned_cols=39 Identities=23% Similarity=0.270 Sum_probs=27.2
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccCh
Q 013858 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTR 204 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r 204 (435)
|+-.+++|++|+|||+.+ +-.+...... +.+++++.|..
T Consensus 28 G~l~vitG~MgsGKTT~l-L~~a~r~~~~-------g~kVli~k~~~ 66 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEEL-IRRVRRTQFA-------KQHAIVFKPCI 66 (214)
T ss_dssp CEEEEEECSTTSCHHHHH-HHHHHHHHHT-------TCCEEEEECC-
T ss_pred CEEEEEECCCCCcHHHHH-HHHHHHHHHC-------CCEEEEEEecc
Confidence 445779999999999875 4444444432 56799999875
No 109
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.25 E-value=0.00016 Score=61.86 Aligned_cols=39 Identities=21% Similarity=0.227 Sum_probs=27.4
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccC
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPT 203 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~ 203 (435)
.|+-.+++|++|+|||+.+ +-++...... +.+++++.|.
T Consensus 2 ~g~i~vi~G~~gsGKTT~l-l~~~~~~~~~-------g~~v~~~~~~ 40 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTEL-LSFVEIYKLG-------KKKVAVFKPK 40 (184)
T ss_dssp CCCEEEEEESTTSSHHHHH-HHHHHHHHHT-------TCEEEEEEEC
T ss_pred ccEEEEEECCCCCCHHHHH-HHHHHHHHHC-------CCeEEEEeec
Confidence 3566899999999999864 3444443332 4578888887
No 110
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.23 E-value=0.0017 Score=63.04 Aligned_cols=132 Identities=16% Similarity=0.165 Sum_probs=72.4
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEc--cChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHH
Q 013858 159 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA--PTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIA 236 (435)
Q Consensus 159 ~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~--P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~ 236 (435)
..++++|++|+|||+.. ..+...+... +.+++++. +.|..+.. .+..++... ++.+.....+.
T Consensus 98 ~vI~lvG~~GsGKTTt~--~kLA~~l~~~------G~kVllv~~D~~r~~a~e---qL~~~~~~~-gv~~~~~~~~~--- 162 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTA--GKLAYFYKKR------GYKVGLVAADVYRPAAYD---QLLQLGNQI-GVQVYGEPNNQ--- 162 (433)
T ss_dssp EEEEECCCTTSCHHHHH--HHHHHHHHHT------TCCEEEEEECCSCHHHHH---HHHHHHHTT-TCCEECCTTCS---
T ss_pred eEEEEECCCCCCHHHHH--HHHHHHHHHc------CCeEEEEecCccchhHHH---HHHHHHHhc-CCceeeccccC---
Confidence 35889999999999854 2333323321 45566655 45544333 333343332 23222111111
Q ss_pred HHHHHHhCCCcEEEECcHHHH-HHHHcCCCCCCCceEEEEecCCccc---CCCCHHHHHHHHHhCCCCCeEEEEcccccH
Q 013858 237 EQRSELRGGVSIVVATPGRFL-DHLQQGNTSLSRVSFVILDEADRML---DMGFEPQIREVMQNLPDKHQTLLFSATMPV 312 (435)
Q Consensus 237 ~~~~~~~~~~~I~v~T~~~l~-~~l~~~~~~l~~~~~iIiDEah~~~---~~~~~~~i~~i~~~~~~~~q~i~~SATl~~ 312 (435)
.|..+. +.+.. .....+++||||++-++. +..+...+..+.....++.-++.++|+...
T Consensus 163 ---------------dp~~i~~~al~~--a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq 225 (433)
T 3kl4_A 163 ---------------NPIEIAKKGVDI--FVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQ 225 (433)
T ss_dssp ---------------CHHHHHHHHHHH--TTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGG
T ss_pred ---------------CHHHHHHHHHHH--HHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccch
Confidence 122222 22222 223578999999998653 333556677776666666667888888766
Q ss_pred HHHHHHHHHc
Q 013858 313 EIEALAQEYL 322 (435)
Q Consensus 313 ~~~~~~~~~~ 322 (435)
.....++.|.
T Consensus 226 ~a~~~a~~f~ 235 (433)
T 3kl4_A 226 KAYDLASRFH 235 (433)
T ss_dssp GGHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 6655666554
No 111
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.12 E-value=0.00025 Score=61.00 Aligned_cols=39 Identities=21% Similarity=0.167 Sum_probs=28.1
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccC
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPT 203 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~ 203 (435)
.|+-.+++|++|+|||+.. +-++...... +.+++++.|.
T Consensus 7 ~g~i~v~~G~mgsGKTT~l-l~~a~r~~~~-------g~kV~v~k~~ 45 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEEL-IRRIRRAKIA-------KQKIQVFKPE 45 (191)
T ss_dssp CCEEEEEECSTTSSHHHHH-HHHHHHHHHT-------TCCEEEEEEC
T ss_pred CCEEEEEECCCCCcHHHHH-HHHHHHHHHC-------CCEEEEEEec
Confidence 3456899999999999865 4444444432 5679999887
No 112
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.05 E-value=0.00031 Score=57.84 Aligned_cols=18 Identities=28% Similarity=0.425 Sum_probs=16.2
Q ss_pred cCCCEEEEccCCCchhHH
Q 013858 157 SGRDLLGCAETGSGKTAA 174 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~ 174 (435)
.|..+++.||+|+|||+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL 52 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHL 52 (149)
T ss_dssp CCSEEEEESSSTTTTCHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 678899999999999984
No 113
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.03 E-value=0.0072 Score=56.11 Aligned_cols=26 Identities=8% Similarity=0.005 Sum_probs=18.7
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHH
Q 013858 158 GRDLLGCAETGSGKTAAFTIPMIQHCV 184 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~~~~~l~~~~ 184 (435)
+.++++.||+|+|||++. -.++..+.
T Consensus 45 ~~~lli~GpPGTGKT~~v-~~v~~~L~ 70 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLV-NDVMDELI 70 (318)
T ss_dssp CCEEEEECCCSHHHHHHH-HHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHHH
Confidence 457999999999999864 33444443
No 114
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.91 E-value=0.00098 Score=57.84 Aligned_cols=40 Identities=20% Similarity=0.159 Sum_probs=27.9
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccCh
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTR 204 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r 204 (435)
.|.-.+++|++|+|||+.. +..+...... +.+++++.|..
T Consensus 27 ~G~I~vitG~M~sGKTT~L-lr~~~r~~~~-------g~kvli~kp~~ 66 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEEL-IRRLRRGIYA-------KQKVVVFKPAI 66 (219)
T ss_dssp CCEEEEEEECTTSCHHHHH-HHHHHHHHHT-------TCCEEEEEEC-
T ss_pred CceEEEEECCCCCCHHHHH-HHHHHHHHHc-------CCceEEEEecc
Confidence 4566899999999999764 4444444332 56789998864
No 115
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=96.71 E-value=0.0041 Score=63.29 Aligned_cols=112 Identities=21% Similarity=0.326 Sum_probs=74.4
Q ss_pred CCcHHHHHHHHHHhc--CCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhc
Q 013858 143 RPTSIQAQAMPVALS--GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRS 220 (435)
Q Consensus 143 ~p~~~Q~~~i~~~~~--~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~ 220 (435)
.++.-|.+++..++. ....++.|+-|.|||++..+.+ .. +. ..++|++|+.+.+..+. ++...
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~-a~-~~---------~~~~vtAP~~~a~~~l~----~~~~~ 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLI-SR-IA---------GRAIVTAPAKASTDVLA----QFAGE 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHH-HH-SS---------SCEEEECSSCCSCHHHH----HHHGG
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHH-HH-HH---------hCcEEECCCHHHHHHHH----HHhhC
Confidence 578899999998886 3348999999999997543322 22 21 23799999998766432 22211
Q ss_pred CCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEEEEecCCcccCCCCHHHHHHHHHhCCCC
Q 013858 221 LDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFVILDEADRMLDMGFEPQIREVMQNLPDK 300 (435)
Q Consensus 221 ~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~ 300 (435)
.|-|..|+.++. .+.+.+++|||||=.+ -.+.+..++...+
T Consensus 240 --------------------------~i~~~~Pd~~~~-------~~~~~dlliVDEAAaI----p~pll~~ll~~~~-- 280 (671)
T 2zpa_A 240 --------------------------KFRFIAPDALLA-------SDEQADWLVVDEAAAI----PAPLLHQLVSRFP-- 280 (671)
T ss_dssp --------------------------GCCBCCHHHHHH-------SCCCCSEEEEETGGGS----CHHHHHHHHTTSS--
T ss_pred --------------------------CeEEeCchhhhh-------CcccCCEEEEEchhcC----CHHHHHHHHhhCC--
Confidence 144556765431 2345899999999865 3567777776443
Q ss_pred CeEEEEcccc
Q 013858 301 HQTLLFSATM 310 (435)
Q Consensus 301 ~q~i~~SATl 310 (435)
.++||.|.
T Consensus 281 --~v~~~tTv 288 (671)
T 2zpa_A 281 --RTLLTTTV 288 (671)
T ss_dssp --EEEEEEEB
T ss_pred --eEEEEecC
Confidence 57788886
No 116
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.64 E-value=0.0098 Score=57.71 Aligned_cols=131 Identities=15% Similarity=0.130 Sum_probs=66.2
Q ss_pred CEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEc--cChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHH
Q 013858 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA--PTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAE 237 (435)
Q Consensus 160 ~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~--P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 237 (435)
.++++|++|+|||+.. .-+..++... |.+++++. |.|..+... ++.++... ++.+.....+.
T Consensus 102 vIlivG~~G~GKTTt~-~kLA~~l~~~-------G~kVllv~~D~~R~aa~eq---L~~~~~~~-gvpv~~~~~~~---- 165 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTV-AKLARYFQKR-------GYKVGVVCSDTWRPGAYHQ---LRQLLDRY-HIEVFGNPQEK---- 165 (443)
T ss_dssp EEEEECCTTSSHHHHH-HHHHHHHHTT-------TCCEEEEECCCSSTHHHHH---HHHHHGGG-TCEEECCTTCC----
T ss_pred EEEEECcCCCCHHHHH-HHHHHHHHHC-------CCeEEEEeCCCcchhHHHH---HHHHHHhc-CCcEEecCCCC----
Confidence 5899999999999864 2233333321 45566665 666654433 44444332 33332211111
Q ss_pred HHHHHhCCCcEEEECcHHHH-HHHHcCCCCCCCceEEEEecCCcccCC-CCHHHHHHHHHhCCCCCeEEEEcccccHHHH
Q 013858 238 QRSELRGGVSIVVATPGRFL-DHLQQGNTSLSRVSFVILDEADRMLDM-GFEPQIREVMQNLPDKHQTLLFSATMPVEIE 315 (435)
Q Consensus 238 ~~~~~~~~~~I~v~T~~~l~-~~l~~~~~~l~~~~~iIiDEah~~~~~-~~~~~i~~i~~~~~~~~q~i~~SATl~~~~~ 315 (435)
.|..+. +.+.. .....+++||||.+=++... .....+..+.....++.-++.+.|+......
T Consensus 166 --------------dp~~i~~~al~~--a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~ 229 (443)
T 3dm5_A 166 --------------DAIKLAKEGVDY--FKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAY 229 (443)
T ss_dssp --------------CHHHHHHHHHHH--HHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHH
T ss_pred --------------CHHHHHHHHHHH--HHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHH
Confidence 121111 11111 01124678888888654322 1333445555555555556777777665555
Q ss_pred HHHHHHc
Q 013858 316 ALAQEYL 322 (435)
Q Consensus 316 ~~~~~~~ 322 (435)
..++.|.
T Consensus 230 ~~a~~f~ 236 (443)
T 3dm5_A 230 NQALAFK 236 (443)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555554
No 117
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.61 E-value=0.006 Score=56.98 Aligned_cols=18 Identities=22% Similarity=0.307 Sum_probs=15.4
Q ss_pred CCCEEEEccCCCchhHHh
Q 013858 158 GRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~ 175 (435)
+..+++.||+|+|||+.+
T Consensus 37 ~~~lll~G~~GtGKT~la 54 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLL 54 (324)
T ss_dssp CSSEEEECSSSSSHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 357999999999999853
No 118
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.56 E-value=0.0044 Score=52.97 Aligned_cols=38 Identities=16% Similarity=0.109 Sum_probs=26.6
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccC
Q 013858 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPT 203 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~ 203 (435)
|+=.++.|++|+|||+-. +-.+...... +.+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~L-l~~i~n~~~~-------~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTEL-MRRVRRFQIA-------QYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHH-HHHHHHHHHT-------TCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHH-HHHHHHHHHc-------CCeEEEEccc
Confidence 556899999999999653 4444443332 4678999887
No 119
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.54 E-value=0.0095 Score=48.44 Aligned_cols=20 Identities=10% Similarity=0.144 Sum_probs=17.0
Q ss_pred hcCCCEEEEccCCCchhHHh
Q 013858 156 LSGRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 156 ~~~~~vii~~~TGsGKT~~~ 175 (435)
..+.++++.||+|+|||+.+
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 36678999999999999854
No 120
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.50 E-value=0.014 Score=54.83 Aligned_cols=32 Identities=25% Similarity=0.173 Sum_probs=23.9
Q ss_pred CcHHHHHHHHHHh----cCC---CEEEEccCCCchhHHh
Q 013858 144 PTSIQAQAMPVAL----SGR---DLLGCAETGSGKTAAF 175 (435)
Q Consensus 144 p~~~Q~~~i~~~~----~~~---~vii~~~TGsGKT~~~ 175 (435)
.+|||...+..+. +|+ .+++.||.|+|||..+
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a 41 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALI 41 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHH
Confidence 3677877776554 444 3899999999999854
No 121
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.46 E-value=0.032 Score=48.21 Aligned_cols=41 Identities=20% Similarity=0.283 Sum_probs=26.5
Q ss_pred CCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEccc
Q 013858 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSAT 309 (435)
Q Consensus 268 ~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT 309 (435)
.+..+|||||+|.+... ....+..++...+....+|+.+..
T Consensus 101 ~~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~~~ 141 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-AQAALRRTMEMYSKSCRFILSCNY 141 (226)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEESC
T ss_pred cCceEEEEeChhhcCHH-HHHHHHHHHHhcCCCCeEEEEeCC
Confidence 45789999999976432 344566666666666665555443
No 122
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.45 E-value=0.012 Score=55.97 Aligned_cols=19 Identities=37% Similarity=0.338 Sum_probs=15.8
Q ss_pred cCCCEEEEccCCCchhHHh
Q 013858 157 SGRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~ 175 (435)
.+..+++.||+|+|||+.+
T Consensus 43 ~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCCEEECBCTTSSHHHHH
T ss_pred CCCcEEEECCCCCCHHHHH
Confidence 3457999999999999853
No 123
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=96.38 E-value=0.0088 Score=62.44 Aligned_cols=71 Identities=24% Similarity=0.201 Sum_probs=53.1
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHh
Q 013858 142 TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (435)
Q Consensus 142 ~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~ 218 (435)
..+++-|++++.. .+..++|.|..|||||.+. +--+.+++.... .....+|+++.|+.+|.++.+++..+.
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL-~~ri~~ll~~~~---~~p~~IL~vTFTnkAA~Em~~Rl~~~l 80 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVL-THRIAYLMAEKH---VAPWNILAITFTNKAAREMRERVQSLL 80 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHH-HHHHHHHHHTTC---CCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHH-HHHHHHHHHhcC---CCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 4578999999876 3567999999999999875 333444444211 123579999999999999999997764
No 124
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=96.36 E-value=0.0057 Score=63.35 Aligned_cols=70 Identities=24% Similarity=0.178 Sum_probs=51.8
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHh
Q 013858 143 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (435)
Q Consensus 143 ~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~ 218 (435)
.+++-|++++.. .+..++|.|..|||||.+.. --+.++..... .....+|+++.|+.+|.++.+++..+.
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~-~ri~~ll~~~~---~~~~~IL~lTfT~~Aa~em~~Rl~~~l 71 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVIT-NKIAHLIRGCG---YQARHIAAVTFTNKAAREMKERVGQTL 71 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHH-HHHHHHHHHHC---CCGGGEEEEESSHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHH-HHHHHHHHhcC---CCHHHeEEEeccHHHHHHHHHHHHHHc
Confidence 368899999985 36679999999999998753 33334333211 123579999999999999999997764
No 125
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.34 E-value=0.022 Score=51.55 Aligned_cols=17 Identities=35% Similarity=0.178 Sum_probs=14.8
Q ss_pred CCEEEEccCCCchhHHh
Q 013858 159 RDLLGCAETGSGKTAAF 175 (435)
Q Consensus 159 ~~vii~~~TGsGKT~~~ 175 (435)
+.+++.||+|+|||+.+
T Consensus 65 ~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALA 81 (272)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 46999999999999854
No 126
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.23 E-value=0.008 Score=56.09 Aligned_cols=42 Identities=17% Similarity=0.274 Sum_probs=26.6
Q ss_pred CCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEccc
Q 013858 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSAT 309 (435)
Q Consensus 268 ~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT 309 (435)
.+..+|||||+|.+........+..++...+...++|+.+-.
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~ 145 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANN 145 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESS
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCC
Confidence 367899999999875222344555556555556666664443
No 127
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.20 E-value=0.015 Score=56.84 Aligned_cols=43 Identities=16% Similarity=0.423 Sum_probs=24.8
Q ss_pred CceEEEEecCCcccCC-CCHHHHHHHHHhC-CCCCeEEEEccccc
Q 013858 269 RVSFVILDEADRMLDM-GFEPQIREVMQNL-PDKHQTLLFSATMP 311 (435)
Q Consensus 269 ~~~~iIiDEah~~~~~-~~~~~i~~i~~~~-~~~~q~i~~SATl~ 311 (435)
+.++|+|||+|.+... .....+..++..+ ....++|+.|...+
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~ 238 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREP 238 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCG
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCH
Confidence 4679999999987653 2233444444433 33456665554433
No 128
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.17 E-value=0.028 Score=48.26 Aligned_cols=17 Identities=29% Similarity=0.317 Sum_probs=15.1
Q ss_pred CCEEEEccCCCchhHHh
Q 013858 159 RDLLGCAETGSGKTAAF 175 (435)
Q Consensus 159 ~~vii~~~TGsGKT~~~ 175 (435)
+.+++.||+|+|||+.+
T Consensus 55 ~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 67999999999999853
No 129
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.15 E-value=0.017 Score=48.49 Aligned_cols=18 Identities=28% Similarity=0.351 Sum_probs=15.3
Q ss_pred CCCEEEEccCCCchhHHh
Q 013858 158 GRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~ 175 (435)
..++++.||+|+|||+.+
T Consensus 43 ~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp SCEEEEESCGGGCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 457999999999999853
No 130
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.14 E-value=0.0094 Score=56.96 Aligned_cols=16 Identities=25% Similarity=0.322 Sum_probs=14.3
Q ss_pred CEEEEccCCCchhHHh
Q 013858 160 DLLGCAETGSGKTAAF 175 (435)
Q Consensus 160 ~vii~~~TGsGKT~~~ 175 (435)
.+++.||+|+|||+.+
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 7999999999999843
No 131
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.13 E-value=0.018 Score=53.40 Aligned_cols=18 Identities=22% Similarity=0.338 Sum_probs=15.8
Q ss_pred CCCEEEEccCCCchhHHh
Q 013858 158 GRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~ 175 (435)
++++++.||+|+|||..+
T Consensus 152 ~~~lll~G~~GtGKT~La 169 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLL 169 (308)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 578999999999999854
No 132
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.05 E-value=0.017 Score=52.61 Aligned_cols=53 Identities=15% Similarity=0.122 Sum_probs=29.6
Q ss_pred CCCcccCCCCHHHHHHHHHCCCCCCcHH-HHHHHHHH--hcCCCEEEEccCCCchhHHh
Q 013858 120 IESFTDMCLHPSIMKDIEFHEYTRPTSI-QAQAMPVA--LSGRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 120 ~~~~~~~~l~~~l~~~l~~~~~~~p~~~-Q~~~i~~~--~~~~~vii~~~TGsGKT~~~ 175 (435)
...|+++.-.+..++.+...-. .+. ....+..+ ..++.+++.||+|+|||+.+
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVE---LPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTH---HHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 3457787656666555543211 000 01111111 24567999999999999843
No 133
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.03 E-value=0.017 Score=48.77 Aligned_cols=18 Identities=33% Similarity=0.357 Sum_probs=15.2
Q ss_pred CCCEEEEccCCCchhHHh
Q 013858 158 GRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~ 175 (435)
...+++.|++|+|||+.+
T Consensus 43 ~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp SCEEEEECCTTSCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 356999999999999853
No 134
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.02 E-value=0.016 Score=53.45 Aligned_cols=17 Identities=24% Similarity=0.266 Sum_probs=14.9
Q ss_pred CCEEEEccCCCchhHHh
Q 013858 159 RDLLGCAETGSGKTAAF 175 (435)
Q Consensus 159 ~~vii~~~TGsGKT~~~ 175 (435)
.++++.||+|+|||+.+
T Consensus 68 ~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46999999999999854
No 135
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=96.02 E-value=0.01 Score=65.77 Aligned_cols=70 Identities=30% Similarity=0.286 Sum_probs=51.9
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHH
Q 013858 143 RPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 216 (435)
Q Consensus 143 ~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~ 216 (435)
.+++-|.++|..- +++++|.|..|||||.+.+--++..+.. +. ......+++++++|+.+|..+.+++..
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~-~~-~~~~~~~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITA-EE-NPIDVDRLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSC-SS-SCCCGGGEEEECSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhc-CC-CCCCccceEEEeccHHHHHHHHHHHHH
Confidence 5689999999864 7899999999999998754334443332 11 011235799999999999999988865
No 136
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.00 E-value=0.017 Score=49.29 Aligned_cols=52 Identities=17% Similarity=0.275 Sum_probs=36.1
Q ss_pred CCCceEEEEecCCcccCCCC--HHHHHHHHHhCCCCCeEEEEcccccHHHHHHH
Q 013858 267 LSRVSFVILDEADRMLDMGF--EPQIREVMQNLPDKHQTLLFSATMPVEIEALA 318 (435)
Q Consensus 267 l~~~~~iIiDEah~~~~~~~--~~~i~~i~~~~~~~~q~i~~SATl~~~~~~~~ 318 (435)
-.+|++||+||+-..+..++ ...+..++...+...-+|+.+--.|+.+-+.+
T Consensus 118 ~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~A 171 (196)
T 1g5t_A 118 DPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLA 171 (196)
T ss_dssp CTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHC
T ss_pred cCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHhC
Confidence 36799999999975444442 45677777777777766666666677666543
No 137
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.96 E-value=0.006 Score=53.88 Aligned_cols=19 Identities=16% Similarity=0.135 Sum_probs=16.1
Q ss_pred cCCCEEEEccCCCchhHHh
Q 013858 157 SGRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~ 175 (435)
.++.+++.||+|+|||+.+
T Consensus 51 ~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4567999999999999843
No 138
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.76 E-value=0.034 Score=52.23 Aligned_cols=41 Identities=24% Similarity=0.316 Sum_probs=26.8
Q ss_pred CCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEccc
Q 013858 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSAT 309 (435)
Q Consensus 268 ~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT 309 (435)
....+|||||+|++... ....+..++...+....+|+.+..
T Consensus 132 ~~~~vliiDE~~~l~~~-~~~~Ll~~le~~~~~~~~il~~~~ 172 (353)
T 1sxj_D 132 PPYKIIILDEADSMTAD-AQSALRRTMETYSGVTRFCLICNY 172 (353)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEESC
T ss_pred CCceEEEEECCCccCHH-HHHHHHHHHHhcCCCceEEEEeCc
Confidence 45689999999987432 334566666666666666665543
No 139
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.74 E-value=0.1 Score=45.53 Aligned_cols=40 Identities=15% Similarity=0.244 Sum_probs=23.4
Q ss_pred CCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEcc
Q 013858 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSA 308 (435)
Q Consensus 268 ~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SA 308 (435)
.+-.+|||||+|.+.. .....+...+...+....+|+.|.
T Consensus 125 ~~~~vlviDe~~~l~~-~~~~~l~~~l~~~~~~~~~i~~t~ 164 (250)
T 1njg_A 125 GRFKVYLIDEVHMLSR-HSFNALLKTLEEPPEHVKFLLATT 164 (250)
T ss_dssp SSSEEEEEETGGGSCH-HHHHHHHHHHHSCCTTEEEEEEES
T ss_pred CCceEEEEECcccccH-HHHHHHHHHHhcCCCceEEEEEeC
Confidence 3467999999998632 223344555554445555555443
No 140
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.64 E-value=0.03 Score=52.77 Aligned_cols=43 Identities=21% Similarity=0.387 Sum_probs=29.3
Q ss_pred CCCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEcccc
Q 013858 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSATM 310 (435)
Q Consensus 267 l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SATl 310 (435)
..+.+++||||+|. ++......+.+++...++...+|+.|-.+
T Consensus 132 ~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 132 AHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp --CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred CCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 34678999999998 45445567777777776666666665544
No 141
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.53 E-value=0.041 Score=51.45 Aligned_cols=17 Identities=29% Similarity=0.321 Sum_probs=14.9
Q ss_pred CCEEEEccCCCchhHHh
Q 013858 159 RDLLGCAETGSGKTAAF 175 (435)
Q Consensus 159 ~~vii~~~TGsGKT~~~ 175 (435)
.++++.||+|+|||+.+
T Consensus 56 ~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 57999999999999854
No 142
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.41 E-value=0.018 Score=55.03 Aligned_cols=54 Identities=15% Similarity=0.188 Sum_probs=30.6
Q ss_pred CCCCcccCCCCHHHHHHHHHCC---CCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHh
Q 013858 119 PIESFTDMCLHPSIMKDIEFHE---YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 119 ~~~~~~~~~l~~~l~~~l~~~~---~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~ 175 (435)
|--+|++++=-+...+.|+..= +..|--++...+ --.+.+++.||+|+|||+.+
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi---~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGI---AQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTC---CCCCCEEEESCSSSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCceEEeCCCCCCHHHHH
Confidence 4457999865555555554321 111222221111 12367999999999999843
No 143
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.40 E-value=0.082 Score=48.52 Aligned_cols=54 Identities=15% Similarity=0.212 Sum_probs=27.4
Q ss_pred CCceEEEEecCCcccC-CCCHHHHHHHHHhCCCCCeEEEEcccccHHHHHHHHHH
Q 013858 268 SRVSFVILDEADRMLD-MGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEY 321 (435)
Q Consensus 268 ~~~~~iIiDEah~~~~-~~~~~~i~~i~~~~~~~~q~i~~SATl~~~~~~~~~~~ 321 (435)
.++++||||++-++.. ......+..+...+.+..-++.+.|+-.......++.+
T Consensus 179 ~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~ 233 (295)
T 1ls1_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAF 233 (295)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCcHHHHHHHHHH
Confidence 4689999999954422 11223444444444443334456665443333344444
No 144
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.38 E-value=0.045 Score=51.94 Aligned_cols=18 Identities=33% Similarity=0.444 Sum_probs=15.4
Q ss_pred CCCEEEEccCCCchhHHh
Q 013858 158 GRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~ 175 (435)
+..+++.||.|+|||+.+
T Consensus 45 ~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCEEEEECTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467999999999999853
No 145
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.25 E-value=0.078 Score=48.93 Aligned_cols=40 Identities=18% Similarity=0.314 Sum_probs=26.0
Q ss_pred CCCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEc
Q 013858 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (435)
Q Consensus 267 l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~S 307 (435)
..+++++||||||++... -...+.+.+..-++...+|+.+
T Consensus 80 ~~~~kvviIdead~lt~~-a~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQQ-AANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp SSSSEEEEETTGGGBCHH-HHHHTHHHHHSCCTTEEEEEEE
T ss_pred cCCceEEEeccHHHhCHH-HHHHHHHHHhCCCCCeEEEEEE
Confidence 356899999999987432 2345666666655566555544
No 146
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.23 E-value=0.12 Score=46.11 Aligned_cols=18 Identities=28% Similarity=0.233 Sum_probs=15.3
Q ss_pred CCCEEEEccCCCchhHHh
Q 013858 158 GRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~ 175 (435)
.+.+++.||+|+|||+.+
T Consensus 39 ~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 456999999999999854
No 147
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.19 E-value=0.04 Score=52.46 Aligned_cols=17 Identities=35% Similarity=0.143 Sum_probs=14.8
Q ss_pred CCEEEEccCCCchhHHh
Q 013858 159 RDLLGCAETGSGKTAAF 175 (435)
Q Consensus 159 ~~vii~~~TGsGKT~~~ 175 (435)
+.+++.||+|+|||+.+
T Consensus 46 ~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 46999999999999854
No 148
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.18 E-value=0.076 Score=46.37 Aligned_cols=19 Identities=32% Similarity=0.256 Sum_probs=15.9
Q ss_pred cCCCEEEEccCCCchhHHh
Q 013858 157 SGRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~ 175 (435)
.|..+++.|++|+|||+.+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~ 40 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFS 40 (235)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHH
Confidence 4667999999999999743
No 149
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.17 E-value=0.11 Score=48.24 Aligned_cols=50 Identities=16% Similarity=0.159 Sum_probs=29.0
Q ss_pred CCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHh-----cCCCEEEEccCCCchhHHh
Q 013858 120 IESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVAL-----SGRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 120 ~~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~-----~~~~vii~~~TGsGKT~~~ 175 (435)
..+|++++=.+..++.|...-. .|. ..+.+. ..+.+++.||+|+|||+.+
T Consensus 8 ~~~~~di~G~~~~k~~l~~~v~---~p~---~~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 8 NVKWSDVAGLEGAKEALKEAVI---LPI---KFPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHH---HHH---HCGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHH---HHH---hCHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 3468888766666666532200 000 001221 1256999999999999843
No 150
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.15 E-value=0.068 Score=49.74 Aligned_cols=50 Identities=12% Similarity=0.101 Sum_probs=29.2
Q ss_pred CCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHh-----cCCCEEEEccCCCchhHHh
Q 013858 120 IESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVAL-----SGRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 120 ~~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~-----~~~~vii~~~TGsGKT~~~ 175 (435)
...|+++.-....++.|...-. .| ...+.+. ..+.+++.||+|+|||+.+
T Consensus 14 ~~~~~di~G~~~~~~~l~~~i~---~~---~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 14 NVKWEDVAGLEGAKEALKEAVI---LP---VKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTH---HH---HHCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCCHHHhcChHHHHHHHHHHHH---HH---HhCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 3458888666666666543211 00 0111111 1346999999999999854
No 151
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=95.10 E-value=0.061 Score=51.83 Aligned_cols=60 Identities=18% Similarity=0.210 Sum_probs=55.1
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHh---CCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcC
Q 013858 373 PFPLTIVFVERKTRCDEVSEALVA---EGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSY 432 (435)
Q Consensus 373 ~~~~~lVF~~~~~~~~~l~~~L~~---~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~ 432 (435)
.++++||.++++.-+.++++.++. .++.+..+||+.+..+|...++.+..|..+|+|+|+
T Consensus 63 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp 125 (414)
T 3oiy_A 63 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFST 125 (414)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEH
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECH
Confidence 345799999999999999999998 588999999999999999999999999999999995
No 152
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.06 E-value=0.025 Score=54.91 Aligned_cols=54 Identities=15% Similarity=0.178 Sum_probs=31.6
Q ss_pred CCCCcccCCCCHHHHHHHHHCC---CCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHh
Q 013858 119 PIESFTDMCLHPSIMKDIEFHE---YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 119 ~~~~~~~~~l~~~l~~~l~~~~---~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~ 175 (435)
|--+|++++=-+...+.|+..= +..|--++... +--.+.+++.||.|+|||+.+
T Consensus 204 P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~G---i~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 204 PDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLG---IDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp CSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCSEEEECSCTTSSHHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCC---CCCCCceEeeCCCCCcHHHHH
Confidence 4457999876666666664431 11111111111 112467999999999999843
No 153
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.05 E-value=0.14 Score=48.42 Aligned_cols=40 Identities=15% Similarity=0.222 Sum_probs=24.6
Q ss_pred CCCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEc
Q 013858 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (435)
Q Consensus 267 l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~S 307 (435)
..+..+|||||+|.+... ....+.+.+...+....+|+.+
T Consensus 117 ~~~~~vliiDe~~~l~~~-~~~~Ll~~le~~~~~~~~Il~~ 156 (373)
T 1jr3_A 117 RGRFKVYLIDEVHMLSRH-SFNALLKTLEEPPEHVKFLLAT 156 (373)
T ss_dssp SSSSEEEEEECGGGSCHH-HHHHHHHHHHSCCSSEEEEEEE
T ss_pred cCCeEEEEEECcchhcHH-HHHHHHHHHhcCCCceEEEEEe
Confidence 446789999999987322 2344555555555555444444
No 154
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.03 E-value=0.14 Score=47.68 Aligned_cols=54 Identities=13% Similarity=0.171 Sum_probs=36.2
Q ss_pred CceEEEEecCCccc-CCCCHHHHHHHHHhCCCCCeEEEEcccccHHHHHHHHHHc
Q 013858 269 RVSFVILDEADRML-DMGFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEYL 322 (435)
Q Consensus 269 ~~~~iIiDEah~~~-~~~~~~~i~~i~~~~~~~~q~i~~SATl~~~~~~~~~~~~ 322 (435)
.++++++|.+-+.- +......+..+...+.++..++++.++....+...++.|.
