Query 013859
Match_columns 435
No_of_seqs 368 out of 2045
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 18:26:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013859.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013859hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1okc_A ADP, ATP carrier protei 100.0 2.1E-54 7E-59 419.9 27.9 271 139-432 5-297 (297)
2 2lck_A Mitochondrial uncouplin 100.0 6E-55 2.1E-59 424.9 23.7 269 143-433 3-287 (303)
3 2lck_A Mitochondrial uncouplin 100.0 1.2E-36 4E-41 295.9 14.4 220 90-320 63-288 (303)
4 1okc_A ADP, ATP carrier protei 100.0 1.8E-34 6.1E-39 279.6 17.2 186 232-433 5-202 (297)
5 3tgu_G UQCRQ, mitochondrial ub 21.5 73 0.0025 23.4 3.1 34 399-432 33-66 (81)
6 1pp9_G Ubiquinol-cytochrome C 12.6 1.4E+02 0.0046 21.9 2.7 34 399-432 33-66 (81)
7 3vjj_A P9-1; 3.00A {Rice black 12.5 87 0.003 28.6 1.9 44 361-412 274-317 (368)
8 2acm_A Mucin-1; auto-catalytic 9.7 55 0.0019 22.4 -0.3 19 272-290 41-59 (66)
9 3cx5_H Cytochrome B-C1 complex 8.8 1.9E+02 0.0065 21.8 2.3 34 399-432 43-76 (93)
10 2a3d_A Protein (de novo three- 7.1 3.2E+02 0.011 18.3 2.6 14 161-174 10-23 (73)
No 1
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=2.1e-54 Score=419.94 Aligned_cols=271 Identities=30% Similarity=0.472 Sum_probs=236.4
Q ss_pred CchHHHHHHHHHHHHHHHhhhccHHHHHHHHHhcC---------CCCCHHHHHHHHHHhcCccccccccHHHHHHHHHHH
Q 013859 139 MNTTKHLWAGAIAAMVSRTFVAPLERLKLEYMVRG---------EQKKLFELVKTIAATQGLKGFWRGNLINILRTAPFK 209 (435)
Q Consensus 139 ~~~~~~~~aG~~ag~~~~~i~~Pld~iK~r~Q~~~---------~~~~~~~~~~~i~~~eG~~glyrG~~~~~~~~~~~~ 209 (435)
.+.+.++++|++||+++.++++|+|+||+|+|++. .+++.++++++|+++||++|||||+.+++++.++++
T Consensus 5 ~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~ 84 (297)
T 1okc_A 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQ 84 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHH
Confidence 45678999999999999999999999999999864 368999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCC---chHHHHHHHHHHHHHHHHhhccHHHHhhhhccCCC-----CCCCcHHHHHHHHH
Q 013859 210 AVNFYAYDTYRKQLLRFSGNEET---TNFERFIAGAAAGITASVLCLPLDTIRTKIVAPGG-----EALGGVIGAFRYMI 281 (435)
Q Consensus 210 ~~~f~~y~~~k~~l~~~~~~~~~---~~~~~~~ag~~ag~~a~~v~~PldviktRlq~~~~-----~~~~~~~~~~~~I~ 281 (435)
+++|.+||.+|+.+....+.... .....+++|++||++++++++|+|+||+|+|++.. ..|.++++++++|+
T Consensus 85 ~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~ 164 (297)
T 1okc_A 85 ALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIF 164 (297)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHH
Confidence 99999999999965432222111 24578999999999999999999999999998743 35889999999999
Q ss_pred HhhCcccccccchHHHHhhhhhHHHHHHHHHHHHHHhccCCcchhhhhhccccCcccccccccCcchHHHHHHHhHHhhh
Q 013859 282 QNEGFFSLYKGLVPSIMSMAPSGAVFYGVYDILKSAYLHSPEGRKRIQKMNQHGEELTAFDQLELGPIRTLLYGAIAGAC 361 (435)
Q Consensus 282 r~eG~~glyrG~~~~llr~~~~~~i~f~~ye~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~ 361 (435)
++||++|||||+.++++|.+|+.+++|.+||.+|+.+.+. ...+.+..+++|++||++
T Consensus 165 ~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~----------------------~~~~~~~~~~~g~~ag~~ 222 (297)
T 1okc_A 165 KSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP----------------------KNVHIIVSWMIAQTVTAV 222 (297)
