BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013859
(435 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 105 bits (261), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 88/318 (27%), Positives = 136/318 (42%), Gaps = 48/318 (15%)
Query: 138 AMNTTKHLWAGAIAAMVSRTFVAPLERLKLEYMVRGEQKKL---------FELVKTIAAT 188
A++ K AG +AA +S+T VAP+ER+KL V+ K++ + V I
Sbjct: 4 ALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKE 63
Query: 189 QGLKGFWRGNLINILRTAPFKAVNFYAYDTYRKQLLRFSGNEETTNFERFIA-----GAA 243
QG FWRGNL N++R P +A+NF D Y++ L G + F R+ A G A
Sbjct: 64 QGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFL--GGVDRHKQFWRYFAGNLASGGA 121
Query: 244 AGITASVLCLPLDTIRTKIVAPGGEALG-----GVIGAFRYMIQNEGFFSLYKGLVPSIM 298
AG T+ PLD RT++ A G+ G+ + +++G LY+G S+
Sbjct: 122 AGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQ 181
Query: 299 SMAPSGAVFYGVYDILKSAYLHSPEGRKRIQKMNQHGEELTAFDQLELGPIRTLLYGXXX 358
+ A ++GVYD K L P+ N H I + +
Sbjct: 182 GIIIYRAAYFGVYDTAK-GMLPDPK--------NVH-------------IIVSWMIAQTV 219
Query: 359 XXXXXXXTYPFEVVRRRLQLQ-----VQATKLSAVGTFVKIVEQGGVPALYAGLIPSLLQ 413
+YPF+ VRRR+ +Q V + KI + G A + G ++L+
Sbjct: 220 TAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLR 279
Query: 414 VLPSAAISYFVYEFMKIV 431
+ A + E K V
Sbjct: 280 GMGGAFVLVLYDEIKKFV 297
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 85/193 (44%), Gaps = 15/193 (7%)
Query: 144 HLWAGAIAAMVSRTFVAPLERLKLEYMVRGEQ------KKLFELVKTIAATQGLKGFWRG 197
L AG+ ++ P + +K+ + + + E KTIA +G++G W+G
Sbjct: 107 RLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKG 166
Query: 198 NLINILRTAPFKAVNFYAYDTYRKQLLRFSGNEETTNFE-RFIAGAAAGITASVLCLPLD 256
N+ R A YD + LL+ N T + F + AG +V+ P+D
Sbjct: 167 TSPNVARNAIVNCAELVTYDLIKDTLLK--ANLMTDDLPCHFTSAFGAGFCTTVIASPVD 224
Query: 257 TIRTKIVAPGGEALGGVIGAFRY---MIQNEGFFSLYKGLVPSIMSMAPSGAVFYGVYDI 313
++T+ + ALG A M++ EG + YKG +PS + + V + Y+
Sbjct: 225 VVKTRYM---NSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQ 281
Query: 314 LKSAYLHSPEGRK 326
LK A + + + R+
Sbjct: 282 LKRALMAAYQSRE 294
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/305 (21%), Positives = 116/305 (38%), Gaps = 39/305 (12%)
Query: 141 TTKHLWAGAIAAMVSRTFVAPLERLKLEYMVRGEQKKLFEL------------VKTIAAT 188
T K L AG AA ++ PL+ K+ ++GE + L + T+ T
Sbjct: 2 TVKFLGAG-TAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRT 60
Query: 189 QGLKGFWRGNLINILRTAPFKAVNFYAYDTYRKQLLRFSGNEETTNFERFIAGAAAGITA 248
+G + + G + + R F +V YD+ ++ + G+E R +AG+ G A
Sbjct: 61 EGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTK--GSEHAGIGSRLLAGSTTGALA 118
Query: 249 SVLCLPLDTIRTKIVAP----GGEALGGVIGAFRYMIQNEGFFSLYKGLVPSIMSMAPSG 304
+ P D ++ + A GG + A++ + + EG L+KG P++ A
Sbjct: 119 VAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVN 178
Query: 305 AVFYGVYDILKSAYLHSPEGRKRIQKMNQHGEELTAFDQLELGPIRTLLYGXXXXXXXXX 364