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~~ 265 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQFN 265 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHH
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHH
Confidence 45688899987643 2334556666655566667788888887777666666664
No 155
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.00 E-value=0.069 Score=53.28 Aligned_cols=41 Identities=17% Similarity=0.177 Sum_probs=26.1
Q ss_pred CCceEEEEecCCcccCCC--CHHHHHHHHHhCCCCCeEEEEcccc
Q 013858 268 SRVSFVILDEADRMLDMG--FEPQIREVMQNLPDKHQTLLFSATM 310 (435)
Q Consensus 268 ~~~~~iIiDEah~~~~~~--~~~~i~~i~~~~~~~~q~i~~SATl 310 (435)
.+..+|||||+|.+.... ....+..++... ...+|+.+++.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~~ 189 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNER 189 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESCT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcCC
Confidence 456799999999875432 334555555543 34477777664
No 156
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=94.94 E-value=0.065 Score=49.68 Aligned_cols=18 Identities=33% Similarity=0.246 Sum_probs=15.4
Q ss_pred CCCEEEEccCCCchhHHh
Q 013858 158 GRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~ 175 (435)
...+++.||+|+|||+.+
T Consensus 38 ~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCCEEECCTTCCCHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 367999999999999853
No 157
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.88 E-value=0.11 Score=47.90 Aligned_cols=40 Identities=20% Similarity=0.334 Sum_probs=26.1
Q ss_pred CCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEcc
Q 013858 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSA 308 (435)
Q Consensus 268 ~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SA 308 (435)
.+..+|||||+|++... ....+..++...+....+|+.+.
T Consensus 109 ~~~~vliiDe~~~l~~~-~~~~L~~~le~~~~~~~~i~~~~ 148 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQD-AQQALRRTMEMFSSNVRFILSCN 148 (327)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEES
T ss_pred CCCeEEEEeCCCcCCHH-HHHHHHHHHHhcCCCCeEEEEeC
Confidence 46789999999987422 34456666666666666555443
No 158
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.85 E-value=0.45 Score=43.74 Aligned_cols=17 Identities=24% Similarity=0.327 Sum_probs=14.2
Q ss_pred CCEEEEccCCCchhHHh
Q 013858 159 RDLLGCAETGSGKTAAF 175 (435)
Q Consensus 159 ~~vii~~~TGsGKT~~~ 175 (435)
+.+.++|++|+|||+..
T Consensus 105 ~vi~ivG~~GsGKTTl~ 121 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSC 121 (306)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEEcCCCChHHHHH
Confidence 35889999999999853
No 159
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.78 E-value=0.053 Score=52.97 Aligned_cols=17 Identities=24% Similarity=0.372 Sum_probs=14.7
Q ss_pred CCEEEEccCCCchhHHh
Q 013858 159 RDLLGCAETGSGKTAAF 175 (435)
Q Consensus 159 ~~vii~~~TGsGKT~~~ 175 (435)
.+++++||+|+|||+.+
T Consensus 51 ~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCcHHHHH
Confidence 36999999999999854
No 160
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.65 E-value=0.2 Score=45.96 Aligned_cols=19 Identities=26% Similarity=0.455 Sum_probs=15.7
Q ss_pred cCCCEEEEccCCCchhHHh
Q 013858 157 SGRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~ 175 (435)
.++.++++|++|+|||+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~ 122 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTL 122 (296)
T ss_dssp CSSEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3567899999999999854
No 161
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.60 E-value=0.17 Score=48.40 Aligned_cols=18 Identities=39% Similarity=0.442 Sum_probs=15.6
Q ss_pred CCCEEEEccCCCchhHHh
Q 013858 158 GRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~ 175 (435)
.+++++.||+|+|||+.+
T Consensus 148 ~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CSEEEEESSTTSCHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 467999999999999854
No 162
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.50 E-value=0.11 Score=49.19 Aligned_cols=17 Identities=24% Similarity=0.307 Sum_probs=14.9
Q ss_pred CCEEEEccCCCchhHHh
Q 013858 159 RDLLGCAETGSGKTAAF 175 (435)
Q Consensus 159 ~~vii~~~TGsGKT~~~ 175 (435)
+.+++.||+|+|||+.+
T Consensus 85 ~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCEEEECSTTSCHHHHH
T ss_pred ceEEEECCCCCcHHHHH
Confidence 56999999999999854
No 163
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.47 E-value=0.15 Score=47.06 Aligned_cols=40 Identities=25% Similarity=0.314 Sum_probs=25.3
Q ss_pred CceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEccc
Q 013858 269 RVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSAT 309 (435)
Q Consensus 269 ~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SAT 309 (435)
+..+|||||+|.+... ....+..++...+....+|+.+..
T Consensus 107 ~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~~~ 146 (323)
T 1sxj_B 107 KHKIVILDEADSMTAG-AQQALRRTMELYSNSTRFAFACNQ 146 (323)
T ss_dssp CCEEEEEESGGGSCHH-HHHTTHHHHHHTTTTEEEEEEESC
T ss_pred CceEEEEECcccCCHH-HHHHHHHHHhccCCCceEEEEeCC
Confidence 4789999999987432 233455556665666666665533
No 164
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.46 E-value=0.12 Score=50.50 Aligned_cols=50 Identities=20% Similarity=0.191 Sum_probs=28.5
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHH
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEV 214 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~ 214 (435)
.|.-+++.|++|+|||+.+ +-+...+.... |..++++..-- -..++..++
T Consensus 202 ~G~liiI~G~pG~GKTtl~-l~ia~~~~~~~------g~~Vl~~s~E~-s~~~l~~r~ 251 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFA-LNIAQNVATKT------NENVAIFSLEM-SAQQLVMRM 251 (454)
T ss_dssp TTCEEEEECCTTSCHHHHH-HHHHHHHHHHS------SCCEEEEESSS-CHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH-HHHHHHHHHhC------CCcEEEEECCC-CHHHHHHHH
Confidence 4556999999999999744 33333333211 33577776332 223444443
No 165
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.39 E-value=0.35 Score=45.18 Aligned_cols=39 Identities=23% Similarity=0.435 Sum_probs=26.2
Q ss_pred CCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEc
Q 013858 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFS 307 (435)
Q Consensus 268 ~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~S 307 (435)
....++||||+|.+.. .....+.+++...+....+++.+
T Consensus 109 ~~~~viiiDe~~~l~~-~~~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTN-AAQNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCH-HHHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCH-HHHHHHHHHHhcCCCCeEEEEEe
Confidence 4579999999997743 23455666777666666555544
No 166
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=94.35 E-value=0.13 Score=53.80 Aligned_cols=60 Identities=20% Similarity=0.250 Sum_probs=53.9
Q ss_pred CcEEEEeCchHHHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCCC
Q 013858 375 PLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYKL 434 (435)
Q Consensus 375 ~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~L 434 (435)
.+++|.++++.-+.+.++.+++. |+.+..+||+++..+|...++.+.+|..+|+|+|..+
T Consensus 418 ~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~l 481 (780)
T 1gm5_A 418 FQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHAL 481 (780)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTH
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHH
Confidence 46999999999998888887654 7899999999999999999999999999999999754
No 167
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=94.33 E-value=0.042 Score=52.82 Aligned_cols=17 Identities=24% Similarity=0.311 Sum_probs=14.1
Q ss_pred CCEEE--EccCCCchhHHh
Q 013858 159 RDLLG--CAETGSGKTAAF 175 (435)
Q Consensus 159 ~~vii--~~~TGsGKT~~~ 175 (435)
..+++ .|+.|+|||+..
T Consensus 51 ~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp EEEEEECTTCCSSSHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHH
Confidence 35888 999999999853
No 168
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.30 E-value=0.033 Score=53.83 Aligned_cols=54 Identities=17% Similarity=0.162 Sum_probs=29.6
Q ss_pred CCCCcccCCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHh
Q 013858 119 PIESFTDMCLHPSIMKDIEFH---EYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 119 ~~~~~~~~~l~~~l~~~l~~~---~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~ 175 (435)
|--+|++++=-....+.|... .+..|--++...+ -..+.+++.||+|+|||+.+
T Consensus 167 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~---~~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGI---DPPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTTTHHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCceEEEECCCCCCHHHHH
Confidence 445788886555555554321 1111111111111 12356999999999999843
No 169
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=94.06 E-value=0.13 Score=50.81 Aligned_cols=41 Identities=20% Similarity=0.360 Sum_probs=25.5
Q ss_pred ceEEEEecCCcccCCC----------CHHHHHHHHHhCCCCCeEEEEcccc
Q 013858 270 VSFVILDEADRMLDMG----------FEPQIREVMQNLPDKHQTLLFSATM 310 (435)
Q Consensus 270 ~~~iIiDEah~~~~~~----------~~~~i~~i~~~~~~~~q~i~~SATl 310 (435)
-.+|+|||+|.+.... ....+...+..+.....++++.||=
T Consensus 298 p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn 348 (489)
T 3hu3_A 298 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATN 348 (489)
T ss_dssp SEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEES
T ss_pred CcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecC
Confidence 3689999999765421 2234555556555555566666664
No 170
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.82 E-value=0.046 Score=52.56 Aligned_cols=54 Identities=22% Similarity=0.334 Sum_probs=30.0
Q ss_pred CCCCcccCCCCHHHHHHHHHC---CCCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHh
Q 013858 119 PIESFTDMCLHPSIMKDIEFH---EYTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 119 ~~~~~~~~~l~~~l~~~l~~~---~~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~ 175 (435)
|-.+|++++=-+...+.|... .+..|--++...++ ..+.+++.||.|+|||+.+
T Consensus 177 p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~---~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIK---PPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp CCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCC---CCSEEEEESSTTTTHHHHH
T ss_pred CCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCCCceECCCCchHHHHH
Confidence 445788886444444444321 11222222222111 2367999999999999843
No 171
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.75 E-value=0.38 Score=46.39 Aligned_cols=43 Identities=23% Similarity=0.217 Sum_probs=25.2
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEc--cChhhHH
Q 013858 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA--PTRELAQ 208 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~--P~r~la~ 208 (435)
++.+.++|+.|+|||+.. ..+...+.. .+.+++++. +.+..+.
T Consensus 98 ~~vi~i~G~~GsGKTT~~--~~LA~~l~~------~g~~Vllvd~D~~r~aa~ 142 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTA--AKLALYYKG------KGRRPLLVAADTQRPAAR 142 (425)
T ss_dssp SEEEEEECCTTSSHHHHH--HHHHHHHHT------TTCCEEEEECCSSCHHHH
T ss_pred CeEEEEECCCCCCHHHHH--HHHHHHHHH------cCCeEEEeeccccCchhH
Confidence 345778899999999854 333333332 144566554 4555443
No 172
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.66 E-value=0.12 Score=50.38 Aligned_cols=49 Identities=20% Similarity=0.162 Sum_probs=28.0
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHH
Q 013858 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEV 214 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~ 214 (435)
|.-++++|++|+|||+.+ +-+....... .+..++++.-- .-..|+..++
T Consensus 200 G~l~ii~G~pg~GKT~la-l~ia~~~a~~------~g~~vl~~slE-~~~~~l~~R~ 248 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFA-LTIAQNAALK------EGVGVGIYSLE-MPAAQLTLRM 248 (444)
T ss_dssp TCEEEEEECTTSCHHHHH-HHHHHHHHHT------TCCCEEEEESS-SCHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHH-HHHHHHHHHh------CCCeEEEEECC-CCHHHHHHHH
Confidence 455999999999999643 4444333321 13457776643 2233444444
No 173
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=93.37 E-value=0.065 Score=43.25 Aligned_cols=21 Identities=19% Similarity=0.064 Sum_probs=17.3
Q ss_pred HhcCCCEEEEccCCCchhHHh
Q 013858 155 ALSGRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 155 ~~~~~~vii~~~TGsGKT~~~ 175 (435)
...+.++++.|++|+|||+.+
T Consensus 24 ~~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHHH
T ss_pred hCCCCcEEEECCCCccHHHHH
Confidence 346678999999999999743
No 174
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.21 E-value=0.68 Score=45.38 Aligned_cols=34 Identities=26% Similarity=0.289 Sum_probs=22.8
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEE
Q 013858 159 RDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVL 200 (435)
Q Consensus 159 ~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil 200 (435)
..+.++|++|+|||+ ++-.+..++... ++.+++.
T Consensus 294 eVI~LVGpNGSGKTT--Ll~~LAgll~~~------~G~V~l~ 327 (503)
T 2yhs_A 294 FVILMVGVNGVGKTT--TIGKLARQFEQQ------GKSVMLA 327 (503)
T ss_dssp EEEEEECCTTSSHHH--HHHHHHHHHHHT------TCCEEEE
T ss_pred eEEEEECCCcccHHH--HHHHHHHHhhhc------CCeEEEe
Confidence 458899999999998 445555444321 4556665
No 175
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=93.12 E-value=0.36 Score=52.66 Aligned_cols=60 Identities=18% Similarity=0.210 Sum_probs=54.7
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHh---CCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcC
Q 013858 373 PFPLTIVFVERKTRCDEVSEALVA---EGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSY 432 (435)
Q Consensus 373 ~~~~~lVF~~~~~~~~~l~~~L~~---~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~ 432 (435)
.+.++||.++++.-|.++++.++. .++.+..+||+.+..+|...++.+..|..+|+|+|.
T Consensus 120 ~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp 182 (1104)
T 4ddu_A 120 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFST 182 (1104)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEH
T ss_pred cCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECH
Confidence 345699999999999999999998 467999999999998999999999999999999995
No 176
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=93.11 E-value=0.21 Score=43.82 Aligned_cols=19 Identities=26% Similarity=0.153 Sum_probs=16.1
Q ss_pred cCCCEEEEccCCCchhHHh
Q 013858 157 SGRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~ 175 (435)
.|.-+++.||+|+|||+.+
T Consensus 23 ~G~~~~i~G~~GsGKTtl~ 41 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQIC 41 (243)
T ss_dssp TTSEEEEECCTTSSHHHHH
T ss_pred CCeEEEEECCCCCcHHHHH
Confidence 4567999999999999854
No 177
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=92.99 E-value=2.6 Score=38.93 Aligned_cols=51 Identities=18% Similarity=0.383 Sum_probs=29.1
Q ss_pred cHHHHHHHHcCCCCCCCceEEEEecCCcccC---CCCHHHHHHHHHhCCCCCeEEEEc
Q 013858 253 PGRFLDHLQQGNTSLSRVSFVILDEADRMLD---MGFEPQIREVMQNLPDKHQTLLFS 307 (435)
Q Consensus 253 ~~~l~~~l~~~~~~l~~~~~iIiDEah~~~~---~~~~~~i~~i~~~~~~~~q~i~~S 307 (435)
...+++.+.... . +--+|||||+|.+.. ..+...+..+.... .+..+|+.+
T Consensus 124 ~~~l~~~l~~~~-~--~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~g 177 (357)
T 2fna_A 124 FANLLESFEQAS-K--DNVIIVLDEAQELVKLRGVNLLPALAYAYDNL-KRIKFIMSG 177 (357)
T ss_dssp HHHHHHHHHHTC-S--SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHC-TTEEEEEEE
T ss_pred HHHHHHHHHhcC-C--CCeEEEEECHHHhhccCchhHHHHHHHHHHcC-CCeEEEEEc
Confidence 345555554321 1 244899999998754 34666666666554 245444443
No 178
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=92.97 E-value=0.4 Score=43.92 Aligned_cols=54 Identities=17% Similarity=0.353 Sum_probs=28.3
Q ss_pred CCceEEEEecCCccc--CC-CCHHHHHHHHHhCCCCCeEEEEcccccHHHHHHHHHH
Q 013858 268 SRVSFVILDEADRML--DM-GFEPQIREVMQNLPDKHQTLLFSATMPVEIEALAQEY 321 (435)
Q Consensus 268 ~~~~~iIiDEah~~~--~~-~~~~~i~~i~~~~~~~~q~i~~SATl~~~~~~~~~~~ 321 (435)
.++++||||=+-++. .. .....+..+......+.-++.+.|+-.......++.+
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~~~~~ 235 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKF 235 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHH
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHHHHHHHHHH
Confidence 467899999987653 11 1122233333334445446666776544444444444
No 179
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=92.97 E-value=0.032 Score=49.51 Aligned_cols=19 Identities=37% Similarity=0.459 Sum_probs=16.5
Q ss_pred cCCCEEEEccCCCchhHHh
Q 013858 157 SGRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~ 175 (435)
.|.-+.+.||+|+|||+.+
T Consensus 29 ~G~~~~l~GpnGsGKSTLl 47 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFA 47 (251)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHH
Confidence 6778999999999999843
No 180
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.94 E-value=0.19 Score=48.65 Aligned_cols=17 Identities=35% Similarity=0.346 Sum_probs=14.6
Q ss_pred CCEEEEccCCCchhHHh
Q 013858 159 RDLLGCAETGSGKTAAF 175 (435)
Q Consensus 159 ~~vii~~~TGsGKT~~~ 175 (435)
..++++|++|+|||+.+
T Consensus 100 ~vI~ivG~~GvGKTTla 116 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTA 116 (432)
T ss_dssp CCEEEECCSSSSTTHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46899999999999854
No 181
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=92.70 E-value=0.19 Score=50.41 Aligned_cols=26 Identities=27% Similarity=0.284 Sum_probs=19.1
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHH
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQHCV 184 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~~~ 184 (435)
.+..+++.||+|+|||+. +-++....
T Consensus 107 ~g~~vll~Gp~GtGKTtl--ar~ia~~l 132 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSL--AKSIAKSL 132 (543)
T ss_dssp CSCEEEEESSSSSSHHHH--HHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHH--HHHHHHhc
Confidence 467899999999999984 33444433
No 182
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.53 E-value=0.11 Score=46.78 Aligned_cols=28 Identities=25% Similarity=0.262 Sum_probs=20.2
Q ss_pred HhcCCCEEEEccCCCchhHHhHHHHHHHHH
Q 013858 155 ALSGRDLLGCAETGSGKTAAFTIPMIQHCV 184 (435)
Q Consensus 155 ~~~~~~vii~~~TGsGKT~~~~~~~l~~~~ 184 (435)
+..|..++++||||||||+. +-++..+.
T Consensus 22 i~~g~~v~i~Gp~GsGKSTl--l~~l~g~~ 49 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTT--IASMIDYI 49 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHH--HHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHH--HHHHHHhC
Confidence 34677799999999999984 44444433
No 183
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=92.42 E-value=0.94 Score=41.76 Aligned_cols=51 Identities=14% Similarity=0.010 Sum_probs=30.5
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHH
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKA 216 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~ 216 (435)
.|.-++++|++|+|||+.+ +-+....... +..++++.-- .-..|+..++..
T Consensus 67 ~G~l~li~G~pG~GKTtl~-l~ia~~~a~~-------g~~vl~~slE-~s~~~l~~R~~~ 117 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFA-LKQAKNMSDN-------DDVVNLHSLE-MGKKENIKRLIV 117 (315)
T ss_dssp TTCEEEEECCTTSSHHHHH-HHHHHHHHTT-------TCEEEEEESS-SCHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHH-HHHHHHHHHc-------CCeEEEEECC-CCHHHHHHHHHH
Confidence 4567999999999999643 3333333321 3457777633 334455555543
No 184
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=92.27 E-value=0.36 Score=48.14 Aligned_cols=58 Identities=19% Similarity=0.289 Sum_probs=54.7
Q ss_pred CcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcC
Q 013858 375 PLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSY 432 (435)
Q Consensus 375 ~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~ 432 (435)
+.+||.++++.-+.+.++.|+..|+.+..+||+.+..++..++..+..|..+||++|+
T Consensus 66 g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 66 GLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 4699999999999999999999999999999999999999999999999999999984
No 185
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=91.84 E-value=2.2 Score=35.94 Aligned_cols=72 Identities=18% Similarity=0.278 Sum_probs=53.0
Q ss_pred CCeEEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHH----hCCCcEEEECcHHHHHHHHcCCCCCCC
Q 013858 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSR 269 (435)
Q Consensus 194 ~~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~T~~~l~~~l~~~~~~l~~ 269 (435)
++++||.++++.-+..+.+.++.. ++.+..++|+....+....+ .+..+|+|+|. .+.. .+++..
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~-----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----~~~~-Gldi~~ 122 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK-----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD-----VASK-GLDFPA 122 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH-----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH-----HHHT-TCCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC-----chhc-CCCccc
Confidence 457999999999988888877664 57788899988766544333 35679999993 3333 667888
Q ss_pred ceEEEEe
Q 013858 270 VSFVILD 276 (435)
Q Consensus 270 ~~~iIiD 276 (435)
+++||.=
T Consensus 123 v~~VI~~ 129 (191)
T 2p6n_A 123 IQHVINY 129 (191)
T ss_dssp CSEEEES
T ss_pred CCEEEEe
Confidence 8888763
No 186
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=91.83 E-value=0.33 Score=49.16 Aligned_cols=59 Identities=12% Similarity=0.147 Sum_probs=54.2
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHH--HcCCCcEEEEcC
Q 013858 374 FPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDF--RNGSTNILVFSY 432 (435)
Q Consensus 374 ~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f--~~g~~~VLVaT~ 432 (435)
.+.+||.++++.-+.+.++.|+..|+.+..++|+++..++..++..+ ..+..+|||+|+
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 34699999999999999999999999999999999999999999888 578999999996
No 187
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=91.81 E-value=1.3 Score=42.87 Aligned_cols=44 Identities=20% Similarity=0.141 Sum_probs=26.2
Q ss_pred CEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEc--cChhhHHHH
Q 013858 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA--PTRELAQQI 210 (435)
Q Consensus 160 ~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~--P~r~la~q~ 210 (435)
.++++|+.|+|||+.. .-+..++... .|.+++++. |.+..+...
T Consensus 102 vI~ivG~~GvGKTT~a-~~LA~~l~~~------~G~kVllvd~D~~r~~a~~q 147 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSV-GKLGKFLREK------HKKKVLVVSADVYRPAAIKQ 147 (433)
T ss_dssp EEEEECSTTSSHHHHH-HHHHHHHHHT------SCCCEEEEECCCSSTTHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHHHHHHh------cCCeEEEEecCCCCccHHHH
Confidence 5778899999999864 2233333331 034566655 666555443
No 188
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=91.75 E-value=0.31 Score=47.03 Aligned_cols=35 Identities=20% Similarity=0.160 Sum_probs=22.1
Q ss_pred HHHHHHHHh--cCCCEEEEccCCCchhHHhHHHHHHHHH
Q 013858 148 QAQAMPVAL--SGRDLLGCAETGSGKTAAFTIPMIQHCV 184 (435)
Q Consensus 148 Q~~~i~~~~--~~~~vii~~~TGsGKT~~~~~~~l~~~~ 184 (435)
+...+..++ .|..++++||||||||+ ++-++..+.
T Consensus 155 ~~~~L~~l~~~~ggii~I~GpnGSGKTT--lL~allg~l 191 (418)
T 1p9r_A 155 NHDNFRRLIKRPHGIILVTGPTGSGKST--TLYAGLQEL 191 (418)
T ss_dssp HHHHHHHHHTSSSEEEEEECSTTSCHHH--HHHHHHHHH
T ss_pred HHHHHHHHHHhcCCeEEEECCCCCCHHH--HHHHHHhhc
Confidence 344444444 33458999999999998 344444433
No 189
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=91.74 E-value=0.15 Score=53.29 Aligned_cols=55 Identities=15% Similarity=0.191 Sum_probs=33.4
Q ss_pred CCCCCcccCCCCHHHHHHHHHCCC---CCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHh
Q 013858 118 APIESFTDMCLHPSIMKDIEFHEY---TRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 118 ~~~~~~~~~~l~~~l~~~l~~~~~---~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~ 175 (435)
.|...|++++--....+.|...-. ..|..++... +...+.+++.||.|+|||+.+
T Consensus 471 ~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g---~~~~~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG---MTPSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSC---CCCCSCCEEESSTTSSHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcC---CCCCceEEEecCCCCCchHHH
Confidence 345578888877888877765422 2222111100 012356999999999999743
No 190
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.46 E-value=0.25 Score=42.66 Aligned_cols=37 Identities=22% Similarity=0.073 Sum_probs=28.6
Q ss_pred cHHHHHHHHHHhcCCCEEEEccCCCchhHHhHHHHHHHH
Q 013858 145 TSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHC 183 (435)
Q Consensus 145 ~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~ 183 (435)
+.-|..++..+..|..+.+.||.|+|||+ ++-++.-+
T Consensus 9 ~~g~~~~l~~i~~Ge~~~liG~nGsGKST--Ll~~l~Gl 45 (208)
T 3b85_A 9 TLGQKHYVDAIDTNTIVFGLGPAGSGKTY--LAMAKAVQ 45 (208)
T ss_dssp SHHHHHHHHHHHHCSEEEEECCTTSSTTH--HHHHHHHH
T ss_pred CHhHHHHHHhccCCCEEEEECCCCCCHHH--HHHHHhcC
Confidence 44577788888889999999999999998 44444443
No 191
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=91.37 E-value=1.4 Score=43.46 Aligned_cols=43 Identities=19% Similarity=0.095 Sum_probs=25.8
Q ss_pred CEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEc--cChhhHHHH
Q 013858 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA--PTRELAQQI 210 (435)
Q Consensus 160 ~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~--P~r~la~q~ 210 (435)
.++++|++|+|||+.+ .-+..++... |.+++++. |.|..+..+
T Consensus 103 vI~ivG~~GvGKTTl~-~kLA~~l~~~-------G~kVllVd~D~~r~aa~~q 147 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTC-SKLAYYYQRK-------GWKTCLICADTFRAGAFDQ 147 (504)
T ss_dssp EEEEECSTTSSHHHHH-HHHHHHHHHT-------TCCEEEEEECCSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHHHHHhC-------CCeEEEEeccccchhHHHH
Confidence 4889999999999854 2233333321 34566655 455555444
No 192
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.01 E-value=0.2 Score=57.25 Aligned_cols=59 Identities=22% Similarity=0.307 Sum_probs=36.1
Q ss_pred HHHHhc------CCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcC
Q 013858 152 MPVALS------GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSL 221 (435)
Q Consensus 152 i~~~~~------~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~ 221 (435)
+..++. ++++++.||+|+|||+.+ +.+...... .|.+++++..--.+.. .. ++.++-.+
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA-~ala~ea~~-------~G~~v~Fi~~e~~~~~-l~--a~~~G~dl 1479 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLT-LQVIAAAQR-------EGKTCAFIDAEHALDP-IY--ARKLGVDI 1479 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHH-HHHHHHHHT-------TTCCEEEECTTSCCCH-HH--HHHTTCCT
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHH-HHHHHHHHH-------cCCcEEEEEcccccCH-HH--HHHcCCCc
Confidence 555555 678999999999999865 333332222 2567888876544322 22 45555433
No 193
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=90.95 E-value=0.51 Score=43.45 Aligned_cols=50 Identities=12% Similarity=0.094 Sum_probs=31.2
Q ss_pred CEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHh
Q 013858 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (435)
Q Consensus 160 ~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~ 218 (435)
-+.+.||.|+|||+.. +.++...... ..+..++++..-..+.. .++++++
T Consensus 30 iteI~G~pGsGKTtL~-Lq~~~~~~~~-----g~g~~vlyId~E~s~~~---~ra~~lG 79 (333)
T 3io5_A 30 LLILAGPSKSFKSNFG-LTMVSSYMRQ-----YPDAVCLFYDSEFGITP---AYLRSMG 79 (333)
T ss_dssp EEEEEESSSSSHHHHH-HHHHHHHHHH-----CTTCEEEEEESSCCCCH---HHHHHTT
T ss_pred eEEEECCCCCCHHHHH-HHHHHHHHhc-----CCCceEEEEeccchhhH---HHHHHhC
Confidence 5899999999999754 4444443332 11467888876544432 2356665
No 194
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=90.84 E-value=0.21 Score=46.70 Aligned_cols=49 Identities=18% Similarity=0.193 Sum_probs=29.6
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHH
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEV 214 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~ 214 (435)
.|.-+++.|++|+|||+.+ +-+...+... +..++|+..- .-..|+..++
T Consensus 45 ~G~LiiIaG~pG~GKTt~a-l~ia~~~a~~-------g~~Vl~fSlE-ms~~ql~~Rl 93 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLM-MNMVLSALND-------DRGVAVFSLE-MSAEQLALRA 93 (338)
T ss_dssp TTCEEEEEECTTSCHHHHH-HHHHHHHHHT-------TCEEEEEESS-SCHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHH-HHHHHHHHHc-------CCeEEEEeCC-CCHHHHHHHH
Confidence 4556999999999999643 4343333331 4567777643 2334444444
No 195
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=90.84 E-value=0.28 Score=46.18 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=17.7
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHH
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQH 182 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~ 182 (435)
.+..++++||||||||+. +-++..
T Consensus 122 ~~g~i~I~GptGSGKTTl--L~~l~g 145 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTT--LAAMLD 145 (356)
T ss_dssp SSEEEEEECSTTSCHHHH--HHHHHH
T ss_pred CCCEEEEECCCCCCHHHH--HHHHHh
Confidence 445799999999999984 444433
No 196
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=90.81 E-value=0.73 Score=48.91 Aligned_cols=17 Identities=35% Similarity=0.399 Sum_probs=14.8
Q ss_pred CCEEEEccCCCchhHHh
Q 013858 159 RDLLGCAETGSGKTAAF 175 (435)
Q Consensus 159 ~~vii~~~TGsGKT~~~ 175 (435)
++++++||+|+|||+.+
T Consensus 192 ~~vlL~G~pG~GKT~la 208 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIV 208 (854)
T ss_dssp CCCEEEECTTSCHHHHH
T ss_pred CceEEEcCCCCCHHHHH
Confidence 47999999999999843
No 197
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=90.67 E-value=0.38 Score=42.23 Aligned_cols=52 Identities=17% Similarity=0.204 Sum_probs=31.2
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHH
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~ 217 (435)
.|..+++.|++|+|||+.+ +-++...... +..++++.-. ....++.+++..+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~-~~~~~~~~~~-------~~~v~~~~~e-~~~~~~~~~~~~~ 73 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFS-QQFLWNGLKM-------GEPGIYVALE-EHPVQVRQNMAQF 73 (247)
T ss_dssp TTCEEEEEECTTSSHHHHH-HHHHHHHHHT-------TCCEEEEESS-SCHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHH-HHHHHHHHhc-------CCeEEEEEcc-CCHHHHHHHHHHc
Confidence 5677999999999999753 3333333331 3457776633 3345555555443
No 198
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=90.66 E-value=1.6 Score=41.64 Aligned_cols=25 Identities=20% Similarity=0.147 Sum_probs=18.6
Q ss_pred HHHHHh-----cCCCEEEEccCCCchhHHh
Q 013858 151 AMPVAL-----SGRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 151 ~i~~~~-----~~~~vii~~~TGsGKT~~~ 175 (435)
.+..++ .|.-+.|.|+.|+|||+..