T ss_dssp HHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG----------------------GCSCHHHHHHHHHHHHHH
T ss_pred HhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC----------------------CCccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999864321 013456789999999999
Q ss_pred hhcccccHHHHHHHHHhccc-----cCCCCHHHHHHHHHHhcChhhcccChHHHHHHHhhhhhhHHHHHHHHHHhh
Q 013859 362 AEAATYPFEVVRRRLQLQVQ-----ATKLSAVGTFVKIVEQGGVPALYAGLIPSLLQVLPSAAISYFVYEFMKIVF 432 (435)
Q Consensus 362 a~~~t~P~DvIktrmq~~~~-----~~~~~~~~~~~~i~~~eGi~glyrG~~~~l~r~~p~~~i~f~~ye~~k~~l 432 (435)
+++++||+||||+|||++.. ..|.+.++|+++|+++||++|||||+.|+++|. +..+++|.+||.+|+++
T Consensus 223 a~~~t~P~dvvktr~q~~~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 223 AGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp HHHHHHHHHHHHHHHHTTTTCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHHHHHHHHHHTC----
T ss_pred HHHhcChHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhh-ccceeeehHHHHHHhhC
Confidence 99999999999999998753 257899999999999999999999999999996 56899999999998764
No 2
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=6e-55 Score=424.89 Aligned_cols=269 Identities=21% Similarity=0.348 Sum_probs=245.3
Q ss_pred HHHHHHHHHHHHHHhhhccHHHHHHHHHhcC------------CCCCHHHHHHHHHHhcCccccccccHHHHHHHHHHHH
Q 013859 143 KHLWAGAIAAMVSRTFVAPLERLKLEYMVRG------------EQKKLFELVKTIAATQGLKGFWRGNLINILRTAPFKA 210 (435)
Q Consensus 143 ~~~~aG~~ag~~~~~i~~Pld~iK~r~Q~~~------------~~~~~~~~~~~i~~~eG~~glyrG~~~~~~~~~~~~~ 210 (435)
.++++|++||+++.++++|+|+||+|+|++. .++++++++++|+++||+++||||+.+++++.+++.+
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 82 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFAS 82 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHH
Confidence 3689999999999999999999999999864 3678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHHHHhhccHHHHhhhhccCCC----CCCCcHHHHHHHHHHhhCc
Q 013859 211 VNFYAYDTYRKQLLRFSGNEETTNFERFIAGAAAGITASVLCLPLDTIRTKIVAPGG----EALGGVIGAFRYMIQNEGF 286 (435)
Q Consensus 211 ~~f~~y~~~k~~l~~~~~~~~~~~~~~~~ag~~ag~~a~~v~~PldviktRlq~~~~----~~~~~~~~~~~~I~r~eG~ 286 (435)
++|.+||.+|+.+.+.. +..+....+++|++||+++.++++|+|+||+|+|++.. ..|.+.++++++|+++||+
T Consensus 83 i~f~~ye~~k~~~~~~~--~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~ 160 (303)
T 2lck_A 83 VRIGLYDSVKQFYTKGS--EHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGI 160 (303)
T ss_dssp HTTTHHHHHHHHHSCCC--SSCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHhcCC--cCCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcCh
Confidence 99999999999886531 24567889999999999999999999999999999753 3688999999999999999
Q ss_pred ccccccchHHHHhhhhhHHHHHHHHHHHHHHhccCCcchhhhhhccccCcccccccccCcchHHHHHHHhHHhhhhhccc
Q 013859 287 FSLYKGLVPSIMSMAPSGAVFYGVYDILKSAYLHSPEGRKRIQKMNQHGEELTAFDQLELGPIRTLLYGAIAGACAEAAT 366 (435)
Q Consensus 287 ~glyrG~~~~llr~~~~~~i~f~~ye~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~a~~~t 366 (435)
+|||||+.+++++.+|+.+++|.+||.+|+.+.+.. ....+.+..+++|++||+++++++
T Consensus 161 ~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~--------------------~~~~~~~~~~~~g~~ag~~~~~~~ 220 (303)