YD++K L K N ++L G
Sbjct: 179 CAELVTYDLIKDTLL----------KANLMTDDLPCHFTSAFG----------AGFCTTV 218
Query: 365 XTYPFEVVRRRLQLQVQATKLSAVGTFVKIVEQGGVPALYAGLIPSLLQVLPSAAISYFV 424
P +VV+ R SA + ++ + G A Y G +PS L++ + +
Sbjct: 219 IASPVDVVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVT 278
Query: 425 YEFMK 429
YE +K
Sbjct: 279 YEQLK 283
>pdb|1GPH|1 Chain 1, Structure Of The Allosteric Regulatory Enzyme Of Purine
Biosynthesis
pdb|1GPH|2 Chain 2, Structure Of The Allosteric Regulatory Enzyme Of Purine
Biosynthesis
pdb|1GPH|3 Chain 3, Structure Of The Allosteric Regulatory Enzyme Of Purine
Biosynthesis
pdb|1GPH|4 Chain 4, Structure Of The Allosteric Regulatory Enzyme Of Purine
Biosynthesis
Length = 465
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 65 VFGIWGRKRSVAATNSGLFLSVSLRNDGLLRESNFCLVQNGDKSSDDMPKFEPGNVAVEA 124
VFGIWG + + T GL SL++ G +E + +G+K + + + E
Sbjct: 3 VFGIWGHEEAPQITYYGLH---SLQHRG--QEGAGIVATDGEK----LTAHKGQGLITEV 53
Query: 125 FEKKRKSRVRGRGAMNTTKHLWAGA 149
F+ S+V+G+GA+ ++ AG
Sbjct: 54 FQNGELSKVKGKGAIGHVRYATAGG 78
>pdb|1AO0|A Chain A, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase From B. Subtilis Complexed With Adp And
Gmp
pdb|1AO0|B Chain B, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase From B. Subtilis Complexed With Adp And
Gmp
pdb|1AO0|C Chain C, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase From B. Subtilis Complexed With Adp And
Gmp
pdb|1AO0|D Chain D, Glutamine Phosphoribosylpyrophosphate (Prpp)
Amidotransferase From B. Subtilis Complexed With Adp And
Gmp
Length = 459
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 65 VFGIWGRKRSVAATNSGLFLSVSLRNDGLLRESNFCLVQNGDKSSDDMPKFEPGNVAVEA 124
VFGIWG + + T GL SL++ G +E + +G+K + + + E
Sbjct: 3 VFGIWGHEEAPQITYYGLH---SLQHRG--QEGAGIVATDGEK----LTAHKGQGLITEV 53
Query: 125 FEKKRKSRVRGRGAMNTTKHLWAGA 149
F+ S+V+G+GA+ ++ AG
Sbjct: 54 FQNGELSKVKGKGAIGHVRYATAGG 78
>pdb|3IPI|A Chain A, Crystal Structure Of A Geranyltranstransferase From The
Methanosarcina Mazei
Length = 295
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 23/45 (51%)
Query: 302 PSGAVFYGVYDILKSAYLHSPEGRKRIQKMNQHGEELTAFDQLEL 346
PSGA+ G Y I KS SP G K IQ + G + + L+L
Sbjct: 103 PSGALLCGDYLIAKSIAFISPYGEKVIQDFGKAGXDXAEGEVLDL 147
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,285,405
Number of Sequences: 62578
Number of extensions: 425919
Number of successful extensions: 782
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 763
Number of HSP's gapped (non-prelim): 14
length of query: 435
length of database: 14,973,337
effective HSP length: 102
effective length of query: 333
effective length of database: 8,590,381
effective search space: 2860596873
effective search space used: 2860596873
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)