T Consensus 166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl 195 (400)
T 3lda_A 166 NLDTLLGGGVETGSITELFGEFRTGKSQLC 195 (400)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHH
T ss_pred hHHHHhcCCcCCCcEEEEEcCCCCChHHHH
Confidence 345555 3466999999999999743
No 199
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=90.53 E-value=0.36 Score=45.39 Aligned_cols=42 Identities=24% Similarity=0.266 Sum_probs=27.0
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhh
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL 206 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~l 206 (435)
.|.-++|.||+|+|||+.. +.+...+... +..++++..-..+
T Consensus 60 ~G~i~~I~GppGsGKSTLa-l~la~~~~~~-------gg~VlyId~E~s~ 101 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLA-LHAIAEAQKM-------GGVAAFIDAEHAL 101 (356)
T ss_dssp TTEEEEEEESTTSSHHHHH-HHHHHHHHHT-------TCCEEEEESSCCC
T ss_pred CCcEEEEECCCCCCHHHHH-HHHHHHHHhc-------CCeEEEEeccccc
Confidence 3567999999999999743 4444433332 4568887754433
No 200
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=90.42 E-value=0.96 Score=38.92 Aligned_cols=55 Identities=13% Similarity=0.173 Sum_probs=44.9
Q ss_pred CcEEEEeCchHHHHHHHHHHHhC-----CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcC
Q 013858 375 PLTIVFVERKTRCDEVSEALVAE-----GLHAVALHGGRNQSDRESALRDFRNGSTNILVFSY 432 (435)
Q Consensus 375 ~~~lVF~~~~~~~~~l~~~L~~~-----~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~ 432 (435)
.++||.|+++.-+.++++.++.. ++.+..++|+....++.. .+..+..+|+|+|.
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~~i~v~T~ 142 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTP 142 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHH---HHHHSCCSEEEECH
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHH---HHhcCCCCEEEeCH
Confidence 47999999999999998888764 688999999998765543 44567789999995
No 201
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=90.37 E-value=1.5 Score=38.38 Aligned_cols=56 Identities=14% Similarity=0.245 Sum_probs=44.6
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcC
Q 013858 373 PFPLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVFSY 432 (435)
Q Consensus 373 ~~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~ 432 (435)
.+.++||.+++++-+.++++.++.. ++.+..++|+.+...+...+.. ..+|+|+|.
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp 160 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATP 160 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECH
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECH
Confidence 3567999999999999988877653 7899999999997766554432 478999995
No 202
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=90.29 E-value=1.8 Score=35.36 Aligned_cols=74 Identities=20% Similarity=0.306 Sum_probs=53.7
Q ss_pred CCeEEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHH----hCCCcEEEECcHHHHHHHHcCCCCCCC
Q 013858 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSR 269 (435)
Q Consensus 194 ~~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~T~~~l~~~l~~~~~~l~~ 269 (435)
+.++||.++++.-+..+.+.+... ++.+..++|+....+....+ .+..+|+|+|. .+ ...+++..
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gld~~~ 103 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL-----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-----VA-ARGIDIEN 103 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GG-TTTCCCSC
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hh-hcCCchhc
Confidence 457999999999988887777664 57888899988766544332 35578999994 22 33667888
Q ss_pred ceEEEEecC
Q 013858 270 VSFVILDEA 278 (435)
Q Consensus 270 ~~~iIiDEa 278 (435)
+++||.-+.
T Consensus 104 ~~~Vi~~~~ 112 (163)
T 2hjv_A 104 ISLVINYDL 112 (163)
T ss_dssp CSEEEESSC
T ss_pred CCEEEEeCC
Confidence 888886444
No 203
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=90.25 E-value=1.7 Score=43.41 Aligned_cols=67 Identities=12% Similarity=0.039 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEc
Q 013858 353 VDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGSTNILVFS 431 (435)
Q Consensus 353 ~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT 431 (435)
...+.+.+.+... ..++++|||+++....+++++. .+..+..-..+++ +...++.|+.+...||+||
T Consensus 378 ~~~l~~~i~~l~~------~~~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v 444 (551)
T 3crv_A 378 WKRYADYLLKIYF------QAKANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSS---VEDLYSAISANNKVLIGSV 444 (551)
T ss_dssp HHHHHHHHHHHHH------HCSSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEE
T ss_pred HHHHHHHHHHHHH------hCCCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEE
Confidence 4555666655443 2345799999999999999873 3445444333555 3557778865455899997
No 204
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=90.05 E-value=0.74 Score=43.46 Aligned_cols=39 Identities=15% Similarity=0.192 Sum_probs=25.6
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccC
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPT 203 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~ 203 (435)
.|+-++|.|++|+|||+.+ +.+....... +..++|+..-
T Consensus 73 ~G~li~I~G~pGsGKTtla-l~la~~~~~~-------g~~vlyi~~E 111 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLA-LAIVAQAQKA-------GGTCAFIDAE 111 (366)
T ss_dssp TTSEEEEEESTTSSHHHHH-HHHHHHHHHT-------TCCEEEEESS
T ss_pred CCcEEEEEcCCCCChHHHH-HHHHHHHHHC-------CCeEEEEECC
Confidence 4567999999999999754 4444444332 3457777643
No 205
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=89.97 E-value=2.4 Score=34.95 Aligned_cols=73 Identities=15% Similarity=0.222 Sum_probs=53.3
Q ss_pred CCeEEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHH----hCCCcEEEECcHHHHHHHHcCCCCCCC
Q 013858 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSR 269 (435)
Q Consensus 194 ~~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~T~~~l~~~l~~~~~~l~~ 269 (435)
+.++||.++++..+..+++.+... ++.+..++|+....+....+ .+..+|+|+|. .+ ...+++..
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~-~~Gid~~~ 102 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQD-----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN-----VC-ARGIDVKQ 102 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTT-----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC-----SC-CTTTCCTT
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec-----ch-hcCCCccc
Confidence 468999999999888887776653 57888899988766544333 35679999994 22 33677888
Q ss_pred ceEEEEec
Q 013858 270 VSFVILDE 277 (435)
Q Consensus 270 ~~~iIiDE 277 (435)
+++||.-+
T Consensus 103 ~~~Vi~~d 110 (175)
T 2rb4_A 103 VTIVVNFD 110 (175)
T ss_dssp EEEEEESS
T ss_pred CCEEEEeC
Confidence 99888543
No 206
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=89.72 E-value=0.21 Score=41.91 Aligned_cols=18 Identities=17% Similarity=0.252 Sum_probs=15.8
Q ss_pred cCCCEEEEccCCCchhHH
Q 013858 157 SGRDLLGCAETGSGKTAA 174 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~ 174 (435)
.|+-++++||+|+|||+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL 21 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHI 21 (180)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567799999999999984
No 207
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=89.52 E-value=0.31 Score=48.29 Aligned_cols=45 Identities=22% Similarity=0.056 Sum_probs=27.6
Q ss_pred HHHHHCCCCCCcHHHHHHHHH-HhcCCCEEEEccCCCchhHHhHHHHHHH
Q 013858 134 KDIEFHEYTRPTSIQAQAMPV-ALSGRDLLGCAETGSGKTAAFTIPMIQH 182 (435)
Q Consensus 134 ~~l~~~~~~~p~~~Q~~~i~~-~~~~~~vii~~~TGsGKT~~~~~~~l~~ 182 (435)
..+...|.. .+.+...+.. +..|..++++||||||||+ ++-++..
T Consensus 237 ~~l~~~G~~--~~~~l~~l~~~v~~g~~i~I~GptGSGKTT--lL~aL~~ 282 (511)
T 2oap_1 237 IDLIEKGTV--PSGVLAYLWLAIEHKFSAIVVGETASGKTT--TLNAIMM 282 (511)
T ss_dssp HHHHHTTSS--CHHHHHHHHHHHHTTCCEEEEESTTSSHHH--HHHHHGG
T ss_pred hhHHhcCCC--CHHHHHHHHHHHhCCCEEEEECCCCCCHHH--HHHHHHh
Confidence 444555532 3333333433 4478889999999999998 3444433
No 208
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=89.50 E-value=0.24 Score=42.29 Aligned_cols=25 Identities=16% Similarity=0.283 Sum_probs=18.1
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHH
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQHC 183 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~~ 183 (435)
.|+-++++||+|+|||+ ++-++..+
T Consensus 3 ~g~~i~lvGpsGaGKST--Ll~~L~~~ 27 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKST--LLKKLFQE 27 (198)
T ss_dssp --CCEEEECCTTSSHHH--HHHHHHHH
T ss_pred CCCEEEEECCCCCCHHH--HHHHHHhh
Confidence 46789999999999998 44555443
No 209
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=89.40 E-value=0.23 Score=46.97 Aligned_cols=26 Identities=31% Similarity=0.391 Sum_probs=20.3
Q ss_pred HhcCCCEEEEccCCCchhHHhHHHHHHH
Q 013858 155 ALSGRDLLGCAETGSGKTAAFTIPMIQH 182 (435)
Q Consensus 155 ~~~~~~vii~~~TGsGKT~~~~~~~l~~ 182 (435)
+..|..++++||||+|||+ ++-++..
T Consensus 172 i~~G~~i~ivG~sGsGKST--ll~~l~~ 197 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTT--LMKALMQ 197 (361)
T ss_dssp HHTTCCEEEEESSSSCHHH--HHHHHHT
T ss_pred HhcCCEEEEECCCCCCHHH--HHHHHHh
Confidence 4478899999999999998 4444443
No 210
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=89.26 E-value=1.1 Score=47.08 Aligned_cols=18 Identities=33% Similarity=0.445 Sum_probs=15.6
Q ss_pred cCCCEEEEccCCCchhHH
Q 013858 157 SGRDLLGCAETGSGKTAA 174 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~ 174 (435)
.++.++++||+|+|||+.
T Consensus 237 ~~~~vLL~Gp~GtGKTtL 254 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLI 254 (806)
T ss_dssp CCCEEEECSCTTSSHHHH
T ss_pred CCCeEEEECcCCCCHHHH
Confidence 456799999999999984
No 211
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=88.84 E-value=0.65 Score=48.54 Aligned_cols=18 Identities=39% Similarity=0.399 Sum_probs=15.4
Q ss_pred CCCEEEEccCCCchhHHh
Q 013858 158 GRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~ 175 (435)
+.+++++||+|+|||+.+
T Consensus 207 ~~~vlL~G~~GtGKT~la 224 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIA 224 (758)
T ss_dssp SCEEEEECCTTSSHHHHH
T ss_pred CCCeEEEcCCCCCHHHHH
Confidence 457999999999999854
No 212
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=88.77 E-value=2.5 Score=34.46 Aligned_cols=75 Identities=17% Similarity=0.275 Sum_probs=54.0
Q ss_pred CCeEEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHH----hCCCcEEEECcHHHHHHHHcCCCCCCC
Q 013858 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSR 269 (435)
Q Consensus 194 ~~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~T~~~l~~~l~~~~~~l~~ 269 (435)
+.++||.++++.-+..+...++.. ++.+..++|+....+....+ .+..+|+|+|. .+ ...+++..
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~G~d~~~ 98 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND-----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----LL-ARGIDVQQ 98 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-----GG-TTTCCCCS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC-----hh-hcCCCccc
Confidence 467999999999888887777653 57788899988766544332 35678999994 22 33667888
Q ss_pred ceEEEEecCC
Q 013858 270 VSFVILDEAD 279 (435)
Q Consensus 270 ~~~iIiDEah 279 (435)
+++||.-+..
T Consensus 99 ~~~Vi~~~~p 108 (165)
T 1fuk_A 99 VSLVINYDLP 108 (165)
T ss_dssp CSEEEESSCC
T ss_pred CCEEEEeCCC
Confidence 8888875443
No 213
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=88.63 E-value=0.42 Score=46.33 Aligned_cols=44 Identities=20% Similarity=0.366 Sum_probs=30.8
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHH
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQ 208 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~ 208 (435)
...++++.|+||+|||..+ ..++..+... +..++|+=|..++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~-~~li~~~~~~-------g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL-RELAYTGLLR-------GDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHHHHT-------TCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHH-HHHHHHHHHC-------CCcEEEEeCCCchhH
Confidence 4578999999999999864 3444444443 456777778777643
No 214
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=88.56 E-value=1.4 Score=43.19 Aligned_cols=51 Identities=18% Similarity=0.244 Sum_probs=38.5
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHh
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALS 218 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~ 218 (435)
.+....+.|-||||||++ +..+..-. +..+|||+|+...|.++++.++.|.
T Consensus 13 ~~~~~~l~g~~gs~ka~~--~a~l~~~~---------~~p~lvv~~~~~~A~~l~~~l~~~~ 63 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATL--VAEIAERH---------AGPVVLIAPDMQNALRLHDEISQFT 63 (483)
T ss_dssp TTCEEEEECCCTTHHHHH--HHHHHHHS---------SSCEEEEESSHHHHHHHHHHHHHTC
T ss_pred CCCeEEEeCCCchHHHHH--HHHHHHHh---------CCCEEEEeCCHHHHHHHHHHHHhhC
Confidence 455689999999999984 33322211 2348999999999999999999885
No 215
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=88.53 E-value=1.9 Score=37.42 Aligned_cols=55 Identities=16% Similarity=0.164 Sum_probs=41.2
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcC
Q 013858 373 PFPLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVFSY 432 (435)
Q Consensus 373 ~~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~ 432 (435)
.+.++||.++++.-+.++++.++.. ++.+..++|+.+...+...+ +..+|+|+|.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp 154 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTP 154 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECH
Confidence 3457999999999999999988765 47899999998755443332 4689999995
No 216
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.43 E-value=0.35 Score=46.71 Aligned_cols=55 Identities=16% Similarity=0.237 Sum_probs=34.4
Q ss_pred CCCCCcccCCCCHHHHHHHHHCC---CCCCcHHHHHHHHHHhcCCCEEEEccCCCchhHHh
Q 013858 118 APIESFTDMCLHPSIMKDIEFHE---YTRPTSIQAQAMPVALSGRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 118 ~~~~~~~~~~l~~~l~~~l~~~~---~~~p~~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~ 175 (435)
.|..+|++++-.+...+.|...= +..|.-++...++ ..+.+++.||+|+|||+.+
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~---~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIR---APKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCC---CCCEEEEESCTTSSHHHHH
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCeeEEECcCCCCHHHHH
Confidence 46668999987777777664321 1222222222211 2467999999999999843
No 217
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=88.32 E-value=0.51 Score=43.23 Aligned_cols=54 Identities=13% Similarity=0.166 Sum_probs=29.8
Q ss_pred CCCCcccCCCCHHHHHHHHHCCCCCCcHHHH-HHHHH--HhcCCCEEEEccCCCchhHHh
Q 013858 119 PIESFTDMCLHPSIMKDIEFHEYTRPTSIQA-QAMPV--ALSGRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 119 ~~~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~-~~i~~--~~~~~~vii~~~TGsGKT~~~ 175 (435)
|..+|+++.-.+..++.+...-. .+... +.+.. +..++.+++.||+|+|||+.+
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v~---~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELVQ---YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHH---HHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHH---HHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 34468888656666665543210 00000 00111 124567999999999999843
No 218
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=88.13 E-value=2.6 Score=36.11 Aligned_cols=71 Identities=21% Similarity=0.306 Sum_probs=52.8
Q ss_pred CCeEEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHH----hCCCcEEEECcHHHHHHHHcCCCCCCC
Q 013858 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSR 269 (435)
Q Consensus 194 ~~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~T~~~l~~~l~~~~~~l~~ 269 (435)
+.++||.++++.-+..+.+.+... ++.+..++|+....++...+ .+..+|+|+|. .+ ...+++..
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~-~~Gidi~~ 99 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL-----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD-----VA-ARGLDIPQ 99 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH-----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT-----TT-TCSSSCCC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC-----hh-hcCCCCcc
Confidence 457999999999888887777664 57888899998876554333 35578999994 22 34677888
Q ss_pred ceEEEE
Q 013858 270 VSFVIL 275 (435)
Q Consensus 270 ~~~iIi 275 (435)
+++||.
T Consensus 100 v~~Vi~ 105 (212)
T 3eaq_A 100 VDLVVH 105 (212)
T ss_dssp BSEEEE
T ss_pred CcEEEE
Confidence 888874
No 219
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=88.10 E-value=0.38 Score=40.28 Aligned_cols=58 Identities=14% Similarity=0.138 Sum_probs=41.6
Q ss_pred cHHHHHHHHHHhcCC--CEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHH
Q 013858 145 TSIQAQAMPVALSGR--DLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQ 209 (435)
Q Consensus 145 ~~~Q~~~i~~~~~~~--~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q 209 (435)
.+-|..++..++..+ -.++.+.-|++||... +.-+..+... .|..+.+++|+......
T Consensus 36 ~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~-~a~L~~~a~~------~Gr~V~vLAp~~~s~~~ 95 (189)
T 2l8b_A 36 TAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRER-VAELVMMARE------QGREVQIIAADRRSQMN 95 (189)
T ss_dssp HHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHH-HHHHHHHHHH------TTCCEEEECSTTHHHHH
T ss_pred CccchhHHHHHhccCCceEEEecccchHHHHHH-HHHHHHHHHh------cCeEEEEEcCchHHHHH
Confidence 456888888887543 4899999999999874 3334443332 27889999999766443
No 220
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=88.10 E-value=1.2 Score=38.70 Aligned_cols=55 Identities=18% Similarity=0.207 Sum_probs=44.2
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhC-----CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcC
Q 013858 373 PFPLTIVFVERKTRCDEVSEALVAE-----GLHAVALHGGRNQSDRESALRDFRNGSTNILVFSY 432 (435)
Q Consensus 373 ~~~~~lVF~~~~~~~~~l~~~L~~~-----~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~ 432 (435)
...++||.|+++.-+.++++.++.. ++.+..++|+....++...+ ...+|+|+|.
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp 150 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSP 150 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECH
Confidence 3457999999999999999988764 67899999999876655433 3579999985
No 221
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=87.80 E-value=0.78 Score=43.69 Aligned_cols=42 Identities=21% Similarity=0.350 Sum_probs=28.7
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhh
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL 206 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~l 206 (435)
.+.+++++|+||+|||+... -++..+... +.+++++=|..+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~-~~~~~~~~~-------~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAK-MLLLREYMQ-------GSRVIIIDPEREY 75 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHH-HHHHHHHTT-------TCCEEEEESSCCS
T ss_pred ccCceEEEcCCCCCHHHHHH-HHHHHHHHC-------CCEEEEEeCCcCH
Confidence 56789999999999997542 233333322 5667887787764
No 222
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=87.75 E-value=1.4 Score=48.25 Aligned_cols=60 Identities=13% Similarity=0.165 Sum_probs=53.3
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcCC
Q 013858 374 FPLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVFSYK 433 (435)
Q Consensus 374 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~~ 433 (435)
+.+++|.|+++.-+.+.++.+++. ++.+..+++..+..++..+++.+..|..+|+|+|..
T Consensus 652 g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ 715 (1151)
T 2eyq_A 652 HKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHK 715 (1151)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTH
T ss_pred CCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHH
Confidence 347999999999999988888753 678999999999999999999999999999999964
No 223
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=87.64 E-value=4 Score=35.89 Aligned_cols=55 Identities=18% Similarity=0.287 Sum_probs=43.5
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcC
Q 013858 374 FPLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVFSY 432 (435)
Q Consensus 374 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~ 432 (435)
..++||.++++.-+.++++.++.. ++.+..++|+.....+...+ .+..+|+|+|.
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp 169 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATP 169 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECH
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECH
Confidence 456999999999999998888764 78899999999866554332 35689999994
No 224
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=87.57 E-value=0.59 Score=41.03 Aligned_cols=52 Identities=23% Similarity=0.339 Sum_probs=29.8
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHH-HHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHH
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQH-CVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~-~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~ 217 (435)
.|.-++++|++|+|||..+ +-++.. .... +..++++.-. .-..++.+++..+
T Consensus 29 ~G~l~~i~G~pG~GKT~l~-l~~~~~~~~~~-------~~~v~~~s~E-~~~~~~~~~~~~~ 81 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFA-AQFIYKGAEEY-------GEPGVFVTLE-ERARDLRREMASF 81 (251)
T ss_dssp TTCEEEEECCTTSSHHHHH-HHHHHHHHHHH-------CCCEEEEESS-SCHHHHHHHHHTT
T ss_pred CCeEEEEEeCCCCCHHHHH-HHHHHHHHHhc-------CCCceeeccc-CCHHHHHHHHHHc
Confidence 4567999999999999643 333322 2222 3346666533 3344555555443
No 225
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=87.30 E-value=0.26 Score=41.01 Aligned_cols=18 Identities=17% Similarity=0.257 Sum_probs=15.3
Q ss_pred CCCEEEEccCCCchhHHh
Q 013858 158 GRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~ 175 (435)
++.++++|++|+|||++.
T Consensus 3 ~~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456899999999999854
No 226
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=87.29 E-value=0.44 Score=42.60 Aligned_cols=19 Identities=26% Similarity=0.310 Sum_probs=16.2
Q ss_pred cCCCEEEEccCCCchhHHh
Q 013858 157 SGRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~ 175 (435)
.+.++++.|++|+|||+.+
T Consensus 28 ~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp SCSCEEEECCTTSCHHHHH
T ss_pred CCCCEEEECCCCCcHHHHH
Confidence 5678999999999999843
No 227
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=87.28 E-value=0.28 Score=45.67 Aligned_cols=26 Identities=38% Similarity=0.615 Sum_probs=19.8
Q ss_pred HhcCCCEEEEccCCCchhHHhHHHHHHH
Q 013858 155 ALSGRDLLGCAETGSGKTAAFTIPMIQH 182 (435)
Q Consensus 155 ~~~~~~vii~~~TGsGKT~~~~~~~l~~ 182 (435)
+..|..+.++|+||||||+ ++-++..
T Consensus 168 i~~g~~v~i~G~~GsGKTT--ll~~l~g 193 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTT--YIKSIME 193 (330)
T ss_dssp HHHTCCEEEEESTTSCHHH--HHHHGGG
T ss_pred ccCCCEEEEECCCCCCHHH--HHHHHhC
Confidence 3478899999999999998 4444433
No 228
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=87.26 E-value=0.43 Score=41.43 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=19.1
Q ss_pred hcCCCEEEEccCCCchhHHhHHHHHHH
Q 013858 156 LSGRDLLGCAETGSGKTAAFTIPMIQH 182 (435)
Q Consensus 156 ~~~~~vii~~~TGsGKT~~~~~~~l~~ 182 (435)
..|.-+.++||+|+|||+ ++-++..
T Consensus 21 ~~G~~~~lvGpsGsGKST--Ll~~L~g 45 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGT--LIKKLLN 45 (218)
T ss_dssp -CCCCEEEECSTTSSHHH--HHHHHHH
T ss_pred CCCCEEEEECCCCCCHHH--HHHHHHh
Confidence 367889999999999998 4444444
No 229
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=87.24 E-value=0.42 Score=40.73 Aligned_cols=19 Identities=21% Similarity=0.118 Sum_probs=16.5
Q ss_pred cCCCEEEEccCCCchhHHh
Q 013858 157 SGRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~ 175 (435)
.++.++++|++|+|||+..
T Consensus 24 ~~~~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLG 42 (199)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHH
Confidence 5678999999999999853
No 230
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=87.17 E-value=0.27 Score=41.25 Aligned_cols=18 Identities=22% Similarity=0.150 Sum_probs=15.5
Q ss_pred CCCEEEEccCCCchhHHh
Q 013858 158 GRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~ 175 (435)
++.++++|++|||||+..
T Consensus 5 ~~~i~l~G~~GsGKst~a 22 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVG 22 (185)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 467999999999999854
No 231
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=87.17 E-value=3.4 Score=30.71 Aligned_cols=48 Identities=19% Similarity=0.367 Sum_probs=41.1
Q ss_pred EEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHHHcCC
Q 013858 377 TIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQSDRESALRDFRNGS 424 (435)
Q Consensus 377 ~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~ 424 (435)
.+||...-+-...+...++..|..+..++++.....|.+-++.|....
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqg 52 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQG 52 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTT
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcC
Confidence 578888888888999999999999999999999888888888886543
No 232
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=87.15 E-value=0.41 Score=40.31 Aligned_cols=24 Identities=17% Similarity=0.307 Sum_probs=17.8
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHH
Q 013858 158 GRDLLGCAETGSGKTAAFTIPMIQHC 183 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~~~~~l~~~ 183 (435)
++-+++.||+|+|||+ ++-++..+
T Consensus 1 ~~ii~l~GpsGaGKsT--l~~~L~~~ 24 (186)
T 3a00_A 1 SRPIVISGPSGTGKST--LLKKLFAE 24 (186)
T ss_dssp CCCEEEESSSSSSHHH--HHHHHHHH
T ss_pred CCEEEEECCCCCCHHH--HHHHHHhh
Confidence 3568899999999998 44455443
No 233
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=87.13 E-value=0.4 Score=40.83 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=18.5
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHH
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQH 182 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~ 182 (435)
.|.-+.+.||+|+|||+. +-++..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl--~~~L~~ 29 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSL--VRALVK 29 (205)
T ss_dssp CCCEEEEECCTTSCHHHH--HHHHHH
T ss_pred CCcEEEEECcCCCCHHHH--HHHHHh
Confidence 567799999999999984 444444
No 234
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=87.12 E-value=0.74 Score=43.32 Aligned_cols=19 Identities=37% Similarity=0.378 Sum_probs=16.0
Q ss_pred cCCCEEEEccCCCchhHHh
Q 013858 157 SGRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~ 175 (435)
...++++.||+|+|||+.+
T Consensus 50 ~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3467999999999999854
No 235
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=87.06 E-value=0.87 Score=50.18 Aligned_cols=58 Identities=16% Similarity=0.096 Sum_probs=40.5
Q ss_pred CEEEEccCCCchhHHhHHHHHHHHHhcCC----CCCCCCCeEEEEccChhhHHHHHHHHHHH
Q 013858 160 DLLGCAETGSGKTAAFTIPMIQHCVAQTP----VGRGDGPLALVLAPTRELAQQIEKEVKAL 217 (435)
Q Consensus 160 ~vii~~~TGsGKT~~~~~~~l~~~~~~~~----~~~~~~~~~lil~P~r~la~q~~~~~~~~ 217 (435)
..+|.|.-|||||.+..--++..+...+. ...-....+|+|+=|+..|..+.+++.+.
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~ 79 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHH
Confidence 45999999999998765555555544210 00112357999999999999999888653
No 236
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=87.00 E-value=0.33 Score=46.05 Aligned_cols=27 Identities=26% Similarity=0.282 Sum_probs=19.6
Q ss_pred hcCCCEEEEccCCCchhHHhHHHHHHHHH
Q 013858 156 LSGRDLLGCAETGSGKTAAFTIPMIQHCV 184 (435)
Q Consensus 156 ~~~~~vii~~~TGsGKT~~~~~~~l~~~~ 184 (435)
..|..++++||||||||+. +-++..+.
T Consensus 134 ~~g~~i~ivG~~GsGKTTl--l~~l~~~~ 160 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTT--IASMIDYI 160 (372)
T ss_dssp SSSEEEEEECSSSSSHHHH--HHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHH--HHHHHhhc
Confidence 3566799999999999984 44444433
No 237
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=86.83 E-value=0.66 Score=42.58 Aligned_cols=36 Identities=31% Similarity=0.362 Sum_probs=23.8
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEc
Q 013858 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 201 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~ 201 (435)
+..+.+.||+|+|||+ ++..+..+... .++.+++..
T Consensus 102 g~vi~lvG~nGsGKTT--ll~~Lagll~~------~~g~V~l~g 137 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTT--TIAKLGRYYQN------LGKKVMFCA 137 (304)
T ss_dssp SSEEEEECSTTSSHHH--HHHHHHHHHHT------TTCCEEEEC
T ss_pred CeEEEEECCCCCcHHH--HHHHHHHHHHh------cCCEEEEEe
Confidence 4568899999999998 45555554442 134555554
No 238
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=86.77 E-value=6.6 Score=32.19 Aligned_cols=75 Identities=13% Similarity=0.097 Sum_probs=54.3
Q ss_pred CCeEEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHH----hCCCcEEEECcHHHHHHHHcCCCCCCC
Q 013858 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSR 269 (435)
Q Consensus 194 ~~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~T~~~l~~~l~~~~~~l~~ 269 (435)
+.++||.++++.-+..+++.+... ++.+..++|+....+....+ .+...|+|+|.- + ...+++..
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~-~~Gldi~~ 99 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQ-----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL-----F-GRGMDIER 99 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSC-----C-STTCCGGG
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc-----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCc-----h-hcCcchhh
Confidence 457999999999988887777664 57788899988766544332 356799999951 1 33667788
Q ss_pred ceEEEEecCC
Q 013858 270 VSFVILDEAD 279 (435)
Q Consensus 270 ~~~iIiDEah 279 (435)
+++||.-+..
T Consensus 100 ~~~Vi~~d~p 109 (172)
T 1t5i_A 100 VNIAFNYDMP 109 (172)
T ss_dssp CSEEEESSCC
T ss_pred CCEEEEECCC
Confidence 8888875544
No 239
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=86.76 E-value=0.41 Score=41.19 Aligned_cols=18 Identities=22% Similarity=0.316 Sum_probs=15.6
Q ss_pred cCCCEEEEccCCCchhHH
Q 013858 157 SGRDLLGCAETGSGKTAA 174 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~ 174 (435)
.|.-++++||+|+|||+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl 24 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTV 24 (208)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 466799999999999984
No 240
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=86.63 E-value=0.24 Score=41.37 Aligned_cols=19 Identities=26% Similarity=0.165 Sum_probs=16.4
Q ss_pred cCCCEEEEccCCCchhHHh
Q 013858 157 SGRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~ 175 (435)
.++.++++|++|+|||+..
T Consensus 10 ~~~~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLG 28 (180)
T ss_dssp CCCCEEEECSTTSSHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHH
Confidence 5678999999999999853
No 241
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=86.49 E-value=0.29 Score=41.94 Aligned_cols=20 Identities=25% Similarity=0.380 Sum_probs=16.7
Q ss_pred hcCCCEEEEccCCCchhHHh
Q 013858 156 LSGRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 156 ~~~~~vii~~~TGsGKT~~~ 175 (435)
..|+-++++|++|+|||+..
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHH
Confidence 35678999999999999843
No 242
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=86.46 E-value=0.81 Score=45.16 Aligned_cols=28 Identities=21% Similarity=0.202 Sum_probs=21.9
Q ss_pred HHHHHHHHhcCCCEEEEccCCCchhHHh
Q 013858 148 QAQAMPVALSGRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 148 Q~~~i~~~~~~~~vii~~~TGsGKT~~~ 175 (435)
-..++..+..+.++++.||+|+|||+.+
T Consensus 31 i~~l~~al~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 31 IRLCLLAALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHHHHHTCEEEEECCSSSSHHHHH
T ss_pred HHHHHHHHhcCCeeEeecCchHHHHHHH
Confidence 3445555668899999999999999843
No 243
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=86.46 E-value=0.47 Score=40.49 Aligned_cols=18 Identities=17% Similarity=0.357 Sum_probs=16.1
Q ss_pred cCCCEEEEccCCCchhHH
Q 013858 157 SGRDLLGCAETGSGKTAA 174 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~ 174 (435)
.|+-++++||+|+|||+.
T Consensus 18 ~g~~ivl~GPSGaGKsTL 35 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHI 35 (197)
T ss_dssp SCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECcCCCCHHHH
Confidence 677899999999999984
No 244
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=86.28 E-value=0.51 Score=38.91 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=17.5
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHH
Q 013858 158 GRDLLGCAETGSGKTAAFTIPMIQH 182 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~~~~~l~~ 182 (435)
+..++++|+.|||||+. .-++..