T 2lck_A 161 RGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKAN--------------------LMTDDLPCHFTSAFGAGFCTTVIA 220 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT--------------------SCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------------------CCCCchHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999998765321 012345678999999999999999
Q ss_pred ccHHHHHHHHHhccccCCCCHHHHHHHHHHhcChhhcccChHHHHHHHhhhhhhHHHHHHHHHHhhh
Q 013859 367 YPFEVVRRRLQLQVQATKLSAVGTFVKIVEQGGVPALYAGLIPSLLQVLPSAAISYFVYEFMKIVFK 433 (435)
Q Consensus 367 ~P~DvIktrmq~~~~~~~~~~~~~~~~i~~~eGi~glyrG~~~~l~r~~p~~~i~f~~ye~~k~~l~ 433 (435)
||+||||+|||++....|.+.++|+++|+++||++|||||+.|+++|.+|..+++|.+||.+|+.++
T Consensus 221 ~P~dvvktrlq~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~ 287 (303)
T 2lck_A 221 SPVDVVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALM 287 (303)
T ss_dssp HHHHHHHHHHTTCCSSSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred CHHHHHHHHHHhccccccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 9999999999998766789999999999999999999999999999999999999999999998874
No 3
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=1.2e-36 Score=295.90 Aligned_cols=220 Identities=20% Similarity=0.344 Sum_probs=186.8
Q ss_pred CCccccccccccccCCCCCCCCCCCCCCcchhHHHHHHHHhhhccCCCCCchHHHHHHHHHHHHHHHhhhccHHHHHHHH
Q 013859 90 NDGLLRESNFCLVQNGDKSSDDMPKFEPGNVAVEAFEKKRKSRVRGRGAMNTTKHLWAGAIAAMVSRTFVAPLERLKLEY 169 (435)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aG~~ag~~~~~i~~Pld~iK~r~ 169 (435)
..++|+|..+.+++........+ ..|+..+....+..+..+....+++|++||+++.++++|+|+||+|+
T Consensus 63 ~~glyrG~~~~l~~~~~~~~i~f----------~~ye~~k~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrl 132 (303)
T 2lck_A 63 PRSLYNGLVAGLQRQMSFASVRI----------GLYDSVKQFYTKGSEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRF 132 (303)
T ss_dssp HHHHHSSHHHHHHHHHHHHHHTT----------THHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHH----------HHHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 46788888887776544332222 23443333322221246778999999999999999999999999999
Q ss_pred HhcC------CCCCHHHHHHHHHHhcCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHHH
Q 013859 170 MVRG------EQKKLFELVKTIAATQGLKGFWRGNLINILRTAPFKAVNFYAYDTYRKQLLRFSGNEETTNFERFIAGAA 243 (435)
Q Consensus 170 Q~~~------~~~~~~~~~~~i~~~eG~~glyrG~~~~~~~~~~~~~~~f~~y~~~k~~l~~~~~~~~~~~~~~~~ag~~ 243 (435)
|++. .+++.++++++|+++||++|||||+.+++++.+++.+++|.+||.+|+.+.+.. ....+....+++|++
T Consensus 133 q~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~-~~~~~~~~~~~~g~~ 211 (303)
T 2lck_A 133 QAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKAN-LMTDDLPCHFTSAFG 211 (303)
T ss_dssp HHSCSCCCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT-SCCSCHHHHHHHHHH
T ss_pred hcccccCCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCchHHHHHHHHH
Confidence 9975 468999999999999999999999999999999999999999999999886532 234566788999999
Q ss_pred HHHHHHHhhccHHHHhhhhccCCCCCCCcHHHHHHHHHHhhCcccccccchHHHHhhhhhHHHHHHHHHHHHHHhcc
Q 013859 244 AGITASVLCLPLDTIRTKIVAPGGEALGGVIGAFRYMIQNEGFFSLYKGLVPSIMSMAPSGAVFYGVYDILKSAYLH 320 (435)
Q Consensus 244 ag~~a~~v~~PldviktRlq~~~~~~~~~~~~~~~~I~r~eG~~glyrG~~~~llr~~~~~~i~f~~ye~lk~~~~~ 320 (435)