T Consensus 4 ~~~i~l~G~~GsGKSTl--~~~La~ 26 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTI--GRQLAQ 26 (173)
T ss_dssp CCCEEEECCTTSCHHHH--HHHHHH
T ss_pred CCeEEEECCCCCCHHHH--HHHHHH
Confidence 56799999999999984 344443
No 245
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=86.24 E-value=0.4 Score=40.82 Aligned_cols=19 Identities=21% Similarity=0.256 Sum_probs=16.4
Q ss_pred hcCCCEEEEccCCCchhHH
Q 013858 156 LSGRDLLGCAETGSGKTAA 174 (435)
Q Consensus 156 ~~~~~vii~~~TGsGKT~~ 174 (435)
..|.-++++|++|||||+.
T Consensus 4 ~~g~~i~l~G~~GsGKSTl 22 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTV 22 (207)
T ss_dssp CCCCEEEEECSTTSCHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4577899999999999984
No 246
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=86.23 E-value=0.29 Score=41.23 Aligned_cols=19 Identities=42% Similarity=0.564 Sum_probs=16.2
Q ss_pred hcCCCEEEEccCCCchhHH
Q 013858 156 LSGRDLLGCAETGSGKTAA 174 (435)
Q Consensus 156 ~~~~~vii~~~TGsGKT~~ 174 (435)
..|..++++|+.|+|||+.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp CTTEEEEEEECTTSCHHHH
T ss_pred CCCeEEEEECCCCCCHHHH
Confidence 3567799999999999983
No 247
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=86.17 E-value=0.28 Score=45.58 Aligned_cols=18 Identities=28% Similarity=0.301 Sum_probs=15.0
Q ss_pred CCCEEEEccCCCchhHHh
Q 013858 158 GRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~ 175 (435)
++.++|+||||+|||...
T Consensus 40 ~~lIvI~GPTgsGKTtLa 57 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLS 57 (339)
T ss_dssp CEEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 346999999999999854
No 248
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=85.97 E-value=0.32 Score=40.01 Aligned_cols=16 Identities=31% Similarity=0.272 Sum_probs=13.8
Q ss_pred CEEEEccCCCchhHHh
Q 013858 160 DLLGCAETGSGKTAAF 175 (435)
Q Consensus 160 ~vii~~~TGsGKT~~~ 175 (435)
.++++|++|||||+..
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999854
No 249
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=85.95 E-value=0.66 Score=42.57 Aligned_cols=36 Identities=22% Similarity=0.362 Sum_probs=23.6
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEc
Q 013858 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 201 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~ 201 (435)
|..+.++|++|+|||+ ++..+..+... .++.+++..
T Consensus 100 g~vi~lvG~nGsGKTT--ll~~Lag~l~~------~~g~V~l~g 135 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTT--SLGKLAHRLKN------EGTKVLMAA 135 (302)
T ss_dssp CEEEEEECCTTSCHHH--HHHHHHHHHHH------TTCCEEEEC
T ss_pred CcEEEEEcCCCCCHHH--HHHHHHHHHHH------cCCeEEEEe
Confidence 4568899999999998 44555554432 134566654
No 250
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=85.88 E-value=1.1 Score=50.76 Aligned_cols=89 Identities=17% Similarity=0.264 Sum_probs=55.5
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHH
Q 013858 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAE 237 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 237 (435)
|+.+.|.||.|||||+.+ ++++....+. |..++++.+--+|-... ++.++-.+.
T Consensus 1431 g~~iei~g~~~sGkttl~-~~~~a~~~~~-------g~~~~~i~~e~~~~~~~---~~~~Gv~~~--------------- 1484 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLT-LQVIAAAQRE-------GKTCAFIDAEHALDPIY---ARKLGVDID--------------- 1484 (1706)
T ss_dssp TSEEEEECSTTSSHHHHH-HHHHHHHHHT-------TCCEEEECTTSCCCHHH---HHHTTCCGG---------------
T ss_pred CCEEEEEcCCCCCHHHHH-HHHHHHHHhc-------CCeEEEEecCCCCCHHH---HHHcCCCHH---------------
Confidence 467999999999999875 5666544443 67899999876665443 666654432
Q ss_pred HHHHHhCCCcEEEECcHH---HHHHHHcCCCCCCCceEEEEecCCccc
Q 013858 238 QRSELRGGVSIVVATPGR---FLDHLQQGNTSLSRVSFVILDEADRML 282 (435)
Q Consensus 238 ~~~~~~~~~~I~v~T~~~---l~~~l~~~~~~l~~~~~iIiDEah~~~ 282 (435)
++++.-|+. .+..+.. ...-..+++||||.+-.+.
T Consensus 1485 ---------~l~~~~p~~~e~~l~~~~~-~~~s~~~~~vvvDsv~al~ 1522 (1706)
T 3cmw_A 1485 ---------NLLCSQPDTGEQALEICDA-LARSGAVDVIVVDSVAALT 1522 (1706)
T ss_dssp ---------GCEEECCSSHHHHHHHHHH-HHHHTCCSEEEESCSTTCC
T ss_pred ---------HeEEeCCCcHHHHHHHHHH-HHHcCCCCEEEEccHHhCC
Confidence 245555532 2222211 1111347899999988654
No 251
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=85.79 E-value=3.5 Score=37.24 Aligned_cols=18 Identities=33% Similarity=0.423 Sum_probs=15.7
Q ss_pred CCCEEEEccCCCchhHHh
Q 013858 158 GRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~ 175 (435)
..++++.||+|+|||+.+
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 568999999999999854
No 252
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=85.75 E-value=1.1 Score=40.56 Aligned_cols=18 Identities=33% Similarity=0.396 Sum_probs=15.6
Q ss_pred CCCEEEEccCCCchhHHh
Q 013858 158 GRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~ 175 (435)
++.+++.||+|+|||+.+
T Consensus 54 ~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CSEEEEESSSSSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 467999999999999853
No 253
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=85.51 E-value=0.34 Score=41.36 Aligned_cols=19 Identities=26% Similarity=0.410 Sum_probs=15.6
Q ss_pred cCCCEEEEccCCCchhHHh
Q 013858 157 SGRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~ 175 (435)
.|+-++++||||+|||..+
T Consensus 33 ~g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETA 51 (205)
T ss_dssp TTEEEEEECCCTTTTHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 3566999999999999743
No 254
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=85.46 E-value=0.32 Score=54.24 Aligned_cols=25 Identities=20% Similarity=0.501 Sum_probs=19.6
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHH
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQHC 183 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~~ 183 (435)
.|..+-|+|+||||||+ ++-++..+
T Consensus 1104 ~Ge~vaIVG~SGsGKST--L~~lL~rl 1128 (1321)
T 4f4c_A 1104 PGQTLALVGPSGCGKST--VVALLERF 1128 (1321)
T ss_dssp TTCEEEEECSTTSSTTS--HHHHHTTS
T ss_pred CCCEEEEECCCCChHHH--HHHHHhcC
Confidence 57889999999999998 44455443
No 255
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=85.44 E-value=11 Score=37.52 Aligned_cols=78 Identities=15% Similarity=0.113 Sum_probs=59.1
Q ss_pred CCeEEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHH----hCCCcEEEECcHHHHHHHHcCCCCCCC
Q 013858 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSR 269 (435)
Q Consensus 194 ~~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~T~~~l~~~l~~~~~~l~~ 269 (435)
+.++||.++++.-+..+++.+++.... ++.+..++|+....+....+ .+..+|+|+|. .+ ...+++..
T Consensus 339 ~~~~iVF~~s~~~~~~l~~~L~~~~~~--~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~-~~GiDip~ 410 (563)
T 3i5x_A 339 NYKAIIFAPTVKFTSFLCSILKNEFKK--DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VG-ARGMDFPN 410 (563)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHHTT--TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GG-TSSCCCTT
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHhccC--CceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc-----hh-hcCCCccc
Confidence 568999999999999998888776532 67888899988776544333 36689999995 22 34678889
Q ss_pred ceEEEEecCC
Q 013858 270 VSFVILDEAD 279 (435)
Q Consensus 270 ~~~iIiDEah 279 (435)
+++||.-...
T Consensus 411 v~~VI~~~~p 420 (563)
T 3i5x_A 411 VHEVLQIGVP 420 (563)
T ss_dssp CCEEEEESCC
T ss_pred CCEEEEECCC
Confidence 9999876654
No 256
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=85.41 E-value=0.37 Score=44.72 Aligned_cols=24 Identities=21% Similarity=0.153 Sum_probs=19.1
Q ss_pred HHHHhcCCCEEEEccCCCchhHHh
Q 013858 152 MPVALSGRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 152 i~~~~~~~~vii~~~TGsGKT~~~ 175 (435)
...+..+.++++.||+|+|||+.+
T Consensus 40 ~~~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 40 LIGICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHHHcCCeEEEECCCCCcHHHHH
Confidence 344456889999999999999843
No 257
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=85.35 E-value=0.56 Score=40.20 Aligned_cols=28 Identities=18% Similarity=0.273 Sum_probs=19.8
Q ss_pred HHhcCCCEEEEccCCCchhHHhHHHHHHHH
Q 013858 154 VALSGRDLLGCAETGSGKTAAFTIPMIQHC 183 (435)
Q Consensus 154 ~~~~~~~vii~~~TGsGKT~~~~~~~l~~~ 183 (435)
.+..|.-+.+.||+|+|||+ ++-++..+
T Consensus 16 ~i~~Gei~~l~GpnGsGKST--Ll~~l~gl 43 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKST--VVRCLRER 43 (207)
T ss_dssp ---CCCEEEEECSTTSSHHH--HHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHH--HHHHHHhh
Confidence 45678889999999999998 44445443
No 258
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=85.33 E-value=0.42 Score=40.40 Aligned_cols=16 Identities=25% Similarity=0.511 Sum_probs=14.3
Q ss_pred CCEEEEccCCCchhHH
Q 013858 159 RDLLGCAETGSGKTAA 174 (435)
Q Consensus 159 ~~vii~~~TGsGKT~~ 174 (435)
+-+|++||+|+|||+.
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5689999999999984
No 259
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=85.32 E-value=0.56 Score=40.79 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=18.7
Q ss_pred hcCCCEEEEccCCCchhHHhHHHHHHH
Q 013858 156 LSGRDLLGCAETGSGKTAAFTIPMIQH 182 (435)
Q Consensus 156 ~~~~~vii~~~TGsGKT~~~~~~~l~~ 182 (435)
..|.-++++||.|+|||+ ++-++..
T Consensus 14 ~~G~ii~l~GpsGsGKST--Llk~L~g 38 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSS--LIQALLK 38 (219)
T ss_dssp -CCCEEEEECCTTSCHHH--HHHHHHH
T ss_pred CCCcEEEEECCCCCCHHH--HHHHHhc
Confidence 357789999999999998 4444444
No 260
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=85.31 E-value=0.35 Score=43.14 Aligned_cols=16 Identities=38% Similarity=0.102 Sum_probs=13.7
Q ss_pred CEEEEccCCCchhHHh
Q 013858 160 DLLGCAETGSGKTAAF 175 (435)
Q Consensus 160 ~vii~~~TGsGKT~~~ 175 (435)
.++++|++|||||+.+
T Consensus 3 li~I~G~~GSGKSTla 18 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 3789999999999854
No 261
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=85.26 E-value=1.5 Score=39.29 Aligned_cols=43 Identities=19% Similarity=0.156 Sum_probs=29.9
Q ss_pred HHHHHHHHHCCCCCCcHHHHHH-HHHHhcCC-----CEEEEccCCCchhHHh
Q 013858 130 PSIMKDIEFHEYTRPTSIQAQA-MPVALSGR-----DLLGCAETGSGKTAAF 175 (435)
Q Consensus 130 ~~l~~~l~~~~~~~p~~~Q~~~-i~~~~~~~-----~vii~~~TGsGKT~~~ 175 (435)
..+.+.|+..|+. +++-.. +..+++++ .+++.||.|+|||+.+
T Consensus 73 n~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a 121 (267)
T 1u0j_A 73 NRIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIA 121 (267)
T ss_dssp CHHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHH
Confidence 4677888888875 444332 44444443 4999999999999854
No 262
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.16 E-value=0.62 Score=45.04 Aligned_cols=18 Identities=28% Similarity=0.333 Sum_probs=15.4
Q ss_pred CCCEEEEccCCCchhHHh
Q 013858 158 GRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~ 175 (435)
.+.+++.||+|+|||+.+
T Consensus 215 prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 367999999999999843
No 263
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=85.10 E-value=0.23 Score=44.99 Aligned_cols=52 Identities=13% Similarity=0.192 Sum_probs=25.8
Q ss_pred CCCcccCCCCHHHHHHHHHCCCCCCcHHHH-HHHHHHh--cCCCEEEEccCCCchhHH
Q 013858 120 IESFTDMCLHPSIMKDIEFHEYTRPTSIQA-QAMPVAL--SGRDLLGCAETGSGKTAA 174 (435)
Q Consensus 120 ~~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~-~~i~~~~--~~~~vii~~~TGsGKT~~ 174 (435)
..+|++++-.+.+.+.|...-. .|+.. ..+..+- -.+.+++.||.|+|||+.
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i~---~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtL 60 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAIL---APVRNPDQFKALGLVTPAGVLLAGPPGCGKTLL 60 (274)
T ss_dssp ------CCHHHHHHHHHHHHHT---HHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHH---HHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHH
Confidence 3458888766666666644211 12211 1222211 123499999999999983
No 264
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=85.08 E-value=2.5 Score=39.65 Aligned_cols=56 Identities=13% Similarity=0.154 Sum_probs=45.6
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhC-----CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcC
Q 013858 374 FPLTIVFVERKTRCDEVSEALVAE-----GLHAVALHGGRNQSDRESALRDFRNGSTNILVFSY 432 (435)
Q Consensus 374 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~ 432 (435)
..++||.|+++.-+.++++.++.. ++.+..++|+.+..++.. .+..+..+|+|+|.
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~iiv~T~ 136 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTP 136 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHH---HHHHSCCSEEEECH
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHH---HHhcCCCCEEEECH
Confidence 457999999999999998888764 788999999998765544 34567789999994
No 265
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=85.08 E-value=0.4 Score=40.26 Aligned_cols=19 Identities=32% Similarity=0.480 Sum_probs=16.1
Q ss_pred cCCCEEEEccCCCchhHHh
Q 013858 157 SGRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~ 175 (435)
.+..++++|++|||||++.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMA 27 (184)
T ss_dssp SSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4567999999999999843
No 266
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=85.03 E-value=0.35 Score=44.46 Aligned_cols=17 Identities=24% Similarity=0.130 Sum_probs=14.3
Q ss_pred CCEEEEccCCCchhHHh
Q 013858 159 RDLLGCAETGSGKTAAF 175 (435)
Q Consensus 159 ~~vii~~~TGsGKT~~~ 175 (435)
+-++|+||||+|||..+
T Consensus 4 ~~i~i~GptgsGKt~la 20 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTS 20 (322)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCcCCHHHHH
Confidence 45789999999999854
No 267
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=84.69 E-value=2.6 Score=35.52 Aligned_cols=56 Identities=23% Similarity=0.288 Sum_probs=43.2
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhC--CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcC
Q 013858 373 PFPLTIVFVERKTRCDEVSEALVAE--GLHAVALHGGRNQSDRESALRDFRNGSTNILVFSY 432 (435)
Q Consensus 373 ~~~~~lVF~~~~~~~~~l~~~L~~~--~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~ 432 (435)
.+.++||.|+++.-+.++++.++.. ++.+..++|+.....+...+. ...+|+|+|.
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~ 128 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATP 128 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECH
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECH
Confidence 4567999999999999999999876 468899999887554443332 2578999985
No 268
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=84.57 E-value=0.8 Score=39.62 Aligned_cols=18 Identities=33% Similarity=0.178 Sum_probs=15.6
Q ss_pred cCCCEEEEccCCCchhHH
Q 013858 157 SGRDLLGCAETGSGKTAA 174 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~ 174 (435)
.|.-+.+.||+|+|||+.
T Consensus 24 ~G~~~~l~G~nGsGKSTl 41 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQL 41 (231)
T ss_dssp SSEEEEEEESTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 456799999999999984
No 269
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=84.50 E-value=1.4 Score=37.77 Aligned_cols=44 Identities=18% Similarity=0.257 Sum_probs=29.2
Q ss_pred HHHHHHHHHCCCCCCcHHHHHHHHHHhcC----CCEEEEccCCCchhHHh
Q 013858 130 PSIMKDIEFHEYTRPTSIQAQAMPVALSG----RDLLGCAETGSGKTAAF 175 (435)
Q Consensus 130 ~~l~~~l~~~~~~~p~~~Q~~~i~~~~~~----~~vii~~~TGsGKT~~~ 175 (435)
..+.+.|+..++. +..+ ...+..++++ +.+++.||.|+|||+.+
T Consensus 28 ~~I~~~l~yq~~~-~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 28 RPIVQFLRYQQIE-FITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp HHHHHHHHHTTCC-HHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred HHHHHHHHHcCcC-HHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 4566777777653 3333 4445555544 35999999999999754
No 270
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=84.45 E-value=0.59 Score=40.11 Aligned_cols=27 Identities=15% Similarity=0.166 Sum_probs=19.1
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHh
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVA 185 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~~~~ 185 (435)
.|.-+.|.||+|||||+ ++-++..+..
T Consensus 21 ~g~~v~I~G~sGsGKST--l~~~l~~~~~ 47 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKST--LSNPLAAALS 47 (208)
T ss_dssp SCEEEEEECCTTSCTHH--HHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHH--HHHHHHHHHh
Confidence 34568899999999998 4445554443
No 271
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=84.38 E-value=0.43 Score=43.77 Aligned_cols=16 Identities=38% Similarity=0.326 Sum_probs=13.8
Q ss_pred CEEEEccCCCchhHHh
Q 013858 160 DLLGCAETGSGKTAAF 175 (435)
Q Consensus 160 ~vii~~~TGsGKT~~~ 175 (435)
-++|+||||+|||..+
T Consensus 12 ~i~i~GptgsGKt~la 27 (316)
T 3foz_A 12 AIFLMGPTASGKTALA 27 (316)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 4789999999999854
No 272
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=84.30 E-value=2.5 Score=35.37 Aligned_cols=71 Identities=23% Similarity=0.294 Sum_probs=43.1
Q ss_pred CCeEEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHH---H-hCCCcEEEECcHHHHHHHHcCCCCCCC
Q 013858 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSE---L-RGGVSIVVATPGRFLDHLQQGNTSLSR 269 (435)
Q Consensus 194 ~~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~I~v~T~~~l~~~l~~~~~~l~~ 269 (435)
+.++||.++++.-+..+.+.++.. ++.+..++|+....+.... + .+...|+|+|. .+ ...+++..
T Consensus 46 ~~k~lVF~~~~~~~~~l~~~L~~~-----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~-~~Gldi~~ 114 (185)
T 2jgn_A 46 DSLTLVFVETKKGADSLEDFLYHE-----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VA-ARGLDISN 114 (185)
T ss_dssp CSCEEEEESCHHHHHHHHHHHHHT-----TCCEEEEC--------CHHHHHHHHTSSSEEEEEC------------CCCS
T ss_pred CCeEEEEECCHHHHHHHHHHHHHc-----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC-----hh-hcCCCccc
Confidence 567999999999888887777653 5778888887654433222 2 35678999994 22 23567778
Q ss_pred ceEEEE
Q 013858 270 VSFVIL 275 (435)
Q Consensus 270 ~~~iIi 275 (435)
+++||.
T Consensus 115 ~~~VI~ 120 (185)
T 2jgn_A 115 VKHVIN 120 (185)
T ss_dssp BSEEEE
T ss_pred CCEEEE
Confidence 888776
No 273
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=84.25 E-value=0.71 Score=39.27 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=18.3
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHH
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQH 182 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~ 182 (435)
.|..++++|+.|+|||+. +-++..
T Consensus 28 ~g~~i~l~G~~GsGKSTl--~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTI--AHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHH--HHHHHH
T ss_pred CCcEEEEECCCCCCHHHH--HHHHHH
Confidence 467799999999999984 444443
No 274
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=84.15 E-value=0.72 Score=38.56 Aligned_cols=18 Identities=17% Similarity=0.231 Sum_probs=15.4
Q ss_pred CCCEEEEccCCCchhHHh
Q 013858 158 GRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~ 175 (435)
+..++++|+.|||||+..
T Consensus 3 ~~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 567999999999999843
No 275
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=84.09 E-value=2.8 Score=35.38 Aligned_cols=56 Identities=18% Similarity=0.246 Sum_probs=42.9
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhC-----CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcC
Q 013858 373 PFPLTIVFVERKTRCDEVSEALVAE-----GLHAVALHGGRNQSDRESALRDFRNGSTNILVFSY 432 (435)
Q Consensus 373 ~~~~~lVF~~~~~~~~~l~~~L~~~-----~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~ 432 (435)
...++||.++++.-+.++++.++.. +..+..++|+....+.... + .+..+|+|+|.
T Consensus 70 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~i~v~T~ 130 (206)
T 1vec_A 70 DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR---L-DDTVHVVIATP 130 (206)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH---T-TSCCSEEEECH
T ss_pred CCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh---c-CCCCCEEEeCH
Confidence 3457999999999999998888653 5789999999886544322 2 35678999985
No 276
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=83.94 E-value=0.4 Score=39.77 Aligned_cols=19 Identities=21% Similarity=0.142 Sum_probs=16.0
Q ss_pred cCCCEEEEccCCCchhHHh
Q 013858 157 SGRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~ 175 (435)
.|.-+.++||.|||||+.+
T Consensus 8 ~gei~~l~G~nGsGKSTl~ 26 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFA 26 (171)
T ss_dssp SSEEEEEECCTTSCHHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 4667899999999999843
No 277
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=83.89 E-value=3.1 Score=41.04 Aligned_cols=50 Identities=8% Similarity=0.029 Sum_probs=28.9
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHH
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEV 214 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~ 214 (435)
.|.-++|.|++|+|||+.. +-+....... .+..++++.-- .-..|+..++
T Consensus 241 ~G~l~li~G~pG~GKT~la-l~~a~~~a~~------~g~~vl~~s~E-~s~~~l~~r~ 290 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFV-RQQALQWGTA------MGKKVGLAMLE-ESVEETAEDL 290 (503)
T ss_dssp TTCEEEEEESSCHHHHHHH-HHHHHHHTTT------SCCCEEEEESS-SCHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHH-HHHHHHHHHh------cCCcEEEEecc-CCHHHHHHHH
Confidence 4556999999999999643 4333333321 13457776632 2334554444
No 278
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=83.88 E-value=0.7 Score=42.40 Aligned_cols=19 Identities=26% Similarity=0.366 Sum_probs=16.1
Q ss_pred cCCCEEEEccCCCchhHHh
Q 013858 157 SGRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~ 175 (435)
.+.++++.|++|+|||+.+
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH
T ss_pred CCCcEEEECCCCchHHHHH
Confidence 4567999999999999843
No 279
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=83.87 E-value=6.2 Score=37.30 Aligned_cols=71 Identities=24% Similarity=0.303 Sum_probs=53.5
Q ss_pred CCeEEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHH----hCCCcEEEECcHHHHHHHHcCCCCCCC
Q 013858 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSR 269 (435)
Q Consensus 194 ~~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~T~~~l~~~l~~~~~~l~~ 269 (435)
+.++||.++++..+..+++.+++. ++.+..++|+....+....+ .+..+|+|+|. .+. ..+++..
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~-~Gidip~ 344 (417)
T 2i4i_A 276 DSLTLVFVETKKGADSLEDFLYHE-----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAA-RGLDISN 344 (417)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HHH-TTSCCCC
T ss_pred CCeEEEEECCHHHHHHHHHHHHHC-----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhh-cCCCccc
Confidence 578999999999988887777663 57888899988866544333 35678999994 333 3678888
Q ss_pred ceEEEE
Q 013858 270 VSFVIL 275 (435)
Q Consensus 270 ~~~iIi 275 (435)
+++||.
T Consensus 345 v~~Vi~ 350 (417)
T 2i4i_A 345 VKHVIN 350 (417)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 888875
No 280
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=83.75 E-value=1 Score=37.59 Aligned_cols=19 Identities=32% Similarity=0.247 Sum_probs=15.6
Q ss_pred cCCCEEEEccCCCchhHHh
Q 013858 157 SGRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~ 175 (435)
.+..++++|+.|+|||+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~ 30 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIA 30 (186)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 3456899999999999843
No 281
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=83.72 E-value=0.92 Score=42.67 Aligned_cols=36 Identities=22% Similarity=0.362 Sum_probs=23.2
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEc
Q 013858 158 GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 201 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~ 201 (435)
|..+.++|++|+|||+ ++..+..+... .++.+++..
T Consensus 157 g~vi~lvG~nGsGKTT--ll~~Lag~l~~------~~G~V~l~g 192 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTT--SLGKLAHRLKN------EGTKVLMAA 192 (359)
T ss_dssp SEEEEEECCTTSCHHH--HHHHHHHHHHH------TTCCEEEEC
T ss_pred CeEEEEEcCCCChHHH--HHHHHHhhccc------cCCEEEEec
Confidence 3458899999999998 44555554432 134565554
No 282
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=83.51 E-value=0.48 Score=38.93 Aligned_cols=16 Identities=6% Similarity=-0.201 Sum_probs=13.8
Q ss_pred CEEEEccCCCchhHHh
Q 013858 160 DLLGCAETGSGKTAAF 175 (435)
Q Consensus 160 ~vii~~~TGsGKT~~~ 175 (435)
.++++|+.|+|||+..
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999853
No 283
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=83.38 E-value=0.8 Score=37.03 Aligned_cols=23 Identities=26% Similarity=0.232 Sum_probs=17.4
Q ss_pred CEEEEccCCCchhHHhHHHHHHHHH
Q 013858 160 DLLGCAETGSGKTAAFTIPMIQHCV 184 (435)
Q Consensus 160 ~vii~~~TGsGKT~~~~~~~l~~~~ 184 (435)
-.+|.||+|+|||.. +-++.+++
T Consensus 25 ~~~I~G~NGsGKSti--l~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL--LDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHH--HHHHHHHH
T ss_pred eEEEECCCCCCHHHH--HHHHHHHH
Confidence 478999999999984 55555544
No 284
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=83.37 E-value=0.7 Score=38.49 Aligned_cols=24 Identities=21% Similarity=0.105 Sum_probs=18.0
Q ss_pred CEEEEccCCCchhHHhHHHHHHHHHh
Q 013858 160 DLLGCAETGSGKTAAFTIPMIQHCVA 185 (435)
Q Consensus 160 ~vii~~~TGsGKT~~~~~~~l~~~~~ 185 (435)
-.+|+|++|+|||+ ++-++..++.
T Consensus 28 ~~~i~G~NGsGKSt--ll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSN--IGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHH--HHHHHHHHTT
T ss_pred cEEEECCCCCCHHH--HHHHHHHHHc
Confidence 57899999999998 4555555443
No 285
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=83.18 E-value=0.51 Score=39.11 Aligned_cols=16 Identities=31% Similarity=0.277 Sum_probs=13.8
Q ss_pred CEEEEccCCCchhHHh
Q 013858 160 DLLGCAETGSGKTAAF 175 (435)
Q Consensus 160 ~vii~~~TGsGKT~~~ 175 (435)
.++++|+.|||||+.+
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 4789999999999843
No 286
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=83.06 E-value=0.98 Score=40.13 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=19.1
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHH
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQH 182 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~ 182 (435)
.|..++++|++|+|||+. .-++..
T Consensus 47 ~g~~i~l~G~~GsGKSTl--~~~La~ 70 (250)
T 3nwj_A 47 NGRSMYLVGMMGSGKTTV--GKIMAR 70 (250)
T ss_dssp TTCCEEEECSTTSCHHHH--HHHHHH
T ss_pred CCCEEEEECCCCCCHHHH--HHHHHH
Confidence 489999999999999984 344444
No 287
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=83.04 E-value=0.96 Score=38.26 Aligned_cols=41 Identities=15% Similarity=0.224 Sum_probs=26.2
Q ss_pred CCCceEEEEecCCcc--cCCCCHHHHHHHHHhCCCCCeEEEEcccc
Q 013858 267 LSRVSFVILDEADRM--LDMGFEPQIREVMQNLPDKHQTLLFSATM 310 (435)
Q Consensus 267 l~~~~~iIiDEah~~--~~~~~~~~i~~i~~~~~~~~q~i~~SATl 310 (435)
..+.+++|+||+.++ .+..|...+..++.... .+|+-++|.
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~~---~~ilgti~v 145 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPG---TIILGTIPV 145 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSS---CCEEEECCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhCCC---cEEEEEeec
Confidence 466889999998766 33446667777766432 245445554
No 288
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=82.73 E-value=2.5 Score=36.48 Aligned_cols=56 Identities=18% Similarity=0.281 Sum_probs=39.4
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhC---CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcC
Q 013858 373 PFPLTIVFVERKTRCDEVSEALVAE---GLHAVALHGGRNQSDRESALRDFRNGSTNILVFSY 432 (435)
Q Consensus 373 ~~~~~lVF~~~~~~~~~l~~~L~~~---~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~ 432 (435)
.+.++||.++++.-+.++++.++.. ++.+..++|+.....+... +. ...+|+|+|.
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~iiv~Tp 151 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIED---IS-KGVDIIIATP 151 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHH---HH-SCCSEEEECH
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHH---hc-CCCCEEEECH
Confidence 4567999999999999999999874 6789999998876544333 22 3488999995
No 289
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=82.71 E-value=0.9 Score=42.68 Aligned_cols=25 Identities=32% Similarity=0.565 Sum_probs=20.2
Q ss_pred HHHHHhcCCC--EEEEccCCCchhHHh
Q 013858 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (435)
Q Consensus 151 ~i~~~~~~~~--vii~~~TGsGKT~~~ 175 (435)
.+..++.|.| ++.-|+||||||.+.
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 4566778887 788899999999864
No 290
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=82.70 E-value=18 Score=36.01 Aligned_cols=79 Identities=15% Similarity=0.111 Sum_probs=59.6
Q ss_pred CCeEEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHH----hCCCcEEEECcHHHHHHHHcCCCCCCC
Q 013858 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSR 269 (435)
Q Consensus 194 ~~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~T~~~l~~~l~~~~~~l~~ 269 (435)
+.++||.++++.-+..+++.+++.... ++.+..++|+....+....+ .+..+|+|+|. .+ ...+++..
T Consensus 288 ~~~~iVF~~t~~~~~~l~~~L~~~~~~--~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-----~~-~~GiDip~ 359 (579)
T 3sqw_A 288 NYKAIIFAPTVKFTSFLCSILKNEFKK--DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VG-ARGMDFPN 359 (579)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHHHTT--TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GG-TSSCCCTT
T ss_pred CCcEEEECCcHHHHHHHHHHHHHhhcC--CCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-----hh-hcCCCccc
Confidence 568999999999999999888776532 57888899988766544332 35689999995 22 34678889
Q ss_pred ceEEEEecCCc
Q 013858 270 VSFVILDEADR 280 (435)
Q Consensus 270 ~~~iIiDEah~ 280 (435)
+++||.-....
T Consensus 360 v~~VI~~~~p~ 370 (579)
T 3sqw_A 360 VHEVLQIGVPS 370 (579)
T ss_dssp CCEEEEESCCS
T ss_pred CCEEEEcCCCC
Confidence 99999776653
No 291
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=82.67 E-value=0.9 Score=38.00 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=16.7
Q ss_pred CEEEEccCCCchhHHhHHHHHHHHH
Q 013858 160 DLLGCAETGSGKTAAFTIPMIQHCV 184 (435)
Q Consensus 160 ~vii~~~TGsGKT~~~~~~~l~~~~ 184 (435)
.+.+.||.|+|||+ ++-++..+.
T Consensus 2 ~i~l~G~nGsGKTT--Ll~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTT--LVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHH--HHHHHHHHH
T ss_pred EEEEECCCCCCHHH--HHHHHHHHh
Confidence 47899999999998 444444433
No 292
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=82.51 E-value=0.42 Score=40.01 Aligned_cols=19 Identities=21% Similarity=0.340 Sum_probs=15.7
Q ss_pred cCCCEEEEccCCCchhHHh
Q 013858 157 SGRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~ 175 (435)
.|..++++|+.|||||+..