||++++++++|+|+||+|+|++....|.++++|+++|+++||++|||||+.|+++|.+|..+++|.+||.+|+.+.+
T Consensus 212 ag~~~~~~~~P~dvvktrlq~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~ 288 (303)
T 2lck_A 212 AGFCTTVIASPVDVVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMA 288 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCSSSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHcCHHHHHHHHHHhccccccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987777999999999999999999999999999999999999999999999976643
No 4
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=1.8e-34 Score=279.65 Aligned_cols=186 Identities=21% Similarity=0.343 Sum_probs=162.5
Q ss_pred CchHHHHHHHHHHHHHHHHhhccHHHHhhhhccCCC-------CCCCcHHHHHHHHHHhhCcccccccchHHHHhhhhhH
Q 013859 232 TTNFERFIAGAAAGITASVLCLPLDTIRTKIVAPGG-------EALGGVIGAFRYMIQNEGFFSLYKGLVPSIMSMAPSG 304 (435)
Q Consensus 232 ~~~~~~~~ag~~ag~~a~~v~~PldviktRlq~~~~-------~~~~~~~~~~~~I~r~eG~~glyrG~~~~llr~~~~~ 304 (435)
.+.+..+++|++||+++.++++|+|+||+|+|++.. ..|.++++++++|+++||++|||||+.+.+++.+|..
T Consensus 5 ~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~ 84 (297)
T 1okc_A 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQ 84 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHH
Confidence 345678999999999999999999999999998742 3588999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCcchhhhhhccccCcccccccccCcchHHHHHHHhHHhhhhhcccccHHHHHHHHHhccc---
Q 013859 305 AVFYGVYDILKSAYLHSPEGRKRIQKMNQHGEELTAFDQLELGPIRTLLYGAIAGACAEAATYPFEVVRRRLQLQVQ--- 381 (435)
Q Consensus 305 ~i~f~~ye~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~a~~~t~P~DvIktrmq~~~~--- 381 (435)
+++|.+||.+|+.+....... +......+..+++|++||+++++++||+|+||+|||++..
T Consensus 85 ~~~f~~ye~~k~~~~~~~~~~----------------~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~ 148 (297)
T 1okc_A 85 ALNFAFKDKYKQIFLGGVDRH----------------KQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGA 148 (297)
T ss_dssp HHHHHHHHHHHHHHHTTCCTT----------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSST
T ss_pred HHHHHHHHHHHHHhccccCcc----------------cchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCC
Confidence 999999999998654321100 0111235678999999999999999999999999999753
Q ss_pred --cCCCCHHHHHHHHHHhcChhhcccChHHHHHHHhhhhhhHHHHHHHHHHhhh
Q 013859 382 --ATKLSAVGTFVKIVEQGGVPALYAGLIPSLLQVLPSAAISYFVYEFMKIVFK 433 (435)
Q Consensus 382 --~~~~~~~~~~~~i~~~eGi~glyrG~~~~l~r~~p~~~i~f~~ye~~k~~l~ 433 (435)
..|.+.++|+++|+++||++|||||+.|+++|.+|..++.|.+||.+|+.++
T Consensus 149 ~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~ 202 (297)
T 1okc_A 149 AQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLP 202 (297)
T ss_dssp TTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred cCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3578999999999999999999999999999999999999999999998763
No 5
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=21.49 E-value=73 Score=23.41 Aligned_cols=34 Identities=18% Similarity=0.455 Sum_probs=28.0
Q ss_pred ChhhcccChHHHHHHHhhhhhhHHHHHHHHHHhh
Q 013859 399 GVPALYAGLIPSLLQVLPSAAISYFVYEFMKIVF 432 (435)
Q Consensus 399 Gi~glyrG~~~~l~r~~p~~~i~f~~ye~~k~~l 432 (435)
|+...+|-+.-+++.++|...+.+.+|+..++..