T Consensus 3 ~g~~I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQA 21 (186)
T ss_dssp CEEEEEEECCTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3556899999999999843
No 293
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=82.50 E-value=0.75 Score=42.21 Aligned_cols=26 Identities=15% Similarity=0.110 Sum_probs=20.3
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHH
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQHCV 184 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~~~ 184 (435)
.|..+.|+||+|+|||+ ++-++..+.
T Consensus 125 ~Ge~vaIvGpsGsGKST--Ll~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSM--LCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHH--HHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHH--HHHHHhhhc
Confidence 67789999999999998 455555544
No 294
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=82.48 E-value=3.7 Score=39.54 Aligned_cols=56 Identities=7% Similarity=0.096 Sum_probs=44.1
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcC
Q 013858 373 PFPLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVFSY 432 (435)
Q Consensus 373 ~~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~ 432 (435)
...++||.+++++-+.++++.+++. ++.+..++|+.+..++...+ ....+|+|+|.
T Consensus 128 ~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~Ivv~Tp 187 (434)
T 2db3_A 128 GRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECI----TRGCHVVIATP 187 (434)
T ss_dssp TCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHH----TTCCSEEEECH
T ss_pred CCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHh----hcCCCEEEECh
Confidence 3567999999999999999988764 57788999999876554332 24689999995
No 295
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=82.45 E-value=0.77 Score=37.93 Aligned_cols=18 Identities=28% Similarity=0.229 Sum_probs=15.2
Q ss_pred CCCEEEEccCCCchhHHh
Q 013858 158 GRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~ 175 (435)
|..++++|+.|+|||+.+
T Consensus 8 g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp SEEEEEECSTTSCHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 556899999999999843
No 296
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=82.38 E-value=1.2 Score=33.60 Aligned_cols=38 Identities=24% Similarity=0.234 Sum_probs=33.4
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCH
Q 013858 373 PFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQ 410 (435)
Q Consensus 373 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~ 410 (435)
+..+++|||.+-..+...+..|+..|+++..+.||+..
T Consensus 54 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~~ 91 (108)
T 3gk5_A 54 RDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQS 91 (108)
T ss_dssp TTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHHH
Confidence 34579999999999999999999999999999998653
No 297
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=82.37 E-value=2.1 Score=39.48 Aligned_cols=65 Identities=25% Similarity=0.170 Sum_probs=33.5
Q ss_pred HHHHHh-----cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhh-HHHHHHHHHHH
Q 013858 151 AMPVAL-----SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL-AQQIEKEVKAL 217 (435)
Q Consensus 151 ~i~~~~-----~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~l-a~q~~~~~~~~ 217 (435)
.+..++ .|.-+++.|++|+|||+.+ +-+...... .....+.+..++++.--..+ ..++...++.+
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la-~~la~~~~~-~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~ 165 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLC-HQLSVNVQL-PPEKGGLSGKAVYIDTEGTFRWERIENMAKAL 165 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHH-HHHHHHTTS-CGGGTCCSCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHH-HHHHHHHhc-ccccCCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 345555 3467999999999999743 222222111 10001114567777643322 34444444444
No 298
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=82.29 E-value=0.82 Score=38.87 Aligned_cols=19 Identities=26% Similarity=0.288 Sum_probs=16.0
Q ss_pred cCCCEEEEccCCCchhHHh
Q 013858 157 SGRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~ 175 (435)
.|..+++.|++|+|||+.+
T Consensus 24 ~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4667999999999999843
No 299
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=82.27 E-value=0.55 Score=41.73 Aligned_cols=18 Identities=28% Similarity=0.359 Sum_probs=15.1
Q ss_pred CCCEEEEccCCCchhHHh
Q 013858 158 GRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~ 175 (435)
.+.+++.||+|+|||+.+
T Consensus 45 ~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 346999999999999843
No 300
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=82.20 E-value=1.2 Score=38.06 Aligned_cols=19 Identities=26% Similarity=0.081 Sum_probs=15.8
Q ss_pred cCCCEEEEccCCCchhHHh
Q 013858 157 SGRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~ 175 (435)
.|.-+++.|++|+|||+.+
T Consensus 19 ~G~~~~i~G~~GsGKTtl~ 37 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLA 37 (220)
T ss_dssp TTSEEEEECSTTSSHHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 4567999999999999754
No 301
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=82.19 E-value=3.1 Score=36.59 Aligned_cols=55 Identities=11% Similarity=0.204 Sum_probs=42.1
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcC
Q 013858 374 FPLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVFSY 432 (435)
Q Consensus 374 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~ 432 (435)
..++||.|++++-+.++++.++.. ++.+..++|+....++...+ ....+|+|+|.
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp 158 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATP 158 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECH
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECH
Confidence 457999999999999998888754 57788999988755443322 35679999995
No 302
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=82.13 E-value=1 Score=41.74 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=19.7
Q ss_pred HHHHHhcCCC--EEEEccCCCchhHHh
Q 013858 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (435)
Q Consensus 151 ~i~~~~~~~~--vii~~~TGsGKT~~~ 175 (435)
.+..++.|.+ ++.-|+||||||.+.
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceEe
Confidence 4455668887 788999999999864
No 303
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=82.09 E-value=1.7 Score=40.74 Aligned_cols=18 Identities=28% Similarity=0.300 Sum_probs=15.5
Q ss_pred CCCEEEEccCCCchhHHh
Q 013858 158 GRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~ 175 (435)
.+.+++.||+|+|||+.+
T Consensus 117 ~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CSEEEEESSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 457999999999999854
No 304
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=82.00 E-value=0.92 Score=41.89 Aligned_cols=37 Identities=8% Similarity=0.179 Sum_probs=22.1
Q ss_pred CceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEEEcc
Q 013858 269 RVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLLFSA 308 (435)
Q Consensus 269 ~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~~SA 308 (435)
..+.+|++..+.+ +.. ..+...+..+.+...++..|-
T Consensus 151 ~ad~ill~k~dl~-de~--~~l~~~l~~l~~~~~ii~~sh 187 (318)
T 1nij_A 151 YADRILLTKTDVA-GEA--EKLHERLARINARAPVYTVTH 187 (318)
T ss_dssp TCSEEEEECTTTC-SCT--HHHHHHHHHHCSSSCEEECCS
T ss_pred hCCEEEEECcccC-CHH--HHHHHHHHHhCCCCeEEEecc
Confidence 3567888888755 322 556666655555555555544
No 305
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=81.99 E-value=2.9 Score=41.54 Aligned_cols=49 Identities=18% Similarity=0.254 Sum_probs=28.9
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhhHHHHHHHH
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTRELAQQIEKEV 214 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~la~q~~~~~ 214 (435)
.|..+++.|++|+|||+. +-++...... .|..++++++-.. ..++...+
T Consensus 280 ~G~i~~i~G~~GsGKSTL--l~~l~g~~~~------~G~~vi~~~~ee~-~~~l~~~~ 328 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLL--VSRFVENACA------NKERAILFAYEES-RAQLLRNA 328 (525)
T ss_dssp SSCEEEEEECTTSSHHHH--HHHHHHHHHT------TTCCEEEEESSSC-HHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHH--HHHHHHHHHh------CCCCEEEEEEeCC-HHHHHHHH
Confidence 567799999999999984 3333333321 1345677765432 23444433
No 306
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=81.94 E-value=0.84 Score=39.02 Aligned_cols=26 Identities=19% Similarity=0.082 Sum_probs=18.5
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHH
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQHCV 184 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~~~ 184 (435)
.|.-+.+.|++|||||+. +-++..+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl--~~~l~~~~ 30 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTL--AQALARTL 30 (211)
T ss_dssp CCEEEEEEESTTSSHHHH--HHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHH--HHHHHHHh
Confidence 345588999999999984 44554443
No 307
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=81.89 E-value=0.61 Score=43.09 Aligned_cols=16 Identities=25% Similarity=0.247 Sum_probs=14.1
Q ss_pred CEEEEccCCCchhHHh
Q 013858 160 DLLGCAETGSGKTAAF 175 (435)
Q Consensus 160 ~vii~~~TGsGKT~~~ 175 (435)
.++|+||||+|||+.+
T Consensus 7 ~i~i~GptGsGKTtla 22 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLA 22 (323)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999854
No 308
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=81.84 E-value=2.5 Score=39.03 Aligned_cols=24 Identities=8% Similarity=0.101 Sum_probs=17.9
Q ss_pred CEEEEccCCCchhHHhHHHHHHHHHh
Q 013858 160 DLLGCAETGSGKTAAFTIPMIQHCVA 185 (435)
Q Consensus 160 ~vii~~~TGsGKT~~~~~~~l~~~~~ 185 (435)
-+-+.|++|||||+. +-.+..+..
T Consensus 94 iigI~GpsGSGKSTl--~~~L~~ll~ 117 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTT--SRVLKALLS 117 (321)
T ss_dssp EEEEECCTTSSHHHH--HHHHHHHHT
T ss_pred EEEEECCCCCCHHHH--HHHHHHHhc
Confidence 478999999999984 455555544
No 309
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=81.74 E-value=9.3 Score=33.73 Aligned_cols=55 Identities=18% Similarity=0.141 Sum_probs=42.8
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcC
Q 013858 374 FPLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVFSY 432 (435)
Q Consensus 374 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~ 432 (435)
+.++||.++++.-+.++++.+++. +..+..++|+.....+... +..| .+|+|+|+
T Consensus 126 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~-~~Iiv~Tp 184 (262)
T 3ly5_A 126 GTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG-INIIVATP 184 (262)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC-CSEEEECH
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC-CCEEEEcH
Confidence 456999999999999999988764 5788899999886554433 3334 89999994
No 310
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=81.69 E-value=0.59 Score=43.95 Aligned_cols=18 Identities=44% Similarity=0.645 Sum_probs=15.4
Q ss_pred CCCEEEEccCCCchhHHh
Q 013858 158 GRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~ 175 (435)
++.+++.||+|+|||+.+
T Consensus 70 ~~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp TCEEEEEESTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 357999999999999854
No 311
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=81.62 E-value=0.69 Score=39.05 Aligned_cols=19 Identities=21% Similarity=0.232 Sum_probs=16.0
Q ss_pred cCCCEEEEccCCCchhHHh
Q 013858 157 SGRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~ 175 (435)
.+..++++|+.|||||+..
T Consensus 11 ~~~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp HSCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4567999999999999843
No 312
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=81.59 E-value=0.94 Score=42.26 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=19.3
Q ss_pred HHHHHhcCCC--EEEEccCCCchhHHh
Q 013858 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (435)
Q Consensus 151 ~i~~~~~~~~--vii~~~TGsGKT~~~ 175 (435)
.+..++.|.+ ++.-|+||||||.+.
T Consensus 86 lv~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 86 LVDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhhHhhCCCceEEEEecCCCCCCCeEE
Confidence 3455667876 788899999999863
No 313
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=81.55 E-value=0.65 Score=40.52 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=14.6
Q ss_pred hcCCCEEEEccCCCchhHHhHHHHHH
Q 013858 156 LSGRDLLGCAETGSGKTAAFTIPMIQ 181 (435)
Q Consensus 156 ~~~~~vii~~~TGsGKT~~~~~~~l~ 181 (435)
..|.-+.+.||+|+|||+. +-++.
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl--~~~L~ 48 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTV--ANKLL 48 (231)
T ss_dssp ECCCEEEEECSCC----CH--HHHHH
T ss_pred CCCCEEEEECCCCCCHHHH--HHHHH
Confidence 3677899999999999984 44444
No 314
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=81.50 E-value=0.61 Score=43.43 Aligned_cols=16 Identities=31% Similarity=0.202 Sum_probs=14.1
Q ss_pred CEEEEccCCCchhHHh
Q 013858 160 DLLGCAETGSGKTAAF 175 (435)
Q Consensus 160 ~vii~~~TGsGKT~~~ 175 (435)
.++|+||||||||+.+
T Consensus 9 lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCcCcHHHHH
Confidence 5899999999999854
No 315
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=81.30 E-value=0.72 Score=38.80 Aligned_cols=19 Identities=21% Similarity=0.246 Sum_probs=16.2
Q ss_pred cCCCEEEEccCCCchhHHh
Q 013858 157 SGRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~ 175 (435)
.+..++++|+.|||||+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQC 26 (196)
T ss_dssp TSCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5567999999999999843
No 316
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=81.26 E-value=2.6 Score=37.87 Aligned_cols=21 Identities=19% Similarity=0.161 Sum_probs=17.7
Q ss_pred HhcCCCEEEEccCCCchhHHh
Q 013858 155 ALSGRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 155 ~~~~~~vii~~~TGsGKT~~~ 175 (435)
+..|.-+++.|+.|+|||+.+
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~ 47 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLA 47 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHH
Confidence 447788999999999999854
No 317
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=81.23 E-value=1.8 Score=35.88 Aligned_cols=15 Identities=27% Similarity=0.045 Sum_probs=13.0
Q ss_pred CEEEEccCCCchhHH
Q 013858 160 DLLGCAETGSGKTAA 174 (435)
Q Consensus 160 ~vii~~~TGsGKT~~ 174 (435)
-+.++|+.|+|||+.
T Consensus 6 ~i~i~G~sGsGKTTl 20 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTL 20 (169)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999984
No 318
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=81.19 E-value=0.66 Score=39.47 Aligned_cols=17 Identities=24% Similarity=0.317 Sum_probs=14.7
Q ss_pred CCEEEEccCCCchhHHh
Q 013858 159 RDLLGCAETGSGKTAAF 175 (435)
Q Consensus 159 ~~vii~~~TGsGKT~~~ 175 (435)
..++++|+.|+|||+.+
T Consensus 19 ~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SCEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46999999999999843
No 319
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=80.98 E-value=1.2 Score=41.77 Aligned_cols=25 Identities=28% Similarity=0.517 Sum_probs=19.5
Q ss_pred HHHHHhcCCC--EEEEccCCCchhHHh
Q 013858 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (435)
Q Consensus 151 ~i~~~~~~~~--vii~~~TGsGKT~~~ 175 (435)
.+..++.|.+ ++.-|+||||||.+.
T Consensus 81 lv~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 81 LIDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceeEEeecCCCCCCCEEe
Confidence 3455668876 788999999999864
No 320
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=80.94 E-value=1.2 Score=41.39 Aligned_cols=26 Identities=23% Similarity=0.491 Sum_probs=21.0
Q ss_pred HHHHHHhcCCC--EEEEccCCCchhHHh
Q 013858 150 QAMPVALSGRD--LLGCAETGSGKTAAF 175 (435)
Q Consensus 150 ~~i~~~~~~~~--vii~~~TGsGKT~~~ 175 (435)
..+..++.|.| ++.-|+||||||.+.
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 35667788887 788999999999864
No 321
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=80.84 E-value=1.1 Score=42.13 Aligned_cols=25 Identities=28% Similarity=0.514 Sum_probs=19.5
Q ss_pred HHHHHhcCCC--EEEEccCCCchhHHh
Q 013858 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (435)
Q Consensus 151 ~i~~~~~~~~--vii~~~TGsGKT~~~ 175 (435)
.+..++.|.+ ++.-|+||||||.+.
T Consensus 93 lv~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 93 LVDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 3455678876 788899999999864
No 322
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=80.83 E-value=0.61 Score=39.13 Aligned_cols=18 Identities=17% Similarity=0.141 Sum_probs=15.0
Q ss_pred CCCEEEEccCCCchhHHh
Q 013858 158 GRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~ 175 (435)
+..++++|+.|+|||+..
T Consensus 5 ~~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLS 22 (193)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 446899999999999843
No 323
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=80.80 E-value=0.89 Score=39.95 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=18.1
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHH
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQ 181 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~ 181 (435)
.|.-+.+.||.|+|||+ ++-++.
T Consensus 30 ~Ge~~~iiG~nGsGKST--Ll~~l~ 52 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKST--MLNIIG 52 (235)
T ss_dssp TTCEEEEECSTTSSHHH--HHHHHT
T ss_pred CCCEEEEECCCCCcHHH--HHHHHh
Confidence 57779999999999998 444443
No 324
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=80.70 E-value=1.2 Score=41.85 Aligned_cols=25 Identities=24% Similarity=0.497 Sum_probs=19.5
Q ss_pred HHHHHhcCCC--EEEEccCCCchhHHh
Q 013858 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (435)
Q Consensus 151 ~i~~~~~~~~--vii~~~TGsGKT~~~ 175 (435)
.+..++.|.+ ++.-|+||||||.+.
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 72 TVDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCcceEEEECCCCCCcceEe
Confidence 3445668876 788999999999864
No 325
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=80.70 E-value=1.2 Score=41.95 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=19.5
Q ss_pred HHHHHhcCCC--EEEEccCCCchhHHh
Q 013858 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (435)
Q Consensus 151 ~i~~~~~~~~--vii~~~TGsGKT~~~ 175 (435)
.+..++.|.+ ++.-|+||||||.+.
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 76 IVTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceEEEeecCCCCCCceEE
Confidence 3455668876 788999999999864
No 326
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=80.64 E-value=1.2 Score=41.70 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=19.9
Q ss_pred HHHHHhcCCC--EEEEccCCCchhHHh
Q 013858 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (435)
Q Consensus 151 ~i~~~~~~~~--vii~~~TGsGKT~~~ 175 (435)
.+..++.|.+ ++.-|+||||||.+.
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHcCCccceeeecCCCCCCCeEE
Confidence 4556678876 788999999999864
No 327
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=80.63 E-value=0.81 Score=37.49 Aligned_cols=26 Identities=15% Similarity=0.133 Sum_probs=19.8
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHH
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQHCV 184 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~~~ 184 (435)
.|..+.+.||.|+|||+ ++-++..+.
T Consensus 32 ~Ge~v~L~G~nGaGKTT--Llr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTT--LTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHH--HHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHH--HHHHHHHhC
Confidence 56678999999999998 455555544
No 328
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=80.61 E-value=3.8 Score=44.49 Aligned_cols=57 Identities=16% Similarity=0.186 Sum_probs=49.2
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhC----CC----cEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcC
Q 013858 374 FPLTIVFVERKTRCDEVSEALVAE----GL----HAVALHGGRNQSDRESALRDFRNGSTNILVFSY 432 (435)
Q Consensus 374 ~~~~lVF~~~~~~~~~l~~~L~~~----~~----~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~ 432 (435)
+.++||.++++.-+.++++.++.. ++ .+..+||+.+..+|....+.+++ .+|+|+|+
T Consensus 99 ~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP 163 (1054)
T 1gku_B 99 GKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTT 163 (1054)
T ss_dssp SCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEH
T ss_pred CCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcH
Confidence 457999999999999999888753 56 89999999999888888888877 99999996
No 329
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=80.58 E-value=1.1 Score=42.72 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=19.4
Q ss_pred HHHHHhcCCC--EEEEccCCCchhHHh
Q 013858 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (435)
Q Consensus 151 ~i~~~~~~~~--vii~~~TGsGKT~~~ 175 (435)
.+..++.|.+ ++.-|+||||||.+.
T Consensus 146 lV~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 146 LVQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHHHhcCCceeEEeecCCCCCCCeEe
Confidence 3455668876 788899999999864
No 330
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=80.55 E-value=1.2 Score=41.95 Aligned_cols=25 Identities=24% Similarity=0.534 Sum_probs=19.7
Q ss_pred HHHHHhcCCC--EEEEccCCCchhHHh
Q 013858 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (435)
Q Consensus 151 ~i~~~~~~~~--vii~~~TGsGKT~~~ 175 (435)
.+..++.|.+ ++.-|+||||||.+.
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 4556678886 788999999999754
No 331
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=80.48 E-value=1.3 Score=37.89 Aligned_cols=29 Identities=14% Similarity=0.055 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhcCCCEEEEccCCCchhHHh
Q 013858 146 SIQAQAMPVALSGRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 146 ~~Q~~~i~~~~~~~~vii~~~TGsGKT~~~ 175 (435)
..++.. ..+..|..++++|+.|+|||+.+
T Consensus 14 ~~~r~~-~~~~~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 14 RSERTE-LRNQRGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp HHHHHH-HHTSSCEEEEEECSTTSSHHHHH
T ss_pred HHHhhc-ccCCCCCEEEEECCCCCCHHHHH
Confidence 344444 33446677999999999999843
No 332
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=80.39 E-value=1.2 Score=41.76 Aligned_cols=26 Identities=31% Similarity=0.555 Sum_probs=20.1
Q ss_pred HHHHHHhcCCC--EEEEccCCCchhHHh
Q 013858 150 QAMPVALSGRD--LLGCAETGSGKTAAF 175 (435)
Q Consensus 150 ~~i~~~~~~~~--vii~~~TGsGKT~~~ 175 (435)
..+..++.|.+ ++.-|+||||||.+.
T Consensus 94 ~lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 94 DVVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHhCCCceEEEEECCCCCCCceEe
Confidence 34556678887 777899999999863
No 333
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=80.34 E-value=1.8 Score=40.57 Aligned_cols=38 Identities=24% Similarity=0.305 Sum_probs=24.8
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcc
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAP 202 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P 202 (435)
.|+-+++.|+.|+|||+.+ +.+....... +..++++.-
T Consensus 60 ~G~iv~I~G~pGsGKTtLa-l~la~~~~~~-------g~~vlyi~~ 97 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVA-LHAVANAQAA-------GGIAAFIDA 97 (349)
T ss_dssp TTSEEEEEESTTSSHHHHH-HHHHHHHHHT-------TCCEEEEES
T ss_pred CCeEEEEECCCCCCHHHHH-HHHHHHHHhC-------CCeEEEEEC
Confidence 4567999999999999754 3333333332 455777763
No 334
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=80.27 E-value=1.1 Score=41.83 Aligned_cols=25 Identities=32% Similarity=0.566 Sum_probs=20.9
Q ss_pred HHHHHhcCCC--EEEEccCCCchhHHh
Q 013858 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (435)
Q Consensus 151 ~i~~~~~~~~--vii~~~TGsGKT~~~ 175 (435)
.+..++.|.| ++.-|+||||||.+.
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 6677788987 778899999999864
No 335
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=80.22 E-value=1.3 Score=41.45 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=19.3
Q ss_pred HHHHHhcCCC--EEEEccCCCchhHHh
Q 013858 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (435)
Q Consensus 151 ~i~~~~~~~~--vii~~~TGsGKT~~~ 175 (435)
.+..++.|.| ++.-|+||||||.+.
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhhcCeeEEEecccCCCceEee
Confidence 3455668876 788899999999863
No 336
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=80.21 E-value=1.2 Score=41.70 Aligned_cols=25 Identities=32% Similarity=0.533 Sum_probs=19.6
Q ss_pred HHHHHhcCCC--EEEEccCCCchhHHh
Q 013858 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (435)
Q Consensus 151 ~i~~~~~~~~--vii~~~TGsGKT~~~ 175 (435)
.+..++.|.+ ++.-|+||||||.+.
T Consensus 97 lv~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 97 ILRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEeCCCCCCceeee
Confidence 4455668876 788899999999864
No 337
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=80.17 E-value=0.71 Score=38.74 Aligned_cols=16 Identities=19% Similarity=0.318 Sum_probs=13.7
Q ss_pred CCEEEEccCCCchhHH
Q 013858 159 RDLLGCAETGSGKTAA 174 (435)
Q Consensus 159 ~~vii~~~TGsGKT~~ 174 (435)
..++++|++|+|||+.
T Consensus 3 ~ii~l~G~~GaGKSTl 18 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTT 18 (189)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred eEEEEECCCCCcHHHH
Confidence 3578999999999984
No 338
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=80.16 E-value=1.5 Score=32.54 Aligned_cols=37 Identities=22% Similarity=0.328 Sum_probs=32.6
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCC
Q 013858 373 PFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRN 409 (435)
Q Consensus 373 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~ 409 (435)
+..+++|||.+-..+...+..|+..|+++..+.||+.
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 3456999999999999999999999999999999864
No 339
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=80.12 E-value=1.3 Score=41.63 Aligned_cols=25 Identities=28% Similarity=0.549 Sum_probs=19.8
Q ss_pred HHHHHhcCCC--EEEEccCCCchhHHh
Q 013858 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (435)
Q Consensus 151 ~i~~~~~~~~--vii~~~TGsGKT~~~ 175 (435)
.+..++.|.| ++.-|+||||||.+.
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 4556678887 778899999999864
No 340
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=80.10 E-value=1.3 Score=42.27 Aligned_cols=25 Identities=32% Similarity=0.565 Sum_probs=20.7
Q ss_pred HHHHHhcCCC--EEEEccCCCchhHHh
Q 013858 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (435)
Q Consensus 151 ~i~~~~~~~~--vii~~~TGsGKT~~~ 175 (435)
.+..++.|.| ++.-|+||||||.+.
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 5677778887 778899999999864
No 341
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=80.09 E-value=0.83 Score=43.19 Aligned_cols=18 Identities=39% Similarity=0.401 Sum_probs=15.5
Q ss_pred CCCEEEEccCCCchhHHh
Q 013858 158 GRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~ 175 (435)
..++++.||+|+|||+.+
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 457999999999999854
No 342
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=80.08 E-value=0.66 Score=38.93 Aligned_cols=18 Identities=17% Similarity=0.152 Sum_probs=15.0
Q ss_pred CCCEEEEccCCCchhHHh
Q 013858 158 GRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~ 175 (435)
+..++++|++|||||+.+
T Consensus 3 ~~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 345899999999999854
No 343
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=80.08 E-value=1.6 Score=39.57 Aligned_cols=19 Identities=21% Similarity=0.405 Sum_probs=16.3
Q ss_pred cCCCEEEEccCCCchhHHh
Q 013858 157 SGRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~ 175 (435)
.|.-+++.|++|+|||+..
T Consensus 34 ~G~~~~i~G~~G~GKTTl~ 52 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFV 52 (296)
T ss_dssp TTCEEEEEESTTSSHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHH
Confidence 5777999999999999743
No 344
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=79.93 E-value=0.86 Score=37.70 Aligned_cols=17 Identities=24% Similarity=0.323 Sum_probs=14.6
Q ss_pred CCEEEEccCCCchhHHh
Q 013858 159 RDLLGCAETGSGKTAAF 175 (435)
Q Consensus 159 ~~vii~~~TGsGKT~~~ 175 (435)
+.++++|+.|||||+.+
T Consensus 5 ~~i~i~G~~GsGKsTla 21 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLA 21 (175)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 36899999999999854
No 345
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=79.83 E-value=0.79 Score=39.86 Aligned_cols=19 Identities=21% Similarity=0.074 Sum_probs=15.3
Q ss_pred cCCCEEEEccCCCchhHHh
Q 013858 157 SGRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~ 175 (435)
.+..++++|++|||||+..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp -CCEEEEEECTTSSHHHHH
T ss_pred cCcEEEEECCCCCCHHHHH
Confidence 3456999999999999843
No 346
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=79.82 E-value=1.2 Score=41.91 Aligned_cols=25 Identities=24% Similarity=0.504 Sum_probs=19.7
Q ss_pred HHHHHhcCCC--EEEEccCCCchhHHh
Q 013858 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (435)
Q Consensus 151 ~i~~~~~~~~--vii~~~TGsGKT~~~ 175 (435)
.+..++.|.+ ++.-|+||||||.+.
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceEE
Confidence 4455678886 788999999999854
No 347
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=79.81 E-value=0.89 Score=37.26 Aligned_cols=18 Identities=28% Similarity=0.231 Sum_probs=15.1
Q ss_pred CCCEEEEccCCCchhHHh
Q 013858 158 GRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~ 175 (435)
-+++++.|..|||||++.
T Consensus 7 ~~~i~l~G~~GsGKSTva 24 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLA 24 (168)
T ss_dssp -CEEEEESCTTSSHHHHH
T ss_pred cceEEEECCCCCCHHHHH
Confidence 367999999999999854
No 348
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=79.75 E-value=2.6 Score=39.29 Aligned_cols=65 Identities=11% Similarity=0.059 Sum_probs=33.6
Q ss_pred HHHHHhc-----CCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEccChhh-HHHHHHHHHHH
Q 013858 151 AMPVALS-----GRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAPTREL-AQQIEKEVKAL 217 (435)
Q Consensus 151 ~i~~~~~-----~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P~r~l-a~q~~~~~~~~ 217 (435)
.+..++. |.-+++.|++|+|||+.+ +-+...... .....+.+..++++.--..+ ..++...+..+
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla-~~la~~~~~-~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~ 180 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLS-HTLCVTAQL-PGAGGYPGGKIIFIDTENTFRPDRLRDIADRF 180 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHH-HHHHHHTTS-CBTTTBCCCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHH-HHHHHHHhc-ccccCCCCCeEEEEECCCCCCHHHHHHHHHHc
Confidence 3555553 456899999999999743 222222111 11111124568887644321 33444444443
No 349
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=79.61 E-value=1.2 Score=37.71 Aligned_cols=18 Identities=28% Similarity=0.182 Sum_probs=15.6
Q ss_pred cCCCEEEEccCCCchhHH
Q 013858 157 SGRDLLGCAETGSGKTAA 174 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~ 174 (435)
.+..++++|+.|||||+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~ 20 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQ 20 (204)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCcEEEEEcCCCCCHHHH
Confidence 456799999999999984
No 350
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=79.48 E-value=1.7 Score=40.20 Aligned_cols=18 Identities=22% Similarity=0.292 Sum_probs=14.6
Q ss_pred CCCEEEEccCCCchhHHh
Q 013858 158 GRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~ 175 (435)
++.+.++|++|+|||+..
T Consensus 105 ~~vI~ivG~~G~GKTT~~ 122 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSL 122 (320)
T ss_dssp CEEEEEESSTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345889999999999854
No 351
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=79.46 E-value=5.7 Score=36.14 Aligned_cols=75 Identities=19% Similarity=0.271 Sum_probs=53.3
Q ss_pred CCeEEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHH----hCCCcEEEECcHHHHHHHHcCCCCCCC
Q 013858 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSR 269 (435)
Q Consensus 194 ~~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~T~~~l~~~l~~~~~~l~~ 269 (435)
+.++||.++++.-+..+.+.+... ++.+..++|+....++...+ .+..+|+|+|. .+ ...+++..
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~-----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~-----va-~~Gidi~~ 96 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRL-----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD-----VA-ARGLDIPQ 96 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT-----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS-----TT-TCSTTCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC-----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec-----hh-hcCccccc
Confidence 467999999998887776666543 57889999987765544333 35678999994 22 34677888
Q ss_pred ceEEEEecCC
Q 013858 270 VSFVILDEAD 279 (435)
Q Consensus 270 ~~~iIiDEah 279 (435)
+++||.=+.+
T Consensus 97 v~~VI~~d~p 106 (300)
T 3i32_A 97 VDLVVHYRMP 106 (300)
T ss_dssp CSEEEESSCC
T ss_pred eeEEEEcCCC
Confidence 9988854443
No 352
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=79.46 E-value=1.2 Score=41.68 Aligned_cols=25 Identities=32% Similarity=0.565 Sum_probs=20.4
Q ss_pred HHHHHhcCCC--EEEEccCCCchhHHh
Q 013858 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (435)
Q Consensus 151 ~i~~~~~~~~--vii~~~TGsGKT~~~ 175 (435)
.+..++.|.+ ++.-|+||||||.+.
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEec
Confidence 5666778887 788899999999864
No 353
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=79.45 E-value=0.54 Score=42.02 Aligned_cols=18 Identities=28% Similarity=0.342 Sum_probs=15.2
Q ss_pred CCCEEEEccCCCchhHHh
Q 013858 158 GRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~ 175 (435)
.+.+++.||+|+|||+.+
T Consensus 44 ~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CSCCCCBCSSCSSHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 456999999999999854
No 354
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=79.44 E-value=2 Score=40.31 Aligned_cols=38 Identities=21% Similarity=0.233 Sum_probs=25.5
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEcc
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLAP 202 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~P 202 (435)
.|+.+++.|+.|+|||+.+ +.+....... +..++++.-
T Consensus 62 ~G~ii~I~G~pGsGKTtLa-l~la~~~~~~-------g~~vlyid~ 99 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLT-LQVIAAAQRE-------GKTCAFIDA 99 (356)
T ss_dssp TTSEEEEECSTTSSHHHHH-HHHHHHHHHT-------TCCEEEEES
T ss_pred CCeEEEEECCCCCCHHHHH-HHHHHHHHHC-------CCeEEEEeC
Confidence 4567999999999999754 3344333332 345777764
No 355
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=79.41 E-value=1.1 Score=39.56 Aligned_cols=53 Identities=15% Similarity=0.089 Sum_probs=28.2
Q ss_pred CCCCcccCCCCHHHHHHHHHCCCCCCcHHHHHHHHHHh--cCCCEEEEccCCCchhHH
Q 013858 119 PIESFTDMCLHPSIMKDIEFHEYTRPTSIQAQAMPVAL--SGRDLLGCAETGSGKTAA 174 (435)
Q Consensus 119 ~~~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~~~--~~~~vii~~~TGsGKT~~ 174 (435)
|-.+|+++.-.+.....++..... . -....+..+- -.+.+++.||+|+|||+.
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~l~~~--~-~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl 65 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKEIVEF--L-KNPSRFHEMGARIPKGVLLVGPPGVGKTHL 65 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHHHHHH--H-HCHHHHHHTTCCCCSEEEEECCTTSSHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHH--H-HCHHHHHHcCCCCCCeEEEECCCCCCHHHH
Confidence 344677776555555555432110 0 0011222211 123499999999999984
No 356
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=79.36 E-value=1.5 Score=41.09 Aligned_cols=24 Identities=29% Similarity=0.194 Sum_probs=18.2
Q ss_pred HHHHHh-----cCCCEEEEccCCCchhHH
Q 013858 151 AMPVAL-----SGRDLLGCAETGSGKTAA 174 (435)
Q Consensus 151 ~i~~~~-----~~~~vii~~~TGsGKT~~ 174 (435)
.+..++ .|.-+.+.||.|+|||+.
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL 147 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQL 147 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHH
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHH
Confidence 345555 345699999999999984
No 357
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=79.30 E-value=0.98 Score=37.63 Aligned_cols=17 Identities=24% Similarity=0.165 Sum_probs=14.6
Q ss_pred CCEEEEccCCCchhHHh
Q 013858 159 RDLLGCAETGSGKTAAF 175 (435)
Q Consensus 159 ~~vii~~~TGsGKT~~~ 175 (435)
..++++|+.|||||+.+
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIG 19 (184)
T ss_dssp CSEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45899999999999854
No 358
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=79.25 E-value=1.8 Score=36.75 Aligned_cols=17 Identities=29% Similarity=-0.064 Sum_probs=14.3
Q ss_pred CCEEEEccCCCchhHHh
Q 013858 159 RDLLGCAETGSGKTAAF 175 (435)
Q Consensus 159 ~~vii~~~TGsGKT~~~ 175 (435)
.-+.++|+.|||||+.+
T Consensus 23 ~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45889999999999843
No 359
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=79.24 E-value=2.1 Score=31.27 Aligned_cols=35 Identities=26% Similarity=0.321 Sum_probs=31.6
Q ss_pred CcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCC
Q 013858 375 PLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRN 409 (435)
Q Consensus 375 ~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~ 409 (435)
.+++|||.+-..+...+..|+..|+.+..+.||+.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 67999999998999999999999999888999875
No 360
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=79.24 E-value=1.2 Score=41.96 Aligned_cols=25 Identities=28% Similarity=0.550 Sum_probs=19.4
Q ss_pred HHHHHhcCCC--EEEEccCCCchhHHh
Q 013858 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (435)
Q Consensus 151 ~i~~~~~~~~--vii~~~TGsGKT~~~ 175 (435)
.+..++.|.+ ++.-|+||||||.+.
T Consensus 92 lv~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 92 LIEEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCceEEEEeecCCCCCcceec
Confidence 3445667876 788999999999853
No 361
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=79.16 E-value=1.4 Score=32.92 Aligned_cols=37 Identities=27% Similarity=0.381 Sum_probs=32.3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCC
Q 013858 373 PFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRN 409 (435)
Q Consensus 373 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~ 409 (435)
+..+++|||.+-..+...+..|+..|+++..+.||+.
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHH
Confidence 3456999999988999999999999999999999864
No 362
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=79.02 E-value=0.82 Score=41.55 Aligned_cols=17 Identities=35% Similarity=0.378 Sum_probs=14.4
Q ss_pred CCEEEEccCCCchhHHh
Q 013858 159 RDLLGCAETGSGKTAAF 175 (435)
Q Consensus 159 ~~vii~~~TGsGKT~~~ 175 (435)
.-++++|++|+|||+.+
T Consensus 34 ~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp EEEEEECCTTSCTHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35899999999999843
No 363
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=78.94 E-value=0.91 Score=39.95 Aligned_cols=24 Identities=17% Similarity=0.313 Sum_probs=18.7
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHH
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQH 182 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~ 182 (435)
.|.-+.+.||.|+|||+ ++-++.-
T Consensus 30 ~Ge~~~i~G~nGsGKST--Ll~~l~G 53 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSS--LLSALLA 53 (237)
T ss_dssp TTCEEEEECSTTSSHHH--HHHHHTT
T ss_pred CCCEEEEECCCCCCHHH--HHHHHhc
Confidence 57789999999999998 4444443
No 364
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=78.87 E-value=1.3 Score=41.89 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=19.6
Q ss_pred HHHHHhcCCC--EEEEccCCCchhHHh
Q 013858 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (435)
Q Consensus 151 ~i~~~~~~~~--vii~~~TGsGKT~~~ 175 (435)
.+..++.|.+ ++.-|+||||||.+.
T Consensus 126 lv~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHHHhcCCceEEEEecCCCCCCCeEe
Confidence 3455668876 788899999999864
No 365
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=78.84 E-value=1.5 Score=42.07 Aligned_cols=26 Identities=35% Similarity=0.570 Sum_probs=21.2
Q ss_pred HHHHHHhcCCC--EEEEccCCCchhHHh
Q 013858 150 QAMPVALSGRD--LLGCAETGSGKTAAF 175 (435)
Q Consensus 150 ~~i~~~~~~~~--vii~~~TGsGKT~~~ 175 (435)
..+..++.|.+ ++.-|+||||||.+.
T Consensus 129 plv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 129 PLIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 46677788887 788899999999864
No 366
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=78.77 E-value=2.1 Score=36.73 Aligned_cols=55 Identities=16% Similarity=0.258 Sum_probs=36.3
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcC
Q 013858 373 PFPLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVFSY 432 (435)
Q Consensus 373 ~~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~ 432 (435)
...++||.++++.-+.++++.++.. ++.+..++|+....++...+ . ..+|+|+|.
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~--~~~iiv~Tp 139 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL---R--DAQIVVGTP 139 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------C---T--TCSEEEECH
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcC---C--CCCEEEECH
Confidence 3457999999999999999888753 67899999998765443322 2 378999984
No 367
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=78.70 E-value=1.2 Score=41.98 Aligned_cols=25 Identities=32% Similarity=0.545 Sum_probs=20.3
Q ss_pred HHHHHhcCCC--EEEEccCCCchhHHh
Q 013858 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (435)
Q Consensus 151 ~i~~~~~~~~--vii~~~TGsGKT~~~ 175 (435)
.+..++.|.+ ++.-|+||||||.+.
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 5666778887 778899999999864
No 368
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=78.66 E-value=1.2 Score=41.90 Aligned_cols=22 Identities=18% Similarity=0.217 Sum_probs=16.3
Q ss_pred CEEEEccCCCchhHHhHHHHHHHH
Q 013858 160 DLLGCAETGSGKTAAFTIPMIQHC 183 (435)
Q Consensus 160 ~vii~~~TGsGKT~~~~~~~l~~~ 183 (435)
-.+|+||+|+|||+. +-++.+.
T Consensus 25 ~~~i~G~NGaGKTTl--l~ai~~a 46 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSL--FEAISFA 46 (365)
T ss_dssp EEEEECCTTSSHHHH--HHHHHHH
T ss_pred eEEEECCCCCCHHHH--HHHHHHH
Confidence 477999999999985 4444443
No 369
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=78.52 E-value=0.97 Score=39.02 Aligned_cols=18 Identities=17% Similarity=0.213 Sum_probs=15.2
Q ss_pred CCCEEEEccCCCchhHHh
Q 013858 158 GRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~ 175 (435)
+..+++.|+.|||||+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a 21 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQA 21 (220)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456899999999999843
No 370
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=78.52 E-value=3.7 Score=35.73 Aligned_cols=57 Identities=16% Similarity=0.271 Sum_probs=37.2
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcC
Q 013858 373 PFPLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVFSY 432 (435)
Q Consensus 373 ~~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~ 432 (435)
.+.++||.++++.-+.++++.++.. +..+..++|+..... ....+..+..+|+|+|.
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp 157 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTP 157 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECH
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECH
Confidence 3457999999999999999988764 567888888876433 23455667789999994
No 371
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=78.50 E-value=1.4 Score=36.72 Aligned_cols=16 Identities=19% Similarity=0.175 Sum_probs=13.7
Q ss_pred CEEEEccCCCchhHHh
Q 013858 160 DLLGCAETGSGKTAAF 175 (435)
Q Consensus 160 ~vii~~~TGsGKT~~~ 175 (435)
.++++|+.|+|||+..
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999843
No 372
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=78.48 E-value=1.4 Score=37.56 Aligned_cols=24 Identities=25% Similarity=0.192 Sum_probs=18.3
Q ss_pred CEEEEccCCCchhHHhHHHHHHHHHh
Q 013858 160 DLLGCAETGSGKTAAFTIPMIQHCVA 185 (435)
Q Consensus 160 ~vii~~~TGsGKT~~~~~~~l~~~~~ 185 (435)
-.+|.|++|+|||+. +-++.+++.
T Consensus 25 ~~~I~G~NgsGKSti--l~ai~~~l~ 48 (203)
T 3qks_A 25 INLIIGQNGSGKSSL--LDAILVGLY 48 (203)
T ss_dssp EEEEECCTTSSHHHH--HHHHHHHHH
T ss_pred eEEEEcCCCCCHHHH--HHHHHHHhc
Confidence 478999999999984 555665555
No 373
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=78.43 E-value=0.86 Score=41.52 Aligned_cols=17 Identities=24% Similarity=0.055 Sum_probs=14.3
Q ss_pred CCEEEEccCCCchhHHh
Q 013858 159 RDLLGCAETGSGKTAAF 175 (435)
Q Consensus 159 ~~vii~~~TGsGKT~~~ 175 (435)
+.+++.||+|+|||+.+
T Consensus 37 ~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQC 53 (293)
T ss_dssp SEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45889999999999843
No 374
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=78.42 E-value=1.3 Score=36.73 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=18.2
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHH
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQHC 183 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~~ 183 (435)
.|..++++|+.|||||+. .-++...
T Consensus 4 ~g~~i~l~G~~GsGKST~--~~~L~~~ 28 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTV--SMALEEY 28 (179)
T ss_dssp CCEEEEEECCTTSSHHHH--HHHHHHH
T ss_pred CCcEEEEECCCCCCHHHH--HHHHHHH
Confidence 355689999999999984 3444443
No 375
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=78.42 E-value=6.2 Score=41.36 Aligned_cols=55 Identities=7% Similarity=0.130 Sum_probs=39.9
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcC
Q 013858 374 FPLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVFSY 432 (435)
Q Consensus 374 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~ 432 (435)
++++||.|+++.-+.+.++.++.. ++.+..+||+.+...+...+. +..+|+|+|.
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp 354 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTP 354 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEch
Confidence 678999999999999988888765 899999999997655433222 3578999984
No 376
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=78.41 E-value=0.89 Score=43.32 Aligned_cols=16 Identities=25% Similarity=0.279 Sum_probs=13.7
Q ss_pred CEEEEccCCCchhHHh
Q 013858 160 DLLGCAETGSGKTAAF 175 (435)
Q Consensus 160 ~vii~~~TGsGKT~~~ 175 (435)
-++|+||||+|||+.+
T Consensus 4 ~i~i~GptgsGKttla 19 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLS 19 (409)
T ss_dssp EEEEEECSSSSHHHHH
T ss_pred EEEEECcchhhHHHHH
Confidence 3789999999999854
No 377
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=78.34 E-value=1 Score=36.94 Aligned_cols=17 Identities=18% Similarity=0.221 Sum_probs=14.5
Q ss_pred CCEEEEccCCCchhHHh
Q 013858 159 RDLLGCAETGSGKTAAF 175 (435)
Q Consensus 159 ~~vii~~~TGsGKT~~~ 175 (435)
+.++++|+.|||||++.
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVG 19 (173)
T ss_dssp CCEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45899999999999854
No 378
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=78.33 E-value=1.4 Score=40.86 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=17.3
Q ss_pred CCEEEEccCCCchhHHhHHHHHHHH
Q 013858 159 RDLLGCAETGSGKTAAFTIPMIQHC 183 (435)
Q Consensus 159 ~~vii~~~TGsGKT~~~~~~~l~~~ 183 (435)
..+++.||+|+|||+. +-++...
T Consensus 52 ~~~ll~Gp~G~GKTTL--a~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTL--AHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHH--HHHHHHH
T ss_pred CeEEEECCCCCcHHHH--HHHHHHH
Confidence 5799999999999984 3344443
No 379
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=78.28 E-value=2.7 Score=32.71 Aligned_cols=37 Identities=16% Similarity=0.324 Sum_probs=31.9
Q ss_pred CcEEEEe-CchHHHHHHHHHHHhCCCcEEEecCCCCHH
Q 013858 375 PLTIVFV-ERKTRCDEVSEALVAEGLHAVALHGGRNQS 411 (435)
Q Consensus 375 ~~~lVF~-~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~ 411 (435)
.+++||| .+-..+..++..|+..|++|..+.||+..-
T Consensus 90 ~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~W 127 (134)
T 3g5j_A 90 DNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKAY 127 (134)
T ss_dssp SEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHHH
T ss_pred CeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHHH
Confidence 4699999 577788899999999999999999997643
No 380
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=78.26 E-value=1 Score=41.04 Aligned_cols=16 Identities=38% Similarity=0.349 Sum_probs=14.3
Q ss_pred CEEEEccCCCchhHHh
Q 013858 160 DLLGCAETGSGKTAAF 175 (435)
Q Consensus 160 ~vii~~~TGsGKT~~~ 175 (435)
.+++.||+|+|||+.+
T Consensus 49 ~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEESCSSSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 6999999999999854
No 381
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=78.17 E-value=1.4 Score=37.24 Aligned_cols=21 Identities=19% Similarity=0.276 Sum_probs=15.8
Q ss_pred CEEEEccCCCchhHHhHHHHHHH
Q 013858 160 DLLGCAETGSGKTAAFTIPMIQH 182 (435)
Q Consensus 160 ~vii~~~TGsGKT~~~~~~~l~~ 182 (435)
.+++.|+.|||||+. .-.+..
T Consensus 2 ~I~i~G~~GsGKsT~--~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTI--SAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHH--HHHHHH
T ss_pred EEEEECCCccCHHHH--HHHHHH
Confidence 478999999999984 344444
No 382
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=78.15 E-value=1.1 Score=38.78 Aligned_cols=18 Identities=17% Similarity=0.159 Sum_probs=15.2
Q ss_pred CCCEEEEccCCCchhHHh
Q 013858 158 GRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~ 175 (435)
...+++.|+.|||||+..
T Consensus 5 ~~~I~l~G~~GsGKsT~~ 22 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQC 22 (222)
T ss_dssp SCCEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 356999999999999843
No 383
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=78.04 E-value=2.4 Score=36.86 Aligned_cols=28 Identities=29% Similarity=0.376 Sum_probs=19.2
Q ss_pred cCC-CEEEEccCCCchhHHhHHHHHHHHHh
Q 013858 157 SGR-DLLGCAETGSGKTAAFTIPMIQHCVA 185 (435)
Q Consensus 157 ~~~-~vii~~~TGsGKT~~~~~~~l~~~~~ 185 (435)
.|+ ++++.++.|+|||+.+ +.+...+..
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a-~~la~~l~~ 32 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAM-LQAAHAQLR 32 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHH-HHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHH-HHHHHHHHH
Confidence 344 5999999999999875 333334333
No 384
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=77.98 E-value=1.6 Score=42.26 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=19.7
Q ss_pred HHHHHhcCCC--EEEEccCCCchhHHh
Q 013858 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (435)
Q Consensus 151 ~i~~~~~~~~--vii~~~TGsGKT~~~ 175 (435)
.+..++.|.| ++.-|+||||||.+.
T Consensus 128 lv~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 128 FLDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 4455678886 788899999999864
No 385
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=77.91 E-value=0.96 Score=38.83 Aligned_cols=16 Identities=19% Similarity=0.289 Sum_probs=13.7
Q ss_pred CEEEEccCCCchhHHh
Q 013858 160 DLLGCAETGSGKTAAF 175 (435)
Q Consensus 160 ~vii~~~TGsGKT~~~ 175 (435)
.++++|+.|||||+.+
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQA 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999854
No 386
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=77.68 E-value=1.4 Score=41.72 Aligned_cols=21 Identities=24% Similarity=0.262 Sum_probs=16.6
Q ss_pred CEEEEccCCCchhHHhHHHHHHH
Q 013858 160 DLLGCAETGSGKTAAFTIPMIQH 182 (435)
Q Consensus 160 ~vii~~~TGsGKT~~~~~~~l~~ 182 (435)
-.+|+|+||+|||.. +-++.+
T Consensus 27 l~vi~G~NGaGKT~i--leAI~~ 47 (371)
T 3auy_A 27 IVAIIGENGSGKSSI--FEAVFF 47 (371)
T ss_dssp EEEEEECTTSSHHHH--HHHHHH
T ss_pred eEEEECCCCCCHHHH--HHHHHH
Confidence 478999999999984 555555
No 387
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=77.63 E-value=1.4 Score=37.98 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=18.2
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHH
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQ 181 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~ 181 (435)
.|.-+.+.||.|+|||+ ++-++.
T Consensus 34 ~Ge~~~iiG~NGsGKST--Llk~l~ 56 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTT--LLKTIS 56 (214)
T ss_dssp TTCCEEEECCTTSSHHH--HHHHHT
T ss_pred CCCEEEEECCCCCCHHH--HHHHHh
Confidence 67789999999999998 444443
No 388
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=77.43 E-value=4.3 Score=40.09 Aligned_cols=55 Identities=9% Similarity=0.196 Sum_probs=42.1
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcC
Q 013858 374 FPLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVFSY 432 (435)
Q Consensus 374 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~ 432 (435)
++++||.|+++.-+.+.++.++.. ++.+..+||+.+...+...+. +..+|+|+|.
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~ 110 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTP 110 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECH
Confidence 667999999999888888888765 899999999997554432221 2478999984
No 389
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=77.39 E-value=1 Score=37.67 Aligned_cols=16 Identities=25% Similarity=0.272 Sum_probs=14.0
Q ss_pred CEEEEccCCCchhHHh
Q 013858 160 DLLGCAETGSGKTAAF 175 (435)
Q Consensus 160 ~vii~~~TGsGKT~~~ 175 (435)
.++++|+.|||||+..
T Consensus 8 ~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999853
No 390
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=77.30 E-value=1.1 Score=37.95 Aligned_cols=17 Identities=24% Similarity=0.247 Sum_probs=14.5
Q ss_pred CCEEEEccCCCchhHHh
Q 013858 159 RDLLGCAETGSGKTAAF 175 (435)
Q Consensus 159 ~~vii~~~TGsGKT~~~ 175 (435)
..++++|+.|||||+.+
T Consensus 21 ~~I~l~G~~GsGKST~a 37 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQA 37 (201)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45899999999999853
No 391
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=77.25 E-value=0.98 Score=44.04 Aligned_cols=18 Identities=44% Similarity=0.599 Sum_probs=15.5
Q ss_pred CCCEEEEccCCCchhHHh
Q 013858 158 GRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~ 175 (435)
++++++.||+|+|||+.+
T Consensus 63 ~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp TCEEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCcCCHHHHH
Confidence 357999999999999854
No 392
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=77.25 E-value=1.4 Score=41.67 Aligned_cols=23 Identities=35% Similarity=0.582 Sum_probs=18.3
Q ss_pred HHHhcCCC--EEEEccCCCchhHHh
Q 013858 153 PVALSGRD--LLGCAETGSGKTAAF 175 (435)
Q Consensus 153 ~~~~~~~~--vii~~~TGsGKT~~~ 175 (435)
..++.|.+ ++.-|+||||||.+.
T Consensus 92 ~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 92 RHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HHhhcCceeeEeeecCCCCCCCeEe
Confidence 44667876 778899999999864
No 393
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=77.19 E-value=9.2 Score=35.95 Aligned_cols=74 Identities=19% Similarity=0.249 Sum_probs=54.8
Q ss_pred CCeEEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHH----hCCCcEEEECcHHHHHHHHcCCCCCCC
Q 013858 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSR 269 (435)
Q Consensus 194 ~~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~T~~~l~~~l~~~~~~l~~ 269 (435)
+.++||.++++.-+..+++.+.+. ++.+..++|+....+....+ .+..+|+|+|. .+ ...+++..
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gidip~ 334 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE-----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VC-ARGIDVEQ 334 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GG-TSSCCCTT
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC-----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC-----cc-ccCCCccC
Confidence 468999999999988888777664 56788889988766554333 35678999995 22 34678889
Q ss_pred ceEEEEecC
Q 013858 270 VSFVILDEA 278 (435)
Q Consensus 270 ~~~iIiDEa 278 (435)
+++||.-..
T Consensus 335 ~~~Vi~~~~ 343 (412)
T 3fht_A 335 VSVVINFDL 343 (412)
T ss_dssp EEEEEESSC
T ss_pred CCEEEEECC
Confidence 999885443
No 394
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=77.15 E-value=1.6 Score=37.68 Aligned_cols=17 Identities=18% Similarity=0.130 Sum_probs=14.5
Q ss_pred CCEEEEccCCCchhHHh
Q 013858 159 RDLLGCAETGSGKTAAF 175 (435)
Q Consensus 159 ~~vii~~~TGsGKT~~~ 175 (435)
..+.+.|++|||||+.+
T Consensus 6 ~~i~i~G~~GsGKSTl~ 22 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLC 22 (227)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46899999999999843
No 395
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=77.07 E-value=0.9 Score=37.71 Aligned_cols=18 Identities=22% Similarity=0.089 Sum_probs=11.3
Q ss_pred CCCEEEEccCCCchhHHh
Q 013858 158 GRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~ 175 (435)
+..++++|+.|||||+.+
T Consensus 5 ~~~I~l~G~~GsGKST~a 22 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTA 22 (183)
T ss_dssp CCEEEEECCC----CHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456899999999999854
No 396
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=77.01 E-value=1.3 Score=39.91 Aligned_cols=24 Identities=17% Similarity=0.151 Sum_probs=18.6
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHH
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQH 182 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~ 182 (435)
.|.-+.+.||.|+|||+ ++-++.-
T Consensus 33 ~Ge~~~iiGpnGsGKST--Ll~~l~G 56 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKST--LFQNFNG 56 (275)
T ss_dssp TTSEEEEECCTTSSHHH--HHHHHTT
T ss_pred CCCEEEEECCCCCCHHH--HHHHHHc
Confidence 57779999999999998 4444443
No 397
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=76.98 E-value=1.3 Score=41.07 Aligned_cols=18 Identities=28% Similarity=0.405 Sum_probs=15.3
Q ss_pred CCCEEEEccCCCchhHHh
Q 013858 158 GRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~ 175 (435)
..++++.||+|+|||+.+
T Consensus 45 ~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GCCEEEECCGGGCTTHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 456999999999999843
No 398
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=76.97 E-value=5.8 Score=39.18 Aligned_cols=55 Identities=7% Similarity=0.130 Sum_probs=39.2
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcC
Q 013858 374 FPLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVFSY 432 (435)
Q Consensus 374 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~ 432 (435)
++++||.|+++.-+.+.++.++.. ++.+..+||+.+...+...+. ...+|+|+|.
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~ 113 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTP 113 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECH
Confidence 667999999999999888888765 899999999997655433222 2378999985
No 399
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=76.93 E-value=1.8 Score=36.88 Aligned_cols=24 Identities=17% Similarity=0.182 Sum_probs=18.1
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHH
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQH 182 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~ 182 (435)
.+.-++++|+.|||||+.. -.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~--~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQS--KLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHH--HHHHH
T ss_pred cCCEEEEEcCCCCCHHHHH--HHHHH
Confidence 4567999999999999843 34443
No 400
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=76.90 E-value=1.1 Score=38.56 Aligned_cols=16 Identities=25% Similarity=0.254 Sum_probs=13.7
Q ss_pred CEEEEccCCCchhHHh
Q 013858 160 DLLGCAETGSGKTAAF 175 (435)
Q Consensus 160 ~vii~~~TGsGKT~~~ 175 (435)
.++++|+.|||||+.+
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQG 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999854
No 401
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=76.89 E-value=0.92 Score=37.69 Aligned_cols=24 Identities=25% Similarity=0.174 Sum_probs=16.9
Q ss_pred CEEEEccCCCchhHHhHHHHHHHHHh
Q 013858 160 DLLGCAETGSGKTAAFTIPMIQHCVA 185 (435)
Q Consensus 160 ~vii~~~TGsGKT~~~~~~~l~~~~~ 185 (435)
.+.|+|++|||||+. +-++..++.
T Consensus 4 ~v~IvG~SGsGKSTL--~~~L~~~~~ 27 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTL--ITRMMPILR 27 (171)
T ss_dssp EEEEEESCHHHHHHH--HHHHHHHHH
T ss_pred EEEEECCCCCCHHHH--HHHHHHHhh
Confidence 477899999999984 444444443
No 402
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=76.81 E-value=1.4 Score=38.39 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=17.9
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHH
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQ 181 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~ 181 (435)
.|.-+.+.||.|+|||+ ++-++.
T Consensus 29 ~Ge~~~iiG~nGsGKST--Ll~~l~ 51 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKST--LLYILG 51 (224)
T ss_dssp TTCEEEEEECTTSCHHH--HHHHHT
T ss_pred CCCEEEEECCCCCCHHH--HHHHHh
Confidence 56778999999999998 444443
No 403
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=76.79 E-value=1.4 Score=37.37 Aligned_cols=19 Identities=26% Similarity=0.188 Sum_probs=15.6
Q ss_pred cCCCEEEEccCCCchhHHh
Q 013858 157 SGRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~ 175 (435)
.+.-++++|+.|||||+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQA 21 (213)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHH
Confidence 3556899999999999843
No 404
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=76.75 E-value=1.4 Score=38.47 Aligned_cols=23 Identities=39% Similarity=0.502 Sum_probs=18.2
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHH
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQ 181 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~ 181 (435)
.|..+.+.||.|+|||+ ++-++.
T Consensus 33 ~Ge~~~i~G~nGsGKST--Ll~~l~ 55 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTS--LLMMIM 55 (229)
T ss_dssp TTCEEEEECCTTSSHHH--HHHHHT
T ss_pred CCCEEEEECCCCCCHHH--HHHHHh
Confidence 57789999999999998 444443
No 405
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=76.74 E-value=2.3 Score=41.29 Aligned_cols=37 Identities=16% Similarity=0.086 Sum_probs=24.7
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEc
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA 201 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~ 201 (435)
.|.-+++.|++|+|||+.+ +-+....... +..++++.
T Consensus 196 ~G~liiIaG~pG~GKTtla-l~ia~~~a~~-------g~~vl~fS 232 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFA-LKQAKNMSDN-------DDVVNLHS 232 (444)
T ss_dssp SSCEEEEEECSSSSHHHHH-HHHHHHHHHT-------TCEEEEEC
T ss_pred CCcEEEEEeCCCCChHHHH-HHHHHHHHHc-------CCEEEEEE
Confidence 3456999999999999643 4444444332 45677776
No 406
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=76.49 E-value=1.4 Score=39.30 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=18.3
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHH
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQ 181 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~ 181 (435)
.|..+.+.||.|+|||+ ++-++.
T Consensus 45 ~Ge~~~i~G~nGsGKST--Ll~~l~ 67 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKST--IAKLLY 67 (260)
T ss_dssp TTCEEEEECSTTSSHHH--HHHHHT
T ss_pred CCCEEEEECCCCCCHHH--HHHHHh
Confidence 67789999999999998 444443
No 407
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=76.49 E-value=1.5 Score=39.37 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=16.4
Q ss_pred CCEEEEccCCCchhHHhHHHHHHH
Q 013858 159 RDLLGCAETGSGKTAAFTIPMIQH 182 (435)
Q Consensus 159 ~~vii~~~TGsGKT~~~~~~~l~~ 182 (435)
+.+++.||+|+|||+. +-++..
T Consensus 74 ~gvll~Gp~GtGKTtl--~~~i~~ 95 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHL--ARAVAG 95 (278)
T ss_dssp CEEEEECCTTSSHHHH--HHHHHH
T ss_pred CeEEEECCCcChHHHH--HHHHHH
Confidence 3499999999999984 334444
No 408
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=76.46 E-value=1.8 Score=40.94 Aligned_cols=25 Identities=36% Similarity=0.543 Sum_probs=20.3
Q ss_pred HHHHHhcCCC--EEEEccCCCchhHHh
Q 013858 151 AMPVALSGRD--LLGCAETGSGKTAAF 175 (435)
Q Consensus 151 ~i~~~~~~~~--vii~~~TGsGKT~~~ 175 (435)
.+..++.|.+ ++.-|+||||||.+.
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 5667778887 778899999999864
No 409
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=76.26 E-value=1.5 Score=38.88 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=18.6
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHH
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQH 182 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~ 182 (435)
.|.-+.+.||.|+|||+ ++-++.-
T Consensus 34 ~Ge~~~i~G~nGsGKST--Ll~~l~G 57 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKST--LTKLIQR 57 (247)
T ss_dssp TTCEEEEECSTTSSHHH--HHHHHTT
T ss_pred CCCEEEEECCCCCCHHH--HHHHHhc
Confidence 57789999999999998 4444433
No 410
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=76.20 E-value=1.2 Score=37.87 Aligned_cols=17 Identities=18% Similarity=0.251 Sum_probs=14.3
Q ss_pred CCEEEEccCCCchhHHh
Q 013858 159 RDLLGCAETGSGKTAAF 175 (435)
Q Consensus 159 ~~vii~~~TGsGKT~~~ 175 (435)
..++++|+.|||||+..
T Consensus 16 ~~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35899999999999843
No 411
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=76.18 E-value=11 Score=35.08 Aligned_cols=76 Identities=16% Similarity=0.246 Sum_probs=56.5
Q ss_pred CCeEEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHH----hCCCcEEEECcHHHHHHHHcCCCCCCC
Q 013858 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSR 269 (435)
Q Consensus 194 ~~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~T~~~l~~~l~~~~~~l~~ 269 (435)
+.++||.++++.-+..+++.++.. ++.+..++|+....+....+ .+..+|+|+|. .+ ...+++..
T Consensus 243 ~~~~lvf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gidip~ 311 (395)
T 3pey_A 243 IGSSIIFVATKKTANVLYGKLKSE-----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN-----VL-ARGIDIPT 311 (395)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG-----GG-SSSCCCTT
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhc-----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC-----hh-hcCCCccc
Confidence 578999999999888887777664 56788889988766544333 34578999995 22 44778889
Q ss_pred ceEEEEecCCc
Q 013858 270 VSFVILDEADR 280 (435)
Q Consensus 270 ~~~iIiDEah~ 280 (435)
+++||.-+...
T Consensus 312 ~~~Vi~~~~p~ 322 (395)
T 3pey_A 312 VSMVVNYDLPT 322 (395)
T ss_dssp EEEEEESSCCB
T ss_pred CCEEEEcCCCC
Confidence 99999866654
No 412
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=75.93 E-value=1.2 Score=36.35 Aligned_cols=16 Identities=19% Similarity=0.003 Sum_probs=13.7
Q ss_pred CEEEEccCCCchhHHh
Q 013858 160 DLLGCAETGSGKTAAF 175 (435)
Q Consensus 160 ~vii~~~TGsGKT~~~ 175 (435)
.++++|+.|||||+..