T Consensus 33 ~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~n 66 (81)
T 3tgu_G 33 ALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEF 66 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHH
Confidence 5666667777889999999999999999887754
No 6
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=12.58 E-value=1.4e+02 Score=21.94 Aligned_cols=34 Identities=26% Similarity=0.500 Sum_probs=28.2
Q ss_pred ChhhcccChHHHHHHHhhhhhhHHHHHHHHHHhh
Q 013859 399 GVPALYAGLIPSLLQVLPSAAISYFVYEFMKIVF 432 (435)
Q Consensus 399 Gi~glyrG~~~~l~r~~p~~~i~f~~ye~~k~~l 432 (435)
|+...+|-+.-+++.++|...+.+.+|+..++..
T Consensus 33 ~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~ 66 (81)
T 1pp9_G 33 GIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEF 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHH
Confidence 5666777778888899999999999999887764
No 7
>3vjj_A P9-1; 3.00A {Rice black streaked dwarf virus}
Probab=12.52 E-value=87 Score=28.60 Aligned_cols=44 Identities=23% Similarity=0.403 Sum_probs=27.2
Q ss_pred hhhcccccHHHHHHHHHhccccCCCCHHHHHHHHHHhcChhhcccChHHHHH
Q 013859 361 CAEAATYPFEVVRRRLQLQVQATKLSAVGTFVKIVEQGGVPALYAGLIPSLL 412 (435)
Q Consensus 361 ~a~~~t~P~DvIktrmq~~~~~~~~~~~~~~~~i~~~eGi~glyrG~~~~l~ 412 (435)
++++=.||||.+|-.++.-- +....+.+.+.++| ||+-+...-+
T Consensus 274 LaTFdnypfdllRfqL~Sli-----stp~~I~e~i~K~G---LFk~it~~~~ 317 (368)
T 3vjj_A 274 LATFDNYPFDLLRFQLSSLI-----STPALIREKIAKEG---LFKIITSNTL 317 (368)
T ss_dssp HHHCTTCBHHHHHHHCSSCC-----CCCHHHHHHHHHSC---SEEECC----
T ss_pred eecCCCCCHHHHHHHhhhhc-----cChHHHHHHHHhcC---ceEEEecccc
Confidence 45667899999988776532 33466778888887 4444443333
No 8
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=9.74 E-value=55 Score=22.44 Aligned_cols=19 Identities=21% Similarity=0.427 Sum_probs=16.3
Q ss_pred cHHHHHHHHHHhhCccccc
Q 013859 272 GVIGAFRYMIQNEGFFSLY 290 (435)
Q Consensus 272 ~~~~~~~~I~r~eG~~gly 290 (435)
++.+.+.+||+++++.|++
T Consensus 41 ~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 41 DISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHccCCeeeee
Confidence 5778888999999999886
No 9
>3cx5_H Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.13.1 PDB: 1kb9_H* 1kyo_H* 1p84_H* 1ezv_G* 3cxh_H* 2ibz_G*
Probab=8.82 E-value=1.9e+02 Score=21.79 Aligned_cols=34 Identities=18% Similarity=0.153 Sum_probs=28.7
Q ss_pred ChhhcccChHHHHHHHhhhhhhHHHHHHHHHHhh
Q 013859 399 GVPALYAGLIPSLLQVLPSAAISYFVYEFMKIVF 432 (435)
Q Consensus 399 Gi~glyrG~~~~l~r~~p~~~i~f~~ye~~k~~l 432 (435)
|+...+|-+.-+++.++|...+.+.+|+..++..
T Consensus 43 ~i~N~~RR~~~q~l~v~pPfv~~Y~i~~Wa~~~~ 76 (93)
T 3cx5_H 43 AVFNSFRRFKSQFLYVLIPAGIYWYWWKNGNEYN 76 (93)
T ss_dssp TSSSCSHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHhcceEEechHhHHHHHHHHHHHHH
Confidence 6777778888888899999999999999887654
No 10
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=7.11 E-value=3.2e+02 Score=18.35 Aligned_cols=14 Identities=21% Similarity=0.247 Sum_probs=10.2
Q ss_pred cHHHHHHHHHhcCC
Q 013859 161 PLERLKLEYMVRGE 174 (435)
Q Consensus 161 Pld~iK~r~Q~~~~ 174 (435)
-+..||+|+|.-+.
T Consensus 10 rlaaiktrlqalgg 23 (73)
T 2a3d_A 10 RLAAIKTRLQALGG 23 (73)
T ss_dssp HHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHhcC
Confidence 45678999998543
Done!