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4789999999999843
No 413
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=75.84 E-value=5.3 Score=38.36 Aligned_cols=54 Identities=19% Similarity=0.215 Sum_probs=43.6
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhC-CC---cEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcC
Q 013858 374 FPLTIVFVERKTRCDEVSEALVAE-GL---HAVALHGGRNQSDRESALRDFRNGSTNILVFSY 432 (435)
Q Consensus 374 ~~~~lVF~~~~~~~~~l~~~L~~~-~~---~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~ 432 (435)
.+++||.|+++.-+.+.++.+++. +. .+..+||+....++..... ..+|+|+|.
T Consensus 52 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~~ivv~T~ 109 (494)
T 1wp9_A 52 GGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RAKVIVATP 109 (494)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HCSEEEECH
T ss_pred CCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CCCEEEecH
Confidence 457999999999999999988775 55 8999999999877655443 468999884
No 414
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=75.84 E-value=1.9 Score=37.62 Aligned_cols=19 Identities=21% Similarity=0.242 Sum_probs=15.8
Q ss_pred cCCCEEEEccCCCchhHHh
Q 013858 157 SGRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~ 175 (435)
.+..+++.|++|||||+.+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a 33 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQA 33 (233)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3457999999999999854
No 415
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=75.74 E-value=1.5 Score=39.00 Aligned_cols=23 Identities=35% Similarity=0.424 Sum_probs=18.1
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHH
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQ 181 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~ 181 (435)
.|..+.+.||.|+|||+ ++-++.
T Consensus 32 ~Ge~~~liG~nGsGKST--Llk~l~ 54 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKST--LINVIT 54 (257)
T ss_dssp TTCEEEEECSTTSSHHH--HHHHHT
T ss_pred CCCEEEEECCCCCCHHH--HHHHHh
Confidence 57789999999999998 444443
No 416
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=75.72 E-value=3.1 Score=34.78 Aligned_cols=20 Identities=20% Similarity=0.318 Sum_probs=15.3
Q ss_pred EEEEccCCCchhHHhHHHHHHH
Q 013858 161 LLGCAETGSGKTAAFTIPMIQH 182 (435)
Q Consensus 161 vii~~~TGsGKT~~~~~~~l~~ 182 (435)
+++.|+.|||||+.. -.|..
T Consensus 3 I~l~G~~GsGKsT~~--~~L~~ 22 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQI--QLLAQ 22 (197)
T ss_dssp EEEECSTTSSHHHHH--HHHHH
T ss_pred EEEECCCCCCHHHHH--HHHHH
Confidence 789999999999853 34444
No 417
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=75.69 E-value=3.2 Score=34.47 Aligned_cols=15 Identities=40% Similarity=0.302 Sum_probs=13.1
Q ss_pred CEEEEccCCCchhHH
Q 013858 160 DLLGCAETGSGKTAA 174 (435)
Q Consensus 160 ~vii~~~TGsGKT~~ 174 (435)
-++++|+.|+|||+.
T Consensus 8 ~i~i~G~sGsGKTTl 22 (174)
T 1np6_A 8 LLAFAAWSGTGKTTL 22 (174)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEEeCCCCCHHHH
Confidence 488999999999973
No 418
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=75.69 E-value=1.2 Score=37.88 Aligned_cols=16 Identities=31% Similarity=0.135 Sum_probs=13.6
Q ss_pred CEEEEccCCCchhHHh
Q 013858 160 DLLGCAETGSGKTAAF 175 (435)
Q Consensus 160 ~vii~~~TGsGKT~~~ 175 (435)
.+.+.|+.|||||+..
T Consensus 4 ~i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999843
No 419
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=75.65 E-value=1.2 Score=37.92 Aligned_cols=19 Identities=26% Similarity=-0.013 Sum_probs=15.4
Q ss_pred cCCCEEEEccCCCchhHHh
Q 013858 157 SGRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~ 175 (435)
.+.-+.++|++|||||+.+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLA 38 (207)
T ss_dssp CCEEEEEEESTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3456889999999999843
No 420
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=75.55 E-value=1.6 Score=40.06 Aligned_cols=26 Identities=19% Similarity=0.116 Sum_probs=18.9
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHh
Q 013858 158 GRDLLGCAETGSGKTAAFTIPMIQHCVA 185 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~~~~~l~~~~~ 185 (435)
|.-+.|.|++|||||+ ++-++..+..
T Consensus 90 g~ivgI~G~sGsGKST--L~~~L~gll~ 115 (312)
T 3aez_A 90 PFIIGVAGSVAVGKST--TARVLQALLA 115 (312)
T ss_dssp CEEEEEECCTTSCHHH--HHHHHHHHHH
T ss_pred CEEEEEECCCCchHHH--HHHHHHhhcc
Confidence 4458899999999998 4455555444
No 421
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=75.50 E-value=1.6 Score=39.20 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=18.0
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHH
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQ 181 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~ 181 (435)
.|.-+.+.||.|+|||+ ++-++.
T Consensus 36 ~Ge~~~liG~nGsGKST--Ll~~l~ 58 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKST--LLRLLT 58 (266)
T ss_dssp TTCEEEEECCTTSCHHH--HHHHHT
T ss_pred CCCEEEEECCCCCcHHH--HHHHHh
Confidence 57779999999999998 444443
No 422
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=75.48 E-value=2.7 Score=40.89 Aligned_cols=21 Identities=24% Similarity=0.289 Sum_probs=17.9
Q ss_pred HhcCCCEEEEccCCCchhHHh
Q 013858 155 ALSGRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 155 ~~~~~~vii~~~TGsGKT~~~ 175 (435)
+.+|+.+++.|+.|+|||+.+
T Consensus 148 i~kGq~~~i~G~sGvGKTtL~ 168 (473)
T 1sky_E 148 YIKGGKIGLFGGAGVGKTVLI 168 (473)
T ss_dssp EETTCEEEEECCSSSCHHHHH
T ss_pred hccCCEEEEECCCCCCccHHH
Confidence 347889999999999999854
No 423
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=75.43 E-value=2.1 Score=36.47 Aligned_cols=19 Identities=16% Similarity=0.118 Sum_probs=16.1
Q ss_pred cCCCEEEEccCCCchhHHh
Q 013858 157 SGRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~ 175 (435)
.+.-++++|+.|||||+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~ 26 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQS 26 (215)
T ss_dssp CCCEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4667999999999999853
No 424
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=75.43 E-value=1.4 Score=39.58 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=18.8
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHH
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQH 182 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~ 182 (435)
.|.-+.+.||.|+|||+ ++-++.-
T Consensus 45 ~Ge~~~l~G~NGsGKST--Llk~l~G 68 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKST--LSATLAG 68 (267)
T ss_dssp TTCEEEEECCTTSSHHH--HHHHHHT
T ss_pred CCCEEEEECCCCCCHHH--HHHHHhC
Confidence 57789999999999998 4444444
No 425
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=75.40 E-value=1.2 Score=37.75 Aligned_cols=16 Identities=19% Similarity=0.218 Sum_probs=13.7
Q ss_pred CEEEEccCCCchhHHh
Q 013858 160 DLLGCAETGSGKTAAF 175 (435)
Q Consensus 160 ~vii~~~TGsGKT~~~ 175 (435)
.+.++|+.|||||+..
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4789999999999843
No 426
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=75.21 E-value=2.4 Score=36.34 Aligned_cols=56 Identities=11% Similarity=0.112 Sum_probs=40.8
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhC--------CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcC
Q 013858 373 PFPLTIVFVERKTRCDEVSEALVAE--------GLHAVALHGGRNQSDRESALRDFRNGSTNILVFSY 432 (435)
Q Consensus 373 ~~~~~lVF~~~~~~~~~l~~~L~~~--------~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~ 432 (435)
...++||.++++.-+.++++.+++. ++.+..++|+....++... + .+..+|+|+|.
T Consensus 71 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~Iiv~Tp 134 (219)
T 1q0u_A 71 AEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEK---L-NVQPHIVIGTP 134 (219)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCC---C-SSCCSEEEECH
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHH---c-CCCCCEEEeCH
Confidence 3457999999999999998887653 5788899999764432211 1 24678999995
No 427
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=75.18 E-value=1.6 Score=38.36 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=18.0
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHH
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQ 181 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~ 181 (435)
.|.-+.+.||.|+|||+ ++-++.
T Consensus 31 ~Ge~~~l~G~nGsGKST--Ll~~l~ 53 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTT--TLSAIA 53 (240)
T ss_dssp TTCEEEEECSTTSSHHH--HHHHHT
T ss_pred CCCEEEEECCCCCCHHH--HHHHHh
Confidence 57779999999999998 444443
No 428
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=75.16 E-value=1.7 Score=38.26 Aligned_cols=18 Identities=22% Similarity=0.115 Sum_probs=15.3
Q ss_pred cCCCEEEEccCCCchhHH
Q 013858 157 SGRDLLGCAETGSGKTAA 174 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~ 174 (435)
.+..++++|+.|||||+.
T Consensus 26 ~~~~i~l~G~~GsGKSTl 43 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTV 43 (246)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 346799999999999984
No 429
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=75.14 E-value=3.9 Score=43.96 Aligned_cols=97 Identities=13% Similarity=0.216 Sum_probs=55.9
Q ss_pred cccCCCHHH-HHHHHHHcCceEEecCCCCCCCCCCCCcccCC-C-CHHHHHHHHHCCCC--CC--cHHHHHHHHHHh---
Q 013858 87 RVLRFNPEQ-IEEVRLRLNVDVTVASGSVPAPAPIESFTDMC-L-HPSIMKDIEFHEYT--RP--TSIQAQAMPVAL--- 156 (435)
Q Consensus 87 ~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-l-~~~l~~~l~~~~~~--~p--~~~Q~~~i~~~~--- 156 (435)
.+..+++.. ...++.++......+-.+ ++.-.+++|..++ + ++..++........ .| +.+-..|+..++
T Consensus 64 ~L~~LnE~svL~nL~~Ry~~~~IYTy~G-~iLIaVNPyk~lp~iY~~~~~~~Y~g~~~~~lpPHIfaiA~~AY~~M~~~~ 142 (1052)
T 4anj_A 64 SLMYLNEATLLHNIKVRYSKDRIYTYVA-NILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLK 142 (1052)
T ss_dssp GSSSCSHHHHHHHHHHHHHTTCCEEEET-TEEEEECCSSCCTTTTSHHHHHHHTTCCBTTBCSCHHHHHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHcCCCcEEeEC-CEEEEECCCCCccccCCHHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHHhC
Confidence 445556554 466677664433221111 3344556677775 4 66666665444322 23 344556666665
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHHh
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQHCVA 185 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~~~~ 185 (435)
.++.+||.|++|+|||.+. --++.++..
T Consensus 143 ~nQsIiiSGESGAGKTest-K~im~yLa~ 170 (1052)
T 4anj_A 143 LSQSIIVSGESGAGKTENT-KFVLRYLTE 170 (1052)
T ss_dssp CCEEEEEECSTTSSHHHHH-HHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHH-HHHHHHHHH
Confidence 3456999999999999875 345555543
No 430
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=75.10 E-value=6.4 Score=36.81 Aligned_cols=55 Identities=16% Similarity=0.258 Sum_probs=43.6
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcC
Q 013858 373 PFPLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVFSY 432 (435)
Q Consensus 373 ~~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~ 432 (435)
..+++||.|+++.-+.++++.++.. ++.+..++|+....++...+. ..+|+|+|.
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~ 146 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTP 146 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECH
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECH
Confidence 4567999999999999998888653 688999999998766655443 467999984
No 431
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=75.06 E-value=1.6 Score=38.96 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=18.0
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHH
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQ 181 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~ 181 (435)
.|.-+.+.||.|+|||+ ++-++.
T Consensus 31 ~Ge~~~liG~nGsGKST--Llk~l~ 53 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKST--FLRCIN 53 (262)
T ss_dssp TTCEEEEECCTTSSHHH--HHHHHT
T ss_pred CCCEEEEECCCCCCHHH--HHHHHh
Confidence 56778999999999998 444443
No 432
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=75.04 E-value=1.3 Score=37.05 Aligned_cols=16 Identities=31% Similarity=0.135 Sum_probs=13.6
Q ss_pred CEEEEccCCCchhHHh
Q 013858 160 DLLGCAETGSGKTAAF 175 (435)
Q Consensus 160 ~vii~~~TGsGKT~~~ 175 (435)
.++++|+.|||||+..
T Consensus 2 ~I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999843
No 433
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=75.04 E-value=3.7 Score=40.45 Aligned_cols=19 Identities=32% Similarity=0.377 Sum_probs=16.1
Q ss_pred cCCCEEEEccCCCchhHHh
Q 013858 157 SGRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~ 175 (435)
.+.+++|.|.||||||++.
T Consensus 166 ~~pHlLIaG~TGSGKSt~L 184 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGV 184 (512)
T ss_dssp GSCSEEEECCTTSSHHHHH
T ss_pred cCceEEEECCCCCCHHHHH
Confidence 4568999999999999753
No 434
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=74.98 E-value=1.3 Score=39.56 Aligned_cols=17 Identities=18% Similarity=0.104 Sum_probs=14.5
Q ss_pred CCEEEEccCCCchhHHh
Q 013858 159 RDLLGCAETGSGKTAAF 175 (435)
Q Consensus 159 ~~vii~~~TGsGKT~~~ 175 (435)
..++++|+.|||||+.+
T Consensus 5 ~lIvl~G~pGSGKSTla 21 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFS 21 (260)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred EEEEEEcCCCCCHHHHH
Confidence 45899999999999854
No 435
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=74.91 E-value=1.4 Score=38.89 Aligned_cols=24 Identities=13% Similarity=0.318 Sum_probs=18.4
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHH
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQH 182 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~ 182 (435)
.|..+.+.||.|+|||+ ++-++.-
T Consensus 27 ~Ge~~~i~G~nGsGKST--Ll~~l~G 50 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKST--IFSLLER 50 (243)
T ss_dssp TTEEEEEECCTTSSHHH--HHHHHTT
T ss_pred CCCEEEEECCCCCCHHH--HHHHHhc
Confidence 56779999999999998 4444443
No 436
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=74.75 E-value=2.8 Score=31.35 Aligned_cols=37 Identities=19% Similarity=0.264 Sum_probs=31.8
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCC-cEEEecCCCC
Q 013858 373 PFPLTIVFVERKTRCDEVSEALVAEGL-HAVALHGGRN 409 (435)
Q Consensus 373 ~~~~~lVF~~~~~~~~~l~~~L~~~~~-~v~~lh~~~~ 409 (435)
+..+++|||.+-..+...+..|+..|+ +|..+.||+.
T Consensus 51 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 88 (106)
T 3hix_A 51 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 88 (106)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHH
T ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHH
Confidence 345699999998899999999999998 5899999865
No 437
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=74.72 E-value=7.6 Score=35.68 Aligned_cols=56 Identities=16% Similarity=0.100 Sum_probs=44.9
Q ss_pred hhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCCHH
Q 013858 349 ENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRNQS 411 (435)
Q Consensus 349 ~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~~~ 411 (435)
...|+..|.+++.+.. ..++++|||++..+..+-+.+++...|+.+..+.|.....
T Consensus 107 ~SGKf~~L~~LL~~l~-------~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~ 162 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQ-------EYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKS 162 (328)
T ss_dssp TCHHHHHHHHHHHHHT-------TSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC--
T ss_pred cCccHHHHHHHHHHHH-------hCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhh
Confidence 4567877777776654 3345799999999999999999999999999999986543
No 438
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=74.43 E-value=13 Score=34.77 Aligned_cols=73 Identities=15% Similarity=0.214 Sum_probs=53.1
Q ss_pred CCeEEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHH----hCCCcEEEECcHHHHHHHHcCCCCCCC
Q 013858 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSR 269 (435)
Q Consensus 194 ~~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~T~~~l~~~l~~~~~~l~~ 269 (435)
+.++||.++++.-+..+++.++.. ++.+..++|+....+....+ .+..+|+|+|. .+ ...+++..
T Consensus 258 ~~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~-~~Gidip~ 326 (400)
T 1s2m_A 258 INQAIIFCNSTNRVELLAKKITDL-----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD-----LL-TRGIDIQA 326 (400)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHH-----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS-----CS-SSSCCCTT
T ss_pred CCcEEEEEecHHHHHHHHHHHHhc-----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----cc-ccCCCccC
Confidence 468999999999988888877765 46788888888766544332 34578999994 22 33677888
Q ss_pred ceEEEEec
Q 013858 270 VSFVILDE 277 (435)
Q Consensus 270 ~~~iIiDE 277 (435)
+++||.-+
T Consensus 327 ~~~Vi~~~ 334 (400)
T 1s2m_A 327 VNVVINFD 334 (400)
T ss_dssp EEEEEESS
T ss_pred CCEEEEeC
Confidence 88888533
No 439
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=74.39 E-value=4.4 Score=45.13 Aligned_cols=39 Identities=21% Similarity=0.362 Sum_probs=26.4
Q ss_pred CCCceEEEEecCCcccCCCCHHHHHHHHHhCCCCCeEEE
Q 013858 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLPDKHQTLL 305 (435)
Q Consensus 267 l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~~~q~i~ 305 (435)
+++-+.+|+||+=--+|..-...+.+.+..+.+++-+|+
T Consensus 570 ~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~ii 608 (1321)
T 4f4c_A 570 VRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTII 608 (1321)
T ss_dssp TTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEE
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 566789999999877777666666666655544443333
No 440
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=74.35 E-value=1.4 Score=39.43 Aligned_cols=23 Identities=35% Similarity=0.588 Sum_probs=18.0
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHH
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQ 181 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~ 181 (435)
.|..+.+.||.|+|||+ ++-++.
T Consensus 32 ~Ge~~~liG~nGsGKST--Ll~~i~ 54 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKST--LLQIVA 54 (266)
T ss_dssp TTCEEEEECSTTSSHHH--HHHHHT
T ss_pred CCCEEEEECCCCCcHHH--HHHHHh
Confidence 56778999999999998 444443
No 441
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=74.23 E-value=21 Score=36.37 Aligned_cols=77 Identities=18% Similarity=0.276 Sum_probs=57.6
Q ss_pred CCeEEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHH----hCCCcEEEECcHHHHHHHHcCCCCCCC
Q 013858 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSR 269 (435)
Q Consensus 194 ~~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~T~~~l~~~l~~~~~~l~~ 269 (435)
+.++||.++++..+..+.+.+++. ++.+..++|+....+....+ .+..+|+|+|. .+ ...+++..
T Consensus 445 ~~~vlVf~~t~~~ae~L~~~L~~~-----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~-----~l-~~GlDip~ 513 (661)
T 2d7d_A 445 NERVLVTTLTKKMSEDLTDYLKEI-----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----LL-REGLDIPE 513 (661)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC-----CC-STTCCCTT
T ss_pred CCeEEEEECCHHHHHHHHHHHHhc-----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc-----hh-hCCcccCC
Confidence 568999999999888887777664 56778888877655543332 25689999995 22 44778889
Q ss_pred ceEEEEecCCcc
Q 013858 270 VSFVILDEADRM 281 (435)
Q Consensus 270 ~~~iIiDEah~~ 281 (435)
+++||+-+++..
T Consensus 514 v~lVi~~d~d~~ 525 (661)
T 2d7d_A 514 VSLVAILDADKE 525 (661)
T ss_dssp EEEEEETTTTCC
T ss_pred CCEEEEeCcccc
Confidence 999999999854
No 442
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=74.21 E-value=2.3 Score=31.87 Aligned_cols=37 Identities=27% Similarity=0.381 Sum_probs=31.5
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCCcEEEecCCCC
Q 013858 373 PFPLTIVFVERKTRCDEVSEALVAEGLHAVALHGGRN 409 (435)
Q Consensus 373 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh~~~~ 409 (435)
+..+++|+|.+-..+...+..|++.|+.+..+.||+.
T Consensus 55 ~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~~ 91 (103)
T 3iwh_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChHH
Confidence 3456999999888899999999999999888888753
No 443
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=74.21 E-value=1.8 Score=38.96 Aligned_cols=32 Identities=25% Similarity=0.510 Sum_probs=21.3
Q ss_pred CCCceEEEEecCCcccCCCCHHHHHHHHHhCC
Q 013858 267 LSRVSFVILDEADRMLDMGFEPQIREVMQNLP 298 (435)
Q Consensus 267 l~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~ 298 (435)
+.+-+++++||.-.-+|......+..++..+.
T Consensus 172 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~ 203 (271)
T 2ixe_A 172 IRKPRLLILDNATSALDAGNQLRVQRLLYESP 203 (271)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHCT
T ss_pred hcCCCEEEEECCccCCCHHHHHHHHHHHHHHH
Confidence 44557788888876666555666666666664
No 444
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=74.19 E-value=1.8 Score=38.76 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=18.1
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHH
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQ 181 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~ 181 (435)
.|..+.+.||.|+|||+ ++-++.
T Consensus 49 ~Gei~~liG~NGsGKST--Llk~l~ 71 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKST--FLRCLN 71 (263)
T ss_dssp TTCEEEEECCTTSSHHH--HHHHHT
T ss_pred CCCEEEEEcCCCCcHHH--HHHHHH
Confidence 57779999999999998 444443
No 445
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=74.17 E-value=1.9 Score=38.20 Aligned_cols=24 Identities=17% Similarity=0.185 Sum_probs=18.8
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHH
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQH 182 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~ 182 (435)
.|..+.+.||.|+|||+ ++-++.-
T Consensus 28 ~Ge~~~l~G~nGsGKST--Llk~l~G 51 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKST--LGKILAG 51 (250)
T ss_dssp TTCEEEEECSTTSSHHH--HHHHHHT
T ss_pred CCCEEEEECCCCCCHHH--HHHHHhC
Confidence 57779999999999998 4444444
No 446
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=74.14 E-value=3.7 Score=40.97 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=18.7
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHH
Q 013858 158 GRDLLGCAETGSGKTAAFTIPMIQHCV 184 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~~~~~l~~~~ 184 (435)
..+++|.|.||||||.+. -.++..++
T Consensus 214 ~pHlLIaG~TGSGKS~~L-~tlI~sLl 239 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGV-NAMLLSIL 239 (574)
T ss_dssp SCCEEEECCTTSSHHHHH-HHHHHHHH
T ss_pred CCeeEEECCCCCCHHHHH-HHHHHHHH
Confidence 357999999999999764 34444444
No 447
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=74.12 E-value=1.2 Score=40.82 Aligned_cols=24 Identities=21% Similarity=0.458 Sum_probs=18.8
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHH
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQH 182 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~ 182 (435)
.|.-+.|+||+|+|||+ ++-++..
T Consensus 79 ~Ge~vaivG~sGsGKST--Ll~ll~g 102 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKST--ILRLLFR 102 (306)
T ss_dssp TTCEEEEESSSCHHHHH--HHHHHTT
T ss_pred CCCEEEEECCCCchHHH--HHHHHHc
Confidence 57789999999999998 4444443
No 448
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=74.03 E-value=1.8 Score=38.53 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=18.1
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHH
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQ 181 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~ 181 (435)
.|..+.+.||.|+|||+ ++-++.
T Consensus 40 ~Gei~~l~G~NGsGKST--Llk~l~ 62 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTT--TLRIIS 62 (256)
T ss_dssp TTCEEEEECCTTSSHHH--HHHHHT
T ss_pred CCcEEEEECCCCCCHHH--HHHHHh
Confidence 57779999999999998 444443
No 449
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=73.96 E-value=1.7 Score=38.58 Aligned_cols=18 Identities=17% Similarity=0.135 Sum_probs=15.5
Q ss_pred cCCCEEEEccCCCchhHH
Q 013858 157 SGRDLLGCAETGSGKTAA 174 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~ 174 (435)
.+..+.|.|++|||||+.
T Consensus 26 ~g~~I~I~G~~GsGKSTl 43 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTL 43 (252)
T ss_dssp TSCEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 456799999999999984
No 450
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=73.96 E-value=2.1 Score=38.83 Aligned_cols=16 Identities=25% Similarity=0.227 Sum_probs=13.6
Q ss_pred CEEEEccCCCchhHHh
Q 013858 160 DLLGCAETGSGKTAAF 175 (435)
Q Consensus 160 ~vii~~~TGsGKT~~~ 175 (435)
-+.|+|++|||||+.+
T Consensus 33 ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTS 48 (290)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999854
No 451
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=73.90 E-value=1.5 Score=37.81 Aligned_cols=18 Identities=28% Similarity=0.385 Sum_probs=15.0
Q ss_pred CCCEEEEccCCCchhHHh
Q 013858 158 GRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~ 175 (435)
+..+++.|+.|||||+..
T Consensus 5 ~~~I~l~G~~GsGKsT~a 22 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQC 22 (217)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 346899999999999843
No 452
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=73.88 E-value=5.1 Score=43.02 Aligned_cols=96 Identities=20% Similarity=0.255 Sum_probs=53.3
Q ss_pred cccCCCHHH-HHHHHHHcCceEEecCCCCCCCCCCCCcccCCC-CHHHHHHHHHCCC--CCCc--HHHHHHHHHHh---c
Q 013858 87 RVLRFNPEQ-IEEVRLRLNVDVTVASGSVPAPAPIESFTDMCL-HPSIMKDIEFHEY--TRPT--SIQAQAMPVAL---S 157 (435)
Q Consensus 87 ~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l-~~~l~~~l~~~~~--~~p~--~~Q~~~i~~~~---~ 157 (435)
.+...++.. ...++.++......+-.+ ++.-.+++|..+++ ++.++........ ..|. .+=..|+..++ .
T Consensus 93 ~L~~l~e~~vl~nL~~Ry~~~~iYTy~G-~ilvavNPyk~l~iy~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~ 171 (1010)
T 1g8x_A 93 ELSYLNEPAVFHNLRVRYNQDLIYTYSG-LFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQ 171 (1010)
T ss_dssp GCSSCCHHHHHHHHHHHHTTTCCEEEET-TEEEEECCSSCCSCCSHHHHHHHTTCCTTTSCCCHHHHHHHHHHHHHHHTC
T ss_pred hhhcccHHHHHHHHHHHHhhCCceeccC-ceeEEecCCccccCCCHHHHHHhcCCCccCCCccHHHHHHHHHHHHHhcCC
Confidence 444555543 466777766433222111 33344566777764 4555554443322 2333 34456666655 3
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHH
Q 013858 158 GRDLLGCAETGSGKTAAFTIPMIQHCV 184 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~~~~~l~~~~ 184 (435)
++.+||.|++|+|||.+. --++.++.
T Consensus 172 ~QsIiisGESGAGKTe~~-K~i~~yla 197 (1010)
T 1g8x_A 172 NQSLLITGESGAGKTENT-KKVIQYLA 197 (1010)
T ss_dssp CEEEEEEESTTSSHHHHH-HHHHHHHH
T ss_pred CeEEEEeCCCCCCcchHH-HHHHHHHH
Confidence 456999999999999875 33444444
No 453
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=73.84 E-value=1.4 Score=37.80 Aligned_cols=16 Identities=13% Similarity=0.098 Sum_probs=13.7
Q ss_pred CEEEEccCCCchhHHh
Q 013858 160 DLLGCAETGSGKTAAF 175 (435)
Q Consensus 160 ~vii~~~TGsGKT~~~ 175 (435)
.+++.|+.|||||+..
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQA 17 (214)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999843
No 454
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=73.82 E-value=1.8 Score=38.29 Aligned_cols=17 Identities=29% Similarity=0.434 Sum_probs=15.4
Q ss_pred cCCCEEEEccCCCchhH
Q 013858 157 SGRDLLGCAETGSGKTA 173 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~ 173 (435)
.|..+.+.||.|+|||+
T Consensus 25 ~Ge~~~liG~NGsGKST 41 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKST 41 (249)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 56778999999999998
No 455
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=73.80 E-value=2 Score=42.05 Aligned_cols=18 Identities=33% Similarity=0.313 Sum_probs=15.4
Q ss_pred CCCEEEEccCCCchhHHh
Q 013858 158 GRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~ 175 (435)
..++++.||+|+|||+.+
T Consensus 201 ~~~~LL~G~pG~GKT~la 218 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIA 218 (468)
T ss_dssp SCEEEEESCTTTTTHHHH
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 357999999999999854
No 456
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=73.78 E-value=3 Score=38.20 Aligned_cols=25 Identities=16% Similarity=0.122 Sum_probs=18.0
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHH
Q 013858 158 GRDLLGCAETGSGKTAAFTIPMIQHCV 184 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~~~~~l~~~~ 184 (435)
|.-+.|.|+.|||||+ ++-++..+.
T Consensus 80 g~iigI~G~~GsGKST--l~~~L~~~l 104 (308)
T 1sq5_A 80 PYIISIAGSVAVGKST--TARVLQALL 104 (308)
T ss_dssp CEEEEEEECTTSSHHH--HHHHHHHHH
T ss_pred CEEEEEECCCCCCHHH--HHHHHHHHH
Confidence 3458899999999998 444555543
No 457
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=73.68 E-value=1.8 Score=39.03 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=18.1
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHH
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQ 181 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~ 181 (435)
.|.-+.+.||.|+|||+ ++-++.
T Consensus 46 ~Ge~~~liG~NGsGKST--Llk~l~ 68 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTT--LLNILN 68 (279)
T ss_dssp TTCEEEEECCTTSSHHH--HHHHHT
T ss_pred CCCEEEEECCCCCcHHH--HHHHHh
Confidence 57779999999999998 444443
No 458
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=73.45 E-value=2.3 Score=43.10 Aligned_cols=30 Identities=23% Similarity=0.262 Sum_probs=21.8
Q ss_pred HHHhcCCCEEEEccCCCchhHHhHHHHHHHHH
Q 013858 153 PVALSGRDLLGCAETGSGKTAAFTIPMIQHCV 184 (435)
Q Consensus 153 ~~~~~~~~vii~~~TGsGKT~~~~~~~l~~~~ 184 (435)
..+..|..+++.||+|+|||+. +-++..++
T Consensus 55 ~~i~~g~~vll~Gp~GtGKTtl--ar~ia~~l 84 (604)
T 3k1j_A 55 TAANQKRHVLLIGEPGTGKSML--GQAMAELL 84 (604)
T ss_dssp HHHHTTCCEEEECCTTSSHHHH--HHHHHHTS
T ss_pred ccccCCCEEEEEeCCCCCHHHH--HHHHhccC
Confidence 3455788999999999999984 33444433
No 459
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=73.39 E-value=1.4 Score=42.74 Aligned_cols=18 Identities=28% Similarity=0.301 Sum_probs=15.3
Q ss_pred CCCEEEEccCCCchhHHh
Q 013858 158 GRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~ 175 (435)
.+.+++.||+|+|||+.+
T Consensus 167 ~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 367999999999999843
No 460
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=73.25 E-value=13 Score=34.91 Aligned_cols=73 Identities=15% Similarity=0.267 Sum_probs=53.4
Q ss_pred CCeEEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHH----hCCCcEEEECcHHHHHHHHcCCCCCCC
Q 013858 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSEL----RGGVSIVVATPGRFLDHLQQGNTSLSR 269 (435)
Q Consensus 194 ~~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~T~~~l~~~l~~~~~~l~~ 269 (435)
..++||.++++.-+..+++.+.+. ++.+..++|+....+....+ .+..+|+|+|. .+ ...+++..
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gidi~~ 344 (410)
T 2j0s_A 276 ITQAVIFCNTKRKVDWLTEKMREA-----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD-----VW-ARGLDVPQ 344 (410)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG-----GG-SSSCCCTT
T ss_pred CCcEEEEEcCHHHHHHHHHHHHhC-----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC-----hh-hCcCCccc
Confidence 357999999999888887777663 56788889988766544332 35678999995 22 34678889
Q ss_pred ceEEEEec
Q 013858 270 VSFVILDE 277 (435)
Q Consensus 270 ~~~iIiDE 277 (435)
+++||.-+
T Consensus 345 v~~Vi~~~ 352 (410)
T 2j0s_A 345 VSLIINYD 352 (410)
T ss_dssp EEEEEESS
T ss_pred CCEEEEEC
Confidence 99988643
No 461
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=72.94 E-value=1.9 Score=38.22 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=18.0
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHH
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQ 181 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~ 181 (435)
.|..+.+.||.|+|||+ ++-++.
T Consensus 30 ~Ge~~~l~G~nGsGKST--Ll~~l~ 52 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKST--LLDLLL 52 (253)
T ss_dssp TTCEEEEECCSSSSHHH--HHHHHT
T ss_pred CCCEEEEECCCCCCHHH--HHHHHh
Confidence 56778999999999998 444443
No 462
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=72.93 E-value=1.7 Score=36.60 Aligned_cols=16 Identities=25% Similarity=0.187 Sum_probs=13.8
Q ss_pred CEEEEccCCCchhHHh
Q 013858 160 DLLGCAETGSGKTAAF 175 (435)
Q Consensus 160 ~vii~~~TGsGKT~~~ 175 (435)
.+.|+|++|||||++.
T Consensus 10 ~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVA 25 (203)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4889999999999843
No 463
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=72.84 E-value=1.6 Score=37.73 Aligned_cols=19 Identities=21% Similarity=0.305 Sum_probs=15.3
Q ss_pred cCCCEEEEccCCCchhHHh
Q 013858 157 SGRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~ 175 (435)
+.+-+++.||+||||++.+
T Consensus 28 k~kiI~llGpPGsGKgTqa 46 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQC 46 (217)
T ss_dssp SCEEEEEECCTTCCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3456889999999999854
No 464
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=72.62 E-value=1.7 Score=43.85 Aligned_cols=15 Identities=20% Similarity=0.386 Sum_probs=14.0
Q ss_pred CEEEEccCCCchhHH
Q 013858 160 DLLGCAETGSGKTAA 174 (435)
Q Consensus 160 ~vii~~~TGsGKT~~ 174 (435)
++++.||+|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999973
No 465
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=72.53 E-value=2.4 Score=36.13 Aligned_cols=41 Identities=17% Similarity=0.162 Sum_probs=23.4
Q ss_pred CceEEEEecCCcccCCC--CH--HHHHHHHHh-CCCCCeEEEEccc
Q 013858 269 RVSFVILDEADRMLDMG--FE--PQIREVMQN-LPDKHQTLLFSAT 309 (435)
Q Consensus 269 ~~~~iIiDEah~~~~~~--~~--~~i~~i~~~-~~~~~q~i~~SAT 309 (435)
+-.+|||||||.+.... .. ..+...+.. -....++|+++..
T Consensus 87 ~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~ 132 (199)
T 2r2a_A 87 IGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQG 132 (199)
T ss_dssp TTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESC
T ss_pred CceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCC
Confidence 35799999999874321 11 122222222 2345688888877
No 466
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=72.49 E-value=1 Score=39.92 Aligned_cols=17 Identities=29% Similarity=0.415 Sum_probs=14.5
Q ss_pred CCEEEEccCCCchhHHh
Q 013858 159 RDLLGCAETGSGKTAAF 175 (435)
Q Consensus 159 ~~vii~~~TGsGKT~~~ 175 (435)
..++++|++|||||+.+
T Consensus 33 ~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIH 49 (253)
T ss_dssp EEEEEESCGGGTTHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45899999999999843
No 467
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=72.40 E-value=1.6 Score=37.78 Aligned_cols=16 Identities=31% Similarity=0.353 Sum_probs=13.6
Q ss_pred CEEEEccCCCchhHHh
Q 013858 160 DLLGCAETGSGKTAAF 175 (435)
Q Consensus 160 ~vii~~~TGsGKT~~~ 175 (435)
.+++.|+.|||||+..
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQG 17 (223)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999843
No 468
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=72.40 E-value=1.9 Score=37.02 Aligned_cols=16 Identities=25% Similarity=0.208 Sum_probs=13.6
Q ss_pred CEEEEccCCCchhHHh
Q 013858 160 DLLGCAETGSGKTAAF 175 (435)
Q Consensus 160 ~vii~~~TGsGKT~~~ 175 (435)
.+++.||+||||++.+
T Consensus 2 ~Iil~GpPGsGKgTqa 17 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQA 17 (206)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999854
No 469
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=72.07 E-value=5.3 Score=28.29 Aligned_cols=36 Identities=17% Similarity=0.205 Sum_probs=29.5
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCCc-EEEecCCCC
Q 013858 373 PFPLTIVFVERKTRCDEVSEALVAEGLH-AVALHGGRN 409 (435)
Q Consensus 373 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~-v~~lh~~~~ 409 (435)
+..+++|+|.+-..+...+..|++.|+. +..+ |++.
T Consensus 40 ~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 40 KNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp TTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHH
Confidence 3456999999988999999999999984 6666 7754
No 470
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=72.02 E-value=4.1 Score=48.43 Aligned_cols=48 Identities=13% Similarity=0.163 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHH----HHHhcCCCEEEEccCCCchhHHhH
Q 013858 128 LHPSIMKDIEFHEYTRPTSIQAQAM----PVALSGRDLLGCAETGSGKTAAFT 176 (435)
Q Consensus 128 l~~~l~~~l~~~~~~~p~~~Q~~~i----~~~~~~~~vii~~~TGsGKT~~~~ 176 (435)
+...+.+.+...++. +.+.+..-+ ..+..++.++++||||+|||+++.
T Consensus 890 l~~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~ 941 (2695)
T 4akg_A 890 IVQCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWK 941 (2695)
T ss_dssp HHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHH
Confidence 334556667777765 455553332 333456779999999999999653
No 471
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=71.83 E-value=3.6 Score=45.22 Aligned_cols=59 Identities=5% Similarity=-0.028 Sum_probs=37.9
Q ss_pred EEcChhhHHHHHHHHHHHHHHhhhccCCCCCcEEEEeCchH-HHHHHHHHHHhCCCcEEEecC
Q 013858 345 EKVSENEKVDRLLALLVEEAFLAEKSCHPFPLTIVFVERKT-RCDEVSEALVAEGLHAVALHG 406 (435)
Q Consensus 345 ~~~~~~~k~~~l~~~l~~~~~~~~~~~~~~~~~lVF~~~~~-~~~~l~~~L~~~~~~v~~lh~ 406 (435)
...+.......+...+....... ..+..-+.|.|.+.. .+..+...|.+.|+++....+
T Consensus 316 ~~~~~~~Ea~~ia~~I~~l~~~~---g~~~~diAVL~R~~~~~~~~i~~~L~~~gIP~~~~~~ 375 (1166)
T 3u4q_B 316 QAANRRAELEGIAREIHALVREK---GYRYKDVAILARQPEDYKDMVKEVFADYEIPYFIDGK 375 (1166)
T ss_dssp EESSHHHHHHHHHHHHHHHHHTS---CCCGGGEEEEESCGGGTHHHHHHHHHHTTCCEEESSC
T ss_pred EcCChHHHHHHHHHHHHHHHHhc---CCChhheEEEeCChHHHHHHHHHHHHHcCCCEEECCC
Confidence 33445555666666665544311 123445888888874 788899999999988776544
No 472
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=71.77 E-value=1.9 Score=41.68 Aligned_cols=18 Identities=33% Similarity=0.423 Sum_probs=15.5
Q ss_pred CCCEEEEccCCCchhHHh
Q 013858 158 GRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~ 175 (435)
.+++++.||+|+|||+.+
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 467999999999999843
No 473
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=71.69 E-value=1.4 Score=37.67 Aligned_cols=22 Identities=14% Similarity=0.196 Sum_probs=15.9
Q ss_pred EEEEccCCCchhHHhHHHHHHHHH
Q 013858 161 LLGCAETGSGKTAAFTIPMIQHCV 184 (435)
Q Consensus 161 vii~~~TGsGKT~~~~~~~l~~~~ 184 (435)
+++.|+.|||||+. +-.|...+
T Consensus 3 I~i~G~~GsGKsTl--~~~L~~~l 24 (214)
T 1gtv_A 3 IAIEGVDGAGKRTL--VEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEHHHH--HHHHHHHH
T ss_pred EEEEcCCCCCHHHH--HHHHHHHH
Confidence 78999999999984 44444333
No 474
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=71.57 E-value=1.7 Score=37.28 Aligned_cols=17 Identities=24% Similarity=0.153 Sum_probs=14.3
Q ss_pred CCEEEEccCCCchhHHh
Q 013858 159 RDLLGCAETGSGKTAAF 175 (435)
Q Consensus 159 ~~vii~~~TGsGKT~~~ 175 (435)
..+++.|+.|||||++.
T Consensus 5 ~~I~i~G~~GSGKST~~ 21 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVA 21 (218)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35889999999999843
No 475
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=71.45 E-value=6.3 Score=38.00 Aligned_cols=70 Identities=13% Similarity=0.046 Sum_probs=46.2
Q ss_pred CCeEEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHHHhCCCcEEEECcHHHHHHHHcCCCCCCCceEE
Q 013858 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSELRGGVSIVVATPGRFLDHLQQGNTSLSRVSFV 273 (435)
Q Consensus 194 ~~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~T~~~l~~~l~~~~~~l~~~~~i 273 (435)
+.++||.+|++.-+..+++.+++. ++++..++|.........-..+..+|+|+|. .+ ...+++. +++|
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~-----~~~v~~lhg~~R~~~~~~F~~g~~~vLVaT~-----v~-e~GiDip-v~~V 244 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA-----GKSVVVLNRKTFEREYPTIKQKKPDFILATD-----IA-EMGANLC-VERV 244 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT-----TCCEEECCSSSCC--------CCCSEEEESS-----ST-TCCTTCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc-----CCCEEEecchhHHHHHhhhcCCCceEEEECC-----hh-heeeccC-ceEE
Confidence 467999999999988888877764 4678888884432222222245679999995 22 3366777 8887
Q ss_pred EE
Q 013858 274 IL 275 (435)
Q Consensus 274 Ii 275 (435)
|.
T Consensus 245 I~ 246 (440)
T 1yks_A 245 LD 246 (440)
T ss_dssp EE
T ss_pred Ee
Confidence 73
No 476
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=71.08 E-value=1.9 Score=39.25 Aligned_cols=23 Identities=39% Similarity=0.502 Sum_probs=18.1
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHH
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQ 181 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~ 181 (435)
.|.-+.+.||.|+|||+ ++-++.
T Consensus 63 ~Ge~~~i~G~NGsGKST--Llk~l~ 85 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTS--LLMMIM 85 (290)
T ss_dssp TTCEEEEEESTTSSHHH--HHHHHT
T ss_pred CCCEEEEECCCCCcHHH--HHHHHh
Confidence 56779999999999998 444443
No 477
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=70.98 E-value=1.8 Score=38.09 Aligned_cols=18 Identities=22% Similarity=0.198 Sum_probs=15.1
Q ss_pred CCCEEEEccCCCchhHHh
Q 013858 158 GRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~ 175 (435)
+..+++.|+.|||||+.+
T Consensus 29 ~~~I~l~G~~GsGKsT~a 46 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQS 46 (243)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 346999999999999854
No 478
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=70.89 E-value=1.9 Score=36.52 Aligned_cols=16 Identities=19% Similarity=0.254 Sum_probs=13.8
Q ss_pred CEEEEccCCCchhHHh
Q 013858 160 DLLGCAETGSGKTAAF 175 (435)
Q Consensus 160 ~vii~~~TGsGKT~~~ 175 (435)
.+.++|..|||||++.
T Consensus 14 iIgltG~~GSGKSTva 29 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVC 29 (192)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4889999999999854
No 479
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=70.59 E-value=4.4 Score=37.16 Aligned_cols=25 Identities=24% Similarity=0.146 Sum_probs=18.5
Q ss_pred HHHHHhc-----CCCEEEEccCCCchhHHh
Q 013858 151 AMPVALS-----GRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 151 ~i~~~~~-----~~~vii~~~TGsGKT~~~ 175 (435)
.+..++. |.-+++.|++|+|||+.+
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la 115 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIM 115 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHH
Confidence 4555553 456999999999999743
No 480
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=70.47 E-value=2.4 Score=37.21 Aligned_cols=26 Identities=19% Similarity=0.051 Sum_probs=18.4
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHH
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQHCV 184 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~~~ 184 (435)
.|.-+-|.||.|||||+. +-++..+.
T Consensus 24 ~g~iigI~G~~GsGKSTl--~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTV--CEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHH--HHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHH--HHHHHHHh
Confidence 445688999999999984 44444433
No 481
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=70.47 E-value=4.4 Score=34.79 Aligned_cols=20 Identities=20% Similarity=0.223 Sum_probs=16.2
Q ss_pred hcCCCEEEEccCCCchhHHh
Q 013858 156 LSGRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 156 ~~~~~vii~~~TGsGKT~~~ 175 (435)
+.|.-+++.|+.|+|||+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~ 23 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNR 23 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHH
Confidence 35677999999999999843
No 482
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=70.35 E-value=7.1 Score=40.45 Aligned_cols=97 Identities=20% Similarity=0.256 Sum_probs=51.7
Q ss_pred cccCCCHHH-HHHHHHHcCceEEecCCCCCCCCCCCCcccCCC-CHHHHHHHHHCCC--CCCc--HHHHHHHHHHh---c
Q 013858 87 RVLRFNPEQ-IEEVRLRLNVDVTVASGSVPAPAPIESFTDMCL-HPSIMKDIEFHEY--TRPT--SIQAQAMPVAL---S 157 (435)
Q Consensus 87 ~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l-~~~l~~~l~~~~~--~~p~--~~Q~~~i~~~~---~ 157 (435)
.+...++.. ...++.++......+-.+ ++.-.+++|..+++ .+..++....... ..|. .+=..|+..++ .
T Consensus 93 ~L~~l~E~svL~nL~~Ry~~~~IYTy~G-~iLvavNPyk~l~iY~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~ 171 (770)
T 1w9i_A 93 ELSYLNEPAVFHNLRVRYNQDLIYTYSG-LFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQ 171 (770)
T ss_dssp GCSCCCHHHHHHHHHHHHHTTCCEEEET-TEEEEECCSSCCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHCC
T ss_pred hhccCCHHHHHHHHHHHHhcCCceeccC-ceeEEecCCccccCCCHHHHHHhcCCCcCCCCccHHHHHHHHHHHHHhhcC
Confidence 444555543 456666654332211111 33334556776664 4555544433322 2233 34456666665 3
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHh
Q 013858 158 GRDLLGCAETGSGKTAAFTIPMIQHCVA 185 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~~~~~l~~~~~ 185 (435)
++.+||.|+.|+|||.+. --+++++..
T Consensus 172 nQsIiisGESGAGKTe~t-K~i~~yla~ 198 (770)
T 1w9i_A 172 NQSLLITGESGAGKTENT-KKVIQYLAS 198 (770)
T ss_dssp CEEEEEECSTTSSHHHHH-HHHHHHHHH
T ss_pred CcEEEEecCCCCcchHHH-HHHHHHHHH
Confidence 456999999999999875 334455443
No 483
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=70.31 E-value=2.5 Score=37.20 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=16.7
Q ss_pred CCEEEEccCCCchhHHhHHHHHHH
Q 013858 159 RDLLGCAETGSGKTAAFTIPMIQH 182 (435)
Q Consensus 159 ~~vii~~~TGsGKT~~~~~~~l~~ 182 (435)
..+.+.||.|+|||+ ++-++.-
T Consensus 25 e~~~liG~nGsGKST--Ll~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSV--FLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHH--HHHHHHT
T ss_pred EEEEEECCCCCCHHH--HHHHHhC
Confidence 457899999999998 4555444
No 484
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=70.23 E-value=2.5 Score=42.53 Aligned_cols=25 Identities=20% Similarity=0.402 Sum_probs=19.5
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHH
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQHC 183 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~~ 183 (435)
.|..+.++||+|+|||+ ++-++..+
T Consensus 368 ~G~~~~ivG~sGsGKST--ll~~l~g~ 392 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKST--IANLFTRF 392 (582)
T ss_pred CCCEEEEECCCCCCHHH--HHHHHhcC
Confidence 67889999999999998 45555443
No 485
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=70.22 E-value=4.6 Score=32.26 Aligned_cols=36 Identities=17% Similarity=0.151 Sum_probs=31.0
Q ss_pred CCcEEEEeCchHHHHHHHHHHHhCCC-cEEEecCCCC
Q 013858 374 FPLTIVFVERKTRCDEVSEALVAEGL-HAVALHGGRN 409 (435)
Q Consensus 374 ~~~~lVF~~~~~~~~~l~~~L~~~~~-~v~~lh~~~~ 409 (435)
..+++|||.+-..+...+..|+..|+ +|..|.||+.
T Consensus 80 ~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 80 ERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp -CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 34699999988888899999999998 6999999984
No 486
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=70.12 E-value=2.7 Score=36.60 Aligned_cols=26 Identities=27% Similarity=0.218 Sum_probs=19.0
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHHHH
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQHCV 184 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~~~ 184 (435)
.|.-+++.|+.|+|||+ +...+...+
T Consensus 25 ~g~~i~i~G~~GsGKsT--~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTT--VINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHH--HHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHH--HHHHHHHHH
Confidence 45679999999999998 444444433
No 487
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=70.10 E-value=7.1 Score=40.57 Aligned_cols=97 Identities=15% Similarity=0.167 Sum_probs=52.7
Q ss_pred cccCCCHHH-HHHHHHHcCceEEecCCCCCCCCCCCCcccCCC-CHHHHHHHHHCCC--CCC--cHHHHHHHHHHh---c
Q 013858 87 RVLRFNPEQ-IEEVRLRLNVDVTVASGSVPAPAPIESFTDMCL-HPSIMKDIEFHEY--TRP--TSIQAQAMPVAL---S 157 (435)
Q Consensus 87 ~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l-~~~l~~~l~~~~~--~~p--~~~Q~~~i~~~~---~ 157 (435)
.+..+++.. ...++.++......+-.+ ++.-.+++|..+++ .+..++....... ..| +.+=..|+..++ .
T Consensus 92 ~L~~LnE~svL~nL~~Ry~~~~IYTy~G-~iLvavNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~ 170 (783)
T 4db1_A 92 MLTFLHEPAVLYNLKDRYGSWMIYTYSG-LFCVTVNPYKWLPVYTPEVVAAYRGKKRSEAPPHIFSISDNAYQYMLTDRE 170 (783)
T ss_dssp GCSCCSHHHHHHHHHHHHHTTCCEEEET-TEEEEECCSSCCSCSSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTC
T ss_pred ccccccHHHHHHHHHHHhcCCceEEecC-ceeEecCCCccCCCCCHHHHHHhcCCCcCCCCchhhHHHHHHHHHHHhhCC
Confidence 445555553 456666654332211111 23334556777765 4455544433222 223 345556666665 3
Q ss_pred CCCEEEEccCCCchhHHhHHHHHHHHHh
Q 013858 158 GRDLLGCAETGSGKTAAFTIPMIQHCVA 185 (435)
Q Consensus 158 ~~~vii~~~TGsGKT~~~~~~~l~~~~~ 185 (435)
++.+||.|+.|+|||.+. --+++++..
T Consensus 171 nQsIiiSGESGAGKTe~t-K~im~yla~ 197 (783)
T 4db1_A 171 NQSILITGESGAGKTVNT-KRVIQYFAV 197 (783)
T ss_dssp CEEEEEECSTTSSHHHHH-HHHHHHHHH
T ss_pred CceEEEeCCCCCCCchHH-HHHHHhhhh
Confidence 456999999999999875 344555543
No 488
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=70.05 E-value=13 Score=44.85 Aligned_cols=54 Identities=11% Similarity=0.150 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHH----HhcCCCEEEEccCCCchhHHhHHHHHHHHH
Q 013858 128 LHPSIMKDIEFHEYTRPTSIQAQAMPV----ALSGRDLLGCAETGSGKTAAFTIPMIQHCV 184 (435)
Q Consensus 128 l~~~l~~~l~~~~~~~p~~~Q~~~i~~----~~~~~~vii~~~TGsGKT~~~~~~~l~~~~ 184 (435)
|...+.+.+..+|+. |.+.+..-+-. +...+.++++||||+|||+++- +|...+
T Consensus 873 l~~ai~~~~~~~~L~-~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~--~L~~al 930 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHLV-TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWE--VYLEAI 930 (3245)
T ss_dssp HHHHHHHHHHHTTCC-CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHH--HHHHHH
T ss_pred HHHHHHHHHHHcCCc-cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHH--HHHHHH
Confidence 345666777788875 45555443333 2345669999999999999653 444433
No 489
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=69.76 E-value=3.1 Score=31.18 Aligned_cols=38 Identities=13% Similarity=0.182 Sum_probs=32.5
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhCCC-cEEEecCCCCH
Q 013858 373 PFPLTIVFVERKTRCDEVSEALVAEGL-HAVALHGGRNQ 410 (435)
Q Consensus 373 ~~~~~lVF~~~~~~~~~l~~~L~~~~~-~v~~lh~~~~~ 410 (435)
+..+++|||.+-..+...+..|+..|+ ++..+.||+..
T Consensus 57 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~ 95 (108)
T 1gmx_A 57 FDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEA 95 (108)
T ss_dssp TTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHHH
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHHH
Confidence 345699999998899999999999998 58899999754
No 490
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=69.69 E-value=7 Score=40.79 Aligned_cols=53 Identities=13% Similarity=-0.051 Sum_probs=41.9
Q ss_pred CCcEEEEeCchHHHHHHHHHHHh----CCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcC
Q 013858 374 FPLTIVFVERKTRCDEVSEALVA----EGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSY 432 (435)
Q Consensus 374 ~~~~lVF~~~~~~~~~l~~~L~~----~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~ 432 (435)
+.+++|.++++.-|.+.++.+.. .|+.+..+.|+++..+|.... .+.|+|+|+
T Consensus 115 g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTp 171 (853)
T 2fsf_A 115 GKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTN 171 (853)
T ss_dssp SSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEH
T ss_pred CCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECC
Confidence 34699999999988888777654 489999999999976555432 379999996
No 491
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=69.48 E-value=2.7 Score=39.46 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=18.7
Q ss_pred cCCCEEEEccCCCchhHHhHHHHHHH
Q 013858 157 SGRDLLGCAETGSGKTAAFTIPMIQH 182 (435)
Q Consensus 157 ~~~~vii~~~TGsGKT~~~~~~~l~~ 182 (435)
.|.-+.+.||.|+|||+ ++-++.-
T Consensus 29 ~Ge~~~llGpsGsGKST--LLr~iaG 52 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTT--LLRCLAG 52 (359)
T ss_dssp TTCEEEEEESTTSSHHH--HHHHHHT
T ss_pred CCCEEEEECCCCchHHH--HHHHHhc
Confidence 56778999999999998 4555544
No 492
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=69.47 E-value=2.5 Score=37.78 Aligned_cols=32 Identities=22% Similarity=0.170 Sum_probs=22.6
Q ss_pred CCceEEEEecCCcccCCCCHHHHHHHHHhCCC
Q 013858 268 SRVSFVILDEADRMLDMGFEPQIREVMQNLPD 299 (435)
Q Consensus 268 ~~~~~iIiDEah~~~~~~~~~~i~~i~~~~~~ 299 (435)
.+-+++++||--.-+|......+..++..+..
T Consensus 145 ~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~ 176 (263)
T 2pjz_A 145 SQPEIVGLDEPFENVDAARRHVISRYIKEYGK 176 (263)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS
T ss_pred hCCCEEEEECCccccCHHHHHHHHHHHHHhcC
Confidence 45578888888776676566677777776654
No 493
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=69.27 E-value=9.3 Score=32.21 Aligned_cols=38 Identities=18% Similarity=0.294 Sum_probs=22.8
Q ss_pred EEEEccCCCchhHHhHHHHHHHHHhcCCCCCCCCCeEEEEc-cChhh
Q 013858 161 LLGCAETGSGKTAAFTIPMIQHCVAQTPVGRGDGPLALVLA-PTREL 206 (435)
Q Consensus 161 vii~~~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~lil~-P~r~l 206 (435)
+++.|.-|||||+ ++-.+...+... |..++++- |....
T Consensus 3 I~~EG~DGsGKsT--q~~~L~~~L~~~------g~~v~~treP~~t~ 41 (197)
T 3hjn_A 3 ITFEGIDGSGKST--QIQLLAQYLEKR------GKKVILKREPGGTE 41 (197)
T ss_dssp EEEECSTTSSHHH--HHHHHHHHHHHT------TCCEEEEESSCSSH
T ss_pred EEEECCCCCCHHH--HHHHHHHHHHHC------CCcEEEEECCCCCc
Confidence 5688999999999 455554433321 33454443 76533
No 494
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=69.22 E-value=9.1 Score=34.74 Aligned_cols=53 Identities=13% Similarity=0.168 Sum_probs=41.5
Q ss_pred CcEEEEeCchHHHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcC
Q 013858 375 PLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVFSY 432 (435)
Q Consensus 375 ~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~ 432 (435)
.++||.++++.-+.++++.+++. +..+..+||+.+..++... +. ..+|+|+|.
T Consensus 57 ~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~i~v~T~ 113 (337)
T 2z0m_A 57 MKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINR---VR--NADIVVATP 113 (337)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHH---HT--TCSEEEECH
T ss_pred CCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhh---cC--CCCEEEECH
Confidence 35999999999999999998753 5789999999987654432 22 378999984
No 495
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=69.21 E-value=3.1 Score=39.03 Aligned_cols=19 Identities=37% Similarity=0.504 Sum_probs=15.7
Q ss_pred cCCC--EEEEccCCCchhHHh
Q 013858 157 SGRD--LLGCAETGSGKTAAF 175 (435)
Q Consensus 157 ~~~~--vii~~~TGsGKT~~~ 175 (435)
.|.+ ++.-|+||||||.+.
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEE
Confidence 4776 689999999999864
No 496
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=68.88 E-value=7.8 Score=40.37 Aligned_cols=95 Identities=12% Similarity=0.220 Sum_probs=53.2
Q ss_pred cccCCCHHH-HHHHHHHc-C--ceEEecCCCCCCCCCCCCcccCCC-CHHHHHHHHHCCC--CCC--cHHHHHHHHHHh-
Q 013858 87 RVLRFNPEQ-IEEVRLRL-N--VDVTVASGSVPAPAPIESFTDMCL-HPSIMKDIEFHEY--TRP--TSIQAQAMPVAL- 156 (435)
Q Consensus 87 ~~~~~~~~~-~~~~~~~~-~--~~v~~~~~~~~~~~~~~~~~~~~l-~~~l~~~l~~~~~--~~p--~~~Q~~~i~~~~- 156 (435)
.+...++.. ...++.++ . .-.+... ++.-.+++|..+++ .+..++....... ..| +.+=..|+..++
T Consensus 76 ~L~~l~E~svL~nL~~Ry~~~~~IYTy~G---~iLiavNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~ 152 (795)
T 1w7j_A 76 ALSYLHEPAVLHNLKVRFIDSKLIYTYCG---IVLVAINPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMAR 152 (795)
T ss_dssp TCSCCSHHHHHHHHHHHHHHHCCCEEEET---TEEEEECCSSCCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHH
T ss_pred hhhcccHHHHHHHHHHHHHhcccchhccC---cceEEecCccccCcCCHHHHHHHcCCCccCCCccHhHHHHHHHHHhHh
Confidence 445555553 46677776 3 2222221 33344556777764 4555554433322 233 344456666665
Q ss_pred --cCCCEEEEccCCCchhHHhHHHHHHHHHh
Q 013858 157 --SGRDLLGCAETGSGKTAAFTIPMIQHCVA 185 (435)
Q Consensus 157 --~~~~vii~~~TGsGKT~~~~~~~l~~~~~ 185 (435)
.++.+||.|+.|+|||.+. --++.++..
T Consensus 153 ~~~nQsIiisGESGAGKTe~t-K~i~~yla~ 182 (795)
T 1w7j_A 153 DERNQSIIVSGESGAGKTVSA-KYAMRYFAT 182 (795)
T ss_dssp HTCCEEEEEECSTTSSHHHHH-HHHHHHHHH
T ss_pred cCCCeEEEEeCCCCCCcchHH-HHHHHHHHh
Confidence 3456999999999999875 445555544
No 497
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=68.78 E-value=9 Score=39.98 Aligned_cols=53 Identities=11% Similarity=0.003 Sum_probs=42.4
Q ss_pred CCcEEEEeCchHHHHHHHHHHHh----CCCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcC
Q 013858 374 FPLTIVFVERKTRCDEVSEALVA----EGLHAVALHGGRNQSDRESALRDFRNGSTNILVFSY 432 (435)
Q Consensus 374 ~~~~lVF~~~~~~~~~l~~~L~~----~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~ 432 (435)
+.+++|.++++.-|.+.++.+.. .|+.+..+.|+++..+|.... .+.|+|+|+
T Consensus 124 g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTp 180 (844)
T 1tf5_A 124 GKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTN 180 (844)
T ss_dssp SSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEH
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECc
Confidence 34699999999998888777754 589999999999987665432 378999996
No 498
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=68.71 E-value=2 Score=50.99 Aligned_cols=20 Identities=40% Similarity=0.615 Sum_probs=17.3
Q ss_pred hcCCCEEEEccCCCchhHHh
Q 013858 156 LSGRDLLGCAETGSGKTAAF 175 (435)
Q Consensus 156 ~~~~~vii~~~TGsGKT~~~ 175 (435)
..++.++++||||+|||+.+
T Consensus 1265 ~~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1265 NSKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HHTCEEEEECSTTSSHHHHH
T ss_pred HCCCeEEEECCCCCCHHHHH
Confidence 36789999999999999754
No 499
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=68.66 E-value=44 Score=34.02 Aligned_cols=77 Identities=19% Similarity=0.254 Sum_probs=56.8
Q ss_pred CCeEEEEccChhhHHHHHHHHHHHhhcCCCceEEEEECCCCHHHHHHH---Hh-CCCcEEEECcHHHHHHHHcCCCCCCC
Q 013858 194 GPLALVLAPTRELAQQIEKEVKALSRSLDSFKTAIVVGGTNIAEQRSE---LR-GGVSIVVATPGRFLDHLQQGNTSLSR 269 (435)
Q Consensus 194 ~~~~lil~P~r~la~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~-~~~~I~v~T~~~l~~~l~~~~~~l~~ 269 (435)
+.++||.++++..+..+.+.+.+. ++.+..++|+....+.... +. +..+|+|+|. .+ ...+++..
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~~-----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~-----~l-~~GlDip~ 507 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVEH-----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN-----LL-REGLDIPE 507 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC-----CC-CTTCCCTT
T ss_pred CCEEEEEECCHHHHHHHHHHHHhc-----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccC-----hh-hcCccCCC
Confidence 568999999999888887777664 5677888887765554433 22 4579999994 22 44678889
Q ss_pred ceEEEEecCCcc
Q 013858 270 VSFVILDEADRM 281 (435)
Q Consensus 270 ~~~iIiDEah~~ 281 (435)
+++||+=+++..
T Consensus 508 v~lVI~~d~d~~ 519 (664)
T 1c4o_A 508 VSLVAILDADKE 519 (664)
T ss_dssp EEEEEETTTTSC
T ss_pred CCEEEEeCCccc
Confidence 999999888743
No 500
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=68.60 E-value=16 Score=33.45 Aligned_cols=55 Identities=18% Similarity=0.208 Sum_probs=42.8
Q ss_pred CCCcEEEEeCchHHHHHHHHHHHhC----CCcEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcC
Q 013858 373 PFPLTIVFVERKTRCDEVSEALVAE----GLHAVALHGGRNQSDRESALRDFRNGSTNILVFSY 432 (435)
Q Consensus 373 ~~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lh~~~~~~~R~~~~~~f~~g~~~VLVaT~ 432 (435)
++.++||.++++.-+.++++.++.. ++.+..++|+....++...+. ..+|+|+|.
T Consensus 73 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----~~~iiv~T~ 131 (367)
T 1hv8_A 73 NGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-----NANIVVGTP 131 (367)
T ss_dssp SSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-----TCSEEEECH
T ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-----CCCEEEecH
Confidence 4557999999999999999888763 678999999988655544332 578999984
Done!